Citrus Sinensis ID: 001982
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 986 | 2.2.26 [Sep-21-2011] | |||||||
| O24600 | 993 | DNA-directed RNA polymera | yes | no | 0.901 | 0.895 | 0.716 | 0.0 | |
| P69242 | 977 | DNA-directed RNA polymera | N/A | no | 0.896 | 0.904 | 0.688 | 0.0 | |
| P69243 | 977 | DNA-directed RNA polymera | N/A | no | 0.896 | 0.904 | 0.688 | 0.0 | |
| Q8L6J1 | 977 | DNA-directed RNA polymera | N/A | no | 0.862 | 0.870 | 0.714 | 0.0 | |
| Q8L6J3 | 1021 | DNA-directed RNA polymera | N/A | no | 0.826 | 0.798 | 0.651 | 0.0 | |
| Q8VWF8 | 1020 | DNA-directed RNA polymera | N/A | no | 0.826 | 0.799 | 0.648 | 0.0 | |
| Q8L6J5 | 1002 | DNA-directed RNA polymera | N/A | no | 0.823 | 0.810 | 0.646 | 0.0 | |
| Q93Y94 | 1002 | DNA-directed RNA polymera | N/A | no | 0.823 | 0.810 | 0.645 | 0.0 | |
| Q9LFV6 | 1011 | DNA-directed RNA polymera | no | no | 0.835 | 0.815 | 0.625 | 0.0 | |
| P92969 | 976 | DNA-directed RNA polymera | no | no | 0.827 | 0.836 | 0.608 | 0.0 |
| >sp|O24600|RPOT3_ARATH DNA-directed RNA polymerase 3, chloroplastic OS=Arabidopsis thaliana GN=RPOT3 PE=2 SV=1 | Back alignment and function desciption |
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Score = 1380 bits (3571), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 665/928 (71%), Positives = 770/928 (82%), Gaps = 39/928 (4%)
Query: 90 IENSVDFHIPTCEQEQNFHQRVENTETCADLVIPRSENSTNHQLMCLEPRRRIFVQDPPW 149
I NSV FH E +N T A L I EN L RRR+F+QDPPW
Sbjct: 74 ISNSVHFHGNLIESFENQDSSYAGTIKGASL-IEELENPVERN--GLSGRRRLFMQDPPW 130
Query: 150 FSSIFLKGLYKRIKLQ---EYREMKKRKFNLLRRRQVKQETEAWERMVDEYKELEAKMIE 206
S++FLKGL K + E +++ KRKF+ LRRRQVK+ETEAWERMVDEY++LE +M E
Sbjct: 131 ISALFLKGLSKMVDQTLKIERKDIDKRKFDSLRRRQVKEETEAWERMVDEYRDLEKEMCE 190
Query: 207 KRLAPNLPHIKGLFLGWFGPLSEAIEREQKMQR--TKKQKAAYAPHIELLPADKVAVIVM 264
K LAPNLP++K +FLGWF PL + IEREQK+Q+ +KK +AAYAPHIELLPADK+AVIVM
Sbjct: 191 KNLAPNLPYVKHMFLGWFQPLKDVIEREQKLQKNKSKKVRAAYAPHIELLPADKMAVIVM 250
Query: 265 HKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSK 324
HKMMGLVM+GHED C+QVVQAAV IG+AIEQE+RIH+FL++T RK D++E L K
Sbjct: 251 HKMMGLVMSGHEDGCIQVVQAAVSIGIAIEQEVRIHNFLKRT----RKNNAGDSQEEL-K 305
Query: 325 EKELLRKRVNSLIKSKRVMEAQKLLKNEETKPWGRDTQAKLGSRLVELLIETAYVQHPVN 384
EK+LLRKRVNSLI+ KR+++A K++K+E TKPWGR TQAKLGSRL+ELLIE AYVQ P+
Sbjct: 306 EKQLLRKRVNSLIRRKRIIDALKVVKSEGTKPWGRATQAKLGSRLLELLIEAAYVQPPLT 365
Query: 385 PADYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHMLIPYVPML 444
+ S P+ RPAFRHRFKT+ K+PG K +RYGV+ECD L+L GLD+SAKHMLIPYVPML
Sbjct: 366 QSGDSIPEFRPAFRHRFKTVTKYPGSKLVRRYGVIECDSLLLAGLDKSAKHMLIPYVPML 425
Query: 445 VPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVN 504
VPPK+WKGY+KGGYLFLPSY+MRTHGS+KQQ+ALK ++ +VFEALDTLG+TKWRVN
Sbjct: 426 VPPKRWKGYDKGGYLFLPSYIMRTHGSKKQQDALKDISHKTAHRVFEALDTLGNTKWRVN 485
Query: 505 KQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQ 564
+ +L V+E +W GGNIAGLV+R DV IPEKP SED E+Q WKWS RKA KIN+ERHS
Sbjct: 486 RNILDVVERLWADGGNIAGLVNREDVPIPEKPSSEDPEELQSWKWSARKANKINRERHSL 545
Query: 565 RCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLG 624
RCD ELKLSVAR+MKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSD+CRG LEFAEGRPLG
Sbjct: 546 RCDVELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGTLEFAEGRPLG 605
Query: 625 KSGLRWLKIHLANLFS--------------------------ENPINGSRWWLTAEDPFQ 658
KSGL WLKIHLANL++ ENPI+G RWWL AEDPFQ
Sbjct: 606 KSGLHWLKIHLANLYAGGVEKLSHDARLAFVENHLDDIMDSAENPIHGKRWWLKAEDPFQ 665
Query: 659 CLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPA 718
CLAAC+ L++ALKS SP+SVISHLPIHQDGSCNGLQHYAALGR++ EAAAVNLVAGEKPA
Sbjct: 666 CLAACVILTQALKSPSPYSVISHLPIHQDGSCNGLQHYAALGRDSFEAAAVNLVAGEKPA 725
Query: 719 DVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAR 778
DVYSEI+ RVHEIMK+DS+KDP +P A LAKILI QVDRKLVKQTVMTSVYGVT+VGAR
Sbjct: 726 DVYSEISRRVHEIMKKDSSKDPESNPTAALAKILITQVDRKLVKQTVMTSVYGVTYVGAR 785
Query: 779 EQIKRRLEEKGHITDDRQLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQ 838
EQIKRRLEEKG ITD+R LFAAACY+AKVTL ALGEIFEAAR+IM WLGDCAK+IAS+N
Sbjct: 786 EQIKRRLEEKGVITDERMLFAAACYSAKVTLAALGEIFEAARAIMSWLGDCAKIIASDNH 845
Query: 839 PVRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQREGNLVEIRKQRTAFPPNFVHSLDGS 898
PVRW TPLGLPVVQPYC++ERHLIRTSLQVLALQREGN V++RKQRTAFPPNFVHSLDG+
Sbjct: 846 PVRWITPLGLPVVQPYCRSERHLIRTSLQVLALQREGNTVDVRKQRTAFPPNFVHSLDGT 905
Query: 899 HMMMTAVACRDAGLHFAGVHDSFWTHACDVDEMNQILRKKFVELYNMPMLENLLESFQTS 958
HMMMTAVACR+AGL+FAGVHDS+WTHACDVD MN+ILR+KFVELYN P+LE+LL+SFQ S
Sbjct: 906 HMMMTAVACREAGLNFAGVHDSYWTHACDVDTMNRILREKFVELYNTPILEDLLQSFQES 965
Query: 959 YPTLSFPPLPERGNFDLEEVLESPYFFN 986
YP L FPP+P+RG+FDL+EVL+S YFFN
Sbjct: 966 YPNLVFPPVPKRGDFDLKEVLKSQYFFN 993
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DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Arabidopsis thaliana (taxid: 3702) EC: 2EC: .EC: 7EC: .EC: 7EC: .EC: 6 |
| >sp|P69242|RPOT3_NICSY DNA-directed RNA polymerase 3, chloroplastic OS=Nicotiana sylvestris GN=RPOT3 PE=2 SV=1 | Back alignment and function description |
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| >sp|P69243|RPO3A_TOBAC DNA-directed RNA polymerase 3A, chloroplastic OS=Nicotiana tabacum GN=RPOT3-SYL PE=3 SV=1 | Back alignment and function description |
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| >sp|Q8L6J1|RPO3B_TOBAC DNA-directed RNA polymerase 3B, chloroplastic OS=Nicotiana tabacum GN=RPOT3-TOM PE=2 SV=2 | Back alignment and function description |
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| >sp|Q8L6J3|RPO2B_TOBAC DNA-directed RNA polymerase 2B, chloroplastic/mitochondrial OS=Nicotiana tabacum GN=RPOT2-TOM PE=2 SV=2 | Back alignment and function description |
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| >sp|Q8VWF8|RPOT2_NICSY DNA-directed RNA polymerase 2, chloroplastic/mitochondrial OS=Nicotiana sylvestris GN=RPOT2 PE=2 SV=2 | Back alignment and function description |
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| >sp|Q8L6J5|RPO1B_TOBAC DNA-directed RNA polymerase 1B, mitochondrial OS=Nicotiana tabacum GN=RPOT1-TOM PE=2 SV=2 | Back alignment and function description |
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| >sp|Q93Y94|RPOT1_NICSY DNA-directed RNA polymerase 1, mitochondrial OS=Nicotiana sylvestris GN=RPOT1 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q9LFV6|RPOT2_ARATH DNA-directed RNA polymerase 2, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=RPOT2 PE=1 SV=1 | Back alignment and function description |
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| >sp|P92969|RPOT1_ARATH DNA-directed RNA polymerase 1, mitochondrial OS=Arabidopsis thaliana GN=RPOT1 PE=2 SV=1 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 986 | ||||||
| 224143911 | 882 | predicted protein [Populus trichocarpa] | 0.861 | 0.962 | 0.768 | 0.0 | |
| 225445794 | 979 | PREDICTED: DNA-directed RNA polymerase 3 | 0.869 | 0.875 | 0.766 | 0.0 | |
| 224088334 | 982 | predicted protein [Populus trichocarpa] | 0.961 | 0.965 | 0.697 | 0.0 | |
| 449506262 | 975 | PREDICTED: DNA-directed RNA polymerase 3 | 0.935 | 0.945 | 0.704 | 0.0 | |
| 449454095 | 975 | PREDICTED: DNA-directed RNA polymerase 3 | 0.935 | 0.945 | 0.703 | 0.0 | |
| 297825331 | 990 | PDE319/SCA3 [Arabidopsis lyrata subsp. l | 0.901 | 0.897 | 0.715 | 0.0 | |
| 15224093 | 993 | DNA-directed RNA polymerase 3 [Arabidops | 0.901 | 0.895 | 0.716 | 0.0 | |
| 297743676 | 808 | unnamed protein product [Vitis vinifera] | 0.793 | 0.967 | 0.793 | 0.0 | |
| 62750825 | 989 | DNA-dependent RNA polymerase [Spinacia o | 0.854 | 0.852 | 0.716 | 0.0 | |
| 59800202 | 977 | RecName: Full=DNA-directed RNA polymeras | 0.896 | 0.904 | 0.688 | 0.0 |
| >gi|224143911|ref|XP_002325119.1| predicted protein [Populus trichocarpa] gi|222866553|gb|EEF03684.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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Score = 1448 bits (3749), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 676/880 (76%), Positives = 779/880 (88%), Gaps = 31/880 (3%)
Query: 137 EPRRRIFVQDPPWFSSIFLKGLYK----RIKLQEYREMKKRKFNLLRRRQVKQETEAWER 192
E +++F+QDPPW S+ F KG+YK ++K+ E+++++KRK+NLLRRRQ+++ETEAWER
Sbjct: 4 ESSKKVFIQDPPWISAHFWKGMYKLANKKVKV-EFKDIEKRKYNLLRRRQIREETEAWER 62
Query: 193 MVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSEAIEREQKMQRTKKQKAAYAPHIE 252
M DEY+ L +M E++LAPNLP++KGL LGWF PL EAIE+EQKM+++KKQK+A++P+IE
Sbjct: 63 MADEYRGLVREMCERKLAPNLPYVKGLLLGWFEPLKEAIEKEQKMEKSKKQKSAFSPNIE 122
Query: 253 LLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRK 312
LLPADK+AVIVMHKMMGL+M GHED CV+VVQAAV IGMAIEQE+RIH+FLEKTKNY+RK
Sbjct: 123 LLPADKMAVIVMHKMMGLLMVGHEDGCVRVVQAAVQIGMAIEQEVRIHNFLEKTKNYQRK 182
Query: 313 KIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNEETKPWGRDTQAKLGSRLVEL 372
K + + +E + KEKE+LRKRVNSLI+ KR+ME Q L+K +ETKPW R TQAKLGSRL+EL
Sbjct: 183 KTMHEVQETMDKEKEVLRKRVNSLIRRKRLMEVQNLVKQDETKPWSRGTQAKLGSRLIEL 242
Query: 373 LIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRS 432
L ETAYVQ PVN ++ PPDVRPAFRH FKT+ K+PGQK K+YGV+ECDPL+L GLD +
Sbjct: 243 LTETAYVQPPVNQSEDIPPDVRPAFRHIFKTLTKNPGQKIVKKYGVIECDPLILTGLDGT 302
Query: 433 AKHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNCMKKVFEA 492
AKHMLIPY PMLVPPKKWKGY+KGG+LFLPSYVMRTHGSR+QQ A++SV G M+KVFEA
Sbjct: 303 AKHMLIPYFPMLVPPKKWKGYDKGGHLFLPSYVMRTHGSRQQQVAVRSVPGKQMQKVFEA 362
Query: 493 LDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSEDMTEVQKWKWSVR 552
LDTLG+TKWRVN+++L V+E IW SGGNIAGLVDR D+ IPEKP S+D+TE+QKWKWSVR
Sbjct: 363 LDTLGNTKWRVNRRLLDVVERIWTSGGNIAGLVDREDIPIPEKPSSDDLTEIQKWKWSVR 422
Query: 553 KAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCR 612
KAKKINQERHSQRCDTELKLSVAR++KDEEGFYYPHNLDFRGRAYPMHPHL HLSSD+CR
Sbjct: 423 KAKKINQERHSQRCDTELKLSVARKLKDEEGFYYPHNLDFRGRAYPMHPHLTHLSSDLCR 482
Query: 613 GVLEFAEGRPLGKSGLRWLKIHLANLFS--------------------------ENPING 646
GVLEF EGRPLGKSGLRWLKIHLANL+S +NP+NG
Sbjct: 483 GVLEFEEGRPLGKSGLRWLKIHLANLYSGGVEKLSHDGRLAFVENHLSEIFDSAKNPVNG 542
Query: 647 SRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEA 706
RWWL AEDPFQCLAACINLSEAL S+SPH+VISHLPIHQDGSCNGLQHYAALGR+TLEA
Sbjct: 543 KRWWLKAEDPFQCLAACINLSEALNSASPHTVISHLPIHQDGSCNGLQHYAALGRDTLEA 602
Query: 707 AAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVM 766
AAVNLVA EKP+DVYSEIAVRVHEI++RDSNKDP+ +P ALLAKIL+DQVDRKLVKQTVM
Sbjct: 603 AAVNLVAAEKPSDVYSEIAVRVHEIIRRDSNKDPATNPHALLAKILVDQVDRKLVKQTVM 662
Query: 767 TSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKVTLTALGEIFEAARSIMGWL 826
TSVYGVT+VGAREQIKRRLEEKGHITDDR LF+AACY AKVTLTALGE+F+AAR IM WL
Sbjct: 663 TSVYGVTYVGAREQIKRRLEEKGHITDDRLLFSAACYTAKVTLTALGELFQAARDIMSWL 722
Query: 827 GDCAKVIASENQPVRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQREGNLVEIRKQRTA 886
GDCAK+IASE+QPV+WTTPLGLPVVQPY K ERHLI+TSLQ+LALQREG+ V++RKQRTA
Sbjct: 723 GDCAKIIASEDQPVQWTTPLGLPVVQPYYKTERHLIKTSLQILALQREGSSVQVRKQRTA 782
Query: 887 FPPNFVHSLDGSHMMMTAVACRDAGLHFAGVHDSFWTHACDVDEMNQILRKKFVELYNMP 946
FPPNFVHSLDGSHMMMTAVACRDAGL FAGVHDSFWTHA DVD MN+ILR+KFVELYNMP
Sbjct: 783 FPPNFVHSLDGSHMMMTAVACRDAGLCFAGVHDSFWTHATDVDLMNRILREKFVELYNMP 842
Query: 947 MLENLLESFQTSYPTLSFPPLPERGNFDLEEVLESPYFFN 986
+LENLLE FQTSYPTL FPPLPERGNFDL++VL SPYFFN
Sbjct: 843 ILENLLEDFQTSYPTLQFPPLPERGNFDLQKVLRSPYFFN 882
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Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225445794|ref|XP_002274521.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic [Vitis vinifera] | Back alignment and taxonomy information |
|---|
| >gi|224088334|ref|XP_002308414.1| predicted protein [Populus trichocarpa] gi|222854390|gb|EEE91937.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|449506262|ref|XP_004162698.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|449454095|ref|XP_004144791.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|297825331|ref|XP_002880548.1| PDE319/SCA3 [Arabidopsis lyrata subsp. lyrata] gi|297326387|gb|EFH56807.1| PDE319/SCA3 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
| >gi|15224093|ref|NP_179989.1| DNA-directed RNA polymerase 3 [Arabidopsis thaliana] gi|3914826|sp|O24600.1|RPOT3_ARATH RecName: Full=DNA-directed RNA polymerase 3, chloroplastic; Flags: Precursor gi|2330560|emb|CAA69972.1| chloroplast single-subunit DNA-dependent RNA polymerase [Arabidopsis thaliana] gi|2330564|emb|CAA69717.1| chloroplast single-subunit DNA-dependent RNA polymerase [Arabidopsis thaliana] gi|4115372|gb|AAD03373.1| chloroplast single subunit DNA-dependent RNA polymerase [Arabidopsis thaliana] gi|110739160|dbj|BAF01496.1| chloroplast single subunit DNA-dependent RNA polymerase [Arabidopsis thaliana] gi|330252437|gb|AEC07531.1| DNA-directed RNA polymerase 3 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
| >gi|297743676|emb|CBI36559.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|62750825|emb|CAC80139.1| DNA-dependent RNA polymerase [Spinacia oleracea] | Back alignment and taxonomy information |
|---|
| >gi|59800202|sp|P69242.1|RPOT3_NICSY RecName: Full=DNA-directed RNA polymerase 3, chloroplastic; AltName: Full=NsRpoT-C; AltName: Full=T7 bacteriophage-type single subunit RNA polymerase 3; Flags: Precursor gi|59800203|sp|P69243.1|RPO3A_TOBAC RecName: Full=DNA-directed RNA polymerase 3A, chloroplastic; AltName: Full=NictaRpoT3-syl; AltName: Full=T7 bacteriophage-type single subunit RNA polymerase 3A; Flags: Precursor gi|21425641|emb|CAC82576.3| phage-type RNA polymerase [Nicotiana sylvestris] gi|21425679|emb|CAC95027.2| plastid RNA polymerase [Nicotiana tabacum] gi|24475541|dbj|BAC22693.1| T7 bacteriophage-type single subunit RNA polymerase [Nicotiana sylvestris] gi|24475543|dbj|BAC22694.1| T7 bacteriophage-type single subunit RNA polymerase [Nicotiana sylvestris] | Back alignment and taxonomy information |
|---|
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 986 | ||||||
| TAIR|locus:2047515 | 993 | SCA3 "SCABRA 3" [Arabidopsis t | 0.550 | 0.546 | 0.681 | 0.0 | |
| UNIPROTKB|P69242 | 977 | RPOT3 "DNA-directed RNA polyme | 0.561 | 0.567 | 0.621 | 0.0 | |
| UNIPROTKB|Q8VWF8 | 1020 | RPOT2 "DNA-directed RNA polyme | 0.476 | 0.460 | 0.591 | 3.4e-312 | |
| UNIPROTKB|Q93Y94 | 1002 | RPOT1 "DNA-directed RNA polyme | 0.467 | 0.460 | 0.591 | 4.5e-306 | |
| DICTYBASE|DDB_G0267416 | 950 | rpmA "DNA-dependent RNA polyme | 0.363 | 0.376 | 0.482 | 2.7e-143 | |
| SGD|S000001858 | 1351 | RPO41 "Mitochondrial RNA polym | 0.332 | 0.242 | 0.432 | 1.9e-131 | |
| POMBASE|SPAC26H5.12 | 1154 | rpo41 "mitochondrial RNA polym | 0.315 | 0.269 | 0.439 | 6.4e-129 | |
| ASPGD|ASPL0000068622 | 1391 | AN7609 [Emericella nidulans (t | 0.457 | 0.324 | 0.307 | 2.4e-123 | |
| RGD|1304599 | 1205 | Polrmt "polymerase (RNA) mitoc | 0.342 | 0.280 | 0.431 | 8.1e-117 | |
| UNIPROTKB|F1PCF7 | 1221 | POLRMT "DNA-directed RNA polym | 0.344 | 0.278 | 0.419 | 4.6e-116 |
| TAIR|locus:2047515 SCA3 "SCABRA 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1973 (699.6 bits), Expect = 0., Sum P(2) = 0.
Identities = 379/556 (68%), Positives = 449/556 (80%)
Query: 90 IENSVDFHIPTCEQEQNFHQRVENTETCADLVIPRSENSTNHQLMCLEPRRRIFVQDPPW 149
I NSV FH E +N T A L I EN L RRR+F+QDPPW
Sbjct: 74 ISNSVHFHGNLIESFENQDSSYAGTIKGASL-IEELENPVERN--GLSGRRRLFMQDPPW 130
Query: 150 FSSIFLKGLYKRIK--LQ-EYREMKKRKFNLLRRRQVKQETEAWERMVDEYKELEAKMIE 206
S++FLKGL K + L+ E +++ KRKF+ LRRRQVK+ETEAWERMVDEY++LE +M E
Sbjct: 131 ISALFLKGLSKMVDQTLKIERKDIDKRKFDSLRRRQVKEETEAWERMVDEYRDLEKEMCE 190
Query: 207 KRLAPNLPHIKGLFLGWFGPLSEAIEREQKMQRTKKQK--AAYAPHIELLPADKVAVIVM 264
K LAPNLP++K +FLGWF PL + IEREQK+Q+ K +K AAYAPHIELLPADK+AVIVM
Sbjct: 191 KNLAPNLPYVKHMFLGWFQPLKDVIEREQKLQKNKSKKVRAAYAPHIELLPADKMAVIVM 250
Query: 265 HKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSK 324
HKMMGLVM+GHED C+QVVQAAV IG+AIEQE+RIH+FL++T RK D++E L K
Sbjct: 251 HKMMGLVMSGHEDGCIQVVQAAVSIGIAIEQEVRIHNFLKRT----RKNNAGDSQEEL-K 305
Query: 325 EKELLRKRVNSLIKSKRVMEAQKLLKNEETKPWGRDTQAKLGSRLVELLIETAYVQHPVN 384
EK+LLRKRVNSLI+ KR+++A K++K+E TKPWGR TQAKLGSRL+ELLIE AYVQ P+
Sbjct: 306 EKQLLRKRVNSLIRRKRIIDALKVVKSEGTKPWGRATQAKLGSRLLELLIEAAYVQPPLT 365
Query: 385 PADYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHMLIPYVPML 444
+ S P+ RPAFRHRFKT+ K+PG K +RYGV+ECD L+L GLD+SAKHMLIPYVPML
Sbjct: 366 QSGDSIPEFRPAFRHRFKTVTKYPGSKLVRRYGVIECDSLLLAGLDKSAKHMLIPYVPML 425
Query: 445 VPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVN 504
VPPK+WKGY+KGGYLFLPSY+MRTHGS+KQQ+ALK ++ +VFEALDTLG+TKWRVN
Sbjct: 426 VPPKRWKGYDKGGYLFLPSYIMRTHGSKKQQDALKDISHKTAHRVFEALDTLGNTKWRVN 485
Query: 505 KQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQ 564
+ +L V+E +W GGNIAGLV+R DV IPEKP SED E+Q WKWS RKA KIN+ERHS
Sbjct: 486 RNILDVVERLWADGGNIAGLVNREDVPIPEKPSSEDPEELQSWKWSARKANKINRERHSL 545
Query: 565 RCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLG 624
RCD ELKLSVAR+MKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSD+CRG LEFAEGRPLG
Sbjct: 546 RCDVELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGTLEFAEGRPLG 605
Query: 625 KSGLRWLKIHLANLFS 640
KSGL WLKIHLANL++
Sbjct: 606 KSGLHWLKIHLANLYA 621
|
|
| UNIPROTKB|P69242 RPOT3 "DNA-directed RNA polymerase 3, chloroplastic" [Nicotiana sylvestris (taxid:4096)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q8VWF8 RPOT2 "DNA-directed RNA polymerase 2, chloroplastic/mitochondrial" [Nicotiana sylvestris (taxid:4096)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q93Y94 RPOT1 "DNA-directed RNA polymerase 1, mitochondrial" [Nicotiana sylvestris (taxid:4096)] | Back alignment and assigned GO terms |
|---|
| DICTYBASE|DDB_G0267416 rpmA "DNA-dependent RNA polymerase" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
| SGD|S000001858 RPO41 "Mitochondrial RNA polymerase" [Saccharomyces cerevisiae (taxid:4932)] | Back alignment and assigned GO terms |
|---|
| POMBASE|SPAC26H5.12 rpo41 "mitochondrial RNA polymerase Rpo41" [Schizosaccharomyces pombe (taxid:4896)] | Back alignment and assigned GO terms |
|---|
| ASPGD|ASPL0000068622 AN7609 [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
| RGD|1304599 Polrmt "polymerase (RNA) mitochondrial (DNA directed)" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F1PCF7 POLRMT "DNA-directed RNA polymerase" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q93Y94 | RPOT1_NICSY | 2, ., 7, ., 7, ., 6 | 0.6458 | 0.8235 | 0.8103 | N/A | no |
| P69243 | RPO3A_TOBAC | 2, ., 7, ., 7, ., 6 | 0.6881 | 0.8965 | 0.9048 | N/A | no |
| P69242 | RPOT3_NICSY | 2, ., 7, ., 7, ., 6 | 0.6881 | 0.8965 | 0.9048 | N/A | no |
| O24600 | RPOT3_ARATH | 2, ., 7, ., 7, ., 6 | 0.7165 | 0.9016 | 0.8952 | yes | no |
| Q8L6J5 | RPO1B_TOBAC | 2, ., 7, ., 7, ., 6 | 0.6469 | 0.8235 | 0.8103 | N/A | no |
| Q8L6J1 | RPO3B_TOBAC | 2, ., 7, ., 7, ., 6 | 0.7146 | 0.8620 | 0.8700 | N/A | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 2.7.7 | 0.976 |
| 4th Layer | 2.7.7.6 | 0.991 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 986 | |||
| COG5108 | 1117 | COG5108, RPO41, Mitochondrial DNA-directed RNA pol | 0.0 | |
| pfam00940 | 394 | pfam00940, RNA_pol, DNA-dependent RNA polymerase | 0.0 | |
| PHA00452 | 807 | PHA00452, PHA00452, T3/T7-like RNA polymerase | 1e-167 |
| >gnl|CDD|227439 COG5108, RPO41, Mitochondrial DNA-directed RNA polymerase [Transcription] | Back alignment and domain information |
|---|
Score = 581 bits (1499), Expect = 0.0
Identities = 299/899 (33%), Positives = 433/899 (48%), Gaps = 127/899 (14%)
Query: 177 LLRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSEAIERE-- 234
L + + E W+ ++ +++ K EK + L W+ + + E
Sbjct: 255 WLEKSAIALAEEMWKAGIERFEKRGEKNREKNA-------EASNLSWYRMIIHLHKEEIA 307
Query: 235 --------QKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAA 286
+ ++ Y P+++L DKVA + + ++ LV DR +++ +
Sbjct: 308 GLLEALLAEASLGKAGKRLTYGPYLKLADLDKVAHLTIRELFDLVSMRRYDRGMRLTPLS 367
Query: 287 VHIGMAIEQEIRIHSFLEKTKN---YKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVM 343
+ +G +E E F K+ RKKI + +KR M
Sbjct: 368 IRLGAMVEDEFFSEQFKGHEKDAYEDARKKIPEQFHN---------------AVHNKRSM 412
Query: 344 EAQKLLKNEETKPWGRDTQAKLGSRLVELLIETAYVQ-HPVNPA-DYSPPDVRPAFRHRF 401
K E + W +D +AK+GS + LL+ A ++ ++ A + + AFRH +
Sbjct: 413 TRHAKHKGAEWQDWPQDIKAKVGSVALCLLLSVAKIEVKLIDIATEQTLKGEFEAFRHSY 472
Query: 402 KTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLFL 461
+ H G K D L+ E + + +PMLVPPK W + +GGY +
Sbjct: 473 QY---HNGTKIGVVATHETLDWLLTE--NSRLAPLSPQLLPMLVPPKPWTSWFRGGYWYG 527
Query: 462 PSYVMRTHGSRKQQEALKSVTGNC-MKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGN 520
++R + +Q L + N M KV+ +++ LG+T W +N +V V+ S+W +G
Sbjct: 528 RVRLLRLKKTGEQVRYLLMASENGDMDKVYHSINALGNTAWSINHRVFEVMASLWNNGET 587
Query: 521 IAGLVDRND--VLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRM 578
+ +D + P E +WK + + N S+RCD KL +AR
Sbjct: 588 FLCIPQADDMWLAPPMPREDMSPEEFSRWKSERKTIAEANARAVSKRCDFNYKLEIARAF 647
Query: 579 KDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANL 638
DE+ FY+PH LDFRGRAYP+ HLNH +D RG+L+FA G+PLG GL WLKIHLANL
Sbjct: 648 LDEK-FYFPHQLDFRGRAYPLSLHLNHQGNDASRGLLQFANGKPLGPEGLDWLKIHLANL 706
Query: 639 F------------------------SENPINGSRWWLTAEDPFQCLAACINLSEALKSSS 674
F +ENP++G+RWWLTA+ P+Q LA C E +
Sbjct: 707 FGVDKCSMNERVAFVMANQQEILDSAENPLDGNRWWLTADKPWQALAFCFEWQEYVAEGD 766
Query: 675 PHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKR 734
+ ISHLP+ QDG+CNGLQHYAALG + AA VNLV +KP DVY+ +A V ++
Sbjct: 767 HEAFISHLPVQQDGTCNGLQHYAALGGDEEGAAQVNLVPSDKPNDVYATVASVVIAKLRD 826
Query: 735 DSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDD 794
+ AK L D+ R +VK+TVMT+VYGVT+VGA QI +RL I
Sbjct: 827 IAEAGDE------TAKELKDKETRTVVKETVMTNVYGVTYVGATRQITKRLT---LIYGA 877
Query: 795 RQLFAA--ACYAAKVTLTALGEIFEAARSIMGWLGDCAKVI------------------A 834
+ Y K A +F AA I WL DC I A
Sbjct: 878 SKFDTVDPWKYLTKEVFPAERTLFAAAHFIQDWLWDCVGEIVVSAAGDMDWLQKKAGIKA 937
Query: 835 SENQPVRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQRE--GNLVEIRKQRTAFPPNFV 892
E+ PV WTTPLGLP+VQPY +E+ + T+LQ + +Q + V+ RKQ + PPNF+
Sbjct: 938 DESLPVIWTTPLGLPIVQPYRTSEQKQLETNLQTVFIQLDVASKKVDKRKQGSGIPPNFI 997
Query: 893 HSLDGSHMMMTAVACRDAGLHFAGVHDSFWTHACDVDEMNQILRKKFVELYNMPMLENLL 952
HSLD +HM +T C D G+ FA VHDS+WTHA D D MNQ LR++FV+L+ + L
Sbjct: 998 HSLDAAHMQLTVSRCHDQGIRFALVHDSYWTHAGDADAMNQFLREEFVKLHGDHDVLRLK 1057
Query: 953 ESF--------------------------QTSYPTLSFPPLPERGNFDLEEVLESPYFF 985
F + +Y L PPLPE+G+ DL +VLES YFF
Sbjct: 1058 AEFGRRYKGFLVSKKAIKANDEDLTAKLGEGTYIPLELPPLPEKGSLDLSQVLESAYFF 1116
|
Length = 1117 |
| >gnl|CDD|216207 pfam00940, RNA_pol, DNA-dependent RNA polymerase | Back alignment and domain information |
|---|
| >gnl|CDD|222797 PHA00452, PHA00452, T3/T7-like RNA polymerase | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 986 | |||
| KOG1038 | 1088 | consensus Mitochondrial/chloroplast DNA-directed R | 100.0 | |
| PHA00452 | 807 | T3/T7-like RNA polymerase | 100.0 | |
| COG5108 | 1117 | RPO41 Mitochondrial DNA-directed RNA polymerase [T | 100.0 | |
| PF00940 | 405 | RNA_pol: DNA-dependent RNA polymerase; InterPro: I | 100.0 | |
| PF14700 | 318 | RPOL_N: DNA-directed RNA polymerase N-terminal; PD | 100.0 | |
| smart00482 | 206 | POLAc DNA polymerase A domain. | 91.68 | |
| COG5108 | 1117 | RPO41 Mitochondrial DNA-directed RNA polymerase [T | 88.1 | |
| cd08637 | 377 | DNA_pol_A_pol_I_C Polymerase I functions primarily | 85.7 | |
| cd08638 | 373 | DNA_pol_A_theta DNA polymerase theta is a low-fide | 84.54 | |
| PRK14975 | 553 | bifunctional 3'-5' exonuclease/DNA polymerase; Pro | 84.1 |
| >KOG1038 consensus Mitochondrial/chloroplast DNA-directed RNA polymerase RPO41, provides primers for DNA replication-initiation [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-236 Score=2013.30 Aligned_cols=832 Identities=58% Similarity=0.973 Sum_probs=770.4
Q ss_pred cceeecCCCchhHHHhh-----hhhhhhh---HHHHhhhhHH-HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHccc
Q 001982 140 RRIFVQDPPWFSSIFLK-----GLYKRIK---LQEYREMKKR-KFNLLRRRQVKQETEAWERMVDEYK-ELEAKMIEKRL 209 (986)
Q Consensus 140 ~~~~~~~~~~~~~~~~~-----~~~~~~~---~~~~~~~~~~-~~~~l~~RQ~~lE~~~~~~a~~r~~-~~~~~~~~~g~ 209 (986)
..-......|.++.+.. .....++ +...++.+.. +|-.+.+||..+|.++|++|+++|+ +...+|++..+
T Consensus 202 ~~~~~~~~m~ke~~~~~~~~~~~~~~~~~~~lk~v~k~~~~~~d~~~l~~Rq~~~e~~~~e~a~e~~k~el~~~~c~~~l 281 (1088)
T KOG1038|consen 202 EINELVTKMEKEGNSLNQISSKFLEESRDLPLKAVRKGFGDFKDFFNLDRRQVKLETEAWERAAEEWKIELESDMCEGSL 281 (1088)
T ss_pred hHHHHHhHhhhhhhhhhHHHHHHHHHHhcccHHHHHHhccchHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhc
Confidence 44456677887777633 3333233 5666777766 8899999999999999999999999 77778999999
Q ss_pred CCCChh-HHHHHHHHHHHHHHHHHHHHHHHhhc--cCccchhhhhccCChhHHHHHHHHHHHHHHhcCCCCCcchHHHHH
Q 001982 210 APNLPH-IKGLFLGWFGPLSEAIEREQKMQRTK--KQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAA 286 (986)
Q Consensus 210 a~~~~~-~~~ll~~w~~~L~~~I~~e~~~~~~~--~~r~~y~p~L~~l~~e~lA~Iti~~~l~~~~~~~~~~~~~~~~~~ 286 (986)
++++|| +++++++||++|.++|++|++.++.. +.|..|+|||++||++++|+|||+++|+++++|++.+|+++++++
T Consensus 282 ~~~lp~~lk~lf~~W~~~l~~ai~ee~n~~r~~~~~~r~~Y~p~L~lL~a~k~aviti~el~~ll~tg~~~~~~~v~~aa 361 (1088)
T KOG1038|consen 282 APNLPYNLKSLFLGWFKPLRDAIKEEINLLRALVRKGRLNYAPFLKLLDADKMAVITIHELMGLLMTGGETGGVRVVQAA 361 (1088)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccchHHHhcChhhHHHHHHHHHHhhhccCCCccchhHHHHH
Confidence 999999 99999999999999999999998875 889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-CCCCCCCHHHHHHH
Q 001982 287 VHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKN-EETKPWGRDTQAKL 365 (986)
Q Consensus 287 ~~IG~aVe~E~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~W~~~~~~kv 365 (986)
.+||++||+|+|++.++++..+++.-. ..-.-++....++.++.++++.++.+.+..... +...+|+..++++|
T Consensus 362 ~~~G~aveqe~ri~~~lq~~~k~~~~~-----~~~~~ke~~~~~~~v~~l~~~~k~~~~~~~~~~~~~~~pWp~~v~~kv 436 (1088)
T KOG1038|consen 362 KSLGRAVEQEFRIEQFLQRKTKNKAGD-----SYCELKELGKSRKEVRQLVQNLKLSQRLSGPESHLSEKPWPSAVQAKV 436 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcccch-----HHHHHHHhhcccHHHHHHHHHHHHHHHhcccccccccCCccHHHHHHH
Confidence 999999999999999987654322111 111124455666777777777766655555554 56789999999999
Q ss_pred HHHHHHHHHHHccccCCCCCCCCCCCCccCceeEeeeeeecCCCCCcceeEEEEecCHHHHHHHHhhhhcccCCCCccee
Q 001982 366 GSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHMLIPYVPMLV 445 (986)
Q Consensus 366 G~~Li~~L~e~~~i~~~~~~~~~~~~~~~paF~h~~~~~~~~~g~~~~k~~gvi~~~~~~~~~l~~~~~~~~~~~lPMlv 445 (986)
|++|+++||++++|+++.+++.++.++..|||.|+|++. +|+..+++||+|+|||.+..+|++.+.++.++++||||
T Consensus 437 Gs~L~~lL~~~aki~~~~~~~~~~~~~~~paf~h~f~~~---n~~~~~~~~g~ie~~pll~r~leks~~~~~~~~vPMLv 513 (1088)
T KOG1038|consen 437 GSRLIELLMQVAKIQVPADQPDTKLPDERPAFVHTFQVT---NGQKGGRKYGVIECHPLLSRGLEKSALHFVPPLVPMLV 513 (1088)
T ss_pred HHHHHHHHHHHhcCCCcccCcCcCccccchhhhhheeee---cccccceeeeeeecCHHHHHHhhhhhcccccccccccc
Confidence 999999999999999999988778889999999999965 44434789999999999999999988888999999999
Q ss_pred CCCCCcCCCCcccccCCccceecCCcHHHHHHH-HhccccChHHHHHHHHhhcCcceEEcHHHHHHHHHHHHcCCCCCCC
Q 001982 446 PPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEAL-KSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGL 524 (986)
Q Consensus 446 pP~pW~~~~~GGYl~~~s~l~R~~~~~~q~~~l-~~~~~~~l~~v~~aLN~Lqst~wrIN~~VL~vi~~~w~~g~~i~~l 524 (986)
||+||++++.||||++++++||++++++|.+++ ++.+.++++.||+|||.||+||||||++||||+.++|++|+.+.++
T Consensus 514 pPkpWt~~~~Ggyl~~~s~lmRt~g~~~Q~~~llkas~~~~l~~v~daL~~LG~t~WrVN~rvldvV~riw~~Gg~~~~~ 593 (1088)
T KOG1038|consen 514 PPKPWTGYDSGGYLFLPSYLMRTHGAKEQVDYLLKASPPGQLDPVFDALDTLGNTKWRVNRRVLDVVIRIWQNGGCFLLI 593 (1088)
T ss_pred CCCCCCCCCCCceEecchhhhhcCCcHHHHHHHHhcCChhhhHHHHHHHHHhcCCCeeecchHHHHHHHHHhcCCCccCC
Confidence 999999999999999999999999999999865 5556889999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCC-CCCCHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHhhcCCCceeecccCCCCCcccCCCCCC
Q 001982 525 VDRNDVLIPEKP-LSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHL 603 (986)
Q Consensus 525 ~~~~~~p~P~~p-~~~d~~~~~~wk~~~~~~~~~~~~~~S~R~~~~~~L~iA~~f~~~~~fYfPhnlDFRGR~Yp~~~~L 603 (986)
+++.+.++|++| ..+|+++++.|+++.+++.+.++++||+|||++|+|+||++|+|+ .||||||||||||+||+||||
T Consensus 594 v~r~~~~lP~~P~~s~dp~~~~~wk~e~k~~~k~~~e~HS~RCD~~ykLsvAr~~~de-~Fy~PHNmDFRGRaYP~~PHl 672 (1088)
T KOG1038|consen 594 VPREDVPLPPKPTLSEDPAELKAWKWEVKKAQKVNRERHSLRCDAEYKLSVARKMKDE-EFYYPHNMDFRGRAYPLPPHL 672 (1088)
T ss_pred CCCCCCCCCCCCCCCcChHHHHHhHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhccC-eeecCcccCcCCccCCCCchh
Confidence 999999999999 678999999999999999999999999999999999999999998 699999999999999999999
Q ss_pred CCCCchhhhhhhhcccCccCCcchhhHHHHHHHhhcC-------------------------CCCCCCchhhhcCCChHH
Q 001982 604 NHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFS-------------------------ENPINGSRWWLTAEDPFQ 658 (986)
Q Consensus 604 n~qGsDl~RsLL~FaegkpLG~~Gl~WLKIhlANl~G-------------------------~dPl~~~~wW~~AD~PwQ 658 (986)
||.|||+|||||+||+|+|||.+||+|||||+||+|| ++||+|++||++||||||
T Consensus 673 NHLgsDlcRglLeF~~GkPLG~sGL~WLKIHlaNL~~g~~kl~~~~RlAF~E~hl~DI~DSAd~PLtG~rWW~~AedPfQ 752 (1088)
T KOG1038|consen 673 NHLGSDLCRGLLEFAEGKPLGPSGLRWLKIHLANLYAGVDKLSLRDRLAFTEEHLDDIFDSADRPLTGRRWWLKAEDPFQ 752 (1088)
T ss_pred cccchHHHHHHHHHhcCCcCCccchhHHHHHHHHHhcccccccHHHHHHHHHHHHHHHhhcccCCCcccchhhcCCChHH
Confidence 9999999999999999999999999999999999995 789999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCcceecccccccCCcchhHHHHHhcCChhhhhhcccCCCCCCcchhhHHHHHHHHHHHhhcCC
Q 001982 659 CLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNK 738 (986)
Q Consensus 659 fLA~C~El~~a~~s~~P~~y~S~lPV~qDGSCNGLQHyAAL~rD~~Ga~~VNLip~d~PqDvYs~Va~~V~~~i~~da~~ 738 (986)
|||+|||+++|++++||+.|+||+||||||||||||||||||||..||++|||+|+|+|||||++||..|.+.+++||++
T Consensus 753 ~LA~C~elaea~RspdPeayiSH~PIHQDGSCNGLQHYAALGrD~~GA~~VNLvpsdkPqDVYs~VA~~V~~~~k~DAe~ 832 (1088)
T KOG1038|consen 753 CLAACMELAEALRSPDPEAYISHIPIHQDGSCNGLQHYAALGRDSEGAAAVNLVPSDKPQDVYSAVAARVEKIMKQDAEK 832 (1088)
T ss_pred HHHHHHHHHHHHcCCCHHHHHhcCCcccCCCcchHHHHHHhcCccccchhccccCCCCchhHHHHHHHHHHHHHHHhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChhHHHHHHhhcccccccccccceeeecccchhhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHHHHHHHHHHHHH
Q 001982 739 DPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKVTLTALGEIFEA 818 (986)
Q Consensus 739 ~~~~~~~~~~ak~l~~~i~RKvVKqtVMT~vYGvT~~Gar~QI~~~L~~~~~~~d~~~~~~~a~Ylak~v~~ai~e~f~~ 818 (986)
|+ .+|++|.+.||||||||||||+|||||++|||+||.++|++++.++|+.++|.+|+|+++++|+||+|||.+
T Consensus 833 g~------e~Ak~L~~~V~RKvVKQTVMT~VYGVTyvGAR~QI~krL~e~~~f~d~~~v~~as~Yltk~tf~aLrEmF~~ 906 (1088)
T KOG1038|consen 833 GP------EVAKILKDQVTRKVVKQTVMTSVYGVTYVGARLQIKKRLKEIDDFPDEKEVFDASCYLTKKTFEALREMFTA 906 (1088)
T ss_pred Ch------HHHHHHHHHHhHHHhhhheeeeeeeeeEecHHHHHHHHhhhccCcchhHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 85 589999999999999999999999999999999999999999999999889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHcCCCcEEEEcCCCCeEEEeeccCCceeEEeeeEEEEEe-cC-CCcCchhhhhccCCCcchhhhh
Q 001982 819 ARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQ-RE-GNLVEIRKQRTAFPPNFVHSLD 896 (986)
Q Consensus 819 A~~im~WL~~~A~~i~~~~~pV~WtTPlGlpVvQ~Y~k~~~~~I~t~lq~~~l~-~~-~d~vd~rKQ~~Af~PNFIHSLD 896 (986)
|++||+||++||++|++++.+|+||||+||||||||++.++++|+|.+|++++. .+ +++||.|||++|||||||||||
T Consensus 907 araIq~WlgecAklIs~~~~~V~WtTPLGLPVVQPYr~~~~~qirt~lQt~~~~~~d~~~~vn~rkQktaFPPNFIHSLD 986 (1088)
T KOG1038|consen 907 ARAIQDWLGECAKLISSENSPVEWTTPLGLPVVQPYRQEKKKQIRTGLQTLFLSPRDLTNKVNARKQKTAFPPNFIHSLD 986 (1088)
T ss_pred HHHHHHHHHHHHHHHhcCCCceEEecCCCCcccchhhhhhhhcccccceEEeecchhhccccchhhhhccCCCchhhccc
Confidence 999999999999999999999999999999999999999999999999999998 34 7899999999999999999999
Q ss_pred hHHHHHHHHHHhhcCCcEEEeeccccCCCCChhHHHHHHHHHHHHhcCcchHHHHHHHHHHh------------CCCCCC
Q 001982 897 GSHMMMTAVACRDAGLHFAGVHDSFWTHACDVDEMNQILRKKFVELYNMPMLENLLESFQTS------------YPTLSF 964 (986)
Q Consensus 897 AsHmmlta~~~~~~Gi~FasVHDSFwThA~dvd~m~~ilRe~FV~Lys~~il~~l~e~f~~~------------~~~~~~ 964 (986)
||||||||++|.++||+||+|||||||||||||+||++|||+||+|||+|||++|+|+|++| |+.+.|
T Consensus 987 ~SHMmmTal~C~rqGl~FasVHDsyWTHAcDVd~MN~ilREqFV~Lhs~pIle~L~e~f~~ry~~~~~~~~~~s~l~l~f 1066 (1088)
T KOG1038|consen 987 GSHMMMTALACERQGLTFASVHDSYWTHACDVDVMNRILREQFVELHSQPILERLLESFEKRYKFKDSDFKNDSQLPLIF 1066 (1088)
T ss_pred chHHHHHHHHHHhcCCceeeeecchhccccchHHHHHHHHHHHHHHcccHHHHHHHHHHHHHhccccchhhhhccCCccC
Confidence 99999999999999999999999999999999999999999999999999999999999994 456789
Q ss_pred CCCCCCCCCChhhhccCCCCCC
Q 001982 965 PPLPERGNFDLEEVLESPYFFN 986 (986)
Q Consensus 965 p~~P~~G~LDL~~Vl~S~YFF~ 986 (986)
|++|++|+|||+.||+|+||||
T Consensus 1067 pplP~rGdfDLk~Vl~S~YFFs 1088 (1088)
T KOG1038|consen 1067 PPLPKRGDFDLKKVLDSTYFFS 1088 (1088)
T ss_pred CCCCCCCCccHHHHhccccccC
Confidence 9999999999999999999997
|
|
| >PHA00452 T3/T7-like RNA polymerase | Back alignment and domain information |
|---|
| >COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription] | Back alignment and domain information |
|---|
| >PF00940 RNA_pol: DNA-dependent RNA polymerase; InterPro: IPR002092 DNA-directed RNA polymerases 2 | Back alignment and domain information |
|---|
| >PF14700 RPOL_N: DNA-directed RNA polymerase N-terminal; PDB: 3SPA_A 1CEZ_A 1H38_B 1S77_D 1QLN_A 1S0V_D 3E2E_A 2PI4_A 3E3J_B 1S76_D | Back alignment and domain information |
|---|
| >smart00482 POLAc DNA polymerase A domain | Back alignment and domain information |
|---|
| >COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription] | Back alignment and domain information |
|---|
| >cd08637 DNA_pol_A_pol_I_C Polymerase I functions primarily to fill DNA gaps that arise during DNA repair, recombination and replication | Back alignment and domain information |
|---|
| >cd08638 DNA_pol_A_theta DNA polymerase theta is a low-fidelity family A enzyme implicated in translesion synthesis and in somatic hypermutation | Back alignment and domain information |
|---|
| >PRK14975 bifunctional 3'-5' exonuclease/DNA polymerase; Provisional | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 986 | ||||
| 3spa_A | 1134 | Crystal Structure Of Human Mitochondrial Rna Polyme | 1e-123 | ||
| 1aro_P | 883 | T7 Rna Polymerase Complexed With T7 Lysozyme Length | 8e-66 | ||
| 3e2e_A | 889 | Crystal Structure Of An Intermediate Complex Of T7 | 2e-65 | ||
| 2pi4_A | 878 | T7rnap Complexed With A Phi10 Protein And Initiatin | 2e-65 | ||
| 4rnp_A | 883 | Bacteriophage T7 Rna Polymerase, High Salt Crystal | 3e-65 |
| >pdb|3SPA|A Chain A, Crystal Structure Of Human Mitochondrial Rna Polymerase Length = 1134 | Back alignment and structure |
|
| >pdb|1ARO|P Chain P, T7 Rna Polymerase Complexed With T7 Lysozyme Length = 883 | Back alignment and structure |
| >pdb|3E2E|A Chain A, Crystal Structure Of An Intermediate Complex Of T7 Rnap And 7nt Of Rna Length = 889 | Back alignment and structure |
| >pdb|2PI4|A Chain A, T7rnap Complexed With A Phi10 Protein And Initiating Gtps. Length = 878 | Back alignment and structure |
| >pdb|4RNP|A Chain A, Bacteriophage T7 Rna Polymerase, High Salt Crystal Form, Low Temperature Data, Alpha-Carbons Only Length = 883 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 575 bits (1482), Expect = 0.0
Identities = 272/907 (29%), Positives = 435/907 (47%), Gaps = 80/907 (8%)
Query: 132 QLMCLEPRRRIFVQDPPWFSSIFLKGLYKRIKLQEYREMKKRKFNLLRRRQVKQETEAWE 191
+ + P S + K ++ + K + A
Sbjct: 256 HKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLPLKTLQCLFEKQLHMELASR 315
Query: 192 RMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSEAIEREQKMQR--TKKQKAAYAP 249
V ++ E + A +K L W L A+ + + + + P
Sbjct: 316 VCVVSVEKPTLPSKEVKHARK--TLKTLRDQWEKALCRALRETKNRLEREVYEGRFSLYP 373
Query: 250 HIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKNY 309
+ LL +V +++ + L G + +A + Q R+ ++ +N+
Sbjct: 374 FLCLLDEREVVRMLLQVLQALPAQGESFTTLARELSARTFSRHVVQRQRVSGQVQALQNH 433
Query: 310 KRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNEETKPWGRDTQAKLGSRL 369
RK + + E L R+ +L + +PW Q +LG L
Sbjct: 434 YRKYLCLLASDAEVPEPCLPRQYWEALGAPE----------ALREQPWPLPVQMELGKLL 483
Query: 370 VELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGL 429
E+L++ + ++ + P H + + ++ G+++ P ++ L
Sbjct: 484 AEMLVQATQMPCSLDKPH-RSSRLVPVLYHVYSF-------RNVQQIGILKPHPAYVQLL 535
Query: 430 DRSAKHMLI---PYVPMLVPPKKWKGYNKGGYLFLPSYVMRT-HGSRKQQEALKSVTGNC 485
+++A+ L VPML PP W + G +L P+ +MRT G+ + QE L++
Sbjct: 536 EKAAEPTLTFEAVDVPMLCPPLPWTSPHSGAFLLSPTKLMRTVEGATQHQELLETCPPTA 595
Query: 486 MKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIP-----EKPLSED 540
+ +AL LG+ WRVN +VL ++ ++ + G V P P S
Sbjct: 596 LHGALDALTQLGNCAWRVNGRVLDLVLQLFQAKGCPQLGVPAPPSEAPQPPEAHLPHSAA 655
Query: 541 MTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMH 600
+ + + +K+ +E HS R + +LS+A+ ++D F+ PHN+DFRGR YP
Sbjct: 656 PARKAELRRELAHCQKVAREMHSLRAEALYRLSLAQHLRDRV-FWLPHNMDFRGRTYPCP 714
Query: 601 PHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFS-------------------- 640
PH NHL SDV R +LEFA+GRPLG GL WLKIHL NL
Sbjct: 715 PHFNHLGSDVARALLEFAQGRPLGPHGLDWLKIHLVNLTGLKKREPLRKRLAFAEEVMDD 774
Query: 641 -----ENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQH 695
+ P+ G +WW+ AE+P+Q LA C+ ++ A+++S P + +SHLP+HQDGSCNGLQH
Sbjct: 775 ILDSADQPLTGRKWWMGAEEPWQTLACCMEVANAVRASDPAAYVSHLPVHQDGSCNGLQH 834
Query: 696 YAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQ 755
YAALGR+++ AA+VNL + P DVYS +A +V ++D+ + +A++L
Sbjct: 835 YAALGRDSVGAASVNLEPSDVPQDVYSGVAAQVEVFRRQDAQRGMR------VAQVLEGF 888
Query: 756 VDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKVTLTALGEI 815
+ RK+VKQTVMT VYGVT G R QI++RL E + ++ A+ Y + +L E+
Sbjct: 889 ITRKVVKQTVMTVVYGVTRYGGRLQIEKRLRELSDFPQE-FVWEASHYLVRQVFKSLQEM 947
Query: 816 FEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKNER-HLIRTSLQVLALQRE 874
F R+I WL + A++I+ V W TPLG+PV+QPY + + I +Q +
Sbjct: 948 FSGTRAIQHWLTESARLISHMGSVVEWVTPLGVPVIQPYRLDSKVKQIGGGIQSITYTHN 1007
Query: 875 GNL---VEIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGVHDSFWTHACDVDEM 931
G++ RKQ+ FPPNF+HSLD SHMM+TA+ C GL F VHD +WTHA DV M
Sbjct: 1008 GDISRKPNTRKQKNGFPPNFIHSLDSSHMMLTALHCYRKGLTFVSVHDCYWTHAADVSVM 1067
Query: 932 NQILRKKFVELYNMPMLENLLESFQTSYPT------------LSFPPLPERGNFDLEEVL 979
NQ+ R++FV L++ P+L++L + + + +P+ G FDLE+V
Sbjct: 1068 NQVCREQFVRLHSEPILQDLSRFLVKRFCSEPQKILEASQLKETLQAVPKPGAFDLEQVK 1127
Query: 980 ESPYFFN 986
S YFF+
Sbjct: 1128 RSTYFFS 1134
|
| >1msw_D DNA-directed RNA polymerase, bacteriophage T7 RNA; T7RNAP elongation complex, transcription/DNA/RNA complex; 2.10A {Enterobacteria phage T7} SCOP: e.8.1.3 PDB: 1h38_A 1cez_A 1qln_A* 1s0v_A* 1s76_D* 1s77_D* 4rnp_A 3e2e_A* 3e3j_C* 1aro_P 2pi4_A* 2pi5_A Length = 883 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >3q23_A Virion RNA polymerase; protein-DNA complex; HET: DNA G2P; 1.80A {Enterobacteria phage N4} PDB: 3q0a_A* 3q22_A* 3q24_A* 3c3l_A 3c46_A 3c2p_A* 2po4_A Length = 1118 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 986 | |||
| 1msw_D | 883 | DNA-directed RNA polymerase, bacteriophage T7 RNA; | 100.0 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 100.0 | |
| 3q23_A | 1118 | Virion RNA polymerase; protein-DNA complex; HET: D | 97.3 |
| >1msw_D DNA-directed RNA polymerase, bacteriophage T7 RNA; T7RNAP elongation complex, transcription/DNA/RNA complex; 2.10A {Enterobacteria phage T7} SCOP: e.8.1.3 PDB: 1h38_A 1cez_A 1qln_A* 1s0v_A* 1s76_D* 1s77_D* 4rnp_A 3e2e_A* 3e3j_C* 1aro_P 2pi4_A* 2pi5_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-198 Score=1779.93 Aligned_cols=774 Identities=28% Similarity=0.461 Sum_probs=669.1
Q ss_pred hhhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCChhHHHHHHHHHHHHHHHHHHHHHHHh-hccCcc
Q 001982 168 REMKKRKFN-LLRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSEAIEREQKMQR-TKKQKA 245 (986)
Q Consensus 168 ~~~~~~~~~-~l~~RQ~~lE~~~~~~a~~r~~~~~~~~~~~g~a~~~~~~~~ll~~w~~~L~~~I~~e~~~~~-~~~~r~ 245 (986)
.+.-...|+ .|++||++||++++++|++||++++++++++|+++++|++++++.+|+++|+++|+++++..+ +.|.++
T Consensus 21 ~~~~~~~~~~~l~~rQ~~lE~e~~~~a~~r~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~l~~~i~~~~~~~~~~~g~~~ 100 (883)
T 1msw_D 21 FNTLADHYGERLAREQLALEHESYEMGEARFRKMFERQLKAGEVADNAAAKPLITTLLPKMIARINDWFEEVKAKRGKRP 100 (883)
T ss_dssp HHHHTTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCGGGSTTTHHHHHHHHHHHHHHHHHHHHHHHHSCSCCC
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccCChhhHHHHHHHHHHHHHHHHHHHHHHhcccCcch
Confidence 344456676 678999999999999999999999999999999999999999999999999999999988776 356789
Q ss_pred chhhhhccCChhHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHH
Q 001982 246 AYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKE 325 (986)
Q Consensus 246 ~y~p~L~~l~~e~lA~Iti~~~l~~~~~~~~~~~~~~~~~~~~IG~aVe~E~~~~~~~~k~~~~~~~~~~~~~~~~~~~~ 325 (986)
.|+|||++|+||++|+|||+++|+++++ ++++++++++.+||++||+|++++++.++.++++.+..
T Consensus 101 ~~~~~L~~l~~e~lA~iti~~~l~~~~~---~~~~~~~~~~~~iG~ave~E~~~~~~~~~~~~~~~~~~----------- 166 (883)
T 1msw_D 101 TAFQFLQEIKPEAVAYITIKTTLACLTS---ADNTTVQAVASAIGRAIEDEARFGRIRDLEAKHFKKNV----------- 166 (883)
T ss_dssp TTTTTTTSSCHHHHHHHHHHHHHHHHHH---CSCCBHHHHHHHHHHHHHHHHHHHHHHHSSCSSHHHHT-----------
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHhcc---cCCccHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH-----------
Confidence 9999999999999999999999999987 35789999999999999999999998877655433211
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh-c-----CCCCCCCCHHHHHHHHHHHHHHHHHH-ccccCCCCCCCCCCCCccCcee
Q 001982 326 KELLRKRVNSLIKSKRVMEAQKLL-K-----NEETKPWGRDTQAKLGSRLVELLIET-AYVQHPVNPADYSPPDVRPAFR 398 (986)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~-~-----~~~~~~W~~~~~~kvG~~Li~~L~e~-~~i~~~~~~~~~~~~~~~paF~ 398 (986)
.+.++++.+...++...+.+.... + ++++.+|+..++++||++|+++|+++ +.|++....
T Consensus 167 ~~~l~~~~~~~~k~~~~~~~~~~~~~~g~~~~~~~~~W~~~~~~~vG~~Li~~l~~~~~~~~~~~~~------------- 233 (883)
T 1msw_D 167 EEQLNKRVGHVYKKAFMQVVEADMLSKGLLGGEAWSSWHKEDSIHVGVRCIEMLIESTGMVSLHRQN------------- 233 (883)
T ss_dssp SHHHHHSCSHHHHHHHHHHHHHHSTTTTTTTTCCCCCCCTTHHHHHHHHHHHHHHHHCTTEEEECC--------------
T ss_pred HHHHHhcccHHHHHHHHHHHHHHhhhccccccCCCCCCCHHHHHHHHHHHHHHHHHhhCCcceeccc-------------
Confidence 123333333333333333333311 1 26788999999999999999999995 666653211
Q ss_pred EeeeeeecCCCCCcceeEEEEecCHHHHHHHHhhh---hcccCCCCcceeCCCCCcCCCCcccccC---CccceecCCcH
Q 001982 399 HRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSA---KHMLIPYVPMLVPPKKWKGYNKGGYLFL---PSYVMRTHGSR 472 (986)
Q Consensus 399 h~~~~~~~~~g~~~~k~~gvi~~~~~~~~~l~~~~---~~~~~~~lPMlvpP~pW~~~~~GGYl~~---~s~l~R~~~~~ 472 (986)
.|. .++++|+|++||++++.+.+.. ..+.+.+|||||||+||+++.+||||+. +..++|+..
T Consensus 234 ---------~~~-~~k~~~~i~~~~~~~~~l~~~~~~~~~~~~~~lPMlvpP~pW~~~~~GGYl~~~~~~~~~ir~~~-- 301 (883)
T 1msw_D 234 ---------AGV-VGQDSETIELAPEYAEAIATRAGALAGISPMFQPCVVPPKPWTGITGGGYWANGRRPLALVRTHS-- 301 (883)
T ss_dssp -----------------CCEEEECHHHHHHHHHHHHHHTTSCCCCCCBSSCCBCCSSSBSCBSSSCCSSCCBSEECSS--
T ss_pred ---------cCC-CCceeeEEEeCHHHHHHHhhcccchhhcCCCCCceeeCCccCCCCCCCCccCCCcccchhhcccC--
Confidence 121 1367899999999999997643 2345569999999999999999999974 345667653
Q ss_pred HHHHHHHhccccChHHHHHHHHhhcCcceEEcHHHHHHHHHHHH-cCCCCCCCCCCCCCCCCCCCCCCC--HHHHHHHHH
Q 001982 473 KQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWV-SGGNIAGLVDRNDVLIPEKPLSED--MTEVQKWKW 549 (986)
Q Consensus 473 ~q~~~l~~~~~~~l~~v~~aLN~Lqst~wrIN~~VL~vi~~~w~-~g~~i~~l~~~~~~p~P~~p~~~d--~~~~~~wk~ 549 (986)
+.++++..+++++.||++||+||+|||+||++||+||+++|+ +|+++++||+..+.|+|++|++.+ ++++++|++
T Consensus 302 --~~~~~~~~~~~l~~v~~aLN~L~~t~w~IN~~vL~vi~~~~~~~g~~~~~ip~~~~~~~P~~p~~~d~~~~~~~~~k~ 379 (883)
T 1msw_D 302 --KKALMRYEDVYMPEVYKAINIAQNTAWKINKKVLAVANVITKWKHCPVEDIPAIEREELPMKPEDIDMNPEALTAWKR 379 (883)
T ss_dssp --TTHHHHTTTCCCHHHHHHHHHHHTCCEEECHHHHHHHHHHTTCSSCSSTTCCCSSCCCCCCC-----------CCTTH
T ss_pred --HHHHHhccccchHHHHHHHHHhccCCeEecHHHHHHHHHHHhhcCCcccCCCCcCcCCCCCCCCccccCHHHHHHHHH
Confidence 244666677899999999999999999999999999999999 999999999988899999986543 678899999
Q ss_pred HHHHHHHHHHHhhhhhhhhhHHHHHHHhhcCCCceeecccCCCCCcccCCCCCCCCCCchhhhhhhhcccCccCCcchhh
Q 001982 550 SVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLR 629 (986)
Q Consensus 550 ~~~~~~~~~~~~~S~R~~~~~~L~iA~~f~~~~~fYfPhnlDFRGR~Yp~~~~Ln~qGsDl~RsLL~FaegkpLG~~Gl~ 629 (986)
.++++++.++++||+||+++++|++|++|+|++.||||||+|||||+||+| ||||||+|+|||||+||+|+|||++||+
T Consensus 380 ~~~~~~~~~~~~~S~r~~~~~~L~iA~~f~~~~~fYfPhnlDFRGR~Yp~p-~Ln~~GsDl~RsLL~FaegkpLG~~Gl~ 458 (883)
T 1msw_D 380 AAAAVYRKDKARKSRRISLEFMLEQANKFANHKAIWFPYNMDWRGRVYAVS-MFNPQGNDMTKGLLTLAKGKPIGKEGYY 458 (883)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTTSSSSSCSCBBCCEEEETTSCEEESS-SSCTTSCHHHHHHEEESSCEECHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeecccCCCCcCCCCC-CCCCCcchHHHHHHHhccCCccChhHHH
Confidence 999999999999999999999999999999988999999999999999995 9999999999999999999999999999
Q ss_pred HHHHHHHhhcC------------------------CCCCCCchhhhcCCChHHHHHHHHHHHHHHhcCCCCcceeccccc
Q 001982 630 WLKIHLANLFS------------------------ENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIH 685 (986)
Q Consensus 630 WLKIhlANl~G------------------------~dPl~~~~wW~~AD~PwQfLA~C~El~~a~~s~~P~~y~S~lPV~ 685 (986)
|||||+||+|| +||++ .+||++||+||||||+|+||++|+++|+ +|+||+|||
T Consensus 459 WLkIhlAN~~G~dK~s~~eRi~wv~~n~~~I~dsA~~Pl~-~~wW~~Ad~PwQfLA~C~El~~a~~~~~--~y~S~lPVh 535 (883)
T 1msw_D 459 WLKIHGANCAGVDKVPFPERIKFIEENHENIMACAKSPLE-NTWWAEQDSPFCFLAFCFEYAGVQHHGL--SYNCSLPLA 535 (883)
T ss_dssp HHHHHHHHHTTCCSSCHHHHHHHHHHTHHHHHHHHHCHHH-HCGGGGSSSHHHHHHHHHHHHHHHHHCT--TCEECCCEE
T ss_pred HHHHHHHHhcCCCcCCHHHHHHHHHHHHHHHHHHhcCccc-chHHHcCCcHHHHHHHHHHHHHHHhCCC--ccccccccc
Confidence 99999999999 78998 5899999999999999999999999876 899999999
Q ss_pred ccCCcchhHHHHHhcCChhhhhhcccCCCCCCcchhhHHHHHHHHHHHhhcCCCCCC------C-------------hhH
Q 001982 686 QDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSK------H-------------PQA 746 (986)
Q Consensus 686 qDGSCNGLQHyAAL~rD~~Ga~~VNLip~d~PqDvYs~Va~~V~~~i~~da~~~~~~------~-------------~~~ 746 (986)
|||||||||||||||||.+||++|||+|+|+|||||+.||+.|.+.+++|+.+|.+. + ...
T Consensus 536 qDgSCnGLQHyAALgrD~~ga~~VNL~psd~PqDvYs~Va~~v~~~~~~da~~g~~~~~~~~~d~~~g~i~e~~~~~~~~ 615 (883)
T 1msw_D 536 FDGSCSGIQHFSAMLRDEVGGRAVNLLPSETVQDIYGIVAKKVNEILQADAINGTDNEVVTVTDENTGEISEKVKLGTKA 615 (883)
T ss_dssp EECSCHHHHHHHHHHTCTTHHHHTTCSCCSSCCCHHHHHHHHHHHHHHHHHTTSCCCCCCCSSSSSSCCSSCCCCCCHHH
T ss_pred cCCCCcHHHHHHHHhcChhhhhHhCCCCCCCCcchHHHHHHHHHHHHHHHHhcccccccccccccccccchhhcccchhH
Confidence 999999999999999999999999999999999999999999999999998765321 0 112
Q ss_pred HHHHHhhcccccccccccceeeecccchhhHHHHHHHHHHHcCCCCCh----hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001982 747 LLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDD----RQLFAAACYAAKVTLTALGEIFEAARSI 822 (986)
Q Consensus 747 ~~ak~l~~~i~RKvVKqtVMT~vYGvT~~Gar~QI~~~L~~~~~~~d~----~~~~~~a~Ylak~v~~ai~e~f~~A~~i 822 (986)
..+++|.++|+||+|||||||+|||||++|+++||+++|+++++..++ .....+|+|+|++||+||+++|++|+.|
T Consensus 616 l~~~~l~~~i~RKvvKqtVMT~vYGvT~~Ga~~qI~~~l~~~~~~~~~~~~~~~~~~~a~yla~~i~~ai~~~f~~a~~i 695 (883)
T 1msw_D 616 LAGQWLAYGVTRSVTKRSVMTLAYGSKEFGFRQQVLEDTIQPAIDSGKGLMFTQPNQAAGYMAKLIWESVSVTVVAAVEA 695 (883)
T ss_dssp HHHHHHTTCCCHHHHHHHHHGGGGTCCHHHHHHHHHHHTHHHHHHTSCCCSCSSHHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred HHHHHHhcCCCHHHhccceeeeeeCCcchhhHHHHHHHHhhhhccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346789999999999999999999999999999999999874321111 1234889999999999999999999999
Q ss_pred HHHHHHHHHHHHcC------------CCcEEEEcCCCCeEEEeeccCCceeEEeeeEEEE---EecCC---CcCchhhhh
Q 001982 823 MGWLGDCAKVIASE------------NQPVRWTTPLGLPVVQPYCKNERHLIRTSLQVLA---LQREG---NLVEIRKQR 884 (986)
Q Consensus 823 m~WL~~~A~~i~~~------------~~pV~WtTPlGlpVvQ~Y~k~~~~~I~t~lq~~~---l~~~~---d~vd~rKQ~ 884 (986)
|+||++||++|+++ +.||.|+||+||||+|||++.++++|+|.+|.++ +..+. +++|++||+
T Consensus 696 m~wL~~~a~~i~~~v~~~~~~~~~~~~~pv~W~TPlGlpV~Q~Y~~~~~~~V~t~l~~~~~i~l~~~~~~~~~~d~~Kq~ 775 (883)
T 1msw_D 696 MNWLKSAAKLLAAEVKDKKTGEILRKRCAVHWVTPDGFPVWQEYKKPIQTRLNLMFLGQFRLQPTINTNKDSEIDAHKQE 775 (883)
T ss_dssp HHHHHHHHHHHHSCEECTTTCCEEECCCCEEEECTTSCEEEECCBCCSSCCEECSSSCEECCCCSCSSCCSCCBCHHHHH
T ss_pred HHHHHHHHHHHHhhcccccccccccCCCeEEEECCCCCEEEEEecCCCceEEEEeecceeeEeeecccccccccchHHHh
Confidence 99999999999998 9999999999999999999999999999998653 23332 359999999
Q ss_pred ccCCCcchhhhhhHHHHHHHHHHhhc-CC-cEEEeeccccCCCCChhHHHHHHHHHHHHhcCc-chHHHHHHHHHHhCCC
Q 001982 885 TAFPPNFVHSLDGSHMMMTAVACRDA-GL-HFAGVHDSFWTHACDVDEMNQILRKKFVELYNM-PMLENLLESFQTSYPT 961 (986)
Q Consensus 885 ~Af~PNFIHSLDAsHmmlta~~~~~~-Gi-~FasVHDSFwThA~dvd~m~~ilRe~FV~Lys~-~il~~l~e~f~~~~~~ 961 (986)
+|||||||||||||||||||++|.+. |+ +|++|||||||||||||.|+++|||+||+||++ |+|++|.++|..+|+.
T Consensus 776 ~af~PNFIHSLDAsHmmlta~~~~~~~gl~~fa~VHDsfwTha~dvd~m~~~lRe~FV~lys~~~~L~~l~~~~~~~~~~ 855 (883)
T 1msw_D 776 SGIAPNFVHSQDGSHLRKTVVWAHEKYGIESFALIHDSFGTIPADAANLFKAVRETMVDTYESCDVLADFYDQFADQLHE 855 (883)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCEECSSEEEECGGGHHHHHHHHHHHHHHHHHHCCHHHHHHHHHSSTTTC
T ss_pred cCCCchhHhhHHHHHHHHHHHHHHHhcCCCceEEEeccccCCHhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhcch
Confidence 99999999999999999999999998 99 799999999999999999999999999999999 9999999999999985
Q ss_pred ---CCCCCCCCCCCCChhhhccCCCCCC
Q 001982 962 ---LSFPPLPERGNFDLEEVLESPYFFN 986 (986)
Q Consensus 962 ---~~~p~~P~~G~LDL~~Vl~S~YFF~ 986 (986)
.+||++|++|+|||++|++|+|||+
T Consensus 856 ~~~~~~p~~P~~G~ldl~~Vl~S~YfFs 883 (883)
T 1msw_D 856 SQLDKMPALPAKGNLNLRDILESDFAFA 883 (883)
T ss_dssp TTCCCCCCCCCCCSCCGGGGGTCSSCCC
T ss_pred hhhhcCCCCCCCCCCCHHHHhcCCCCCC
Confidence 5899999999999999999999997
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
| >3q23_A Virion RNA polymerase; protein-DNA complex; HET: DNA G2P; 1.80A {Enterobacteria phage N4} PDB: 3q0a_A* 3q22_A* 4ff1_A 4ff2_A* 4ff3_A* 4ff4_A* 3q24_A* 3c3l_A 3c46_A 3c2p_A* 2po4_A | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 986 | ||||
| d1mswd_ | 882 | e.8.1.3 (D:) T7 RNA polymerase {Bacteriophage T7 [ | 0.0 |
| >d1mswd_ e.8.1.3 (D:) T7 RNA polymerase {Bacteriophage T7 [TaxId: 10760]} Length = 882 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: DNA/RNA polymerases superfamily: DNA/RNA polymerases family: T7 RNA polymerase domain: T7 RNA polymerase species: Bacteriophage T7 [TaxId: 10760]
Score = 674 bits (1740), Expect = 0.0
Identities = 205/886 (23%), Positives = 364/886 (41%), Gaps = 113/886 (12%)
Query: 178 LRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSEAIEREQKM 237
L R Q+ E E++E ++++ + ++ + K L + I +
Sbjct: 31 LAREQLALEHESYEMGEARFRKMFERQLKAGEVADNAAAKPLITTLLPKMIARINDWFEE 90
Query: 238 QRTKK-QKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQE 296
+ K+ ++ ++ + + VA I + + + + V A IG AIE E
Sbjct: 91 VKAKRGKRPTAFQFLQEIKPEAVAYITIKTTLACLTSADNTT---VQAVASAIGRAIEDE 147
Query: 297 IRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNEETKP 356
R + + +K + E++ + + +K ++++ + + LL E
Sbjct: 148 ARFGRIRDLEAKHFKKNV---EEQLNKRVGHVYKKAFMQVVEADMLSKG--LLGGEAWSS 202
Query: 357 WGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTKRY 416
W ++ +G R +E+LIE+ + + +
Sbjct: 203 WHKEDSIHVGVRCIEMLIESTGMVSLH----------------------RQNAGVVGQDS 240
Query: 417 GVVECDPLVLEGLDRSAKHM--LIP-YVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRK 473
+E P E + A + + P + P +VPPK W G GGY + +
Sbjct: 241 ETIELAPEYAEAIATRAGALAGISPMFQPCVVPPKPWTGITGGGYWANGRRPLALVRTH- 299
Query: 474 QQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAG---LVDRNDV 530
++AL M +V++A++ +T W++NK+VL+V I ++R ++
Sbjct: 300 SKKALMRYEDVYMPEVYKAINIAQNTAWKINKKVLAVANVITKWKHCPVEDIPAIEREEL 359
Query: 531 LIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNL 590
+ + + + + WK + + ++ R S+R E L A + + + ++P+N+
Sbjct: 360 PMKPEDIDMNPEALTAWKRAAAAVYRKDKARKSRRISLEFMLEQANKFANHKAIWFPYNM 419
Query: 591 DFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFS---------- 640
D+RGR Y N +D+ +G+L A+G+P+GK G WLKIH AN
Sbjct: 420 DWRGRVYA-VSMFNPQGNDMTKGLLTLAKGKPIGKEGYYWLKIHGANCAGVDKVPFPERI 478
Query: 641 --------------ENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQ 686
++P+ WW + PF LA C + S LP+
Sbjct: 479 KFIEENHENIMACAKSPLEN-TWWAEQDSPFCFLAFCFEYAGVQHH--GLSYNCSLPLAF 535
Query: 687 DGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKH--- 743
DGSC+G+QH++A+ R+ + AVNL+ E D+Y +A +V+EI++ D+
Sbjct: 536 DGSCSGIQHFSAMLRDEVGGRAVNLLPSETVQDIYGIVAKKVNEILQADAINGTDNEVVT 595
Query: 744 ----------------PQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEE 787
+AL + L V R + K++VMT YG G R+Q+ +
Sbjct: 596 VTDENTGEISEKVKLGTKALAGQWLAYGVTRSVTKRSVMTLAYGSKEFGFRQQVLEDTIQ 655
Query: 788 KGHITDDRQLF----AAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASE------- 836
+ +F AA Y AK+ ++ AA M WL AK++A+E
Sbjct: 656 PAIDSGKGLMFTQPNQAAGYMAKLIWESVSVTVVAAVEAMNWLKSAAKLLAAEVKDKKTG 715
Query: 837 -----NQPVRWTTPLGLPVVQPYCKNERHLIRTSL------QVLALQREGNLVEIRKQRT 885
V W TP G PV Q Y K + + Q + + ++ KQ +
Sbjct: 716 EILRKRCAVHWVTPDGFPVWQEYKKPIQTRLNLMFLGQFRLQPTINTNKDSEIDAHKQES 775
Query: 886 AFPPNFVHSLDGSHMMMTAVACRDAG--LHFAGVHDSFWTHACDVDEMNQILRKKFVELY 943
PNFVHS DGSH+ T V + FA +HDSF T D + + +R+ V+ Y
Sbjct: 776 GIAPNFVHSQDGSHLRKTVVWAHEKYGIESFALIHDSFGTIPADAANLFKAVRETMVDTY 835
Query: 944 -NMPMLENLLESFQTSYPTLS---FPPLPERGNFDLEEVLESPYFF 985
+ +L + + F P LP +GN +L ++LES + F
Sbjct: 836 ESCDVLADFYDQFADQLHESQLDKMPALPAKGNLNLRDILESDFAF 881
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 986 | |||
| d1mswd_ | 882 | T7 RNA polymerase {Bacteriophage T7 [TaxId: 10760] | 100.0 | |
| d1qtma2 | 409 | DNA polymerase I (Klenow fragment) {Thermus aquati | 90.96 | |
| d1kfsa2 | 410 | DNA polymerase I (Klenow fragment) {Escherichia co | 87.02 | |
| d2hhva2 | 408 | DNA polymerase I (Klenow fragment) {Bacillus stear | 84.87 |
| >d1mswd_ e.8.1.3 (D:) T7 RNA polymerase {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: DNA/RNA polymerases superfamily: DNA/RNA polymerases family: T7 RNA polymerase domain: T7 RNA polymerase species: Bacteriophage T7 [TaxId: 10760]
Probab=100.00 E-value=1.5e-180 Score=1646.50 Aligned_cols=777 Identities=28% Similarity=0.463 Sum_probs=653.8
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCChhHHHHHHHHHHHHHHHHHHHHHHHhh-ccCc
Q 001982 166 EYREMKKRKFNLLRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSEAIEREQKMQRT-KKQK 244 (986)
Q Consensus 166 ~~~~~~~~~~~~l~~RQ~~lE~~~~~~a~~r~~~~~~~~~~~g~a~~~~~~~~ll~~w~~~L~~~I~~e~~~~~~-~~~r 244 (986)
.+.++...--..|++||++||+++++.|++||++.+++++++|.+++++++++++.+|+++|+++|++++++.+. .|.+
T Consensus 19 ~~~~~~~~~~~~L~~rQ~~LE~ea~~~g~~R~r~~~e~~~~rg~~s~~~~g~~li~~~l~~l~~~I~~~~~~~~~~~G~~ 98 (882)
T d1mswd_ 19 PFNTLADHYGERLAREQLALEHESYEMGEARFRKMFERQLKAGEVADNAAAKPLITTLLPKMIARINDWFEEVKAKRGKR 98 (882)
T ss_dssp HHHHHTTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCGGGSTTTHHHHHHHHHHHHHHHHHHHHHHHHSCSCC
T ss_pred ChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCc
Confidence 344444333445889999999999999999999999999999999999999999999999999999999887654 4677
Q ss_pred cchhhhhccCChhHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHH
Q 001982 245 AAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSK 324 (986)
Q Consensus 245 ~~y~p~L~~l~~e~lA~Iti~~~l~~~~~~~~~~~~~~~~~~~~IG~aVe~E~~~~~~~~k~~~~~~~~~~~~~~~~~~~ 324 (986)
+.|+|||+.|+||++|+|||+++|++++++ +++++++++.+||+|||+|++++++.+.++++..+...
T Consensus 99 ~~~~~yL~~l~pe~lA~Itik~~ld~l~~~---~~~~~t~va~~IG~AVE~E~r~~~~~~~~~~~~~k~~~--------- 166 (882)
T d1mswd_ 99 PTAFQFLQEIKPEAVAYITIKTTLACLTSA---DNTTVQAVASAIGRAIEDEARFGRIRDLEAKHFKKNVE--------- 166 (882)
T ss_dssp CTTTTTTTSSCHHHHHHHHHHHHHHHHHHC---SCCBHHHHHHHHHHHHHHHHHHHHHHHSSCSSHHHHTS---------
T ss_pred chHHHHHhcCCHHHHHHHHHHHHHHHhcCC---CCChHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHhhH---------
Confidence 889999999999999999999999999874 35689999999999999999999988776654433211
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH------hhcCCCCCCCCHHHHHHHHHHHHHHHHHHccccCCCCCCCCCCCCccCcee
Q 001982 325 EKELLRKRVNSLIKSKRVMEAQK------LLKNEETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFR 398 (986)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~W~~~~~~kvG~~Li~~L~e~~~i~~~~~~~~~~~~~~~paF~ 398 (986)
+.++++.+...+++.++.++. ...++.|.+|+..+++|||++|+++|++++.+......
T Consensus 167 --~~~~k~~~~~~kk~~~~~~~~~~~~~~~~~~~~w~~W~~~~r~kVG~~Lle~l~e~tg~~~~~~~------------- 231 (882)
T d1mswd_ 167 --EQLNKRVGHVYKKAFMQVVEADMLSKGLLGGEAWSSWHKEDSIHVGVRCIEMLIESTGMVSLHRQ------------- 231 (882)
T ss_dssp --HHHHHSCSHHHHHHHHHHHHHHSTTTTTTTTCCCCCCCTTHHHHHHHHHHHHHHHHCTTEEEECC-------------
T ss_pred --HHHHHHhhHHHHHHHHHHHHHHHHHhhhccccccCccCHHHHHHHHHHHHHHHHHHhCCceeecc-------------
Confidence 122233333333333333321 12336789999999999999999999999875321110
Q ss_pred EeeeeeecCCCCCcceeEEEEecCHHHHHHHHhhhhc--ccCC-CCcceeCCCCCcCCCCcccccCCc---cceecCCcH
Q 001982 399 HRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKH--MLIP-YVPMLVPPKKWKGYNKGGYLFLPS---YVMRTHGSR 472 (986)
Q Consensus 399 h~~~~~~~~~g~~~~k~~gvi~~~~~~~~~l~~~~~~--~~~~-~lPMlvpP~pW~~~~~GGYl~~~s---~l~R~~~~~ 472 (986)
..|. .+++.+++.++|++.+.++..... ...| +|||||||+||++..+||||+... .++|++..
T Consensus 232 --------~~~~-~~k~~~~v~~t~~~~~~l~~~~~~~~~~~P~~lPMlvpP~pW~~~~~GGYl~~~~~~~~~~~~~~~- 301 (882)
T d1mswd_ 232 --------NAGV-VGQDSETIELAPEYAEAIATRAGALAGISPMFQPCVVPPKPWTGITGGGYWANGRRPLALVRTHSK- 301 (882)
T ss_dssp -----------------CCEEEECHHHHHHHHHHHHHHTTSCCCCCCBSSCCBCCSSSBSCBSSSCCSSCCBSEECSST-
T ss_pred --------cccc-ccCcCcceeecHHHHHHHHhhHhHHHhcCcccccccCCCccCCCCCcCCeeecCCCceeccccccH-
Confidence 0121 146778899999999988764322 2344 999999999999999999998654 35555432
Q ss_pred HHHHHHHhccccChHHHHHHHHhhcCcceEEcHHHHHHHHHHHH-cCCCCCCCCCCCCCCCCCCCC--CCCHHHHHHHHH
Q 001982 473 KQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWV-SGGNIAGLVDRNDVLIPEKPL--SEDMTEVQKWKW 549 (986)
Q Consensus 473 ~q~~~l~~~~~~~l~~v~~aLN~Lqst~wrIN~~VL~vi~~~w~-~g~~i~~l~~~~~~p~P~~p~--~~d~~~~~~wk~ 549 (986)
.++.+....+++.+|++||+||+|||+||++||+|++++|+ .|+.++++|+....+.|++|. +.+++++++|++
T Consensus 302 ---~~~~~~~~~~l~~v~~aLN~LQst~wrIN~~vLdv~~~~~~~~~~~~~~iP~~~~~~~p~~~~~~~~~~~~~~~~~~ 378 (882)
T d1mswd_ 302 ---KALMRYEDVYMPEVYKAINIAQNTAWKINKKVLAVANVITKWKHCPVEDIPAIEREELPMKPEDIDMNPEALTAWKR 378 (882)
T ss_dssp ---THHHHTTTCCCHHHHHHHHHHHTCCEEECHHHHHHHHHHTTCSSCSSTTCCCSSCCCCCCC-----------CCTTH
T ss_pred ---hhhhhccccchHHHHHHHHHHhcCCeEeCHHHHHHHHHHHhcCCCcccccCcccccccCCcccccccCHHHHHHHHH
Confidence 23444556789999999999999999999999999999998 556688888877666676664 446778999999
Q ss_pred HHHHHHHHHHHhhhhhhhhhHHHHHHHhhcCCCceeecccCCCCCcccCCCCCCCCCCchhhhhhhhcccCccCCcchhh
Q 001982 550 SVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLR 629 (986)
Q Consensus 550 ~~~~~~~~~~~~~S~R~~~~~~L~iA~~f~~~~~fYfPhnlDFRGR~Yp~~~~Ln~qGsDl~RsLL~FaegkpLG~~Gl~ 629 (986)
..+++++.+.+.+|+||+++++|++|++|+|+++||||||+|||||+||+ |+|||||+|+|||||+||+|+|||++|++
T Consensus 379 ~~~~~~~~~~~~~s~r~~~~~~l~~A~~~~~~~~fy~P~~~DfRGR~Y~~-~~ln~qg~D~~rsLl~Fa~~~~l~~~g~~ 457 (882)
T d1mswd_ 379 AAAAVYRKDKARKSRRISLEFMLEQANKFANHKAIWFPYNMDWRGRVYAV-SMFNPQGNDMTKGLLTLAKGKPIGKEGYY 457 (882)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTTSSSSSCSCBBCCEEEETTSCEEES-SSSCTTSCHHHHHHEEESSCEECHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCCceeeeeeeecccccccC-CCCCCCccchhhhhhhccCCCcccchhHH
Confidence 99999999999999999999999999999998889999999999999997 58999999999999999999999999999
Q ss_pred HHHHHHHhhcC------------------------CCCCCCchhhhcCCChHHHHHHHHHHHHHHhcCCCCcceeccccc
Q 001982 630 WLKIHLANLFS------------------------ENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIH 685 (986)
Q Consensus 630 WLKIhlANl~G------------------------~dPl~~~~wW~~AD~PwQfLA~C~El~~a~~s~~P~~y~S~lPV~ 685 (986)
|||||+||+|| +||+++ .||.+||+||||||+|+||++++.++ +.|+|+||||
T Consensus 458 wL~i~~An~~g~dK~s~~~r~~w~~~~~~~i~~~~~dp~~~-~~w~~a~~p~qfla~c~e~~~~~~~~--~~~~s~lpv~ 534 (882)
T d1mswd_ 458 WLKIHGANCAGVDKVPFPERIKFIEENHENIMACAKSPLEN-TWWAEQDSPFCFLAFCFEYAGVQHHG--LSYNCSLPLA 534 (882)
T ss_dssp HHHHHHHHHTTCCSSCHHHHHHHHHHTHHHHHHHHHCHHHH-CGGGGSSSHHHHHHHHHHHHHHHHHC--TTCEECCCEE
T ss_pred HHHHHHHhccCcchhhHHHHHHHHHHhHHHHHhhhcCcchh-hhhhhCchhHHHHHHHHHHHHHHhcC--Ccccccceee
Confidence 99999999999 689974 89999999999999999999999865 6799999999
Q ss_pred ccCCcchhHHHHHhcCChhhhhhcccCCCCCCcchhhHHHHHHHHHHHhhcCCCCCCC-------------------hhH
Q 001982 686 QDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKH-------------------PQA 746 (986)
Q Consensus 686 qDGSCNGLQHyAAL~rD~~Ga~~VNLip~d~PqDvYs~Va~~V~~~i~~da~~~~~~~-------------------~~~ 746 (986)
||||||||||||||+||..||++|||+|+|+|+|||+.||+.|.+.+++|+..+.+.. ...
T Consensus 535 ~D~scnG~Qh~aal~~d~~~a~~vNL~p~~~p~DvY~~va~~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 614 (882)
T d1mswd_ 535 FDGSCSGIQHFSAMLRDEVGGRAVNLLPSETVQDIYGIVAKKVNEILQADAINGTDNEVVTVTDENTGEISEKVKLGTKA 614 (882)
T ss_dssp EECSCHHHHHHHHHHTCTTHHHHTTCSCCSSCCCHHHHHHHHHHHHHHHHHTTSCCCCCCCSSSSSSCCSSCCCCCCHHH
T ss_pred eccCccHHHHHHHHhcCHHHHHhcCCCCCCCCccHHHHHHHHHHHHHHHhhhccccccccccccccccchhhhcccchHH
Confidence 9999999999999999999999999999999999999999999999999987653321 233
Q ss_pred HHHHHhhcccccccccccceeeecccchhhHHHHHHHHHHHcCCC----CChhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001982 747 LLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHI----TDDRQLFAAACYAAKVTLTALGEIFEAARSI 822 (986)
Q Consensus 747 ~~ak~l~~~i~RKvVKqtVMT~vYGvT~~Gar~QI~~~L~~~~~~----~d~~~~~~~a~Ylak~v~~ai~e~f~~A~~i 822 (986)
..++|+..+|+||+|||+|||+|||||++|+++||.++|.+.+.. ....+.+.++.|+|++||++|+++|++|+.+
T Consensus 615 ~~~~~l~~~i~Rk~vK~~vMT~~YG~t~~g~~~qi~~~l~~~~~~~~~~~~~~~~~~~~~yla~~i~~~i~~~~~~a~~~ 694 (882)
T d1mswd_ 615 LAGQWLAYGVTRSVTKRSVMTLAYGSKEFGFRQQVLEDTIQPAIDSGKGLMFTQPNQAAGYMAKLIWESVSVTVVAAVEA 694 (882)
T ss_dssp HHHHHHTTCCCHHHHHHHHHGGGGTCCHHHHHHHHHHHTHHHHHHTSCCCSCSSHHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred HHHHHhhcccchhhhccceeeeecccchhhHHHHHHHHHhhhcccccccccccchhHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 456788889999999999999999999999999999998664211 1112457889999999999999999999999
Q ss_pred HHHHHHHHHHHHc------------CCCcEEEEcCCCCeEEEeeccCCceeEEeeeEE-EEEe-----cCCCcCchhhhh
Q 001982 823 MGWLGDCAKVIAS------------ENQPVRWTTPLGLPVVQPYCKNERHLIRTSLQV-LALQ-----REGNLVEIRKQR 884 (986)
Q Consensus 823 m~WL~~~A~~i~~------------~~~pV~WtTPlGlpVvQ~Y~k~~~~~I~t~lq~-~~l~-----~~~d~vd~rKQ~ 884 (986)
|+||++||++|++ .+.||.||||+||||+|+|++..+++|+|.++. ..+. ..++++|++||+
T Consensus 695 m~wl~~~a~~i~~~~~~~~~~~~~~~~~pv~W~TP~G~pV~Q~Y~k~~~~~v~t~l~~~~~~~~~~~~~~~~~~d~~Kq~ 774 (882)
T d1mswd_ 695 MNWLKSAAKLLAAEVKDKKTGEILRKRCAVHWVTPDGFPVWQEYKKPIQTRLNLMFLGQFRLQPTINTNKDSEIDAHKQE 774 (882)
T ss_dssp HHHHHHHHHHHHSCEECTTTCCEEECCCCEEEECTTSCEEEECCBCCSSCCEECSSSCEECCCCSCSSCCSCCBCHHHHH
T ss_pred HHHHHHHHHHHHHhhhhhhhhHHhcCCCeEEEECCCCCEEEEEecCCCcEEEEEEeccceEEEeeeccCCCCCCChhHhc
Confidence 9999999999985 477999999999999999999999999998643 2221 234579999999
Q ss_pred ccCCCcchhhhhhHHHHHHHHHHhhc-CC-cEEEeeccccCCCCChhHHHHHHHHHHHHhcC-cchHHHHHHHHHHhCCC
Q 001982 885 TAFPPNFVHSLDGSHMMMTAVACRDA-GL-HFAGVHDSFWTHACDVDEMNQILRKKFVELYN-MPMLENLLESFQTSYPT 961 (986)
Q Consensus 885 ~Af~PNFIHSLDAsHmmlta~~~~~~-Gi-~FasVHDSFwThA~dvd~m~~ilRe~FV~Lys-~~il~~l~e~f~~~~~~ 961 (986)
+|||||||||||||||||||++|.+. |+ +|++|||||||||||||.|+++||++||+||+ .|+|++|.++|..+++.
T Consensus 775 ~a~~PNfIHSlDAshm~~t~~~~~~~~g~~~fa~VHDsf~tha~dv~~m~~~lRe~Fv~ly~~~~~l~~~~~~~~~~~~~ 854 (882)
T d1mswd_ 775 SGIAPNFVHSQDGSHLRKTVVWAHEKYGIESFALIHDSFGTIPADAANLFKAVRETMVDTYESCDVLADFYDQFADQLHE 854 (882)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCEECSSEEEECGGGHHHHHHHHHHHHHHHHHHCCHHHHHHHHHSSTTTC
T ss_pred cccCcHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEeeCCCCCcccHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHcch
Confidence 99999999999999999999999764 87 99999999999999999999999999999995 59999999999999986
Q ss_pred C---CCCCCCCCCCCChhhhccCCCCCC
Q 001982 962 L---SFPPLPERGNFDLEEVLESPYFFN 986 (986)
Q Consensus 962 ~---~~p~~P~~G~LDL~~Vl~S~YFF~ 986 (986)
. ++|++|++|+|||++|++|+||||
T Consensus 855 ~~~~~~p~~P~~G~lDl~~V~~S~YfFs 882 (882)
T d1mswd_ 855 SQLDKMPALPAKGNLNLRDILESDFAFA 882 (882)
T ss_dssp TTCCCCCCCCCCCSCCGGGGGTCSSCCC
T ss_pred hhcccCCCCCCCCCcCHHHhcCCcCCCC
Confidence 4 689999999999999999999997
|
| >d1qtma2 e.8.1.1 (A:423-831) DNA polymerase I (Klenow fragment) {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
| >d1kfsa2 e.8.1.1 (A:519-928) DNA polymerase I (Klenow fragment) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d2hhva2 e.8.1.1 (A:469-876) DNA polymerase I (Klenow fragment) {Bacillus stearothermophilus, newly identified strain as yet unnamed [TaxId: 1422]} | Back information, alignment and structure |
|---|