Citrus Sinensis ID: 001969

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------99
MKTPANTAGAASNSGEGGGGEKKTINTELWHACAGPLVNLPAAGTHVVYFPQGHSEQVAASMKKDIDGQIPNYPNLPSKLLCILLNVTLHADTETDEVYAQMTLQPVPSYDREALLRSDLALKSNKPQTEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDFSMQPPAQELMARDLHDNIWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVLFIRDEKQQLLLGIRRANRQPANLSSSVLSSDSMHIGILAAAAHAAANNSPFTVFYNPRASPSEFVVPLAKYYKAVHSNQISLGMRFRMMFETEESGTRRYMGTITGISDLDPVRWKNSQWRNLQVGWDESTAGEKRNRVSIWEIEPVTAPFFICPPPFFRSKHPRQADDDASDLDNVFKRTMPWIGDDFGVKDSQSLPGLSLVQWMNMQQNPSLANAMQSSYMHSLPGSILQNLNGGLSQMPQQNNLQYTGQSLPQQVPQIDQLAKLPSTVNPLGSNILPQQPLGDISQQSRQNMITQNLPSGPVQAQVLQPQNLVQTSNILQQQPSIQNPQLPANLPQNLQQQQQQQHIMGQNQQQNLMQTQLPDPINQNLQMSDKQIQLHLLQKLQQQRQSLLSQQSALQQPAQLIQLQDQQRQLLDASQSFSRSGTPTQMLEMHQVTPTSLPQSNIMSQQIANSGSLNNVQFSQPPQQPKLEQQQPGILPQMPGHMGLPASHIINPVSTAGNSALTGAAGVGQSVITDDNPSCSTSPSTNNCQRLIQPTINSRTHRSAGIGEEVAQSASALLNPSALETMPSNANLVKDLPHKSDVKPSVNISKTQNQGFFTPQTYLNGAATQTDYLDTSSSTTSVCLSQNDVHLQQNNSLSYNPQSTLRDASQDGEVPVDPRSNIPYGANIDGPLGSMNPDPLLTKGMMGLGKDFSNNISSGAMLANYENSKDAQQELSSSIVSQSFGVPDMAFNSIDSTINDSSFLNGGPWAPPPQFPQRMRTYTKV
ccccccccccccccccccccccccccHHHHHHcccccccccccccEEEEccccHHHHHHccccccccccccccccccccccEEEEEEEcccccccccccEEEEEEEccccccHHHcccccccccccccccEEEEEEccccccccccccccHHHHHHccccccccccccccEEEEEEcccccEEEEEEEccccccccccccccccccccccccccEEEEEEcccccEEEEEEEcccccccccccccccccccHHHHHHHHHHHHccccEEEEEccccccccEEEEHHHHHHHHHccccccccEEEEEEEcccccEEEEEEEEEEEccccccccccccccEEEEEccccccccccccccccEEEEcccccccccccccccccccccccccccccHHcccccccccccccccccccccccHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHcccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHHHHcccHHHHHHHHHccccHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccc
ccccccccccccccccccccccccHHHHHHHHHcccccEccccccEEEEcccccHHHHHHHccccHHccccccccccccEEEEEEEEEEEccccccEEEEEEEEccccccccccccccccccccccccccHEEEEEccccccccccccHHHHHHHHHcccccccccccHHHHHHHHHcccEEEEEEEEccccccEEEccccEEEEEccEEEcccEEEEEEcccccEEEEEEEcccccccccccEEccccHHHHHHHHHHHHHHccccEEEEEccccccccEEEEHHHHHHHHHcccEEEEEEEEEEEcccccccEEEcEEEEEccccccccccccccEEEEEEccccccccccccccccEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHcHHHHHHcccccccccccccccccccccccHccccccHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHcccHHHHHHccccccccccccccccccccccccccccccccccccccccHHHHHHHccccccccHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEccccccccccccccccccccccccccccccccccHcccccccccccccccHccccccccHHHHcccccccccccccccccccccccccHcccccccccccccccccccEEcccccccccccccccccccccccccccccccEEEcccccccEEEcccccccccccHHHHHccccccccccccccccccccccccccccHHHHHHHHHHHccccccccccccccccEccccccccccccccccccccEEEEccc
mktpantagaasnsgeggggekktiNTELWHacagplvnlpaagthvvyfpqghsEQVAASMKkdidgqipnypnlpsKLLCILLNVTLHADTETDEVYAQmtlqpvpsydreaLLRSDlalksnkpqteFFCKTltasdtsthggfsvprraaekifppldfsmqppaqELMARDLHDNIWTFrhiyrgqpkrhlltTGWSLFvsgkrlfagdsvLFIRDEKQQLLLGIRRanrqpanlsssvlssdsMHIGILAAAAHaaannspftvfynpraspsefvVPLAKYYKAVHSNQISLGMRFRMMFEteesgtrrymgtitgisdldpvrwknsqwrnlqvgwdestagekrnrvsiweiepvtapfficpppffrskhprqadddasdLDNVFKrtmpwigddfgvkdsqslpglsLVQWMNMQQNPSLANAMQSsymhslpgsilqnlngglsqmpqqnnlqytgqslpqqvpqidqlaklpstvnplgsnilpqqplgdisqQSRQNMitqnlpsgpvqaqvlqpqnlvqtsnilqqqpsiqnpqlpanlpqNLQQQQQQQHIMGQNQQQNLmqtqlpdpinqnlqmSDKQIQLHLLQKLQQQRQSLLSQQSALQQPAQLIQLQDQQRQLLDasqsfsrsgtptqmlemhqvtptslpqsnimsqqiansgslnnvqfsqppqqpkleqqqpgilpqmpghmglpashiinpvstagnsaltgaagvgqsvitddnpscstspstnncqrliqptinsrthrsagiGEEVAQSASAllnpsaletmpsnanlvkdlphksdvkpsvnisktqnqgfftpqtylngaatqtdyldtsssttsvclsqndvhlqqnnslsynpqstlrdasqdgevpvdprsnipyganidgplgsmnpdplltkgmmglgkdfsnnissgamlanyensKDAQQELSSSIvsqsfgvpdmafnsidstindssflnggpwapppqfpqrmrtytkv
mktpantagaasnsgegggGEKKTINTELWHACAGPLVNLPAAGTHVVYFPQGHSEQVAASMKKDIDGQIPNYPNLPSKLLCILLNVTLHADTETDEVYAQMTLQPVPSYDREALLRSDLALKSNKPQTEFFCKTltasdtsthggfsvPRRAAEKIFPPLDFSMQPPAQELMARDLHDNIWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVLFIRDEKQQLLLGIRRANRQPANLSSSVLSSDSMHIGILAAAAHAAANNSPFTVFYNPRASPSEFVVPLAKYYKAVHsnqislgmrFRMMFETEesgtrrymGTITgisdldpvrwkNSQWRnlqvgwdestagekrnRVSIWEIEPVTAPFFICPPPFFRSKHPRQADDDASDLDNVFKRTMPWIGDDFGVKDSQSLPGLSLVQWMNMQQNPSLANAMQSSYMHSLPGSILQNLNGGLSQMPQQNNLQYTGQSLPQQVPQIDQLAKLPSTVNPLGSNILPQQPLGDISQQSRQNMITQNLPSGPVQAQVLQPQNLVQTSNILQQQPSIQNPQLPANLPQNLQQQQQQQHIMGQNQQQNLMQTQLPDPINQNLQMSDKQIQLHLLQKLQQQRQSLLSQQSALQQPAQLIQLQDQQRQLLDASQSFSRSGTPTQMLEMHQVTPTSLPQSNIMSQQIANSGSLNNVQFSQPPQQPKLEQQQPGILPQMPGHMGLPASHIINPVSTAGNSALTGAAGVGQSVITDDNPSCSTSPSTNNCQRLIQPTINSRTHRSAGIGEEVAQSASALLNPSALETMPSNANLVKDLPHKSDVKPSVNISKTQNQGFFTPQTYLNGAATQTDYLDTSSSTTSVCLSQNDVHLQQNNSLSYNPQSTLRDASQDGEVPVDPRSNIPYGANIDGPLGSMNPDPLLTKGMMGLGKDFSNNISSGAMLANYENSKDAQQELSSSIVSQSFGVPDMAFNSIDSTINdssflnggpwapppqfpqrmrtytkv
MKTPantagaasnsgeggggekktINTELWHACAGPLVNLPAAGTHVVYFPQGHSEQVAASMKKDIDGQIPNYPNLPSKLLCILLNVTLHADTETDEVYAQMTLQPVPSYDREALLRSDLALKSNKPQTEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDFSMQPPAQELMARDLHDNIWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVLFIRDEKQQLLLGIRRANRQPANlsssvlssdsMHIGILaaaahaaaNNSPFTVFYNPRASPSEFVVPLAKYYKAVHSNQISLGMRFRMMFETEESGTRRYMGTITGISDLDPVRWKNSQWRNLQVGWDESTAGEKRNRVSIWEIEPVTAPFFICPPPFFRSKHPRQADDDASDLDNVFKRTMPWIGDDFGVKDSQSLPGLSLVQWMNMQQNPSLANAMQSSYMHSLPGSILQNLNGGLSQMPQQNNLQYTGQSLPQQVPQIDQLAKLPSTVNPLGSNILPQQPLGDISQQSRQNMITQNLPSGPVQAQVLQPQNLVQTSNILQQQPSIqnpqlpanlpqnlqqqqqqqhimgqnqqqnlmqtqlPDPINQNLQMSDkqiqlhllqklqqqrqsllsqqsalqqpaqliqlqdqqrqlldasqsFSRSGTPTQMLEMHQVTPTSLPQSNIMSQQIANSGSLNNVQFSqppqqpkleqqqpGILPQMPGHMGLPASHIINPVSTAGNSALTGAAGVGQSVItddnpscstspstnncQRLIQPTINSRTHRSAGIGEEVAQSASALLNPSALETMPSNANLVKDLPHKSDVKPSVNISKTQNQGFFTPQTYLNGAATQTDYLDtsssttsVCLSQNDVHLQQNNSLSYNPQSTLRDASQDGEVPVDPRSNIPYGANIDGPLGSMNPDPLLTKGMMGLGKDFSNNISSGAMLANYENSKDAQQELSSSIVSQSFGVPDMAFNSIDSTINDSSFLNGGPWAPPPQFPQRMRTYTKV
************************INTELWHACAGPLVNLPAAGTHVVYFPQGH**********DIDGQIPNYPNLPSKLLCILLNVTLHADTETDEVYAQMTLQPVPSYDREALLR***********TEFFCKTLTA*********************************LMARDLHDNIWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVLFIRDEKQQLLLGIRR*****************MHIGILAAAAHAAANNSPFTVFYNPRASPSEFVVPLAKYYKAVHSNQISLGMRFRMMFETEESGTRRYMGTITGISDLDPVRWKNSQWRNLQVGWDESTAGEKRNRVSIWEIEPVTAPFFICPPPFFR**************DNVFKRTMPWIGDDFGVKDSQSLPGLSLVQWM************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************FFTPQTYLNGAATQ**Y*********************************************************************************************************************************************************
*************************NTELWHACAGPLVNLPAAGTHVVYFPQGHSEQV*************NYPNLPSKLLCILLNVTLHADTETDEVYAQMTLQP************************FFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDFSMQPPAQELMARDLHDNIWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVLFIRDEKQQLLLGIRR**********************LAAAAHAAANNSPFTVFYNPRASPSEFVVPLAKYYKAVHSNQISLGMRFRMMFETEESGTRRYMGTITGISDLDPVRWKNSQWRNLQVGWDESTAGEKRNRVSIWEIEPVTA******************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************GAATQTDYLDTSSSTTSVCL*****************************VPVDPRSNIPYGANIDGPLGSMNPDPLLTKGMMGLGKDFSN**S**************************FGVPDMAFNSIDSTINDSSFLNGG*******FPQRMRTYT**
**********************KTINTELWHACAGPLVNLPAAGTHVVYFPQGHSEQVAASMKKDIDGQIPNYPNLPSKLLCILLNVTLHADTETDEVYAQMTLQPVPSYDREALLRSDLALKSNKPQTEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDFSMQPPAQELMARDLHDNIWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVLFIRDEKQQLLLGIRRANRQPANLSSSVLSSDSMHIGILAAAAHAAANNSPFTVFYNPRASPSEFVVPLAKYYKAVHSNQISLGMRFRMMFETEESGTRRYMGTITGISDLDPVRWKNSQWRNLQVGWDESTAGEKRNRVSIWEIEPVTAPFFICPPPFFRSKHPRQADDDASDLDNVFKRTMPWIGDDFGVKDSQSLPGLSLVQWMNMQQNPSLANAMQSSYMHSLPGSILQNLNGGLSQMPQQNNLQYTGQSLPQQVPQIDQLAKLPSTVNPLGSNILPQQPLGDISQQSRQNMITQNLPSGPVQAQVLQPQNLVQTSNILQQQPSIQNPQLPANLP*****************QQNLMQTQLPDPINQNLQMSDKQIQLHLLQKLQ**************QPAQLIQLQDQQRQLLDASQSFSRSGTPTQMLEMHQVTPTSLPQSNIMSQQIANSGSLNNVQFSQPPQQPKLEQQQPGILPQMPGHMGLPASHIINPVSTAGNSALTGAAGVGQSVITD***********NNCQRLIQPTINSRTHRSAGIGEEVAQSASALLNPSALETMPSNANLVKDLPHKSDVKPSVNISKTQNQGFFTPQTYLNGAATQTDY********SVCLSQNDVHLQQNNSLSYNPQ************PVDPRSNIPYGANIDGPLGSMNPDPLLTKGMMGLGKDFSNNISSGAMLANYEN**********SIVSQSFGVPDMAFNSIDSTINDSSFLNGGPWAPPPQFPQ********
*********************KKTINTELWHACAGPLVNLPAAGTHVVYFPQGHSEQVAASMKKDIDGQIPNYPNLPSKLLCILLNVTLHADTETDEVYAQMTLQPVPS****ALLRSDLALKSNKPQTEFFCKTLTASD****GGFSVPRRAAEKIFPPLDFSMQPPAQELMARDLHDNIWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVLFIRDEKQQLLLGIRRANRQPANLSSSVLSSDSMHIGILAAAAHAAANNSPFTVFYNPRASPSEFVVPLAKYYKAVHSNQISLGMRFRMMFETEESGTRRYMGTITGISDLDPVRWKNSQWRNLQVGWDESTAGEKRNRVSIWEIEPVTAPFFICPPPFFRSKHP**********************************GLSLVQWMNMQQNPSLANAMQSSYMHSLPGSILQNL******************************************************************************************************************************************************************************************************MLE******TS*****************************************************************************DDNPSCSTSP****CQRLI******************AQSASA*LNPSALETMPSNANLVKDLPHKSDVKPSVNISKTQNQGFFTPQTYLNGAATQTDYLDTSSSTTSVCLSQNDVHLQQNNSLSYNPQSTLRDASQDGEVPVDPRSNIPYGANIDGPLGSMNPDPLLTKGMMGLGKDFSNNISSGAMLANYENSKDAQQELSSSIVSQSFGVPDMAFNSIDSTINDSSFLNGGPWAPPPQFPQRMRTYTKV
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MKTPANTAGAASNSGEGGGGEKKTINTELWHACAGPLVNLPAAGTHVVYFPQGHSEQVAASMKKDIDGQIPNYPNLPSKLLCILLNVTLHADTETDEVYAQMTLQPVPSYDREALLRSDLALKSNKPQTEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDFSMQPPAQELMARDLHDNIWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVLFIRDEKQQLLLGIRRANRQPANLSSSVLSSDSMHIGILAAAAHAAANNSPFTVFYNPRASPSEFVVPLAKYYKAVHSNQISLGMRFRMMFETEESGTRRYMGTITGISDLDPVRWKNSQWRNLQVGWDESTAGEKRNRVSIWEIEPVTAPFFICPPPFFRSKHPRQADDDASDLDNVFKRTMPWIGDDFGVKDSQSLPGLSLVQWMNMQQNPSLANAMQSSYMHSLPGSILQNLNGGLSQMPQQNNLQYTGQSLPQQVPQIDQLAKLPSTVNPLGSNILPQQPLGDISQQSRQNMITQNLPSGPVQAQVLQPQNLVQTSNILQQQPSIQNPQLPANLPQNLQQQQQQQHIMGQNQQQNLMQTQLPDPINQNLQMSDKQIQLHLLQKLQQQRQSLLSQQSALQQPAQLIQLQDQQRQLLDASQSFSRSGTPTQMLEMHQVTPTSLPQSNIMSQQIANSGSLNNVQFSQPPQQPKLEQQQPGILPQMPGHMGLPASHIINPVSTAGNSALTGAAGVGQSVITDDNPSCSTSPSTNNCQRLIQPTINSRTHRSAGIGEEVAQSASALLNPSALETMPSNANLVKDLPHKSDVKPSVNISKTQNQGFFTPQTYLNGAATQTDYLDTSSSTTSVCLSQNDVHLQQNNSLSYNPQSTLRDASQDGEVPVDPRSNIPYGANIDGPLGSMNPDPLLTKGMMGLGKDFSNNISSGAMLANYENSKDAQQELSSSIVSQSFGVPDMAFNSIDSTINDSSFLNGGPWAPPPQFPQRMRTYTKV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query989 2.2.26 [Sep-21-2011]
Q6Z2W3 1142 Auxin response factor 5 O yes no 0.533 0.462 0.689 0.0
Q0D9R7 1161 Auxin response factor 19 yes no 0.531 0.453 0.718 0.0
Q6YZW0 1116 Auxin response factor 21 no no 0.496 0.439 0.687 0.0
Q8RYC81086 Auxin response factor 19 yes no 0.431 0.393 0.771 0.0
A3B9A01055 Auxin response factor 16 no no 0.435 0.408 0.744 0.0
A2YAA51055 Auxin response factor 16 N/A no 0.435 0.408 0.742 0.0
P93022 1164 Auxin response factor 7 O no no 0.483 0.410 0.672 0.0
Q6H6V4908 Auxin response factor 6 O no no 0.423 0.461 0.639 1e-154
A2X1A1908 Auxin response factor 6 O N/A no 0.423 0.461 0.639 1e-154
Q9ZTX8935 Auxin response factor 6 O no no 0.429 0.454 0.620 1e-153
>sp|Q6Z2W3|ARFE_ORYSJ Auxin response factor 5 OS=Oryza sativa subsp. japonica GN=ARF5 PE=2 SV=2 Back     alignment and function desciption
 Score =  734 bits (1896), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 378/548 (68%), Positives = 440/548 (80%), Gaps = 20/548 (3%)

Query: 20  GEKKT--INTELWHACAGPLVNLPAAGTHVVYFPQGHSEQVAASMKKDIDGQIPNYPNLP 77
           GE+K   IN+ELWHACAGPLV+LP  G+ VVYFPQGHSEQVAASM+KD+D  +P+YPNLP
Sbjct: 34  GERKAAAINSELWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMQKDVDAHVPSYPNLP 93

Query: 78  SKLLCILLNVTLHADTETDEVYAQMTLQPVPSYDREALLRSDLALKSNKPQTEFFCKTLT 137
           SKL+C+L  V LHAD +TDEVYAQMTLQPV +Y +EAL  S+LALK  +PQ EFFCKTLT
Sbjct: 94  SKLICLLHGVNLHADPDTDEVYAQMTLQPVNTYGKEALQISELALKQARPQMEFFCKTLT 153

Query: 138 ASDTSTHGGFSVPRRAAEKIFPPLDFSMQPPAQELMARDLHDNIWTFRHIYRGQPKRHLL 197
           ASDTSTHGGFSVPRRAAEKIFPPLDFSMQPPAQEL ARD+HDN+WTFRHIYRGQPKRHLL
Sbjct: 154 ASDTSTHGGFSVPRRAAEKIFPPLDFSMQPPAQELQARDIHDNVWTFRHIYRGQPKRHLL 213

Query: 198 TTGWSLFVSGKRLFAGDSVLFIRDEKQQLLLGIRRANRQPANLSSSVLSSDSMHIGILAA 257
           TTGWSLFVSGKRLFAGDSV+ +RDEK QLLLGIRRANRQP N+SSSVLSSDSMHIG+LAA
Sbjct: 214 TTGWSLFVSGKRLFAGDSVIVVRDEKHQLLLGIRRANRQPTNISSSVLSSDSMHIGVLAA 273

Query: 258 AAHAAANNSPFTVFYNPRASPSEFVVPLAKYYKAVHSNQISLGMRFRMMFETEESGTRRY 317
           AAHAAAN+SPFT+FYNPRASP+EFV+P AKY KA++SNQISLGMRFRMMFETEE GTRRY
Sbjct: 274 AAHAAANSSPFTIFYNPRASPTEFVIPFAKYQKALYSNQISLGMRFRMMFETEELGTRRY 333

Query: 318 MGTITGISDLDPVRWKNSQWRNLQVGWDESTAGEKRNRVSIWEIEPVTAPFFICPPPFFR 377
           MGTITGISDLDPVRWKNSQWRNLQVGWDES AGE+RNRVSIWEIEPV APFF+CP PFF 
Sbjct: 334 MGTITGISDLDPVRWKNSQWRNLQVGWDESAAGERRNRVSIWEIEPVAAPFFLCPQPFFG 393

Query: 378 SKHPRQADDDASDLDNVFKRTMPWIGDDFGVKDSQ----SLPGLSLVQWMNM--QQNPSL 431
            K PRQ DD+ S+++N+FKR MPW+G++  +KD+Q    + PGLSLVQWMNM  QQ+ SL
Sbjct: 394 VKRPRQLDDE-SEMENLFKRAMPWLGEEVCIKDTQNQNSTAPGLSLVQWMNMNRQQSSSL 452

Query: 432 AN-AMQSSYMHSLPGSILQNLNGGL--------SQMPQQNNLQYTGQSLPQQVPQIDQLA 482
           AN A QS Y+ +L    +QNL            + + QQN +Q+    LPQQ+  ++ L+
Sbjct: 453 ANTAAQSEYLQALGNPAMQNLAADELARQLYVQNNLLQQNCIQFNSPKLPQQMQTMNDLS 512

Query: 483 KLPSTVNPLGSNILPQQPLGDISQQSRQNMITQNLPSGPVQAQVLQPQNLVQTSNILQQQ 542
           K    +N LG+ I PQ    D     RQ    Q +P    Q+ ++Q Q +VQ + + QQ+
Sbjct: 513 KAAIPLNQLGAIINPQDQKQDAVNHQRQQNSIQVIPLSQAQSNLVQAQVIVQ-NQMQQQK 571

Query: 543 PS-IQNPQ 549
           PS  QNPQ
Sbjct: 572 PSPTQNPQ 579
Auxin response factors (ARFs) are transcriptional factors that binds specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Oryza sativa subsp. japonica (taxid: 39947)
>sp|Q0D9R7|ARFS_ORYSJ Auxin response factor 19 OS=Oryza sativa subsp. japonica GN=ARF19 PE=2 SV=2 Back     alignment and function description
>sp|Q6YZW0|ARFU_ORYSJ Auxin response factor 21 OS=Oryza sativa subsp. japonica GN=ARF21 PE=2 SV=2 Back     alignment and function description
>sp|Q8RYC8|ARFS_ARATH Auxin response factor 19 OS=Arabidopsis thaliana GN=ARF19 PE=1 SV=2 Back     alignment and function description
>sp|A3B9A0|ARFP_ORYSJ Auxin response factor 16 OS=Oryza sativa subsp. japonica GN=ARF16 PE=2 SV=1 Back     alignment and function description
>sp|A2YAA5|ARFP_ORYSI Auxin response factor 16 OS=Oryza sativa subsp. indica GN=ARF16 PE=2 SV=1 Back     alignment and function description
>sp|P93022|ARFG_ARATH Auxin response factor 7 OS=Arabidopsis thaliana GN=ARF7 PE=1 SV=2 Back     alignment and function description
>sp|Q6H6V4|ARFF_ORYSJ Auxin response factor 6 OS=Oryza sativa subsp. japonica GN=ARF6 PE=1 SV=1 Back     alignment and function description
>sp|A2X1A1|ARFF_ORYSI Auxin response factor 6 OS=Oryza sativa subsp. indica GN=ARF6 PE=2 SV=1 Back     alignment and function description
>sp|Q9ZTX8|ARFF_ARATH Auxin response factor 6 OS=Arabidopsis thaliana GN=ARF6 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query989
224118764 1113 predicted protein [Populus trichocarpa] 0.997 0.886 0.769 0.0
255557566 1109 Auxin response factor, putative [Ricinus 0.972 0.867 0.743 0.0
73697836 1099 auxin response factor 2 [Gossypium arbor 0.981 0.883 0.713 0.0
359484941 1117 PREDICTED: auxin response factor 5-like 0.979 0.867 0.764 0.0
449522288 1107 PREDICTED: uncharacterized LOC101205542 0.972 0.869 0.699 0.0
47496694 1107 auxin response factor 2 [Cucumis sativus 0.972 0.869 0.698 0.0
2977360171034 unnamed protein product [Vitis vinifera] 0.908 0.869 0.725 0.0
449470376 1107 PREDICTED: LOW QUALITY PROTEIN: uncharac 0.972 0.869 0.686 0.0
350536075 1112 auxin response factor 19 [Solanum lycope 0.991 0.882 0.693 0.0
147857971 1096 hypothetical protein VITISV_014723 [Viti 0.947 0.854 0.736 0.0
>gi|224118764|ref|XP_002331440.1| predicted protein [Populus trichocarpa] gi|222873654|gb|EEF10785.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score = 1373 bits (3553), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 776/1008 (76%), Positives = 849/1008 (84%), Gaps = 21/1008 (2%)

Query: 1    MKTPANTAGAASNSGEGGGGEKKTINTELWHACAGPLVNLPAAGTHVVYFPQGHSEQVAA 60
            MK+PAN A AA  +GEG   EKK+IN ELW ACAGPLVNLPAAGTHVVYFPQGHSEQVAA
Sbjct: 1    MKSPANGAAAAVTNGEGV--EKKSINPELWQACAGPLVNLPAAGTHVVYFPQGHSEQVAA 58

Query: 61   SMKKDIDGQIPNYPNLPSKLLCILLNVTLHADTETDEVYAQMTLQPVPSYDREALLRSDL 120
            S+KKD++ QIPNYPNLPSKLLC+L NVTLHAD ETDEVY QMTLQPV S+D++ALLRSDL
Sbjct: 59   SLKKDVNAQIPNYPNLPSKLLCLLHNVTLHADPETDEVYVQMTLQPVSSFDKDALLRSDL 118

Query: 121  ALKSNKPQTEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDFSMQPPAQELMARDLHDN 180
            ALKSNKPQTEFFCKTLTASDTSTHGGFSVPRRAAEK FPPLDFSMQPPAQEL+ARDLHDN
Sbjct: 119  ALKSNKPQTEFFCKTLTASDTSTHGGFSVPRRAAEKTFPPLDFSMQPPAQELVARDLHDN 178

Query: 181  IWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVLFIRDEKQQLLLGIRRANRQPANL 240
            +WTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVLF+RDEKQQLLLGIRRANRQP NL
Sbjct: 179  VWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVLFMRDEKQQLLLGIRRANRQPTNL 238

Query: 241  SSSVLSSDSMHIGILAAAAHAAANNSPFTVFYNPRASPSEFVVPLAKYYKAVHSNQISLG 300
            SSSVLSSDSMHIGILAAAAHAAANNSPFTV+YNPRASPSEFV+PLAKYYKAV+SNQISLG
Sbjct: 239  SSSVLSSDSMHIGILAAAAHAAANNSPFTVYYNPRASPSEFVIPLAKYYKAVYSNQISLG 298

Query: 301  MRFRMMFETEESGTRRYMGTITGISDLDPVRWKNSQWRNLQVGWDESTAGEKRNRVSIWE 360
            MRFRMMFETEESGTRR+MGTITGISDLD VRWKNSQWRNLQVGWDESTAGE+RNRVSIWE
Sbjct: 299  MRFRMMFETEESGTRRHMGTITGISDLDAVRWKNSQWRNLQVGWDESTAGERRNRVSIWE 358

Query: 361  IEPVTAPFFICPPPFFRSKHPRQ---ADDDASDLDNVFKRTMPWIGDDFGVKDSQSLPGL 417
            IEPVTAPFFICPPPFFRSKHPRQ    DDD++D D++FKRTMPW+GDD  +KD Q LPGL
Sbjct: 359  IEPVTAPFFICPPPFFRSKHPRQPGMPDDDSTDFDSLFKRTMPWLGDDIYMKDPQVLPGL 418

Query: 418  SLVQWMNMQQNPSLANAMQSSYMHSLPGSILQNLNGG-LS--------QMPQQNNLQYTG 468
            SL Q MNMQQNPSLAN+MQ +YM SL GS+LQNL GG LS        QMPQ NNLQ+  
Sbjct: 419  SLAQRMNMQQNPSLANSMQPNYMQSLSGSVLQNLPGGDLSRQLGLSSPQMPQPNNLQFNA 478

Query: 469  QSLPQQVPQIDQLAKLPSTVNPLGSNILPQQPLGDISQQSRQNMITQNLPSGPVQAQVLQ 528
            Q LPQQ  Q+DQL KL S +NPLGS I  QQ +GDI+QQSRQNM+ Q LPS  VQAQ+LQ
Sbjct: 479  QRLPQQAQQLDQLPKLQSLLNPLGSIIQSQQQMGDITQQSRQNMMAQTLPSSQVQAQLLQ 538

Query: 529  PQNLVQTSNILQQQPSIQNPQLPANLPQNLQ--QQQQQQHIMGQNQQQNLMQTQLPDPIN 586
            PQ L QT+NILQQQPSIQ+ QL  NLPQ L   QQ QQQHIMGQNQQQ+LMQ+QL D +N
Sbjct: 539  PQTLAQTNNILQQQPSIQSHQLLRNLPQTLHQQQQNQQQHIMGQNQQQSLMQSQLSDQVN 598

Query: 587  QNLQMSDKQIQLHLLQKLQQQRQSLLSQQSALQQPAQLIQLQDQQRQLLDASQSFSRSGT 646
            Q++QMSD QIQ  L+QKLQQQ+QS+ +QQSA+ Q  QL QLQD QRQLLDASQSFSRS T
Sbjct: 599  QHMQMSDNQIQSQLMQKLQQQQQSVSAQQSAMHQAGQLGQLQDSQRQLLDASQSFSRSMT 658

Query: 647  PTQMLEMHQVTPTSLPQSNIMSQQIANSGSLNNVQFSQPPQQPKLEQQQPGI--LPQMPG 704
            P+QMLE+ Q TPTSLPQ N + QQ+  + +  N +FS  PQQ K +QQ  GI  L +M G
Sbjct: 659  PSQMLEIPQTTPTSLPQPNTIPQQMTKNNNQTNTRFSHLPQQLKPQQQHSGIMLLSEMAG 718

Query: 705  HMGLPASHIINPVSTAGNSALTGAAGVGQSVITDDNPSCSTSPSTNNCQRLIQPTINSRT 764
            HMGLP S + N +STAG+S LT AAG GQS ITDD PSCSTSPSTNNC  ++QP IN   
Sbjct: 719  HMGLPPSSMANQLSTAGSSILTAAAGPGQSGITDDVPSCSTSPSTNNCPNIVQPMINGWA 778

Query: 765  HRSAGIGEEVAQSASALLNPSALETMPSNANLVKDLPHKSDVKPSVNISKTQNQGFFTPQ 824
            HRS  +GE++AQSA  L +PSALET+ SN NLVKDL  KS+VKPS+NISK QN G F+ Q
Sbjct: 779  HRSTAMGEDMAQSAVTLFSPSALETVSSNGNLVKDLLQKSEVKPSLNISKNQNPGLFSSQ 838

Query: 825  TYLNGAATQTDYLDTSSSTTSVCLSQNDVHLQQ-NNSLSYNPQST-LRDASQDGEVPVDP 882
            TYLNG A Q DYLDTSSSTTSVCLSQNDVHLQQ NNSLSYNPQS  LRDAS DGE+  DP
Sbjct: 839  TYLNGVAAQIDYLDTSSSTTSVCLSQNDVHLQQNNNSLSYNPQSVLLRDASHDGELQGDP 898

Query: 883  RSNIPYGANIDGPLGS-MNPDPLLTKGMMGLGKDFSNNISSGAMLANYENSKDAQQELSS 941
            R+NI YG NID  L   +N D LLTKGMMGLGKDFSNN SSG ML N ENSKD QQELSS
Sbjct: 899  RNNILYGTNIDSQLVMPINSDHLLTKGMMGLGKDFSNNFSSGGMLTNCENSKDPQQELSS 958

Query: 942  SIVSQSFGVPDMAFNSIDSTINDSSFLNGGPWAPPPQFPQRMRTYTKV 989
            +IVS+SFGVPDM FNSIDSTINDSS LN G WAPP Q  QRMRTYTKV
Sbjct: 959  AIVSKSFGVPDMPFNSIDSTINDSSLLNRGSWAPPQQQFQRMRTYTKV 1006

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255557566|ref|XP_002519813.1| Auxin response factor, putative [Ricinus communis] gi|223541052|gb|EEF42609.1| Auxin response factor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|73697836|gb|AAZ81522.1| auxin response factor 2 [Gossypium arboreum] Back     alignment and taxonomy information
>gi|359484941|ref|XP_002266603.2| PREDICTED: auxin response factor 5-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|449522288|ref|XP_004168159.1| PREDICTED: uncharacterized LOC101205542 [Cucumis sativus] Back     alignment and taxonomy information
>gi|47496694|dbj|BAD19062.1| auxin response factor 2 [Cucumis sativus] Back     alignment and taxonomy information
>gi|297736017|emb|CBI24055.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|449470376|ref|XP_004152893.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC101205542 [Cucumis sativus] Back     alignment and taxonomy information
>gi|350536075|ref|NP_001234740.1| auxin response factor 19 [Solanum lycopersicum] gi|298570957|gb|ADI87602.1| auxin response factor 19 [Solanum lycopersicum] gi|307091363|gb|ADN28050.1| auxin response factor 19 [Solanum lycopersicum] Back     alignment and taxonomy information
>gi|147857971|emb|CAN80371.1| hypothetical protein VITISV_014723 [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query989
TAIR|locus:2202205 1086 ARF19 "auxin response factor 1 0.509 0.464 0.650 9.5e-193
TAIR|locus:2204237935 ARF6 "auxin response factor 6" 0.512 0.542 0.530 4.4e-143
TAIR|locus:2035454902 MP "MONOPTEROS" [Arabidopsis t 0.511 0.560 0.524 3.6e-135
TAIR|locus:2152642811 ARF8 "auxin response factor 8" 0.500 0.610 0.530 3.4e-132
TAIR|locus:2174013859 ARF2 "auxin response factor 2" 0.356 0.410 0.523 1.2e-100
TAIR|locus:2025991665 ARF1 "auxin response factor 1" 0.354 0.527 0.497 3.5e-91
TAIR|locus:2175098788 ARF4 "auxin response factor 4" 0.389 0.488 0.474 6.4e-87
TAIR|locus:2138096638 ARF9 "auxin response factor 9" 0.411 0.637 0.430 1.8e-85
TAIR|locus:2039124622 ARF11 "auxin response factor 1 0.344 0.548 0.489 2.4e-85
TAIR|locus:2057609608 ETT "ETTIN" [Arabidopsis thali 0.327 0.532 0.5 3.6e-82
TAIR|locus:2202205 ARF19 "auxin response factor 19" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1720 (610.5 bits), Expect = 9.5e-193, Sum P(3) = 9.5e-193
 Identities = 340/523 (65%), Positives = 393/523 (75%)

Query:    25 INTELWHACAGPLVNLPAAGTHVVYFPQGHSEQVAASMKKDIDGQIPNYPNLPSKLLCIL 84
             IN++LWHACAGPLV+LP  G+ VVYFPQGHSEQVAASM+K  D  IPNYPNLPSKL+C+L
Sbjct:    20 INSQLWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMQKQTDF-IPNYPNLPSKLICLL 78

Query:    85 LNVTLHADTETDEVYAQMTLQPVPSYDREALLRSDLALKSNKPQTEFFCKTLTASDTSTH 144
              +VTLHADTETDEVYAQMTLQPV  YDREALL SD+ LK N+  TEFFCKTLTASDTSTH
Sbjct:    79 HSVTLHADTETDEVYAQMTLQPVNKYDREALLASDMGLKLNRQPTEFFCKTLTASDTSTH 138

Query:   145 GGFSVPRRAAEKIFPPLDFSMQPPAQELMARDLHDNIWTFRHIYRGQPKRHLLTTGWSLF 204
             GGFSVPRRAAEKIFPPLDFSMQPPAQE++A+DLHD  WTFRHIYRGQPKRHLLTTGWS+F
Sbjct:   139 GGFSVPRRAAEKIFPPLDFSMQPPAQEIVAKDLHDTTWTFRHIYRGQPKRHLLTTGWSVF 198

Query:   205 VSGKRLFAGDSVLFIRDEKQQLLLGIRRANRQPANXXXXXXXXXXMHIGILXXXXXXXXN 264
             VS KRLFAGDSVLF+RDEK QL+LGIRRANRQ             MHIGIL        N
Sbjct:   199 VSTKRLFAGDSVLFVRDEKSQLMLGIRRANRQTPTLSSSVISSDSMHIGILAAAAHANAN 258

Query:   265 NSPFTVFYNPRASPSEFVVPLAKYYKAVHSNQISLGMRFRMMFETEESGTRRYMGTITGI 324
             +SPFT+F+NPRASPSEFVVPLAKY KA+++ Q+SLGMRFRMMFETE+ G RRYMGT+TGI
Sbjct:   259 SSPFTIFFNPRASPSEFVVPLAKYNKALYA-QVSLGMRFRMMFETEDCGVRRYMGTVTGI 317

Query:   325 SDLDPVRWKNSQWRNLQVGWDESTAGEKRNRVSIWEIEPVTAPFFICPPPFFRSKHPRQA 384
             SDLDPVRWK SQWRNLQVGWDESTAG++ +RVSIWEIEPV  PF+ICPPPFFR K+PRQ 
Sbjct:   318 SDLDPVRWKGSQWRNLQVGWDESTAGDRPSRVSIWEIEPVITPFYICPPPFFRPKYPRQP 377

Query:   385 D--DDASDLDNVFKRTMPWIGDDFGVKDSQS--LPGLSLVQWMNMQQNPSLANAMQSSYM 440
                DD  D++N FKR MPW+G+DFG+KD+QS   PGLSLVQWM+MQQN    N +  S  
Sbjct:   378 GMPDDELDMENAFKRAMPWMGEDFGMKDAQSSMFPGLSLVQWMSMQQN----NPLSGSAT 433

Query:   441 HSLPGSILQ-NLNGGLSQMPQQNNLQYTGQSLPQQVPQIDQLAKLPSTVNPLGSNILPQQ 499
               LP ++   NL    +       L +   +L     Q ++    P+TVN + S  +  Q
Sbjct:   434 PQLPSALSSFNLPNNFASNDPSKLLNFQSPNLSSANSQFNK----PNTVNHI-SQQMQAQ 488

Query:   500 PLGDISQQSRQNMITQNLPSGPVQAQVLQPQNLVQTSNILQQQ 542
             P    SQQ +Q    Q+      Q Q+ Q Q L  +   +QQQ
Sbjct:   489 PAMVKSQQQQQQQQQQHQHQ---QQQLQQQQQLQMSQQQVQQQ 528
GO:0005634 "nucleus" evidence=ISM;IEA;IDA;TAS
GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA
GO:0009725 "response to hormone stimulus" evidence=IEA
GO:0009733 "response to auxin stimulus" evidence=RCA;IMP;NAS
GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS
GO:0048366 "leaf development" evidence=IGI
GO:0048527 "lateral root development" evidence=IGI;RCA
GO:0009723 "response to ethylene stimulus" evidence=IMP
GO:0003677 "DNA binding" evidence=IDA
GO:0010311 "lateral root formation" evidence=IGI
GO:0007155 "cell adhesion" evidence=RCA
GO:0009741 "response to brassinosteroid stimulus" evidence=RCA
GO:0010090 "trichome morphogenesis" evidence=RCA
GO:0010583 "response to cyclopentenone" evidence=RCA
GO:0045010 "actin nucleation" evidence=RCA
GO:0048765 "root hair cell differentiation" evidence=RCA
GO:0071555 "cell wall organization" evidence=RCA
GO:0043565 "sequence-specific DNA binding" evidence=IDA
GO:0046983 "protein dimerization activity" evidence=IDA
TAIR|locus:2204237 ARF6 "auxin response factor 6" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2035454 MP "MONOPTEROS" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2152642 ARF8 "auxin response factor 8" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2174013 ARF2 "auxin response factor 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2025991 ARF1 "auxin response factor 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2175098 ARF4 "auxin response factor 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2138096 ARF9 "auxin response factor 9" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2039124 ARF11 "auxin response factor 11" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2057609 ETT "ETTIN" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q8RYC8ARFS_ARATHNo assigned EC number0.77160.43170.3931yesno
Q0D9R7ARFS_ORYSJNo assigned EC number0.71840.53180.4530yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query989
pfam0650783 pfam06507, Auxin_resp, Auxin response factor 6e-46
pfam0236297 pfam02362, B3, B3 DNA binding domain 7e-27
smart0101996 smart01019, B3, B3 DNA binding domain 2e-25
cd1001798 cd10017, B3_DNA, Plant-specific B3-DNA binding dom 3e-19
pfam09770 804 pfam09770, PAT1, Topoisomerase II-associated prote 4e-09
pfam09606768 pfam09606, Med15, ARC105 or Med15 subunit of Media 3e-08
pfam09606 768 pfam09606, Med15, ARC105 or Med15 subunit of Media 5e-07
pfam09770 804 pfam09770, PAT1, Topoisomerase II-associated prote 9e-07
pfam09770 804 pfam09770, PAT1, Topoisomerase II-associated prote 1e-05
cd10015109 cd10015, BfiI_C_EcoRII_N_B3, DNA binding domains o 1e-05
pfam13779820 pfam13779, DUF4175, Domain of unknown function (DU 2e-05
pfam09606768 pfam09606, Med15, ARC105 or Med15 subunit of Media 3e-05
pfam09770804 pfam09770, PAT1, Topoisomerase II-associated prote 1e-04
pfam03153332 pfam03153, TFIIA, Transcription factor IIA, alpha/ 2e-04
cd10016142 cd10016, EcoRII_N, N-terminal domain of type IIE r 7e-04
pfam13779820 pfam13779, DUF4175, Domain of unknown function (DU 8e-04
pfam03153332 pfam03153, TFIIA, Transcription factor IIA, alpha/ 0.001
pfam11498476 pfam11498, Activator_LAG-3, Transcriptional activa 0.001
PRK14948620 PRK14948, PRK14948, DNA polymerase III subunits ga 0.004
>gnl|CDD|191545 pfam06507, Auxin_resp, Auxin response factor Back     alignment and domain information 
 Score =  158 bits (403), Expect = 6e-46
 Identities = 58/84 (69%), Positives = 70/84 (83%), Gaps = 1/84 (1%)

Query: 258 AAHAAANNSPFTVFYNPRASPSEFVVPLAKYYKAVHSNQISLGMRFRMMFETEESGTRRY 317
           AAHAA+  SPF VFYNPRAS SEFVVP AKY KA+ +N  S+GMRF+M FETE+S  RR+
Sbjct: 1   AAHAASTGSPFHVFYNPRASTSEFVVPYAKYLKAM-NNPFSVGMRFKMRFETEDSSERRF 59

Query: 318 MGTITGISDLDPVRWKNSQWRNLQ 341
            GTI+G+SDLDP+RW NS+WR+LQ
Sbjct: 60  SGTISGVSDLDPIRWPNSKWRSLQ 83

A conserved region of auxin-responsive transcription factors. Length = 83
>gnl|CDD|216995 pfam02362, B3, B3 DNA binding domain Back     alignment and domain information
>gnl|CDD|214977 smart01019, B3, B3 DNA binding domain Back     alignment and domain information
>gnl|CDD|197383 cd10017, B3_DNA, Plant-specific B3-DNA binding domain Back     alignment and domain information
>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1 Back     alignment and domain information
>gnl|CDD|220309 pfam09606, Med15, ARC105 or Med15 subunit of Mediator complex non-fungal Back     alignment and domain information
>gnl|CDD|220309 pfam09606, Med15, ARC105 or Med15 subunit of Mediator complex non-fungal Back     alignment and domain information
>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1 Back     alignment and domain information
>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1 Back     alignment and domain information
>gnl|CDD|197381 cd10015, BfiI_C_EcoRII_N_B3, DNA binding domains of BfiI, EcoRII and plant B3 proteins Back     alignment and domain information
>gnl|CDD|222374 pfam13779, DUF4175, Domain of unknown function (DUF4175) Back     alignment and domain information
>gnl|CDD|220309 pfam09606, Med15, ARC105 or Med15 subunit of Mediator complex non-fungal Back     alignment and domain information
>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1 Back     alignment and domain information
>gnl|CDD|217392 pfam03153, TFIIA, Transcription factor IIA, alpha/beta subunit Back     alignment and domain information
>gnl|CDD|197382 cd10016, EcoRII_N, N-terminal domain of type IIE restriction endonuclease EcoRII and similar proteins Back     alignment and domain information
>gnl|CDD|222374 pfam13779, DUF4175, Domain of unknown function (DUF4175) Back     alignment and domain information
>gnl|CDD|217392 pfam03153, TFIIA, Transcription factor IIA, alpha/beta subunit Back     alignment and domain information
>gnl|CDD|151935 pfam11498, Activator_LAG-3, Transcriptional activator LAG-3 Back     alignment and domain information
>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 989
PF0650783 Auxin_resp: Auxin response factor; InterPro: IPR01 100.0
PF02362100 B3: B3 DNA binding domain; InterPro: IPR003340 Two 99.75
KOG06441113 consensus Uncharacterized conserved protein, conta 99.48
PF09217156 EcoRII-N: Restriction endonuclease EcoRII, N-termi 98.13
PF03754114 DUF313: Domain of unknown function (DUF313) ; Inte 97.84
KOG35982220 consensus Thyroid hormone receptor-associated prot 95.28
>PF06507 Auxin_resp: Auxin response factor; InterPro: IPR010525 This pattern represents a conserved region of auxin-responsive transcription factors Back     alignment and domain information 
Probab=100.00  E-value=2.3e-35  Score=265.85  Aligned_cols=83  Identities=67%  Similarity=1.128  Sum_probs=81.6

Q ss_pred             HHHHHhcCCcEEEEEcCCCCCCcceeehHHHHHHHhhCCCccCCeeeeeeeccCCCcceeeEEEEEeecCCCCCCCCCCc
Q 001969          258 AAHAAANNSPFTVFYNPRASPSEFVVPLAKYYKAVHSNQISLGMRFRMMFETEESGTRRYMGTITGISDLDPVRWKNSQW  337 (989)
Q Consensus       258 Aa~aaatgs~FtV~Y~PRas~sEFVVp~~kY~kA~~~~~ws~GMRFRM~FEtEDss~rry~GTItgi~d~DP~rWpnS~W  337 (989)
                      |+|||++|++|+|+||||++++|||||++||++|++ ++|++||||||.||+||+++++|+|||+||+|+||+|||+|+|
T Consensus         1 A~~aa~~~~~F~V~Y~PRa~~sEFVV~~~k~~~al~-~~~~~GmRfkM~fE~eds~~~~~~GtI~~v~~~dp~~w~~S~W   79 (83)
T PF06507_consen    1 AAHAAATGSPFEVFYYPRASPSEFVVPASKYDKALN-HPWSVGMRFKMRFETEDSSERRWQGTIVGVSDLDPIRWPGSKW   79 (83)
T ss_pred             ChhHhhcCCeEEEEECCCCCCcceEEEHHHHHHHhc-CCCCCCcEEEEEeccCCCccceeeeEEeEeeccCCCCCCCCCc
Confidence            689999999999999999999999999999999998 9999999999999999999999999999999999999999999


Q ss_pred             ceee
Q 001969          338 RNLQ  341 (989)
Q Consensus       338 R~Lq  341 (989)
                      ||||
T Consensus        80 R~Lq   83 (83)
T PF06507_consen   80 RMLQ   83 (83)
T ss_pred             ccCc
Confidence            9996

The plant hormone auxin (indole-3-acetic acid) can regulate the gene expression of several families, including Aux/IAA, GH3 and SAUR families. Two related families of proteins, Aux/IAA proteins (IPR003311 from INTERPRO) and the auxin response factors (ARF), are key regulators of auxin-modulated gene expression []. There are multiple ARF proteins, some of which activate, while others repress transcription. ARF proteins bind to auxin-responsive cis-acting promoter elements (AuxREs) using an N-terminal DNA-binding domain. It is thought that Aux/IAA proteins activate transcription by modifying ARF activity through the C-terminal protein-protein interaction domains (IPR011525 from INTERPRO) found in both Aux/IAA and ARF proteins. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0009725 response to hormone stimulus, 0005634 nucleus
>PF02362 B3: B3 DNA binding domain; InterPro: IPR003340 Two DNA binding proteins, RAV1 and RAV2 from Arabidopsis thaliana contain two distinct amino acid sequence domains found only in higher plant species Back     alignment and domain information
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] Back     alignment and domain information
>PF09217 EcoRII-N: Restriction endonuclease EcoRII, N-terminal; InterPro: IPR023372 There are four classes of restriction endonucleases: types I, II,III and IV Back     alignment and domain information
>PF03754 DUF313: Domain of unknown function (DUF313) ; InterPro: IPR005508 This is a family of proteins from Arabidopsis thaliana (Mouse-ear cress) with uncharacterised function Back     alignment and domain information
>KOG3598 consensus Thyroid hormone receptor-associated protein complex, subunit TRAP230 [Transcription] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query989
1wid_A130 Solution Structure Of The B3 Dna-Binding Domain Of 1e-08
>pdb|1WID|A Chain A, Solution Structure Of The B3 Dna-Binding Domain Of Rav1 Length = 130 Back     alignment and structure 
Iteration: 1

 Score = 58.9 bits (141), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 36/101 (35%), Positives = 50/101 (49%), Gaps = 2/101 (1%)
Query: 131 FFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDFSMQPPAQELMARDLHDNIWTFRHIYRG 190
            F K +T SD        +P+  AEK FP    ++      L   D++  +W FR+ Y  
Sbjct: 13  LFEKAVTPSDVGKLNRLVIPKHHAEKHFPLPSSNVSVKGVLLNFEDVNGKVWRFRYSYWN 72
Query: 191 QPKRHLLTTGWSLFVSGKRLFAGDSVLFIRD--EKQQLLLG 229
             + ++LT GWS FV  K L AGD V F R   + QQL +G
Sbjct: 73  SSQSYVLTKGWSRFVKEKNLRAGDVVSFSRSNGQDQQLYIG 113
  Database: pdbaa

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query989
1wid_A130 DNA-binding protein RAV1; DNA-binding domain, stru 6e-44
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-11
1vt4_I1221 APAF-1 related killer DARK; drosophila apoptosome, 9e-08
1vt4_I1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-04
1m2v_B 926 SEC24, protein transport protein SEC24, SEC24P, SE 3e-05
1m2v_B 926 SEC24, protein transport protein SEC24, SEC24P, SE 5e-04
3lj5_A725 Portal protein, protein GP1; DNA ejection, molecul 1e-04
3lj5_A725 Portal protein, protein GP1; DNA ejection, molecul 4e-04
1uur_A473 Stata protein, STAT protein; transcription activat 5e-04
1bf5_A 575 Signal transducer and activator of transcription 1 7e-04
>1wid_A DNA-binding protein RAV1; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.142.1.2 Length = 130 Back     alignment and structure
 Score =  154 bits (390), Expect = 6e-44
 Identities = 41/125 (32%), Positives = 58/125 (46%)

Query: 123 KSNKPQTEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDFSMQPPAQELMARDLHDNIW 182
            S +     F K +T SD        +P+  AEK FP    ++      L   D++  +W
Sbjct: 5   SSGRSAEALFEKAVTPSDVGKLNRLVIPKHHAEKHFPLPSSNVSVKGVLLNFEDVNGKVW 64

Query: 183 TFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVLFIRDEKQQLLLGIRRANRQPANLSS 242
            FR+ Y    + ++LT GWS FV  K L AGD V F R   Q   L I   +R  ++L +
Sbjct: 65  RFRYSYWNSSQSYVLTKGWSRFVKEKNLRAGDVVSFSRSNGQDQQLYIGWKSRSGSDLDA 124

Query: 243 SVLSS 247
           S  SS
Sbjct: 125 SGPSS 129
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 Back     alignment and structure
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 Back     alignment and structure
>3lj5_A Portal protein, protein GP1; DNA ejection, molecular motor, DNA packaging podoviridae, virus assembly, tail tube, trunk domain; 7.50A {Enterobacteria phage P22} Length = 725 Back     alignment and structure
>3lj5_A Portal protein, protein GP1; DNA ejection, molecular motor, DNA packaging podoviridae, virus assembly, tail tube, trunk domain; 7.50A {Enterobacteria phage P22} Length = 725 Back     alignment and structure
>1uur_A Stata protein, STAT protein; transcription activator, SH2, signal transduction, transducer, transcription factor; HET: PTR; 2.7A {Dictyostelium discoideum} SCOP: a.47.1.1 b.2.5.5 d.93.1.1 PDB: 1uus_A* Length = 473 Back     alignment and structure
>1bf5_A Signal transducer and activator of transcription 1-alpha/beta; complex (SH2 domain/DNA), SH2 domain, transcription factor; HET: DNA PTR; 2.90A {Homo sapiens} SCOP: a.47.1.1 b.2.5.5 d.93.1.1 Length = 575 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query989
1wid_A130 DNA-binding protein RAV1; DNA-binding domain, stru 99.96
4i1k_A146 B3 domain-containing transcription factor VRN1; B3 99.78
1yel_A104 AT1G16640; CESG, protein structure initiative, str 99.62
1na6_A404 Ecorii, restriction endonuclease ecorii; site-spec 94.64
3iot_A449 Maltose-binding protein, huntingtin fusion protei; 83.72
>1wid_A DNA-binding protein RAV1; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.142.1.2 Back     alignment and structure
Probab=99.96  E-value=8.4e-29  Score=236.48  Aligned_cols=112  Identities=32%  Similarity=0.520  Sum_probs=103.9

Q ss_pred             CCcceEEEEEeccccCCCCCceeeecchhhhcCCCCCCCCCCCceEEEEEecCCCeEEEEEEEeCCCCceeecccchhhh
Q 001969          126 KPQTEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDFSMQPPAQELMARDLHDNIWTFRHIYRGQPKRHLLTTGWSLFV  205 (989)
Q Consensus       126 ~~~~~~F~KtLT~SDVs~~GrfsVPkr~AE~~FPpLd~s~~~psq~Lvv~Dl~Gk~W~FR~iyrg~prRhlLTTGWs~FV  205 (989)
                      ++..++|+|+||+|||+++++|+||+++|++|||.++.+...++++|.++|.+|++|+|||+||+++++|+|++||+.||
T Consensus         8 ~~~~~~F~K~Lt~SDv~~~~rL~iPk~~a~~~lP~~~~~~~~~~~~l~l~D~~Gk~W~fr~~~~~~~~~~~Lt~GW~~FV   87 (130)
T 1wid_A            8 RSAEALFEKAVTPSDVGKLNRLVIPKHHAEKHFPLPSSNVSVKGVLLNFEDVNGKVWRFRYSYWNSSQSYVLTKGWSRFV   87 (130)
T ss_dssp             CCCEEEEEEECCTTTTSSSCCEEECHHHHTTTSCCCSSCCSSCCEEEEEEETTTEEEEEEEEEETTTTEEEEESSHHHHH
T ss_pred             CCCcceEEEEEehHHcCCCCEEEeCHHHHHhhCCccccccCCCcEEEEEEeCCCCEEEEEEEEECCCCceEEcCChHHHH
Confidence            46778999999999999999999999999999999987666778999999999999999999999899999999999999


Q ss_pred             ccCCCCCCCeEEEEEcc--CccEEEEEEecCCCC
Q 001969          206 SGKRLFAGDSVLFIRDE--KQQLLLGIRRANRQP  237 (989)
Q Consensus       206 r~KkL~aGDsVVF~R~e--~GeL~VGIRRA~r~~  237 (989)
                      ++|+|++||+|+|+|.+  ++.|+|++||+.+..
T Consensus        88 ~~~~L~~GD~~~F~~~~~~~~~l~I~~rr~~~~~  121 (130)
T 1wid_A           88 KEKNLRAGDVVSFSRSNGQDQQLYIGWKSRSGSD  121 (130)
T ss_dssp             HHTTCCTTCEEEEEECCSSSCCEEEEEECCCSCS
T ss_pred             HHcCCCCCCEEEEEEecCCCcEEEEEEEECCCCC
Confidence            99999999999999986  467999999998754
>4i1k_A B3 domain-containing transcription factor VRN1; B3 domain beta-barrel, DNA binding protein; 1.60A {Arabidopsis thaliana} Back     alignment and structure
>1yel_A AT1G16640; CESG, protein structure initiative, structural genomics, center for eukaryotic structural genomics, unknown function; NMR {Arabidopsis thaliana} SCOP: b.142.1.2 Back     alignment and structure
>1na6_A Ecorii, restriction endonuclease ecorii; site-specific restriction, mutation, replication, hydrolase; 2.10A {Escherichia coli} SCOP: b.142.1.1 c.52.1.22 PDB: 3hqg_A 3hqf_A Back     alignment and structure
>3iot_A Maltose-binding protein, huntingtin fusion protei; HTT-EX1, HD, sugar transport, transport, apoptos disease mutation, nucleus; 3.50A {Escherichia coli k-12} PDB: 3io6_A 3io4_A 3ior_A 3iou_A 3iov_A 3iow_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 989
d1wida_117 b.142.1.2 (A:) DNA-binding protein RAV1 {Thale cre 8e-37
d1na6a1175 b.142.1.1 (A:4-178) Restriction endonuclease EcoRI 1e-24
d1yela1102 b.142.1.2 (A:1-102) At1g16640 {Thale cress (Arabid 6e-13
>d1wida_ b.142.1.2 (A:) DNA-binding protein RAV1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 117 Back     information, alignment and structure

class: All beta proteins
fold: DNA-binding pseudobarrel domain
superfamily: DNA-binding pseudobarrel domain
family: B3 DNA binding domain
domain: DNA-binding protein RAV1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  132 bits (333), Expect = 8e-37
 Identities = 36/113 (31%), Positives = 52/113 (46%), Gaps = 2/113 (1%)

Query: 126 KPQTEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDFSMQPPAQELMARDLHDNIWTFR 185
           +     F K +T SD        +P+  AEK FP    ++      L   D++  +W FR
Sbjct: 1   RSAEALFEKAVTPSDVGKLNRLVIPKHHAEKHFPLPSSNVSVKGVLLNFEDVNGKVWRFR 60

Query: 186 HIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVLFIRDEKQ--QLLLGIRRANRQ 236
           + Y    + ++LT GWS FV  K L AGD V F R   Q  QL +G +  +  
Sbjct: 61  YSYWNSSQSYVLTKGWSRFVKEKNLRAGDVVSFSRSNGQDQQLYIGWKSRSGS 113
>d1na6a1 b.142.1.1 (A:4-178) Restriction endonuclease EcoRII, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 175 Back     information, alignment and structure
>d1yela1 b.142.1.2 (A:1-102) At1g16640 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 102 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query989
d1wida_117 DNA-binding protein RAV1 {Thale cress (Arabidopsis 99.94
d1na6a1175 Restriction endonuclease EcoRII, N-terminal domain 99.78
d1yela1102 At1g16640 {Thale cress (Arabidopsis thaliana) [Tax 99.53
>d1wida_ b.142.1.2 (A:) DNA-binding protein RAV1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
class: All beta proteins
fold: DNA-binding pseudobarrel domain
superfamily: DNA-binding pseudobarrel domain
family: B3 DNA binding domain
domain: DNA-binding protein RAV1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.94  E-value=2.2e-27  Score=218.88  Aligned_cols=109  Identities=33%  Similarity=0.529  Sum_probs=102.5

Q ss_pred             cceEEEEEeccccCCCCCceeeecchhhhcCCCCCCCCCCCceEEEEEecCCCeEEEEEEEeCCCCceeecccchhhhcc
Q 001969          128 QTEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDFSMQPPAQELMARDLHDNIWTFRHIYRGQPKRHLLTTGWSLFVSG  207 (989)
Q Consensus       128 ~~~~F~KtLT~SDVs~~GrfsVPkr~AE~~FPpLd~s~~~psq~Lvv~Dl~Gk~W~FR~iyrg~prRhlLTTGWs~FVr~  207 (989)
                      ..++|+|+||+|||+++|||+||+++|++|||+++...+.++++|.++|.+|++|+|+|+||+..++|+|++||..||++
T Consensus         3 ~~~iF~K~Lt~sDv~~~~rL~iP~~~~~~~lp~~~~~~~~~~~~~~~~d~~g~~W~~~~~~~~~~~~~~l~~GW~~Fv~~   82 (117)
T d1wida_           3 AEALFEKAVTPSDVGKLNRLVIPKHHAEKHFPLPSSNVSVKGVLLNFEDVNGKVWRFRYSYWNSSQSYVLTKGWSRFVKE   82 (117)
T ss_dssp             CEEEEEEECCTTTTSSSCCEEECHHHHTTTSCCCSSCCSSCCEEEEEEETTTEEEEEEEEEETTTTEEEEESSHHHHHHH
T ss_pred             CceEEEEEecchhcCCCCEEEECHHHHHHhCCccccccCCCcEEEEEEeCCCCEEEEEEEEECCCCceEEecCHHHHHHH
Confidence            45799999999999999999999999999999999988889999999999999999999999888889999999999999


Q ss_pred             CCCCCCCeEEEEEc--cCccEEEEEEecCCC
Q 001969          208 KRLFAGDSVLFIRD--EKQQLLLGIRRANRQ  236 (989)
Q Consensus       208 KkL~aGDsVVF~R~--e~GeL~VGIRRA~r~  236 (989)
                      |+|++||+|+|+|+  ++++|+|++||+...
T Consensus        83 ~~Lk~GD~~~F~~~~~~~~~~~i~~r~~~~~  113 (117)
T d1wida_          83 KNLRAGDVVSFSRSNGQDQQLYIGWKSRSGS  113 (117)
T ss_dssp             TTCCTTCEEEEEECCSSSCCEEEEEECCCSC
T ss_pred             cCCCCCCEEEEEEEeCCCCEEEEEEEECCCC
Confidence            99999999999997  577899999998763
>d1na6a1 b.142.1.1 (A:4-178) Restriction endonuclease EcoRII, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1yela1 b.142.1.2 (A:1-102) At1g16640 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure