Citrus Sinensis ID: 001987
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 985 | 2.2.26 [Sep-21-2011] | |||||||
| Q9FGS8 | 1027 | C2 and GRAM domain-contai | yes | no | 0.980 | 0.940 | 0.553 | 0.0 | |
| Q9ZVT9 | 1020 | C2 and GRAM domain-contai | no | no | 0.968 | 0.935 | 0.479 | 0.0 | |
| Q8K0T7 | 2210 | Protein unc-13 homolog C | yes | no | 0.121 | 0.054 | 0.317 | 1e-08 | |
| Q8NB66 | 2214 | Protein unc-13 homolog C | yes | no | 0.121 | 0.054 | 0.317 | 1e-08 | |
| Q62770 | 2204 | Protein unc-13 homolog C | yes | no | 0.121 | 0.054 | 0.317 | 1e-08 | |
| Q9Z1N9 | 1602 | Protein unc-13 homolog B | no | no | 0.121 | 0.074 | 0.324 | 2e-08 | |
| P27715 | 2155 | Phorbol ester/diacylglyce | no | no | 0.121 | 0.055 | 0.317 | 3e-08 | |
| Q62769 | 1622 | Protein unc-13 homolog B | no | no | 0.121 | 0.073 | 0.317 | 6e-08 | |
| O14795 | 1591 | Protein unc-13 homolog B | no | no | 0.121 | 0.075 | 0.317 | 1e-07 | |
| Q62768 | 1735 | Protein unc-13 homolog A | no | no | 0.121 | 0.069 | 0.310 | 2e-07 |
| >sp|Q9FGS8|C2GR2_ARATH C2 and GRAM domain-containing protein At5g50170 OS=Arabidopsis thaliana GN=At5g50170 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 1129 bits (2921), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 565/1020 (55%), Positives = 745/1020 (73%), Gaps = 54/1020 (5%)
Query: 5 RLYVYVLQGQDLLAKDSYVKVQIGKHKSKSRILKNNSNPVWNEEFVFRVHNIDDEELVVS 64
RLYVY+LQ +DL AK+++ K+ +G+HKSK+R+ ++ S+P+WNEEFVFR+ ++D+ + VV
Sbjct: 2 RLYVYILQAKDLPAKETFAKLHVGRHKSKTRVARDTSSPIWNEEFVFRISDVDEGDDVVV 61
Query: 65 VFQHND--DSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTNKDCGK 122
H++ D S+G L+G+VR+P++S+AAE+N L PTWF +E P KF N +CGK
Sbjct: 62 SILHHEQQDHQSIVSTG-LIGKVRIPLTSVAAEENQTLLPTWFVIEKPSDGKFVNIECGK 120
Query: 123 ILLTISLNGKGHNLSSNRLLYLHSNVSSNES-KELE-DPCVLSHDVSCSKAPCLDVTEGN 180
ILL++SL GK + S ++L ++ + E KELE P L +S +G
Sbjct: 121 ILLSLSLQGKWESTSGEKVLNDKQDIINLEGVKELEGSPKDL---ISSRDGKRRKHHDGK 177
Query: 181 HLMKAMVSHLEKIFNKNDQGLKT--EDSSELSSTPSDYEDCVEEHPPSHN---FEEAIKM 235
H+MK +V+H++K+F+K ++ K ++SS S S+YED ++ S FEE + +
Sbjct: 178 HIMKNIVNHIDKLFHKKEEISKRLHDESSVGQSVNSNYEDATDQCSSSATCTGFEEGLDL 237
Query: 236 MQSRENEGD-MPENLQGGILLDQLYQVSPCDLNTFLFAPDSQFRKDLAELQGTKDVQEGP 294
MQS ++E + MPENL GG+L+DQ Y VSPC+LN FLF P SQFRK+LAELQG DVQEGP
Sbjct: 238 MQSSDSEREEMPENLTGGVLVDQKYLVSPCELNKFLFTPSSQFRKELAELQGLSDVQEGP 297
Query: 295 WEWKSGEMTCLTRAVSYMKAATKLVKAVKATEQQTYLKANGQEFAILVTVSTPDVPYGNT 354
W + LTR V+YM+AATK+VKAVKATE Q Y KA+G++FA+ V+VSTPDVPYGNT
Sbjct: 298 WTMMQEDTPRLTRVVTYMRAATKMVKAVKATENQVYRKASGKQFAVFVSVSTPDVPYGNT 357
Query: 355 FNVQLLYKIIPGPELSSGEDSSHLIISWGIDFHQSTMMRGMIEGGARQGLKESFEQFANL 414
F ++LLYKI+P E ++G ++S LIISWGI F QST+M+GMIEGGARQGLKESFEQF+NL
Sbjct: 358 FKIELLYKILPETEPTAGGEASRLIISWGIQFSQSTIMKGMIEGGARQGLKESFEQFSNL 417
Query: 415 LAQNLKILDSKDASDKDHMLATLQTEQQSDWELASEYFWNFTVVSAGFMILYVVVHILLC 474
LA+ K LD DK+ ++AT+Q+E ++D + A YFW+ +V+ A + +YVVVH+L C
Sbjct: 418 LAKTYKTLDPAVVLDKEQVIATVQSEPKTDLKSAFLYFWSSSVICAVLLSVYVVVHMLHC 477
Query: 475 EPSKRQGLEFYGLDLPDSFGELISCGILVIQLEQVFNMVGHFVRARLRKGSDHGVKAQGD 534
EPSK QG EFYGLDLPDSFGEL S GILV+ LE+V+ M HFV+ARL +G D GVKA G
Sbjct: 478 EPSKIQGFEFYGLDLPDSFGELFSSGILVLLLERVYIMTVHFVQARLHRGRDQGVKANGK 537
Query: 535 GWVLTVALVEGVNLASSEMTGLSDPYVVFTCNGKTRTSSVQLQTCDPQWHDILEFDAMEE 594
GW+LT+AL++G NLAS E T L DPYVVFTCNGKTRTSSV+LQ DPQW++++EFDAMEE
Sbjct: 538 GWILTIALIKGTNLASVEATELFDPYVVFTCNGKTRTSSVKLQAQDPQWNEVIEFDAMEE 597
Query: 595 PPSVLDVEVFDFDGPFDQATSLGHAEINFLKHTSTELADMWVSLEGKLAQSAQSKVHLRI 654
PPSVLDVEVFDFDGPFDQ SLGHAEINFLKHT+ ELAD+ V+L G AQ++QSK+ LRI
Sbjct: 598 PPSVLDVEVFDFDGPFDQGASLGHAEINFLKHTADELADLSVALVGNHAQASQSKLQLRI 657
Query: 655 FLENNNGVETIKEYLTKMEKEVGKK----------------------------------- 679
FLEN NGVET+K+YL+K+EKEVGKK
Sbjct: 658 FLENKNGVETMKDYLSKVEKEVGKKLNIRSPQKNSAFQKLFGLPHEEFLLKEYTCYLKRK 717
Query: 680 ----GRLFLSARIVGFYANLFGNKTKFFFLWEDIEDIQILSPSLATVGSPSLVIILWKGR 735
G+LFLSARIV FY+N+FG+KTKF+FLWEDI+DIQ+L P+ A++GSP L+IIL K R
Sbjct: 718 LPVQGKLFLSARIVAFYSNVFGHKTKFYFLWEDIDDIQVLPPTFASLGSPLLLIILKKNR 777
Query: 736 GLDARHGAKSQDEEGRLRFYFQSFVSFNDASRTIMALWRSRTLTAYQKEQIAEEQQVQEE 795
GLDA+HGAKSQD+EGRL FYFQSFVSF+ SRTIMALW++RTL+ + QI EE Q +
Sbjct: 778 GLDAKHGAKSQDDEGRLSFYFQSFVSFDATSRTIMALWKTRTLSVDHRAQIVEEDQDVAD 837
Query: 796 MSTAADRGSVPNFEDA-KMSKVYNAELPISVKALMEMFDGGKLEHQVMEKSGCHNYVTTP 854
+ +V + DA MSKVY +LP V+ +M++F GG+LE ++MEKSGC +Y +T
Sbjct: 838 PFLLPEAVTVVSDADALMMSKVYTCDLPCDVELVMKIFGGGELERKIMEKSGCLSYASTT 897
Query: 855 WDLVKPGVCERHLSYRFNRHVSIFGGEVTCTQQKSPLASGEGWIVNEVMSLHDVPFDDHF 914
W+ KPGV ER LSY++N +VS+FGG VTC QQKSP + EGWI+NE+++LHDVPF DHF
Sbjct: 898 WESKKPGVYERRLSYKYNHYVSVFGGGVTCAQQKSPAPNDEGWILNEIVALHDVPFGDHF 957
Query: 915 RVHFRYEIEKSPLAHNACKCAIYIGISWLKSTKFQQRITQNITEKFTHRLKEMIELVERE 974
RVH RYE++K+ + KC +Y+ I WLK+ KF+QRI+++I EKF +R K + +L ++E
Sbjct: 958 RVHIRYEVKKAGVDCKTSKCEVYLKIRWLKTIKFEQRISKSIMEKFRNRFKVIFDLFQKE 1017
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9ZVT9|C2GR1_ARATH C2 and GRAM domain-containing protein At1g03370 OS=Arabidopsis thaliana GN=At1g03370 PE=2 SV=4 | Back alignment and function description |
|---|
Score = 945 bits (2443), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 498/1038 (47%), Positives = 682/1038 (65%), Gaps = 84/1038 (8%)
Query: 5 RLYVYVLQGQDLLA------KDSYVKVQIGKHKSKSRILKNNSNPVWNEEFVFRVHNIDD 58
+L V V++ ++L A D YV++Q+GK +S+++++K N NP W E+F F V +++D
Sbjct: 2 KLQVRVVEARNLPAMDLNGFSDPYVRLQLGKQRSRTKVVKKNLNPKWTEDFSFGVDDLND 61
Query: 59 EELVVSVFQHNDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTNK 118
E LVVSV D+ F + +G+VRV VS + +N L W+ L PK +K + K
Sbjct: 62 E-LVVSVL---DEDKYFND--DFVGQVRVSVSLVFDAENQSLGTVWYPL-NPK-KKGSKK 113
Query: 119 DCGKILLTISLNGKGHNLSSNRLLYLHSN-----VSSNESKELEDPCVLSHDVSCSKAPC 173
DCG+ILL I + K N +L L S+ S + LE P D S +P
Sbjct: 114 DCGEILLKICFSQK------NSVLDLTSSGDQTSASRSPDLRLESPI----DPSTCASPS 163
Query: 174 LDVTEGNHLMKAMVSHLEKIFNKN-------DQGLKTEDSSELS--STPSDYEDCVEEHP 224
+ +IF KN ++ D+S+LS S P + E+
Sbjct: 164 RSDDASSIPQTTFAGRFTQIFQKNAITATPTQSSSRSIDASDLSEISKPVFSLELSEDES 223
Query: 225 PSHNFEEAIKMMQSRENEGDMPENLQGGILLDQLYQVSPCDLNTFLFAPDSQFRKDLAEL 284
S +FEE +K M+S++ + P NL GG+++DQL+ +SP DLN LFA DS F L EL
Sbjct: 224 SSTSFEELLKAMESKDQGSEPPSNLSGGVVVDQLFMISPSDLNIVLFASDSSFYASLTEL 283
Query: 285 QGTKDVQEGPWEWKS-GEMTCLTRAVSYMKAATKLVKAVKATEQQTYLKANGQEFAILVT 343
QGT +VQ GPW+ ++ GE + R VSY+KAATKL+KAVK TE+QTYLKA+G+ +A+L +
Sbjct: 284 QGTTEVQIGPWKAENDGE--SVKRVVSYLKAATKLIKAVKGTEEQTYLKADGEVYAVLAS 341
Query: 344 VSTPDVPYGNTFNVQLLYKIIPGPELSSGEDSSHLIISWGIDFHQSTMMRGMIEGGARQG 403
V+TPDVP+G TF V++LY I PGPEL SGE S L++SW ++F QSTMMRGMIE GARQG
Sbjct: 342 VATPDVPFGGTFKVEVLYCISPGPELPSGEQCSRLVVSWRLNFLQSTMMRGMIENGARQG 401
Query: 404 LKESFEQFANLLAQNLKILDSKDAS-DKDHMLATLQTEQQSDWELASEYFWNFTVVSAGF 462
LK++FEQ+ANLLAQ++K +DSKD +K+ L++LQ E QSDW+LA +YF NFTV+S
Sbjct: 402 LKDNFEQYANLLAQSVKPVDSKDIGLNKEQALSSLQAEPQSDWKLAVQYFANFTVLSTFL 461
Query: 463 MILYVVVHILLCEPSKRQGLEFYGLDLPDSFGELISCGILVIQLEQVFNMVGHFVRARLR 522
+ +YV VHI+ PS QGLEF GLDLPDS GE + G+LV+Q E+V ++ F++AR +
Sbjct: 462 IGIYVFVHIVFAIPSAIQGLEFNGLDLPDSIGEFVVSGVLVLQCERVLQLISRFMQARKQ 521
Query: 523 KGSDHGVKAQGDGWVLTVALVEGVNLASSEMTGLSDPYVVFTCNGKTRTSSVQLQTCDPQ 582
KGSDHG+KA GDGW+LTVAL+EGV+LA+ + +G DPY+VFT NGKTRTSS++ Q +PQ
Sbjct: 522 KGSDHGIKAHGDGWLLTVALIEGVDLAAVDPSGHCDPYIVFTSNGKTRTSSIKFQKSNPQ 581
Query: 583 WHDILEFDAMEEPPSVLDVEVFDFDGPFDQATSLGHAEINFLKHTSTELADMWVSLEGKL 642
W++I EFDAM +PPSVL+VEVFDFDGPFD+A SLGHAE+NF++ ++LAD+WV L+GKL
Sbjct: 582 WNEIFEFDAMADPPSVLNVEVFDFDGPFDEAVSLGHAEVNFVRSNISDLADVWVPLQGKL 641
Query: 643 AQSAQSKVHLRIFLENNNGVETIKEYLTKMEKEVGKK----------------------- 679
AQ+ QSK+HLRIFL++ G + +++YL KMEKEVGKK
Sbjct: 642 AQACQSKLHLRIFLDHTGGGDVVRDYLNKMEKEVGKKINVRSPQTNSAFQKLFGLPQEEF 701
Query: 680 ----------------GRLFLSARIVGFYANLFGNKTKFFFLWEDIEDIQILSPSLATVG 723
GRLFLSARIVGFYA++FGNKTKFFFLWEDIE+IQ+L P+LA++G
Sbjct: 702 LINDFTCHLKRKMPLQGRLFLSARIVGFYASIFGNKTKFFFLWEDIEEIQVLPPTLASMG 761
Query: 724 SPSLVIILWKGRGLDARHGAKSQDEEGRLRFYFQSFVSFNDASRTIMALWRSRTLTAYQK 783
SP +V+ L RGLDAR GAK+ DEEGRL+F+F SFVSFN A +TIMALW++++LT QK
Sbjct: 762 SPIVVMTLRPNRGLDARIGAKTHDEEGRLKFHFHSFVSFNVAQKTIMALWKAKSLTPEQK 821
Query: 784 EQIAEEQQVQEEMSTAADRGSVPNFEDAKMSKVYNAELPISVKALMEMFDGGKLEHQVME 843
Q EE+ Q+ S + G +D + S+V++ LP+ V ME+F GG+++ + ME
Sbjct: 822 VQAVEEESEQKLQS--EESGLFLGVDDVRFSEVFSLTLPVPVSFFMELFGGGEVDRKAME 879
Query: 844 KSGCHNYVTTPWDLVKPGVCERHLSYRFNRHVSIFGGEVTCTQQKSPLASGEGWIVNEVM 903
++GC +Y +PW+ K V ER YR ++ +S + GEVT TQQKS + GW+V EVM
Sbjct: 880 RAGCQSYSCSPWESEKDDVYERQTYYR-DKRISRYRGEVTSTQQKSLVPEKNGWLVEEVM 938
Query: 904 SLHDVPFDDHFRVHFRYEIEKSPLAHNACKCAIYIGISWLKSTKFQQRITQNITEKFTHR 963
+LH VP D+F +H RY++E+S +Y GI WLKST+ Q+R+T+NI R
Sbjct: 939 TLHGVPLGDYFNLHLRYQMEESTSKPKTTYVRVYFGIEWLKSTRHQKRVTKNILVNLQDR 998
Query: 964 LKEMIELVEREILFATQQ 981
LK +E+E QQ
Sbjct: 999 LKMTFGFLEKEYSSRQQQ 1016
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8K0T7|UN13C_MOUSE Protein unc-13 homolog C OS=Mus musculus GN=Unc13c PE=1 SV=3 | Back alignment and function description |
|---|
Score = 62.8 bits (151), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/145 (31%), Positives = 73/145 (50%), Gaps = 25/145 (17%)
Query: 3 STRLYVYVLQGQDLLAKDS------YVKVQIGKHKSKSRILKNNSNPVWNEEFVFRVHNI 56
S ++ + V+ Q L AKD YV VQ+GK+K +++ + N NPVW+E+F F HN
Sbjct: 1215 SAKITITVVSAQGLQAKDKTGSSDPYVTVQVGKNKRRTKTIFGNLNPVWDEKFFFECHNS 1274
Query: 57 DDEELVVSVFQHNDD------SGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETP 110
D + V V+ +DD S + +G+ V V +++ E + W++LE
Sbjct: 1275 TD-RIKVRVWDEDDDIKSRVKQHFKKESDDFLGQTIVEVRTLSGEMD-----VWYNLE-- 1326
Query: 111 KTRKFTNKDC--GKILLTISLNGKG 133
K T+K G I L I++ KG
Sbjct: 1327 ---KRTDKSAVSGAIRLKINVEIKG 1348
|
May play a role in vesicle maturation during exocytosis as a target of the diacylglycerol second messenger pathway. May be involved in the regulation of synaptic transmission at parallel fiber - Purkinje cell synapses. Mus musculus (taxid: 10090) |
| >sp|Q8NB66|UN13C_HUMAN Protein unc-13 homolog C OS=Homo sapiens GN=UNC13C PE=2 SV=3 | Back alignment and function description |
|---|
Score = 62.8 bits (151), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/145 (31%), Positives = 73/145 (50%), Gaps = 25/145 (17%)
Query: 3 STRLYVYVLQGQDLLAKDS------YVKVQIGKHKSKSRILKNNSNPVWNEEFVFRVHNI 56
S ++ + V+ Q L AKD YV VQ+GK+K +++ + N NPVW+E+F F HN
Sbjct: 1219 SAKITITVVSAQGLQAKDKTGSSDPYVTVQVGKNKRRTKTIFGNLNPVWDEKFYFECHNS 1278
Query: 57 DDEELVVSVFQHNDD------SGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETP 110
D + V V+ +DD S + +G+ V V +++ E + W++LE
Sbjct: 1279 TD-RIKVRVWDEDDDIKSRVKQHFKKESDDFLGQTIVEVRTLSGEMD-----VWYNLE-- 1330
Query: 111 KTRKFTNKDC--GKILLTISLNGKG 133
K T+K G I L I++ KG
Sbjct: 1331 ---KRTDKSAVSGAIRLKINVEIKG 1352
|
May play a role in vesicle maturation during exocytosis as a target of the diacylglycerol second messenger pathway. May be involved in the regulation of synaptic transmission at parallel fiber - Purkinje cell synapses. Homo sapiens (taxid: 9606) |
| >sp|Q62770|UN13C_RAT Protein unc-13 homolog C OS=Rattus norvegicus GN=Unc13c PE=1 SV=3 | Back alignment and function description |
|---|
Score = 62.8 bits (151), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/145 (31%), Positives = 73/145 (50%), Gaps = 25/145 (17%)
Query: 3 STRLYVYVLQGQDLLAKDS------YVKVQIGKHKSKSRILKNNSNPVWNEEFVFRVHNI 56
S ++ + V+ Q L AKD YV VQ+GK+K +++ + N NPVW+E+F F HN
Sbjct: 1209 SAKITITVVSAQGLQAKDKTGSSDPYVTVQVGKNKRRTKTIFGNLNPVWDEKFYFECHNS 1268
Query: 57 DDEELVVSVFQHNDD------SGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETP 110
D + V V+ +DD S + +G+ V V +++ E + W++LE
Sbjct: 1269 TD-RIKVRVWDEDDDIKSRVKQHFKKESDDFLGQTIVEVRTLSGEMD-----VWYNLE-- 1320
Query: 111 KTRKFTNKDC--GKILLTISLNGKG 133
K T+K G I L I++ KG
Sbjct: 1321 ---KRTDKSAVSGAIRLKINVEIKG 1342
|
May play a role in vesicle maturation during exocytosis as a target of the diacylglycerol second messenger pathway. May be involved in the regulation of synaptic transmission at parallel fiber - Purkinje cell synapses. Rattus norvegicus (taxid: 10116) |
| >sp|Q9Z1N9|UN13B_MOUSE Protein unc-13 homolog B OS=Mus musculus GN=Unc13b PE=2 SV=2 | Back alignment and function description |
|---|
Score = 62.0 bits (149), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/145 (32%), Positives = 72/145 (49%), Gaps = 25/145 (17%)
Query: 3 STRLYVYVLQGQDLLAKDS------YVKVQIGKHKSKSRILKNNSNPVWNEEFVFRVHNI 56
S ++ + V+ Q L AKD YV VQ+GK K +++ + N NPVW E+F F HN
Sbjct: 611 SAKITITVVCAQGLQAKDKTGSSDPYVTVQVGKTKKRTKTIFGNLNPVWEEKFHFECHNS 670
Query: 57 DDEELVVSVFQHNDD------SGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETP 110
D + V V+ +DD L S + +G+ + V +++ E + W++LE
Sbjct: 671 SD-RIKVRVWDEDDDIKSRVKQRLKRESDDFLGQTIIEVRTLSGEMD-----VWYNLE-- 722
Query: 111 KTRKFTNKDC--GKILLTISLNGKG 133
K T+K G I L IS+ KG
Sbjct: 723 ---KRTDKSAVSGAIRLQISVEIKG 744
|
Plays a role in vesicle maturation during exocytosis as a target of the diacylglycerol second messenger pathway. Is involved in neurotransmitter release by acting in synaptic vesicle priming prior to vesicle fusion and participates in the activity-depending refilling of readily releasable vesicle pool (RRP) (By similarity). Essential for synaptic vesicle maturation in a subset of excitatory/glutamatergic but not inhibitory/GABA-mediated synapses. Mus musculus (taxid: 10090) |
| >sp|P27715|UNC13_CAEEL Phorbol ester/diacylglycerol-binding protein unc-13 OS=Caenorhabditis elegans GN=unc-13 PE=1 SV=4 | Back alignment and function description |
|---|
Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/145 (31%), Positives = 72/145 (49%), Gaps = 25/145 (17%)
Query: 3 STRLYVYVLQGQDLLAKDS------YVKVQIGKHKSKSRILKNNSNPVWNEEFVFRVHNI 56
S ++ + VL Q L+AKD YV Q+GK K ++R + NPVWNE+F F HN
Sbjct: 1156 SAKITLTVLCAQGLIAKDKTGKSDPYVTAQVGKTKRRTRTIHQELNPVWNEKFHFECHNS 1215
Query: 57 DDEELVVSVFQHNDD------SGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETP 110
D + V V+ ++D L S + +G+ + V +++ E + W++LE
Sbjct: 1216 TD-RIKVRVWDEDNDLKSKLRQKLTRESDDFLGQTVIEVRTLSGEMD-----VWYNLE-- 1267
Query: 111 KTRKFTNKDC--GKILLTISLNGKG 133
K T+K G I L I++ KG
Sbjct: 1268 ---KRTDKSAVSGAIRLHINVEIKG 1289
|
May form part of a signal transduction pathway, transducing the signal from diacylglycerol to effector functions. One such function could be the release of neurotransmitter from neurons. Caenorhabditis elegans (taxid: 6239) |
| >sp|Q62769|UN13B_RAT Protein unc-13 homolog B OS=Rattus norvegicus GN=Unc13b PE=1 SV=2 | Back alignment and function description |
|---|
Score = 60.5 bits (145), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 46/145 (31%), Positives = 72/145 (49%), Gaps = 25/145 (17%)
Query: 3 STRLYVYVLQGQDLLAKDS------YVKVQIGKHKSKSRILKNNSNPVWNEEFVFRVHNI 56
S ++ + V+ Q L AKD YV VQ+GK K +++ + N NPVW E+F F HN
Sbjct: 612 SAKITITVVCAQGLQAKDKTGSSDPYVTVQVGKTKKRTKTIFGNLNPVWEEKFHFECHNS 671
Query: 57 DDEELVVSVFQHNDD------SGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETP 110
D + V V+ +DD L S + +G+ + V +++ E + W++LE
Sbjct: 672 SD-RIKVRVWDEDDDIKSRVKQRLKRESDDFLGQTIIEVRTLSGEMD-----VWYNLE-- 723
Query: 111 KTRKFTNKDC--GKILLTISLNGKG 133
K T+K G I L I++ KG
Sbjct: 724 ---KRTDKSAVSGAIRLQINVEIKG 745
|
Plays a role in vesicle maturation during exocytosis as a target of the diacylglycerol second messenger pathway. Is involved in neurotransmitter release by acting in synaptic vesicle priming prior to vesicle fusion and participates in the activity-depending refilling of readily releasable vesicle pool (RRP), Essential for synaptic vesicle maturation in a subset of excitatory/glutamatergic but not inhibitory/GABA-mediated synapses. Rattus norvegicus (taxid: 10116) |
| >sp|O14795|UN13B_HUMAN Protein unc-13 homolog B OS=Homo sapiens GN=UNC13B PE=1 SV=2 | Back alignment and function description |
|---|
Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/145 (31%), Positives = 71/145 (48%), Gaps = 25/145 (17%)
Query: 3 STRLYVYVLQGQDLLAKDS------YVKVQIGKHKSKSRILKNNSNPVWNEEFVFRVHNI 56
S ++ + V+ Q L AKD YV VQ+ K K +++ + N NPVW E+F F HN
Sbjct: 599 SAKITITVVCAQGLQAKDKTGSSDPYVTVQVSKTKKRTKTIFGNLNPVWEEKFHFECHNS 658
Query: 57 DDEELVVSVFQHNDD------SGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETP 110
D + V V+ +DD L S + +G+ + V +++ E + W++LE
Sbjct: 659 SD-RIKVRVWDEDDDIKSRVKQRLKRESDDFLGQTIIEVRTLSGEMD-----VWYNLE-- 710
Query: 111 KTRKFTNKDC--GKILLTISLNGKG 133
K T+K G I L IS+ KG
Sbjct: 711 ---KRTDKSAVSGAIRLQISVEIKG 732
|
Plays a role in vesicle maturation during exocytosis as a target of the diacylglycerol second messenger pathway. Is involved in neurotransmitter release by acting in synaptic vesicle priming prior to vesicle fusion and participates in the activity-depending refilling of readily releasable vesicle pool (RRP). Essential for synaptic vesicle maturation in a subset of excitatory/glutamatergic but not inhibitory/GABA-mediated synapses. Homo sapiens (taxid: 9606) |
| >sp|Q62768|UN13A_RAT Protein unc-13 homolog A OS=Rattus norvegicus GN=Unc13a PE=1 SV=1 | Back alignment and function description |
|---|
Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 69/145 (47%), Gaps = 25/145 (17%)
Query: 3 STRLYVYVLQGQDLLAKDS------YVKVQIGKHKSKSRILKNNSNPVWNEEFVFRVHNI 56
S ++ + V+ Q L AKD YV VQ+GK K +++ + N NPVW E F F HN
Sbjct: 688 SAKISITVVCAQGLQAKDKTGSSDPYVTVQVGKTKKRTKTIYGNLNPVWEENFHFECHNS 747
Query: 57 DDEELVVSVFQHNDD------SGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETP 110
D + V V +DD S + +G+ + V +++ E + W++L+
Sbjct: 748 SD-RIKVRVLDEDDDIKSRVKQRFKRESDDFLGQTIIEVRTLSGEMD-----VWYNLD-- 799
Query: 111 KTRKFTNKDC--GKILLTISLNGKG 133
K T+K G I L IS+ KG
Sbjct: 800 ---KRTDKSAVSGAIRLHISVEIKG 821
|
Plays a role in vesicle maturation during exocytosis as a target of the diacylglycerol second messenger pathway. Involved in neurotransmitter release by acting in synaptic vesicle priming prior to vesicle fusion and participates in the activity-dependent refilling of readily releasable vesicle pool (RRP). Essential for synaptic vesicle maturation in most excitatory/glutamatergic but not inhibitory/GABA-mediated synapses. Also involved in secretory granule priming in insulin secretion. Rattus norvegicus (taxid: 10116) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 985 | ||||||
| 359491211 | 1021 | PREDICTED: C2 and GRAM domain-containing | 0.992 | 0.957 | 0.687 | 0.0 | |
| 297733711 | 1060 | unnamed protein product [Vitis vinifera] | 0.990 | 0.920 | 0.687 | 0.0 | |
| 255540521 | 1022 | conserved hypothetical protein [Ricinus | 0.991 | 0.955 | 0.671 | 0.0 | |
| 224133662 | 1039 | predicted protein [Populus trichocarpa] | 0.987 | 0.936 | 0.648 | 0.0 | |
| 356507290 | 1014 | PREDICTED: C2 and GRAM domain-containing | 0.981 | 0.953 | 0.626 | 0.0 | |
| 356518944 | 1017 | PREDICTED: C2 and GRAM domain-containing | 0.981 | 0.950 | 0.621 | 0.0 | |
| 357461815 | 1014 | GRAM domain-containing protein 1B [Medic | 0.981 | 0.953 | 0.592 | 0.0 | |
| 15240629 | 1027 | C2 and GRAM domain-containing protein [A | 0.980 | 0.940 | 0.553 | 0.0 | |
| 297792313 | 1028 | C2 domain-containing protein [Arabidopsi | 0.980 | 0.939 | 0.553 | 0.0 | |
| 224124726 | 1020 | predicted protein [Populus trichocarpa] | 0.978 | 0.945 | 0.488 | 0.0 |
| >gi|359491211|ref|XP_002277671.2| PREDICTED: C2 and GRAM domain-containing protein At5g50170-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1436 bits (3718), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 702/1021 (68%), Positives = 829/1021 (81%), Gaps = 43/1021 (4%)
Query: 5 RLYVYVLQGQDLLAKDSYVKVQIGKHKSKSRILKNNSNPVWNEEFVFRVHNIDDEELVVS 64
RLY YVL+G+DL +DSYVK+Q+GK KSK+R+L+ + NPVWNEEF FRVH++ E L++S
Sbjct: 2 RLYAYVLEGRDLCVEDSYVKLQLGKFKSKTRVLRRSRNPVWNEEFAFRVHDVGGE-LILS 60
Query: 65 VFQHNDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTNKDCGKIL 124
V H+DDSG F SS EL+GRVR+PVS++ A++N LPPTWFSLE ++ KF +K+ GKIL
Sbjct: 61 VLHHDDDSGFFNSSNELVGRVRIPVSAVLAKENQTLPPTWFSLERGRSGKFISKEYGKIL 120
Query: 125 LTISLNGKGHNLSSNRLLYLHSNVSSNESKELEDPCVLSHDVSCSKAPCLDVTEGNHLMK 184
LTISL+G+ + +++ LY HS V + + KE E V S D+ S V EG LMK
Sbjct: 121 LTISLHGRSQDTTADHPLYAHSRVKTRDFKEWEG-LVESEDIVSSNTSTWKVPEGKQLMK 179
Query: 185 AMVSHLEKIFNKNDQGLKTEDSSELSSTPSDYEDCVEEHPPSH-NFEEAIKMMQSRENEG 243
A+ S LEK+ KN++ K +DSSE+SS PSDYEDC+EE PS +FEEAI++MQSR E
Sbjct: 180 AIASRLEKLLGKNEETSKMDDSSEVSSIPSDYEDCIEEQRPSCCSFEEAIELMQSRNGEQ 239
Query: 244 DMPENLQGGILLDQLYQVSPCDLNTFLFAPDSQFRKDLAELQGTKDVQEGPWEWKSGEMT 303
+MPENLQGGILLDQ Y V+ LN LFAP+SQFR+DLAELQ T +++EGPW WKSG ++
Sbjct: 240 EMPENLQGGILLDQTYIVASKVLNMLLFAPNSQFRQDLAELQRTTNMKEGPWTWKSGALS 299
Query: 304 CLTRAVSYMKAATKLVKAVKATEQQTYLKANGQEFAILVTVSTPDVPYGNTFNVQLLYKI 363
CLTR VSY +AATKLVKAV A E+QTY+KA+G+EFA+LV V TPDVPYGN+F V+LLYKI
Sbjct: 300 CLTRVVSYTQAATKLVKAVDALEEQTYIKADGREFAVLVNVDTPDVPYGNSFKVELLYKI 359
Query: 364 IPGPELSSGEDSSHLIISWGIDFHQSTMMRGMIEGGARQGLKESFEQFANLLAQNLKILD 423
+PGPELSSGE+SSHL++SWG+ F Q+T+MRGMIEGGARQGLKESF+QFANLLAQN K L
Sbjct: 360 MPGPELSSGEESSHLVVSWGLSFSQNTIMRGMIEGGARQGLKESFDQFANLLAQNFKTLG 419
Query: 424 SKDASDKDHMLATLQTEQQSDWELASEYFWNFTVVSAGFMILYVVVHILLCEPSKRQGLE 483
S D+ DKD MLATLQTEQQSDWELA+EYF NFTVVSA FM++Y++VHILL S++QGLE
Sbjct: 420 SIDSLDKDQMLATLQTEQQSDWELATEYFGNFTVVSAFFMVIYILVHILLSVRSEQQGLE 479
Query: 484 FYGLDLPDSFGELISCGILVIQLEQVFNMVGHFVRARLRKGSDHGVKAQGDGWVLTVALV 543
F GLDLPDSFGELI+CGILVIQLE+V+ M+ HFV+AR ++GSDHGVKAQGDGWVLTVAL+
Sbjct: 480 FSGLDLPDSFGELITCGILVIQLERVYAMILHFVQARFQRGSDHGVKAQGDGWVLTVALI 539
Query: 544 EGVNLASSEMTGLSDPYVVFTCNGKTRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEV 603
EG+NLAS + TGLSDPYVVFTCNGKTRTSSV+LQT DPQW++ILEFDAMEEPP+VLDVEV
Sbjct: 540 EGINLASLDSTGLSDPYVVFTCNGKTRTSSVKLQTHDPQWNEILEFDAMEEPPAVLDVEV 599
Query: 604 FDFDGPFDQATSLGHAEINFLKHTSTELADMWVSLEGKLAQSAQSKVHLRIFLENNNGVE 663
FDFDGPFD+A SLGHAEINFL+HTSTELADMWVSLEGKLAQS+QSK+HLRIFL+NNNGVE
Sbjct: 600 FDFDGPFDEAASLGHAEINFLRHTSTELADMWVSLEGKLAQSSQSKLHLRIFLDNNNGVE 659
Query: 664 TIKEYLTKMEKEVGKK---------------------------------------GRLFL 684
TIKEYL KMEKEVGKK GRLFL
Sbjct: 660 TIKEYLAKMEKEVGKKITLQSPHRNSTFLALFGLPPEEFLINDFTCYLKRKVPLQGRLFL 719
Query: 685 SARIVGFYANLFGNKTKFFFLWEDIEDIQILSPSLATVGSPSLVIILWKGRGLDARHGAK 744
SARIVGFYANLFG+KTKFFFLWEDIEDIQ+ PSLA++GSPSLVIIL KGRGLDARHGAK
Sbjct: 720 SARIVGFYANLFGHKTKFFFLWEDIEDIQVHPPSLASLGSPSLVIILRKGRGLDARHGAK 779
Query: 745 SQDEEGRLRFYFQSFVSFNDASRTIMALWRSRTLTAYQKEQIAEEQQVQEEMS-TAADRG 803
SQDEEGRL+FYFQSFVSFN ASRTIMALWR+RTLT QK QIA+EQQ ++ S D G
Sbjct: 780 SQDEEGRLKFYFQSFVSFNVASRTIMALWRTRTLTPEQKAQIADEQQDEDGSSLLLEDPG 839
Query: 804 SVPNFEDAKMSKVYNAELPISVKALMEMFDGGKLEHQVMEKSGCHNYVTTPWDLVKPGVC 863
SV N E+AKMSKVY+AELPI +K+LMEMFDGG LEH++MEKSG NY T W+ VKP +
Sbjct: 840 SVFNVEEAKMSKVYSAELPIDIKSLMEMFDGGNLEHKIMEKSGYLNYKATGWETVKPDLY 899
Query: 864 ERHLSYRFNRHVSIFGGEVTCTQQKSPLASGEGWIVNEVMSLHDVPFDDHFRVHFRYEIE 923
ERHL ++FNRHVSIFGGEVTCTQ+KSP+ + GWI+NEVM+LHD+PF DHFRVHFRY+IE
Sbjct: 900 ERHLCFKFNRHVSIFGGEVTCTQKKSPIGNDNGWILNEVMALHDIPFGDHFRVHFRYQIE 959
Query: 924 KSPLAHNACKCAIYIGISWLKSTKFQQRITQNITEKFTHRLKEMIELVEREILFATQQDA 983
LA CKC +++ I WLKST FQQRIT+NITEKFT RLKE+IELVERE L QD+
Sbjct: 960 NFGLAPGKCKCEVHMEILWLKSTVFQQRITRNITEKFTSRLKEIIELVEREALLNCPQDS 1019
Query: 984 S 984
S
Sbjct: 1020 S 1020
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297733711|emb|CBI14958.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1429 bits (3699), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 701/1020 (68%), Positives = 827/1020 (81%), Gaps = 44/1020 (4%)
Query: 5 RLYVYVLQGQDLLAKDSYVKVQIGKHKSKSRILKNNSNPVWNEEFVFRVHNIDDEELVVS 64
RLY YVL+G+DL +DSYVK+Q+GK KSK+R+L+ + NPVWNEEF FRVH++ E L++S
Sbjct: 2 RLYAYVLEGRDLCVEDSYVKLQLGKFKSKTRVLRRSRNPVWNEEFAFRVHDVGGE-LILS 60
Query: 65 VFQHNDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTNKD-CGKI 123
V H+DDSG F SS EL+GRVR+PVS++ A++N LPPTWFSLE ++ KF +K+ GKI
Sbjct: 61 VLHHDDDSGFFNSSNELVGRVRIPVSAVLAKENQTLPPTWFSLERGRSGKFISKEYAGKI 120
Query: 124 LLTISLNGKGHNLSSNRLLYLHSNVSSNESKELEDPCVLSHDVSCSKAPCLDVTEGNHLM 183
LLTISL+G+ + +++ LY HS V + + KE E V S D+ S V EG LM
Sbjct: 121 LLTISLHGRSQDTTADHPLYAHSRVKTRDFKEWEG-LVESEDIVSSNTSTWKVPEGKQLM 179
Query: 184 KAMVSHLEKIFNKNDQGLKTEDSSELSSTPSDYEDCVEEHPPSH-NFEEAIKMMQSRENE 242
KA+ S LEK+ KN++ K +DSSE+SS PSDYEDC+EE PS +FEEAI++MQSR E
Sbjct: 180 KAIASRLEKLLGKNEETSKMDDSSEVSSIPSDYEDCIEEQRPSCCSFEEAIELMQSRNGE 239
Query: 243 GDMPENLQGGILLDQLYQVSPCDLNTFLFAPDSQFRKDLAELQGTKDVQEGPWEWKSGEM 302
+MPENLQGGILLDQ Y V+ LN LFAP+SQFR+DLAELQ T +++EGPW WKSG +
Sbjct: 240 QEMPENLQGGILLDQTYIVASKVLNMLLFAPNSQFRQDLAELQRTTNMKEGPWTWKSGAL 299
Query: 303 TCLTRAVSYMKAATKLVKAVKATEQQTYLKANGQEFAILVTVSTPDVPYGNTFNVQLLYK 362
+CLTR VSY +AATKLVKAV A E+QTY+KA+G+EFA+LV V TPDVPYGN+F V+LLYK
Sbjct: 300 SCLTRVVSYTQAATKLVKAVDALEEQTYIKADGREFAVLVNVDTPDVPYGNSFKVELLYK 359
Query: 363 IIPGPELSSGEDSSHLIISWGIDFHQSTMMRGMIEGGARQGLKESFEQFANLLAQNLKIL 422
I+PGPELSSGE+SSHL++SWG+ F Q+T+MRGMIEGGARQGLKESF+QFANLLAQN K L
Sbjct: 360 IMPGPELSSGEESSHLVVSWGLSFSQNTIMRGMIEGGARQGLKESFDQFANLLAQNFKTL 419
Query: 423 DSKDASDKDHMLATLQTEQQSDWELASEYFWNFTVVSAGFMILYVVVHILLCEPSKRQGL 482
S D+ DKD MLATLQTEQQSDWELA+EYF NFTVVSA FM++Y++VHILL S++QGL
Sbjct: 420 GSIDSLDKDQMLATLQTEQQSDWELATEYFGNFTVVSAFFMVIYILVHILLSVRSEQQGL 479
Query: 483 EFYGLDLPDSFGELISCGILVIQLEQVFNMVGHFVRARLRKGSDHGVKAQGDGWVLTVAL 542
EF GLDLPDSFGELI+CGILVIQLE+V+ M+ HFV+AR ++GSDHGVKAQGDGWVLTVAL
Sbjct: 480 EFSGLDLPDSFGELITCGILVIQLERVYAMILHFVQARFQRGSDHGVKAQGDGWVLTVAL 539
Query: 543 VEGVNLASSEMTGLSDPYVVFTCNGKTRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVE 602
+EG+NLAS + TGLSDPYVVFTCNGKTRTSSV+LQT DPQW++ILEFDAMEEPP+VLDVE
Sbjct: 540 IEGINLASLDSTGLSDPYVVFTCNGKTRTSSVKLQTHDPQWNEILEFDAMEEPPAVLDVE 599
Query: 603 VFDFDGPFDQATSLGHAEINFLKHTSTELADMWVSLEGKLAQSAQSKVHLRIFLENNNGV 662
VFDFDGPFD+A SLGHAEINFL+HTSTELADMWVSLEGKLAQS+QSK+HLRIFL+NNNGV
Sbjct: 600 VFDFDGPFDEAASLGHAEINFLRHTSTELADMWVSLEGKLAQSSQSKLHLRIFLDNNNGV 659
Query: 663 ETIKEYLTKMEKEVGKK---------------------------------------GRLF 683
ETIKEYL KMEKEVGKK GRLF
Sbjct: 660 ETIKEYLAKMEKEVGKKITLQSPHRNSTFLALFGLPPEEFLINDFTCYLKRKVPLQGRLF 719
Query: 684 LSARIVGFYANLFGNKTKFFFLWEDIEDIQILSPSLATVGSPSLVIILWKGRGLDARHGA 743
LSARIVGFYANLFG+KTKFFFLWEDIEDIQ+ PSLA++GSPSLVIIL KGRGLDARHGA
Sbjct: 720 LSARIVGFYANLFGHKTKFFFLWEDIEDIQVHPPSLASLGSPSLVIILRKGRGLDARHGA 779
Query: 744 KSQDEEGRLRFYFQSFVSFNDASRTIMALWRSRTLTAYQKEQIAEEQQVQEEMS-TAADR 802
KSQDEEGRL+FYFQSFVSFN ASRTIMALWR+RTLT QK QIA+EQQ ++ S D
Sbjct: 780 KSQDEEGRLKFYFQSFVSFNVASRTIMALWRTRTLTPEQKAQIADEQQDEDGSSLLLEDP 839
Query: 803 GSVPNFEDAKMSKVYNAELPISVKALMEMFDGGKLEHQVMEKSGCHNYVTTPWDLVKPGV 862
GSV N E+AKMSKVY+AELPI +K+LMEMFDGG LEH++MEKSG NY T W+ VKP +
Sbjct: 840 GSVFNVEEAKMSKVYSAELPIDIKSLMEMFDGGNLEHKIMEKSGYLNYKATGWETVKPDL 899
Query: 863 CERHLSYRFNRHVSIFGGEVTCTQQKSPLASGEGWIVNEVMSLHDVPFDDHFRVHFRYEI 922
ERHL ++FNRHVSIFGGEVTCTQ+KSP+ + GWI+NEVM+LHD+PF DHFRVHFRY+I
Sbjct: 900 YERHLCFKFNRHVSIFGGEVTCTQKKSPIGNDNGWILNEVMALHDIPFGDHFRVHFRYQI 959
Query: 923 EKSPLAHNACKCAIYIGISWLKSTKFQQRITQNITEKFTHRLKEMIELVEREILFATQQD 982
E LA CKC +++ I WLKST FQQRIT+NITEKFT RLKE+IELVERE L QD
Sbjct: 960 ENFGLAPGKCKCEVHMEILWLKSTVFQQRITRNITEKFTSRLKEIIELVEREALLNCPQD 1019
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255540521|ref|XP_002511325.1| conserved hypothetical protein [Ricinus communis] gi|223550440|gb|EEF51927.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1410 bits (3649), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 688/1025 (67%), Positives = 828/1025 (80%), Gaps = 48/1025 (4%)
Query: 5 RLYVYVLQGQDLLAKDSYVKVQIGKHKSKSRILKNNSNPVWNEEFVFRVHNIDDEELVVS 64
RLYVYVLQ ++L KDS+V +QIGKH SK+R+LK+++NPVWNEEFVFRVH+ D +LVVS
Sbjct: 2 RLYVYVLQAKELPVKDSFVTLQIGKHNSKTRVLKDSANPVWNEEFVFRVHDTD-VDLVVS 60
Query: 65 VFQHNDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTNKDCGKIL 124
VF +N D SG+L+GRVR+PV SI+AE+NH LPPTWFSLE P T KF N D GKIL
Sbjct: 61 VFNYNHDHR---GSGDLLGRVRIPVCSISAENNHSLPPTWFSLEKPLTGKFINMDNGKIL 117
Query: 125 LTISLNGKGHNLSSNRLLYLHSNVSSNESKELEDPCVLSHDVSCSKAPCLDVTEGNHLMK 184
LT+SL+GKGH+ ++N + ++N + KE E P V S + CSKAP L +T+G LMK
Sbjct: 118 LTLSLHGKGHDFATNHFINANANPTDEGHKEYEGPYVSSGGMCCSKAPLLKLTDGKKLMK 177
Query: 185 AMVSHLEKIFNKNDQGLKTEDSSELSSTPSDYEDCVEEHPPSHNFEEAIKMMQSRENEGD 244
+ S LE++FNKN++ L+ + SSE +S SDYEDC EE P S +FEEA+++M S NE +
Sbjct: 178 TIASRLERVFNKNEEALRVDSSSESASASSDYEDCPEEPPSSCSFEEAMEIMNSNGNEEE 237
Query: 245 ---MPENLQGGILLDQLYQVSPCDLNTFLFAPDSQFRKDLAELQGTKDVQEGPWEWKSGE 301
MPENL GGILLDQ+Y V CDLN FLFAPDSQFRKD+AE+QGT DV+EGPW WKS
Sbjct: 238 EEEMPENLHGGILLDQIYAVPSCDLNKFLFAPDSQFRKDIAEMQGTTDVEEGPWTWKSVN 297
Query: 302 MTCLTRAVSYMKAATKLVKAVKATEQQTYLKANGQEFAILVTVSTPDVPYGNTFNVQLLY 361
M+ LTR V+Y KAATKLVKAVKATE+QTY++A+G++FA+ V VSTPDVPYG TF+++LLY
Sbjct: 298 MSHLTRIVTYTKAATKLVKAVKATEEQTYIRADGRQFAVFVNVSTPDVPYGRTFHIELLY 357
Query: 362 KIIPGPELSSGEDSSHLIISWGIDFHQSTMMRGMIEGGARQGLKESFEQFANLLAQNLKI 421
KI+PGP++ SGE+SS LIISWGI+FHQ+TM++GMIEGGARQGLKESF+QFANLLA+N KI
Sbjct: 358 KIVPGPQVPSGEESSRLIISWGINFHQNTMLKGMIEGGARQGLKESFDQFANLLAKNFKI 417
Query: 422 LDSKDASDKDHMLATLQTEQQSDWELASEYFWNFTVVSAGFMILYVVVHILLCEPSKRQG 481
LDS D S KDH+L TL+ E +SDWE+ASEYF NFTVVS FM YVV+HILLCEPSK QG
Sbjct: 418 LDSTDLSKKDHVLTTLEAEHESDWEMASEYFLNFTVVSTVFMTFYVVLHILLCEPSKVQG 477
Query: 482 LEFYGLDLPDSFGELISCGILVIQLEQVFNMVGHFVRARLRKGSDHGVKAQGDGWVLTVA 541
LE GLDLPDSFG+L +C ILV QLE+V+NMV HF++ARL++GSDHG+KA G+GWVLTVA
Sbjct: 478 LEINGLDLPDSFGQLFTCAILVTQLERVYNMVSHFIQARLQRGSDHGIKAHGNGWVLTVA 537
Query: 542 LVEGVNLASSEMTGLSDPYVVFTCNGKTRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDV 601
L+EG+NLAS + TGLSDPYVVFTCNGKTRTSSV+LQ+ +PQW+DILEFDAMEEPPSVLDV
Sbjct: 538 LIEGINLASLDSTGLSDPYVVFTCNGKTRTSSVKLQSSNPQWNDILEFDAMEEPPSVLDV 597
Query: 602 EVFDFDGPFDQATSLGHAEINFLKHTSTELADMWVSLEGKLAQSAQSKVHLRIFLENNNG 661
EVFDFDGPFDQATSLGH EINFLKHTSTELADMW+SLEGKLAQS+QSK+HLRI+L+N+ G
Sbjct: 598 EVFDFDGPFDQATSLGHTEINFLKHTSTELADMWISLEGKLAQSSQSKLHLRIYLDNSKG 657
Query: 662 VETIKEYLTKMEKEVGKK---------------------------------------GRL 682
VETIKEY+TK+EKEVG K GRL
Sbjct: 658 VETIKEYITKVEKEVGTKLNLRSPHRNSTFQKLFGLPPEEFLISDFTCYLKRKMPLQGRL 717
Query: 683 FLSARIVGFYANLFGNKTKFFFLWEDIEDIQILSPSLATVGSPSLVIILWKGRGLDARHG 742
FLS+RIVGFYANLFG+KTKFFFLWEDIEDI +L PSL++VG P+LVI+L KGRGLDARHG
Sbjct: 718 FLSSRIVGFYANLFGHKTKFFFLWEDIEDIHVLPPSLSSVGIPTLVIVLRKGRGLDARHG 777
Query: 743 AKSQDEEGRLRFYFQSFVSFNDASRTIMALWRSRTLTAYQKEQIAEEQQVQEEMSTAA-- 800
AK+ DEEGRLR++FQSFVSFN ASRTIMALWR+R LT QK IAEEQQ +E S
Sbjct: 778 AKTLDEEGRLRYHFQSFVSFNTASRTIMALWRTRMLTPEQKALIAEEQQQDQEESPVMLE 837
Query: 801 DRGSVPNFEDAKMSKVYNAELPISVKALMEMFDGGKLEHQVMEKSGCHNYVTTPWDLVKP 860
D G + E+AKMS+VY+AELPIS+K+LME+F GGK+EH++MEKSGC NY TT W+ VK
Sbjct: 838 DSGPLLVAEEAKMSRVYSAELPISIKSLMEIFGGGKMEHKIMEKSGCLNYATTAWESVKS 897
Query: 861 GVCERHLSYRFNRHVSIFGGEVTCTQQKSPLASGEGWIVNEVMSLHDVPFDDHFRVHFRY 920
GV ERH+SY+FNRHVSIFGGEV+CTQQKSP+ + GWIVNEVM L VPF DHFRV+ RY
Sbjct: 898 GVFERHVSYKFNRHVSIFGGEVSCTQQKSPIENDGGWIVNEVMVLQSVPFGDHFRVNVRY 957
Query: 921 EIEKSPLAHNACKCAIYIGISWLKSTKFQQRITQNITEKFTHRLKEMIELVEREILFATQ 980
IE+S LAH+AC+C +Y+G +WLKSTKFQQRIT+NITEKFTHR+ E+ EL+ERE+LF Q
Sbjct: 958 RIEQSSLAHSACRCDVYVGTTWLKSTKFQQRITRNITEKFTHRMNEIFELLEREVLFTIQ 1017
Query: 981 QDASV 985
+ +
Sbjct: 1018 HGSII 1022
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224133662|ref|XP_002321630.1| predicted protein [Populus trichocarpa] gi|222868626|gb|EEF05757.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1365 bits (3533), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 666/1027 (64%), Positives = 810/1027 (78%), Gaps = 54/1027 (5%)
Query: 5 RLYVYVLQGQDLLAKDSYVKVQIGKHKSKSRILKNNSNPVWNEEFVFRVH-NIDDEELVV 63
RLYVYVLQG+ L KD+Y +Q+GKHKSK+R+ +NNSNPV NEEFVFRV+ N D +ELVV
Sbjct: 2 RLYVYVLQGKGLAVKDTYFILQVGKHKSKTRVFRNNSNPVMNEEFVFRVNGNNDQQELVV 61
Query: 64 SVFQHNDD-----SGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTNK 118
SVF H+DD F SG+L+GRV++PV S+AAE N LPPTWFSLE P T KF N
Sbjct: 62 SVFNHDDDDDDDFGSFFNGSGDLVGRVQIPVWSVAAEQNQTLPPTWFSLEKPMTDKFINM 121
Query: 119 DCGKILLTISLNGKGHNLSSNRLLYLHSNVSSNESKELEDPCVLSHDVSCSKAPCLDVTE 178
DCGKILL++SL+ K S+N +Y +SNV+ + KE E PC+ SH + KAP + + E
Sbjct: 122 DCGKILLSLSLSRKCDKSSTNHFVYANSNVN-EDYKESEGPCISSHGMHGCKAPRVKIAE 180
Query: 179 GNHLMKAMVSHLEKIFNKNDQGLKTEDSSELSSTPSDYEDCVEEHPPSHNFEEAIKMMQS 238
G LMK +VS LE++FNK+++ +T+DSSEL+S SD EDC +H S +F E +++M S
Sbjct: 181 GKKLMKTIVSRLERVFNKHEENSRTDDSSELTSASSDCEDC--DHSSSCSFVEGLEIMSS 238
Query: 239 RENEGDMPENLQGGILLDQLYQVSPCDLNTFLFAPDSQFRKDLAELQGTKDVQEGPWEWK 298
R+NE +MPENLQGGILLD++Y V DLN FLFAP+S F KDL ELQGT D +EGPW+ K
Sbjct: 239 RDNEQEMPENLQGGILLDKIYVVPSWDLNMFLFAPNSLFMKDLEELQGTTDAEEGPWKRK 298
Query: 299 SGEMTCLTRAVSYMKAATKLVKAVKATEQQTYLKANGQEFAILVTVSTPDVPYGNTFNVQ 358
S M+ LTR VSY KAATKLVK+VKATE+QTY+KA+G+EFA+L VSTP+VPYGNTFN++
Sbjct: 299 SANMSHLTRTVSYTKAATKLVKSVKATEEQTYIKADGKEFAVLTNVSTPEVPYGNTFNIE 358
Query: 359 LLYKIIPGPELSSGEDSSHLIISWGIDFHQSTMMRGMIEGGARQGLKESFEQFANLLAQN 418
LLYKI+PGPE+SSGE SSHL+ISWGI+F +STMM+GMIEGGARQGLKESF+QFANLLAQN
Sbjct: 359 LLYKILPGPEISSGEASSHLLISWGINFCKSTMMKGMIEGGARQGLKESFDQFANLLAQN 418
Query: 419 LKILDSKDASDKDHMLATLQTEQQSDWELASEYFWNFTVVSAGFMILYVVVHILLCEPSK 478
K +DS D+S+KDHMLA L+ QS+W+LAS++FWNFT VS FMILYVVVHI CEPS
Sbjct: 419 FKTMDSMDSSNKDHMLAKLEAAHQSEWQLASDFFWNFTAVSTIFMILYVVVHIFFCEPSI 478
Query: 479 RQGLEFYGLDLPDSFGELISCGILVIQLEQVFNMVGHFVRARLRKGSDHGVKAQGDGWVL 538
QGLEF GLDLPDSFG+LI+C ILVIQLE+V NM+ HF++ARL++GSDHGV+AQG+GWVL
Sbjct: 479 VQGLEFNGLDLPDSFGQLITCAILVIQLERVCNMMKHFIQARLQRGSDHGVRAQGEGWVL 538
Query: 539 TVALVEGVNLASSEMTGLSDPYVVFTCNGKTRTSSVQLQTCDPQWHDILEFDAMEEPPSV 598
TVAL+EG NL S + TGLSDPYVV TCNGKTRTSS+QL T DPQW++ILEFDAM+EPPSV
Sbjct: 539 TVALIEGTNLPSLDSTGLSDPYVVLTCNGKTRTSSIQLHTSDPQWNEILEFDAMDEPPSV 598
Query: 599 LDVEVFDFDGPFDQATSLGHAEINFLKHTSTELADMWVSLEGKLAQSAQSKVHLRIFLEN 658
LDVEVFDFDGPFDQATSLGHAEI FLKHTSTELADMW+ LEGKL+QS+QSK+HLRIF++N
Sbjct: 599 LDVEVFDFDGPFDQATSLGHAEIMFLKHTSTELADMWIPLEGKLSQSSQSKLHLRIFIDN 658
Query: 659 NNGVETIKEYLTKMEKEVGKK--------------------------------------- 679
+ GVET+KEYLTKMEKEVGKK
Sbjct: 659 DKGVETVKEYLTKMEKEVGKKLNLPSPHRNSTFQKLFELPPEEFLINDFTCQLKRKMPLQ 718
Query: 680 ----GRLFLSARIVGFYANLFGNKTKFFFLWEDIEDIQILSPSLATVGSPSLVIILWKGR 735
GRLFLSARI+GFY+NLFG+KTKFFFLWEDIEDIQ+ PSL++VGSP LVIIL +GR
Sbjct: 719 VRVTGRLFLSARILGFYSNLFGHKTKFFFLWEDIEDIQVHPPSLSSVGSPFLVIILRRGR 778
Query: 736 GLDARHGAKSQDEEGRLRFYFQSFVSFNDASRTIMALWRSRTLTAYQKEQIAEEQQVQEE 795
GL AR AKSQDEEGRLR++FQSF+SFN ASRTIMALW+++T+ K Q+AEEQ EE
Sbjct: 779 GLHARRWAKSQDEEGRLRYHFQSFISFNIASRTIMALWKTKTMIPEHKTQLAEEQPQDEE 838
Query: 796 MSTAA--DRGSVPNFEDAKMSKVYNAELPISVKALMEMFDGGKLEHQVMEKSGCHNYVTT 853
+ D G + E+ KM K+++AELP SV++LMEMFDGGK+EH++MEKSG +Y TT
Sbjct: 839 KRSIMLEDYGCSVSPEEVKMPKIFSAELPFSVESLMEMFDGGKMEHEIMEKSGRLSYATT 898
Query: 854 PWDLVKPGVCERHLSYRFNRHVSIFGGEVTCTQQKSPLASGEGWIVNEVMSLHDVPFDDH 913
W+ VKPGV ER ++YRF H+SIFGGEVTCTQ KSPL + +GW VNE+ +HDVPF D+
Sbjct: 899 AWESVKPGVFERQITYRFKHHISIFGGEVTCTQHKSPLENDKGWTVNELTVMHDVPFADY 958
Query: 914 FRVHFRYEIEKSPLAHNACKCAIYIGISWLKSTKFQQRITQNITEKFTHRLKEMIELVER 973
F V+ RY+IEKS LAH ACKC +Y+GI+WLKSTKFQQRIT+NIT+KFT +KE+ EL++R
Sbjct: 959 FHVNLRYQIEKSSLAHCACKCGVYVGITWLKSTKFQQRITRNITDKFTQIMKEVFELIKR 1018
Query: 974 EILFATQ 980
E LFA
Sbjct: 1019 EKLFANH 1025
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356507290|ref|XP_003522401.1| PREDICTED: C2 and GRAM domain-containing protein At5g50170-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1291 bits (3341), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 637/1017 (62%), Positives = 783/1017 (76%), Gaps = 50/1017 (4%)
Query: 5 RLYVYVLQGQDLLAKDSYVKVQIGKHKSKSRILKNNSNPVWNEEFVFRVHNIDDEELVVS 64
RLYV VL+ +DL KD+YVK+++GK K ++RIL+N SNPVWN+EF F VH +D LVVS
Sbjct: 3 RLYVCVLEAKDLPVKDTYVKLRLGKFKCRTRILRNTSNPVWNKEFGFNVHGAEDM-LVVS 61
Query: 65 VFQHND--DSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTNKDCGK 122
V H++ + + S E +G VR+PV S+A ED PTWFSLE+PK+ KF N+ CGK
Sbjct: 62 VVNHDNINECRVTNGSVEFVGEVRIPVGSVAFEDKQTFLPTWFSLESPKSGKFFNEYCGK 121
Query: 123 ILLTISLNGKGHNLSSNRLLYLHSNVSSNESKELEDPCVLSHDVSCSKAPCLDVTEGNHL 182
ILLT+SL+GKG + N +S ++ + S++LE V+C + PC + G L
Sbjct: 122 ILLTVSLHGKGRSSFINHKHSSNSTIAVDNSRDLE-----GLHVAC-QVPCDKMGAGKQL 175
Query: 183 MKAMVSHLEKIFNKNDQGLKTEDSSELSSTPSDYEDCVEEHPPSHNFEEAIKMMQSRENE 242
+KA+ + L +IF K ++ K+ DSSELS++ SDYED V+E+ +FEEAI +M+S +++
Sbjct: 176 LKAIANGLHRIFKKKEENSKSGDSSELSTSLSDYEDSVQENSSPCSFEEAIALMESGDDK 235
Query: 243 GDMPENLQGGILLDQLYQVSPCDLNTFLFAPDSQFRKDLAELQGTKDVQEGPWEWKSGEM 302
+MPENL GG+L+DQ+Y VSP DLN FLFAP+SQF KD+ ELQGT +VQEGPW WK+G+M
Sbjct: 236 PEMPENLPGGVLVDQIYLVSPNDLNVFLFAPNSQFSKDMVELQGTTNVQEGPWTWKNGDM 295
Query: 303 TCLTRAVSYMKAATKLVKAVKATEQQTYLKANGQEFAILVTVSTPDVPYGNTFNVQLLYK 362
+CLTR V+Y KAATKL+KAV A E+QTY++ + +EFAILV+VSTP+VPYGN+F ++LLYK
Sbjct: 296 SCLTRVVTYTKAATKLIKAVNAIEEQTYIRVSRKEFAILVSVSTPEVPYGNSFRIELLYK 355
Query: 363 IIPGPELSSGEDSSHLIISWGIDFHQSTMMRGMIEGGARQGLKESFEQFANLLAQNLKIL 422
I+PG E SSGE+SSHL++SWGI F QSTMM+GMIEGGARQGLKES QF++ LA N K+L
Sbjct: 356 IMPG-EASSGEESSHLVVSWGIVFLQSTMMKGMIEGGARQGLKESLVQFSDQLALNFKVL 414
Query: 423 DSKDASDKDHMLATLQTEQQSDWELASEYFWNFTVVSAGFMILYVVVHILLCEPSKRQGL 482
D D DK+H+LATLQTE Q +W YFWNFTV S FM LYV+VHIL C PS QGL
Sbjct: 415 DKADLPDKEHLLATLQTEDQWNWWQTITYFWNFTVASTIFMFLYVLVHILRCGPSLPQGL 474
Query: 483 EFYGLDLPDSFGELISCGILVIQLEQVFNMVGHFVRARLRKGSDHGVKAQGDGWVLTVAL 542
EF GL+LPDSFGELI+ GIL+IQL++V+NMV HFV+AR + G+DHG+KA GDGWVLTVAL
Sbjct: 475 EFSGLELPDSFGELITSGILIIQLQRVYNMVSHFVQARFQMGTDHGLKANGDGWVLTVAL 534
Query: 543 VEGVNLASSEMTGLSDPYVVFTCNGKTRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVE 602
+EGV+LAS E GLSDPYVVFTCNG+TR+SSV+LQ DP W++ILEFDAMEEPPSVL VE
Sbjct: 535 IEGVDLASLESEGLSDPYVVFTCNGQTRSSSVKLQMPDPLWNEILEFDAMEEPPSVLHVE 594
Query: 603 VFDFDGPFDQATSLGHAEINFLKHTSTELADMWVSLEGKLAQSAQSKVHLRIFLENNNGV 662
VFDFDGPFDQ SLGHAEINFLKHTSTELADMWV LEGKLAQS+QSK+HLRIFL+NNNGV
Sbjct: 595 VFDFDGPFDQDVSLGHAEINFLKHTSTELADMWVMLEGKLAQSSQSKLHLRIFLDNNNGV 654
Query: 663 ETIKEYLTKMEKEVGKK---------------------------------------GRLF 683
ETIKEYL KMEKEVGKK GRLF
Sbjct: 655 ETIKEYLEKMEKEVGKKLNLRSPQRNSTFQKLFALPPEEFLIKDFTCYLKRKMPLQGRLF 714
Query: 684 LSARIVGFYANLFGNKTKFFFLWEDIEDIQILSPSLATVGSPSLVIILWKGRGLDARHGA 743
LSARI+GF+ANLFG+KTKFFFLWEDIE+IQ+L PSLAT+GSP+LVIIL +GRGLDARHGA
Sbjct: 715 LSARILGFHANLFGHKTKFFFLWEDIEEIQVLPPSLATLGSPTLVIILRRGRGLDARHGA 774
Query: 744 KSQDEEGRLRFYFQSFVSFNDASRTIMALWRSRTLTAYQKEQIAEEQQVQEEMSTAADRG 803
K+QDEEGRLRF+FQSFVSF+ ASRTI ALWR+R L YQKEQI+EE + QE D
Sbjct: 775 KTQDEEGRLRFHFQSFVSFSAASRTIKALWRTRILNPYQKEQISEEHEDQESFVILEDSA 834
Query: 804 SVPNFEDAKMSKVYNAELPISVKALMEMFDGGKLEHQVMEKSGCHNYVTTPWDLVKPGVC 863
S+ E+ KMS++++AELPI +K++M +FDGG LEH++M+++GC NY TT W+ VKP
Sbjct: 835 SILEDEE-KMSRIFSAELPIKMKSVMGIFDGGNLEHKIMQRTGCMNYETTSWEQVKPDFF 893
Query: 864 ERHLSYRFNRHVSIFGGEVTCTQQKSPLASGEGWIVNEVMSLHDVPFDDHFRVHFRYEIE 923
ERH+SY+FNRHVS+FGGEVTCTQQK P + GW V EVM+LH VPF DHF +HFRYEIE
Sbjct: 894 ERHVSYQFNRHVSVFGGEVTCTQQKFPNTNTGGWTVIEVMALHSVPFADHFHIHFRYEIE 953
Query: 924 KSPLAHNACKCAIYIGISWLKSTKFQQRITQNITEKFTHRLKEMIELVEREILFATQ 980
KS L ACKC YIGI WLKS+KFQQRI +NIT KF RLKE+ ELV++EIL +Q
Sbjct: 954 KSSLGDCACKCDAYIGIMWLKSSKFQQRINRNITAKFNLRLKEIFELVQKEILLMSQ 1010
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356518944|ref|XP_003528135.1| PREDICTED: C2 and GRAM domain-containing protein At5g50170-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1251 bits (3238), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 634/1020 (62%), Positives = 778/1020 (76%), Gaps = 53/1020 (5%)
Query: 5 RLYVYVLQGQDLLAKDSYVKVQIGKHKSKSRILKNNSNPVWNEEFVFRVHNIDDEELVVS 64
RLYV VL+ +DL KD+YV +++GK K K+RIL+N NPVWNEEF F+VH +D +V
Sbjct: 3 RLYVCVLETKDLPVKDTYVTLRLGKLKCKTRILRNTWNPVWNEEFGFKVHGAEDVLVVSV 62
Query: 65 VFQHNDD----SGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTNKDC 120
V H+++ S GS E +G VR+PV S+A ED L PTWFSLE+PK+ +F NK C
Sbjct: 63 VVNHDNNNKCRSVTNGSVVEFVGEVRIPVGSVAFEDKQTLLPTWFSLESPKSGRFFNKYC 122
Query: 121 GKILLTISLNGKGHNLSSNRLLYLHSNVSSNESKELEDPCVLSHDVSCSKAPCLDVTEGN 180
GKILLT+SL+GKG + +++ +S ++ S++LE L ++ C + G
Sbjct: 123 GKILLTVSLHGKGRSFMNHKH-SPNSTIAVENSRDLEGLHFLC------QSHCDKMGVGK 175
Query: 181 HLMKAMVSHLEKIFNKNDQGLKTEDSSELSSTPSDYEDCVEEHPPSHNFEEAIKMMQSRE 240
L+K + + L +IF K + DSSELSS+ SDYED V E+ +FEE+I +M+SR+
Sbjct: 176 QLLKDIANGLHRIFKKKEGNSNFGDSSELSSSLSDYEDSVHENTFPCSFEESIALMESRD 235
Query: 241 -NEGDMPENLQGGILLDQLYQVSPCDLNTFLFAPDSQFRKDLAELQGTKDVQEGPWEWKS 299
N+ +MPENL GIL+DQ+Y VSP DLN FLFAP+SQF KD+AELQGT +VQEGPW WK+
Sbjct: 236 DNKPEMPENLPVGILVDQIYLVSPNDLNVFLFAPNSQFSKDMAELQGTTNVQEGPWTWKN 295
Query: 300 GEMTCLTRAVSYMKAATKLVKAVKATEQQTYLKANGQEFAILVTVSTPDVPYGNTFNVQL 359
G+ +CLTR V+YMKAATKL+KAV A E+QTY++ + +EFAILV+VSTP+VPYGN+F ++L
Sbjct: 296 GDTSCLTRVVTYMKAATKLIKAVNAIEEQTYIRVSRKEFAILVSVSTPEVPYGNSFRIEL 355
Query: 360 LYKIIPGPELSSGEDSSHLIISWGIDFHQSTMMRGMIEGGARQGLKESFEQFANLLAQNL 419
LYKI+PG E+SSGE+SSHL++SWGI F QSTMM+GMIEGGARQGLKESF QF++ LA+N
Sbjct: 356 LYKIMPG-EVSSGEESSHLVVSWGIVFLQSTMMKGMIEGGARQGLKESFSQFSDQLARNF 414
Query: 420 KILDSKDASDKDHMLATLQTEQQSDWELASEYFWNFTVVSAGFMILYVVVHILLCEPSKR 479
K+LD D DK+H+LATLQTE Q W YFWNFTV S FM LYV+VHIL C P+
Sbjct: 415 KVLDKADLPDKEHLLATLQTEDQWYWWQTITYFWNFTVASTIFMFLYVLVHILRCGPNLL 474
Query: 480 QGLEFYGLDLPDSFGELISCGILVIQLEQVFNMVGHFVRARLRKGSDHGVKAQGDGWVLT 539
QGLEF GL+LPDSFGELI+ GIL+IQL++V+NMV HFV+AR + G+DHG+KA GDGWVLT
Sbjct: 475 QGLEFSGLELPDSFGELITSGILIIQLQRVYNMVSHFVQARFQMGTDHGLKAHGDGWVLT 534
Query: 540 VALVEGVNLASSEMTGLSDPYVVFTCNGKTRTSSVQLQTCDPQWHDILEFDAMEEPPSVL 599
VAL+EGV+LAS E GLSDPYVVFTCNG+TR+SSV+LQT DPQW++ILEFDAMEEPPSVL
Sbjct: 535 VALIEGVDLASLESEGLSDPYVVFTCNGQTRSSSVKLQTSDPQWNEILEFDAMEEPPSVL 594
Query: 600 DVEVFDFDGPFDQATSLGHAEINFLKHTSTELADMWVSLEGKLAQSAQSKVHLRIFLENN 659
VEVFDFDGPFDQ SLGHAEINFL+HTSTELADMWV LEGKLAQS+QSK+HLRIFL+NN
Sbjct: 595 HVEVFDFDGPFDQDVSLGHAEINFLRHTSTELADMWVMLEGKLAQSSQSKLHLRIFLDNN 654
Query: 660 NGVETIKEYLTKMEKEVGKK---------------------------------------G 680
NGVETIKEYL KMEKEVGKK G
Sbjct: 655 NGVETIKEYLEKMEKEVGKKLNLRSPQRNSTFQKLFALPPEEFLIKDFTCYLKRKMPLQG 714
Query: 681 RLFLSARIVGFYANLFGNKTKFFFLWEDIEDIQILSPSLATVGSPSLVIILWKGRGLDAR 740
RLFLSARI+GF+ANLFG+KTKFFFLWEDIE+IQ+L PSLAT+GSP+LVI+L +GRGLDAR
Sbjct: 715 RLFLSARILGFHANLFGHKTKFFFLWEDIEEIQVLPPSLATLGSPTLVIVLRRGRGLDAR 774
Query: 741 HGAKSQDEEGRLRFYFQSFVSFNDASRTIMALWRSRTLTAYQKEQIAEEQQVQEEMSTAA 800
HGAK+QDEEGRLRF+FQSFVSF+ ASR I ALWR+R L YQKEQI+EE + QE
Sbjct: 775 HGAKTQDEEGRLRFHFQSFVSFSAASRAIKALWRTRILNPYQKEQISEEHEDQERFVIPE 834
Query: 801 DRGSVPNFEDAKMSKVYNAELPISVKALMEMFDGGKLEHQVMEKSGCHNYVTTPWDLVKP 860
D S+ E+ KMS++++AELPI +K++M +FDGG LEH++M+++GC NY TT W+ VK
Sbjct: 835 DSASILEDEE-KMSRIFSAELPIKMKSVMGIFDGGNLEHKIMQRTGCTNYETTSWEQVKH 893
Query: 861 GVCERHLSYRFNRHVSIFGGEVTCTQQKSPLASGEGWIVNEVMSLHDVPFDDHFRVHFRY 920
V ER +SY+FNRHVS FGGEVTCTQQK P A+ GW V EVM LH VPF DHF +HFRY
Sbjct: 894 DVFERRVSYQFNRHVSAFGGEVTCTQQKFPNANTGGWTVIEVMDLHGVPFADHFHIHFRY 953
Query: 921 EIEKSPLAHNACKCAIYIGISWLKSTKFQQRITQNITEKFTHRLKEMIELVEREILFATQ 980
EIEKS L ACKC YIGI WLKS+KFQQRI +NIT KF RLKE+ ELV++EIL +Q
Sbjct: 954 EIEKSSLGDCACKCDAYIGIMWLKSSKFQQRINRNITAKFNLRLKEIFELVQKEILLMSQ 1013
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357461815|ref|XP_003601189.1| GRAM domain-containing protein 1B [Medicago truncatula] gi|355490237|gb|AES71440.1| GRAM domain-containing protein 1B [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 1231 bits (3186), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 603/1018 (59%), Positives = 774/1018 (76%), Gaps = 51/1018 (5%)
Query: 5 RLYVYVLQGQDLLAKDSYVKVQIGKHKSKSRILKNNSNPVWNEEFVFRVHNIDDEELVVS 64
+LYV VL+ +DL K+S VK+++GK K K+RILKN NP+WNEEFVF+V +I ++ LVV+
Sbjct: 4 KLYVCVLEAKDLPVKNSRVKLKLGKFKYKTRILKNTFNPIWNEEFVFKVKDIAEDVLVVN 63
Query: 65 VFQHNDDSGLFGSSGELMGRVRVPVSSIAAEDN-HMLPPTWFSLE-TPKTRKFTNKDCGK 122
V H+D S + + +G VR+PV S+ EDN +LPPTWF L+ + K KF NK CGK
Sbjct: 64 VVNHSDQSKVV----DFVGEVRIPVGSVGFEDNKQILPPTWFELQCSNKNGKFFNKFCGK 119
Query: 123 ILLTISLNGKGHNLSSNRLLYLHSNVSSNESKELEDPCVLSHDVSCSKAPCLDVTEGNHL 182
ILLTISL+ K H N +S S +S E E + SH S + EG HL
Sbjct: 120 ILLTISLHYKDHVSFMNHKHSPNSTASIKDSTESERLHISSHQ---SFHKNRKMGEGKHL 176
Query: 183 MKAMVSHLEKIFNKNDQGLKTEDSSELSSTPSDYEDCVEEHPPSHNFEEAIKMMQSRENE 242
+KA+ LE+I +K ++ K D SE S++ SDYED V+E+ P +FEE I +MQSR+N+
Sbjct: 177 LKAIADRLERILHKKERNSKPVDCSETSNSLSDYEDSVQENSPPCSFEEGIALMQSRDNQ 236
Query: 243 GDMPENLQGGILLDQLYQVSPCDLNTFLFAPDSQFRKDLAELQGTKDVQEGPWEWKSGEM 302
+ PENLQGGIL+D++Y+VSP +LN LF PDSQFRKDLAE QGT ++QEG W WK +M
Sbjct: 237 PESPENLQGGILVDKIYEVSPYNLNVVLFVPDSQFRKDLAEQQGTTNLQEGAWSWKDEDM 296
Query: 303 TCLTRAVSYMKAATKLVKAVKATEQQTYLKANGQEFAILVTVSTPDVPYGNTFNVQLLYK 362
+CLTR V+Y KAA+KLVKA+ TE+QTY++A EF +LV+V TP+VPYGN+F V++LYK
Sbjct: 297 SCLTRVVNYTKAASKLVKALNTTEEQTYIRATKDEFDVLVSVCTPEVPYGNSFRVEILYK 356
Query: 363 IIPGPELSSGEDSSHLIISWGIDFHQSTMMRGMIEGGARQGLKESFEQFANLLAQNLKIL 422
I+PG ++S ++SSHL+I+WG+ F QSTMM+G+IE GA+QGLKESF+QFANLLAQ K+L
Sbjct: 357 IMPGEDVSCVKESSHLVITWGMVFLQSTMMKGVIENGAKQGLKESFDQFANLLAQRFKVL 416
Query: 423 DSKDASDKDHMLATLQTEQQSDWELASEYFWNFTVVSAGFMILYVVVHILLCEPSKRQGL 482
D +D +K+H+LATLQTE Q +W A YFWNFTVVS FM LYV++HIL C PS+ +GL
Sbjct: 417 DKEDLINKEHLLATLQTESQWNWWQAITYFWNFTVVSTFFMCLYVLLHILRCGPSQPRGL 476
Query: 483 EFYGLDLPDSFGELISCGILVIQLEQVFNMVGHFVRARLRKGSDHGVKAQGDGWVLTVAL 542
EF G++LPDS GEL++ GILVIQLE+V++MV HFV+AR + G+DHG+KA GDGWV+TVAL
Sbjct: 477 EFRGIELPDSLGELVTSGILVIQLERVYHMVSHFVQARFQMGTDHGMKAHGDGWVVTVAL 536
Query: 543 VEGVNLASSEMTGLSDPYVVFTCNGKTRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVE 602
+EGV+L S E TGLSDPYVVFTCNG+TR+SSV+L+T DPQW++ILEFDAMEEPPSVL VE
Sbjct: 537 IEGVDLVSLESTGLSDPYVVFTCNGQTRSSSVKLETSDPQWNEILEFDAMEEPPSVLYVE 596
Query: 603 VFDFDGPFDQATSLGHAEINFLKHTSTELADMWVSLEGKLAQSAQSKVHLRIFLENNNGV 662
VFDFDGPFDQ SLGHAEINFLKHTSTELADMWV LEGKLAQSAQSK+HLRIFL+NN GV
Sbjct: 597 VFDFDGPFDQDVSLGHAEINFLKHTSTELADMWVVLEGKLAQSAQSKLHLRIFLDNNKGV 656
Query: 663 ETIKEYL---------------------------------------TKMEKEVGKKGRLF 683
IK+YL +++++ +GRLF
Sbjct: 657 AIIKDYLEKKEKEVGKKFNLPSPQRNSTFQKLFGLPPEEFLINDFTCSLKRKLHLQGRLF 716
Query: 684 LSARIVGFYANLFGNKTKFFFLWEDIEDIQILSPSLATVGSPSLVIILWKGRGLDARHGA 743
LSAR++GFYANLFG+KTKFFFLWEDI++IQ+L PSLA++GSP+L +IL +GRG+DARHGA
Sbjct: 717 LSARVLGFYANLFGHKTKFFFLWEDIDNIQVLPPSLASLGSPTLAVILRRGRGIDARHGA 776
Query: 744 KSQDEEGRLRFYFQSFVSFNDASRTIMALWRSRTLTAYQKEQIAEEQQVQEEMSTAADRG 803
K+QDEEGRLRF+FQSFVSF ASRTIMALWR+R L YQKEQI EE + QE + D G
Sbjct: 777 KTQDEEGRLRFHFQSFVSFGSASRTIMALWRARILNPYQKEQITEEHEDQEVLVMPEDSG 836
Query: 804 SVPNFEDAKMSKVYNAELPISVKALMEMFDGGKLEHQVMEKSGCHNYVTTPWDLVKPGVC 863
S+ ++AKMS++Y+AELPI ++++M +FDGG +EH++M+++GC +Y TTPW+ VKP V
Sbjct: 837 SILE-DEAKMSRIYSAELPIKIRSMMGIFDGGNIEHKIMKRTGCMDYDTTPWEPVKPDVL 895
Query: 864 ERHLSYRFNRHVSIFGGEVTCTQQKSPLASGEGWIVNEVMSLHDVPFDDHFRVHFRYEIE 923
ERH++Y+FNRHVS+F +VT TQQK P + EGWIVNEVM L+ VPF DHFR+HFRYEIE
Sbjct: 896 ERHVTYQFNRHVSVF--DVTSTQQKYPNTNTEGWIVNEVMILNGVPFSDHFRIHFRYEIE 953
Query: 924 KSPLAHNACKCAIYIGISWLKSTKFQQRITQNITEKFTHRLKEMIELVEREILFATQQ 981
KS L ACKC +YIGI WL+S+KFQ+RI +NIT KF RL+E+ EL+++EIL + +
Sbjct: 954 KSALGECACKCDVYIGIMWLRSSKFQKRINRNITSKFKIRLEEIFELLQKEILLMSHK 1011
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15240629|ref|NP_199828.1| C2 and GRAM domain-containing protein [Arabidopsis thaliana] gi|75309065|sp|Q9FGS8.1|C2GR2_ARATH RecName: Full=C2 and GRAM domain-containing protein At5g50170 gi|9759019|dbj|BAB09388.1| unnamed protein product [Arabidopsis thaliana] gi|15810203|gb|AAL07002.1| AT5g50170/K6A12_3 [Arabidopsis thaliana] gi|32815845|gb|AAP88330.1| At5g50170/K6A12_3 [Arabidopsis thaliana] gi|332008523|gb|AED95906.1| C2 and GRAM domain-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1129 bits (2921), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 565/1020 (55%), Positives = 745/1020 (73%), Gaps = 54/1020 (5%)
Query: 5 RLYVYVLQGQDLLAKDSYVKVQIGKHKSKSRILKNNSNPVWNEEFVFRVHNIDDEELVVS 64
RLYVY+LQ +DL AK+++ K+ +G+HKSK+R+ ++ S+P+WNEEFVFR+ ++D+ + VV
Sbjct: 2 RLYVYILQAKDLPAKETFAKLHVGRHKSKTRVARDTSSPIWNEEFVFRISDVDEGDDVVV 61
Query: 65 VFQHND--DSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTNKDCGK 122
H++ D S+G L+G+VR+P++S+AAE+N L PTWF +E P KF N +CGK
Sbjct: 62 SILHHEQQDHQSIVSTG-LIGKVRIPLTSVAAEENQTLLPTWFVIEKPSDGKFVNIECGK 120
Query: 123 ILLTISLNGKGHNLSSNRLLYLHSNVSSNES-KELE-DPCVLSHDVSCSKAPCLDVTEGN 180
ILL++SL GK + S ++L ++ + E KELE P L +S +G
Sbjct: 121 ILLSLSLQGKWESTSGEKVLNDKQDIINLEGVKELEGSPKDL---ISSRDGKRRKHHDGK 177
Query: 181 HLMKAMVSHLEKIFNKNDQGLKT--EDSSELSSTPSDYEDCVEEHPPSHN---FEEAIKM 235
H+MK +V+H++K+F+K ++ K ++SS S S+YED ++ S FEE + +
Sbjct: 178 HIMKNIVNHIDKLFHKKEEISKRLHDESSVGQSVNSNYEDATDQCSSSATCTGFEEGLDL 237
Query: 236 MQSRENEGD-MPENLQGGILLDQLYQVSPCDLNTFLFAPDSQFRKDLAELQGTKDVQEGP 294
MQS ++E + MPENL GG+L+DQ Y VSPC+LN FLF P SQFRK+LAELQG DVQEGP
Sbjct: 238 MQSSDSEREEMPENLTGGVLVDQKYLVSPCELNKFLFTPSSQFRKELAELQGLSDVQEGP 297
Query: 295 WEWKSGEMTCLTRAVSYMKAATKLVKAVKATEQQTYLKANGQEFAILVTVSTPDVPYGNT 354
W + LTR V+YM+AATK+VKAVKATE Q Y KA+G++FA+ V+VSTPDVPYGNT
Sbjct: 298 WTMMQEDTPRLTRVVTYMRAATKMVKAVKATENQVYRKASGKQFAVFVSVSTPDVPYGNT 357
Query: 355 FNVQLLYKIIPGPELSSGEDSSHLIISWGIDFHQSTMMRGMIEGGARQGLKESFEQFANL 414
F ++LLYKI+P E ++G ++S LIISWGI F QST+M+GMIEGGARQGLKESFEQF+NL
Sbjct: 358 FKIELLYKILPETEPTAGGEASRLIISWGIQFSQSTIMKGMIEGGARQGLKESFEQFSNL 417
Query: 415 LAQNLKILDSKDASDKDHMLATLQTEQQSDWELASEYFWNFTVVSAGFMILYVVVHILLC 474
LA+ K LD DK+ ++AT+Q+E ++D + A YFW+ +V+ A + +YVVVH+L C
Sbjct: 418 LAKTYKTLDPAVVLDKEQVIATVQSEPKTDLKSAFLYFWSSSVICAVLLSVYVVVHMLHC 477
Query: 475 EPSKRQGLEFYGLDLPDSFGELISCGILVIQLEQVFNMVGHFVRARLRKGSDHGVKAQGD 534
EPSK QG EFYGLDLPDSFGEL S GILV+ LE+V+ M HFV+ARL +G D GVKA G
Sbjct: 478 EPSKIQGFEFYGLDLPDSFGELFSSGILVLLLERVYIMTVHFVQARLHRGRDQGVKANGK 537
Query: 535 GWVLTVALVEGVNLASSEMTGLSDPYVVFTCNGKTRTSSVQLQTCDPQWHDILEFDAMEE 594
GW+LT+AL++G NLAS E T L DPYVVFTCNGKTRTSSV+LQ DPQW++++EFDAMEE
Sbjct: 538 GWILTIALIKGTNLASVEATELFDPYVVFTCNGKTRTSSVKLQAQDPQWNEVIEFDAMEE 597
Query: 595 PPSVLDVEVFDFDGPFDQATSLGHAEINFLKHTSTELADMWVSLEGKLAQSAQSKVHLRI 654
PPSVLDVEVFDFDGPFDQ SLGHAEINFLKHT+ ELAD+ V+L G AQ++QSK+ LRI
Sbjct: 598 PPSVLDVEVFDFDGPFDQGASLGHAEINFLKHTADELADLSVALVGNHAQASQSKLQLRI 657
Query: 655 FLENNNGVETIKEYLTKMEKEVGKK----------------------------------- 679
FLEN NGVET+K+YL+K+EKEVGKK
Sbjct: 658 FLENKNGVETMKDYLSKVEKEVGKKLNIRSPQKNSAFQKLFGLPHEEFLLKEYTCYLKRK 717
Query: 680 ----GRLFLSARIVGFYANLFGNKTKFFFLWEDIEDIQILSPSLATVGSPSLVIILWKGR 735
G+LFLSARIV FY+N+FG+KTKF+FLWEDI+DIQ+L P+ A++GSP L+IIL K R
Sbjct: 718 LPVQGKLFLSARIVAFYSNVFGHKTKFYFLWEDIDDIQVLPPTFASLGSPLLLIILKKNR 777
Query: 736 GLDARHGAKSQDEEGRLRFYFQSFVSFNDASRTIMALWRSRTLTAYQKEQIAEEQQVQEE 795
GLDA+HGAKSQD+EGRL FYFQSFVSF+ SRTIMALW++RTL+ + QI EE Q +
Sbjct: 778 GLDAKHGAKSQDDEGRLSFYFQSFVSFDATSRTIMALWKTRTLSVDHRAQIVEEDQDVAD 837
Query: 796 MSTAADRGSVPNFEDA-KMSKVYNAELPISVKALMEMFDGGKLEHQVMEKSGCHNYVTTP 854
+ +V + DA MSKVY +LP V+ +M++F GG+LE ++MEKSGC +Y +T
Sbjct: 838 PFLLPEAVTVVSDADALMMSKVYTCDLPCDVELVMKIFGGGELERKIMEKSGCLSYASTT 897
Query: 855 WDLVKPGVCERHLSYRFNRHVSIFGGEVTCTQQKSPLASGEGWIVNEVMSLHDVPFDDHF 914
W+ KPGV ER LSY++N +VS+FGG VTC QQKSP + EGWI+NE+++LHDVPF DHF
Sbjct: 898 WESKKPGVYERRLSYKYNHYVSVFGGGVTCAQQKSPAPNDEGWILNEIVALHDVPFGDHF 957
Query: 915 RVHFRYEIEKSPLAHNACKCAIYIGISWLKSTKFQQRITQNITEKFTHRLKEMIELVERE 974
RVH RYE++K+ + KC +Y+ I WLK+ KF+QRI+++I EKF +R K + +L ++E
Sbjct: 958 RVHIRYEVKKAGVDCKTSKCEVYLKIRWLKTIKFEQRISKSIMEKFRNRFKVIFDLFQKE 1017
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297792313|ref|XP_002864041.1| C2 domain-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297309876|gb|EFH40300.1| C2 domain-containing protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 1126 bits (2913), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 565/1021 (55%), Positives = 739/1021 (72%), Gaps = 55/1021 (5%)
Query: 5 RLYVYVLQGQDLLAKDSYVKVQIGKHKSKSRILKNNSNPVWNEEFVFRVHNIDDEELVV- 63
RLYVY+LQ +DL AK+++ K +GKHKSK+R+ ++ S+P+WNEEFVFR+ ++D+ + VV
Sbjct: 2 RLYVYILQAKDLPAKETFAKFHVGKHKSKTRVARDTSSPIWNEEFVFRISDVDEGDDVVV 61
Query: 64 SVFQH---NDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTNKDC 120
S+ H D + ++G L+G+VR+P+ SIAAE+N L PTWF +E KF N +C
Sbjct: 62 SILHHEQQQDHQSIVSTTG-LIGKVRIPLCSIAAEENQTLLPTWFVIEKLSDGKFVNIEC 120
Query: 121 GKILLTISLNGKGHNLSSNRLLYLHSNVSSNESKELE-DPCVLSHDVSCSKAPCLDVTEG 179
GKILL++SL GK + S ++L +++ KEL+ P L +S +G
Sbjct: 121 GKILLSLSLQGKWESTSGEKVLNDKQDINLEGVKELQGSPKDL---ISSKDGRRRKHHDG 177
Query: 180 NHLMKAMVSHLEKIFNKNDQGLKT--EDSSELSSTPSDYEDCVEEHPPSHN---FEEAIK 234
H+MK V+ ++K+F+K ++ K +DSS + S+YED ++ S FEE +
Sbjct: 178 KHIMKNFVNQIDKLFHKKEEISKRLHDDSSVDQTVNSNYEDATDKCSSSATCTGFEEGLD 237
Query: 235 MMQSRENEGD-MPENLQGGILLDQLYQVSPCDLNTFLFAPDSQFRKDLAELQGTKDVQEG 293
+MQS ++E + MPENLQGGILLDQ Y VSPCDLN +LF P SQFRK+LAELQG DVQEG
Sbjct: 238 LMQSCDSEREEMPENLQGGILLDQKYLVSPCDLNKYLFTPSSQFRKELAELQGLSDVQEG 297
Query: 294 PWEWKSGEMTCLTRAVSYMKAATKLVKAVKATEQQTYLKANGQEFAILVTVSTPDVPYGN 353
PW + LTR V+YM+AA+K+VKAVKATE Q Y KA+G++FA+ V+VSTPDVPYGN
Sbjct: 298 PWTVMQEDTPRLTRVVTYMRAASKMVKAVKATENQVYRKASGKQFAVFVSVSTPDVPYGN 357
Query: 354 TFNVQLLYKIIPGPELSSGEDSSHLIISWGIDFHQSTMMRGMIEGGARQGLKESFEQFAN 413
TF ++LLYKI+P E ++ +SS LIISWGI F+QST+M+GMIEGGARQGL+ESFEQFAN
Sbjct: 358 TFKIELLYKILPETEPTADGESSRLIISWGIQFNQSTIMKGMIEGGARQGLRESFEQFAN 417
Query: 414 LLAQNLKILDSKDASDKDHMLATLQTEQQSDWELASEYFWNFTVVSAGFMILYVVVHILL 473
LL + K LD DKD ++AT+Q+EQ++D + A YFW+ +V A + +YVV H+L
Sbjct: 418 LLTKTYKTLDPAAVLDKDQVIATVQSEQKTDLKSAFLYFWSSSVFCAVLLSVYVVAHMLH 477
Query: 474 CEPSKRQGLEFYGLDLPDSFGELISCGILVIQLEQVFNMVGHFVRARLRKGSDHGVKAQG 533
CEPSK QG EFYGLDLPDSFGEL+S GILV+ LE+V+ M HF++ARL +G D GVKA G
Sbjct: 478 CEPSKIQGFEFYGLDLPDSFGELLSSGILVLLLERVYMMTVHFIQARLHRGRDQGVKANG 537
Query: 534 DGWVLTVALVEGVNLASSEMTGLSDPYVVFTCNGKTRTSSVQLQTCDPQWHDILEFDAME 593
GW+LT+AL++G NLAS E T L DPYVVFTCNGKTRTSSV+LQ DPQW++++EFDAME
Sbjct: 538 KGWILTIALIKGTNLASVEATELFDPYVVFTCNGKTRTSSVKLQAQDPQWNEVIEFDAME 597
Query: 594 EPPSVLDVEVFDFDGPFDQATSLGHAEINFLKHTSTELADMWVSLEGKLAQSAQSKVHLR 653
EPPSVLDVEVFDFDGPFDQ SLGHAEINFLKHT+ ELADM V L G AQ++QSK+ LR
Sbjct: 598 EPPSVLDVEVFDFDGPFDQGASLGHAEINFLKHTADELADMSVPLVGHHAQASQSKLQLR 657
Query: 654 IFLENNNGVETIKEYLTKMEKEVGKK---------------------------------- 679
IFLEN NGVET+K+YL+K+EKEVGKK
Sbjct: 658 IFLENKNGVETMKDYLSKVEKEVGKKLNIRSPQKNSAFQKLFGLPHEEFLLKEYTCYLKR 717
Query: 680 -----GRLFLSARIVGFYANLFGNKTKFFFLWEDIEDIQILSPSLATVGSPSLVIILWKG 734
G+LFLSARIV FY+N+FG+KTKF+FLWEDI+DIQ+L P+ A++GSP L+IIL K
Sbjct: 718 KLPVQGKLFLSARIVAFYSNVFGHKTKFYFLWEDIDDIQVLPPTFASLGSPLLLIILKKN 777
Query: 735 RGLDARHGAKSQDEEGRLRFYFQSFVSFNDASRTIMALWRSRTLTAYQKEQIAEE-QQVQ 793
RGLDA+HGAKSQD+EGRL FYFQSFVSF+ SRTIMALW++RTL+ + QIAEE Q V
Sbjct: 778 RGLDAKHGAKSQDDEGRLWFYFQSFVSFDATSRTIMALWKTRTLSVDHRAQIAEEDQDVA 837
Query: 794 EEMSTAADRGSVPNFEDAKMSKVYNAELPISVKALMEMFDGGKLEHQVMEKSGCHNYVTT 853
+ V + + MSKVY +LP V+ +M++F GG+LE ++MEKSGC +Y +T
Sbjct: 838 DPFLLPEAVAVVSDTDALMMSKVYTCDLPGDVELVMKIFGGGELERKIMEKSGCLSYAST 897
Query: 854 PWDLVKPGVCERHLSYRFNRHVSIFGGEVTCTQQKSPLASGEGWIVNEVMSLHDVPFDDH 913
W+ KPG+ ER LSY++N +VS+FGG VTCTQQKSP + EGWI+NE+++LHDVPF DH
Sbjct: 898 TWESKKPGIYERRLSYKYNHYVSVFGGGVTCTQQKSPAPNDEGWIINEIVALHDVPFGDH 957
Query: 914 FRVHFRYEIEKSPLAHNACKCAIYIGISWLKSTKFQQRITQNITEKFTHRLKEMIELVER 973
FRVH RYE++K+ + KC +Y+ I WLK+ KF+QRI+++I EKF +R K + +L ++
Sbjct: 958 FRVHIRYEVKKAGVDCKTSKCEVYLKIRWLKTIKFEQRISKSIMEKFRNRFKVIFDLFQK 1017
Query: 974 E 974
E
Sbjct: 1018 E 1018
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224124726|ref|XP_002329933.1| predicted protein [Populus trichocarpa] gi|222871955|gb|EEF09086.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 969 bits (2504), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 503/1030 (48%), Positives = 686/1030 (66%), Gaps = 66/1030 (6%)
Query: 1 MVSTRLYVYVLQGQDLLA------KDSYVKVQIGKHKSKSRILKNNSNPVWNEEFVFRVH 54
M RL+V V++ ++L D Y K+++GK K K++++K N NP W EEF F+V
Sbjct: 1 MGGLRLFVRVIEARNLPPTDPNGLSDPYAKLRLGKQKCKTKVVKKNLNPSWEEEFSFKVE 60
Query: 55 NIDDEELVVSVFQHNDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRK 114
+++ E+LVV V D+ F + +G ++VPVS + ++ L W+SL+ PK +K
Sbjct: 61 DLN-EDLVVCVL---DEDKFFND--DFVGLIKVPVSRVFDAEDKSLGTAWYSLQ-PKNKK 113
Query: 115 FTNKDCGKILLTISLNGKGHNLSSNRLLYLHSNVSSNESKELEDPCVLSHDVSCSKAPCL 174
K+CG+ILL+I ++ +L+ N NV +S + + + S+
Sbjct: 114 SKIKECGEILLSICVSQSFPDLNCNGS---RKNVDIMQSPSRSFNGMTNSSSARSEETAS 170
Query: 175 DVTEGNHLMKAMVSHLEKIFNKNDQGLK--TEDSSELS--STPSDYEDC---VEEHPPSH 227
+ K + + +IFNKN + T S+E+S S E C E+ S
Sbjct: 171 SKEDKFFAQKNLAGRIAQIFNKNSDAISATTSRSTEISEQSETDGSEVCDEKAEDQSSSD 230
Query: 228 NFEEAIKMMQSRENEGDMPENLQGGILLDQLYQVSPCDLNTFLFAPDSQFRKDLAELQGT 287
NFEE +K M+SR+ ++P+NL GG+L+DQ Y ++ DLN+ LF+PDS F + L++ G
Sbjct: 231 NFEELMKEMKSRDVGSEVPKNLPGGVLVDQSYLIATPDLNSLLFSPDSSFARSLSDFLGN 290
Query: 288 KDVQEGPWEWKSGEMTCLTRAVSYMKAATKLVKAVKATEQQTYLKANGQEFAILVTVSTP 347
+ Q GPW++++G + L R ++Y++A +KLV AVKA+E Q Y+K +G+ FAIL VSTP
Sbjct: 291 SEQQFGPWKFENGSGS-LKRVITYVRAPSKLVGAVKASEDQIYVKVDGKTFAILNCVSTP 349
Query: 348 DVPYGNTFNVQLLYKIIPGPELSSGEDSSHLIISWGIDFHQSTMMRGMIEGGARQGLKES 407
DV YG+TF V+LLY I PGPEL SGE++SHL+ISW ++F QSTM + MIE GAR GLK+S
Sbjct: 350 DVMYGSTFKVELLYCITPGPELPSGEETSHLVISWRMNFLQSTMFKSMIENGARAGLKDS 409
Query: 408 FEQFANLLAQNLKILDSKD-ASDKDHMLATLQTEQQSDWELASEYFWNFTVVSAGFMILY 466
FEQF+ L+Q +K +D KD S K+ +LA+L+ E QSD +LA +YF NFTVVSA FM LY
Sbjct: 410 FEQFSTFLSQTVKPVDLKDMGSSKEQVLASLKAEPQSDRKLAVQYFANFTVVSAFFMGLY 469
Query: 467 VVVHILLCEPSKRQGLEFYGLDLPDSFGELISCGILVIQLEQVFNMVGHFVRARLRKGSD 526
V VHI L PS QGLEF GLDLPDS GE++ C +L +Q E+V ++ F++AR +KG+D
Sbjct: 470 VFVHIWLAAPSAIQGLEFLGLDLPDSIGEVLVCSVLALQCERVLGLLSRFMQARAQKGTD 529
Query: 527 HGVKAQGDGWVLTVALVEGVNLASSEMTGLSDPYVVFTCNGKTRTSSVQLQTCDPQWHDI 586
HGVKAQGDGW+LTVAL+EG +L + + +G DPYVVFTCNGKT+TSS++ Q DP W++I
Sbjct: 530 HGVKAQGDGWLLTVALIEGSHLPTVDSSGFCDPYVVFTCNGKTKTSSIKFQKSDPLWNEI 589
Query: 587 LEFDAMEEPPSVLDVEVFDFDGPFDQATSLGHAEINFLKHTSTELADMWVSLEGKLAQSA 646
EFDAM++PPSVLDV+V+DFDGPFD+A SLGH EINF+K ++LAD+WV L+GKLAQ+
Sbjct: 590 FEFDAMDDPPSVLDVDVYDFDGPFDEAMSLGHTEINFVKSNLSDLADVWVPLQGKLAQAC 649
Query: 647 QSKVHLRIFLENNNGVETIKEYLTKMEKEVGKK--------------------------- 679
QSK+HLRIFL N G +KEYL+KMEKEVGKK
Sbjct: 650 QSKLHLRIFLNNTRGSNVVKEYLSKMEKEVGKKINVRSPQTNSAFQKVFGLPPEEFLIND 709
Query: 680 ------------GRLFLSARIVGFYANLFGNKTKFFFLWEDIEDIQILSPSLATVGSPSL 727
GRLFLSARI+GFYANLF KTKFFFLWEDIEDIQI +P+L+++GSP +
Sbjct: 710 FTCHLKRKMPLQGRLFLSARIIGFYANLFRQKTKFFFLWEDIEDIQIYTPTLSSMGSPVI 769
Query: 728 VIILWKGRGLDARHGAKSQDEEGRLRFYFQSFVSFNDA-SRTIMALWRSRTLTAYQKEQI 786
VI L +G+G+DARHGAK+ D+EGRL+F+FQSFVSFN A SRTIMALW++R+L+ QK QI
Sbjct: 770 VITLRQGKGMDARHGAKNIDDEGRLKFHFQSFVSFNVAHSRTIMALWKARSLSLEQKVQI 829
Query: 787 AEEQQVQEEMSTAADRGSVPNFEDAKMSKVYNAELPISVKALMEMFDGGKLEHQVMEKSG 846
EE + + T + GS ED MS+VY A + +MEMF GG+L+ +VMEK+G
Sbjct: 830 VEEDSETKILQT-EESGSFLGLEDVSMSEVYAASFSVPTNFVMEMFGGGELDRKVMEKAG 888
Query: 847 CHNYVTTPWDLVKPGVCERHLSYRFNRHVSIFGGEVTCTQQKSPLASGEGWIVNEVMSLH 906
C +Y TPW+ VK V ER + YRF++ +S FGGEVT TQQK PL+ +GW+V EVM+LH
Sbjct: 889 CLSYSYTPWESVKTDVHERQIYYRFDKRISRFGGEVTSTQQKYPLSDRKGWLVEEVMTLH 948
Query: 907 DVPFDDHFRVHFRYEIEKSPLAHNACKCAIYIGISWLKSTKFQQRITQNITEKFTHRLKE 966
VP D+F +H RY++E P C + IGI WLKST+ Q+RI++NI RLK
Sbjct: 949 GVPLGDYFNLHLRYQVEDFPSRLKGCHVRVSIGIQWLKSTRHQKRISKNILSNLQDRLKV 1008
Query: 967 MIELVEREIL 976
+ LVE+E +
Sbjct: 1009 IFSLVEKEFV 1018
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9FGS8 | C2GR2_ARATH | No assigned EC number | 0.5539 | 0.9807 | 0.9406 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 985 | |||
| cd13219 | 161 | cd13219, PH-GRAM_C2-GRAM, C2 and GRAM domain-conta | 8e-64 | |
| cd00030 | 102 | cd00030, C2, C2 domain | 5e-20 | |
| smart00239 | 101 | smart00239, C2, Protein kinase C conserved region | 3e-18 | |
| pfam00168 | 85 | pfam00168, C2, C2 domain | 3e-17 | |
| cd04019 | 150 | cd04019, C2C_MCTP_PRT_plant, C2 domain third repea | 2e-16 | |
| cd00030 | 102 | cd00030, C2, C2 domain | 6e-16 | |
| cd04025 | 123 | cd04025, C2B_RasA1_RasA4, C2 domain second repeat | 2e-13 | |
| pfam00168 | 85 | pfam00168, C2, C2 domain | 2e-12 | |
| cd04038 | 145 | cd04038, C2_ArfGAP, C2 domain present in Arf GTPas | 2e-12 | |
| smart00239 | 101 | smart00239, C2, Protein kinase C conserved region | 2e-11 | |
| cd08391 | 121 | cd08391, C2A_C2C_Synaptotagmin_like, C2 domain fir | 2e-11 | |
| cd04027 | 127 | cd04027, C2B_Munc13, C2 domain second repeat in Mu | 2e-11 | |
| cd04024 | 128 | cd04024, C2A_Synaptotagmin-like, C2 domain first r | 3e-11 | |
| cd04022 | 127 | cd04022, C2A_MCTP_PRT_plant, C2 domain first repea | 5e-11 | |
| cd08682 | 126 | cd08682, C2_Rab11-FIP_classI, C2 domain found in R | 7e-11 | |
| cd04011 | 111 | cd04011, C2B_Ferlin, C2 domain second repeat in Fe | 2e-10 | |
| cd08376 | 116 | cd08376, C2B_MCTP_PRT, C2 domain second repeat fou | 2e-10 | |
| cd08376 | 116 | cd08376, C2B_MCTP_PRT, C2 domain second repeat fou | 2e-10 | |
| cd00276 | 134 | cd00276, C2B_Synaptotagmin, C2 domain second repea | 3e-10 | |
| cd04050 | 105 | cd04050, C2B_Synaptotagmin-like, C2 domain second | 6e-10 | |
| cd08375 | 136 | cd08375, C2_Intersectin, C2 domain present in Inte | 6e-09 | |
| cd04017 | 135 | cd04017, C2D_Ferlin, C2 domain fourth repeat in Fe | 1e-08 | |
| cd04042 | 121 | cd04042, C2A_MCTP_PRT, C2 domain first repeat foun | 2e-08 | |
| cd04042 | 121 | cd04042, C2A_MCTP_PRT, C2 domain first repeat foun | 5e-08 | |
| cd04038 | 145 | cd04038, C2_ArfGAP, C2 domain present in Arf GTPas | 7e-08 | |
| cd04040 | 115 | cd04040, C2D_Tricalbin-like, C2 domain fourth repe | 7e-08 | |
| cd08391 | 121 | cd08391, C2A_C2C_Synaptotagmin_like, C2 domain fir | 8e-08 | |
| cd08377 | 119 | cd08377, C2C_MCTP_PRT, C2 domain third repeat foun | 8e-08 | |
| cd04040 | 115 | cd04040, C2D_Tricalbin-like, C2 domain fourth repe | 2e-07 | |
| cd04036 | 119 | cd04036, C2_cPLA2, C2 domain present in cytosolic | 2e-07 | |
| cd08405 | 136 | cd08405, C2B_Synaptotagmin-7, C2 domain second rep | 2e-07 | |
| cd04015 | 158 | cd04015, C2_plant_PLD, C2 domain present in plant | 3e-07 | |
| cd08377 | 119 | cd08377, C2C_MCTP_PRT, C2 domain third repeat foun | 4e-07 | |
| cd08378 | 121 | cd08378, C2B_MCTP_PRT_plant, C2 domain second repe | 5e-07 | |
| cd04030 | 127 | cd04030, C2C_KIAA1228, C2 domain third repeat pres | 6e-07 | |
| cd08386 | 125 | cd08386, C2A_Synaptotagmin-7, C2A domain first rep | 7e-07 | |
| cd04024 | 128 | cd04024, C2A_Synaptotagmin-like, C2 domain first r | 1e-06 | |
| cd04026 | 131 | cd04026, C2_PKC_alpha_gamma, C2 domain in Protein | 1e-06 | |
| cd08379 | 126 | cd08379, C2D_MCTP_PRT_plant, C2 domain fourth repe | 2e-06 | |
| cd08402 | 136 | cd08402, C2B_Synaptotagmin-1, C2 domain second rep | 2e-06 | |
| cd00275 | 128 | cd00275, C2_PLC_like, C2 domain present in Phospho | 2e-06 | |
| cd08385 | 124 | cd08385, C2A_Synaptotagmin-1-5-6-9-10, C2A domain | 2e-06 | |
| cd04049 | 124 | cd04049, C2_putative_Elicitor-responsive_gene, C2 | 2e-06 | |
| cd04031 | 125 | cd04031, C2A_RIM1alpha, C2 domain first repeat con | 4e-06 | |
| cd04033 | 133 | cd04033, C2_NEDD4_NEDD4L, C2 domain present in the | 5e-06 | |
| cd08403 | 134 | cd08403, C2B_Synaptotagmin-3-5-6-9-10, C2 domain s | 6e-06 | |
| cd04044 | 124 | cd04044, C2A_Tricalbin-like, C2 domain first repea | 1e-05 | |
| cd04037 | 124 | cd04037, C2E_Ferlin, C2 domain fifth repeat in Fer | 1e-05 | |
| cd08384 | 133 | cd08384, C2B_Rabphilin_Doc2, C2 domain second repe | 1e-05 | |
| pfam02893 | 60 | pfam02893, GRAM, GRAM domain | 2e-05 | |
| cd04035 | 123 | cd04035, C2A_Rabphilin_Doc2, C2 domain first repea | 2e-05 | |
| cd08675 | 137 | cd08675, C2B_RasGAP, C2 domain second repeat of Ra | 2e-05 | |
| cd04017 | 135 | cd04017, C2D_Ferlin, C2 domain fourth repeat in Fe | 3e-05 | |
| cd08403 | 134 | cd08403, C2B_Synaptotagmin-3-5-6-9-10, C2 domain s | 3e-05 | |
| cd04043 | 126 | cd04043, C2_Munc13_fungal, C2 domain in Munc13 (ma | 4e-05 | |
| COG5038 | 1227 | COG5038, COG5038, Ca2+-dependent lipid-binding pro | 4e-05 | |
| cd04051 | 125 | cd04051, C2_SRC2_like, C2 domain present in Soybea | 4e-05 | |
| cd00276 | 134 | cd00276, C2B_Synaptotagmin, C2 domain second repea | 5e-05 | |
| cd04043 | 126 | cd04043, C2_Munc13_fungal, C2 domain in Munc13 (ma | 5e-05 | |
| cd04018 | 151 | cd04018, C2C_Ferlin, C2 domain third repeat in Fer | 5e-05 | |
| smart00568 | 60 | smart00568, GRAM, domain in glucosyltransferases, | 5e-05 | |
| cd08373 | 127 | cd08373, C2A_Ferlin, C2 domain first repeat in Fer | 7e-05 | |
| cd08410 | 135 | cd08410, C2B_Synaptotagmin-17, C2 domain second re | 8e-05 | |
| cd08681 | 118 | cd08681, C2_fungal_Inn1p-like, C2 domain found in | 8e-05 | |
| cd08675 | 137 | cd08675, C2B_RasGAP, C2 domain second repeat of Ra | 9e-05 | |
| cd08384 | 133 | cd08384, C2B_Rabphilin_Doc2, C2 domain second repe | 1e-04 | |
| cd10570 | 94 | cd10570, PH-GRAM, Pleckstrin Homology-Glucosyltran | 1e-04 | |
| cd08408 | 138 | cd08408, C2B_Synaptotagmin-14_16, C2 domain second | 1e-04 | |
| cd04025 | 123 | cd04025, C2B_RasA1_RasA4, C2 domain second repeat | 2e-04 | |
| cd04049 | 124 | cd04049, C2_putative_Elicitor-responsive_gene, C2 | 2e-04 | |
| cd08387 | 124 | cd08387, C2A_Synaptotagmin-8, C2A domain first rep | 2e-04 | |
| cd04031 | 125 | cd04031, C2A_RIM1alpha, C2 domain first repeat con | 3e-04 | |
| cd08681 | 118 | cd08681, C2_fungal_Inn1p-like, C2 domain found in | 3e-04 | |
| cd08678 | 126 | cd08678, C2_C21orf25-like, C2 domain found in the | 3e-04 | |
| cd08388 | 128 | cd08388, C2A_Synaptotagmin-4-11, C2A domain first | 3e-04 | |
| cd08387 | 124 | cd08387, C2A_Synaptotagmin-8, C2A domain first rep | 4e-04 | |
| cd04046 | 126 | cd04046, C2_Calpain, C2 domain present in Calpain | 4e-04 | |
| cd04046 | 126 | cd04046, C2_Calpain, C2 domain present in Calpain | 4e-04 | |
| cd04032 | 127 | cd04032, C2_Perforin, C2 domain of Perforin | 5e-04 | |
| cd08685 | 119 | cd08685, C2_RGS-like, C2 domain of the Regulator O | 5e-04 | |
| COG5038 | 1227 | COG5038, COG5038, Ca2+-dependent lipid-binding pro | 7e-04 | |
| cd08375 | 136 | cd08375, C2_Intersectin, C2 domain present in Inte | 0.001 | |
| cd08404 | 136 | cd08404, C2B_Synaptotagmin-4, C2 domain second rep | 0.001 | |
| cd04037 | 124 | cd04037, C2E_Ferlin, C2 domain fifth repeat in Fer | 0.002 | |
| cd08688 | 110 | cd08688, C2_KIAA0528-like, C2 domain found in the | 0.002 | |
| cd04045 | 120 | cd04045, C2C_Tricalbin-like, C2 domain third repea | 0.002 | |
| cd04014 | 132 | cd04014, C2_PKC_epsilon, C2 domain in Protein Kina | 0.002 | |
| cd04014 | 132 | cd04014, C2_PKC_epsilon, C2 domain in Protein Kina | 0.002 | |
| cd04041 | 111 | cd04041, C2A_fungal, C2 domain first repeat; funga | 0.002 | |
| cd08409 | 137 | cd08409, C2B_Synaptotagmin-15, C2 domain second re | 0.002 | |
| cd04020 | 162 | cd04020, C2B_SLP_1-2-3-4, C2 domain second repeat | 0.002 | |
| COG5038 | 1227 | COG5038, COG5038, Ca2+-dependent lipid-binding pro | 0.003 | |
| cd04009 | 133 | cd04009, C2B_Munc13-like, C2 domain second repeat | 0.003 | |
| cd08402 | 136 | cd08402, C2B_Synaptotagmin-1, C2 domain second rep | 0.004 | |
| cd04018 | 151 | cd04018, C2C_Ferlin, C2 domain third repeat in Fer | 0.004 | |
| cd08393 | 125 | cd08393, C2A_SLP-1_2, C2 domain first repeat prese | 0.004 |
| >gnl|CDD|241373 cd13219, PH-GRAM_C2-GRAM, C2 and GRAM domain-containing protein Pleckstrin Homology-Glucosyltransferases, Rab-like GTPase activators and Myotubularins (PH-GRAM) domain | Back alignment and domain information |
|---|
Score = 212 bits (541), Expect = 8e-64
Identities = 94/161 (58%), Positives = 110/161 (68%), Gaps = 40/161 (24%)
Query: 670 TKMEKEVGKK---------------------------------------GRLFLSARIVG 690
+KMEKEVGKK GRLFLSARI+G
Sbjct: 1 SKMEKEVGKKINLRSPQKNSAFQKLFGLPPEEFLINDFTCALKRKFPLQGRLFLSARIIG 60
Query: 691 FYANLFGNKTKFFFLWEDIEDIQILSPSLATVGSPSLVIILWKGRGLDARHGAKSQDEEG 750
FY+NLFG+KTKFFFLWEDIE+IQ+ PSL +VGSPS+VIIL KGRGLDARHGAK QD EG
Sbjct: 61 FYSNLFGHKTKFFFLWEDIEEIQVSPPSL-SVGSPSIVIILRKGRGLDARHGAKPQDPEG 119
Query: 751 RLRFYFQSFVSFNDASRTIMALWRSRTLTAYQKEQIAEEQQ 791
RL+F+FQSFVSFN A RTIMALW++R+L+ QK+QI EE +
Sbjct: 120 RLKFHFQSFVSFNHAFRTIMALWKNRSLSPEQKKQIVEESE 160
|
C2GRAM contains two N-terminal C2 domains followed by a single PH-GRAM domain. Since it contains both of these domains it is assumed that this gene cross-links both calcium and phosphoinositide signaling pathways. In general he C2 domain is involved in binding phospholipids in a calcium dependent manner or calcium independent manner. The GRAM domain is found in glucosyltransferases, myotubularins and other putative membrane-associated proteins. The GRAM domain is part of a larger motif with a pleckstrin homology (PH) domain fold. Length = 161 |
| >gnl|CDD|175973 cd00030, C2, C2 domain | Back alignment and domain information |
|---|
Score = 85.6 bits (212), Expect = 5e-20
Identities = 34/109 (31%), Positives = 54/109 (49%), Gaps = 14/109 (12%)
Query: 6 LYVYVLQGQDLLAK------DSYVKVQIGKHKS-KSRILKNNSNPVWNEEFVFRVHNIDD 58
L V V++ ++L AK D YVKV +G + K++++KN NPVWNE F F V + +
Sbjct: 1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLDPES 60
Query: 59 EELVVSVFQHNDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSL 107
+ L V V+ + S + +G V +P+S + W L
Sbjct: 61 DTLTVEVWDKDR-----FSKDDFLGEVEIPLSELLDSGKEG--ELWLPL 102
|
The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 102 |
| >gnl|CDD|214577 smart00239, C2, Protein kinase C conserved region 2 (CalB) | Back alignment and domain information |
|---|
Score = 80.2 bits (198), Expect = 3e-18
Identities = 31/103 (30%), Positives = 50/103 (48%), Gaps = 14/103 (13%)
Query: 5 RLYVYVLQGQDLLAK------DSYVKVQIG---KHKSKSRILKNNSNPVWNEEFVFRVHN 55
L V ++ ++L K D YVKV + K K K++++KN NPVWNE F F V
Sbjct: 1 TLTVKIISARNLPPKDKGGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPP 60
Query: 56 IDDEELVVSVFQHNDDSGLFGSSGELMGRVRVPVSSIAAEDNH 98
+ EL + V+ + + +G+V +P+S + H
Sbjct: 61 PELAELEIEVYDKDRF-----GRDDFIGQVTIPLSDLLLGGRH 98
|
Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotagmins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles. Length = 101 |
| >gnl|CDD|215765 pfam00168, C2, C2 domain | Back alignment and domain information |
|---|
Score = 77.3 bits (191), Expect = 3e-17
Identities = 32/90 (35%), Positives = 45/90 (50%), Gaps = 14/90 (15%)
Query: 6 LYVYVLQGQDLLAKDS------YVKVQIG---KHKSKSRILKNNSNPVWNEEFVFRVHNI 56
L V V+ ++L KD YVKV +G K K++++KN NPVWNE F F V
Sbjct: 1 LRVTVISAKNLPPKDLNGKSDPYVKVSLGGQKKDTKKTKVVKNTLNPVWNETFTFEVTLP 60
Query: 57 DDEELVVSVFQHNDDSGLFGSSGELMGRVR 86
+ EL + V+ D FG + +G V
Sbjct: 61 ELAELRIEVY----DYDRFGKD-DFIGEVT 85
|
Length = 85 |
| >gnl|CDD|175986 cd04019, C2C_MCTP_PRT_plant, C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Score = 76.9 bits (190), Expect = 2e-16
Identities = 47/144 (32%), Positives = 70/144 (48%), Gaps = 24/144 (16%)
Query: 6 LYVYVLQGQDLLAKDS------YVKVQIGKHKSKSRILKN-NSNPVWNEEFVFRVHNIDD 58
L V V++ QDL+ D +VK Q+G ++R + N NP WNEE +F +
Sbjct: 2 LRVTVIEAQDLVPSDKNRVPEVFVKAQLGNQVLRTRPSQTRNGNPSWNEELMFVAAEPFE 61
Query: 59 EELVVSVFQHNDDSGLFGSSGELMGRVRVPVSSIAA-EDNHMLPPTWFSLETP------- 110
+ L++SV D G + E +GR +P++ I D+ +P WFSLE P
Sbjct: 62 DHLILSV---EDRVG--PNKDEPLGRAVIPLNDIERRVDDRPVPSRWFSLERPGGAMEQK 116
Query: 111 KTRKFTNKDCGKILLTISLNGKGH 134
K RKF +I L + L+G H
Sbjct: 117 KKRKF----ASRIHLRLCLDGGYH 136
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 150 |
| >gnl|CDD|175973 cd00030, C2, C2 domain | Back alignment and domain information |
|---|
Score = 74.0 bits (182), Expect = 6e-16
Identities = 33/103 (32%), Positives = 51/103 (49%), Gaps = 3/103 (2%)
Query: 538 LTVALVEGVNLASSEMTGLSDPYVVFTCNGK-TRTSSVQLQTCDPQWHDILEFDAMEEPP 596
L V ++E NL + ++ G SDPYV + GK + V T +P W++ EF ++
Sbjct: 1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLDPES 60
Query: 597 SVLDVEVFDFDGPFDQATSLGHAEIN-FLKHTSTELADMWVSL 638
L VEV+D D F + LG EI S + ++W+ L
Sbjct: 61 DTLTVEVWDKD-RFSKDDFLGEVEIPLSELLDSGKEGELWLPL 102
|
The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 102 |
| >gnl|CDD|175991 cd04025, C2B_RasA1_RasA4, C2 domain second repeat present in RasA1 and RasA4 | Back alignment and domain information |
|---|
Score = 67.5 bits (165), Expect = 2e-13
Identities = 28/70 (40%), Positives = 44/70 (62%)
Query: 538 LTVALVEGVNLASSEMTGLSDPYVVFTCNGKTRTSSVQLQTCDPQWHDILEFDAMEEPPS 597
L ++E +LA + G SDP+V NG+T +SV ++C P+W+++ EF+ ME S
Sbjct: 2 LRCHVLEARDLAPKDRNGTSDPFVRVFYNGQTLETSVVKKSCYPRWNEVFEFELMEGADS 61
Query: 598 VLDVEVFDFD 607
L VEV+D+D
Sbjct: 62 PLSVEVWDWD 71
|
RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 123 |
| >gnl|CDD|215765 pfam00168, C2, C2 domain | Back alignment and domain information |
|---|
Score = 63.4 bits (155), Expect = 2e-12
Identities = 24/86 (27%), Positives = 41/86 (47%), Gaps = 4/86 (4%)
Query: 538 LTVALVEGVNLASSEMTGLSDPYVVFTCNG---KTRTSSVQLQTCDPQWHDILEFDAMEE 594
L V ++ NL ++ G SDPYV + G T+ + V T +P W++ F+
Sbjct: 1 LRVTVISAKNLPPKDLNGKSDPYVKVSLGGQKKDTKKTKVVKNTLNPVWNETFTFEVTLP 60
Query: 595 PPSVLDVEVFDFDGPFDQATSLGHAE 620
+ L +EV+D+D F + +G
Sbjct: 61 ELAELRIEVYDYDR-FGKDDFIGEVT 85
|
Length = 85 |
| >gnl|CDD|176003 cd04038, C2_ArfGAP, C2 domain present in Arf GTPase Activating Proteins (GAP) | Back alignment and domain information |
|---|
Score = 65.4 bits (160), Expect = 2e-12
Identities = 32/87 (36%), Positives = 48/87 (55%), Gaps = 3/87 (3%)
Query: 537 VLTVALVEGVNLASSEMTGLSDPYVVFTCNGKTRTSSVQLQTCDPQWHDILEFDAMEEPP 596
+L V +V G NLA + T SDPYVV T + + V + +P W++ L ++ P
Sbjct: 3 LLKVRVVRGTNLAVRDFTS-SDPYVVLTLGNQKVKTRVIKKNLNPVWNEELTL-SVPNPM 60
Query: 597 SVLDVEVFDFDGPFDQATSLGHAEINF 623
+ L +EVFD D F + S+G AEI+
Sbjct: 61 APLKLEVFDKD-TFSKDDSMGEAEIDL 86
|
ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 145 |
| >gnl|CDD|214577 smart00239, C2, Protein kinase C conserved region 2 (CalB) | Back alignment and domain information |
|---|
Score = 61.3 bits (149), Expect = 2e-11
Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 4/90 (4%)
Query: 537 VLTVALVEGVNLASSEMTGLSDPYVVFTCNG---KTRTSSVQLQTCDPQWHDILEFDAME 593
LTV ++ NL + G SDPYV + +G + + + V T +P W++ EF+
Sbjct: 1 TLTVKIISARNLPPKDKGGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPP 60
Query: 594 EPPSVLDVEVFDFDGPFDQATSLGHAEINF 623
+ L++EV+D D F + +G I
Sbjct: 61 PELAELEIEVYDKDR-FGRDDFIGQVTIPL 89
|
Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotagmins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles. Length = 101 |
| >gnl|CDD|176037 cd08391, C2A_C2C_Synaptotagmin_like, C2 domain first and third repeat in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Score = 61.9 bits (151), Expect = 2e-11
Identities = 30/99 (30%), Positives = 51/99 (51%), Gaps = 18/99 (18%)
Query: 6 LYVYVLQGQDLLAKDS------------YVKVQIGKHKSKSRILKNNSNPVWNEEFVFRV 53
L ++V++ QDL+AKD YV V++G KS+++K N NP WNE + V
Sbjct: 3 LRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQTFKSKVIKENLNPKWNEVYEAVV 62
Query: 54 HNIDDEELVVSVFQHNDDSGLFGSSGELMGRVRVPVSSI 92
+ +EL + +F + D F +GR+ + + S+
Sbjct: 63 DEVPGQELEIELFDEDPDKDDF------LGRLSIDLGSV 95
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains either the first or third repeat in Synaptotagmin-like proteins with a type-I topology. Length = 121 |
| >gnl|CDD|175993 cd04027, C2B_Munc13, C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins | Back alignment and domain information |
|---|
Score = 61.8 bits (150), Expect = 2e-11
Identities = 36/116 (31%), Positives = 60/116 (51%), Gaps = 18/116 (15%)
Query: 5 RLYVYVLQGQDLLAKDS------YVKVQIGKHKSKSRILKNNSNPVWNEEFVFRVHNIDD 58
++ + V+ Q L+AKD YV VQ+GK K +++ + N NPVWNE+F F HN D
Sbjct: 2 KISITVVCAQGLIAKDKTGTSDPYVTVQVGKTKKRTKTIPQNLNPVWNEKFHFECHNSSD 61
Query: 59 EELVVSVFQHNDD------SGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLE 108
+ V V+ +DD S + +G+ + V +++ E + W++LE
Sbjct: 62 -RIKVRVWDEDDDIKSRLKQKFTRESDDFLGQTIIEVRTLSGEMD-----VWYNLE 111
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 127 |
| >gnl|CDD|175990 cd04024, C2A_Synaptotagmin-like, C2 domain first repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Score = 61.7 bits (150), Expect = 3e-11
Identities = 30/128 (23%), Positives = 52/128 (40%), Gaps = 9/128 (7%)
Query: 537 VLTVALVEGVNLASSEM--TGLSDPYVVFTCNGKTRTSSVQLQTCDPQWHDILEFDAMEE 594
VL V +VE +LA+ + G SDPY + + + + T +P+W+ EF
Sbjct: 2 VLRVHVVEAKDLAAKDRSGKGKSDPYAILSVGAQRFKTQTIPNTLNPKWNYWCEFPIFSA 61
Query: 595 PPSVLDVEVFDFDGPFDQATSLGHAEINF---LKHTSTELADMWVSLEGKLAQSAQSK-- 649
+L + ++D D F LG +I T +D W++L+
Sbjct: 62 QNQLLKLILWDKD-RFAGKDYLGEFDIALEEVFADGKTGQSDKWITLKSTRPGKTSVVSG 120
Query: 650 -VHLRIFL 656
+HL+
Sbjct: 121 EIHLQFSW 128
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 128 |
| >gnl|CDD|175989 cd04022, C2A_MCTP_PRT_plant, C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Score = 60.8 bits (148), Expect = 5e-11
Identities = 32/113 (28%), Positives = 51/113 (45%), Gaps = 15/113 (13%)
Query: 5 RLYVYVLQGQDLLAKD------SYVKVQIGKHKSKSRILKNNSNPVWNEEFVFRVH---N 55
+L V V+ QDL+ KD +YV++ K ++R + NPVWNE+ VF V
Sbjct: 1 KLVVEVVDAQDLMPKDGQGSSSAYVELDFDGQKKRTRTKPKDLNPVWNEKLVFNVSDPSR 60
Query: 56 IDDEELVVSVFQHNDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLE 108
+ + L V V+ G +GRVR+ +S ++ + LE
Sbjct: 61 LSNLVLEVYVYNDRR----SGRRRSFLGRVRISGTSFVPPSEAVV--QRYPLE 107
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 127 |
| >gnl|CDD|176064 cd08682, C2_Rab11-FIP_classI, C2 domain found in Rab11-family interacting proteins (FIP) class I | Back alignment and domain information |
|---|
Score = 60.2 bits (146), Expect = 7e-11
Identities = 38/133 (28%), Positives = 66/133 (49%), Gaps = 21/133 (15%)
Query: 8 VYVLQGQDLLAK------DSYVKVQIGKHKSKSRILKNNSNPVWNEEFVFR-----VHNI 56
V VLQ + LL K D+YV +Q+GK K + + + ++PVW EE F N
Sbjct: 3 VTVLQARGLLCKGKSGTNDAYVIIQLGKEKYSTSVKEKTTSPVWKEECSFELPGLLSGNG 62
Query: 57 DDEELVVSVFQHNDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPT-WFSLETPKTRKF 115
+ L ++V N L G + +G+V +P++ + +++ T WF LE+ +
Sbjct: 63 NRATLQLTVMHRN----LLGLD-KFLGQVSIPLNDL--DEDKGRRRTRWFKLESKPGKD- 114
Query: 116 TNKDCGKILLTIS 128
+K+ G+I + I
Sbjct: 115 -DKERGEIEVDIQ 126
|
Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The members in this CD are class I FIPs. The exact function of the Rab11 and FIP interaction is unknown, but there is speculation that it involves the role of forming a targeting complex that recruits a group of proteins involved in membrane transport to organelles. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 126 |
| >gnl|CDD|175978 cd04011, C2B_Ferlin, C2 domain second repeat in Ferlin | Back alignment and domain information |
|---|
Score = 58.7 bits (143), Expect = 2e-10
Identities = 29/109 (26%), Positives = 49/109 (44%), Gaps = 11/109 (10%)
Query: 8 VYVLQGQDL--LAKDSYVKVQIGKHKSKSRILKNNSNPVWNEEFVFRVHNID----DEEL 61
V V++ + L D VKV++G K + + K + P +NE F F H D+ +
Sbjct: 8 VRVIEARQLVGGNIDPVVKVEVGGQKKYTSVKKGTNCPFYNEYFFFNFHESPDELFDKII 67
Query: 62 VVSVFQHNDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETP 110
+SV+ DS S L+G ++ V ++ + +H W L P
Sbjct: 68 KISVY----DSRSLR-SDTLIGSFKLDVGTVYDQPDHAFLRKWLLLTDP 111
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 111 |
| >gnl|CDD|176022 cd08376, C2B_MCTP_PRT, C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Score = 58.4 bits (142), Expect = 2e-10
Identities = 32/103 (31%), Positives = 51/103 (49%), Gaps = 1/103 (0%)
Query: 537 VLTVALVEGVNLASSEMTGLSDPYVVFTCNGKTRTSSVQLQTCDPQWHDILEFDAMEEPP 596
V+T+ LVEG NL + GLSDPYV F + S V +T +PQW + + ++
Sbjct: 1 VVTIVLVEGKNLPPMDDNGLSDPYVKFRLGNEKYKSKVCSKTLNPQWLEQFDLHLFDDQS 60
Query: 597 SVLDVEVFDFDGPFDQATSLGHAEINFLKHTSTELADMWVSLE 639
+L++EV+D D +G EI+ + + + LE
Sbjct: 61 QILEIEVWDKDTGKKDE-FIGRCEIDLSALPREQTHSLELELE 102
|
MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 116 |
| >gnl|CDD|176022 cd08376, C2B_MCTP_PRT, C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Score = 58.4 bits (142), Expect = 2e-10
Identities = 32/128 (25%), Positives = 57/128 (44%), Gaps = 23/128 (17%)
Query: 10 VLQGQDLLAKDS------YVKVQIGKHKSKSRILKNNSNPVWNEEFVFRVHNIDDEELVV 63
+++G++L D YVK ++G K KS++ NP W E+F + + + L +
Sbjct: 6 LVEGKNLPPMDDNGLSDPYVKFRLGNEKYKSKVCSKTLNPQWLEQFDLHLFDDQSQILEI 65
Query: 64 SVFQHNDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTNKDCGKI 123
V+ + G E +GR + +S++ E H L LE + G +
Sbjct: 66 EVWDKD-----TGKKDEFIGRCEIDLSALPREQTHSL---ELELEDGE---------GSL 108
Query: 124 LLTISLNG 131
LL ++L G
Sbjct: 109 LLLLTLTG 116
|
MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 116 |
| >gnl|CDD|175975 cd00276, C2B_Synaptotagmin, C2 domain second repeat present in Synaptotagmin | Back alignment and domain information |
|---|
Score = 58.7 bits (143), Expect = 3e-10
Identities = 32/105 (30%), Positives = 48/105 (45%), Gaps = 14/105 (13%)
Query: 5 RLYVYVLQGQDL------LAKDSYVKVQIGKH-----KSKSRILKNNSNPVWNEEFVFRV 53
RL V VL+ ++L D YVKV + + K K+ + K NPV+NE F F V
Sbjct: 15 RLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDV 74
Query: 54 HNIDDEELVVSVFQHNDDSGLFGSSGELMGRVRVPVSSIAAEDNH 98
EE+ + + + DS E++G+V + S E H
Sbjct: 75 PAEQLEEVSLVITVVDKDS---VGRNEVIGQVVLGPDSGGEELEH 116
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 134 |
| >gnl|CDD|176015 cd04050, C2B_Synaptotagmin-like, C2 domain second repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Score = 57.2 bits (139), Expect = 6e-10
Identities = 32/109 (29%), Positives = 57/109 (52%), Gaps = 15/109 (13%)
Query: 6 LYVYVLQGQDL-LAK-----DSYVKVQIGKHKSKSRILKNNSNPVWNEEFVFRVHNIDDE 59
L+VY+ ++L LAK YV++ +GK KS++ + +NPVW E F F V N +++
Sbjct: 2 LFVYLDSAKNLPLAKSTKEPSPYVELTVGKTTQKSKVKERTNNPVWEEGFTFLVRNPENQ 61
Query: 60 ELVVSVFQHNDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLE 108
EL + V +G+ +G + +P+S + E + + F L+
Sbjct: 62 ELEIEVKDDK--------TGKSLGSLTLPLSELLKEPD-LTLDQPFPLD 101
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 105 |
| >gnl|CDD|176021 cd08375, C2_Intersectin, C2 domain present in Intersectin | Back alignment and domain information |
|---|
Score = 55.1 bits (133), Expect = 6e-09
Identities = 28/98 (28%), Positives = 50/98 (51%), Gaps = 11/98 (11%)
Query: 5 RLYVYVLQGQDLLA------KDSYVKVQIGKHKSKSRILKNNSNPVWNEEFVFRVHNIDD 58
RL V +++G+DL D Y +V +G + K++++ + NP WN F V +++
Sbjct: 16 RLMVVIVEGRDLKPCNSNGKSDPYCEVSMGSQEHKTKVVSDTLNPKWNSSMQFFVKDLEQ 75
Query: 59 EELVVSVFQHNDDSGLFGSSGELMGRVRVPVSSIAAED 96
+ L ++VF D F S + +GR + V+ I E
Sbjct: 76 DVLCITVF----DRDFF-SPDDFLGRTEIRVADILKET 108
|
A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. The members here have topology I. Length = 136 |
| >gnl|CDD|175984 cd04017, C2D_Ferlin, C2 domain fourth repeat in Ferlin | Back alignment and domain information |
|---|
Score = 54.5 bits (132), Expect = 1e-08
Identities = 26/141 (18%), Positives = 52/141 (36%), Gaps = 27/141 (19%)
Query: 5 RLYVYVLQGQDLLAKDS------YVKVQIGKHKSKSRILKNNSNPVWNEEFVFRVHNIDD 58
+L Y+ Q +DLLA D + +V ++ ++K +P W++ +F +
Sbjct: 2 QLRAYIYQARDLLAADKSGLSDPFARVSFLNQSQETEVIKETLSPTWDQTLIFDEVELYG 61
Query: 59 E---------ELVVSVFQHNDDSGLFGSSGELMGRVR-VPVSSIAAEDNHMLPPTWFSLE 108
+VV +F + E +GR P+ + E++ WF +
Sbjct: 62 SPEEIAQNPPLVVVELFDQD-----SVGKDEFLGRSVAKPLVKLDLEEDFPPKLQWFPI- 115
Query: 109 TPKTRKFTNKDCGKILLTISL 129
+ G++L L
Sbjct: 116 -----YKGGQSAGELLAAFEL 131
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fourth C2 repeat, C2D, and has a type-II topology. Length = 135 |
| >gnl|CDD|176007 cd04042, C2A_MCTP_PRT, C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Score = 53.0 bits (128), Expect = 2e-08
Identities = 32/97 (32%), Positives = 48/97 (49%), Gaps = 10/97 (10%)
Query: 538 LTVALVEGVNLASSEMTGLSDPYVVFTCNGKT-RTSSVQLQTCDPQWHD--ILEFDAMEE 594
L + L EG NLA+ + G SDPYV F GKT S + +P W + L + + +
Sbjct: 2 LDIHLKEGRNLAARDRGGTSDPYVKFKYGGKTVYKSKTIYKNLNPVWDEKFTLPIEDVTQ 61
Query: 595 PPSVLDVEVFDFDGPFDQATSLGHAEINFLKHTSTEL 631
P L ++VFD+D +G A F+ ++ EL
Sbjct: 62 P---LYIKVFDYDRGL-TDDFMGSA---FVDLSTLEL 91
|
MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 121 |
| >gnl|CDD|176007 cd04042, C2A_MCTP_PRT, C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Score = 51.9 bits (125), Expect = 5e-08
Identities = 37/137 (27%), Positives = 67/137 (48%), Gaps = 30/137 (21%)
Query: 5 RLYVYVLQGQDLLAKDS------YVKVQI-GKHKSKSRILKNNSNPVWNEEFVFRVHNID 57
+L +++ +G++L A+D YVK + GK KS+ + N NPVW+E+F I+
Sbjct: 1 QLDIHLKEGRNLAARDRGGTSDPYVKFKYGGKTVYKSKTIYKNLNPVWDEKFTL---PIE 57
Query: 58 D--EELVVSVFQHNDDSGLFGSSGELMGRVRVPVSSIA---AEDNHMLPPTWFSLETPKT 112
D + L + VF ++ G + + MG V +S++ + + LE P
Sbjct: 58 DVTQPLYIKVFDYD-----RGLTDDFMGSAFVDLSTLELNKPTEVKL------KLEDPN- 105
Query: 113 RKFTNKDCGKILLTISL 129
+++D G I L ++L
Sbjct: 106 ---SDEDLGYISLVVTL 119
|
MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 121 |
| >gnl|CDD|176003 cd04038, C2_ArfGAP, C2 domain present in Arf GTPase Activating Proteins (GAP) | Back alignment and domain information |
|---|
Score = 52.3 bits (126), Expect = 7e-08
Identities = 29/76 (38%), Positives = 40/76 (52%), Gaps = 10/76 (13%)
Query: 6 LYVYVLQG-----QDLLAKDSYVKVQIGKHKSKSRILKNNSNPVWNEEFVFRVHNIDDEE 60
L V V++G +D + D YV + +G K K+R++K N NPVWNEE V N
Sbjct: 4 LKVRVVRGTNLAVRDFTSSDPYVVLTLGNQKVKTRVIKKNLNPVWNEELTLSVPNPMA-P 62
Query: 61 LVVSVFQHN----DDS 72
L + VF + DDS
Sbjct: 63 LKLEVFDKDTFSKDDS 78
|
ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 145 |
| >gnl|CDD|176005 cd04040, C2D_Tricalbin-like, C2 domain fourth repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Score = 51.4 bits (124), Expect = 7e-08
Identities = 34/91 (37%), Positives = 48/91 (52%), Gaps = 12/91 (13%)
Query: 538 LTVALVEGVNLASSEMTGLSDPYVVFTCNG----KTRTSSVQLQTCDPQWHDILEFDAME 593
LTV ++ NL S++ G SDP+V F NG KT+T +T +P W++ E
Sbjct: 1 LTVDVISAENLPSADRNGKSDPFVKFYLNGEKVFKTKT---IKKTLNPVWNESFEVPVPS 57
Query: 594 EPPSVLDVEVFDFD--GPFDQATSLGHAEIN 622
+VL VEV+D+D G D LG A I+
Sbjct: 58 RVRAVLKVEVYDWDRGGKDD---LLGSAYID 85
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fifth C2 repeat, C2E, and has a type-II topology. Length = 115 |
| >gnl|CDD|176037 cd08391, C2A_C2C_Synaptotagmin_like, C2 domain first and third repeat in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Score = 51.5 bits (124), Expect = 8e-08
Identities = 33/122 (27%), Positives = 56/122 (45%), Gaps = 10/122 (8%)
Query: 537 VLTVALVEGVNLASSEM------TGLSDPYVVFTCNGKTRTSSVQLQTCDPQWHDILEFD 590
VL + ++E +L + + G SDPYV+ +T S V + +P+W+++ E
Sbjct: 2 VLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQTFKSKVIKENLNPKWNEVYEAV 61
Query: 591 AMEEPPSVLDVEVFDFDGPFDQATSLGHAEINFLKHTSTELADMWVSLEGKLAQSAQSKV 650
E P L++E+FD D D+ LG I+ D W+ LE +S + +
Sbjct: 62 VDEVPGQELEIELFDEDP--DKDDFLGRLSIDLGSVEKKGFIDEWLPLED--VKSGRLHL 117
Query: 651 HL 652
L
Sbjct: 118 KL 119
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains either the first or third repeat in Synaptotagmin-like proteins with a type-I topology. Length = 121 |
| >gnl|CDD|176023 cd08377, C2C_MCTP_PRT, C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Score = 51.1 bits (123), Expect = 8e-08
Identities = 32/130 (24%), Positives = 59/130 (45%), Gaps = 20/130 (15%)
Query: 6 LYVYVLQGQDLLAKD------SYVKVQIGKHKSKSRILKNNSNPVWNEEFVFRVHNIDDE 59
L V V++ L A D + +++ + ++ + NP WN+ F F + +I D
Sbjct: 3 LQVKVIRASGLAAADIGGKSDPFCVLELVNARLQTHTIYKTLNPEWNKIFTFPIKDIHD- 61
Query: 60 ELVVSVFQHNDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTNKD 119
L V+V+ + D E +G+V +P+ SI + W++L K +K +
Sbjct: 62 VLEVTVYDEDKD-----KKPEFLGKVAIPLLSIKNGERK-----WYAL---KDKKLRTRA 108
Query: 120 CGKILLTISL 129
G ILL + +
Sbjct: 109 KGSILLEMDV 118
|
MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 119 |
| >gnl|CDD|176005 cd04040, C2D_Tricalbin-like, C2 domain fourth repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Score = 49.9 bits (120), Expect = 2e-07
Identities = 25/94 (26%), Positives = 43/94 (45%), Gaps = 12/94 (12%)
Query: 6 LYVYVLQGQDLLAKDS------YVKVQI-GKHKSKSRILKNNSNPVWNEEFVFRVHNIDD 58
L V V+ ++L + D +VK + G+ K++ +K NPVWNE F V +
Sbjct: 1 LTVDVISAENLPSADRNGKSDPFVKFYLNGEKVFKTKTIKKTLNPVWNESFEVPVPSRVR 60
Query: 59 EELVVSVFQHNDDSGLFGSSGELMGRVRVPVSSI 92
L V V+ + G +L+G + +S +
Sbjct: 61 AVLKVEVYDWD-----RGGKDDLLGSAYIDLSDL 89
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fifth C2 repeat, C2E, and has a type-II topology. Length = 115 |
| >gnl|CDD|176001 cd04036, C2_cPLA2, C2 domain present in cytosolic PhosphoLipase A2 (cPLA2) | Back alignment and domain information |
|---|
Score = 50.3 bits (121), Expect = 2e-07
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 9/59 (15%)
Query: 5 RLYVYVLQGQDLLAK------DSYVKVQI---GKHKSKSRILKNNSNPVWNEEFVFRVH 54
L V VL+ ++ D YV++ + K +++ +KN+ NPVWNE F FR+
Sbjct: 1 LLTVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRIQ 59
|
A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members of this cd have a type-II topology. Length = 119 |
| >gnl|CDD|176050 cd08405, C2B_Synaptotagmin-7, C2 domain second repeat present in Synaptotagmin 7 | Back alignment and domain information |
|---|
Score = 50.5 bits (121), Expect = 2e-07
Identities = 29/107 (27%), Positives = 51/107 (47%), Gaps = 18/107 (16%)
Query: 5 RLYVYVLQGQDLLAKD------SYVKVQI---GK--HKSKSRILKNNSNPVWNEEFVFRV 53
R+ V +++ ++L A D YVKV + K K K+ I K NPV+NE F+F +
Sbjct: 16 RITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIFNI 75
Query: 54 --HNIDDEELVVSVFQHNDDSGLFGSSGELMGRVRVPVSSIAAEDNH 98
+ + L+++V + S +L+G++ + S E H
Sbjct: 76 PLERLRETTLIITVMDKDRL-----SRNDLIGKIYLGWKSGGLELKH 117
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136 |
| >gnl|CDD|175982 cd04015, C2_plant_PLD, C2 domain present in plant phospholipase D (PLD) | Back alignment and domain information |
|---|
Score = 50.8 bits (122), Expect = 3e-07
Identities = 21/80 (26%), Positives = 43/80 (53%), Gaps = 10/80 (12%)
Query: 17 LAKDSYVKVQIGKHK-SKSRILKNNSNPVWNEEF-VFRVHNIDDEELVVSVFQHNDDSGL 74
+ D Y V + + +++R+++N+ NPVWNE F ++ H + +V D+ +
Sbjct: 56 ITSDPYATVDLAGARVARTRVIENSENPVWNESFHIYCAHYASH--VEFTV----KDNDV 109
Query: 75 FGSSGELMGRVRVPVSSIAA 94
G+ +L+GR +PV + +
Sbjct: 110 VGA--QLIGRAYIPVEDLLS 127
|
PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 158 |
| >gnl|CDD|176023 cd08377, C2C_MCTP_PRT, C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Score = 49.6 bits (119), Expect = 4e-07
Identities = 23/75 (30%), Positives = 44/75 (58%), Gaps = 4/75 (5%)
Query: 535 GWVLTVALVEGVNLASSEMTGLSDPYVVFT-CNGKTRTSSVQLQTCDPQWHDILEFDAME 593
G+ L V ++ LA++++ G SDP+ V N + +T ++ +T +P+W+ I F ++
Sbjct: 1 GF-LQVKVIRASGLAAADIGGKSDPFCVLELVNARLQTHTIY-KTLNPEWNKIFTF-PIK 57
Query: 594 EPPSVLDVEVFDFDG 608
+ VL+V V+D D
Sbjct: 58 DIHDVLEVTVYDEDK 72
|
MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 119 |
| >gnl|CDD|176024 cd08378, C2B_MCTP_PRT_plant, C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 5e-07
Identities = 31/108 (28%), Positives = 51/108 (47%), Gaps = 10/108 (9%)
Query: 5 RLYVYVLQGQDLLAK--DSYVKVQIGKHKSKSRILKNNSNPVWNEEFVFRVHNIDDEELV 62
LYV V++ + L A D V+V++G +K ++ ++ SNP WN+ F F + L
Sbjct: 1 YLYVRVVKARGLPANSNDPVVEVKLGNYKGSTKAIERTSNPEWNQVFAFSKDRLQGSTLE 60
Query: 63 VSVFQHNDDSGLFGSSGELMGRVRVPVSSIAAED--NHMLPPTWFSLE 108
VSV + D + +G V +S + + L P W+ LE
Sbjct: 61 VSV--WDKDKA----KDDFLGGVCFDLSEVPTRVPPDSPLAPQWYRLE 102
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 121 |
| >gnl|CDD|175996 cd04030, C2C_KIAA1228, C2 domain third repeat present in uncharacterized human KIAA1228-like proteins | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 6e-07
Identities = 29/117 (24%), Positives = 52/117 (44%), Gaps = 19/117 (16%)
Query: 5 RLYVYVLQGQDLLAK------DSYVKVQI--GKHKS---KSRILKNNSNPVWNE--EFVF 51
+L V V + ++L D YV++ + K KS K+ + K+N NPV++E EF
Sbjct: 17 KLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFPV 76
Query: 52 RVHNIDDEELVVSVFQHNDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLE 108
+ + L V+V + +L+G+V + +S + D W+ L
Sbjct: 77 SLEELKRRTLDVAV---KNSKSFLSREKKLLGQVLIDLSDL---DLSKGFTQWYDLT 127
|
KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 127 |
| >gnl|CDD|176032 cd08386, C2A_Synaptotagmin-7, C2A domain first repeat present in Synaptotagmin 7 | Back alignment and domain information |
|---|
Score = 48.9 bits (117), Expect = 7e-07
Identities = 27/102 (26%), Positives = 48/102 (47%), Gaps = 17/102 (16%)
Query: 3 STRLYVYVLQGQDLLAK------DSYVKV---QIGKHKSKSRILKNNSNPVWNEEFVFRV 53
+ L + +L+ +L AK D +VK+ KHK ++++ + N NP WNE F+F
Sbjct: 15 ESTLTLKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEG 74
Query: 54 HNID---DEELVVSVFQHNDDSGLFGSSGELMGRVRVPVSSI 92
+ L + V D F S + +G V +P++ +
Sbjct: 75 FPYEKLQQRVLYLQVL----DYDRF-SRNDPIGEVSLPLNKV 111
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 125 |
| >gnl|CDD|175990 cd04024, C2A_Synaptotagmin-like, C2 domain first repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Score = 48.2 bits (115), Expect = 1e-06
Identities = 28/132 (21%), Positives = 59/132 (44%), Gaps = 14/132 (10%)
Query: 6 LYVYVLQGQDLLAKD--------SYVKVQIGKHKSKSRILKNNSNPVWNEEFVFRVHNID 57
L V+V++ +DL AKD Y + +G + K++ + N NP WN F + +
Sbjct: 3 LRVHVVEAKDLAAKDRSGKGKSDPYAILSVGAQRFKTQTIPNTLNPKWNYWCEFPIFSAQ 62
Query: 58 DEELVVSVFQHNDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTN 117
++ L + ++ + +G + +G + + + A+ W +L++ + K +
Sbjct: 63 NQLLKLILWDKDRFAG-----KDYLGEFDIALEEVFADGKTGQSDKWITLKSTRPGKTSV 117
Query: 118 KDCGKILLTISL 129
G+I L S
Sbjct: 118 VS-GEIHLQFSW 128
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 128 |
| >gnl|CDD|175992 cd04026, C2_PKC_alpha_gamma, C2 domain in Protein Kinase C (PKC) alpha and gamma | Back alignment and domain information |
|---|
Score = 48.0 bits (115), Expect = 1e-06
Identities = 33/128 (25%), Positives = 57/128 (44%), Gaps = 27/128 (21%)
Query: 5 RLYVYVLQGQDL-------LAKDSYVKVQI-----GKHKSKSRILKNNSNPVWNEEFVFR 52
+L V V + ++L L+ D YVK+++ + K K++ +K NPVWNE F F
Sbjct: 14 KLTVEVREAKNLIPMDPNGLS-DPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFD 72
Query: 53 VHNID-DEELVVSVFQHNDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPT--WFSLET 109
+ D D L + V+ D + + MG + VS + + P W+ L
Sbjct: 73 LKPADKDRRLSIEVW----DWDRT-TRNDFMGSLSFGVSEL------IKMPVDGWYKLLN 121
Query: 110 PKTRKFTN 117
+ ++ N
Sbjct: 122 QEEGEYYN 129
|
A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 131 |
| >gnl|CDD|176025 cd08379, C2D_MCTP_PRT_plant, C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Score = 47.8 bits (114), Expect = 2e-06
Identities = 20/74 (27%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
Query: 20 DSYVKVQIGKHKSKSRILKNNSNPVWNEEFVFRVHNIDDEELVVSVFQHNDDSGLFGS-S 78
D+Y + G ++R ++++SNP WNE++ + V++ L V VF ++
Sbjct: 25 DAYCVAKYGPKWVRTRTVEDSSNPRWNEQYTWPVYDP-CTVLTVGVFDNSQSHWKEAVQP 83
Query: 79 GELMGRVRVPVSSI 92
L+G+VR+ +S++
Sbjct: 84 DVLIGKVRIRLSTL 97
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fourth C2 repeat, C2D, and has a type-II topology. Length = 126 |
| >gnl|CDD|176047 cd08402, C2B_Synaptotagmin-1, C2 domain second repeat present in Synaptotagmin 1 | Back alignment and domain information |
|---|
Score = 47.8 bits (114), Expect = 2e-06
Identities = 28/86 (32%), Positives = 41/86 (47%), Gaps = 12/86 (13%)
Query: 20 DSYVKVQI---GKH--KSKSRILKNNSNPVWNEEFVFRV--HNIDDEELVVSVFQHNDDS 72
D YVK+ + GK K K+ I K NP +NE F F V I L+V+V + D
Sbjct: 37 DPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFEVPFEQIQKVHLIVTVLDY-DRI 95
Query: 73 GLFGSSGELMGRVRVPVSSIAAEDNH 98
G + +G+V + ++ AE H
Sbjct: 96 G----KNDPIGKVVLGCNATGAELRH 117
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136 |
| >gnl|CDD|175974 cd00275, C2_PLC_like, C2 domain present in Phosphoinositide-specific phospholipases C (PLC) | Back alignment and domain information |
|---|
Score = 47.5 bits (114), Expect = 2e-06
Identities = 28/81 (34%), Positives = 43/81 (53%), Gaps = 15/81 (18%)
Query: 20 DSYVKVQI------GKHKSKSRILKNNS-NPVWNEEFVFRVHNIDDEELVVSVFQ-HNDD 71
D YV+V+I K K++++KNN NPVWNE F F V EL F +++D
Sbjct: 26 DPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTV---PELAFLRFVVYDED 82
Query: 72 SGLFGSSGELMGRVRVPVSSI 92
SG + +G+ +P+ S+
Sbjct: 83 SG----DDDFLGQACLPLDSL 99
|
PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-II topology. Length = 128 |
| >gnl|CDD|176031 cd08385, C2A_Synaptotagmin-1-5-6-9-10, C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10 | Back alignment and domain information |
|---|
Score = 47.6 bits (114), Expect = 2e-06
Identities = 33/98 (33%), Positives = 53/98 (54%), Gaps = 16/98 (16%)
Query: 6 LYVYVLQGQDLLAKDS------YVKVQI---GKHKSKSRILKNNSNPVWNEEFVFRV--H 54
L V ++Q DL A D YVKV + K K ++++ + NPV+NE F F+V
Sbjct: 18 LTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFTFKVPYS 77
Query: 55 NIDDEELVVSVFQHNDDSGLFGSSGELMGRVRVPVSSI 92
+ ++ LV SV+ + F S +L+G VRVP+ ++
Sbjct: 78 ELGNKTLVFSVYDFDR----F-SKHDLIGEVRVPLLTV 110
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 124 |
| >gnl|CDD|176014 cd04049, C2_putative_Elicitor-responsive_gene, C2 domain present in the putative elicitor-responsive gene | Back alignment and domain information |
|---|
Score = 47.3 bits (113), Expect = 2e-06
Identities = 27/98 (27%), Positives = 42/98 (42%), Gaps = 12/98 (12%)
Query: 11 LQGQDLLAK-DSYVKVQIGKHKSKSRILKN-NSNPVWNEEFVFRVHNID---DEELVVSV 65
LQ D L K D YV +Q + KS++ K NP WNE+F F V D +L++ +
Sbjct: 13 LQDTDFLGKIDPYVIIQCRTQERKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRI 72
Query: 66 FQHNDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPT 103
+ S + +G + + + E P T
Sbjct: 73 MDKD-----NFSDDDFIGEATIHLKGLFEEGV--EPGT 103
|
In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members have a type-II topology. Length = 124 |
| >gnl|CDD|175997 cd04031, C2A_RIM1alpha, C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 4e-06
Identities = 34/120 (28%), Positives = 56/120 (46%), Gaps = 27/120 (22%)
Query: 5 RLYVYVLQGQDLLAKDS------YVKVQI-----GKHKSKSRILKNNSNPVWNEEFVFRV 53
+L V VLQ +DL +D YVKV + K K +++ +K NP WN+ F +
Sbjct: 17 QLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYS- 75
Query: 54 HNIDDEELV-----VSVFQHNDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLE 108
N+ E L V+V+ D G + + +G V + ++ A D+ P W+ L+
Sbjct: 76 -NVRRETLKERTLEVTVW----DYDRDGEN-DFLGEVVIDLAD-ALLDDE---PHWYPLQ 125
|
RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology and do not bind Ca2+. Length = 125 |
| >gnl|CDD|175999 cd04033, C2_NEDD4_NEDD4L, C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42) | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 5e-06
Identities = 35/109 (32%), Positives = 47/109 (43%), Gaps = 27/109 (24%)
Query: 6 LYVYVLQGQDLLAKD------SYVKVQIGKHKSKSRI-------LKNNSNPVWNEEFVFR 52
L V VL G DL KD YVK+ + I +K NP WNEEF FR
Sbjct: 2 LRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFR 61
Query: 53 VHNIDDEELVVSVFQHN----DDSGLFGSSGELMGRVRVPVSSIAAEDN 97
V+ + L+ VF N DD +G+V VP++++ E
Sbjct: 62 VNPR-EHRLLFEVFDENRLTRDD---------FLGQVEVPLNNLPTETP 100
|
Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 133 |
| >gnl|CDD|176048 cd08403, C2B_Synaptotagmin-3-5-6-9-10, C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10 | Back alignment and domain information |
|---|
Score = 46.3 bits (110), Expect = 6e-06
Identities = 32/96 (33%), Positives = 50/96 (52%), Gaps = 18/96 (18%)
Query: 5 RLYVYVLQGQDLLAK------DSYVKVQI---GKH--KSKSRILKNNSNPVWNEEFVFRV 53
RL + +++ ++L A D YVKV + G+ K K+ + KN NP +NE VF V
Sbjct: 15 RLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFDV 74
Query: 54 --HNIDDEELVVSVFQHNDDSGLFGSSGELMGRVRV 87
N+D+ L+++V + D G EL+G RV
Sbjct: 75 PPENVDNVSLIIAVVDY-DRVG----HNELIGVCRV 105
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 134 |
| >gnl|CDD|176009 cd04044, C2A_Tricalbin-like, C2 domain first repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Score = 45.2 bits (108), Expect = 1e-05
Identities = 26/92 (28%), Positives = 42/92 (45%), Gaps = 10/92 (10%)
Query: 11 LQGQDLLAK--DSYVKVQIGKHKS--KSRILKNNSNPVWNEEFVFRVHNIDDEELVVSVF 66
L+G D++ D YV I + ++++ K+ SNPVWNE V N E L ++V+
Sbjct: 14 LKGSDIIGGTVDPYVTFSISNRRELARTKVKKDTSNPVWNETKYILV-NSLTEPLNLTVY 72
Query: 67 QHNDDSGLFGSSGELMGRVRVPVSSIAAEDNH 98
ND +L+G +SS+
Sbjct: 73 DFNDK-----RKDKLIGTAEFDLSSLLQNPEQ 99
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 124 |
| >gnl|CDD|176002 cd04037, C2E_Ferlin, C2 domain fifth repeat in Ferlin | Back alignment and domain information |
|---|
Score = 45.2 bits (108), Expect = 1e-05
Identities = 22/85 (25%), Positives = 40/85 (47%), Gaps = 13/85 (15%)
Query: 8 VYVLQGQDLLAK------DSYVKVQIGKHK--SKSRILKNNSNPVWNEEFVFRVHNIDDE 59
VYV++ ++L K D Y+K+++GK K + + N NPV+ + F +
Sbjct: 4 VYVVRARNLQPKDPNGKSDPYLKIKLGKKKINDRDNYIPNTLNPVFGKMFELEATLPGNS 63
Query: 60 ELVVSVFQHNDDSGLFGSSGELMGR 84
L +SV ++ S +L+G
Sbjct: 64 ILKISVMDYD-----LLGSDDLIGE 83
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fifth C2 repeat, C2E, and has a type-II topology. Length = 124 |
| >gnl|CDD|176030 cd08384, C2B_Rabphilin_Doc2, C2 domain second repeat present in Rabphilin and Double C2 domain | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 1e-05
Identities = 25/124 (20%), Positives = 55/124 (44%), Gaps = 23/124 (18%)
Query: 6 LYVYVLQGQDLLAKDS------YVKVQI-----GKHKSKSRILKNNSNPVWNEEFVFRV- 53
L V +++ +L A D+ +VK+ + K K K+++ K NP +NEEF + +
Sbjct: 15 LIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYDIK 74
Query: 54 -HNIDDEELVVSVFQHNDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKT 112
++ + L ++V+ + G S + +G +++ +++ H W
Sbjct: 75 HSDLAKKTLEITVWDKD-----IGKSNDYIGGLQLGINAKGERLRH-----WLDCLKNPD 124
Query: 113 RKFT 116
+K
Sbjct: 125 KKIE 128
|
Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 133 |
| >gnl|CDD|217271 pfam02893, GRAM, GRAM domain | Back alignment and domain information |
|---|
Score = 43.0 bits (102), Expect = 2e-05
Identities = 11/39 (28%), Positives = 20/39 (51%)
Query: 678 KKGRLFLSARIVGFYANLFGNKTKFFFLWEDIEDIQILS 716
+GRL+L+ + F ++ FG+ T DIE ++
Sbjct: 22 VQGRLYLTNNRLCFRSDKFGDLTVLVIPLADIERVEKEK 60
|
The GRAM domain is found in in glucosyltransferases, myotubularins and other putative membrane-associated proteins. Length = 60 |
| >gnl|CDD|176000 cd04035, C2A_Rabphilin_Doc2, C2 domain first repeat present in Rabphilin and Double C2 domain | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 2e-05
Identities = 23/102 (22%), Positives = 49/102 (48%), Gaps = 24/102 (23%)
Query: 5 RLYVYVLQGQDLLAKDS------YVKVQI--GKHKS---KSRILKNNSNPVWNEEFVFRV 53
L+ +++ + L A D+ YVK+ + G K+ +++ + NP +NE +
Sbjct: 16 ALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTY-- 73
Query: 54 HNIDDEE-----LVVSVFQHNDDSGLFGSSGELMGRVRVPVS 90
+ I +E+ L + V ++D FG+ + +G R+P+
Sbjct: 74 YGITEEDIQRKTLRLLVL--DEDR--FGN--DFLGETRIPLK 109
|
Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 123 |
| >gnl|CDD|176057 cd08675, C2B_RasGAP, C2 domain second repeat of Ras GTPase activating proteins (GAPs) | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 2e-05
Identities = 25/117 (21%), Positives = 50/117 (42%), Gaps = 29/117 (24%)
Query: 6 LYVYVLQGQDLLAK-----DSYVKVQIGKHK----SKSRILKNNSNPVWNEEFVFRVH-- 54
L V VL+ +DL K D + +V + ++++ K +NP ++E F F +
Sbjct: 1 LSVRVLECRDLALKSNGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTIG 60
Query: 55 -------------NIDDEELVVSVFQHNDDSGLFGSSGELMGRVRVPVSSIAAEDNH 98
+++ EL V ++ S + G + +G VR+P+ + +H
Sbjct: 61 FSYEKKSFKVEEEDLEKSELRVELW---HASMVSGD--DFLGEVRIPLQGLQQAGSH 112
|
RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 137 |
| >gnl|CDD|175984 cd04017, C2D_Ferlin, C2 domain fourth repeat in Ferlin | Back alignment and domain information |
|---|
Score = 44.5 bits (106), Expect = 3e-05
Identities = 23/74 (31%), Positives = 34/74 (45%), Gaps = 17/74 (22%)
Query: 547 NLASSEMTGLSDPY--VVFTCNGK-TRTSSVQLQTCDPQWHDILEFDA----------ME 593
+L +++ +GLSDP+ V F + T +T P W L FD +
Sbjct: 12 DLLAADKSGLSDPFARVSFLNQSQETEVIK---ETLSPTWDQTLIFDEVELYGSPEEIAQ 68
Query: 594 EPPSVLDVEVFDFD 607
PP V+ VE+FD D
Sbjct: 69 NPPLVV-VELFDQD 81
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fourth C2 repeat, C2D, and has a type-II topology. Length = 135 |
| >gnl|CDD|176048 cd08403, C2B_Synaptotagmin-3-5-6-9-10, C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10 | Back alignment and domain information |
|---|
Score = 44.4 bits (105), Expect = 3e-05
Identities = 30/94 (31%), Positives = 49/94 (52%), Gaps = 20/94 (21%)
Query: 538 LTVALVEGVNLASSEMTGLSDPYV--VFTCNG---KTRTSSVQLQTCDPQWHDILEFDAM 592
LT+ +++ NL + ++TG SDPYV C G K + +SV+ T +P +++ L FD
Sbjct: 16 LTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFDV- 74
Query: 593 EEPPSVLD-----VEVFDFDGPFDQATSLGHAEI 621
PP +D + V D+D +GH E+
Sbjct: 75 --PPENVDNVSLIIAVVDYD-------RVGHNEL 99
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 134 |
| >gnl|CDD|176008 cd04043, C2_Munc13_fungal, C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 4e-05
Identities = 30/137 (21%), Positives = 60/137 (43%), Gaps = 27/137 (19%)
Query: 7 YVY---VLQGQDLLAK------DSYVKV--QIGKHK-SKSRILKNNSNPVWNEEFVFRVH 54
+++ +++ ++L A D YV + GK + +K+R + + NP W+EEF V
Sbjct: 1 HLFTIRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEVP 60
Query: 55 NIDDEELVVSVFQHNDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRK 114
+ + +V+ + F +L GR + + D+ + W L+T
Sbjct: 61 AGEPLWISATVWDRS-----FVGKHDLCGRASLKLDPKRFGDDGLPREIWLDLDTQ---- 111
Query: 115 FTNKDCGKILLTISLNG 131
G++LL +S+ G
Sbjct: 112 ------GRLLLRVSMEG 122
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 126 |
| >gnl|CDD|227371 COG5038, COG5038, Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 47.4 bits (113), Expect = 4e-05
Identities = 39/122 (31%), Positives = 58/122 (47%), Gaps = 14/122 (11%)
Query: 538 LTVALVEGVNLASSEMTGLSDPYVVFTCNGKT-RTSSVQLQTCDPQWHDILEFDAMEEPP 596
LT+ L G NL SS+ G SDP+V N K+ + V +T +P W++ EF +E
Sbjct: 1042 LTIMLRSGENLPSSDENGYSDPFVKLFLNEKSVYKTKVVKKTLNPVWNE--EFT-IEVLN 1098
Query: 597 SVLDV---EVFDFDGPFDQAT-SLGHAEI--NFLKHTSTELADMWVSLEGKLAQSAQSKV 650
V DV V D+D + LG AEI + L+ T ++ + L+GK +
Sbjct: 1099 RVKDVLTINVNDWD--SGEKNDLLGTAEIDLSKLEPGGTTNSN--IPLDGKTFIVLDGTL 1154
Query: 651 HL 652
H
Sbjct: 1155 HP 1156
|
Length = 1227 |
| >gnl|CDD|176016 cd04051, C2_SRC2_like, C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 4e-05
Identities = 18/78 (23%), Positives = 30/78 (38%), Gaps = 9/78 (11%)
Query: 22 YVKVQI-GKHKSKSRI-LKNNSNPVWNEEFVFRV--HNIDDEELVVSV-FQHNDDSGLFG 76
Y V I HK + + +NP WNE F + + L +++
Sbjct: 24 YAVVWIDPSHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYC---ERPSL 80
Query: 77 SSGELMGRVRVPVSSIAA 94
+L+G VRVP+ +
Sbjct: 81 GD-KLIGEVRVPLKDLLD 97
|
SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 125 |
| >gnl|CDD|175975 cd00276, C2B_Synaptotagmin, C2 domain second repeat present in Synaptotagmin | Back alignment and domain information |
|---|
Score = 43.7 bits (104), Expect = 5e-05
Identities = 27/91 (29%), Positives = 43/91 (47%), Gaps = 8/91 (8%)
Query: 538 LTVALVEGVNLASSEMTGLSDPYVVFT--CNG---KTRTSSVQLQTCDPQWHDILEFDAM 592
LTV +++ NL S+ GLSDPYV + G K + +SV+ T +P +++ FD
Sbjct: 16 LTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDVP 75
Query: 593 EE--PPSVLDVEVFDFDGPFDQATSLGHAEI 621
E L + V D D + +G +
Sbjct: 76 AEQLEEVSLVITVVDKDS-VGRNEVIGQVVL 105
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 134 |
| >gnl|CDD|176008 cd04043, C2_Munc13_fungal, C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 5e-05
Identities = 33/128 (25%), Positives = 49/128 (38%), Gaps = 13/128 (10%)
Query: 537 VLTVALVEGVNLASSEMTGLSDPYVVFTCN------GKTRTSSVQLQTCDPQWHDILEFD 590
+ T+ +V NL + GLSDPYV KTRT T +P+W + E +
Sbjct: 2 LFTIRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIY---DTLNPRWDEEFELE 58
Query: 591 AMEEPPSVLDVEVFDFDGPFDQATSLGHAEINFLKHTSTELADMWVSLEGKLAQSAQSKV 650
P + V+D + G A LK D + E L Q ++
Sbjct: 59 VPAGEPLWISATVWD-RSFVGKHDLCGRA---SLKLDPKRFGDDGLPREIWLDLDTQGRL 114
Query: 651 HLRIFLEN 658
LR+ +E
Sbjct: 115 LLRVSMEG 122
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 126 |
| >gnl|CDD|175985 cd04018, C2C_Ferlin, C2 domain third repeat in Ferlin | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 5e-05
Identities = 15/33 (45%), Positives = 20/33 (60%)
Query: 20 DSYVKVQIGKHKSKSRILKNNSNPVWNEEFVFR 52
D YV+V K K+ + KN+ NP WNE+ VF
Sbjct: 36 DPYVEVSFAGQKVKTSVKKNSYNPEWNEQIVFP 68
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 151 |
| >gnl|CDD|214725 smart00568, GRAM, domain in glucosyltransferases, myotubularins and other putative membrane-associated proteins | Back alignment and domain information |
|---|
Score = 41.4 bits (98), Expect = 5e-05
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 680 GRLFLSARIVGFYANLFGNKTKFFFLWEDIEDIQ 713
GRL++S + F +NL G TK DI I+
Sbjct: 24 GRLYISNYRLCFRSNLPGKLTKVVIPLADITRIE 57
|
Length = 60 |
| >gnl|CDD|176019 cd08373, C2A_Ferlin, C2 domain first repeat in Ferlin | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 7e-05
Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Query: 20 DSYVKVQIGKHKSKSRILKNNSNPVWNEEFVFRVHNI--DDEELVVSVFQHN 69
D KV K K+R+L+N NPVWNE F + + DE L + V +
Sbjct: 16 DRIAKVTFRGVKKKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYE 67
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 127 |
| >gnl|CDD|176055 cd08410, C2B_Synaptotagmin-17, C2 domain second repeat present in Synaptotagmin 17 | Back alignment and domain information |
|---|
Score = 43.3 bits (102), Expect = 8e-05
Identities = 32/109 (29%), Positives = 55/109 (50%), Gaps = 21/109 (19%)
Query: 5 RLYVYVLQGQDLL------AKDSYVKVQ------IGKHKSKSRILKNNSNPVWNEEFVFR 52
RL V +++ + LL D +VK+Q + K K K+ ++ +P +NE F F+
Sbjct: 15 RLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTK-KTSCMRGTIDPFYNESFSFK 73
Query: 53 V--HNIDDEELVVSVFQHNDDSGLFGSSGELMGRVRV-PVSSIAAEDNH 98
V +++ LV +V+ HN SS + +GR+ + SS +E NH
Sbjct: 74 VPQEELENVSLVFTVYGHN-----VKSSNDFIGRIVIGQYSSGPSETNH 117
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 135 |
| >gnl|CDD|176063 cd08681, C2_fungal_Inn1p-like, C2 domain found in fungal Ingression 1 (Inn1) proteins | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 8e-05
Identities = 32/127 (25%), Positives = 52/127 (40%), Gaps = 22/127 (17%)
Query: 6 LYVYVLQGQDL-----LAK-DSYVKVQIGKHKSKSR-ILKNNSNPVWNEEFVFRVHNIDD 58
L V VL+ ++L L K D Y ++IG K++ + +P W+EE F +
Sbjct: 3 LVVVVLKARNLPNKRKLDKQDPYCVLRIGGVTKKTKTDFRGGQHPEWDEELRFEITEDKK 62
Query: 59 EELVVSVFQHNDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTNK 118
L V+VF +DD +L+G V +S E W+ L +
Sbjct: 63 PILKVAVF--DDDK----RKPDLIGDTEVDLSPALKEGEF---DDWYEL------TLKGR 107
Query: 119 DCGKILL 125
G++ L
Sbjct: 108 YAGEVYL 114
|
Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contributing both to membrane ingression, as well as to stability of the contracting ring. Additionally, Inn1 might induce curvature of the plasma membrane adjacent to the contracting ring, thereby promoting ingression of the membrane. It has been shown that the C2 domain of human synaptotagmin induces curvature in target membranes and thereby contributes to fusion of these membranes with synaptic vesicles. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 118 |
| >gnl|CDD|176057 cd08675, C2B_RasGAP, C2 domain second repeat of Ras GTPase activating proteins (GAPs) | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 9e-05
Identities = 15/60 (25%), Positives = 29/60 (48%), Gaps = 5/60 (8%)
Query: 538 LTVALVEGVNLASSEMTGLSDPYVVFTCNG----KTRTSSVQLQTCDPQWHDILEFDAME 593
L+V ++E +LA G DP+ T N T+ + V+ +T +P++ + F+
Sbjct: 1 LSVRVLECRDLALKS-NGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTI 59
|
RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 137 |
| >gnl|CDD|176030 cd08384, C2B_Rabphilin_Doc2, C2 domain second repeat present in Rabphilin and Double C2 domain | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 1e-04
Identities = 19/77 (24%), Positives = 36/77 (46%), Gaps = 7/77 (9%)
Query: 538 LTVALVEGVNLASSEMTGLSDPYVVFTC-----NGKTRTSSVQLQTCDPQWHDILEFDAM 592
L V ++ VNLA+ + G SDP+V + V+ +T +P++++ +D
Sbjct: 15 LIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYDIK 74
Query: 593 EE--PPSVLDVEVFDFD 607
L++ V+D D
Sbjct: 75 HSDLAKKTLEITVWDKD 91
|
Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 133 |
| >gnl|CDD|241306 cd10570, PH-GRAM, Pleckstrin Homology-Glucosyltransferases, Rab-like GTPase activators and Myotubularins (PH-GRAM) domain | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 1e-04
Identities = 17/96 (17%), Positives = 32/96 (33%), Gaps = 18/96 (18%)
Query: 678 KKGRLFLSARIVGFYANLFGNKTKFFFLWEDIEDIQILSPSLATVGSPSLVIILWKGRGL 737
+G L+L+ + F + + T+ I ++ + S + S L I
Sbjct: 17 VEGTLYLTNYRLYFKSKERDSPTELDVPLGVISRVEKVGGSSSGENSYGLEITC------ 70
Query: 738 DARHGAKSQDEEGRLRFYFQSFVSFNDASRTIMALW 773
+ LRF +F + + R I L
Sbjct: 71 ---------KDMRNLRF---AFKQEDHSRRDIFELL 94
|
Myotubularin-related proteins are a subfamily of protein tyrosine phosphatases (PTPs) that dephosphorylate D3-phosphorylated inositol lipids. Mutations in this family cause the human neuromuscular disorders myotubular myopathy and type 4B Charcot-Marie-Tooth syndrome. 6 of the 13 MTMRs (MTMRs 5, 9-13) contain naturally occurring substitutions of residues required for catalysis by PTP family enzymes. Although these proteins are predicted to be enzymatically inactive, they are thought to function as antagonists of endogenous phosphatase activity or interaction modules. Most MTMRs contain a N-terminal PH-GRAM domain, a Rac-induced recruitment domain (RID) domain, a PTP domain (which may be active or inactive), a SET-interaction domain, and a C-terminal coiled-coil region. In addition some members contain DENN domain N-terminal to the PH-GRAM domain and FYVE, PDZ, and PH domains C-terminal to the coiled-coil region. The GRAM domain, found in myotubularins, glucosyltransferases, and other putative membrane-associated proteins, is part of a larger motif with a pleckstrin homology (PH) domain fold. Length = 94 |
| >gnl|CDD|176053 cd08408, C2B_Synaptotagmin-14_16, C2 domain second repeat present in Synaptotagmins 14 and 16 | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 1e-04
Identities = 25/76 (32%), Positives = 38/76 (50%), Gaps = 14/76 (18%)
Query: 5 RLYVYVLQGQDL------LAKDSYVKV----QIGKHKSKSR--ILKNNSNPVWNEEFVFR 52
RL V V++G + A D+YVK+ G+ SKS+ I + +P + E FVF+
Sbjct: 16 RLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSKTSIRRGQPDPEFKETFVFQ 75
Query: 53 VHNIDDEE--LVVSVF 66
V E L+ SV+
Sbjct: 76 VALFQLSEVTLMFSVY 91
|
Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 138 |
| >gnl|CDD|175991 cd04025, C2B_RasA1_RasA4, C2 domain second repeat present in RasA1 and RasA4 | Back alignment and domain information |
|---|
Score = 41.7 bits (98), Expect = 2e-04
Identities = 30/117 (25%), Positives = 49/117 (41%), Gaps = 17/117 (14%)
Query: 5 RLYVYVLQGQDLLAKD------SYVKVQIGKHKSKSRILKNNSNPVWNEEFVFRVHNIDD 58
RL +VL+ +DL KD +V+V ++ ++K + P WNE F F + D
Sbjct: 1 RLRCHVLEARDLAPKDRNGTSDPFVRVFYNGQTLETSVVKKSCYPRWNEVFEFELMEGAD 60
Query: 59 EELVVSVFQHNDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPT-WFSLETPKTRK 114
L V V+ D L + + +G+V + ++ WF L P R
Sbjct: 61 SPLSVEVW----DWDLVSKN-DFLGKVVFSIQTLQQA----KQEEGWFRLL-PDPRA 107
|
RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 123 |
| >gnl|CDD|176014 cd04049, C2_putative_Elicitor-responsive_gene, C2 domain present in the putative elicitor-responsive gene | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 2e-04
Identities = 23/88 (26%), Positives = 37/88 (42%), Gaps = 11/88 (12%)
Query: 537 VLTVALVEGVNLASSEMTGLSDPYVVFTCNGKTRTSSVQL-QTCDPQWHDILEFDAMEEP 595
L V L+ L ++ G DPYV+ C + R S V +P+W++ +F E P
Sbjct: 2 TLEVLLISAKGLQDTDFLGKIDPYVIIQCRTQERKSKVAKGDGRNPEWNEKFKFTV-EYP 60
Query: 596 PS---------VLDVEVFDFDGPFDQAT 614
++D + F D +AT
Sbjct: 61 GWGGDTKLILRIMDKDNFSDDDFIGEAT 88
|
In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members have a type-II topology. Length = 124 |
| >gnl|CDD|176033 cd08387, C2A_Synaptotagmin-8, C2A domain first repeat present in Synaptotagmin 8 | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 2e-04
Identities = 28/112 (25%), Positives = 53/112 (47%), Gaps = 6/112 (5%)
Query: 533 GDGWVLTVALVEGVNLASSEMTGLSDPYV---VFTCNGKTRTSSVQLQTCDPQW--HDIL 587
D +L V L++ NL + +G +DPY + T+ S + +T +P++ +
Sbjct: 13 KDMGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSKIHKKTLNPEFDESFVF 72
Query: 588 EFDAMEEPPSVLDVEVFDFDGPFDQATSLGHAEINFLKHTSTELADMWVSLE 639
E E P L+V ++DFD F + +G E+ + +E D+W ++
Sbjct: 73 EVPPQELPKRTLEVLLYDFDQ-FSRDECIGVVELPLAEVDLSEKLDLWRKIQ 123
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 124 |
| >gnl|CDD|175997 cd04031, C2A_RIM1alpha, C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 3e-04
Identities = 28/108 (25%), Positives = 48/108 (44%), Gaps = 25/108 (23%)
Query: 538 LTVALVEGVNLASSEMTGLSDPYV-VF-----TCNGKTRTSSVQLQTCDPQWHDILEF-- 589
L V +++ +L + L +PYV V+ + K RT +V+ +T +P+W+ E+
Sbjct: 18 LIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVK-KTLNPEWNQTFEYSN 76
Query: 590 ----DAMEEPPSVLDVEVFDFDGPFDQATSLGHAEINFLKHTSTELAD 633
E L+V V+D+D E +FL +LAD
Sbjct: 77 VRRETLKE---RTLEVTVWDYD---------RDGENDFLGEVVIDLAD 112
|
RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology and do not bind Ca2+. Length = 125 |
| >gnl|CDD|176063 cd08681, C2_fungal_Inn1p-like, C2 domain found in fungal Ingression 1 (Inn1) proteins | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 3e-04
Identities = 23/84 (27%), Positives = 34/84 (40%), Gaps = 7/84 (8%)
Query: 558 DPYVVFTCNGKTRTSSVQL---QTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGPFDQAT 614
DPY V G T+ + Q P+W + L F+ E+ +L V VFD D +
Sbjct: 23 DPYCVLRIGGVTKKTKTDFRGGQH--PEWDEELRFEITEDKKPILKVAVFDDD--KRKPD 78
Query: 615 SLGHAEINFLKHTSTELADMWVSL 638
+G E++ D W L
Sbjct: 79 LIGDTEVDLSPALKEGEFDDWYEL 102
|
Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contributing both to membrane ingression, as well as to stability of the contracting ring. Additionally, Inn1 might induce curvature of the plasma membrane adjacent to the contracting ring, thereby promoting ingression of the membrane. It has been shown that the C2 domain of human synaptotagmin induces curvature in target membranes and thereby contributes to fusion of these membranes with synaptic vesicles. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 118 |
| >gnl|CDD|176060 cd08678, C2_C21orf25-like, C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 3e-04
Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 8/73 (10%)
Query: 31 KSKSRILKNNSNPVWNEEFVFRVHNIDDEELVVSVFQHNDDSGLFGSSGELMGRVRVPVS 90
K +S KN SNP W+E F+F + + +EL+ V+ + S + +G VP
Sbjct: 32 KYQSSTQKNTSNPFWDEHFLFELSP-NSKELLFEVYDNGK-----KSDSKFLGLAIVPFD 85
Query: 91 SIAA--EDNHMLP 101
+ + P
Sbjct: 86 ELRKNPSGRQIFP 98
|
The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 126 |
| >gnl|CDD|176034 cd08388, C2A_Synaptotagmin-4-11, C2A domain first repeat present in Synaptotagmins 4 and 11 | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 3e-04
Identities = 16/35 (45%), Positives = 24/35 (68%), Gaps = 3/35 (8%)
Query: 20 DSYVKVQI---GKHKSKSRILKNNSNPVWNEEFVF 51
D YVK+Q+ +HK K+R+L+ NPV++E F F
Sbjct: 39 DPYVKLQLLPEKEHKVKTRVLRKTRNPVYDETFTF 73
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 128 |
| >gnl|CDD|176033 cd08387, C2A_Synaptotagmin-8, C2A domain first repeat present in Synaptotagmin 8 | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 4e-04
Identities = 26/96 (27%), Positives = 48/96 (50%), Gaps = 12/96 (12%)
Query: 6 LYVYVLQGQDLLAK------DSYVKVQI--GKHKSK-SRILKNNSNPVWNEEFVFRVHNI 56
L V ++Q ++L + D Y KV++ + +K S+I K NP ++E FVF V
Sbjct: 18 LNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSKIHKKTLNPEFDESFVFEVPPQ 77
Query: 57 DDEELVVSVFQHNDDSGLFGSSGELMGRVRVPVSSI 92
+ + + V ++ D S E +G V +P++ +
Sbjct: 78 ELPKRTLEVLLYDFDQ---FSRDECIGVVELPLAEV 110
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 124 |
| >gnl|CDD|176011 cd04046, C2_Calpain, C2 domain present in Calpain proteins | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 4e-04
Identities = 23/124 (18%), Positives = 44/124 (35%), Gaps = 24/124 (19%)
Query: 11 LQGQDL-LAKDSYVKVQIGKHKSKSRILKNNSNPVWNEEFVFRVHNIDDEELVVSVFQHN 69
L QD D YV ++ +S + K+ +P ++ + +F + + V+ N
Sbjct: 15 LSKQDSGGGADPYVIIKCEGESVRSPVQKDTLSPEFDTQAIFYRKKP-RSPIKIQVWNSN 73
Query: 70 ---DDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTNKDCGKILLT 126
D E +G+ + ++ LP RK G++ T
Sbjct: 74 LLCD---------EFLGQATLSADPNDSQTLRTLP----------LRKRGRDAAGEVPGT 114
Query: 127 ISLN 130
IS+
Sbjct: 115 ISVK 118
|
A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 126 |
| >gnl|CDD|176011 cd04046, C2_Calpain, C2 domain present in Calpain proteins | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 4e-04
Identities = 15/48 (31%), Positives = 24/48 (50%)
Query: 536 WVLTVALVEGVNLASSEMTGLSDPYVVFTCNGKTRTSSVQLQTCDPQW 583
V V + L+ + G +DPYV+ C G++ S VQ T P++
Sbjct: 3 VVTQVHVHSAEGLSKQDSGGGADPYVIIKCEGESVRSPVQKDTLSPEF 50
|
A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 126 |
| >gnl|CDD|175998 cd04032, C2_Perforin, C2 domain of Perforin | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 5e-04
Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 5/52 (9%)
Query: 5 RLYVYVLQGQDLL-----AKDSYVKVQIGKHKSKSRILKNNSNPVWNEEFVF 51
L V VL+ L + D YVKV G + ++ ++ NN+NP WN F F
Sbjct: 29 TLTVTVLRATGLWGDYFTSTDGYVKVFFGGQEKRTEVIWNNNNPRWNATFDF 80
|
Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 127 |
| >gnl|CDD|176067 cd08685, C2_RGS-like, C2 domain of the Regulator Of G-Protein Signaling (RGS) family | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 5e-04
Identities = 25/85 (29%), Positives = 47/85 (55%), Gaps = 14/85 (16%)
Query: 6 LYVYVLQGQDLLAK-----DSYVKVQIGKHKS-----KSRILKNNSNPVWNEEFVFRVHN 55
L ++VL+ + L + +SYVK+ + K K+ + +++NP+++E F F V+
Sbjct: 14 LTLHVLEAKGLRSTNSGTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLFHETFSFDVNE 73
Query: 56 IDDEE-LVVSVFQHN---DDSGLFG 76
D ++ L+V+V+ DSGL G
Sbjct: 74 RDYQKRLLVTVWNKLSKSRDSGLLG 98
|
This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 119 |
| >gnl|CDD|227371 COG5038, COG5038, Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 7e-04
Identities = 25/94 (26%), Positives = 46/94 (48%), Gaps = 12/94 (12%)
Query: 6 LYVYVLQGQDLLAKDS------YVKVQI-GKHKSKSRILKNNSNPVWNEEFVFRVHNIDD 58
L + + G++L + D +VK+ + K K++++K NPVWNEEF V N
Sbjct: 1042 LTIMLRSGENLPSSDENGYSDPFVKLFLNEKSVYKTKVVKKTLNPVWNEEFTIEVLNRVK 1101
Query: 59 EELVVSVFQHNDDSGLFGSSGELMGRVRVPVSSI 92
+ L ++V + G +L+G + +S +
Sbjct: 1102 DVLTINVNDWD-----SGEKNDLLGTAEIDLSKL 1130
|
Length = 1227 |
| >gnl|CDD|176021 cd08375, C2_Intersectin, C2 domain present in Intersectin | Back alignment and domain information |
|---|
Score = 40.1 bits (94), Expect = 0.001
Identities = 29/92 (31%), Positives = 44/92 (47%), Gaps = 2/92 (2%)
Query: 530 KAQGDGWVLTVALVEGVNLASSEMTGLSDPYVVFTCNGKTRTSSVQLQTCDPQWHDILEF 589
+A G G ++ V +VEG +L G SDPY + + + V T +P+W+ ++F
Sbjct: 10 RASGIGRLM-VVIVEGRDLKPCNSNGKSDPYCEVSMGSQEHKTKVVSDTLNPKWNSSMQF 68
Query: 590 DAMEEPPSVLDVEVFDFDGPFDQATSLGHAEI 621
+ VL + VFD D F LG EI
Sbjct: 69 FVKDLEQDVLCITVFDRD-FFSPDDFLGRTEI 99
|
A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. The members here have topology I. Length = 136 |
| >gnl|CDD|176049 cd08404, C2B_Synaptotagmin-4, C2 domain second repeat present in Synaptotagmin 4 | Back alignment and domain information |
|---|
Score = 39.7 bits (93), Expect = 0.001
Identities = 29/105 (27%), Positives = 49/105 (46%), Gaps = 14/105 (13%)
Query: 5 RLYVYVLQGQDL------LAKDSYVKVQIGKH-----KSKSRILKNNSNPVWNEEFVFRV 53
RL V VL+ + L D YVKV + K K+ + K NPV+NE FVF +
Sbjct: 16 RLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFDI 75
Query: 54 HNIDDEELVVSVFQHNDDSGLFGSSGELMGRVRVPVSSIAAEDNH 98
+ + E++ V + D + E++GR+ + + + +H
Sbjct: 76 PSEELEDISVEFLVLDSDR---VTKNEVIGRLVLGPKASGSGGHH 117
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136 |
| >gnl|CDD|176002 cd04037, C2E_Ferlin, C2 domain fifth repeat in Ferlin | Back alignment and domain information |
|---|
Score = 39.1 bits (92), Expect = 0.002
Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 10/71 (14%)
Query: 543 VEGVNLASSEMTGLSDPYVVFTCNGKT---RTSSVQLQTCDPQWHDILEFDA---MEEPP 596
V NL + G SDPY+ K R + + T +P + + E +A
Sbjct: 7 VRARNLQPKDPNGKSDPYLKIKLGKKKINDRDNYIP-NTLNPVFGKMFELEATLPGN--- 62
Query: 597 SVLDVEVFDFD 607
S+L + V D+D
Sbjct: 63 SILKISVMDYD 73
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fifth C2 repeat, C2E, and has a type-II topology. Length = 124 |
| >gnl|CDD|176070 cd08688, C2_KIAA0528-like, C2 domain found in the Human KIAA0528 cDNA clone | Back alignment and domain information |
|---|
Score = 38.8 bits (91), Expect = 0.002
Identities = 20/43 (46%), Positives = 28/43 (65%), Gaps = 4/43 (9%)
Query: 20 DSYVKVQIGKHKSKSRILKNNSNPVWN-EEFVFRVHNIDDEEL 61
D++V+V+ G K+ ++K + NPVWN E F F V DDEEL
Sbjct: 22 DAFVEVKFGSTTYKTDVVKKSLNPVWNSEWFRFEV---DDEEL 61
|
The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 110 |
| >gnl|CDD|176010 cd04045, C2C_Tricalbin-like, C2 domain third repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Score = 39.1 bits (92), Expect = 0.002
Identities = 18/81 (22%), Positives = 37/81 (45%), Gaps = 11/81 (13%)
Query: 20 DSYVKVQIGKH-KSKSRILKNNSNPVWNEEFVFRVHNIDDEELVVSVFQHNDDSGLFGSS 78
D YV+V + K ++ + N NPVW+E V + ++++ + V +
Sbjct: 23 DPYVRVLVNGIVKGRTVTISNTLNPVWDEVLYVPVTS-PNQKITLEVMDYE-------KV 74
Query: 79 GE--LMGRVRVPVSSIAAEDN 97
G+ +G V + VS + ++
Sbjct: 75 GKDRSLGSVEINVSDLIKKNE 95
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 120 |
| >gnl|CDD|175981 cd04014, C2_PKC_epsilon, C2 domain in Protein Kinase C (PKC) epsilon | Back alignment and domain information |
|---|
Score = 39.2 bits (92), Expect = 0.002
Identities = 31/109 (28%), Positives = 46/109 (42%), Gaps = 18/109 (16%)
Query: 558 DPYVVF----TCNGKTRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGPFDQA 613
DPYV T GKT T +T P W++ EF L++ VF D
Sbjct: 36 DPYVSIDVDDTHIGKTSTKP---KTNSPVWNE--EFTTEVHNGRNLELTVF-HDAAIGPD 89
Query: 614 TSLGHAEINF--LKHTSTELADMWVSLEGKLAQSAQSKVHLRIFLENNN 660
+ + I+F L + D+WV LE Q K+H++I L+ +
Sbjct: 90 DFVANCTISFEDLIQRGSGSFDLWVDLE------PQGKLHVKIELKGSA 132
|
A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-II topology. Length = 132 |
| >gnl|CDD|175981 cd04014, C2_PKC_epsilon, C2 domain in Protein Kinase C (PKC) epsilon | Back alignment and domain information |
|---|
Score = 39.2 bits (92), Expect = 0.002
Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 11/54 (20%)
Query: 20 DSYVKVQ-----IGKHKSKSRILKNNSNPVWNEEFVFRVHNIDDEELVVSVFQH 68
D YV + IGK +K + PVWNEEF VHN L ++VF
Sbjct: 36 DPYVSIDVDDTHIGKTSTKPKTNS----PVWNEEFTTEVHN--GRNLELTVFHD 83
|
A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-II topology. Length = 132 |
| >gnl|CDD|176006 cd04041, C2A_fungal, C2 domain first repeat; fungal group | Back alignment and domain information |
|---|
Score = 38.8 bits (91), Expect = 0.002
Identities = 23/86 (26%), Positives = 38/86 (44%), Gaps = 11/86 (12%)
Query: 20 DSYVKVQI---GKHKSKSRILKNNSNPVWNEEFVFRV---HNIDDEELVVSVFQHNDDSG 73
D YV GK +RI++ + NPVW E + V E L ++ DS
Sbjct: 24 DPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVLVTPDEVKAGERLSCRLW----DSD 79
Query: 74 LFGSSGELMGRVRVPVSSIAAEDNHM 99
F ++ + +GRV + + + + N M
Sbjct: 80 RF-TADDRLGRVEIDLKELIEDRNWM 104
|
C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 111 |
| >gnl|CDD|176054 cd08409, C2B_Synaptotagmin-15, C2 domain second repeat present in Synaptotagmin 15 | Back alignment and domain information |
|---|
Score = 39.2 bits (92), Expect = 0.002
Identities = 27/95 (28%), Positives = 41/95 (43%), Gaps = 17/95 (17%)
Query: 5 RLYVYVLQG-----QDLLAKDSYVKV--QIGKHKSKSR---ILKNNSNPVWNEEFVFRV- 53
RL V VL+ D YVKV I K++ ++ ++P +NE F F+V
Sbjct: 16 RLTVVVLRARGLRQLDHAHTSVYVKVSLMIHNKVVKTKKTEVVDGAASPSFNESFSFKVT 75
Query: 54 -HNIDDEELVVSVFQHNDDSGLFGSSGELMGRVRV 87
+D L +SV Q +L+GRV +
Sbjct: 76 SRQLDTASLSLSVMQSGG-----VRKSKLLGRVVL 105
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 137 |
| >gnl|CDD|175987 cd04020, C2B_SLP_1-2-3-4, C2 domain second repeat present in Synaptotagmin-like proteins 1-4 | Back alignment and domain information |
|---|
Score = 39.2 bits (92), Expect = 0.002
Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 13/67 (19%)
Query: 6 LYVYVLQGQDLLAK------DSYVKVQI-----GKHKSKSRILKNNSNPVWNEEFVFRVH 54
L+V+V + ++L A DS+VK + K K K+ ++K + NPVWN FV+
Sbjct: 29 LHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVWNHTFVYD-- 86
Query: 55 NIDDEEL 61
+ E+L
Sbjct: 87 GVSPEDL 93
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 162 |
| >gnl|CDD|227371 COG5038, COG5038, Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 0.003
Identities = 20/81 (24%), Positives = 38/81 (46%), Gaps = 7/81 (8%)
Query: 20 DSYVKVQI-GKHKSKSRILKNNSNPVWNEEFVFRVHNIDDEELVVSVFQHNDDSGLFGSS 78
D Y+ V + K+R+ KN NPVWNE F +++ D L +S++ N S
Sbjct: 460 DPYITVTFSDRVIGKTRVKKNTLNPVWNETFYILLNSFTD-PLNLSLYDFNS-----FKS 513
Query: 79 GELMGRVRVPVSSIAAEDNHM 99
+++G ++ ++ +
Sbjct: 514 DKVVGSTQLDLALLHQNPVKK 534
|
Length = 1227 |
| >gnl|CDD|175976 cd04009, C2B_Munc13-like, C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins | Back alignment and domain information |
|---|
Score = 38.4 bits (90), Expect = 0.003
Identities = 19/84 (22%), Positives = 38/84 (45%), Gaps = 17/84 (20%)
Query: 3 STRLYVYVLQGQDLLAKDS------YVKVQI-------GKHKSKSRILKNNSNPVWNEEF 49
L V +L ++LL DS +VKV++ K+++ K P+++E F
Sbjct: 15 EQSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESF 74
Query: 50 VFRV----HNIDDEELVVSVFQHN 69
F V +++ L+ +V ++
Sbjct: 75 EFNVPPEQCSVEGALLLFTVKDYD 98
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 133 |
| >gnl|CDD|176047 cd08402, C2B_Synaptotagmin-1, C2 domain second repeat present in Synaptotagmin 1 | Back alignment and domain information |
|---|
Score = 38.2 bits (89), Expect = 0.004
Identities = 26/77 (33%), Positives = 43/77 (55%), Gaps = 7/77 (9%)
Query: 538 LTVALVEGVNLASSEMTGLSDPYV--VFTCNGK---TRTSSVQLQTCDPQWHDILEFD-A 591
LTV ++E NL ++ GLSDPYV NGK + ++++ +T +P +++ F+
Sbjct: 17 LTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFEVP 76
Query: 592 MEEPPSV-LDVEVFDFD 607
E+ V L V V D+D
Sbjct: 77 FEQIQKVHLIVTVLDYD 93
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136 |
| >gnl|CDD|175985 cd04018, C2C_Ferlin, C2 domain third repeat in Ferlin | Back alignment and domain information |
|---|
Score = 38.4 bits (90), Expect = 0.004
Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 541 ALVEGVNLA-SSEMTGLSDPYVVFTCNGKTRTSSVQLQTCDPQWHDILEFDAM 592
++ V A E L DPYV + G+ +SV+ + +P+W++ + F M
Sbjct: 18 GIMANVKKAFLGEKKELVDPYVEVSFAGQKVKTSVKKNSYNPEWNEQIVFPEM 70
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 151 |
| >gnl|CDD|176039 cd08393, C2A_SLP-1_2, C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2 | Back alignment and domain information |
|---|
Score = 37.8 bits (88), Expect = 0.004
Identities = 36/119 (30%), Positives = 54/119 (45%), Gaps = 26/119 (21%)
Query: 6 LYVYVLQGQDLLAKDS-------YVKVQI-----GKHKSKSRILKNNSNPVWNEEFVFRV 53
L+V+V+Q QDL A D YVK + + K K+ + K NPV+NE ++V
Sbjct: 17 LHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKKTLNPVFNETLRYKV 76
Query: 54 HNID--DEELVVSVFQHNDDSG--LFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLE 108
+ L +SV+ H D G F +G V V + S + PTW+ L+
Sbjct: 77 EREELPTRVLNLSVW-HRDSLGRNSF------LGEVEVDLGSWDWSNTQ---PTWYPLQ 125
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 125 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 985 | |||
| KOG1032 | 590 | consensus Uncharacterized conserved protein, conta | 99.97 | |
| KOG1326 | 1105 | consensus Membrane-associated protein FER-1 and re | 99.9 | |
| COG5038 | 1227 | Ca2+-dependent lipid-binding protein, contains C2 | 99.89 | |
| KOG1028 | 421 | consensus Ca2+-dependent phospholipid-binding prot | 99.88 | |
| cd04016 | 121 | C2_Tollip C2 domain present in Toll-interacting pr | 99.88 | |
| cd08682 | 126 | C2_Rab11-FIP_classI C2 domain found in Rab11-famil | 99.83 | |
| cd08376 | 116 | C2B_MCTP_PRT C2 domain second repeat found in Mult | 99.83 | |
| cd04019 | 150 | C2C_MCTP_PRT_plant C2 domain third repeat found in | 99.82 | |
| cd04042 | 121 | C2A_MCTP_PRT C2 domain first repeat found in Multi | 99.82 | |
| cd08379 | 126 | C2D_MCTP_PRT_plant C2 domain fourth repeat found i | 99.81 | |
| cd04022 | 127 | C2A_MCTP_PRT_plant C2 domain first repeat found in | 99.81 | |
| cd04016 | 121 | C2_Tollip C2 domain present in Toll-interacting pr | 99.81 | |
| KOG1030 | 168 | consensus Predicted Ca2+-dependent phospholipid-bi | 99.81 | |
| cd08681 | 118 | C2_fungal_Inn1p-like C2 domain found in fungal Ing | 99.8 | |
| cd04036 | 119 | C2_cPLA2 C2 domain present in cytosolic PhosphoLip | 99.79 | |
| cd04024 | 128 | C2A_Synaptotagmin-like C2 domain first repeat pres | 99.79 | |
| cd08395 | 120 | C2C_Munc13 C2 domain third repeat in Munc13 (mamma | 99.79 | |
| cd08375 | 136 | C2_Intersectin C2 domain present in Intersectin. A | 99.79 | |
| cd08401 | 121 | C2A_RasA2_RasA3 C2 domain first repeat present in | 99.79 | |
| cd08391 | 121 | C2A_C2C_Synaptotagmin_like C2 domain first and thi | 99.78 | |
| cd08378 | 121 | C2B_MCTP_PRT_plant C2 domain second repeat found i | 99.77 | |
| cd04025 | 123 | C2B_RasA1_RasA4 C2 domain second repeat present in | 99.77 | |
| cd08682 | 126 | C2_Rab11-FIP_classI C2 domain found in Rab11-famil | 99.76 | |
| cd08381 | 122 | C2B_PI3K_class_II C2 domain second repeat present | 99.76 | |
| cd08677 | 118 | C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a | 99.76 | |
| cd08678 | 126 | C2_C21orf25-like C2 domain found in the Human chro | 99.76 | |
| cd08400 | 126 | C2_Ras_p21A1 C2 domain present in RAS p21 protein | 99.76 | |
| KOG1032 | 590 | consensus Uncharacterized conserved protein, conta | 99.75 | |
| cd08378 | 121 | C2B_MCTP_PRT_plant C2 domain second repeat found i | 99.75 | |
| cd04019 | 150 | C2C_MCTP_PRT_plant C2 domain third repeat found in | 99.75 | |
| cd04054 | 121 | C2A_Rasal1_RasA4 C2 domain first repeat present in | 99.75 | |
| cd04028 | 146 | C2B_RIM1alpha C2 domain second repeat contained in | 99.75 | |
| cd04015 | 158 | C2_plant_PLD C2 domain present in plant phospholip | 99.75 | |
| cd04043 | 126 | C2_Munc13_fungal C2 domain in Munc13 (mammalian un | 99.75 | |
| cd08377 | 119 | C2C_MCTP_PRT C2 domain third repeat found in Multi | 99.74 | |
| cd04033 | 133 | C2_NEDD4_NEDD4L C2 domain present in the Human neu | 99.74 | |
| cd04010 | 148 | C2B_RasA3 C2 domain second repeat present in RAS p | 99.74 | |
| cd04014 | 132 | C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) | 99.74 | |
| cd04050 | 105 | C2B_Synaptotagmin-like C2 domain second repeat pre | 99.73 | |
| cd04022 | 127 | C2A_MCTP_PRT_plant C2 domain first repeat found in | 99.73 | |
| cd08677 | 118 | C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a | 99.73 | |
| cd04027 | 127 | C2B_Munc13 C2 domain second repeat in Munc13 (mamm | 99.73 | |
| cd04029 | 125 | C2A_SLP-4_5 C2 domain first repeat present in Syna | 99.73 | |
| cd08393 | 125 | C2A_SLP-1_2 C2 domain first repeat present in Syna | 99.73 | |
| cd04017 | 135 | C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferl | 99.72 | |
| cd04042 | 121 | C2A_MCTP_PRT C2 domain first repeat found in Multi | 99.72 | |
| cd04039 | 108 | C2_PSD C2 domain present in Phosphatidylserine dec | 99.72 | |
| cd04041 | 111 | C2A_fungal C2 domain first repeat; fungal group. C | 99.72 | |
| cd08400 | 126 | C2_Ras_p21A1 C2 domain present in RAS p21 protein | 99.72 | |
| cd08688 | 110 | C2_KIAA0528-like C2 domain found in the Human KIAA | 99.72 | |
| cd08681 | 118 | C2_fungal_Inn1p-like C2 domain found in fungal Ing | 99.72 | |
| cd08373 | 127 | C2A_Ferlin C2 domain first repeat in Ferlin. Ferli | 99.71 | |
| cd08387 | 124 | C2A_Synaptotagmin-8 C2A domain first repeat presen | 99.71 | |
| cd08375 | 136 | C2_Intersectin C2 domain present in Intersectin. A | 99.71 | |
| cd08379 | 126 | C2D_MCTP_PRT_plant C2 domain fourth repeat found i | 99.71 | |
| cd04024 | 128 | C2A_Synaptotagmin-like C2 domain first repeat pres | 99.71 | |
| cd08385 | 124 | C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repe | 99.71 | |
| cd08394 | 127 | C2A_Munc13 C2 domain first repeat in Munc13 (mamma | 99.7 | |
| cd08392 | 128 | C2A_SLP-3 C2 domain first repeat present in Synapt | 99.7 | |
| cd04046 | 126 | C2_Calpain C2 domain present in Calpain proteins. | 99.7 | |
| cd08401 | 121 | C2A_RasA2_RasA3 C2 domain first repeat present in | 99.7 | |
| cd08376 | 116 | C2B_MCTP_PRT C2 domain second repeat found in Mult | 99.69 | |
| cd08395 | 120 | C2C_Munc13 C2 domain third repeat in Munc13 (mamma | 99.69 | |
| cd04031 | 125 | C2A_RIM1alpha C2 domain first repeat contained in | 99.69 | |
| cd04017 | 135 | C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferl | 99.69 | |
| cd08388 | 128 | C2A_Synaptotagmin-4-11 C2A domain first repeat pre | 99.69 | |
| cd04033 | 133 | C2_NEDD4_NEDD4L C2 domain present in the Human neu | 99.69 | |
| cd08382 | 123 | C2_Smurf-like C2 domain present in Smad ubiquitina | 99.69 | |
| cd04018 | 151 | C2C_Ferlin C2 domain third repeat in Ferlin. Ferli | 99.68 | |
| cd08386 | 125 | C2A_Synaptotagmin-7 C2A domain first repeat presen | 99.68 | |
| cd08678 | 126 | C2_C21orf25-like C2 domain found in the Human chro | 99.68 | |
| cd08685 | 119 | C2_RGS-like C2 domain of the Regulator Of G-Protei | 99.68 | |
| cd08377 | 119 | C2C_MCTP_PRT C2 domain third repeat found in Multi | 99.68 | |
| cd04036 | 119 | C2_cPLA2 C2 domain present in cytosolic PhosphoLip | 99.67 | |
| cd04025 | 123 | C2B_RasA1_RasA4 C2 domain second repeat present in | 99.67 | |
| cd04030 | 127 | C2C_KIAA1228 C2 domain third repeat present in unc | 99.67 | |
| cd08394 | 127 | C2A_Munc13 C2 domain first repeat in Munc13 (mamma | 99.67 | |
| cd04011 | 111 | C2B_Ferlin C2 domain second repeat in Ferlin. Ferl | 99.67 | |
| cd08690 | 155 | C2_Freud-1 C2 domain found in 5' repressor element | 99.67 | |
| cd08680 | 124 | C2_Kibra C2 domain found in Human protein Kibra. K | 99.67 | |
| cd04044 | 124 | C2A_Tricalbin-like C2 domain first repeat present | 99.67 | |
| cd08389 | 124 | C2A_Synaptotagmin-14_16 C2A domain first repeat pr | 99.67 | |
| cd04010 | 148 | C2B_RasA3 C2 domain second repeat present in RAS p | 99.67 | |
| cd08381 | 122 | C2B_PI3K_class_II C2 domain second repeat present | 99.66 | |
| KOG1030 | 168 | consensus Predicted Ca2+-dependent phospholipid-bi | 99.66 | |
| cd04040 | 115 | C2D_Tricalbin-like C2 domain fourth repeat present | 99.66 | |
| cd08392 | 128 | C2A_SLP-3 C2 domain first repeat present in Synapt | 99.66 | |
| cd08391 | 121 | C2A_C2C_Synaptotagmin_like C2 domain first and thi | 99.66 | |
| cd04049 | 124 | C2_putative_Elicitor-responsive_gene C2 domain pre | 99.66 | |
| cd04045 | 120 | C2C_Tricalbin-like C2 domain third repeat present | 99.66 | |
| cd04020 | 162 | C2B_SLP_1-2-3-4 C2 domain second repeat present in | 99.66 | |
| cd08521 | 123 | C2A_SLP C2 domain first repeat present in Synaptot | 99.65 | |
| cd04028 | 146 | C2B_RIM1alpha C2 domain second repeat contained in | 99.65 | |
| cd08390 | 123 | C2A_Synaptotagmin-15-17 C2A domain first repeat pr | 99.65 | |
| cd04038 | 145 | C2_ArfGAP C2 domain present in Arf GTPase Activati | 99.65 | |
| cd04051 | 125 | C2_SRC2_like C2 domain present in Soybean genes Re | 99.65 | |
| cd08675 | 137 | C2B_RasGAP C2 domain second repeat of Ras GTPase a | 99.64 | |
| cd04027 | 127 | C2B_Munc13 C2 domain second repeat in Munc13 (mamm | 99.64 | |
| cd04029 | 125 | C2A_SLP-4_5 C2 domain first repeat present in Syna | 99.64 | |
| cd04046 | 126 | C2_Calpain C2 domain present in Calpain proteins. | 99.64 | |
| cd08393 | 125 | C2A_SLP-1_2 C2 domain first repeat present in Syna | 99.64 | |
| KOG0696 | 683 | consensus Serine/threonine protein kinase [Signal | 99.64 | |
| cd04032 | 127 | C2_Perforin C2 domain of Perforin. Perforin contai | 99.64 | |
| cd04014 | 132 | C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) | 99.63 | |
| cd08676 | 153 | C2A_Munc13-like C2 domain first repeat in Munc13 ( | 99.63 | |
| cd08688 | 110 | C2_KIAA0528-like C2 domain found in the Human KIAA | 99.63 | |
| cd04050 | 105 | C2B_Synaptotagmin-like C2 domain second repeat pre | 99.62 | |
| cd08680 | 124 | C2_Kibra C2 domain found in Human protein Kibra. K | 99.62 | |
| cd04015 | 158 | C2_plant_PLD C2 domain present in plant phospholip | 99.62 | |
| cd04054 | 121 | C2A_Rasal1_RasA4 C2 domain first repeat present in | 99.62 | |
| cd04011 | 111 | C2B_Ferlin C2 domain second repeat in Ferlin. Ferl | 99.62 | |
| cd08382 | 123 | C2_Smurf-like C2 domain present in Smad ubiquitina | 99.61 | |
| cd08373 | 127 | C2A_Ferlin C2 domain first repeat in Ferlin. Ferli | 99.61 | |
| cd04037 | 124 | C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferli | 99.61 | |
| cd04013 | 146 | C2_SynGAP_like C2 domain present in Ras GTPase act | 99.61 | |
| cd04043 | 126 | C2_Munc13_fungal C2 domain in Munc13 (mammalian un | 99.61 | |
| cd04044 | 124 | C2A_Tricalbin-like C2 domain first repeat present | 99.6 | |
| cd08384 | 133 | C2B_Rabphilin_Doc2 C2 domain second repeat present | 99.6 | |
| cd08685 | 119 | C2_RGS-like C2 domain of the Regulator Of G-Protei | 99.59 | |
| cd04039 | 108 | C2_PSD C2 domain present in Phosphatidylserine dec | 99.59 | |
| cd04021 | 125 | C2_E3_ubiquitin_ligase C2 domain present in E3 ubi | 99.59 | |
| cd04013 | 146 | C2_SynGAP_like C2 domain present in Ras GTPase act | 99.59 | |
| cd08404 | 136 | C2B_Synaptotagmin-4 C2 domain second repeat presen | 99.59 | |
| cd04052 | 111 | C2B_Tricalbin-like C2 domain second repeat present | 99.58 | |
| cd08388 | 128 | C2A_Synaptotagmin-4-11 C2A domain first repeat pre | 99.58 | |
| cd04018 | 151 | C2C_Ferlin C2 domain third repeat in Ferlin. Ferli | 99.58 | |
| cd08406 | 136 | C2B_Synaptotagmin-12 C2 domain second repeat prese | 99.58 | |
| cd08691 | 137 | C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-li | 99.58 | |
| cd08407 | 138 | C2B_Synaptotagmin-13 C2 domain second repeat prese | 99.58 | |
| cd04026 | 131 | C2_PKC_alpha_gamma C2 domain in Protein Kinase C ( | 99.57 | |
| cd08387 | 124 | C2A_Synaptotagmin-8 C2A domain first repeat presen | 99.57 | |
| cd08389 | 124 | C2A_Synaptotagmin-14_16 C2A domain first repeat pr | 99.57 | |
| cd04009 | 133 | C2B_Munc13-like C2 domain second repeat in Munc13 | 99.57 | |
| cd04030 | 127 | C2C_KIAA1228 C2 domain third repeat present in unc | 99.57 | |
| cd08385 | 124 | C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repe | 99.57 | |
| cd04048 | 120 | C2A_Copine C2 domain first repeat in Copine. There | 99.56 | |
| cd04031 | 125 | C2A_RIM1alpha C2 domain first repeat contained in | 99.56 | |
| cd08383 | 117 | C2A_RasGAP C2 domain (first repeat) of Ras GTPase | 99.56 | |
| cd08405 | 136 | C2B_Synaptotagmin-7 C2 domain second repeat presen | 99.55 | |
| KOG1028 | 421 | consensus Ca2+-dependent phospholipid-binding prot | 99.55 | |
| cd04051 | 125 | C2_SRC2_like C2 domain present in Soybean genes Re | 99.55 | |
| cd00275 | 128 | C2_PLC_like C2 domain present in Phosphoinositide- | 99.55 | |
| cd08402 | 136 | C2B_Synaptotagmin-1 C2 domain second repeat presen | 99.55 | |
| cd08691 | 137 | C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-li | 99.54 | |
| cd04041 | 111 | C2A_fungal C2 domain first repeat; fungal group. C | 99.54 | |
| cd08406 | 136 | C2B_Synaptotagmin-12 C2 domain second repeat prese | 99.53 | |
| cd08675 | 137 | C2B_RasGAP C2 domain second repeat of Ras GTPase a | 99.53 | |
| cd08410 | 135 | C2B_Synaptotagmin-17 C2 domain second repeat prese | 99.53 | |
| cd08521 | 123 | C2A_SLP C2 domain first repeat present in Synaptot | 99.53 | |
| cd08386 | 125 | C2A_Synaptotagmin-7 C2A domain first repeat presen | 99.53 | |
| cd08403 | 134 | C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repe | 99.53 | |
| PLN03008 | 868 | Phospholipase D delta | 99.53 | |
| cd08407 | 138 | C2B_Synaptotagmin-13 C2 domain second repeat prese | 99.52 | |
| cd08686 | 118 | C2_ABR C2 domain in the Active BCR (Breakpoint clu | 99.51 | |
| cd00276 | 134 | C2B_Synaptotagmin C2 domain second repeat present | 99.51 | |
| cd04035 | 123 | C2A_Rabphilin_Doc2 C2 domain first repeat present | 99.51 | |
| cd08690 | 155 | C2_Freud-1 C2 domain found in 5' repressor element | 99.51 | |
| cd04032 | 127 | C2_Perforin C2 domain of Perforin. Perforin contai | 99.51 | |
| cd08383 | 117 | C2A_RasGAP C2 domain (first repeat) of Ras GTPase | 99.5 | |
| cd04021 | 125 | C2_E3_ubiquitin_ligase C2 domain present in E3 ubi | 99.5 | |
| cd08692 | 135 | C2B_Tac2-N C2 domain second repeat found in Tac2-N | 99.5 | |
| cd08408 | 138 | C2B_Synaptotagmin-14_16 C2 domain second repeat pr | 99.5 | |
| cd04038 | 145 | C2_ArfGAP C2 domain present in Arf GTPase Activati | 99.49 | |
| cd08390 | 123 | C2A_Synaptotagmin-15-17 C2A domain first repeat pr | 99.49 | |
| cd04049 | 124 | C2_putative_Elicitor-responsive_gene C2 domain pre | 99.49 | |
| cd08409 | 137 | C2B_Synaptotagmin-15 C2 domain second repeat prese | 99.48 | |
| cd04040 | 115 | C2D_Tricalbin-like C2 domain fourth repeat present | 99.48 | |
| cd04052 | 111 | C2B_Tricalbin-like C2 domain second repeat present | 99.48 | |
| cd08408 | 138 | C2B_Synaptotagmin-14_16 C2 domain second repeat pr | 99.48 | |
| cd04020 | 162 | C2B_SLP_1-2-3-4 C2 domain second repeat present in | 99.48 | |
| cd08692 | 135 | C2B_Tac2-N C2 domain second repeat found in Tac2-N | 99.48 | |
| KOG1011 | 1283 | consensus Neurotransmitter release regulator, UNC- | 99.48 | |
| PLN03200 | 2102 | cellulose synthase-interactive protein; Provisiona | 99.47 | |
| cd04009 | 133 | C2B_Munc13-like C2 domain second repeat in Munc13 | 99.45 | |
| cd08384 | 133 | C2B_Rabphilin_Doc2 C2 domain second repeat present | 99.45 | |
| cd04045 | 120 | C2C_Tricalbin-like C2 domain third repeat present | 99.45 | |
| cd04047 | 110 | C2B_Copine C2 domain second repeat in Copine. Ther | 99.44 | |
| cd08402 | 136 | C2B_Synaptotagmin-1 C2 domain second repeat presen | 99.44 | |
| cd08404 | 136 | C2B_Synaptotagmin-4 C2 domain second repeat presen | 99.43 | |
| cd08410 | 135 | C2B_Synaptotagmin-17 C2 domain second repeat prese | 99.43 | |
| cd04026 | 131 | C2_PKC_alpha_gamma C2 domain in Protein Kinase C ( | 99.43 | |
| cd08405 | 136 | C2B_Synaptotagmin-7 C2 domain second repeat presen | 99.42 | |
| cd08686 | 118 | C2_ABR C2 domain in the Active BCR (Breakpoint clu | 99.42 | |
| cd08676 | 153 | C2A_Munc13-like C2 domain first repeat in Munc13 ( | 99.42 | |
| PLN03008 | 868 | Phospholipase D delta | 99.42 | |
| KOG2059 | 800 | consensus Ras GTPase-activating protein [Signal tr | 99.41 | |
| cd04037 | 124 | C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferli | 99.41 | |
| cd08409 | 137 | C2B_Synaptotagmin-15 C2 domain second repeat prese | 99.41 | |
| cd08403 | 134 | C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repe | 99.4 | |
| cd00275 | 128 | C2_PLC_like C2 domain present in Phosphoinositide- | 99.38 | |
| cd04048 | 120 | C2A_Copine C2 domain first repeat in Copine. There | 99.38 | |
| PF00168 | 85 | C2: C2 domain; InterPro: IPR000008 The C2 domain i | 99.37 | |
| KOG0696 | 683 | consensus Serine/threonine protein kinase [Signal | 99.37 | |
| cd00276 | 134 | C2B_Synaptotagmin C2 domain second repeat present | 99.33 | |
| cd04035 | 123 | C2A_Rabphilin_Doc2 C2 domain first repeat present | 99.28 | |
| PLN03200 | 2102 | cellulose synthase-interactive protein; Provisiona | 99.25 | |
| KOG1011 | 1283 | consensus Neurotransmitter release regulator, UNC- | 99.25 | |
| KOG2059 | 800 | consensus Ras GTPase-activating protein [Signal tr | 99.25 | |
| cd00030 | 102 | C2 C2 domain. The C2 domain was first identified i | 99.22 | |
| cd04047 | 110 | C2B_Copine C2 domain second repeat in Copine. Ther | 99.22 | |
| PF00168 | 85 | C2: C2 domain; InterPro: IPR000008 The C2 domain i | 99.19 | |
| cd08374 | 133 | C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferli | 99.17 | |
| PLN02223 | 537 | phosphoinositide phospholipase C | 99.17 | |
| smart00239 | 101 | C2 Protein kinase C conserved region 2 (CalB). Ca2 | 99.15 | |
| KOG1013 | 362 | consensus Synaptic vesicle protein rabphilin-3A [I | 99.1 | |
| PLN02952 | 599 | phosphoinositide phospholipase C | 99.09 | |
| KOG1328 | 1103 | consensus Synaptic vesicle protein BAIAP3, involve | 99.02 | |
| cd08374 | 133 | C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferli | 99.01 | |
| PLN02223 | 537 | phosphoinositide phospholipase C | 99.0 | |
| cd00030 | 102 | C2 C2 domain. The C2 domain was first identified i | 98.98 | |
| PLN02230 | 598 | phosphoinositide phospholipase C 4 | 98.98 | |
| PLN02270 | 808 | phospholipase D alpha | 98.98 | |
| PLN02952 | 599 | phosphoinositide phospholipase C | 98.91 | |
| PLN02222 | 581 | phosphoinositide phospholipase C 2 | 98.9 | |
| PLN02228 | 567 | Phosphoinositide phospholipase C | 98.9 | |
| smart00239 | 101 | C2 Protein kinase C conserved region 2 (CalB). Ca2 | 98.89 | |
| KOG1031 | 1169 | consensus Predicted Ca2+-dependent phospholipid-bi | 98.89 | |
| KOG0169 | 746 | consensus Phosphoinositide-specific phospholipase | 98.89 | |
| PLN02270 | 808 | phospholipase D alpha | 98.86 | |
| KOG1328 | 1103 | consensus Synaptic vesicle protein BAIAP3, involve | 98.82 | |
| cd08689 | 109 | C2_fungal_Pkc1p C2 domain found in protein kinase | 98.8 | |
| PLN02230 | 598 | phosphoinositide phospholipase C 4 | 98.79 | |
| COG5038 | 1227 | Ca2+-dependent lipid-binding protein, contains C2 | 98.76 | |
| PLN02222 | 581 | phosphoinositide phospholipase C 2 | 98.76 | |
| KOG0169 | 746 | consensus Phosphoinositide-specific phospholipase | 98.75 | |
| PLN02228 | 567 | Phosphoinositide phospholipase C | 98.67 | |
| KOG1264 | 1267 | consensus Phospholipase C [Lipid transport and met | 98.62 | |
| KOG1031 | 1169 | consensus Predicted Ca2+-dependent phospholipid-bi | 98.61 | |
| cd08689 | 109 | C2_fungal_Pkc1p C2 domain found in protein kinase | 98.6 | |
| KOG1264 | 1267 | consensus Phospholipase C [Lipid transport and met | 98.43 | |
| PLN02352 | 758 | phospholipase D epsilon | 98.28 | |
| PF02893 | 69 | GRAM: GRAM domain; InterPro: IPR004182 The GRAM do | 98.21 | |
| PLN02352 | 758 | phospholipase D epsilon | 98.18 | |
| KOG0905 | 1639 | consensus Phosphoinositide 3-kinase [Signal transd | 98.12 | |
| smart00568 | 61 | GRAM domain in glucosyltransferases, myotubularins | 98.08 | |
| PLN02964 | 644 | phosphatidylserine decarboxylase | 98.05 | |
| KOG0905 | 1639 | consensus Phosphoinositide 3-kinase [Signal transd | 98.01 | |
| cd08683 | 143 | C2_C2cd3 C2 domain found in C2 calcium-dependent d | 97.7 | |
| KOG1013 | 362 | consensus Synaptic vesicle protein rabphilin-3A [I | 97.68 | |
| KOG1326 | 1105 | consensus Membrane-associated protein FER-1 and re | 97.5 | |
| KOG1327 | 529 | consensus Copine [Signal transduction mechanisms] | 97.32 | |
| cd08684 | 103 | C2A_Tac2-N C2 domain first repeat found in Tac2-N | 97.27 | |
| PLN02964 | 644 | phosphatidylserine decarboxylase | 97.25 | |
| cd08683 | 143 | C2_C2cd3 C2 domain found in C2 calcium-dependent d | 97.16 | |
| KOG3837 | 523 | consensus Uncharacterized conserved protein, conta | 96.96 | |
| KOG1327 | 529 | consensus Copine [Signal transduction mechanisms] | 96.91 | |
| KOG2060 | 405 | consensus Rab3 effector RIM1 and related proteins, | 96.76 | |
| KOG2060 | 405 | consensus Rab3 effector RIM1 and related proteins, | 96.55 | |
| KOG1265 | 1189 | consensus Phospholipase C [Lipid transport and met | 96.15 | |
| KOG3837 | 523 | consensus Uncharacterized conserved protein, conta | 95.93 | |
| KOG1265 | 1189 | consensus Phospholipase C [Lipid transport and met | 95.81 | |
| cd08398 | 158 | C2_PI3K_class_I_alpha C2 domain present in class I | 95.8 | |
| PF12416 | 340 | DUF3668: Cep120 protein; InterPro: IPR022136 This | 95.79 | |
| cd08398 | 158 | C2_PI3K_class_I_alpha C2 domain present in class I | 95.73 | |
| PF12416 | 340 | DUF3668: Cep120 protein; InterPro: IPR022136 This | 95.25 | |
| PF15627 | 156 | CEP76-C2: CEP76 C2 domain | 95.24 | |
| cd08693 | 173 | C2_PI3K_class_I_beta_delta C2 domain present in cl | 95.03 | |
| cd08684 | 103 | C2A_Tac2-N C2 domain first repeat found in Tac2-N | 94.98 | |
| PF15627 | 156 | CEP76-C2: CEP76 C2 domain | 94.82 | |
| cd08380 | 156 | C2_PI3K_like C2 domain present in phosphatidylinos | 94.67 | |
| cd08397 | 159 | C2_PI3K_class_III C2 domain present in class III p | 94.63 | |
| cd08693 | 173 | C2_PI3K_class_I_beta_delta C2 domain present in cl | 94.41 | |
| PF10698 | 159 | DUF2505: Protein of unknown function (DUF2505); In | 93.93 | |
| cd08687 | 98 | C2_PKN-like C2 domain in Protein kinase C-like (PK | 93.83 | |
| cd04012 | 171 | C2A_PI3K_class_II C2 domain first repeat present i | 93.24 | |
| cd08380 | 156 | C2_PI3K_like C2 domain present in phosphatidylinos | 92.54 | |
| PF10358 | 143 | NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; | 91.67 | |
| KOG1452 | 442 | consensus Predicted Rho GTPase-activating protein | 91.52 | |
| PF00792 | 142 | PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: I | 90.43 | |
| cd04012 | 171 | C2A_PI3K_class_II C2 domain first repeat present i | 90.23 | |
| cd08397 | 159 | C2_PI3K_class_III C2 domain present in class III p | 89.95 | |
| cd08399 | 178 | C2_PI3K_class_I_gamma C2 domain present in class I | 89.92 | |
| cd05018 | 144 | CoxG Carbon monoxide dehydrogenase subunit G (CoxG | 89.69 | |
| cd08687 | 98 | C2_PKN-like C2 domain in Protein kinase C-like (PK | 88.86 | |
| cd08876 | 195 | START_1 Uncharacterized subgroup of the steroidoge | 88.85 | |
| PF10358 | 143 | NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; | 88.26 | |
| cd08871 | 222 | START_STARD10-like Lipid-binding START domain of m | 85.85 | |
| cd08399 | 178 | C2_PI3K_class_I_gamma C2 domain present in class I | 85.09 | |
| cd08868 | 208 | START_STARD1_3_like Cholesterol-binding START doma | 85.01 | |
| PF00792 | 142 | PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: I | 84.88 | |
| cd08870 | 209 | START_STARD2_7-like Lipid-binding START domain of | 84.49 | |
| KOG1452 | 442 | consensus Predicted Rho GTPase-activating protein | 84.26 | |
| smart00142 | 100 | PI3K_C2 Phosphoinositide 3-kinase, region postulat | 84.04 | |
| cd07821 | 140 | PYR_PYL_RCAR_like Pyrabactin resistance 1 (PYR1), | 83.15 | |
| cd00177 | 193 | START Lipid-binding START domain of mammalian STAR | 82.52 | |
| PF14429 | 184 | DOCK-C2: C2 domain in Dock180 and Zizimin proteins | 81.93 | |
| smart00142 | 100 | PI3K_C2 Phosphoinositide 3-kinase, region postulat | 81.06 |
| >KOG1032 consensus Uncharacterized conserved protein, contains GRAM domain [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.5e-31 Score=308.67 Aligned_cols=276 Identities=17% Similarity=0.223 Sum_probs=216.6
Q ss_pred CCcchhhhhhhhhhhhccccceeEeeeeEeeeeccccCcceEEEEeccccccccccCCcccccCCCeEEEEEecCCCccc
Q 001987 660 NGVETIKEYLTKMEKEVGKKGRLFLSARIVGFYANLFGNKTKFFFLWEDIEDIQILSPSLATVGSPSLVIILWKGRGLDA 739 (985)
Q Consensus 660 ~~~~~l~~~l~~lek~i~~~gr~y~s~~~~~f~snif~~~~~~~i~~~di~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~ 739 (985)
.....+.++.|++.+++..+||||++..++|||||||||+++.+||+++|..++|..+| .+.+++++|..
T Consensus 119 ~~~~l~~~~~cal~reillQGrmyis~~~icF~s~i~gw~~~~vIpf~eI~~ikk~~ta--g~fpn~i~i~t-------- 188 (590)
T KOG1032|consen 119 DPEILLTDYSCALQREILLQGRMYISEEHICFNSNIFGWETKVVIPFDEITLIKKTKTA--GIFPNAIEITT-------- 188 (590)
T ss_pred CcceeeeecchhhccccccccccccccceeeecccccCccceeEEeeeeeeeeehhhhc--cCCCcceEEec--------
Confidence 34556788899999999999999999999999999999999999999999999999998 56667777762
Q ss_pred cCCCCcCCccccEEEEEeeccCcchhhHHHHHHHHhcc---CCc----------hhhhhhh----hhhccccc-------
Q 001987 740 RHGAKSQDEEGRLRFYFQSFVSFNDASRTIMALWRSRT---LTA----------YQKEQIA----EEQQVQEE------- 795 (985)
Q Consensus 740 ~~~~~~~~~~~~~k~~F~SF~srd~a~~~i~~~w~~~~---~~~----------~~~~~~~----~~~~~~~~------- 795 (985)
+..+|.|+||.+||.||.+|..+-+... .++ +.+.... ........
T Consensus 189 ----------~~~ky~f~s~~Srda~~~~~~~~~~~~~~~s~s~~~~~~~l~~~~~~~~~~~~~~~~~~~~~s~~~~s~~ 258 (590)
T KOG1032|consen 189 ----------GTTKYIFVSLLSRDATYKLIKLLLHKFLDSSGSPRADSDYLSSVEPEVNDDQQGNVDNSQSPSALQNSFD 258 (590)
T ss_pred ----------CCCcceeeecccCccHHHHHHHhhhhcccccCCccccchhcccCCCCcCcccccccccCCCccccccccC
Confidence 3458999999999999997644333211 111 1000000 00000000
Q ss_pred ccccccC-CCCCCccccccceeEeeeecCChHHHHh-ccCCCchhHHHHHHcCCcceEEcccccCCCCceeEEEEEEe--
Q 001987 796 MSTAADR-GSVPNFEDAKMSKVYNAELPISVKALME-MFDGGKLEHQVMEKSGCHNYVTTPWDLVKPGVCERHLSYRF-- 871 (985)
Q Consensus 796 ~~~~~~~-~~~~~~~~~~~~~~~~~~~p~~~~~~~~-lf~~s~f~~~~~~~~~~~~~~~~~W~~~~~~~~~R~~sy~~-- 871 (985)
.+.++.. ..+-..-......+.+-.+.+++..||+ +|.+..|...+.+.+..+++...+|.....+...|.++|+.
T Consensus 259 ~~~~e~~~~~~~~~~~~~~~v~~~~~~s~~~~~~~~~lf~d~~~~~~~l~~~~~~~vs~~~~~~~~~~~~~r~~~y~~~l 338 (590)
T KOG1032|consen 259 SPKEEELEHDFSCSLSRLFGVLGRLPFSAPIGAFFSLLFGDNTFFFFFLEDQDEIQVSPIPWKGPRSGILLRTLSYTKGL 338 (590)
T ss_pred CCccccccccccccccccccccccccccccccccceeeccCcceeeeccccccccccccccccCCCccceeEeccCCccC
Confidence 0000000 0000000001345667788899999999 68988899999999999999999999777789999999996
Q ss_pred ccccCCCceeeeeEEEEeeccCCCcEEEEEEEeeCCCCCCCeEEEEEEEEEEecCCCCCccEEEEEEEEEEEeeeeehhh
Q 001987 872 NRHVSIFGGEVTCTQQKSPLASGEGWIVNEVMSLHDVPFDDHFRVHFRYEIEKSPLAHNACKCAIYIGISWLKSTKFQQR 951 (985)
Q Consensus 872 ~~~~~~~~~~~~~~q~~~~~~~~~~~vv~~~~~~~dVPygd~F~v~~ry~i~~~~~~~~~~~l~v~~~v~~~k~t~~K~~ 951 (985)
..+++|+.+.|.++|...+....+++.|...+.|+|||||++|+|++||||+|..+ ++|+|.|+.+|.|.+++|.+.+
T Consensus 339 ~~~~gPk~t~~~~~~~l~~~~~~~~~~vls~t~~~~vps~~~f~v~~~y~i~~~~~--~~~~l~v~~~V~~~~~sw~~~~ 416 (590)
T KOG1032|consen 339 PAKSGPKSTDCEGTQTLHHQDLEKYFRVLSETLTPDVPSGDSFYVKTRYLISRAGS--NSCKLKVSTSVEWTKSSWDVPV 416 (590)
T ss_pred CCcCCCccccccceeeEEeccchhhhhhhheeccCCccccceeeeeEEEEEEecCC--cceeecceeEEEeccCchhhcc
Confidence 88999999999999888888888889999999999999999999999999999999 9999999999999999999999
Q ss_pred hhhchH
Q 001987 952 ITQNIT 957 (985)
Q Consensus 952 Ie~~~~ 957 (985)
+|.++.
T Consensus 417 ~~~~~~ 422 (590)
T KOG1032|consen 417 SEIGSN 422 (590)
T ss_pred cccccc
Confidence 999886
|
|
| >KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.1e-25 Score=261.74 Aligned_cols=463 Identities=19% Similarity=0.215 Sum_probs=298.2
Q ss_pred cEEEEEEEEeecCC------CCCcEEEEEECCeEEeecCccCCCCCeEeeEEEEE-Ee--------cCCCceEEEEEEec
Q 001987 4 TRLYVYVLQGQDLL------AKDSYVKVQIGKHKSKSRILKNNSNPVWNEEFVFR-VH--------NIDDEELVVSVFQH 68 (985)
Q Consensus 4 ~~L~V~V~~Ar~L~------~~DPyv~v~l~~~~~kT~v~~~t~nP~wnE~f~f~-v~--------~~~~~~L~~~V~D~ 68 (985)
-.|+++++|||+|. .+|||+.+.+.++.+.|.++.+|+||.|+++..|. +. ...-..+.|+|||.
T Consensus 206 ~~lR~yiyQar~L~a~dk~~~sdp~a~v~f~~qs~~T~~v~~tl~ptwdq~~~f~~~ei~ge~~~~~~~ppi~v~e~yd~ 285 (1105)
T KOG1326|consen 206 SPLRSYIYQARALGAPDKDDESDPDAAVEFCGQSKETEVVPGTLNPTWDQTIIFDEVEIYGEAHLVLKNPPIRVFEVYDL 285 (1105)
T ss_pred hhhHHHHHHHHhhcCCCcccCCCchhhhhcccccceeEeecCcCCCCccceeeccceeecCccchhhcCCCeEEEEeehh
Confidence 35788999999998 79999999999999999999999999999999998 43 22336788999999
Q ss_pred CCCCCCCCCCCCeeEEEEE-eCccccccCCCCCCCeEEEeecCCCCCCCCccccEEEEEEEEEecCCeeeEEEEeeeccC
Q 001987 69 NDDSGLFGSSGELMGRVRV-PVSSIAAEDNHMLPPTWFSLETPKTRKFTNKDCGKILLTISLNGKGHNLSSNRLLYLHSN 147 (985)
Q Consensus 69 d~~~~~~~~~d~~lG~~~i-~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~~G~I~lsl~~~~~~~~l~v~v~~~~a~~ 147 (985)
+ + .+.++|+|+... |...+. .+...|+++.+. +...|+++++++.+.....
T Consensus 286 d---r--~g~~ef~gr~~~~p~V~~~-----~p~lkw~p~~rg------~~l~gd~l~a~eliq~~~~------------ 337 (1105)
T KOG1326|consen 286 D---R--SGINEFKGRKKQRPYVMVQ-----CPALKWVPTMRG------AFLDGDVLIAAELIQIGKP------------ 337 (1105)
T ss_pred h---h--hchHHhhcccccceEEEec-----CCccceEEeecc------cccccchhHHHHHHhhcCC------------
Confidence 9 5 689999999887 444333 346789999822 4567998888876543220
Q ss_pred CCCCCCCCCCCCe--EEEEEcCCCCCCccccccccchhhhHHHHHHHhhccCC-CCCCCC-CCCCCCCCCCCCcCCC-CC
Q 001987 148 VSSNESKELEDPC--VLSHDVSCSKAPCLDVTEGNHLMKAMVSHLEKIFNKND-QGLKTE-DSSELSSTPSDYEDCV-EE 222 (985)
Q Consensus 148 L~~~d~~g~sdP~--vkv~l~~~~~~~~~k~~~~~~~~~~~~~~~~~~f~~~~-~~~~~~-~~~~~~~~~~~~e~~~-~~ 222 (985)
+ +..+|- .-+++.+.+++++.+.++.+.++.-+- |-+. +.+... .+-...++++...... -+
T Consensus 338 i------~~p~~~~~~~~~~vp~~iRp~~q~~~~evl~wgLr-------n~k~~~m~~~~~P~~~~e~g~e~v~s~~I~~ 404 (1105)
T KOG1326|consen 338 I------PQPPPQREIIFSLVPKKIRPKTQIGKAELLMWGLR-------NPKKSGMASTFSPALLVEFGGERVSSFSIFN 404 (1105)
T ss_pred C------CCCCcccccceeccccCCCcceeeeeeehhhhhhc-------ccccccccccCCcceeEeeCCceEeeeeehh
Confidence 0 111110 247889999999999999998765542 2222 222222 1222456666555444 56
Q ss_pred CCCCCchHHHHHhhcccCCCCCC---CCCCCCcceEeeEeecChhhhhhcccCCCchhhHHH----HHHhCCccceeCCC
Q 001987 223 HPPSHNFEEAIKMMQSRENEGDM---PENLQGGILLDQLYQVSPCDLNTFLFAPDSQFRKDL----AELQGTKDVQEGPW 295 (985)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~e~---p~~~~g~~~~d~~~~~~~~~l~~llf~~~s~F~~~~----~~~~~~~d~~~~pw 295 (985)
-..++||..++..+.+..+.++. |.+. +++|. ++|.+.- +.+..+..+.|+||
T Consensus 405 ~k~npnf~s~~~~~~v~lpd~e~Y~ppl~a---kvvd~-----------------~~fg~~~v~g~c~i~~l~nf~c~p~ 464 (1105)
T KOG1326|consen 405 RKKNPNFPSRVLGRLVILPDEELYMPPLNA---KVVDL-----------------RQFGRMEVVGQCKILSLYNFFCDPS 464 (1105)
T ss_pred hhhCCCCceeEEEEEEeccchHhhCcccee---EEEec-----------------ccccceeehhhhcchhhhhhccCch
Confidence 67778887777777777766655 3233 34443 4455554 44445566678888
Q ss_pred cccCCCCCceEEEEEEEeccCcCccceEEEEEEEEEeeCCCeEEEEEEEeCCCCCCCCceEeEEEEEEecCCCCCCCCCc
Q 001987 296 EWKSGEMTCLTRAVSYMKAATKLVKAVKATEQQTYLKANGQEFAILVTVSTPDVPYGNTFNVQLLYKIIPGPELSSGEDS 375 (985)
Q Consensus 296 ~~~~~~~~~~~R~~~y~~~~~~~~k~~~~~e~q~~~~~~~~~~~v~~~~~tpdvP~g~~F~v~~~y~i~~~~~~~~~~~~ 375 (985)
..+.-.|.-..-. +.-++ ++.+ +.++...+..+. . .-..+.
T Consensus 465 ~~~~~~Pq~~~d~------~~~~~---------------------------~~~~--~~~~~~~~~~l~---~-~~~~~~ 505 (1105)
T KOG1326|consen 465 AVNSITPQFASDP------VSIMM---------------------------GSTD--NEIRHCNSSTLP---A-SPHEDE 505 (1105)
T ss_pred hhcccCcCCCCCc------hhhhc---------------------------CCch--hhhhhccccCCC---C-Cccccc
Confidence 5332221110000 00000 0000 011111111111 1 112234
Q ss_pred cEEEEEEEEEEeeecceeeeeecccccchHHHHHHHHHHHHhhccccCCCCccchhhhhcccccccccchhhhhhcccce
Q 001987 376 SHLIISWGIDFHQSTMMRGMIEGGARQGLKESFEQFANLLAQNLKILDSKDASDKDHMLATLQTEQQSDWELASEYFWNF 455 (985)
Q Consensus 376 ~~l~v~~~i~~~~s~~~Kg~iek~~~~g~~e~~~~~~~~l~~~~k~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~f~~~ 455 (985)
+.-.++||.+|+.++ +.- ++-+. +.+....++|.|++++ | .+..|.++
T Consensus 506 ~e~~~~~w~k~~~~~---~~~---~k~~~------~~~K~~~~LKiyn~el----e----------------~v~ef~~l 553 (1105)
T KOG1326|consen 506 EEREVDWWGKFYPSA---EEN---AKWEV------YEHKINVTLKIYNMEL----E----------------MVAEFRGL 553 (1105)
T ss_pred cceehhhhhhccccc---ccc---ccccc------cccccceEEEEehhhh----h----------------hHHHHhhh
Confidence 445789999999887 111 11111 1111123667776655 2 34557777
Q ss_pred eeeehhhHHHHheeeeeee-cCCCCCCccccC----CCCCCccceeEEeeEEEEechhhhhhhhHhhhcccccCCCCCcc
Q 001987 456 TVVSAGFMILYVVVHILLC-EPSKRQGLEFYG----LDLPDSFGELISCGILVIQLEQVFNMVGHFVRARLRKGSDHGVK 530 (985)
Q Consensus 456 ~~~~~~~~~l~~~~~~~~~-~p~~~~~~e~~g----~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 530 (985)
.+.+.+|. +|++....-+ .+.+ .| +|+| +++|++.+.+. ..++|. .++..
T Consensus 554 ~D~~~~f~-l~rG~~~~e~~e~~I-vg-~fKgl~rIyp~~~~~~~p~--------------~pr~~~---~~~~~----- 608 (1105)
T KOG1326|consen 554 QDWAVTFK-LYRGKEGLECLEQQI-VG-EFKGLFRIYPVPRNPSSPA--------------PPRHFL---DLPKE----- 608 (1105)
T ss_pred hhccceeE-eeeccccCCCcccch-hh-hhhcceeeecCCCccCCCC--------------Chhhhh---ccccc-----
Confidence 87777777 6666643111 2222 23 6777 36665544433 223332 22211
Q ss_pred ccCCCeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCEEE--EeeeccCCCCCeEeEEEEEEeecCCCCEEEEEEEecCC
Q 001987 531 AQGDGWVLTVALVEGVNLASSEMTGLSDPYVVFTCNGKTR--TSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDG 608 (985)
Q Consensus 531 ~~~~~g~L~V~v~~a~~L~~~d~~g~~DPyv~v~~~~~~~--kT~~~~~tlnP~Wne~f~f~v~~~~~~~L~v~V~D~d~ 608 (985)
.....+++|+|++|.+|.+.|.+|.+|||+.+.+|++.. +...+.+|+||++++.|++.+..+....|.++|||+|.
T Consensus 609 -~pi~~LvrVyvv~A~~L~p~D~ng~adpYv~l~lGk~~~~d~~~yip~tlnPVfgkmfel~~~lp~ek~l~v~vyd~D~ 687 (1105)
T KOG1326|consen 609 -EPIKCLVRVYVVEAFSLQPSDGNGDADPYVKLLLGKKRTLDRAHYIPNTLNPVFGKMFELECLLPFEKDLIVEVYDHDL 687 (1105)
T ss_pred -CcceeeEEEEEEEeeeccccCCCCCcCceeeeeeccchhhhhhhcCcCCCCcHHHHHHHhhcccchhhcceeEEEEeec
Confidence 133568999999999999999999999999999998874 56679999999999999999877888899999999999
Q ss_pred CCCCCCccceEEEEeec
Q 001987 609 PFDQATSLGHAEINFLK 625 (985)
Q Consensus 609 ~~~~dd~lG~~~i~l~~ 625 (985)
++.|+.||++.|+|+.
T Consensus 688 -~~~d~~iget~iDLEn 703 (1105)
T KOG1326|consen 688 -EAQDEKIGETTIDLEN 703 (1105)
T ss_pred -ccccchhhceehhhhh
Confidence 7999999999999986
|
|
| >COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.2e-21 Score=229.34 Aligned_cols=122 Identities=28% Similarity=0.425 Sum_probs=109.2
Q ss_pred CCeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCE-EEEeeeccCCCCCeEeEEEEEEeecCCCCEEEEEEEecCCCCCC
Q 001987 534 DGWVLTVALVEGVNLASSEMTGLSDPYVVFTCNGK-TRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGPFDQ 612 (985)
Q Consensus 534 ~~g~L~V~v~~a~~L~~~d~~g~~DPyv~v~~~~~-~~kT~~~~~tlnP~Wne~f~f~v~~~~~~~L~v~V~D~d~~~~~ 612 (985)
..|.|+|.+..|.||+..|.+|.+||||++.++++ .++|+++++|+||+|||+|..++.......|.+.|+|||.. .+
T Consensus 1038 nsG~l~I~~~~~~nl~~~d~ng~sDpfv~~~ln~k~vyktkv~KktlNPvwNEe~~i~v~~r~~D~~~i~v~Dwd~~-~k 1116 (1227)
T COG5038 1038 NSGYLTIMLRSGENLPSSDENGYSDPFVKLFLNEKSVYKTKVVKKTLNPVWNEEFTIEVLNRVKDVLTINVNDWDSG-EK 1116 (1227)
T ss_pred ccCcEEEEEeccCCCcccccCCCCCceEEEEecceecccccchhccCCCCccccceEeeeccccceEEEEEeecccC-CC
Confidence 47899999999999999999999999999999976 79999999999999999999998778888999999999984 89
Q ss_pred CCccceEEEEeeccccCcccceEEEccccccCCcceeEEEEEee
Q 001987 613 ATSLGHAEINFLKHTSTELADMWVSLEGKLAQSAQSKVHLRIFL 656 (985)
Q Consensus 613 dd~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~g~l~l~~~l 656 (985)
+|.||.+.|+|..+..+.....-.+|+++.-....|.+|+.+.+
T Consensus 1117 nd~lg~~~idL~~l~~~~~~n~~i~ldgk~~~~~~g~~~~~~~~ 1160 (1227)
T COG5038 1117 NDLLGTAEIDLSKLEPGGTTNSNIPLDGKTFIVLDGTLHPGFNF 1160 (1227)
T ss_pred ccccccccccHhhcCcCCccceeeeccCcceEecccEeecceec
Confidence 99999999999999999888888999986644456666666543
|
|
| >KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.4e-22 Score=227.68 Aligned_cols=167 Identities=26% Similarity=0.358 Sum_probs=146.6
Q ss_pred CcEEEEEEEEeecCC------CCCcEEEEEECC---eEEeecCccCCCCCeEeeEEEEEEe--cCCCceEEEEEEecCCC
Q 001987 3 STRLYVYVLQGQDLL------AKDSYVKVQIGK---HKSKSRILKNNSNPVWNEEFVFRVH--NIDDEELVVSVFQHNDD 71 (985)
Q Consensus 3 ~~~L~V~V~~Ar~L~------~~DPyv~v~l~~---~~~kT~v~~~t~nP~wnE~f~f~v~--~~~~~~L~~~V~D~d~~ 71 (985)
...|.|+|++|++|+ .+||||++++++ .+.+|++.++|+||.|||+|.|.|+ +.....|.+.|||.|
T Consensus 166 ~~~L~V~V~qa~~Lp~~d~~g~sdpyVK~~llPdk~~k~kT~v~r~tlnP~fnEtf~f~v~~~~l~~~~L~l~V~~~d-- 243 (421)
T KOG1028|consen 166 LNLLTVRVIQAHDLPAKDRGGTSDPYVKVYLLPDKKGKFKTRVHRKTLNPVFNETFRFEVPYEELSNRVLHLSVYDFD-- 243 (421)
T ss_pred CCEEEEEEEEecCCCcccCCCCCCCeeEEEEcCCCCCcceeeeeecCcCCccccceEeecCHHHhccCEEEEEEEecC--
Confidence 468999999999999 589999999985 4599999999999999999999976 588999999999999
Q ss_pred CCCCCCCCCeeEEEEEeCccccccCCCCCCCeEEEeecCCCCCCCCccccEEEEEEEEEecCCeeeEEEEeeeccCCCCC
Q 001987 72 SGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTNKDCGKILLTISLNGKGHNLSSNRLLYLHSNVSSN 151 (985)
Q Consensus 72 ~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~~G~I~lsl~~~~~~~~l~v~v~~~~a~~L~~~ 151 (985)
+ ++++++||++.++|..+.... ....|++|....... ....|+|+++++|.+.++++++.|++ |+||+.+
T Consensus 244 -r--fsr~~~iGev~~~l~~~~~~~---~~~~w~~l~~~~~~~--~~~~gel~~sL~Y~p~~g~ltv~v~k--ar~L~~~ 313 (421)
T KOG1028|consen 244 -R--FSRHDFIGEVILPLGEVDLLS---TTLFWKDLQPSSTDS--EELAGELLLSLCYLPTAGRLTVVVIK--ARNLKSM 313 (421)
T ss_pred -C--cccccEEEEEEecCccccccc---cceeeeccccccCCc--ccccceEEEEEEeecCCCeEEEEEEE--ecCCCcc
Confidence 7 479999999999999998763 257899998433322 22338999999999999999999997 9999999
Q ss_pred CCCCCCCCeEEEEEcCCCCCCccccccccc
Q 001987 152 ESKELEDPCVLSHDVSCSKAPCLDVTEGNH 181 (985)
Q Consensus 152 d~~g~sdP~vkv~l~~~~~~~~~k~~~~~~ 181 (985)
+..+.+|||||++++...++..+++|..++
T Consensus 314 ~~~~~~d~~Vk~~l~~~~~~~~kkkT~~~~ 343 (421)
T KOG1028|consen 314 DVGGLSDPYVKVTLLDGDKRLSKKKTSVKK 343 (421)
T ss_pred cCCCCCCccEEEEEecCCceeeeeeeeccc
Confidence 999999999999999999888888886665
|
|
| >cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip) | Back alignment and domain information |
|---|
Probab=99.88 E-value=8.6e-22 Score=186.52 Aligned_cols=118 Identities=18% Similarity=0.299 Sum_probs=105.8
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEECCEEEEeeeccC-CCCCeEeEEEEEEeecCCCCEEEEEEEecCCCCCCCC
Q 001987 536 WVLTVALVEGVNLASSEMTGLSDPYVVFTCNGKTRTSSVQLQ-TCDPQWHDILEFDAMEEPPSVLDVEVFDFDGPFDQAT 614 (985)
Q Consensus 536 g~L~V~v~~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~~~~~-tlnP~Wne~f~f~v~~~~~~~L~v~V~D~d~~~~~dd 614 (985)
|.|.|+|++|++|+..+ .|++||||++.+++++++|+++.+ ++||+|||+|.|.+. +....|.|+|||+|. +++||
T Consensus 2 g~L~v~v~~Ak~l~~~~-~g~sDPYv~i~lg~~~~kT~v~~~~~~nP~WNe~F~f~v~-~~~~~l~~~V~d~d~-~~~dd 78 (121)
T cd04016 2 GRLSITVVQAKLVKNYG-LTRMDPYCRIRVGHAVYETPTAYNGAKNPRWNKTIQCTLP-EGVDSIYIEIFDERA-FTMDE 78 (121)
T ss_pred cEEEEEEEEccCCCcCC-CCCCCceEEEEECCEEEEeEEccCCCCCCccCeEEEEEec-CCCcEEEEEEEeCCC-CcCCc
Confidence 79999999999998877 799999999999999999999865 899999999999964 445689999999998 89999
Q ss_pred ccceEEEEee-ccccCcccceEEEccccccCCcceeEEEEEee
Q 001987 615 SLGHAEINFL-KHTSTELADMWVSLEGKLAQSAQSKVHLRIFL 656 (985)
Q Consensus 615 ~lG~~~i~l~-~l~~~~~~~~w~~L~~~~~~~~~g~l~l~~~l 656 (985)
+||++.|+|. .+..++..+.|++|.+..+....|.|||.+.+
T Consensus 79 ~iG~~~i~l~~~~~~g~~~~~W~~L~~~~~~~~~g~i~l~l~y 121 (121)
T cd04016 79 RIAWTHITIPESVFNGETLDDWYSLSGKQGEDKEGMINLVFSY 121 (121)
T ss_pred eEEEEEEECchhccCCCCccccEeCcCccCCCCceEEEEEEeC
Confidence 9999999996 57777778999999987777788999999864
|
Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian |
| >cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.1e-20 Score=179.04 Aligned_cols=116 Identities=19% Similarity=0.345 Sum_probs=102.4
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECCEEEEeeeccCCCCCeEeEEEEEEeec-----CCCCEEEEEEEecCCCCCC
Q 001987 538 LTVALVEGVNLASSEMTGLSDPYVVFTCNGKTRTSSVQLQTCDPQWHDILEFDAME-----EPPSVLDVEVFDFDGPFDQ 612 (985)
Q Consensus 538 L~V~v~~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~~~~~tlnP~Wne~f~f~v~~-----~~~~~L~v~V~D~d~~~~~ 612 (985)
|+|+|++|+||+.+|..|.+||||++++++++++|+++++++||+|||.|.|.+.. .....|.|+|||+|. +++
T Consensus 1 ~~V~V~~A~~L~~~d~~g~~dpYv~v~l~~~~~kT~v~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~-~~~ 79 (126)
T cd08682 1 VQVTVLQARGLLCKGKSGTNDAYVIIQLGKEKYSTSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNL-LGL 79 (126)
T ss_pred CEEEEEECcCCcCCCCCcCCCceEEEEECCeeeeeeeecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEccc-cCC
Confidence 57999999999999999999999999999999999999999999999999999754 256789999999998 789
Q ss_pred CCccceEEEEeeccc--cCcccceEEEcccccc--CCcceeEEEEE
Q 001987 613 ATSLGHAEINFLKHT--STELADMWVSLEGKLA--QSAQSKVHLRI 654 (985)
Q Consensus 613 dd~lG~~~i~l~~l~--~~~~~~~w~~L~~~~~--~~~~g~l~l~~ 654 (985)
|++||++.|+|.++. .+.....|++|.++.+ ....|+|+|++
T Consensus 80 d~~iG~~~i~l~~l~~~~~~~~~~W~~L~~~~~~~~~~~Gei~l~~ 125 (126)
T cd08682 80 DKFLGQVSIPLNDLDEDKGRRRTRWFKLESKPGKDDKERGEIEVDI 125 (126)
T ss_pred CceeEEEEEEHHHhhccCCCcccEEEECcCCCCCCccccceEEEEe
Confidence 999999999999987 5566789999987433 23579999886
|
Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member |
| >cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Probab=99.83 E-value=8.4e-20 Score=173.37 Aligned_cols=115 Identities=30% Similarity=0.505 Sum_probs=105.7
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCEEEEeeeccCCCCCeEeEEEEEEeecCCCCEEEEEEEecCCCCCCCCcc
Q 001987 537 VLTVALVEGVNLASSEMTGLSDPYVVFTCNGKTRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGPFDQATSL 616 (985)
Q Consensus 537 ~L~V~v~~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~~~~~tlnP~Wne~f~f~v~~~~~~~L~v~V~D~d~~~~~dd~l 616 (985)
+|+|+|++|+||+..|.+|.+||||++++++++.+|+++++|+||.|||+|.|.+.......|.|+|||+|. +++|++|
T Consensus 1 ~~~V~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~v~v~d~~~-~~~~~~i 79 (116)
T cd08376 1 VVTIVLVEGKNLPPMDDNGLSDPYVKFRLGNEKYKSKVCSKTLNPQWLEQFDLHLFDDQSQILEIEVWDKDT-GKKDEFI 79 (116)
T ss_pred CEEEEEEEEECCCCCCCCCCCCcEEEEEECCEeEecccccCCCCCceeEEEEEEecCCCCCEEEEEEEECCC-CCCCCeE
Confidence 479999999999999999999999999999999999999999999999999999765557899999999998 7899999
Q ss_pred ceEEEEeeccccCcccceEEEccccccCCcceeEEEEEeee
Q 001987 617 GHAEINFLKHTSTELADMWVSLEGKLAQSAQSKVHLRIFLE 657 (985)
Q Consensus 617 G~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~g~l~l~~~ls 657 (985)
|++.++|.++..+...+.|++|.+ .+|+|++++.+.
T Consensus 80 G~~~~~l~~l~~~~~~~~w~~L~~-----~~G~~~~~~~~~ 115 (116)
T cd08376 80 GRCEIDLSALPREQTHSLELELED-----GEGSLLLLLTLT 115 (116)
T ss_pred EEEEEeHHHCCCCCceEEEEEccC-----CCcEEEEEEEec
Confidence 999999999988888999999985 368999998764
|
MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei |
| >cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.3e-19 Score=179.12 Aligned_cols=124 Identities=23% Similarity=0.332 Sum_probs=107.5
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCEEEEeeeccC-CCCCeEeEEEEEEeecCCCCEEEEEEEecCCCCCCCCc
Q 001987 537 VLTVALVEGVNLASSEMTGLSDPYVVFTCNGKTRTSSVQLQ-TCDPQWHDILEFDAMEEPPSVLDVEVFDFDGPFDQATS 615 (985)
Q Consensus 537 ~L~V~v~~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~~~~~-tlnP~Wne~f~f~v~~~~~~~L~v~V~D~d~~~~~dd~ 615 (985)
.|+|+|++|+||++.|.+|.+||||+++++++..+|+++.+ ++||+|||.|+|.+..+....|.|+|||+|. +++|++
T Consensus 1 ~L~V~Vi~A~~L~~~d~~g~sDPYV~v~l~~~~~kTk~~~~~t~nP~WNE~F~f~v~~~~~~~l~v~V~d~~~-~~~dd~ 79 (150)
T cd04019 1 YLRVTVIEAQDLVPSDKNRVPEVFVKAQLGNQVLRTRPSQTRNGNPSWNEELMFVAAEPFEDHLILSVEDRVG-PNKDEP 79 (150)
T ss_pred CEEEEEEEeECCCCCCCCCCCCeEEEEEECCEEeeeEeccCCCCCCcccCcEEEEecCccCCeEEEEEEEecC-CCCCCe
Confidence 37999999999999999999999999999999999999876 6999999999999755455799999999998 688999
Q ss_pred cceEEEEeeccccC----cccceEEEcccccc-------CCcceeEEEEEeeecCCC
Q 001987 616 LGHAEINFLKHTST----ELADMWVSLEGKLA-------QSAQSKVHLRIFLENNNG 661 (985)
Q Consensus 616 lG~~~i~l~~l~~~----~~~~~w~~L~~~~~-------~~~~g~l~l~~~ls~~~~ 661 (985)
||++.|+|.++..+ ...+.|++|.+..+ ...+|+|||++.+....+
T Consensus 80 lG~v~i~L~~l~~~~~~~~~~~~W~~L~~~~~~~~~~k~~k~~g~l~l~i~~~~~~~ 136 (150)
T cd04019 80 LGRAVIPLNDIERRVDDRPVPSRWFSLERPGGAMEQKKKRKFASRIHLRLCLDGGYH 136 (150)
T ss_pred EEEEEEEHHHCcccCCCCccCCceEECcCCCCcccccccCcccccEEEEEEecCcce
Confidence 99999999998643 44689999987543 356799999999986544
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates |
| >cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.1e-19 Score=171.98 Aligned_cols=118 Identities=25% Similarity=0.397 Sum_probs=107.2
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECC-EEEEeeeccCCCCCeEeEEEEEEeecCCCCEEEEEEEecCCCCCCCCcc
Q 001987 538 LTVALVEGVNLASSEMTGLSDPYVVFTCNG-KTRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGPFDQATSL 616 (985)
Q Consensus 538 L~V~v~~a~~L~~~d~~g~~DPyv~v~~~~-~~~kT~~~~~tlnP~Wne~f~f~v~~~~~~~L~v~V~D~d~~~~~dd~l 616 (985)
|+|+|++|+||+..|..|.+||||++++++ +.++|+++++++||+|||.|.|.+ ......|.|+|||+|. +++|++|
T Consensus 2 L~v~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~f~v-~~~~~~l~~~v~D~d~-~~~~~~i 79 (121)
T cd04042 2 LDIHLKEGRNLAARDRGGTSDPYVKFKYGGKTVYKSKTIYKNLNPVWDEKFTLPI-EDVTQPLYIKVFDYDR-GLTDDFM 79 (121)
T ss_pred eEEEEEEeeCCCCcCCCCCCCCeEEEEECCEEEEEeeeccCCCCCccceeEEEEe-cCCCCeEEEEEEeCCC-CCCCcce
Confidence 799999999999999999999999999987 678999999999999999999995 4456799999999998 7899999
Q ss_pred ceEEEEeeccccCcccceEEEccccccCCcceeEEEEEeee
Q 001987 617 GHAEINFLKHTSTELADMWVSLEGKLAQSAQSKVHLRIFLE 657 (985)
Q Consensus 617 G~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~g~l~l~~~ls 657 (985)
|++.+++.++..+...+.|++|.+..+....|.|+|.+.+.
T Consensus 80 G~~~~~l~~l~~~~~~~~~~~L~~~~~~~~~G~l~l~~~~~ 120 (121)
T cd04042 80 GSAFVDLSTLELNKPTEVKLKLEDPNSDEDLGYISLVVTLT 120 (121)
T ss_pred EEEEEEHHHcCCCCCeEEEEECCCCCCccCceEEEEEEEEC
Confidence 99999999999888899999998766556789999998764
|
MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein |
| >cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.7e-19 Score=171.94 Aligned_cols=113 Identities=18% Similarity=0.268 Sum_probs=99.9
Q ss_pred EEEEEEEeec---CCCCCCCCCCCcEEEEEECCEEEEeeeccCCCCCeEeEEEEEEeecCCCCEEEEEEEecCCCCC---
Q 001987 538 LTVALVEGVN---LASSEMTGLSDPYVVFTCNGKTRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGPFD--- 611 (985)
Q Consensus 538 L~V~v~~a~~---L~~~d~~g~~DPyv~v~~~~~~~kT~~~~~tlnP~Wne~f~f~v~~~~~~~L~v~V~D~d~~~~--- 611 (985)
|.|+|++|+| |+++|..|.+||||++++++++.+|+++++++||+|||+|.|.+. .+...|.|+|||+|. ++
T Consensus 2 L~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~g~~~~rTk~~~~~~nP~WnE~f~f~v~-~~~~~l~v~V~d~d~-~~~~~ 79 (126)
T cd08379 2 LEVGILGAQGLDVLRAKDGRGSTDAYCVAKYGPKWVRTRTVEDSSNPRWNEQYTWPVY-DPCTVLTVGVFDNSQ-SHWKE 79 (126)
T ss_pred eEEEEEEeECCccccccccCCCCCeeEEEEECCEEeEcCcccCCCCCcceeEEEEEec-CCCCEEEEEEEECCC-ccccc
Confidence 7899999999 899999999999999999999999999999999999999999964 455699999999997 53
Q ss_pred ---CCCccceEEEEeeccccCcccceEEEcccc--ccCCcceeEEE
Q 001987 612 ---QATSLGHAEINFLKHTSTELADMWVSLEGK--LAQSAQSKVHL 652 (985)
Q Consensus 612 ---~dd~lG~~~i~l~~l~~~~~~~~w~~L~~~--~~~~~~g~l~l 652 (985)
+|++||++.|+|..+..+...+.|++|.+. .+....|.|++
T Consensus 80 ~~~~dd~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~g~l~~ 125 (126)
T cd08379 80 AVQPDVLIGKVRIRLSTLEDDRVYAHSYPLLSLNPSGVKKMGELEC 125 (126)
T ss_pred cCCCCceEEEEEEEHHHccCCCEEeeEEEeEeCCCCCccCCcEEEe
Confidence 899999999999999988888999999863 23345677765
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate |
| >cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.4e-19 Score=173.05 Aligned_cols=120 Identities=20% Similarity=0.360 Sum_probs=104.6
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCEEEEeeeccCCCCCeEeEEEEEEeecCC---CCEEEEEEEecCCCCC-C
Q 001987 537 VLTVALVEGVNLASSEMTGLSDPYVVFTCNGKTRTSSVQLQTCDPQWHDILEFDAMEEP---PSVLDVEVFDFDGPFD-Q 612 (985)
Q Consensus 537 ~L~V~v~~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~~~~~tlnP~Wne~f~f~v~~~~---~~~L~v~V~D~d~~~~-~ 612 (985)
.|+|+|++|++|++.|..|.+||||++++++++++|+++++++||+|||.|.|.+.... ...|.|+|||+|. ++ +
T Consensus 1 ~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~~~rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~-~~~~ 79 (127)
T cd04022 1 KLVVEVVDAQDLMPKDGQGSSSAYVELDFDGQKKRTRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRR-SGRR 79 (127)
T ss_pred CeEEEEEEeeCCCCCCCCCCcCcEEEEEECCEEecceeEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCC-CcCC
Confidence 37999999999999999999999999999999999999999999999999999964322 3589999999998 66 8
Q ss_pred CCccceEEEEeeccc-cCcccceEEEccccc-cCCcceeEEEEEeee
Q 001987 613 ATSLGHAEINFLKHT-STELADMWVSLEGKL-AQSAQSKVHLRIFLE 657 (985)
Q Consensus 613 dd~lG~~~i~l~~l~-~~~~~~~w~~L~~~~-~~~~~g~l~l~~~ls 657 (985)
+++||++.|++.++. .+.....|++|+.++ ....+|+|+|+++++
T Consensus 80 d~~lG~v~i~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~ 126 (127)
T cd04022 80 RSFLGRVRISGTSFVPPSEAVVQRYPLEKRGLFSRVRGEIGLKVYIT 126 (127)
T ss_pred CCeeeEEEEcHHHcCCCCCccceEeEeeeCCCCCCccEEEEEEEEEc
Confidence 999999999999987 456778999998753 223689999999875
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates |
| >cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip) | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.7e-19 Score=167.83 Aligned_cols=114 Identities=19% Similarity=0.343 Sum_probs=96.8
Q ss_pred CcEEEEEEEEeecCC-----CCCcEEEEEECCeEEeecCccC-CCCCeEeeEEEEEEecCCCceEEEEEEecCCCCCCCC
Q 001987 3 STRLYVYVLQGQDLL-----AKDSYVKVQIGKHKSKSRILKN-NSNPVWNEEFVFRVHNIDDEELVVSVFQHNDDSGLFG 76 (985)
Q Consensus 3 ~~~L~V~V~~Ar~L~-----~~DPyv~v~l~~~~~kT~v~~~-t~nP~wnE~f~f~v~~~~~~~L~~~V~D~d~~~~~~~ 76 (985)
.+.|+|+|++|++|+ ++||||+|.+++++.||+++.+ +.||+|||+|.|.+. .....|.|+|||+| . .
T Consensus 1 ~g~L~v~v~~Ak~l~~~~~g~sDPYv~i~lg~~~~kT~v~~~~~~nP~WNe~F~f~v~-~~~~~l~~~V~d~d---~--~ 74 (121)
T cd04016 1 VGRLSITVVQAKLVKNYGLTRMDPYCRIRVGHAVYETPTAYNGAKNPRWNKTIQCTLP-EGVDSIYIEIFDER---A--F 74 (121)
T ss_pred CcEEEEEEEEccCCCcCCCCCCCceEEEEECCEEEEeEEccCCCCCCccCeEEEEEec-CCCcEEEEEEEeCC---C--C
Confidence 478999999999987 7999999999999999999876 899999999999994 34578999999999 4 5
Q ss_pred CCCCeeEEEEEeCcc-ccccCCCCCCCeEEEeecCCCCCCCCccccEEEEEEEE
Q 001987 77 SSGELMGRVRVPVSS-IAAEDNHMLPPTWFSLETPKTRKFTNKDCGKILLTISL 129 (985)
Q Consensus 77 ~~d~~lG~~~i~L~~-l~~~~~~~~~~~W~~L~~~~~~~~~~~~~G~I~lsl~~ 129 (985)
++|++||++.++|.. +..+ .....||+|. +..+ ....|+|+|+++|
T Consensus 75 ~~dd~iG~~~i~l~~~~~~g---~~~~~W~~L~-~~~~---~~~~g~i~l~l~y 121 (121)
T cd04016 75 TMDERIAWTHITIPESVFNG---ETLDDWYSLS-GKQG---EDKEGMINLVFSY 121 (121)
T ss_pred cCCceEEEEEEECchhccCC---CCccccEeCc-CccC---CCCceEEEEEEeC
Confidence 789999999999964 5543 3478999998 4333 3467999999987
|
Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian |
| >KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=7.9e-20 Score=175.93 Aligned_cols=94 Identities=30% Similarity=0.515 Sum_probs=89.3
Q ss_pred CeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCEEEEeeeccCCCCCeEeEEEEEEeecCCCCEEEEEEEecCCCCCCCC
Q 001987 535 GWVLTVALVEGVNLASSEMTGLSDPYVVFTCNGKTRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGPFDQAT 614 (985)
Q Consensus 535 ~g~L~V~v~~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~~~~~tlnP~Wne~f~f~v~~~~~~~L~v~V~D~d~~~~~dd 614 (985)
-|.|+|+|++|.||..+|..++|||||++.+|+|+.+|+++.+++||+|||.|+|. ..++...|+++|||+|. |+.||
T Consensus 5 vGLL~v~v~~g~~L~~rD~~~sSDPyVVl~lg~q~lkT~~v~~n~NPeWNe~ltf~-v~d~~~~lkv~VyD~D~-fs~dD 82 (168)
T KOG1030|consen 5 VGLLRVRVKRGKNLAIRDFLGSSDPYVVLELGNQKLKTRVVYKNLNPEWNEELTFT-VKDPNTPLKVTVYDKDT-FSSDD 82 (168)
T ss_pred ceEEEEEEEeecCeeeeccccCCCCeEEEEECCeeeeeeeecCCCCCcccceEEEE-ecCCCceEEEEEEeCCC-CCccc
Confidence 57999999999999999988999999999999999999999999999999999999 67889999999999999 99999
Q ss_pred ccceEEEEeeccccCc
Q 001987 615 SLGHAEINFLKHTSTE 630 (985)
Q Consensus 615 ~lG~~~i~l~~l~~~~ 630 (985)
+||.|+|+|..+....
T Consensus 83 ~mG~A~I~l~p~~~~~ 98 (168)
T KOG1030|consen 83 FMGEATIPLKPLLEAQ 98 (168)
T ss_pred ccceeeeccHHHHHHh
Confidence 9999999999976654
|
|
| >cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.7e-19 Score=170.47 Aligned_cols=117 Identities=25% Similarity=0.403 Sum_probs=103.3
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEECCEEEEeeecc-CCCCCeEeEEEEEEeecCCCCEEEEEEEecCCCCCCCC
Q 001987 536 WVLTVALVEGVNLASSEMTGLSDPYVVFTCNGKTRTSSVQL-QTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGPFDQAT 614 (985)
Q Consensus 536 g~L~V~v~~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~~~~-~tlnP~Wne~f~f~v~~~~~~~L~v~V~D~d~~~~~dd 614 (985)
|.|+|+|++|+||+..|..|.+||||++++++++.+|+++. +++||+|||.|.|.+..+....|.|+|||+|. .+ |+
T Consensus 1 g~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~~~~~~~~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~-~~-~~ 78 (118)
T cd08681 1 GTLVVVVLKARNLPNKRKLDKQDPYCVLRIGGVTKKTKTDFRGGQHPEWDEELRFEITEDKKPILKVAVFDDDK-RK-PD 78 (118)
T ss_pred CEEEEEEEEccCCCCCCcCCCCCceEEEEECCCccccccccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCC-CC-Cc
Confidence 58999999999999999999999999999999999999875 58999999999999766666799999999998 55 99
Q ss_pred ccceEEEEeeccccCcccceEEEccccccCCcceeEEEEEee
Q 001987 615 SLGHAEINFLKHTSTELADMWVSLEGKLAQSAQSKVHLRIFL 656 (985)
Q Consensus 615 ~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~g~l~l~~~l 656 (985)
+||++.+++.++..+.....|++|..++ ...|+|+|++.|
T Consensus 79 ~iG~~~~~l~~~~~~~~~~~w~~L~~~~--~~~G~i~l~l~f 118 (118)
T cd08681 79 LIGDTEVDLSPALKEGEFDDWYELTLKG--RYAGEVYLELTF 118 (118)
T ss_pred ceEEEEEecHHHhhcCCCCCcEEeccCC--cEeeEEEEEEEC
Confidence 9999999999987776789999998644 367899998864
|
Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr |
| >cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2) | Back alignment and domain information |
|---|
Probab=99.79 E-value=5.9e-19 Score=168.30 Aligned_cols=115 Identities=21% Similarity=0.352 Sum_probs=102.9
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEEC---CEEEEeeeccCCCCCeEeEEEEEEeecCCCCEEEEEEEecCCCCCCC
Q 001987 537 VLTVALVEGVNLASSEMTGLSDPYVVFTCN---GKTRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGPFDQA 613 (985)
Q Consensus 537 ~L~V~v~~a~~L~~~d~~g~~DPyv~v~~~---~~~~kT~~~~~tlnP~Wne~f~f~v~~~~~~~L~v~V~D~d~~~~~d 613 (985)
.|+|+|++|++|+..|..|.+||||+++++ +++++|+++++++||+|||+|.|.+.......|.|+|||+|. + +|
T Consensus 1 ~L~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~vv~~t~nP~Wne~f~f~i~~~~~~~l~v~v~d~d~-~-~~ 78 (119)
T cd04036 1 LLTVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRIQSQVKNVLELTVMDEDY-V-MD 78 (119)
T ss_pred CeEEEEEEeeCCCccCCCCCCCcEEEEEEcCCCCccCccceecCCCCCccceEEEEEeCcccCCEEEEEEEECCC-C-CC
Confidence 378999999999999988999999999996 467899999999999999999999755556689999999998 6 89
Q ss_pred CccceEEEEeeccccCcccceEEEccccccCCcceeEEEEEeee
Q 001987 614 TSLGHAEINFLKHTSTELADMWVSLEGKLAQSAQSKVHLRIFLE 657 (985)
Q Consensus 614 d~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~g~l~l~~~ls 657 (985)
++||++.+++.++..+.....|++|.+ .+.|+|++++.++
T Consensus 79 ~~iG~~~~~l~~l~~g~~~~~~~~L~~----~~~g~l~~~~~~~ 118 (119)
T cd04036 79 DHLGTVLFDVSKLKLGEKVRVTFSLNP----QGKEELEVEFLLE 118 (119)
T ss_pred cccEEEEEEHHHCCCCCcEEEEEECCC----CCCceEEEEEEee
Confidence 999999999999998889999999986 3578899988764
|
A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o |
| >cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Probab=99.79 E-value=9.5e-19 Score=169.23 Aligned_cols=119 Identities=25% Similarity=0.447 Sum_probs=105.2
Q ss_pred eEEEEEEEEeecCCCCCC--CCCCCcEEEEEECCEEEEeeeccCCCCCeEeEEEEEEeecCCCCEEEEEEEecCCCCCCC
Q 001987 536 WVLTVALVEGVNLASSEM--TGLSDPYVVFTCNGKTRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGPFDQA 613 (985)
Q Consensus 536 g~L~V~v~~a~~L~~~d~--~g~~DPyv~v~~~~~~~kT~~~~~tlnP~Wne~f~f~v~~~~~~~L~v~V~D~d~~~~~d 613 (985)
|.|+|+|++|+||+..+. .|.+||||++++++++++|+++++++||.|||.|.|.+.......|.|+|||+|. ++++
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~~~dPyv~v~~~~~~~kT~~~~~t~~P~Wne~f~~~~~~~~~~~l~i~v~d~~~-~~~~ 79 (128)
T cd04024 1 GVLRVHVVEAKDLAAKDRSGKGKSDPYAILSVGAQRFKTQTIPNTLNPKWNYWCEFPIFSAQNQLLKLILWDKDR-FAGK 79 (128)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCcCCeEEEEECCEEEecceecCCcCCccCCcEEEEecCCCCCEEEEEEEECCC-CCCC
Confidence 689999999999999998 8999999999999999999999999999999999999766567899999999998 7899
Q ss_pred CccceEEEEeecccc---CcccceEEEcccccc---CCcceeEEEEEe
Q 001987 614 TSLGHAEINFLKHTS---TELADMWVSLEGKLA---QSAQSKVHLRIF 655 (985)
Q Consensus 614 d~lG~~~i~l~~l~~---~~~~~~w~~L~~~~~---~~~~g~l~l~~~ 655 (985)
++||++.|+|.++.. ......|++|.++.. ...+|+|+|++.
T Consensus 80 ~~lG~~~i~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~~~G~i~l~~~ 127 (128)
T cd04024 80 DYLGEFDIALEEVFADGKTGQSDKWITLKSTRPGKTSVVSGEIHLQFS 127 (128)
T ss_pred CcceEEEEEHHHhhcccccCccceeEEccCcccCccccccceEEEEEE
Confidence 999999999999863 345688999987522 336899999984
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu |
| >cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins | Back alignment and domain information |
|---|
Probab=99.79 E-value=5.3e-19 Score=167.10 Aligned_cols=103 Identities=17% Similarity=0.275 Sum_probs=90.6
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECC-------EEEEeeeccCCCCCeEeEEEEEEeecC---CCCEEEEEEEec
Q 001987 537 VLTVALVEGVNLASSEMTGLSDPYVVFTCNG-------KTRTSSVQLQTCDPQWHDILEFDAMEE---PPSVLDVEVFDF 606 (985)
Q Consensus 537 ~L~V~v~~a~~L~~~d~~g~~DPyv~v~~~~-------~~~kT~~~~~tlnP~Wne~f~f~v~~~---~~~~L~v~V~D~ 606 (985)
.|+|+|++|+||+..+ .|.+||||+|++.+ ++++|+++.+|+||+|||+|.|.+... ....|.|.|||+
T Consensus 1 kL~V~Vi~A~~L~~~d-~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~D~ 79 (120)
T cd08395 1 KVTVKVVAANDLKWQT-TGMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICVKDY 79 (120)
T ss_pred CEEEEEEECcCCCccc-CCCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEEEEe
Confidence 3899999999999988 59999999999832 457899999999999999999997532 335799999999
Q ss_pred CCCCCCCCccceEEEEeeccccCcccceEEEcccc
Q 001987 607 DGPFDQATSLGHAEINFLKHTSTELADMWVSLEGK 641 (985)
Q Consensus 607 d~~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~~~ 641 (985)
|. +++|++||++.++|.++..++..+.|++|...
T Consensus 80 d~-~~~dd~IG~~~l~l~~~~~~~~~~~w~~L~~~ 113 (120)
T cd08395 80 CF-ARDDRLVGVTVLQLRDIAQAGSCACWLPLGRR 113 (120)
T ss_pred cc-cCCCCEEEEEEEEHHHCcCCCcEEEEEECcCc
Confidence 97 68899999999999999998889999999863
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi |
| >cd08375 C2_Intersectin C2 domain present in Intersectin | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.2e-18 Score=169.62 Aligned_cols=117 Identities=26% Similarity=0.354 Sum_probs=102.6
Q ss_pred CeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCEEEEeeeccCCCCCeEeEEEEEEeecCCCCEEEEEEEecCCCCCCCC
Q 001987 535 GWVLTVALVEGVNLASSEMTGLSDPYVVFTCNGKTRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGPFDQAT 614 (985)
Q Consensus 535 ~g~L~V~v~~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~~~~~tlnP~Wne~f~f~v~~~~~~~L~v~V~D~d~~~~~dd 614 (985)
.|.|+|+|++|++|++.|..|.+||||+++++++.++|+++++++||.|||+|.|.+.......|.|+|||+|. +++|+
T Consensus 14 ~G~L~V~Vi~A~~L~~~d~~g~~DPYv~v~~~~~~~kT~vi~~t~nP~Wne~f~f~v~~~~~~~l~i~V~D~d~-~~~d~ 92 (136)
T cd08375 14 IGRLMVVIVEGRDLKPCNSNGKSDPYCEVSMGSQEHKTKVVSDTLNPKWNSSMQFFVKDLEQDVLCITVFDRDF-FSPDD 92 (136)
T ss_pred cEEEEEEEEEeeCCCCCCCCCCcCcEEEEEECCEeeeccccCCCCCCccCceEEEEecCccCCEEEEEEEECCC-CCCCC
Confidence 57999999999999999999999999999999999999999999999999999999765566799999999998 78999
Q ss_pred ccceEEEEeecccc-----CcccceEEEccccccCCcceeEEEEEee
Q 001987 615 SLGHAEINFLKHTS-----TELADMWVSLEGKLAQSAQSKVHLRIFL 656 (985)
Q Consensus 615 ~lG~~~i~l~~l~~-----~~~~~~w~~L~~~~~~~~~g~l~l~~~l 656 (985)
+||++.+++.++.. ......|..|.+ ...|+|+|++.+
T Consensus 93 ~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~----~~~g~i~l~~~~ 135 (136)
T cd08375 93 FLGRTEIRVADILKETKESKGPITKRLLLHE----VPTGEVVVKLDL 135 (136)
T ss_pred eeEEEEEEHHHhccccccCCCcEEEEecccc----ccceeEEEEEEe
Confidence 99999999999775 223345677653 567899999876
|
A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro |
| >cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3 | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.1e-18 Score=166.42 Aligned_cols=116 Identities=18% Similarity=0.233 Sum_probs=100.6
Q ss_pred EEEEEEEeecCCCCC-CCCCCCcEEEEEECCE-EEEeeeccCCCCCeEeEEEEEEeecCCCCEEEEEEEecCCCCCCCCc
Q 001987 538 LTVALVEGVNLASSE-MTGLSDPYVVFTCNGK-TRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGPFDQATS 615 (985)
Q Consensus 538 L~V~v~~a~~L~~~d-~~g~~DPyv~v~~~~~-~~kT~~~~~tlnP~Wne~f~f~v~~~~~~~L~v~V~D~d~~~~~dd~ 615 (985)
|+|+|++|+||++.+ .+|.+||||.++++++ ..+|+++++|+||+|||+|.|.+. .....|.|.|||+|. +++|++
T Consensus 2 l~v~v~~a~~L~~~~~~~g~sDpYv~v~l~~~~~~kT~v~~kt~~P~WnE~F~f~v~-~~~~~l~~~v~d~~~-~~~~~~ 79 (121)
T cd08401 2 LKIKIGEAKNLPPRSGPNKMRDCYCTVNLDQEEVFRTKTVEKSLCPFFGEDFYFEIP-RTFRHLSFYIYDRDV-LRRDSV 79 (121)
T ss_pred eEEEEEEccCCCCCCCCCCCcCcEEEEEECCccEEEeeEEECCCCCccCCeEEEEcC-CCCCEEEEEEEECCC-CCCCce
Confidence 689999999999974 4689999999999875 689999999999999999999964 445799999999998 799999
Q ss_pred cceEEEEeeccccCcccceEEEcccc-ccCCcceeEEEEEe
Q 001987 616 LGHAEINFLKHTSTELADMWVSLEGK-LAQSAQSKVHLRIF 655 (985)
Q Consensus 616 lG~~~i~l~~l~~~~~~~~w~~L~~~-~~~~~~g~l~l~~~ 655 (985)
||++.++++++..+...+.|++|++. .....+|+|||.+.
T Consensus 80 iG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~ 120 (121)
T cd08401 80 IGKVAIKKEDLHKYYGKDTWFPLQPVDADSEVQGKVHLELR 120 (121)
T ss_pred EEEEEEEHHHccCCCCcEeeEEEEccCCCCcccEEEEEEEE
Confidence 99999999999888888999999863 22235899999874
|
RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p |
| >cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.7e-18 Score=165.65 Aligned_cols=114 Identities=28% Similarity=0.492 Sum_probs=102.9
Q ss_pred eEEEEEEEEeecCCCCCC------CCCCCcEEEEEECCEEEEeeeccCCCCCeEeEEEEEEeecCCCCEEEEEEEecCCC
Q 001987 536 WVLTVALVEGVNLASSEM------TGLSDPYVVFTCNGKTRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGP 609 (985)
Q Consensus 536 g~L~V~v~~a~~L~~~d~------~g~~DPyv~v~~~~~~~kT~~~~~tlnP~Wne~f~f~v~~~~~~~L~v~V~D~d~~ 609 (985)
|.|+|+|++|+||+..|. .|.+||||+++++++.++|+++++++||+|||.|.|.+.......|.|+|||+|.
T Consensus 1 g~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~~~~~kT~~~~~t~~P~W~e~f~~~v~~~~~~~l~i~v~d~~~- 79 (121)
T cd08391 1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQTFKSKVIKENLNPKWNEVYEAVVDEVPGQELEIELFDEDP- 79 (121)
T ss_pred CeEEEEEEEccCCcccccccccCCCCCcCCEEEEEECCEeEEccccCCCCCCcccceEEEEeCCCCCCEEEEEEEecCC-
Confidence 579999999999999885 3789999999999999999999999999999999999766667899999999998
Q ss_pred CCCCCccceEEEEeeccccCcccceEEEccccccCCcceeEEEEEe
Q 001987 610 FDQATSLGHAEINFLKHTSTELADMWVSLEGKLAQSAQSKVHLRIF 655 (985)
Q Consensus 610 ~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~g~l~l~~~ 655 (985)
+ +|++||++.+++.++..+...+.|++|.+ ..+|+|||++.
T Consensus 80 ~-~~~~iG~~~i~l~~l~~~~~~~~w~~L~~----~~~G~~~~~~~ 120 (121)
T cd08391 80 D-KDDFLGRLSIDLGSVEKKGFIDEWLPLED----VKSGRLHLKLE 120 (121)
T ss_pred C-CCCcEEEEEEEHHHhcccCccceEEECcC----CCCceEEEEEe
Confidence 5 89999999999999888777899999985 36799999873
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular |
| >cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Probab=99.77 E-value=2e-18 Score=164.68 Aligned_cols=114 Identities=23% Similarity=0.372 Sum_probs=100.4
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECCEEEEeeeccCCCCCeEeEEEEEEeecCCCCEEEEEEEecCCCCCCCCccc
Q 001987 538 LTVALVEGVNLASSEMTGLSDPYVVFTCNGKTRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGPFDQATSLG 617 (985)
Q Consensus 538 L~V~v~~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~~~~~tlnP~Wne~f~f~v~~~~~~~L~v~V~D~d~~~~~dd~lG 617 (985)
|+|+|++|+||+.. .+||||++++++++.+|+++++++||+|||+|.|.+.......|.|+|||+|. + ++++||
T Consensus 2 L~V~Vi~a~~L~~~----~~Dpyv~v~l~~~~~kT~v~~~t~nP~Wne~F~f~~~~~~~~~L~~~v~d~d~-~-~~~~lG 75 (121)
T cd08378 2 LYVRVVKARGLPAN----SNDPVVEVKLGNYKGSTKAIERTSNPEWNQVFAFSKDRLQGSTLEVSVWDKDK-A-KDDFLG 75 (121)
T ss_pred EEEEEEEecCCCcc----cCCCEEEEEECCccccccccCCCCCCccceEEEEEcCCCcCCEEEEEEEeCCC-C-cCceee
Confidence 79999999999987 79999999999999999999999999999999999654467799999999997 5 889999
Q ss_pred eEEEEeeccccCc-----ccceEEEccccccCCcceeEEEEEeee
Q 001987 618 HAEINFLKHTSTE-----LADMWVSLEGKLAQSAQSKVHLRIFLE 657 (985)
Q Consensus 618 ~~~i~l~~l~~~~-----~~~~w~~L~~~~~~~~~g~l~l~~~ls 657 (985)
++.+++.++.... ..+.||+|.+..+...+|.|+|.+++.
T Consensus 76 ~~~i~l~~l~~~~~~~~~~~~~W~~L~~~~~~~~~G~i~l~~~~~ 120 (121)
T cd08378 76 GVCFDLSEVPTRVPPDSPLAPQWYRLEDKKGGRVGGELMLAVWFG 120 (121)
T ss_pred eEEEEhHhCcCCCCCCCCCCcceEEccCCCCCccceEEEEEEEec
Confidence 9999999986532 356899999866556789999999873
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate |
| >cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4 | Back alignment and domain information |
|---|
Probab=99.77 E-value=4.1e-18 Score=163.56 Aligned_cols=117 Identities=28% Similarity=0.502 Sum_probs=102.2
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCEEEEeeeccCCCCCeEeEEEEEEeecCCCCEEEEEEEecCCCCCCCCcc
Q 001987 537 VLTVALVEGVNLASSEMTGLSDPYVVFTCNGKTRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGPFDQATSL 616 (985)
Q Consensus 537 ~L~V~v~~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~~~~~tlnP~Wne~f~f~v~~~~~~~L~v~V~D~d~~~~~dd~l 616 (985)
+|+|+|++|++|+..|.+|.+||||+++++++.++|+++++++||+|||+|.|.+.......|.|+|||+|. ++++++|
T Consensus 1 ~L~v~vi~a~~L~~~d~~~~~DPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~~~v~d~~~-~~~~~~i 79 (123)
T cd04025 1 RLRCHVLEARDLAPKDRNGTSDPFVRVFYNGQTLETSVVKKSCYPRWNEVFEFELMEGADSPLSVEVWDWDL-VSKNDFL 79 (123)
T ss_pred CEEEEEEEeeCCCCCCCCCCcCceEEEEECCEEEeceeecCCCCCccCcEEEEEcCCCCCCEEEEEEEECCC-CCCCcEe
Confidence 489999999999999999999999999999999999999999999999999999755556789999999998 7899999
Q ss_pred ceEEEEeeccccCcccceEEEcccccc-----CCcceeEEEEE
Q 001987 617 GHAEINFLKHTSTELADMWVSLEGKLA-----QSAQSKVHLRI 654 (985)
Q Consensus 617 G~~~i~l~~l~~~~~~~~w~~L~~~~~-----~~~~g~l~l~~ 654 (985)
|++.++|.++......+.|+.|.+... ....|.|++.+
T Consensus 80 G~~~~~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~~G~l~~~~ 122 (123)
T cd04025 80 GKVVFSIQTLQQAKQEEGWFRLLPDPRAEEESGGNLGSLRLKV 122 (123)
T ss_pred EEEEEEHHHcccCCCCCCEEECCCCCCCCccccCceEEEEEEe
Confidence 999999999887777889999986322 23457777764
|
RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a |
| >cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I | Back alignment and domain information |
|---|
Probab=99.76 E-value=4.6e-18 Score=163.88 Aligned_cols=115 Identities=30% Similarity=0.556 Sum_probs=96.7
Q ss_pred EEEEEEEeecCC------CCCcEEEEEECCeEEeecCccCCCCCeEeeEEEEEEec-----CCCceEEEEEEecCCCCCC
Q 001987 6 LYVYVLQGQDLL------AKDSYVKVQIGKHKSKSRILKNNSNPVWNEEFVFRVHN-----IDDEELVVSVFQHNDDSGL 74 (985)
Q Consensus 6 L~V~V~~Ar~L~------~~DPyv~v~l~~~~~kT~v~~~t~nP~wnE~f~f~v~~-----~~~~~L~~~V~D~d~~~~~ 74 (985)
++|+|++|+||+ .+||||+|++++++++|+++++++||+|||+|.|.++. +....|.|.|||++ +
T Consensus 1 ~~V~V~~A~~L~~~d~~g~~dpYv~v~l~~~~~kT~v~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~---~- 76 (126)
T cd08682 1 VQVTVLQARGLLCKGKSGTNDAYVIIQLGKEKYSTSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRN---L- 76 (126)
T ss_pred CEEEEEECcCCcCCCCCcCCCceEEEEECCeeeeeeeecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEcc---c-
Confidence 589999999998 68999999999999999999999999999999999864 36789999999999 4
Q ss_pred CCCCCCeeEEEEEeCccccccCCCCCCCeEEEeecCCCCCCCCccccEEEEEEE
Q 001987 75 FGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTNKDCGKILLTIS 128 (985)
Q Consensus 75 ~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~~G~I~lsl~ 128 (985)
.++|++||++.++|.++.... ......||+|.+... + ..+.+|+|+|+++
T Consensus 77 -~~~d~~iG~~~i~l~~l~~~~-~~~~~~W~~L~~~~~-~-~~~~~Gei~l~~~ 126 (126)
T cd08682 77 -LGLDKFLGQVSIPLNDLDEDK-GRRRTRWFKLESKPG-K-DDKERGEIEVDIQ 126 (126)
T ss_pred -cCCCceeEEEEEEHHHhhccC-CCcccEEEECcCCCC-C-CccccceEEEEeC
Confidence 578999999999999987432 234679999983322 2 2457899999873
|
Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member |
| >cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.4e-18 Score=164.40 Aligned_cols=102 Identities=25% Similarity=0.352 Sum_probs=91.9
Q ss_pred CeEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CEEEEeeeccCCCCCeEeEEEEEEeec---CCCCEEEEEEEec
Q 001987 535 GWVLTVALVEGVNLASSEMTGLSDPYVVFTCN-----GKTRTSSVQLQTCDPQWHDILEFDAME---EPPSVLDVEVFDF 606 (985)
Q Consensus 535 ~g~L~V~v~~a~~L~~~d~~g~~DPyv~v~~~-----~~~~kT~~~~~tlnP~Wne~f~f~v~~---~~~~~L~v~V~D~ 606 (985)
.+.|.|+|++|+||++.| .|.+||||++++. ..+.+|+++++++||+|||+|.|.+.. .....|.|+|||+
T Consensus 12 ~~~L~V~Vi~A~~L~~~~-~~~~DpyVkv~l~~~~~~~~~~kT~v~~~~~nP~wnE~F~f~~~~~~~l~~~~L~~~V~d~ 90 (122)
T cd08381 12 NGTLFVMVMHAKNLPLLD-GSDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEMLVYDGLPVEDLQQRVLQVSVWSH 90 (122)
T ss_pred CCEEEEEEEEeeCCCCCC-CCCCCCEEEEEEeeCCccCCceeCCccCCCCCCCcccEEEEecCChHHhCCCEEEEEEEeC
Confidence 468999999999999999 9999999999996 357899999999999999999998622 3456999999999
Q ss_pred CCCCCCCCccceEEEEeeccccCcccceEEEc
Q 001987 607 DGPFDQATSLGHAEINFLKHTSTELADMWVSL 638 (985)
Q Consensus 607 d~~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L 638 (985)
|. ++++++||++.|+|.++...+..+.||+|
T Consensus 91 d~-~~~~~~lG~~~i~l~~l~~~~~~~~W~~L 121 (122)
T cd08381 91 DS-LVENEFLGGVCIPLKKLDLSQETEKWYPL 121 (122)
T ss_pred CC-CcCCcEEEEEEEeccccccCCCccceEEC
Confidence 98 79999999999999999888888999998
|
There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut |
| >cd08677 C2A_Synaptotagmin-13 C2 domain | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.2e-18 Score=160.48 Aligned_cols=101 Identities=20% Similarity=0.286 Sum_probs=87.4
Q ss_pred CCeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC----EEEEeeeccCCCCCeEeEEEEEEeec--CCCCEEEEEEEecC
Q 001987 534 DGWVLTVALVEGVNLASSEMTGLSDPYVVFTCNG----KTRTSSVQLQTCDPQWHDILEFDAME--EPPSVLDVEVFDFD 607 (985)
Q Consensus 534 ~~g~L~V~v~~a~~L~~~d~~g~~DPyv~v~~~~----~~~kT~~~~~tlnP~Wne~f~f~v~~--~~~~~L~v~V~D~d 607 (985)
..+.|+|+|++|+||+ ..|.+||||++++.. .+++|+++++|+||+|||+|.|.+.. -+...|.|+|||+|
T Consensus 12 ~~~~L~V~vikA~~L~---~~g~sDPYVKv~L~~~~k~~k~kT~v~rktlnPvfnE~f~F~v~~~~l~~~tL~~~V~d~D 88 (118)
T cd08677 12 QKAELHVNILEAENIS---VDAGCECYISGCVSVSEGQKEAQTALKKLALHTQWEEELVFPLPEEESLDGTLTLTLRCCD 88 (118)
T ss_pred cCCEEEEEEEEecCCC---CCCCCCeEEEEEEcCCcCccEEEcceecCCCCCccccEEEEeCCHHHhCCcEEEEEEEeCC
Confidence 3579999999999999 246799999999953 57899999999999999999999643 34568999999999
Q ss_pred CCCCCCCccceEEEEeeccccCcccceEEEc
Q 001987 608 GPFDQATSLGHAEINFLKHTSTELADMWVSL 638 (985)
Q Consensus 608 ~~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L 638 (985)
+ |++||+||++.+++.++..+.....|..|
T Consensus 89 r-fs~~d~IG~v~l~l~~~~~~~~~~~W~~~ 118 (118)
T cd08677 89 R-FSRHSTLGELRLKLADVSMMLGAAQWVDL 118 (118)
T ss_pred C-CCCCceEEEEEEccccccCCccccchhcC
Confidence 9 89999999999999998777677788765
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain |
| >cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein | Back alignment and domain information |
|---|
Probab=99.76 E-value=8.9e-18 Score=161.84 Aligned_cols=118 Identities=22% Similarity=0.337 Sum_probs=102.9
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEEC--CEEEEeeeccCCCCCeEeEEEEEEeecCCCCEEEEEEEecCCCCCCCCc
Q 001987 538 LTVALVEGVNLASSEMTGLSDPYVVFTCN--GKTRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGPFDQATS 615 (985)
Q Consensus 538 L~V~v~~a~~L~~~d~~g~~DPyv~v~~~--~~~~kT~~~~~tlnP~Wne~f~f~v~~~~~~~L~v~V~D~d~~~~~dd~ 615 (985)
|.|+|++|+||+. ..|.+||||+++++ .++++|+++++++||+|||.|.|.+ ......|.|+|||+|. +++|++
T Consensus 1 l~v~v~~A~~L~~--~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~-~~~~~~l~~~v~d~~~-~~~~~~ 76 (126)
T cd08678 1 LLVKNIKANGLSE--AAGSSNPYCVLEMDEPPQKYQSSTQKNTSNPFWDEHFLFEL-SPNSKELLFEVYDNGK-KSDSKF 76 (126)
T ss_pred CEEEEEEecCCCC--CCCCcCCEEEEEECCCCcEEEeEEEecCCCCccCceEEEEe-CCCCCEEEEEEEECCC-CCCCce
Confidence 5799999999998 67999999999997 4678999999999999999999995 4446789999999998 788999
Q ss_pred cceEEEEeeccccCcccceEEEccccc--cCCcceeEEEEEeeecC
Q 001987 616 LGHAEINFLKHTSTELADMWVSLEGKL--AQSAQSKVHLRIFLENN 659 (985)
Q Consensus 616 lG~~~i~l~~l~~~~~~~~w~~L~~~~--~~~~~g~l~l~~~ls~~ 659 (985)
||++.+++.++..+.....|++|.+.. +....|.|++.+.+..+
T Consensus 77 lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~l~l~~~~~~~ 122 (126)
T cd08678 77 LGLAIVPFDELRKNPSGRQIFPLQGRPYEGDSVSGSITVEFLFMEP 122 (126)
T ss_pred EEEEEEeHHHhccCCceeEEEEecCCCCCCCCcceEEEEEEEEecc
Confidence 999999999998887788999998753 34568999999976544
|
The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a |
| >cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1) | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.2e-17 Score=160.83 Aligned_cols=117 Identities=15% Similarity=0.283 Sum_probs=99.5
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEECCE-EEEeeeccCCCCCeEeEEEEEEeecCCCCEEEEEEEecCCCCCCCC
Q 001987 536 WVLTVALVEGVNLASSEMTGLSDPYVVFTCNGK-TRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGPFDQAT 614 (985)
Q Consensus 536 g~L~V~v~~a~~L~~~d~~g~~DPyv~v~~~~~-~~kT~~~~~tlnP~Wne~f~f~v~~~~~~~L~v~V~D~d~~~~~dd 614 (985)
..|+|+|++|+||++. +.+||||++.+++. ..+|++ ++++||.|||.|.|.+.......|.|.|||+|. +++|+
T Consensus 4 ~~L~V~Vi~A~~L~~~---~~~DPYv~v~l~~~~~~kT~v-~~~~nP~WnE~f~f~~~~~~~~~l~v~v~d~~~-~~~d~ 78 (126)
T cd08400 4 RSLQLNVLEAHKLPVK---HVPHPYCVISLNEVKVARTKV-REGPNPVWSEEFVFDDLPPDVNSFTISLSNKAK-RSKDS 78 (126)
T ss_pred eEEEEEEEEeeCCCCC---CCCCeeEEEEECCEeEEEeec-CCCCCCccCCEEEEecCCCCcCEEEEEEEECCC-CCCCC
Confidence 3699999999999975 47999999999874 468887 468999999999998544433589999999998 79999
Q ss_pred ccceEEEEeeccccCcccceEEEccccc--cCCcceeEEEEEeee
Q 001987 615 SLGHAEINFLKHTSTELADMWVSLEGKL--AQSAQSKVHLRIFLE 657 (985)
Q Consensus 615 ~lG~~~i~l~~l~~~~~~~~w~~L~~~~--~~~~~g~l~l~~~ls 657 (985)
+||++.|+|..+..+...+.|++|.+.. +....|+|+|++.|.
T Consensus 79 ~iG~v~i~l~~l~~~~~~~~W~~L~~~~~~~~~~~G~i~l~l~~~ 123 (126)
T cd08400 79 EIAEVTVQLSKLQNGQETDEWYPLSSASPLKGGEWGSLRIRARYS 123 (126)
T ss_pred eEEEEEEEHhHccCCCcccEeEEcccCCCCCCCcCcEEEEEEEEE
Confidence 9999999999998888889999998754 345679999999764
|
RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki |
| >KOG1032 consensus Uncharacterized conserved protein, contains GRAM domain [Function unknown] | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.4e-19 Score=209.18 Aligned_cols=538 Identities=26% Similarity=0.305 Sum_probs=396.0
Q ss_pred hhhhhhcccceeeeehhhHHHHheeeeeeecCCCCCCccccCCCCCCccceeEEeeEEEEechhhhhhhhHhhhcccccC
Q 001987 445 WELASEYFWNFTVVSAGFMILYVVVHILLCEPSKRQGLEFYGLDLPDSFGELISCGILVIQLEQVFNMVGHFVRARLRKG 524 (985)
Q Consensus 445 ~~~~~~~f~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~e~~g~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 524 (985)
++....++..+.++......++.-++..+..+...++.++.|.++|+-.+.+.....++....+......++.+++..++
T Consensus 6 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~q~~~~~~~n~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~k~~~~ 85 (590)
T KOG1032|consen 6 QKSESPKFAKVSVLLSSPLGISVDVAMNVEESAKIQGFPFLGLNLPDVSGSLFSSKVISSDLERSSDRVDSFASAKLHKG 85 (590)
T ss_pred ccccccchhhhhcccccccccccceeccccccccccCcccccCCchhhcccccCCccccccccccccccccccccccCCC
Confidence 34445555666665555555666677777777777888889999998887777666666655555545555566665566
Q ss_pred CCCCccccCCCeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCEEEEeeeccCCCCCeEeEEEEEEeecCCCCEEEEEEE
Q 001987 525 SDHGVKAQGDGWVLTVALVEGVNLASSEMTGLSDPYVVFTCNGKTRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVF 604 (985)
Q Consensus 525 ~d~~~~~~~~~g~L~V~v~~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~~~~~tlnP~Wne~f~f~v~~~~~~~L~v~V~ 604 (985)
.+.+.++.+.++...+..+.+.++.....++.++||..+...++.+...+...+.+|.|++.++|.-...+-....|..+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~n~~~~~~~l~~~~~cal~reillQGrmyis~~~icF~s~i~gw~~~~vIpf 165 (590)
T KOG1032|consen 86 GLKGSPKTEKGYIGSSALLAGVNLASEFLNGVPDPEILLTDYSCALQREILLQGRMYISEEHICFNSNIFGWETKVVIPF 165 (590)
T ss_pred CCCcccccCccccchhhhhcchhhhhhhhhcCCCcceeeeecchhhccccccccccccccceeeecccccCccceeEEee
Confidence 67777777788888899999999998888889999999999999999999999999999999999955555567788888
Q ss_pred ecCCCCCCCCccceEEEEeeccccCcccceEEEccccccCCcceeEEEEEeeecCCCcc---------------------
Q 001987 605 DFDGPFDQATSLGHAEINFLKHTSTELADMWVSLEGKLAQSAQSKVHLRIFLENNNGVE--------------------- 663 (985)
Q Consensus 605 D~d~~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~g~l~l~~~ls~~~~~~--------------------- 663 (985)
+++..+.+..-.|.+...+.-- .......|.+|.+..+..+.-+++++.++.......
T Consensus 166 ~eI~~ikk~~tag~fpn~i~i~-t~~~ky~f~s~~Srda~~~~~~~~~~~~~~~s~s~~~~~~~l~~~~~~~~~~~~~~~ 244 (590)
T KOG1032|consen 166 DEITLIKKTKTAGIFPNAIEIT-TGTTKYIFVSLLSRDATYKLIKLLLHKFLDSSGSPRADSDYLSSVEPEVNDDQQGNV 244 (590)
T ss_pred eeeeeeehhhhccCCCcceEEe-cCCCcceeeecccCccHHHHHHHhhhhcccccCCccccchhcccCCCCcCccccccc
Confidence 9887566666677766655543 455677888887765554433344433322222211
Q ss_pred --------------------hhhhhhhhhhhhccccceeEeeeeEeeeeccccCcceEEEEeccccccccccCCcccccC
Q 001987 664 --------------------TIKEYLTKMEKEVGKKGRLFLSARIVGFYANLFGNKTKFFFLWEDIEDIQILSPSLATVG 723 (985)
Q Consensus 664 --------------------~l~~~l~~lek~i~~~gr~y~s~~~~~f~snif~~~~~~~i~~~di~~i~~~~~~~~~~~ 723 (985)
...++.|.+....+..|+++++....|||+++||..+.+...|++++.++..+.......
T Consensus 245 ~~~~~~s~~~~s~~~~~~e~~~~~~~~~~~~~~~v~~~~~~s~~~~~~~~~lf~d~~~~~~~l~~~~~~~vs~~~~~~~~ 324 (590)
T KOG1032|consen 245 DNSQSPSALQNSFDSPKEEELEHDFSCSLSRLFGVLGRLPFSAPIGAFFSLLFGDNTFFFFFLEDQDEIQVSPIPWKGPR 324 (590)
T ss_pred ccCCCccccccccCCCccccccccccccccccccccccccccccccccceeeccCcceeeeccccccccccccccccCCC
Confidence 233344555555556699999999999999999999999999999999999877643333
Q ss_pred CCeEEEEEecCCCccccCCCCcCCccccEEEEEeeccC-cchhhHHHHHHHHhccCCchhhhhhhhhhccccccc-cccc
Q 001987 724 SPSLVIILWKGRGLDARHGAKSQDEEGRLRFYFQSFVS-FNDASRTIMALWRSRTLTAYQKEQIAEEQQVQEEMS-TAAD 801 (985)
Q Consensus 724 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~k~~F~SF~s-rd~a~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 801 (985)
.......+.-++++++++|.+.-+-+++..++|.++.+ .+..-.+++..|............+...+.+..+.. ....
T Consensus 325 ~~~~~r~~~y~~~l~~~~gPk~t~~~~~~~l~~~~~~~~~~vls~t~~~~vps~~~f~v~~~y~i~~~~~~~~~l~v~~~ 404 (590)
T KOG1032|consen 325 SGILLRTLSYTKGLPAKSGPKSTDCEGTQTLHHQDLEKYFRVLSETLTPDVPSGDSFYVKTRYLISRAGSNSCKLKVSTS 404 (590)
T ss_pred ccceeEeccCCccCCCcCCCccccccceeeEEeccchhhhhhhheeccCCccccceeeeeEEEEEEecCCcceeecceeE
Confidence 34466666677889999999999888999999998877 555555555556554433333333332221111100 0011
Q ss_pred CCCCCCccccccceeEeeeecCChHHHHhccCCCchhHHHHHHcCCcceEEcccccCCCCceeEEEEEEe--ccccCCCc
Q 001987 802 RGSVPNFEDAKMSKVYNAELPISVKALMEMFDGGKLEHQVMEKSGCHNYVTTPWDLVKPGVCERHLSYRF--NRHVSIFG 879 (985)
Q Consensus 802 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~lf~~s~f~~~~~~~~~~~~~~~~~W~~~~~~~~~R~~sy~~--~~~~~~~~ 879 (985)
..-.-..-+..+.++.....++.++.++.+|.+++-....+++-++..+.-++|+.+.+++.+|+.+|+- ++++++..
T Consensus 405 V~~~~~sw~~~~~~~~~~~~k~lv~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~v~~~~~~v~~~~~~~~~~~~i~~~~ 484 (590)
T KOG1032|consen 405 VEWTKSSWDVPVSEIGSNTLKDLVEILEKLLENGEELAKNQEKEDELTYEGSPWEVEKPGGTVRQLSYKEVWNKPISPDK 484 (590)
T ss_pred EEeccCchhhccccccccchhhHHHHHHHHHhccHHHHHhhcccccccccCCCccccCCCceeeeecccccccccccccc
Confidence 1111112344566666667788888888888888888888888888888888999899999999999997 89999999
Q ss_pred eeeeeEEEEeeccCCCcEEEEEEEeeCCCCCCCeEEEEEEEE-EEecCCCCCccEEEEEEEEEEEeeeeehhhhhhchHH
Q 001987 880 GEVTCTQQKSPLASGEGWIVNEVMSLHDVPFDDHFRVHFRYE-IEKSPLAHNACKCAIYIGISWLKSTKFQQRITQNITE 958 (985)
Q Consensus 880 ~~~~~~q~~~~~~~~~~~vv~~~~~~~dVPygd~F~v~~ry~-i~~~~~~~~~~~l~v~~~v~~~k~t~~K~~Ie~~~~~ 958 (985)
.+++..|+..+......|++++.+.+||||||++|.||.||. +.........+++.++..|.|++..+++-..-+.+.-
T Consensus 485 ~~~~~~~i~~l~~~~~~~l~~~i~~l~~~~~g~~~~~h~r~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~~~~k~~~r 564 (590)
T KOG1032|consen 485 REVTLLQVVVLVPLKILWLLNTILFLHDVPFGSYFEVHERYREALDETSKVKTTLVWVSFRIEWLKDIKMEARKIKQILR 564 (590)
T ss_pred ccceeEEEEEEehhhhhHHHHHHhhccCCCCccceeeehhhhhhhcccchhhhhhHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 999999999988888999999999999999999999999994 3333443467788888888888888888888888888
Q ss_pred HHHHHHHHHHHHHHHHHhhcccccC
Q 001987 959 KFTHRLKEMIELVEREILFATQQDA 983 (985)
Q Consensus 959 g~~~~~~~~~~~~~~~i~~~~~~~~ 983 (985)
..++..+.++.+|++.-+.+++.|.
T Consensus 565 ~~~~~l~~~~~~l~~~~~~~~~~d~ 589 (590)
T KOG1032|consen 565 NDQDLLEVLFSLLEKLSQSNSQLDQ 589 (590)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhccC
Confidence 8888888888888888777766653
|
|
| >cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.3e-17 Score=159.25 Aligned_cols=114 Identities=27% Similarity=0.578 Sum_probs=99.0
Q ss_pred EEEEEEEeecCC--CCCcEEEEEECCeEEeecCccCCCCCeEeeEEEEEEecCCCceEEEEEEecCCCCCCCCCCCCeeE
Q 001987 6 LYVYVLQGQDLL--AKDSYVKVQIGKHKSKSRILKNNSNPVWNEEFVFRVHNIDDEELVVSVFQHNDDSGLFGSSGELMG 83 (985)
Q Consensus 6 L~V~V~~Ar~L~--~~DPyv~v~l~~~~~kT~v~~~t~nP~wnE~f~f~v~~~~~~~L~~~V~D~d~~~~~~~~~d~~lG 83 (985)
|+|+|++|+||+ .+||||++++++++.+|+++++++||.|||+|.|.+..+....|.|+|||+| + . ++++||
T Consensus 2 L~V~Vi~a~~L~~~~~Dpyv~v~l~~~~~kT~v~~~t~nP~Wne~F~f~~~~~~~~~L~~~v~d~d---~--~-~~~~lG 75 (121)
T cd08378 2 LYVRVVKARGLPANSNDPVVEVKLGNYKGSTKAIERTSNPEWNQVFAFSKDRLQGSTLEVSVWDKD---K--A-KDDFLG 75 (121)
T ss_pred EEEEEEEecCCCcccCCCEEEEEECCccccccccCCCCCCccceEEEEEcCCCcCCEEEEEEEeCC---C--C-cCceee
Confidence 899999999999 8999999999999999999999999999999999986667899999999999 4 2 889999
Q ss_pred EEEEeCccccccC--CCCCCCeEEEeecCCCCCCCCccccEEEEEEEE
Q 001987 84 RVRVPVSSIAAED--NHMLPPTWFSLETPKTRKFTNKDCGKILLTISL 129 (985)
Q Consensus 84 ~~~i~L~~l~~~~--~~~~~~~W~~L~~~~~~~~~~~~~G~I~lsl~~ 129 (985)
++.++|.++.... +......||+|.+. .+ .+.+|+|+|++.|
T Consensus 76 ~~~i~l~~l~~~~~~~~~~~~~W~~L~~~-~~---~~~~G~i~l~~~~ 119 (121)
T cd08378 76 GVCFDLSEVPTRVPPDSPLAPQWYRLEDK-KG---GRVGGELMLAVWF 119 (121)
T ss_pred eEEEEhHhCcCCCCCCCCCCcceEEccCC-CC---CccceEEEEEEEe
Confidence 9999999997642 22346799999843 22 4578999999987
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate |
| >cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.8e-17 Score=163.85 Aligned_cols=127 Identities=34% Similarity=0.576 Sum_probs=104.8
Q ss_pred EEEEEEEEeecCC------CCCcEEEEEECCeEEeecCccC-CCCCeEeeEEEEEEecCCCceEEEEEEecCCCCCCCCC
Q 001987 5 RLYVYVLQGQDLL------AKDSYVKVQIGKHKSKSRILKN-NSNPVWNEEFVFRVHNIDDEELVVSVFQHNDDSGLFGS 77 (985)
Q Consensus 5 ~L~V~V~~Ar~L~------~~DPyv~v~l~~~~~kT~v~~~-t~nP~wnE~f~f~v~~~~~~~L~~~V~D~d~~~~~~~~ 77 (985)
.|+|+|++|+||+ .+||||+|++++++.+|+++.+ ++||+|||+|.|.+.++....|.|.|||++ . .+
T Consensus 1 ~L~V~Vi~A~~L~~~d~~g~sDPYV~v~l~~~~~kTk~~~~~t~nP~WNE~F~f~v~~~~~~~l~v~V~d~~---~--~~ 75 (150)
T cd04019 1 YLRVTVIEAQDLVPSDKNRVPEVFVKAQLGNQVLRTRPSQTRNGNPSWNEELMFVAAEPFEDHLILSVEDRV---G--PN 75 (150)
T ss_pred CEEEEEEEeECCCCCCCCCCCCeEEEEEECCEEeeeEeccCCCCCCcccCcEEEEecCccCCeEEEEEEEec---C--CC
Confidence 3899999999997 7999999999999999999977 699999999999996666789999999999 4 56
Q ss_pred CCCeeEEEEEeCccccccC-CCCCCCeEEEeecCCC---CCCCCccccEEEEEEEEEecCCee
Q 001987 78 SGELMGRVRVPVSSIAAED-NHMLPPTWFSLETPKT---RKFTNKDCGKILLTISLNGKGHNL 136 (985)
Q Consensus 78 ~d~~lG~~~i~L~~l~~~~-~~~~~~~W~~L~~~~~---~~~~~~~~G~I~lsl~~~~~~~~l 136 (985)
++++||++.+||.++..+. .......||+|.++.. ++...+.+|+|+|.++|.+..+.+
T Consensus 76 ~dd~lG~v~i~L~~l~~~~~~~~~~~~W~~L~~~~~~~~~~k~~k~~g~l~l~i~~~~~~~~~ 138 (150)
T cd04019 76 KDEPLGRAVIPLNDIERRVDDRPVPSRWFSLERPGGAMEQKKKRKFASRIHLRLCLDGGYHVL 138 (150)
T ss_pred CCCeEEEEEEEHHHCcccCCCCccCCceEECcCCCCcccccccCcccccEEEEEEecCcceEe
Confidence 8999999999999987642 2345689999995532 112246789999999998665443
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates |
| >cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4 | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.6e-17 Score=158.78 Aligned_cols=116 Identities=22% Similarity=0.383 Sum_probs=99.8
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECCEE-EEeeeccCCCCCeEeEEEEEEeecCCCCEEEEEEEecCCCCCCCCcc
Q 001987 538 LTVALVEGVNLASSEMTGLSDPYVVFTCNGKT-RTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGPFDQATSL 616 (985)
Q Consensus 538 L~V~v~~a~~L~~~d~~g~~DPyv~v~~~~~~-~kT~~~~~tlnP~Wne~f~f~v~~~~~~~L~v~V~D~d~~~~~dd~l 616 (985)
|.|+|++|++|++.|.+|.+||||++.++++. .+|+++++++||+|||.|.|.+ ......|.|+|||+|. +++|++|
T Consensus 2 l~v~vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~-~~~~~~l~v~v~d~~~-~~~d~~i 79 (121)
T cd04054 2 LYIRIVEGKNLPAKDITGSSDPYCIVKVDNEVIIRTATVWKTLNPFWGEEYTVHL-PPGFHTVSFYVLDEDT-LSRDDVI 79 (121)
T ss_pred EEEEEEEeeCCcCCCCCCCCCceEEEEECCEeeeeeeeEcCCCCCcccceEEEee-CCCCCEEEEEEEECCC-CCCCCEE
Confidence 78999999999999999999999999998764 6999999999999999999995 4445799999999998 7999999
Q ss_pred ceEEEEeeccccC-cccceEEEcccc-ccCCcceeEEEEEe
Q 001987 617 GHAEINFLKHTST-ELADMWVSLEGK-LAQSAQSKVHLRIF 655 (985)
Q Consensus 617 G~~~i~l~~l~~~-~~~~~w~~L~~~-~~~~~~g~l~l~~~ 655 (985)
|++.+++..+..+ ...+.|++|.+. ......|+|+|.+.
T Consensus 80 G~~~~~~~~~~~~~~~~~~W~~L~~~~~~~~~~G~i~l~~~ 120 (121)
T cd04054 80 GKVSLTREVISAHPRGIDGWMNLTEVDPDEEVQGEIHLELS 120 (121)
T ss_pred EEEEEcHHHhccCCCCCCcEEECeeeCCCCccccEEEEEEE
Confidence 9999999887653 347889999863 33345789988764
|
Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. |
| >cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins | Back alignment and domain information |
|---|
Probab=99.75 E-value=8.9e-18 Score=163.93 Aligned_cols=106 Identities=23% Similarity=0.294 Sum_probs=93.9
Q ss_pred CeEEEEEEEEeecCCCCC-CCCCCCcEEEEEEC--C---EEEEeeeccCCCCCeEeEEEEEEeecCCCCEEEEEEE-ecC
Q 001987 535 GWVLTVALVEGVNLASSE-MTGLSDPYVVFTCN--G---KTRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVF-DFD 607 (985)
Q Consensus 535 ~g~L~V~v~~a~~L~~~d-~~g~~DPyv~v~~~--~---~~~kT~~~~~tlnP~Wne~f~f~v~~~~~~~L~v~V~-D~d 607 (985)
.+.|.|+|++|+||++.+ ..|.+||||++++. + .++||+++++|+||+|||+|.|.+. .....|.|+|| |+|
T Consensus 28 ~~~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Llp~~~~~~k~KT~v~kktlnPvfNE~F~f~v~-l~~~~L~v~V~~d~~ 106 (146)
T cd04028 28 KGQLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEGKKCIAKKKTKIARKTLDPLYQQQLVFDVS-PTGKTLQVIVWGDYG 106 (146)
T ss_pred CCEEEEEEEEeeCCCcccCCCCCcCCeEEEEEECCCccccceeceecCCCCCCccCCeEEEEEc-CCCCEEEEEEEeCCC
Confidence 368999999999999874 67899999999994 2 3789999999999999999999965 66779999999 688
Q ss_pred CCCCCCCccceEEEEeeccccCcccceEEEccccc
Q 001987 608 GPFDQATSLGHAEINFLKHTSTELADMWVSLEGKL 642 (985)
Q Consensus 608 ~~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~~~~ 642 (985)
. ++++++||++.|+|+++..+.....||+|.+..
T Consensus 107 ~-~~~~~~iG~~~i~L~~l~~~~~~~~Wy~L~~~~ 140 (146)
T cd04028 107 R-MDKKVFMGVAQILLDDLDLSNLVIGWYKLFPTS 140 (146)
T ss_pred C-CCCCceEEEEEEEcccccCCCCceeEEecCCcc
Confidence 7 789999999999999998787888999998743
|
RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as |
| >cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD) | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.1e-17 Score=165.04 Aligned_cols=119 Identities=21% Similarity=0.275 Sum_probs=101.7
Q ss_pred CeEEEEEEEEeecCCCCC------------------------------CCCCCCcEEEEEECCEE-EEeeeccCCCCCeE
Q 001987 535 GWVLTVALVEGVNLASSE------------------------------MTGLSDPYVVFTCNGKT-RTSSVQLQTCDPQW 583 (985)
Q Consensus 535 ~g~L~V~v~~a~~L~~~d------------------------------~~g~~DPyv~v~~~~~~-~kT~~~~~tlnP~W 583 (985)
.|.|.|+|++|++|+.+| ..|.+||||+|++++.+ .+|+++++++||+|
T Consensus 6 hG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~~~~~rT~v~~~~~nP~W 85 (158)
T cd04015 6 HGTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAGARVARTRVIENSENPVW 85 (158)
T ss_pred eeeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECCeEeeEEEEeCCCCCCcc
Confidence 479999999999999987 35779999999999755 69999999999999
Q ss_pred eEEEEEEeecCCCCEEEEEEEecCCCCCCCCccceEEEEeeccccCcccceEEEcccccc--CCcceeEEEEEee
Q 001987 584 HDILEFDAMEEPPSVLDVEVFDFDGPFDQATSLGHAEINFLKHTSTELADMWVSLEGKLA--QSAQSKVHLRIFL 656 (985)
Q Consensus 584 ne~f~f~v~~~~~~~L~v~V~D~d~~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~~~~~--~~~~g~l~l~~~l 656 (985)
||+|.|.+ ..+...|.|.|||+|. ++ +++||++.|++.++..+...+.|++|.+..+ ....|+|||++.|
T Consensus 86 nE~F~~~~-~~~~~~l~~~V~d~d~-~~-~~~IG~~~i~l~~l~~g~~~~~w~~L~~~~~~~~~~~~~l~v~~~f 157 (158)
T cd04015 86 NESFHIYC-AHYASHVEFTVKDNDV-VG-AQLIGRAYIPVEDLLSGEPVEGWLPILDSNGKPPKPGAKIRVSLQF 157 (158)
T ss_pred ceEEEEEc-cCCCCEEEEEEEeCCC-cC-CcEEEEEEEEhHHccCCCCcceEEECcCCCCCCCCCCCEEEEEEEE
Confidence 99999985 4556789999999997 54 6899999999999988888899999987432 2346789998865
|
PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic |
| >cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.7e-17 Score=160.00 Aligned_cols=118 Identities=22% Similarity=0.433 Sum_probs=102.5
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECC---EEEEeeeccCCCCCeEeEEEEEEeecCCCCEEEEEEEecCCCCCCC
Q 001987 537 VLTVALVEGVNLASSEMTGLSDPYVVFTCNG---KTRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGPFDQA 613 (985)
Q Consensus 537 ~L~V~v~~a~~L~~~d~~g~~DPyv~v~~~~---~~~kT~~~~~tlnP~Wne~f~f~v~~~~~~~L~v~V~D~d~~~~~d 613 (985)
.|+|+|++|++|+..+.+|.+||||++.+++ +..+|+++++++||.|||+|.|.+.......|.|+|||+|. ++++
T Consensus 2 ~~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~~~~~t~~P~Wne~f~f~i~~~~~~~L~i~v~d~d~-~~~~ 80 (126)
T cd04043 2 LFTIRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEVPAGEPLWISATVWDRSF-VGKH 80 (126)
T ss_pred EEEEEEEEeECCCCCCCCCCCCceEEEEECCCCeeeecccEecCCCCCcccceEEEEcCCCCCCEEEEEEEECCC-CCCC
Confidence 6899999999999999999999999999863 46899999999999999999999655556799999999998 6899
Q ss_pred CccceEEEEeecccc---CcccceEEEccccccCCcceeEEEEEeeecCCC
Q 001987 614 TSLGHAEINFLKHTS---TELADMWVSLEGKLAQSAQSKVHLRIFLENNNG 661 (985)
Q Consensus 614 d~lG~~~i~l~~l~~---~~~~~~w~~L~~~~~~~~~g~l~l~~~ls~~~~ 661 (985)
++||++.++|..+.. +...+.|++|.+ +|+++|++.+...++
T Consensus 81 ~~iG~~~i~l~~~~~~~~~~~~~~w~~l~~------~g~i~l~~~~~~~~~ 125 (126)
T cd04043 81 DLCGRASLKLDPKRFGDDGLPREIWLDLDT------QGRLLLRVSMEGERD 125 (126)
T ss_pred ceEEEEEEecCHHHcCCCCCCceEEEEcCC------CCeEEEEEEEeeecc
Confidence 999999999987543 345788999984 689999998877654
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap |
| >cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.5e-17 Score=157.11 Aligned_cols=117 Identities=25% Similarity=0.437 Sum_probs=102.8
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEECCEEEEeeeccCCCCCeEeEEEEEEeecCCCCEEEEEEEecCCCCCCCCc
Q 001987 536 WVLTVALVEGVNLASSEMTGLSDPYVVFTCNGKTRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGPFDQATS 615 (985)
Q Consensus 536 g~L~V~v~~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~~~~~tlnP~Wne~f~f~v~~~~~~~L~v~V~D~d~~~~~dd~ 615 (985)
|.|+|+|++|+||+..+..+.+||||++++++...+|+++++++||.|||+|.|.+ ......|.|+|||+|. ++++++
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~~~~-~~~~~~l~~~v~d~~~-~~~~~~ 78 (119)
T cd08377 1 GFLQVKVIRASGLAAADIGGKSDPFCVLELVNARLQTHTIYKTLNPEWNKIFTFPI-KDIHDVLEVTVYDEDK-DKKPEF 78 (119)
T ss_pred CEEEEEEEeeeCCCCCCCCCCCCcEEEEEECCEeeecceecCCcCCccCcEEEEEe-cCcCCEEEEEEEECCC-CCCCce
Confidence 68999999999999999999999999999999999999999999999999999995 4556799999999998 789999
Q ss_pred cceEEEEeeccccCcccceEEEccccc-cCCcceeEEEEEee
Q 001987 616 LGHAEINFLKHTSTELADMWVSLEGKL-AQSAQSKVHLRIFL 656 (985)
Q Consensus 616 lG~~~i~l~~l~~~~~~~~w~~L~~~~-~~~~~g~l~l~~~l 656 (985)
||++.+++.++..+ ...|++|.... ....+|+|+|.+.+
T Consensus 79 iG~~~~~l~~~~~~--~~~~~~l~~~~~~~~~~G~i~l~~~~ 118 (119)
T cd08377 79 LGKVAIPLLSIKNG--ERKWYALKDKKLRTRAKGSILLEMDV 118 (119)
T ss_pred eeEEEEEHHHCCCC--CceEEECcccCCCCceeeEEEEEEEe
Confidence 99999999998654 46899998653 33468999998754
|
MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran |
| >cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42) | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.6e-17 Score=161.86 Aligned_cols=118 Identities=21% Similarity=0.339 Sum_probs=100.8
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCE-------EEEeeeccCCCCCeEeEEEEEEeecCCCCEEEEEEEecCCC
Q 001987 537 VLTVALVEGVNLASSEMTGLSDPYVVFTCNGK-------TRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGP 609 (985)
Q Consensus 537 ~L~V~v~~a~~L~~~d~~g~~DPyv~v~~~~~-------~~kT~~~~~tlnP~Wne~f~f~v~~~~~~~L~v~V~D~d~~ 609 (985)
.|+|+|++|+||+..|..|.+||||++++++. ..+|+++++++||+|||+|.|.+ ......|.|+|||+|.
T Consensus 1 ~L~v~Vi~a~~L~~~d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~-~~~~~~l~~~v~d~~~- 78 (133)
T cd04033 1 ILRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFRV-NPREHRLLFEVFDENR- 78 (133)
T ss_pred CEEEEEEEeECCCcccCCCCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEEE-cCCCCEEEEEEEECCC-
Confidence 37999999999999999999999999999754 57999999999999999999995 4446789999999998
Q ss_pred CCCCCccceEEEEeeccccCcc------cceEEEccccc-cCCcceeEEEEEee
Q 001987 610 FDQATSLGHAEINFLKHTSTEL------ADMWVSLEGKL-AQSAQSKVHLRIFL 656 (985)
Q Consensus 610 ~~~dd~lG~~~i~l~~l~~~~~------~~~w~~L~~~~-~~~~~g~l~l~~~l 656 (985)
+++|++||++.+++.++..... ...|++|++.. .....|.|+|.+.+
T Consensus 79 ~~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~G~l~~~~~~ 132 (133)
T cd04033 79 LTRDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPRSSKSRVKGHLRLYMAY 132 (133)
T ss_pred CCCCCeeEEEEEEHHHCCCcCccccccccchheeeeecCCCCcceeEEEEEEee
Confidence 7899999999999999876543 45899999642 22358999999865
|
Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3) | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.1e-17 Score=164.41 Aligned_cols=102 Identities=24% Similarity=0.317 Sum_probs=89.2
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----EEEEeeeccCCCCCeEeEEEEEEeec--------------C-CC
Q 001987 537 VLTVALVEGVNLASSEMTGLSDPYVVFTCNG-----KTRTSSVQLQTCDPQWHDILEFDAME--------------E-PP 596 (985)
Q Consensus 537 ~L~V~v~~a~~L~~~d~~g~~DPyv~v~~~~-----~~~kT~~~~~tlnP~Wne~f~f~v~~--------------~-~~ 596 (985)
.|+|+|++|+||+. .+|.+||||++++.+ ++++|+++++|+||+|||.|.|.+.. + ..
T Consensus 1 kL~V~Vi~ArnL~~--~~g~sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~~ 78 (148)
T cd04010 1 KLSVRVIECSDLAL--KNGTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAEK 78 (148)
T ss_pred CEEEEEEeCcCCCC--CCCCCCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEecccccccccccCCcccccE
Confidence 37999999999998 579999999999975 67899999999999999999999741 1 23
Q ss_pred CEEEEEEEecCCCCCCCCccceEEEEeeccccC-cccceEEEcccc
Q 001987 597 SVLDVEVFDFDGPFDQATSLGHAEINFLKHTST-ELADMWVSLEGK 641 (985)
Q Consensus 597 ~~L~v~V~D~d~~~~~dd~lG~~~i~l~~l~~~-~~~~~w~~L~~~ 641 (985)
..|.|.|||+|. +++|+|||++.|+|..+..+ .....||+|.+.
T Consensus 79 ~~L~i~V~d~~~-~~~ddfLG~v~i~l~~l~~~~~~~~~W~~L~~~ 123 (148)
T cd04010 79 LELRVDLWHASM-GGGDVFLGEVRIPLRGLDLQAGSHQAWYFLQPR 123 (148)
T ss_pred EEEEEEEEcCCC-CCCCceeEEEEEecccccccCCcCcceeecCCc
Confidence 579999999998 68999999999999998876 667899999864
|
RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain |
| >cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.4e-17 Score=159.16 Aligned_cols=115 Identities=24% Similarity=0.436 Sum_probs=101.5
Q ss_pred CeEEEEEEEEeecCCCCCCC----------CCCCcEEEEEECCEE-EEeeeccCCCCCeEeEEEEEEeecCCCCEEEEEE
Q 001987 535 GWVLTVALVEGVNLASSEMT----------GLSDPYVVFTCNGKT-RTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEV 603 (985)
Q Consensus 535 ~g~L~V~v~~a~~L~~~d~~----------g~~DPyv~v~~~~~~-~kT~~~~~tlnP~Wne~f~f~v~~~~~~~L~v~V 603 (985)
.|.|+|+|++|++|+..|.. |.+||||++.++++. .+|+++++++||.|||+|.|.+. ....|.|.|
T Consensus 3 ~g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~--~~~~l~~~v 80 (132)
T cd04014 3 TGTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDDTHIGKTSTKPKTNSPVWNEEFTTEVH--NGRNLELTV 80 (132)
T ss_pred ceEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEECCEEEeEEeEcCCCCCCCcceeEEEEcC--CCCEEEEEE
Confidence 37899999999999998863 689999999999865 69999999999999999999964 557999999
Q ss_pred EecCCCCCCCCccceEEEEeecccc--CcccceEEEccccccCCcceeEEEEEeeec
Q 001987 604 FDFDGPFDQATSLGHAEINFLKHTS--TELADMWVSLEGKLAQSAQSKVHLRIFLEN 658 (985)
Q Consensus 604 ~D~d~~~~~dd~lG~~~i~l~~l~~--~~~~~~w~~L~~~~~~~~~g~l~l~~~ls~ 658 (985)
||+|. ++++++||++.++|.++.. +...+.|++|. .+|+|+|++.+.+
T Consensus 81 ~d~~~-~~~~~~iG~~~i~l~~l~~~~~~~~~~w~~L~------~~G~l~l~~~~~~ 130 (132)
T cd04014 81 FHDAA-IGPDDFVANCTISFEDLIQRGSGSFDLWVDLE------PQGKLHVKIELKG 130 (132)
T ss_pred EeCCC-CCCCceEEEEEEEhHHhcccCCCcccEEEEcc------CCcEEEEEEEEec
Confidence 99998 7899999999999999887 56789999998 4689999998765
|
A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that |
| >cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.5e-17 Score=154.89 Aligned_cols=101 Identities=26% Similarity=0.307 Sum_probs=90.9
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCEEEEeeeccCCCCCeEeEEEEEEeecCCCCEEEEEEEecCCCCCCCCcc
Q 001987 537 VLTVALVEGVNLASSEMTGLSDPYVVFTCNGKTRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGPFDQATSL 616 (985)
Q Consensus 537 ~L~V~v~~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~~~~~tlnP~Wne~f~f~v~~~~~~~L~v~V~D~d~~~~~dd~l 616 (985)
.|.|+|++|+||+..+..|.+||||+++++++.++|+++++++||+|||.|.|.+..+....|.|+|||++. +++|
T Consensus 1 ~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~v~v~d~~~----~~~i 76 (105)
T cd04050 1 LLFVYLDSAKNLPLAKSTKEPSPYVELTVGKTTQKSKVKERTNNPVWEEGFTFLVRNPENQELEIEVKDDKT----GKSL 76 (105)
T ss_pred CEEEEEeeecCCCCcccCCCCCcEEEEEECCEEEeCccccCCCCCcccceEEEEeCCCCCCEEEEEEEECCC----CCcc
Confidence 378999999999999989999999999999999999999999999999999999766567799999999873 7899
Q ss_pred ceEEEEeeccccCc--ccceEEEcccc
Q 001987 617 GHAEINFLKHTSTE--LADMWVSLEGK 641 (985)
Q Consensus 617 G~~~i~l~~l~~~~--~~~~w~~L~~~ 641 (985)
|++.++|.++.... ..+.||+|.++
T Consensus 77 G~~~i~l~~l~~~~~~~~~~w~~L~~~ 103 (105)
T cd04050 77 GSLTLPLSELLKEPDLTLDQPFPLDNS 103 (105)
T ss_pred EEEEEEHHHhhccccceeeeeEecCCC
Confidence 99999999986543 57899999863
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm |
| >cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.1e-17 Score=158.36 Aligned_cols=116 Identities=28% Similarity=0.463 Sum_probs=97.5
Q ss_pred EEEEEEEEeecCC------CCCcEEEEEECCeEEeecCccCCCCCeEeeEEEEEEecC---CCceEEEEEEecCCCCCCC
Q 001987 5 RLYVYVLQGQDLL------AKDSYVKVQIGKHKSKSRILKNNSNPVWNEEFVFRVHNI---DDEELVVSVFQHNDDSGLF 75 (985)
Q Consensus 5 ~L~V~V~~Ar~L~------~~DPyv~v~l~~~~~kT~v~~~t~nP~wnE~f~f~v~~~---~~~~L~~~V~D~d~~~~~~ 75 (985)
+|.|+|++|+||+ .+||||+|+++++++||+++++++||.|||+|.|.+..+ ....|.|+|||.+ +
T Consensus 1 ~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~~~rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~---~-- 75 (127)
T cd04022 1 KLVVEVVDAQDLMPKDGQGSSSAYVELDFDGQKKRTRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDR---R-- 75 (127)
T ss_pred CeEEEEEEeeCCCCCCCCCCcCcEEEEEECCEEecceeEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCC---C--
Confidence 5899999999998 689999999999999999999999999999999998532 3478999999998 4
Q ss_pred CC-CCCeeEEEEEeCccccccCCCCCCCeEEEeecCCCCCCCCccccEEEEEEEEE
Q 001987 76 GS-SGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTNKDCGKILLTISLN 130 (985)
Q Consensus 76 ~~-~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~~G~I~lsl~~~ 130 (985)
.+ +++|||++.++|.++.... .....||+|+++ ... ...+|+|+|++.+.
T Consensus 76 ~~~~d~~lG~v~i~l~~l~~~~--~~~~~w~~L~~~-~~~--~~~~G~l~l~~~~~ 126 (127)
T cd04022 76 SGRRRSFLGRVRISGTSFVPPS--EAVVQRYPLEKR-GLF--SRVRGEIGLKVYIT 126 (127)
T ss_pred CcCCCCeeeEEEEcHHHcCCCC--CccceEeEeeeC-CCC--CCccEEEEEEEEEc
Confidence 44 7999999999999998432 346799999943 222 45789999999874
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates |
| >cd08677 C2A_Synaptotagmin-13 C2 domain | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.4e-17 Score=155.11 Aligned_cols=97 Identities=18% Similarity=0.343 Sum_probs=84.5
Q ss_pred CcEEEEEEEEeecCC---CCCcEEEEEECC----eEEeecCccCCCCCeEeeEEEEEEe--cCCCceEEEEEEecCCCCC
Q 001987 3 STRLYVYVLQGQDLL---AKDSYVKVQIGK----HKSKSRILKNNSNPVWNEEFVFRVH--NIDDEELVVSVFQHNDDSG 73 (985)
Q Consensus 3 ~~~L~V~V~~Ar~L~---~~DPyv~v~l~~----~~~kT~v~~~t~nP~wnE~f~f~v~--~~~~~~L~~~V~D~d~~~~ 73 (985)
.++|.|+|++|+||+ .+||||+|++.. .+.+|+++++|+||+|||+|.|+|+ +.....|.|+|||+| +
T Consensus 13 ~~~L~V~vikA~~L~~~g~sDPYVKv~L~~~~k~~k~kT~v~rktlnPvfnE~f~F~v~~~~l~~~tL~~~V~d~D---r 89 (118)
T cd08677 13 KAELHVNILEAENISVDAGCECYISGCVSVSEGQKEAQTALKKLALHTQWEEELVFPLPEEESLDGTLTLTLRCCD---R 89 (118)
T ss_pred CCEEEEEEEEecCCCCCCCCCeEEEEEEcCCcCccEEEcceecCCCCCccccEEEEeCCHHHhCCcEEEEEEEeCC---C
Confidence 578999999999998 799999999974 4689999999999999999999987 678899999999999 6
Q ss_pred CCCCCCCeeEEEEEeCccccccCCCCCCCeEEEe
Q 001987 74 LFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSL 107 (985)
Q Consensus 74 ~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L 107 (985)
.+++++||++.+++.++..... ...|..|
T Consensus 90 --fs~~d~IG~v~l~l~~~~~~~~---~~~W~~~ 118 (118)
T cd08677 90 --FSRHSTLGELRLKLADVSMMLG---AAQWVDL 118 (118)
T ss_pred --CCCCceEEEEEEccccccCCcc---ccchhcC
Confidence 5899999999999998865422 4467543
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain |
| >cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins | Back alignment and domain information |
|---|
Probab=99.73 E-value=4.6e-17 Score=157.01 Aligned_cols=115 Identities=23% Similarity=0.443 Sum_probs=98.8
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCEEEEeeeccCCCCCeEeEEEEEEeecCCCCEEEEEEEecCCC-------
Q 001987 537 VLTVALVEGVNLASSEMTGLSDPYVVFTCNGKTRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGP------- 609 (985)
Q Consensus 537 ~L~V~v~~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~~~~~tlnP~Wne~f~f~v~~~~~~~L~v~V~D~d~~------- 609 (985)
.|+|+|++|++|+..|..|.+||||+++++++..+|+++++++||.|||.|.|.+ ..+...|.|+|||+|..
T Consensus 2 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~~v~~t~~P~Wne~f~f~~-~~~~~~l~i~v~d~d~~~~~~~~~ 80 (127)
T cd04027 2 KISITVVCAQGLIAKDKTGTSDPYVTVQVGKTKKRTKTIPQNLNPVWNEKFHFEC-HNSSDRIKVRVWDEDDDIKSRLKQ 80 (127)
T ss_pred eEEEEEEECcCCcCCCCCCCcCcEEEEEECCEeeecceecCCCCCccceEEEEEe-cCCCCEEEEEEEECCCCcccccce
Confidence 5899999999999999999999999999999999999999999999999999985 34467899999999951
Q ss_pred ---CCCCCccceEEEEeeccccCcccceEEEccccccC-CcceeEEEEE
Q 001987 610 ---FDQATSLGHAEINFLKHTSTELADMWVSLEGKLAQ-SAQSKVHLRI 654 (985)
Q Consensus 610 ---~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~-~~~g~l~l~~ 654 (985)
.+.+++||++.+++.++. ...+.|++|.+..+. ..+|+|.|++
T Consensus 81 ~~~~~~~~~iG~~~i~l~~~~--~~~~~w~~L~~~~~~~~~~G~i~~~~ 127 (127)
T cd04027 81 KFTRESDDFLGQTIIEVRTLS--GEMDVWYNLEKRTDKSAVSGAIRLHI 127 (127)
T ss_pred eccccCCCcceEEEEEhHHcc--CCCCeEEECccCCCCCcEeEEEEEEC
Confidence 146899999999999874 446899999975443 4588888874
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev |
| >cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5 | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.1e-17 Score=158.65 Aligned_cols=105 Identities=24% Similarity=0.340 Sum_probs=92.6
Q ss_pred CCeEEEEEEEEeecCCCCCC-CCCCCcEEEEEEC-----CEEEEeeeccCCCCCeEeEEEEEEeecC--CCCEEEEEEEe
Q 001987 534 DGWVLTVALVEGVNLASSEM-TGLSDPYVVFTCN-----GKTRTSSVQLQTCDPQWHDILEFDAMEE--PPSVLDVEVFD 605 (985)
Q Consensus 534 ~~g~L~V~v~~a~~L~~~d~-~g~~DPyv~v~~~-----~~~~kT~~~~~tlnP~Wne~f~f~v~~~--~~~~L~v~V~D 605 (985)
..+.|.|+|++|+||++.|. .|.+||||++++. ..++||+++++++||+|||+|.|.+... ....|.|+|||
T Consensus 13 ~~~~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~l~~~~L~~~V~d 92 (125)
T cd04029 13 KTQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKRKTSIKRNTTNPVYNETLKYSISHSQLETRTLQLSVWH 92 (125)
T ss_pred CCCeEEEEEEEecCCCccCCCCCCCCcEEEEEEEcCCccccceEeeeeeCCCCCcccceEEEECCHHHhCCCEEEEEEEE
Confidence 45689999999999999875 5899999999994 2467999999999999999999996432 35689999999
Q ss_pred cCCCCCCCCccceEEEEeeccccCcccceEEEcc
Q 001987 606 FDGPFDQATSLGHAEINFLKHTSTELADMWVSLE 639 (985)
Q Consensus 606 ~d~~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~ 639 (985)
+|. ++++++||++.|+|.++...+..+.|++|.
T Consensus 93 ~~~-~~~~~~lG~~~i~l~~~~~~~~~~~w~~l~ 125 (125)
T cd04029 93 YDR-FGRNTFLGEVEIPLDSWNFDSQHEECLPLH 125 (125)
T ss_pred CCC-CCCCcEEEEEEEeCCcccccCCcccEEECc
Confidence 998 799999999999999999888899999984
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2 |
| >cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2 | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.6e-17 Score=159.57 Aligned_cols=104 Identities=24% Similarity=0.387 Sum_probs=92.1
Q ss_pred CeEEEEEEEEeecCCCCCCC-CCCCcEEEEEEC-----CEEEEeeeccCCCCCeEeEEEEEEeec--CCCCEEEEEEEec
Q 001987 535 GWVLTVALVEGVNLASSEMT-GLSDPYVVFTCN-----GKTRTSSVQLQTCDPQWHDILEFDAME--EPPSVLDVEVFDF 606 (985)
Q Consensus 535 ~g~L~V~v~~a~~L~~~d~~-g~~DPyv~v~~~-----~~~~kT~~~~~tlnP~Wne~f~f~v~~--~~~~~L~v~V~D~ 606 (985)
.+.|.|+|++|+||+++|.. |.+||||++++. ..+++|+++++++||+|||+|.|.+.. .....|.|+|||+
T Consensus 14 ~~~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~~~~~~~~kT~v~~~t~nP~~nE~f~f~v~~~~l~~~~L~~~V~d~ 93 (125)
T cd08393 14 LRELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKKTLNPVFNETLRYKVEREELPTRVLNLSVWHR 93 (125)
T ss_pred CCEEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcCCCccccccCccCcCCCCCccCceEEEECCHHHhCCCEEEEEEEeC
Confidence 45899999999999999976 899999999994 245799999999999999999999642 2346899999999
Q ss_pred CCCCCCCCccceEEEEeeccccCcccceEEEcc
Q 001987 607 DGPFDQATSLGHAEINFLKHTSTELADMWVSLE 639 (985)
Q Consensus 607 d~~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~ 639 (985)
|. ++++++||++.|+|.++...+....|++|+
T Consensus 94 ~~-~~~~~~iG~~~i~L~~~~~~~~~~~W~~L~ 125 (125)
T cd08393 94 DS-LGRNSFLGEVEVDLGSWDWSNTQPTWYPLQ 125 (125)
T ss_pred CC-CCCCcEeEEEEEecCccccCCCCcceEECc
Confidence 98 799999999999999998887888999984
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety |
| >cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.72 E-value=6e-17 Score=157.98 Aligned_cols=117 Identities=22% Similarity=0.360 Sum_probs=98.8
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCEEEEeeeccCCCCCeEeEEEEEEeecC---------CCCEEEEEEEecC
Q 001987 537 VLTVALVEGVNLASSEMTGLSDPYVVFTCNGKTRTSSVQLQTCDPQWHDILEFDAMEE---------PPSVLDVEVFDFD 607 (985)
Q Consensus 537 ~L~V~v~~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~~~~~tlnP~Wne~f~f~v~~~---------~~~~L~v~V~D~d 607 (985)
.|+|+|++|++|+.+|..|.+||||++++++++.+|+++++|+||.|||.|.|.+... ....|.|+|||+|
T Consensus 2 ~l~v~V~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~d~d 81 (135)
T cd04017 2 QLRAYIYQARDLLAADKSGLSDPFARVSFLNQSQETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELFDQD 81 (135)
T ss_pred EEEEEEEEeecCcCCCCCCCCCCEEEEEECCeeeEeeeEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEEeCc
Confidence 6899999999999999999999999999999999999999999999999999985322 1257999999999
Q ss_pred CCCCCCCccceEEE-Eeecccc---CcccceEEEccccccCCcceeEEEEEee
Q 001987 608 GPFDQATSLGHAEI-NFLKHTS---TELADMWVSLEGKLAQSAQSKVHLRIFL 656 (985)
Q Consensus 608 ~~~~~dd~lG~~~i-~l~~l~~---~~~~~~w~~L~~~~~~~~~g~l~l~~~l 656 (985)
. +++|++||++.+ ++..+.. ......|++|...+ ...|+|.|.+.+
T Consensus 82 ~-~~~d~~iG~~~i~~~~~~~~~~~~~~~~~W~~L~~~~--~~~Geil~~~~~ 131 (135)
T cd04017 82 S-VGKDEFLGRSVAKPLVKLDLEEDFPPKLQWFPIYKGG--QSAGELLAAFEL 131 (135)
T ss_pred C-CCCCccceEEEeeeeeecccCCCCCCCceEEEeecCC--CchhheeEEeEE
Confidence 8 789999999997 4444433 35678999998543 367889988865
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme |
| >cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Probab=99.72 E-value=7.3e-17 Score=154.38 Aligned_cols=114 Identities=29% Similarity=0.532 Sum_probs=97.7
Q ss_pred EEEEEEEEeecCC------CCCcEEEEEECC-eEEeecCccCCCCCeEeeEEEEEEecCCCceEEEEEEecCCCCCCCCC
Q 001987 5 RLYVYVLQGQDLL------AKDSYVKVQIGK-HKSKSRILKNNSNPVWNEEFVFRVHNIDDEELVVSVFQHNDDSGLFGS 77 (985)
Q Consensus 5 ~L~V~V~~Ar~L~------~~DPyv~v~l~~-~~~kT~v~~~t~nP~wnE~f~f~v~~~~~~~L~~~V~D~d~~~~~~~~ 77 (985)
+|+|+|++|+||+ .+||||++.+++ ..++|+++++++||.|||+|.|.+.. ....|.|+|||++ . .+
T Consensus 1 ~L~v~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~-~~~~l~~~v~D~d---~--~~ 74 (121)
T cd04042 1 QLDIHLKEGRNLAARDRGGTSDPYVKFKYGGKTVYKSKTIYKNLNPVWDEKFTLPIED-VTQPLYIKVFDYD---R--GL 74 (121)
T ss_pred CeEEEEEEeeCCCCcCCCCCCCCeEEEEECCEEEEEeeeccCCCCCccceeEEEEecC-CCCeEEEEEEeCC---C--CC
Confidence 5899999999998 799999999987 56899999999999999999999843 4688999999999 4 57
Q ss_pred CCCeeEEEEEeCccccccCCCCCCCeEEEeecCCCCCCCCccccEEEEEEEEEe
Q 001987 78 SGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTNKDCGKILLTISLNG 131 (985)
Q Consensus 78 ~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~~G~I~lsl~~~~ 131 (985)
++++||++.++|.++..+ .....|++|.++.. .+..|+|+|.++|.|
T Consensus 75 ~~~~iG~~~~~l~~l~~~---~~~~~~~~L~~~~~----~~~~G~l~l~~~~~~ 121 (121)
T cd04042 75 TDDFMGSAFVDLSTLELN---KPTEVKLKLEDPNS----DEDLGYISLVVTLTP 121 (121)
T ss_pred CCcceEEEEEEHHHcCCC---CCeEEEEECCCCCC----ccCceEEEEEEEECC
Confidence 999999999999999865 24678999984332 356899999999854
|
MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein |
| >cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD) | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.6e-17 Score=152.54 Aligned_cols=94 Identities=15% Similarity=0.211 Sum_probs=83.6
Q ss_pred eEEEEEEEEeecCCCCCCC----CCCCcEEEEEECCEEEEeeeccCCCCCeEeEEEEEEeecC-CCCEEEEEEEecCCCC
Q 001987 536 WVLTVALVEGVNLASSEMT----GLSDPYVVFTCNGKTRTSSVQLQTCDPQWHDILEFDAMEE-PPSVLDVEVFDFDGPF 610 (985)
Q Consensus 536 g~L~V~v~~a~~L~~~d~~----g~~DPyv~v~~~~~~~kT~~~~~tlnP~Wne~f~f~v~~~-~~~~L~v~V~D~d~~~ 610 (985)
|+|.|+|++|++|++.|.. +.+||||+|+++++++||+++++++||+|||.|.|.+... ....|.|+|||+|. +
T Consensus 1 g~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~~~~~kT~v~~~t~nPvWne~f~f~v~~~~~~~~L~~~V~D~d~-~ 79 (108)
T cd04039 1 GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISFGRRVFRTSWRRHTLNPVFNERLAFEVYPHEKNFDIQFKVLDKDK-F 79 (108)
T ss_pred CEEEEEEEeeeCCCCccccCCCCCccCceEEEEECCEeEeeeeecCCCCCcccceEEEEEeCccCCCEEEEEEEECCC-C
Confidence 6899999999999998742 3589999999999999999999999999999999997543 34589999999998 7
Q ss_pred CCCCccceEEEEeeccccCc
Q 001987 611 DQATSLGHAEINFLKHTSTE 630 (985)
Q Consensus 611 ~~dd~lG~~~i~l~~l~~~~ 630 (985)
++|++||++.++|.++..+.
T Consensus 80 ~~dd~IG~~~l~L~~l~~~~ 99 (108)
T cd04039 80 SFNDYVATGSLSVQELLNAA 99 (108)
T ss_pred CCCcceEEEEEEHHHHHhhC
Confidence 99999999999999987654
|
PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM |
| >cd04041 C2A_fungal C2 domain first repeat; fungal group | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.3e-17 Score=155.14 Aligned_cols=100 Identities=21% Similarity=0.372 Sum_probs=88.6
Q ss_pred eEEEEEEEEeecCCCCCCC-CCCCcEEEEEEC---CEEEEeeeccCCCCCeEeEEEEEEeecC---CCCEEEEEEEecCC
Q 001987 536 WVLTVALVEGVNLASSEMT-GLSDPYVVFTCN---GKTRTSSVQLQTCDPQWHDILEFDAMEE---PPSVLDVEVFDFDG 608 (985)
Q Consensus 536 g~L~V~v~~a~~L~~~d~~-g~~DPyv~v~~~---~~~~kT~~~~~tlnP~Wne~f~f~v~~~---~~~~L~v~V~D~d~ 608 (985)
|+|+|+|++|++|+..|.. |.+||||++++. ....+|+++++++||+|||.|.|.+... ....|.|+|||+|.
T Consensus 1 G~L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~d~ 80 (111)
T cd04041 1 GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVLVTPDEVKAGERLSCRLWDSDR 80 (111)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCCccEEEEEccCCCccEeeeeECCCCCCccceeEEEEeCchhccCCCEEEEEEEeCCC
Confidence 6899999999999999988 999999999984 3568999999999999999999986443 45689999999998
Q ss_pred CCCCCCccceEEEEeeccccCcccceEEEcc
Q 001987 609 PFDQATSLGHAEINFLKHTSTELADMWVSLE 639 (985)
Q Consensus 609 ~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~ 639 (985)
+++|++||++.+++.++. ....|+++.
T Consensus 81 -~~~dd~lG~~~i~l~~l~---~~~~~~~~~ 107 (111)
T cd04041 81 -FTADDRLGRVEIDLKELI---EDRNWMGRR 107 (111)
T ss_pred -CCCCCcceEEEEEHHHHh---cCCCCCccc
Confidence 799999999999999987 356788886
|
C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan |
| >cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1) | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.2e-16 Score=153.71 Aligned_cols=117 Identities=21% Similarity=0.411 Sum_probs=96.8
Q ss_pred cEEEEEEEEeecCC---CCCcEEEEEECCeE-EeecCccCCCCCeEeeEEEEEEecCCCceEEEEEEecCCCCCCCCCCC
Q 001987 4 TRLYVYVLQGQDLL---AKDSYVKVQIGKHK-SKSRILKNNSNPVWNEEFVFRVHNIDDEELVVSVFQHNDDSGLFGSSG 79 (985)
Q Consensus 4 ~~L~V~V~~Ar~L~---~~DPyv~v~l~~~~-~kT~v~~~t~nP~wnE~f~f~v~~~~~~~L~~~V~D~d~~~~~~~~~d 79 (985)
..|+|+|++|+||+ .+||||+|++++.+ .+|+++ +++||.|||+|.|.+..+....+.|.|||.+ + .+++
T Consensus 4 ~~L~V~Vi~A~~L~~~~~~DPYv~v~l~~~~~~kT~v~-~~~nP~WnE~f~f~~~~~~~~~l~v~v~d~~---~--~~~d 77 (126)
T cd08400 4 RSLQLNVLEAHKLPVKHVPHPYCVISLNEVKVARTKVR-EGPNPVWSEEFVFDDLPPDVNSFTISLSNKA---K--RSKD 77 (126)
T ss_pred eEEEEEEEEeeCCCCCCCCCeeEEEEECCEeEEEeecC-CCCCCccCCEEEEecCCCCcCEEEEEEEECC---C--CCCC
Confidence 47999999999999 78999999998754 789875 6899999999999864444468899999999 4 5799
Q ss_pred CeeEEEEEeCccccccCCCCCCCeEEEeecCCCCCCCCccccEEEEEEEEEe
Q 001987 80 ELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTNKDCGKILLTISLNG 131 (985)
Q Consensus 80 ~~lG~~~i~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~~G~I~lsl~~~~ 131 (985)
++||++.+||.++..+. ....||+|. +... ......|+|+|+++|.+
T Consensus 78 ~~iG~v~i~l~~l~~~~---~~~~W~~L~-~~~~-~~~~~~G~i~l~l~~~~ 124 (126)
T cd08400 78 SEIAEVTVQLSKLQNGQ---ETDEWYPLS-SASP-LKGGEWGSLRIRARYSH 124 (126)
T ss_pred CeEEEEEEEHhHccCCC---cccEeEEcc-cCCC-CCCCcCcEEEEEEEEEc
Confidence 99999999999988652 367899998 4332 12567899999999965
|
RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki |
| >cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.3e-17 Score=153.87 Aligned_cols=102 Identities=20% Similarity=0.391 Sum_probs=90.8
Q ss_pred EEEEEEEeecCCCCCC-CCCCCcEEEEEECCEEEEeeeccCCCCCeE-eEEEEEEeecC--CCCEEEEEEEecCCCCCCC
Q 001987 538 LTVALVEGVNLASSEM-TGLSDPYVVFTCNGKTRTSSVQLQTCDPQW-HDILEFDAMEE--PPSVLDVEVFDFDGPFDQA 613 (985)
Q Consensus 538 L~V~v~~a~~L~~~d~-~g~~DPyv~v~~~~~~~kT~~~~~tlnP~W-ne~f~f~v~~~--~~~~L~v~V~D~d~~~~~d 613 (985)
|+|+|++|+||+..+. .|.+||||++++++++++|+++++++||.| ||.|.|.+... ....|.|+|||+|. +++|
T Consensus 1 l~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~kT~v~~~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~-~~~~ 79 (110)
T cd08688 1 LKVRVVAARDLPVMDRSSDLTDAFVEVKFGSTTYKTDVVKKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDT-YSAN 79 (110)
T ss_pred CEEEEEEEECCCccccCCCCCCceEEEEECCeeEecceecCCCCCcccCcEEEEEcChHHcCCCeEEEEEEeCCC-CCCC
Confidence 5899999999999884 789999999999999999999999999999 99999996433 24689999999998 7999
Q ss_pred CccceEEEEeecccc---CcccceEEEccc
Q 001987 614 TSLGHAEINFLKHTS---TELADMWVSLEG 640 (985)
Q Consensus 614 d~lG~~~i~l~~l~~---~~~~~~w~~L~~ 640 (985)
++||++.+++.++.. ....+.||+|..
T Consensus 80 ~~iG~~~~~l~~l~~~~~~~~~~~w~~l~~ 109 (110)
T cd08688 80 DAIGKVYIDLNPLLLKDSVSQISGWFPIYD 109 (110)
T ss_pred CceEEEEEeHHHhcccCCccccCCeEEccc
Confidence 999999999999876 345788999964
|
The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a |
| >cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins | Back alignment and domain information |
|---|
Probab=99.72 E-value=5.1e-17 Score=154.75 Aligned_cols=111 Identities=25% Similarity=0.468 Sum_probs=95.4
Q ss_pred cEEEEEEEEeecCC------CCCcEEEEEECCeEEeecCccC-CCCCeEeeEEEEEEecCCCceEEEEEEecCCCCCCCC
Q 001987 4 TRLYVYVLQGQDLL------AKDSYVKVQIGKHKSKSRILKN-NSNPVWNEEFVFRVHNIDDEELVVSVFQHNDDSGLFG 76 (985)
Q Consensus 4 ~~L~V~V~~Ar~L~------~~DPyv~v~l~~~~~kT~v~~~-t~nP~wnE~f~f~v~~~~~~~L~~~V~D~d~~~~~~~ 76 (985)
+.|+|+|++|+||+ .+||||+|++++.+++|+++++ ++||.|||+|.|.++....+.|.|+|||++ . .
T Consensus 1 g~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~~~~~~~~nP~Wne~f~f~v~~~~~~~l~i~v~d~~---~--~ 75 (118)
T cd08681 1 GTLVVVVLKARNLPNKRKLDKQDPYCVLRIGGVTKKTKTDFRGGQHPEWDEELRFEITEDKKPILKVAVFDDD---K--R 75 (118)
T ss_pred CEEEEEEEEccCCCCCCcCCCCCceEEEEECCCccccccccCCCCCCccCceEEEEecCCCCCEEEEEEEeCC---C--C
Confidence 57999999999998 7899999999998999998754 799999999999997656789999999999 4 3
Q ss_pred CCCCeeEEEEEeCccccccCCCCCCCeEEEeecCCCCCCCCccccEEEEEEEE
Q 001987 77 SSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTNKDCGKILLTISL 129 (985)
Q Consensus 77 ~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~~G~I~lsl~~ 129 (985)
+ +++||++.+++.++.... ....|++|.++ .+..|+|+|.++|
T Consensus 76 ~-~~~iG~~~~~l~~~~~~~---~~~~w~~L~~~------~~~~G~i~l~l~f 118 (118)
T cd08681 76 K-PDLIGDTEVDLSPALKEG---EFDDWYELTLK------GRYAGEVYLELTF 118 (118)
T ss_pred C-CcceEEEEEecHHHhhcC---CCCCcEEeccC------CcEeeEEEEEEEC
Confidence 4 899999999999987643 35789999832 3468999999986
|
Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr |
| >cd08373 C2A_Ferlin C2 domain first repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.71 E-value=1e-16 Score=154.67 Aligned_cols=117 Identities=19% Similarity=0.346 Sum_probs=103.6
Q ss_pred EEEeecCCCCCCCCCCCcEEEEEECCEEEEeeeccCCCCCeEeEEEEEEeec--CCCCEEEEEEEecCCCCCCCCccceE
Q 001987 542 LVEGVNLASSEMTGLSDPYVVFTCNGKTRTSSVQLQTCDPQWHDILEFDAME--EPPSVLDVEVFDFDGPFDQATSLGHA 619 (985)
Q Consensus 542 v~~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~~~~~tlnP~Wne~f~f~v~~--~~~~~L~v~V~D~d~~~~~dd~lG~~ 619 (985)
|++|+||+. ..|.+||||++++++.+++|+++++++||+|||+|.|.+.. .....|.|+|||+|. +++|++||++
T Consensus 2 vi~a~~L~~--~~g~~Dpyv~v~~~~~~~kT~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~-~~~d~~iG~~ 78 (127)
T cd08373 2 VVSLKNLPG--LKGKGDRIAKVTFRGVKKKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEK-VGRNRLIGSA 78 (127)
T ss_pred eEEeeCCcc--cCCCCCCEEEEEECCEeeecceeCCCcCCcccceEEEEeCCCcCCCCEEEEEEEECCC-CCCCceEEEE
Confidence 789999998 68899999999999999999999999999999999999643 356799999999998 7899999999
Q ss_pred EEEeeccccCcccceEEEccccccCCcceeEEEEEeeecCCC
Q 001987 620 EINFLKHTSTELADMWVSLEGKLAQSAQSKVHLRIFLENNNG 661 (985)
Q Consensus 620 ~i~l~~l~~~~~~~~w~~L~~~~~~~~~g~l~l~~~ls~~~~ 661 (985)
.++|.++..+.....|++|....+....|+|++.+.+....+
T Consensus 79 ~~~l~~l~~~~~~~~~~~L~~~~~~~~~~~l~l~~~~~~~~~ 120 (127)
T cd08373 79 TVSLQDLVSEGLLEVTEPLLDSNGRPTGATISLEVSYQPPDG 120 (127)
T ss_pred EEEhhHcccCCceEEEEeCcCCCCCcccEEEEEEEEEeCCCC
Confidence 999999988888899999987655556789999998766644
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8 | Back alignment and domain information |
|---|
Probab=99.71 E-value=5e-17 Score=156.22 Aligned_cols=104 Identities=25% Similarity=0.529 Sum_probs=93.8
Q ss_pred CeEEEEEEEEeecCCCCCCCCCCCcEEEEEEC---CEEEEeeeccCCCCCeEeEEEEEEeecC--CCCEEEEEEEecCCC
Q 001987 535 GWVLTVALVEGVNLASSEMTGLSDPYVVFTCN---GKTRTSSVQLQTCDPQWHDILEFDAMEE--PPSVLDVEVFDFDGP 609 (985)
Q Consensus 535 ~g~L~V~v~~a~~L~~~d~~g~~DPyv~v~~~---~~~~kT~~~~~tlnP~Wne~f~f~v~~~--~~~~L~v~V~D~d~~ 609 (985)
.|.|+|+|++|+||++.|..|.+||||++++. .+.++|+++++++||+|||+|.|.+... ....|.|+|||+|.
T Consensus 15 ~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l~~~~l~i~V~d~~~- 93 (124)
T cd08387 15 MGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSKIHKKTLNPEFDESFVFEVPPQELPKRTLEVLLYDFDQ- 93 (124)
T ss_pred CCEEEEEEEEeeCCCCCCCCCCCCCeEEEEEecCCCCcEeCceEcCCCCCCcccEEEEeCCHHHhCCCEEEEEEEECCC-
Confidence 56899999999999999999999999999993 4578999999999999999999996432 35689999999998
Q ss_pred CCCCCccceEEEEeeccccCcccceEEEcc
Q 001987 610 FDQATSLGHAEINFLKHTSTELADMWVSLE 639 (985)
Q Consensus 610 ~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~ 639 (985)
+++|++||++.|+|.++..++..+.|++|.
T Consensus 94 ~~~~~~iG~~~i~l~~~~~~~~~~~W~~l~ 123 (124)
T cd08387 94 FSRDECIGVVELPLAEVDLSEKLDLWRKIQ 123 (124)
T ss_pred CCCCceeEEEEEecccccCCCCcceEEECc
Confidence 789999999999999998888889999986
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv |
| >cd08375 C2_Intersectin C2 domain present in Intersectin | Back alignment and domain information |
|---|
Probab=99.71 E-value=1e-16 Score=156.04 Aligned_cols=113 Identities=26% Similarity=0.535 Sum_probs=96.4
Q ss_pred cEEEEEEEEeecCC------CCCcEEEEEECCeEEeecCccCCCCCeEeeEEEEEEecCCCceEEEEEEecCCCCCCCCC
Q 001987 4 TRLYVYVLQGQDLL------AKDSYVKVQIGKHKSKSRILKNNSNPVWNEEFVFRVHNIDDEELVVSVFQHNDDSGLFGS 77 (985)
Q Consensus 4 ~~L~V~V~~Ar~L~------~~DPyv~v~l~~~~~kT~v~~~t~nP~wnE~f~f~v~~~~~~~L~~~V~D~d~~~~~~~~ 77 (985)
+.|+|+|++|++|+ .+||||+++++++.++|+++++++||.|||+|.|.+.++....|.|+|||.+ . .+
T Consensus 15 G~L~V~Vi~A~~L~~~d~~g~~DPYv~v~~~~~~~kT~vi~~t~nP~Wne~f~f~v~~~~~~~l~i~V~D~d---~--~~ 89 (136)
T cd08375 15 GRLMVVIVEGRDLKPCNSNGKSDPYCEVSMGSQEHKTKVVSDTLNPKWNSSMQFFVKDLEQDVLCITVFDRD---F--FS 89 (136)
T ss_pred EEEEEEEEEeeCCCCCCCCCCcCcEEEEEECCEeeeccccCCCCCCccCceEEEEecCccCCEEEEEEEECC---C--CC
Confidence 68999999999998 7899999999999999999999999999999999997667789999999999 4 57
Q ss_pred CCCeeEEEEEeCccccccCCC--CCCCeEEEeecCCCCCCCCccccEEEEEEEE
Q 001987 78 SGELMGRVRVPVSSIAAEDNH--MLPPTWFSLETPKTRKFTNKDCGKILLTISL 129 (985)
Q Consensus 78 ~d~~lG~~~i~L~~l~~~~~~--~~~~~W~~L~~~~~~~~~~~~~G~I~lsl~~ 129 (985)
+|++||++.++|.++...... .....|..|. ...+|+|+|.+.+
T Consensus 90 ~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~--------~~~~g~i~l~~~~ 135 (136)
T cd08375 90 PDDFLGRTEIRVADILKETKESKGPITKRLLLH--------EVPTGEVVVKLDL 135 (136)
T ss_pred CCCeeEEEEEEHHHhccccccCCCcEEEEeccc--------cccceeEEEEEEe
Confidence 899999999999999863221 2233455554 4568999999886
|
A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro |
| >cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Probab=99.71 E-value=9.3e-17 Score=153.18 Aligned_cols=112 Identities=25% Similarity=0.412 Sum_probs=92.0
Q ss_pred EEEEEEEEeec---CC------CCCcEEEEEECCeEEeecCccCCCCCeEeeEEEEEEecCCCceEEEEEEecCCCCCCC
Q 001987 5 RLYVYVLQGQD---LL------AKDSYVKVQIGKHKSKSRILKNNSNPVWNEEFVFRVHNIDDEELVVSVFQHNDDSGLF 75 (985)
Q Consensus 5 ~L~V~V~~Ar~---L~------~~DPyv~v~l~~~~~kT~v~~~t~nP~wnE~f~f~v~~~~~~~L~~~V~D~d~~~~~~ 75 (985)
.|.|+|++|+| |. .+||||+|++++++.||+++++++||+|||+|.|.+.. ....|.|+|||++ .+.
T Consensus 1 ~L~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~g~~~~rTk~~~~~~nP~WnE~f~f~v~~-~~~~l~v~V~d~d---~~~ 76 (126)
T cd08379 1 ILEVGILGAQGLDVLRAKDGRGSTDAYCVAKYGPKWVRTRTVEDSSNPRWNEQYTWPVYD-PCTVLTVGVFDNS---QSH 76 (126)
T ss_pred CeEEEEEEeECCccccccccCCCCCeeEEEEECCEEeEcCcccCCCCCcceeEEEEEecC-CCCEEEEEEEECC---Ccc
Confidence 48999999999 55 78999999999999999999999999999999999853 3458999999998 310
Q ss_pred ----CCCCCeeEEEEEeCccccccCCCCCCCeEEEeecCCCCCCCCccccEEEE
Q 001987 76 ----GSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTNKDCGKILL 125 (985)
Q Consensus 76 ----~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~~G~I~l 125 (985)
..+|++||++.++|..+..+. ....||+|.....+. .+..|+|.+
T Consensus 77 ~~~~~~~dd~lG~~~i~l~~l~~~~---~~~~~~~L~~~~~~~--~~~~g~l~~ 125 (126)
T cd08379 77 WKEAVQPDVLIGKVRIRLSTLEDDR---VYAHSYPLLSLNPSG--VKKMGELEC 125 (126)
T ss_pred ccccCCCCceEEEEEEEHHHccCCC---EEeeEEEeEeCCCCC--ccCCcEEEe
Confidence 138999999999999998653 357899999443322 556788875
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate |
| >cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.3e-16 Score=154.28 Aligned_cols=120 Identities=21% Similarity=0.393 Sum_probs=101.1
Q ss_pred cEEEEEEEEeecCC--------CCCcEEEEEECCeEEeecCccCCCCCeEeeEEEEEEecCCCceEEEEEEecCCCCCCC
Q 001987 4 TRLYVYVLQGQDLL--------AKDSYVKVQIGKHKSKSRILKNNSNPVWNEEFVFRVHNIDDEELVVSVFQHNDDSGLF 75 (985)
Q Consensus 4 ~~L~V~V~~Ar~L~--------~~DPyv~v~l~~~~~kT~v~~~t~nP~wnE~f~f~v~~~~~~~L~~~V~D~d~~~~~~ 75 (985)
+.|+|+|++|+||+ .+||||+|++++.+++|+++++++||.|||+|.|.+..+..+.|.|+|||++ .
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~~~dPyv~v~~~~~~~kT~~~~~t~~P~Wne~f~~~~~~~~~~~l~i~v~d~~---~-- 75 (128)
T cd04024 1 GVLRVHVVEAKDLAAKDRSGKGKSDPYAILSVGAQRFKTQTIPNTLNPKWNYWCEFPIFSAQNQLLKLILWDKD---R-- 75 (128)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCcCCeEEEEECCEEEecceecCCcCCccCCcEEEEecCCCCCEEEEEEEECC---C--
Confidence 57999999999997 4799999999999999999999999999999999996667789999999999 4
Q ss_pred CCCCCeeEEEEEeCccccccCCCCCCCeEEEeecCCCCCCCCccccEEEEEEEE
Q 001987 76 GSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTNKDCGKILLTISL 129 (985)
Q Consensus 76 ~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~~G~I~lsl~~ 129 (985)
.+++++||++.++|.++...+.......||+|.+...+ ......|+|+|.++|
T Consensus 76 ~~~~~~lG~~~i~l~~~~~~~~~~~~~~w~~L~~~~~~-~~~~~~G~i~l~~~~ 128 (128)
T cd04024 76 FAGKDYLGEFDIALEEVFADGKTGQSDKWITLKSTRPG-KTSVVSGEIHLQFSW 128 (128)
T ss_pred CCCCCcceEEEEEHHHhhcccccCccceeEEccCcccC-ccccccceEEEEEEC
Confidence 56899999999999998753222346799999844332 235679999999875
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu |
| >cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10 | Back alignment and domain information |
|---|
Probab=99.71 E-value=7.4e-17 Score=155.06 Aligned_cols=105 Identities=26% Similarity=0.450 Sum_probs=93.8
Q ss_pred CCeEEEEEEEEeecCCCCCCCCCCCcEEEEEEC---CEEEEeeeccCCCCCeEeEEEEEEeecC--CCCEEEEEEEecCC
Q 001987 534 DGWVLTVALVEGVNLASSEMTGLSDPYVVFTCN---GKTRTSSVQLQTCDPQWHDILEFDAMEE--PPSVLDVEVFDFDG 608 (985)
Q Consensus 534 ~~g~L~V~v~~a~~L~~~d~~g~~DPyv~v~~~---~~~~kT~~~~~tlnP~Wne~f~f~v~~~--~~~~L~v~V~D~d~ 608 (985)
..+.|+|+|++|+||++.|..|.+||||++++. .+.++|+++++++||+|||+|.|.+... ....|.|+|||+|.
T Consensus 14 ~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~V~d~d~ 93 (124)
T cd08385 14 QSNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFTFKVPYSELGNKTLVFSVYDFDR 93 (124)
T ss_pred CCCEEEEEEEEeeCCCCccCCCCCCCEEEEEEEcCCCCceecccCcCCCCCceeeeEEEeCCHHHhCCCEEEEEEEeCCC
Confidence 356899999999999999999999999999984 3578999999999999999999996432 34689999999998
Q ss_pred CCCCCCccceEEEEeeccccCcccceEEEcc
Q 001987 609 PFDQATSLGHAEINFLKHTSTELADMWVSLE 639 (985)
Q Consensus 609 ~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~ 639 (985)
++++++||++.++|.++..+...+.|++|+
T Consensus 94 -~~~~~~lG~~~i~l~~~~~~~~~~~W~~l~ 123 (124)
T cd08385 94 -FSKHDLIGEVRVPLLTVDLGHVTEEWRDLE 123 (124)
T ss_pred -CCCCceeEEEEEecCcccCCCCcceEEEcc
Confidence 799999999999999998888889999986
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and |
| >cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.1e-16 Score=150.50 Aligned_cols=98 Identities=15% Similarity=0.199 Sum_probs=86.0
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEECCEEEEeeeccCCCCCeEeEEEEEEeecCCCCEEEEEEEecCCCCCCCCc
Q 001987 536 WVLTVALVEGVNLASSEMTGLSDPYVVFTCNGKTRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGPFDQATS 615 (985)
Q Consensus 536 g~L~V~v~~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~~~~~tlnP~Wne~f~f~v~~~~~~~L~v~V~D~d~~~~~dd~ 615 (985)
+.|.|+|++|++|+..+ ..||||+|++++++.+|++.++ .||.|||+|.|.+ ......|.|+|||+|. ..||+
T Consensus 2 ~~L~V~Vv~Ar~L~~~~---~~dPYV~Ik~g~~k~kT~v~~~-~nP~WnE~F~F~~-~~~~~~L~v~V~dkd~--~~DD~ 74 (127)
T cd08394 2 SLLCVLVKKAKLDGAPD---KFNTYVTLKVQNVKSTTIAVRG-SQPCWEQDFMFEI-NRLDLGLVIELWNKGL--IWDTL 74 (127)
T ss_pred ceEEEEEEEeeCCCCCC---CCCCeEEEEECCEEeEeeECCC-CCCceeeEEEEEE-cCCCCEEEEEEEeCCC--cCCCc
Confidence 58999999999997655 5699999999999999999977 5999999999995 5566679999999996 48999
Q ss_pred cceEEEEeeccccCccc--ceEEEccc
Q 001987 616 LGHAEINFLKHTSTELA--DMWVSLEG 640 (985)
Q Consensus 616 lG~~~i~l~~l~~~~~~--~~w~~L~~ 640 (985)
||++.|+|.++...... ..||+|++
T Consensus 75 lG~v~i~L~~v~~~~~~~~~~Wy~L~~ 101 (127)
T cd08394 75 VGTVWIPLSTIRQSNEEGPGEWLTLDS 101 (127)
T ss_pred eEEEEEEhHHcccCCCCCCCccEecCh
Confidence 99999999998765544 89999986
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi |
| >cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3 | Back alignment and domain information |
|---|
Probab=99.70 E-value=6.2e-17 Score=155.74 Aligned_cols=104 Identities=19% Similarity=0.290 Sum_probs=90.3
Q ss_pred CeEEEEEEEEeecCCCCCCC-CCCCcEEEEEEC-----CEEEEeeeccCCCCCeEeEEEEEEeecC--CCCEEEEEEEec
Q 001987 535 GWVLTVALVEGVNLASSEMT-GLSDPYVVFTCN-----GKTRTSSVQLQTCDPQWHDILEFDAMEE--PPSVLDVEVFDF 606 (985)
Q Consensus 535 ~g~L~V~v~~a~~L~~~d~~-g~~DPyv~v~~~-----~~~~kT~~~~~tlnP~Wne~f~f~v~~~--~~~~L~v~V~D~ 606 (985)
.+.|.|+|++|+||++.|.. |.+||||++++. ..++||+++++++||+|||+|.|.+... ....|.|.|||+
T Consensus 14 ~~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~~~k~kT~v~~~t~nPvfNE~F~f~v~~~~l~~~~L~v~V~~~ 93 (128)
T cd08392 14 TSCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKRKTAVKKGTVNPVFNETLKYVVEADLLSSRQLQVSVWHS 93 (128)
T ss_pred CCEEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCcccceeecccccCCCCCccceEEEEEcCHHHhCCcEEEEEEEeC
Confidence 46899999999999999975 999999999994 3477999999999999999999996432 356999999999
Q ss_pred CCCCCCCCccceEEEEeeccccC---cccceEEEcc
Q 001987 607 DGPFDQATSLGHAEINFLKHTST---ELADMWVSLE 639 (985)
Q Consensus 607 d~~~~~dd~lG~~~i~l~~l~~~---~~~~~w~~L~ 639 (985)
|. ++++++||++.|+|.++... .....||+|.
T Consensus 94 ~~-~~~~~~lG~~~i~L~~~~~~~~~~~~~~W~~l~ 128 (128)
T cd08392 94 RT-LKRRVFLGEVLIPLADWDFEDTDSQRFLWYPLN 128 (128)
T ss_pred CC-CcCcceEEEEEEEcCCcccCCCCccccceEECc
Confidence 98 79999999999999998554 3678899984
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids |
| >cd04046 C2_Calpain C2 domain present in Calpain proteins | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.6e-16 Score=151.58 Aligned_cols=117 Identities=21% Similarity=0.320 Sum_probs=100.0
Q ss_pred CeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCEEEEeeeccCCCCCeEeEEEEEEeecCCCCEEEEEEEecCCCCCCCC
Q 001987 535 GWVLTVALVEGVNLASSEMTGLSDPYVVFTCNGKTRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGPFDQAT 614 (985)
Q Consensus 535 ~g~L~V~v~~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~~~~~tlnP~Wne~f~f~v~~~~~~~L~v~V~D~d~~~~~dd 614 (985)
.++|+|+|++|++|+..|..|.+||||++.++++.++|+++++++||+|||.|.|.+ ......|.|+|||+|. + +|+
T Consensus 2 ~~~~~V~v~~A~~L~~~d~~g~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~-~~~~~~l~i~V~d~~~-~-~d~ 78 (126)
T cd04046 2 QVVTQVHVHSAEGLSKQDSGGGADPYVIIKCEGESVRSPVQKDTLSPEFDTQAIFYR-KKPRSPIKIQVWNSNL-L-CDE 78 (126)
T ss_pred cEEEEEEEEeCcCCCCCCCCCCcCccEEEEECCEEEEeCccCCCCCCcccceEEEEe-cCCCCEEEEEEEECCC-C-CCC
Confidence 468999999999999999999999999999999999999999999999999999984 4567799999999997 4 589
Q ss_pred ccceEEEEeeccccCcccceEEEcccc---ccCCcceeEEEEEee
Q 001987 615 SLGHAEINFLKHTSTELADMWVSLEGK---LAQSAQSKVHLRIFL 656 (985)
Q Consensus 615 ~lG~~~i~l~~l~~~~~~~~w~~L~~~---~~~~~~g~l~l~~~l 656 (985)
+||++.+++..+. .....|++|... ......|.|.+++.+
T Consensus 79 ~lG~~~~~l~~~~--~~~~~~~~l~~~~~~~~~~~~G~i~~~~~~ 121 (126)
T cd04046 79 FLGQATLSADPND--SQTLRTLPLRKRGRDAAGEVPGTISVKVTS 121 (126)
T ss_pred ceEEEEEecccCC--CcCceEEEcccCCCCCCCCCCCEEEEEEEE
Confidence 9999999998753 345678888632 333457889888864
|
A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic |
| >cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3 | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.4e-16 Score=151.97 Aligned_cols=112 Identities=19% Similarity=0.396 Sum_probs=94.6
Q ss_pred EEEEEEEeecCC-------CCCcEEEEEECCe-EEeecCccCCCCCeEeeEEEEEEecCCCceEEEEEEecCCCCCCCCC
Q 001987 6 LYVYVLQGQDLL-------AKDSYVKVQIGKH-KSKSRILKNNSNPVWNEEFVFRVHNIDDEELVVSVFQHNDDSGLFGS 77 (985)
Q Consensus 6 L~V~V~~Ar~L~-------~~DPyv~v~l~~~-~~kT~v~~~t~nP~wnE~f~f~v~~~~~~~L~~~V~D~d~~~~~~~~ 77 (985)
|.|+|++|+||+ .+||||.|+++++ .++|+++++|+||.|||+|.|.++ .....|.|.|||++ + .+
T Consensus 2 l~v~v~~a~~L~~~~~~~g~sDpYv~v~l~~~~~~kT~v~~kt~~P~WnE~F~f~v~-~~~~~l~~~v~d~~---~--~~ 75 (121)
T cd08401 2 LKIKIGEAKNLPPRSGPNKMRDCYCTVNLDQEEVFRTKTVEKSLCPFFGEDFYFEIP-RTFRHLSFYIYDRD---V--LR 75 (121)
T ss_pred eEEEEEEccCCCCCCCCCCCcCcEEEEEECCccEEEeeEEECCCCCccCCeEEEEcC-CCCCEEEEEEEECC---C--CC
Confidence 789999999998 4799999999865 589999999999999999999994 33579999999999 5 57
Q ss_pred CCCeeEEEEEeCccccccCCCCCCCeEEEeecCCCCCCCCccccEEEEEEEE
Q 001987 78 SGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTNKDCGKILLTISL 129 (985)
Q Consensus 78 ~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~~G~I~lsl~~ 129 (985)
++++||++.++|.++..+ .....||+|+ +.... .+.+|+|+|++++
T Consensus 76 ~~~~iG~~~i~l~~l~~~---~~~~~w~~L~-~~~~~--~~~~G~i~l~~~~ 121 (121)
T cd08401 76 RDSVIGKVAIKKEDLHKY---YGKDTWFPLQ-PVDAD--SEVQGKVHLELRL 121 (121)
T ss_pred CCceEEEEEEEHHHccCC---CCcEeeEEEE-ccCCC--CcccEEEEEEEEC
Confidence 899999999999999864 2468899999 43322 3468999999864
|
RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p |
| >cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.1e-16 Score=148.88 Aligned_cols=109 Identities=27% Similarity=0.519 Sum_probs=96.0
Q ss_pred EEEEEEEEeecCC------CCCcEEEEEECCeEEeecCccCCCCCeEeeEEEEEEecCCCceEEEEEEecCCCCCCCCCC
Q 001987 5 RLYVYVLQGQDLL------AKDSYVKVQIGKHKSKSRILKNNSNPVWNEEFVFRVHNIDDEELVVSVFQHNDDSGLFGSS 78 (985)
Q Consensus 5 ~L~V~V~~Ar~L~------~~DPyv~v~l~~~~~kT~v~~~t~nP~wnE~f~f~v~~~~~~~L~~~V~D~d~~~~~~~~~ 78 (985)
.|+|+|++|+||+ .+||||++++++++++|+++++|+||.|||+|.|.+.......|.|+|||++ . .++
T Consensus 1 ~~~V~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~v~v~d~~---~--~~~ 75 (116)
T cd08376 1 VVTIVLVEGKNLPPMDDNGLSDPYVKFRLGNEKYKSKVCSKTLNPQWLEQFDLHLFDDQSQILEIEVWDKD---T--GKK 75 (116)
T ss_pred CEEEEEEEEECCCCCCCCCCCCcEEEEEECCEeEecccccCCCCCceeEEEEEEecCCCCCEEEEEEEECC---C--CCC
Confidence 3789999999998 6899999999999999999999999999999999986666789999999999 4 578
Q ss_pred CCeeEEEEEeCccccccCCCCCCCeEEEeecCCCCCCCCccccEEEEEEEEE
Q 001987 79 GELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTNKDCGKILLTISLN 130 (985)
Q Consensus 79 d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~~G~I~lsl~~~ 130 (985)
+++||++.++|.++..+ .....|++|. + ..|+|++.+.|.
T Consensus 76 ~~~iG~~~~~l~~l~~~---~~~~~w~~L~-~--------~~G~~~~~~~~~ 115 (116)
T cd08376 76 DEFIGRCEIDLSALPRE---QTHSLELELE-D--------GEGSLLLLLTLT 115 (116)
T ss_pred CCeEEEEEEeHHHCCCC---CceEEEEEcc-C--------CCcEEEEEEEec
Confidence 99999999999998865 3467899998 2 259999998874
|
MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei |
| >cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.3e-16 Score=150.85 Aligned_cols=97 Identities=25% Similarity=0.362 Sum_probs=83.4
Q ss_pred EEEEEEEEeecCC-----CCCcEEEEEECC-------eEEeecCccCCCCCeEeeEEEEEEe---cCCCceEEEEEEecC
Q 001987 5 RLYVYVLQGQDLL-----AKDSYVKVQIGK-------HKSKSRILKNNSNPVWNEEFVFRVH---NIDDEELVVSVFQHN 69 (985)
Q Consensus 5 ~L~V~V~~Ar~L~-----~~DPyv~v~l~~-------~~~kT~v~~~t~nP~wnE~f~f~v~---~~~~~~L~~~V~D~d 69 (985)
+|+|+|++|+||+ .+||||+|++.+ ++++|+++++|+||+|||+|.|.++ .+....|.|.|||+|
T Consensus 1 kL~V~Vi~A~~L~~~d~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~D~d 80 (120)
T cd08395 1 KVTVKVVAANDLKWQTTGMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICVKDYC 80 (120)
T ss_pred CEEEEEEECcCCCcccCCCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEEEEec
Confidence 5899999999998 689999999831 3578999999999999999999986 244577999999999
Q ss_pred CCCCCCCCCCCeeEEEEEeCccccccCCCCCCCeEEEeec
Q 001987 70 DDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLET 109 (985)
Q Consensus 70 ~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~~ 109 (985)
..+++++||++.+||.++..++ ....|++|.+
T Consensus 81 -----~~~~dd~IG~~~l~l~~~~~~~---~~~~w~~L~~ 112 (120)
T cd08395 81 -----FARDDRLVGVTVLQLRDIAQAG---SCACWLPLGR 112 (120)
T ss_pred -----ccCCCCEEEEEEEEHHHCcCCC---cEEEEEECcC
Confidence 3578999999999999999764 3678999983
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi |
| >cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.1e-16 Score=154.01 Aligned_cols=104 Identities=21% Similarity=0.391 Sum_probs=89.7
Q ss_pred CCeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----EEEEeeeccCCCCCeEeEEEEEEeecC---CCCEEEEEEEe
Q 001987 534 DGWVLTVALVEGVNLASSEMTGLSDPYVVFTCNG-----KTRTSSVQLQTCDPQWHDILEFDAMEE---PPSVLDVEVFD 605 (985)
Q Consensus 534 ~~g~L~V~v~~a~~L~~~d~~g~~DPyv~v~~~~-----~~~kT~~~~~tlnP~Wne~f~f~v~~~---~~~~L~v~V~D 605 (985)
..+.|+|+|++|+||+..+.++.+||||++++.+ .+++|+++++++||+|||+|.|.+... ....|.|+|||
T Consensus 14 ~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~l~~~V~d 93 (125)
T cd04031 14 VTSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYSNVRRETLKERTLEVTVWD 93 (125)
T ss_pred CCCEEEEEEEEecCCCCcCCCCCCCCEEEEEEccCCCccccccccccCCCCCCccccEEEEcccCHHHhCCCEEEEEEEe
Confidence 3568999999999999999999999999999964 578999999999999999999985332 35689999999
Q ss_pred cCCCCCCCCccceEEEEeeccccCcccceEEEcc
Q 001987 606 FDGPFDQATSLGHAEINFLKHTSTELADMWVSLE 639 (985)
Q Consensus 606 ~d~~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~ 639 (985)
+|. ++++++||++.++|.+.. ......||+|+
T Consensus 94 ~~~-~~~~~~iG~~~i~l~~~~-~~~~~~W~~L~ 125 (125)
T cd04031 94 YDR-DGENDFLGEVVIDLADAL-LDDEPHWYPLQ 125 (125)
T ss_pred CCC-CCCCcEeeEEEEeccccc-ccCCcceEECc
Confidence 998 789999999999999833 33457899985
|
RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as |
| >cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.7e-16 Score=152.42 Aligned_cols=117 Identities=21% Similarity=0.509 Sum_probs=96.9
Q ss_pred EEEEEEEEeecCC------CCCcEEEEEECCeEEeecCccCCCCCeEeeEEEEEEecC---------CCceEEEEEEecC
Q 001987 5 RLYVYVLQGQDLL------AKDSYVKVQIGKHKSKSRILKNNSNPVWNEEFVFRVHNI---------DDEELVVSVFQHN 69 (985)
Q Consensus 5 ~L~V~V~~Ar~L~------~~DPyv~v~l~~~~~kT~v~~~t~nP~wnE~f~f~v~~~---------~~~~L~~~V~D~d 69 (985)
+|+|+|++|++|+ .+||||+|++++++++|+++++|+||.|||+|.|.+... ....|.|+|||+|
T Consensus 2 ~l~v~V~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~d~d 81 (135)
T cd04017 2 QLRAYIYQARDLLAADKSGLSDPFARVSFLNQSQETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELFDQD 81 (135)
T ss_pred EEEEEEEEeecCcCCCCCCCCCCEEEEEECCeeeEeeeEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEEeCc
Confidence 6899999999998 789999999999999999999999999999999984211 2367999999999
Q ss_pred CCCCCCCCCCCeeEEEEE-eCccccccCCCCCCCeEEEeecCCCCCCCCccccEEEEEEEEEec
Q 001987 70 DDSGLFGSSGELMGRVRV-PVSSIAAEDNHMLPPTWFSLETPKTRKFTNKDCGKILLTISLNGK 132 (985)
Q Consensus 70 ~~~~~~~~~d~~lG~~~i-~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~~G~I~lsl~~~~~ 132 (985)
+ .++|++||++.+ |+..+...........|++|.+. ....|+|+|++++.+.
T Consensus 82 ---~--~~~d~~iG~~~i~~~~~~~~~~~~~~~~~W~~L~~~------~~~~Geil~~~~~~~~ 134 (135)
T cd04017 82 ---S--VGKDEFLGRSVAKPLVKLDLEEDFPPKLQWFPIYKG------GQSAGELLAAFELIEV 134 (135)
T ss_pred ---C--CCCCccceEEEeeeeeecccCCCCCCCceEEEeecC------CCchhheeEEeEEEEe
Confidence 4 578999999987 66666544344567899999822 3468999999999764
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme |
| >cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11 | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.7e-16 Score=153.03 Aligned_cols=105 Identities=18% Similarity=0.246 Sum_probs=89.9
Q ss_pred CeEEEEEEEEeecCCCCCCC-CCCCcEEEEEEC---CEEEEeeeccCCCCCeEeEEEEEEeec---CCCCEEEEEEEecC
Q 001987 535 GWVLTVALVEGVNLASSEMT-GLSDPYVVFTCN---GKTRTSSVQLQTCDPQWHDILEFDAME---EPPSVLDVEVFDFD 607 (985)
Q Consensus 535 ~g~L~V~v~~a~~L~~~d~~-g~~DPyv~v~~~---~~~~kT~~~~~tlnP~Wne~f~f~v~~---~~~~~L~v~V~D~d 607 (985)
.+.|+|+|++|+||+..+.. |.+||||++.+. +++.||+++++++||+|||+|.|.... .....|.++|||+|
T Consensus 15 ~~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~~~~~~kT~v~~~t~nP~wnE~F~f~~~~~~~~~~~~L~~~V~d~d 94 (128)
T cd08388 15 KKALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVKTRVLRKTRNPVYDETFTFYGIPYNQLQDLSLHFAVLSFD 94 (128)
T ss_pred CCEEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCCcCceeeccEEcCCCCCceeeEEEEcccCHHHhCCCEEEEEEEEcC
Confidence 46899999999999999876 999999999985 457799999999999999999994222 23457999999999
Q ss_pred CCCCCCCccceEEEEeeccccC--cccceEEEccc
Q 001987 608 GPFDQATSLGHAEINFLKHTST--ELADMWVSLEG 640 (985)
Q Consensus 608 ~~~~~dd~lG~~~i~l~~l~~~--~~~~~w~~L~~ 640 (985)
. +++|++||++.|+|.++... +....|++|++
T Consensus 95 ~-~~~d~~lG~~~i~L~~l~~~~~~~~~~~~~~~~ 128 (128)
T cd08388 95 R-YSRDDVIGEVVCPLAGADLLNEGELLVSREIQP 128 (128)
T ss_pred C-CCCCceeEEEEEeccccCCCCCceEEEEEeccC
Confidence 8 79999999999999998554 56788999863
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence |
| >cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42) | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.8e-16 Score=153.00 Aligned_cols=116 Identities=32% Similarity=0.558 Sum_probs=97.1
Q ss_pred EEEEEEEEeecCC------CCCcEEEEEECCe-------EEeecCccCCCCCeEeeEEEEEEecCCCceEEEEEEecCCC
Q 001987 5 RLYVYVLQGQDLL------AKDSYVKVQIGKH-------KSKSRILKNNSNPVWNEEFVFRVHNIDDEELVVSVFQHNDD 71 (985)
Q Consensus 5 ~L~V~V~~Ar~L~------~~DPyv~v~l~~~-------~~kT~v~~~t~nP~wnE~f~f~v~~~~~~~L~~~V~D~d~~ 71 (985)
.|+|+|++|+||+ .+||||+|++.+. +.+|+++++|+||.|||+|.|.+. .....|.|+|||++
T Consensus 1 ~L~v~Vi~a~~L~~~d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~-~~~~~l~~~v~d~~-- 77 (133)
T cd04033 1 ILRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFRVN-PREHRLLFEVFDEN-- 77 (133)
T ss_pred CEEEEEEEeECCCcccCCCCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEEEc-CCCCEEEEEEEECC--
Confidence 3899999999998 6899999999764 479999999999999999999984 44678999999999
Q ss_pred CCCCCCCCCeeEEEEEeCccccccCC---CCCCCeEEEeecCCCCCCCCccccEEEEEEEE
Q 001987 72 SGLFGSSGELMGRVRVPVSSIAAEDN---HMLPPTWFSLETPKTRKFTNKDCGKILLTISL 129 (985)
Q Consensus 72 ~~~~~~~d~~lG~~~i~L~~l~~~~~---~~~~~~W~~L~~~~~~~~~~~~~G~I~lsl~~ 129 (985)
. .+++++||++.+++.++..... ......||+|+ ++..+ .+..|+|+|++.|
T Consensus 78 -~--~~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~-~~~~~--~~~~G~l~~~~~~ 132 (133)
T cd04033 78 -R--LTRDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLR-PRSSK--SRVKGHLRLYMAY 132 (133)
T ss_pred -C--CCCCCeeEEEEEEHHHCCCcCccccccccchheeee-ecCCC--CcceeEEEEEEee
Confidence 4 5789999999999999986532 12467999999 43322 4679999999987
|
Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.2e-16 Score=151.44 Aligned_cols=114 Identities=22% Similarity=0.395 Sum_probs=95.5
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEEC-CEEEEeeeccCCCCCeEeEEEEEEeecCCCCEEEEEEEecCCCCCC--CC
Q 001987 538 LTVALVEGVNLASSEMTGLSDPYVVFTCN-GKTRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGPFDQ--AT 614 (985)
Q Consensus 538 L~V~v~~a~~L~~~d~~g~~DPyv~v~~~-~~~~kT~~~~~tlnP~Wne~f~f~v~~~~~~~L~v~V~D~d~~~~~--dd 614 (985)
|+|+|++|++|+..+..|.+||||+++++ .+.++|+++++++||.|||+|.|.+.. ...|.|+|||++. +++ |+
T Consensus 2 l~v~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~--~~~l~i~V~d~~~-~~~~~d~ 78 (123)
T cd08382 2 VRLTVLCADGLAKRDLFRLPDPFAVITVDGGQTHSTDVAKKTLDPKWNEHFDLTVGP--SSIITIQVFDQKK-FKKKDQG 78 (123)
T ss_pred eEEEEEEecCCCccCCCCCCCcEEEEEECCccceEccEEcCCCCCcccceEEEEeCC--CCEEEEEEEECCC-CCCCCCc
Confidence 78999999999999999999999999996 678999999999999999999999633 6799999999998 665 57
Q ss_pred ccceEEEEeeccccCc-ccceEEEcccccc---CCcceeEEEEE
Q 001987 615 SLGHAEINFLKHTSTE-LADMWVSLEGKLA---QSAQSKVHLRI 654 (985)
Q Consensus 615 ~lG~~~i~l~~l~~~~-~~~~w~~L~~~~~---~~~~g~l~l~~ 654 (985)
+||++.+++.++.... ....|++|..... ....|+|.+++
T Consensus 79 ~lG~~~i~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~G~v~~~~ 122 (123)
T cd08382 79 FLGCVRIRANAVLPLKDTGYQRLDLRKLKKSDNLSVRGKIVVSL 122 (123)
T ss_pred eEeEEEEEHHHccccCCCccceeEeecCCCCCCceEeeEEEEEe
Confidence 9999999999986544 4478999965332 22356776654
|
A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are |
| >cd04018 C2C_Ferlin C2 domain third repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.6e-16 Score=156.36 Aligned_cols=103 Identities=20% Similarity=0.383 Sum_probs=89.8
Q ss_pred EEEEEEEeecCCCCCCCC--------------CCCcEEEEEECCEEEEeeeccCCCCCeEeEEEEEEee-cCCCCEEEEE
Q 001987 538 LTVALVEGVNLASSEMTG--------------LSDPYVVFTCNGKTRTSSVQLQTCDPQWHDILEFDAM-EEPPSVLDVE 602 (985)
Q Consensus 538 L~V~v~~a~~L~~~d~~g--------------~~DPyv~v~~~~~~~kT~~~~~tlnP~Wne~f~f~v~-~~~~~~L~v~ 602 (985)
|.|+|++|++|+.+|..+ .+||||+|.+++++.+|+++++++||+|||+|.|.+. ......|.|+
T Consensus 2 ~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~g~~~kT~v~~~t~nPvWNE~f~f~v~~p~~~~~l~~~ 81 (151)
T cd04018 2 FIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFAGQKVKTSVKKNSYNPEWNEQIVFPEMFPPLCERIKIQ 81 (151)
T ss_pred eEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEECCEeeecceEcCCCCCCcceEEEEEeeCCCcCCEEEEE
Confidence 789999999999998554 6899999999999999999999999999999999964 3445699999
Q ss_pred EEecCCCCCCCCccceEEEEeeccccCcc-------cceEEEcccc
Q 001987 603 VFDFDGPFDQATSLGHAEINFLKHTSTEL-------ADMWVSLEGK 641 (985)
Q Consensus 603 V~D~d~~~~~dd~lG~~~i~l~~l~~~~~-------~~~w~~L~~~ 641 (985)
|||+|. +++||+||++.|+|.++..... ...|+.|.+.
T Consensus 82 v~D~d~-~~~dd~iG~~~l~l~~l~~~~~~~~lp~~~p~W~~lyg~ 126 (151)
T cd04018 82 IRDWDR-VGNDDVIGTHFIDLSKISNSGDEGFLPTFGPSFVNLYGS 126 (151)
T ss_pred EEECCC-CCCCCEEEEEEEeHHHhccCCccccCCccCceEEEeecC
Confidence 999998 6899999999999999766542 4678888763
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7 | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.2e-16 Score=152.02 Aligned_cols=105 Identities=24% Similarity=0.496 Sum_probs=93.4
Q ss_pred CeEEEEEEEEeecCCCCCCCCCCCcEEEEEE---CCEEEEeeeccCCCCCeEeEEEEEEeec---CCCCEEEEEEEecCC
Q 001987 535 GWVLTVALVEGVNLASSEMTGLSDPYVVFTC---NGKTRTSSVQLQTCDPQWHDILEFDAME---EPPSVLDVEVFDFDG 608 (985)
Q Consensus 535 ~g~L~V~v~~a~~L~~~d~~g~~DPyv~v~~---~~~~~kT~~~~~tlnP~Wne~f~f~v~~---~~~~~L~v~V~D~d~ 608 (985)
.+.|+|+|++|+||+..|..|.+||||++++ +++..+|+++++++||+|||+|.|.+.. .....|.++|||+|.
T Consensus 15 ~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~~P~Wne~f~f~~~~~~~l~~~~l~~~v~d~d~ 94 (125)
T cd08386 15 ESTLTLKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKLQQRVLYLQVLDYDR 94 (125)
T ss_pred CCEEEEEEEEecCCCCccCCCCCCceEEEEECCCCCcceeeeeecCCCCCccceeEEEcccCHHHhCCCEEEEEEEeCCC
Confidence 4589999999999999999999999999999 3567899999999999999999997432 234589999999998
Q ss_pred CCCCCCccceEEEEeeccccCcccceEEEccc
Q 001987 609 PFDQATSLGHAEINFLKHTSTELADMWVSLEG 640 (985)
Q Consensus 609 ~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~~ 640 (985)
++++++||++.+++.++..+.....|++|.+
T Consensus 95 -~~~~~~iG~~~i~l~~l~~~~~~~~W~~l~~ 125 (125)
T cd08386 95 -FSRNDPIGEVSLPLNKVDLTEEQTFWKDLKP 125 (125)
T ss_pred -CcCCcEeeEEEEecccccCCCCcceEEecCC
Confidence 7999999999999999988888999999863
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves |
| >cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein | Back alignment and domain information |
|---|
Probab=99.68 E-value=4.6e-16 Score=149.88 Aligned_cols=117 Identities=22% Similarity=0.441 Sum_probs=98.7
Q ss_pred EEEEEEEeecCC----CCCcEEEEEECC--eEEeecCccCCCCCeEeeEEEEEEecCCCceEEEEEEecCCCCCCCCCCC
Q 001987 6 LYVYVLQGQDLL----AKDSYVKVQIGK--HKSKSRILKNNSNPVWNEEFVFRVHNIDDEELVVSVFQHNDDSGLFGSSG 79 (985)
Q Consensus 6 L~V~V~~Ar~L~----~~DPyv~v~l~~--~~~kT~v~~~t~nP~wnE~f~f~v~~~~~~~L~~~V~D~d~~~~~~~~~d 79 (985)
|.|+|++|+||+ .+||||+++++. .+++|+++++|+||.|||+|.|.+ ......|.|+|||++ . .+++
T Consensus 1 l~v~v~~A~~L~~~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~-~~~~~~l~~~v~d~~---~--~~~~ 74 (126)
T cd08678 1 LLVKNIKANGLSEAAGSSNPYCVLEMDEPPQKYQSSTQKNTSNPFWDEHFLFEL-SPNSKELLFEVYDNG---K--KSDS 74 (126)
T ss_pred CEEEEEEecCCCCCCCCcCCEEEEEECCCCcEEEeEEEecCCCCccCceEEEEe-CCCCCEEEEEEEECC---C--CCCC
Confidence 689999999997 899999999973 568999999999999999999998 455778999999999 4 4689
Q ss_pred CeeEEEEEeCccccccCCCCCCCeEEEeecCCCCCCCCccccEEEEEEEEEecC
Q 001987 80 ELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTNKDCGKILLTISLNGKG 133 (985)
Q Consensus 80 ~~lG~~~i~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~~G~I~lsl~~~~~~ 133 (985)
++||++.++|.++..... ...|++|. ++... .....|+|.+.+.|.+.+
T Consensus 75 ~~lG~~~i~l~~l~~~~~---~~~~~~L~-~~~~~-~~~~~G~l~l~~~~~~~~ 123 (126)
T cd08678 75 KFLGLAIVPFDELRKNPS---GRQIFPLQ-GRPYE-GDSVSGSITVEFLFMEPA 123 (126)
T ss_pred ceEEEEEEeHHHhccCCc---eeEEEEec-CCCCC-CCCcceEEEEEEEEeccc
Confidence 999999999999986632 46899998 43221 245799999999997654
|
The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a |
| >cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.4e-16 Score=151.36 Aligned_cols=102 Identities=21% Similarity=0.297 Sum_probs=88.6
Q ss_pred CeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----EEEEeeeccCCCCCeEeEEEEEEeec-CCCCEEEEEEEecCC
Q 001987 535 GWVLTVALVEGVNLASSEMTGLSDPYVVFTCNG-----KTRTSSVQLQTCDPQWHDILEFDAME-EPPSVLDVEVFDFDG 608 (985)
Q Consensus 535 ~g~L~V~v~~a~~L~~~d~~g~~DPyv~v~~~~-----~~~kT~~~~~tlnP~Wne~f~f~v~~-~~~~~L~v~V~D~d~ 608 (985)
.+.|.|+|++|+||++.+ .|.+||||++++.. .+.+|+++++++||+|||+|.|.+.. .....|.|+|||+|.
T Consensus 11 ~~~L~V~Vi~ar~L~~~~-~g~~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~nE~F~f~v~~~~~~~~l~v~V~~~~~ 89 (119)
T cd08685 11 NRKLTLHVLEAKGLRSTN-SGTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLFHETFSFDVNERDYQKRLLVTVWNKLS 89 (119)
T ss_pred CCEEEEEEEEEECCCCCC-CCCCCeeEEEEEEeCCCCcceEeCccccCCCCCccccEEEEEcChHHhCCEEEEEEECCCC
Confidence 468999999999999999 89999999999952 46799999999999999999999643 234579999999997
Q ss_pred CCC-CCCccceEEEEeeccccCcccceEEEc
Q 001987 609 PFD-QATSLGHAEINFLKHTSTELADMWVSL 638 (985)
Q Consensus 609 ~~~-~dd~lG~~~i~l~~l~~~~~~~~w~~L 638 (985)
.+ ++++||++.|+|.++..+...+.||.|
T Consensus 90 -~~~~~~~lG~~~i~l~~~~~~~~~~~Wy~l 119 (119)
T cd08685 90 -KSRDSGLLGCMSFGVKSIVNQKEISGWYYL 119 (119)
T ss_pred -CcCCCEEEEEEEecHHHhccCccccceEeC
Confidence 55 478999999999999877778899986
|
This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho |
| >cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Probab=99.68 E-value=6.8e-16 Score=147.21 Aligned_cols=112 Identities=23% Similarity=0.482 Sum_probs=96.1
Q ss_pred cEEEEEEEEeecCC------CCCcEEEEEECCeEEeecCccCCCCCeEeeEEEEEEecCCCceEEEEEEecCCCCCCCCC
Q 001987 4 TRLYVYVLQGQDLL------AKDSYVKVQIGKHKSKSRILKNNSNPVWNEEFVFRVHNIDDEELVVSVFQHNDDSGLFGS 77 (985)
Q Consensus 4 ~~L~V~V~~Ar~L~------~~DPyv~v~l~~~~~kT~v~~~t~nP~wnE~f~f~v~~~~~~~L~~~V~D~d~~~~~~~~ 77 (985)
+.|.|+|++|+||+ .+||||+|++++..++|+++++++||.|||+|.|.+. .....|.|+|||++ . .+
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~~~~~-~~~~~l~~~v~d~~---~--~~ 74 (119)
T cd08377 1 GFLQVKVIRASGLAAADIGGKSDPFCVLELVNARLQTHTIYKTLNPEWNKIFTFPIK-DIHDVLEVTVYDED---K--DK 74 (119)
T ss_pred CEEEEEEEeeeCCCCCCCCCCCCcEEEEEECCEeeecceecCCcCCccCcEEEEEec-CcCCEEEEEEEECC---C--CC
Confidence 57999999999998 6899999999998899999999999999999999984 34688999999999 3 57
Q ss_pred CCCeeEEEEEeCccccccCCCCCCCeEEEeecCCCCCCCCccccEEEEEEEE
Q 001987 78 SGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTNKDCGKILLTISL 129 (985)
Q Consensus 78 ~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~~G~I~lsl~~ 129 (985)
++++||++.+++.++..+ ...||+|.++ ..+ ....|+|+|++.+
T Consensus 75 ~~~~iG~~~~~l~~~~~~-----~~~~~~l~~~-~~~--~~~~G~i~l~~~~ 118 (119)
T cd08377 75 KPEFLGKVAIPLLSIKNG-----ERKWYALKDK-KLR--TRAKGSILLEMDV 118 (119)
T ss_pred CCceeeEEEEEHHHCCCC-----CceEEECccc-CCC--CceeeEEEEEEEe
Confidence 899999999999998644 4579999833 222 4579999999876
|
MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran |
| >cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2) | Back alignment and domain information |
|---|
Probab=99.67 E-value=4.1e-16 Score=148.74 Aligned_cols=108 Identities=27% Similarity=0.421 Sum_probs=93.1
Q ss_pred EEEEEEEeecCC------CCCcEEEEEECC---eEEeecCccCCCCCeEeeEEEEEEecCCCceEEEEEEecCCCCCCCC
Q 001987 6 LYVYVLQGQDLL------AKDSYVKVQIGK---HKSKSRILKNNSNPVWNEEFVFRVHNIDDEELVVSVFQHNDDSGLFG 76 (985)
Q Consensus 6 L~V~V~~Ar~L~------~~DPyv~v~l~~---~~~kT~v~~~t~nP~wnE~f~f~v~~~~~~~L~~~V~D~d~~~~~~~ 76 (985)
|.|+|++|+||+ .+||||++++.+ .++||+++++++||.|||+|.|.+.......|.|+|||+| + .
T Consensus 2 L~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~vv~~t~nP~Wne~f~f~i~~~~~~~l~v~v~d~d---~--~ 76 (119)
T cd04036 2 LTVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRIQSQVKNVLELTVMDED---Y--V 76 (119)
T ss_pred eEEEEEEeeCCCccCCCCCCCcEEEEEEcCCCCccCccceecCCCCCccceEEEEEeCcccCCEEEEEEEECC---C--C
Confidence 789999999998 689999999963 5689999999999999999999986555678999999999 4 4
Q ss_pred CCCCeeEEEEEeCccccccCCCCCCCeEEEeecCCCCCCCCccccEEEEEEEEE
Q 001987 77 SSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTNKDCGKILLTISLN 130 (985)
Q Consensus 77 ~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~~G~I~lsl~~~ 130 (985)
++++||++.++|.++..+ .....|++|. .+..|+|.+.+.++
T Consensus 77 -~~~~iG~~~~~l~~l~~g---~~~~~~~~L~--------~~~~g~l~~~~~~~ 118 (119)
T cd04036 77 -MDDHLGTVLFDVSKLKLG---EKVRVTFSLN--------PQGKEELEVEFLLE 118 (119)
T ss_pred -CCcccEEEEEEHHHCCCC---CcEEEEEECC--------CCCCceEEEEEEee
Confidence 899999999999998865 3478899998 33579999888764
|
A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o |
| >cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4 | Back alignment and domain information |
|---|
Probab=99.67 E-value=5.9e-16 Score=148.58 Aligned_cols=115 Identities=24% Similarity=0.453 Sum_probs=96.3
Q ss_pred EEEEEEEEeecCC------CCCcEEEEEECCeEEeecCccCCCCCeEeeEEEEEEecCCCceEEEEEEecCCCCCCCCCC
Q 001987 5 RLYVYVLQGQDLL------AKDSYVKVQIGKHKSKSRILKNNSNPVWNEEFVFRVHNIDDEELVVSVFQHNDDSGLFGSS 78 (985)
Q Consensus 5 ~L~V~V~~Ar~L~------~~DPyv~v~l~~~~~kT~v~~~t~nP~wnE~f~f~v~~~~~~~L~~~V~D~d~~~~~~~~~ 78 (985)
+|+|+|++|++|+ .+||||+|++++.+.+|+++++++||.|||+|.|.+.......|.|+|||++ . .++
T Consensus 1 ~L~v~vi~a~~L~~~d~~~~~DPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~~~v~d~~---~--~~~ 75 (123)
T cd04025 1 RLRCHVLEARDLAPKDRNGTSDPFVRVFYNGQTLETSVVKKSCYPRWNEVFEFELMEGADSPLSVEVWDWD---L--VSK 75 (123)
T ss_pred CEEEEEEEeeCCCCCCCCCCcCceEEEEECCEEEeceeecCCCCCccCcEEEEEcCCCCCCEEEEEEEECC---C--CCC
Confidence 5899999999997 6899999999998999999999999999999999986555788999999999 4 578
Q ss_pred CCeeEEEEEeCccccccCCCCCCCeEEEeecCCCCC-CCCccccEEEEEE
Q 001987 79 GELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRK-FTNKDCGKILLTI 127 (985)
Q Consensus 79 d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~~~~~~~-~~~~~~G~I~lsl 127 (985)
+++||++.++|.++...+ ....||.|.+....+ ...+..|.|.|.+
T Consensus 76 ~~~iG~~~~~l~~l~~~~---~~~~w~~L~~~~~~~~~~~~~~G~l~~~~ 122 (123)
T cd04025 76 NDFLGKVVFSIQTLQQAK---QEEGWFRLLPDPRAEEESGGNLGSLRLKV 122 (123)
T ss_pred CcEeEEEEEEHHHcccCC---CCCCEEECCCCCCCCccccCceEEEEEEe
Confidence 999999999999987542 357899998332221 2356788888865
|
RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a |
| >cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins | Back alignment and domain information |
|---|
Probab=99.67 E-value=3.6e-16 Score=150.96 Aligned_cols=104 Identities=24% Similarity=0.351 Sum_probs=92.6
Q ss_pred CeEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CEEEEeeeccCCCCCeEeEEEEEEeecC--CCCEEEEEEEecC
Q 001987 535 GWVLTVALVEGVNLASSEMTGLSDPYVVFTCN-----GKTRTSSVQLQTCDPQWHDILEFDAMEE--PPSVLDVEVFDFD 607 (985)
Q Consensus 535 ~g~L~V~v~~a~~L~~~d~~g~~DPyv~v~~~-----~~~~kT~~~~~tlnP~Wne~f~f~v~~~--~~~~L~v~V~D~d 607 (985)
.+.|+|+|++|+||+..|..+.+||||++++. ..+++|+++++++||+|||+|.|.+... ....|.|.|||++
T Consensus 15 ~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~~~nP~wne~f~f~i~~~~l~~~~l~i~v~~~~ 94 (127)
T cd04030 15 RQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFPVSLEELKRRTLDVAVKNSK 94 (127)
T ss_pred CCEEEEEEEEEECCCCccCCCCCCceEEEEEEcCCCCCceEecccccCCCCCEECeEEEEecCHHHhcCCEEEEEEEECC
Confidence 46899999999999999999999999999995 4678999999999999999999996432 3468999999999
Q ss_pred CCC--CCCCccceEEEEeeccccCcccceEEEcc
Q 001987 608 GPF--DQATSLGHAEINFLKHTSTELADMWVSLE 639 (985)
Q Consensus 608 ~~~--~~dd~lG~~~i~l~~l~~~~~~~~w~~L~ 639 (985)
. + +++++||++.|+|.++..+.....|++|.
T Consensus 95 ~-~~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~ 127 (127)
T cd04030 95 S-FLSREKKLLGQVLIDLSDLDLSKGFTQWYDLT 127 (127)
T ss_pred c-ccCCCCceEEEEEEecccccccCCccceEECc
Confidence 7 5 68999999999999998888889999984
|
KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1 |
| >cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins | Back alignment and domain information |
|---|
Probab=99.67 E-value=4.7e-16 Score=146.28 Aligned_cols=96 Identities=25% Similarity=0.484 Sum_probs=84.4
Q ss_pred cEEEEEEEEeecCC---CCCcEEEEEECCeEEeecCccCCCCCeEeeEEEEEEecCCCceEEEEEEecCCCCCCCCCCCC
Q 001987 4 TRLYVYVLQGQDLL---AKDSYVKVQIGKHKSKSRILKNNSNPVWNEEFVFRVHNIDDEELVVSVFQHNDDSGLFGSSGE 80 (985)
Q Consensus 4 ~~L~V~V~~Ar~L~---~~DPyv~v~l~~~~~kT~v~~~t~nP~wnE~f~f~v~~~~~~~L~~~V~D~d~~~~~~~~~d~ 80 (985)
+.|.|+|++||+|+ ..||||+|++++++.+|++.++ .||.|||+|.|.+.. ....|.|+|||+| . ..||
T Consensus 2 ~~L~V~Vv~Ar~L~~~~~~dPYV~Ik~g~~k~kT~v~~~-~nP~WnE~F~F~~~~-~~~~L~v~V~dkd---~---~~DD 73 (127)
T cd08394 2 SLLCVLVKKAKLDGAPDKFNTYVTLKVQNVKSTTIAVRG-SQPCWEQDFMFEINR-LDLGLVIELWNKG---L---IWDT 73 (127)
T ss_pred ceEEEEEEEeeCCCCCCCCCCeEEEEECCEEeEeeECCC-CCCceeeEEEEEEcC-CCCEEEEEEEeCC---C---cCCC
Confidence 58999999999999 6699999999999999999988 599999999999944 4445999999999 3 4999
Q ss_pred eeEEEEEeCccccccCCCCCCCeEEEee
Q 001987 81 LMGRVRVPVSSIAAEDNHMLPPTWFSLE 108 (985)
Q Consensus 81 ~lG~~~i~L~~l~~~~~~~~~~~W~~L~ 108 (985)
|||++.|||.++..++. ....+||+|.
T Consensus 74 ~lG~v~i~L~~v~~~~~-~~~~~Wy~L~ 100 (127)
T cd08394 74 LVGTVWIPLSTIRQSNE-EGPGEWLTLD 100 (127)
T ss_pred ceEEEEEEhHHcccCCC-CCCCccEecC
Confidence 99999999999987733 4568999998
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi |
| >cd04011 C2B_Ferlin C2 domain second repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.67 E-value=3.3e-16 Score=147.39 Aligned_cols=101 Identities=21% Similarity=0.384 Sum_probs=89.0
Q ss_pred CeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCEEEEeeeccCCCCCeEeEEEEEEeecCC----CCEEEEEEEecCCCC
Q 001987 535 GWVLTVALVEGVNLASSEMTGLSDPYVVFTCNGKTRTSSVQLQTCDPQWHDILEFDAMEEP----PSVLDVEVFDFDGPF 610 (985)
Q Consensus 535 ~g~L~V~v~~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~~~~~tlnP~Wne~f~f~v~~~~----~~~L~v~V~D~d~~~ 610 (985)
.+.|+|+|++|++|+ +|.+||||++++++++.+|+++++++||.|||+|.|.+..+. ...|.|+|||+|. +
T Consensus 3 ~~~l~V~v~~a~~L~----~~~~dpyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~~-~ 77 (111)
T cd04011 3 DFQVRVRVIEARQLV----GGNIDPVVKVEVGGQKKYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVYDSRS-L 77 (111)
T ss_pred cEEEEEEEEEcccCC----CCCCCCEEEEEECCEeeeeeEEeccCCCccccEEEEecCCCHHHHhcCeEEEEEEcCcc-c
Confidence 468999999999998 578999999999999999999999999999999999964332 4689999999998 7
Q ss_pred CCCCccceEEEEeeccccC---cccceEEEccc
Q 001987 611 DQATSLGHAEINFLKHTST---ELADMWVSLEG 640 (985)
Q Consensus 611 ~~dd~lG~~~i~l~~l~~~---~~~~~w~~L~~ 640 (985)
++|++||++.++|+++..+ .....|++|.+
T Consensus 78 ~~~~~iG~~~i~l~~v~~~~~~~~~~~w~~L~~ 110 (111)
T cd04011 78 RSDTLIGSFKLDVGTVYDQPDHAFLRKWLLLTD 110 (111)
T ss_pred ccCCccEEEEECCccccCCCCCcceEEEEEeeC
Confidence 8899999999999998655 34678999974
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme |
| >cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1) | Back alignment and domain information |
|---|
Probab=99.67 E-value=6.9e-16 Score=151.75 Aligned_cols=126 Identities=19% Similarity=0.227 Sum_probs=102.0
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEE-----CCEEEEeeeccCCCCCeEeEEEEEEeecC--------CCCEEEEE
Q 001987 536 WVLTVALVEGVNLASSEMTGLSDPYVVFTC-----NGKTRTSSVQLQTCDPQWHDILEFDAMEE--------PPSVLDVE 602 (985)
Q Consensus 536 g~L~V~v~~a~~L~~~d~~g~~DPyv~v~~-----~~~~~kT~~~~~tlnP~Wne~f~f~v~~~--------~~~~L~v~ 602 (985)
+.|+|....+.+|++.+.++.+||||++++ +.++.||+++++|+||+|||+|.|.+... ....|.|+
T Consensus 4 ~el~i~~~~~~~l~~~~~~~~~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~~~ 83 (155)
T cd08690 4 IELTIVRCIGIPLPSGWNPKDLDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGLKFE 83 (155)
T ss_pred eEEEEEEeeccccCCCcCCCCCCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCcEEEE
Confidence 345555555555889998999999999997 24789999999999999999999996322 14579999
Q ss_pred EEecCCCC-CCCCccceEEEEeeccccCcccceEEEccccccCCcceeEEEEEeeecCCCcc
Q 001987 603 VFDFDGPF-DQATSLGHAEINFLKHTSTELADMWVSLEGKLAQSAQSKVHLRIFLENNNGVE 663 (985)
Q Consensus 603 V~D~d~~~-~~dd~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~g~l~l~~~ls~~~~~~ 663 (985)
|||.|. | .+|++||++.++|..+........|++|.. +..+.+|+|++++-+..+-...
T Consensus 84 V~d~~~-f~~~D~~iG~~~i~L~~l~~~~~~~~~~~L~~-~~k~~Gg~l~v~ir~r~p~~~~ 143 (155)
T cd08690 84 VYHKGG-FLRSDKLLGTAQVKLEPLETKCEIHESVDLMD-GRKATGGKLEVKVRLREPLTGK 143 (155)
T ss_pred EEeCCC-cccCCCeeEEEEEEcccccccCcceEEEEhhh-CCCCcCCEEEEEEEecCCCccc
Confidence 999997 6 579999999999999987777778999874 3446889999999876665443
|
Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha |
| >cd08680 C2_Kibra C2 domain found in Human protein Kibra | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.6e-16 Score=150.03 Aligned_cols=104 Identities=18% Similarity=0.236 Sum_probs=90.5
Q ss_pred CCeEEEEEEEEeecCCCCCCCCCCCcEEEEEEC------CEEEEeeeccCCCCCeEeEEEEEEeecC--CCCEEEEEEEe
Q 001987 534 DGWVLTVALVEGVNLASSEMTGLSDPYVVFTCN------GKTRTSSVQLQTCDPQWHDILEFDAMEE--PPSVLDVEVFD 605 (985)
Q Consensus 534 ~~g~L~V~v~~a~~L~~~d~~g~~DPyv~v~~~------~~~~kT~~~~~tlnP~Wne~f~f~v~~~--~~~~L~v~V~D 605 (985)
..+.|.|+|++|+||++.+..|.+||||++++- ..+++|+++++++||+|||+|.|.+... ....|.|+|||
T Consensus 12 ~~~~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t~nPvfnE~F~f~v~~~~L~~~~L~~~V~~ 91 (124)
T cd08680 12 GDSSLVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRTKALEDQDKPVFNEVFRVPISSTKLYQKTLQVDVCS 91 (124)
T ss_pred CCCEEEEEEeEecCCcccccCCCCCeEEEEEEccCCCCCCceEEcCccCCCCCCccccEEEEECCHHHhhcCEEEEEEEe
Confidence 356899999999999999989999999999983 2478999999999999999999996432 45699999999
Q ss_pred cCCCCCCCCccceEEEEeeccccCc-ccceEEEc
Q 001987 606 FDGPFDQATSLGHAEINFLKHTSTE-LADMWVSL 638 (985)
Q Consensus 606 ~d~~~~~dd~lG~~~i~l~~l~~~~-~~~~w~~L 638 (985)
+|. ++++++||++.|+|.++.... ....||+|
T Consensus 92 ~~~-~~~~~~lG~~~i~L~~~~~~~~~~~~Wy~l 124 (124)
T cd08680 92 VGP-DQQEECLGGAQISLADFESSEEMSTKWYNL 124 (124)
T ss_pred CCC-CCceeEEEEEEEEhhhccCCCccccccccC
Confidence 998 799999999999999985553 57789876
|
Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom |
| >cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Probab=99.67 E-value=5.8e-16 Score=148.79 Aligned_cols=117 Identities=20% Similarity=0.330 Sum_probs=99.2
Q ss_pred eEEEEEEEEeecCCCCC-CCCCCCcEEEEEECC--EEEEeeeccCCCCCeEeEEEEEEeecCCCCEEEEEEEecCCCCCC
Q 001987 536 WVLTVALVEGVNLASSE-MTGLSDPYVVFTCNG--KTRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGPFDQ 612 (985)
Q Consensus 536 g~L~V~v~~a~~L~~~d-~~g~~DPyv~v~~~~--~~~kT~~~~~tlnP~Wne~f~f~v~~~~~~~L~v~V~D~d~~~~~ 612 (985)
|.|+|+|++|+||+..+ ..+.+||||++++++ +..+|+++++++||.|||.|.|.+. .....|.|+|||+|. +++
T Consensus 2 g~l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~~~~~kT~~~~~~~~P~Wne~~~~~v~-~~~~~l~~~v~d~~~-~~~ 79 (124)
T cd04044 2 GVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNRRELARTKVKKDTSNPVWNETKYILVN-SLTEPLNLTVYDFND-KRK 79 (124)
T ss_pred eEEEEEEEcccCCCcccccCCCCCCeEEEEECCCCcceEeeeecCCCCCcceEEEEEEeC-CCCCEEEEEEEecCC-CCC
Confidence 68999999999999766 457799999999987 7899999999999999999999954 567899999999998 689
Q ss_pred CCccceEEEEeeccccCcccc-eEEEccccccCCcceeEEEEEee
Q 001987 613 ATSLGHAEINFLKHTSTELAD-MWVSLEGKLAQSAQSKVHLRIFL 656 (985)
Q Consensus 613 dd~lG~~~i~l~~l~~~~~~~-~w~~L~~~~~~~~~g~l~l~~~l 656 (985)
|++||++.++|.++..+.... .|..|.... ...|.|++.+.+
T Consensus 80 d~~iG~~~~~l~~l~~~~~~~~~~~~~~~~~--k~~G~i~~~l~~ 122 (124)
T cd04044 80 DKLIGTAEFDLSSLLQNPEQENLTKNLLRNG--KPVGELNYDLRF 122 (124)
T ss_pred CceeEEEEEEHHHhccCccccCcchhhhcCC--ccceEEEEEEEe
Confidence 999999999999988766554 456665322 346999999865
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. |
| >cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16 | Back alignment and domain information |
|---|
Probab=99.67 E-value=3.6e-16 Score=150.00 Aligned_cols=104 Identities=14% Similarity=0.257 Sum_probs=91.8
Q ss_pred CeEEEEEEEEeecCCCCCCCCCCCcEEEEEEC---CEEEEeeeccCCCCCeEeEEEEEE-eec--CCCCEEEEEEEecCC
Q 001987 535 GWVLTVALVEGVNLASSEMTGLSDPYVVFTCN---GKTRTSSVQLQTCDPQWHDILEFD-AME--EPPSVLDVEVFDFDG 608 (985)
Q Consensus 535 ~g~L~V~v~~a~~L~~~d~~g~~DPyv~v~~~---~~~~kT~~~~~tlnP~Wne~f~f~-v~~--~~~~~L~v~V~D~d~ 608 (985)
.+.|.|+|++|+||++.+..|.+||||++.+. .++++|+++++ +||+|||+|.|. +.. .....|.|+|||+|.
T Consensus 15 ~~~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~~~~~~kTkv~~~-~nP~fnE~F~f~~i~~~~l~~~~L~~~V~~~~~ 93 (124)
T cd08389 15 ARKLTVTVIRAQDIPTKDRGGASSWQVHLVLLPSKKQRAKTKVQRG-PNPVFNETFTFSRVEPEELNNMALRFRLYGVER 93 (124)
T ss_pred CCEEEEEEEEecCCCchhcCCCCCcEEEEEEccCCcceeecccccC-CCCcccCEEEECCCCHHHhccCEEEEEEEECCC
Confidence 45899999999999999999999999998773 46789999887 999999999998 422 235689999999998
Q ss_pred CCCCCCccceEEEEeeccccCcccceEEEccc
Q 001987 609 PFDQATSLGHAEINFLKHTSTELADMWVSLEG 640 (985)
Q Consensus 609 ~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~~ 640 (985)
++++++||++.|+|.++..+.....|++|++
T Consensus 94 -~~~~~~lG~~~i~L~~l~~~~~~~~w~~L~p 124 (124)
T cd08389 94 -MRKERLIGEKVVPLSQLNLEGETTVWLTLEP 124 (124)
T ss_pred -cccCceEEEEEEeccccCCCCCceEEEeCCC
Confidence 8999999999999999988888999999974
|
Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle |
| >cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3) | Back alignment and domain information |
|---|
Probab=99.67 E-value=4.7e-16 Score=152.86 Aligned_cols=98 Identities=26% Similarity=0.514 Sum_probs=83.8
Q ss_pred EEEEEEEEeecCC----CCCcEEEEEECC-----eEEeecCccCCCCCeEeeEEEEEEe---------------cCCCce
Q 001987 5 RLYVYVLQGQDLL----AKDSYVKVQIGK-----HKSKSRILKNNSNPVWNEEFVFRVH---------------NIDDEE 60 (985)
Q Consensus 5 ~L~V~V~~Ar~L~----~~DPyv~v~l~~-----~~~kT~v~~~t~nP~wnE~f~f~v~---------------~~~~~~ 60 (985)
+|.|+|++|+||+ .+||||+|++.+ .+++|+++++|+||+|||+|.|.+. +.....
T Consensus 1 kL~V~Vi~ArnL~~~~g~sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~~~~ 80 (148)
T cd04010 1 KLSVRVIECSDLALKNGTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAEKLE 80 (148)
T ss_pred CEEEEEEeCcCCCCCCCCCCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEecccccccccccCCcccccEEE
Confidence 5899999999998 799999999976 5689999999999999999999984 223468
Q ss_pred EEEEEEecCCCCCCCCCCCCeeEEEEEeCccccccCCCCCCCeEEEeec
Q 001987 61 LVVSVFQHNDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLET 109 (985)
Q Consensus 61 L~~~V~D~d~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~~ 109 (985)
|.|.|||++ . .++++|||++.|||.++.... .....||+|.+
T Consensus 81 L~i~V~d~~---~--~~~ddfLG~v~i~l~~l~~~~--~~~~~W~~L~~ 122 (148)
T cd04010 81 LRVDLWHAS---M--GGGDVFLGEVRIPLRGLDLQA--GSHQAWYFLQP 122 (148)
T ss_pred EEEEEEcCC---C--CCCCceeEEEEEecccccccC--CcCcceeecCC
Confidence 999999999 4 578999999999999998651 23578999983
|
RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain |
| >cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=99.66 E-value=4.4e-16 Score=148.82 Aligned_cols=97 Identities=27% Similarity=0.551 Sum_probs=85.1
Q ss_pred CcEEEEEEEEeecCC-----CCCcEEEEEECC-----eEEeecCccCCCCCeEeeEEEEEE-e--cCCCceEEEEEEecC
Q 001987 3 STRLYVYVLQGQDLL-----AKDSYVKVQIGK-----HKSKSRILKNNSNPVWNEEFVFRV-H--NIDDEELVVSVFQHN 69 (985)
Q Consensus 3 ~~~L~V~V~~Ar~L~-----~~DPyv~v~l~~-----~~~kT~v~~~t~nP~wnE~f~f~v-~--~~~~~~L~~~V~D~d 69 (985)
.+.|.|+|++|+||+ .+||||+|++.+ .++||+++++++||.|||+|.|.+ + +.....|.|+|||+|
T Consensus 12 ~~~L~V~Vi~A~~L~~~~~~~~DpyVkv~l~~~~~~~~~~kT~v~~~~~nP~wnE~F~f~~~~~~~l~~~~L~~~V~d~d 91 (122)
T cd08381 12 NGTLFVMVMHAKNLPLLDGSDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEMLVYDGLPVEDLQQRVLQVSVWSHD 91 (122)
T ss_pred CCEEEEEEEEeeCCCCCCCCCCCCEEEEEEeeCCccCCceeCCccCCCCCCCcccEEEEecCChHHhCCCEEEEEEEeCC
Confidence 478999999999998 689999999973 468999999999999999999996 4 567789999999999
Q ss_pred CCCCCCCCCCCeeEEEEEeCccccccCCCCCCCeEEEe
Q 001987 70 DDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSL 107 (985)
Q Consensus 70 ~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L 107 (985)
+ .+++++||++.++|.++...+ ....||+|
T Consensus 92 ---~--~~~~~~lG~~~i~l~~l~~~~---~~~~W~~L 121 (122)
T cd08381 92 ---S--LVENEFLGGVCIPLKKLDLSQ---ETEKWYPL 121 (122)
T ss_pred ---C--CcCCcEEEEEEEeccccccCC---CccceEEC
Confidence 5 578999999999999998652 36789987
|
There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut |
| >KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.8e-16 Score=151.60 Aligned_cols=89 Identities=34% Similarity=0.603 Sum_probs=82.6
Q ss_pred CCCcEEEEEEEEeecCC------CCCcEEEEEECCeEEeecCccCCCCCeEeeEEEEEEecCCCceEEEEEEecCCCCCC
Q 001987 1 MVSTRLYVYVLQGQDLL------AKDSYVKVQIGKHKSKSRILKNNSNPVWNEEFVFRVHNIDDEELVVSVFQHNDDSGL 74 (985)
Q Consensus 1 ~~~~~L~V~V~~Ar~L~------~~DPyv~v~l~~~~~kT~v~~~t~nP~wnE~f~f~v~~~~~~~L~~~V~D~d~~~~~ 74 (985)
|.-+.|+|+|++|.||. ++||||++.+++++.||+++.+++||+|||+|.|.+ ......|.++|||+| .
T Consensus 3 ~~vGLL~v~v~~g~~L~~rD~~~sSDPyVVl~lg~q~lkT~~v~~n~NPeWNe~ltf~v-~d~~~~lkv~VyD~D---~- 77 (168)
T KOG1030|consen 3 MLVGLLRVRVKRGKNLAIRDFLGSSDPYVVLELGNQKLKTRVVYKNLNPEWNEELTFTV-KDPNTPLKVTVYDKD---T- 77 (168)
T ss_pred ccceEEEEEEEeecCeeeeccccCCCCeEEEEECCeeeeeeeecCCCCCcccceEEEEe-cCCCceEEEEEEeCC---C-
Confidence 45689999999999998 799999999999999999999999999999999999 577788999999999 5
Q ss_pred CCCCCCeeEEEEEeCcccccc
Q 001987 75 FGSSGELMGRVRVPVSSIAAE 95 (985)
Q Consensus 75 ~~~~d~~lG~~~i~L~~l~~~ 95 (985)
.+.|||||++.|||..+...
T Consensus 78 -fs~dD~mG~A~I~l~p~~~~ 97 (168)
T KOG1030|consen 78 -FSSDDFMGEATIPLKPLLEA 97 (168)
T ss_pred -CCcccccceeeeccHHHHHH
Confidence 57999999999999999865
|
|
| >cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Probab=99.66 E-value=5.7e-16 Score=146.82 Aligned_cols=112 Identities=30% Similarity=0.463 Sum_probs=98.0
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECC-EEEEeeeccCCCCCeEeEEEEEEeecCCCCEEEEEEEecCCCCCCCCcc
Q 001987 538 LTVALVEGVNLASSEMTGLSDPYVVFTCNG-KTRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGPFDQATSL 616 (985)
Q Consensus 538 L~V~v~~a~~L~~~d~~g~~DPyv~v~~~~-~~~kT~~~~~tlnP~Wne~f~f~v~~~~~~~L~v~V~D~d~~~~~dd~l 616 (985)
|+|+|++|++|+..+..|.+||||++.+++ +.++|+++.+++||+|||+|.|.+.......|.|+|||+|. ++++++|
T Consensus 1 l~v~vi~a~~L~~~~~~~~~dpyv~v~~~~~~~~~T~v~~~~~~P~Wne~f~~~~~~~~~~~l~~~v~d~~~-~~~~~~i 79 (115)
T cd04040 1 LTVDVISAENLPSADRNGKSDPFVKFYLNGEKVFKTKTIKKTLNPVWNESFEVPVPSRVRAVLKVEVYDWDR-GGKDDLL 79 (115)
T ss_pred CEEEEEeeeCCCCCCCCCCCCCeEEEEECCCcceeeceecCCCCCcccccEEEEeccCCCCEEEEEEEeCCC-CCCCCce
Confidence 579999999999999889999999999975 45799999999999999999999655567799999999998 6899999
Q ss_pred ceEEEEeeccccCcccceEEEccccccCCcceeEE
Q 001987 617 GHAEINFLKHTSTELADMWVSLEGKLAQSAQSKVH 651 (985)
Q Consensus 617 G~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~g~l~ 651 (985)
|++.+++.++..+...+.|++|.++++. ..|.+.
T Consensus 80 G~~~~~l~~l~~~~~~~~~~~L~~~g~~-~~~~~~ 113 (115)
T cd04040 80 GSAYIDLSDLEPEETTELTLPLDGQGGG-KLGAVF 113 (115)
T ss_pred EEEEEEHHHcCCCCcEEEEEECcCCCCc-cCceEE
Confidence 9999999999888888999999875443 445554
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. |
| >cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3 | Back alignment and domain information |
|---|
Probab=99.66 E-value=5.3e-16 Score=149.24 Aligned_cols=101 Identities=26% Similarity=0.403 Sum_probs=87.4
Q ss_pred CcEEEEEEEEeecCC-------CCCcEEEEEECC-----eEEeecCccCCCCCeEeeEEEEEEe--cCCCceEEEEEEec
Q 001987 3 STRLYVYVLQGQDLL-------AKDSYVKVQIGK-----HKSKSRILKNNSNPVWNEEFVFRVH--NIDDEELVVSVFQH 68 (985)
Q Consensus 3 ~~~L~V~V~~Ar~L~-------~~DPyv~v~l~~-----~~~kT~v~~~t~nP~wnE~f~f~v~--~~~~~~L~~~V~D~ 68 (985)
.+.|.|+|++|+||+ .+||||++++.+ .++||+++++++||+|||+|.|.++ ......|.|.|||.
T Consensus 14 ~~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~~~k~kT~v~~~t~nPvfNE~F~f~v~~~~l~~~~L~v~V~~~ 93 (128)
T cd08392 14 TSCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKRKTAVKKGTVNPVFNETLKYVVEADLLSSRQLQVSVWHS 93 (128)
T ss_pred CCEEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCcccceeecccccCCCCCccceEEEEEcCHHHhCCcEEEEEEEeC
Confidence 478999999999997 479999999973 3679999999999999999999986 34568999999999
Q ss_pred CCCCCCCCCCCCeeEEEEEeCccccccCCCCCCCeEEEee
Q 001987 69 NDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLE 108 (985)
Q Consensus 69 d~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~ 108 (985)
+ + .+++++||++.|+|.++...+.......||+|.
T Consensus 94 ~---~--~~~~~~lG~~~i~L~~~~~~~~~~~~~~W~~l~ 128 (128)
T cd08392 94 R---T--LKRRVFLGEVLIPLADWDFEDTDSQRFLWYPLN 128 (128)
T ss_pred C---C--CcCcceEEEEEEEcCCcccCCCCccccceEECc
Confidence 9 4 578999999999999998765445678999983
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids |
| >cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Probab=99.66 E-value=1e-15 Score=146.42 Aligned_cols=109 Identities=28% Similarity=0.603 Sum_probs=95.4
Q ss_pred cEEEEEEEEeecCC------------CCCcEEEEEECCeEEeecCccCCCCCeEeeEEEEEEecCCCceEEEEEEecCCC
Q 001987 4 TRLYVYVLQGQDLL------------AKDSYVKVQIGKHKSKSRILKNNSNPVWNEEFVFRVHNIDDEELVVSVFQHNDD 71 (985)
Q Consensus 4 ~~L~V~V~~Ar~L~------------~~DPyv~v~l~~~~~kT~v~~~t~nP~wnE~f~f~v~~~~~~~L~~~V~D~d~~ 71 (985)
+.|+|+|++|+||+ .+||||+|++++..++|+++++++||.|||+|.|.+.....+.|.|+|||++
T Consensus 1 g~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~~~~~kT~~~~~t~~P~W~e~f~~~v~~~~~~~l~i~v~d~~-- 78 (121)
T cd08391 1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQTFKSKVIKENLNPKWNEVYEAVVDEVPGQELEIELFDED-- 78 (121)
T ss_pred CeEEEEEEEccCCcccccccccCCCCCcCCEEEEEECCEeEEccccCCCCCCcccceEEEEeCCCCCCEEEEEEEecC--
Confidence 57999999999998 2699999999999999999999999999999999986667789999999999
Q ss_pred CCCCCCCCCeeEEEEEeCccccccCCCCCCCeEEEeecCCCCCCCCccccEEEEEEEE
Q 001987 72 SGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTNKDCGKILLTISL 129 (985)
Q Consensus 72 ~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~~G~I~lsl~~ 129 (985)
. . ++++||++.++|.++..++ ....||+|. ....|+|++.++|
T Consensus 79 -~--~-~~~~iG~~~i~l~~l~~~~---~~~~w~~L~--------~~~~G~~~~~~~~ 121 (121)
T cd08391 79 -P--D-KDDFLGRLSIDLGSVEKKG---FIDEWLPLE--------DVKSGRLHLKLEW 121 (121)
T ss_pred -C--C-CCCcEEEEEEEHHHhcccC---ccceEEECc--------CCCCceEEEEEeC
Confidence 3 3 8899999999999987542 367999998 2357999998865
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular |
| >cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene | Back alignment and domain information |
|---|
Probab=99.66 E-value=5.6e-16 Score=148.94 Aligned_cols=105 Identities=23% Similarity=0.377 Sum_probs=95.0
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEECCEEEEeeeccC-CCCCeEeEEEEEEeecC---CCCEEEEEEEecCCCCC
Q 001987 536 WVLTVALVEGVNLASSEMTGLSDPYVVFTCNGKTRTSSVQLQ-TCDPQWHDILEFDAMEE---PPSVLDVEVFDFDGPFD 611 (985)
Q Consensus 536 g~L~V~v~~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~~~~~-tlnP~Wne~f~f~v~~~---~~~~L~v~V~D~d~~~~ 611 (985)
|.|.|+|++|++|+..+..+.+||||+++++++.++|+++++ ++||.|||.|.|.+... ....|.|+|||++. ++
T Consensus 1 g~L~V~V~~A~~L~~~~~~~~~dpyv~v~~~~~~~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~-~~ 79 (124)
T cd04049 1 GTLEVLLISAKGLQDTDFLGKIDPYVIIQCRTQERKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKDN-FS 79 (124)
T ss_pred CeEEEEEEecCCCCCCCCCCCcCceEEEEECCEeeeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECcc-CC
Confidence 589999999999999998999999999999999999999875 99999999999996444 25689999999998 78
Q ss_pred CCCccceEEEEeeccccCcccceEEEcccc
Q 001987 612 QATSLGHAEINFLKHTSTELADMWVSLEGK 641 (985)
Q Consensus 612 ~dd~lG~~~i~l~~l~~~~~~~~w~~L~~~ 641 (985)
+|++||++.++|.++..+...+.|++|.+.
T Consensus 80 ~d~~iG~~~i~l~~l~~~~~~~~~~~l~p~ 109 (124)
T cd04049 80 DDDFIGEATIHLKGLFEEGVEPGTAELVPA 109 (124)
T ss_pred CCCeEEEEEEEhHHhhhCCCCcCceEeecc
Confidence 999999999999999888888999999863
|
In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai |
| >cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Probab=99.66 E-value=7.2e-16 Score=146.90 Aligned_cols=102 Identities=25% Similarity=0.348 Sum_probs=91.3
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-EEEEeeeccCCCCCeEeEEEEEEeecCCCCEEEEEEEecCCCCCCCC
Q 001987 536 WVLTVALVEGVNLASSEMTGLSDPYVVFTCNG-KTRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGPFDQAT 614 (985)
Q Consensus 536 g~L~V~v~~a~~L~~~d~~g~~DPyv~v~~~~-~~~kT~~~~~tlnP~Wne~f~f~v~~~~~~~L~v~V~D~d~~~~~dd 614 (985)
|.|+|+|++|++|+..+..|.+||||++++++ ...+|+++++++||.|||.|.|.+ ..+...|.|+|||+|. +++|+
T Consensus 1 g~L~V~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v-~~~~~~L~v~v~d~~~-~~~d~ 78 (120)
T cd04045 1 GVLRLHIRKANDLKNLEGVGKIDPYVRVLVNGIVKGRTVTISNTLNPVWDEVLYVPV-TSPNQKITLEVMDYEK-VGKDR 78 (120)
T ss_pred CeEEEEEEeeECCCCccCCCCcCCEEEEEECCEEeeceeEECCCcCCccCceEEEEe-cCCCCEEEEEEEECCC-CCCCC
Confidence 68999999999999999999999999999987 568999999999999999999984 4456799999999998 79999
Q ss_pred ccceEEEEeeccccCcccceEEEccc
Q 001987 615 SLGHAEINFLKHTSTELADMWVSLEG 640 (985)
Q Consensus 615 ~lG~~~i~l~~l~~~~~~~~w~~L~~ 640 (985)
+||++.+++.++..+ ..+.||.|.+
T Consensus 79 ~IG~~~~~l~~l~~~-~~~~~~~~~~ 103 (120)
T cd04045 79 SLGSVEINVSDLIKK-NEDGKYVEYD 103 (120)
T ss_pred eeeEEEEeHHHhhCC-CCCceEEecC
Confidence 999999999998776 5677888775
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. |
| >cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4 | Back alignment and domain information |
|---|
Probab=99.66 E-value=4e-16 Score=156.39 Aligned_cols=106 Identities=22% Similarity=0.331 Sum_probs=93.9
Q ss_pred CCeEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CEEEEeeeccCCCCCeEeEEEEEEeec---CCCCEEEEEEEe
Q 001987 534 DGWVLTVALVEGVNLASSEMTGLSDPYVVFTCN-----GKTRTSSVQLQTCDPQWHDILEFDAME---EPPSVLDVEVFD 605 (985)
Q Consensus 534 ~~g~L~V~v~~a~~L~~~d~~g~~DPyv~v~~~-----~~~~kT~~~~~tlnP~Wne~f~f~v~~---~~~~~L~v~V~D 605 (985)
..|.|.|+|++|+||++.|..|.+||||++++. ..+++|+++++++||+|||.|.|.+.. .....|.|+|||
T Consensus 25 ~~g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~~~~~~~~kT~vi~~t~nP~WnE~f~f~~~~~~~l~~~~L~i~V~d 104 (162)
T cd04020 25 STGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVWNHTFVYDGVSPEDLSQACLELTVWD 104 (162)
T ss_pred CCceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcCCCCCcceeCCccCCCCCCCCCCEEEEecCCHHHhCCCEEEEEEEe
Confidence 467999999999999999999999999999883 467899999999999999999998432 234589999999
Q ss_pred cCCCCCCCCccceEEEEeeccccCcccceEEEccc
Q 001987 606 FDGPFDQATSLGHAEINFLKHTSTELADMWVSLEG 640 (985)
Q Consensus 606 ~d~~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~~ 640 (985)
+|. +++|++||++.+++..+......+.|+.|.+
T Consensus 105 ~d~-~~~d~~lG~v~i~l~~~~~~~~~~~w~~~~~ 138 (162)
T cd04020 105 HDK-LSSNDFLGGVRLGLGTGKSYGQAVDWMDSTG 138 (162)
T ss_pred CCC-CCCCceEEEEEEeCCccccCCCccccccCCh
Confidence 998 7899999999999999887777899999875
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin |
| >cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Probab=99.65 E-value=4.9e-16 Score=149.14 Aligned_cols=104 Identities=26% Similarity=0.371 Sum_probs=91.4
Q ss_pred CCeEEEEEEEEeecCCCCC-CCCCCCcEEEEEEC-----CEEEEeeeccCCCCCeEeEEEEEEeecC--CCCEEEEEEEe
Q 001987 534 DGWVLTVALVEGVNLASSE-MTGLSDPYVVFTCN-----GKTRTSSVQLQTCDPQWHDILEFDAMEE--PPSVLDVEVFD 605 (985)
Q Consensus 534 ~~g~L~V~v~~a~~L~~~d-~~g~~DPyv~v~~~-----~~~~kT~~~~~tlnP~Wne~f~f~v~~~--~~~~L~v~V~D 605 (985)
..+.|+|+|++|+||+..+ ..|.+||||++++. ..+.+|+++++++||+|||+|.|.+... ....|.|+|||
T Consensus 12 ~~~~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~i~~~~l~~~~l~i~v~d 91 (123)
T cd08521 12 KTGSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNETLKYHISKSQLETRTLQLSVWH 91 (123)
T ss_pred CCCEEEEEEEEecCCCCcCCCCCCCCcEEEEEEecCCCcCceeeccccCCCCCCcccceEEEeCCHHHhCCCEEEEEEEe
Confidence 3568999999999999998 78899999999983 1468999999999999999999996432 25689999999
Q ss_pred cCCCCCCCCccceEEEEeeccccCcccceEEEc
Q 001987 606 FDGPFDQATSLGHAEINFLKHTSTELADMWVSL 638 (985)
Q Consensus 606 ~d~~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L 638 (985)
+|. ++++++||++.++|.++..+...+.||+|
T Consensus 92 ~~~-~~~~~~iG~~~i~l~~l~~~~~~~~w~~l 123 (123)
T cd08521 92 HDR-FGRNTFLGEVEIPLDSWDLDSQQSEWYPL 123 (123)
T ss_pred CCC-CcCCceeeEEEEecccccccCCCccEEEC
Confidence 998 78999999999999999877778999987
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into |
| >cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins | Back alignment and domain information |
|---|
Probab=99.65 E-value=8.6e-16 Score=150.02 Aligned_cols=98 Identities=23% Similarity=0.415 Sum_probs=85.4
Q ss_pred CcEEEEEEEEeecCC-------CCCcEEEEEECC-----eEEeecCccCCCCCeEeeEEEEEEecCCCceEEEEEE-ecC
Q 001987 3 STRLYVYVLQGQDLL-------AKDSYVKVQIGK-----HKSKSRILKNNSNPVWNEEFVFRVHNIDDEELVVSVF-QHN 69 (985)
Q Consensus 3 ~~~L~V~V~~Ar~L~-------~~DPyv~v~l~~-----~~~kT~v~~~t~nP~wnE~f~f~v~~~~~~~L~~~V~-D~d 69 (985)
.+.|.|+|++|+||+ .+||||++++.+ .++||+++++|+||+|||+|.|.+. .....|.|+|| |++
T Consensus 28 ~~~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Llp~~~~~~k~KT~v~kktlnPvfNE~F~f~v~-l~~~~L~v~V~~d~~ 106 (146)
T cd04028 28 KGQLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEGKKCIAKKKTKIARKTLDPLYQQQLVFDVS-PTGKTLQVIVWGDYG 106 (146)
T ss_pred CCEEEEEEEEeeCCCcccCCCCCcCCeEEEEEECCCccccceeceecCCCCCCccCCeEEEEEc-CCCCEEEEEEEeCCC
Confidence 478999999999997 479999999964 3689999999999999999999995 78899999999 567
Q ss_pred CCCCCCCCCCCeeEEEEEeCccccccCCCCCCCeEEEeec
Q 001987 70 DDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLET 109 (985)
Q Consensus 70 ~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~~ 109 (985)
+ .++++|||++.|+|.++.... ....||+|.+
T Consensus 107 ---~--~~~~~~iG~~~i~L~~l~~~~---~~~~Wy~L~~ 138 (146)
T cd04028 107 ---R--MDKKVFMGVAQILLDDLDLSN---LVIGWYKLFP 138 (146)
T ss_pred ---C--CCCCceEEEEEEEcccccCCC---CceeEEecCC
Confidence 4 568999999999999997653 3578999983
|
RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as |
| >cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17 | Back alignment and domain information |
|---|
Probab=99.65 E-value=9.2e-16 Score=147.22 Aligned_cols=106 Identities=23% Similarity=0.352 Sum_probs=93.3
Q ss_pred CCeEEEEEEEEeecCCCCC-CCCCCCcEEEEEEC---CEEEEeeeccCCCCCeEeEEEEEEeecC--CCCEEEEEEEecC
Q 001987 534 DGWVLTVALVEGVNLASSE-MTGLSDPYVVFTCN---GKTRTSSVQLQTCDPQWHDILEFDAMEE--PPSVLDVEVFDFD 607 (985)
Q Consensus 534 ~~g~L~V~v~~a~~L~~~d-~~g~~DPyv~v~~~---~~~~kT~~~~~tlnP~Wne~f~f~v~~~--~~~~L~v~V~D~d 607 (985)
..+.|.|+|++|+||+..+ ..+.+||||++++. .+..+|+++++++||+|||.|.|.+... ....|.|+|||+|
T Consensus 12 ~~~~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~~~~~~T~v~~~~~~P~wne~f~f~i~~~~l~~~~l~i~v~d~~ 91 (123)
T cd08390 12 EEEQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRSLQSKVKRKTQNPNFDETFVFQVSFKELQRRTLRLSVYDVD 91 (123)
T ss_pred CCCEEEEEEEEecCCCCccCCCCCCCcEEEEEEeeCCCCceEeeeEcCCCCCccceEEEEEcCHHHhcccEEEEEEEECC
Confidence 3568999999999999998 68899999999983 4567899999999999999999996432 2458999999999
Q ss_pred CCCCCCCccceEEEEeeccccCcccceEEEccc
Q 001987 608 GPFDQATSLGHAEINFLKHTSTELADMWVSLEG 640 (985)
Q Consensus 608 ~~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~~ 640 (985)
. ++++++||++.++|.++......+.|++|++
T Consensus 92 ~-~~~~~~iG~~~i~L~~l~~~~~~~~w~~L~~ 123 (123)
T cd08390 92 R-FSRHCIIGHVLFPLKDLDLVKGGVVWRDLEP 123 (123)
T ss_pred c-CCCCcEEEEEEEeccceecCCCceEEEeCCC
Confidence 8 6889999999999999998888899999973
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat |
| >cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP) | Back alignment and domain information |
|---|
Probab=99.65 E-value=7.9e-16 Score=150.86 Aligned_cols=92 Identities=34% Similarity=0.550 Sum_probs=85.1
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEECCEEEEeeeccCCCCCeEeEEEEEEeecCCCCEEEEEEEecCCCCCCCCc
Q 001987 536 WVLTVALVEGVNLASSEMTGLSDPYVVFTCNGKTRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGPFDQATS 615 (985)
Q Consensus 536 g~L~V~v~~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~~~~~tlnP~Wne~f~f~v~~~~~~~L~v~V~D~d~~~~~dd~ 615 (985)
|.|+|+|++|+||+..|. +.+||||+++++++..+|+++++++||+|||+|.|.+ .++...|.|+|||+|. +++|++
T Consensus 2 G~L~V~Vi~a~nL~~~d~-~~sDPYV~v~~g~~~~kT~vvk~t~nP~WnE~f~f~i-~~~~~~l~~~V~D~d~-~~~dd~ 78 (145)
T cd04038 2 GLLKVRVVRGTNLAVRDF-TSSDPYVVLTLGNQKVKTRVIKKNLNPVWNEELTLSV-PNPMAPLKLEVFDKDT-FSKDDS 78 (145)
T ss_pred eEEEEEEEeeECCCCCCC-CCcCcEEEEEECCEEEEeeeEcCCCCCeecccEEEEe-cCCCCEEEEEEEECCC-CCCCCE
Confidence 789999999999999997 8999999999999999999999999999999999995 4557899999999998 899999
Q ss_pred cceEEEEeeccccCc
Q 001987 616 LGHAEINFLKHTSTE 630 (985)
Q Consensus 616 lG~~~i~l~~l~~~~ 630 (985)
||++.+++.++....
T Consensus 79 iG~a~i~l~~l~~~~ 93 (145)
T cd04038 79 MGEAEIDLEPLVEAA 93 (145)
T ss_pred EEEEEEEHHHhhhhh
Confidence 999999999976543
|
ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i |
| >cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins | Back alignment and domain information |
|---|
Probab=99.65 E-value=5.4e-16 Score=149.28 Aligned_cols=114 Identities=15% Similarity=0.225 Sum_probs=97.5
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECC-EEEEeeecc-CCCCCeEeEEEEEEeecCC----CCEEEEEEEecCCCC
Q 001987 537 VLTVALVEGVNLASSEMTGLSDPYVVFTCNG-KTRTSSVQL-QTCDPQWHDILEFDAMEEP----PSVLDVEVFDFDGPF 610 (985)
Q Consensus 537 ~L~V~v~~a~~L~~~d~~g~~DPyv~v~~~~-~~~kT~~~~-~tlnP~Wne~f~f~v~~~~----~~~L~v~V~D~d~~~ 610 (985)
.|+|+|++|++|+..+..+.+||||++++++ ++.+|+++. ++.||.|||.|.|.+.... ...|.|+|||++. +
T Consensus 1 ~L~V~V~sA~~L~~~~~~~~~dpYv~v~~~~~~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~~-~ 79 (125)
T cd04051 1 TLEITIISAEDLKNVNLFGKMKVYAVVWIDPSHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCERP-S 79 (125)
T ss_pred CEEEEEEEcccCCCCCcccCCceEEEEEECCCcccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECCC-C
Confidence 3799999999999999899999999999988 889999975 5899999999999964442 6799999999998 7
Q ss_pred CCCCccceEEEEeeccccCcc-----cceEEEccccccCCcceeEEE
Q 001987 611 DQATSLGHAEINFLKHTSTEL-----ADMWVSLEGKLAQSAQSKVHL 652 (985)
Q Consensus 611 ~~dd~lG~~~i~l~~l~~~~~-----~~~w~~L~~~~~~~~~g~l~l 652 (985)
++|++||++.|+|.++..+.. ...|++|..+.+. ..|.|++
T Consensus 80 ~~~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~~~g~-~~G~~~~ 125 (125)
T cd04051 80 LGDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRRPSGK-PQGVLNF 125 (125)
T ss_pred CCCCcEEEEEEEHHHhhcccCCCCcceeEEEEeECCCCC-cCeEEeC
Confidence 899999999999999876654 3789999975543 5677764
|
SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such |
| >cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs) | Back alignment and domain information |
|---|
Probab=99.64 E-value=7.2e-16 Score=150.38 Aligned_cols=103 Identities=23% Similarity=0.342 Sum_probs=92.9
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEEC----CEEEEeeeccCCCCCeEeEEEEEEeecC---------------CCCE
Q 001987 538 LTVALVEGVNLASSEMTGLSDPYVVFTCN----GKTRTSSVQLQTCDPQWHDILEFDAMEE---------------PPSV 598 (985)
Q Consensus 538 L~V~v~~a~~L~~~d~~g~~DPyv~v~~~----~~~~kT~~~~~tlnP~Wne~f~f~v~~~---------------~~~~ 598 (985)
|+|+|++|+||+.+ .+|.+||||+++++ ++..+|++++++.||.|||+|.|.+... ....
T Consensus 1 L~V~Vi~A~~L~~~-~~g~~dPyv~v~~~~~~~~~~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~~ 79 (137)
T cd08675 1 LSVRVLECRDLALK-SNGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKSE 79 (137)
T ss_pred CEEEEEEccCCCcc-cCCCCCcEEEEEEecCCcCCeeccceeeCCCCCCcceEEEEEccccccccccccccccccccccE
Confidence 57999999999998 78999999999998 7889999999999999999999996544 4568
Q ss_pred EEEEEEecCCCCCCCCccceEEEEeeccccCcccceEEEccccc
Q 001987 599 LDVEVFDFDGPFDQATSLGHAEINFLKHTSTELADMWVSLEGKL 642 (985)
Q Consensus 599 L~v~V~D~d~~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~~~~ 642 (985)
|.|+|||+|. ++++++||++.++|.++........|++|.++.
T Consensus 80 l~i~V~d~~~-~~~~~~IG~~~i~l~~l~~~~~~~~W~~L~~~~ 122 (137)
T cd08675 80 LRVELWHASM-VSGDDFLGEVRIPLQGLQQAGSHQAWYFLQPRE 122 (137)
T ss_pred EEEEEEcCCc-CcCCcEEEEEEEehhhccCCCcccceEecCCcC
Confidence 9999999998 689999999999999988777789999999754
|
RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin |
| >cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.9e-15 Score=145.84 Aligned_cols=115 Identities=33% Similarity=0.645 Sum_probs=93.7
Q ss_pred cEEEEEEEEeecCC------CCCcEEEEEECCeEEeecCccCCCCCeEeeEEEEEEecCCCceEEEEEEecCCCC-----
Q 001987 4 TRLYVYVLQGQDLL------AKDSYVKVQIGKHKSKSRILKNNSNPVWNEEFVFRVHNIDDEELVVSVFQHNDDS----- 72 (985)
Q Consensus 4 ~~L~V~V~~Ar~L~------~~DPyv~v~l~~~~~kT~v~~~t~nP~wnE~f~f~v~~~~~~~L~~~V~D~d~~~----- 72 (985)
.+|+|+|++|++|+ .+||||+|++++..++|+++++++||.|||+|.|.+. .....|.|+|||+|...
T Consensus 1 ~~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~~v~~t~~P~Wne~f~f~~~-~~~~~l~i~v~d~d~~~~~~~~ 79 (127)
T cd04027 1 AKISITVVCAQGLIAKDKTGTSDPYVTVQVGKTKKRTKTIPQNLNPVWNEKFHFECH-NSSDRIKVRVWDEDDDIKSRLK 79 (127)
T ss_pred CeEEEEEEECcCCcCCCCCCCcCcEEEEEECCEeeecceecCCCCCccceEEEEEec-CCCCEEEEEEEECCCCcccccc
Confidence 47999999999998 6899999999988899999999999999999999884 34578999999998210
Q ss_pred -CCCCCCCCeeEEEEEeCccccccCCCCCCCeEEEeecCCCCCCCCccccEEEEEE
Q 001987 73 -GLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTNKDCGKILLTI 127 (985)
Q Consensus 73 -~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~~G~I~lsl 127 (985)
++..+.+++||++.+++.++... ...||.|. ++..+ ...+|+|+|++
T Consensus 80 ~~~~~~~~~~iG~~~i~l~~~~~~-----~~~w~~L~-~~~~~--~~~~G~i~~~~ 127 (127)
T cd04027 80 QKFTRESDDFLGQTIIEVRTLSGE-----MDVWYNLE-KRTDK--SAVSGAIRLHI 127 (127)
T ss_pred eeccccCCCcceEEEEEhHHccCC-----CCeEEECc-cCCCC--CcEeEEEEEEC
Confidence 01124789999999999987532 56899999 55433 56799999874
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev |
| >cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5 | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.1e-15 Score=146.72 Aligned_cols=98 Identities=24% Similarity=0.426 Sum_probs=85.4
Q ss_pred CcEEEEEEEEeecCC-------CCCcEEEEEECC-----eEEeecCccCCCCCeEeeEEEEEEe--cCCCceEEEEEEec
Q 001987 3 STRLYVYVLQGQDLL-------AKDSYVKVQIGK-----HKSKSRILKNNSNPVWNEEFVFRVH--NIDDEELVVSVFQH 68 (985)
Q Consensus 3 ~~~L~V~V~~Ar~L~-------~~DPyv~v~l~~-----~~~kT~v~~~t~nP~wnE~f~f~v~--~~~~~~L~~~V~D~ 68 (985)
.+.|.|+|++|+||+ .+||||+|++.+ .++||+++++++||.|||+|.|.++ ......|.|.|||+
T Consensus 14 ~~~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~l~~~~L~~~V~d~ 93 (125)
T cd04029 14 TQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKRKTSIKRNTTNPVYNETLKYSISHSQLETRTLQLSVWHY 93 (125)
T ss_pred CCeEEEEEEEecCCCccCCCCCCCCcEEEEEEEcCCccccceEeeeeeCCCCCcccceEEEECCHHHhCCCEEEEEEEEC
Confidence 578999999999997 589999999963 3589999999999999999999986 34567899999999
Q ss_pred CCCCCCCCCCCCeeEEEEEeCccccccCCCCCCCeEEEee
Q 001987 69 NDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLE 108 (985)
Q Consensus 69 d~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~ 108 (985)
+ . .+++++||++.++|.++.... ....||+|.
T Consensus 94 ~---~--~~~~~~lG~~~i~l~~~~~~~---~~~~w~~l~ 125 (125)
T cd04029 94 D---R--FGRNTFLGEVEIPLDSWNFDS---QHEECLPLH 125 (125)
T ss_pred C---C--CCCCcEEEEEEEeCCcccccC---CcccEEECc
Confidence 9 4 579999999999999998763 478999984
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2 |
| >cd04046 C2_Calpain C2 domain present in Calpain proteins | Back alignment and domain information |
|---|
Probab=99.64 E-value=4.4e-15 Score=142.98 Aligned_cols=116 Identities=16% Similarity=0.232 Sum_probs=97.6
Q ss_pred CcEEEEEEEEeecCC------CCCcEEEEEECCeEEeecCccCCCCCeEeeEEEEEEecCCCceEEEEEEecCCCCCCCC
Q 001987 3 STRLYVYVLQGQDLL------AKDSYVKVQIGKHKSKSRILKNNSNPVWNEEFVFRVHNIDDEELVVSVFQHNDDSGLFG 76 (985)
Q Consensus 3 ~~~L~V~V~~Ar~L~------~~DPyv~v~l~~~~~kT~v~~~t~nP~wnE~f~f~v~~~~~~~L~~~V~D~d~~~~~~~ 76 (985)
...|+|+|++|++|. .+||||++.++++..+|+++++++||.|||+|.|.+. .....|.|+|||++ + .
T Consensus 2 ~~~~~V~v~~A~~L~~~d~~g~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~-~~~~~l~i~V~d~~---~--~ 75 (126)
T cd04046 2 QVVTQVHVHSAEGLSKQDSGGGADPYVIIKCEGESVRSPVQKDTLSPEFDTQAIFYRK-KPRSPIKIQVWNSN---L--L 75 (126)
T ss_pred cEEEEEEEEeCcCCCCCCCCCCcCccEEEEECCEEEEeCccCCCCCCcccceEEEEec-CCCCEEEEEEEECC---C--C
Confidence 467999999999998 6999999999999999999999999999999999884 45789999999998 4 2
Q ss_pred CCCCeeEEEEEeCccccccCCCCCCCeEEEeecCCCCCCCCccccEEEEEEEEEe
Q 001987 77 SSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTNKDCGKILLTISLNG 131 (985)
Q Consensus 77 ~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~~G~I~lsl~~~~ 131 (985)
+|++||++.+++.++.. ....|++|. .+..+..++..|+|.|.+.+.+
T Consensus 76 -~d~~lG~~~~~l~~~~~-----~~~~~~~l~-~~~~~~~~~~~G~i~~~~~~~~ 123 (126)
T cd04046 76 -CDEFLGQATLSADPNDS-----QTLRTLPLR-KRGRDAAGEVPGTISVKVTSSD 123 (126)
T ss_pred -CCCceEEEEEecccCCC-----cCceEEEcc-cCCCCCCCCCCCEEEEEEEEcc
Confidence 58999999999987542 356889997 3333345788999999987754
|
A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic |
| >cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2 | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.1e-15 Score=146.95 Aligned_cols=98 Identities=32% Similarity=0.491 Sum_probs=85.0
Q ss_pred CcEEEEEEEEeecCC-------CCCcEEEEEECC-----eEEeecCccCCCCCeEeeEEEEEEe--cCCCceEEEEEEec
Q 001987 3 STRLYVYVLQGQDLL-------AKDSYVKVQIGK-----HKSKSRILKNNSNPVWNEEFVFRVH--NIDDEELVVSVFQH 68 (985)
Q Consensus 3 ~~~L~V~V~~Ar~L~-------~~DPyv~v~l~~-----~~~kT~v~~~t~nP~wnE~f~f~v~--~~~~~~L~~~V~D~ 68 (985)
.+.|.|+|++|+||+ .+||||+|++.+ .++||+++++++||.|||+|.|.++ +.....|.|+|||+
T Consensus 14 ~~~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~~~~~~~~kT~v~~~t~nP~~nE~f~f~v~~~~l~~~~L~~~V~d~ 93 (125)
T cd08393 14 LRELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKKTLNPVFNETLRYKVEREELPTRVLNLSVWHR 93 (125)
T ss_pred CCEEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcCCCccccccCccCcCCCCCccCceEEEECCHHHhCCCEEEEEEEeC
Confidence 368999999999998 489999999963 3489999999999999999999986 45668999999999
Q ss_pred CCCCCCCCCCCCeeEEEEEeCccccccCCCCCCCeEEEee
Q 001987 69 NDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLE 108 (985)
Q Consensus 69 d~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~ 108 (985)
| + .+++++||++.+||.++... .....||+|+
T Consensus 94 ~---~--~~~~~~iG~~~i~L~~~~~~---~~~~~W~~L~ 125 (125)
T cd08393 94 D---S--LGRNSFLGEVEVDLGSWDWS---NTQPTWYPLQ 125 (125)
T ss_pred C---C--CCCCcEeEEEEEecCccccC---CCCcceEECc
Confidence 9 4 57899999999999999765 2467899984
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety |
| >KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.64 E-value=1e-16 Score=171.78 Aligned_cols=123 Identities=25% Similarity=0.382 Sum_probs=102.4
Q ss_pred hhhcccccCCCCCc-------cccCCCeEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CEEEEeeeccCCCCCeE
Q 001987 516 FVRARLRKGSDHGV-------KAQGDGWVLTVALVEGVNLASSEMTGLSDPYVVFTCN-----GKTRTSSVQLQTCDPQW 583 (985)
Q Consensus 516 ~~~~~~~~~~d~~~-------~~~~~~g~L~V~v~~a~~L~~~d~~g~~DPyv~v~~~-----~~~~kT~~~~~tlnP~W 583 (985)
..+.+.+++.|+.- .++.....|+|.|.+|+||.++|.||.|||||++.+- ..+.+|++++.+|||+|
T Consensus 153 v~nVPslCG~DhtE~RGrl~l~~~~~~~~l~v~i~ea~NLiPMDpNGlSDPYvk~kliPD~~~~sKqKTkTik~~LNP~w 232 (683)
T KOG0696|consen 153 VENVPSLCGTDHTERRGRLYLEAHIKRDVLTVTIKEAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIKATLNPVW 232 (683)
T ss_pred hhcCCcccCCcchhhcceEEEEEEecCceEEEEehhhccccccCCCCCCCcceeEEeccCCcchhhhhhhhhhhhcCccc
Confidence 34556677777632 2233456899999999999999999999999999993 45789999999999999
Q ss_pred eEEEEEEee-cCCCCEEEEEEEecCCCCCCCCccceEEEEeeccccCcccceEEEccc
Q 001987 584 HDILEFDAM-EEPPSVLDVEVFDFDGPFDQATSLGHAEINFLKHTSTELADMWVSLEG 640 (985)
Q Consensus 584 ne~f~f~v~-~~~~~~L~v~V~D~d~~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~~ 640 (985)
||+|+|.+. .+....|.|+|||||+. +++||+|.....++++... ..+.||.|..
T Consensus 233 NEtftf~Lkp~DkdrRlsiEvWDWDrT-sRNDFMGslSFgisEl~K~-p~~GWyKlLs 288 (683)
T KOG0696|consen 233 NETFTFKLKPSDKDRRLSIEVWDWDRT-SRNDFMGSLSFGISELQKA-PVDGWYKLLS 288 (683)
T ss_pred cceeEEecccccccceeEEEEeccccc-ccccccceecccHHHHhhc-chhhHHHHhh
Confidence 999999964 34567999999999995 9999999999999998765 4788999875
|
|
| >cd04032 C2_Perforin C2 domain of Perforin | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.3e-15 Score=145.45 Aligned_cols=93 Identities=22% Similarity=0.300 Sum_probs=83.1
Q ss_pred CCCeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCEEEEeeeccCCCCCeEeEEEEEEee-cCCCCEEEEEEEecCCCCC
Q 001987 533 GDGWVLTVALVEGVNLASSEMTGLSDPYVVFTCNGKTRTSSVQLQTCDPQWHDILEFDAM-EEPPSVLDVEVFDFDGPFD 611 (985)
Q Consensus 533 ~~~g~L~V~v~~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~~~~~tlnP~Wne~f~f~v~-~~~~~~L~v~V~D~d~~~~ 611 (985)
...|.|+|+|++|++|+. +..|.+||||+|++++++++|+++++++||+|||+|.|... ......|.|+|||+|. ++
T Consensus 25 ~~~~~L~V~V~~A~~L~~-d~~g~~DPYVkV~~~~~~~kT~vi~~t~nPvWNE~F~f~~~~~~~~~~L~v~V~D~d~-~s 102 (127)
T cd04032 25 RGLATLTVTVLRATGLWG-DYFTSTDGYVKVFFGGQEKRTEVIWNNNNPRWNATFDFGSVELSPGGKLRFEVWDRDN-GW 102 (127)
T ss_pred CCcEEEEEEEEECCCCCc-CcCCCCCeEEEEEECCccccCceecCCCCCcCCCEEEEecccCCCCCEEEEEEEeCCC-CC
Confidence 446899999999999984 67889999999999999999999999999999999999743 3457799999999998 79
Q ss_pred CCCccceEEEEeeccc
Q 001987 612 QATSLGHAEINFLKHT 627 (985)
Q Consensus 612 ~dd~lG~~~i~l~~l~ 627 (985)
+|++||++.++|....
T Consensus 103 ~dd~IG~~~i~l~~~~ 118 (127)
T cd04032 103 DDDLLGTCSVVPEAGV 118 (127)
T ss_pred CCCeeEEEEEEecCCc
Confidence 9999999999999654
|
Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few |
| >cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon | Back alignment and domain information |
|---|
Probab=99.63 E-value=4.7e-15 Score=144.17 Aligned_cols=113 Identities=25% Similarity=0.467 Sum_probs=97.5
Q ss_pred CCCcEEEEEEEEeecCC---C-------------CCcEEEEEECCeE-EeecCccCCCCCeEeeEEEEEEecCCCceEEE
Q 001987 1 MVSTRLYVYVLQGQDLL---A-------------KDSYVKVQIGKHK-SKSRILKNNSNPVWNEEFVFRVHNIDDEELVV 63 (985)
Q Consensus 1 ~~~~~L~V~V~~Ar~L~---~-------------~DPyv~v~l~~~~-~kT~v~~~t~nP~wnE~f~f~v~~~~~~~L~~ 63 (985)
|..+.|+|+|++|+||. . +||||++++++++ .+|+++++|+||.|||+|.|.+. ....|.|
T Consensus 1 ~~~g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~--~~~~l~~ 78 (132)
T cd04014 1 MFTGTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDDTHIGKTSTKPKTNSPVWNEEFTTEVH--NGRNLEL 78 (132)
T ss_pred CcceEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEECCEEEeEEeEcCCCCCCCcceeEEEEcC--CCCEEEE
Confidence 78899999999999997 2 6999999998765 79999999999999999999994 5688999
Q ss_pred EEEecCCCCCCCCCCCCeeEEEEEeCccccccCCCCCCCeEEEeecCCCCCCCCccccEEEEEEEEEe
Q 001987 64 SVFQHNDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTNKDCGKILLTISLNG 131 (985)
Q Consensus 64 ~V~D~d~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~~G~I~lsl~~~~ 131 (985)
.|||.+ . .+++++||++.++|.++... .......|++|. +.|+|+|.++|..
T Consensus 79 ~v~d~~---~--~~~~~~iG~~~i~l~~l~~~-~~~~~~~w~~L~----------~~G~l~l~~~~~~ 130 (132)
T cd04014 79 TVFHDA---A--IGPDDFVANCTISFEDLIQR-GSGSFDLWVDLE----------PQGKLHVKIELKG 130 (132)
T ss_pred EEEeCC---C--CCCCceEEEEEEEhHHhccc-CCCcccEEEEcc----------CCcEEEEEEEEec
Confidence 999988 3 57899999999999998864 123468999997 3599999999865
|
A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that |
| >cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.1e-15 Score=150.65 Aligned_cols=100 Identities=26% Similarity=0.494 Sum_probs=87.7
Q ss_pred CCCeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----------------------------EEEEeeeccCCCCCeE
Q 001987 533 GDGWVLTVALVEGVNLASSEMTGLSDPYVVFTCNG-----------------------------KTRTSSVQLQTCDPQW 583 (985)
Q Consensus 533 ~~~g~L~V~v~~a~~L~~~d~~g~~DPyv~v~~~~-----------------------------~~~kT~~~~~tlnP~W 583 (985)
...+.|+|+|++|+||++.|.+|.+||||++.++. +..+|+++++++||.|
T Consensus 25 ~~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W 104 (153)
T cd08676 25 PPIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQTLNPVW 104 (153)
T ss_pred CCeEEEEEEEEeccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecCCCCCcc
Confidence 34689999999999999999999999999999853 2378999999999999
Q ss_pred eEEEEEEeecCCCCEEEEEEEecCCCCCCCCccceEEEEeeccccCcccceEEEc
Q 001987 584 HDILEFDAMEEPPSVLDVEVFDFDGPFDQATSLGHAEINFLKHTSTELADMWVSL 638 (985)
Q Consensus 584 ne~f~f~v~~~~~~~L~v~V~D~d~~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L 638 (985)
||+|.|.+.......|.|+|||+| +++||++.+++.++.. ...+.||+|
T Consensus 105 nE~F~f~v~~~~~~~L~i~V~D~d-----d~~IG~v~i~l~~l~~-~~~d~W~~L 153 (153)
T cd08676 105 NETFRFEVEDVSNDQLHLDIWDHD-----DDFLGCVNIPLKDLPS-CGLDSWFKL 153 (153)
T ss_pred ccEEEEEeccCCCCEEEEEEEecC-----CCeEEEEEEEHHHhCC-CCCCCeEeC
Confidence 999999975555679999999976 7899999999999884 457999987
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy |
| >cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.7e-15 Score=142.17 Aligned_cols=98 Identities=31% Similarity=0.586 Sum_probs=86.3
Q ss_pred EEEEEEEeecCC-------CCCcEEEEEECCeEEeecCccCCCCCeE-eeEEEEEEec--CCCceEEEEEEecCCCCCCC
Q 001987 6 LYVYVLQGQDLL-------AKDSYVKVQIGKHKSKSRILKNNSNPVW-NEEFVFRVHN--IDDEELVVSVFQHNDDSGLF 75 (985)
Q Consensus 6 L~V~V~~Ar~L~-------~~DPyv~v~l~~~~~kT~v~~~t~nP~w-nE~f~f~v~~--~~~~~L~~~V~D~d~~~~~~ 75 (985)
|.|+|++|+||+ .+||||++++++.++||+++++++||.| ||+|.|.++. .....|.|+|||++ .
T Consensus 1 l~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~kT~v~~~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d---~-- 75 (110)
T cd08688 1 LKVRVVAARDLPVMDRSSDLTDAFVEVKFGSTTYKTDVVKKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHD---T-- 75 (110)
T ss_pred CEEEEEEEECCCccccCCCCCCceEEEEECCeeEecceecCCCCCcccCcEEEEEcChHHcCCCeEEEEEEeCC---C--
Confidence 689999999997 5799999999999999999999999999 9999999863 24579999999999 4
Q ss_pred CCCCCeeEEEEEeCccccccCCCCCCCeEEEee
Q 001987 76 GSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLE 108 (985)
Q Consensus 76 ~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~ 108 (985)
.+++++||++.++|.++...++......||+|.
T Consensus 76 ~~~~~~iG~~~~~l~~l~~~~~~~~~~~w~~l~ 108 (110)
T cd08688 76 YSANDAIGKVYIDLNPLLLKDSVSQISGWFPIY 108 (110)
T ss_pred CCCCCceEEEEEeHHHhcccCCccccCCeEEcc
Confidence 578999999999999998754445578999986
|
The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a |
| >cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.1e-15 Score=140.43 Aligned_cols=95 Identities=31% Similarity=0.606 Sum_probs=85.4
Q ss_pred EEEEEEEEeecCC------CCCcEEEEEECCeEEeecCccCCCCCeEeeEEEEEEecCCCceEEEEEEecCCCCCCCCCC
Q 001987 5 RLYVYVLQGQDLL------AKDSYVKVQIGKHKSKSRILKNNSNPVWNEEFVFRVHNIDDEELVVSVFQHNDDSGLFGSS 78 (985)
Q Consensus 5 ~L~V~V~~Ar~L~------~~DPyv~v~l~~~~~kT~v~~~t~nP~wnE~f~f~v~~~~~~~L~~~V~D~d~~~~~~~~~ 78 (985)
.|.|+|++|+||+ .+||||+|+++++.++|+++++|+||.|||+|.|.+..+....|.|+|||++ .
T Consensus 1 ~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~v~v~d~~--------~ 72 (105)
T cd04050 1 LLFVYLDSAKNLPLAKSTKEPSPYVELTVGKTTQKSKVKERTNNPVWEEGFTFLVRNPENQELEIEVKDDK--------T 72 (105)
T ss_pred CEEEEEeeecCCCCcccCCCCCcEEEEEECCEEEeCccccCCCCCcccceEEEEeCCCCCCEEEEEEEECC--------C
Confidence 3899999999998 7999999999999999999999999999999999997667789999999998 2
Q ss_pred CCeeEEEEEeCccccccCCCCCCCeEEEee
Q 001987 79 GELMGRVRVPVSSIAAEDNHMLPPTWFSLE 108 (985)
Q Consensus 79 d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~ 108 (985)
+++||++.++|.++...+ ......||+|.
T Consensus 73 ~~~iG~~~i~l~~l~~~~-~~~~~~w~~L~ 101 (105)
T cd04050 73 GKSLGSLTLPLSELLKEP-DLTLDQPFPLD 101 (105)
T ss_pred CCccEEEEEEHHHhhccc-cceeeeeEecC
Confidence 789999999999998653 23468999998
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm |
| >cd08680 C2_Kibra C2 domain found in Human protein Kibra | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.6e-15 Score=144.65 Aligned_cols=98 Identities=20% Similarity=0.416 Sum_probs=85.5
Q ss_pred CcEEEEEEEEeecCC------CCCcEEEEEECC------eEEeecCccCCCCCeEeeEEEEEEe--cCCCceEEEEEEec
Q 001987 3 STRLYVYVLQGQDLL------AKDSYVKVQIGK------HKSKSRILKNNSNPVWNEEFVFRVH--NIDDEELVVSVFQH 68 (985)
Q Consensus 3 ~~~L~V~V~~Ar~L~------~~DPyv~v~l~~------~~~kT~v~~~t~nP~wnE~f~f~v~--~~~~~~L~~~V~D~ 68 (985)
.+.|.|+|++||||+ .+||||++++.+ .++||+++++++||+|||+|.|+++ +.....|.|.|||+
T Consensus 13 ~~~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t~nPvfnE~F~f~v~~~~L~~~~L~~~V~~~ 92 (124)
T cd08680 13 DSSLVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRTKALEDQDKPVFNEVFRVPISSTKLYQKTLQVDVCSV 92 (124)
T ss_pred CCEEEEEEeEecCCcccccCCCCCeEEEEEEccCCCCCCceEEcCccCCCCCCccccEEEEECCHHHhhcCEEEEEEEeC
Confidence 578999999999998 589999999962 3689999999999999999999986 56789999999999
Q ss_pred CCCCCCCCCCCCeeEEEEEeCccccccCCCCCCCeEEEe
Q 001987 69 NDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSL 107 (985)
Q Consensus 69 d~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L 107 (985)
+ + .+++++||++.++|+++..... ....||+|
T Consensus 93 ~---~--~~~~~~lG~~~i~L~~~~~~~~--~~~~Wy~l 124 (124)
T cd08680 93 G---P--DQQEECLGGAQISLADFESSEE--MSTKWYNL 124 (124)
T ss_pred C---C--CCceeEEEEEEEEhhhccCCCc--cccccccC
Confidence 9 4 5789999999999999976532 35779976
|
Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom |
| >cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD) | Back alignment and domain information |
|---|
Probab=99.62 E-value=5.3e-15 Score=147.78 Aligned_cols=116 Identities=22% Similarity=0.426 Sum_probs=96.5
Q ss_pred CCcEEEEEEEEeecCCC------------------------------------CCcEEEEEECCeE-EeecCccCCCCCe
Q 001987 2 VSTRLYVYVLQGQDLLA------------------------------------KDSYVKVQIGKHK-SKSRILKNNSNPV 44 (985)
Q Consensus 2 ~~~~L~V~V~~Ar~L~~------------------------------------~DPyv~v~l~~~~-~kT~v~~~t~nP~ 44 (985)
.+|.|.|+|++|++|+. +||||+|++++.+ .||++++++.||.
T Consensus 5 lhG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~~~~~rT~v~~~~~nP~ 84 (158)
T cd04015 5 LHGTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAGARVARTRVIENSENPV 84 (158)
T ss_pred EeeeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECCeEeeEEEEeCCCCCCc
Confidence 57899999999999971 5999999999755 7999999999999
Q ss_pred EeeEEEEEEecCCCceEEEEEEecCCCCCCCCCCCCeeEEEEEeCccccccCCCCCCCeEEEeecCCCCCCCCccccEEE
Q 001987 45 WNEEFVFRVHNIDDEELVVSVFQHNDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTNKDCGKIL 124 (985)
Q Consensus 45 wnE~f~f~v~~~~~~~L~~~V~D~d~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~~G~I~ 124 (985)
|||+|.|.+. ...+.|.|.|||+| . . ++++||++.+||.++..+ .....|++|.+. .+++ .+..|+|+
T Consensus 85 WnE~F~~~~~-~~~~~l~~~V~d~d---~--~-~~~~IG~~~i~l~~l~~g---~~~~~w~~L~~~-~~~~-~~~~~~l~ 152 (158)
T cd04015 85 WNESFHIYCA-HYASHVEFTVKDND---V--V-GAQLIGRAYIPVEDLLSG---EPVEGWLPILDS-NGKP-PKPGAKIR 152 (158)
T ss_pred cceEEEEEcc-CCCCEEEEEEEeCC---C--c-CCcEEEEEEEEhHHccCC---CCcceEEECcCC-CCCC-CCCCCEEE
Confidence 9999999984 45578999999999 3 3 568999999999999864 346799999843 3332 45678999
Q ss_pred EEEEE
Q 001987 125 LTISL 129 (985)
Q Consensus 125 lsl~~ 129 (985)
|++.|
T Consensus 153 v~~~f 157 (158)
T cd04015 153 VSLQF 157 (158)
T ss_pred EEEEE
Confidence 99988
|
PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic |
| >cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4 | Back alignment and domain information |
|---|
Probab=99.62 E-value=5.4e-15 Score=141.31 Aligned_cols=112 Identities=21% Similarity=0.408 Sum_probs=92.8
Q ss_pred EEEEEEEeecCC------CCCcEEEEEECCeE-EeecCccCCCCCeEeeEEEEEEecCCCceEEEEEEecCCCCCCCCCC
Q 001987 6 LYVYVLQGQDLL------AKDSYVKVQIGKHK-SKSRILKNNSNPVWNEEFVFRVHNIDDEELVVSVFQHNDDSGLFGSS 78 (985)
Q Consensus 6 L~V~V~~Ar~L~------~~DPyv~v~l~~~~-~kT~v~~~t~nP~wnE~f~f~v~~~~~~~L~~~V~D~d~~~~~~~~~ 78 (985)
|.|+|++|++|+ .+||||+|.+++.. +||+++++++||.|||.|.|.+ ......|.|.|||++ . .++
T Consensus 2 l~v~vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~-~~~~~~l~v~v~d~~---~--~~~ 75 (121)
T cd04054 2 LYIRIVEGKNLPAKDITGSSDPYCIVKVDNEVIIRTATVWKTLNPFWGEEYTVHL-PPGFHTVSFYVLDED---T--LSR 75 (121)
T ss_pred EEEEEEEeeCCcCCCCCCCCCceEEEEECCEeeeeeeeEcCCCCCcccceEEEee-CCCCCEEEEEEEECC---C--CCC
Confidence 899999999998 78999999998754 7999999999999999999998 344579999999999 4 578
Q ss_pred CCeeEEEEEeCccccccCCCCCCCeEEEeecCCCCCCCCccccEEEEEEE
Q 001987 79 GELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTNKDCGKILLTIS 128 (985)
Q Consensus 79 d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~~G~I~lsl~ 128 (985)
+++||++.+++..+.... .....|++|. +.... ....|+|++.++
T Consensus 76 d~~iG~~~~~~~~~~~~~--~~~~~W~~L~-~~~~~--~~~~G~i~l~~~ 120 (121)
T cd04054 76 DDVIGKVSLTREVISAHP--RGIDGWMNLT-EVDPD--EEVQGEIHLELS 120 (121)
T ss_pred CCEEEEEEEcHHHhccCC--CCCCcEEECe-eeCCC--CccccEEEEEEE
Confidence 999999999988876432 2357899998 33221 456899998875
|
Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. |
| >cd04011 C2B_Ferlin C2 domain second repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.5e-15 Score=141.35 Aligned_cols=101 Identities=26% Similarity=0.492 Sum_probs=89.3
Q ss_pred cEEEEEEEEeecCC--CCCcEEEEEECCeEEeecCccCCCCCeEeeEEEEEEec----CCCceEEEEEEecCCCCCCCCC
Q 001987 4 TRLYVYVLQGQDLL--AKDSYVKVQIGKHKSKSRILKNNSNPVWNEEFVFRVHN----IDDEELVVSVFQHNDDSGLFGS 77 (985)
Q Consensus 4 ~~L~V~V~~Ar~L~--~~DPyv~v~l~~~~~kT~v~~~t~nP~wnE~f~f~v~~----~~~~~L~~~V~D~d~~~~~~~~ 77 (985)
-.|+|+|++|+||+ .+||||++++++++++|+++++++||.|||+|.|.+.. .....|.|+|||++ + .+
T Consensus 4 ~~l~V~v~~a~~L~~~~~dpyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~---~--~~ 78 (111)
T cd04011 4 FQVRVRVIEARQLVGGNIDPVVKVEVGGQKKYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVYDSR---S--LR 78 (111)
T ss_pred EEEEEEEEEcccCCCCCCCCEEEEEECCEeeeeeEEeccCCCccccEEEEecCCCHHHHhcCeEEEEEEcCc---c--cc
Confidence 36899999999998 89999999999999999999999999999999999742 23578999999999 4 56
Q ss_pred CCCeeEEEEEeCccccccCCCCCCCeEEEeec
Q 001987 78 SGELMGRVRVPVSSIAAEDNHMLPPTWFSLET 109 (985)
Q Consensus 78 ~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~~ 109 (985)
++++||++.++|+++....++.....|++|.+
T Consensus 79 ~~~~iG~~~i~l~~v~~~~~~~~~~~w~~L~~ 110 (111)
T cd04011 79 SDTLIGSFKLDVGTVYDQPDHAFLRKWLLLTD 110 (111)
T ss_pred cCCccEEEEECCccccCCCCCcceEEEEEeeC
Confidence 89999999999999987766667789999973
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme |
| >cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins | Back alignment and domain information |
|---|
Probab=99.61 E-value=5.2e-15 Score=141.85 Aligned_cols=113 Identities=19% Similarity=0.328 Sum_probs=92.6
Q ss_pred EEEEEEEEeecCC------CCCcEEEEEEC-CeEEeecCccCCCCCeEeeEEEEEEecCCCceEEEEEEecCCCCCCCCC
Q 001987 5 RLYVYVLQGQDLL------AKDSYVKVQIG-KHKSKSRILKNNSNPVWNEEFVFRVHNIDDEELVVSVFQHNDDSGLFGS 77 (985)
Q Consensus 5 ~L~V~V~~Ar~L~------~~DPyv~v~l~-~~~~kT~v~~~t~nP~wnE~f~f~v~~~~~~~L~~~V~D~d~~~~~~~~ 77 (985)
.|+|+|++|+||+ .+||||+++++ .+.++|+++++++||.|||+|.|.+.. ...|.|+|||++ . .+
T Consensus 1 ~l~v~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~--~~~l~i~V~d~~---~--~~ 73 (123)
T cd08382 1 KVRLTVLCADGLAKRDLFRLPDPFAVITVDGGQTHSTDVAKKTLDPKWNEHFDLTVGP--SSIITIQVFDQK---K--FK 73 (123)
T ss_pred CeEEEEEEecCCCccCCCCCCCcEEEEEECCccceEccEEcCCCCCcccceEEEEeCC--CCEEEEEEEECC---C--CC
Confidence 4899999999998 68999999996 567999999999999999999999943 789999999999 4 33
Q ss_pred C--CCeeEEEEEeCccccccCCCCCCCeEEEeecCCCCCCCCccccEEEEEE
Q 001987 78 S--GELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTNKDCGKILLTI 127 (985)
Q Consensus 78 ~--d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~~G~I~lsl 127 (985)
+ ++|||++.+++.++..... ....|++|.+.+.. ......|+|.+.+
T Consensus 74 ~~~d~~lG~~~i~l~~l~~~~~--~~~~~~~l~~~~~~-~~~~~~G~v~~~~ 122 (123)
T cd08382 74 KKDQGFLGCVRIRANAVLPLKD--TGYQRLDLRKLKKS-DNLSVRGKIVVSL 122 (123)
T ss_pred CCCCceEeEEEEEHHHccccCC--CccceeEeecCCCC-CCceEeeEEEEEe
Confidence 3 5899999999999975532 24679999744322 2355689999876
|
A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are |
| >cd08373 C2A_Ferlin C2 domain first repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.61 E-value=7.9e-15 Score=141.56 Aligned_cols=113 Identities=27% Similarity=0.329 Sum_probs=96.4
Q ss_pred EEEeecCC----CCCcEEEEEECCeEEeecCccCCCCCeEeeEEEEEEec--CCCceEEEEEEecCCCCCCCCCCCCeeE
Q 001987 10 VLQGQDLL----AKDSYVKVQIGKHKSKSRILKNNSNPVWNEEFVFRVHN--IDDEELVVSVFQHNDDSGLFGSSGELMG 83 (985)
Q Consensus 10 V~~Ar~L~----~~DPyv~v~l~~~~~kT~v~~~t~nP~wnE~f~f~v~~--~~~~~L~~~V~D~d~~~~~~~~~d~~lG 83 (985)
|++|+||+ .+||||+|++++.+++|++++++.||.|||+|.|.+.. .....|.|+|||++ + .+++++||
T Consensus 2 vi~a~~L~~~~g~~Dpyv~v~~~~~~~kT~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~---~--~~~d~~iG 76 (127)
T cd08373 2 VVSLKNLPGLKGKGDRIAKVTFRGVKKKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYE---K--VGRNRLIG 76 (127)
T ss_pred eEEeeCCcccCCCCCCEEEEEECCEeeecceeCCCcCCcccceEEEEeCCCcCCCCEEEEEEEECC---C--CCCCceEE
Confidence 78999999 79999999999999999999999999999999999853 36789999999999 4 57899999
Q ss_pred EEEEeCccccccCCCCCCCeEEEeecCCCCCCCCccccEEEEEEEEEecCC
Q 001987 84 RVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTNKDCGKILLTISLNGKGH 134 (985)
Q Consensus 84 ~~~i~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~~G~I~lsl~~~~~~~ 134 (985)
++.++|.++..+ .....|++|.++.. ...+|+|+++++|.+..+
T Consensus 77 ~~~~~l~~l~~~---~~~~~~~~L~~~~~----~~~~~~l~l~~~~~~~~~ 120 (127)
T cd08373 77 SATVSLQDLVSE---GLLEVTEPLLDSNG----RPTGATISLEVSYQPPDG 120 (127)
T ss_pred EEEEEhhHcccC---CceEEEEeCcCCCC----CcccEEEEEEEEEeCCCC
Confidence 999999999865 23678999983332 234799999999988653
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.61 E-value=3.1e-15 Score=143.52 Aligned_cols=91 Identities=23% Similarity=0.374 Sum_probs=82.0
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCEE--EEeeeccCCCCCeEeEEEEEEeecCCCCEEEEEEEecCCCCCCCC
Q 001987 537 VLTVALVEGVNLASSEMTGLSDPYVVFTCNGKT--RTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGPFDQAT 614 (985)
Q Consensus 537 ~L~V~v~~a~~L~~~d~~g~~DPyv~v~~~~~~--~kT~~~~~tlnP~Wne~f~f~v~~~~~~~L~v~V~D~d~~~~~dd 614 (985)
+|+|.|++|++|++.|..|.+||||+++++++. .+|+++++++||.|||+|.|.+..+....|.|+|||+|. +++|+
T Consensus 1 ~lrV~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~~kT~~v~~t~nP~Wne~f~f~~~~~~~~~L~~~V~d~d~-~~~dd 79 (124)
T cd04037 1 LVRVYVVRARNLQPKDPNGKSDPYLKIKLGKKKINDRDNYIPNTLNPVFGKMFELEATLPGNSILKISVMDYDL-LGSDD 79 (124)
T ss_pred CEEEEEEECcCCCCCCCCCCCCcEEEEEECCeeccceeeEEECCCCCccceEEEEEecCCCCCEEEEEEEECCC-CCCCc
Confidence 479999999999999999999999999999865 478889999999999999999655667799999999998 78999
Q ss_pred ccceEEEEeecccc
Q 001987 615 SLGHAEINFLKHTS 628 (985)
Q Consensus 615 ~lG~~~i~l~~l~~ 628 (985)
+||++.++|.+...
T Consensus 80 ~iG~~~i~l~~~~~ 93 (124)
T cd04037 80 LIGETVIDLEDRFF 93 (124)
T ss_pred eeEEEEEeeccccc
Confidence 99999999998654
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family | Back alignment and domain information |
|---|
Probab=99.61 E-value=7.8e-15 Score=142.84 Aligned_cols=115 Identities=15% Similarity=0.290 Sum_probs=96.6
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCEEE-EeeeccCCCCCeEeEEEEEEeecCCCCEEEEEEEecCCCCC---C
Q 001987 537 VLTVALVEGVNLASSEMTGLSDPYVVFTCNGKTR-TSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGPFD---Q 612 (985)
Q Consensus 537 ~L~V~v~~a~~L~~~d~~g~~DPyv~v~~~~~~~-kT~~~~~tlnP~Wne~f~f~v~~~~~~~L~v~V~D~d~~~~---~ 612 (985)
.|.|.|+||++|++++ ||||.|.++++.+ +|+++.++.||.|+|.|.|. ..++...|.|.||+.|...+ +
T Consensus 12 sL~v~V~EAk~Lp~~~-----~~Y~~i~Ld~~~vaRT~v~~~~~nP~W~E~F~f~-~~~~~~~l~v~v~k~~~~~~~~~~ 85 (146)
T cd04013 12 SLKLWIIEAKGLPPKK-----RYYCELCLDKTLYARTTSKLKTDTLFWGEHFEFS-NLPPVSVITVNLYRESDKKKKKDK 85 (146)
T ss_pred EEEEEEEEccCCCCcC-----CceEEEEECCEEEEEEEEEcCCCCCcceeeEEec-CCCcccEEEEEEEEccCccccccC
Confidence 6899999999999876 8999999999875 99999999999999999998 34445789999987653222 5
Q ss_pred CCccceEEEEeeccccCcccceEEEccccccC---------CcceeEEEEEeee
Q 001987 613 ATSLGHAEINFLKHTSTELADMWVSLEGKLAQ---------SAQSKVHLRIFLE 657 (985)
Q Consensus 613 dd~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~---------~~~g~l~l~~~ls 657 (985)
+++||++.||+.++..+...+.||+|.+..+. ...++|++++.|.
T Consensus 86 ~~~IG~V~Ip~~~l~~~~~ve~Wfpl~~~~~~~~~~~~~~~~~~~~lrik~rf~ 139 (146)
T cd04013 86 SQLIGTVNIPVTDVSSRQFVEKWYPVSTPKGNGKSGGKEGKGESPSIRIKARYQ 139 (146)
T ss_pred CcEEEEEEEEHHHhcCCCcccEEEEeecCCCCCccccccccCCCCEEEEEEEEE
Confidence 78999999999999988889999999875433 3457888888664
|
SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas |
| >cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group | Back alignment and domain information |
|---|
Probab=99.61 E-value=1e-14 Score=140.58 Aligned_cols=112 Identities=22% Similarity=0.427 Sum_probs=94.3
Q ss_pred EEEEEEEEeecCC------CCCcEEEEEECCe---EEeecCccCCCCCeEeeEEEEEEecCCCceEEEEEEecCCCCCCC
Q 001987 5 RLYVYVLQGQDLL------AKDSYVKVQIGKH---KSKSRILKNNSNPVWNEEFVFRVHNIDDEELVVSVFQHNDDSGLF 75 (985)
Q Consensus 5 ~L~V~V~~Ar~L~------~~DPyv~v~l~~~---~~kT~v~~~t~nP~wnE~f~f~v~~~~~~~L~~~V~D~d~~~~~~ 75 (985)
.|.|+|++|++|+ .+||||++.+.+. .++|+++++++||.|||+|.|.+.......|.|+|||++ .
T Consensus 2 ~~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~~~~~t~~P~Wne~f~f~i~~~~~~~L~i~v~d~d---~-- 76 (126)
T cd04043 2 LFTIRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEVPAGEPLWISATVWDRS---F-- 76 (126)
T ss_pred EEEEEEEEeECCCCCCCCCCCCceEEEEECCCCeeeecccEecCCCCCcccceEEEEcCCCCCCEEEEEEEECC---C--
Confidence 6899999999998 6899999998743 589999999999999999999986555789999999999 4
Q ss_pred CCCCCeeEEEEEeCccccccCCCCCCCeEEEeecCCCCCCCCccccEEEEEEEEEe
Q 001987 76 GSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTNKDCGKILLTISLNG 131 (985)
Q Consensus 76 ~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~~G~I~lsl~~~~ 131 (985)
.+++++||++.++|..+....+......|++|. ..|+|++.+.+..
T Consensus 77 ~~~~~~iG~~~i~l~~~~~~~~~~~~~~w~~l~----------~~g~i~l~~~~~~ 122 (126)
T cd04043 77 VGKHDLCGRASLKLDPKRFGDDGLPREIWLDLD----------TQGRLLLRVSMEG 122 (126)
T ss_pred CCCCceEEEEEEecCHHHcCCCCCCceEEEEcC----------CCCeEEEEEEEee
Confidence 568999999999999876543234567899997 2589999988854
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap |
| >cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Probab=99.60 E-value=6.1e-15 Score=141.67 Aligned_cols=114 Identities=24% Similarity=0.338 Sum_probs=95.2
Q ss_pred cEEEEEEEEeecCC-------CCCcEEEEEECC--eEEeecCccCCCCCeEeeEEEEEEecCCCceEEEEEEecCCCCCC
Q 001987 4 TRLYVYVLQGQDLL-------AKDSYVKVQIGK--HKSKSRILKNNSNPVWNEEFVFRVHNIDDEELVVSVFQHNDDSGL 74 (985)
Q Consensus 4 ~~L~V~V~~Ar~L~-------~~DPyv~v~l~~--~~~kT~v~~~t~nP~wnE~f~f~v~~~~~~~L~~~V~D~d~~~~~ 74 (985)
+.|.|+|++|+||+ .+||||++.+++ ..++|+++++++||.|||.|.|.+. ...+.|.|+|||.+ .
T Consensus 2 g~l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~~~~~kT~~~~~~~~P~Wne~~~~~v~-~~~~~l~~~v~d~~---~- 76 (124)
T cd04044 2 GVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNRRELARTKVKKDTSNPVWNETKYILVN-SLTEPLNLTVYDFN---D- 76 (124)
T ss_pred eEEEEEEEcccCCCcccccCCCCCCeEEEEECCCCcceEeeeecCCCCCcceEEEEEEeC-CCCCEEEEEEEecC---C-
Confidence 67999999999998 379999999987 6799999999999999999999984 66889999999999 4
Q ss_pred CCCCCCeeEEEEEeCccccccCCCCCCCeEEEeecCCCCCCCCccccEEEEEEEEEe
Q 001987 75 FGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTNKDCGKILLTISLNG 131 (985)
Q Consensus 75 ~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~~G~I~lsl~~~~ 131 (985)
.+++++||++.++|.++..... ....|+.+. . . .+.+|+|+++++|.|
T Consensus 77 -~~~d~~iG~~~~~l~~l~~~~~--~~~~~~~~~-~-~----~k~~G~i~~~l~~~p 124 (124)
T cd04044 77 -KRKDKLIGTAEFDLSSLLQNPE--QENLTKNLL-R-N----GKPVGELNYDLRFFP 124 (124)
T ss_pred -CCCCceeEEEEEEHHHhccCcc--ccCcchhhh-c-C----CccceEEEEEEEeCC
Confidence 4689999999999999986633 122345554 2 1 456899999999964
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. |
| >cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.7e-15 Score=147.52 Aligned_cols=104 Identities=21% Similarity=0.349 Sum_probs=89.5
Q ss_pred CCeEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CEEEEeeeccCCCCCeEeEEEEEEeecC--CCCEEEEEEEec
Q 001987 534 DGWVLTVALVEGVNLASSEMTGLSDPYVVFTCN-----GKTRTSSVQLQTCDPQWHDILEFDAMEE--PPSVLDVEVFDF 606 (985)
Q Consensus 534 ~~g~L~V~v~~a~~L~~~d~~g~~DPyv~v~~~-----~~~~kT~~~~~tlnP~Wne~f~f~v~~~--~~~~L~v~V~D~ 606 (985)
..+.|.|+|++|+||++.|..|.+||||++++. ..+.+|+++++++||+|||+|.|.+... ....|.|+|||+
T Consensus 11 ~~~~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~l~~~~l~~~V~d~ 90 (133)
T cd08384 11 QRRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYDIKHSDLAKKTLEITVWDK 90 (133)
T ss_pred CCCEEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcCCCccCCceeeeEeccCCCCcccEEEEECCHHHhCCCEEEEEEEeC
Confidence 457999999999999999999999999999995 2467999999999999999999996432 346899999999
Q ss_pred CCCCCCCCccceEEEEeeccccCcccceEEEccc
Q 001987 607 DGPFDQATSLGHAEINFLKHTSTELADMWVSLEG 640 (985)
Q Consensus 607 d~~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~~ 640 (985)
|. ++++++||++.+++.. .+.....|+++..
T Consensus 91 d~-~~~~~~lG~~~i~l~~--~~~~~~~W~~~l~ 121 (133)
T cd08384 91 DI-GKSNDYIGGLQLGINA--KGERLRHWLDCLK 121 (133)
T ss_pred CC-CCCccEEEEEEEecCC--CCchHHHHHHHHh
Confidence 98 6889999999999986 3445678988764
|
Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai |
| >cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family | Back alignment and domain information |
|---|
Probab=99.59 E-value=4e-15 Score=141.43 Aligned_cols=98 Identities=26% Similarity=0.472 Sum_probs=81.7
Q ss_pred CcEEEEEEEEeecCC-----CCCcEEEEEECC-----eEEeecCccCCCCCeEeeEEEEEEe-cCCCceEEEEEEecCCC
Q 001987 3 STRLYVYVLQGQDLL-----AKDSYVKVQIGK-----HKSKSRILKNNSNPVWNEEFVFRVH-NIDDEELVVSVFQHNDD 71 (985)
Q Consensus 3 ~~~L~V~V~~Ar~L~-----~~DPyv~v~l~~-----~~~kT~v~~~t~nP~wnE~f~f~v~-~~~~~~L~~~V~D~d~~ 71 (985)
++.|.|+|++|+||+ .+||||+|++++ .++||+++++++||.|||+|.|.+. ......|.|+|||.+
T Consensus 11 ~~~L~V~Vi~ar~L~~~~~g~~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~nE~F~f~v~~~~~~~~l~v~V~~~~-- 88 (119)
T cd08685 11 NRKLTLHVLEAKGLRSTNSGTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLFHETFSFDVNERDYQKRLLVTVWNKL-- 88 (119)
T ss_pred CCEEEEEEEEEECCCCCCCCCCCeeEEEEEEeCCCCcceEeCccccCCCCCccccEEEEEcChHHhCCEEEEEEECCC--
Confidence 578999999999998 589999999974 3579999999999999999999985 223457889999999
Q ss_pred CCCCCCCCCeeEEEEEeCccccccCCCCCCCeEEEe
Q 001987 72 SGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSL 107 (985)
Q Consensus 72 ~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L 107 (985)
++ ..++++||++.+||.++..+ .....||.|
T Consensus 89 -~~-~~~~~~lG~~~i~l~~~~~~---~~~~~Wy~l 119 (119)
T cd08685 89 -SK-SRDSGLLGCMSFGVKSIVNQ---KEISGWYYL 119 (119)
T ss_pred -CC-cCCCEEEEEEEecHHHhccC---ccccceEeC
Confidence 41 23578999999999999854 236789986
|
This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho |
| >cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD) | Back alignment and domain information |
|---|
Probab=99.59 E-value=7.2e-15 Score=137.07 Aligned_cols=87 Identities=17% Similarity=0.289 Sum_probs=78.2
Q ss_pred cEEEEEEEEeecCC----------CCCcEEEEEECCeEEeecCccCCCCCeEeeEEEEEEec-CCCceEEEEEEecCCCC
Q 001987 4 TRLYVYVLQGQDLL----------AKDSYVKVQIGKHKSKSRILKNNSNPVWNEEFVFRVHN-IDDEELVVSVFQHNDDS 72 (985)
Q Consensus 4 ~~L~V~V~~Ar~L~----------~~DPyv~v~l~~~~~kT~v~~~t~nP~wnE~f~f~v~~-~~~~~L~~~V~D~d~~~ 72 (985)
|.|.|+|++|+||+ .+||||+|+++++++||+++++++||+|||+|.|.+.. .....|.|+|||+|
T Consensus 1 g~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~~~~~kT~v~~~t~nPvWne~f~f~v~~~~~~~~L~~~V~D~d--- 77 (108)
T cd04039 1 GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISFGRRVFRTSWRRHTLNPVFNERLAFEVYPHEKNFDIQFKVLDKD--- 77 (108)
T ss_pred CEEEEEEEeeeCCCCccccCCCCCccCceEEEEECCEeEeeeeecCCCCCcccceEEEEEeCccCCCEEEEEEEECC---
Confidence 57999999999998 17999999999889999999999999999999999853 34468999999999
Q ss_pred CCCCCCCCeeEEEEEeCcccccc
Q 001987 73 GLFGSSGELMGRVRVPVSSIAAE 95 (985)
Q Consensus 73 ~~~~~~d~~lG~~~i~L~~l~~~ 95 (985)
+ .++|++||++.++|.++...
T Consensus 78 ~--~~~dd~IG~~~l~L~~l~~~ 98 (108)
T cd04039 78 K--FSFNDYVATGSLSVQELLNA 98 (108)
T ss_pred C--CCCCcceEEEEEEHHHHHhh
Confidence 4 57999999999999999876
|
PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM |
| >cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.1e-14 Score=140.07 Aligned_cols=114 Identities=18% Similarity=0.356 Sum_probs=93.7
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCE-EEEeeeccCCCCCeEeEEEEEEeecCCCCEEEEEEEecCCCCCCCCc
Q 001987 537 VLTVALVEGVNLASSEMTGLSDPYVVFTCNGK-TRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGPFDQATS 615 (985)
Q Consensus 537 ~L~V~v~~a~~L~~~d~~g~~DPyv~v~~~~~-~~kT~~~~~tlnP~Wne~f~f~v~~~~~~~L~v~V~D~d~~~~~dd~ 615 (985)
.|.|+|++|+ |...+..+.+||||+++++++ ..+|+++++++||+|||.|.|.+. ....|.|+|||+|. ++.|++
T Consensus 3 ~L~V~i~~a~-l~~~~~~~~~dPyv~v~~~~~~~~kT~v~~~t~~P~Wne~f~~~~~--~~~~l~~~V~d~~~-~~~~~~ 78 (125)
T cd04021 3 QLQITVESAK-LKSNSKSFKPDPYVEVTVDGQPPKKTEVSKKTSNPKWNEHFTVLVT--PQSTLEFKVWSHHT-LKADVL 78 (125)
T ss_pred eEEEEEEeeE-CCCCCcCCCCCeEEEEEECCcccEEeeeeCCCCCCccccEEEEEeC--CCCEEEEEEEeCCC-CCCCcE
Confidence 6899999999 555555889999999999987 899999999999999999999953 45799999999998 789999
Q ss_pred cceEEEEeeccccCcc-----cceEEEccccc--cCCcceeEEEEE
Q 001987 616 LGHAEINFLKHTSTEL-----ADMWVSLEGKL--AQSAQSKVHLRI 654 (985)
Q Consensus 616 lG~~~i~l~~l~~~~~-----~~~w~~L~~~~--~~~~~g~l~l~~ 654 (985)
||++.++|.++..... ...|++|.... .....|.|++.+
T Consensus 79 iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~ 124 (125)
T cd04021 79 LGEASLDLSDILKNHNGKLENVKLTLNLSSENKGSSVKVGELTVIL 124 (125)
T ss_pred EEEEEEEHHHhHhhcCCCccceEEEEEEEccCCCcceeeeeEEEEe
Confidence 9999999999765322 23589887433 234578887764
|
E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e |
| >cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family | Back alignment and domain information |
|---|
Probab=99.59 E-value=2e-14 Score=139.91 Aligned_cols=124 Identities=17% Similarity=0.377 Sum_probs=99.3
Q ss_pred CcEEEEEEEEeecCC-CCCcEEEEEECCeE-EeecCccCCCCCeEeeEEEEEEecCCCceEEEEEEecCCCCCCCCCCCC
Q 001987 3 STRLYVYVLQGQDLL-AKDSYVKVQIGKHK-SKSRILKNNSNPVWNEEFVFRVHNIDDEELVVSVFQHNDDSGLFGSSGE 80 (985)
Q Consensus 3 ~~~L~V~V~~Ar~L~-~~DPyv~v~l~~~~-~kT~v~~~t~nP~wnE~f~f~v~~~~~~~L~~~V~D~d~~~~~~~~~d~ 80 (985)
...|.|.|++|++|+ +.+|||.|.+++++ .||+++.++.||.|+|+|.|.. .+....|.|.||+.++..+ ...+++
T Consensus 10 ~~sL~v~V~EAk~Lp~~~~~Y~~i~Ld~~~vaRT~v~~~~~nP~W~E~F~f~~-~~~~~~l~v~v~k~~~~~~-~~~~~~ 87 (146)
T cd04013 10 ENSLKLWIIEAKGLPPKKRYYCELCLDKTLYARTTSKLKTDTLFWGEHFEFSN-LPPVSVITVNLYRESDKKK-KKDKSQ 87 (146)
T ss_pred EEEEEEEEEEccCCCCcCCceEEEEECCEEEEEEEEEcCCCCCcceeeEEecC-CCcccEEEEEEEEccCccc-cccCCc
Confidence 467999999999999 78999999999987 7999999999999999999985 3456789999987662211 012678
Q ss_pred eeEEEEEeCccccccCCCCCCCeEEEeecCCCCCC------CCccccEEEEEEEEEec
Q 001987 81 LMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKF------TNKDCGKILLTISLNGK 132 (985)
Q Consensus 81 ~lG~~~i~L~~l~~~~~~~~~~~W~~L~~~~~~~~------~~~~~G~I~lsl~~~~~ 132 (985)
+||++.||+.++..+ .....||+|.... +++ .....|.|+|.+.|.+.
T Consensus 88 ~IG~V~Ip~~~l~~~---~~ve~Wfpl~~~~-~~~~~~~~~~~~~~~~lrik~rf~~~ 141 (146)
T cd04013 88 LIGTVNIPVTDVSSR---QFVEKWYPVSTPK-GNGKSGGKEGKGESPSIRIKARYQST 141 (146)
T ss_pred EEEEEEEEHHHhcCC---CcccEEEEeecCC-CCCccccccccCCCCEEEEEEEEEEe
Confidence 999999999999854 4588999999443 322 13456899999999763
|
SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas |
| >cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4 | Back alignment and domain information |
|---|
Probab=99.59 E-value=2e-15 Score=147.48 Aligned_cols=103 Identities=20% Similarity=0.304 Sum_probs=89.1
Q ss_pred CeEEEEEEEEeecCCCCCCCCCCCcEEEEEEC--C---EEEEeeeccCCCCCeEeEEEEEEeec--CCCCEEEEEEEecC
Q 001987 535 GWVLTVALVEGVNLASSEMTGLSDPYVVFTCN--G---KTRTSSVQLQTCDPQWHDILEFDAME--EPPSVLDVEVFDFD 607 (985)
Q Consensus 535 ~g~L~V~v~~a~~L~~~d~~g~~DPyv~v~~~--~---~~~kT~~~~~tlnP~Wne~f~f~v~~--~~~~~L~v~V~D~d 607 (985)
.+.|.|+|++|+||+..|..|.+||||++++. + .+.+|+++++++||.|||+|.|.+.. .....|.|+|||+|
T Consensus 14 ~~~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~k~t~nP~w~e~F~f~v~~~~~~~~~l~~~v~d~d 93 (136)
T cd08404 14 TNRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFDIPSEELEDISVEFLVLDSD 93 (136)
T ss_pred CCeEEEEEEEeeCCCccccCCCCCeEEEEEEEcCCceeeeEcCccccCCCCCccCceEEEECCHHHhCCCEEEEEEEECC
Confidence 45899999999999999999999999999984 2 25789999999999999999999642 23558999999999
Q ss_pred CCCCCCCccceEEEEeeccccCcccceEEEccc
Q 001987 608 GPFDQATSLGHAEINFLKHTSTELADMWVSLEG 640 (985)
Q Consensus 608 ~~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~~ 640 (985)
. ++++++||++.+++.. .+.....|++|..
T Consensus 94 ~-~~~~~~iG~~~~~~~~--~~~~~~~w~~l~~ 123 (136)
T cd08404 94 R-VTKNEVIGRLVLGPKA--SGSGGHHWKEVCN 123 (136)
T ss_pred C-CCCCccEEEEEECCcC--CCchHHHHHHHHh
Confidence 8 8999999999999998 4556788999865
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s |
| >cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Probab=99.58 E-value=7.9e-15 Score=137.92 Aligned_cols=99 Identities=27% Similarity=0.444 Sum_probs=85.2
Q ss_pred CCCCCCcEEEEEECCE-EEEeeeccCCCCCeEeEEEEEEeecCCCCEEEEEEEecCCCCCCCCccceEEEEeecccc-Cc
Q 001987 553 MTGLSDPYVVFTCNGK-TRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGPFDQATSLGHAEINFLKHTS-TE 630 (985)
Q Consensus 553 ~~g~~DPyv~v~~~~~-~~kT~~~~~tlnP~Wne~f~f~v~~~~~~~L~v~V~D~d~~~~~dd~lG~~~i~l~~l~~-~~ 630 (985)
.+|.+||||+++++++ ..+|+++++++||+|||.|.|.+.+.....|.|.|||+|. + ++++||++.++|.++.. ..
T Consensus 9 ~~G~~dPYv~v~v~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~-~-~d~~iG~~~v~L~~l~~~~~ 86 (111)
T cd04052 9 KTGLLSPYAELYLNGKLVYTTRVKKKTNNPSWNASTEFLVTDRRKSRVTVVVKDDRD-R-HDPVLGSVSISLNDLIDATS 86 (111)
T ss_pred cCCCCCceEEEEECCEEEEEEeeeccCCCCccCCceEEEecCcCCCEEEEEEEECCC-C-CCCeEEEEEecHHHHHhhhh
Confidence 3789999999999875 5799999999999999999999755556789999999998 7 89999999999999754 45
Q ss_pred ccceEEEccccccCCcceeEEEEEeee
Q 001987 631 LADMWVSLEGKLAQSAQSKVHLRIFLE 657 (985)
Q Consensus 631 ~~~~w~~L~~~~~~~~~g~l~l~~~ls 657 (985)
....|++|.+ ..+|+|++++.+.
T Consensus 87 ~~~~w~~L~~----~~~G~i~~~~~~~ 109 (111)
T cd04052 87 VGQQWFPLSG----NGQGRIRISALWK 109 (111)
T ss_pred ccceeEECCC----CCCCEEEEEEEEe
Confidence 5689999986 3579999998764
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. |
| >cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11 | Back alignment and domain information |
|---|
Probab=99.58 E-value=1e-14 Score=140.62 Aligned_cols=100 Identities=27% Similarity=0.457 Sum_probs=84.5
Q ss_pred CcEEEEEEEEeecCC-------CCCcEEEEEEC---CeEEeecCccCCCCCeEeeEEEEE-Ee--cCCCceEEEEEEecC
Q 001987 3 STRLYVYVLQGQDLL-------AKDSYVKVQIG---KHKSKSRILKNNSNPVWNEEFVFR-VH--NIDDEELVVSVFQHN 69 (985)
Q Consensus 3 ~~~L~V~V~~Ar~L~-------~~DPyv~v~l~---~~~~kT~v~~~t~nP~wnE~f~f~-v~--~~~~~~L~~~V~D~d 69 (985)
.++|.|+|++|+||+ .+||||+|.+. .++.||+++++++||.|||+|.|. ++ +.....|.|.|||+|
T Consensus 15 ~~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~~~~~~kT~v~~~t~nP~wnE~F~f~~~~~~~~~~~~L~~~V~d~d 94 (128)
T cd08388 15 KKALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVKTRVLRKTRNPVYDETFTFYGIPYNQLQDLSLHFAVLSFD 94 (128)
T ss_pred CCEEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCCcCceeeccEEcCCCCCceeeEEEEcccCHHHhCCCEEEEEEEEcC
Confidence 468999999999998 46999999996 345799999999999999999994 54 345568999999999
Q ss_pred CCCCCCCCCCCeeEEEEEeCccccccCCCCCCCeEEEee
Q 001987 70 DDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLE 108 (985)
Q Consensus 70 ~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~ 108 (985)
+ .+++++||++.++|.++...++ .....|.+|+
T Consensus 95 ---~--~~~d~~lG~~~i~L~~l~~~~~-~~~~~~~~~~ 127 (128)
T cd08388 95 ---R--YSRDDVIGEVVCPLAGADLLNE-GELLVSREIQ 127 (128)
T ss_pred ---C--CCCCceeEEEEEeccccCCCCC-ceEEEEEecc
Confidence 5 5789999999999999987643 2367899886
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence |
| >cd04018 C2C_Ferlin C2 domain third repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.58 E-value=1e-14 Score=143.69 Aligned_cols=99 Identities=24% Similarity=0.423 Sum_probs=86.1
Q ss_pred EEEEEEEEeecCC-----C---------------CCcEEEEEECCeEEeecCccCCCCCeEeeEEEEEEe-cCCCceEEE
Q 001987 5 RLYVYVLQGQDLL-----A---------------KDSYVKVQIGKHKSKSRILKNNSNPVWNEEFVFRVH-NIDDEELVV 63 (985)
Q Consensus 5 ~L~V~V~~Ar~L~-----~---------------~DPyv~v~l~~~~~kT~v~~~t~nP~wnE~f~f~v~-~~~~~~L~~ 63 (985)
+|.|+|++|++|+ . +||||+|.+++++.+|+++++++||+|||+|.|.+. ....+.|.|
T Consensus 1 ~~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~g~~~kT~v~~~t~nPvWNE~f~f~v~~p~~~~~l~~ 80 (151)
T cd04018 1 RFIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFAGQKVKTSVKKNSYNPEWNEQIVFPEMFPPLCERIKI 80 (151)
T ss_pred CeEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEECCEeeecceEcCCCCCCcceEEEEEeeCCCcCCEEEE
Confidence 4899999999999 1 699999999999999999999999999999999974 345679999
Q ss_pred EEEecCCCCCCCCCCCCeeEEEEEeCccccccCCC----CCCCeEEEee
Q 001987 64 SVFQHNDDSGLFGSSGELMGRVRVPVSSIAAEDNH----MLPPTWFSLE 108 (985)
Q Consensus 64 ~V~D~d~~~~~~~~~d~~lG~~~i~L~~l~~~~~~----~~~~~W~~L~ 108 (985)
+|||+| . .++|++||++.++|.++...+.. ...+.|+.|.
T Consensus 81 ~v~D~d---~--~~~dd~iG~~~l~l~~l~~~~~~~~lp~~~p~W~~ly 124 (151)
T cd04018 81 QIRDWD---R--VGNDDVIGTHFIDLSKISNSGDEGFLPTFGPSFVNLY 124 (151)
T ss_pred EEEECC---C--CCCCCEEEEEEEeHHHhccCCccccCCccCceEEEee
Confidence 999999 4 57999999999999998776432 2568999998
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12 | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.5e-15 Score=145.84 Aligned_cols=103 Identities=20% Similarity=0.219 Sum_probs=86.3
Q ss_pred CeEEEEEEEEeecCCCCCCCCCCCcEEEEEEC---C--EEEEeeeccCCCCCeEeEEEEEEeec--CCCCEEEEEEEecC
Q 001987 535 GWVLTVALVEGVNLASSEMTGLSDPYVVFTCN---G--KTRTSSVQLQTCDPQWHDILEFDAME--EPPSVLDVEVFDFD 607 (985)
Q Consensus 535 ~g~L~V~v~~a~~L~~~d~~g~~DPyv~v~~~---~--~~~kT~~~~~tlnP~Wne~f~f~v~~--~~~~~L~v~V~D~d 607 (985)
.+.|.|+|++|+||+..|..|.+||||++++. . .+.||+++++++||+|||+|.|.+.. .....|.|+|||+|
T Consensus 14 ~~~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~~~~~k~kT~v~k~t~nP~~nE~f~F~v~~~~l~~~~l~~~V~~~d 93 (136)
T cd08406 14 AERLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVKRDDTNPIFNEAMIFSVPAIVLQDLSLRVTVAEST 93 (136)
T ss_pred CCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCccccccCCccccCCCCCeeceeEEEECCHHHhCCcEEEEEEEeCC
Confidence 34899999999999999999999999999993 2 25689999999999999999999643 34568999999999
Q ss_pred CCCCCCCccceEEEEeeccccCcccceEEEccc
Q 001987 608 GPFDQATSLGHAEINFLKHTSTELADMWVSLEG 640 (985)
Q Consensus 608 ~~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~~ 640 (985)
. ++++++||++.|.... .+...+.|..+..
T Consensus 94 ~-~~~~~~iG~v~lg~~~--~g~~~~hW~~ml~ 123 (136)
T cd08406 94 E-DGKTPNVGHVIIGPAA--SGMGLSHWNQMLA 123 (136)
T ss_pred C-CCCCCeeEEEEECCCC--CChhHHHHHHHHH
Confidence 8 7999999999997664 4555667766654
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl |
| >cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1) | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.2e-14 Score=139.16 Aligned_cols=114 Identities=21% Similarity=0.333 Sum_probs=92.5
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEEC-------------CEEEEeeeccCCCCCeE-eEEEEEEeecCCCCEEEEE
Q 001987 537 VLTVALVEGVNLASSEMTGLSDPYVVFTCN-------------GKTRTSSVQLQTCDPQW-HDILEFDAMEEPPSVLDVE 602 (985)
Q Consensus 537 ~L~V~v~~a~~L~~~d~~g~~DPyv~v~~~-------------~~~~kT~~~~~tlnP~W-ne~f~f~v~~~~~~~L~v~ 602 (985)
+..|.+++|+||+ ++..|++||||++.+. +++++|+++++++||+| ||+|.|.+. ....|.|+
T Consensus 2 ~~~~~~~~A~~L~-~~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~v~--~~~~L~v~ 78 (137)
T cd08691 2 SFSLSGLQARNLK-KGMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVWHREQFVFVGL--PTDVLEIE 78 (137)
T ss_pred EEEEEEEEeCCCC-CccCCCCCceEEEEEECCCcccccccccccceeeeeeEcCCCCCceEceEEEEEcC--CCCEEEEE
Confidence 4689999999998 7888999999999994 24789999999999999 999999963 45689999
Q ss_pred EEecCCCCCC---CCccceEEEEeeccccCc---ccceEEEccccc-cCCcceeEEEEE
Q 001987 603 VFDFDGPFDQ---ATSLGHAEINFLKHTSTE---LADMWVSLEGKL-AQSAQSKVHLRI 654 (985)
Q Consensus 603 V~D~d~~~~~---dd~lG~~~i~l~~l~~~~---~~~~w~~L~~~~-~~~~~g~l~l~~ 654 (985)
|||++. .++ +++||++.|++.++..+. ....|++|.... ....+|.|.|++
T Consensus 79 V~D~~~-~~~~~~~d~lG~~~i~l~~l~~~~~~~~~~~~~~l~k~~~~s~v~G~~~l~~ 136 (137)
T cd08691 79 VKDKFA-KSRPIIRRFLGKLSIPVQRLLERHAIGDQELSYTLGRRTPTDHVSGQLTFRF 136 (137)
T ss_pred EEecCC-CCCccCCceEEEEEEEHHHhcccccCCceEEEEECCcCCCCCcEEEEEEEEe
Confidence 999875 233 799999999999986542 356699998532 334568888775
|
NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C |
| >cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13 | Back alignment and domain information |
|---|
Probab=99.58 E-value=1e-14 Score=141.54 Aligned_cols=102 Identities=22% Similarity=0.330 Sum_probs=84.4
Q ss_pred CeEEEEEEEEeecCCCCCC--CCCCCcEEEEEECC-----EEEEeeeccCCCCCeEeEEEEEEeecC--CCCEEEEEEEe
Q 001987 535 GWVLTVALVEGVNLASSEM--TGLSDPYVVFTCNG-----KTRTSSVQLQTCDPQWHDILEFDAMEE--PPSVLDVEVFD 605 (985)
Q Consensus 535 ~g~L~V~v~~a~~L~~~d~--~g~~DPyv~v~~~~-----~~~kT~~~~~tlnP~Wne~f~f~v~~~--~~~~L~v~V~D 605 (985)
.+.|.|.|++|+||++.|. .+.+||||++++.. .+.||+++++++||+|||.|.|.+... ....|.|+|||
T Consensus 14 ~~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k~~kkkT~v~k~t~nPvfNE~f~F~v~~~~L~~~~L~~~V~d 93 (138)
T cd08407 14 ANRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKKKQTKRAKHKINPVWNEMIMFELPSELLAASSVELEVLN 93 (138)
T ss_pred CCeEEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCcccceeccceeeCCCCCccccEEEEECCHHHhCccEEEEEEEe
Confidence 4689999999999999983 35599999999853 256899999999999999999996432 25689999999
Q ss_pred cCCCCCCCCccceEEEEeeccccCcccceEEEcc
Q 001987 606 FDGPFDQATSLGHAEINFLKHTSTELADMWVSLE 639 (985)
Q Consensus 606 ~d~~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~ 639 (985)
+|. ++++|+||++.+++.. .+.....|..+.
T Consensus 94 ~d~-~~~~d~iG~v~lg~~~--~g~~~~hW~~ml 124 (138)
T cd08407 94 QDS-PGQSLPLGRCSLGLHT--SGTERQHWEEML 124 (138)
T ss_pred CCC-CcCcceeceEEecCcC--CCcHHHHHHHHH
Confidence 999 8999999999999975 444456676654
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy |
| >cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.1e-14 Score=141.51 Aligned_cols=103 Identities=26% Similarity=0.409 Sum_probs=91.9
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CEEEEeeeccCCCCCeEeEEEEEEeecC-CCCEEEEEEEecCCC
Q 001987 536 WVLTVALVEGVNLASSEMTGLSDPYVVFTCN-----GKTRTSSVQLQTCDPQWHDILEFDAMEE-PPSVLDVEVFDFDGP 609 (985)
Q Consensus 536 g~L~V~v~~a~~L~~~d~~g~~DPyv~v~~~-----~~~~kT~~~~~tlnP~Wne~f~f~v~~~-~~~~L~v~V~D~d~~ 609 (985)
+.|+|+|++|+||+..+..+.+||||++.+. ....+|++++++.||.|||+|.|.+... ....|.|+|||+|.
T Consensus 13 ~~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~wne~f~~~~~~~~~~~~l~v~v~d~~~- 91 (131)
T cd04026 13 NKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFDLKPADKDRRLSIEVWDWDR- 91 (131)
T ss_pred CEEEEEEEEeeCCCCcCCCCCCCCcEEEEEEcCCCCCceecceeecCCCCCCccceEEEeCCchhcCCEEEEEEEECCC-
Confidence 6899999999999999988999999999996 3678999999999999999999996432 35689999999998
Q ss_pred CCCCCccceEEEEeeccccCcccceEEEccc
Q 001987 610 FDQATSLGHAEINFLKHTSTELADMWVSLEG 640 (985)
Q Consensus 610 ~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~~ 640 (985)
++++++||++.++|.++... ....||+|..
T Consensus 92 ~~~~~~iG~~~~~l~~l~~~-~~~~w~~L~~ 121 (131)
T cd04026 92 TTRNDFMGSLSFGVSELIKM-PVDGWYKLLN 121 (131)
T ss_pred CCCcceeEEEEEeHHHhCcC-ccCceEECcC
Confidence 78999999999999998754 6788999986
|
A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd |
| >cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8 | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.5e-14 Score=139.08 Aligned_cols=98 Identities=27% Similarity=0.465 Sum_probs=85.5
Q ss_pred CcEEEEEEEEeecCC------CCCcEEEEEEC---CeEEeecCccCCCCCeEeeEEEEEEe--cCCCceEEEEEEecCCC
Q 001987 3 STRLYVYVLQGQDLL------AKDSYVKVQIG---KHKSKSRILKNNSNPVWNEEFVFRVH--NIDDEELVVSVFQHNDD 71 (985)
Q Consensus 3 ~~~L~V~V~~Ar~L~------~~DPyv~v~l~---~~~~kT~v~~~t~nP~wnE~f~f~v~--~~~~~~L~~~V~D~d~~ 71 (985)
.+.|.|+|++|+||+ .+||||+|+++ ...++|+++++++||.|||+|.|.++ ......|.|+|||++
T Consensus 15 ~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l~~~~l~i~V~d~~-- 92 (124)
T cd08387 15 MGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSKIHKKTLNPEFDESFVFEVPPQELPKRTLEVLLYDFD-- 92 (124)
T ss_pred CCEEEEEEEEeeCCCCCCCCCCCCCeEEEEEecCCCCcEeCceEcCCCCCCcccEEEEeCCHHHhCCCEEEEEEEECC--
Confidence 478999999999998 68999999995 34589999999999999999999986 335678999999999
Q ss_pred CCCCCCCCCeeEEEEEeCccccccCCCCCCCeEEEee
Q 001987 72 SGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLE 108 (985)
Q Consensus 72 ~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~ 108 (985)
. .+++++||++.++|.++..++ ....||+|+
T Consensus 93 -~--~~~~~~iG~~~i~l~~~~~~~---~~~~W~~l~ 123 (124)
T cd08387 93 -Q--FSRDECIGVVELPLAEVDLSE---KLDLWRKIQ 123 (124)
T ss_pred -C--CCCCceeEEEEEecccccCCC---CcceEEECc
Confidence 4 578999999999999998663 467899986
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv |
| >cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16 | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.4e-14 Score=138.92 Aligned_cols=97 Identities=27% Similarity=0.485 Sum_probs=84.5
Q ss_pred CcEEEEEEEEeecCC------CCCcEEEEEECC---eEEeecCccCCCCCeEeeEEEEE-Ee--cCCCceEEEEEEecCC
Q 001987 3 STRLYVYVLQGQDLL------AKDSYVKVQIGK---HKSKSRILKNNSNPVWNEEFVFR-VH--NIDDEELVVSVFQHND 70 (985)
Q Consensus 3 ~~~L~V~V~~Ar~L~------~~DPyv~v~l~~---~~~kT~v~~~t~nP~wnE~f~f~-v~--~~~~~~L~~~V~D~d~ 70 (985)
.++|.|+|++|+||+ .+||||++.+.+ ++.||+++++ +||+|||+|.|. +. ......|.|.|||++
T Consensus 15 ~~~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~~~~~~kTkv~~~-~nP~fnE~F~f~~i~~~~l~~~~L~~~V~~~~- 92 (124)
T cd08389 15 ARKLTVTVIRAQDIPTKDRGGASSWQVHLVLLPSKKQRAKTKVQRG-PNPVFNETFTFSRVEPEELNNMALRFRLYGVE- 92 (124)
T ss_pred CCEEEEEEEEecCCCchhcCCCCCcEEEEEEccCCcceeecccccC-CCCcccCEEEECCCCHHHhccCEEEEEEEECC-
Confidence 478999999999998 689999988853 5689999988 999999999998 65 456789999999999
Q ss_pred CCCCCCCCCCeeEEEEEeCccccccCCCCCCCeEEEee
Q 001987 71 DSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLE 108 (985)
Q Consensus 71 ~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~ 108 (985)
+ .+++++||++.++|.++..+ .....||+|+
T Consensus 93 --~--~~~~~~lG~~~i~L~~l~~~---~~~~~w~~L~ 123 (124)
T cd08389 93 --R--MRKERLIGEKVVPLSQLNLE---GETTVWLTLE 123 (124)
T ss_pred --C--cccCceEEEEEEeccccCCC---CCceEEEeCC
Confidence 5 57899999999999999765 3578999997
|
Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle |
| >cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins | Back alignment and domain information |
|---|
Probab=99.57 E-value=1e-14 Score=141.94 Aligned_cols=93 Identities=24% Similarity=0.267 Sum_probs=82.6
Q ss_pred CeEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-------CEEEEeeeccCCCCCeEeEEEEEEeecC----CCCEEEEEE
Q 001987 535 GWVLTVALVEGVNLASSEMTGLSDPYVVFTCN-------GKTRTSSVQLQTCDPQWHDILEFDAMEE----PPSVLDVEV 603 (985)
Q Consensus 535 ~g~L~V~v~~a~~L~~~d~~g~~DPyv~v~~~-------~~~~kT~~~~~tlnP~Wne~f~f~v~~~----~~~~L~v~V 603 (985)
.+.|+|+|++|++|+..+..|.+||||+|++. ...++|+++++|+||+|||+|.|.+... ....|.|+|
T Consensus 15 ~~~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~~~~~~~~l~~~V 94 (133)
T cd04009 15 EQSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFNVPPEQCSVEGALLLFTV 94 (133)
T ss_pred CCEEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCCcCccccccccccCcCCCCCccCCEEEEEechhhcccCCCEEEEEE
Confidence 35899999999999999989999999999995 3578999999999999999999996432 356899999
Q ss_pred EecCCCCCCCCccceEEEEeecccc
Q 001987 604 FDFDGPFDQATSLGHAEINFLKHTS 628 (985)
Q Consensus 604 ~D~d~~~~~dd~lG~~~i~l~~l~~ 628 (985)
||+|. +++|++||++.++|.++..
T Consensus 95 ~d~d~-~~~d~~iG~~~i~l~~l~~ 118 (133)
T cd04009 95 KDYDL-LGSNDFEGEAFLPLNDIPG 118 (133)
T ss_pred EecCC-CCCCcEeEEEEEeHHHCCc
Confidence 99998 7889999999999999764
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s |
| >cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.2e-14 Score=138.49 Aligned_cols=100 Identities=26% Similarity=0.467 Sum_probs=85.1
Q ss_pred CcEEEEEEEEeecCC------CCCcEEEEEEC-----CeEEeecCccCCCCCeEeeEEEEEEe--cCCCceEEEEEEecC
Q 001987 3 STRLYVYVLQGQDLL------AKDSYVKVQIG-----KHKSKSRILKNNSNPVWNEEFVFRVH--NIDDEELVVSVFQHN 69 (985)
Q Consensus 3 ~~~L~V~V~~Ar~L~------~~DPyv~v~l~-----~~~~kT~v~~~t~nP~wnE~f~f~v~--~~~~~~L~~~V~D~d 69 (985)
.+.|.|+|++|+||+ .+||||+|++. ..+++|+++++++||.|||+|.|.+. ......|.|.|||.+
T Consensus 15 ~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~~~nP~wne~f~f~i~~~~l~~~~l~i~v~~~~ 94 (127)
T cd04030 15 RQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFPVSLEELKRRTLDVAVKNSK 94 (127)
T ss_pred CCEEEEEEEEEECCCCccCCCCCCceEEEEEEcCCCCCceEecccccCCCCCEECeEEEEecCHHHhcCCEEEEEEEECC
Confidence 478999999999998 78999999996 35689999999999999999999985 345689999999998
Q ss_pred CCCCCCCCCCCeeEEEEEeCccccccCCCCCCCeEEEee
Q 001987 70 DDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLE 108 (985)
Q Consensus 70 ~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~ 108 (985)
.+..+++++||++.++|.++..++ ....||+|.
T Consensus 95 ---~~~~~~~~~iG~~~i~l~~l~~~~---~~~~W~~L~ 127 (127)
T cd04030 95 ---SFLSREKKLLGQVLIDLSDLDLSK---GFTQWYDLT 127 (127)
T ss_pred ---cccCCCCceEEEEEEecccccccC---CccceEECc
Confidence 421268999999999999997652 468899984
|
KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1 |
| >cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10 | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.1e-14 Score=138.01 Aligned_cols=98 Identities=35% Similarity=0.593 Sum_probs=84.8
Q ss_pred CcEEEEEEEEeecCC------CCCcEEEEEECC---eEEeecCccCCCCCeEeeEEEEEEe--cCCCceEEEEEEecCCC
Q 001987 3 STRLYVYVLQGQDLL------AKDSYVKVQIGK---HKSKSRILKNNSNPVWNEEFVFRVH--NIDDEELVVSVFQHNDD 71 (985)
Q Consensus 3 ~~~L~V~V~~Ar~L~------~~DPyv~v~l~~---~~~kT~v~~~t~nP~wnE~f~f~v~--~~~~~~L~~~V~D~d~~ 71 (985)
.+.|.|+|++|+||+ .+||||+|++.+ ..++|+++++++||.|||+|.|.++ ......|.|+|||++
T Consensus 15 ~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~V~d~d-- 92 (124)
T cd08385 15 SNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFTFKVPYSELGNKTLVFSVYDFD-- 92 (124)
T ss_pred CCEEEEEEEEeeCCCCccCCCCCCCEEEEEEEcCCCCceecccCcCCCCCceeeeEEEeCCHHHhCCCEEEEEEEeCC--
Confidence 578999999999998 689999999964 4579999999999999999999985 234678999999999
Q ss_pred CCCCCCCCCeeEEEEEeCccccccCCCCCCCeEEEee
Q 001987 72 SGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLE 108 (985)
Q Consensus 72 ~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~ 108 (985)
+ .+++++||++.++|.++..+ .....|++|+
T Consensus 93 -~--~~~~~~lG~~~i~l~~~~~~---~~~~~W~~l~ 123 (124)
T cd08385 93 -R--FSKHDLIGEVRVPLLTVDLG---HVTEEWRDLE 123 (124)
T ss_pred -C--CCCCceeEEEEEecCcccCC---CCcceEEEcc
Confidence 5 57899999999999998764 2467999986
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and |
| >cd04048 C2A_Copine C2 domain first repeat in Copine | Back alignment and domain information |
|---|
Probab=99.56 E-value=8.9e-15 Score=139.71 Aligned_cols=98 Identities=22% Similarity=0.286 Sum_probs=87.0
Q ss_pred EEEeecCCCCCCCCCCCcEEEEEECCE-------EEEeeeccCCCCCeEeEEEEEEeecCCCCEEEEEEEecCC---CCC
Q 001987 542 LVEGVNLASSEMTGLSDPYVVFTCNGK-------TRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDG---PFD 611 (985)
Q Consensus 542 v~~a~~L~~~d~~g~~DPyv~v~~~~~-------~~kT~~~~~tlnP~Wne~f~f~v~~~~~~~L~v~V~D~d~---~~~ 611 (985)
.++|++|+..|..|.+||||++++.+. .++|+++++++||+|||+|.|.+..+....|.|+|||+|. .++
T Consensus 6 ~i~a~~L~~~d~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~~~~~~l~~~V~d~d~~~~~~~ 85 (120)
T cd04048 6 SISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFEEVQKLRFEVYDVDSKSKDLS 85 (120)
T ss_pred EEEccCCCCCCCCCCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEEeEeeeEEEEEEEEecCCcCCCC
Confidence 489999999999999999999999754 4899999999999999999998655566789999999995 148
Q ss_pred CCCccceEEEEeeccccCcccceEEEcc
Q 001987 612 QATSLGHAEINFLKHTSTELADMWVSLE 639 (985)
Q Consensus 612 ~dd~lG~~~i~l~~l~~~~~~~~w~~L~ 639 (985)
+|++||++.+++.++..+.....|++|.
T Consensus 86 ~~d~iG~~~i~l~~l~~~~~~~~~~~l~ 113 (120)
T cd04048 86 DHDFLGEAECTLGEIVSSPGQKLTLPLK 113 (120)
T ss_pred CCcEEEEEEEEHHHHhcCCCcEEEEEcc
Confidence 9999999999999998887888899994
|
There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma |
| >cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.8e-14 Score=138.61 Aligned_cols=98 Identities=28% Similarity=0.574 Sum_probs=82.6
Q ss_pred CCcEEEEEEEEeecCC------CCCcEEEEEECC-----eEEeecCccCCCCCeEeeEEEEEEe---cCCCceEEEEEEe
Q 001987 2 VSTRLYVYVLQGQDLL------AKDSYVKVQIGK-----HKSKSRILKNNSNPVWNEEFVFRVH---NIDDEELVVSVFQ 67 (985)
Q Consensus 2 ~~~~L~V~V~~Ar~L~------~~DPyv~v~l~~-----~~~kT~v~~~t~nP~wnE~f~f~v~---~~~~~~L~~~V~D 67 (985)
..++|.|+|++|+||+ .+||||+|++.+ .+++|+++++++||.|||+|.|.+. +.....|.|+|||
T Consensus 14 ~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~l~~~V~d 93 (125)
T cd04031 14 VTSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYSNVRRETLKERTLEVTVWD 93 (125)
T ss_pred CCCEEEEEEEEecCCCCcCCCCCCCCEEEEEEccCCCccccccccccCCCCCCccccEEEEcccCHHHhCCCEEEEEEEe
Confidence 3578999999999998 689999999974 5689999999999999999999853 2356899999999
Q ss_pred cCCCCCCCCCCCCeeEEEEEeCccccccCCCCCCCeEEEee
Q 001987 68 HNDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLE 108 (985)
Q Consensus 68 ~d~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~ 108 (985)
++ + .+++++||++.++|.+.... ....||+|+
T Consensus 94 ~~---~--~~~~~~iG~~~i~l~~~~~~----~~~~W~~L~ 125 (125)
T cd04031 94 YD---R--DGENDFLGEVVIDLADALLD----DEPHWYPLQ 125 (125)
T ss_pred CC---C--CCCCcEeeEEEEeccccccc----CCcceEECc
Confidence 99 4 57899999999999994322 246899985
|
RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as |
| >cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs) | Back alignment and domain information |
|---|
Probab=99.56 E-value=4.9e-14 Score=133.94 Aligned_cols=112 Identities=22% Similarity=0.293 Sum_probs=87.9
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECCE-EEEeeeccCCCCCeEeEEEEEEeecC--CCCEEEEEEEecCCCCCCCC
Q 001987 538 LTVALVEGVNLASSEMTGLSDPYVVFTCNGK-TRTSSVQLQTCDPQWHDILEFDAMEE--PPSVLDVEVFDFDGPFDQAT 614 (985)
Q Consensus 538 L~V~v~~a~~L~~~d~~g~~DPyv~v~~~~~-~~kT~~~~~tlnP~Wne~f~f~v~~~--~~~~L~v~V~D~d~~~~~dd 614 (985)
|+|+|++|+||+.. |.+||||+++++++ .++|+++++ +||.|||+|.|.+... ....|.|.|||.+. .+++.
T Consensus 2 L~v~vi~a~~l~~~---~~~dpyv~v~~~~~~~~kT~~~~~-~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~~-~~~~~ 76 (117)
T cd08383 2 LRLRILEAKNLPSK---GTRDPYCTVSLDQVEVARTKTVEK-LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKRS-KDRDI 76 (117)
T ss_pred eEEEEEEecCCCcC---CCCCceEEEEECCEEeEecceEEC-CCCcccceEEEecCCccccEEEEEEEEEeccc-CCCee
Confidence 78999999999986 79999999999985 479999988 9999999999996432 23467888888776 55565
Q ss_pred ccceEEEEeeccccCcccceEEEccccc-cCCcceeEEEEEee
Q 001987 615 SLGHAEINFLKHTSTELADMWVSLEGKL-AQSAQSKVHLRIFL 656 (985)
Q Consensus 615 ~lG~~~i~l~~l~~~~~~~~w~~L~~~~-~~~~~g~l~l~~~l 656 (985)
++|+ ++|..+..+...+.|++|.+.. .....|+|+|.+.|
T Consensus 77 ~~g~--v~l~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~ 117 (117)
T cd08383 77 VIGK--VALSKLDLGQGKDEWFPLTPVDPDSEVQGSVRLRARY 117 (117)
T ss_pred EEEE--EEecCcCCCCcceeEEECccCCCCCCcCceEEEEEEC
Confidence 5665 5555555577789999998743 34568999999864
|
RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 |
| >cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7 | Back alignment and domain information |
|---|
Probab=99.55 E-value=6.8e-15 Score=143.82 Aligned_cols=104 Identities=20% Similarity=0.343 Sum_probs=88.4
Q ss_pred CeEEEEEEEEeecCCCCCCCCCCCcEEEEEEC--C---EEEEeeeccCCCCCeEeEEEEEEeecC--CCCEEEEEEEecC
Q 001987 535 GWVLTVALVEGVNLASSEMTGLSDPYVVFTCN--G---KTRTSSVQLQTCDPQWHDILEFDAMEE--PPSVLDVEVFDFD 607 (985)
Q Consensus 535 ~g~L~V~v~~a~~L~~~d~~g~~DPyv~v~~~--~---~~~kT~~~~~tlnP~Wne~f~f~v~~~--~~~~L~v~V~D~d 607 (985)
.+.|.|+|++|+||+..+..|.+||||++++. + .+.+|+++++++||+|||+|.|.+... ....|.|+|||+|
T Consensus 14 ~~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~~kT~v~~~t~~P~wne~F~f~i~~~~~~~~~l~~~v~d~~ 93 (136)
T cd08405 14 ANRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIFNIPLERLRETTLIITVMDKD 93 (136)
T ss_pred CCeEEEEEEEeeCCCccccCCCCCceEEEEEEeCCCccccccCcceeCCCCCcccceEEEeCCHHHhCCCEEEEEEEECC
Confidence 56899999999999999999999999999983 2 357899999999999999999996422 3468999999999
Q ss_pred CCCCCCCccceEEEEeeccccCcccceEEEcccc
Q 001987 608 GPFDQATSLGHAEINFLKHTSTELADMWVSLEGK 641 (985)
Q Consensus 608 ~~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~~~ 641 (985)
. ++++++||++.+++.+. +.....|+++...
T Consensus 94 ~-~~~~~~lG~~~i~~~~~--~~~~~~w~~~~~~ 124 (136)
T cd08405 94 R-LSRNDLIGKIYLGWKSG--GLELKHWKDMLSK 124 (136)
T ss_pred C-CCCCcEeEEEEECCccC--CchHHHHHHHHhC
Confidence 8 79999999999999875 4456778777653
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves |
| >KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.4e-14 Score=164.19 Aligned_cols=172 Identities=21% Similarity=0.283 Sum_probs=127.5
Q ss_pred CeEEEEEEEEeecCCCCCCCCCCCcEEEEEEC---CEEEEeeeccCCCCCeEeEEEEEEee--cCCCCEEEEEEEecCCC
Q 001987 535 GWVLTVALVEGVNLASSEMTGLSDPYVVFTCN---GKTRTSSVQLQTCDPQWHDILEFDAM--EEPPSVLDVEVFDFDGP 609 (985)
Q Consensus 535 ~g~L~V~v~~a~~L~~~d~~g~~DPyv~v~~~---~~~~kT~~~~~tlnP~Wne~f~f~v~--~~~~~~L~v~V~D~d~~ 609 (985)
...|+|+|++|++|+++|..|.+||||++++. ..+++|++.++|+||+|||+|.|.+. ......|.++|||+|+
T Consensus 166 ~~~L~V~V~qa~~Lp~~d~~g~sdpyVK~~llPdk~~k~kT~v~r~tlnP~fnEtf~f~v~~~~l~~~~L~l~V~~~dr- 244 (421)
T KOG1028|consen 166 LNLLTVRVIQAHDLPAKDRGGTSDPYVKVYLLPDKKGKFKTRVHRKTLNPVFNETFRFEVPYEELSNRVLHLSVYDFDR- 244 (421)
T ss_pred CCEEEEEEEEecCCCcccCCCCCCCeeEEEEcCCCCCcceeeeeecCcCCccccceEeecCHHHhccCEEEEEEEecCC-
Confidence 34799999999999999977889999999995 46899999999999999999999953 2456799999999999
Q ss_pred CCCCCccceEEEEeeccccCcccceEEEcccc--ccCCcceeEEEEEeeecCCCcchh---------------------h
Q 001987 610 FDQATSLGHAEINFLKHTSTELADMWVSLEGK--LAQSAQSKVHLRIFLENNNGVETI---------------------K 666 (985)
Q Consensus 610 ~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~~~--~~~~~~g~l~l~~~ls~~~~~~~l---------------------~ 666 (985)
|++|++||++.++|..+........|.+|... ......|+|.+.+.|....+.-.+ +
T Consensus 245 fsr~~~iGev~~~l~~~~~~~~~~~w~~l~~~~~~~~~~~gel~~sL~Y~p~~g~ltv~v~kar~L~~~~~~~~~d~~Vk 324 (421)
T KOG1028|consen 245 FSRHDFIGEVILPLGEVDLLSTTLFWKDLQPSSTDSEELAGELLLSLCYLPTAGRLTVVVIKARNLKSMDVGGLSDPYVK 324 (421)
T ss_pred cccccEEEEEEecCccccccccceeeeccccccCCcccccceEEEEEEeecCCCeEEEEEEEecCCCcccCCCCCCccEE
Confidence 99999999999999998888778899999873 222233688887766555332110 1
Q ss_pred hhhhhhhhhccccceeEeeeeEeeeeccccCcceEEEEecccccc
Q 001987 667 EYLTKMEKEVGKKGRLFLSARIVGFYANLFGNKTKFFFLWEDIED 711 (985)
Q Consensus 667 ~~l~~lek~i~~~gr~y~s~~~~~f~snif~~~~~~~i~~~di~~ 711 (985)
-++....+.+.++ .+..--|-.+.+|++.+.|-||-+++.+
T Consensus 325 ~~l~~~~~~~~kk----kT~~~~~~~npv~nesf~F~vp~~~l~~ 365 (421)
T KOG1028|consen 325 VTLLDGDKRLSKK----KTSVKKKTLNPVFNETFVFDVPPEQLAE 365 (421)
T ss_pred EEEecCCceeeee----eeecccCCCCCcccccEEEeCCHHHhhe
Confidence 1111111111111 1111224456799999999999777765
|
|
| >cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.9e-14 Score=138.58 Aligned_cols=111 Identities=24% Similarity=0.428 Sum_probs=92.4
Q ss_pred EEEEEEEEeecCC------CCCcEEEEEECC-eEEeecCcc-CCCCCeEeeEEEEEEecC----CCceEEEEEEecCCCC
Q 001987 5 RLYVYVLQGQDLL------AKDSYVKVQIGK-HKSKSRILK-NNSNPVWNEEFVFRVHNI----DDEELVVSVFQHNDDS 72 (985)
Q Consensus 5 ~L~V~V~~Ar~L~------~~DPyv~v~l~~-~~~kT~v~~-~t~nP~wnE~f~f~v~~~----~~~~L~~~V~D~d~~~ 72 (985)
.|+|+|++|++|+ .+||||+|++++ ++++|++++ ++.||.|||+|.|.+... ....|.|+|||++
T Consensus 1 ~L~V~V~sA~~L~~~~~~~~~dpYv~v~~~~~~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~--- 77 (125)
T cd04051 1 TLEITIISAEDLKNVNLFGKMKVYAVVWIDPSHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCER--- 77 (125)
T ss_pred CEEEEEEEcccCCCCCcccCCceEEEEEECCCcccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECC---
Confidence 4899999999999 689999999988 789999986 589999999999998644 2789999999999
Q ss_pred CCCCCCCCeeEEEEEeCccccccCCC--CCCCeEEEeecCCCCCCCCccccEEEE
Q 001987 73 GLFGSSGELMGRVRVPVSSIAAEDNH--MLPPTWFSLETPKTRKFTNKDCGKILL 125 (985)
Q Consensus 73 ~~~~~~d~~lG~~~i~L~~l~~~~~~--~~~~~W~~L~~~~~~~~~~~~~G~I~l 125 (985)
+ .+++++||++.++|.++...... .....||.|.++ . ++..|.|.+
T Consensus 78 ~--~~~~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~~-~----g~~~G~~~~ 125 (125)
T cd04051 78 P--SLGDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRRP-S----GKPQGVLNF 125 (125)
T ss_pred C--CCCCCcEEEEEEEHHHhhcccCCCCcceeEEEEeECC-C----CCcCeEEeC
Confidence 4 46899999999999999876431 245789999943 3 456788864
|
SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such |
| >cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC) | Back alignment and domain information |
|---|
Probab=99.55 E-value=5e-14 Score=136.16 Aligned_cols=115 Identities=22% Similarity=0.314 Sum_probs=96.5
Q ss_pred EEEEEEEEeecCCCCC--CCCCCCcEEEEEE------CCEEEEeeeccCCC-CCeEeEEEEEEeecCCCCEEEEEEEecC
Q 001987 537 VLTVALVEGVNLASSE--MTGLSDPYVVFTC------NGKTRTSSVQLQTC-DPQWHDILEFDAMEEPPSVLDVEVFDFD 607 (985)
Q Consensus 537 ~L~V~v~~a~~L~~~d--~~g~~DPyv~v~~------~~~~~kT~~~~~tl-nP~Wne~f~f~v~~~~~~~L~v~V~D~d 607 (985)
.|+|+|++|+||+..+ ..+.+||||++++ ...+.+|+++.++. ||.|||+|.|.+.......|.|+|||++
T Consensus 3 ~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~~~~l~~~V~d~~ 82 (128)
T cd00275 3 TLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVPELAFLRFVVYDED 82 (128)
T ss_pred EEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCCCeEEEEEEEEeCC
Confidence 6899999999999988 5789999999999 34678999987765 9999999999976554568999999999
Q ss_pred CCCCCCCccceEEEEeeccccCcccceEEEccccccC-CcceeEEEEEee
Q 001987 608 GPFDQATSLGHAEINFLKHTSTELADMWVSLEGKLAQ-SAQSKVHLRIFL 656 (985)
Q Consensus 608 ~~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~-~~~g~l~l~~~l 656 (985)
. + ++++||++.+++.++..+ ..|++|.++.+. ...|+|.+++.+
T Consensus 83 ~-~-~~~~iG~~~~~l~~l~~g---~~~~~l~~~~~~~~~~~~l~v~~~~ 127 (128)
T cd00275 83 S-G-DDDFLGQACLPLDSLRQG---YRHVPLLDSKGEPLELSTLFVHIDI 127 (128)
T ss_pred C-C-CCcEeEEEEEEhHHhcCc---eEEEEecCCCCCCCcceeEEEEEEE
Confidence 8 6 899999999999998543 468999875554 567889888864
|
PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking |
| >cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1 | Back alignment and domain information |
|---|
Probab=99.55 E-value=6.3e-15 Score=144.02 Aligned_cols=103 Identities=25% Similarity=0.436 Sum_probs=87.7
Q ss_pred CeEEEEEEEEeecCCCCCCCCCCCcEEEEEEC--C---EEEEeeeccCCCCCeEeEEEEEEeecC--CCCEEEEEEEecC
Q 001987 535 GWVLTVALVEGVNLASSEMTGLSDPYVVFTCN--G---KTRTSSVQLQTCDPQWHDILEFDAMEE--PPSVLDVEVFDFD 607 (985)
Q Consensus 535 ~g~L~V~v~~a~~L~~~d~~g~~DPyv~v~~~--~---~~~kT~~~~~tlnP~Wne~f~f~v~~~--~~~~L~v~V~D~d 607 (985)
.|.|+|+|++|++|+..|..|.+||||++++. + .+.+|+++++++||.|||+|.|.+... ....|.|+|||+|
T Consensus 14 ~~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~v~d~~ 93 (136)
T cd08402 14 AGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFEVPFEQIQKVHLIVTVLDYD 93 (136)
T ss_pred CCeEEEEEEEeeCCCcccCCCCCCCeEEEEEEECCcccceeeccceeCCCCCcccceEEEECCHHHhCCCEEEEEEEeCC
Confidence 46899999999999999999999999999994 2 357899999999999999999996432 2348999999999
Q ss_pred CCCCCCCccceEEEEeeccccCcccceEEEccc
Q 001987 608 GPFDQATSLGHAEINFLKHTSTELADMWVSLEG 640 (985)
Q Consensus 608 ~~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~~ 640 (985)
. +++|++||++.|++.. .+.....|+++..
T Consensus 94 ~-~~~~~~iG~~~i~~~~--~~~~~~~W~~~~~ 123 (136)
T cd08402 94 R-IGKNDPIGKVVLGCNA--TGAELRHWSDMLA 123 (136)
T ss_pred C-CCCCceeEEEEECCcc--CChHHHHHHHHHh
Confidence 8 7999999999999976 3455677888764
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: |
| >cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1) | Back alignment and domain information |
|---|
Probab=99.54 E-value=6.7e-14 Score=135.76 Aligned_cols=116 Identities=24% Similarity=0.401 Sum_probs=94.0
Q ss_pred EEEEEEEEeecCC-----CCCcEEEEEECC-------------eEEeecCccCCCCCeE-eeEEEEEEecCCCceEEEEE
Q 001987 5 RLYVYVLQGQDLL-----AKDSYVKVQIGK-------------HKSKSRILKNNSNPVW-NEEFVFRVHNIDDEELVVSV 65 (985)
Q Consensus 5 ~L~V~V~~Ar~L~-----~~DPyv~v~l~~-------------~~~kT~v~~~t~nP~w-nE~f~f~v~~~~~~~L~~~V 65 (985)
...|++++|+||+ ++||||++++.+ ++++|+++++++||+| ||+|.|.+. ..+.|.|+|
T Consensus 2 ~~~~~~~~A~~L~~~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~v~--~~~~L~v~V 79 (137)
T cd08691 2 SFSLSGLQARNLKKGMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVWHREQFVFVGL--PTDVLEIEV 79 (137)
T ss_pred EEEEEEEEeCCCCCccCCCCCceEEEEEECCCcccccccccccceeeeeeEcCCCCCceEceEEEEEcC--CCCEEEEEE
Confidence 3579999999998 799999999952 3689999999999999 999999983 456899999
Q ss_pred EecCCCCCCCCCCCCeeEEEEEeCccccccCCCCCCCeEEEeecCCCCCCCCccccEEEEEE
Q 001987 66 FQHNDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTNKDCGKILLTI 127 (985)
Q Consensus 66 ~D~d~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~~G~I~lsl 127 (985)
||++...+ ...+++||++.+||.++...+.......||+|+ ++.. .....|+|.+.+
T Consensus 80 ~D~~~~~~--~~~~d~lG~~~i~l~~l~~~~~~~~~~~~~~l~-k~~~--~s~v~G~~~l~~ 136 (137)
T cd08691 80 KDKFAKSR--PIIRRFLGKLSIPVQRLLERHAIGDQELSYTLG-RRTP--TDHVSGQLTFRF 136 (137)
T ss_pred EecCCCCC--ccCCceEEEEEEEHHHhcccccCCceEEEEECC-cCCC--CCcEEEEEEEEe
Confidence 99872111 113799999999999998776555577899999 5543 367889998875
|
NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C |
| >cd04041 C2A_fungal C2 domain first repeat; fungal group | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.2e-14 Score=134.92 Aligned_cols=94 Identities=23% Similarity=0.455 Sum_probs=80.6
Q ss_pred cEEEEEEEEeecCC-------CCCcEEEEEECC---eEEeecCccCCCCCeEeeEEEEEEecC---CCceEEEEEEecCC
Q 001987 4 TRLYVYVLQGQDLL-------AKDSYVKVQIGK---HKSKSRILKNNSNPVWNEEFVFRVHNI---DDEELVVSVFQHND 70 (985)
Q Consensus 4 ~~L~V~V~~Ar~L~-------~~DPyv~v~l~~---~~~kT~v~~~t~nP~wnE~f~f~v~~~---~~~~L~~~V~D~d~ 70 (985)
|.|+|+|++|+||+ .+||||+|++.+ ..++|+++++|+||.|||+|.|.+... ....|.|+|||+|
T Consensus 1 G~L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~d- 79 (111)
T cd04041 1 GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVLVTPDEVKAGERLSCRLWDSD- 79 (111)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCCccEEEEEccCCCccEeeeeECCCCCCccceeEEEEeCchhccCCCEEEEEEEeCC-
Confidence 57999999999998 579999999953 458999999999999999999987432 4578999999999
Q ss_pred CCCCCCCCCCeeEEEEEeCccccccCCCCCCCeEEEee
Q 001987 71 DSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLE 108 (985)
Q Consensus 71 ~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~ 108 (985)
+ .++|++||++.++|.++.. ...|+++.
T Consensus 80 --~--~~~dd~lG~~~i~l~~l~~------~~~~~~~~ 107 (111)
T cd04041 80 --R--FTADDRLGRVEIDLKELIE------DRNWMGRR 107 (111)
T ss_pred --C--CCCCCcceEEEEEHHHHhc------CCCCCccc
Confidence 4 5789999999999999984 34587775
|
C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan |
| >cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12 | Back alignment and domain information |
|---|
Probab=99.53 E-value=3.7e-14 Score=137.71 Aligned_cols=84 Identities=27% Similarity=0.487 Sum_probs=74.0
Q ss_pred CcEEEEEEEEeecCC------CCCcEEEEEECC-----eEEeecCccCCCCCeEeeEEEEEEe--cCCCceEEEEEEecC
Q 001987 3 STRLYVYVLQGQDLL------AKDSYVKVQIGK-----HKSKSRILKNNSNPVWNEEFVFRVH--NIDDEELVVSVFQHN 69 (985)
Q Consensus 3 ~~~L~V~V~~Ar~L~------~~DPyv~v~l~~-----~~~kT~v~~~t~nP~wnE~f~f~v~--~~~~~~L~~~V~D~d 69 (985)
.++|.|+|++|+||+ .+||||+|++.+ .+.||+++++++||+|||+|.|.++ ......|.|+|||+|
T Consensus 14 ~~~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~~~~~k~kT~v~k~t~nP~~nE~f~F~v~~~~l~~~~l~~~V~~~d 93 (136)
T cd08406 14 AERLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVKRDDTNPIFNEAMIFSVPAIVLQDLSLRVTVAEST 93 (136)
T ss_pred CCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCccccccCCccccCCCCCeeceeEEEECCHHHhCCcEEEEEEEeCC
Confidence 468999999999998 689999999963 2578999999999999999999986 467789999999999
Q ss_pred CCCCCCCCCCCeeEEEEEeCcc
Q 001987 70 DDSGLFGSSGELMGRVRVPVSS 91 (985)
Q Consensus 70 ~~~~~~~~~d~~lG~~~i~L~~ 91 (985)
+ .+++++||++.++...
T Consensus 94 ---~--~~~~~~iG~v~lg~~~ 110 (136)
T cd08406 94 ---E--DGKTPNVGHVIIGPAA 110 (136)
T ss_pred ---C--CCCCCeeEEEEECCCC
Confidence 4 5799999999997654
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl |
| >cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs) | Back alignment and domain information |
|---|
Probab=99.53 E-value=4.2e-14 Score=137.93 Aligned_cols=98 Identities=24% Similarity=0.501 Sum_probs=85.0
Q ss_pred EEEEEEEeecCC-----CCCcEEEEEEC----CeEEeecCccCCCCCeEeeEEEEEEecC---------------CCceE
Q 001987 6 LYVYVLQGQDLL-----AKDSYVKVQIG----KHKSKSRILKNNSNPVWNEEFVFRVHNI---------------DDEEL 61 (985)
Q Consensus 6 L~V~V~~Ar~L~-----~~DPyv~v~l~----~~~~kT~v~~~t~nP~wnE~f~f~v~~~---------------~~~~L 61 (985)
|.|+|++|+||+ .+||||+|+++ ..+++|++++++.||.|||+|.|.+... ....|
T Consensus 1 L~V~Vi~A~~L~~~~~g~~dPyv~v~~~~~~~~~~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~~l 80 (137)
T cd08675 1 LSVRVLECRDLALKSNGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKSEL 80 (137)
T ss_pred CEEEEEEccCCCcccCCCCCcEEEEEEecCCcCCeeccceeeCCCCCCcceEEEEEccccccccccccccccccccccEE
Confidence 689999999998 68999999998 6779999999999999999999997543 46789
Q ss_pred EEEEEecCCCCCCCCCCCCeeEEEEEeCccccccCCCCCCCeEEEeecCC
Q 001987 62 VVSVFQHNDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPK 111 (985)
Q Consensus 62 ~~~V~D~d~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~~~~ 111 (985)
.|+|||.+ . .++++|||++.++|.++... .....||+|.+..
T Consensus 81 ~i~V~d~~---~--~~~~~~IG~~~i~l~~l~~~---~~~~~W~~L~~~~ 122 (137)
T cd08675 81 RVELWHAS---M--VSGDDFLGEVRIPLQGLQQA---GSHQAWYFLQPRE 122 (137)
T ss_pred EEEEEcCC---c--CcCCcEEEEEEEehhhccCC---CcccceEecCCcC
Confidence 99999999 4 57899999999999998854 3468999998443
|
RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin |
| >cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17 | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.8e-14 Score=139.12 Aligned_cols=105 Identities=20% Similarity=0.276 Sum_probs=85.3
Q ss_pred CeEEEEEEEEeecCCCCCCCCCCCcEEEEEEC--C---EEEEeeeccCCCCCeEeEEEEEEeecC--CCCEEEEEEEecC
Q 001987 535 GWVLTVALVEGVNLASSEMTGLSDPYVVFTCN--G---KTRTSSVQLQTCDPQWHDILEFDAMEE--PPSVLDVEVFDFD 607 (985)
Q Consensus 535 ~g~L~V~v~~a~~L~~~d~~g~~DPyv~v~~~--~---~~~kT~~~~~tlnP~Wne~f~f~v~~~--~~~~L~v~V~D~d 607 (985)
.|.|+|+|++|+||+..|..|.+||||++++. + ++.+|+++++|+||+|||+|.|.+... ....|.|+|||+|
T Consensus 13 ~~~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~F~f~i~~~~l~~~~l~~~V~d~d 92 (135)
T cd08410 13 AGRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNESFSFKVPQEELENVSLVFTVYGHN 92 (135)
T ss_pred CCeEEEEEEEecCCCcccCCCCCCeEEEEEEEcCCcccceEcCccccCCCCCccceeEEEeCCHHHhCCCEEEEEEEeCC
Confidence 46899999999999999999999999999983 2 357899999999999999999996332 2347999999999
Q ss_pred CCCCCCCccceEEEEeeccccCcccceEEEcccc
Q 001987 608 GPFDQATSLGHAEINFLKHTSTELADMWVSLEGK 641 (985)
Q Consensus 608 ~~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~~~ 641 (985)
. .+++++||++.|...... +.....|..|...
T Consensus 93 ~-~~~~~~iG~~~l~~~~~~-~~~~~~W~~l~~~ 124 (135)
T cd08410 93 V-KSSNDFIGRIVIGQYSSG-PSETNHWRRMLNS 124 (135)
T ss_pred C-CCCCcEEEEEEEcCccCC-chHHHHHHHHHhC
Confidence 8 699999999986653322 2235778888653
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta- |
| >cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Probab=99.53 E-value=5.4e-14 Score=134.90 Aligned_cols=97 Identities=27% Similarity=0.531 Sum_probs=83.5
Q ss_pred CcEEEEEEEEeecCC-------CCCcEEEEEECC-----eEEeecCccCCCCCeEeeEEEEEEe--cCCCceEEEEEEec
Q 001987 3 STRLYVYVLQGQDLL-------AKDSYVKVQIGK-----HKSKSRILKNNSNPVWNEEFVFRVH--NIDDEELVVSVFQH 68 (985)
Q Consensus 3 ~~~L~V~V~~Ar~L~-------~~DPyv~v~l~~-----~~~kT~v~~~t~nP~wnE~f~f~v~--~~~~~~L~~~V~D~ 68 (985)
.+.|.|+|++|+||+ .+||||+|++.+ .+++|+++++++||.|||+|.|.++ +.....|.|+|||.
T Consensus 13 ~~~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~i~~~~l~~~~l~i~v~d~ 92 (123)
T cd08521 13 TGSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNETLKYHISKSQLETRTLQLSVWHH 92 (123)
T ss_pred CCEEEEEEEEecCCCCcCCCCCCCCcEEEEEEecCCCcCceeeccccCCCCCCcccceEEEeCCHHHhCCCEEEEEEEeC
Confidence 578999999999997 679999999853 4589999999999999999999985 23467899999999
Q ss_pred CCCCCCCCCCCCeeEEEEEeCccccccCCCCCCCeEEEe
Q 001987 69 NDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSL 107 (985)
Q Consensus 69 d~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L 107 (985)
+ + .+++++||++.++|.++..+. ....||+|
T Consensus 93 ~---~--~~~~~~iG~~~i~l~~l~~~~---~~~~w~~l 123 (123)
T cd08521 93 D---R--FGRNTFLGEVEIPLDSWDLDS---QQSEWYPL 123 (123)
T ss_pred C---C--CcCCceeeEEEEecccccccC---CCccEEEC
Confidence 9 4 578999999999999997552 36789987
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into |
| >cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7 | Back alignment and domain information |
|---|
Probab=99.53 E-value=6.4e-14 Score=134.83 Aligned_cols=98 Identities=26% Similarity=0.509 Sum_probs=84.4
Q ss_pred CcEEEEEEEEeecCC------CCCcEEEEEEC---CeEEeecCccCCCCCeEeeEEEEEE-e--cCCCceEEEEEEecCC
Q 001987 3 STRLYVYVLQGQDLL------AKDSYVKVQIG---KHKSKSRILKNNSNPVWNEEFVFRV-H--NIDDEELVVSVFQHND 70 (985)
Q Consensus 3 ~~~L~V~V~~Ar~L~------~~DPyv~v~l~---~~~~kT~v~~~t~nP~wnE~f~f~v-~--~~~~~~L~~~V~D~d~ 70 (985)
.+.|.|+|++|+||+ .+||||+|++. .++.+|+++++++||.|||+|.|.+ + ......|.|+|||++
T Consensus 15 ~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~~P~Wne~f~f~~~~~~~l~~~~l~~~v~d~d- 93 (125)
T cd08386 15 ESTLTLKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKLQQRVLYLQVLDYD- 93 (125)
T ss_pred CCEEEEEEEEecCCCCccCCCCCCceEEEEECCCCCcceeeeeecCCCCCccceeEEEcccCHHHhCCCEEEEEEEeCC-
Confidence 568999999999997 68999999994 4568999999999999999999984 2 245578999999999
Q ss_pred CCCCCCCCCCeeEEEEEeCccccccCCCCCCCeEEEee
Q 001987 71 DSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLE 108 (985)
Q Consensus 71 ~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~ 108 (985)
+ .+++++||++.++|.++.... ....|+.|.
T Consensus 94 --~--~~~~~~iG~~~i~l~~l~~~~---~~~~W~~l~ 124 (125)
T cd08386 94 --R--FSRNDPIGEVSLPLNKVDLTE---EQTFWKDLK 124 (125)
T ss_pred --C--CcCCcEeeEEEEecccccCCC---CcceEEecC
Confidence 4 578999999999999998652 478899986
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves |
| >cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10 | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.1e-14 Score=142.08 Aligned_cols=103 Identities=26% Similarity=0.445 Sum_probs=86.9
Q ss_pred CeEEEEEEEEeecCCCCCCCCCCCcEEEEEEC--C---EEEEeeeccCCCCCeEeEEEEEEeecC--CCCEEEEEEEecC
Q 001987 535 GWVLTVALVEGVNLASSEMTGLSDPYVVFTCN--G---KTRTSSVQLQTCDPQWHDILEFDAMEE--PPSVLDVEVFDFD 607 (985)
Q Consensus 535 ~g~L~V~v~~a~~L~~~d~~g~~DPyv~v~~~--~---~~~kT~~~~~tlnP~Wne~f~f~v~~~--~~~~L~v~V~D~d 607 (985)
.+.|+|+|++|++|++.|..|.+||||++++. + .+.+|+++++++||.|||+|.|.+... ....|.|+|||+|
T Consensus 13 ~~~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~~~~~~l~~~v~d~~ 92 (134)
T cd08403 13 AGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFDVPPENVDNVSLIIAVVDYD 92 (134)
T ss_pred CCEEEEEEEEeeCCCccccCCCCCceEEEEEEeCCcccceecCCcccCCCCCcccceEEEECCHHHhCCCEEEEEEEECC
Confidence 56899999999999999999999999999984 2 367899999999999999999996432 2347999999999
Q ss_pred CCCCCCCccceEEEEeeccccCcccceEEEccc
Q 001987 608 GPFDQATSLGHAEINFLKHTSTELADMWVSLEG 640 (985)
Q Consensus 608 ~~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~~ 640 (985)
. ++++++||++.|++.. .+.....|+++..
T Consensus 93 ~-~~~~~~IG~~~l~~~~--~~~~~~~w~~~~~ 122 (134)
T cd08403 93 R-VGHNELIGVCRVGPNA--DGQGREHWNEMLA 122 (134)
T ss_pred C-CCCCceeEEEEECCCC--CCchHHHHHHHHH
Confidence 8 7999999999999873 3455677888764
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind |
| >PLN03008 Phospholipase D delta | Back alignment and domain information |
|---|
Probab=99.53 E-value=4.9e-14 Score=166.92 Aligned_cols=101 Identities=23% Similarity=0.359 Sum_probs=86.3
Q ss_pred CCCCcEEEEEECCE-EEEeeeccCCCCCeEeEEEEEEeecCCCCEEEEEEEecCCCCCCCCccceEEEEeeccccCcccc
Q 001987 555 GLSDPYVVFTCNGK-TRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGPFDQATSLGHAEINFLKHTSTELAD 633 (985)
Q Consensus 555 g~~DPyv~v~~~~~-~~kT~~~~~tlnP~Wne~f~f~v~~~~~~~L~v~V~D~d~~~~~dd~lG~~~i~l~~l~~~~~~~ 633 (985)
++|||||+|.++++ ..+|+++++++||+|||+|.|.+ ..+...|.|+|||+|. ++ +|+||++.|||.++..+...+
T Consensus 75 ~tSDPYV~I~Lg~~rv~RTrVi~n~~NPvWNE~F~f~v-ah~~s~L~f~VkD~D~-~g-aD~IG~a~IPL~~L~~Ge~vd 151 (868)
T PLN03008 75 ITSDPYVTVVVPQATLARTRVLKNSQEPLWDEKFNISI-AHPFAYLEFQVKDDDV-FG-AQIIGTAKIPVRDIASGERIS 151 (868)
T ss_pred CCCCceEEEEECCcceeeEEeCCCCCCCCcceeEEEEe-cCCCceEEEEEEcCCc-cC-CceeEEEEEEHHHcCCCCceE
Confidence 47899999999875 56999999999999999999995 4566799999999998 76 589999999999999999999
Q ss_pred eEEEccccccCC--cceeEEEEEeeec
Q 001987 634 MWVSLEGKLAQS--AQSKVHLRIFLEN 658 (985)
Q Consensus 634 ~w~~L~~~~~~~--~~g~l~l~~~ls~ 658 (985)
.|++|.+..+.. .+++||+++.|..
T Consensus 152 ~Wl~Ll~~~~kp~k~~~kl~v~lqf~p 178 (868)
T PLN03008 152 GWFPVLGASGKPPKAETAIFIDMKFTP 178 (868)
T ss_pred EEEEccccCCCCCCCCcEEEEEEEEEE
Confidence 999998754433 3578999986543
|
|
| >cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13 | Back alignment and domain information |
|---|
Probab=99.52 E-value=4.7e-14 Score=136.87 Aligned_cols=84 Identities=25% Similarity=0.463 Sum_probs=74.5
Q ss_pred CcEEEEEEEEeecCC--------CCCcEEEEEECC-----eEEeecCccCCCCCeEeeEEEEEEe--cCCCceEEEEEEe
Q 001987 3 STRLYVYVLQGQDLL--------AKDSYVKVQIGK-----HKSKSRILKNNSNPVWNEEFVFRVH--NIDDEELVVSVFQ 67 (985)
Q Consensus 3 ~~~L~V~V~~Ar~L~--------~~DPyv~v~l~~-----~~~kT~v~~~t~nP~wnE~f~f~v~--~~~~~~L~~~V~D 67 (985)
.++|.|.|++|+||. .+||||+|++.. .++||+++++++||+|||+|.|.++ ......|.|+|||
T Consensus 14 ~~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k~~kkkT~v~k~t~nPvfNE~f~F~v~~~~L~~~~L~~~V~d 93 (138)
T cd08407 14 ANRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKKKQTKRAKHKINPVWNEMIMFELPSELLAASSVELEVLN 93 (138)
T ss_pred CCeEEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCcccceeccceeeCCCCCccccEEEEECCHHHhCccEEEEEEEe
Confidence 578999999999998 279999999974 2478999999999999999999997 4567889999999
Q ss_pred cCCCCCCCCCCCCeeEEEEEeCcc
Q 001987 68 HNDDSGLFGSSGELMGRVRVPVSS 91 (985)
Q Consensus 68 ~d~~~~~~~~~d~~lG~~~i~L~~ 91 (985)
+| + .+++++||++.+++..
T Consensus 94 ~d---~--~~~~d~iG~v~lg~~~ 112 (138)
T cd08407 94 QD---S--PGQSLPLGRCSLGLHT 112 (138)
T ss_pred CC---C--CcCcceeceEEecCcC
Confidence 99 5 5799999999999865
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy |
| >cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.5e-13 Score=127.73 Aligned_cols=80 Identities=19% Similarity=0.376 Sum_probs=69.8
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECC-----EEEEeeeccCCCCCeEeEEEEEEeecCCCCEEEEEEEec------
Q 001987 538 LTVALVEGVNLASSEMTGLSDPYVVFTCNG-----KTRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDF------ 606 (985)
Q Consensus 538 L~V~v~~a~~L~~~d~~g~~DPyv~v~~~~-----~~~kT~~~~~tlnP~Wne~f~f~v~~~~~~~L~v~V~D~------ 606 (985)
|.|+|.+|+||+ |.+||||++.++. .+.+|+++++|+||+|||+|+|.+ . ....|.+.|||+
T Consensus 1 L~V~V~~A~~L~-----~~sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~l-~-~s~~L~~~v~d~~~~~~~ 73 (118)
T cd08686 1 LNVIVHSAQGFK-----QSANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIEL-E-GSQTLRILCYEKCYSKVK 73 (118)
T ss_pred CEEEEEeCCCCC-----CCCCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEEe-C-CCCEEEEEEEEccccccc
Confidence 589999999995 4699999999852 468999999999999999999995 3 467999999998
Q ss_pred -CCCCCCCCccceEEEEeec
Q 001987 607 -DGPFDQATSLGHAEINFLK 625 (985)
Q Consensus 607 -d~~~~~dd~lG~~~i~l~~ 625 (985)
|. .++|+++|++.|.|..
T Consensus 74 ~d~-~~~d~~~G~g~i~Ld~ 92 (118)
T cd08686 74 LDG-EGTDAIMGKGQIQLDP 92 (118)
T ss_pred ccc-cCcccEEEEEEEEECH
Confidence 55 5889999999998865
|
The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr |
| >cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.4e-14 Score=139.61 Aligned_cols=104 Identities=27% Similarity=0.386 Sum_probs=91.0
Q ss_pred CeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----EEEEeeeccCCCCCeEeEEEEEEeecCC--CCEEEEEEEecC
Q 001987 535 GWVLTVALVEGVNLASSEMTGLSDPYVVFTCNG-----KTRTSSVQLQTCDPQWHDILEFDAMEEP--PSVLDVEVFDFD 607 (985)
Q Consensus 535 ~g~L~V~v~~a~~L~~~d~~g~~DPyv~v~~~~-----~~~kT~~~~~tlnP~Wne~f~f~v~~~~--~~~L~v~V~D~d 607 (985)
.+.|.|+|++|+||+..+..+.+||||++++.+ .+.+|++++++.||.|||+|.|.+.... ...|.|+|||++
T Consensus 13 ~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~~~~P~wne~f~f~i~~~~l~~~~l~~~v~d~~ 92 (134)
T cd00276 13 AERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDVPAEQLEEVSLVITVVDKD 92 (134)
T ss_pred CCEEEEEEEEeeCCCCccCCCCCCcEEEEEEEcCCeEeeeecCcceecCCCCeeeeeEEEECCHHHhCCcEEEEEEEecC
Confidence 468999999999999999899999999999853 2578999999999999999999964432 578999999999
Q ss_pred CCCCCCCccceEEEEeeccccCcccceEEEcccc
Q 001987 608 GPFDQATSLGHAEINFLKHTSTELADMWVSLEGK 641 (985)
Q Consensus 608 ~~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~~~ 641 (985)
. ++++++||++.+++.+ .+...+.|++|...
T Consensus 93 ~-~~~~~~lG~~~i~l~~--~~~~~~~W~~l~~~ 123 (134)
T cd00276 93 S-VGRNEVIGQVVLGPDS--GGEELEHWNEMLAS 123 (134)
T ss_pred C-CCCCceeEEEEECCCC--CCcHHHHHHHHHhC
Confidence 8 6899999999999999 56667889999763
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin |
| >cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain | Back alignment and domain information |
|---|
Probab=99.51 E-value=7.3e-14 Score=134.04 Aligned_cols=102 Identities=23% Similarity=0.370 Sum_probs=87.3
Q ss_pred CeEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CEEEEeeeccCCCCCeEeEEEEEEeecC---CCCEEEEEEEec
Q 001987 535 GWVLTVALVEGVNLASSEMTGLSDPYVVFTCN-----GKTRTSSVQLQTCDPQWHDILEFDAMEE---PPSVLDVEVFDF 606 (985)
Q Consensus 535 ~g~L~V~v~~a~~L~~~d~~g~~DPyv~v~~~-----~~~~kT~~~~~tlnP~Wne~f~f~v~~~---~~~~L~v~V~D~ 606 (985)
.+.|+|+|++|++|++.+..+.+||||++++. ....+|+++++++||+|||.|.|..... ....|.|+|||+
T Consensus 14 ~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~Wne~f~f~~~~~~~~~~~~l~~~v~d~ 93 (123)
T cd04035 14 NSALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYGITEEDIQRKTLRLLVLDE 93 (123)
T ss_pred CCEEEEEEEEeeCCCCCCCCCCCCceEEEEEecCCCCCCceeeeeecCCCCCCccceEEEcCCCHHHhCCCEEEEEEEEc
Confidence 56899999999999999988999999999983 3478999999999999999999963322 246899999999
Q ss_pred CCCCCCCCccceEEEEeeccccCcccceEEEc
Q 001987 607 DGPFDQATSLGHAEINFLKHTSTELADMWVSL 638 (985)
Q Consensus 607 d~~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L 638 (985)
+. + .+++||++.+++.++..+.....|+.|
T Consensus 94 ~~-~-~~~~iG~~~i~l~~l~~~~~~~~~~~~ 123 (123)
T cd04035 94 DR-F-GNDFLGETRIPLKKLKPNQTKQFNICL 123 (123)
T ss_pred CC-c-CCeeEEEEEEEcccCCCCcceEeeccC
Confidence 98 6 889999999999999887766666654
|
Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain |
| >cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1) | Back alignment and domain information |
|---|
Probab=99.51 E-value=3.5e-13 Score=132.63 Aligned_cols=116 Identities=19% Similarity=0.341 Sum_probs=91.6
Q ss_pred EEEEEEEEeec--CC------CCCcEEEEEEC-----CeEEeecCccCCCCCeEeeEEEEEEecC--------CCceEEE
Q 001987 5 RLYVYVLQGQD--LL------AKDSYVKVQIG-----KHKSKSRILKNNSNPVWNEEFVFRVHNI--------DDEELVV 63 (985)
Q Consensus 5 ~L~V~V~~Ar~--L~------~~DPyv~v~l~-----~~~~kT~v~~~t~nP~wnE~f~f~v~~~--------~~~~L~~ 63 (985)
...++|..|++ |+ .+||||++++. .++.||+++++|+||+|||+|.|.|... ....|.|
T Consensus 3 ~~el~i~~~~~~~l~~~~~~~~~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~~ 82 (155)
T cd08690 3 SIELTIVRCIGIPLPSGWNPKDLDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGLKF 82 (155)
T ss_pred ceEEEEEEeeccccCCCcCCCCCCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCcEEE
Confidence 35667777777 44 58999999972 3679999999999999999999999522 2567999
Q ss_pred EEEecCCCCCCCCCCCCeeEEEEEeCccccccCCCCCCCeEEEeecCCCCCCCCccccEEEEEEEEEec
Q 001987 64 SVFQHNDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTNKDCGKILLTISLNGK 132 (985)
Q Consensus 64 ~V~D~d~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~~G~I~lsl~~~~~ 132 (985)
+|||.+ .| .++|++||++.++|..+.... ....|++|.+.+ ....|+|.+.+..-..
T Consensus 83 ~V~d~~---~f-~~~D~~iG~~~i~L~~l~~~~---~~~~~~~L~~~~-----k~~Gg~l~v~ir~r~p 139 (155)
T cd08690 83 EVYHKG---GF-LRSDKLLGTAQVKLEPLETKC---EIHESVDLMDGR-----KATGGKLEVKVRLREP 139 (155)
T ss_pred EEEeCC---Cc-ccCCCeeEEEEEEcccccccC---cceEEEEhhhCC-----CCcCCEEEEEEEecCC
Confidence 999999 53 468999999999999997652 355699987332 3467899999988543
|
Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha |
| >cd04032 C2_Perforin C2 domain of Perforin | Back alignment and domain information |
|---|
Probab=99.51 E-value=6.9e-14 Score=133.69 Aligned_cols=86 Identities=29% Similarity=0.480 Sum_probs=77.5
Q ss_pred cEEEEEEEEeecCC-----CCCcEEEEEECCeEEeecCccCCCCCeEeeEEEEEE-ecCCCceEEEEEEecCCCCCCCCC
Q 001987 4 TRLYVYVLQGQDLL-----AKDSYVKVQIGKHKSKSRILKNNSNPVWNEEFVFRV-HNIDDEELVVSVFQHNDDSGLFGS 77 (985)
Q Consensus 4 ~~L~V~V~~Ar~L~-----~~DPyv~v~l~~~~~kT~v~~~t~nP~wnE~f~f~v-~~~~~~~L~~~V~D~d~~~~~~~~ 77 (985)
++|+|+|++|++|+ .+||||+|+++++++||+++++++||+|||+|.|.. .......|.|+|||++ . .+
T Consensus 28 ~~L~V~V~~A~~L~~d~~g~~DPYVkV~~~~~~~kT~vi~~t~nPvWNE~F~f~~~~~~~~~~L~v~V~D~d---~--~s 102 (127)
T cd04032 28 ATLTVTVLRATGLWGDYFTSTDGYVKVFFGGQEKRTEVIWNNNNPRWNATFDFGSVELSPGGKLRFEVWDRD---N--GW 102 (127)
T ss_pred EEEEEEEEECCCCCcCcCCCCCeEEEEEECCccccCceecCCCCCcCCCEEEEecccCCCCCEEEEEEEeCC---C--CC
Confidence 68999999999998 689999999999999999999999999999999974 3456789999999999 4 57
Q ss_pred CCCeeEEEEEeCccccc
Q 001987 78 SGELMGRVRVPVSSIAA 94 (985)
Q Consensus 78 ~d~~lG~~~i~L~~l~~ 94 (985)
+|++||++.++|.....
T Consensus 103 ~dd~IG~~~i~l~~~~~ 119 (127)
T cd04032 103 DDDLLGTCSVVPEAGVH 119 (127)
T ss_pred CCCeeEEEEEEecCCce
Confidence 99999999999986653
|
Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few |
| >cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs) | Back alignment and domain information |
|---|
Probab=99.50 E-value=2e-13 Score=129.77 Aligned_cols=110 Identities=22% Similarity=0.398 Sum_probs=84.5
Q ss_pred EEEEEEEeecCC---CCCcEEEEEECCeE-EeecCccCCCCCeEeeEEEEEEecC--CCceEEEEEEecCCCCCCCCCCC
Q 001987 6 LYVYVLQGQDLL---AKDSYVKVQIGKHK-SKSRILKNNSNPVWNEEFVFRVHNI--DDEELVVSVFQHNDDSGLFGSSG 79 (985)
Q Consensus 6 L~V~V~~Ar~L~---~~DPyv~v~l~~~~-~kT~v~~~t~nP~wnE~f~f~v~~~--~~~~L~~~V~D~d~~~~~~~~~d 79 (985)
|.|+|++|+||+ .+||||++++++++ ++|+++++ +||.|||+|.|.++.. ....|.|.+||.+ . .+++
T Consensus 2 L~v~vi~a~~l~~~~~~dpyv~v~~~~~~~~kT~~~~~-~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~---~--~~~~ 75 (117)
T cd08383 2 LRLRILEAKNLPSKGTRDPYCTVSLDQVEVARTKTVEK-LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKR---S--KDRD 75 (117)
T ss_pred eEEEEEEecCCCcCCCCCceEEEEECCEEeEecceEEC-CCCcccceEEEecCCccccEEEEEEEEEecc---c--CCCe
Confidence 889999999998 79999999998754 89999999 9999999999998532 3456777788877 3 3456
Q ss_pred CeeEEEEEeCccccccCCCCCCCeEEEeecCCCCCCCCccccEEEEEEEE
Q 001987 80 ELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTNKDCGKILLTISL 129 (985)
Q Consensus 80 ~~lG~~~i~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~~G~I~lsl~~ 129 (985)
.++|++.+ ..+..+ .....||+|. ++..+ ....|+|+|.+.|
T Consensus 76 ~~~g~v~l--~~~~~~---~~~~~w~~L~-~~~~~--~~~~G~l~l~~~~ 117 (117)
T cd08383 76 IVIGKVAL--SKLDLG---QGKDEWFPLT-PVDPD--SEVQGSVRLRARY 117 (117)
T ss_pred eEEEEEEe--cCcCCC---CcceeEEECc-cCCCC--CCcCceEEEEEEC
Confidence 67776555 444333 2367899998 44332 4578999999876
|
RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 |
| >cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.5e-13 Score=130.49 Aligned_cols=115 Identities=23% Similarity=0.382 Sum_probs=93.8
Q ss_pred cEEEEEEEEeecCC-----CCCcEEEEEECCe-EEeecCccCCCCCeEeeEEEEEEecCCCceEEEEEEecCCCCCCCCC
Q 001987 4 TRLYVYVLQGQDLL-----AKDSYVKVQIGKH-KSKSRILKNNSNPVWNEEFVFRVHNIDDEELVVSVFQHNDDSGLFGS 77 (985)
Q Consensus 4 ~~L~V~V~~Ar~L~-----~~DPyv~v~l~~~-~~kT~v~~~t~nP~wnE~f~f~v~~~~~~~L~~~V~D~d~~~~~~~~ 77 (985)
.+|.|+|++|+.+. .+||||+|+++++ .++|+++++++||.|||+|.|.+. ..+.|.|+|||++ . .+
T Consensus 2 ~~L~V~i~~a~l~~~~~~~~~dPyv~v~~~~~~~~kT~v~~~t~~P~Wne~f~~~~~--~~~~l~~~V~d~~---~--~~ 74 (125)
T cd04021 2 SQLQITVESAKLKSNSKSFKPDPYVEVTVDGQPPKKTEVSKKTSNPKWNEHFTVLVT--PQSTLEFKVWSHH---T--LK 74 (125)
T ss_pred ceEEEEEEeeECCCCCcCCCCCeEEEEEECCcccEEeeeeCCCCCCccccEEEEEeC--CCCEEEEEEEeCC---C--CC
Confidence 47999999998444 6999999999887 799999999999999999999983 4678999999999 4 57
Q ss_pred CCCeeEEEEEeCccccccCCCCCCC--eEEEeecCCCCCCCCccccEEEEEE
Q 001987 78 SGELMGRVRVPVSSIAAEDNHMLPP--TWFSLETPKTRKFTNKDCGKILLTI 127 (985)
Q Consensus 78 ~d~~lG~~~i~L~~l~~~~~~~~~~--~W~~L~~~~~~~~~~~~~G~I~lsl 127 (985)
++++||++.++|.++...+...... .|++|.++..+ .....|+|.+.+
T Consensus 75 ~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~G~~~~~~ 124 (125)
T cd04021 75 ADVLLGEASLDLSDILKNHNGKLENVKLTLNLSSENKG--SSVKVGELTVIL 124 (125)
T ss_pred CCcEEEEEEEEHHHhHhhcCCCccceEEEEEEEccCCC--cceeeeeEEEEe
Confidence 8999999999999998764433333 58999844421 246789988865
|
E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e |
| >cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus) | Back alignment and domain information |
|---|
Probab=99.50 E-value=6.3e-14 Score=133.97 Aligned_cols=104 Identities=13% Similarity=0.202 Sum_probs=82.9
Q ss_pred CCCeEEEEEEEEeecCCCCCCCCCCCcEEEEEEC--C---EEEEeeeccCCC-CCeEeEEEEEEeecC-CCCEEEEEEEe
Q 001987 533 GDGWVLTVALVEGVNLASSEMTGLSDPYVVFTCN--G---KTRTSSVQLQTC-DPQWHDILEFDAMEE-PPSVLDVEVFD 605 (985)
Q Consensus 533 ~~~g~L~V~v~~a~~L~~~d~~g~~DPyv~v~~~--~---~~~kT~~~~~tl-nP~Wne~f~f~v~~~-~~~~L~v~V~D 605 (985)
...|.|+|.|++|+||++.+..+.+||||++++- + .+.||+++++|+ ||+|||.|.|++... ....|.|+|||
T Consensus 11 p~~~rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~~~KkKT~v~k~t~~~P~fNEsF~Fdv~~~~~~v~l~v~v~d 90 (135)
T cd08692 11 AVNSRIQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGLLYKKKTRLVKSSNGQVKWGETMIFPVTQQEHGIQFLIKLYS 90 (135)
T ss_pred CcCCeEEEEEEEccCCCcccCCCCCCcEEEEEEEECCCcceeecCccEECCCCCceecceEEEeCCchhheeEEEEEEEe
Confidence 3467899999999999998667788999999883 2 467899999996 699999999997432 23489999999
Q ss_pred cCCCCCCCCccceEEEEeeccccCcccceEEEc
Q 001987 606 FDGPFDQATSLGHAEINFLKHTSTELADMWVSL 638 (985)
Q Consensus 606 ~d~~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L 638 (985)
+|. .+++|+||++.+...... +...+.|...
T Consensus 91 ~~~-~~~n~~IG~v~lG~~~~~-~~~~~hW~~m 121 (135)
T cd08692 91 RSS-VRRKHFLGQVWISSDSSS-SEAVEQWKDT 121 (135)
T ss_pred CCC-CcCCceEEEEEECCccCC-chhhhhHHHH
Confidence 998 689999999999987632 2234566554
|
Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho |
| >cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16 | Back alignment and domain information |
|---|
Probab=99.50 E-value=3e-14 Score=138.98 Aligned_cols=104 Identities=18% Similarity=0.318 Sum_probs=86.9
Q ss_pred CeEEEEEEEEeecCCCCCCCCCCCcEEEEEEC---C---EEEEeeeccCCCCCeEeEEEEEEeec--CCCCEEEEEEEec
Q 001987 535 GWVLTVALVEGVNLASSEMTGLSDPYVVFTCN---G---KTRTSSVQLQTCDPQWHDILEFDAME--EPPSVLDVEVFDF 606 (985)
Q Consensus 535 ~g~L~V~v~~a~~L~~~d~~g~~DPyv~v~~~---~---~~~kT~~~~~tlnP~Wne~f~f~v~~--~~~~~L~v~V~D~ 606 (985)
.+.|.|+|++|+||++.+..|.+||||++++. + .+++|+++++++||+|||+|.|.+.. .....|.|+|||+
T Consensus 14 ~~~L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~~~~~~~kT~v~~~t~nPvfnEtF~f~i~~~~l~~~~L~~~V~~~ 93 (138)
T cd08408 14 TGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSKTSIRRGQPDPEFKETFVFQVALFQLSEVTLMFSVYNK 93 (138)
T ss_pred CCeEEEEEEEecCCCccccCCCCCeeEEEEEEeCCCcceeeccceeecCCCCCcEeeeEEEECCHHHhCccEEEEEEEEC
Confidence 56899999999999999999999999999994 2 25699999999999999999999643 3456999999999
Q ss_pred CCCCCCCCccceEEEEeeccccCcccceEEEccc
Q 001987 607 DGPFDQATSLGHAEINFLKHTSTELADMWVSLEG 640 (985)
Q Consensus 607 d~~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~~ 640 (985)
|. ++++++||++.+++..... .....|..+..
T Consensus 94 ~~-~~~~~~iG~v~l~~~~~~~-~~~~hW~~~l~ 125 (138)
T cd08408 94 RK-MKRKEMIGWFSLGLNSSGE-EEEEHWNEMKE 125 (138)
T ss_pred CC-CCCCcEEEEEEECCcCCCc-hHHHHHHHHHh
Confidence 98 7999999999998875332 23456877753
|
Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle |
| >cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP) | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.4e-13 Score=134.95 Aligned_cols=86 Identities=34% Similarity=0.579 Sum_probs=79.3
Q ss_pred cEEEEEEEEeecCC-----CCCcEEEEEECCeEEeecCccCCCCCeEeeEEEEEEecCCCceEEEEEEecCCCCCCCCCC
Q 001987 4 TRLYVYVLQGQDLL-----AKDSYVKVQIGKHKSKSRILKNNSNPVWNEEFVFRVHNIDDEELVVSVFQHNDDSGLFGSS 78 (985)
Q Consensus 4 ~~L~V~V~~Ar~L~-----~~DPyv~v~l~~~~~kT~v~~~t~nP~wnE~f~f~v~~~~~~~L~~~V~D~d~~~~~~~~~ 78 (985)
|.|+|+|++|+||+ .+||||++++++++++|+++++++||+|||+|.|.++++ ...|.|+|||++ + .++
T Consensus 2 G~L~V~Vi~a~nL~~~d~~~sDPYV~v~~g~~~~kT~vvk~t~nP~WnE~f~f~i~~~-~~~l~~~V~D~d---~--~~~ 75 (145)
T cd04038 2 GLLKVRVVRGTNLAVRDFTSSDPYVVLTLGNQKVKTRVIKKNLNPVWNEELTLSVPNP-MAPLKLEVFDKD---T--FSK 75 (145)
T ss_pred eEEEEEEEeeECCCCCCCCCcCcEEEEEECCEEEEeeeEcCCCCCeecccEEEEecCC-CCEEEEEEEECC---C--CCC
Confidence 68999999999997 789999999999999999999999999999999999544 788999999999 5 578
Q ss_pred CCeeEEEEEeCcccccc
Q 001987 79 GELMGRVRVPVSSIAAE 95 (985)
Q Consensus 79 d~~lG~~~i~L~~l~~~ 95 (985)
|++||++.+++.++...
T Consensus 76 dd~iG~a~i~l~~l~~~ 92 (145)
T cd04038 76 DDSMGEAEIDLEPLVEA 92 (145)
T ss_pred CCEEEEEEEEHHHhhhh
Confidence 99999999999998765
|
ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i |
| >cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17 | Back alignment and domain information |
|---|
Probab=99.49 E-value=2e-13 Score=130.96 Aligned_cols=98 Identities=26% Similarity=0.429 Sum_probs=84.3
Q ss_pred CcEEEEEEEEeecCC-------CCCcEEEEEEC---CeEEeecCccCCCCCeEeeEEEEEEec--CCCceEEEEEEecCC
Q 001987 3 STRLYVYVLQGQDLL-------AKDSYVKVQIG---KHKSKSRILKNNSNPVWNEEFVFRVHN--IDDEELVVSVFQHND 70 (985)
Q Consensus 3 ~~~L~V~V~~Ar~L~-------~~DPyv~v~l~---~~~~kT~v~~~t~nP~wnE~f~f~v~~--~~~~~L~~~V~D~d~ 70 (985)
.+.|.|+|++|+||+ .+||||+|++. ...++|+++++++||.|||+|.|.++. .....|.|.|||.+
T Consensus 13 ~~~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~~~~~~T~v~~~~~~P~wne~f~f~i~~~~l~~~~l~i~v~d~~- 91 (123)
T cd08390 13 EEQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRSLQSKVKRKTQNPNFDETFVFQVSFKELQRRTLRLSVYDVD- 91 (123)
T ss_pred CCEEEEEEEEecCCCCccCCCCCCCcEEEEEEeeCCCCceEeeeEcCCCCCccceEEEEEcCHHHhcccEEEEEEEECC-
Confidence 578999999999998 57999999985 345899999999999999999999862 34578999999999
Q ss_pred CCCCCCCCCCeeEEEEEeCccccccCCCCCCCeEEEee
Q 001987 71 DSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLE 108 (985)
Q Consensus 71 ~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~ 108 (985)
. .+++++||++.++|.++.... ....|++|+
T Consensus 92 --~--~~~~~~iG~~~i~L~~l~~~~---~~~~w~~L~ 122 (123)
T cd08390 92 --R--FSRHCIIGHVLFPLKDLDLVK---GGVVWRDLE 122 (123)
T ss_pred --c--CCCCcEEEEEEEeccceecCC---CceEEEeCC
Confidence 4 568999999999999998763 356899987
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat |
| >cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.1e-13 Score=131.09 Aligned_cols=97 Identities=26% Similarity=0.469 Sum_probs=85.2
Q ss_pred cEEEEEEEEeecCC------CCCcEEEEEECCeEEeecCccC-CCCCeEeeEEEEEEecC---CCceEEEEEEecCCCCC
Q 001987 4 TRLYVYVLQGQDLL------AKDSYVKVQIGKHKSKSRILKN-NSNPVWNEEFVFRVHNI---DDEELVVSVFQHNDDSG 73 (985)
Q Consensus 4 ~~L~V~V~~Ar~L~------~~DPyv~v~l~~~~~kT~v~~~-t~nP~wnE~f~f~v~~~---~~~~L~~~V~D~d~~~~ 73 (985)
+.|.|+|++|+||+ .+||||+|++.+...+|++.++ ++||.|||+|.|.+..+ ....|.|+|||.+ .
T Consensus 1 g~L~V~V~~A~~L~~~~~~~~~dpyv~v~~~~~~~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~---~ 77 (124)
T cd04049 1 GTLEVLLISAKGLQDTDFLGKIDPYVIIQCRTQERKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKD---N 77 (124)
T ss_pred CeEEEEEEecCCCCCCCCCCCcCceEEEEECCEeeeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECc---c
Confidence 57999999999998 7899999999988899999885 99999999999999644 3678999999999 4
Q ss_pred CCCCCCCeeEEEEEeCccccccCCCCCCCeEEEee
Q 001987 74 LFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLE 108 (985)
Q Consensus 74 ~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~ 108 (985)
.+++++||++.++|.++...+ ....|+.|.
T Consensus 78 --~~~d~~iG~~~i~l~~l~~~~---~~~~~~~l~ 107 (124)
T cd04049 78 --FSDDDFIGEATIHLKGLFEEG---VEPGTAELV 107 (124)
T ss_pred --CCCCCeEEEEEEEhHHhhhCC---CCcCceEee
Confidence 468999999999999998653 357899998
|
In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai |
| >cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15 | Back alignment and domain information |
|---|
Probab=99.48 E-value=4.3e-14 Score=138.01 Aligned_cols=104 Identities=16% Similarity=0.231 Sum_probs=86.9
Q ss_pred CeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----EEEEeeeccCCCCCeEeEEEEEEeec--CCCCEEEEEEEecC
Q 001987 535 GWVLTVALVEGVNLASSEMTGLSDPYVVFTCNG-----KTRTSSVQLQTCDPQWHDILEFDAME--EPPSVLDVEVFDFD 607 (985)
Q Consensus 535 ~g~L~V~v~~a~~L~~~d~~g~~DPyv~v~~~~-----~~~kT~~~~~tlnP~Wne~f~f~v~~--~~~~~L~v~V~D~d 607 (985)
.+.|.|+|++|+||++.+ .+.+||||++++.. .+++|+++++++||+|||.|.|.+.. .....|.|+|||.|
T Consensus 14 ~~~L~V~V~~a~nL~~~~-~~~~d~yVkv~l~~~~~~~~~~kT~v~~~~~nP~fnE~F~f~i~~~~l~~~~L~~~V~~~~ 92 (137)
T cd08409 14 LNRLTVVVLRARGLRQLD-HAHTSVYVKVSLMIHNKVVKTKKTEVVDGAASPSFNESFSFKVTSRQLDTASLSLSVMQSG 92 (137)
T ss_pred CCeEEEEEEEecCCCccc-CCCCCeEEEEEEEECCEEeeeeecccEeCCCCCcccceEEEECCHHHhCccEEEEEEEeCC
Confidence 358999999999999999 88899999999852 36689999999999999999999642 22368999999999
Q ss_pred CCCCCCCccceEEEEeeccccCcccceEEEccc
Q 001987 608 GPFDQATSLGHAEINFLKHTSTELADMWVSLEG 640 (985)
Q Consensus 608 ~~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~~ 640 (985)
. ++++++||++.|.......+...+.|..+-.
T Consensus 93 ~-~~~~~~lG~v~ig~~~~~~~~~~~hW~~~~~ 124 (137)
T cd08409 93 G-VRKSKLLGRVVLGPFMYARGKELEHWNDMLS 124 (137)
T ss_pred C-CCCcceEEEEEECCcccCCChHHHHHHHHHh
Confidence 8 7999999999998765555666677776653
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id |
| >cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.3e-13 Score=128.96 Aligned_cols=107 Identities=26% Similarity=0.454 Sum_probs=89.3
Q ss_pred EEEEEEEeecCC------CCCcEEEEEECC-eEEeecCccCCCCCeEeeEEEEEEecCCCceEEEEEEecCCCCCCCCCC
Q 001987 6 LYVYVLQGQDLL------AKDSYVKVQIGK-HKSKSRILKNNSNPVWNEEFVFRVHNIDDEELVVSVFQHNDDSGLFGSS 78 (985)
Q Consensus 6 L~V~V~~Ar~L~------~~DPyv~v~l~~-~~~kT~v~~~t~nP~wnE~f~f~v~~~~~~~L~~~V~D~d~~~~~~~~~ 78 (985)
|+|+|++|++|+ .+||||+|.+.+ ..++|+++.++.||.|||+|.|.+.....+.|.|+|||++ . .++
T Consensus 1 l~v~vi~a~~L~~~~~~~~~dpyv~v~~~~~~~~~T~v~~~~~~P~Wne~f~~~~~~~~~~~l~~~v~d~~---~--~~~ 75 (115)
T cd04040 1 LTVDVISAENLPSADRNGKSDPFVKFYLNGEKVFKTKTIKKTLNPVWNESFEVPVPSRVRAVLKVEVYDWD---R--GGK 75 (115)
T ss_pred CEEEEEeeeCCCCCCCCCCCCCeEEEEECCCcceeeceecCCCCCcccccEEEEeccCCCCEEEEEEEeCC---C--CCC
Confidence 689999999998 689999999975 4489999999999999999999986556789999999999 4 578
Q ss_pred CCeeEEEEEeCccccccCCCCCCCeEEEeecCCCCCCCCccccEEEE
Q 001987 79 GELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTNKDCGKILL 125 (985)
Q Consensus 79 d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~~G~I~l 125 (985)
+++||++.+++.++..+. ....|++|. +++ ....|.+.+
T Consensus 76 ~~~iG~~~~~l~~l~~~~---~~~~~~~L~-~~g----~~~~~~~~~ 114 (115)
T cd04040 76 DDLLGSAYIDLSDLEPEE---TTELTLPLD-GQG----GGKLGAVFL 114 (115)
T ss_pred CCceEEEEEEHHHcCCCC---cEEEEEECc-CCC----CccCceEEc
Confidence 999999999999987642 367899998 443 234566643
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. |
| >cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Probab=99.48 E-value=2e-13 Score=128.33 Aligned_cols=98 Identities=18% Similarity=0.380 Sum_probs=83.7
Q ss_pred CCCcEEEEEECCe-EEeecCccCCCCCeEeeEEEEEEecCCCceEEEEEEecCCCCCCCCCCCCeeEEEEEeCccccccC
Q 001987 18 AKDSYVKVQIGKH-KSKSRILKNNSNPVWNEEFVFRVHNIDDEELVVSVFQHNDDSGLFGSSGELMGRVRVPVSSIAAED 96 (985)
Q Consensus 18 ~~DPyv~v~l~~~-~~kT~v~~~t~nP~wnE~f~f~v~~~~~~~L~~~V~D~d~~~~~~~~~d~~lG~~~i~L~~l~~~~ 96 (985)
.+||||+|+++++ .++|++++++.||.|||+|.|.+.+.....|.|.|||.+ . . ++++||++.++|.++....
T Consensus 12 ~~dPYv~v~v~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~i~v~d~~---~--~-~d~~iG~~~v~L~~l~~~~ 85 (111)
T cd04052 12 LLSPYAELYLNGKLVYTTRVKKKTNNPSWNASTEFLVTDRRKSRVTVVVKDDR---D--R-HDPVLGSVSISLNDLIDAT 85 (111)
T ss_pred CCCceEEEEECCEEEEEEeeeccCCCCccCCceEEEecCcCCCEEEEEEEECC---C--C-CCCeEEEEEecHHHHHhhh
Confidence 5899999999875 589999999999999999999996666788999999999 4 4 8999999999999986432
Q ss_pred CCCCCCeEEEeecCCCCCCCCccccEEEEEEEEEe
Q 001987 97 NHMLPPTWFSLETPKTRKFTNKDCGKILLTISLNG 131 (985)
Q Consensus 97 ~~~~~~~W~~L~~~~~~~~~~~~~G~I~lsl~~~~ 131 (985)
.....||+|.+ ...|+|++++.|.|
T Consensus 86 --~~~~~w~~L~~--------~~~G~i~~~~~~~p 110 (111)
T cd04052 86 --SVGQQWFPLSG--------NGQGRIRISALWKP 110 (111)
T ss_pred --hccceeEECCC--------CCCCEEEEEEEEec
Confidence 23579999982 35799999999976
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. |
| >cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16 | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.9e-13 Score=133.43 Aligned_cols=97 Identities=29% Similarity=0.517 Sum_probs=80.4
Q ss_pred CcEEEEEEEEeecCC------CCCcEEEEEECC------eEEeecCccCCCCCeEeeEEEEEEe--cCCCceEEEEEEec
Q 001987 3 STRLYVYVLQGQDLL------AKDSYVKVQIGK------HKSKSRILKNNSNPVWNEEFVFRVH--NIDDEELVVSVFQH 68 (985)
Q Consensus 3 ~~~L~V~V~~Ar~L~------~~DPyv~v~l~~------~~~kT~v~~~t~nP~wnE~f~f~v~--~~~~~~L~~~V~D~ 68 (985)
.++|.|+|++|+||+ .+||||++++.+ .++||+++++++||+|||+|.|.++ +.....|.|.|||.
T Consensus 14 ~~~L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~~~~~~~kT~v~~~t~nPvfnEtF~f~i~~~~l~~~~L~~~V~~~ 93 (138)
T cd08408 14 TGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSKTSIRRGQPDPEFKETFVFQVALFQLSEVTLMFSVYNK 93 (138)
T ss_pred CCeEEEEEEEecCCCccccCCCCCeeEEEEEEeCCCcceeeccceeecCCCCCcEeeeEEEECCHHHhCccEEEEEEEEC
Confidence 579999999999998 689999999963 2479999999999999999999987 46778999999999
Q ss_pred CCCCCCCCCCCCeeEEEEEeCccccccCCCCCCCeEEEee
Q 001987 69 NDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLE 108 (985)
Q Consensus 69 d~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~ 108 (985)
+ + .+++++||++.+++.....+ ....|+.+.
T Consensus 94 ~---~--~~~~~~iG~v~l~~~~~~~~----~~~hW~~~l 124 (138)
T cd08408 94 R---K--MKRKEMIGWFSLGLNSSGEE----EEEHWNEMK 124 (138)
T ss_pred C---C--CCCCcEEEEEEECCcCCCch----HHHHHHHHH
Confidence 9 5 57999999999988754422 124566654
|
Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle |
| >cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4 | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.1e-13 Score=136.81 Aligned_cols=98 Identities=29% Similarity=0.514 Sum_probs=83.5
Q ss_pred CcEEEEEEEEeecCC------CCCcEEEEEEC-----CeEEeecCccCCCCCeEeeEEEEEEe---cCCCceEEEEEEec
Q 001987 3 STRLYVYVLQGQDLL------AKDSYVKVQIG-----KHKSKSRILKNNSNPVWNEEFVFRVH---NIDDEELVVSVFQH 68 (985)
Q Consensus 3 ~~~L~V~V~~Ar~L~------~~DPyv~v~l~-----~~~~kT~v~~~t~nP~wnE~f~f~v~---~~~~~~L~~~V~D~ 68 (985)
.++|.|+|++|+||+ .+||||+|++. ..++||+++++++||.|||+|.|.+. ......|.|+|||+
T Consensus 26 ~g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~~~~~~~~kT~vi~~t~nP~WnE~f~f~~~~~~~l~~~~L~i~V~d~ 105 (162)
T cd04020 26 TGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVWNHTFVYDGVSPEDLSQACLELTVWDH 105 (162)
T ss_pred CceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcCCCCCcceeCCccCCCCCCCCCCEEEEecCCHHHhCCCEEEEEEEeC
Confidence 478999999999998 68999999984 25689999999999999999999842 33456899999999
Q ss_pred CCCCCCCCCCCCeeEEEEEeCccccccCCCCCCCeEEEee
Q 001987 69 NDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLE 108 (985)
Q Consensus 69 d~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~ 108 (985)
+ + .+++++||++.+++.++...+ ....|+.|.
T Consensus 106 d---~--~~~d~~lG~v~i~l~~~~~~~---~~~~w~~~~ 137 (162)
T cd04020 106 D---K--LSSNDFLGGVRLGLGTGKSYG---QAVDWMDST 137 (162)
T ss_pred C---C--CCCCceEEEEEEeCCccccCC---CccccccCC
Confidence 9 4 578999999999999987653 357888886
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin |
| >cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus) | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.9e-13 Score=130.68 Aligned_cols=85 Identities=21% Similarity=0.430 Sum_probs=71.9
Q ss_pred CcEEEEEEEEeecCC------CCCcEEEEEECC-----eEEeecCccCCC-CCeEeeEEEEEEe-cCCCceEEEEEEecC
Q 001987 3 STRLYVYVLQGQDLL------AKDSYVKVQIGK-----HKSKSRILKNNS-NPVWNEEFVFRVH-NIDDEELVVSVFQHN 69 (985)
Q Consensus 3 ~~~L~V~V~~Ar~L~------~~DPyv~v~l~~-----~~~kT~v~~~t~-nP~wnE~f~f~v~-~~~~~~L~~~V~D~d 69 (985)
.++|.|.|++|+||+ ..||||+|++.. .++||+++++|+ ||.|||+|.|+|+ +.....|.|+|||++
T Consensus 13 ~~rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~~~KkKT~v~k~t~~~P~fNEsF~Fdv~~~~~~v~l~v~v~d~~ 92 (135)
T cd08692 13 NSRIQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGLLYKKKTRLVKSSNGQVKWGETMIFPVTQQEHGIQFLIKLYSRS 92 (135)
T ss_pred CCeEEEEEEEccCCCcccCCCCCCcEEEEEEEECCCcceeecCccEECCCCCceecceEEEeCCchhheeEEEEEEEeCC
Confidence 578999999999998 458899999952 368999999995 6999999999997 334567888899998
Q ss_pred CCCCCCCCCCCeeEEEEEeCccc
Q 001987 70 DDSGLFGSSGELMGRVRVPVSSI 92 (985)
Q Consensus 70 ~~~~~~~~~d~~lG~~~i~L~~l 92 (985)
+ .+++++||++.++....
T Consensus 93 ---~--~~~n~~IG~v~lG~~~~ 110 (135)
T cd08692 93 ---S--VRRKHFLGQVWISSDSS 110 (135)
T ss_pred ---C--CcCCceEEEEEECCccC
Confidence 4 67999999999998764
|
Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho |
| >KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.48 E-value=4.6e-14 Score=157.03 Aligned_cols=124 Identities=23% Similarity=0.382 Sum_probs=104.0
Q ss_pred CCCeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCEEEEeeeccCCCCCeEeEEEEEEeecCCCCEEEEEEEecCCCC--
Q 001987 533 GDGWVLTVALVEGVNLASSEMTGLSDPYVVFTCNGKTRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGPF-- 610 (985)
Q Consensus 533 ~~~g~L~V~v~~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~~~~~tlnP~Wne~f~f~v~~~~~~~L~v~V~D~d~~~-- 610 (985)
.|...++++|+.|++|.++|..|++||||.+.++..+++|+++...+||+|||.|.|. .......+++.|||.|..+
T Consensus 292 kwsakitltvlcaqgl~akdktg~sdpyvt~qv~ktkrrtrti~~~lnpvw~ekfhfe-chnstdrikvrvwded~dlks 370 (1283)
T KOG1011|consen 292 KWSAKITLTVLCAQGLIAKDKTGKSDPYVTAQVGKTKRRTRTIHQELNPVWNEKFHFE-CHNSTDRIKVRVWDEDNDLKS 370 (1283)
T ss_pred ccceeeEEeeeecccceecccCCCCCCcEEEeecccchhhHhhhhccchhhhhheeee-ecCCCceeEEEEecCcccHHH
Confidence 3566899999999999999999999999999999999999999999999999999999 4566789999999998522
Q ss_pred --------CCCCccceEEEEeeccccCcccceEEEcccc-ccCCcceeEEEEEeeecC
Q 001987 611 --------DQATSLGHAEINFLKHTSTELADMWVSLEGK-LAQSAQSKVHLRIFLENN 659 (985)
Q Consensus 611 --------~~dd~lG~~~i~l~~l~~~~~~~~w~~L~~~-~~~~~~g~l~l~~~ls~~ 659 (985)
..|||+|++.|.+..+.. ..+.||.|+.. .+.+.+|.|.|.+.....
T Consensus 371 klrqkl~resddflgqtvievrtlsg--emdvwynlekrtdksavsgairlhisveik 426 (1283)
T KOG1011|consen 371 KLRQKLTRESDDFLGQTVIEVRTLSG--EMDVWYNLEKRTDKSAVSGAIRLHISVEIK 426 (1283)
T ss_pred HHHHHhhhcccccccceeEEEEeccc--chhhhcchhhccchhhccceEEEEEEEEEc
Confidence 468999999999998654 47899999863 344556766666654433
|
|
| >PLN03200 cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=1e-13 Score=178.74 Aligned_cols=121 Identities=17% Similarity=0.236 Sum_probs=101.0
Q ss_pred CCCeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCE-EEEeeeccCCCCCeEeEEEEEEeecCC-CCEEEEEEEecCCCC
Q 001987 533 GDGWVLTVALVEGVNLASSEMTGLSDPYVVFTCNGK-TRTSSVQLQTCDPQWHDILEFDAMEEP-PSVLDVEVFDFDGPF 610 (985)
Q Consensus 533 ~~~g~L~V~v~~a~~L~~~d~~g~~DPyv~v~~~~~-~~kT~~~~~tlnP~Wne~f~f~v~~~~-~~~L~v~V~D~d~~~ 610 (985)
.-.|.|+|+|++|+||. +..|.+||||++.+|++ +.||++++++.||+|||+|+|.+..++ +..|+|+|||+|. |
T Consensus 1977 ~~~G~L~V~V~~a~nl~--~~~~~sdPyv~l~~g~~~~~kTkvvk~~~nP~Wne~f~~~~~~p~~~~~l~iev~d~d~-f 2053 (2102)
T PLN03200 1977 CLPGSLTVTIKRGNNLK--QSMGNTNAFCKLTLGNGPPRQTKVVSHSSSPEWKEGFTWAFDSPPKGQKLHISCKSKNT-F 2053 (2102)
T ss_pred hCCcceEEEEeeccccc--cccCCCCCeEEEEECCCCcccccccCCCCCCCcccceeeeecCCCCCCceEEEEEecCc-c
Confidence 45789999999999998 44799999999999955 889999999999999999998854443 3579999999998 8
Q ss_pred CCCCccceEEEEeeccccCcccceEEEccccccCCcc-eeEEEEEeee
Q 001987 611 DQATSLGHAEINFLKHTSTELADMWVSLEGKLAQSAQ-SKVHLRIFLE 657 (985)
Q Consensus 611 ~~dd~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~-g~l~l~~~ls 657 (985)
++ |.+|+++|++.++..++....||+|.+++.+.++ ..|++.+-++
T Consensus 2054 ~k-d~~G~~~i~l~~vv~~~~~~~~~~L~~~~~k~G~~~~~~~e~~w~ 2100 (2102)
T PLN03200 2054 GK-SSLGKVTIQIDRVVMEGTYSGEYSLNPESNKDGSSRTLEIEFQWS 2100 (2102)
T ss_pred CC-CCCceEEEEHHHHhcCceeeeeeecCcccccCCCcceEEEEEEec
Confidence 55 5999999999999999999999999975443332 3388777443
|
|
| >cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins | Back alignment and domain information |
|---|
Probab=99.45 E-value=3.1e-13 Score=131.43 Aligned_cols=90 Identities=24% Similarity=0.424 Sum_probs=78.1
Q ss_pred CcEEEEEEEEeecCC------CCCcEEEEEEC-------CeEEeecCccCCCCCeEeeEEEEEEec----CCCceEEEEE
Q 001987 3 STRLYVYVLQGQDLL------AKDSYVKVQIG-------KHKSKSRILKNNSNPVWNEEFVFRVHN----IDDEELVVSV 65 (985)
Q Consensus 3 ~~~L~V~V~~Ar~L~------~~DPyv~v~l~-------~~~~kT~v~~~t~nP~wnE~f~f~v~~----~~~~~L~~~V 65 (985)
.+.|+|+|++|++|+ .+||||+|++. ..++||+++++|+||.|||+|.|.+.. .....|.|+|
T Consensus 15 ~~~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~~~~~~~~l~~~V 94 (133)
T cd04009 15 EQSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFNVPPEQCSVEGALLLFTV 94 (133)
T ss_pred CCEEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCCcCccccccccccCcCCCCCccCCEEEEEechhhcccCCCEEEEEE
Confidence 368999999999998 68999999996 246899999999999999999999853 2457899999
Q ss_pred EecCCCCCCCCCCCCeeEEEEEeCccccccCC
Q 001987 66 FQHNDDSGLFGSSGELMGRVRVPVSSIAAEDN 97 (985)
Q Consensus 66 ~D~d~~~~~~~~~d~~lG~~~i~L~~l~~~~~ 97 (985)
||++ + .+++++||++.++|.++..-++
T Consensus 95 ~d~d---~--~~~d~~iG~~~i~l~~l~~~~~ 121 (133)
T cd04009 95 KDYD---L--LGSNDFEGEAFLPLNDIPGVED 121 (133)
T ss_pred EecC---C--CCCCcEeEEEEEeHHHCCcccc
Confidence 9999 4 5789999999999999986543
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s |
| >cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain | Back alignment and domain information |
|---|
Probab=99.45 E-value=3.4e-13 Score=131.32 Aligned_cols=96 Identities=22% Similarity=0.450 Sum_probs=80.8
Q ss_pred CcEEEEEEEEeecCC------CCCcEEEEEECC-----eEEeecCccCCCCCeEeeEEEEEEe--cCCCceEEEEEEecC
Q 001987 3 STRLYVYVLQGQDLL------AKDSYVKVQIGK-----HKSKSRILKNNSNPVWNEEFVFRVH--NIDDEELVVSVFQHN 69 (985)
Q Consensus 3 ~~~L~V~V~~Ar~L~------~~DPyv~v~l~~-----~~~kT~v~~~t~nP~wnE~f~f~v~--~~~~~~L~~~V~D~d 69 (985)
.+.|.|+|++|+||+ .+||||+|++.+ .+++|+++++++||.|||+|.|.++ ......|.|+|||+|
T Consensus 12 ~~~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~l~~~~l~~~V~d~d 91 (133)
T cd08384 12 RRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYDIKHSDLAKKTLEITVWDKD 91 (133)
T ss_pred CCEEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcCCCccCCceeeeEeccCCCCcccEEEEECCHHHhCCCEEEEEEEeCC
Confidence 579999999999998 689999999963 3589999999999999999999986 335678999999999
Q ss_pred CCCCCCCCCCCeeEEEEEeCccccccCCCCCCCeEEEee
Q 001987 70 DDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLE 108 (985)
Q Consensus 70 ~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~ 108 (985)
. .+++++||++.+++.... .....|+.+.
T Consensus 92 ---~--~~~~~~lG~~~i~l~~~~-----~~~~~W~~~l 120 (133)
T cd08384 92 ---I--GKSNDYIGGLQLGINAKG-----ERLRHWLDCL 120 (133)
T ss_pred ---C--CCCccEEEEEEEecCCCC-----chHHHHHHHH
Confidence 4 568999999999997522 1246788775
|
Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai |
| >cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Probab=99.45 E-value=8e-13 Score=125.98 Aligned_cols=95 Identities=21% Similarity=0.333 Sum_probs=83.5
Q ss_pred cEEEEEEEEeecCC------CCCcEEEEEECC-eEEeecCccCCCCCeEeeEEEEEEecCCCceEEEEEEecCCCCCCCC
Q 001987 4 TRLYVYVLQGQDLL------AKDSYVKVQIGK-HKSKSRILKNNSNPVWNEEFVFRVHNIDDEELVVSVFQHNDDSGLFG 76 (985)
Q Consensus 4 ~~L~V~V~~Ar~L~------~~DPyv~v~l~~-~~~kT~v~~~t~nP~wnE~f~f~v~~~~~~~L~~~V~D~d~~~~~~~ 76 (985)
+.|+|+|++|++|+ .+||||+|++++ ..++|++++++.||.|||+|.|.+. ...+.|.|+|||++ . .
T Consensus 1 g~L~V~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~-~~~~~L~v~v~d~~---~--~ 74 (120)
T cd04045 1 GVLRLHIRKANDLKNLEGVGKIDPYVRVLVNGIVKGRTVTISNTLNPVWDEVLYVPVT-SPNQKITLEVMDYE---K--V 74 (120)
T ss_pred CeEEEEEEeeECCCCccCCCCcCCEEEEEECCEEeeceeEECCCcCCccCceEEEEec-CCCCEEEEEEEECC---C--C
Confidence 57999999999998 789999999976 4599999999999999999999884 44579999999999 4 5
Q ss_pred CCCCeeEEEEEeCccccccCCCCCCCeEEEee
Q 001987 77 SSGELMGRVRVPVSSIAAEDNHMLPPTWFSLE 108 (985)
Q Consensus 77 ~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~ 108 (985)
+++++||++.++|.++... ....||.|.
T Consensus 75 ~~d~~IG~~~~~l~~l~~~----~~~~~~~~~ 102 (120)
T cd04045 75 GKDRSLGSVEINVSDLIKK----NEDGKYVEY 102 (120)
T ss_pred CCCCeeeEEEEeHHHhhCC----CCCceEEec
Confidence 7899999999999999865 357899887
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. |
| >cd04047 C2B_Copine C2 domain second repeat in Copine | Back alignment and domain information |
|---|
Probab=99.44 E-value=4.5e-13 Score=125.82 Aligned_cols=88 Identities=18% Similarity=0.334 Sum_probs=75.5
Q ss_pred EEEEEeecCCCCCCCCCCCcEEEEEECC------EEEEeeeccCCCCCeEeEEEEEEeec----CCCCEEEEEEEecCCC
Q 001987 540 VALVEGVNLASSEMTGLSDPYVVFTCNG------KTRTSSVQLQTCDPQWHDILEFDAME----EPPSVLDVEVFDFDGP 609 (985)
Q Consensus 540 V~v~~a~~L~~~d~~g~~DPyv~v~~~~------~~~kT~~~~~tlnP~Wne~f~f~v~~----~~~~~L~v~V~D~d~~ 609 (985)
+-.++|++|+..|..|.+||||++++.+ ..++|+++++++||+|| +|.|.+.. +....|.|+|||+|.
T Consensus 4 ~~~i~a~~L~~~d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d~d~- 81 (110)
T cd04047 4 ELQFSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDYDS- 81 (110)
T ss_pred EEEEEeCCCCCCCCCCCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEHHHhcCCCcCCEEEEEEEEeCC-
Confidence 4457999999999999999999999854 35899999999999999 78887422 236799999999998
Q ss_pred CCCCCccceEEEEeeccccC
Q 001987 610 FDQATSLGHAEINFLKHTST 629 (985)
Q Consensus 610 ~~~dd~lG~~~i~l~~l~~~ 629 (985)
+++|++||++.+++.++...
T Consensus 82 ~~~d~~iG~~~~~l~~l~~~ 101 (110)
T cd04047 82 SGKHDLIGEFETTLDELLKS 101 (110)
T ss_pred CCCCcEEEEEEEEHHHHhcC
Confidence 79999999999999998743
|
There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom |
| >cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1 | Back alignment and domain information |
|---|
Probab=99.44 E-value=4.9e-13 Score=130.71 Aligned_cols=96 Identities=28% Similarity=0.478 Sum_probs=78.5
Q ss_pred CcEEEEEEEEeecCC------CCCcEEEEEECC-----eEEeecCccCCCCCeEeeEEEEEEe--cCCCceEEEEEEecC
Q 001987 3 STRLYVYVLQGQDLL------AKDSYVKVQIGK-----HKSKSRILKNNSNPVWNEEFVFRVH--NIDDEELVVSVFQHN 69 (985)
Q Consensus 3 ~~~L~V~V~~Ar~L~------~~DPyv~v~l~~-----~~~kT~v~~~t~nP~wnE~f~f~v~--~~~~~~L~~~V~D~d 69 (985)
.++|.|+|++|++|+ .+||||+|++++ .+++|+++++++||.|||+|.|.++ ......|.|+|||++
T Consensus 14 ~~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~v~d~~ 93 (136)
T cd08402 14 AGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFEVPFEQIQKVHLIVTVLDYD 93 (136)
T ss_pred CCeEEEEEEEeeCCCcccCCCCCCCeEEEEEEECCcccceeeccceeCCCCCcccceEEEECCHHHhCCCEEEEEEEeCC
Confidence 578999999999998 689999999952 3578999999999999999999985 233468999999999
Q ss_pred CCCCCCCCCCCeeEEEEEeCccccccCCCCCCCeEEEee
Q 001987 70 DDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLE 108 (985)
Q Consensus 70 ~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~ 108 (985)
+ .+++++||++.+++..... ....|+.+.
T Consensus 94 ---~--~~~~~~iG~~~i~~~~~~~-----~~~~W~~~~ 122 (136)
T cd08402 94 ---R--IGKNDPIGKVVLGCNATGA-----ELRHWSDML 122 (136)
T ss_pred ---C--CCCCceeEEEEECCccCCh-----HHHHHHHHH
Confidence 4 5789999999999976422 134566554
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: |
| >cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4 | Back alignment and domain information |
|---|
Probab=99.43 E-value=6.9e-13 Score=129.60 Aligned_cols=96 Identities=29% Similarity=0.461 Sum_probs=80.7
Q ss_pred CcEEEEEEEEeecCC------CCCcEEEEEECC-----eEEeecCccCCCCCeEeeEEEEEEe--cCCCceEEEEEEecC
Q 001987 3 STRLYVYVLQGQDLL------AKDSYVKVQIGK-----HKSKSRILKNNSNPVWNEEFVFRVH--NIDDEELVVSVFQHN 69 (985)
Q Consensus 3 ~~~L~V~V~~Ar~L~------~~DPyv~v~l~~-----~~~kT~v~~~t~nP~wnE~f~f~v~--~~~~~~L~~~V~D~d 69 (985)
.+.|.|+|++|+||+ .+||||+|++.+ .+.+|+++++++||.|||+|.|.++ ......|.|+|||+|
T Consensus 14 ~~~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~k~t~nP~w~e~F~f~v~~~~~~~~~l~~~v~d~d 93 (136)
T cd08404 14 TNRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFDIPSEELEDISVEFLVLDSD 93 (136)
T ss_pred CCeEEEEEEEeeCCCccccCCCCCeEEEEEEEcCCceeeeEcCccccCCCCCccCceEEEECCHHHhCCCEEEEEEEECC
Confidence 578999999999998 689999999953 2578999999999999999999985 235678999999999
Q ss_pred CCCCCCCCCCCeeEEEEEeCccccccCCCCCCCeEEEee
Q 001987 70 DDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLE 108 (985)
Q Consensus 70 ~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~ 108 (985)
+ .+++++||++.+++.. ... ....|+.|.
T Consensus 94 ---~--~~~~~~iG~~~~~~~~-~~~----~~~~w~~l~ 122 (136)
T cd08404 94 ---R--VTKNEVIGRLVLGPKA-SGS----GGHHWKEVC 122 (136)
T ss_pred ---C--CCCCccEEEEEECCcC-CCc----hHHHHHHHH
Confidence 4 5789999999999988 221 256788876
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s |
| >cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17 | Back alignment and domain information |
|---|
Probab=99.43 E-value=7.3e-13 Score=129.13 Aligned_cols=97 Identities=28% Similarity=0.542 Sum_probs=77.2
Q ss_pred CcEEEEEEEEeecCC------CCCcEEEEEECC-----eEEeecCccCCCCCeEeeEEEEEEe--cCCCceEEEEEEecC
Q 001987 3 STRLYVYVLQGQDLL------AKDSYVKVQIGK-----HKSKSRILKNNSNPVWNEEFVFRVH--NIDDEELVVSVFQHN 69 (985)
Q Consensus 3 ~~~L~V~V~~Ar~L~------~~DPyv~v~l~~-----~~~kT~v~~~t~nP~wnE~f~f~v~--~~~~~~L~~~V~D~d 69 (985)
.+.|.|+|++|+||+ .+||||+|++.+ .+++|+++++|+||.|||+|.|.++ ......|.|+|||+|
T Consensus 13 ~~~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~F~f~i~~~~l~~~~l~~~V~d~d 92 (135)
T cd08410 13 AGRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNESFSFKVPQEELENVSLVFTVYGHN 92 (135)
T ss_pred CCeEEEEEEEecCCCcccCCCCCCeEEEEEEEcCCcccceEcCccccCCCCCccceeEEEeCCHHHhCCCEEEEEEEeCC
Confidence 478999999999998 689999999842 3479999999999999999999985 344557999999999
Q ss_pred CCCCCCCCCCCeeEEEEEeCccccccCCCCCCCeEEEee
Q 001987 70 DDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLE 108 (985)
Q Consensus 70 ~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~ 108 (985)
. .+++++||++.+........ ....|+.|.
T Consensus 93 ---~--~~~~~~iG~~~l~~~~~~~~----~~~~W~~l~ 122 (135)
T cd08410 93 ---V--KSSNDFIGRIVIGQYSSGPS----ETNHWRRML 122 (135)
T ss_pred ---C--CCCCcEEEEEEEcCccCCch----HHHHHHHHH
Confidence 3 57999999998754333221 135577665
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta- |
| >cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma | Back alignment and domain information |
|---|
Probab=99.43 E-value=6.4e-13 Score=128.99 Aligned_cols=100 Identities=28% Similarity=0.537 Sum_probs=85.7
Q ss_pred CcEEEEEEEEeecCC------CCCcEEEEEECC-----eEEeecCccCCCCCeEeeEEEEEEec-CCCceEEEEEEecCC
Q 001987 3 STRLYVYVLQGQDLL------AKDSYVKVQIGK-----HKSKSRILKNNSNPVWNEEFVFRVHN-IDDEELVVSVFQHND 70 (985)
Q Consensus 3 ~~~L~V~V~~Ar~L~------~~DPyv~v~l~~-----~~~kT~v~~~t~nP~wnE~f~f~v~~-~~~~~L~~~V~D~d~ 70 (985)
.+.|+|+|++|+||+ .+||||+|.+.+ ..++|++++++.||.|||+|.|.+.. ...+.|.|+|||++
T Consensus 12 ~~~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~wne~f~~~~~~~~~~~~l~v~v~d~~- 90 (131)
T cd04026 12 DNKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFDLKPADKDRRLSIEVWDWD- 90 (131)
T ss_pred CCEEEEEEEEeeCCCCcCCCCCCCCcEEEEEEcCCCCCceecceeecCCCCCCccceEEEeCCchhcCCEEEEEEEECC-
Confidence 468999999999998 689999999963 56999999999999999999999753 24678999999998
Q ss_pred CCCCCCCCCCeeEEEEEeCccccccCCCCCCCeEEEeecCC
Q 001987 71 DSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPK 111 (985)
Q Consensus 71 ~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~~~~ 111 (985)
. .+++++||++.++|.++... ....||+|.+..
T Consensus 91 --~--~~~~~~iG~~~~~l~~l~~~----~~~~w~~L~~~~ 123 (131)
T cd04026 91 --R--TTRNDFMGSLSFGVSELIKM----PVDGWYKLLNQE 123 (131)
T ss_pred --C--CCCcceeEEEEEeHHHhCcC----ccCceEECcCcc
Confidence 4 56899999999999999753 467899998443
|
A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd |
| >cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7 | Back alignment and domain information |
|---|
Probab=99.42 E-value=8.6e-13 Score=128.95 Aligned_cols=85 Identities=29% Similarity=0.527 Sum_probs=74.2
Q ss_pred CcEEEEEEEEeecCC------CCCcEEEEEECC-----eEEeecCccCCCCCeEeeEEEEEEe--cCCCceEEEEEEecC
Q 001987 3 STRLYVYVLQGQDLL------AKDSYVKVQIGK-----HKSKSRILKNNSNPVWNEEFVFRVH--NIDDEELVVSVFQHN 69 (985)
Q Consensus 3 ~~~L~V~V~~Ar~L~------~~DPyv~v~l~~-----~~~kT~v~~~t~nP~wnE~f~f~v~--~~~~~~L~~~V~D~d 69 (985)
.++|.|+|++|+||+ .+||||+|++.. .+.+|+++++++||.|||+|.|.++ ......|.|+|||++
T Consensus 14 ~~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~~kT~v~~~t~~P~wne~F~f~i~~~~~~~~~l~~~v~d~~ 93 (136)
T cd08405 14 ANRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIFNIPLERLRETTLIITVMDKD 93 (136)
T ss_pred CCeEEEEEEEeeCCCccccCCCCCceEEEEEEeCCCccccccCcceeCCCCCcccceEEEeCCHHHhCCCEEEEEEEECC
Confidence 578999999999998 689999999842 3478999999999999999999985 334678999999999
Q ss_pred CCCCCCCCCCCeeEEEEEeCccc
Q 001987 70 DDSGLFGSSGELMGRVRVPVSSI 92 (985)
Q Consensus 70 ~~~~~~~~~d~~lG~~~i~L~~l 92 (985)
+ .+++++||++.+++.+.
T Consensus 94 ---~--~~~~~~lG~~~i~~~~~ 111 (136)
T cd08405 94 ---R--LSRNDLIGKIYLGWKSG 111 (136)
T ss_pred ---C--CCCCcEeEEEEECCccC
Confidence 4 57899999999999876
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves |
| >cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein | Back alignment and domain information |
|---|
Probab=99.42 E-value=7.1e-13 Score=123.22 Aligned_cols=83 Identities=22% Similarity=0.498 Sum_probs=69.8
Q ss_pred EEEEEEEeecCC-CCCcEEEEEECC-----eEEeecCccCCCCCeEeeEEEEEEecCCCceEEEEEEecCCC----CCCC
Q 001987 6 LYVYVLQGQDLL-AKDSYVKVQIGK-----HKSKSRILKNNSNPVWNEEFVFRVHNIDDEELVVSVFQHNDD----SGLF 75 (985)
Q Consensus 6 L~V~V~~Ar~L~-~~DPyv~v~l~~-----~~~kT~v~~~t~nP~wnE~f~f~v~~~~~~~L~~~V~D~d~~----~~~~ 75 (985)
|.|+|++|+||+ .+||||++.+.+ .+++|+++++|+||+|||+|.|.++ ..+.|++.|||++.+ ..
T Consensus 1 L~V~V~~A~~L~~~sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~l~--~s~~L~~~v~d~~~~~~~~d~-- 76 (118)
T cd08686 1 LNVIVHSAQGFKQSANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIELE--GSQTLRILCYEKCYSKVKLDG-- 76 (118)
T ss_pred CEEEEEeCCCCCCCCCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEEeC--CCCEEEEEEEEcccccccccc--
Confidence 689999999999 899999999963 3599999999999999999999993 588999999998310 02
Q ss_pred CCCCCeeEEEEEeCccc
Q 001987 76 GSSGELMGRVRVPVSSI 92 (985)
Q Consensus 76 ~~~d~~lG~~~i~L~~l 92 (985)
.++|++||++.+.|..-
T Consensus 77 ~~~d~~~G~g~i~Ld~~ 93 (118)
T cd08686 77 EGTDAIMGKGQIQLDPQ 93 (118)
T ss_pred cCcccEEEEEEEEECHH
Confidence 46899999988876543
|
The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr |
| >cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins | Back alignment and domain information |
|---|
Probab=99.42 E-value=7.6e-13 Score=130.56 Aligned_cols=92 Identities=27% Similarity=0.569 Sum_probs=79.2
Q ss_pred CcEEEEEEEEeecCC------CCCcEEEEEECCe-----------------------------EEeecCccCCCCCeEee
Q 001987 3 STRLYVYVLQGQDLL------AKDSYVKVQIGKH-----------------------------KSKSRILKNNSNPVWNE 47 (985)
Q Consensus 3 ~~~L~V~V~~Ar~L~------~~DPyv~v~l~~~-----------------------------~~kT~v~~~t~nP~wnE 47 (985)
.+.|.|+|++|+||. .+||||+|.+.+. .++|+++++|+||.|||
T Consensus 27 ~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~WnE 106 (153)
T cd08676 27 IFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQTLNPVWNE 106 (153)
T ss_pred eEEEEEEEEeccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecCCCCCcccc
Confidence 468999999999997 7999999999632 37899999999999999
Q ss_pred EEEEEEecCCCceEEEEEEecCCCCCCCCCCCCeeEEEEEeCccccccCCCCCCCeEEEe
Q 001987 48 EFVFRVHNIDDEELVVSVFQHNDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSL 107 (985)
Q Consensus 48 ~f~f~v~~~~~~~L~~~V~D~d~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L 107 (985)
+|.|.+..+....|.|+|||++ +++||++.+++.++... ....||+|
T Consensus 107 ~F~f~v~~~~~~~L~i~V~D~d---------d~~IG~v~i~l~~l~~~----~~d~W~~L 153 (153)
T cd08676 107 TFRFEVEDVSNDQLHLDIWDHD---------DDFLGCVNIPLKDLPSC----GLDSWFKL 153 (153)
T ss_pred EEEEEeccCCCCEEEEEEEecC---------CCeEEEEEEEHHHhCCC----CCCCeEeC
Confidence 9999996556789999999876 37999999999999832 25889986
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy |
| >PLN03008 Phospholipase D delta | Back alignment and domain information |
|---|
Probab=99.42 E-value=1e-12 Score=155.81 Aligned_cols=103 Identities=23% Similarity=0.440 Sum_probs=86.3
Q ss_pred CCcEEEEEECCe-EEeecCccCCCCCeEeeEEEEEEecCCCceEEEEEEecCCCCCCCCCCCCeeEEEEEeCccccccCC
Q 001987 19 KDSYVKVQIGKH-KSKSRILKNNSNPVWNEEFVFRVHNIDDEELVVSVFQHNDDSGLFGSSGELMGRVRVPVSSIAAEDN 97 (985)
Q Consensus 19 ~DPyv~v~l~~~-~~kT~v~~~t~nP~wnE~f~f~v~~~~~~~L~~~V~D~d~~~~~~~~~d~~lG~~~i~L~~l~~~~~ 97 (985)
+||||+|.++++ ..||+++++++||+|||+|.|.+.. ....|.|+|||.| . + ++++||++.|||.++..+.
T Consensus 77 SDPYV~I~Lg~~rv~RTrVi~n~~NPvWNE~F~f~vah-~~s~L~f~VkD~D---~--~-gaD~IG~a~IPL~~L~~Ge- 148 (868)
T PLN03008 77 SDPYVTVVVPQATLARTRVLKNSQEPLWDEKFNISIAH-PFAYLEFQVKDDD---V--F-GAQIIGTAKIPVRDIASGE- 148 (868)
T ss_pred CCceEEEEECCcceeeEEeCCCCCCCCcceeEEEEecC-CCceEEEEEEcCC---c--c-CCceeEEEEEEHHHcCCCC-
Confidence 499999999876 4799999999999999999999954 3568999999999 5 3 4699999999999998763
Q ss_pred CCCCCeEEEeecCCCCCCCCccccEEEEEEEEEecC
Q 001987 98 HMLPPTWFSLETPKTRKFTNKDCGKILLTISLNGKG 133 (985)
Q Consensus 98 ~~~~~~W~~L~~~~~~~~~~~~~G~I~lsl~~~~~~ 133 (985)
....|++|.+. .+++ .+..|+|+|++.|.+-.
T Consensus 149 --~vd~Wl~Ll~~-~~kp-~k~~~kl~v~lqf~pv~ 180 (868)
T PLN03008 149 --RISGWFPVLGA-SGKP-PKAETAIFIDMKFTPFD 180 (868)
T ss_pred --ceEEEEEcccc-CCCC-CCCCcEEEEEEEEEEcc
Confidence 46799999844 3343 56778999999998853
|
|
| >KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.41 E-value=6.7e-13 Score=151.16 Aligned_cols=163 Identities=20% Similarity=0.273 Sum_probs=129.6
Q ss_pred CCcEEEEEEEEeecCC------CCCcEEEEEECCeE-EeecCccCCCCCeEeeEEEEEEecCCCceEEEEEEecCCCCCC
Q 001987 2 VSTRLYVYVLQGQDLL------AKDSYVKVQIGKHK-SKSRILKNNSNPVWNEEFVFRVHNIDDEELVVSVFQHNDDSGL 74 (985)
Q Consensus 2 ~~~~L~V~V~~Ar~L~------~~DPyv~v~l~~~~-~kT~v~~~t~nP~wnE~f~f~v~~~~~~~L~~~V~D~d~~~~~ 74 (985)
+...|+|+|.+|+||+ .+||||.|.+.++. .||.++.+++.|.|.|+|.|.+ +..-+.|.|.|||.|
T Consensus 3 ~~~sl~vki~E~knL~~~~~~g~~D~yC~v~lD~E~v~RT~tv~ksL~PF~gEe~~~~i-P~~F~~l~fYv~D~d----- 76 (800)
T KOG2059|consen 3 VEQSLKVKIGEAKNLPSYGPSGMRDCYCTVNLDQEEVCRTATVEKSLCPFFGEEFYFEI-PRTFRYLSFYVWDRD----- 76 (800)
T ss_pred cccceeEEEeecccCCCCCCCCCcCcceEEeecchhhhhhhhhhhhcCCccccceEEec-CcceeeEEEEEeccc-----
Confidence 4568999999999999 78999999999765 9999999999999999999999 677789999999999
Q ss_pred CCCCCCeeEEEEEeCccccccCCCCCCCeEEEeecCCCCCCCCccccEEEEEEEEEecCC--eeeEEEEeeeccCCCCCC
Q 001987 75 FGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTNKDCGKILLTISLNGKGH--NLSSNRLLYLHSNVSSNE 152 (985)
Q Consensus 75 ~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~~G~I~lsl~~~~~~~--~l~v~v~~~~a~~L~~~d 152 (985)
+++|+.||.+.|.=.++...+ -...|+.|. +.+.. ....|+|+|.+.+.+... .+...++. ++.+-+.+
T Consensus 77 -~~~D~~IGKvai~re~l~~~~---~~d~W~~L~-~VD~d--sEVQG~v~l~l~~~e~~~~~~~~c~~L~--~r~~~P~~ 147 (800)
T KOG2059|consen 77 -LKRDDIIGKVAIKREDLHMYP---GKDTWFSLQ-PVDPD--SEVQGKVHLELALTEAIQSSGLVCHVLK--TRQGLPII 147 (800)
T ss_pred -cccccccceeeeeHHHHhhCC---CCccceecc-ccCCC--hhhceeEEEEEEeccccCCCcchhhhhh--hcccCcee
Confidence 689999999999877777653 367899999 65543 668999999999987543 33334443 55555544
Q ss_pred CCCCCCCeEEEEEcCCCCCCccccccccc
Q 001987 153 SKELEDPCVLSHDVSCSKAPCLDVTEGNH 181 (985)
Q Consensus 153 ~~g~sdP~vkv~l~~~~~~~~~k~~~~~~ 181 (985)
. +..|||+++......+-.. ++|+.++
T Consensus 148 ~-~~~dp~~~v~~~g~~~~~~-~~T~~~k 174 (800)
T KOG2059|consen 148 N-GQCDPFARVTLCGPSKLKE-KKTKVKK 174 (800)
T ss_pred C-CCCCcceEEeecccchhhc-cccceee
Confidence 4 4499999998877766544 5555544
|
|
| >cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.2e-12 Score=125.54 Aligned_cols=85 Identities=25% Similarity=0.423 Sum_probs=75.9
Q ss_pred EEEEEEEEeecCC------CCCcEEEEEECCeE--EeecCccCCCCCeEeeEEEEEEecCCCceEEEEEEecCCCCCCCC
Q 001987 5 RLYVYVLQGQDLL------AKDSYVKVQIGKHK--SKSRILKNNSNPVWNEEFVFRVHNIDDEELVVSVFQHNDDSGLFG 76 (985)
Q Consensus 5 ~L~V~V~~Ar~L~------~~DPyv~v~l~~~~--~kT~v~~~t~nP~wnE~f~f~v~~~~~~~L~~~V~D~d~~~~~~~ 76 (985)
.|+|+|++|++|+ .+||||+|++++.. .+|+++++++||.|||+|.|.+..+....|.|+|||+| . .
T Consensus 1 ~lrV~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~~kT~~v~~t~nP~Wne~f~f~~~~~~~~~L~~~V~d~d---~--~ 75 (124)
T cd04037 1 LVRVYVVRARNLQPKDPNGKSDPYLKIKLGKKKINDRDNYIPNTLNPVFGKMFELEATLPGNSILKISVMDYD---L--L 75 (124)
T ss_pred CEEEEEEECcCCCCCCCCCCCCcEEEEEECCeeccceeeEEECCCCCccceEEEEEecCCCCCEEEEEEEECC---C--C
Confidence 3799999999998 79999999998765 67888999999999999999986566789999999999 4 5
Q ss_pred CCCCeeEEEEEeCccccc
Q 001987 77 SSGELMGRVRVPVSSIAA 94 (985)
Q Consensus 77 ~~d~~lG~~~i~L~~l~~ 94 (985)
+++++||++.++|.+...
T Consensus 76 ~~dd~iG~~~i~l~~~~~ 93 (124)
T cd04037 76 GSDDLIGETVIDLEDRFF 93 (124)
T ss_pred CCCceeEEEEEeeccccc
Confidence 799999999999998764
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15 | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.2e-12 Score=127.73 Aligned_cols=86 Identities=33% Similarity=0.496 Sum_probs=74.2
Q ss_pred CcEEEEEEEEeecCC-----CCCcEEEEEECC-----eEEeecCccCCCCCeEeeEEEEEEe--cCCCceEEEEEEecCC
Q 001987 3 STRLYVYVLQGQDLL-----AKDSYVKVQIGK-----HKSKSRILKNNSNPVWNEEFVFRVH--NIDDEELVVSVFQHND 70 (985)
Q Consensus 3 ~~~L~V~V~~Ar~L~-----~~DPyv~v~l~~-----~~~kT~v~~~t~nP~wnE~f~f~v~--~~~~~~L~~~V~D~d~ 70 (985)
.++|.|+|++|+||+ .+||||+|++.+ .+++|+++++++||.|||+|.|.++ +.....|.|+|||.+
T Consensus 14 ~~~L~V~V~~a~nL~~~~~~~~d~yVkv~l~~~~~~~~~~kT~v~~~~~nP~fnE~F~f~i~~~~l~~~~L~~~V~~~~- 92 (137)
T cd08409 14 LNRLTVVVLRARGLRQLDHAHTSVYVKVSLMIHNKVVKTKKTEVVDGAASPSFNESFSFKVTSRQLDTASLSLSVMQSG- 92 (137)
T ss_pred CCeEEEEEEEecCCCcccCCCCCeEEEEEEEECCEEeeeeecccEeCCCCCcccceEEEECCHHHhCccEEEEEEEeCC-
Confidence 478999999999998 589999999864 3579999999999999999999986 455689999999999
Q ss_pred CCCCCCCCCCeeEEEEEeCcccc
Q 001987 71 DSGLFGSSGELMGRVRVPVSSIA 93 (985)
Q Consensus 71 ~~~~~~~~d~~lG~~~i~L~~l~ 93 (985)
. .+++++||++.++.....
T Consensus 93 --~--~~~~~~lG~v~ig~~~~~ 111 (137)
T cd08409 93 --G--VRKSKLLGRVVLGPFMYA 111 (137)
T ss_pred --C--CCCcceEEEEEECCcccC
Confidence 4 578999999999865443
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id |
| >cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10 | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.4e-12 Score=127.15 Aligned_cols=97 Identities=30% Similarity=0.471 Sum_probs=78.6
Q ss_pred CCcEEEEEEEEeecCC------CCCcEEEEEECC-----eEEeecCccCCCCCeEeeEEEEEEe--cCCCceEEEEEEec
Q 001987 2 VSTRLYVYVLQGQDLL------AKDSYVKVQIGK-----HKSKSRILKNNSNPVWNEEFVFRVH--NIDDEELVVSVFQH 68 (985)
Q Consensus 2 ~~~~L~V~V~~Ar~L~------~~DPyv~v~l~~-----~~~kT~v~~~t~nP~wnE~f~f~v~--~~~~~~L~~~V~D~ 68 (985)
.++.|+|+|++|++|+ .+||||+|++.. .+++|+++++++||.|||+|.|.++ ......|.|+|||+
T Consensus 12 ~~~~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~~~~~~l~~~v~d~ 91 (134)
T cd08403 12 TAGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFDVPPENVDNVSLIIAVVDY 91 (134)
T ss_pred CCCEEEEEEEEeeCCCccccCCCCCceEEEEEEeCCcccceecCCcccCCCCCcccceEEEECCHHHhCCCEEEEEEEEC
Confidence 3679999999999998 689999999952 3579999999999999999999985 23446799999999
Q ss_pred CCCCCCCCCCCCeeEEEEEeCccccccCCCCCCCeEEEee
Q 001987 69 NDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLE 108 (985)
Q Consensus 69 d~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~ 108 (985)
+ + .+++++||++.+++..... ....|+.+.
T Consensus 92 ~---~--~~~~~~IG~~~l~~~~~~~-----~~~~w~~~~ 121 (134)
T cd08403 92 D---R--VGHNELIGVCRVGPNADGQ-----GREHWNEML 121 (134)
T ss_pred C---C--CCCCceeEEEEECCCCCCc-----hHHHHHHHH
Confidence 9 4 6789999999998773321 245676664
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind |
| >cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC) | Back alignment and domain information |
|---|
Probab=99.38 E-value=5.5e-12 Score=121.81 Aligned_cols=111 Identities=29% Similarity=0.508 Sum_probs=90.5
Q ss_pred cEEEEEEEEeecCC--------CCCcEEEEEEC------CeEEeecCccCCC-CCeEeeEEEEEEecCCCceEEEEEEec
Q 001987 4 TRLYVYVLQGQDLL--------AKDSYVKVQIG------KHKSKSRILKNNS-NPVWNEEFVFRVHNIDDEELVVSVFQH 68 (985)
Q Consensus 4 ~~L~V~V~~Ar~L~--------~~DPyv~v~l~------~~~~kT~v~~~t~-nP~wnE~f~f~v~~~~~~~L~~~V~D~ 68 (985)
++|+|+|++|+||+ .+||||++++. ..+.+|+++.++. ||.|||+|.|.+..+....|.|+|||.
T Consensus 2 ~~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~~~~l~~~V~d~ 81 (128)
T cd00275 2 LTLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVPELAFLRFVVYDE 81 (128)
T ss_pred eEEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCCCeEEEEEEEEeC
Confidence 68999999999997 46999999994 4568999988765 999999999998655567899999999
Q ss_pred CCCCCCCCCCCCeeEEEEEeCccccccCCCCCCCeEEEeecCCCCCCCCccccEEEEEEEE
Q 001987 69 NDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTNKDCGKILLTISL 129 (985)
Q Consensus 69 d~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~~G~I~lsl~~ 129 (985)
+ . . ++++||++.++|.++.. ...|++|.++.. + ....|.|.+.+++
T Consensus 82 ~---~--~-~~~~iG~~~~~l~~l~~------g~~~~~l~~~~~-~--~~~~~~l~v~~~~ 127 (128)
T cd00275 82 D---S--G-DDDFLGQACLPLDSLRQ------GYRHVPLLDSKG-E--PLELSTLFVHIDI 127 (128)
T ss_pred C---C--C-CCcEeEEEEEEhHHhcC------ceEEEEecCCCC-C--CCcceeEEEEEEE
Confidence 9 4 3 89999999999999853 347899974432 2 3457899888765
|
PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking |
| >cd04048 C2A_Copine C2 domain first repeat in Copine | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.3e-12 Score=124.69 Aligned_cols=95 Identities=19% Similarity=0.282 Sum_probs=78.0
Q ss_pred EEEeecCC------CCCcEEEEEECCe-------EEeecCccCCCCCeEeeEEEEEEecCCCceEEEEEEecCCCCCCCC
Q 001987 10 VLQGQDLL------AKDSYVKVQIGKH-------KSKSRILKNNSNPVWNEEFVFRVHNIDDEELVVSVFQHNDDSGLFG 76 (985)
Q Consensus 10 V~~Ar~L~------~~DPyv~v~l~~~-------~~kT~v~~~t~nP~wnE~f~f~v~~~~~~~L~~~V~D~d~~~~~~~ 76 (985)
.++|++|+ .+||||+|++.+. .++|+++++++||.|||+|.|.+.....+.|.|+|||+|..... .
T Consensus 6 ~i~a~~L~~~d~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~~~~~~l~~~V~d~d~~~~~-~ 84 (120)
T cd04048 6 SISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFEEVQKLRFEVYDVDSKSKD-L 84 (120)
T ss_pred EEEccCCCCCCCCCCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEEeEeeeEEEEEEEEecCCcCC-C
Confidence 47899998 6899999999764 38999999999999999999987555667899999999920000 4
Q ss_pred CCCCeeEEEEEeCccccccCCCCCCCeEEEee
Q 001987 77 SSGELMGRVRVPVSSIAAEDNHMLPPTWFSLE 108 (985)
Q Consensus 77 ~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~ 108 (985)
+++++||++.+++.++..++ ....|++|.
T Consensus 85 ~~~d~iG~~~i~l~~l~~~~---~~~~~~~l~ 113 (120)
T cd04048 85 SDHDFLGEAECTLGEIVSSP---GQKLTLPLK 113 (120)
T ss_pred CCCcEEEEEEEEHHHHhcCC---CcEEEEEcc
Confidence 78999999999999998653 255788884
|
There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma |
| >PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.1e-12 Score=114.65 Aligned_cols=82 Identities=32% Similarity=0.553 Sum_probs=75.8
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECC---EEEEeeeccCCCCCeEeEEEEEEeecCCCCEEEEEEEecCCCCCCCC
Q 001987 538 LTVALVEGVNLASSEMTGLSDPYVVFTCNG---KTRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGPFDQAT 614 (985)
Q Consensus 538 L~V~v~~a~~L~~~d~~g~~DPyv~v~~~~---~~~kT~~~~~tlnP~Wne~f~f~v~~~~~~~L~v~V~D~d~~~~~dd 614 (985)
|+|+|++|+||+..+..+..||||++++++ ..++|++++++.+|.|||+|.|.+.......|.|+|||++. +++|+
T Consensus 1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~~~V~~~~~-~~~~~ 79 (85)
T PF00168_consen 1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSESTKYKTKVKKNTSNPVWNEEFEFPLDDPDLDSLSFEVWDKDS-FGKDE 79 (85)
T ss_dssp EEEEEEEEESSSSSSTTSSBEEEEEEEEETTTCEEEEECCBSSBSSEEEEEEEEEEESHGCGTEEEEEEEEETS-SSSEE
T ss_pred CEEEEEEEECCCCcccCCcccccceeecceeeeeeeeeeeeeccccceeeeeeeeeeecccccceEEEEEECCC-CCCCC
Confidence 789999999999989889999999999987 78999999999999999999999777777779999999998 78899
Q ss_pred ccceEE
Q 001987 615 SLGHAE 620 (985)
Q Consensus 615 ~lG~~~ 620 (985)
+||++.
T Consensus 80 ~iG~~~ 85 (85)
T PF00168_consen 80 LIGEVK 85 (85)
T ss_dssp EEEEEE
T ss_pred EEEEEC
Confidence 999974
|
C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A .... |
| >KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.37 E-value=2e-13 Score=146.94 Aligned_cols=97 Identities=28% Similarity=0.554 Sum_probs=86.5
Q ss_pred CcEEEEEEEEeecCC------CCCcEEEEEECC-----eEEeecCccCCCCCeEeeEEEEEEe-cCCCceEEEEEEecCC
Q 001987 3 STRLYVYVLQGQDLL------AKDSYVKVQIGK-----HKSKSRILKNNSNPVWNEEFVFRVH-NIDDEELVVSVFQHND 70 (985)
Q Consensus 3 ~~~L~V~V~~Ar~L~------~~DPyv~v~l~~-----~~~kT~v~~~t~nP~wnE~f~f~v~-~~~~~~L~~~V~D~d~ 70 (985)
...|+|+|.+|+||. .|||||++.+-+ .+++|++++.++||+|||+|.|.+. ...++.|.|+|||||
T Consensus 179 ~~~l~v~i~ea~NLiPMDpNGlSDPYvk~kliPD~~~~sKqKTkTik~~LNP~wNEtftf~Lkp~DkdrRlsiEvWDWD- 257 (683)
T KOG0696|consen 179 RDVLTVTIKEAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIKATLNPVWNETFTFKLKPSDKDRRLSIEVWDWD- 257 (683)
T ss_pred CceEEEEehhhccccccCCCCCCCcceeEEeccCCcchhhhhhhhhhhhcCccccceeEEecccccccceeEEEEeccc-
Confidence 357999999999997 899999999953 3589999999999999999999974 567799999999999
Q ss_pred CCCCCCCCCCeeEEEEEeCccccccCCCCCCCeEEEee
Q 001987 71 DSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLE 108 (985)
Q Consensus 71 ~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~ 108 (985)
+ .+++||||...+.++++... +...||.|-
T Consensus 258 --r--TsRNDFMGslSFgisEl~K~----p~~GWyKlL 287 (683)
T KOG0696|consen 258 --R--TSRNDFMGSLSFGISELQKA----PVDGWYKLL 287 (683)
T ss_pred --c--cccccccceecccHHHHhhc----chhhHHHHh
Confidence 5 68999999999999999876 477899987
|
|
| >cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin | Back alignment and domain information |
|---|
Probab=99.33 E-value=7.5e-12 Score=121.93 Aligned_cols=97 Identities=31% Similarity=0.469 Sum_probs=82.3
Q ss_pred CCcEEEEEEEEeecCC------CCCcEEEEEECCe-----EEeecCccCCCCCeEeeEEEEEEecC--CCceEEEEEEec
Q 001987 2 VSTRLYVYVLQGQDLL------AKDSYVKVQIGKH-----KSKSRILKNNSNPVWNEEFVFRVHNI--DDEELVVSVFQH 68 (985)
Q Consensus 2 ~~~~L~V~V~~Ar~L~------~~DPyv~v~l~~~-----~~kT~v~~~t~nP~wnE~f~f~v~~~--~~~~L~~~V~D~ 68 (985)
..++|.|+|++|+||+ .+||||++++.+. +++|++++++.||.|||+|.|.+... ....|.|+|||.
T Consensus 12 ~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~~~~P~wne~f~f~i~~~~l~~~~l~~~v~d~ 91 (134)
T cd00276 12 TAERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDVPAEQLEEVSLVITVVDK 91 (134)
T ss_pred CCCEEEEEEEEeeCCCCccCCCCCCcEEEEEEEcCCeEeeeecCcceecCCCCeeeeeEEEECCHHHhCCcEEEEEEEec
Confidence 3579999999999998 6899999999752 57999999999999999999998532 368899999999
Q ss_pred CCCCCCCCCCCCeeEEEEEeCccccccCCCCCCCeEEEee
Q 001987 69 NDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLE 108 (985)
Q Consensus 69 d~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~ 108 (985)
+ + .+++++||++.++|.+ . + .....|++|.
T Consensus 92 ~---~--~~~~~~lG~~~i~l~~-~-~---~~~~~W~~l~ 121 (134)
T cd00276 92 D---S--VGRNEVIGQVVLGPDS-G-G---EELEHWNEML 121 (134)
T ss_pred C---C--CCCCceeEEEEECCCC-C-C---cHHHHHHHHH
Confidence 9 4 4689999999999999 2 2 2357899887
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin |
| >cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.5e-11 Score=116.40 Aligned_cols=87 Identities=20% Similarity=0.459 Sum_probs=75.1
Q ss_pred CcEEEEEEEEeecCC------CCCcEEEEEECC-----eEEeecCccCCCCCeEeeEEEEE-Ee--cCCCceEEEEEEec
Q 001987 3 STRLYVYVLQGQDLL------AKDSYVKVQIGK-----HKSKSRILKNNSNPVWNEEFVFR-VH--NIDDEELVVSVFQH 68 (985)
Q Consensus 3 ~~~L~V~V~~Ar~L~------~~DPyv~v~l~~-----~~~kT~v~~~t~nP~wnE~f~f~-v~--~~~~~~L~~~V~D~ 68 (985)
.+.|.|+|++|++|+ .+||||++++.+ ..++|+++++++||.|||+|.|. +. +.....|.|+|||+
T Consensus 14 ~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~Wne~f~f~~~~~~~~~~~~l~~~v~d~ 93 (123)
T cd04035 14 NSALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYGITEEDIQRKTLRLLVLDE 93 (123)
T ss_pred CCEEEEEEEEeeCCCCCCCCCCCCceEEEEEecCCCCCCceeeeeecCCCCCCccceEEEcCCCHHHhCCCEEEEEEEEc
Confidence 468999999999998 689999999852 36899999999999999999996 42 23457899999999
Q ss_pred CCCCCCCCCCCCeeEEEEEeCcccccc
Q 001987 69 NDDSGLFGSSGELMGRVRVPVSSIAAE 95 (985)
Q Consensus 69 d~~~~~~~~~d~~lG~~~i~L~~l~~~ 95 (985)
+ + . ++++||++.++|+++...
T Consensus 94 ~---~--~-~~~~iG~~~i~l~~l~~~ 114 (123)
T cd04035 94 D---R--F-GNDFLGETRIPLKKLKPN 114 (123)
T ss_pred C---C--c-CCeeEEEEEEEcccCCCC
Confidence 9 4 4 789999999999999865
|
Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain |
| >PLN03200 cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.4e-11 Score=159.45 Aligned_cols=114 Identities=18% Similarity=0.428 Sum_probs=96.0
Q ss_pred CcEEEEEEEEeecCC----CCCcEEEEEECCe-EEeecCccCCCCCeEeeEEEEEEec-CCCceEEEEEEecCCCCCCCC
Q 001987 3 STRLYVYVLQGQDLL----AKDSYVKVQIGKH-KSKSRILKNNSNPVWNEEFVFRVHN-IDDEELVVSVFQHNDDSGLFG 76 (985)
Q Consensus 3 ~~~L~V~V~~Ar~L~----~~DPyv~v~l~~~-~~kT~v~~~t~nP~wnE~f~f~v~~-~~~~~L~~~V~D~d~~~~~~~ 76 (985)
.|.|+|+|++|+||. .+||||++.++++ +.||++++++.||+|||+|.|.+.+ +....|.|+|||+| .|
T Consensus 1979 ~G~L~V~V~~a~nl~~~~~~sdPyv~l~~g~~~~~kTkvvk~~~nP~Wne~f~~~~~~p~~~~~l~iev~d~d---~f-- 2053 (2102)
T PLN03200 1979 PGSLTVTIKRGNNLKQSMGNTNAFCKLTLGNGPPRQTKVVSHSSSPEWKEGFTWAFDSPPKGQKLHISCKSKN---TF-- 2053 (2102)
T ss_pred CcceEEEEeeccccccccCCCCCeEEEEECCCCcccccccCCCCCCCcccceeeeecCCCCCCceEEEEEecC---cc--
Confidence 578999999999999 7899999999966 7899999999999999999988864 44577999999999 53
Q ss_pred CCCCeeEEEEEeCccccccCCCCCCCeEEEeecCCCCCCCCccccE---EEEEEEEEe
Q 001987 77 SSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTNKDCGK---ILLTISLNG 131 (985)
Q Consensus 77 ~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~~G~---I~lsl~~~~ 131 (985)
.++.||++.|+|.++..++ ....||+|. ++ ++..|+ |.+.+.|.+
T Consensus 2054 -~kd~~G~~~i~l~~vv~~~---~~~~~~~L~-~~-----~~k~G~~~~~~~e~~w~~ 2101 (2102)
T PLN03200 2054 -GKSSLGKVTIQIDRVVMEG---TYSGEYSLN-PE-----SNKDGSSRTLEIEFQWSN 2101 (2102)
T ss_pred -CCCCCceEEEEHHHHhcCc---eeeeeeecC-cc-----cccCCCcceEEEEEEecC
Confidence 4559999999999999763 467899998 32 234577 999998853
|
|
| >KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.25 E-value=8.5e-12 Score=139.31 Aligned_cols=121 Identities=33% Similarity=0.604 Sum_probs=101.9
Q ss_pred CcEEEEEEEEeecCC------CCCcEEEEEECCeEEeecCccCCCCCeEeeEEEEEEecCCCceEEEEEEecCCCC----
Q 001987 3 STRLYVYVLQGQDLL------AKDSYVKVQIGKHKSKSRILKNNSNPVWNEEFVFRVHNIDDEELVVSVFQHNDDS---- 72 (985)
Q Consensus 3 ~~~L~V~V~~Ar~L~------~~DPyv~v~l~~~~~kT~v~~~t~nP~wnE~f~f~v~~~~~~~L~~~V~D~d~~~---- 72 (985)
+.++.++|+.|++|. ++||||.+++++.+.||+++...+||+|||.|.|+. ......+++.|||.|.|-
T Consensus 294 sakitltvlcaqgl~akdktg~sdpyvt~qv~ktkrrtrti~~~lnpvw~ekfhfec-hnstdrikvrvwded~dlkskl 372 (1283)
T KOG1011|consen 294 SAKITLTVLCAQGLIAKDKTGKSDPYVTAQVGKTKRRTRTIHQELNPVWNEKFHFEC-HNSTDRIKVRVWDEDNDLKSKL 372 (1283)
T ss_pred ceeeEEeeeecccceecccCCCCCCcEEEeecccchhhHhhhhccchhhhhheeeee-cCCCceeEEEEecCcccHHHHH
Confidence 567899999999998 899999999999999999999999999999999998 577889999999999553
Q ss_pred --CCCCCCCCeeEEEEEeCccccccCCCCCCCeEEEeecCCCCCCCCccccEEEEEEEEEec
Q 001987 73 --GLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTNKDCGKILLTISLNGK 132 (985)
Q Consensus 73 --~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~~G~I~lsl~~~~~ 132 (985)
++....|||+|+..|.+..+..+ -..||+|+ +++.+ ....|-|+|.+...-.
T Consensus 373 rqkl~resddflgqtvievrtlsge-----mdvwynle-krtdk--savsgairlhisveik 426 (1283)
T KOG1011|consen 373 RQKLTRESDDFLGQTVIEVRTLSGE-----MDVWYNLE-KRTDK--SAVSGAIRLHISVEIK 426 (1283)
T ss_pred HHHhhhcccccccceeEEEEecccc-----hhhhcchh-hccch--hhccceEEEEEEEEEc
Confidence 11124789999999999988754 56899999 66655 5678988887776543
|
|
| >KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.3e-11 Score=140.95 Aligned_cols=120 Identities=23% Similarity=0.291 Sum_probs=106.5
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECC-EEEEeeeccCCCCCeEeEEEEEEeecCCCCEEEEEEEecCCCCCCCCc
Q 001987 537 VLTVALVEGVNLASSEMTGLSDPYVVFTCNG-KTRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGPFDQATS 615 (985)
Q Consensus 537 ~L~V~v~~a~~L~~~d~~g~~DPyv~v~~~~-~~~kT~~~~~tlnP~Wne~f~f~v~~~~~~~L~v~V~D~d~~~~~dd~ 615 (985)
.|.|+|.+|+||++.+..|.+||||.|.++. ...+|.++.++|.|.|.|+|.|. .+..-..|.|-|||.| +++|+.
T Consensus 6 sl~vki~E~knL~~~~~~g~~D~yC~v~lD~E~v~RT~tv~ksL~PF~gEe~~~~-iP~~F~~l~fYv~D~d--~~~D~~ 82 (800)
T KOG2059|consen 6 SLKVKIGEAKNLPSYGPSGMRDCYCTVNLDQEEVCRTATVEKSLCPFFGEEFYFE-IPRTFRYLSFYVWDRD--LKRDDI 82 (800)
T ss_pred ceeEEEeecccCCCCCCCCCcCcceEEeecchhhhhhhhhhhhcCCccccceEEe-cCcceeeEEEEEeccc--cccccc
Confidence 5899999999999999999999999999985 57899999999999999999999 5665678999999999 599999
Q ss_pred cceEEEEeeccccCcccceEEEcccc-ccCCcceeEEEEEeeecC
Q 001987 616 LGHAEINFLKHTSTELADMWVSLEGK-LAQSAQSKVHLRIFLENN 659 (985)
Q Consensus 616 lG~~~i~l~~l~~~~~~~~w~~L~~~-~~~~~~g~l~l~~~ls~~ 659 (985)
||.+-|.=.++......+.|+.|..- .....+|++||++-+...
T Consensus 83 IGKvai~re~l~~~~~~d~W~~L~~VD~dsEVQG~v~l~l~~~e~ 127 (800)
T KOG2059|consen 83 IGKVAIKREDLHMYPGKDTWFSLQPVDPDSEVQGKVHLELALTEA 127 (800)
T ss_pred cceeeeeHHHHhhCCCCccceeccccCCChhhceeEEEEEEeccc
Confidence 99999999998887789999999873 445679999999965443
|
|
| >cd00030 C2 C2 domain | Back alignment and domain information |
|---|
Probab=99.22 E-value=6.3e-11 Score=107.77 Aligned_cols=100 Identities=32% Similarity=0.604 Sum_probs=88.5
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECC-EEEEeeeccCCCCCeEeEEEEEEeecCCCCEEEEEEEecCCCCCCCCcc
Q 001987 538 LTVALVEGVNLASSEMTGLSDPYVVFTCNG-KTRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGPFDQATSL 616 (985)
Q Consensus 538 L~V~v~~a~~L~~~d~~g~~DPyv~v~~~~-~~~kT~~~~~tlnP~Wne~f~f~v~~~~~~~L~v~V~D~d~~~~~dd~l 616 (985)
|.|+|++|++|......+..||||.+.+.+ ...+|+++.++.||.||+.|.|.+.......|.|+|||++. .+.+.+|
T Consensus 1 l~v~i~~~~~l~~~~~~~~~~~~v~v~~~~~~~~~T~~~~~~~~P~w~~~~~~~~~~~~~~~l~i~v~~~~~-~~~~~~i 79 (102)
T cd00030 1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLDPESDTLTVEVWDKDR-FSKDDFL 79 (102)
T ss_pred CEEEEEeeeCCCCcCCCCCCCcEEEEEeccCceEecceeCCCCCCcccceEEEEccCCCCCEEEEEEEecCC-CCCCcee
Confidence 478999999999877778999999999998 88999999999999999999999654467799999999998 5778999
Q ss_pred ceEEEEeeccc-cCcccceEEEc
Q 001987 617 GHAEINFLKHT-STELADMWVSL 638 (985)
Q Consensus 617 G~~~i~l~~l~-~~~~~~~w~~L 638 (985)
|++.+++..+. .......|++|
T Consensus 80 g~~~~~l~~l~~~~~~~~~~~~l 102 (102)
T cd00030 80 GEVEIPLSELLDSGKEGELWLPL 102 (102)
T ss_pred EEEEEeHHHhhhcCCcCcceecC
Confidence 99999999988 66777888875
|
The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. |
| >cd04047 C2B_Copine C2 domain second repeat in Copine | Back alignment and domain information |
|---|
Probab=99.22 E-value=4.2e-11 Score=112.45 Aligned_cols=83 Identities=17% Similarity=0.421 Sum_probs=69.1
Q ss_pred EEEEEEeecCC------CCCcEEEEEECCe------EEeecCccCCCCCeEeeEEEEEEec----CCCceEEEEEEecCC
Q 001987 7 YVYVLQGQDLL------AKDSYVKVQIGKH------KSKSRILKNNSNPVWNEEFVFRVHN----IDDEELVVSVFQHND 70 (985)
Q Consensus 7 ~V~V~~Ar~L~------~~DPyv~v~l~~~------~~kT~v~~~t~nP~wnE~f~f~v~~----~~~~~L~~~V~D~d~ 70 (985)
.+-.++|++|+ .+||||+|++.++ .++|+++++++||.|| +|.|.+.. .....|.|+|||++
T Consensus 3 ~~~~i~a~~L~~~d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d~d- 80 (110)
T cd04047 3 VELQFSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDYD- 80 (110)
T ss_pred EEEEEEeCCCCCCCCCCCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEHHHhcCCCcCCEEEEEEEEeC-
Confidence 34567899998 7999999998653 4899999999999999 67777532 22689999999999
Q ss_pred CCCCCCCCCCeeEEEEEeCcccccc
Q 001987 71 DSGLFGSSGELMGRVRVPVSSIAAE 95 (985)
Q Consensus 71 ~~~~~~~~d~~lG~~~i~L~~l~~~ 95 (985)
+ .++|++||++.+++.++...
T Consensus 81 --~--~~~d~~iG~~~~~l~~l~~~ 101 (110)
T cd04047 81 --S--SGKHDLIGEFETTLDELLKS 101 (110)
T ss_pred --C--CCCCcEEEEEEEEHHHHhcC
Confidence 4 57999999999999999854
|
There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom |
| >PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking | Back alignment and domain information |
|---|
Probab=99.19 E-value=8.5e-11 Score=104.21 Aligned_cols=76 Identities=37% Similarity=0.630 Sum_probs=68.1
Q ss_pred EEEEEEEeecCC------CCCcEEEEEECC---eEEeecCccCCCCCeEeeEEEEEEecCCCceEEEEEEecCCCCCCCC
Q 001987 6 LYVYVLQGQDLL------AKDSYVKVQIGK---HKSKSRILKNNSNPVWNEEFVFRVHNIDDEELVVSVFQHNDDSGLFG 76 (985)
Q Consensus 6 L~V~V~~Ar~L~------~~DPyv~v~l~~---~~~kT~v~~~t~nP~wnE~f~f~v~~~~~~~L~~~V~D~d~~~~~~~ 76 (985)
|+|+|++|+||+ ..||||++.+.+ ...+|++++++.+|.|+|+|.|.+.......|.|+|||.+ . .
T Consensus 1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~~~V~~~~---~--~ 75 (85)
T PF00168_consen 1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSESTKYKTKVKKNTSNPVWNEEFEFPLDDPDLDSLSFEVWDKD---S--F 75 (85)
T ss_dssp EEEEEEEEESSSSSSTTSSBEEEEEEEEETTTCEEEEECCBSSBSSEEEEEEEEEEESHGCGTEEEEEEEEET---S--S
T ss_pred CEEEEEEEECCCCcccCCcccccceeecceeeeeeeeeeeeeccccceeeeeeeeeeecccccceEEEEEECC---C--C
Confidence 789999999999 679999999987 6699999999999999999999987666677999999999 3 4
Q ss_pred CCCCeeEEEE
Q 001987 77 SSGELMGRVR 86 (985)
Q Consensus 77 ~~d~~lG~~~ 86 (985)
+++++||++.
T Consensus 76 ~~~~~iG~~~ 85 (85)
T PF00168_consen 76 GKDELIGEVK 85 (85)
T ss_dssp SSEEEEEEEE
T ss_pred CCCCEEEEEC
Confidence 6799999974
|
C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A .... |
| >cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.3e-10 Score=111.20 Aligned_cols=92 Identities=23% Similarity=0.290 Sum_probs=78.0
Q ss_pred EEEEEEEeecCCCCC--CCCC--CCcEEEEEECC---EEEEeeeccCCCC--CeEeEEEEEEeecC--------------
Q 001987 538 LTVALVEGVNLASSE--MTGL--SDPYVVFTCNG---KTRTSSVQLQTCD--PQWHDILEFDAMEE-------------- 594 (985)
Q Consensus 538 L~V~v~~a~~L~~~d--~~g~--~DPyv~v~~~~---~~~kT~~~~~tln--P~Wne~f~f~v~~~-------------- 594 (985)
|+|.|.+|+|++..+ ..|. +||||+..+.+ .+.+|.+..+++| |.||+.|.|.+.-.
T Consensus 2 LRViIw~~~~v~~~~~~~~g~~~sD~yVK~~L~~~~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~~~~~~~~~~~ 81 (133)
T cd08374 2 LRVIVWNTRDVLNDDTNITGEKMSDIYVKGWLDGLEEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEKKIVVIKKEHF 81 (133)
T ss_pred EEEEEEECcCCcccccccCCccccCeEEEEEEccCcccccccceEEecCCCCcEEeEEEEEeeecCCccceeEEEeeccc
Confidence 799999999966544 3664 99999999964 5689999999999 99999999986331
Q ss_pred ---------CCCEEEEEEEecCCCCCCCCccceEEEEeeccccCc
Q 001987 595 ---------PPSVLDVEVFDFDGPFDQATSLGHAEINFLKHTSTE 630 (985)
Q Consensus 595 ---------~~~~L~v~V~D~d~~~~~dd~lG~~~i~l~~l~~~~ 630 (985)
....|.++|||.|. +++||+||+++++|..+..+.
T Consensus 82 ~~~~~~e~~~~~~L~lqvwD~D~-~s~dd~iG~~~l~l~~l~~~~ 125 (133)
T cd08374 82 WSLDETEYKIPPKLTLQVWDNDK-FSPDDFLGSLELDLSILPRPA 125 (133)
T ss_pred cccCcceEecCcEEEEEEEECcc-cCCCCcceEEEEEhhhccccc
Confidence 14589999999999 899999999999999877654
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >PLN02223 phosphoinositide phospholipase C | Back alignment and domain information |
|---|
Probab=99.17 E-value=2.1e-10 Score=131.61 Aligned_cols=118 Identities=16% Similarity=0.195 Sum_probs=94.4
Q ss_pred CeEEEEEEEEeecCCC-----CCCCCCCCcEEEEEECC-----EEEEeeeccCCCCCeEeEEEEEEeecCCCCEEEEEEE
Q 001987 535 GWVLTVALVEGVNLAS-----SEMTGLSDPYVVFTCNG-----KTRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVF 604 (985)
Q Consensus 535 ~g~L~V~v~~a~~L~~-----~d~~g~~DPyv~v~~~~-----~~~kT~~~~~tlnP~Wne~f~f~v~~~~~~~L~v~V~ 604 (985)
...|+|+|+.|++++. .+.....||||+|.+.| ...+|++..++.||+|||+|+|.+..+.-..|+|+|+
T Consensus 408 ~~~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvWne~F~F~i~~PELAlLrf~V~ 487 (537)
T PLN02223 408 VKILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWGEEFTFPLTYPDLALISFEVY 487 (537)
T ss_pred ceEEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCcceeEEEeCCCCcCceecceeEEEEEccCceEEEEEEE
Confidence 3579999999998752 12235689999999964 3567888889999999999999987777789999999
Q ss_pred ecCCCCCCCCccceEEEEeeccccCcccceEEEccccccCC-cceeEEEEEee
Q 001987 605 DFDGPFDQATSLGHAEINFLKHTSTELADMWVSLEGKLAQS-AQSKVHLRIFL 656 (985)
Q Consensus 605 D~d~~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~-~~g~l~l~~~l 656 (985)
|+|. .+.|+|+|++.+|+..+..|. .+++|.++.+.. ..-+|.+++.+
T Consensus 488 D~D~-~~~ddfiGQ~~LPv~~Lr~Gy---R~VpL~~~~g~~l~~~~Ll~~f~~ 536 (537)
T PLN02223 488 DYEV-STADAFCGQTCLPVSELIEGI---RAVPLYDERGKACSSTMLLTRFKW 536 (537)
T ss_pred ecCC-CCCCcEEEEEecchHHhcCCc---eeEeccCCCcCCCCCceEEEEEEe
Confidence 9998 688999999999999998876 567887755444 34466666643
|
|
| >smart00239 C2 Protein kinase C conserved region 2 (CalB) | Back alignment and domain information |
|---|
Probab=99.15 E-value=2e-10 Score=104.81 Aligned_cols=94 Identities=28% Similarity=0.491 Sum_probs=81.7
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECCE---EEEeeeccCCCCCeEeEEEEEEeecCCCCEEEEEEEecCCCCCCCC
Q 001987 538 LTVALVEGVNLASSEMTGLSDPYVVFTCNGK---TRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGPFDQAT 614 (985)
Q Consensus 538 L~V~v~~a~~L~~~d~~g~~DPyv~v~~~~~---~~kT~~~~~tlnP~Wne~f~f~v~~~~~~~L~v~V~D~d~~~~~dd 614 (985)
|.|.|++|++|...+..+..+|||++++.+. ..+|+++.++.||.|||+|.|.+.......|.|+|||.+. .+.+.
T Consensus 2 l~i~i~~~~~l~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~i~v~~~~~-~~~~~ 80 (101)
T smart00239 2 LTVKIISARNLPKKDKKGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPPPELAELEIEVYDKDR-FGRDD 80 (101)
T ss_pred eEEEEEEeeCCCCCCCCCCCCceEEEEEeCCccceEeeeEecCCCCCcccceEEEEecCcccCEEEEEEEecCC-ccCCc
Confidence 6899999999998876678999999999864 8999999999999999999999644448899999999997 56789
Q ss_pred ccceEEEEeeccccCccc
Q 001987 615 SLGHAEINFLKHTSTELA 632 (985)
Q Consensus 615 ~lG~~~i~l~~l~~~~~~ 632 (985)
++|.+.+++.++..+...
T Consensus 81 ~~G~~~~~l~~~~~~~~~ 98 (101)
T smart00239 81 FIGQVTIPLSDLLLGGRH 98 (101)
T ss_pred eeEEEEEEHHHcccCccc
Confidence 999999999988766543
|
Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles. |
| >KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.10 E-value=3.6e-11 Score=126.69 Aligned_cols=171 Identities=18% Similarity=0.249 Sum_probs=137.1
Q ss_pred CcEEEEEEEEeecCC------CCCcEEEEEECC-----eEEeecCccCCCCCeEeeEEEEE-Ee--cCCCceEEEEEEec
Q 001987 3 STRLYVYVLQGQDLL------AKDSYVKVQIGK-----HKSKSRILKNNSNPVWNEEFVFR-VH--NIDDEELVVSVFQH 68 (985)
Q Consensus 3 ~~~L~V~V~~Ar~L~------~~DPyv~v~l~~-----~~~kT~v~~~t~nP~wnE~f~f~-v~--~~~~~~L~~~V~D~ 68 (985)
+..+.+++..|++|. ..|||+++.++. .+.+|++..+++||.|+|+.... +. +.....+++.|.|.
T Consensus 92 ~~~~~~tl~~a~~lk~~~~~~~~d~~~~~~llpga~kl~slr~~t~~n~lN~~w~etev~~~i~~~~~~~K~~Rk~vcdn 171 (362)
T KOG1013|consen 92 SRMLDTTLDRAKGLKPMDINGLADPYVKLHLLPGAGKLNSLRTKTTRNTLNPEWNETEVYEGITDDDTHLKVLRKVVCDN 171 (362)
T ss_pred hhhcceeechhcccchhhhhhhcchHHhhhcccchhhhhhhhHHhhccCcCcceeccceecccccchhhhhhhheeeccC
Confidence 467899999999987 789999999984 34788999999999999998877 32 45567888999999
Q ss_pred CCCCCCCCCCCCeeEEEEEeCccccccCCCCCCCeEEEeec--CCCCCCCCccccEEEEEEEEEecCCeeeEEEEeeecc
Q 001987 69 NDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLET--PKTRKFTNKDCGKILLTISLNGKGHNLSSNRLLYLHS 146 (985)
Q Consensus 69 d~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~~--~~~~~~~~~~~G~I~lsl~~~~~~~~l~v~v~~~~a~ 146 (985)
+ + +...+++|+..+++..+...+... ...|+.-.- .+........+|+|.+++.|......+.+.++. ..
T Consensus 172 ~---~--~~~~~sqGq~r~~lkKl~p~q~k~-f~~cl~~~lp~~rad~~~~E~rg~i~isl~~~s~~~~l~vt~iR--c~ 243 (362)
T KOG1013|consen 172 D---K--KTHNESQGQSRVSLKKLKPLQRKS-FNICLEKSLPSERADRDEDEERGAILISLAYSSTTPGLIVTIIR--CS 243 (362)
T ss_pred c---c--cccccCcccchhhhhccChhhcch-hhhhhhccCCcccccccchhhccceeeeeccCcCCCceEEEEEE--ee
Confidence 8 5 568899999999999998775422 223433221 222222346899999999998888888888886 57
Q ss_pred CCCCCCCCCCCCCeEEEEEcCCCCCCccccccccc
Q 001987 147 NVSSNESKELEDPCVLSHDVSCSKAPCLDVTEGNH 181 (985)
Q Consensus 147 ~L~~~d~~g~sdP~vkv~l~~~~~~~~~k~~~~~~ 181 (985)
+|..+|.+|.+||||+.++.+...+..+++|+..+
T Consensus 244 ~l~ssDsng~sDpyvS~~l~pdv~~~fkkKt~~~K 278 (362)
T KOG1013|consen 244 HLASSDSNGYSDPYVSQRLSPDVGKKFKKKTQQKK 278 (362)
T ss_pred eeeccccCCCCCccceeecCCCcchhhcccCcchh
Confidence 89999999999999999999999998888887775
|
|
| >PLN02952 phosphoinositide phospholipase C | Back alignment and domain information |
|---|
Probab=99.09 E-value=7.5e-10 Score=129.98 Aligned_cols=118 Identities=15% Similarity=0.197 Sum_probs=93.4
Q ss_pred CeEEEEEEEEeecCCCC------CCCCCCCcEEEEEECC-----EEEEeeeccCCCCCeEeEEEEEEeecCCCCEEEEEE
Q 001987 535 GWVLTVALVEGVNLASS------EMTGLSDPYVVFTCNG-----KTRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEV 603 (985)
Q Consensus 535 ~g~L~V~v~~a~~L~~~------d~~g~~DPyv~v~~~~-----~~~kT~~~~~tlnP~Wne~f~f~v~~~~~~~L~v~V 603 (985)
...|+|+|+.|.+|+.. +.....||||+|.+.| .+.+|+++.++.||+|||+|.|.+..+.-..|+|.|
T Consensus 469 ~~~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWnE~F~F~i~~PELAllrf~V 548 (599)
T PLN02952 469 KKTLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADNAKKKTKIIEDNWYPAWNEEFSFPLTVPELALLRIEV 548 (599)
T ss_pred cceEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCCCcceeeeeccCCCCcccCCeeEEEEEcCCccEEEEEE
Confidence 35799999999997532 1123359999999954 567999999999999999999998776677899999
Q ss_pred EecCCCCCCCCccceEEEEeeccccCcccceEEEccccccC-CcceeEEEEEee
Q 001987 604 FDFDGPFDQATSLGHAEINFLKHTSTELADMWVSLEGKLAQ-SAQSKVHLRIFL 656 (985)
Q Consensus 604 ~D~d~~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~-~~~g~l~l~~~l 656 (985)
+|+|. .+.+|++|++.|||..+..+. .|++|.+..+. ...-.|.+++.+
T Consensus 549 ~D~D~-~~~ddfiGq~~lPv~~Lr~Gy---R~VpL~~~~G~~l~~a~Llv~f~~ 598 (599)
T PLN02952 549 REYDM-SEKDDFGGQTCLPVSELRPGI---RSVPLHDKKGEKLKNVRLLMRFIF 598 (599)
T ss_pred EecCC-CCCCCeEEEEEcchhHhcCCc---eeEeCcCCCCCCCCCEEEEEEEEe
Confidence 99998 688999999999999998876 49999764433 334456665543
|
|
| >KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.02 E-value=4.4e-11 Score=135.81 Aligned_cols=129 Identities=22% Similarity=0.484 Sum_probs=104.4
Q ss_pred CCCeEEEEEEEEeecCCCCCCCCCCCcEEEEEEC--------------------------CE-----EEEeeeccCCCCC
Q 001987 533 GDGWVLTVALVEGVNLASSEMTGLSDPYVVFTCN--------------------------GK-----TRTSSVQLQTCDP 581 (985)
Q Consensus 533 ~~~g~L~V~v~~a~~L~~~d~~g~~DPyv~v~~~--------------------------~~-----~~kT~~~~~tlnP 581 (985)
.....+.|.+.+|+||.++|.+|.||||+...+- |. ..-|+++++||||
T Consensus 111 ~P~~~l~is~~~ak~l~akd~ngfSdP~~m~g~~p~~~~~~~pra~~eqrdgl~~~~~~~GpiPAKlIkatsvk~~TLnP 190 (1103)
T KOG1328|consen 111 PPSVLLNISLLEAKDLIAKDVNGFSDPFAMMGVVPGTRKENSPRALHEQRDGLMHRFQDTGPIPAKLIKATSVKKKTLNP 190 (1103)
T ss_pred CCcHHHHHHHHHhcCccccCCCCCCChhhhhccccccccccChhhhhhhhhhhhhccccCCCCcHHHhhhcccccccCCc
Confidence 3445678899999999999999999999988661 00 2357889999999
Q ss_pred eEeEEEEEEeecCCCCEEEEEEEecCCC---------------C-----------------CC---CCccceEEEEeecc
Q 001987 582 QWHDILEFDAMEEPPSVLDVEVFDFDGP---------------F-----------------DQ---ATSLGHAEINFLKH 626 (985)
Q Consensus 582 ~Wne~f~f~v~~~~~~~L~v~V~D~d~~---------------~-----------------~~---dd~lG~~~i~l~~l 626 (985)
+|+|.|.|.+-+-....+++-+||+|-- + +. |||+|.+.|||.++
T Consensus 191 kW~EkF~F~IeDv~tDqfHlDIWDHDDe~sv~dAvs~LNeV~G~kG~GRyFKqv~qSARans~d~tDDFLGciNipl~Ei 270 (1103)
T KOG1328|consen 191 KWSEKFQFTIEDVQTDQFHLDIWDHDDEESVLDAVSSLNEVTGFKGIGRYFKQVTQSARANSDDCTDDFLGCINIPLAEI 270 (1103)
T ss_pred chhhheeeehhccccceeeeecccCCccHHHHHHHHHHhhhhcchhHHHHHHHHHHHHhcCCCccccccccccccchhcC
Confidence 9999999997666677999999999831 1 22 89999999999998
Q ss_pred ccCcccceEEEcccc-ccCCcceeEEEEEeeecCCCc
Q 001987 627 TSTELADMWVSLEGK-LAQSAQSKVHLRIFLENNNGV 662 (985)
Q Consensus 627 ~~~~~~~~w~~L~~~-~~~~~~g~l~l~~~ls~~~~~ 662 (985)
... ..+.||.|++. .+...+|.++|.+|++...+.
T Consensus 271 P~~-Gld~WFkLepRS~~S~VqG~~~LklwLsT~e~~ 306 (1103)
T KOG1328|consen 271 PPD-GLDQWFKLEPRSDKSKVQGQVKLKLWLSTKEEG 306 (1103)
T ss_pred Ccc-hHHHHhccCcccccccccceEEEEEEEeeeccc
Confidence 765 47889999985 444578999999998776543
|
|
| >cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.6e-09 Score=103.85 Aligned_cols=86 Identities=23% Similarity=0.332 Sum_probs=74.5
Q ss_pred EEEEEEEEeecCC----------CCCcEEEEEECC---eEEeecCccCCCC--CeEeeEEEEEEec--------------
Q 001987 5 RLYVYVLQGQDLL----------AKDSYVKVQIGK---HKSKSRILKNNSN--PVWNEEFVFRVHN-------------- 55 (985)
Q Consensus 5 ~L~V~V~~Ar~L~----------~~DPyv~v~l~~---~~~kT~v~~~t~n--P~wnE~f~f~v~~-------------- 55 (985)
.|+|.|.+|+|++ .+||||++.+.+ .+++|.|+.+++| |.||+.|.|+++.
T Consensus 1 eLRViIw~~~~v~~~~~~~~g~~~sD~yVK~~L~~~~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~~~~~~~~~~ 80 (133)
T cd08374 1 ELRVIVWNTRDVLNDDTNITGEKMSDIYVKGWLDGLEEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEKKIVVIKKEH 80 (133)
T ss_pred CEEEEEEECcCCcccccccCCccccCeEEEEEEccCcccccccceEEecCCCCcEEeEEEEEeeecCCccceeEEEeecc
Confidence 4899999999965 399999999975 4599999999999 9999999998652
Q ss_pred ---------CCCceEEEEEEecCCCCCCCCCCCCeeEEEEEeCcccccc
Q 001987 56 ---------IDDEELVVSVFQHNDDSGLFGSSGELMGRVRVPVSSIAAE 95 (985)
Q Consensus 56 ---------~~~~~L~~~V~D~d~~~~~~~~~d~~lG~~~i~L~~l~~~ 95 (985)
.....|.|+|||.| + .++|++||++.++|..+...
T Consensus 81 ~~~~~~~e~~~~~~L~lqvwD~D---~--~s~dd~iG~~~l~l~~l~~~ 124 (133)
T cd08374 81 FWSLDETEYKIPPKLTLQVWDND---K--FSPDDFLGSLELDLSILPRP 124 (133)
T ss_pred ccccCcceEecCcEEEEEEEECc---c--cCCCCcceEEEEEhhhcccc
Confidence 23578999999999 5 57999999999999988765
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >PLN02223 phosphoinositide phospholipase C | Back alignment and domain information |
|---|
Probab=99.00 E-value=3.1e-09 Score=122.20 Aligned_cols=113 Identities=21% Similarity=0.321 Sum_probs=89.9
Q ss_pred CcEEEEEEEEeecCC-----------CCCcEEEEEECC-----eEEeecCccCCCCCeEeeEEEEEEecCCCceEEEEEE
Q 001987 3 STRLYVYVLQGQDLL-----------AKDSYVKVQIGK-----HKSKSRILKNNSNPVWNEEFVFRVHNIDDEELVVSVF 66 (985)
Q Consensus 3 ~~~L~V~V~~Ar~L~-----------~~DPyv~v~l~~-----~~~kT~v~~~t~nP~wnE~f~f~v~~~~~~~L~~~V~ 66 (985)
...|.|+|+.|++++ ..||||+|.+.+ .+++|++..|+.||.|||+|.|.+..+.-..|+|+|+
T Consensus 408 ~~~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvWne~F~F~i~~PELAlLrf~V~ 487 (537)
T PLN02223 408 VKILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWGEEFTFPLTYPDLALISFEVY 487 (537)
T ss_pred ceEEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCcceeEEEeCCCCcCceecceeEEEEEccCceEEEEEEE
Confidence 357999999999873 368999999964 3478888888999999999999988888889999999
Q ss_pred ecCCCCCCCCCCCCeeEEEEEeCccccccCCCCCCCeEEEeecCCCCCCCCccccEEEEEEEE
Q 001987 67 QHNDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTNKDCGKILLTISL 129 (985)
Q Consensus 67 D~d~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~~G~I~lsl~~ 129 (985)
|+| . .++++|+|+..+|+..+..+ .++++|.+. .+. .-..-.|++.+.|
T Consensus 488 D~D---~--~~~ddfiGQ~~LPv~~Lr~G------yR~VpL~~~-~g~--~l~~~~Ll~~f~~ 536 (537)
T PLN02223 488 DYE---V--STADAFCGQTCLPVSELIEG------IRAVPLYDE-RGK--ACSSTMLLTRFKW 536 (537)
T ss_pred ecC---C--CCCCcEEEEEecchHHhcCC------ceeEeccCC-CcC--CCCCceEEEEEEe
Confidence 999 3 56899999999999999864 456888733 322 2234567776665
|
|
| >cd00030 C2 C2 domain | Back alignment and domain information |
|---|
Probab=98.98 E-value=2.7e-09 Score=96.85 Aligned_cols=94 Identities=35% Similarity=0.656 Sum_probs=80.4
Q ss_pred EEEEEEEeecCC------CCCcEEEEEECC-eEEeecCccCCCCCeEeeEEEEEEecCCCceEEEEEEecCCCCCCCCCC
Q 001987 6 LYVYVLQGQDLL------AKDSYVKVQIGK-HKSKSRILKNNSNPVWNEEFVFRVHNIDDEELVVSVFQHNDDSGLFGSS 78 (985)
Q Consensus 6 L~V~V~~Ar~L~------~~DPyv~v~l~~-~~~kT~v~~~t~nP~wnE~f~f~v~~~~~~~L~~~V~D~d~~~~~~~~~ 78 (985)
|.|+|++|++|. .+||||.+.+.+ ..++|+++.++.||.|||.|.|.+.......|.|+|||.+ . .+.
T Consensus 1 l~v~i~~~~~l~~~~~~~~~~~~v~v~~~~~~~~~T~~~~~~~~P~w~~~~~~~~~~~~~~~l~i~v~~~~---~--~~~ 75 (102)
T cd00030 1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLDPESDTLTVEVWDKD---R--FSK 75 (102)
T ss_pred CEEEEEeeeCCCCcCCCCCCCcEEEEEeccCceEecceeCCCCCCcccceEEEEccCCCCCEEEEEEEecC---C--CCC
Confidence 579999999997 689999999998 7899999999999999999999985446889999999999 3 356
Q ss_pred CCeeEEEEEeCcccc-ccCCCCCCCeEEEe
Q 001987 79 GELMGRVRVPVSSIA-AEDNHMLPPTWFSL 107 (985)
Q Consensus 79 d~~lG~~~i~L~~l~-~~~~~~~~~~W~~L 107 (985)
+.+||++.+++.++. .. .....|++|
T Consensus 76 ~~~ig~~~~~l~~l~~~~---~~~~~~~~l 102 (102)
T cd00030 76 DDFLGEVEIPLSELLDSG---KEGELWLPL 102 (102)
T ss_pred CceeEEEEEeHHHhhhcC---CcCcceecC
Confidence 899999999999987 32 235678765
|
The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. |
| >PLN02230 phosphoinositide phospholipase C 4 | Back alignment and domain information |
|---|
Probab=98.98 E-value=2.5e-09 Score=125.42 Aligned_cols=118 Identities=16% Similarity=0.175 Sum_probs=93.6
Q ss_pred CeEEEEEEEEeecCCCC------CCCCCCCcEEEEEECC-----EEEEeeeccCCCCCeEeEEEEEEeecCCCCEEEEEE
Q 001987 535 GWVLTVALVEGVNLASS------EMTGLSDPYVVFTCNG-----KTRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEV 603 (985)
Q Consensus 535 ~g~L~V~v~~a~~L~~~------d~~g~~DPyv~v~~~~-----~~~kT~~~~~tlnP~Wne~f~f~v~~~~~~~L~v~V 603 (985)
...|.|+|+.|.+++.. +.....||||+|.+.| .+.+|++..++.||+|||+|+|.+..+.-..|+|.|
T Consensus 468 ~~~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wneef~F~l~vPELAllRf~V 547 (598)
T PLN02230 468 KKTLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWNKEFIFPLAVPELALLRVEV 547 (598)
T ss_pred CcEEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCCcccceeccCCCCCCccCCeeEEEEEcCceeEEEEEE
Confidence 35799999999987521 2233579999999953 356888999999999999999998777778999999
Q ss_pred EecCCCCCCCCccceEEEEeeccccCcccceEEEccccccCC-cceeEEEEEee
Q 001987 604 FDFDGPFDQATSLGHAEINFLKHTSTELADMWVSLEGKLAQS-AQSKVHLRIFL 656 (985)
Q Consensus 604 ~D~d~~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~-~~g~l~l~~~l 656 (985)
+|+|. .++|||+|++.||+..|..|.. .++|.++.+.. ..-.|.+++.+
T Consensus 548 ~d~d~-~~~ddfiGQ~~lPv~~Lr~GyR---~V~L~~~~G~~l~~~~Ll~~f~~ 597 (598)
T PLN02230 548 HEHDI-NEKDDFGGQTCLPVSEIRQGIH---AVPLFNRKGVKYSSTRLLMRFEF 597 (598)
T ss_pred EECCC-CCCCCEEEEEEcchHHhhCccc---eEeccCCCcCCCCCCeeEEEEEe
Confidence 99998 5899999999999999988764 56887754443 33456666643
|
|
| >PLN02270 phospholipase D alpha | Back alignment and domain information |
|---|
Probab=98.98 E-value=3.2e-09 Score=126.77 Aligned_cols=121 Identities=19% Similarity=0.197 Sum_probs=99.9
Q ss_pred CeEEEEEEEEeecCCCCC------------------CCCCCCcEEEEEECC-EEEEeeeccC-CCCCeEeEEEEEEeecC
Q 001987 535 GWVLTVALVEGVNLASSE------------------MTGLSDPYVVFTCNG-KTRTSSVQLQ-TCDPQWHDILEFDAMEE 594 (985)
Q Consensus 535 ~g~L~V~v~~a~~L~~~d------------------~~g~~DPyv~v~~~~-~~~kT~~~~~-tlnP~Wne~f~f~v~~~ 594 (985)
-|.|.|+|.+|++|+..+ ..+.+||||.|.+++ +..+|+++.+ ..||+|||.|.+. +..
T Consensus 7 hg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~a~v~rtr~~~~~~~~p~w~e~f~i~-~ah 85 (808)
T PLN02270 7 HGTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLEKARVGRTRKIENEPKNPRWYESFHIY-CAH 85 (808)
T ss_pred ecceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeCCcEEEEEeecCCCCCCCccccceEEe-ecc
Confidence 468999999999998631 135789999999986 5569999988 4699999999999 466
Q ss_pred CCCEEEEEEEecCCCCCCCCccceEEEEeeccccCcccceEEEccccccCCc--ceeEEEEEeeec
Q 001987 595 PPSVLDVEVFDFDGPFDQATSLGHAEINFLKHTSTELADMWVSLEGKLAQSA--QSKVHLRIFLEN 658 (985)
Q Consensus 595 ~~~~L~v~V~D~d~~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~--~g~l~l~~~ls~ 658 (985)
....+.|+|.|.|. ++. .+||++.||+.++..+...+.|+++.+..+.+. +.+||+++.|..
T Consensus 86 ~~~~v~f~vkd~~~-~g~-~~ig~~~~p~~~~~~g~~i~~~~~~~~~~~~p~~~~~~~~~~~~f~~ 149 (808)
T PLN02270 86 MASNIIFTVKDDNP-IGA-TLIGRAYIPVEEILDGEEVDRWVEILDNDKNPIHGGSKIHVKLQYFE 149 (808)
T ss_pred CcceEEEEEecCCc-cCc-eEEEEEEEEHHHhcCCCccccEEeccCCCCCcCCCCCEEEEEEEEEE
Confidence 67899999999997 554 599999999999999999999999988655544 348888886544
|
|
| >PLN02952 phosphoinositide phospholipase C | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.1e-08 Score=120.33 Aligned_cols=95 Identities=27% Similarity=0.373 Sum_probs=81.9
Q ss_pred CcEEEEEEEEeecCC------------CCCcEEEEEECC-----eEEeecCccCCCCCeEeeEEEEEEecCCCceEEEEE
Q 001987 3 STRLYVYVLQGQDLL------------AKDSYVKVQIGK-----HKSKSRILKNNSNPVWNEEFVFRVHNIDDEELVVSV 65 (985)
Q Consensus 3 ~~~L~V~V~~Ar~L~------------~~DPyv~v~l~~-----~~~kT~v~~~t~nP~wnE~f~f~v~~~~~~~L~~~V 65 (985)
...|.|+|+.|.+|+ ..||||+|.+-+ .+.+|+++.++.||.|||+|.|.+..+.-..|+|.|
T Consensus 469 ~~~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWnE~F~F~i~~PELAllrf~V 548 (599)
T PLN02952 469 KKTLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADNAKKKTKIIEDNWYPAWNEEFSFPLTVPELALLRIEV 548 (599)
T ss_pred cceEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCCCcceeeeeccCCCCcccCCeeEEEEEcCCccEEEEEE
Confidence 468999999998874 248999999953 468999999999999999999998777778899999
Q ss_pred EecCCCCCCCCCCCCeeEEEEEeCccccccCCCCCCCeEEEee
Q 001987 66 FQHNDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLE 108 (985)
Q Consensus 66 ~D~d~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~ 108 (985)
+|+| . .+.++|+|+..+||..+..+ .+|++|.
T Consensus 549 ~D~D---~--~~~ddfiGq~~lPv~~Lr~G------yR~VpL~ 580 (599)
T PLN02952 549 REYD---M--SEKDDFGGQTCLPVSELRPG------IRSVPLH 580 (599)
T ss_pred EecC---C--CCCCCeEEEEEcchhHhcCC------ceeEeCc
Confidence 9999 3 56899999999999999864 4689997
|
|
| >PLN02222 phosphoinositide phospholipase C 2 | Back alignment and domain information |
|---|
Probab=98.90 E-value=9.5e-09 Score=120.42 Aligned_cols=116 Identities=15% Similarity=0.202 Sum_probs=91.2
Q ss_pred eEEEEEEEEeecCC----C--CCCCCCCCcEEEEEECC-----EEEEeeeccCCCCCeEeEEEEEEeecCCCCEEEEEEE
Q 001987 536 WVLTVALVEGVNLA----S--SEMTGLSDPYVVFTCNG-----KTRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVF 604 (985)
Q Consensus 536 g~L~V~v~~a~~L~----~--~d~~g~~DPyv~v~~~~-----~~~kT~~~~~tlnP~Wne~f~f~v~~~~~~~L~v~V~ 604 (985)
..|+|+|+.|.+++ . .+.....||||+|.+.| .+.+|+++.++.||+|||+|+|.+..+.-..|+|.|+
T Consensus 452 ~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e~f~F~i~~PeLAllRf~V~ 531 (581)
T PLN02222 452 TTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDEVFEFPLTVPELALLRLEVH 531 (581)
T ss_pred ceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCcceeeeEecCCCCCcccCCeeEEEEEcCceeEEEEEEE
Confidence 57999999998853 1 11234579999999953 4679999999999999999999987777789999999
Q ss_pred ecCCCCCCCCccceEEEEeeccccCcccceEEEccccccCC-cceeEEEEEe
Q 001987 605 DFDGPFDQATSLGHAEINFLKHTSTELADMWVSLEGKLAQS-AQSKVHLRIF 655 (985)
Q Consensus 605 D~d~~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~-~~g~l~l~~~ 655 (985)
|+|. .+.|+|+|++.||+..+..|.. .++|.+..+.. ....|.+++.
T Consensus 532 d~D~-~~~ddfigq~~lPv~~Lr~GyR---~V~L~~~~g~~l~~a~Lfv~~~ 579 (581)
T PLN02222 532 EYDM-SEKDDFGGQTCLPVWELSQGIR---AFPLHSRKGEKYKSVKLLVKVE 579 (581)
T ss_pred ECCC-CCCCcEEEEEEcchhhhhCccc---eEEccCCCcCCCCCeeEEEEEE
Confidence 9998 6889999999999999988764 56887654443 2335555553
|
|
| >PLN02228 Phosphoinositide phospholipase C | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.1e-08 Score=119.73 Aligned_cols=120 Identities=17% Similarity=0.186 Sum_probs=95.7
Q ss_pred eEEEEEEEEeecCCC---CC---CCCCCCcEEEEEECC-----EEEEeeeccCCCCCeE-eEEEEEEeecCCCCEEEEEE
Q 001987 536 WVLTVALVEGVNLAS---SE---MTGLSDPYVVFTCNG-----KTRTSSVQLQTCDPQW-HDILEFDAMEEPPSVLDVEV 603 (985)
Q Consensus 536 g~L~V~v~~a~~L~~---~d---~~g~~DPyv~v~~~~-----~~~kT~~~~~tlnP~W-ne~f~f~v~~~~~~~L~v~V 603 (985)
..|+|+|+.|++|+. .+ .....||||+|.+.| .+++|+++.++.||+| ||+|+|.+..+.-..|+|.|
T Consensus 431 ~~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~e~f~F~~~~pELA~lRf~V 510 (567)
T PLN02228 431 TTLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGNDEFLFQLRVPELALLWFKV 510 (567)
T ss_pred ceEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcceeeccCCCCCceECCCeEEEEEEcCceeEEEEEE
Confidence 479999999999742 11 123479999999843 4679999999999999 99999998777778999999
Q ss_pred EecCCCCCCCCccceEEEEeeccccCcccceEEEccccccCC-cceeEEEEEeeecC
Q 001987 604 FDFDGPFDQATSLGHAEINFLKHTSTELADMWVSLEGKLAQS-AQSKVHLRIFLENN 659 (985)
Q Consensus 604 ~D~d~~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~-~~g~l~l~~~ls~~ 659 (985)
+|+|. .+.|+++|++.|||..|..|.. .++|.+..+.. ....|.+++.+..+
T Consensus 511 ~D~d~-~~~d~figq~~lPv~~Lr~GYR---~VpL~~~~G~~l~~atLfv~~~~~~~ 563 (567)
T PLN02228 511 QDYDN-DTQNDFAGQTCLPLPELKSGVR---AVRLHDRAGKAYKNTRLLVSFALDPP 563 (567)
T ss_pred EeCCC-CCCCCEEEEEEcchhHhhCCee---EEEccCCCCCCCCCeEEEEEEEEcCc
Confidence 99998 6889999999999999988763 56887654443 45568888876554
|
|
| >smart00239 C2 Protein kinase C conserved region 2 (CalB) | Back alignment and domain information |
|---|
Probab=98.89 E-value=8.2e-09 Score=94.06 Aligned_cols=86 Identities=33% Similarity=0.606 Sum_probs=75.3
Q ss_pred EEEEEEEEeecCC------CCCcEEEEEECCe---EEeecCccCCCCCeEeeEEEEEEecCCCceEEEEEEecCCCCCCC
Q 001987 5 RLYVYVLQGQDLL------AKDSYVKVQIGKH---KSKSRILKNNSNPVWNEEFVFRVHNIDDEELVVSVFQHNDDSGLF 75 (985)
Q Consensus 5 ~L~V~V~~Ar~L~------~~DPyv~v~l~~~---~~kT~v~~~t~nP~wnE~f~f~v~~~~~~~L~~~V~D~d~~~~~~ 75 (985)
.|.|+|++|++|. ..+|||++.+... ..+|+++.++.||.|||+|.|.+.......|.|+|||.+ .
T Consensus 1 ~l~i~i~~~~~l~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~i~v~~~~---~-- 75 (101)
T smart00239 1 TLTVKIISARNLPKKDKKGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPPPELAELEIEVYDKD---R-- 75 (101)
T ss_pred CeEEEEEEeeCCCCCCCCCCCCceEEEEEeCCccceEeeeEecCCCCCcccceEEEEecCcccCEEEEEEEecC---C--
Confidence 3789999999998 4799999999875 799999999999999999999985444899999999998 3
Q ss_pred CCCCCeeEEEEEeCcccccc
Q 001987 76 GSSGELMGRVRVPVSSIAAE 95 (985)
Q Consensus 76 ~~~d~~lG~~~i~L~~l~~~ 95 (985)
.+.+.++|.+.+++.++..+
T Consensus 76 ~~~~~~~G~~~~~l~~~~~~ 95 (101)
T smart00239 76 FGRDDFIGQVTIPLSDLLLG 95 (101)
T ss_pred ccCCceeEEEEEEHHHcccC
Confidence 35689999999999988765
|
Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles. |
| >KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.89 E-value=2.9e-09 Score=118.19 Aligned_cols=135 Identities=16% Similarity=0.311 Sum_probs=110.1
Q ss_pred eEEEEEEEEeecCCCCCC-CCCCCcEEEEEECCEEEEeeeccCCCCCeEe-EEEEEEeec--CCCCEEEEEEEecCCCCC
Q 001987 536 WVLTVALVEGVNLASSEM-TGLSDPYVVFTCNGKTRTSSVQLQTCDPQWH-DILEFDAME--EPPSVLDVEVFDFDGPFD 611 (985)
Q Consensus 536 g~L~V~v~~a~~L~~~d~-~g~~DPyv~v~~~~~~~kT~~~~~tlnP~Wn-e~f~f~v~~--~~~~~L~v~V~D~d~~~~ 611 (985)
|.|.|+|..|++||.+|. ....|.||.+++++..+||.+..++|||.|| +.|.|.|.+ .....|.|+++|+|. ++
T Consensus 3 gkl~vki~a~r~lpvmdkasd~tdafveik~~n~t~ktdvf~kslnp~wnsdwfkfevddadlqdeplqi~lld~dt-ys 81 (1169)
T KOG1031|consen 3 GKLGVKIKAARHLPVMDKASDLTDAFVEIKFANTTFKTDVFLKSLNPQWNSDWFKFEVDDADLQDEPLQIRLLDHDT-YS 81 (1169)
T ss_pred CcceeEEEeccCCcccccccccchheeEEEecccceehhhhhhhcCCcccccceEEecChhhhccCCeeEEEecccc-cc
Confidence 678999999999999996 4568999999999999999999999999999 899999743 335589999999999 89
Q ss_pred CCCccceEEEEeecccc----------CcccceEEEccccccCCcceeEEEEEeeecCCCcchhhhhhhhh
Q 001987 612 QATSLGHAEINFLKHTS----------TELADMWVSLEGKLAQSAQSKVHLRIFLENNNGVETIKEYLTKM 672 (985)
Q Consensus 612 ~dd~lG~~~i~l~~l~~----------~~~~~~w~~L~~~~~~~~~g~l~l~~~ls~~~~~~~l~~~l~~l 672 (985)
.+|-||.+.|++..+.. +.....|+|+.+. -....|+|.+-+......+.+.+.+.+|..
T Consensus 82 andaigkv~i~idpl~~e~aaqavhgkgtvisgw~pifdt-ihgirgeinvivkvdlfndlnkf~qsscgv 151 (1169)
T KOG1031|consen 82 ANDAIGKVNIDIDPLCLEEAAQAVHGKGTVISGWFPIFDT-IHGIRGEINVIVKVDLFNDLNKFPQSSCGV 151 (1169)
T ss_pred cccccceeeeccChHHHHhHHhhhcCCceEEeeeeeccee-cccccceeEEEEEEeehhhhhhcccccccc
Confidence 99999999999987543 2344679999752 123578898888887777777666655543
|
|
| >KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.89 E-value=5.2e-09 Score=122.24 Aligned_cols=117 Identities=18% Similarity=0.319 Sum_probs=92.5
Q ss_pred EEEEEEEEeecCCCCC-C---CCCCCcEEEEEECC-----EEEEee-eccCCCCCeEeEEEEEEeecCCCCEEEEEEEec
Q 001987 537 VLTVALVEGVNLASSE-M---TGLSDPYVVFTCNG-----KTRTSS-VQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDF 606 (985)
Q Consensus 537 ~L~V~v~~a~~L~~~d-~---~g~~DPyv~v~~~~-----~~~kT~-~~~~tlnP~Wne~f~f~v~~~~~~~L~v~V~D~ 606 (985)
.|+|+|+.|++++..- . ...+||||.|.+.| ...+|+ +..++.||.|+|+|+|.+..+.-..|+|.|+|+
T Consensus 617 tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPELAliRF~V~d~ 696 (746)
T KOG0169|consen 617 TLKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVPELALIRFEVHDY 696 (746)
T ss_pred eeEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEeccceeEEEEEEEec
Confidence 7999999999765533 2 34689999999965 357899 577899999999999998888888999999999
Q ss_pred CCCCCCCCccceEEEEeeccccCcccceEEEccccccCC-cceeEEEEEeee
Q 001987 607 DGPFDQATSLGHAEINFLKHTSTELADMWVSLEGKLAQS-AQSKVHLRIFLE 657 (985)
Q Consensus 607 d~~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~-~~g~l~l~~~ls 657 (985)
|. .++|||+|+..||+.++..|..+ ++|.+..|.. ..-.|.+++.+.
T Consensus 697 d~-~~~ddF~GQ~tlP~~~L~~GyRh---VpL~~~~G~~~~~asLfv~i~~~ 744 (746)
T KOG0169|consen 697 DY-IGKDDFIGQTTLPVSELRQGYRH---VPLLSREGEALSSASLFVRIAIV 744 (746)
T ss_pred CC-CCcccccceeeccHHHhhCceee---eeecCCCCccccceeEEEEEEEe
Confidence 98 68999999999999999888754 4676543332 234566666543
|
|
| >PLN02270 phospholipase D alpha | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.6e-08 Score=120.93 Aligned_cols=120 Identities=18% Similarity=0.320 Sum_probs=98.5
Q ss_pred CCcEEEEEEEEeecCC------------------------CCCcEEEEEECCeE-EeecCccCC-CCCeEeeEEEEEEec
Q 001987 2 VSTRLYVYVLQGQDLL------------------------AKDSYVKVQIGKHK-SKSRILKNN-SNPVWNEEFVFRVHN 55 (985)
Q Consensus 2 ~~~~L~V~V~~Ar~L~------------------------~~DPyv~v~l~~~~-~kT~v~~~t-~nP~wnE~f~f~v~~ 55 (985)
.++.|.|+|++|++|+ ++||||.|.+.+.+ .||+++.+. .||.|+|+|.+.+ .
T Consensus 6 lhg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~a~v~rtr~~~~~~~~p~w~e~f~i~~-a 84 (808)
T PLN02270 6 LHGTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLEKARVGRTRKIENEPKNPRWYESFHIYC-A 84 (808)
T ss_pred eecceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeCCcEEEEEeecCCCCCCCccccceEEee-c
Confidence 5789999999999885 35999999998755 899999984 6999999999998 5
Q ss_pred CCCceEEEEEEecCCCCCCCCCCCCeeEEEEEeCccccccCCCCCCCeEEEeecCCCCCCCCccccEEEEEEEEEecC
Q 001987 56 IDDEELVVSVFQHNDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTNKDCGKILLTISLNGKG 133 (985)
Q Consensus 56 ~~~~~L~~~V~D~d~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~~G~I~lsl~~~~~~ 133 (985)
.....|.|.|.|.| - + ...+||.+.+|+.++..++ ....|++|... .+++ .+...+|++++.|.+-.
T Consensus 85 h~~~~v~f~vkd~~---~--~-g~~~ig~~~~p~~~~~~g~---~i~~~~~~~~~-~~~p-~~~~~~~~~~~~f~~~~ 151 (808)
T PLN02270 85 HMASNIIFTVKDDN---P--I-GATLIGRAYIPVEEILDGE---EVDRWVEILDN-DKNP-IHGGSKIHVKLQYFEVT 151 (808)
T ss_pred cCcceEEEEEecCC---c--c-CceEEEEEEEEHHHhcCCC---ccccEEeccCC-CCCc-CCCCCEEEEEEEEEEcc
Confidence 66689999999998 2 2 5669999999999998763 47899999833 4443 33445999999998743
|
|
| >KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.1e-09 Score=124.72 Aligned_cols=92 Identities=25% Similarity=0.398 Sum_probs=81.6
Q ss_pred CeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCE-------EEEeeeccCCCCCeEeEEEEEEeecCC----CCEEEEEE
Q 001987 535 GWVLTVALVEGVNLASSEMTGLSDPYVVFTCNGK-------TRTSSVQLQTCDPQWHDILEFDAMEEP----PSVLDVEV 603 (985)
Q Consensus 535 ~g~L~V~v~~a~~L~~~d~~g~~DPyv~v~~~~~-------~~kT~~~~~tlnP~Wne~f~f~v~~~~----~~~L~v~V 603 (985)
.-.|.|.|+.|+++.+.|.||.|||||+|.++.+ ..+|+|+.+||||+|+|.|+|.|...+ ...|.|+|
T Consensus 946 ~q~L~veVlhA~diipLD~NGlSDPFVviEl~P~~~fp~v~~q~T~V~~rtLnPVfDE~FeFsVp~e~c~te~Am~~FTV 1025 (1103)
T KOG1328|consen 946 AQTLVVEVLHAKDIIPLDSNGLSDPFVVIELIPKFRFPAVPVQKTKVVSRTLNPVFDETFEFSVPPEPCSTETAMLHFTV 1025 (1103)
T ss_pred ccchhhhhhccccccccCCCCCCCCeEEEEeccccccccchhhhhhhhhccccchhhhheeeecCccccccccceEEEEe
Confidence 4478889999999999999999999999999743 469999999999999999999975433 44899999
Q ss_pred EecCCCCCCCCccceEEEEeeccc
Q 001987 604 FDFDGPFDQATSLGHAEINFLKHT 627 (985)
Q Consensus 604 ~D~d~~~~~dd~lG~~~i~l~~l~ 627 (985)
+|+|- ++.+||-|++.+.|.++.
T Consensus 1026 MDHD~-L~sNDFaGEA~L~Lg~vp 1048 (1103)
T KOG1328|consen 1026 MDHDY-LRSNDFAGEAFLELGDVP 1048 (1103)
T ss_pred eccce-ecccccchHHHHhhCCCC
Confidence 99998 899999999999999864
|
|
| >cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.5e-08 Score=90.93 Aligned_cols=84 Identities=17% Similarity=0.311 Sum_probs=72.4
Q ss_pred EEEEEEEeecCCCCC---CCCCCCcEEEEEECCE-EEEeeeccCCCCCeEeEEEEEEeecCCCCEEEEEEEecCCCCCCC
Q 001987 538 LTVALVEGVNLASSE---MTGLSDPYVVFTCNGK-TRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGPFDQA 613 (985)
Q Consensus 538 L~V~v~~a~~L~~~d---~~g~~DPyv~v~~~~~-~~kT~~~~~tlnP~Wne~f~f~v~~~~~~~L~v~V~D~d~~~~~d 613 (985)
|.|+|..|+|+.-.+ ..+.+||||.|++++. +.+|++ +.||.|||+|.|++ +....+.+.|||... +..
T Consensus 1 L~I~V~~~RdvdH~~~~~~~~~~etyV~IKved~~kaRTr~---srnd~WnE~F~i~V--dk~nEiel~VyDk~~--~~~ 73 (109)
T cd08689 1 LTITITSARDVDHIASPRFSKRPETYVSIKVEDVERARTKP---SRNDRWNEDFEIPV--EKNNEEEVIVYDKGG--DQP 73 (109)
T ss_pred CEEEEEEEecCccccchhhccCCCcEEEEEECCEEEEeccC---CCCCcccceEEEEe--cCCcEEEEEEEeCCC--Cee
Confidence 579999999999888 5788999999999976 788887 58999999999996 457899999999875 566
Q ss_pred CccceEEEEeecccc
Q 001987 614 TSLGHAEINFLKHTS 628 (985)
Q Consensus 614 d~lG~~~i~l~~l~~ 628 (985)
-.||-.-|.++++..
T Consensus 74 ~Pi~llW~~~sdi~E 88 (109)
T cd08689 74 VPVGLLWLRLSDIAE 88 (109)
T ss_pred cceeeehhhHHHHHH
Confidence 789999999888644
|
This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that |
| >PLN02230 phosphoinositide phospholipase C 4 | Back alignment and domain information |
|---|
Probab=98.79 E-value=3.9e-08 Score=115.48 Aligned_cols=113 Identities=26% Similarity=0.389 Sum_probs=89.4
Q ss_pred CcEEEEEEEEeecCC------------CCCcEEEEEECC-----eEEeecCccCCCCCeEeeEEEEEEecCCCceEEEEE
Q 001987 3 STRLYVYVLQGQDLL------------AKDSYVKVQIGK-----HKSKSRILKNNSNPVWNEEFVFRVHNIDDEELVVSV 65 (985)
Q Consensus 3 ~~~L~V~V~~Ar~L~------------~~DPyv~v~l~~-----~~~kT~v~~~t~nP~wnE~f~f~v~~~~~~~L~~~V 65 (985)
..+|.|+|+.+.+++ ..||||+|.+-+ .+.+|++..++.||.|||+|.|.+..+.-..|+|+|
T Consensus 468 ~~~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wneef~F~l~vPELAllRf~V 547 (598)
T PLN02230 468 KKTLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWNKEFIFPLAVPELALLRVEV 547 (598)
T ss_pred CcEEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCCcccceeccCCCCCCccCCeeEEEEEcCceeEEEEEE
Confidence 368999999999864 259999999953 347899999999999999999998778889999999
Q ss_pred EecCCCCCCCCCCCCeeEEEEEeCccccccCCCCCCCeEEEeecCCCCCCCCccccEEEEEEEE
Q 001987 66 FQHNDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTNKDCGKILLTISL 129 (985)
Q Consensus 66 ~D~d~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~~G~I~lsl~~ 129 (985)
+|+| ..++++|+|+..+|+..|..+ .+..+|.+..+ . .-..-.|++.+.+
T Consensus 548 ~d~d-----~~~~ddfiGQ~~lPv~~Lr~G------yR~V~L~~~~G-~--~l~~~~Ll~~f~~ 597 (598)
T PLN02230 548 HEHD-----INEKDDFGGQTCLPVSEIRQG------IHAVPLFNRKG-V--KYSSTRLLMRFEF 597 (598)
T ss_pred EECC-----CCCCCCEEEEEEcchHHhhCc------cceEeccCCCc-C--CCCCCeeEEEEEe
Confidence 9999 357899999999999999864 34578873332 2 1123467766655
|
|
| >COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.76 E-value=2.8e-08 Score=120.39 Aligned_cols=96 Identities=19% Similarity=0.406 Sum_probs=84.7
Q ss_pred CCCeEEEEEEEEeecCCCCC--CCCCCCcEEEEEECCE-EEEeeeccCCCCCeEeEEEEEEeecCCCCEEEEEEEecCCC
Q 001987 533 GDGWVLTVALVEGVNLASSE--MTGLSDPYVVFTCNGK-TRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGP 609 (985)
Q Consensus 533 ~~~g~L~V~v~~a~~L~~~d--~~g~~DPyv~v~~~~~-~~kT~~~~~tlnP~Wne~f~f~v~~~~~~~L~v~V~D~d~~ 609 (985)
..-|+|.|+|.+|++|...| .++..|||+.+...+. ..||+++++++||+|||+|.+. .......|.++|||++.
T Consensus 433 ~aIGVv~vkI~sa~~lk~~d~~i~~~vDpyit~~~~~r~~gkT~v~~nt~nPvwNEt~Yi~-lns~~d~L~LslyD~n~- 510 (1227)
T COG5038 433 TAIGVVEVKIKSAEGLKKSDSTINGTVDPYITVTFSDRVIGKTRVKKNTLNPVWNETFYIL-LNSFTDPLNLSLYDFNS- 510 (1227)
T ss_pred CeeEEEEEEEeeccCcccccccccCCCCceEEEEeccccCCccceeeccCCccccceEEEE-ecccCCceeEEEEeccc-
Confidence 35689999999999999999 5899999999998654 4599999999999999999998 56777899999999888
Q ss_pred CCCCCccceEEEEeeccccCc
Q 001987 610 FDQATSLGHAEINFLKHTSTE 630 (985)
Q Consensus 610 ~~~dd~lG~~~i~l~~l~~~~ 630 (985)
+.+|+.+|++.++|..+....
T Consensus 511 ~~sd~vvG~~~l~L~~L~~~~ 531 (1227)
T COG5038 511 FKSDKVVGSTQLDLALLHQNP 531 (1227)
T ss_pred cCCcceeeeEEechHHhhhcc
Confidence 799999999999999876543
|
|
| >PLN02222 phosphoinositide phospholipase C 2 | Back alignment and domain information |
|---|
Probab=98.76 E-value=6.4e-08 Score=113.59 Aligned_cols=113 Identities=23% Similarity=0.357 Sum_probs=88.7
Q ss_pred CcEEEEEEEEeecCC------------CCCcEEEEEECC-----eEEeecCccCCCCCeEeeEEEEEEecCCCceEEEEE
Q 001987 3 STRLYVYVLQGQDLL------------AKDSYVKVQIGK-----HKSKSRILKNNSNPVWNEEFVFRVHNIDDEELVVSV 65 (985)
Q Consensus 3 ~~~L~V~V~~Ar~L~------------~~DPyv~v~l~~-----~~~kT~v~~~t~nP~wnE~f~f~v~~~~~~~L~~~V 65 (985)
...|.|+|+.|.+++ ..||||+|.+.+ .+.+|+++.++.||.|||+|.|.+..+.-..|+|.|
T Consensus 451 ~~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e~f~F~i~~PeLAllRf~V 530 (581)
T PLN02222 451 KTTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDEVFEFPLTVPELALLRLEV 530 (581)
T ss_pred cceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCcceeeeEecCCCCCcccCCeeEEEEEcCceeEEEEEE
Confidence 357999999998742 368999999952 458999999999999999999998778889999999
Q ss_pred EecCCCCCCCCCCCCeeEEEEEeCccccccCCCCCCCeEEEeecCCCCCCCCccccEEEEEEEE
Q 001987 66 FQHNDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTNKDCGKILLTISL 129 (985)
Q Consensus 66 ~D~d~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~~G~I~lsl~~ 129 (985)
+|+| . .+.++|+|+..+|+..|..+ .+..+|.+..+ . .-..-.|.+.+.+
T Consensus 531 ~d~D---~--~~~ddfigq~~lPv~~Lr~G------yR~V~L~~~~g-~--~l~~a~Lfv~~~~ 580 (581)
T PLN02222 531 HEYD---M--SEKDDFGGQTCLPVWELSQG------IRAFPLHSRKG-E--KYKSVKLLVKVEF 580 (581)
T ss_pred EECC---C--CCCCcEEEEEEcchhhhhCc------cceEEccCCCc-C--CCCCeeEEEEEEe
Confidence 9999 3 56899999999999999864 44578873332 2 2223466666654
|
|
| >KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.75 E-value=3.2e-08 Score=115.84 Aligned_cols=112 Identities=21% Similarity=0.405 Sum_probs=89.7
Q ss_pred EEEEEEEEeecCC----------CCCcEEEEEECC-----eEEeec-CccCCCCCeEeeEEEEEEecCCCceEEEEEEec
Q 001987 5 RLYVYVLQGQDLL----------AKDSYVKVQIGK-----HKSKSR-ILKNNSNPVWNEEFVFRVHNIDDEELVVSVFQH 68 (985)
Q Consensus 5 ~L~V~V~~Ar~L~----------~~DPyv~v~l~~-----~~~kT~-v~~~t~nP~wnE~f~f~v~~~~~~~L~~~V~D~ 68 (985)
+|+|+|+.+.+++ .+||||.|.+-+ ...+|+ +..|+-||.|+|+|.|.+..+.-.-|+|.|+|+
T Consensus 617 tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPELAliRF~V~d~ 696 (746)
T KOG0169|consen 617 TLKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVPELALIRFEVHDY 696 (746)
T ss_pred eeEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEeccceeEEEEEEEec
Confidence 6999999999776 579999999864 348899 566699999999999999889999999999999
Q ss_pred CCCCCCCCCCCCeeEEEEEeCccccccCCCCCCCeEEEeecCCCCCCCCccccEEEEEEEEE
Q 001987 69 NDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTNKDCGKILLTISLN 130 (985)
Q Consensus 69 d~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~~G~I~lsl~~~ 130 (985)
| ..++|+|+|+..+|+..|..+ .+-++|.+. .|. .-....|.+.+.+.
T Consensus 697 d-----~~~~ddF~GQ~tlP~~~L~~G------yRhVpL~~~-~G~--~~~~asLfv~i~~~ 744 (746)
T KOG0169|consen 697 D-----YIGKDDFIGQTTLPVSELRQG------YRHVPLLSR-EGE--ALSSASLFVRIAIV 744 (746)
T ss_pred C-----CCCcccccceeeccHHHhhCc------eeeeeecCC-CCc--cccceeEEEEEEEe
Confidence 9 467899999999999999865 233777733 322 23445666666654
|
|
| >PLN02228 Phosphoinositide phospholipase C | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.7e-07 Score=109.68 Aligned_cols=115 Identities=19% Similarity=0.334 Sum_probs=91.8
Q ss_pred cEEEEEEEEeecCC------------CCCcEEEEEECC-----eEEeecCccCCCCCeE-eeEEEEEEecCCCceEEEEE
Q 001987 4 TRLYVYVLQGQDLL------------AKDSYVKVQIGK-----HKSKSRILKNNSNPVW-NEEFVFRVHNIDDEELVVSV 65 (985)
Q Consensus 4 ~~L~V~V~~Ar~L~------------~~DPyv~v~l~~-----~~~kT~v~~~t~nP~w-nE~f~f~v~~~~~~~L~~~V 65 (985)
..|+|+|+.|++|+ ..||||+|.+.+ .+.+|++++++.||.| ||+|.|.+..+.-..|+|.|
T Consensus 431 ~~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~e~f~F~~~~pELA~lRf~V 510 (567)
T PLN02228 431 TTLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGNDEFLFQLRVPELALLWFKV 510 (567)
T ss_pred ceEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcceeeccCCCCCceECCCeEEEEEEcCceeEEEEEE
Confidence 47999999999873 268999999853 3579999999999999 99999998777788999999
Q ss_pred EecCCCCCCCCCCCCeeEEEEEeCccccccCCCCCCCeEEEeecCCCCCCCCccccEEEEEEEEEec
Q 001987 66 FQHNDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTNKDCGKILLTISLNGK 132 (985)
Q Consensus 66 ~D~d~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~~G~I~lsl~~~~~ 132 (985)
+|+| . .+.++|+|+..+||..|..+ .+.++|.+..+ . .-....|++.+.+.+.
T Consensus 511 ~D~d---~--~~~d~figq~~lPv~~Lr~G------YR~VpL~~~~G-~--~l~~atLfv~~~~~~~ 563 (567)
T PLN02228 511 QDYD---N--DTQNDFAGQTCLPLPELKSG------VRAVRLHDRAG-K--AYKNTRLLVSFALDPP 563 (567)
T ss_pred EeCC---C--CCCCCEEEEEEcchhHhhCC------eeEEEccCCCC-C--CCCCeEEEEEEEEcCc
Confidence 9998 3 56899999999999999754 45678873333 2 2235678888887553
|
|
| >KOG1264 consensus Phospholipase C [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.1e-07 Score=109.95 Aligned_cols=102 Identities=21% Similarity=0.264 Sum_probs=84.7
Q ss_pred CCeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC------EEEEeeeccCCCCCeEe-EEEEEEeecCCCCEEEEEEEec
Q 001987 534 DGWVLTVALVEGVNLASSEMTGLSDPYVVFTCNG------KTRTSSVQLQTCDPQWH-DILEFDAMEEPPSVLDVEVFDF 606 (985)
Q Consensus 534 ~~g~L~V~v~~a~~L~~~d~~g~~DPyv~v~~~~------~~~kT~~~~~tlnP~Wn-e~f~f~v~~~~~~~L~v~V~D~ 606 (985)
....|.|.|+.|+.|+..+ .|..-|||.|.+-| ..++|.++.+++||+|| |.|+|.+.++.-..|++.|||.
T Consensus 1063 ~p~~lsv~vigaRHL~k~g-r~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nPe~A~lRF~V~ee 1141 (1267)
T KOG1264|consen 1063 LPMTLSVKVLGARHLPKLG-RSIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNPEFAFLRFVVYEE 1141 (1267)
T ss_pred cceEEEEEEeeccccccCC-CCccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCCceEEEEEEEecc
Confidence 3468999999999999644 45667999999843 34555668999999999 9999998888888999999999
Q ss_pred CCCCCCCCccceEEEEeeccccCcccceEEEccc
Q 001987 607 DGPFDQATSLGHAEINFLKHTSTELADMWVSLEG 640 (985)
Q Consensus 607 d~~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~~ 640 (985)
|. |+...|||++..|+..+..+-. -++|..
T Consensus 1142 Dm-fs~~~FiaqA~yPv~~ik~GfR---sVpLkN 1171 (1267)
T KOG1264|consen 1142 DM-FSDPNFLAQATYPVKAIKSGFR---SVPLKN 1171 (1267)
T ss_pred cc-cCCcceeeeeecchhhhhccce---eeeccc
Confidence 99 8888899999999999887653 346664
|
|
| >KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.61 E-value=9.9e-08 Score=106.26 Aligned_cols=117 Identities=21% Similarity=0.467 Sum_probs=98.9
Q ss_pred CcEEEEEEEEeecCC-------CCCcEEEEEECCeEEeecCccCCCCCeEe-eEEEEEEe--cCCCceEEEEEEecCCCC
Q 001987 3 STRLYVYVLQGQDLL-------AKDSYVKVQIGKHKSKSRILKNNSNPVWN-EEFVFRVH--NIDDEELVVSVFQHNDDS 72 (985)
Q Consensus 3 ~~~L~V~V~~Ar~L~-------~~DPyv~v~l~~~~~kT~v~~~t~nP~wn-E~f~f~v~--~~~~~~L~~~V~D~d~~~ 72 (985)
.++|.|+|..||+|| ..|.||.|.+.+..++|.|..+++||.|| +.|.|+|. +..+..|.+.+.|+|
T Consensus 2 pgkl~vki~a~r~lpvmdkasd~tdafveik~~n~t~ktdvf~kslnp~wnsdwfkfevddadlqdeplqi~lld~d--- 78 (1169)
T KOG1031|consen 2 PGKLGVKIKAARHLPVMDKASDLTDAFVEIKFANTTFKTDVFLKSLNPQWNSDWFKFEVDDADLQDEPLQIRLLDHD--- 78 (1169)
T ss_pred CCcceeEEEeccCCcccccccccchheeEEEecccceehhhhhhhcCCcccccceEEecChhhhccCCeeEEEeccc---
Confidence 578999999999999 57899999999999999999999999999 77999997 678899999999999
Q ss_pred CCCCCCCCeeEEEEEeCccccccC-------CCCCCCeEEEeecCCCCCCCCccccEEEEEEEE
Q 001987 73 GLFGSSGELMGRVRVPVSSIAAED-------NHMLPPTWFSLETPKTRKFTNKDCGKILLTISL 129 (985)
Q Consensus 73 ~~~~~~d~~lG~~~i~L~~l~~~~-------~~~~~~~W~~L~~~~~~~~~~~~~G~I~lsl~~ 129 (985)
. .+.+|-||.+.|++..+..++ .++....|+++.+.- ...+|+|.+-+..
T Consensus 79 t--ysandaigkv~i~idpl~~e~aaqavhgkgtvisgw~pifdti-----hgirgeinvivkv 135 (1169)
T KOG1031|consen 79 T--YSANDAIGKVNIDIDPLCLEEAAQAVHGKGTVISGWFPIFDTI-----HGIRGEINVIVKV 135 (1169)
T ss_pred c--cccccccceeeeccChHHHHhHHhhhcCCceEEeeeeecceec-----ccccceeEEEEEE
Confidence 4 578999999999998887552 224456799998332 3468999887665
|
|
| >cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.4e-07 Score=84.76 Aligned_cols=79 Identities=24% Similarity=0.441 Sum_probs=68.6
Q ss_pred EEEEEEEeecCC---------CCCcEEEEEECCe-EEeecCccCCCCCeEeeEEEEEEecCCCceEEEEEEecCCCCCCC
Q 001987 6 LYVYVLQGQDLL---------AKDSYVKVQIGKH-KSKSRILKNNSNPVWNEEFVFRVHNIDDEELVVSVFQHNDDSGLF 75 (985)
Q Consensus 6 L~V~V~~Ar~L~---------~~DPyv~v~l~~~-~~kT~v~~~t~nP~wnE~f~f~v~~~~~~~L~~~V~D~d~~~~~~ 75 (985)
|.|+|..||||. .+||||.|.+++. +.||++. .||.|||+|.|++ .....+.|.|||..
T Consensus 1 L~I~V~~~RdvdH~~~~~~~~~~etyV~IKved~~kaRTr~s---rnd~WnE~F~i~V--dk~nEiel~VyDk~------ 69 (109)
T cd08689 1 LTITITSARDVDHIASPRFSKRPETYVSIKVEDVERARTKPS---RNDRWNEDFEIPV--EKNNEEEVIVYDKG------ 69 (109)
T ss_pred CEEEEEEEecCccccchhhccCCCcEEEEEECCEEEEeccCC---CCCcccceEEEEe--cCCcEEEEEEEeCC------
Confidence 689999999998 5799999999875 7999885 7999999999999 36899999999988
Q ss_pred CCCCCeeEEEEEeCcccccc
Q 001987 76 GSSGELMGRVRVPVSSIAAE 95 (985)
Q Consensus 76 ~~~d~~lG~~~i~L~~l~~~ 95 (985)
....-.||..-+.|+++..+
T Consensus 70 ~~~~~Pi~llW~~~sdi~Ee 89 (109)
T cd08689 70 GDQPVPVGLLWLRLSDIAEE 89 (109)
T ss_pred CCeecceeeehhhHHHHHHH
Confidence 23556899999999998765
|
This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that |
| >KOG1264 consensus Phospholipase C [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.43 E-value=5.6e-07 Score=104.26 Aligned_cols=89 Identities=26% Similarity=0.399 Sum_probs=77.4
Q ss_pred CCcEEEEEEEEeecCC-----CCCcEEEEEECC------eEEeecCccCCCCCeEe-eEEEEEEecCCCceEEEEEEecC
Q 001987 2 VSTRLYVYVLQGQDLL-----AKDSYVKVQIGK------HKSKSRILKNNSNPVWN-EEFVFRVHNIDDEELVVSVFQHN 69 (985)
Q Consensus 2 ~~~~L~V~V~~Ar~L~-----~~DPyv~v~l~~------~~~kT~v~~~t~nP~wn-E~f~f~v~~~~~~~L~~~V~D~d 69 (985)
..++|.|.|+.||.|+ .+-|||.|.+.+ ..++|.|..|++||+|| |.|.|.|..|.-..|+|.|||.|
T Consensus 1063 ~p~~lsv~vigaRHL~k~gr~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nPe~A~lRF~V~eeD 1142 (1267)
T KOG1264|consen 1063 LPMTLSVKVLGARHLPKLGRSIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNPEFAFLRFVVYEED 1142 (1267)
T ss_pred cceEEEEEEeeccccccCCCCccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCCceEEEEEEEeccc
Confidence 3578999999999999 345999999963 33667778899999999 99999999999999999999999
Q ss_pred CCCCCCCCCCCeeEEEEEeCcccccc
Q 001987 70 DDSGLFGSSGELMGRVRVPVSSIAAE 95 (985)
Q Consensus 70 ~~~~~~~~~d~~lG~~~i~L~~l~~~ 95 (985)
+.+...|||++..|+..+..+
T Consensus 1143 -----mfs~~~FiaqA~yPv~~ik~G 1163 (1267)
T KOG1264|consen 1143 -----MFSDPNFLAQATYPVKAIKSG 1163 (1267)
T ss_pred -----ccCCcceeeeeecchhhhhcc
Confidence 457778999999999999865
|
|
| >PLN02352 phospholipase D epsilon | Back alignment and domain information |
|---|
Probab=98.28 E-value=4.2e-06 Score=100.42 Aligned_cols=115 Identities=10% Similarity=0.172 Sum_probs=87.2
Q ss_pred CeEEEEEEEEeecCCCC----CCC-CCCCcEEEEEECCE-EEEeeeccCCCCCeEeEEEEEEeecCCCCEEEEEEEecCC
Q 001987 535 GWVLTVALVEGVNLASS----EMT-GLSDPYVVFTCNGK-TRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDG 608 (985)
Q Consensus 535 ~g~L~V~v~~a~~L~~~----d~~-g~~DPyv~v~~~~~-~~kT~~~~~tlnP~Wne~f~f~v~~~~~~~L~v~V~D~d~ 608 (985)
.|.|.++|.+|+-+... +.. ...||||.|.+++. ..+| .+.-||+|||.|.+.|.......+.|+|.| +
T Consensus 9 hg~l~~~i~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~~~v~rt---~~~~~p~w~e~f~i~~ah~~~~~~~f~vk~-~- 83 (758)
T PLN02352 9 HGTLEATIFDATPYTPPFPFNCIFLNGKATYVTIKIGNKKVAKT---SHEYDRVWNQTFQILCAHPLDSTITITLKT-K- 83 (758)
T ss_pred ccceEEEEEEeeehhhcccccccccCCCCceEEEEeCCcEEecC---CCCCCCccccceeEEeeeecCCcEEEEEec-C-
Confidence 57999999999843322 111 12399999999864 4577 556699999999999654444789999988 2
Q ss_pred CCCCCCccceEEEEeeccccCcc-cceEEEccccccCCcce-eEEEEEeeec
Q 001987 609 PFDQATSLGHAEINFLKHTSTEL-ADMWVSLEGKLAQSAQS-KVHLRIFLEN 658 (985)
Q Consensus 609 ~~~~dd~lG~~~i~l~~l~~~~~-~~~w~~L~~~~~~~~~g-~l~l~~~ls~ 658 (985)
..+||++.||+.++..+.. .+.|+++.+..+.+..| +||+++.|..
T Consensus 84 ----~~~ig~~~~p~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 131 (758)
T PLN02352 84 ----CSILGRFHIQAHQIVTEASFINGFFPLIMENGKPNPELKLRFMLWFRP 131 (758)
T ss_pred ----CeEEEEEEEEHHHhhCCCcccceEEEcccCCCCCCCCCEEEEEEEEEE
Confidence 3689999999999988765 89999998866555555 8888886543
|
|
| >PF02893 GRAM: GRAM domain; InterPro: IPR004182 The GRAM domain is found in glucosyltransferases, myotubularins and other putative membrane-associated proteins | Back alignment and domain information |
|---|
Probab=98.21 E-value=7.5e-07 Score=75.90 Aligned_cols=60 Identities=32% Similarity=0.535 Sum_probs=46.3
Q ss_pred eecCCCcchhhhhhhhhhh-hccccceeEeeeeEeeeeccccCcce-EEEEecccccccccc
Q 001987 656 LENNNGVETIKEYLTKMEK-EVGKKGRLFLSARIVGFYANLFGNKT-KFFFLWEDIEDIQIL 715 (985)
Q Consensus 656 ls~~~~~~~l~~~l~~lek-~i~~~gr~y~s~~~~~f~snif~~~~-~~~i~~~di~~i~~~ 715 (985)
+..+.++..+.++.|.+.. .+...|+||++.+++||+|+.++..+ ++.|||.||.+|+|.
T Consensus 7 F~lp~~E~li~~~~c~l~~~~~~~~G~LyiT~~~lcF~s~~~~~~~~~~~ipl~~I~~i~k~ 68 (69)
T PF02893_consen 7 FKLPEEERLIEEYSCALFKSKIPVQGRLYITNNYLCFYSNKFGSKTCKFVIPLSDIKSIEKE 68 (69)
T ss_dssp ----TT--EEEEEEETTTEE---EEEEEEEESSEEEEEESSSSS-E-EEEEEGGGEEEEEEE
T ss_pred ccCCCCCeEEEEEEEEEECCccceeeEEEECCCEEEEEECCCCCceEEEEEEhHheeEEEEe
Confidence 4466677777888888888 78888999999999999999999999 999999999999875
|
It is normally about 70 amino acids in length. It is thought to be an intracellular protein-binding or lipid-binding signalling domain, which has an important function in membrane-associated processes. Mutations in the GRAM domain of myotubularins cause a muscle disease, which suggests that the domain is essential for the full function of the enzyme []. Myotubularin-related proteins are a large subfamily of protein tyrosine phosphatases (PTPs) that dephosphorylate D3-phosphorylated inositol lipids [].; PDB: 1M7R_B 1LW3_A 1ZVR_A 1ZSQ_A. |
| >PLN02352 phospholipase D epsilon | Back alignment and domain information |
|---|
Probab=98.18 E-value=1.2e-05 Score=96.61 Aligned_cols=114 Identities=18% Similarity=0.324 Sum_probs=88.5
Q ss_pred CCcEEEEEEEEeecCC-----------CCCcEEEEEECCeE-EeecCccCCCCCeEeeEEEEEEecCCCceEEEEEEecC
Q 001987 2 VSTRLYVYVLQGQDLL-----------AKDSYVKVQIGKHK-SKSRILKNNSNPVWNEEFVFRVHNIDDEELVVSVFQHN 69 (985)
Q Consensus 2 ~~~~L~V~V~~Ar~L~-----------~~DPyv~v~l~~~~-~kT~v~~~t~nP~wnE~f~f~v~~~~~~~L~~~V~D~d 69 (985)
+++.|.++|++|+-+. ..||||.|.+++.+ .|| .+..||.|+|+|.+.+-......+.|.|.|-.
T Consensus 8 lhg~l~~~i~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~~~v~rt---~~~~~p~w~e~f~i~~ah~~~~~~~f~vk~~~ 84 (758)
T PLN02352 8 FHGTLEATIFDATPYTPPFPFNCIFLNGKATYVTIKIGNKKVAKT---SHEYDRVWNQTFQILCAHPLDSTITITLKTKC 84 (758)
T ss_pred cccceEEEEEEeeehhhcccccccccCCCCceEEEEeCCcEEecC---CCCCCCccccceeEEeeeecCCcEEEEEecCC
Confidence 6899999999998443 23999999998755 888 56669999999999984334468999998732
Q ss_pred CCCCCCCCCCCeeEEEEEeCccccccCCCCCCCeEEEeecCCCCCCCCccccEEEEEEEEEecC
Q 001987 70 DDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTNKDCGKILLTISLNGKG 133 (985)
Q Consensus 70 ~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~~G~I~lsl~~~~~~ 133 (985)
.+||++.+|+.++..++. ....|+++. ...+++. . ..+|++++.|.+..
T Consensus 85 ----------~~ig~~~~p~~~~~~g~~--~~~~~~~~~-~~~~~p~-~-~~~~~~~~~~~~~~ 133 (758)
T PLN02352 85 ----------SILGRFHIQAHQIVTEAS--FINGFFPLI-MENGKPN-P-ELKLRFMLWFRPAE 133 (758)
T ss_pred ----------eEEEEEEEEHHHhhCCCc--ccceEEEcc-cCCCCCC-C-CCEEEEEEEEEEhh
Confidence 699999999999987632 378999998 4444432 2 26999999998854
|
|
| >KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.12 E-value=1.5e-06 Score=104.49 Aligned_cols=105 Identities=24% Similarity=0.301 Sum_probs=90.1
Q ss_pred CeEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CEEEEeeeccCCCCCeEeEEEEEEeec---CCCCEEEEEEEec
Q 001987 535 GWVLTVALVEGVNLASSEMTGLSDPYVVFTCN-----GKTRTSSVQLQTCDPQWHDILEFDAME---EPPSVLDVEVFDF 606 (985)
Q Consensus 535 ~g~L~V~v~~a~~L~~~d~~g~~DPyv~v~~~-----~~~~kT~~~~~tlnP~Wne~f~f~v~~---~~~~~L~v~V~D~ 606 (985)
.|+|+|-|..|++|+-..-+...||||+.++- ..++||+++++|.||.|||...+.-.+ .....|.+.||..
T Consensus 1523 ~~~LtImV~H~K~L~~Lqdg~~P~pyVK~YLlPdp~k~sKRKTKvvrkt~~PTfnE~LvY~g~p~~~l~qReLQ~sVls~ 1602 (1639)
T KOG0905|consen 1523 NGTLTIMVMHAKGLALLQDGQDPDPYVKTYLLPDPRKTSKRKTKVVRKTRNPTFNEMLVYDGFPKEILQQRELQVSVLSN 1602 (1639)
T ss_pred CceEEEEhhhhcccccccCCCCCCcceeEEecCCchHhhhhhhccccccCCCchhhheeecCCchhhhhhheeeeeeecc
Confidence 57999999999999766657789999999994 247899999999999999999887221 2346899999999
Q ss_pred CCCCCCCCccceEEEEeeccccCcccceEEEccc
Q 001987 607 DGPFDQATSLGHAEINFLKHTSTELADMWVSLEG 640 (985)
Q Consensus 607 d~~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~~ 640 (985)
+. +..+.++|.+.|+|.++...+....||+|..
T Consensus 1603 ~~-~~en~~lg~v~i~L~~~~l~kE~~~Wy~lg~ 1635 (1639)
T KOG0905|consen 1603 GG-LLENVFLGGVNIPLLKVDLLKESVGWYNLGA 1635 (1639)
T ss_pred cc-eeeeeeeeeeecchhhcchhhhhcceeeccc
Confidence 98 7899999999999999988888889999974
|
|
| >smart00568 GRAM domain in glucosyltransferases, myotubularins and other putative membrane-associated proteins | Back alignment and domain information |
|---|
Probab=98.08 E-value=2.1e-06 Score=71.24 Aligned_cols=55 Identities=25% Similarity=0.355 Sum_probs=47.3
Q ss_pred CcchhhhhhhhhhhhccccceeEeeeeEeeeeccccCcce-EEEEecccccccccc
Q 001987 661 GVETIKEYLTKMEKEVGKKGRLFLSARIVGFYANLFGNKT-KFFFLWEDIEDIQIL 715 (985)
Q Consensus 661 ~~~~l~~~l~~lek~i~~~gr~y~s~~~~~f~snif~~~~-~~~i~~~di~~i~~~ 715 (985)
++..+.+|.|.+.+....+||+|++.+++||+|+.+|+.+ ++.||+.||..|+|.
T Consensus 5 ~E~l~~~~~C~l~~~~~~~G~lyiT~~~l~F~S~~~~~~~~~~~ipl~~I~~i~k~ 60 (61)
T smart00568 5 EEKLIADYSCYLSRDGPVQGRLYISNYRLCFRSDLPGKLTPKVVIPLADITRIEKS 60 (61)
T ss_pred CcEEEEEEEeEECCCccccEEEEEECCEEEEEccCCCCeeEEEEEEHHHeeEEEEC
Confidence 3444556777777667788999999999999999999999 999999999999875
|
|
| >PLN02964 phosphatidylserine decarboxylase | Back alignment and domain information |
|---|
Probab=98.05 E-value=3.7e-06 Score=100.28 Aligned_cols=93 Identities=16% Similarity=0.283 Sum_probs=79.1
Q ss_pred ccCCCeEEEEEEEEeecCCCCCCCCCCCcEE-EEEECCEEEEeeeccCCCCCeEeEEEEEEeecCCCCEEEEEEEecCCC
Q 001987 531 AQGDGWVLTVALVEGVNLASSEMTGLSDPYV-VFTCNGKTRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGP 609 (985)
Q Consensus 531 ~~~~~g~L~V~v~~a~~L~~~d~~g~~DPyv-~v~~~~~~~kT~~~~~tlnP~Wne~f~f~v~~~~~~~L~v~V~D~d~~ 609 (985)
+..-.|.+.+++++|+ ++ ..|||. ++++|.|.+||.+.++|+||+||+...|.+........++.|||+|.
T Consensus 49 ~~~~~~~~~~~~~~~~----~~---~~~~~~~~~~~g~~~f~t~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~- 120 (644)
T PLN02964 49 AEDFSGIALLTLVGAE----MK---FKDKWLACVSFGEQTFRTETSDSTDKPVWNSEKKLLLEKNGPHLARISVFETNR- 120 (644)
T ss_pred cccccCeEEEEeehhh----hc---cCCcEEEEEEecceeeeeccccccCCcccchhhceEeccCCcceEEEEEEecCC-
Confidence 3345789999999998 44 468885 56779999999999999999999999999877777778999999999
Q ss_pred CCCCCccceEEEEeeccccCcc
Q 001987 610 FDQATSLGHAEINFLKHTSTEL 631 (985)
Q Consensus 610 ~~~dd~lG~~~i~l~~l~~~~~ 631 (985)
+++++++|.++++|..+...+.
T Consensus 121 ~s~n~lv~~~e~~~t~f~~kqi 142 (644)
T PLN02964 121 LSKNTLVGYCELDLFDFVTQEP 142 (644)
T ss_pred CCHHHhhhheeecHhhccHHHH
Confidence 8999999999999987655443
|
|
| >KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.01 E-value=3.9e-06 Score=101.10 Aligned_cols=98 Identities=26% Similarity=0.496 Sum_probs=84.4
Q ss_pred CcEEEEEEEEeecCC------CCCcEEEEEECC-----eEEeecCccCCCCCeEeeEEEEE-Ee--cCCCceEEEEEEec
Q 001987 3 STRLYVYVLQGQDLL------AKDSYVKVQIGK-----HKSKSRILKNNSNPVWNEEFVFR-VH--NIDDEELVVSVFQH 68 (985)
Q Consensus 3 ~~~L~V~V~~Ar~L~------~~DPyv~v~l~~-----~~~kT~v~~~t~nP~wnE~f~f~-v~--~~~~~~L~~~V~D~ 68 (985)
+++|.|-|.-|++|+ -+||||+.++.+ .+.||+++++|.||.|||.+.+. ++ ....+.|.++||..
T Consensus 1523 ~~~LtImV~H~K~L~~Lqdg~~P~pyVK~YLlPdp~k~sKRKTKvvrkt~~PTfnE~LvY~g~p~~~l~qReLQ~sVls~ 1602 (1639)
T KOG0905|consen 1523 NGTLTIMVMHAKGLALLQDGQDPDPYVKTYLLPDPRKTSKRKTKVVRKTRNPTFNEMLVYDGFPKEILQQRELQVSVLSN 1602 (1639)
T ss_pred CceEEEEhhhhcccccccCCCCCCcceeEEecCCchHhhhhhhccccccCCCchhhheeecCCchhhhhhheeeeeeecc
Confidence 578999999999996 689999999974 35899999999999999999988 54 46679999999999
Q ss_pred CCCCCCCCCCCCeeEEEEEeCccccccCCCCCCCeEEEee
Q 001987 69 NDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLE 108 (985)
Q Consensus 69 d~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~ 108 (985)
+ . ...+.|+|.+.|||.++....+ ...||+|.
T Consensus 1603 ~---~--~~en~~lg~v~i~L~~~~l~kE---~~~Wy~lg 1634 (1639)
T KOG0905|consen 1603 G---G--LLENVFLGGVNIPLLKVDLLKE---SVGWYNLG 1634 (1639)
T ss_pred c---c--eeeeeeeeeeecchhhcchhhh---hcceeecc
Confidence 8 3 4678999999999999987632 45899997
|
|
| >cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins | Back alignment and domain information |
|---|
Probab=97.70 E-value=7.2e-05 Score=69.56 Aligned_cols=100 Identities=21% Similarity=0.436 Sum_probs=77.2
Q ss_pred EEEEEEEeecCC-------------------CCCcEEEEEEC----CeEEeecCccCCCCCeEeeEEEEEEe----c---
Q 001987 6 LYVYVLQGQDLL-------------------AKDSYVKVQIG----KHKSKSRILKNNSNPVWNEEFVFRVH----N--- 55 (985)
Q Consensus 6 L~V~V~~Ar~L~-------------------~~DPyv~v~l~----~~~~kT~v~~~t~nP~wnE~f~f~v~----~--- 55 (985)
|.|.|++|-+|. .-|+||.+.+. ++..+|+++-++..|.|+..+.|.++ .
T Consensus 1 lsv~I~RA~GLqaAA~~la~~~~~l~y~a~VGVN~yv~i~lSFl~~~e~r~TrtVArSFcPeF~Hh~Efpc~lv~~~~~G 80 (143)
T cd08683 1 LSVQIHRASGLQAAARALAEQDPSLQYSATVGVNSYVTIHLSFLPEKELRRTRTVARSFCPEFNHHVEFPCNLVVQRNSG 80 (143)
T ss_pred CeEEeehhhhHHHHHHHHhhhCcccccceecccceEEEEEeccCCCCceeeccchhhhcCCCccceEEEecccEEEcCCC
Confidence 468888998887 46899999964 45699999999999999999999864 1
Q ss_pred --------CCCceEEEEEEecCCCCCC-----CCCCCCeeEEEEEeCccccccCCCCCCCeEEEe
Q 001987 56 --------IDDEELVVSVFQHNDDSGL-----FGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSL 107 (985)
Q Consensus 56 --------~~~~~L~~~V~D~d~~~~~-----~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L 107 (985)
.....+.|+||+..+.++. ...+|-.||.+.||+.++.... .-...||++
T Consensus 81 e~~sLAElLe~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl~~Ll~~r--sGitGW~pi 143 (143)
T cd08683 81 EAISLAELLESAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPLRDLLTKR--SGITGWYPI 143 (143)
T ss_pred ccccHHHHhhcceEEeeeeecCCccccceeccCcCCcEEEEEEEeeHHHHhhcc--cCccccccC
Confidence 2346899999998854320 1235669999999999998753 235679875
|
C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc |
| >KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.68 E-value=4.4e-05 Score=81.52 Aligned_cols=87 Identities=24% Similarity=0.319 Sum_probs=71.6
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEEC---C--EEEEeeeccCCCCCeEeEEEEEEeec--CCCCEEEEEEEecCCC
Q 001987 537 VLTVALVEGVNLASSEMTGLSDPYVVFTCN---G--KTRTSSVQLQTCDPQWHDILEFDAME--EPPSVLDVEVFDFDGP 609 (985)
Q Consensus 537 ~L~V~v~~a~~L~~~d~~g~~DPyv~v~~~---~--~~~kT~~~~~tlnP~Wne~f~f~v~~--~~~~~L~v~V~D~d~~ 609 (985)
-|.|+++++..|...|.+|.+||||..++. + -+.+|.+.++|+||.+|++|.|.+.. .....+.|.|||.|.
T Consensus 234 ~l~vt~iRc~~l~ssDsng~sDpyvS~~l~pdv~~~fkkKt~~~K~t~~p~fd~~~~~~i~pgdLa~~kv~lsvgd~~~- 312 (362)
T KOG1013|consen 234 GLIVTIIRCSHLASSDSNGYSDPYVSQRLSPDVGKKFKKKTQQKKKTLNPEFDEEFFYDIGPGDLAYKKVALSVGDYDI- 312 (362)
T ss_pred ceEEEEEEeeeeeccccCCCCCccceeecCCCcchhhcccCcchhccCCccccccccccCCccchhcceEEEeecccCC-
Confidence 468999999999999999999999999984 2 35688899999999999999998521 234589999999997
Q ss_pred CCCCCccceEEEEee
Q 001987 610 FDQATSLGHAEINFL 624 (985)
Q Consensus 610 ~~~dd~lG~~~i~l~ 624 (985)
-...|++|-...-+.
T Consensus 313 G~s~d~~GG~~~g~~ 327 (362)
T KOG1013|consen 313 GKSNDSIGGSMLGGY 327 (362)
T ss_pred CcCccCCCccccccc
Confidence 367899987655443
|
|
| >KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=97.50 E-value=4.6e-05 Score=91.44 Aligned_cols=83 Identities=25% Similarity=0.510 Sum_probs=73.2
Q ss_pred cEEEEEEEEeecCC------CCCcEEEEEECCeE--EeecCccCCCCCeEeeEEEEEEecCCCceEEEEEEecCCCCCCC
Q 001987 4 TRLYVYVLQGQDLL------AKDSYVKVQIGKHK--SKSRILKNNSNPVWNEEFVFRVHNIDDEELVVSVFQHNDDSGLF 75 (985)
Q Consensus 4 ~~L~V~V~~Ar~L~------~~DPyv~v~l~~~~--~kT~v~~~t~nP~wnE~f~f~v~~~~~~~L~~~V~D~d~~~~~~ 75 (985)
..++|+|++|-+|. .+||||+|.+++.. -++..+.+|+||+|++.|.+....+....|.++|||+| .
T Consensus 613 ~LvrVyvv~A~~L~p~D~ng~adpYv~l~lGk~~~~d~~~yip~tlnPVfgkmfel~~~lp~ek~l~v~vyd~D-----~ 687 (1105)
T KOG1326|consen 613 CLVRVYVVEAFSLQPSDGNGDADPYVKLLLGKKRTLDRAHYIPNTLNPVFGKMFELECLLPFEKDLIVEVYDHD-----L 687 (1105)
T ss_pred eeEEEEEEEeeeccccCCCCCcCceeeeeeccchhhhhhhcCcCCCCcHHHHHHHhhcccchhhcceeEEEEee-----c
Confidence 35689999999998 79999999999866 67888999999999999999876788899999999999 3
Q ss_pred CCCCCeeEEEEEeCcc
Q 001987 76 GSSGELMGRVRVPVSS 91 (985)
Q Consensus 76 ~~~d~~lG~~~i~L~~ 91 (985)
.++|+.||+..++|..
T Consensus 688 ~~~d~~iget~iDLEn 703 (1105)
T KOG1326|consen 688 EAQDEKIGETTIDLEN 703 (1105)
T ss_pred ccccchhhceehhhhh
Confidence 6789999999988653
|
|
| >KOG1327 consensus Copine [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.00065 Score=78.27 Aligned_cols=139 Identities=16% Similarity=0.229 Sum_probs=99.9
Q ss_pred CCCcEEEEEEC-------------------CeEEeecCccCCCCCeEeeEEEEEEecCCCceEEEEEEecCCCCCCCCCC
Q 001987 18 AKDSYVKVQIG-------------------KHKSKSRILKNNSNPVWNEEFVFRVHNIDDEELVVSVFQHNDDSGLFGSS 78 (985)
Q Consensus 18 ~~DPyv~v~l~-------------------~~~~kT~v~~~t~nP~wnE~f~f~v~~~~~~~L~~~V~D~d~~~~~~~~~ 78 (985)
+.||.|.+... .+..+|+++.+.+||.|-+.|.+.+.....+.|++.++|.+.... ....
T Consensus 10 ~~~~~c~~~~~~s~~~~~~~~~l~~~~~~~~e~~rte~i~~~~~p~f~~~~~l~y~fE~vQ~l~~~~~~~~~~~~-~l~~ 88 (529)
T KOG1327|consen 10 KSDPICKLFYLTSGGAWLETLELTKEDDVWEEVGRTEVIRNVLNPFFTKKFLLQYRFEKVQLLRFEVYDIDSRTP-DLSS 88 (529)
T ss_pred ccCceeeeeccCCCccccccccccccccccccccceeeeeccCCccceeeechhheeeeeeeEEEEEeecCCccC-Ccch
Confidence 66777776653 234699999999999999999998778889999999999884311 1457
Q ss_pred CCeeEEEEEeCccccccCCCCCCCeEEEeecCCCCCCCCccccEEEEEEEEEecCCeeeEEEEeeeccCCCCCCCCCCCC
Q 001987 79 GELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTNKDCGKILLTISLNGKGHNLSSNRLLYLHSNVSSNESKELED 158 (985)
Q Consensus 79 d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~~G~I~lsl~~~~~~~~l~v~v~~~~a~~L~~~d~~g~sd 158 (985)
++|+|++.+.++.+..... ...-+.+. +. + ....|.|.+.++-.. +...+.....++++|.+.|..+++|
T Consensus 89 ~dflg~~~c~l~~ivs~~~---~~~~l~~~-~~--~--~~~~g~iti~aee~~--~~~~~~~~~~~~~~ld~kd~f~ksd 158 (529)
T KOG1327|consen 89 ADFLGTAECTLSQIVSSSG---LTGPLLLK-PG--K--NAGSGTITISAEEDE--SDNDVVQFSFRAKNLDPKDFFSKSD 158 (529)
T ss_pred hcccceeeeehhhhhhhhh---hhhhhhcc-cC--c--cCCcccEEEEeeccc--ccCceeeeeeeeeecCcccccccCC
Confidence 8999999999999886522 11112222 11 1 334677777766533 3334555555699999999999999
Q ss_pred CeEEEEEcC
Q 001987 159 PCVLSHDVS 167 (985)
Q Consensus 159 P~vkv~l~~ 167 (985)
||..++-..
T Consensus 159 ~~l~~~~~~ 167 (529)
T KOG1327|consen 159 PYLEFYKRV 167 (529)
T ss_pred cceEEEEec
Confidence 999987664
|
|
| >cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus) | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.00018 Score=62.18 Aligned_cols=82 Identities=21% Similarity=0.425 Sum_probs=65.2
Q ss_pred EEEEEEeecCC-----CCCc--EEE--EEECC-eEEeecCccCCCCCeEeeEEEEEEe--cCCCceEEEEEEecCCCCCC
Q 001987 7 YVYVLQGQDLL-----AKDS--YVK--VQIGK-HKSKSRILKNNSNPVWNEEFVFRVH--NIDDEELVVSVFQHNDDSGL 74 (985)
Q Consensus 7 ~V~V~~Ar~L~-----~~DP--yv~--v~l~~-~~~kT~v~~~t~nP~wnE~f~f~v~--~~~~~~L~~~V~D~d~~~~~ 74 (985)
-++|++|+||. .-+| |++ +.+.+ -..||.+.+...||+|.|+|.|.+. ...+-.|.|.|+..-
T Consensus 2 witv~~c~d~s~~~~~~e~~~i~ikg~~tl~kpv~~KsS~rrgs~d~~f~ETFVFqi~l~qL~~V~L~fsv~~~~----- 76 (103)
T cd08684 2 WITVLKCKDLSWPSSCGENPTIYIKGILTLPKPVHFKSSAKEGSNDIEFMETFVFAIKLQNLQTVRLVFKIQTQT----- 76 (103)
T ss_pred EEEEEEecccccccccCcCCeeEEEEEEecCCCccccchhhcCCCChhHHHHHHHHHHHhhccceEEEEEeeccC-----
Confidence 47899999998 2344 444 33333 4589999999999999999999965 678889999999844
Q ss_pred CCCCCCeeEEEEEeCcccccc
Q 001987 75 FGSSGELMGRVRVPVSSIAAE 95 (985)
Q Consensus 75 ~~~~d~~lG~~~i~L~~l~~~ 95 (985)
.+...||.+.+.|+++-.+
T Consensus 77 --~RKe~iG~~sL~l~s~gee 95 (103)
T cd08684 77 --PRKRTIGECSLSLRTLSTQ 95 (103)
T ss_pred --CccceeeEEEeecccCCHH
Confidence 4789999999999988754
|
Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos |
| >PLN02964 phosphatidylserine decarboxylase | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.00044 Score=82.93 Aligned_cols=88 Identities=19% Similarity=0.322 Sum_probs=73.8
Q ss_pred CCcEEEEEEEEeecCCCCCcEEE-EEECCeEEeecCccCCCCCeEeeEEEEEEecCCCceEEEEEEecCCCCCCCCCCCC
Q 001987 2 VSTRLYVYVLQGQDLLAKDSYVK-VQIGKHKSKSRILKNNSNPVWNEEFVFRVHNIDDEELVVSVFQHNDDSGLFGSSGE 80 (985)
Q Consensus 2 ~~~~L~V~V~~Ar~L~~~DPyv~-v~l~~~~~kT~v~~~t~nP~wnE~f~f~v~~~~~~~L~~~V~D~d~~~~~~~~~d~ 80 (985)
+.+...++|++|+ +...|||.. ++++.+.+||.+.++|+||+||+...|.+........+|.|||.+ + .+.++
T Consensus 52 ~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~f~t~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~---~--~s~n~ 125 (644)
T PLN02964 52 FSGIALLTLVGAE-MKFKDKWLACVSFGEQTFRTETSDSTDKPVWNSEKKLLLEKNGPHLARISVFETN---R--LSKNT 125 (644)
T ss_pred ccCeEEEEeehhh-hccCCcEEEEEEecceeeeeccccccCCcccchhhceEeccCCcceEEEEEEecC---C--CCHHH
Confidence 4578889999998 336788655 667788899999999999999999999986555556799999999 5 57999
Q ss_pred eeEEEEEeCcccccc
Q 001987 81 LMGRVRVPVSSIAAE 95 (985)
Q Consensus 81 ~lG~~~i~L~~l~~~ 95 (985)
.+|.+.++|.++...
T Consensus 126 lv~~~e~~~t~f~~k 140 (644)
T PLN02964 126 LVGYCELDLFDFVTQ 140 (644)
T ss_pred hhhheeecHhhccHH
Confidence 999999999888765
|
|
| >cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.00037 Score=64.95 Aligned_cols=100 Identities=16% Similarity=0.213 Sum_probs=72.3
Q ss_pred EEEEEEeecCCCCC-------C------CCCCCcEEEEEE----CCEEEEeeeccCCCCCeEeEEEEEEee--------c
Q 001987 539 TVALVEGVNLASSE-------M------TGLSDPYVVFTC----NGKTRTSSVQLQTCDPQWHDILEFDAM--------E 593 (985)
Q Consensus 539 ~V~v~~a~~L~~~d-------~------~g~~DPyv~v~~----~~~~~kT~~~~~tlnP~Wne~f~f~v~--------~ 593 (985)
.|.|++|.+|++.- . .=..++||.+.+ ++..++|+++-++..|.|+..++|.+. .
T Consensus 2 sv~I~RA~GLqaAA~~la~~~~~l~y~a~VGVN~yv~i~lSFl~~~e~r~TrtVArSFcPeF~Hh~Efpc~lv~~~~~Ge 81 (143)
T cd08683 2 SVQIHRASGLQAAARALAEQDPSLQYSATVGVNSYVTIHLSFLPEKELRRTRTVARSFCPEFNHHVEFPCNLVVQRNSGE 81 (143)
T ss_pred eEEeehhhhHHHHHHHHhhhCcccccceecccceEEEEEeccCCCCceeeccchhhhcCCCccceEEEecccEEEcCCCc
Confidence 46666666665421 0 112589999996 367899999999999999999999863 0
Q ss_pred -------CCCCEEEEEEEecCCCC---------CCCCccceEEEEeecccc-CcccceEEEc
Q 001987 594 -------EPPSVLDVEVFDFDGPF---------DQATSLGHAEINFLKHTS-TELADMWVSL 638 (985)
Q Consensus 594 -------~~~~~L~v~V~D~d~~~---------~~dd~lG~~~i~l~~l~~-~~~~~~w~~L 638 (985)
.....+.++||+.+... .+|-.||.+.||+.++.. ......||++
T Consensus 82 ~~sLAElLe~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl~~Ll~~rsGitGW~pi 143 (143)
T cd08683 82 AISLAELLESAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPLRDLLTKRSGITGWYPI 143 (143)
T ss_pred cccHHHHhhcceEEeeeeecCCccccceeccCcCCcEEEEEEEeeHHHHhhcccCccccccC
Confidence 11347999999987421 234578999999999654 4457889885
|
C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc |
| >KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.00089 Score=73.41 Aligned_cols=133 Identities=14% Similarity=0.135 Sum_probs=102.0
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CEEEEeeeccCCCCCeEeEEEEEEeecCC-----------CCEEE
Q 001987 537 VLTVALVEGVNLASSEMTGLSDPYVVFTCN-----GKTRTSSVQLQTCDPQWHDILEFDAMEEP-----------PSVLD 600 (985)
Q Consensus 537 ~L~V~v~~a~~L~~~d~~g~~DPyv~v~~~-----~~~~kT~~~~~tlnP~Wne~f~f~v~~~~-----------~~~L~ 600 (985)
.|.+.|+++.+++.....--.|-|+++.+. .++.+|.+++.|..|.|+|.|.+.+...+ ..-++
T Consensus 368 elel~ivrg~~~pvp~gp~hld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fklni~rg~~~nr~fqR~fkr~g~k 447 (523)
T KOG3837|consen 368 ELELAIVRGQKNPVPGGPMHLDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLNIRRGPGLNREFQRRFKRLGKK 447 (523)
T ss_pred HhHHHHhhcccCCCCCCchhHHhhhcccccccccccccCccceeeCCCCCCcccceeeeccCCCcccHHHHHHHHhcCee
Confidence 677888899888865433345688888773 46678889999999999999999964322 23599
Q ss_pred EEEEecCCCCCCCCccceEEEEeeccccCcccceEEEccccccCCcceeEEEEEeeecCCCcchhhhhhh
Q 001987 601 VEVFDFDGPFDQATSLGHAEINFLKHTSTELADMWVSLEGKLAQSAQSKVHLRIFLENNNGVETIKEYLT 670 (985)
Q Consensus 601 v~V~D~d~~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~g~l~l~~~ls~~~~~~~l~~~l~ 670 (985)
|+||.+..-+.+|.++|.+.|.|..+...-.....++|.+..+ ..+|+|.+++-+..+-+...+++...
T Consensus 448 feifhkggf~rSdkl~gt~nikle~Len~cei~e~~~l~DGRK-~vGGkLevKvRiR~Pi~~~~~qhite 516 (523)
T KOG3837|consen 448 FEIFHKGGFNRSDKLTGTGNIKLEILENMCEICEYLPLKDGRK-AVGGKLEVKVRIRQPIGDAKAQHITE 516 (523)
T ss_pred EEEeeccccccccceeceeeeeehhhhcccchhhceecccccc-ccCCeeEEEEEEecccchhHHHHHHh
Confidence 9999998744678899999999998877766777888876333 46799999999888877666555543
|
|
| >KOG1327 consensus Copine [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.0013 Score=75.92 Aligned_cols=86 Identities=19% Similarity=0.335 Sum_probs=69.8
Q ss_pred EEEEeecCCCCCCCCCCCcEEEEEEC------CEEEEeeeccCCCCCeEeEEEEEEe----ecCCCCEEEEEEEecCCCC
Q 001987 541 ALVEGVNLASSEMTGLSDPYVVFTCN------GKTRTSSVQLQTCDPQWHDILEFDA----MEEPPSVLDVEVFDFDGPF 610 (985)
Q Consensus 541 ~v~~a~~L~~~d~~g~~DPyv~v~~~------~~~~kT~~~~~tlnP~Wne~f~f~v----~~~~~~~L~v~V~D~d~~~ 610 (985)
-.++|++|..+|..+++|||..++-- ...++|.++++++||.|-. |.+.. ..++...+.+.+||+|. .
T Consensus 141 ~~~~~~~ld~kd~f~ksd~~l~~~~~~~d~s~~~~~~tEv~~n~l~p~w~~-~~i~~~~l~~~~~~~~~~i~~~d~~~-~ 218 (529)
T KOG1327|consen 141 FSFRAKNLDPKDFFSKSDPYLEFYKRVDDGSTQMLYRTEVVKNTLNPQWAP-FSISLQSLCSKDGNRPIQIECYDYDS-N 218 (529)
T ss_pred eeeeeeecCcccccccCCcceEEEEecCCCceeeccccceeccCCCCcccc-cccchhhhcccCCCCceEEEEeccCC-C
Confidence 34568999999999999999988752 1357999999999999963 33332 23556789999999998 5
Q ss_pred CCCCccceEEEEeecccc
Q 001987 611 DQATSLGHAEINFLKHTS 628 (985)
Q Consensus 611 ~~dd~lG~~~i~l~~l~~ 628 (985)
+++++||.+..++..+..
T Consensus 219 ~~~~~ig~~~tt~~~~~~ 236 (529)
T KOG1327|consen 219 GKHDLIGKFQTTLSELQE 236 (529)
T ss_pred CCcCceeEecccHHHhcc
Confidence 889999999999999865
|
|
| >KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.00089 Score=72.96 Aligned_cols=107 Identities=22% Similarity=0.316 Sum_probs=87.9
Q ss_pred CCCeEEEEEEEEeecCCCCCC-CCCCCcEEEEEEC--CE---EEEeeeccCCCCCeEeEEEEEEeecCCCCEEEEEEEe-
Q 001987 533 GDGWVLTVALVEGVNLASSEM-TGLSDPYVVFTCN--GK---TRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFD- 605 (985)
Q Consensus 533 ~~~g~L~V~v~~a~~L~~~d~-~g~~DPyv~v~~~--~~---~~kT~~~~~tlnP~Wne~f~f~v~~~~~~~L~v~V~D- 605 (985)
...|.|.|.|++|++|..+-- ...++|||+|++- +. +.+|+...+|+.|.+-+...|. -.++...|.++||-
T Consensus 266 d~~g~l~vEii~ar~l~~k~~~k~~~apyVkVYlL~~g~c~ak~ktk~A~kT~~plyqq~l~f~-~sp~~k~Lq~tv~gd 344 (405)
T KOG2060|consen 266 DSKGDLEVEIIRARGLVVKPGSKSLPAPYVKVYLLENGFCIAKKKTKSARKTLDPLYQQQLSFD-QSPPGKYLQGTVWGD 344 (405)
T ss_pred cccCceeEEEEecccccccCCcccccCceeEEEEcCCCceecccccccccccCchhhhhhhhhc-cCCCccEEEEEEecc
Confidence 346789999999999987653 3378999999994 22 4688899999999998899988 67778899999985
Q ss_pred cCCCCCCCCccceEEEEeeccccCc-ccceEEEcccc
Q 001987 606 FDGPFDQATSLGHAEINFLKHTSTE-LADMWVSLEGK 641 (985)
Q Consensus 606 ~d~~~~~dd~lG~~~i~l~~l~~~~-~~~~w~~L~~~ 641 (985)
+.+ ..++.|+|.+.|-+.++.... ....||+|-+.
T Consensus 345 ygR-md~k~fmg~aqi~l~eL~ls~~~~igwyKlfgs 380 (405)
T KOG2060|consen 345 YGR-MDHKSFMGVAQIMLDELNLSSSPVIGWYKLFGS 380 (405)
T ss_pred ccc-cchHHHhhHHHHHhhhhccccccceeeeeccCC
Confidence 444 567789999999999987766 77889999874
|
|
| >KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.0012 Score=71.91 Aligned_cols=103 Identities=17% Similarity=0.295 Sum_probs=83.7
Q ss_pred CcEEEEEEEEeecCC-------CCCcEEEEEECC-----eEEeecCccCCCCCeEeeEEEEEEecCCCceEEEEEEecCC
Q 001987 3 STRLYVYVLQGQDLL-------AKDSYVKVQIGK-----HKSKSRILKNNSNPVWNEEFVFRVHNIDDEELVVSVFQHND 70 (985)
Q Consensus 3 ~~~L~V~V~~Ar~L~-------~~DPyv~v~l~~-----~~~kT~v~~~t~nP~wnE~f~f~v~~~~~~~L~~~V~D~d~ 70 (985)
.+.|.|-|++|++|. .++|||+|+++. .+.+|+...+|++|.+-+...|+- .+....|.+.||-.-.
T Consensus 268 ~g~l~vEii~ar~l~~k~~~k~~~apyVkVYlL~~g~c~ak~ktk~A~kT~~plyqq~l~f~~-sp~~k~Lq~tv~gdyg 346 (405)
T KOG2060|consen 268 KGDLEVEIIRARGLVVKPGSKSLPAPYVKVYLLENGFCIAKKKTKSARKTLDPLYQQQLSFDQ-SPPGKYLQGTVWGDYG 346 (405)
T ss_pred cCceeEEEEecccccccCCcccccCceeEEEEcCCCceecccccccccccCchhhhhhhhhcc-CCCccEEEEEEecccc
Confidence 357899999999998 689999999974 358999999999999999999886 5788899999985331
Q ss_pred CCCCCCCCCCeeEEEEEeCccccccCCCCCCCeEEEeecCCC
Q 001987 71 DSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKT 112 (985)
Q Consensus 71 ~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~~~~~ 112 (985)
+ +..+.|+|-+.+-+.++.... .+...||+|-....
T Consensus 347 --R--md~k~fmg~aqi~l~eL~ls~--~~~igwyKlfgsss 382 (405)
T KOG2060|consen 347 --R--MDHKSFMGVAQIMLDELNLSS--SPVIGWYKLFGSSS 382 (405)
T ss_pred --c--cchHHHhhHHHHHhhhhcccc--ccceeeeeccCCcc
Confidence 3 456779999999999998763 36778999984443
|
|
| >KOG1265 consensus Phospholipase C [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.015 Score=69.63 Aligned_cols=85 Identities=33% Similarity=0.554 Sum_probs=69.7
Q ss_pred CCcEEEEEEEEeecCC--CCCcEEEEEECC-------eEEeecCcc-CCCCCeEeeE-EEEE-EecCCCceEEEEEEecC
Q 001987 2 VSTRLYVYVLQGQDLL--AKDSYVKVQIGK-------HKSKSRILK-NNSNPVWNEE-FVFR-VHNIDDEELVVSVFQHN 69 (985)
Q Consensus 2 ~~~~L~V~V~~Ar~L~--~~DPyv~v~l~~-------~~~kT~v~~-~t~nP~wnE~-f~f~-v~~~~~~~L~~~V~D~d 69 (985)
+-.+|.|+||++.-|. +...||.|.+-+ ..+||++.. |+.||+|+|+ |.|. |--+.-..|+|.||+.+
T Consensus 701 IA~t~sV~VISgqFLSdrkvgtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpeLA~lRiavyeEg 780 (1189)
T KOG1265|consen 701 IAATLSVTVISGQFLSDRKVGTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPELASLRIAVYEEG 780 (1189)
T ss_pred EEeeEEEEEEeeeeccccccCceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecccchhheeeeeeccC
Confidence 3468999999999998 788999999842 347888765 4899999965 8998 43577789999999988
Q ss_pred CCCCCCCCCCCeeEEEEEeCcccccc
Q 001987 70 DDSGLFGSSGELMGRVRVPVSSIAAE 95 (985)
Q Consensus 70 ~~~~~~~~~d~~lG~~~i~L~~l~~~ 95 (985)
. .|||+=.+|+..+..+
T Consensus 781 ---g------K~ig~RIlpvd~l~~G 797 (1189)
T KOG1265|consen 781 ---G------KFIGQRILPVDGLNAG 797 (1189)
T ss_pred ---C------ceeeeeccchhcccCc
Confidence 2 6999999999998764
|
|
| >KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.93 E-value=0.0055 Score=67.42 Aligned_cols=115 Identities=17% Similarity=0.336 Sum_probs=86.0
Q ss_pred EEEEEEEEeecCC------CCCcEEEEEEC-----CeEEeecCccCCCCCeEeeEEEEEEec-C----------CCceEE
Q 001987 5 RLYVYVLQGQDLL------AKDSYVKVQIG-----KHKSKSRILKNNSNPVWNEEFVFRVHN-I----------DDEELV 62 (985)
Q Consensus 5 ~L~V~V~~Ar~L~------~~DPyv~v~l~-----~~~~kT~v~~~t~nP~wnE~f~f~v~~-~----------~~~~L~ 62 (985)
.|.+.|+++++++ ..|-||++.+- .++.+|.++++|.+|.|+|.|.+.+.. + ....+.
T Consensus 368 elel~ivrg~~~pvp~gp~hld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fklni~rg~~~nr~fqR~fkr~g~k 447 (523)
T KOG3837|consen 368 ELELAIVRGQKNPVPGGPMHLDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLNIRRGPGLNREFQRRFKRLGKK 447 (523)
T ss_pred HhHHHHhhcccCCCCCCchhHHhhhcccccccccccccCccceeeCCCCCCcccceeeeccCCCcccHHHHHHHHhcCee
Confidence 4556677787777 35778888773 366899999999999999999999842 1 125689
Q ss_pred EEEEecCCCCCCCCCCCCeeEEEEEeCccccccCCCCCCCeEEEeecCCCCCCCCccccEEEEEEEEEe
Q 001987 63 VSVFQHNDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTNKDCGKILLTISLNG 131 (985)
Q Consensus 63 ~~V~D~d~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~~G~I~lsl~~~~ 131 (985)
|+||+.. .| ..+|.++|.+.+.|..|... ......++|.+.+ ....|.|.+.+..-.
T Consensus 448 feifhkg---gf-~rSdkl~gt~nikle~Len~---cei~e~~~l~DGR-----K~vGGkLevKvRiR~ 504 (523)
T KOG3837|consen 448 FEIFHKG---GF-NRSDKLTGTGNIKLEILENM---CEICEYLPLKDGR-----KAVGGKLEVKVRIRQ 504 (523)
T ss_pred EEEeecc---cc-ccccceeceeeeeehhhhcc---cchhhceeccccc-----cccCCeeEEEEEEec
Confidence 9999999 64 67899999999998888754 2234557776333 346788888887743
|
|
| >KOG1265 consensus Phospholipase C [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.028 Score=67.33 Aligned_cols=109 Identities=17% Similarity=0.214 Sum_probs=80.4
Q ss_pred CCeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-------EEEEeeec-cCCCCCeEe-EEEEEE-eecCCCCEEEEEE
Q 001987 534 DGWVLTVALVEGVNLASSEMTGLSDPYVVFTCNG-------KTRTSSVQ-LQTCDPQWH-DILEFD-AMEEPPSVLDVEV 603 (985)
Q Consensus 534 ~~g~L~V~v~~a~~L~~~d~~g~~DPyv~v~~~~-------~~~kT~~~-~~tlnP~Wn-e~f~f~-v~~~~~~~L~v~V 603 (985)
..+.+.|+||+|.=|..++ ..-||.|.+-| +.++|+++ .+++||+|+ |.|.|. |.-+.-..|+|.|
T Consensus 701 IA~t~sV~VISgqFLSdrk----vgtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpeLA~lRiav 776 (1189)
T KOG1265|consen 701 IAATLSVTVISGQFLSDRK----VGTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPELASLRIAV 776 (1189)
T ss_pred EEeeEEEEEEeeeeccccc----cCceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecccchhheeeee
Confidence 3578999999999998776 34899998842 45788874 679999999 578998 3445566999999
Q ss_pred EecCCCCCCCCccceEEEEeeccccCcccceEEEccccccCCcc-eeEEEEE
Q 001987 604 FDFDGPFDQATSLGHAEINFLKHTSTELADMWVSLEGKLAQSAQ-SKVHLRI 654 (985)
Q Consensus 604 ~D~d~~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~-g~l~l~~ 654 (985)
|+... .+||+-.+|+.-+..+.. .+.|.....+... ..|.+.+
T Consensus 777 yeEgg-----K~ig~RIlpvd~l~~GYr---hv~LRse~Nqpl~lp~Lfv~i 820 (1189)
T KOG1265|consen 777 YEEGG-----KFIGQRILPVDGLNAGYR---HVCLRSESNQPLTLPALFVYI 820 (1189)
T ss_pred eccCC-----ceeeeeccchhcccCcce---eEEecCCCCCccccceeEEEE
Confidence 99664 589999999999888763 4567664444322 2344444
|
|
| >cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.081 Score=52.73 Aligned_cols=101 Identities=16% Similarity=0.325 Sum_probs=69.7
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEE--CCEEE----EeeeccCCCCCeEeEEEEEEee--c-CCCCEEEEEEEecC
Q 001987 537 VLTVALVEGVNLASSEMTGLSDPYVVFTC--NGKTR----TSSVQLQTCDPQWHDILEFDAM--E-EPPSVLDVEVFDFD 607 (985)
Q Consensus 537 ~L~V~v~~a~~L~~~d~~g~~DPyv~v~~--~~~~~----kT~~~~~tlnP~Wne~f~f~v~--~-~~~~~L~v~V~D~d 607 (985)
.++|+|+.|.++...+ .+|-||.+.+ |++.. .|+.+.- .+|.|||.++|++. + +....|.|+||+..
T Consensus 9 ~~~v~i~~~~~~~~~~---~~~l~V~v~l~~g~~~L~~pv~T~~v~~-~~~~WnEwL~fpI~i~dLPr~ArL~iti~~~~ 84 (158)
T cd08398 9 NLRIKILCATYVNVND---IDKIYVRTGIYHGGEPLCDNVNTQRVPC-SNPRWNEWLDYDIYIPDLPRSARLCLSICSVK 84 (158)
T ss_pred CeEEEEEeeccCCCCC---cCeEEEEEEEEECCEEccCeeEecccCC-CCCccceeEEcccchhcCChhheEEEEEEEEe
Confidence 5789999999998754 5788888755 55433 3443433 68999999999862 2 34569999999976
Q ss_pred CCCC---CCCccceEEEEeeccccCcccceEEEccccccCCcceeEEEEEee
Q 001987 608 GPFD---QATSLGHAEINFLKHTSTELADMWVSLEGKLAQSAQSKVHLRIFL 656 (985)
Q Consensus 608 ~~~~---~dd~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~g~l~l~~~l 656 (985)
..-+ ..-.||.+.++|-+-.. .-.+|...|.+|.
T Consensus 85 ~~~~~k~~~~~iG~~ni~LFd~~~---------------~Lr~G~~~L~lW~ 121 (158)
T cd08398 85 GRKGAKEEHCPLAWGNINLFDYTD---------------TLVSGKMALNLWP 121 (158)
T ss_pred cccCCCCceEEEEEEEEEEECCCC---------------hhhCCCEEEEEEc
Confidence 4101 12468999998887321 1246778888875
|
PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c |
| >PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.11 Score=58.14 Aligned_cols=121 Identities=16% Similarity=0.284 Sum_probs=92.7
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECCEEEEeeeccCCCCCeEeEEEEEEeec-------CCCCEEEEEEEecCCCC
Q 001987 538 LTVALVEGVNLASSEMTGLSDPYVVFTCNGKTRTSSVQLQTCDPQWHDILEFDAME-------EPPSVLDVEVFDFDGPF 610 (985)
Q Consensus 538 L~V~v~~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~~~~~tlnP~Wne~f~f~v~~-------~~~~~L~v~V~D~d~~~ 610 (985)
+.|.|++|+|.+... .-.-.+..++++....|..+..+-.|.||.++...+.. .....|++++|-.|..-
T Consensus 2 ivl~i~egr~F~~~~---~~~~vv~a~~ng~~l~TDpv~~~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a~~~~~ 78 (340)
T PF12416_consen 2 IVLSILEGRNFPQRP---RHPIVVEAKFNGESLETDPVPHTESPQFNTELAWECDRKALKQHRLQRTPIKLQCFAVDGST 78 (340)
T ss_pred EEEEEecccCCCCCC---CccEEEEEEeCCceeeecCCCCCCCceeecceeeeccHHHHHHhhccCCceEEEEEEecCCC
Confidence 568999999999763 44566778899999999999999999999999888521 33558999999999323
Q ss_pred CCCCccceEEEEeecc---ccC--cccceEEEcccc--ccCCcceeEEEEEeeecCCC
Q 001987 611 DQATSLGHAEINFLKH---TST--ELADMWVSLEGK--LAQSAQSKVHLRIFLENNNG 661 (985)
Q Consensus 611 ~~dd~lG~~~i~l~~l---~~~--~~~~~w~~L~~~--~~~~~~g~l~l~~~ls~~~~ 661 (985)
+..+.||.+.+||..+ ..+ .....||+|.+. .-.....+|.|.+.+.....
T Consensus 79 ~~re~iGyv~LdLRsa~~~~~~~~~~~~~W~~LL~~~~~y~~~KPEl~l~l~ie~~~~ 136 (340)
T PF12416_consen 79 GKRESIGYVVLDLRSAVVPQEKNQKQKPKWYKLLSSSSKYKKHKPELLLSLSIEDDSK 136 (340)
T ss_pred CcceeccEEEEEccccccccccccccCCCeeEccccccccccCCccEEEEEEEecccc
Confidence 6778999999999988 444 467789999875 33334556777776655443
|
|
| >cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=95.73 E-value=0.11 Score=51.88 Aligned_cols=89 Identities=17% Similarity=0.236 Sum_probs=63.1
Q ss_pred CcEEEEEEEEeecCC---CCCcEEEEEE--CCeE----EeecCccCCCCCeEeeEEEEEEe---cCCCceEEEEEEecCC
Q 001987 3 STRLYVYVLQGQDLL---AKDSYVKVQI--GKHK----SKSRILKNNSNPVWNEEFVFRVH---NIDDEELVVSVFQHND 70 (985)
Q Consensus 3 ~~~L~V~V~~Ar~L~---~~DPyv~v~l--~~~~----~kT~v~~~t~nP~wnE~f~f~v~---~~~~~~L~~~V~D~d~ 70 (985)
...++|+|+.|.++. .+|-||.+.+ +++. ..|+.+.. .++.|||.+.|+|. -+....|.|+||+...
T Consensus 7 ~~~~~v~i~~~~~~~~~~~~~l~V~v~l~~g~~~L~~pv~T~~v~~-~~~~WnEwL~fpI~i~dLPr~ArL~iti~~~~~ 85 (158)
T cd08398 7 NSNLRIKILCATYVNVNDIDKIYVRTGIYHGGEPLCDNVNTQRVPC-SNPRWNEWLDYDIYIPDLPRSARLCLSICSVKG 85 (158)
T ss_pred CCCeEEEEEeeccCCCCCcCeEEEEEEEEECCEEccCeeEecccCC-CCCccceeEEcccchhcCChhheEEEEEEEEec
Confidence 567999999999998 5677888866 3322 24443433 67999999999875 4677899999999872
Q ss_pred CCCCCCCCCCeeEEEEEeCcccc
Q 001987 71 DSGLFGSSGELMGRVRVPVSSIA 93 (985)
Q Consensus 71 ~~~~~~~~d~~lG~~~i~L~~l~ 93 (985)
... .-.....+|.+.++|-+-.
T Consensus 86 ~~~-~k~~~~~iG~~ni~LFd~~ 107 (158)
T cd08398 86 RKG-AKEEHCPLAWGNINLFDYT 107 (158)
T ss_pred ccC-CCCceEEEEEEEEEEECCC
Confidence 100 0012357999999987754
|
PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c |
| >PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length | Back alignment and domain information |
|---|
Probab=95.25 E-value=0.26 Score=55.20 Aligned_cols=120 Identities=16% Similarity=0.362 Sum_probs=92.4
Q ss_pred EEEEEEEeecCC---CCCcEEEEEECCeEEeecCccCCCCCeEeeEEEEEEe-------cCCCceEEEEEEecCCCCCCC
Q 001987 6 LYVYVLQGQDLL---AKDSYVKVQIGKHKSKSRILKNNSNPVWNEEFVFRVH-------NIDDEELVVSVFQHNDDSGLF 75 (985)
Q Consensus 6 L~V~V~~Ar~L~---~~DPyv~v~l~~~~~kT~v~~~t~nP~wnE~f~f~v~-------~~~~~~L~~~V~D~d~~~~~~ 75 (985)
+.|+|++|||.+ ...-.+..+++++...|..+..+-.|.||..+.-++. ......|+++.|..|. .
T Consensus 2 ivl~i~egr~F~~~~~~~~vv~a~~ng~~l~TDpv~~~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a~~~----~ 77 (340)
T PF12416_consen 2 IVLSILEGRNFPQRPRHPIVVEAKFNGESLETDPVPHTESPQFNTELAWECDRKALKQHRLQRTPIKLQCFAVDG----S 77 (340)
T ss_pred EEEEEecccCCCCCCCccEEEEEEeCCceeeecCCCCCCCceeecceeeeccHHHHHHhhccCCceEEEEEEecC----C
Confidence 578999999999 3344666888899999999999999999999998874 3567889999999882 1
Q ss_pred CCCCCeeEEEEEeCccc---cccCCCCCCCeEEEeecCCCCCCCCccccEEEEEEEEEec
Q 001987 76 GSSGELMGRVRVPVSSI---AAEDNHMLPPTWFSLETPKTRKFTNKDCGKILLTISLNGK 132 (985)
Q Consensus 76 ~~~d~~lG~~~i~L~~l---~~~~~~~~~~~W~~L~~~~~~~~~~~~~G~I~lsl~~~~~ 132 (985)
.+..+.||.+.+||..+ ... +....+.||+|-.-++. -.+..-+|+|++.....
T Consensus 78 ~~~re~iGyv~LdLRsa~~~~~~-~~~~~~~W~~LL~~~~~--y~~~KPEl~l~l~ie~~ 134 (340)
T PF12416_consen 78 TGKRESIGYVVLDLRSAVVPQEK-NQKQKPKWYKLLSSSSK--YKKHKPELLLSLSIEDD 134 (340)
T ss_pred CCcceeccEEEEEcccccccccc-ccccCCCeeEccccccc--cccCCccEEEEEEEecc
Confidence 35678999999999998 322 23467899999744221 12346788988888654
|
|
| >PF15627 CEP76-C2: CEP76 C2 domain | Back alignment and domain information |
|---|
Probab=95.24 E-value=0.13 Score=50.73 Aligned_cols=122 Identities=16% Similarity=0.202 Sum_probs=84.1
Q ss_pred EEEEEEEEeecCCCCCC--CCCCCcE--EEEEECCEEEEeeeccCCCCCeEeEEEEEEeecCC-------------CCEE
Q 001987 537 VLTVALVEGVNLASSEM--TGLSDPY--VVFTCNGKTRTSSVQLQTCDPQWHDILEFDAMEEP-------------PSVL 599 (985)
Q Consensus 537 ~L~V~v~~a~~L~~~d~--~g~~DPy--v~v~~~~~~~kT~~~~~tlnP~Wne~f~f~v~~~~-------------~~~L 599 (985)
.|.|+|..|+-...--. .|..+.- +-+.+++|+++|+.++-+.+|.++|.|-|++.... ...|
T Consensus 10 yL~l~vlgGkAFld~l~~~~~~~~s~~~l~l~f~~QRF~S~~Vp~~~eP~f~e~Flf~l~~~~~~~~~~~~~lls~~~pi 89 (156)
T PF15627_consen 10 YLHLRVLGGKAFLDHLQEPEGQVCSTFTLHLHFRGQRFRSKPVPCACEPDFNEEFLFELPRDSFGAGSTATTLLSISDPI 89 (156)
T ss_pred EEEEEEeCchhHhhhhhccCCCCceEEEEEEEecCceEecCCcccccCCCCCCcEEEEecccccccccchhHhhcCCCce
Confidence 57788887765432111 0334444 44455799999999999999999999999974332 3468
Q ss_pred EEEEEecCCCCCCCCccceEEEEeeccccCcccceE--EEccccccC--CcceeEEEEEeeecC
Q 001987 600 DVEVFDFDGPFDQATSLGHAEINFLKHTSTELADMW--VSLEGKLAQ--SAQSKVHLRIFLENN 659 (985)
Q Consensus 600 ~v~V~D~d~~~~~dd~lG~~~i~l~~l~~~~~~~~w--~~L~~~~~~--~~~g~l~l~~~ls~~ 659 (985)
++.|.--|. .+...++|.-.+++..+...+....+ +.|.|.... ...|.|++++.+-+.
T Consensus 90 hivli~~d~-~~~~~Lv~s~~ldWR~vL~s~~~~~~~~vEL~G~~~e~kv~~GiL~l~lELlP~ 152 (156)
T PF15627_consen 90 HIVLIRTDP-SGETTLVGSHFLDWRKVLCSGNGSTSFTVELCGVGPESKVPVGILDLRLELLPN 152 (156)
T ss_pred EEEEEEecC-CCceEeeeeceehHHHHhccCCCccceeEEEeccCCCCccceeEEEEEEEeecC
Confidence 898888886 45668999999999997665555334 444443322 457888888876443
|
|
| >cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=95.03 E-value=0.18 Score=51.14 Aligned_cols=103 Identities=17% Similarity=0.219 Sum_probs=69.4
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEE--CCEE----EEeeeccCCCCCeEeEEEEEEee--c-CCCCEEEEEEEecC
Q 001987 537 VLTVALVEGVNLASSEMTGLSDPYVVFTC--NGKT----RTSSVQLQTCDPQWHDILEFDAM--E-EPPSVLDVEVFDFD 607 (985)
Q Consensus 537 ~L~V~v~~a~~L~~~d~~g~~DPyv~v~~--~~~~----~kT~~~~~tlnP~Wne~f~f~v~--~-~~~~~L~v~V~D~d 607 (985)
.++|+|+.+.+|...+ ..++-||.+.+ |++. ..|+.+.-+-+|.|||.++|++. . +....|.|+||+..
T Consensus 9 ~f~i~i~~~~~~~~~~--~~~~l~V~~~lyhG~~~L~~p~~T~~~~~~~~~~Wnewl~F~I~i~dLPr~ArLciti~~~~ 86 (173)
T cd08693 9 KFSITLHKISNLNAAE--RTMKVGVQAGLFHGGESLCKTVKTSEVSGKNDPVWNETLEFDINVCDLPRMARLCFAIYEVS 86 (173)
T ss_pred CEEEEEEEeccCccCC--CCceEEEEEEEEECCEEccCceEccccCCCCccccceeEEcccchhcCChhHeEEEEEEEec
Confidence 5799999999998622 34666776543 5554 35555555677999999999862 2 34569999999975
Q ss_pred CCCC----------------CCCccceEEEEeeccccCcccceEEEccccccCCcceeEEEEEeee
Q 001987 608 GPFD----------------QATSLGHAEINFLKHTSTELADMWVSLEGKLAQSAQSKVHLRIFLE 657 (985)
Q Consensus 608 ~~~~----------------~dd~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~g~l~l~~~ls 657 (985)
.. . .+..||.+.++|-+... .-.+|...|.+|..
T Consensus 87 ~~-~~~~~~~~~~~~~~~~~~~~~ig~~n~~LFd~~~---------------~Lr~G~~~L~lW~~ 136 (173)
T cd08693 87 KK-AKGKRSRKNQTKKKKKKDDNPIAWVNTMVFDYKG---------------QLKTGDHTLYMWTY 136 (173)
T ss_pred cc-ccccccccccccccccCcceEEEEEeEEEEcccc---------------hhhcCCeEEEecCC
Confidence 31 1 13577777777766221 23567888888854
|
PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty |
| >cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus) | Back alignment and domain information |
|---|
Probab=94.98 E-value=0.022 Score=49.65 Aligned_cols=95 Identities=13% Similarity=0.187 Sum_probs=66.5
Q ss_pred EEEEEEeecCCCCCCCCC-CCcEEE--EEECC-EEEEeeeccCCCCCeEeEEEEEEee--cCCCCEEEEEEEecCCCCCC
Q 001987 539 TVALVEGVNLASSEMTGL-SDPYVV--FTCNG-KTRTSSVQLQTCDPQWHDILEFDAM--EEPPSVLDVEVFDFDGPFDQ 612 (985)
Q Consensus 539 ~V~v~~a~~L~~~d~~g~-~DPyv~--v~~~~-~~~kT~~~~~tlnP~Wne~f~f~v~--~~~~~~L~v~V~D~d~~~~~ 612 (985)
-++|+.+++|.-....|. .--|++ +.+.. ..+||++.....||+++|+|.|.+. ..+.-.|.|.|+.. ..+
T Consensus 2 witv~~c~d~s~~~~~~e~~~i~ikg~~tl~kpv~~KsS~rrgs~d~~f~ETFVFqi~l~qL~~V~L~fsv~~~---~~R 78 (103)
T cd08684 2 WITVLKCKDLSWPSSCGENPTIYIKGILTLPKPVHFKSSAKEGSNDIEFMETFVFAIKLQNLQTVRLVFKIQTQ---TPR 78 (103)
T ss_pred EEEEEEecccccccccCcCCeeEEEEEEecCCCccccchhhcCCCChhHHHHHHHHHHHhhccceEEEEEeecc---CCc
Confidence 467888888865433222 223433 33333 4679999999999999999999963 33455899999992 257
Q ss_pred CCccceEEEEeeccccCcccceEEE
Q 001987 613 ATSLGHAEINFLKHTSTELADMWVS 637 (985)
Q Consensus 613 dd~lG~~~i~l~~l~~~~~~~~w~~ 637 (985)
.+-||.+.+.+.++..+ ..+.|..
T Consensus 79 Ke~iG~~sL~l~s~gee-E~~HW~e 102 (103)
T cd08684 79 KRTIGECSLSLRTLSTQ-ETDHWLE 102 (103)
T ss_pred cceeeEEEeecccCCHH-Hhhhhhc
Confidence 78999999999986543 3566754
|
Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos |
| >PF15627 CEP76-C2: CEP76 C2 domain | Back alignment and domain information |
|---|
Probab=94.82 E-value=0.23 Score=48.86 Aligned_cols=120 Identities=18% Similarity=0.249 Sum_probs=82.6
Q ss_pred cEEEEEEEEeecCC--C----CC--c--EEEEEECCeEEeecCccCCCCCeEeeEEEEEEecC-------------CCce
Q 001987 4 TRLYVYVLQGQDLL--A----KD--S--YVKVQIGKHKSKSRILKNNSNPVWNEEFVFRVHNI-------------DDEE 60 (985)
Q Consensus 4 ~~L~V~V~~Ar~L~--~----~D--P--yv~v~l~~~~~kT~v~~~t~nP~wnE~f~f~v~~~-------------~~~~ 60 (985)
..|++.|+.+|-.. . .+ . .+.+.+.+++++|+.+..+.+|.|+|.|.|+++.. ..+.
T Consensus 9 ~yL~l~vlgGkAFld~l~~~~~~~~s~~~l~l~f~~QRF~S~~Vp~~~eP~f~e~Flf~l~~~~~~~~~~~~~lls~~~p 88 (156)
T PF15627_consen 9 RYLHLRVLGGKAFLDHLQEPEGQVCSTFTLHLHFRGQRFRSKPVPCACEPDFNEEFLFELPRDSFGAGSTATTLLSISDP 88 (156)
T ss_pred eEEEEEEeCchhHhhhhhccCCCCceEEEEEEEecCceEecCCcccccCCCCCCcEEEEecccccccccchhHhhcCCCc
Confidence 45888888887654 1 12 2 34455579999999999999999999999998622 1357
Q ss_pred EEEEEEecCCCCCCCCCCCCeeEEEEEeCccccccCCCCCCCeEEEeecCCCCC-CCCccccEEEEEEEEEec
Q 001987 61 LVVSVFQHNDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRK-FTNKDCGKILLTISLNGK 132 (985)
Q Consensus 61 L~~~V~D~d~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~~~~~~~-~~~~~~G~I~lsl~~~~~ 132 (985)
|.+.|.-.| . .+...++|.-.+....+...+.. ..++.++ ..+.. ......|-|.|++++.|.
T Consensus 89 ihivli~~d---~--~~~~~Lv~s~~ldWR~vL~s~~~---~~~~~vE-L~G~~~e~kv~~GiL~l~lELlP~ 152 (156)
T PF15627_consen 89 IHIVLIRTD---P--SGETTLVGSHFLDWRKVLCSGNG---STSFTVE-LCGVGPESKVPVGILDLRLELLPN 152 (156)
T ss_pred eEEEEEEec---C--CCceEeeeeceehHHHHhccCCC---ccceeEE-EeccCCCCccceeEEEEEEEeecC
Confidence 788887777 2 34558999999998888866432 1244444 22211 113468999999988775
|
|
| >cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=94.67 E-value=0.23 Score=49.53 Aligned_cols=108 Identities=14% Similarity=0.270 Sum_probs=71.2
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEE--CCEE----EEeeeccCCCCCeEeEEEEEEee---cCCCCEEEEEEEecC
Q 001987 537 VLTVALVEGVNLASSEMTGLSDPYVVFTC--NGKT----RTSSVQLQTCDPQWHDILEFDAM---EEPPSVLDVEVFDFD 607 (985)
Q Consensus 537 ~L~V~v~~a~~L~~~d~~g~~DPyv~v~~--~~~~----~kT~~~~~tlnP~Wne~f~f~v~---~~~~~~L~v~V~D~d 607 (985)
.++|++....++...+ ....+-||.+.+ |++. ..|.......++.|||..+|++. -+....|.|+||+.+
T Consensus 9 ~~~i~i~~~~~~~~~~-~~~~~l~V~~~l~~g~~~l~~~~~t~~~~~~~~~~Wne~l~F~i~~~~LP~~arL~itl~~~~ 87 (156)
T cd08380 9 NLRIKIHGITNINLLD-SEDLKLYVRVQLYHGGEPLCPPQSTKKVPFSTSVTWNEWLTFDILISDLPREARLCLSIYAVS 87 (156)
T ss_pred CeEEEEEeeccccccC-CCceeEEEEEEEEECCEEccCceeccCCcCCCCCcccceeEccchhhcCChhheEEEEEEEEe
Confidence 4678888888776521 234566666644 5542 24444444478999999999852 234569999999987
Q ss_pred CCCC--CCCccceEEEEeeccccCcccceEEEccccccCCcceeEEEEEeeecCCC
Q 001987 608 GPFD--QATSLGHAEINFLKHTSTELADMWVSLEGKLAQSAQSKVHLRIFLENNNG 661 (985)
Q Consensus 608 ~~~~--~dd~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~g~l~l~~~ls~~~~ 661 (985)
.. + .+..||.+.++|-+... .-.+|...|.+|.....+
T Consensus 88 ~~-~~~~~~~iG~~~~~lFd~~~---------------~L~~G~~~l~lW~~~~~~ 127 (156)
T cd08380 88 EP-GSKKEVPLGWVNVPLFDYKG---------------KLRQGMITLNLWPGKKTD 127 (156)
T ss_pred cC-CCCcceEEEEEeEEeEcccC---------------cEecCCEEEeccCCcccC
Confidence 52 3 45789999999887321 124677888887654443
|
C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm |
| >cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=94.63 E-value=0.2 Score=50.02 Aligned_cols=91 Identities=18% Similarity=0.325 Sum_probs=62.7
Q ss_pred CCCCcEEEEEE--CCEE----EEeeeccCCCCCeEeEEEEEEee---cCCCCEEEEEEEecCCCCCCCCccceEEEEeec
Q 001987 555 GLSDPYVVFTC--NGKT----RTSSVQLQTCDPQWHDILEFDAM---EEPPSVLDVEVFDFDGPFDQATSLGHAEINFLK 625 (985)
Q Consensus 555 g~~DPyv~v~~--~~~~----~kT~~~~~tlnP~Wne~f~f~v~---~~~~~~L~v~V~D~d~~~~~dd~lG~~~i~l~~ 625 (985)
..+|-||.+.+ +++. ..|+.+.-+..+.|||...|++. -+....|.|+|||.+. -++...||.++++|-+
T Consensus 28 ~~~~l~V~~~l~~~~~~L~~pv~T~~~~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~-~~~~~~vg~~~~~lFd 106 (159)
T cd08397 28 PNSDLFVTCQVFDDGKPLTLPVQTSYKPFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSG-TGKAVPFGGTTLSLFN 106 (159)
T ss_pred CCCCEEEEEEEEECCEeccCcEEccccCCCCCcccceeEEcccchhcCChhheEEEEEEEecC-CCCceEEEEEEEeeEC
Confidence 35677777655 4443 35555555677899999999963 2345699999999886 2566799999999987
Q ss_pred cccCcccceEEEccccccCCcceeEEEEEeeecCCC
Q 001987 626 HTSTELADMWVSLEGKLAQSAQSKVHLRIFLENNNG 661 (985)
Q Consensus 626 l~~~~~~~~w~~L~~~~~~~~~g~l~l~~~ls~~~~ 661 (985)
-. + .-.+|...|.+|.....+
T Consensus 107 ~~-g--------------~Lr~G~~~l~lw~~~~~d 127 (159)
T cd08397 107 KD-G--------------TLRRGRQKLRVWPDVEAD 127 (159)
T ss_pred CC-C--------------cEecCCEEEEEEeCCCCC
Confidence 32 1 124677888887655544
|
PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty |
| >cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=94.41 E-value=0.22 Score=50.55 Aligned_cols=91 Identities=15% Similarity=0.236 Sum_probs=61.3
Q ss_pred CcEEEEEEEEeecCCC----CCcEEEEEE--CCeE----EeecCccCCCCCeEeeEEEEEEe---cCCCceEEEEEEecC
Q 001987 3 STRLYVYVLQGQDLLA----KDSYVKVQI--GKHK----SKSRILKNNSNPVWNEEFVFRVH---NIDDEELVVSVFQHN 69 (985)
Q Consensus 3 ~~~L~V~V~~Ar~L~~----~DPyv~v~l--~~~~----~kT~v~~~t~nP~wnE~f~f~v~---~~~~~~L~~~V~D~d 69 (985)
...++|+|+.+.+|.. .+-||.+.+ +++. ..|+...-+..+.|||.+.|++. -+....|.|.||+..
T Consensus 7 ~~~f~i~i~~~~~~~~~~~~~~l~V~~~lyhG~~~L~~p~~T~~~~~~~~~~Wnewl~F~I~i~dLPr~ArLciti~~~~ 86 (173)
T cd08693 7 EEKFSITLHKISNLNAAERTMKVGVQAGLFHGGESLCKTVKTSEVSGKNDPVWNETLEFDINVCDLPRMARLCFAIYEVS 86 (173)
T ss_pred CCCEEEEEEEeccCccCCCCceEEEEEEEEECCEEccCceEccccCCCCccccceeEEcccchhcCChhHeEEEEEEEec
Confidence 5679999999999983 445666544 3332 45655554567999999999875 477789999999976
Q ss_pred CCCCC-----------CCCCCCeeEEEEEeCcccc
Q 001987 70 DDSGL-----------FGSSGELMGRVRVPVSSIA 93 (985)
Q Consensus 70 ~~~~~-----------~~~~d~~lG~~~i~L~~l~ 93 (985)
...+. .-+....||.+.++|-+..
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~ig~~n~~LFd~~ 121 (173)
T cd08693 87 KKAKGKRSRKNQTKKKKKKDDNPIAWVNTMVFDYK 121 (173)
T ss_pred ccccccccccccccccccCcceEEEEEeEEEEccc
Confidence 21100 0012458888888776643
|
PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty |
| >PF10698 DUF2505: Protein of unknown function (DUF2505); InterPro: IPR019639 This entry represents proteins found Actinobacteria and Proteobacteria | Back alignment and domain information |
|---|
Probab=93.93 E-value=5.1 Score=40.09 Aligned_cols=148 Identities=10% Similarity=0.048 Sum_probs=97.9
Q ss_pred eeeecCChHHHHhccCCCchhHHHHHHcCCcceEEcccccCCCCceeEEEEEEecc--------ccCCCceeeeeEEEEe
Q 001987 818 NAELPISVKALMEMFDGGKLEHQVMEKSGCHNYVTTPWDLVKPGVCERHLSYRFNR--------HVSIFGGEVTCTQQKS 889 (985)
Q Consensus 818 ~~~~p~~~~~~~~lf~~s~f~~~~~~~~~~~~~~~~~W~~~~~~~~~R~~sy~~~~--------~~~~~~~~~~~~q~~~ 889 (985)
...+|++++.++.+|.+..|.+...+..|..+..+..-..+..+ ....+.-.+.. .+-+..-.++.+++ .
T Consensus 4 ~~~~~~~~~~v~~~~~d~~y~~~r~~~~g~~~~~~~~~~~~~~g-~~v~~~~~v~~~~lP~~~~k~v~~~l~v~~~e~-w 81 (159)
T PF10698_consen 4 SVEYPAPVERVWAAFTDEDYWEARCAALGADNAEVESFEVDGDG-VRVTVRQTVPADKLPSAARKFVGGDLRVTRTET-W 81 (159)
T ss_pred EEEcCCCHHHHHHHHcCHHHHHHHHHHcCCCCceEEEEEEcCCe-EEEEEEEecChhhCCHHHHHhcCCCeEEEEEEE-E
Confidence 45789999999999999999999999998766666665433333 22222222211 11111123444433 3
Q ss_pred eccCCCcEEEEEEEeeCCCCCCCeEEEEEEEEEEecCCCCCccEEEEEEEEEEEeeeeehhhhhhchHHHHHHHHHHHHH
Q 001987 890 PLASGEGWIVNEVMSLHDVPFDDHFRVHFRYEIEKSPLAHNACKCAIYIGISWLKSTKFQQRITQNITEKFTHRLKEMIE 969 (985)
Q Consensus 890 ~~~~~~~~vv~~~~~~~dVPygd~F~v~~ry~i~~~~~~~~~~~l~v~~~v~~~k~t~~K~~Ie~~~~~g~~~~~~~~~~ 969 (985)
.-.++..+........+ |.-..+...+.++..+ ..|++.+...|.-. =-++=++||+-+...+.+.+..-.+
T Consensus 82 ~~~~~g~~~g~~~~~~~----G~P~~~~G~~~L~~~~---~gt~~~~~g~v~v~-VPlvGgkiE~~v~~~~~~~~~~e~~ 153 (159)
T PF10698_consen 82 TPLDDGRRTGTFTVSIP----GAPVSISGTMRLRPDG---GGTRLTVEGEVKVK-VPLVGGKIEKAVAENLRKLLEAEQE 153 (159)
T ss_pred ecCCCCeEEEEEEEEec----CceEEEEEEEEEecCC---CCEEEEEEEEEEEE-EccccHHHHHHHHHHHHHHHHHHHH
Confidence 33345566666666665 5557789999998843 58888877766532 3577899999999998888888777
Q ss_pred HHHHHH
Q 001987 970 LVEREI 975 (985)
Q Consensus 970 ~~~~~i 975 (985)
.+.+.|
T Consensus 154 ~~~~wl 159 (159)
T PF10698_consen 154 FTAEWL 159 (159)
T ss_pred HHHhhC
Confidence 776653
|
The function is not known. |
| >cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins | Back alignment and domain information |
|---|
Probab=93.83 E-value=0.6 Score=41.28 Aligned_cols=90 Identities=12% Similarity=0.217 Sum_probs=63.9
Q ss_pred EEEEEEeecCCCCCcEEEEEECCe-EEeecCccCCCCCeEeeEEEEEEecCCCceEEEEEEecCCCCCCCCCCCCeeEEE
Q 001987 7 YVYVLQGQDLLAKDSYVKVQIGKH-KSKSRILKNNSNPVWNEEFVFRVHNIDDEELVVSVFQHNDDSGLFGSSGELMGRV 85 (985)
Q Consensus 7 ~V~V~~Ar~L~~~DPyv~v~l~~~-~~kT~v~~~t~nP~wnE~f~f~v~~~~~~~L~~~V~D~d~~~~~~~~~d~~lG~~ 85 (985)
.|.++.+ ++-.+.+.+.+. .++|.-... .+..|++.|.+++ ...+.|.|.||-.| -..+-|-.
T Consensus 2 ~~~~~~~-----~eV~avLklDn~~VgqT~Wk~~-s~q~WDQ~Fti~L--dRsRELEI~VywrD--------~RslCav~ 65 (98)
T cd08687 2 EVRLMGC-----SEVSAVLKLDNTVVGQTQWKPK-SNQAWDQSFTLEL--ERSRELEIAVYWRD--------WRSLCAVK 65 (98)
T ss_pred eeEEecc-----cceEEEEEEcCeEEeecccccc-ccccccceeEEEe--ecccEEEEEEEEec--------chhhhhhe
Confidence 4455554 577889999874 477766554 6899999999999 68899999999988 23566666
Q ss_pred EEeCccccccCCCCCCCeEEEeecCCCCCCCCccccEEEEEEEE
Q 001987 86 RVPVSSIAAEDNHMLPPTWFSLETPKTRKFTNKDCGKILLTISL 129 (985)
Q Consensus 86 ~i~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~~G~I~lsl~~ 129 (985)
.+.|.+...+ .-.+|+ +.|.+...+.|
T Consensus 66 ~lrLEd~~~~-------~~~~le----------pqg~l~~ev~f 92 (98)
T cd08687 66 FLKLEDERHE-------VQLDME----------PQLCLVAELTF 92 (98)
T ss_pred eeEhhhhccc-------ceeccc----------cccEEEEEEEe
Confidence 6777773221 123343 56888888877
|
PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct |
| >cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=93.24 E-value=0.41 Score=48.57 Aligned_cols=106 Identities=14% Similarity=0.173 Sum_probs=72.2
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEE--CCEEE----Eeeecc----CCCCCeEeEEEEEEee---cCCCCEEEEE
Q 001987 536 WVLTVALVEGVNLASSEMTGLSDPYVVFTC--NGKTR----TSSVQL----QTCDPQWHDILEFDAM---EEPPSVLDVE 602 (985)
Q Consensus 536 g~L~V~v~~a~~L~~~d~~g~~DPyv~v~~--~~~~~----kT~~~~----~tlnP~Wne~f~f~v~---~~~~~~L~v~ 602 (985)
..+.|+|..+.+++........|-||.+.+ |++.. .|+... -...+.|||.++|++. -+....|.|+
T Consensus 8 ~~~~i~v~~~h~~~~~~~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~LPrearL~it 87 (171)
T cd04012 8 DLLSVTVSSLHRIPPTWVQSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQLPRESRLVLT 87 (171)
T ss_pred ccEEEEEEEeecCChHHhhccccEEEEEEEEECCEECcCceeccccccccCccccccccceEECccchhcCChhHEEEEE
Confidence 367899999999998765556888888755 55543 443211 1236789999999862 2335699999
Q ss_pred EEecCCCCC---------CCCccceEEEEeeccccCcccceEEEccccccCCcceeEEEEEeee
Q 001987 603 VFDFDGPFD---------QATSLGHAEINFLKHTSTELADMWVSLEGKLAQSAQSKVHLRIFLE 657 (985)
Q Consensus 603 V~D~d~~~~---------~dd~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~g~l~l~~~ls 657 (985)
||+... -. .+..||.+.++|-+... .-.+|...|.+|..
T Consensus 88 l~~~~~-~~~~~~~~~~~~~~~lG~~~~~LFd~~~---------------~L~~G~~~L~lW~~ 135 (171)
T cd04012 88 LYGTTS-SPDGGSNKQRMGPEELGWVSLPLFDFRG---------------VLRQGSLLLGLWPP 135 (171)
T ss_pred EEEEec-CCccccccccccceEEEEEeEeeEcchh---------------hhccCCEEEEeccC
Confidence 999775 23 34688888888876321 12467788888753
|
There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c |
| >cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=92.54 E-value=0.61 Score=46.52 Aligned_cols=88 Identities=18% Similarity=0.320 Sum_probs=60.6
Q ss_pred CcEEEEEEEEeecCC-----CCCcEEEEEE--CCeE----EeecCccCCCCCeEeeEEEEEEe---cCCCceEEEEEEec
Q 001987 3 STRLYVYVLQGQDLL-----AKDSYVKVQI--GKHK----SKSRILKNNSNPVWNEEFVFRVH---NIDDEELVVSVFQH 68 (985)
Q Consensus 3 ~~~L~V~V~~Ar~L~-----~~DPyv~v~l--~~~~----~kT~v~~~t~nP~wnE~f~f~v~---~~~~~~L~~~V~D~ 68 (985)
+..++|++..+.++. ..+-||.+.+ +++. ..|.......++.|||...|++. -+....|.|.||+.
T Consensus 7 ~~~~~i~i~~~~~~~~~~~~~~~l~V~~~l~~g~~~l~~~~~t~~~~~~~~~~Wne~l~F~i~~~~LP~~arL~itl~~~ 86 (156)
T cd08380 7 NFNLRIKIHGITNINLLDSEDLKLYVRVQLYHGGEPLCPPQSTKKVPFSTSVTWNEWLTFDILISDLPREARLCLSIYAV 86 (156)
T ss_pred CCCeEEEEEeeccccccCCCceeEEEEEEEEECCEEccCceeccCCcCCCCCcccceeEccchhhcCChhheEEEEEEEE
Confidence 457888888888875 3445666554 3331 34444333468999999999965 46778999999998
Q ss_pred CCCCCCCCCCCCeeEEEEEeCcccc
Q 001987 69 NDDSGLFGSSGELMGRVRVPVSSIA 93 (985)
Q Consensus 69 d~~~~~~~~~d~~lG~~~i~L~~l~ 93 (985)
+... ...+..||.+.++|-+..
T Consensus 87 ~~~~---~~~~~~iG~~~~~lFd~~ 108 (156)
T cd08380 87 SEPG---SKKEVPLGWVNVPLFDYK 108 (156)
T ss_pred ecCC---CCcceEEEEEeEEeEccc
Confidence 8210 014679999999987754
|
C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm |
| >PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen [] | Back alignment and domain information |
|---|
Probab=91.67 E-value=3.8 Score=40.00 Aligned_cols=118 Identities=21% Similarity=0.343 Sum_probs=77.5
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEECCEE---EEeee-ccCCCCCeEeEEEEEEeec---C-----CCCEEEEEE
Q 001987 536 WVLTVALVEGVNLASSEMTGLSDPYVVFTCNGKT---RTSSV-QLQTCDPQWHDILEFDAME---E-----PPSVLDVEV 603 (985)
Q Consensus 536 g~L~V~v~~a~~L~~~d~~g~~DPyv~v~~~~~~---~kT~~-~~~tlnP~Wne~f~f~v~~---~-----~~~~L~v~V 603 (985)
..+.|.+.+..+++. ...--||+...++.. .+|.. ....-.-.|||.|.+.+.- . ....+.|.|
T Consensus 7 f~~~l~i~~l~~~p~----~~~~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~~~v 82 (143)
T PF10358_consen 7 FQFDLTIHELENLPS----SNGKVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELKFSV 82 (143)
T ss_pred EEEEEEEEEeECcCC----CCCEEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEEEEE
Confidence 467889999999887 234455666666443 34443 3455677999999998732 1 234799999
Q ss_pred EecCCCCCCCCccceEEEEeeccccC--cccceEEEccccccCCcceeEEEEEeeecCC
Q 001987 604 FDFDGPFDQATSLGHAEINFLKHTST--ELADMWVSLEGKLAQSAQSKVHLRIFLENNN 660 (985)
Q Consensus 604 ~D~d~~~~~dd~lG~~~i~l~~l~~~--~~~~~w~~L~~~~~~~~~g~l~l~~~ls~~~ 660 (985)
+..+. -++...+|.+.|+|.+.... .....-++|... ......|++.+.+....
T Consensus 83 ~~~~~-~~~k~~lG~~~inLaey~~~~~~~~~~~~~l~~~--~~~~a~L~isi~~~~~~ 138 (143)
T PF10358_consen 83 FEVDG-SGKKKVLGKVSINLAEYANEDEEPITVRLLLKKC--KKSNATLSISISLSELR 138 (143)
T ss_pred EEecC-CCccceEEEEEEEHHHhhCcCCCcEEEEEeCccC--CCCCcEEEEEEEEEECc
Confidence 98753 13335899999999997664 345556777764 23445677777654433
|
Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1). |
| >KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=91.52 E-value=0.33 Score=51.99 Aligned_cols=110 Identities=18% Similarity=0.256 Sum_probs=74.0
Q ss_pred CCcEEEEEEEEeecCC--------CCCcEEEEEECC-eEEeecCccCCCCCeEeeEEEEEEecCCCceEEEEEEecCCCC
Q 001987 2 VSTRLYVYVLQGQDLL--------AKDSYVKVQIGK-HKSKSRILKNNSNPVWNEEFVFRVHNIDDEELVVSVFQHNDDS 72 (985)
Q Consensus 2 ~~~~L~V~V~~Ar~L~--------~~DPyv~v~l~~-~~~kT~v~~~t~nP~wnE~f~f~v~~~~~~~L~~~V~D~d~~~ 72 (985)
+++.|.++++.+|+|. +-+-||++.... ++.||.+.....-=.|.|+|..++ .....+.+-||.|+++
T Consensus 49 ~tGiL~~H~~~GRGLr~~p~~kglt~~~ycVle~drqh~aRt~vrs~~~~f~w~e~F~~Dv--v~~~vl~~lvySW~pq- 125 (442)
T KOG1452|consen 49 STGILYFHAYNGRGLRMTPQQKGLTVCFYCVLEPDRQHPARTRVRSSGPGFAWAEDFKHDV--VNIEVLHYLVYSWPPQ- 125 (442)
T ss_pred ccceEEEEEecccccccChhccCceeeeeeeeeecccCccccccccCCCCccchhhceeec--ccceeeeEEEeecCch-
Confidence 4689999999999998 568899998874 457787777777778999999887 5677888999999943
Q ss_pred CCCCCCCCeeEEEEEeCccccccCCCCCCCeEEEeecCCCCCCCCccccEEEEEEEEE
Q 001987 73 GLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTNKDCGKILLTISLN 130 (985)
Q Consensus 73 ~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~~G~I~lsl~~~ 130 (985)
.++.+.-.-.+.+..++... ...-+.|. -.++|++.|.+.+.
T Consensus 126 ----~RHKLC~~g~l~~~~v~rqs----pd~~~Al~--------lePrgq~~~r~~~~ 167 (442)
T KOG1452|consen 126 ----RRHKLCHLGLLEAFVVDRQS----PDRVVALY--------LEPRGQPPLRLPLA 167 (442)
T ss_pred ----hhccccccchhhhhhhhhcC----Ccceeeee--------cccCCCCceecccC
Confidence 24443222233334443321 11113333 34678888887764
|
|
| >PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2 | Back alignment and domain information |
|---|
Probab=90.43 E-value=1.9 Score=42.25 Aligned_cols=76 Identities=16% Similarity=0.310 Sum_probs=50.0
Q ss_pred EeeeccCC-CCCeEeEEEEEEee--c-CCCCEEEEEEEecCCCCCCC----CccceEEEEeeccccCcccceEEEccccc
Q 001987 571 TSSVQLQT-CDPQWHDILEFDAM--E-EPPSVLDVEVFDFDGPFDQA----TSLGHAEINFLKHTSTELADMWVSLEGKL 642 (985)
Q Consensus 571 kT~~~~~t-lnP~Wne~f~f~v~--~-~~~~~L~v~V~D~d~~~~~d----d~lG~~~i~l~~l~~~~~~~~w~~L~~~~ 642 (985)
.|+...-+ .+|.|||.++|.+. . +....|.|+||+.+. -... ..||.+.++|-+...
T Consensus 23 ~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~-~~~~~~~~~~lgw~n~~lFd~~~-------------- 87 (142)
T PF00792_consen 23 STSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDS-KKKSKKKKVPLGWVNLPLFDYRG-------------- 87 (142)
T ss_dssp E-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEEC-STTT--EEEEEEEEEEESB-TTS--------------
T ss_pred eccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecC-CCccccceeEEEEEEEEeECCCC--------------
Confidence 55555555 89999999999962 2 446699999999886 2333 589999999877422
Q ss_pred cCCcceeEEEEEeeecCCCc
Q 001987 643 AQSAQSKVHLRIFLENNNGV 662 (985)
Q Consensus 643 ~~~~~g~l~l~~~ls~~~~~ 662 (985)
.-.+|...|.+|.....+.
T Consensus 88 -~L~~G~~~L~lW~~~~~~~ 106 (142)
T PF00792_consen 88 -QLRQGPQKLSLWPDEEPDP 106 (142)
T ss_dssp -BBEEEEEEEE-EET-TTSS
T ss_pred -cccCCCEEEEEEcCCCCcc
Confidence 1246788888876555443
|
7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A .... |
| >cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=90.23 E-value=1.3 Score=44.94 Aligned_cols=92 Identities=20% Similarity=0.281 Sum_probs=62.7
Q ss_pred CCcEEEEEEEEeecCC------CCCcEEEEEE--CCeE----EeecCcc--C--CCCCeEeeEEEEEEe---cCCCceEE
Q 001987 2 VSTRLYVYVLQGQDLL------AKDSYVKVQI--GKHK----SKSRILK--N--NSNPVWNEEFVFRVH---NIDDEELV 62 (985)
Q Consensus 2 ~~~~L~V~V~~Ar~L~------~~DPyv~v~l--~~~~----~kT~v~~--~--t~nP~wnE~f~f~v~---~~~~~~L~ 62 (985)
++..+.|+|..+.+++ ..|-||.+.+ +++. ..|+... + ...+.|||.+.|++. -+....|.
T Consensus 6 v~~~~~i~v~~~h~~~~~~~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~LPrearL~ 85 (171)
T cd04012 6 VTDLLSVTVSSLHRIPPTWVQSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQLPRESRLV 85 (171)
T ss_pred ccccEEEEEEEeecCChHHhhccccEEEEEEEEECCEECcCceeccccccccCccccccccceEECccchhcCChhHEEE
Confidence 4678999999999999 3778888866 3332 3443221 1 235789999999975 46778999
Q ss_pred EEEEecCCCCCC----CCCCCCeeEEEEEeCcccc
Q 001987 63 VSVFQHNDDSGL----FGSSGELMGRVRVPVSSIA 93 (985)
Q Consensus 63 ~~V~D~d~~~~~----~~~~d~~lG~~~i~L~~l~ 93 (985)
|.||+......- .-..+..||.+.++|-+..
T Consensus 86 itl~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd~~ 120 (171)
T cd04012 86 LTLYGTTSSPDGGSNKQRMGPEELGWVSLPLFDFR 120 (171)
T ss_pred EEEEEEecCCccccccccccceEEEEEeEeeEcch
Confidence 999997721000 0003468999999877643
|
There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c |
| >cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=89.95 E-value=1 Score=45.09 Aligned_cols=70 Identities=13% Similarity=0.247 Sum_probs=52.7
Q ss_pred CCCcEEEEEEC--CeE----EeecCccCCCCCeEeeEEEEEEe---cCCCceEEEEEEecCCCCCCCCCCCCeeEEEEEe
Q 001987 18 AKDSYVKVQIG--KHK----SKSRILKNNSNPVWNEEFVFRVH---NIDDEELVVSVFQHNDDSGLFGSSGELMGRVRVP 88 (985)
Q Consensus 18 ~~DPyv~v~l~--~~~----~kT~v~~~t~nP~wnE~f~f~v~---~~~~~~L~~~V~D~d~~~~~~~~~d~~lG~~~i~ 88 (985)
.+|-||.+++- ++. .+|+.+.-+..+.|||...|+|. -+....|.|+|||.+ . .++...+|.+.++
T Consensus 29 ~~~l~V~~~l~~~~~~L~~pv~T~~~~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~---~--~~~~~~vg~~~~~ 103 (159)
T cd08397 29 NSDLFVTCQVFDDGKPLTLPVQTSYKPFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVS---G--TGKAVPFGGTTLS 103 (159)
T ss_pred CCCEEEEEEEEECCEeccCcEEccccCCCCCcccceeEEcccchhcCChhheEEEEEEEec---C--CCCceEEEEEEEe
Confidence 57788888773 322 35655555677899999999975 467789999999988 2 3456799999998
Q ss_pred Cccc
Q 001987 89 VSSI 92 (985)
Q Consensus 89 L~~l 92 (985)
|-+-
T Consensus 104 lFd~ 107 (159)
T cd08397 104 LFNK 107 (159)
T ss_pred eECC
Confidence 7764
|
PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty |
| >cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=89.92 E-value=2.5 Score=43.01 Aligned_cols=70 Identities=16% Similarity=0.148 Sum_probs=43.8
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEE--CCEE---EEeeeccCCCCCeEeEEEEEEee--c-CCCCEEEEEEEecC
Q 001987 537 VLTVALVEGVNLASSEMTGLSDPYVVFTC--NGKT---RTSSVQLQTCDPQWHDILEFDAM--E-EPPSVLDVEVFDFD 607 (985)
Q Consensus 537 ~L~V~v~~a~~L~~~d~~g~~DPyv~v~~--~~~~---~kT~~~~~tlnP~Wne~f~f~v~--~-~~~~~L~v~V~D~d 607 (985)
.++|+|..+.++ ..+.....--||.+.+ |++. .+|+...-+.+|.|||.++|++. + +....|.|+||+..
T Consensus 11 ~friki~~~~~~-~~~~~~~~~l~V~~~Ly~g~~~l~~~~T~~~~~~~~~~WnEwL~f~I~~~dLP~~arLc~ti~~~~ 88 (178)
T cd08399 11 KFRVKILGIDIP-VLPRNTDLTVFVEANIQHGQQVLCQRRTSPKPFTEEVLWNTWLEFDIKIKDLPKGALLNLQIYCGK 88 (178)
T ss_pred CEEEEEEeeccc-CcCCCCceEEEEEEEEEECCeecccceeeccCCCCCccccccEECccccccCChhhEEEEEEEEEe
Confidence 467888887633 3222222234444433 4443 25666666778999999999862 2 34569999999974
|
PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir |
| >cd05018 CoxG Carbon monoxide dehydrogenase subunit G (CoxG) | Back alignment and domain information |
|---|
Probab=89.69 E-value=14 Score=35.48 Aligned_cols=138 Identities=12% Similarity=0.130 Sum_probs=75.2
Q ss_pred eeeecCChHHHHhccCCCchhHHHHHHcCCcceEEcccccCCCCceeEEEEEEeccccCCCceeeeeEEEEeeccCCCcE
Q 001987 818 NAELPISVKALMEMFDGGKLEHQVMEKSGCHNYVTTPWDLVKPGVCERHLSYRFNRHVSIFGGEVTCTQQKSPLASGEGW 897 (985)
Q Consensus 818 ~~~~p~~~~~~~~lf~~s~f~~~~~~~~~~~~~~~~~W~~~~~~~~~R~~sy~~~~~~~~~~~~~~~~q~~~~~~~~~~~ 897 (985)
+..++++++++++++.|-.-..++.- ++.++. + ..++.. .+..+. .++|.....+..-+.......+.+
T Consensus 6 ~~~i~a~~e~v~~~l~D~~~~~~w~p--~~~~~~---~--~~~~~~--~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 74 (144)
T cd05018 6 EFRIPAPPEEVWAALNDPEVLARCIP--GCESLE---K--IGPNEY--EATVKL--KVGPVKGTFKGKVELSDLDPPESY 74 (144)
T ss_pred EEEecCCHHHHHHHhcCHHHHHhhcc--chhhcc---c--cCCCeE--EEEEEE--EEccEEEEEEEEEEEEecCCCcEE
Confidence 45789999999999866543322221 111111 1 111211 122221 124433233211111122233445
Q ss_pred EEEEEEeeCCCCCCCeEEEEEEEEEEecCCCCCccEEEEEEEEEEEeeeeehhhhhhchHHHHHHHHHHHHHHHHHHH
Q 001987 898 IVNEVMSLHDVPFDDHFRVHFRYEIEKSPLAHNACKCAIYIGISWLKSTKFQQRITQNITEKFTHRLKEMIELVEREI 975 (985)
Q Consensus 898 vv~~~~~~~dVPygd~F~v~~ry~i~~~~~~~~~~~l~v~~~v~~~k~t~~K~~Ie~~~~~g~~~~~~~~~~~~~~~i 975 (985)
++..... +-+..+....+|.|++. . ++|+|...+.+.+.. .++.+...-.....++...++++.|++.+
T Consensus 75 ~~~~~~~----~~~~~~~~~~~~~l~~~-~--~gT~v~~~~~~~~~g--~l~~l~~~~~~~~~~~~~~~~~~~l~~~~ 143 (144)
T cd05018 75 TITGEGK----GGAGFVKGTARVTLEPD-G--GGTRLTYTADAQVGG--KLAQLGSRLIDGAARKLINQFFENLASKI 143 (144)
T ss_pred EEEEEEc----CCCceEEEEEEEEEEec-C--CcEEEEEEEEEEEcc--ChhhhCHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5553322 22556789999999987 5 589999888888764 45666655555566677777777777664
|
CoxG has been shown, in Oligotropha carboxidovorans, to anchor the carbon monoxide (CO) dehydrogenase to the cytoplasmic membrane. The gene encoding CoxG is part of the Cox cluster (coxBCMSLDEFGHIK) located on a low-copy-number, circular, megaplasmid pHCG3. This cluster includes genes encoding subunits of CO dehydrogenase and several accessory components involved in the utilization of CO. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. |
| >cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins | Back alignment and domain information |
|---|
Probab=88.86 E-value=4.2 Score=36.16 Aligned_cols=84 Identities=11% Similarity=0.156 Sum_probs=59.6
Q ss_pred CCCcEEEEEECCE-EEEeeeccCCCCCeEeEEEEEEeecCCCCEEEEEEEecCCCCCCCCccceEEEEeeccccCcccce
Q 001987 556 LSDPYVVFTCNGK-TRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGPFDQATSLGHAEINFLKHTSTELADM 634 (985)
Q Consensus 556 ~~DPyv~v~~~~~-~~kT~~~~~tlnP~Wne~f~f~v~~~~~~~L~v~V~D~d~~~~~dd~lG~~~i~l~~l~~~~~~~~ 634 (985)
-++-.+++.+++. ...|.... ..+..|++.|.|++ +....|+|.||-+|. ..+.|-..+-|++. .+..
T Consensus 8 ~~eV~avLklDn~~VgqT~Wk~-~s~q~WDQ~Fti~L--dRsRELEI~VywrD~----RslCav~~lrLEd~----~~~~ 76 (98)
T cd08687 8 CSEVSAVLKLDNTVVGQTQWKP-KSNQAWDQSFTLEL--ERSRELEIAVYWRDW----RSLCAVKFLKLEDE----RHEV 76 (98)
T ss_pred ccceEEEEEEcCeEEeeccccc-cccccccceeEEEe--ecccEEEEEEEEecc----hhhhhheeeEhhhh----cccc
Confidence 3677888998864 45666543 36889999999984 556799999998885 24678788888873 2334
Q ss_pred EEEccccccCCcceeEEEEEee
Q 001987 635 WVSLEGKLAQSAQSKVHLRIFL 656 (985)
Q Consensus 635 w~~L~~~~~~~~~g~l~l~~~l 656 (985)
-++|. .+|.+...+++
T Consensus 77 ~~~le------pqg~l~~ev~f 92 (98)
T cd08687 77 QLDME------PQLCLVAELTF 92 (98)
T ss_pred eeccc------cccEEEEEEEe
Confidence 45555 46777777655
|
PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct |
| >cd08876 START_1 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family | Back alignment and domain information |
|---|
Probab=88.85 E-value=12 Score=38.50 Aligned_cols=143 Identities=8% Similarity=-0.024 Sum_probs=79.2
Q ss_pred eeeecCChHHHHhccCCCchhHHHHHHcCCcceEEcccccCCCCceeEEEEEEeccccCCCcee-eeeEEEEeeccCCCc
Q 001987 818 NAELPISVKALMEMFDGGKLEHQVMEKSGCHNYVTTPWDLVKPGVCERHLSYRFNRHVSIFGGE-VTCTQQKSPLASGEG 896 (985)
Q Consensus 818 ~~~~p~~~~~~~~lf~~s~f~~~~~~~~~~~~~~~~~W~~~~~~~~~R~~sy~~~~~~~~~~~~-~~~~q~~~~~~~~~~ 896 (985)
..+++++++++++++.+-+...++... +.+...-. ..+.. ..+.|..-++..|.+.+ .+-........++..
T Consensus 46 ~~~i~~s~e~v~~vi~d~e~~~~w~~~--~~~~~vie----~~~~~-~~i~~~~~~~p~pvs~Rdfv~~~~~~~~~~~~~ 118 (195)
T cd08876 46 VAEVDASIEAFLALLRDTESYPQWMPN--CKESRVLK----RTDDN-ERSVYTVIDLPWPVKDRDMVLRSTTEQDADDGS 118 (195)
T ss_pred EEEEeCCHHHHHHHHhhhHhHHHHHhh--cceEEEee----cCCCC-cEEEEEEEecccccCCceEEEEEEEEEcCCCCE
Confidence 446889999999988766655555553 23333211 11111 34555542333333222 222212222222344
Q ss_pred EEEEEEEeeCCCCCC-C---eEEEEEEEEEEecCCCCCccEEEEEEEEEEEeeeeehhhhhhchHHHHHHHHHHHHHHHH
Q 001987 897 WIVNEVMSLHDVPFD-D---HFRVHFRYEIEKSPLAHNACKCAIYIGISWLKSTKFQQRITQNITEKFTHRLKEMIELVE 972 (985)
Q Consensus 897 ~vv~~~~~~~dVPyg-d---~F~v~~ry~i~~~~~~~~~~~l~v~~~v~~~k~t~~K~~Ie~~~~~g~~~~~~~~~~~~~ 972 (985)
++|......+++|-. + -+.....|.|++.++ ++|+|.....+.+.+ .+-+.+|..-+... ...+++.|+
T Consensus 119 ~~i~~~s~~~~~P~~~~~vR~~~~~~~~~i~~~~~--~~t~vt~~~~~dp~g-~iP~~lv~~~~~~~----~~~~l~~l~ 191 (195)
T cd08876 119 VTITLEAAPEALPEQKGYVRIKTVEGQWTFTPLGN--GKTRVTYQAYADPGG-SIPGWLANAFAKDA----PYNTLENLR 191 (195)
T ss_pred EEEEeecCCccCCCCCCeEEceeceeeEEEEECCC--CeEEEEEEEEeCCCC-CCCHHHHHHHHHHH----HHHHHHHHH
Confidence 555444333445643 2 245667799999887 899999999999964 46677777666544 444555555
Q ss_pred HH
Q 001987 973 RE 974 (985)
Q Consensus 973 ~~ 974 (985)
+.
T Consensus 192 ~~ 193 (195)
T cd08876 192 KQ 193 (195)
T ss_pred Hh
Confidence 44
|
Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a |
| >PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen [] | Back alignment and domain information |
|---|
Probab=88.26 E-value=11 Score=36.68 Aligned_cols=116 Identities=22% Similarity=0.361 Sum_probs=75.4
Q ss_pred EEEEEEEEeecCCCCCcEEEEEE--CCe---EEeecCcc-CCCCCeEeeEEEEEEe---c-----CCCceEEEEEEecCC
Q 001987 5 RLYVYVLQGQDLLAKDSYVKVQI--GKH---KSKSRILK-NNSNPVWNEEFVFRVH---N-----IDDEELVVSVFQHND 70 (985)
Q Consensus 5 ~L~V~V~~Ar~L~~~DPyv~v~l--~~~---~~kT~v~~-~t~nP~wnE~f~f~v~---~-----~~~~~L~~~V~D~d~ 70 (985)
.+.++|.+..+++..+..+.|.+ ++. ...|.... .+-.-.|||+|.+.+. + .....+.|.|+...+
T Consensus 8 ~~~l~i~~l~~~p~~~~~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~~~v~~~~~ 87 (143)
T PF10358_consen 8 QFDLTIHELENLPSSNGKVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELKFSVFEVDG 87 (143)
T ss_pred EEEEEEEEeECcCCCCCEEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEEEEEEEecC
Confidence 57899999999985555555555 333 23444333 2456799999999864 1 344678899998851
Q ss_pred CCCCCCCCCCeeEEEEEeCccccccCCCCCCCeEEEeecCCCCCCCCccccEEEEEEEEEec
Q 001987 71 DSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTNKDCGKILLTISLNGK 132 (985)
Q Consensus 71 ~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~~G~I~lsl~~~~~ 132 (985)
.++...+|.+.++|++...... .....-++|.+. ......|.|++.+.+.
T Consensus 88 -----~~~k~~lG~~~inLaey~~~~~-~~~~~~~~l~~~------~~~~a~L~isi~~~~~ 137 (143)
T PF10358_consen 88 -----SGKKKVLGKVSINLAEYANEDE-EPITVRLLLKKC------KKSNATLSISISLSEL 137 (143)
T ss_pred -----CCccceEEEEEEEHHHhhCcCC-CcEEEEEeCccC------CCCCcEEEEEEEEEEC
Confidence 1233699999999999986521 123344666522 2345788888887654
|
Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1). |
| >cd08871 START_STARD10-like Lipid-binding START domain of mammalian STARD10 and related proteins | Back alignment and domain information |
|---|
Probab=85.85 E-value=26 Score=37.06 Aligned_cols=148 Identities=10% Similarity=0.024 Sum_probs=85.7
Q ss_pred ee-cCChHHHHhccCCCchhHHHHHHcCCcceEEcccccCCCCceeEEEEEEe-ccccCCCceeeeeEEEEeeccCCCcE
Q 001987 820 EL-PISVKALMEMFDGGKLEHQVMEKSGCHNYVTTPWDLVKPGVCERHLSYRF-NRHVSIFGGEVTCTQQKSPLASGEGW 897 (985)
Q Consensus 820 ~~-p~~~~~~~~lf~~s~f~~~~~~~~~~~~~~~~~W~~~~~~~~~R~~sy~~-~~~~~~~~~~~~~~q~~~~~~~~~~~ 897 (985)
++ .++++.+++++.+..+............ .+.... .+ . .+.|.. +.| .|.+.+=-...+.....++..+
T Consensus 54 ~~~~~s~e~~~~~l~D~~~r~~Wd~~~~e~~-~ie~~d---~~--~-~i~y~~~~~P-~pvs~RDfV~~r~~~~~~~~~v 125 (222)
T cd08871 54 IFPDVPAETLYDVLHDPEYRKTWDSNMIESF-DICQLN---PN--N-DIGYYSAKCP-KPLKNRDFVNLRSWLEFGGEYI 125 (222)
T ss_pred EeCCCCHHHHHHHHHChhhhhhhhhhhceeE-EEEEcC---CC--C-EEEEEEeECC-CCCCCCeEEEEEEEEeCCCEEE
Confidence 45 4899999998755554444333321111 122221 11 2 344443 333 3443332222222223335556
Q ss_pred EEEEEEeeCCCCCCCe-EEEE---EEEEEEecCCCCCccEEEEEEEEEEEeeeeehhhhhhchHHHHHHHHHHHHHHHHH
Q 001987 898 IVNEVMSLHDVPFDDH-FRVH---FRYEIEKSPLAHNACKCAIYIGISWLKSTKFQQRITQNITEKFTHRLKEMIELVER 973 (985)
Q Consensus 898 vv~~~~~~~dVPygd~-F~v~---~ry~i~~~~~~~~~~~l~v~~~v~~~k~t~~K~~Ie~~~~~g~~~~~~~~~~~~~~ 973 (985)
++..++..+++|-..- -+++ ..|.|++.++ ++|++.....+...++ +=+.+|.+-+.+..-..++.|-+++.+
T Consensus 126 i~~~sv~~~~~P~~~g~VR~~~~~~g~~i~p~~~--~~t~vt~~~~~Dp~G~-IP~~lvN~~~~~~~~~~l~~l~k~~~~ 202 (222)
T cd08871 126 IFNHSVKHKKYPPRKGFVRAISLLTGYLIRPTGP--KGCTLTYVTQNDPKGS-LPKWVVNKATTKLAPKVMKKLHKAALK 202 (222)
T ss_pred EEeccccCCCCCCCCCeEEeEEEccEEEEEECCC--CCEEEEEEEecCCCCC-cCHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 7778888888986553 4444 4688988876 8899999999998884 335556666666566777777777777
Q ss_pred HHhhc
Q 001987 974 EILFA 978 (985)
Q Consensus 974 ~i~~~ 978 (985)
|-+=.
T Consensus 203 y~~~~ 207 (222)
T cd08871 203 YPEWK 207 (222)
T ss_pred HHHHH
Confidence 65433
|
This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD10 (also known as CGI-52, PTCP-like, and SDCCAG28). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD10 binds phophatidylcholine and phosphatidylethanolamine. This protein is widely expressed and is synthesized constitutively in many organs. It may function in the liver in the export of phospholipids into bile. It is concentrated in the sperm flagellum, and may play a role in energy metabolism. In the mammary gland it may participate in the enrichment of lipids in milk, and be a potential marker of differentiation. Its expression is induced in this gland during gestation and lactation. It is overe |
| >cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=85.09 E-value=3.9 Score=41.63 Aligned_cols=67 Identities=15% Similarity=0.248 Sum_probs=46.9
Q ss_pred CcEEEEEEEEeecCC---CCCc--EEEEEE--CCeE---EeecCccCCCCCeEeeEEEEEEe---cCCCceEEEEEEecC
Q 001987 3 STRLYVYVLQGQDLL---AKDS--YVKVQI--GKHK---SKSRILKNNSNPVWNEEFVFRVH---NIDDEELVVSVFQHN 69 (985)
Q Consensus 3 ~~~L~V~V~~Ar~L~---~~DP--yv~v~l--~~~~---~kT~v~~~t~nP~wnE~f~f~v~---~~~~~~L~~~V~D~d 69 (985)
+..++|+|..+.++. ..++ ||.+.+ +++. .+|+...-+.+|.|||.+.|+|. -+....|.|.||+..
T Consensus 9 ~~~friki~~~~~~~~~~~~~~~l~V~~~Ly~g~~~l~~~~T~~~~~~~~~~WnEwL~f~I~~~dLP~~arLc~ti~~~~ 88 (178)
T cd08399 9 DRKFRVKILGIDIPVLPRNTDLTVFVEANIQHGQQVLCQRRTSPKPFTEEVLWNTWLEFDIKIKDLPKGALLNLQIYCGK 88 (178)
T ss_pred CCCEEEEEEeecccCcCCCCceEEEEEEEEEECCeecccceeeccCCCCCccccccEECccccccCChhhEEEEEEEEEe
Confidence 567889999987543 3334 444433 3332 35666666778999999999965 467789999999975
|
PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir |
| >cd08868 START_STARD1_3_like Cholesterol-binding START domain of mammalian STARD1, -3 and related proteins | Back alignment and domain information |
|---|
Probab=85.01 E-value=13 Score=38.80 Aligned_cols=146 Identities=8% Similarity=-0.012 Sum_probs=77.3
Q ss_pred eeeecCChHHHHh-ccCCCchhHHHHHHcCCcceEEcccccCCCCceeEEEEEEecccc--CCCceeeeeEEEEeeccCC
Q 001987 818 NAELPISVKALME-MFDGGKLEHQVMEKSGCHNYVTTPWDLVKPGVCERHLSYRFNRHV--SIFGGEVTCTQQKSPLASG 894 (985)
Q Consensus 818 ~~~~p~~~~~~~~-lf~~s~f~~~~~~~~~~~~~~~~~W~~~~~~~~~R~~sy~~~~~~--~~~~~~~~~~q~~~~~~~~ 894 (985)
..+++++++++|. ++.+.+...+...... +.. . -+..+..++ +.|...+|. .|.+.+=.+..+.....++
T Consensus 53 ~~~i~~~~~~v~~~l~~d~~~~~~Wd~~~~--~~~---~-i~~~d~~~~-i~y~~~~~~~~~~vs~RDfV~~r~~~~~~~ 125 (208)
T cd08868 53 TGVLDCPAEFLYNELVLNVESLPSWNPTVL--ECK---I-IQVIDDNTD-ISYQVAAEAGGGLVSPRDFVSLRHWGIREN 125 (208)
T ss_pred EEEEcCCHHHHHHHHHcCccccceecCccc--ceE---E-EEEecCCcE-EEEEEecCcCCCcccccceEEEEEEEecCC
Confidence 5588999999987 6655432222211111 111 0 011112233 445543332 3333343333344434444
Q ss_pred CcEEEEEEEeeCCCCCC-CeEEEE---EEEEEEecCCCCCccEEEEEEEEEEEeeeeehhhhhhchHHHHHHHHHHHHHH
Q 001987 895 EGWIVNEVMSLHDVPFD-DHFRVH---FRYEIEKSPLAHNACKCAIYIGISWLKSTKFQQRITQNITEKFTHRLKEMIEL 970 (985)
Q Consensus 895 ~~~vv~~~~~~~dVPyg-d~F~v~---~ry~i~~~~~~~~~~~l~v~~~v~~~k~t~~K~~Ie~~~~~g~~~~~~~~~~~ 970 (985)
..+++..++.-+..|-. ++-+++ ..|.|++.++++++|++.....+...+| .=+..|.+.+.++.-+.++.+-+.
T Consensus 126 ~~~i~~~sv~h~~~P~~~g~VR~~~~~~~~~i~p~~~~~~~t~v~~~~~~Dp~G~-iP~~lvN~~~~~~~~~~~~~Lr~~ 204 (208)
T cd08868 126 CYLSSGVSVEHPAMPPTKNYVRGENGPGCWILRPLPNNPNKCNFTWLLNTDLKGW-LPQYLVDQALASVLLDFMKHLRKR 204 (208)
T ss_pred eEEEEEEeccCCCCCCCCCeEEEeccccEEEEEECCCCCCceEEEEEEEECCCCC-CcceeeehhhHHHHHHHHHHHHHH
Confidence 44555566655666644 445554 7899999877668899998888888764 223345555555555555544443
Q ss_pred H
Q 001987 971 V 971 (985)
Q Consensus 971 ~ 971 (985)
+
T Consensus 205 ~ 205 (208)
T cd08868 205 I 205 (208)
T ss_pred H
Confidence 3
|
This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and STARD3 (also known as metastatic lymph node 64/MLN64). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. This STARD1-like subfamily has a high affinity for cholesterol. STARD1/StAR can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synth |
| >PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2 | Back alignment and domain information |
|---|
Probab=84.88 E-value=5 Score=39.30 Aligned_cols=57 Identities=16% Similarity=0.339 Sum_probs=41.6
Q ss_pred EeecCccCC-CCCeEeeEEEEEEe---cCCCceEEEEEEecCCCCCCCCCCC----CeeEEEEEeCcccc
Q 001987 32 SKSRILKNN-SNPVWNEEFVFRVH---NIDDEELVVSVFQHNDDSGLFGSSG----ELMGRVRVPVSSIA 93 (985)
Q Consensus 32 ~kT~v~~~t-~nP~wnE~f~f~v~---~~~~~~L~~~V~D~d~~~~~~~~~d----~~lG~~~i~L~~l~ 93 (985)
..|....-+ .+|.|||.+.|++. -+....|.|.||..+ . .... ..||.+.++|-+..
T Consensus 22 ~~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~---~--~~~~~~~~~~lgw~n~~lFd~~ 86 (142)
T PF00792_consen 22 QSTSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVD---S--KKKSKKKKVPLGWVNLPLFDYR 86 (142)
T ss_dssp EE-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEE---C--STTT--EEEEEEEEEEESB-TT
T ss_pred eeccccccccccceEeeEEEeecChHHCChhHeEEEEEEEec---C--CCccccceeEEEEEEEEeECCC
Confidence 356666555 79999999999986 477899999999988 2 2233 69999999987764
|
7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A .... |
| >cd08870 START_STARD2_7-like Lipid-binding START domain of mammalian STARD2, -7, and related proteins | Back alignment and domain information |
|---|
Probab=84.49 E-value=30 Score=36.27 Aligned_cols=150 Identities=8% Similarity=-0.042 Sum_probs=93.8
Q ss_pred eeee-cCChHHHHhccCCCchhHHHHHHcCCcceEEcccccCCCCceeEEEEEEeccccCCCceeeeeEEE-EeeccCCC
Q 001987 818 NAEL-PISVKALMEMFDGGKLEHQVMEKSGCHNYVTTPWDLVKPGVCERHLSYRFNRHVSIFGGEVTCTQQ-KSPLASGE 895 (985)
Q Consensus 818 ~~~~-p~~~~~~~~lf~~s~f~~~~~~~~~~~~~~~~~W~~~~~~~~~R~~sy~~~~~~~~~~~~~~~~q~-~~~~~~~~ 895 (985)
..++ .++++.|++++.|.++..+.....- +...=. .... ...+.+.|....|. |..-+=-..++ .+...++.
T Consensus 55 ~~~~~~~s~~~~~~~l~D~~~r~~Wd~~~~--~~~~le--~~~~-~~~~i~y~~~~~P~-P~s~RD~V~~r~~~~~~~~~ 128 (209)
T cd08870 55 RGVFEDCTPELLRDFYWDDEYRKKWDETVI--EHETLE--EDEK-SGTEIVRWVKKFPF-PLSDREYVIARRLWESDDRS 128 (209)
T ss_pred EEEEcCCCHHHHHHHHcChhhHhhhhhhee--eEEEEE--ecCC-CCcEEEEEEEECCC-cCCCceEEEEEEEEEcCCCE
Confidence 3356 5799999998877776665555432 222111 1111 02344444444553 44333222322 23333566
Q ss_pred cEEEEEEEeeCCCCCCCeEEEE---EEEEEEecCCCCCccEEEEEEEEEEEeeeeehhhhhhchHHHHHHHHHHHHHHHH
Q 001987 896 GWIVNEVMSLHDVPFDDHFRVH---FRYEIEKSPLAHNACKCAIYIGISWLKSTKFQQRITQNITEKFTHRLKEMIELVE 972 (985)
Q Consensus 896 ~~vv~~~~~~~dVPygd~F~v~---~ry~i~~~~~~~~~~~l~v~~~v~~~k~t~~K~~Ie~~~~~g~~~~~~~~~~~~~ 972 (985)
.+++..++.-+.+|-.++-+|+ .+|.|++.+.++++|++.+.+..+- +..+=+.++...+..|.-..++.|-++++
T Consensus 129 ~~i~~~sv~~~~~P~~~~vRv~~~~~~~~i~p~~~~~~~t~~~~~~~~dp-~G~IP~wlvN~~~~~~~~~~l~~l~~a~~ 207 (209)
T cd08870 129 YVCVTKGVPYPSVPRSGRKRVDDYESSLVIRAVKGDGQGSACEVTYFHNP-DGGIPRELAKLAVKRGMPGFLKKLENALR 207 (209)
T ss_pred EEEEEeCCcCCCCCCCCcEEEEEEEeEEEEEEecCCCCceEEEEEEEECC-CCCCCHHHHHHHHHhhhHHHHHHHHHHHh
Confidence 6666677777789986566554 6789988732337888888887775 44566889999999999999999988887
Q ss_pred HH
Q 001987 973 RE 974 (985)
Q Consensus 973 ~~ 974 (985)
+|
T Consensus 208 ~Y 209 (209)
T cd08870 208 KY 209 (209)
T ss_pred cC
Confidence 64
|
This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP), and STARD7 (also known as gestational trophoblastic tumor 1/GTT1). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may also have a mitochondrial function. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be invo |
| >KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=84.26 E-value=1.9 Score=46.34 Aligned_cols=81 Identities=14% Similarity=0.128 Sum_probs=59.5
Q ss_pred CCCeEEEEEEEEeecCCCCCC--CCCCCcEEEEEECCE-EEEeeeccCCCCCeEeEEEEEEeecCCCCEEEEEEEecCCC
Q 001987 533 GDGWVLTVALVEGVNLASSEM--TGLSDPYVVFTCNGK-TRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGP 609 (985)
Q Consensus 533 ~~~g~L~V~v~~a~~L~~~d~--~g~~DPyv~v~~~~~-~~kT~~~~~tlnP~Wne~f~f~v~~~~~~~L~v~V~D~d~~ 609 (985)
+-.|.|.+++.++++|.-... +-.-+-||++.++.+ +-+|.+.....-=.|.|.|+.++.. ...+.+-||.|+..
T Consensus 48 s~tGiL~~H~~~GRGLr~~p~~kglt~~~ycVle~drqh~aRt~vrs~~~~f~w~e~F~~Dvv~--~~vl~~lvySW~pq 125 (442)
T KOG1452|consen 48 SSTGILYFHAYNGRGLRMTPQQKGLTVCFYCVLEPDRQHPARTRVRSSGPGFAWAEDFKHDVVN--IEVLHYLVYSWPPQ 125 (442)
T ss_pred cccceEEEEEecccccccChhccCceeeeeeeeeecccCccccccccCCCCccchhhceeeccc--ceeeeEEEeecCch
Confidence 456899999999999976443 446789999998765 3456665555666788999988643 36889999999973
Q ss_pred CCCCCcc
Q 001987 610 FDQATSL 616 (985)
Q Consensus 610 ~~~dd~l 616 (985)
.++.+.
T Consensus 126 -~RHKLC 131 (442)
T KOG1452|consen 126 -RRHKLC 131 (442)
T ss_pred -hhcccc
Confidence 455543
|
|
| >smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain | Back alignment and domain information |
|---|
Probab=84.04 E-value=5.2 Score=36.63 Aligned_cols=71 Identities=17% Similarity=0.229 Sum_probs=46.1
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEE--CCEEE----EeeeccCCCCCeEeEEEEEEee---cCCCCEEEEEEEecCC
Q 001987 538 LTVALVEGVNLASSEMTGLSDPYVVFTC--NGKTR----TSSVQLQTCDPQWHDILEFDAM---EEPPSVLDVEVFDFDG 608 (985)
Q Consensus 538 L~V~v~~a~~L~~~d~~g~~DPyv~v~~--~~~~~----kT~~~~~tlnP~Wne~f~f~v~---~~~~~~L~v~V~D~d~ 608 (985)
+.+.+..+.+.........+|-||.+.+ |++.. .|+.+.-...+.|||..+|++. -+....|.|+||+...
T Consensus 13 ~~~~~~~~~~~~l~~~~~~~~l~v~~~l~~g~~~l~~pv~t~~~~~~~~~~Wnewl~f~i~i~~LPr~a~L~~~i~~~~~ 92 (100)
T smart00142 13 LVITIALIHGIPLNWSRDYSDLYVEIQLYHGGKLLCLPVSTSYKPFFPSVKWNEWLTFPIQISDLPREARLCITIYEVKN 92 (100)
T ss_pred eEEEEEEeeCCCcccccCcceEEEEEEEEECCEEccCcEEecccCCCCCcccceeEEccCchhcCChhhEEEEEEEEeeC
Confidence 4556666666655443333588888755 55533 4554554566999999999852 2345699999998653
|
Outlier of C2 family. |
| >cd07821 PYR_PYL_RCAR_like Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins | Back alignment and domain information |
|---|
Probab=83.15 E-value=26 Score=33.16 Aligned_cols=131 Identities=7% Similarity=-0.000 Sum_probs=62.3
Q ss_pred EeeeecCChHHHHhccCCCchhHHHHHHcCCcceEEcccccCC-CCceeEEEEEEeccccCCCceeeeeEEEEeeccCC-
Q 001987 817 YNAELPISVKALMEMFDGGKLEHQVMEKSGCHNYVTTPWDLVK-PGVCERHLSYRFNRHVSIFGGEVTCTQQKSPLASG- 894 (985)
Q Consensus 817 ~~~~~p~~~~~~~~lf~~s~f~~~~~~~~~~~~~~~~~W~~~~-~~~~~R~~sy~~~~~~~~~~~~~~~~q~~~~~~~~- 894 (985)
.+.+++++++.+|+++.+-.-...++.. +..+. +.... ..+..|.+.+. .+ .... +......+.
T Consensus 5 ~~~~i~a~~~~V~~~l~d~~~~~~w~~~--~~~~~---~~~~~~~~g~~~~~~~~----~g---~~~~--~~i~~~~~~~ 70 (140)
T cd07821 5 VSVTIDAPADKVWALLSDFGGLHKWHPA--VASCE---LEGGGPGVGAVRTVTLK----DG---GTVR--ERLLALDDAE 70 (140)
T ss_pred EEEEECCCHHHHHHHHhCcCchhhhccC--cceEE---eecCCCCCCeEEEEEeC----CC---CEEE--EEehhcCccC
Confidence 4568899999999988443322233321 22222 22111 13445555543 12 1121 122222233
Q ss_pred CcEEEEEEEeeCCCCCCCeEEEEEEEEEEecCCCCCccEEEEEEEEEEEeeeeehhhhhhchHHHHHHHHHHHHH
Q 001987 895 EGWIVNEVMSLHDVPFDDHFRVHFRYEIEKSPLAHNACKCAIYIGISWLKSTKFQQRITQNITEKFTHRLKEMIE 969 (985)
Q Consensus 895 ~~~vv~~~~~~~dVPygd~F~v~~ry~i~~~~~~~~~~~l~v~~~v~~~k~t~~K~~Ie~~~~~g~~~~~~~~~~ 969 (985)
+.+.+...-. +-|+.+ ....|.++..++ ++|+|.......-... +.-..+.+....++++.++.|-+
T Consensus 71 ~~i~~~~~~~--~~~~~~---~~~~~~~~~~~~--~~t~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~L~~ 137 (140)
T cd07821 71 RRYSYRIVEG--PLPVKN---YVATIRVTPEGD--GGTRVTWTAEFDPPEG-LTDELARAFLTGVYRAGLAALKA 137 (140)
T ss_pred CEEEEEecCC--CCCccc---ceEEEEEEECCC--CccEEEEEEEEecCCC-cchHHHHHHHHHHHHHHHHHHHH
Confidence 4444432211 345443 578899998877 6787665554443332 33334444444444444444433
|
The PYR/PYL/RCAR-like family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. PYR/PYL/RCAR plant proteins are receptors involved in signal transduction. They bind abscisic acid (ABA) and mediate its signaling. ABA is a vital plant hormone, which regulates plant growth, development, and response to environmental stresses. Upon binding ABA, these plant proteins interact with a type 2C protein phosphatase (PP2C), such as ABI1 and ABI2, and inhibit their activity. When ABA is bound, a loop (designated the gate/CL2 loop) closes over the ligand binding pocket, resulting in the weakening of the inactive PYL dimer and facilitating type 2C protein phosphatase binding. In the ABA:PYL1:ABI1 complex, the gate |
| >cd00177 START Lipid-binding START domain of mammalian STARD1-STARD15 and related proteins | Back alignment and domain information |
|---|
Probab=82.52 E-value=37 Score=34.34 Aligned_cols=131 Identities=13% Similarity=0.072 Sum_probs=71.1
Q ss_pred EeeeecCChHHHHhccCCCchhHHHHHHcCCcceEEcccccCCCCceeEEEEEEeccccCCCceeeeeEEEEeeccCCCc
Q 001987 817 YNAELPISVKALMEMFDGGKLEHQVMEKSGCHNYVTTPWDLVKPGVCERHLSYRFNRHVSIFGGEVTCTQQKSPLASGEG 896 (985)
Q Consensus 817 ~~~~~p~~~~~~~~lf~~s~f~~~~~~~~~~~~~~~~~W~~~~~~~~~R~~sy~~~~~~~~~~~~~~~~q~~~~~~~~~~ 896 (985)
...++++++++++++|.+..+...+.. .+.+..+=.. ...+.......|....|+++.. -+. ........++..
T Consensus 43 ~~~~i~~~~~~v~~~l~d~~~~~~w~~--~~~~~~vl~~--~~~~~~i~~~~~~~p~p~~~Rd-fv~-~~~~~~~~~~~~ 116 (193)
T cd00177 43 AEGVIPASPEQVFELLMDIDLRKKWDK--NFEEFEVIEE--IDEHTDIIYYKTKPPWPVSPRD-FVY-LRRRRKLDDGTY 116 (193)
T ss_pred EEEEECCCHHHHHHHHhCCchhhchhh--cceEEEEEEE--eCCCeEEEEEEeeCCCccCCcc-EEE-EEEEEEcCCCeE
Confidence 456889999999997754443333221 1112221111 1112221222222122333322 121 112222335667
Q ss_pred EEEEEEEeeCCCCCC-CeEEEEEE---EEEEecCCCCCccEEEEEEEEEEEeeeeehhhhhhch
Q 001987 897 WIVNEVMSLHDVPFD-DHFRVHFR---YEIEKSPLAHNACKCAIYIGISWLKSTKFQQRITQNI 956 (985)
Q Consensus 897 ~vv~~~~~~~dVPyg-d~F~v~~r---y~i~~~~~~~~~~~l~v~~~v~~~k~t~~K~~Ie~~~ 956 (985)
+++..++..+++|-. ++-+.++. |+|++.++ ++|++.....++..++. -+..+.+.+
T Consensus 117 ~~~~~Si~~~~~p~~~~~vR~~~~~~~~~i~~~~~--~~~~vt~~~~~D~~g~i-P~~~~~~~~ 177 (193)
T cd00177 117 VIVSKSVDHDSHPKEKGYVRAEIKLSGWIIEPLDP--GKTKVTYVLQVDPKGSI-PKSLVNSAA 177 (193)
T ss_pred EEEEeecCCCCCCCCCCcEEEEEEccEEEEEECCC--CCEEEEEEEeeCCCCCc-cHHHHHhhh
Confidence 777777776667765 77777765 88998866 89999999999988753 244444444
|
This family includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and related domains, such as the START domain of the Arabidopsis homeobox protein GLABRA 2. The mammalian STARDs are grouped into 8 subfamilies. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some members of this family, specific lipids that bind in this pocket are known; these include cholesterol (STARD1/STARD3/ STARD4/STARD5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2/ STARD7/STARD10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). The START domain is found either alone or in association with other domains. Mammalian STARDs participate in the control of various cellular pro |
| >PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A | Back alignment and domain information |
|---|
Probab=81.93 E-value=4.9 Score=41.27 Aligned_cols=58 Identities=16% Similarity=0.298 Sum_probs=34.9
Q ss_pred EeecCccCCCCCeEeeEEEEEEe--cCCCceEEEEEEecCCCCCCCCCCCCeeEEEEEeCcc
Q 001987 32 SKSRILKNNSNPVWNEEFVFRVH--NIDDEELVVSVFQHNDDSGLFGSSGELMGRVRVPVSS 91 (985)
Q Consensus 32 ~kT~v~~~t~nP~wnE~f~f~v~--~~~~~~L~~~V~D~d~~~~~~~~~d~~lG~~~i~L~~ 91 (985)
..|.+...+.+|.|+|+|.+.++ ......|.|++++...+.. ..+...+|-+.+||-+
T Consensus 61 ~~S~v~yh~k~P~f~deiKi~LP~~l~~~~HLlFtf~h~s~~~~--~~~~~~~g~a~lpL~~ 120 (184)
T PF14429_consen 61 YYSSVYYHNKNPQFNDEIKIQLPPDLFPKHHLLFTFYHVSCKES--KEKSKPFGYAFLPLMD 120 (184)
T ss_dssp EE----TT-SS-EEEEEEEEEE-CCCCTTEEEEEEEEE---SSS--S-SS-EEEEEEEESB-
T ss_pred EEEEEEecCCCCCccEEEEEEcCchhcccEEEEEEEEeeccccc--cCccceeEEEEEEeee
Confidence 67778888899999999999998 3456789999999873211 0112689999999887
|
|
| >smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain | Back alignment and domain information |
|---|
Probab=81.06 E-value=7.2 Score=35.67 Aligned_cols=65 Identities=17% Similarity=0.311 Sum_probs=46.7
Q ss_pred EEEEEEEEeecCC------CCCcEEEEEE--CCeE----EeecCccCCCCCeEeeEEEEEEe---cCCCceEEEEEEecC
Q 001987 5 RLYVYVLQGQDLL------AKDSYVKVQI--GKHK----SKSRILKNNSNPVWNEEFVFRVH---NIDDEELVVSVFQHN 69 (985)
Q Consensus 5 ~L~V~V~~Ar~L~------~~DPyv~v~l--~~~~----~kT~v~~~t~nP~wnE~f~f~v~---~~~~~~L~~~V~D~d 69 (985)
.+.+++..+.++. .++-||.+.+ +++. ..|..+.-...+.|||...|++. -+....|.|.||+..
T Consensus 12 ~~~~~~~~~~~~~l~~~~~~~~l~v~~~l~~g~~~l~~pv~t~~~~~~~~~~Wnewl~f~i~i~~LPr~a~L~~~i~~~~ 91 (100)
T smart00142 12 NLVITIALIHGIPLNWSRDYSDLYVEIQLYHGGKLLCLPVSTSYKPFFPSVKWNEWLTFPIQISDLPREARLCITIYEVK 91 (100)
T ss_pred ceEEEEEEeeCCCcccccCcceEEEEEEEEECCEEccCcEEecccCCCCCcccceeEEccCchhcCChhhEEEEEEEEee
Confidence 4667777777777 2377888866 3332 35555544566999999999865 467789999999976
|
Outlier of C2 family. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 985 | ||||
| 3kwt_A | 148 | Munc13-1 C2b-Domain, Calcium-Free Length = 148 | 3e-07 | ||
| 2nsq_A | 155 | Crystal Structure Of The C2 Domain Of The Human E3 | 3e-05 | ||
| 3hn8_A | 296 | Crystal Structure Of Synaptotagmin Length = 296 | 3e-05 | ||
| 1dqv_A | 296 | Crystal Structure Of Synaptotagmin Iii C2aC2B Lengt | 3e-05 | ||
| 2ep6_A | 133 | Solution Structure Of The Second C2 Domain From Hum | 3e-04 | ||
| 3jzy_A | 510 | Crystal Structure Of Human Intersectin 2 C2 Domain | 8e-04 | ||
| 3b7y_A | 153 | Crystal Structure Of The C2 Domain Of The E3 Ubiqui | 8e-04 |
| >pdb|3KWT|A Chain A, Munc13-1 C2b-Domain, Calcium-Free Length = 148 | Back alignment and structure |
|
| >pdb|2NSQ|A Chain A, Crystal Structure Of The C2 Domain Of The Human E3 Ubiquitin-Protein Ligase Nedd4-Like Protein Length = 155 | Back alignment and structure |
|
| >pdb|3HN8|A Chain A, Crystal Structure Of Synaptotagmin Length = 296 | Back alignment and structure |
|
| >pdb|1DQV|A Chain A, Crystal Structure Of Synaptotagmin Iii C2aC2B Length = 296 | Back alignment and structure |
|
| >pdb|2EP6|A Chain A, Solution Structure Of The Second C2 Domain From Human Mctp2 Protein Length = 133 | Back alignment and structure |
|
| >pdb|3JZY|A Chain A, Crystal Structure Of Human Intersectin 2 C2 Domain Length = 510 | Back alignment and structure |
|
| >pdb|3B7Y|A Chain A, Crystal Structure Of The C2 Domain Of The E3 Ubiquitin- Protein Ligase Nedd4 Length = 153 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} PDB: 3kwt_A* Length = 148 | Back alignment and structure |
|---|
Score = 104 bits (260), Expect = 4e-26
Identities = 42/142 (29%), Positives = 65/142 (45%), Gaps = 21/142 (14%)
Query: 3 STRLYVYVLQGQDLLAKDS------YVKVQIGKHKSKSRILKNNSNPVWNEEFVFRVHNI 56
S ++ + V+ Q L AKD YV VQ+GK K +++ + N NPVW E F F HN
Sbjct: 16 SAKISITVVCAQGLQAKDKTGSSDPYVTVQVGKTKKRTKTIYGNLNPVWEENFHFECHNS 75
Query: 57 DDEELVVSVFQHNDD------SGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETP 110
D + V V +DD S + +G+ + V +++ E W++L+
Sbjct: 76 SD-RIKVRVLDEDDDIKSRVKQRFKRESDDFLGQTIIEVRTLSGEM-----DVWYNLD-- 127
Query: 111 KTRKFTNKDCGKILLTISLNGK 132
R + G I L IS+ K
Sbjct: 128 -KRTDKSAVSGAIRLHISVEIK 148
|
| >3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} PDB: 3kwt_A* Length = 148 | Back alignment and structure |
|---|
Score = 76.0 bits (187), Expect = 2e-16
Identities = 30/132 (22%), Positives = 51/132 (38%), Gaps = 14/132 (10%)
Query: 537 VLTVALVEGVNLASSEMTGLSDPYVVFTCNGKTRTSSVQLQTCDPQWHDILEFDAMEEPP 596
+++ +V L + + TG SDPYV + + +P W + F+
Sbjct: 18 KISITVVCAQGLQAKDKTGSSDPYVTVQVGKTKKRTKTIYGNLNPVWEENFHFE-CHNSS 76
Query: 597 SVLDVEVFDFDGPFDQATS----------LGHAEINFLKHTSTELADMWVSLEGKLAQSA 646
+ V V D D LG I ++ S E D+W +L+ + +SA
Sbjct: 77 DRIKVRVLDEDDDIKSRVKQRFKRESDDFLGQTIIE-VRTLSGE-MDVWYNLDKRTDKSA 134
Query: 647 QS-KVHLRIFLE 657
S + L I +E
Sbjct: 135 VSGAIRLHISVE 146
|
| >2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1 Length = 133 | Back alignment and structure |
|---|
Score = 99.3 bits (248), Expect = 1e-24
Identities = 36/131 (27%), Positives = 58/131 (44%), Gaps = 20/131 (15%)
Query: 5 RLYVYVLQGQDLLAKDS------YVKVQIGKHKSKSRILKNNSNPVWNEEFVFRVHNIDD 58
L V VL+ DLLA D + +++G + ++ + N NP WN+ F F + +I D
Sbjct: 14 ILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPIKDIHD 73
Query: 59 EELVVSVFQHNDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTNK 118
L V+VF + D + +G+V +P+ SI P + L K +
Sbjct: 74 -VLEVTVFDEDGD-----KPPDFLGKVAIPLLSIRDGQ-----PNCYVL---KNKDLEQA 119
Query: 119 DCGKILLTISL 129
G I L + L
Sbjct: 120 FKGVIYLEMDL 130
|
| >2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1 Length = 133 | Back alignment and structure |
|---|
Score = 86.2 bits (214), Expect = 5e-20
Identities = 32/137 (23%), Positives = 58/137 (42%), Gaps = 8/137 (5%)
Query: 524 GSDHGVKAQGDGWVLTVALVEGVNLASSEMTGLSDPYVVFTCNGKTRTSSVQLQTCDPQW 583
GS VK G +L V +++ +L +++ +G SDP+ + + + +P+W
Sbjct: 4 GSSGDVKDVG---ILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEW 60
Query: 584 HDILEFDAMEEPPSVLDVEVFDFDGPFDQATSLGHAEINFLKHTSTELADMWVSLEGKLA 643
+ + F +++ VL+V VFD D LG I L L+ K
Sbjct: 61 NKVFTFP-IKDIHDVLEVTVFDED-GDKPPDFLGKVAIP-LLSIRDG-QPNCYVLKNKDL 116
Query: 644 QSAQS-KVHLRIFLENN 659
+ A ++L + L N
Sbjct: 117 EQAFKGVIYLEMDLIYN 133
|
| >3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus} Length = 176 | Back alignment and structure |
|---|
Score = 97.3 bits (242), Expect = 2e-23
Identities = 35/148 (23%), Positives = 59/148 (39%), Gaps = 18/148 (12%)
Query: 6 LYVYVLQGQDLLAKDS------YVKVQIG------KHKSKSRILKNNSNPVWNEEFVFRV 53
+ V V+ G L KD YV+V + +++ +K + NP WNEE +FRV
Sbjct: 10 VRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEILFRV 69
Query: 54 HNIDDEELVVSVFQHNDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTR 113
++ VF D + +G+V VP+ + E+ M P F R
Sbjct: 70 LP-QRHRILFEVF----DENRLTRD-DFLGQVDVPLYPLPTENPRMERPYTFKDFVLHPR 123
Query: 114 KFTNKDCGKILLTISLNGKGHNLSSNRL 141
++ G + L ++ K + N
Sbjct: 124 SHKSRVKGYLRLKMTYLPKNGSEDENAD 151
|
| >3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus} Length = 176 | Back alignment and structure |
|---|
Score = 61.4 bits (149), Expect = 6e-11
Identities = 29/142 (20%), Positives = 52/142 (36%), Gaps = 15/142 (10%)
Query: 537 VLTVALVEGVNLASSEMTGLSDPYVVFTCNGKTRTSSVQLQT------CDPQWHDILEFD 590
V+ V ++ G+ LA ++ G SDPYV T +QT +P+W++ + F
Sbjct: 9 VVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEILFR 68
Query: 591 AMEEPPSVLDVEVFDFDGPFDQATSLGHAEINFL------KHTSTELADMWVSLEGKLAQ 644
+ + EVFD + + LG ++ L + +
Sbjct: 69 -VLPQRHRILFEVFDENR-LTRDDFLGQVDVPLYPLPTENPRMERPYTFKDFVLHPRSHK 126
Query: 645 SAQS-KVHLRIFLENNNGVETI 665
S + L++ NG E
Sbjct: 127 SRVKGYLRLKMTYLPKNGSEDE 148
|
| >3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A Length = 153 | Back alignment and structure |
|---|
Score = 96.4 bits (240), Expect = 2e-23
Identities = 35/140 (25%), Positives = 59/140 (42%), Gaps = 18/140 (12%)
Query: 3 STRLYVYVLQGQDLLAKDS------YVKVQIG------KHKSKSRILKNNSNPVWNEEFV 50
S + V V+ G L KD YV+V + +++ +K + NP WNEE +
Sbjct: 19 SRIVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEEIL 78
Query: 51 FRVHNIDDEELVVSVFQHNDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETP 110
FRVH L+ VF N + + +G+V VP+ + E+ + P F
Sbjct: 79 FRVHPQQH-RLLFEVFDEN-----RLTRDDFLGQVDVPLYPLPTENPRLERPYTFKDFVL 132
Query: 111 KTRKFTNKDCGKILLTISLN 130
R ++ G + L ++
Sbjct: 133 HPRSHKSRVKGYLRLKMTYL 152
|
| >3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A Length = 153 | Back alignment and structure |
|---|
Score = 62.5 bits (152), Expect = 2e-11
Identities = 26/139 (18%), Positives = 53/139 (38%), Gaps = 15/139 (10%)
Query: 529 VKAQGDGWVLTVALVEGVNLASSEMTGLSDPYVVFTCNGKTRTSSVQLQT------CDPQ 582
++ + + ++ V ++ G+ LA ++ G SDPYV T +QT +P+
Sbjct: 13 LEDEENSRIVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPK 72
Query: 583 WHDILEFDAMEEPPSVLDVEVFDFDGPFDQATSLGHAEIN------FLKHTSTELADMWV 636
W++ + F + L EVFD + + LG ++
Sbjct: 73 WNEEILFR-VHPQQHRLLFEVFDENR-LTRDDFLGQVDVPLYPLPTENPRLERPYTFKDF 130
Query: 637 SLEGKLAQSAQS-KVHLRI 654
L + +S + L++
Sbjct: 131 VLHPRSHKSRVKGYLRLKM 149
|
| >2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1 Length = 131 | Back alignment and structure |
|---|
Score = 94.3 bits (234), Expect = 7e-23
Identities = 30/139 (21%), Positives = 61/139 (43%), Gaps = 19/139 (13%)
Query: 1 MVSTRLYVYVLQGQDLLAKDS---YVKVQIGKHKSKSRILKNNSNPVWNEEFVFRVHNID 57
V + L V V + + A++ YV +++ KS + ++ S P W ++F+F ++ +
Sbjct: 2 GVMSLLCVGVKKAKFDGAQEKFNTYVTLKVQNVKSTTIAVRG-SQPSWEQDFMFEINRL- 59
Query: 58 DEELVVSVFQHNDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTN 117
D L V V+ + GL ++G V +P+ +I + P W +L++
Sbjct: 60 DLGLTVEVW----NKGLIWD--TMVGTVWIPLRTIRQSNEE-GPGEWLTLDSQ-----AI 107
Query: 118 KDCGKILLTISLNGKGHNL 136
+I T + H +
Sbjct: 108 MADSEICGT--KDPTFHRI 124
|
| >2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1 Length = 131 | Back alignment and structure |
|---|
Score = 45.0 bits (106), Expect = 1e-05
Identities = 17/108 (15%), Positives = 42/108 (38%), Gaps = 9/108 (8%)
Query: 537 VLTVALVEGVNLASSEMTGLSDPYVVFTCNGKTRTSSVQLQTCDPQWHDILEFDAMEEPP 596
+L V + + + + YV +++++ ++ P W F +
Sbjct: 6 LLCVGVKKAKFDGA---QEKFNTYVTLKV-QNVKSTTIAVRGSQPSWEQDFMF-EINRLD 60
Query: 597 SVLDVEVFDFDGPFDQATSLGHAEI--NFLKHTSTELADMWVSLEGKL 642
L VEV++ +D +G I ++ ++ E W++L+ +
Sbjct: 61 LGLTVEVWNKGLIWDTM--VGTVWIPLRTIRQSNEEGPGEWLTLDSQA 106
|
| >2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1 Length = 167 | Back alignment and structure |
|---|
Score = 95.5 bits (237), Expect = 7e-23
Identities = 29/161 (18%), Positives = 71/161 (44%), Gaps = 19/161 (11%)
Query: 1 MVSTRLYVYVLQGQDLLAKD---SYVKVQIGKHKSKSRILKNNSNPVWNEEFVFRVHNID 57
+ + L V V + + A++ +YV +++ +S + ++ + P W ++F+F ++ +
Sbjct: 11 GILSLLCVGVKKAKFDGAQEKFNTYVTLKVQNVESTTIAVRGS-QPSWEQDFMFEINRL- 68
Query: 58 DEELVVSVFQHNDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTN 117
D L V V+ + GL ++G V +P+ +I + P W +L+ + +
Sbjct: 69 DLGLTVEVW----NKGLIWD--TMVGTVWIPLRTIRQSNEE-GPGEWLTLD-SQAIMADS 120
Query: 118 KDCGKILLTISLNGKGHNLSSNRLLYLHSNVSSNESKELED 158
+ CG + + H + + L ++ E++
Sbjct: 121 EICG------TKDPTFHRILLDAHFELPLDIPEEEARYWAK 155
|
| >2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1 Length = 167 | Back alignment and structure |
|---|
Score = 43.5 bits (102), Expect = 7e-05
Identities = 17/108 (15%), Positives = 41/108 (37%), Gaps = 9/108 (8%)
Query: 537 VLTVALVEGVNLASSEMTGLSDPYVVFTCNGKTRTSSVQLQTCDPQWHDILEFDAMEEPP 596
+L V + + + + YV ++++ ++ P W F+
Sbjct: 15 LLCVGVKKAKFDGA---QEKFNTYVTLKV-QNVESTTIAVRGSQPSWEQDFMFEI-NRLD 69
Query: 597 SVLDVEVFDFDGPFDQATSLGHAEI--NFLKHTSTELADMWVSLEGKL 642
L VEV++ +D +G I ++ ++ E W++L+ +
Sbjct: 70 LGLTVEVWNKGLIWDTM--VGTVWIPLRTIRQSNEEGPGEWLTLDSQA 115
|
| >2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 140 | Back alignment and structure |
|---|
Score = 92.1 bits (229), Expect = 6e-22
Identities = 31/134 (23%), Positives = 47/134 (35%), Gaps = 17/134 (12%)
Query: 5 RLYVYVLQGQDLLAKDS-----YVKVQIGKHKSKSRILKNNSNPVWNEEFVFRVHNID-- 57
L V V ++ V V K K++ + N NPVWNE F + I
Sbjct: 8 MLRVIVESASNIPKTKFGKPDPIVSVIFKDEKKKTKKVDNELNPVWNEILEFDLRGIPLD 67
Query: 58 -DEELVVSVFQHNDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFT 116
L + V D G + +L+G V + + + + LP SL K +
Sbjct: 68 FSSSLGIIVK----DFETIGQN-KLIGTATVALKDLTGDQSRSLPYKLISLLNEKGQ--- 119
Query: 117 NKDCGKILLTISLN 130
I L I +
Sbjct: 120 -DTGATIDLVIGYD 132
|
| >2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 140 | Back alignment and structure |
|---|
Score = 73.6 bits (181), Expect = 1e-15
Identities = 30/130 (23%), Positives = 52/130 (40%), Gaps = 8/130 (6%)
Query: 531 AQGDGWVLTVALVEGVNLASSEMTGLSDPYVVFTCNGKTRTSSVQLQTCDPQWHDILEFD 590
+ G +L V + N+ ++ G DP V + + + +P W++ILEFD
Sbjct: 2 SSGSSGMLRVIVESASNIPKTK-FGKPDPIVSVIFKDEKKKTKKVDNELNPVWNEILEFD 60
Query: 591 AMEEPP---SVLDVEVFDFDGPFDQATSLGHAEINFLKHTSTELADMW---VSLEGKLAQ 644
P S L + V DF+ Q +G A + T + + +SL + Q
Sbjct: 61 LRGIPLDFSSSLGIIVKDFET-IGQNKLIGTATVALKDLTGDQSRSLPYKLISLLNEKGQ 119
Query: 645 SAQSKVHLRI 654
+ + L I
Sbjct: 120 DTGATIDLVI 129
|
| >1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2 Length = 136 | Back alignment and structure |
|---|
Score = 90.5 bits (225), Expect = 1e-21
Identities = 28/131 (21%), Positives = 53/131 (40%), Gaps = 21/131 (16%)
Query: 5 RLYVYVLQGQDLLAKDS------YVKVQIGKHKSKSR-ILKNNSNPVWNEEFVFRVHNID 57
L V ++ + L D YV++ KS + P WNE F+F V
Sbjct: 11 TLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSE-G 69
Query: 58 DEELVVSVFQHNDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTN 117
EL +F + G+ + +G +P+ + E + +PPT +++ +
Sbjct: 70 TTELKAKIFDKD-----VGTEDDAVGEATIPLEPVFVEGS--IPPTAYNVVKDE------ 116
Query: 118 KDCGKILLTIS 128
+ G+I + +S
Sbjct: 117 EYKGEIWVALS 127
|
| >1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2 Length = 136 | Back alignment and structure |
|---|
Score = 78.9 bits (195), Expect = 2e-17
Identities = 25/133 (18%), Positives = 49/133 (36%), Gaps = 9/133 (6%)
Query: 524 GSDHGVKAQGDGWVLTVALVEGVNLASSEMTGLSDPYVVFTCNG-KTRTSSVQLQTCDPQ 582
GS G L V LV L ++ DPYV TC +++ + P+
Sbjct: 1 GSSGSSGPHG---TLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPE 57
Query: 583 WHDILEFDAMEEPPSVLDVEVFDFDGPFDQATSLGHAEINFLKH-TSTELADMWVSLEGK 641
W++ F E + L ++FD D + ++G A I + ++
Sbjct: 58 WNETFIFTV-SEGTTELKAKIFDKD-VGTEDDAVGEATIPLEPVFVEGSIPPTAYNVVKD 115
Query: 642 LAQSAQSKVHLRI 654
+ + ++ + +
Sbjct: 116 --EEYKGEIWVAL 126
|
| >2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1 Length = 173 | Back alignment and structure |
|---|
Score = 91.9 bits (228), Expect = 2e-21
Identities = 26/133 (19%), Positives = 48/133 (36%), Gaps = 16/133 (12%)
Query: 5 RLYVYVLQGQDLLAKDS------YVKVQIGKHKSKSRILKNNSNPVWNEEFVFRVHNIDD 58
+L + V+ + K + YV+V + K+ N ++P W + V
Sbjct: 37 QLQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTEKCNNTNSPKWKQPLTVIVT--PV 94
Query: 59 EELVVSVFQHNDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTNK 118
+L V+ H S L+G + + +N L +L+ K +
Sbjct: 95 SKLHFRVWSHQ-----TLKSDVLLGTAALDIYETLKSNNMKLEEVVVTLQ-LGGDKEPTE 148
Query: 119 DCGKILLTISLNG 131
G L+I L+G
Sbjct: 149 TIGD--LSICLDG 159
|
| >2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1 Length = 173 | Back alignment and structure |
|---|
Score = 82.2 bits (203), Expect = 3e-18
Identities = 25/125 (20%), Positives = 48/125 (38%), Gaps = 7/125 (5%)
Query: 538 LTVALVEGVNLASSEMTGLSDPYVVFTCNGKTRTSSVQLQTCDPQWHDILEFDAMEEPPS 597
L + ++ + + PYV T +G+++ + T P+W L P S
Sbjct: 38 LQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTEKCNNTNSPKWKQPLTVIV--TPVS 95
Query: 598 VLDVEVFDFDGPFDQATSLGHAEIN---FLKHTSTELADMWVSLEGKLAQSAQSKV-HLR 653
L V+ LG A ++ LK + +L ++ V+L+ + + L
Sbjct: 96 KLHFRVWSHQ-TLKSDVLLGTAALDIYETLKSNNMKLEEVVVTLQLGGDKEPTETIGDLS 154
Query: 654 IFLEN 658
I L+
Sbjct: 155 ICLDG 159
|
| >3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A Length = 132 | Back alignment and structure |
|---|
Score = 87.0 bits (216), Expect = 2e-20
Identities = 24/140 (17%), Positives = 54/140 (38%), Gaps = 25/140 (17%)
Query: 3 STRLYVYVLQGQDLLAKDS------YVKVQI--GKHKSKSRILKNNSNPVWNEEFVFRVH 54
++ + VL ++L KD + K+ + + +KN +P WN+ + V
Sbjct: 4 FIKIRLTVLCAKNLAKKDFFRLPDPFAKIVVDGSGQCHSTDTVKNTLDPKWNQHYDLYVG 63
Query: 55 NIDDEELVVSVFQHN----DDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETP 110
+ + +SV+ H F +G VR+ ++I+ + + L+
Sbjct: 64 --KTDSITISVWNHKKIHKKQGAGF------LGCVRLLSNAISRLKDT----GYQRLDLC 111
Query: 111 KTRKFTN-KDCGKILLTISL 129
K G+I++++
Sbjct: 112 KLNPSDTDAVRGQIVVSLQT 131
|
| >3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A Length = 132 | Back alignment and structure |
|---|
Score = 66.6 bits (163), Expect = 3e-13
Identities = 19/125 (15%), Positives = 41/125 (32%), Gaps = 8/125 (6%)
Query: 538 LTVALVEGVNLASSEMTGLSDPYVVFT--CNGKTRTSSVQLQTCDPQWHDILEFDAMEEP 595
+ + ++ NLA + L DP+ +G+ ++ T DP+W+ +
Sbjct: 7 IRLTVLCAKNLAKKDFFRLPDPFAKIVVDGSGQCHSTDTVKNTLDPKWNQHYDLY--VGK 64
Query: 596 PSVLDVEVFDFDGPF--DQATSLGHAEINFLKHTSTELADMWVSLEGKLAQS-AQSKVHL 652
+ + V++ A LG + S + L+ V
Sbjct: 65 TDSITISVWNHKKIHKKQGAGFLGCVRLL-SNAISRLKDTGYQRLDLCKLNPSDTDAVRG 123
Query: 653 RIFLE 657
+I +
Sbjct: 124 QIVVS 128
|
| >1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1 Length = 126 | Back alignment and structure |
|---|
Score = 83.9 bits (208), Expect = 3e-19
Identities = 25/122 (20%), Positives = 44/122 (36%), Gaps = 21/122 (17%)
Query: 3 STRLYVYVLQGQDLLAKDS---------YVKVQIG---KHKSKSRILKNNSNPVWNEEFV 50
S + V VL+ + YV++ I + ++R N+ NPVWNE F
Sbjct: 2 SHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFE 61
Query: 51 FRVHNIDDEELVVSVFQHNDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETP 110
F + + L +++ D+ E +G VSS+ + + F
Sbjct: 62 FILDPNQENVLEITLM----DANYVMD--ETLGTATFTVSSMKVGEKKEV---PFIFNQV 112
Query: 111 KT 112
Sbjct: 113 TE 114
|
| >1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1 Length = 126 | Back alignment and structure |
|---|
Score = 68.9 bits (169), Expect = 4e-14
Identities = 20/128 (15%), Positives = 46/128 (35%), Gaps = 12/128 (9%)
Query: 538 LTVALVEGVNL---ASSEMTGLSDPYVVFTCNG---KTRTSSVQLQTCDPQWHDILEFDA 591
TV ++ + A +M DPYV + + + +P W++ EF
Sbjct: 5 FTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFIL 64
Query: 592 MEEPPSVLDVEVFDFDGPFDQATSLGHAEINFLKHTSTELADMWVSLEGKLAQSAQSKVH 651
+VL++ + D + D+ +LG A E ++ + +
Sbjct: 65 DPNQENVLEITLMDANYVMDE--TLGTATFTVSSMKVGEKKEVPFIFNQV----TEMVLE 118
Query: 652 LRIFLENN 659
+ + + ++
Sbjct: 119 MSLEVASS 126
|
| >1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1 Length = 136 | Back alignment and structure |
|---|
Score = 83.7 bits (207), Expect = 4e-19
Identities = 19/150 (12%), Positives = 48/150 (32%), Gaps = 36/150 (24%)
Query: 1 MVSTRLYVYVLQGQDLLAKDS-----------------YVKVQIGKHK-SKSRILKNNSN 42
+ + L + + + L Y+ + + + ++ + ++
Sbjct: 3 VFNGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNS 62
Query: 43 PVWNEEFVFRVHNIDDEELVVSVFQHNDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPP 102
P W++EFV V + ++ ++VF + + + + +
Sbjct: 63 PAWHDEFVTDVC--NGRKIELAVFHDAP-----IGYDDFVANCTIQFEELLQNGSRHF-E 114
Query: 103 TWFSLETPKTRKFTNKDCGKILLTISLNGK 132
W LE GK+ + I L+G
Sbjct: 115 DWIDLEP----------EGKVYVIIDLSGS 134
|
| >1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1 Length = 136 | Back alignment and structure |
|---|
Score = 78.7 bits (194), Expect = 2e-17
Identities = 30/139 (21%), Positives = 54/139 (38%), Gaps = 23/139 (16%)
Query: 537 VLTVALVEGVNL-----------ASSEMTGLSDPYVVFTCNG-KTRTSSVQLQTCDPQWH 584
+L + + E V+L T L DPY+ + + ++ + +T P WH
Sbjct: 7 LLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAWH 66
Query: 585 DILEFDAMEEPPSVLDVEVFDFDGPFDQATSLGHAEINF--LKHTSTELADMWVSLEGKL 642
D EF +++ VF P + + I F L + + W+ LE
Sbjct: 67 D--EFVTDVCNGRKIELAVFHDA-PIGYDDFVANCTIQFEELLQNGSRHFEDWIDLEP-- 121
Query: 643 AQSAQSKVHLRIFLENNNG 661
+ KV++ I L ++G
Sbjct: 122 ----EGKVYVIIDLSGSSG 136
|
| >3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} Length = 153 | Back alignment and structure |
|---|
Score = 82.4 bits (204), Expect = 2e-18
Identities = 25/124 (20%), Positives = 55/124 (44%), Gaps = 17/124 (13%)
Query: 5 RLYVYVLQGQDLLAKDS-----YVKVQI-----GKHKSKSRILKNNSNPVWNEEFVFRVH 54
L +++++G+ L++K YVK+ + K++ + + +P ++E F F V
Sbjct: 28 VLLLHIIEGKGLISKQPGTCDPYVKISLIPEDSRLRHQKTQTVPDCRDPAFHEHFFFPVQ 87
Query: 55 NIDDEE-LVVSVFQHNDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTR 113
DD++ L+V+V+ + L+G + V S+ D + W+ L
Sbjct: 88 EEDDQKRLLVTVW----NRASQSRQSGLIGCMSFGVKSLLTPDKEI--SGWYYLLGEHLG 141
Query: 114 KFTN 117
+ +
Sbjct: 142 RTKH 145
|
| >3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} Length = 153 | Back alignment and structure |
|---|
Score = 55.5 bits (134), Expect = 4e-09
Identities = 32/151 (21%), Positives = 51/151 (33%), Gaps = 23/151 (15%)
Query: 522 RKGSDHGVKAQGDGWV----------LTVALVEGVNLASSEMTGLSDPYV-VF-----TC 565
H K QG G + L + ++EG L S + G DPYV + +
Sbjct: 3 HHHHHHSHKVQGAGQLRLSIDAQDRVLLLHIIEGKGLISKQ-PGTCDPYVKISLIPEDSR 61
Query: 566 NGKTRTSSVQLQTCDPQWHDILEFD-AMEEPPSVLDVEVFDFDGPFDQATSLGHAEINFL 624
+T DP +H+ F E+ L V V++ Q+ +G
Sbjct: 62 LRHQKTQ-TVPDCRDPAFHEHFFFPVQEEDDQKRLLVTVWNRASQSRQSGLIGCMSFGVK 120
Query: 625 K-HTSTELADMWVSLEGKLAQSAQSKVHLRI 654
T + W L L + HL++
Sbjct: 121 SLLTPDKEISGWYYL---LGEHLGRTKHLKV 148
|
| >2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens} Length = 157 | Back alignment and structure |
|---|
Score = 81.2 bits (200), Expect = 5e-18
Identities = 24/144 (16%), Positives = 41/144 (28%), Gaps = 35/144 (24%)
Query: 6 LYVYVLQGQDLLAKDS----------------YVKVQIG-KHKSKSRILKNNSNPVWNEE 48
L V + + L Y+ V + ++ + + P +NEE
Sbjct: 31 LRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSVDQVRVGQTSTKQKTNKPTYNEE 90
Query: 49 FVFRVHNIDDEELVVSVFQHNDDSGLFGSSGELMGRVRVPVSSIAAEDN-HMLPPTWFSL 107
F V D L ++VF G + + + W L
Sbjct: 91 FCANVT--DGGHLELAVF----HETPLGYD-HFVANCTLQFQELLRTTGASDTFEGWVDL 143
Query: 108 ETPKTRKFTNKDCGKILLTISLNG 131
E GK+ + I+L G
Sbjct: 144 EP----------EGKVFVVITLTG 157
|
| >2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens} Length = 157 | Back alignment and structure |
|---|
Score = 68.1 bits (166), Expect = 2e-13
Identities = 28/136 (20%), Positives = 51/136 (37%), Gaps = 24/136 (17%)
Query: 537 VLTVALVEGVNL----------ASSEMTGLSDPYVVFTCNG-KTRTSSVQLQTCDPQWHD 585
L V + E V L + L DPY+ + + + +S + +T P +++
Sbjct: 30 YLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSVDQVRVGQTSTKQKTNKPTYNE 89
Query: 586 ILEFDAMEEPPSVLDVEVFDFDGPFDQATSLGHAEINF----LKHTSTELADMWVSLEGK 641
EF A L++ VF P + + + F +++ + WV LE
Sbjct: 90 --EFCANVTDGGHLELAVFHET-PLGYDHFVANCTLQFQELLRTTGASDTFEGWVDLEP- 145
Query: 642 LAQSAQSKVHLRIFLE 657
+ KV + I L
Sbjct: 146 -----EGKVFVVITLT 156
|
| >1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2 Length = 149 | Back alignment and structure |
|---|
Score = 80.5 bits (199), Expect = 7e-18
Identities = 30/125 (24%), Positives = 54/125 (43%), Gaps = 21/125 (16%)
Query: 5 RLYVYVLQGQDLLAKDS------YVKVQI-----GKHKSKSRILKNNSNPVWNEEFVFRV 53
L V V ++L+ D YVK+++ + K K++ +K + NP WNE F F++
Sbjct: 32 VLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQL 91
Query: 54 HNID-DEELVVSVFQHNDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKT 112
D D L V ++ + S + MG + +S + WF L + +
Sbjct: 92 KESDKDRRLSVEIWDWD-----LTSRNDFMGSLSFGISELQKAG----VDGWFKLLSQEE 142
Query: 113 RKFTN 117
++ N
Sbjct: 143 GEYFN 147
|
| >1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2 Length = 149 | Back alignment and structure |
|---|
Score = 63.6 bits (155), Expect = 6e-12
Identities = 26/119 (21%), Positives = 47/119 (39%), Gaps = 8/119 (6%)
Query: 529 VKAQGDGWVLTVALVEGVNLASSEMTGLSDPYVVFTC-----NGKTRTSSVQLQTCDPQW 583
++A D VL V + + NL + GLSDPYV + + + + +P+W
Sbjct: 24 IQAHIDREVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEW 83
Query: 584 HDILEFD-AMEEPPSVLDVEVFDFDGPFDQATSLGHAEINFLKHTSTELADMWVSLEGK 641
++ F + L VE++D+D + +G + D W L +
Sbjct: 84 NETFRFQLKESDKDRRLSVEIWDWD-LTSRNDFMGSLSFG-ISELQKAGVDGWFKLLSQ 140
|
| >1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2 Length = 152 | Back alignment and structure |
|---|
Score = 78.2 bits (193), Expect = 5e-17
Identities = 30/118 (25%), Positives = 59/118 (50%), Gaps = 19/118 (16%)
Query: 5 RLYVYVLQGQDLLAKDS------YVKVQI---GKHKSKSRILKNNSNPVWNEEFVFRVH- 54
+L V ++Q +L A D YVKV + K K ++++ + NPV+NE+F F+V
Sbjct: 43 QLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPY 102
Query: 55 -NIDDEELVVSVFQHNDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPK 111
+ + LV++V+ D S +++G +VP++++ W L++ +
Sbjct: 103 SELGGKTLVMAVY-DFD----RFSKHDIIGEFKVPMNTVDFGHVT---EEWRDLQSAE 152
|
| >1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2 Length = 152 | Back alignment and structure |
|---|
Score = 56.3 bits (136), Expect = 2e-09
Identities = 27/109 (24%), Positives = 48/109 (44%), Gaps = 6/109 (5%)
Query: 538 LTVALVEGVNLASSEMTGLSDPYV-VFTCNGKTRT--SSVQLQTCDPQWHDILEFD-AME 593
L V +++ L + +M G SDPYV VF K + + V +T +P +++ F
Sbjct: 44 LLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYS 103
Query: 594 EPPS-VLDVEVFDFDGPFDQATSLGHAEINFLKHTSTELADMWVSLEGK 641
E L + V+DFD F + +G ++ + + W L+
Sbjct: 104 ELGGKTLVMAVYDFD-RFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQSA 151
|
| >3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A* Length = 143 | Back alignment and structure |
|---|
Score = 77.8 bits (192), Expect = 6e-17
Identities = 30/116 (25%), Positives = 58/116 (50%), Gaps = 19/116 (16%)
Query: 5 RLYVYVLQGQDLLAKDS------YVKVQI---GKHKSKSRILKNNSNPVWNEEFVFRVH- 54
+L V ++Q +L A D YVKV + K K ++++ + NPV+NE+F F+V
Sbjct: 35 QLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPY 94
Query: 55 -NIDDEELVVSVFQHNDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLET 109
+ + LV++V+ D F +++G +VP++++ W L++
Sbjct: 95 SELGGKTLVMAVY----DFDRFSKH-DIIGEFKVPMNTVDFGHVT---EEWRDLQS 142
|
| >3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A* Length = 143 | Back alignment and structure |
|---|
Score = 56.6 bits (137), Expect = 1e-09
Identities = 25/107 (23%), Positives = 46/107 (42%), Gaps = 6/107 (5%)
Query: 538 LTVALVEGVNLASSEMTGLSDPYV---VFTCNGKTRTSSVQLQTCDPQWHDILEFD-AME 593
L V +++ L + +M G SDPYV + K + V +T +P +++ F
Sbjct: 36 LLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYS 95
Query: 594 EPPS-VLDVEVFDFDGPFDQATSLGHAEINFLKHTSTELADMWVSLE 639
E L + V+DFD F + +G ++ + + W L+
Sbjct: 96 ELGGKTLVMAVYDFD-RFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQ 141
|
| >2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 141 | Back alignment and structure |
|---|
Score = 77.0 bits (190), Expect = 1e-16
Identities = 29/124 (23%), Positives = 53/124 (42%), Gaps = 20/124 (16%)
Query: 3 STRLYVYVLQGQDLLAKDS------YVKVQI---GKHKSKSRILKNNSNPVWNEEFVFRV 53
+ L V +++ Q+L AKD +VK+ + KHK ++++ + N NP WNE F+F
Sbjct: 25 ESTLTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEG 84
Query: 54 HNIDD---EELVVSVFQHNDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETP 110
+ L + V D F + + +G V +P++ + W L+
Sbjct: 85 FPYEKVVQRILYLQVL----DYDRFSRN-DPIGEVSIPLNKVDLTQMQ---TFWKDLKPS 136
Query: 111 KTRK 114
Sbjct: 137 GPSS 140
|
| >2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 141 | Back alignment and structure |
|---|
Score = 58.1 bits (141), Expect = 4e-10
Identities = 26/115 (22%), Positives = 50/115 (43%), Gaps = 7/115 (6%)
Query: 538 LTVALVEGVNLASSEMTGLSDPYVVFTC---NGKTRTSSVQLQTCDPQWHDILEFDAM-- 592
LTV +++ L + + +G SDP+V + V+ + +P W++ F+
Sbjct: 28 LTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPY 87
Query: 593 EEPPS-VLDVEVFDFDGPFDQATSLGHAEINFLKHTSTELADMWVSLEGKLAQSA 646
E+ +L ++V D+D F + +G I K T++ W L+ S
Sbjct: 88 EKVVQRILYLQVLDYD-RFSRNDPIGEVSIPLNKVDLTQMQTFWKDLKPSGPSSG 141
|
| >1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 141 | Back alignment and structure |
|---|
Score = 76.6 bits (189), Expect = 1e-16
Identities = 24/124 (19%), Positives = 55/124 (44%), Gaps = 21/124 (16%)
Query: 5 RLYVYVLQGQDLLAKDS------YVKVQI-----GKHKSKSRILKNNSNPVWNEEFVFRV 53
+L V +L +DL +++ YVK+ K+K +++ +K P WN+ F++
Sbjct: 22 QLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSP 81
Query: 54 ---HNIDDEELVVSVFQHNDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETP 110
+ L ++++ D + + E +G + + + + +D P W+ L+T
Sbjct: 82 VHRREFRERMLEITLW---DQARVREEESEFLGEILIELETALLDD----EPHWYKLQTH 134
Query: 111 KTRK 114
+
Sbjct: 135 DSGP 138
|
| >1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 141 | Back alignment and structure |
|---|
Score = 54.2 bits (131), Expect = 8e-09
Identities = 20/113 (17%), Positives = 45/113 (39%), Gaps = 10/113 (8%)
Query: 538 LTVALVEGVNLASSEMTGLSDPYV-VF----TCNGKTRTSSVQLQTCDPQWHDILEFDAM 592
L V ++ +L S E +PYV ++ + R + +T +P+W+ + +
Sbjct: 23 LIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPV 82
Query: 593 EE---PPSVLDVEVFDFDGPFDQATS-LGHAEINFLKHTSTELADMWVSLEGK 641
+L++ ++D ++ + LG I L+ + W L+
Sbjct: 83 HRREFRERMLEITLWDQARVREEESEFLGEILIE-LETALLDDEPHWYKLQTH 134
|
| >1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2 Length = 142 | Back alignment and structure |
|---|
Score = 76.3 bits (188), Expect = 2e-16
Identities = 28/129 (21%), Positives = 64/129 (49%), Gaps = 31/129 (24%)
Query: 5 RLYVYVLQGQDLLAKDS------YVKVQI--------------GKHKSKSRILKNNSNPV 44
L +++LQ ++L+ +D+ +VKV + ++K +++ ++ + NP
Sbjct: 19 NLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPE 78
Query: 45 WNEEFVFRVHNIDD---EELVVSVFQHNDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLP 101
WN+ +++ +++ + L V+V+ D F S+ + +G V + +SS + DN
Sbjct: 79 WNQTVIYKSISMEQLMKKTLEVTVW----DYDRFSSN-DFLGEVLIDLSSTSHLDNT--- 130
Query: 102 PTWFSLETP 110
P W+ L+
Sbjct: 131 PRWYPLKEQ 139
|
| >1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2 Length = 142 | Back alignment and structure |
|---|
Score = 54.3 bits (131), Expect = 7e-09
Identities = 22/121 (18%), Positives = 46/121 (38%), Gaps = 18/121 (14%)
Query: 538 LTVALVEGVNLASSEMTGLSDPYVVF--------------TCNGKTRTSSVQLQTCDPQW 583
L + +++ NL + G SDP+V R + ++ +P+W
Sbjct: 20 LIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEW 79
Query: 584 HDILEFDAMEEP---PSVLDVEVFDFDGPFDQATSLGHAEINFLKHTSTELADMWVSLEG 640
+ + + ++ L+V V+D+D F LG I+ + + W L+
Sbjct: 80 NQTVIYKSISMEQLMKKTLEVTVWDYD-RFSSNDFLGEVLIDLSSTSHLDNTPRWYPLKE 138
Query: 641 K 641
+
Sbjct: 139 Q 139
|
| >2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2 Length = 129 | Back alignment and structure |
|---|
Score = 75.4 bits (186), Expect = 2e-16
Identities = 23/118 (19%), Positives = 54/118 (45%), Gaps = 21/118 (17%)
Query: 5 RLYVYVLQGQDLLAKDS------YVKVQI-----GKHKSKSRILKNNSNPVWNEEFVFRV 53
+L V +L +DL +++ YVK+ K+K +++ +K P WN+ F++
Sbjct: 19 QLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSP 78
Query: 54 HNIDD---EELVVSVFQHNDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLE 108
+ + L ++++ D + + E +G + + + + +D P W+ L+
Sbjct: 79 VHRREFRERMLEITLW---DQARVREEESEFLGEILIELETALLDD----EPHWYKLQ 129
|
| >2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2 Length = 129 | Back alignment and structure |
|---|
Score = 55.0 bits (133), Expect = 4e-09
Identities = 22/112 (19%), Positives = 46/112 (41%), Gaps = 12/112 (10%)
Query: 538 LTVALVEGVNLASSEMTGLSDPYV-VF-----TCNGKTRTSSVQLQTCDPQWHDILEFDA 591
L V ++ +L S E +PYV ++ + K RT +T +P+W+ +
Sbjct: 20 LIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRT-KTVKKTLEPKWNQTFIYSP 78
Query: 592 MEE---PPSVLDVEVFDFDG-PFDQATSLGHAEINFLKHTSTELADMWVSLE 639
+ +L++ ++D +++ LG I L+ + W L+
Sbjct: 79 VHRREFRERMLEITLWDQARVREEESEFLGEILIE-LETALLDDEPHWYKLQ 129
|
| >3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus} Length = 138 | Back alignment and structure |
|---|
Score = 75.0 bits (185), Expect = 4e-16
Identities = 24/107 (22%), Positives = 48/107 (44%), Gaps = 18/107 (16%)
Query: 5 RLYVYVLQGQDLLAKDS------YVKVQI-----GKHKSKSRILKNNSNPVWNEEFVFRV 53
+ V +++ ++L A D YVKV + K K+ K N NP++NE F F +
Sbjct: 17 SIIVNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKKRNLNPIFNESFAFDI 76
Query: 54 --HNIDDEELVVSVFQHNDDSGLFGSSGELMGRVRVPVSSIAAEDNH 98
+ + ++++V + S +++G++ + S E H
Sbjct: 77 PTEKLRETTIIITVMDKD-----KLSRNDVIGKIYLSWKSGPGEVKH 118
|
| >3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus} Length = 138 | Back alignment and structure |
|---|
Score = 50.4 bits (121), Expect = 2e-07
Identities = 19/91 (20%), Positives = 39/91 (42%), Gaps = 8/91 (8%)
Query: 538 LTVALVEGVNLASSEMTGLSDPYV-VFTCNGKTRTS----SVQLQTCDPQWHDILEFD-A 591
+ V +++ NL + ++ G SDPYV V+ R + + +P +++ FD
Sbjct: 18 IIVNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKKRNLNPIFNESFAFDIP 77
Query: 592 MEEPPSV-LDVEVFDFDGPFDQATSLGHAEI 621
E+ + + V D D + +G +
Sbjct: 78 TEKLRETTIIITVMDKDK-LSRNDVIGKIYL 107
|
| >1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A Length = 296 | Back alignment and structure |
|---|
Score = 78.7 bits (194), Expect = 6e-16
Identities = 36/144 (25%), Positives = 62/144 (43%), Gaps = 20/144 (13%)
Query: 5 RLYVYVLQGQDLLAKDS------YVKVQI---GKHKSKSRILKNNSNPVWNEEFVFRVHN 55
+L V +LQ DL AKDS YVK+ + K K ++++ + NP++NE F F V
Sbjct: 21 QLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPL 80
Query: 56 IDDEE--LVVSVFQHNDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTR 113
+ + L SV+ + S +L+G+V + AE P W + +
Sbjct: 81 AELAQRKLHFSVYDFD-----RFSRHDLIGQVVLDNLLELAEQPPDR-PLWRDILEGGSE 134
Query: 114 KFTNKDCGKILLTISLNGKGHNLS 137
D G++ ++ L+
Sbjct: 135 ---KADLGELNFSLCYLPTAGLLT 155
|
| >1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A Length = 296 | Back alignment and structure |
|---|
Score = 74.1 bits (182), Expect = 2e-14
Identities = 26/104 (25%), Positives = 44/104 (42%), Gaps = 18/104 (17%)
Query: 5 RLYVYVLQGQDLLAK------DSYVKVQIG-----KHKSKSRILKNNSNPVWNEEFVFRV 53
L V +++ +L A D YVK + K K+ I KN NP +NE VF V
Sbjct: 153 LLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDV 212
Query: 54 --HNIDDEELVVSVFQHNDDSGLFGSSGELMGRVRVPVSSIAAE 95
++++ L ++V ++ E++G RV +
Sbjct: 213 APESVENVGLSIAVVDYD-----CIGHNEVIGVCRVGPEAADPH 251
|
| >1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A Length = 296 | Back alignment and structure |
|---|
Score = 57.2 bits (138), Expect = 8e-09
Identities = 24/107 (22%), Positives = 49/107 (45%), Gaps = 6/107 (5%)
Query: 538 LTVALVEGVNLASSEMTGLSDPYV---VFTCNGKTRTSSVQLQTCDPQWHDILEFD-AME 593
L V +++ ++L + + G SDPYV + K + V +T +P +++ +F +
Sbjct: 22 LVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLA 81
Query: 594 EPPS-VLDVEVFDFDGPFDQATSLGHAEINFLKHTSTELADMWVSLE 639
E L V+DFD F + +G ++ L + + D + +
Sbjct: 82 ELAQRKLHFSVYDFD-RFSRHDLIGQVVLDNLLELAEQPPDRPLWRD 127
|
| >1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A Length = 296 | Back alignment and structure |
|---|
Score = 52.5 bits (126), Expect = 3e-07
Identities = 27/118 (22%), Positives = 51/118 (43%), Gaps = 9/118 (7%)
Query: 528 GVKAQGDGWVLTVALVEGVNLASSEMTGLSDPYVVFT--CNGK---TRTSSVQLQTCDPQ 582
+ +LTV +++ NL + ++TG SDPYV + G+ R +S++ T +P
Sbjct: 144 SLCYLPTAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPT 203
Query: 583 WHDILEFDAMEEPPS--VLDVEVFDFDGPFDQATSLGHAEINFLKHTSTELADMWVSL 638
+++ L FD E L + V D+D +G + + + W +
Sbjct: 204 YNEALVFDVAPESVENVGLSIAVVDYDC-IGHNEVIGVCRVG-PEAADPHGREHWAEM 259
|
| >2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 Length = 284 | Back alignment and structure |
|---|
Score = 78.3 bits (193), Expect = 6e-16
Identities = 35/129 (27%), Positives = 56/129 (43%), Gaps = 27/129 (20%)
Query: 5 RLYVYVLQGQDLLAKDS------YVKVQIG-----KHKSKSRILKNNSNPVWNEEFVFRV 53
+L V +L+ ++L D YVK+ + K K+ I KN NP +NE F F V
Sbjct: 151 KLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEV 210
Query: 54 --HNIDDEELVVSVFQHNDDSGLFGSSGELMGRVRVPVSSIAAEDNH---MLP------P 102
I ++VV+V ++ + +G+V V +S AE H ML
Sbjct: 211 PFEQIQKVQVVVTVLDYD-----KIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIA 265
Query: 103 TWFSLETPK 111
W +L+ +
Sbjct: 266 QWHTLQVEE 274
|
| >2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 Length = 284 | Back alignment and structure |
|---|
Score = 76.4 bits (188), Expect = 3e-15
Identities = 32/144 (22%), Positives = 64/144 (44%), Gaps = 21/144 (14%)
Query: 5 RLYVYVLQGQDLLAKDS------YVKVQI---GKHKSKSRILKNNSNPVWNEEFVFRV-- 53
+L V ++Q +L A D YVKV + K K ++++ + NPV+NE+F F+V
Sbjct: 20 QLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPY 79
Query: 54 HNIDDEELVVSVFQHNDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTR 113
+ + LV++V+ + S +++G +VP++++ T +
Sbjct: 80 SELAGKTLVMAVYDFDR-----FSKHDIIGEFKVPMNTVDFGH-----VTEEWRDLQSAE 129
Query: 114 KFTNKDCGKILLTISLNGKGHNLS 137
K + G I ++ L+
Sbjct: 130 KEEQEKLGDICFSLRYVPTAGKLT 153
|
| >2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 Length = 284 | Back alignment and structure |
|---|
Score = 61.0 bits (148), Expect = 4e-10
Identities = 26/127 (20%), Positives = 49/127 (38%), Gaps = 6/127 (4%)
Query: 538 LTVALVEGVNLASSEMTGLSDPYVVFT---CNGKTRTSSVQLQTCDPQWHDILEFD-AME 593
L V +++ L + +M G SDPYV K + V +T +P +++ F
Sbjct: 21 LLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYS 80
Query: 594 EPPS-VLDVEVFDFDGPFDQATSLGHAEINFLKHTSTELADMWVSLEGKLAQSAQSKVHL 652
E L + V+DFD F + +G ++ + + W L+ + + +
Sbjct: 81 ELAGKTLVMAVYDFD-RFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQSAEKEEQEKLGDI 139
Query: 653 RIFLENN 659
L
Sbjct: 140 CFSLRYV 146
|
| >2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 Length = 284 | Back alignment and structure |
|---|
Score = 51.7 bits (124), Expect = 4e-07
Identities = 31/161 (19%), Positives = 58/161 (36%), Gaps = 19/161 (11%)
Query: 478 KRQGLEFYGLDLPDSFGELISCGILVIQLEQVFNMVGHFVRARLRKGSDHGVKAQGDGWV 537
+ L D D F + G + + V L+ + GD
Sbjct: 83 AGKTLVMAVYDF-DRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQSAEKEEQEKLGDICF 141
Query: 538 ----------LTVALVEGVNLASSEMTGLSDPYVVFTC-----NGKTRTSSVQLQTCDPQ 582
LTV ++E NL ++ GLSDPYV K + ++++ T +P
Sbjct: 142 SLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPY 201
Query: 583 WHDILEFD--AMEEPPSVLDVEVFDFDGPFDQATSLGHAEI 621
+++ F+ + + V V D+D + ++G +
Sbjct: 202 YNESFSFEVPFEQIQKVQVVVTVLDYDK-IGKNDAIGKVFV 241
|
| >2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A Length = 166 | Back alignment and structure |
|---|
Score = 75.1 bits (185), Expect = 9e-16
Identities = 29/123 (23%), Positives = 56/123 (45%), Gaps = 23/123 (18%)
Query: 5 RLYVYVLQGQDLLAKDS------YVKVQIG-----KHKSKSRILKNNSNPVWNEEFVFRV 53
L V +++ L A D+ +VK+ + K K K++I K NP +NEEF + +
Sbjct: 38 GLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDI 97
Query: 54 --HNIDDEELVVSVFQHNDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPK 111
++ + L +SV+ ++ G S + +G ++ +S+ H W+ K
Sbjct: 98 KHSDLAKKSLDISVWDYD-----IGKSNDYIGGCQLGISAKGERLKH-----WYECLKNK 147
Query: 112 TRK 114
+K
Sbjct: 148 DKK 150
|
| >2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A Length = 166 | Back alignment and structure |
|---|
Score = 50.8 bits (122), Expect = 2e-07
Identities = 21/117 (17%), Positives = 53/117 (45%), Gaps = 12/117 (10%)
Query: 538 LTVALVEGVNLASSEMTGLSDPYV-VFTCNGKTRTS----SVQLQTCDPQWHDILEFD-A 591
L V ++ V+LA+ + G SDP+V ++ + + ++ +T +P++++ +D
Sbjct: 39 LIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIK 98
Query: 592 MEEPPSV-LDVEVFDFDGPFDQATSLGHAEINFLKHTSTELA---DMWVSLEGKLAQ 644
+ LD+ V+D+D +G ++ + L + + + K+ +
Sbjct: 99 HSDLAKKSLDISVWDYD-IGKSNDYIGGCQLG-ISAKGERLKHWYECLKNKDKKIER 153
|
| >1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A Length = 153 | Back alignment and structure |
|---|
Score = 74.3 bits (183), Expect = 1e-15
Identities = 27/107 (25%), Positives = 46/107 (42%), Gaps = 18/107 (16%)
Query: 5 RLYVYVLQGQDLLAKDS------YVKVQI-----GKHKSKSRILKNNSNPVWNEEFVFRV 53
L V VL+ + L D YVKV + K K+ + K N V+NE FVF +
Sbjct: 31 TLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDI 90
Query: 54 --HNIDDEELVVSVFQHNDDSGLFGSSGELMGRVRVPVSSIAAEDNH 98
++++ + V GS E++GR+ + ++ + H
Sbjct: 91 PCESLEEISVEFLVLDSE-----RGSRNEVIGRLVLGATAEGSGGGH 132
|
| >1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A Length = 153 | Back alignment and structure |
|---|
Score = 49.7 bits (119), Expect = 4e-07
Identities = 23/78 (29%), Positives = 41/78 (52%), Gaps = 7/78 (8%)
Query: 538 LTVALVEGVNLASSEMTGLSDPYV-VFTCNGKTRTS----SVQLQTCDPQWHDILEFD-A 591
LTV +++ +L S+++GLSDPYV V + K R S V+ T + ++++ FD
Sbjct: 32 LTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDIP 91
Query: 592 MEEPPSV-LDVEVFDFDG 608
E + ++ V D +
Sbjct: 92 CESLEEISVEFLVLDSER 109
|
| >2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 147 | Back alignment and structure |
|---|
Score = 74.0 bits (182), Expect = 1e-15
Identities = 24/126 (19%), Positives = 47/126 (37%), Gaps = 26/126 (20%)
Query: 5 RLYVYVLQGQDLLAK-------------DSYVKVQI---GKHKSKSRILKNNSNPVWNEE 48
L V V++ +DL + YVK+ + K+ ++ + + PV+ E
Sbjct: 27 HLTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICLLPDQKNSKQTGVKRKTQKPVFEER 86
Query: 49 FVFRVH--NIDDEELVVSVFQHNDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFS 106
+ F + L+++V D F ++G+V VP+ + D W +
Sbjct: 87 YTFEIPFLEAQRRTLLLTVV----DFDKFSRH-CVIGKVSVPLCEV---DLVKGGHWWKA 138
Query: 107 LETPKT 112
L
Sbjct: 139 LIPSGP 144
|
| >2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 147 | Back alignment and structure |
|---|
Score = 48.2 bits (115), Expect = 1e-06
Identities = 25/121 (20%), Positives = 47/121 (38%), Gaps = 13/121 (10%)
Query: 538 LTVALVEGVNLA-------SSEMTGLSDPYV---VFTCNGKTRTSSVQLQTCDPQWHDIL 587
LTV ++E +L S + S+PYV + ++ + V+ +T P + +
Sbjct: 28 LTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICLLPDQKNSKQTGVKRKTQKPVFEERY 87
Query: 588 EFD--AMEEPPSVLDVEVFDFDGPFDQATSLGHAEINFLKHTSTELADMWVSLEGKLAQS 645
F+ +E L + V DFD F + +G + + + W +L S
Sbjct: 88 TFEIPFLEAQRRTLLLTVVDFD-KFSRHCVIGKVSVPLCEVDLVKGGHWWKALIPSGPSS 146
Query: 646 A 646
Sbjct: 147 G 147
|
| >2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A Length = 142 | Back alignment and structure |
|---|
Score = 73.6 bits (181), Expect = 2e-15
Identities = 28/118 (23%), Positives = 48/118 (40%), Gaps = 22/118 (18%)
Query: 5 RLYVYVLQGQDLLAKDS------YVKVQI-----GKHKSKSRILKNNSNPVWNEEFVFRV 53
L +++ + L DS YVK+ + +K +++ L+N NPVWNE +
Sbjct: 30 NLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQYHG 89
Query: 54 ---HNIDDEELVVSVFQHNDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLE 108
++ + L +SV D FG + E +G R + + A LE
Sbjct: 90 ITEEDMQRKTLRISVC----DEDKFGHN-EFIGETRFSLKKLKANQRKNF---NICLE 139
|
| >2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A Length = 142 | Back alignment and structure |
|---|
Score = 60.5 bits (147), Expect = 5e-11
Identities = 22/110 (20%), Positives = 40/110 (36%), Gaps = 9/110 (8%)
Query: 538 LTVALVEGVNLASSEMTGLSDPYVVF-----TCNGKTRTSSVQLQTCDPQWHDILEFDAM 592
L ++ L + GL+DPYV + T +P W++ L++ +
Sbjct: 31 LQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQYHGI 90
Query: 593 EE---PPSVLDVEVFDFDGPFDQATSLGHAEINFLKHTSTELADMWVSLE 639
E L + V D D F +G + K + + + + LE
Sbjct: 91 TEEDMQRKTLRISVCDED-KFGHNEFIGETRFSLKKLKANQRKNFNICLE 139
|
| >1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A* Length = 159 | Back alignment and structure |
|---|
Score = 74.0 bits (182), Expect = 2e-15
Identities = 35/129 (27%), Positives = 58/129 (44%), Gaps = 27/129 (20%)
Query: 5 RLYVYVLQGQDLLAKDS------YVKVQIGKH-----KSKSRILKNNSNPVWNEEFVFRV 53
+L V +L+ ++L D YVK+ + ++ K K+ I KN NP +NE F F V
Sbjct: 26 KLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEV 85
Query: 54 --HNIDDEELVVSVFQHNDDSGLFGSSGELMGRVRVPVSSIAAEDNH---MLP------P 102
I ++VV+V ++ + +G+V V +S AE H ML
Sbjct: 86 PFEQIQKVQVVVTVLDYDK-----IGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIA 140
Query: 103 TWFSLETPK 111
W +L+ +
Sbjct: 141 QWHTLQVEE 149
|
| >1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A* Length = 159 | Back alignment and structure |
|---|
Score = 49.3 bits (118), Expect = 7e-07
Identities = 24/91 (26%), Positives = 44/91 (48%), Gaps = 8/91 (8%)
Query: 538 LTVALVEGVNLASSEMTGLSDPYV-VFTCNGKTRTS----SVQLQTCDPQWHDILEFD-A 591
LTV ++E NL ++ GLSDPYV + R +++ T +P +++ F+
Sbjct: 27 LTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVP 86
Query: 592 MEEPPSV-LDVEVFDFDGPFDQATSLGHAEI 621
E+ V + V V D+D + ++G +
Sbjct: 87 FEQIQKVQVVVTVLDYDK-IGKNDAIGKVFV 116
|
| >1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138 | Back alignment and structure |
|---|
Score = 73.1 bits (180), Expect = 2e-15
Identities = 28/124 (22%), Positives = 51/124 (41%), Gaps = 25/124 (20%)
Query: 5 RLYVYVLQGQDLLAKDS-------YVKVQI---GKHKSKSRILKNNSNPVWNEEFVFRVH 54
V + + + L A D Y+K+ I KHK K+R+L+ +P ++E F F +
Sbjct: 23 AFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTF--Y 80
Query: 55 NIDDEE-----LVVSVFQHNDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSL-E 108
I + L ++ F +++G V +P+S I + ML +
Sbjct: 81 GIPYTQIQELALHFTIL----SFDRFSRD-DIIGEVLIPLSGIELSEGKML--MNREIIS 133
Query: 109 TPKT 112
P +
Sbjct: 134 GPSS 137
|
| >1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138 | Back alignment and structure |
|---|
Score = 47.0 bits (112), Expect = 2e-06
Identities = 15/77 (19%), Positives = 27/77 (35%), Gaps = 7/77 (9%)
Query: 538 LTVALVEGVNLASSEMTGL-SDPYV---VFTCNGKTRTSSVQLQTCDPQWHDILEFDAME 593
V + E L + + + SDPY+ + + V +T DP + + F +
Sbjct: 24 FVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYGIP 83
Query: 594 E---PPSVLDVEVFDFD 607
L + FD
Sbjct: 84 YTQIQELALHFTILSFD 100
|
| >1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138 | Back alignment and structure |
|---|
Score = 73.2 bits (180), Expect = 2e-15
Identities = 18/117 (15%), Positives = 39/117 (33%), Gaps = 17/117 (14%)
Query: 5 RLYVYVLQGQDLLAK---DSYVKVQI----GKHKSKSRILKNNSNPVWNEEFVFRVH--N 55
L+V L+ D YV+ + G ++++ + K + W E V +
Sbjct: 27 ELFVTRLEAVTSNHDGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPLAEEE 86
Query: 56 IDDEELVVSVFQHNDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKT 112
+ L +++ F + G +R+ + + W L+T
Sbjct: 87 LPTATLTLTLR----TCDRFSRH-SVAGELRLGLDGTSVPLG---AAQWGELKTSGP 135
|
| >1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138 | Back alignment and structure |
|---|
Score = 49.7 bits (119), Expect = 3e-07
Identities = 24/115 (20%), Positives = 39/115 (33%), Gaps = 10/115 (8%)
Query: 538 LTVALVEGVNLASSEMTGLSDPYV---VFTCNGKT-RTSSVQLQTCDPQWHDILEFD-AM 592
L V +E V G D YV V G ++++ + W + L A
Sbjct: 28 LFVTRLEAVTSNHD---GGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPLAE 84
Query: 593 EEPPS-VLDVEVFDFDGPFDQATSLGHAEINFLKHTSTELADMWVSLEGKLAQSA 646
EE P+ L + + D F + + G + + A W L+ S
Sbjct: 85 EELPTATLTLTLRTCD-RFSRHSVAGELRLGLDGTSVPLGAAQWGELKTSGPSSG 138
|
| >2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 142 | Back alignment and structure |
|---|
Score = 72.8 bits (179), Expect = 3e-15
Identities = 26/116 (22%), Positives = 47/116 (40%), Gaps = 18/116 (15%)
Query: 5 RLYVYVLQGQDLLAKDS-----YVKVQI-----GKHKSKSRILKNNSNPVWNEEFVFRVH 54
+L V V ++L+A YV++ + + K+ + K NPV+++ F F V
Sbjct: 25 KLIVVVHACRNLIAFSEDGSDPYVRMYLLPDKRRSGRRKTHVSKKTLNPVFDQSFDFSVS 84
Query: 55 --NIDDEELVVSVFQHNDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLE 108
+ L V+V + G L+G+V V ++S W+ L
Sbjct: 85 LPEVQRRTLDVAVK---NSGGFLSKDKGLLGKVLVALASEELAKGW---TQWYDLT 134
|
| >2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 142 | Back alignment and structure |
|---|
Score = 50.8 bits (122), Expect = 1e-07
Identities = 26/111 (23%), Positives = 40/111 (36%), Gaps = 11/111 (9%)
Query: 538 LTVALVEGVNLASSEMTGLSDPYV-VF-----TCNGKTRTSSVQLQTCDPQWHDILEFD- 590
L V + NL + G SDPYV ++ +G+ +T V +T +P + +F
Sbjct: 26 LIVVVHACRNLIAFSEDG-SDPYVRMYLLPDKRRSGRRKTH-VSKKTLNPVFDQSFDFSV 83
Query: 591 -AMEEPPSVLDVEVFDFDGPF-DQATSLGHAEINFLKHTSTELADMWVSLE 639
E LDV V + G LG + + W L
Sbjct: 84 SLPEVQRRTLDVAVKNSGGFLSKDKGLLGKVLVALASEELAKGWTQWYDLT 134
|
| >3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens} Length = 148 | Back alignment and structure |
|---|
Score = 72.0 bits (177), Expect = 7e-15
Identities = 23/120 (19%), Positives = 42/120 (35%), Gaps = 22/120 (18%)
Query: 5 RLYVYVLQGQDLLAKDS-------YVKVQI-----GKHKSKSRILKNNSNPVWNEEFVFR 52
L V+V + L D YVK + + K K+ I ++ NP+++E +
Sbjct: 24 SLVVHVKECHQLAYADEAKKRSNPYVKTYLLPDKSRQGKRKTSIKRDTVNPLYDETLRYE 83
Query: 53 VH--NIDDEELVVSVFQHNDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETP 110
+ + L SV+ G FG + +G + + S + L
Sbjct: 84 IPESLLAQRTLQFSVW----HHGRFGRN-TFLGEAEIQMDSWKLDKKL---DHCLPLHGK 135
|
| >3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens} Length = 148 | Back alignment and structure |
|---|
Score = 57.4 bits (139), Expect = 9e-10
Identities = 31/125 (24%), Positives = 51/125 (40%), Gaps = 11/125 (8%)
Query: 538 LTVALVEGVNLAS-SEMTGLSDPYV-VF-----TCNGKTRTSSVQLQTCDPQWHDILEFD 590
L V + E LA E S+PYV + + GK +T S++ T +P + + L ++
Sbjct: 25 LVVHVKECHQLAYADEAKKRSNPYVKTYLLPDKSRQGKRKT-SIKRDTVNPLYDETLRYE 83
Query: 591 --AMEEPPSVLDVEVFDFDGPFDQATSLGHAEINFLKHTSTELADMWVSLEGKLAQSAQS 648
L V+ F + T LG AEI + D + L GK++ ++
Sbjct: 84 IPESLLAQRTLQFSVWHHG-RFGRNTFLGEAEIQMDSWKLDKKLDHCLPLHGKISAESEG 142
Query: 649 KVHLR 653
H
Sbjct: 143 HHHHH 147
|
| >2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus} Length = 171 | Back alignment and structure |
|---|
Score = 71.0 bits (174), Expect = 2e-14
Identities = 24/118 (20%), Positives = 43/118 (36%), Gaps = 20/118 (16%)
Query: 5 RLYVYVLQGQDLLAKDS-------YVKVQI-----GKHKSKSRILKNNSNPVWNEEFVFR 52
+L V V++ + L K YVKV + K K+RI + +P++ + VF
Sbjct: 31 QLEVEVIRARSLTQKPGSKSTPAPYVKVYLLENGACIAKKKTRIARKTLDPLYQQSLVFD 90
Query: 53 VHNIDDEELVVSVFQHNDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETP 110
+ + L V V+ MG ++ + + W+ L P
Sbjct: 91 E-SPQGKVLQVIVWGDYG----RMDHKCFMGVAQILLEELDLSSMV---IGWYKLFPP 140
|
| >2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus} Length = 171 | Back alignment and structure |
|---|
Score = 47.9 bits (114), Expect = 2e-06
Identities = 28/113 (24%), Positives = 43/113 (38%), Gaps = 13/113 (11%)
Query: 538 LTVALVEGVNLASSEMT-GLSDPYVVF------TCNGKTRTSSVQLQTCDPQWHDILEFD 590
L V ++ +L + PYV C K +T + +T DP + L FD
Sbjct: 32 LEVEVIRARSLTQKPGSKSTPAPYVKVYLLENGACIAKKKTR-IARKTLDPLYQQSLVFD 90
Query: 591 AMEEPPS-VLDVEVF-DFDGPFDQATSLGHAEINFLKHTSTELADMWVSLEGK 641
E P VL V V+ D+ D +G A+I + + + W L
Sbjct: 91 --ESPQGKVLQVIVWGDYG-RMDHKCFMGVAQILLEELDLSSMVIGWYKLFPP 140
|
| >2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus} Length = 134 | Back alignment and structure |
|---|
Score = 69.6 bits (171), Expect = 3e-14
Identities = 25/123 (20%), Positives = 50/123 (40%), Gaps = 22/123 (17%)
Query: 3 STRLYVYVLQGQDLLAKDS-----YVKVQI-----GKHKSKSRILKNNSNPVWNEEFVFR 52
+ L++ V+ +DL+ +D YVK + K K++I + NP +NE V+
Sbjct: 19 NGTLFIMVMHIKDLVTEDGADPNPYVKTYLLPDTHKTSKRKTKISRKTRNPTFNEMLVYS 78
Query: 53 VHNIDDEE---LVVSVFQHNDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLET 109
++ + L +SV + + +G + +P+ + W+ L T
Sbjct: 79 GYSKETLRQRELQLSVL----SAESLREN-FFLGGITLPLKDF---NLSKETVKWYQL-T 129
Query: 110 PKT 112
T
Sbjct: 130 AAT 132
|
| >2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus} Length = 134 | Back alignment and structure |
|---|
Score = 49.2 bits (118), Expect = 4e-07
Identities = 17/113 (15%), Positives = 39/113 (34%), Gaps = 12/113 (10%)
Query: 538 LTVALVEGVNLASSEMTGLSDPYVVF------TCNGKTRTSSVQLQTCDPQWHDILEFDA 591
L + ++ +L + + +PYV K +T + +T +P ++++L +
Sbjct: 22 LFIMVMHIKDLVTED-GADPNPYVKTYLLPDTHKTSKRKTK-ISRKTRNPTFNEMLVYSG 79
Query: 592 M--EEPPS-VLDVEVFDFDGPFDQATSLGHAEINFLKHTSTELADMWVSLEGK 641
E L + V + + LG + ++ W L
Sbjct: 80 YSKETLRQRELQLSVLSAES-LRENFFLGGITLPLKDFNLSKETVKWYQLTAA 131
|
| >2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens} Length = 155 | Back alignment and structure |
|---|
Score = 65.9 bits (161), Expect = 9e-13
Identities = 17/117 (14%), Positives = 41/117 (35%), Gaps = 21/117 (17%)
Query: 5 RLYVYVLQGQDLLAKDS------YVKVQI------GKHKSKSRILKNNSNPVWNEEFVFR 52
+ + ++Q +L A ++V + ++R L + V+NE F
Sbjct: 44 QFAILIIQLSNLSALLQQQDQKVNIRVAVLPCSESTTCLFRTRPLDASDTLVFNEVFWVS 103
Query: 53 VH--NIDDEELVVSVFQHNDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSL 107
+ + + L V V + E +G ++ ++ + W++L
Sbjct: 104 MSYPALHQKTLRVDVCTTDR-----SHLEECLGGAQISLAEVCRSGERS--TRWYNL 153
|
| >2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens} Length = 155 | Back alignment and structure |
|---|
Score = 47.0 bits (112), Expect = 3e-06
Identities = 13/107 (12%), Positives = 31/107 (28%), Gaps = 10/107 (9%)
Query: 538 LTVALVEGVNLASSEMTGLSDPYV------VFTCNGKTRTSSVQLQTCDPQWHDILEFDA 591
+ +++ NL++ + + + ++++
Sbjct: 45 FAILIIQLSNLSALLQQQDQKVNIRVAVLPCSESTTCLFRTRPLDASDTLVFNEVFWVSM 104
Query: 592 MEEPPS--VLDVEVFDFDGPFDQATSLGHAEINFLK-HTSTELADMW 635
L V+V D LG A+I+ + S E + W
Sbjct: 105 SYPALHQKTLRVDVCTTD-RSHLEECLGGAQISLAEVCRSGERSTRW 150
|
| >1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A Length = 749 | Back alignment and structure |
|---|
Score = 71.1 bits (173), Expect = 1e-12
Identities = 25/128 (19%), Positives = 46/128 (35%), Gaps = 18/128 (14%)
Query: 5 RLYVYVLQGQDLLAK---------DSYVKVQIG---KHKSKSRILKNNSNPVWNEEFVFR 52
+ V VL+ + D YV++ I + ++R N+ NPVWNE F F
Sbjct: 19 KFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFI 78
Query: 53 VHNIDDEELVVSVFQHNDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKT 112
+ + L +++ D+ E +G VSS+ + +P + +
Sbjct: 79 LDPNQENVLEITLM----DANYVMD--ETLGTATFTVSSMKVGEKKEVPFIFNQVTEMVL 132
Query: 113 RKFTNKDC 120
Sbjct: 133 EMSLEVCS 140
|
| >1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A Length = 749 | Back alignment and structure |
|---|
Score = 59.2 bits (142), Expect = 6e-09
Identities = 22/117 (18%), Positives = 41/117 (35%), Gaps = 8/117 (6%)
Query: 526 DHGVKAQGDGWVLTVALVEGVNL---ASSEMTGLSDPYVVF---TCNGKTRTSSVQLQTC 579
H + TV ++ + A +M DPYV T + +
Sbjct: 8 QHIIVEHQYSHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDI 67
Query: 580 DPQWHDILEFDAMEEPPSVLDVEVFDFDGPFDQATSLGHAEINFLKHTSTELADMWV 636
+P W++ EF +VL++ + D + D+ +LG A E ++
Sbjct: 68 NPVWNETFEFILDPNQENVLEITLMDANYVMDE--TLGTATFTVSSMKVGEKKEVPF 122
|
| >3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus} Length = 540 | Back alignment and structure |
|---|
Score = 63.8 bits (154), Expect = 1e-10
Identities = 24/109 (22%), Positives = 41/109 (37%), Gaps = 13/109 (11%)
Query: 8 VYVLQGQDLLAKDS-----YVKVQIGKHKSKSRILKNNSNPVWNEEFVFR-VHNIDDEEL 61
V + + L + Y+KV G + ++ ++ NN+NP W ++ F V L
Sbjct: 398 VSNFRAEHLWGDYTTATDAYLKVFFGGQEFRTGVVWNNNNPRWTDKMDFENVLLSTGGPL 457
Query: 62 VVSVFQHNDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLP--PTWFSLE 108
V V+ + +G +L+G S E L FS
Sbjct: 458 RVQVWDAD-----YGWDDDLLGSCDRSPHSGFHEVTCELNHGRVKFSYH 501
|
| >3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus} Length = 540 | Back alignment and structure |
|---|
Score = 53.4 bits (127), Expect = 3e-07
Identities = 26/155 (16%), Positives = 51/155 (32%), Gaps = 4/155 (2%)
Query: 470 HILLCEPSKRQGLEFYGLDLPDSFGELISCGILVIQLEQVF-NMVGHFVRARLRKGSDHG 528
+L + KR+ L S +C + + + +
Sbjct: 327 TLLEEQNPKREALRQAISHYIMSRARWQNCSRPCRSGQHKSSHDSCQCECQDSKVTNQDC 386
Query: 529 VKAQGDGWVLTVALVEGVNLASSEMTGLSDPYVVFTCNGKTRTSSVQLQTCDPQWHDILE 588
Q L V+ +L + T +D Y+ G+ + V +P+W D ++
Sbjct: 387 CPRQRGLAHLVVSNFRAEHLWG-DYTTATDAYLKVFFGGQEFRTGVVWNNNNPRWTDKMD 445
Query: 589 FDAM-EEPPSVLDVEVFDFDGPFDQATSLGHAEIN 622
F+ + L V+V+D D LG + +
Sbjct: 446 FENVLLSTGGPLRVQVWDAD-YGWDDDLLGSCDRS 479
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 63.3 bits (153), Expect = 3e-10
Identities = 101/711 (14%), Positives = 198/711 (27%), Gaps = 214/711 (30%)
Query: 175 DVTEGNHLMKAMVSHLEKIFNKN-------D---QGLKTEDSSELSSTPSDYE------D 218
+ E + K ++S E F N D L E+ + +
Sbjct: 10 ETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFW 69
Query: 219 CVEEHPPS--HNF-EEAIK-----MMQSRENEGDMPENLQGGIL--LDQLYQVSPCDLNT 268
+ F EE ++ +M + E P + + D+LY +
Sbjct: 70 TLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQ----- 124
Query: 269 FLFAPDS--------QFRKDLAELQGTKDVQEGPWEWKSGEMTCLTRAVSYMKAATKLVK 320
+FA + + R+ L EL+ K+V + + + K
Sbjct: 125 -VFAKYNVSRLQPYLKLRQALLELRPAKNV-----------------LIDGVLGSGKTWV 166
Query: 321 AVKATEQQTYLKANGQEFAIL-VTVSTPDVPYGNTFNVQLLYKIIPGPELSSGEDSSHLI 379
A+ +F I + + + P +Q L I P +S D S I
Sbjct: 167 ALDVCLSYKVQCKM--DFKIFWLNLKNCNSPETVLEMLQKLLYQI-DPNWTSRSDHSSNI 223
Query: 380 ISWGIDFHQSTMMRGMIEGGARQGLKESF--EQFAN-LLAQNLKILDSKDASDKDHMLA- 435
+ H + L+ + + N LL +L + + A
Sbjct: 224 K---LRIHS-----------IQAELRRLLKSKPYENCLL-----VLL--NVQNAKAWNAF 262
Query: 436 -----TLQTEQQSDWELASEYFWNFTVVSAGFMILYVVVHILLCEPSKRQGLEFYGL--- 487
L T + +SA + H + + +
Sbjct: 263 NLSCKILLTTRFKQ---------VTDFLSAATTTHISLDHHSMTL-TPDEVKSLLLKYLD 312
Query: 488 ----DLPDSFGELISCGILVIQLEQVFNMVGHFVRARLRKGSDHGVKAQGDGW--VLTVA 541
DLP E+++ + +++ +R G D W V
Sbjct: 313 CRPQDLPR---EVLTTNPRRL------SIIA----ESIRDGLAT-----WDNWKHVNCDK 354
Query: 542 LVEGV-----NLASSEMTGLSDPYVVFTCNGKTRTSSVQLQTCDPQWHDILEFDAMEEPP 596
L + L +E + D VF + + + L W D+++ +
Sbjct: 355 LTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHI-PTIL-LSLI---WFDVIK----SDVM 405
Query: 597 SVLDVEVFDFDGPFDQATSLGHAEINFLKHTSTELADMWVSLEGKLAQSAQSKVHLRIFL 656
V++ SL E + T + + +++ L+ KL +H I
Sbjct: 406 VVVN---------KLHKYSL--VEKQPKESTIS-IPSIYLELKVKLENEYA--LHRSI-- 449
Query: 657 ENNNGVETIKEYLTKMEKEVGKKGRLFLSARIVGFYANLFG---------NKTKFF---F 704
+ Y + +L ++ + G + F F
Sbjct: 450 --------VDHYNIPKTFDSDDLIPPYLD----QYFYSHIGHHLKNIEHPERMTLFRMVF 497
Query: 705 LWEDIEDIQILSPSLATVGSPSLVIILWKGRGLDARHGAKSQDEEGRLRFYFQSFVSFND 764
L D + L + + W G + +L+FY + ++ ND
Sbjct: 498 L-----DFRFLEQKIRHDSTA------WNASG-------SILNTLQQLKFY-KPYICDND 538
Query: 765 ASRTIMA-------------LWRSRTLTAYQKEQIAEEQQVQEEMSTAADR 802
+ L S+ + +AE++ + EE R
Sbjct: 539 PKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQVQR 589
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 59.5 bits (143), Expect = 5e-09
Identities = 81/614 (13%), Positives = 169/614 (27%), Gaps = 188/614 (30%)
Query: 14 QDLLAKD-SYVKVQIGKH-KSKSRILKNNS---NPVWNEEFVFRVHNIDDEELVVSV--- 65
+++L + ++ I + S + + + ++N+ VF +N+ + + +
Sbjct: 84 EEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQA 143
Query: 66 ---FQHNDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTNKDCGK 122
+ + + G G G+ TW +L+ + K K K
Sbjct: 144 LLELRPAKNVLIDGVLG--SGK------------------TWVALDVCLSYKVQCKMDFK 183
Query: 123 IL-LTISLNGKGHNLSSNRLLYLHSNVSSNESKELEDPCVLSHDVSCSKAP--------- 172
I L + N L L + N + + + + +A
Sbjct: 184 IFWLNLK-NCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKP 242
Query: 173 ---CL----DVTEGNHLMKAMVSHLEKIFNKNDQGL-KTEDSS--ELSSTPSDYEDCVEE 222
CL +V FN + + L T + S + ++
Sbjct: 243 YENCLLVLLNVQNAKAW---------NAFNLSCKILLTTRFKQVTDFLSAATTTHISLDH 293
Query: 223 HPPSHNFEEAIKMMQS--RENEGDMPENLQGGILLDQLYQVSPCDLNTFLFAPDSQFRKD 280
H + +E ++ D+P ++ +P L+
Sbjct: 294 HSMTLTPDEVKSLLLKYLDCRPQDLPR---------EVLTTNPRRLSII----------- 333
Query: 281 LAELQGTKDVQEGP--WE-WKSGEMTCLTRAVSYMKAATKLVKAVKATEQQTYLKANGQE 337
AE +++G W+ WK LT + + ++ E +
Sbjct: 334 -AES-----IRDGLATWDNWKHVNCDKLTTIIE------SSLNVLEPAEYRKMFD----R 377
Query: 338 FAILVTVSTPDVPYGNTFNVQLLYKIIPGPELSSGEDSSHLIISWGIDFHQSTMM----- 392
++ P IP LS + W M+
Sbjct: 378 LSVFP----PSAH-------------IPTILLS---------LIWFDVIKSDVMVVVNKL 411
Query: 393 --RGMIEGGARQGLK-------ESFEQFANLLAQNLKILDS---KDASDKDHMLATLQTE 440
++E ++ E + N A + I+D D D ++
Sbjct: 412 HKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIP----- 466
Query: 441 QQSDWELASEYFWNFTVVSAGFMILYVVVHILLCEPSKRQGL--EFYGLDLPDSF--GEL 496
D +YF++ I + H+ E +R L + LD F ++
Sbjct: 467 PYLD-----QYFYSH--------IGH---HLKNIEHPERMTLFRMVF-LDF--RFLEQKI 507
Query: 497 ISCGILVIQLEQVFNMVGHFVRARLRKGSDHGVKAQGDGWVLTVALVE-----GVNLASS 551
+ N + +L+ + L A+++ NL S
Sbjct: 508 RHDSTAWNASGSILNTLQ-----QLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICS 562
Query: 552 EMT-----GLSDPY 560
+ T L
Sbjct: 563 KYTDLLRIALMAED 576
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 54.5 bits (130), Expect = 2e-07
Identities = 83/626 (13%), Positives = 151/626 (24%), Gaps = 229/626 (36%)
Query: 419 LKILDSKDASDK----------DHMLATLQTEQQSDWELASEYFWNFTVVSAGFMILYVV 468
+ D KD D DH++ + + FW
Sbjct: 30 VDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLR-----LFW--------------- 69
Query: 469 VHILLCEPSKRQGLEFYGLDLPDSFGELIS------------CGILVIQLEQVFNMV--- 513
L + +F L ++ L+S + + Q ++++N
Sbjct: 70 ---TLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVF 126
Query: 514 --GHFVRAR-----------LRKGSD---HGVKAQGDG-WVLTVALVEGVNLASSEMTGL 556
+ R + LR + GV G G + V S
Sbjct: 127 AKYNVSRLQPYLKLRQALLELRPAKNVLIDGVL--GSGKTWV-ALDV-----CLSYKVQC 178
Query: 557 SDPYVVF-----TCNGKTRTSSVQLQT-C---DPQWHDILEFDAMEEPPSVLDVEVFDFD 607
+ +F CN T LQ DP W D +
Sbjct: 179 KMDFKIFWLNLKNCN-SPETVLEMLQKLLYQIDPNWTS--RSDHSSNIKLRIH------- 228
Query: 608 GPFDQATSLGHAEINFLKHTSTE-----LADMWVSLEGKLAQSAQSKVHLRIFLENNNGV 662
S+ LK E L ++ + F N
Sbjct: 229 -------SIQAELRRLLKSKPYENCLLVLLNVQ------------NAKAWNAF---NLSC 266
Query: 663 ETIKEYLTKMEKEV------GKKGRLFLSARIVGFY----ANLFGNKTKFFFLWEDIEDI 712
+ + LT K+V + L + +L +L +D+
Sbjct: 267 KIL---LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLK-----YLDCRPQDL 318
Query: 713 QILSPSLATVGSPSLVIILWKGRGLDARHGAKSQDEEGRLRFYFQSFVSFNDASRTIMAL 772
P +P + I+ +D + V+ + + I +
Sbjct: 319 ----PREVLTTNPRRLSII----------AESIRDGLATWDNWKH--VNCDKLTTIIES- 361
Query: 773 WRSRTLTAYQKEQIAEEQQVQEEMSTAADRGSVPNFEDAKMSKVYNAELPISVKALMEMF 832
+ + AE +++ + +S F +A +P + + +
Sbjct: 362 -------SLNVLEPAEYRKMFDRLSV---------FPP-------SAHIPTIL---LSLI 395
Query: 833 DGGKLEHQVMEKSGCHNYVTTPWDLVKPGVCERHLSYRFNRHVSIFGGEVTCTQQKSPLA 892
W V V K L
Sbjct: 396 ----------------------WFDVIKSDVM----------------VVVNKLHKYSLV 417
Query: 893 SGEGWIVNEVMSLHDVPFDDHFRVHFRYEIEKSPLAH-NACKCAIYIGISWLKSTKFQQR 951
E +S+ + + ++ Y + +S + H N K +
Sbjct: 418 --EKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKT-------FDSDDLIPPY 468
Query: 952 ITQNITEKFTHRLKEMIELVEREILF 977
+ Q H LK IE ER LF
Sbjct: 469 LDQYFYSHIGHHLKN-IEHPERMTLF 493
|
| >3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus} Length = 144 | Back alignment and structure |
|---|
Score = 55.0 bits (132), Expect = 6e-09
Identities = 21/97 (21%), Positives = 43/97 (44%), Gaps = 9/97 (9%)
Query: 5 RLYVYVLQGQDLLAK-DSYVKVQIGKHKSKSRILKNNSNPV-WNEEFVFRVHN--IDDEE 60
L V++ +L + D KV SR+L+N + ++E F + V + +E
Sbjct: 22 ALIVHLKTVSELRGRADRIAKVTFRGQSFYSRVLENCEDVADFDETFRWPVASSIDRNEV 81
Query: 61 LVVSVFQHNDDSGLFGSSGELMGRVRVPVSSIAAEDN 97
L + +F ++ S +L+G R+ + + E+
Sbjct: 82 LEIQIFNYSK-----VFSNKLIGTFRMVLQKVVEENR 113
|
| >3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus} Length = 483 | Back alignment and structure |
|---|
Score = 53.8 bits (128), Expect = 2e-07
Identities = 24/206 (11%), Positives = 57/206 (27%), Gaps = 13/206 (6%)
Query: 2 VSTRLYVYVLQGQDLLAKDS-YVKVQI-GKHKSKSRILK---NNSNPVWNEEFVFRVHNI 56
V L +++++ ++L K Y ++ + +++ + W E F F
Sbjct: 9 VDNVLKLWIIEARELPPKKRYYCELCLDDMLYARTTSKPRSASGDTVFWGEHFEFNNLPA 68
Query: 57 DDEELVVSVFQHNDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFT 116
+ + +G V VPV+++ W+ + P +
Sbjct: 69 VRALRLHLYRDSDKKRK--KDKAGYVGLVTVPVATL---AGRHFTEQWYPVTLPTGSGGS 123
Query: 117 NKDCGKILLTISLNGKGHNLSSNRLLYLHSNVSSNESKELEDPCVLSHDVSCSK---APC 173
G + L + + +E + V+
Sbjct: 124 GGMGSGGGGGSGGGSGGKGKGGCPAVRLKARYQTMSILPMELYKEFAEYVTNHYRMLCAV 183
Query: 174 LDVTEGNHLMKAMVSHLEKIFNKNDQ 199
L+ + + S L I +
Sbjct: 184 LEPALNVKGKEEVASALVHILQSTGK 209
|
| >3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus} Length = 483 | Back alignment and structure |
|---|
Score = 42.7 bits (99), Expect = 5e-04
Identities = 16/131 (12%), Positives = 34/131 (25%), Gaps = 11/131 (8%)
Query: 537 VLTVALVEGVNLASSEMTGLSDPYVVFTCNG----KTRTSSVQLQTCDPQWHDILEFDAM 592
VL + ++E L Y + +T + W + EF+ +
Sbjct: 12 VLKLWIIEARELPPK-----KRYYCELCLDDMLYARTTSKPRSASGDTVFWGEHFEFNNL 66
Query: 593 EEPPSVLDVEVFDFDGP--FDQATSLGHAEINFLKHTSTELADMWVSLEGKLAQSAQSKV 650
++ D D D+A +G + + W + +
Sbjct: 67 PAVRALRLHLYRDSDKKRKKDKAGYVGLVTVPVATLAGRHFTEQWYPVTLPTGSGGSGGM 126
Query: 651 HLRIFLENNNG 661
+ G
Sbjct: 127 GSGGGGGSGGG 137
|
| >2enj_A NPKC-theta, protein kinase C theta type; beta-sandwich, phosphotyrosine binding, TCR, T-cell, diacylglycerol, phorbol ester, structural genomics; NMR {Homo sapiens} Length = 138 | Back alignment and structure |
|---|
Score = 41.2 bits (96), Expect = 3e-04
Identities = 19/109 (17%), Positives = 38/109 (34%), Gaps = 15/109 (13%)
Query: 556 LSDPYVVF----TCNGKTRTSSVQLQ-TCDPQWHDILEFDAMEEPPSVLDVEVFDFDGPF 610
+PY + +Q + T P W FDA V+ + V +
Sbjct: 31 AVNPYCAVLVKEYVESENGQMYIQKKPTMYPPWDS--TFDAHINKGRVMQIIVKGKNVDL 88
Query: 611 DQATSLGHAEINFLKHTSTELADMWVSLE--GKLAQSAQSKVHLRIFLE 657
T++ + + ++W+ L+ G++ ++ R FLE
Sbjct: 89 ISETTVELYSLAERCRKNNGKTEIWLELKPQGRM------LMNARYFLE 131
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 985 | |||
| 2r83_A | 284 | Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel | 99.85 | |
| 1dqv_A | 296 | Synaptotagmin III; beta sandwich, calcium ION, C2 | 99.84 | |
| 2fk9_A | 157 | Protein kinase C, ETA type; ATP-binding, metal-bin | 99.84 | |
| 2dmh_A | 140 | Myoferlin; beta-sandwich, FER-1-like protein 3, mu | 99.83 | |
| 3kwu_A | 148 | MUNC13-1; calcium binding protein, phospholipid bi | 99.82 | |
| 2ep6_A | 133 | MCTP2 protein; beta sandwich, Ca2+ binding, membra | 99.81 | |
| 1gmi_A | 136 | Protein kinase C, epsilon type; PKC, C2 domain, X- | 99.81 | |
| 1wfj_A | 136 | Putative elicitor-responsive gene; C2 domain, rike | 99.81 | |
| 1rlw_A | 126 | Phospholipase A2, CALB domain; hydrolase, C2 domai | 99.79 | |
| 3b7y_A | 153 | E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL- | 99.78 | |
| 3m7f_B | 176 | E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB1 | 99.78 | |
| 3pyc_A | 132 | E3 ubiquitin-protein ligase smurf1; phospholipid b | 99.77 | |
| 2b3r_A | 134 | Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA | 99.76 | |
| 3kwu_A | 148 | MUNC13-1; calcium binding protein, phospholipid bi | 99.76 | |
| 1gmi_A | 136 | Protein kinase C, epsilon type; PKC, C2 domain, X- | 99.75 | |
| 3b7y_A | 153 | E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL- | 99.74 | |
| 2nq3_A | 173 | Itchy homolog E3 ubiquitin protein ligase; C2 doma | 99.74 | |
| 2d8k_A | 141 | Synaptotagmin VII; exocytosis, calcium binding, ly | 99.74 | |
| 3fdw_A | 148 | Synaptotagmin-like protein 4; structural genomics, | 99.74 | |
| 2ep6_A | 133 | MCTP2 protein; beta sandwich, Ca2+ binding, membra | 99.74 | |
| 2z0u_A | 155 | WW domain-containing protein 1; C2 domain, alterna | 99.74 | |
| 1rsy_A | 152 | Synaptotagmin I; calcium/phospholipid binding prot | 99.73 | |
| 3f04_A | 143 | Synaptotagmin-1; C2A, calcium, cell junction, cyto | 99.73 | |
| 2dmh_A | 140 | Myoferlin; beta-sandwich, FER-1-like protein 3, mu | 99.73 | |
| 3m7f_B | 176 | E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB1 | 99.73 | |
| 2fk9_A | 157 | Protein kinase C, ETA type; ATP-binding, metal-bin | 99.73 | |
| 2bwq_A | 129 | Regulating synaptic membrane exocytosis protein 2; | 99.73 | |
| 1rh8_A | 142 | Piccolo protein; beta-sandwich, metal binding prot | 99.72 | |
| 1wfm_A | 138 | Synaptotagmin XIII; C2 domain, exocytosis, neurotr | 99.72 | |
| 1wfj_A | 136 | Putative elicitor-responsive gene; C2 domain, rike | 99.71 | |
| 3rdl_A | 137 | Protein kinase C alpha type; protein kinase PKC, t | 99.71 | |
| 1v27_A | 141 | Regulating synaptic membrane exocytosis protein 2; | 99.71 | |
| 1a25_A | 149 | CALB, protein kinase C (beta); calcium++/phospholi | 99.71 | |
| 2q3x_A | 171 | Regulating synaptic membrane exocytosis protein 1; | 99.71 | |
| 1rlw_A | 126 | Phospholipase A2, CALB domain; hydrolase, C2 domai | 99.71 | |
| 2chd_A | 142 | Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium | 99.71 | |
| 2dmg_A | 142 | KIAA1228 protein; beta-sandwich, structural genomi | 99.7 | |
| 2nq3_A | 173 | Itchy homolog E3 ubiquitin protein ligase; C2 doma | 99.7 | |
| 1ugk_A | 138 | Synaptotagmin IV, KIAA1342; beta sandwich, structu | 99.69 | |
| 3fbk_A | 153 | RGS3, RGP3, regulator of G-protein signaling 3; al | 99.69 | |
| 3pyc_A | 132 | E3 ubiquitin-protein ligase smurf1; phospholipid b | 99.69 | |
| 2enp_A | 147 | B/K protein; C2 type 1,beta sandwich, structural g | 99.69 | |
| 2cm5_A | 166 | Rabphilin-3A; protein transport, zinc-finger, Ca2+ | 99.68 | |
| 1tjx_A | 159 | Similar to synaptotagmini/P65; C2B domain, calcium | 99.67 | |
| 3n5a_A | 138 | Synaptotagmin-7; calcium/phospholipid binding prot | 99.67 | |
| 2r83_A | 284 | Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel | 99.66 | |
| 2b3r_A | 134 | Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA | 99.64 | |
| 1w15_A | 153 | Synaptotagmin IV; metal binding protein, endocytos | 99.64 | |
| 3jzy_A | 510 | Intersectin 2; C2 domain, structural genomics cons | 99.63 | |
| 3l9b_A | 144 | Otoferlin; C2-domain, beta-sheets, cell membrane, | 99.62 | |
| 3nsj_A | 540 | Perforin-1; pore forming protein, immune system; H | 99.61 | |
| 2cjt_A | 131 | UNC-13 homolog A, MUNC13-1; phorbol-ester binding, | 99.61 | |
| 2z0u_A | 155 | WW domain-containing protein 1; C2 domain, alterna | 99.61 | |
| 1dqv_A | 296 | Synaptotagmin III; beta sandwich, calcium ION, C2 | 99.6 | |
| 3f04_A | 143 | Synaptotagmin-1; C2A, calcium, cell junction, cyto | 99.6 | |
| 1wfm_A | 138 | Synaptotagmin XIII; C2 domain, exocytosis, neurotr | 99.6 | |
| 1rsy_A | 152 | Synaptotagmin I; calcium/phospholipid binding prot | 99.59 | |
| 3fdw_A | 148 | Synaptotagmin-like protein 4; structural genomics, | 99.59 | |
| 2bwq_A | 129 | Regulating synaptic membrane exocytosis protein 2; | 99.59 | |
| 3l9b_A | 144 | Otoferlin; C2-domain, beta-sheets, cell membrane, | 99.58 | |
| 1a25_A | 149 | CALB, protein kinase C (beta); calcium++/phospholi | 99.58 | |
| 1rh8_A | 142 | Piccolo protein; beta-sandwich, metal binding prot | 99.58 | |
| 2cjs_A | 167 | UNC-13 homolog A, MUNC13-1; neurotransmitter trans | 99.58 | |
| 3rdl_A | 137 | Protein kinase C alpha type; protein kinase PKC, t | 99.58 | |
| 2cjt_A | 131 | UNC-13 homolog A, MUNC13-1; phorbol-ester binding, | 99.57 | |
| 2d8k_A | 141 | Synaptotagmin VII; exocytosis, calcium binding, ly | 99.57 | |
| 2chd_A | 142 | Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium | 99.55 | |
| 3fbk_A | 153 | RGS3, RGP3, regulator of G-protein signaling 3; al | 99.55 | |
| 1ugk_A | 138 | Synaptotagmin IV, KIAA1342; beta sandwich, structu | 99.55 | |
| 1v27_A | 141 | Regulating synaptic membrane exocytosis protein 2; | 99.55 | |
| 2q3x_A | 171 | Regulating synaptic membrane exocytosis protein 1; | 99.55 | |
| 2enp_A | 147 | B/K protein; C2 type 1,beta sandwich, structural g | 99.54 | |
| 1djx_A | 624 | PLC-D1, phosphoinositide-specific phospholipase C, | 99.53 | |
| 2dmg_A | 142 | KIAA1228 protein; beta-sandwich, structural genomi | 99.53 | |
| 3n5a_A | 138 | Synaptotagmin-7; calcium/phospholipid binding prot | 99.53 | |
| 1tjx_A | 159 | Similar to synaptotagmini/P65; C2B domain, calcium | 99.52 | |
| 2cm5_A | 166 | Rabphilin-3A; protein transport, zinc-finger, Ca2+ | 99.52 | |
| 1w15_A | 153 | Synaptotagmin IV; metal binding protein, endocytos | 99.51 | |
| 1cjy_A | 749 | CPLA2, protein (cytosolic phospholipase A2); lipid | 99.49 | |
| 2cjs_A | 167 | UNC-13 homolog A, MUNC13-1; neurotransmitter trans | 99.47 | |
| 3jzy_A | 510 | Intersectin 2; C2 domain, structural genomics cons | 99.47 | |
| 3nsj_A | 540 | Perforin-1; pore forming protein, immune system; H | 99.39 | |
| 3bxj_A | 483 | RAS GTPase-activating protein syngap; GTPase activ | 99.37 | |
| 1djx_A | 624 | PLC-D1, phosphoinositide-specific phospholipase C, | 99.34 | |
| 1cjy_A | 749 | CPLA2, protein (cytosolic phospholipase A2); lipid | 99.26 | |
| 3pfq_A | 674 | PKC-B, PKC-beta, protein kinase C beta type; phosp | 99.24 | |
| 3bxj_A | 483 | RAS GTPase-activating protein syngap; GTPase activ | 99.24 | |
| 3qr0_A | 816 | Phospholipase C-beta (PLC-beta); PH domain, EF han | 99.14 | |
| 3ohm_B | 885 | 1-phosphatidylinositol-4,5-bisphosphate phosphodi | 99.11 | |
| 2zkm_X | 799 | 1-phosphatidylinositol-4,5-bisphosphate phosphodie | 99.09 | |
| 3ohm_B | 885 | 1-phosphatidylinositol-4,5-bisphosphate phosphodi | 99.05 | |
| 3qr0_A | 816 | Phospholipase C-beta (PLC-beta); PH domain, EF han | 99.05 | |
| 2zkm_X | 799 | 1-phosphatidylinositol-4,5-bisphosphate phosphodie | 99.01 | |
| 3pfq_A | 674 | PKC-B, PKC-beta, protein kinase C beta type; phosp | 98.94 | |
| 1yrk_A | 126 | NPKC-delta, protein kinase C, delta type; C2 domai | 98.84 | |
| 2enj_A | 138 | NPKC-theta, protein kinase C theta type; beta-sand | 98.77 | |
| 1yrk_A | 126 | NPKC-delta, protein kinase C, delta type; C2 domai | 98.67 | |
| 2enj_A | 138 | NPKC-theta, protein kinase C theta type; beta-sand | 98.64 | |
| 1em2_A | 229 | MLN64 protein; beta barrel, lipid binding protein; | 93.57 | |
| 2r55_A | 231 | STAR-related lipid transfer protein 5; alpha and b | 90.46 | |
| 2pcs_A | 162 | Conserved protein; structural genomics, unknown fu | 90.09 | |
| 1jss_A | 224 | Stard4, cholesterol-regulated start protein 4; sta | 88.72 | |
| 3p0l_A | 221 | Steroidogenic acute regulatory protein, mitochond; | 87.34 | |
| 2wxf_A | 940 | Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca | 87.04 | |
| 1icx_A | 155 | Protein LLR18A, LLPR10.1A; 7-stranded beta sheet, | 86.92 | |
| 2wxf_A | 940 | Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca | 86.85 | |
| 2qim_A | 158 | PR10.2B; trans-zeatin, cytokinin, plant hormones, | 85.29 | |
| 1tw0_A | 157 | Pathogenesis-related class 10 protein SPE-16; seve | 83.78 | |
| 3hhm_A | 1091 | Phosphatidylinositol-4,5-bisphosphate 3-kinase cat | 81.91 | |
| 1e09_A | 159 | PRU AV 1; allergen, major cherry allergen, pathoge | 80.6 |
| >2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.85 E-value=1.4e-20 Score=206.50 Aligned_cols=166 Identities=23% Similarity=0.397 Sum_probs=139.4
Q ss_pred CcEEEEEEEEeecCC------CCCcEEEEEECC---eEEeecCccCCCCCeEeeEEEEEEe--cCCCceEEEEEEecCCC
Q 001987 3 STRLYVYVLQGQDLL------AKDSYVKVQIGK---HKSKSRILKNNSNPVWNEEFVFRVH--NIDDEELVVSVFQHNDD 71 (985)
Q Consensus 3 ~~~L~V~V~~Ar~L~------~~DPyv~v~l~~---~~~kT~v~~~t~nP~wnE~f~f~v~--~~~~~~L~~~V~D~d~~ 71 (985)
.+.|.|+|++|+||+ .+||||++++++ ++++|+++++++||.|||+|.|.+. +.....|.|+|||+|
T Consensus 18 ~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~T~~~~~~~nP~wne~f~f~v~~~~~~~~~l~~~V~d~d-- 95 (284)
T 2r83_A 18 NNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELAGKTLVMAVYDFD-- 95 (284)
T ss_dssp TTEEEEEEEEEECCCCCSSSSSCCEEEEEEEETCTTSCEECCCCCSCSSCEEEEEEEECCCGGGCTTCEEEEEEEECC--
T ss_pred CCEEEEEEEEeeCCCCCCCCCCCCeEEEEEEEcCCCceEeCCcccCCCCCeeCceEEEEechHHhCcCEEEEEEEECC--
Confidence 578999999999998 689999999964 4689999999999999999999986 235689999999999
Q ss_pred CCCCCCCCCeeEEEEEeCccccccCCCCCCCeEEEeecCCCCCCCCccccEEEEEEEEEecCCeeeEEEEeeeccCCCCC
Q 001987 72 SGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTNKDCGKILLTISLNGKGHNLSSNRLLYLHSNVSSN 151 (985)
Q Consensus 72 ~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~~G~I~lsl~~~~~~~~l~v~v~~~~a~~L~~~ 151 (985)
+ .+++++||++.++|.++..+ .....|++|......+ ....|+|++++.|.+..+.+.+.|+. |++|+.+
T Consensus 96 -~--~~~~~~lG~~~i~l~~l~~~---~~~~~w~~L~~~~~~~--~~~~G~i~l~l~~~p~~~~l~v~v~~--a~~L~~~ 165 (284)
T 2r83_A 96 -R--FSKHDIIGEFKVPMNTVDFG---HVTEEWRDLQSAEKEE--QEKLGDICFSLRYVPTAGKLTVVILE--AKNLKKM 165 (284)
T ss_dssp -S--SSCCCEEEEEEEEGGGCCCS---SCEEEEEECBCCSSCC--CCCCCEEEEEEEEETTTTEEEEEEEE--EESCCCC
T ss_pred -C--CCCCceeEEEEEcchhcccC---CcceeEEEeecccccc--ccccccEEEEEEecCcCCceEEEEEE--eECCCCc
Confidence 4 57899999999999999765 2457899998433221 34689999999999999999988886 8899999
Q ss_pred CCCCCCCCeEEEEEcCCCCCCcccccccc
Q 001987 152 ESKELEDPCVLSHDVSCSKAPCLDVTEGN 180 (985)
Q Consensus 152 d~~g~sdP~vkv~l~~~~~~~~~k~~~~~ 180 (985)
|..|.+||||++++..++....+++|+..
T Consensus 166 d~~~~~dpyv~v~~~~~~~~~~~~kT~v~ 194 (284)
T 2r83_A 166 DVGGLSDPYVKIHLMQNGKRLKKKKTTIK 194 (284)
T ss_dssp STTSCCCEEEEEEEEETTEEEEEEECCCC
T ss_pred CCCCCcCeEEEEEEEeCCcEeeeecccee
Confidence 99999999999999887655445555444
|
| >1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A | Back alignment and structure |
|---|
Probab=99.84 E-value=2.7e-20 Score=205.43 Aligned_cols=167 Identities=24% Similarity=0.347 Sum_probs=137.7
Q ss_pred CcEEEEEEEEeecCC------CCCcEEEEEE---CCeEEeecCccCCCCCeEeeEEEEEEe--cCCCceEEEEEEecCCC
Q 001987 3 STRLYVYVLQGQDLL------AKDSYVKVQI---GKHKSKSRILKNNSNPVWNEEFVFRVH--NIDDEELVVSVFQHNDD 71 (985)
Q Consensus 3 ~~~L~V~V~~Ar~L~------~~DPyv~v~l---~~~~~kT~v~~~t~nP~wnE~f~f~v~--~~~~~~L~~~V~D~d~~ 71 (985)
.+.|.|+|++|+||+ .+||||+|++ +.++++|+++++|+||.|||+|.|.+. +.....|.|+|||+|
T Consensus 19 ~~~L~v~v~~a~~L~~~d~~g~~dPyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~~~V~d~d-- 96 (296)
T 1dqv_A 19 SDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLAELAQRKLHFSVYDFD-- 96 (296)
T ss_dssp SCEEEEEEEEEECCCCCSTTSCCCEEEEEECTTSTTSCEECCCCCSCSSCEEEEEEEEECCGGGGSSCCCEEEEEECC--
T ss_pred CCEEEEEEEEeECCCCcCCCCCcCeEEEEEEEcCCCeeEeCCccCCCCCCcEeeEEEEEecHHHhcCCEEEEEEEEcC--
Confidence 578999999999998 5899999999 356799999999999999999999985 234579999999999
Q ss_pred CCCCCCCCCeeEEEEEe-CccccccCCCCCCCeEEEeecCCCCCCCCccccEEEEEEEEEecCCeeeEEEEeeeccCCCC
Q 001987 72 SGLFGSSGELMGRVRVP-VSSIAAEDNHMLPPTWFSLETPKTRKFTNKDCGKILLTISLNGKGHNLSSNRLLYLHSNVSS 150 (985)
Q Consensus 72 ~~~~~~~d~~lG~~~i~-L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~~G~I~lsl~~~~~~~~l~v~v~~~~a~~L~~ 150 (985)
+ .+++++||++.++ +.++.... .....|++|.... .. ....|+|.+++.|.+..+.+.+.|++ |++|+.
T Consensus 97 -~--~~~~~~iG~~~i~~l~~~~~~~--~~~~~w~~L~~~~-~~--~~~~G~i~vsl~y~~~~~~l~v~v~~--a~~L~~ 166 (296)
T 1dqv_A 97 -R--FSRHDLIGQVVLDNLLELAEQP--PDRPLWRDILEGG-SE--KADLGELNFSLCYLPTAGLLTVTIIK--ASNLKA 166 (296)
T ss_dssp -S--SSCCCEEEEEECCCTTGGGSSC--SSCCCCEECBCCS-SC--CSCCCEEEEEEEEETTTTEEEEEEEE--EESCCC
T ss_pred -C--CCCCceEEEEEeccccccccCC--ccceeeecccccc-cc--ccccceEEEEEEeccccceeEEEEEE--eecCCc
Confidence 4 5789999999996 55544321 2356799998332 22 44689999999999999999999886 899999
Q ss_pred CCCCCCCCCeEEEEEcCCCCCCccccccccc
Q 001987 151 NESKELEDPCVLSHDVSCSKAPCLDVTEGNH 181 (985)
Q Consensus 151 ~d~~g~sdP~vkv~l~~~~~~~~~k~~~~~~ 181 (985)
+|..|.+||||++++.++++...+++|+..+
T Consensus 167 ~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~~ 197 (296)
T 1dqv_A 167 MDLTGFSDPYVKASLISEGRRLKKRKTSIKK 197 (296)
T ss_dssp CSSSSCCCEEEEECCCTTCCTTSCEECCCCC
T ss_pred cCCCCCCCcEEEEEEEeCCcCccceecceec
Confidence 9999999999999999877666666666554
|
| >2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.2e-20 Score=186.39 Aligned_cols=116 Identities=22% Similarity=0.314 Sum_probs=102.5
Q ss_pred CCCeEEEEEEEEeecCCCCCC----------CCCCCcEEEEEECCEE-EEeeeccCCCCCeEeEEEEEEeecCCCCEEEE
Q 001987 533 GDGWVLTVALVEGVNLASSEM----------TGLSDPYVVFTCNGKT-RTSSVQLQTCDPQWHDILEFDAMEEPPSVLDV 601 (985)
Q Consensus 533 ~~~g~L~V~v~~a~~L~~~d~----------~g~~DPyv~v~~~~~~-~kT~~~~~tlnP~Wne~f~f~v~~~~~~~L~v 601 (985)
...|.|+|+|++|+||+++|. .|.+||||++++++++ .+|+++++|+||+|||+|.|.+.. ...|.|
T Consensus 26 ~~~g~L~V~VieA~~L~~~D~~~~~~~f~~~~g~sDPYv~v~l~~~~~~kT~v~~ktlnP~WNE~F~f~v~~--~~~L~~ 103 (157)
T 2fk9_A 26 KFNGYLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSVDQVRVGQTSTKQKTNKPTYNEEFCANVTD--GGHLEL 103 (157)
T ss_dssp CEEEEEEEEEEEEECCCCCHHHHHTTTSSSSCCCCCEEEEEEETTEEEEECCCCSSCSSCEEEEEEEEEEEE--ECEEEE
T ss_pred cCccEEEEEEEEEECCCCccccccccccccCCCCCCeEEEEEECCEeeEEeeecCCCCCCccCcEEEEEcCC--CCEEEE
Confidence 457899999999999999883 3679999999999865 699999999999999999999643 468999
Q ss_pred EEEecCCCCCCCCccceEEEEeeccccC----cccceEEEccccccCCcceeEEEEEeee
Q 001987 602 EVFDFDGPFDQATSLGHAEINFLKHTST----ELADMWVSLEGKLAQSAQSKVHLRIFLE 657 (985)
Q Consensus 602 ~V~D~d~~~~~dd~lG~~~i~l~~l~~~----~~~~~w~~L~~~~~~~~~g~l~l~~~ls 657 (985)
+|||+|. +++||+||++.|+|.++..+ ...+.|++|++ +|+|+|++.++
T Consensus 104 ~V~D~d~-~~~dd~iG~~~i~l~~l~~~~~~~~~~~~W~~L~~------~G~i~l~l~~~ 156 (157)
T 2fk9_A 104 AVFHETP-LGYDHFVANCTLQFQELLRTTGASDTFEGWVDLEP------EGKVFVVITLT 156 (157)
T ss_dssp EEEECCS-SSSCEEEEEEEEEHHHHHHHHTTCSEEEEEEECBS------SCEEEEEEEEC
T ss_pred EEEECCC-CCCCCEEEEEEEEHHHhhcccCCCCcccEEEECCC------CcEEEEEEEEE
Confidence 9999998 79999999999999998755 66899999973 79999999875
|
| >2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.83 E-value=7.3e-20 Score=178.51 Aligned_cols=124 Identities=22% Similarity=0.310 Sum_probs=109.8
Q ss_pred CCeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCEEEEeeeccCCCCCeEeEEEEEEeecC---CCCEEEEEEEecCCCC
Q 001987 534 DGWVLTVALVEGVNLASSEMTGLSDPYVVFTCNGKTRTSSVQLQTCDPQWHDILEFDAMEE---PPSVLDVEVFDFDGPF 610 (985)
Q Consensus 534 ~~g~L~V~v~~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~~~~~tlnP~Wne~f~f~v~~~---~~~~L~v~V~D~d~~~ 610 (985)
..|.|.|+|++|+||+..|. |.+||||++++++++++|+++++++||+|||+|.|.+... ....|.|+|||+|. +
T Consensus 5 ~~g~L~v~v~~a~~L~~~~~-g~~dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~~~l~i~V~d~d~-~ 82 (140)
T 2dmh_A 5 SSGMLRVIVESASNIPKTKF-GKPDPIVSVIFKDEKKKTKKVDNELNPVWNEILEFDLRGIPLDFSSSLGIIVKDFET-I 82 (140)
T ss_dssp BCCEEEEEEEEEESCCCCSS-SCCCEEEEEECSSCEEECCCCCSCSSCEEEEEEEEECSSCCCCTTCEEEEEEEETTC-S
T ss_pred CCcEEEEEEEEeeCCCCCCC-CCCCeEEEEEECCEeEEeeeecCCCCCccCcEEEEEecccccCCCCEEEEEEEECCC-C
Confidence 45799999999999999998 9999999999999999999999999999999999996432 46799999999998 7
Q ss_pred CCCCccceEEEEeeccccCcccceEEE---ccccccCCcceeEEEEEeeecC
Q 001987 611 DQATSLGHAEINFLKHTSTELADMWVS---LEGKLAQSAQSKVHLRIFLENN 659 (985)
Q Consensus 611 ~~dd~lG~~~i~l~~l~~~~~~~~w~~---L~~~~~~~~~g~l~l~~~ls~~ 659 (985)
++|++||++.|+|.++..+...+.|++ |.+..+....|.|+|++.+...
T Consensus 83 ~~~~~lG~~~i~l~~l~~~~~~~~w~~l~~l~~~~~~~~~G~l~l~~~~~p~ 134 (140)
T 2dmh_A 83 GQNKLIGTATVALKDLTGDQSRSLPYKLISLLNEKGQDTGATIDLVIGYDPP 134 (140)
T ss_dssp SSCCCCEEEEEEGGGTCSSSCEEEEEEEEEEECTTCCEEEEEEEEEEEECCC
T ss_pred CCCceEEEEEEEHHHhccCCCceeEEeeeeccCCCCCCCCCEEEEEEEEECC
Confidence 899999999999999988888889988 6655555567999999977654
|
| >3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} SCOP: b.7.1.0 PDB: 3kwt_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=2.3e-19 Score=176.75 Aligned_cols=121 Identities=21% Similarity=0.381 Sum_probs=106.2
Q ss_pred CCCeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCEEEEeeeccCCCCCeEeEEEEEEeecCCCCEEEEEEEecCCCC--
Q 001987 533 GDGWVLTVALVEGVNLASSEMTGLSDPYVVFTCNGKTRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGPF-- 610 (985)
Q Consensus 533 ~~~g~L~V~v~~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~~~~~tlnP~Wne~f~f~v~~~~~~~L~v~V~D~d~~~-- 610 (985)
.+.|.|+|+|++|++|+++|.+|.+||||++++++++++|+++++++||+|||+|.|.+ ..+...|.|+|||+|. +
T Consensus 14 ~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~~~~~t~nP~Wne~f~f~v-~~~~~~l~~~v~d~d~-~~~ 91 (148)
T 3kwu_A 14 KWSAKISITVVCAQGLQAKDKTGSSDPYVTVQVGKTKKRTKTIYGNLNPVWEENFHFEC-HNSSDRIKVRVLDEDD-DIK 91 (148)
T ss_dssp -CCEEEEEEEEEEESCCCCSTTSCCCEEEEEEETTEEEECCCCCSCSSCEEEEEEEEEE-CSTTCEEEEEEEECCC-SHH
T ss_pred ccccEEEEEEEeeeCCCCCCCCCCcCeEEEEEECCEEEECCccCCCCCCCcccEEEEEe-cCCCCEEEEEEEECCC-Ccc
Confidence 45789999999999999999999999999999999999999999999999999999995 4456899999999997 5
Q ss_pred ---------CCCCccceEEEEeeccccCcccceEEEcccccc-CCcceeEEEEEeee
Q 001987 611 ---------DQATSLGHAEINFLKHTSTELADMWVSLEGKLA-QSAQSKVHLRIFLE 657 (985)
Q Consensus 611 ---------~~dd~lG~~~i~l~~l~~~~~~~~w~~L~~~~~-~~~~g~l~l~~~ls 657 (985)
++|++||++.|+|.++ ....+.|++|....+ ....|.|+|++.++
T Consensus 92 ~~~~~~~~~~~~~~lG~~~i~l~~l--~~~~~~w~~L~~~~~~~~~~G~i~l~l~~e 146 (148)
T 3kwu_A 92 SRVKQRFKRESDDFLGQTIIEVRTL--SGEMDVWYNLDKRTDKSAVSGAIRLHISVE 146 (148)
T ss_dssp HHHHTTTSSCSSEEEEEEEEEGGGC--CSEEEEEEECBCSSTTCCCCCEEEEEEEEE
T ss_pred ccccccccCCCCccEEEEEEEHHHC--cCCCCEEEEcccCCCCCCCceEEEEEEEEE
Confidence 7899999999999998 345689999986433 33579999999775
|
| >2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.81 E-value=1.7e-19 Score=174.24 Aligned_cols=120 Identities=23% Similarity=0.399 Sum_probs=106.2
Q ss_pred CCCeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCEEEEeeeccCCCCCeEeEEEEEEeecCCCCEEEEEEEecCCCCCC
Q 001987 533 GDGWVLTVALVEGVNLASSEMTGLSDPYVVFTCNGKTRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGPFDQ 612 (985)
Q Consensus 533 ~~~g~L~V~v~~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~~~~~tlnP~Wne~f~f~v~~~~~~~L~v~V~D~d~~~~~ 612 (985)
...|.|+|+|++|++|+++|..|.+||||++++++++++|+++++++||+|||+|.|.+ .++...|.|+|||+|. +++
T Consensus 10 ~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~-~~~~~~l~i~V~d~d~-~~~ 87 (133)
T 2ep6_A 10 KDVGILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPI-KDIHDVLEVTVFDEDG-DKP 87 (133)
T ss_dssp CCSEEEEEEEEEEESCCCSSSSSCCCEEEEEEETTEEEECCCCSSCSSCCCCEEEEEEE-SCTTCEEEEEEEEEET-TEE
T ss_pred CCceEEEEEEEeeECCCCCCCCCCcCeEEEEEECCEEEEeeeecCCCCCccccEEEEEe-cCCCCEEEEEEEECCC-CCC
Confidence 35689999999999999999999999999999999999999999999999999999995 4556899999999998 789
Q ss_pred CCccceEEEEeeccccCcccceEEEccccc-cCCcceeEEEEEee
Q 001987 613 ATSLGHAEINFLKHTSTELADMWVSLEGKL-AQSAQSKVHLRIFL 656 (985)
Q Consensus 613 dd~lG~~~i~l~~l~~~~~~~~w~~L~~~~-~~~~~g~l~l~~~l 656 (985)
|++||++.|+|.++..+ ...|++|.... .....|.|+|++.+
T Consensus 88 ~~~lG~~~i~l~~l~~~--~~~w~~L~~~~~~~~~~G~i~l~i~~ 130 (133)
T 2ep6_A 88 PDFLGKVAIPLLSIRDG--QPNCYVLKNKDLEQAFKGVIYLEMDL 130 (133)
T ss_dssp EEECCBCEEEGGGCCSS--CCEECCCBCSCTTSCCSSEEEEEEEE
T ss_pred CCeeEEEEEEHHHccCC--CceEEEeecCCCCCccceEEEEEEEE
Confidence 99999999999998664 36899998743 33567999998854
|
| >1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.81 E-value=1.1e-19 Score=176.42 Aligned_cols=117 Identities=21% Similarity=0.342 Sum_probs=101.8
Q ss_pred CCeEEEEEEEEeecCCCCCCCCC-----------CCcEEEEEECCEE-EEeeeccCCCCCeEeEEEEEEeecCCCCEEEE
Q 001987 534 DGWVLTVALVEGVNLASSEMTGL-----------SDPYVVFTCNGKT-RTSSVQLQTCDPQWHDILEFDAMEEPPSVLDV 601 (985)
Q Consensus 534 ~~g~L~V~v~~a~~L~~~d~~g~-----------~DPyv~v~~~~~~-~kT~~~~~tlnP~Wne~f~f~v~~~~~~~L~v 601 (985)
..|.|+|+|++|+||++.|.+|+ +||||+++++++. .+|+++++|+||+|||+|.|.+... ..|.|
T Consensus 4 ~~g~L~v~v~~a~~L~~~d~~~~~~~g~~~~~~~~DPyv~v~l~~~~~~~T~~~~~t~nP~WnE~f~f~v~~~--~~L~~ 81 (136)
T 1gmi_A 4 FNGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAWHDEFVTDVCNG--RKIEL 81 (136)
T ss_dssp EEEEEEEEEEEEESCCCCHHHHCC-CCSSCCCCCCCEEEEEEETTEEEEECCCCSSCSSCEEEEEEEEEEEEE--CEEEE
T ss_pred cceEEEEEEEeCcCCCCcccccccccccccCCcCcCcEEEEEECCeEeeeeeEECCCcCCccCCEEEEEecCC--CEEEE
Confidence 45799999999999999886554 9999999998765 6999999999999999999997543 89999
Q ss_pred EEEecCCCCCCCCccceEEEEeeccccCc--ccceEEEccccccCCcceeEEEEEeeecC
Q 001987 602 EVFDFDGPFDQATSLGHAEINFLKHTSTE--LADMWVSLEGKLAQSAQSKVHLRIFLENN 659 (985)
Q Consensus 602 ~V~D~d~~~~~dd~lG~~~i~l~~l~~~~--~~~~w~~L~~~~~~~~~g~l~l~~~ls~~ 659 (985)
+|||+|. +++||+||++.|+|.++..+. ..+.|++|.+ .|+|+|++.+.+.
T Consensus 82 ~V~d~d~-~~~dd~iG~~~i~l~~l~~~~~~~~~~w~~L~~------~G~i~l~l~~~~~ 134 (136)
T 1gmi_A 82 AVFHDAP-IGYDDFVANCTIQFEELLQNGSRHFEDWIDLEP------EGKVYVIIDLSGS 134 (136)
T ss_dssp EEEECCS-SSSCEEEEEEEEEHHHHTSTTCSEEEEEEECBS------SCEEEEEEEEEEE
T ss_pred EEEeCCC-CCCCCEEEEEEEEHHHhcccCCCCccEEEEcCC------CeEEEEEEEEEec
Confidence 9999998 799999999999999987643 3488999973 7899999988654
|
| >1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.81 E-value=1.5e-19 Score=175.39 Aligned_cols=123 Identities=20% Similarity=0.340 Sum_probs=108.1
Q ss_pred CCCeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCEEEEeeecc-CCCCCeEeEEEEEEeecCCCCEEEEEEEecCCCCC
Q 001987 533 GDGWVLTVALVEGVNLASSEMTGLSDPYVVFTCNGKTRTSSVQL-QTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGPFD 611 (985)
Q Consensus 533 ~~~g~L~V~v~~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~~~~-~tlnP~Wne~f~f~v~~~~~~~L~v~V~D~d~~~~ 611 (985)
...|.|+|+|++|++|+..|..|.+||||++++++++++|++++ +++||+|||+|.|.+. .....|.|+|||+|. ++
T Consensus 7 ~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~~~~~~~~nP~Wne~f~f~v~-~~~~~l~~~V~d~~~-~~ 84 (136)
T 1wfj_A 7 GPHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVS-EGTTELKAKIFDKDV-GT 84 (136)
T ss_dssp CCEEEEEEEEEEEEECSSCCSSCSSCCCEEEESSSCEEECCCCTTCCSSCEEEEEEEEEEE-SSCCEEEEEECCSSS-CT
T ss_pred CCcEEEEEEEEeccCCCCcccCCCcCceEEEEECCccceeEeccCCCCCCccCcEEEEEEC-CCCCEEEEEEEECCC-CC
Confidence 35689999999999999999999999999999999999999998 8999999999999965 467899999999998 79
Q ss_pred CCCccceEEEEeecc-ccCcccceEEEccccccCCcceeEEEEEeeecC
Q 001987 612 QATSLGHAEINFLKH-TSTELADMWVSLEGKLAQSAQSKVHLRIFLENN 659 (985)
Q Consensus 612 ~dd~lG~~~i~l~~l-~~~~~~~~w~~L~~~~~~~~~g~l~l~~~ls~~ 659 (985)
+|++||++.|+|.++ ..+.....|++|. ......|.|+|++.+...
T Consensus 85 ~d~~lG~~~i~l~~l~~~~~~~~~w~~L~--~~~~~~G~i~l~l~~~p~ 131 (136)
T 1wfj_A 85 EDDAVGEATIPLEPVFVEGSIPPTAYNVV--KDEEYKGEIWVALSFKPS 131 (136)
T ss_dssp TTCCSEEEEEESHHHHHHSEEEEEEEEEE--ETTEEEEEEEEEEEEEEC
T ss_pred CCceEEEEEEEHHHhccCCCCCcEEEEee--cCCccCEEEEEEEEEEeC
Confidence 999999999999998 4455678899998 233467999999976544
|
| >1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.79 E-value=4.4e-19 Score=169.61 Aligned_cols=114 Identities=16% Similarity=0.289 Sum_probs=100.2
Q ss_pred CeEEEEEEEEeecCCCC---CCCCCCCcEEEEEECC---EEEEeeeccCCCCCeEeEEEEEEeecCCCCEEEEEEEecCC
Q 001987 535 GWVLTVALVEGVNLASS---EMTGLSDPYVVFTCNG---KTRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDG 608 (985)
Q Consensus 535 ~g~L~V~v~~a~~L~~~---d~~g~~DPyv~v~~~~---~~~kT~~~~~tlnP~Wne~f~f~v~~~~~~~L~v~V~D~d~ 608 (985)
.|.|+|+|++|+||+++ |.+|.+||||++++++ ++++|+++++++||+|||+|.|.+.......|.|+|||+|.
T Consensus 2 ~~~L~v~v~~a~~L~~~~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~l~i~V~d~d~ 81 (126)
T 1rlw_A 2 SHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANY 81 (126)
T ss_dssp CEEEEEEEEEEESCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTTSCCEEEEEEEECCS
T ss_pred CcEEEEEEEeeeCCCCCCccccCCCCCCEEEEEEccCCCceEEccccCCCCCCcccceEEEEecCCCCCEEEEEEEECCC
Confidence 47899999999999984 6679999999999985 78999999999999999999999756667899999999998
Q ss_pred CCCCCCccceEEEEeeccccCcccceEEEccccccCCcceeEEEEE
Q 001987 609 PFDQATSLGHAEINFLKHTSTELADMWVSLEGKLAQSAQSKVHLRI 654 (985)
Q Consensus 609 ~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~g~l~l~~ 654 (985)
+ +|++||++.|+|.++..+.....|++|.+ ...|.|++++
T Consensus 82 -~-~~~~iG~~~i~l~~l~~~~~~~~~~~L~~----~~~g~i~~~l 121 (126)
T 1rlw_A 82 -V-MDETLGTATFTVSSMKVGEKKEVPFIFNQ----VTEMVLEMSL 121 (126)
T ss_dssp -S-CCEEEEEEEEEGGGSCTTCEEEEEEEETT----TEEEEEEEEE
T ss_pred -C-CCceeEEEEEEHHHccCCCcEEEEEEcCC----CceEEEEEEE
Confidence 5 58999999999999998888899999985 3455666655
|
| >3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A | Back alignment and structure |
|---|
Probab=99.78 E-value=1.1e-18 Score=172.77 Aligned_cols=122 Identities=19% Similarity=0.336 Sum_probs=99.1
Q ss_pred CCCeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC------EEEEeeeccCCCCCeEeEEEEEEeecCCCCEEEEEEEec
Q 001987 533 GDGWVLTVALVEGVNLASSEMTGLSDPYVVFTCNG------KTRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDF 606 (985)
Q Consensus 533 ~~~g~L~V~v~~a~~L~~~d~~g~~DPyv~v~~~~------~~~kT~~~~~tlnP~Wne~f~f~v~~~~~~~L~v~V~D~ 606 (985)
...+.|+|+|++|+||+.+|.+|.+||||+++++. +.++|+++++++||+|||+|.|.+. .....|.|+|||+
T Consensus 17 ~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~-~~~~~l~~~V~d~ 95 (153)
T 3b7y_A 17 ENSRIVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEEILFRVH-PQQHRLLFEVFDE 95 (153)
T ss_dssp TTCEEEEEEEEEEESCC-------CCEEEEEEEEETTTEEEEEEECCCCSSCSSCCCCEEEEEEEC-TTTCEEEEEEEEC
T ss_pred CCccEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCccceeeeCccccCCCCCCCCCEEEEEec-CCCCEEEEEEEEC
Confidence 34679999999999999999999999999999973 6889999999999999999999954 4567999999999
Q ss_pred CCCCCCCCccceEEEEeeccccCccc------ceEEEccccc-cCCcceeEEEEEee
Q 001987 607 DGPFDQATSLGHAEINFLKHTSTELA------DMWVSLEGKL-AQSAQSKVHLRIFL 656 (985)
Q Consensus 607 d~~~~~dd~lG~~~i~l~~l~~~~~~------~~w~~L~~~~-~~~~~g~l~l~~~l 656 (985)
|. +++|++||++.|+|.++..+... ..|++|.+.. .....|.|+|++.+
T Consensus 96 d~-~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~G~i~l~l~~ 151 (153)
T 3b7y_A 96 NR-LTRDDFLGQVDVPLYPLPTENPRLERPYTFKDFVLHPRSHKSRVKGYLRLKMTY 151 (153)
T ss_dssp CS-SSCCEEEEEEEEECCSCCBCCTTSCCCCCCEEEECBCSSTTCCCCSEEEEEEEE
T ss_pred CC-CcCCCeeEEEEEEHHHcccCCCcccccccccccccccccCCCCcceEEEEEEEE
Confidence 98 78999999999999998766543 5899998743 33567999999976
|
| >3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.8e-18 Score=175.52 Aligned_cols=125 Identities=19% Similarity=0.351 Sum_probs=99.5
Q ss_pred CCCeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC------EEEEeeeccCCCCCeEeEEEEEEeecCCCCEEEEEEEec
Q 001987 533 GDGWVLTVALVEGVNLASSEMTGLSDPYVVFTCNG------KTRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDF 606 (985)
Q Consensus 533 ~~~g~L~V~v~~a~~L~~~d~~g~~DPyv~v~~~~------~~~kT~~~~~tlnP~Wne~f~f~v~~~~~~~L~v~V~D~ 606 (985)
...|.|+|+|++|++|+.+|.+|.+||||++++++ ++++|+++++++||+|||.|.|.+. .....|.|+|||+
T Consensus 5 ~~~g~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~v~-~~~~~L~~~V~d~ 83 (176)
T 3m7f_B 5 DDTRVVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEILFRVL-PQRHRILFEVFDE 83 (176)
T ss_dssp TTCEEEEEEEEEEESCC---CCCCCCEEEEEEEEETTTEEEEEEECCCCSSCSSCEEEEEEEEEEC-TTTCEEEEEEEEC
T ss_pred CCcEEEEEEEEEeeCCCCcCCCCCcCcEEEEEEECCCCCcccceeCceECCCCCCcccceEEEEEc-CCCCEEEEEEEEC
Confidence 45789999999999999999999999999999975 6789999999999999999999964 4567999999999
Q ss_pred CCCCCCCCccceEEEEeeccccCccc-c-----eEEEcccccc-CCcceeEEEEEeeecC
Q 001987 607 DGPFDQATSLGHAEINFLKHTSTELA-D-----MWVSLEGKLA-QSAQSKVHLRIFLENN 659 (985)
Q Consensus 607 d~~~~~dd~lG~~~i~l~~l~~~~~~-~-----~w~~L~~~~~-~~~~g~l~l~~~ls~~ 659 (985)
|. +++|++||++.|+|..+..+... + .|++|..... ....|.|+|++.+...
T Consensus 84 d~-~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~l~~~p~ 142 (176)
T 3m7f_B 84 NR-LTRDDFLGQVDVPLYPLPTENPRMERPYTFKDFVLHPRSHKSRVKGYLRLKMTYLPK 142 (176)
T ss_dssp C-----CEEEEEEEEESCSCCBC------CCCCEEEECBCSSTTCCCCSEEEEEEEECC-
T ss_pred CC-CCCCcEEEEEEEEHHHccccCCcccccccccEEEccccCCCCccCEEEEEEEEEEeC
Confidence 98 79999999999999998776433 2 7999987433 3357999999977655
|
| >3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A | Back alignment and structure |
|---|
Probab=99.77 E-value=3.5e-18 Score=164.76 Aligned_cols=119 Identities=13% Similarity=0.235 Sum_probs=100.0
Q ss_pred CeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC--EEEEeeeccCCCCCeEeEEEEEEeecCCCCEEEEEEEecCCCCCC
Q 001987 535 GWVLTVALVEGVNLASSEMTGLSDPYVVFTCNG--KTRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGPFDQ 612 (985)
Q Consensus 535 ~g~L~V~v~~a~~L~~~d~~g~~DPyv~v~~~~--~~~kT~~~~~tlnP~Wne~f~f~v~~~~~~~L~v~V~D~d~~~~~ 612 (985)
...|+|+|++|++|+++|.+|.+||||++++++ +.++|+++++|+||+|||+|.|.+... ..|.|+|||+|. +++
T Consensus 4 ~~~L~V~v~~a~~L~~~d~~g~sDpyv~v~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~--~~l~~~v~d~d~-~~~ 80 (132)
T 3pyc_A 4 FIKIRLTVLCAKNLAKKDFFRLPDPFAKIVVDGSGQCHSTDTVKNTLDPKWNQHYDLYVGKT--DSITISVWNHKK-IHK 80 (132)
T ss_dssp EEEEEEEEEEEESCCCCSTTCCCCEEEEEEETTTCCEEECCCCSSCSSCEEEEEEEEEEETT--CCEEEEEEEGGG-TTS
T ss_pred eEEEEEEEEEeECCCCCCCCCCcCeEEEEEECCCCceEECCccCCCCCCCccCEEEEEeCCC--CEEEEEEEECCC-CCC
Confidence 357999999999999999999999999999974 889999999999999999999996443 359999999998 666
Q ss_pred ---CCccceEEEEeecc-ccCcccceEEEcccccc---CCcceeEEEEEee
Q 001987 613 ---ATSLGHAEINFLKH-TSTELADMWVSLEGKLA---QSAQSKVHLRIFL 656 (985)
Q Consensus 613 ---dd~lG~~~i~l~~l-~~~~~~~~w~~L~~~~~---~~~~g~l~l~~~l 656 (985)
|++||++.|++..+ ........|++|....+ ....|+|+|.+..
T Consensus 81 ~~~d~~lG~~~i~l~~l~~~~~~~~~~~~L~~~~~~~~~~~~G~i~v~l~~ 131 (132)
T 3pyc_A 81 KQGAGFLGCVRLLSNAISRLKDTGYQRLDLCKLNPSDTDAVRGQIVVSLQT 131 (132)
T ss_dssp STTTTEEEEEEECHHHHHHHTTSCCEEEECBCSSTTCCCCCCSEEEEEEEE
T ss_pred CCCCCceEEEEEeHHHhhcccccCcEEEeeeecCCCCCCceeEEEEEEEEc
Confidence 89999999999987 33445578999986422 2347899988753
|
| >2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.76 E-value=2.6e-18 Score=166.18 Aligned_cols=105 Identities=16% Similarity=0.271 Sum_probs=94.5
Q ss_pred CCeEEEEEEEEeecCCCCCCCCCCCcEEEEEE-----CCEEEEeeeccCCCCCeEeEEEEEE-eecC--CCCEEEEEEEe
Q 001987 534 DGWVLTVALVEGVNLASSEMTGLSDPYVVFTC-----NGKTRTSSVQLQTCDPQWHDILEFD-AMEE--PPSVLDVEVFD 605 (985)
Q Consensus 534 ~~g~L~V~v~~a~~L~~~d~~g~~DPyv~v~~-----~~~~~kT~~~~~tlnP~Wne~f~f~-v~~~--~~~~L~v~V~D 605 (985)
..+.|.|+|++|+||+. +.+|.+||||++++ +..+++|+++++|+||+|||+|.|. +... ....|.|+|||
T Consensus 18 ~~~~L~V~V~~a~~L~~-~~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~~v~~~~l~~~~L~~~V~d 96 (134)
T 2b3r_A 18 RNGTLFIMVMHIKDLVT-EDGADPNPYVKTYLLPDTHKTSKRKTKISRKTRNPTFNEMLVYSGYSKETLRQRELQLSVLS 96 (134)
T ss_dssp ETTEEEEEEEEEECCCC-TTSCCCCEEEEEEEESCSSSCCCEECCCCCSCSSCEEEEEEEEESCCHHHHTTCEEEEEEEE
T ss_pred cCCEEEEEEEEeeCCCC-CCCCCCCeEEEEEEEcCCCCCceecCCcCcCCCCCCCccEEEECCcCHHHhCcCEEEEEEEE
Confidence 35799999999999997 77899999999999 4578999999999999999999999 6432 45799999999
Q ss_pred cCCCCCCCCccceEEEEeeccccCcccceEEEccc
Q 001987 606 FDGPFDQATSLGHAEINFLKHTSTELADMWVSLEG 640 (985)
Q Consensus 606 ~d~~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~~ 640 (985)
+|. +++|++||++.|+|.++..+...+.|++|.+
T Consensus 97 ~d~-~~~~~~lG~~~i~l~~l~~~~~~~~W~~L~~ 130 (134)
T 2b3r_A 97 AES-LRENFFLGGITLPLKDFNLSKETVKWYQLTA 130 (134)
T ss_dssp CCS-SSCCEEEEEEEEEGGGSCTTSCEEEEEECBC
T ss_pred CCC-CCCCcEEEEEEEEhhhccCCCCcceeEECCC
Confidence 998 7999999999999999988888899999986
|
| >3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} SCOP: b.7.1.0 PDB: 3kwt_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=1.3e-17 Score=164.13 Aligned_cols=118 Identities=30% Similarity=0.549 Sum_probs=99.6
Q ss_pred CCCcEEEEEEEEeecCC------CCCcEEEEEECCeEEeecCccCCCCCeEeeEEEEEEecCCCceEEEEEEecCCCCCC
Q 001987 1 MVSTRLYVYVLQGQDLL------AKDSYVKVQIGKHKSKSRILKNNSNPVWNEEFVFRVHNIDDEELVVSVFQHNDDSGL 74 (985)
Q Consensus 1 ~~~~~L~V~V~~Ar~L~------~~DPyv~v~l~~~~~kT~v~~~t~nP~wnE~f~f~v~~~~~~~L~~~V~D~d~~~~~ 74 (985)
+.+++|+|+|++|+||+ .+||||++++++++++|+++++|+||.|||+|.|.+. .....|.|+|||+| .+
T Consensus 14 ~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~~~~~t~nP~Wne~f~f~v~-~~~~~l~~~v~d~d---~~ 89 (148)
T 3kwu_A 14 KWSAKISITVVCAQGLQAKDKTGSSDPYVTVQVGKTKKRTKTIYGNLNPVWEENFHFECH-NSSDRIKVRVLDED---DD 89 (148)
T ss_dssp -CCEEEEEEEEEEESCCCCSTTSCCCEEEEEEETTEEEECCCCCSCSSCEEEEEEEEEEC-STTCEEEEEEEECC---CS
T ss_pred ccccEEEEEEEeeeCCCCCCCCCCcCeEEEEEECCEEEECCccCCCCCCCcccEEEEEec-CCCCEEEEEEEECC---CC
Confidence 35689999999999998 6899999999999999999999999999999999995 34588999999999 31
Q ss_pred ---------CCCCCCeeEEEEEeCccccccCCCCCCCeEEEeecCCCCCCCCccccEEEEEEEEE
Q 001987 75 ---------FGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTNKDCGKILLTISLN 130 (985)
Q Consensus 75 ---------~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~~G~I~lsl~~~ 130 (985)
..+++++||++.+||.++.. ....||+|. ++..+ ....|+|+|+++|.
T Consensus 90 ~~~~~~~~~~~~~~~~lG~~~i~l~~l~~-----~~~~w~~L~-~~~~~--~~~~G~i~l~l~~e 146 (148)
T 3kwu_A 90 IKSRVKQRFKRESDDFLGQTIIEVRTLSG-----EMDVWYNLD-KRTDK--SAVSGAIRLHISVE 146 (148)
T ss_dssp HHHHHHTTTSSCSSEEEEEEEEEGGGCCS-----EEEEEEECB-CSSTT--CCCCCEEEEEEEEE
T ss_pred ccccccccccCCCCccEEEEEEEHHHCcC-----CCCEEEEcc-cCCCC--CCCceEEEEEEEEE
Confidence 02689999999999999943 256899999 44332 44789999999985
|
| >1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.75 E-value=1e-17 Score=162.47 Aligned_cols=115 Identities=18% Similarity=0.399 Sum_probs=98.5
Q ss_pred CCCcEEEEEEEEeecCC------C-----------CCcEEEEEECCeE-EeecCccCCCCCeEeeEEEEEEecCCCceEE
Q 001987 1 MVSTRLYVYVLQGQDLL------A-----------KDSYVKVQIGKHK-SKSRILKNNSNPVWNEEFVFRVHNIDDEELV 62 (985)
Q Consensus 1 ~~~~~L~V~V~~Ar~L~------~-----------~DPyv~v~l~~~~-~kT~v~~~t~nP~wnE~f~f~v~~~~~~~L~ 62 (985)
|..+.|+|+|++|+||+ . +||||+|++++.. .+|+++++|+||.|||+|.|.+... ..|.
T Consensus 3 ~~~g~L~v~v~~a~~L~~~d~~~~~~~g~~~~~~~~DPyv~v~l~~~~~~~T~~~~~t~nP~WnE~f~f~v~~~--~~L~ 80 (136)
T 1gmi_A 3 VFNGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAWHDEFVTDVCNG--RKIE 80 (136)
T ss_dssp CEEEEEEEEEEEEESCCCCHHHHCC-CCSSCCCCCCCEEEEEEETTEEEEECCCCSSCSSCEEEEEEEEEEEEE--CEEE
T ss_pred ccceEEEEEEEeCcCCCCcccccccccccccCCcCcCcEEEEEECCeEeeeeeEECCCcCCccCCEEEEEecCC--CEEE
Confidence 45789999999999998 3 8999999998765 7999999999999999999998644 8999
Q ss_pred EEEEecCCCCCCCCCCCCeeEEEEEeCccccccCCCCCCCeEEEeecCCCCCCCCccccEEEEEEEEEecC
Q 001987 63 VSVFQHNDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTNKDCGKILLTISLNGKG 133 (985)
Q Consensus 63 ~~V~D~d~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~~G~I~lsl~~~~~~ 133 (985)
|+|||+| + .++|++||++.++|.++...+. .....|++|. +.|+|+|.++|.+.+
T Consensus 81 ~~V~d~d---~--~~~dd~iG~~~i~l~~l~~~~~-~~~~~w~~L~----------~~G~i~l~l~~~~~~ 135 (136)
T 1gmi_A 81 LAVFHDA---P--IGYDDFVANCTIQFEELLQNGS-RHFEDWIDLE----------PEGKVYVIIDLSGSS 135 (136)
T ss_dssp EEEEECC---S--SSSCEEEEEEEEEHHHHTSTTC-SEEEEEEECB----------SSCEEEEEEEEEEEE
T ss_pred EEEEeCC---C--CCCCCEEEEEEEEHHHhcccCC-CCccEEEEcC----------CCeEEEEEEEEEecC
Confidence 9999999 4 6789999999999999986532 2237899987 369999999997653
|
| >3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A | Back alignment and structure |
|---|
Probab=99.74 E-value=2.2e-17 Score=163.50 Aligned_cols=120 Identities=30% Similarity=0.516 Sum_probs=100.1
Q ss_pred CcEEEEEEEEeecCC------CCCcEEEEEECC------eEEeecCccCCCCCeEeeEEEEEEecCCCceEEEEEEecCC
Q 001987 3 STRLYVYVLQGQDLL------AKDSYVKVQIGK------HKSKSRILKNNSNPVWNEEFVFRVHNIDDEELVVSVFQHND 70 (985)
Q Consensus 3 ~~~L~V~V~~Ar~L~------~~DPyv~v~l~~------~~~kT~v~~~t~nP~wnE~f~f~v~~~~~~~L~~~V~D~d~ 70 (985)
.+.|+|+|++|+||+ .+||||+|++.+ ..++|+++++|+||.|||+|.|.+. .....|.|+|||+|
T Consensus 19 ~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~-~~~~~l~~~V~d~d- 96 (153)
T 3b7y_A 19 SRIVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEEILFRVH-PQQHRLLFEVFDEN- 96 (153)
T ss_dssp CEEEEEEEEEEESCC-------CCEEEEEEEEETTTEEEEEEECCCCSSCSSCCCCEEEEEEEC-TTTCEEEEEEEECC-
T ss_pred ccEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCccceeeeCccccCCCCCCCCCEEEEEec-CCCCEEEEEEEECC-
Confidence 468999999999999 689999999973 5689999999999999999999994 45689999999999
Q ss_pred CCCCCCCCCCeeEEEEEeCccccccCCC---CCCCeEEEeecCCCCCCCCccccEEEEEEEEEe
Q 001987 71 DSGLFGSSGELMGRVRVPVSSIAAEDNH---MLPPTWFSLETPKTRKFTNKDCGKILLTISLNG 131 (985)
Q Consensus 71 ~~~~~~~~d~~lG~~~i~L~~l~~~~~~---~~~~~W~~L~~~~~~~~~~~~~G~I~lsl~~~~ 131 (985)
+ .+++++||++.++|.++...... .....||+|. ++.++ ....|+|+|+++|.|
T Consensus 97 --~--~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~~w~~L~-~~~~~--~~~~G~i~l~l~~~P 153 (153)
T 3b7y_A 97 --R--LTRDDFLGQVDVPLYPLPTENPRLERPYTFKDFVLH-PRSHK--SRVKGYLRLKMTYLP 153 (153)
T ss_dssp --S--SSCCEEEEEEEEECCSCCBCCTTSCCCCCCEEEECB-CSSTT--CCCCSEEEEEEEECC
T ss_pred --C--CcCCCeeEEEEEEHHHcccCCCcccccccccccccc-cccCC--CCcceEEEEEEEEeC
Confidence 4 57899999999999999876431 2236999998 44322 457899999999964
|
| >2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.74 E-value=9.6e-18 Score=169.18 Aligned_cols=120 Identities=16% Similarity=0.215 Sum_probs=99.8
Q ss_pred CCeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCEEEEeeeccCCCCCeEeEEEEEEeecCCCCEEEEEEEecCCCCCCC
Q 001987 534 DGWVLTVALVEGVNLASSEMTGLSDPYVVFTCNGKTRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGPFDQA 613 (985)
Q Consensus 534 ~~g~L~V~v~~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~~~~~tlnP~Wne~f~f~v~~~~~~~L~v~V~D~d~~~~~d 613 (985)
..+.|+|+|++|++|+..+..+.+||||++++++++++|+++++|+||+|||+|.|.+ .+...|.|+|||+|. +++|
T Consensus 34 ~~~~L~V~V~~A~~L~~~~~~~~sDPYv~v~~~~~~~kT~v~~~tlnP~Wne~f~f~v--~~~~~L~~~V~D~d~-~~~d 110 (173)
T 2nq3_A 34 MKSQLQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTEKCNNTNSPKWKQPLTVIV--TPVSKLHFRVWSHQT-LKSD 110 (173)
T ss_dssp CCEEEEEEEEEEEECCCC--CCCCCEEEEEEETTEEEECCCCSSCSSCEEEEEEEEEE--CTTCEEEEEEEECCS-SSCC
T ss_pred CceEEEEEEEEeECCCCcccCCCCCeEEEEEECCEEeEccccCCCCCCeECCEEEEEe--CCCCEEEEEEEECCC-CCCC
Confidence 4678999999999999444455699999999999999999999999999999999996 347899999999998 7899
Q ss_pred CccceEEEEeeccccCc-----ccceEEEccccc-cCCcceeEEEEEee
Q 001987 614 TSLGHAEINFLKHTSTE-----LADMWVSLEGKL-AQSAQSKVHLRIFL 656 (985)
Q Consensus 614 d~lG~~~i~l~~l~~~~-----~~~~w~~L~~~~-~~~~~g~l~l~~~l 656 (985)
++||++.|+|.++..+. ....|++|.... .....|+|++.+.+
T Consensus 111 d~lG~~~i~l~~l~~~~~~~~~~~~~~~~L~~~~~~~~~~G~L~v~l~~ 159 (173)
T 2nq3_A 111 VLLGTAALDIYETLKSNNMKLEEVVVTLQLGGDKEPTETIGDLSICLDG 159 (173)
T ss_dssp EEEEEEEEEHHHHHHHTTTEESSEEEEEEEEESSCTTSEEEEEEEEEES
T ss_pred ceEEEEEEEHHHhcccCCCCcceeEEEEECccCCCCCcccEEEEEEEee
Confidence 99999999999976432 126799998742 23457999888853
|
| >2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.74 E-value=4.9e-18 Score=165.75 Aligned_cols=107 Identities=22% Similarity=0.463 Sum_probs=95.8
Q ss_pred CeEEEEEEEEeecCCCCCCCCCCCcEEEEEEC---CEEEEeeeccCCCCCeEeEEEEEEeec---CCCCEEEEEEEecCC
Q 001987 535 GWVLTVALVEGVNLASSEMTGLSDPYVVFTCN---GKTRTSSVQLQTCDPQWHDILEFDAME---EPPSVLDVEVFDFDG 608 (985)
Q Consensus 535 ~g~L~V~v~~a~~L~~~d~~g~~DPyv~v~~~---~~~~kT~~~~~tlnP~Wne~f~f~v~~---~~~~~L~v~V~D~d~ 608 (985)
.+.|+|+|++|+||+.+|.+|.+||||++++. .++++|+++++++||+|||+|.|.+.. .....|.|+|||+|.
T Consensus 25 ~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~V~d~d~ 104 (141)
T 2d8k_A 25 ESTLTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKVVQRILYLQVLDYDR 104 (141)
T ss_dssp SCCEEEEEEEEESCCCCSSSSCCCEEEEEEEESCCSSEEECCCCTTCSSCCCCEEEEECSCCHHHHTTSEEEEEEEECCS
T ss_pred CCEEEEEEEEeECCCCCCCCCCCCcEEEEEEECCCCccEeCceEcCCCCCccccEEEECccCHHHcccCEEEEEEEECCC
Confidence 46899999999999999999999999999994 468999999999999999999998532 235789999999998
Q ss_pred CCCCCCccceEEEEeeccccCcccceEEEccccc
Q 001987 609 PFDQATSLGHAEINFLKHTSTELADMWVSLEGKL 642 (985)
Q Consensus 609 ~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~~~~ 642 (985)
+++|++||++.|+|.++..+...+.|++|.+..
T Consensus 105 -~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~~~ 137 (141)
T 2d8k_A 105 -FSRNDPIGEVSIPLNKVDLTQMQTFWKDLKPSG 137 (141)
T ss_dssp -SSSCEEEEEEEEETTTSCTTSCEEEEECCEECC
T ss_pred -CCCCcEEEEEEEEhhhhcCCCCccEEEECcCCC
Confidence 799999999999999998888889999998743
|
| >3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.74 E-value=2.8e-18 Score=168.96 Aligned_cols=109 Identities=26% Similarity=0.356 Sum_probs=94.8
Q ss_pred CeEEEEEEEEeecCCCCC-CCCCCCcEEEEEEC-----CEEEEeeeccCCCCCeEeEEEEEEeecC--CCCEEEEEEEec
Q 001987 535 GWVLTVALVEGVNLASSE-MTGLSDPYVVFTCN-----GKTRTSSVQLQTCDPQWHDILEFDAMEE--PPSVLDVEVFDF 606 (985)
Q Consensus 535 ~g~L~V~v~~a~~L~~~d-~~g~~DPyv~v~~~-----~~~~kT~~~~~tlnP~Wne~f~f~v~~~--~~~~L~v~V~D~ 606 (985)
.+.|.|+|++|+||++.| .+|.+||||++++. ..+++|+++++|+||+|||+|.|.+... ....|.|+|||+
T Consensus 22 ~~~L~V~v~~a~~L~~~d~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~~L~~~V~d~ 101 (148)
T 3fdw_A 22 TQSLVVHVKECHQLAYADEAKKRSNPYVKTYLLPDKSRQGKRKTSIKRDTVNPLYDETLRYEIPESLLAQRTLQFSVWHH 101 (148)
T ss_dssp TTEEEEEEEEEESCCCSBTTTTBCCEEEEEEEETCCSGGGEEECCCCSSCSSCEEEEEEEEECCSTTGGGCEEEEEEEEE
T ss_pred CCEEEEEEEEecCCCCcccCCCCCCeEEEEEEEcCCcccCccccccCCCCCCCcEeeEEEEEeChhHhCceEEEEEEEEC
Confidence 468999999999999998 68999999999996 3489999999999999999999996433 245799999999
Q ss_pred CCCCCCCCccceEEEEeeccccCcccceEEEccccccC
Q 001987 607 DGPFDQATSLGHAEINFLKHTSTELADMWVSLEGKLAQ 644 (985)
Q Consensus 607 d~~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~ 644 (985)
|. +++|++||++.|+|.++..+...+.|++|.++...
T Consensus 102 d~-~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~~~~~ 138 (148)
T 3fdw_A 102 GR-FGRNTFLGEAEIQMDSWKLDKKLDHCLPLHGKISA 138 (148)
T ss_dssp CG-GGCEEEEEEEEEEHHHHHHHCCSEEEEECBCC---
T ss_pred CC-CcCCcEEEEEEEEcccccccCCccceEECcCcccc
Confidence 98 78999999999999999888788899999986443
|
| >2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.74 E-value=1.2e-17 Score=161.25 Aligned_cols=116 Identities=28% Similarity=0.475 Sum_probs=99.9
Q ss_pred CCcEEEEEEEEeecCC------CCCcEEEEEECCeEEeecCccCCCCCeEeeEEEEEEecCCCceEEEEEEecCCCCCCC
Q 001987 2 VSTRLYVYVLQGQDLL------AKDSYVKVQIGKHKSKSRILKNNSNPVWNEEFVFRVHNIDDEELVVSVFQHNDDSGLF 75 (985)
Q Consensus 2 ~~~~L~V~V~~Ar~L~------~~DPyv~v~l~~~~~kT~v~~~t~nP~wnE~f~f~v~~~~~~~L~~~V~D~d~~~~~~ 75 (985)
..+.|+|+|++|+||+ .+||||++++++++.+|+++++++||.|||+|.|.+. .....|.|+|||+| .
T Consensus 11 ~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~~-~~~~~l~i~V~d~d---~-- 84 (133)
T 2ep6_A 11 DVGILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPIK-DIHDVLEVTVFDED---G-- 84 (133)
T ss_dssp CSEEEEEEEEEEESCCCSSSSSCCCEEEEEEETTEEEECCCCSSCSSCCCCEEEEEEES-CTTCEEEEEEEEEE---T--
T ss_pred CceEEEEEEEeeECCCCCCCCCCcCeEEEEEECCEEEEeeeecCCCCCccccEEEEEec-CCCCEEEEEEEECC---C--
Confidence 3578999999999999 6899999999999999999999999999999999995 44688999999999 4
Q ss_pred CCCCCeeEEEEEeCccccccCCCCCCCeEEEeecCCCCCCCCccccEEEEEEEEEe
Q 001987 76 GSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTNKDCGKILLTISLNG 131 (985)
Q Consensus 76 ~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~~G~I~lsl~~~~ 131 (985)
.+++++||++.++|.++..+ ...|++|..+ ..+ ....|+|+|+++|..
T Consensus 85 ~~~~~~lG~~~i~l~~l~~~-----~~~w~~L~~~-~~~--~~~~G~i~l~i~~~~ 132 (133)
T 2ep6_A 85 DKPPDFLGKVAIPLLSIRDG-----QPNCYVLKNK-DLE--QAFKGVIYLEMDLIY 132 (133)
T ss_dssp TEEEEECCBCEEEGGGCCSS-----CCEECCCBCS-CTT--SCCSSEEEEEEEEEE
T ss_pred CCCCCeeEEEEEEHHHccCC-----CceEEEeecC-CCC--CccceEEEEEEEEEe
Confidence 57899999999999999653 3589999833 322 457899999999864
|
| >2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.74 E-value=2.7e-18 Score=170.10 Aligned_cols=104 Identities=13% Similarity=0.071 Sum_probs=92.5
Q ss_pred CeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC------EEEEeeeccCCCCCeEeEEEEEEeecC--CCCEEEEEEEec
Q 001987 535 GWVLTVALVEGVNLASSEMTGLSDPYVVFTCNG------KTRTSSVQLQTCDPQWHDILEFDAMEE--PPSVLDVEVFDF 606 (985)
Q Consensus 535 ~g~L~V~v~~a~~L~~~d~~g~~DPyv~v~~~~------~~~kT~~~~~tlnP~Wne~f~f~v~~~--~~~~L~v~V~D~ 606 (985)
.+.|+|+|++|+||+++|.+|.+||||++++.. .+++|+++++|+||+|||+|.|.+... ....|.|+|||+
T Consensus 42 ~~~L~V~Vi~a~~L~~~d~~g~sDPyVkv~l~~~~~~~~~~~kT~v~~~tlnP~wnE~F~f~v~~~~l~~~~L~~~V~d~ 121 (155)
T 2z0u_A 42 NKQFAILIIQLSNLSALLQQQDQKVNIRVAVLPCSESTTCLFRTRPLDASDTLVFNEVFWVSMSYPALHQKTLRVDVCTT 121 (155)
T ss_dssp TTEEEEEEEEEECGGGTCCSCCSEEEEEEEEESCSCHHHHEEECCCEECCSSEEEEEEEEEECCHHHHHHCEEEEEEEEE
T ss_pred CCEEEEEEEEccCcCCcccCCCCCEEEEEEEecCCCCCccceeCCcCCCCCCCccccEEEEEcCHHHhCcCEEEEEEEEC
Confidence 468999999999999999999999999999964 379999999999999999999996432 256899999999
Q ss_pred CCCCCCCCccceEEEEeecccc-CcccceEEEcc
Q 001987 607 DGPFDQATSLGHAEINFLKHTS-TELADMWVSLE 639 (985)
Q Consensus 607 d~~~~~dd~lG~~~i~l~~l~~-~~~~~~w~~L~ 639 (985)
|. +++|++||++.|+|.++.. +.....|++|.
T Consensus 122 d~-~~~~d~iG~~~i~l~~l~~~~~~~~~W~~L~ 154 (155)
T 2z0u_A 122 DR-SHLEECLGGAQISLAEVCRSGERSTRWYNLL 154 (155)
T ss_dssp CT-TSCEEEEEEEEEECTTSCTTCCCEEEEEEEB
T ss_pred CC-CCCCcEEEEEEEEHHHccCCCCccccceEcc
Confidence 98 7999999999999999853 56778999986
|
| >1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.73 E-value=9.3e-18 Score=166.00 Aligned_cols=105 Identities=23% Similarity=0.403 Sum_probs=95.3
Q ss_pred CeEEEEEEEEeecCCCCCCCCCCCcEEEEEE---CCEEEEeeeccCCCCCeEeEEEEEEeecC--CCCEEEEEEEecCCC
Q 001987 535 GWVLTVALVEGVNLASSEMTGLSDPYVVFTC---NGKTRTSSVQLQTCDPQWHDILEFDAMEE--PPSVLDVEVFDFDGP 609 (985)
Q Consensus 535 ~g~L~V~v~~a~~L~~~d~~g~~DPyv~v~~---~~~~~kT~~~~~tlnP~Wne~f~f~v~~~--~~~~L~v~V~D~d~~ 609 (985)
.+.|+|+|++|+||+..|.+|.+||||++++ +.++++|+++++++||+|||+|.|.+... ....|.|+|||+|.
T Consensus 41 ~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d~- 119 (152)
T 1rsy_A 41 NNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDR- 119 (152)
T ss_dssp TTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETTCCSCEECCCCTTCSSCEEEEEEEECCCHHHHTTCEEEEEEEECCS-
T ss_pred CCEEEEEEEEeECCCCccCCCCcCeEEEEEEEcCCCceEeccccCCCCCCcCcccEEEeecHHHcCCCEEEEEEEECCC-
Confidence 4689999999999999999999999999999 45688999999999999999999986432 35799999999998
Q ss_pred CCCCCccceEEEEeeccccCcccceEEEccc
Q 001987 610 FDQATSLGHAEINFLKHTSTELADMWVSLEG 640 (985)
Q Consensus 610 ~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~~ 640 (985)
+++|++||++.|+|.++..+...+.|++|.+
T Consensus 120 ~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~ 150 (152)
T 1rsy_A 120 FSKHDIIGEFKVPMNTVDFGHVTEEWRDLQS 150 (152)
T ss_dssp SSCCEEEEEEEEEGGGCCCSSCEEEEEECBC
T ss_pred CCCCcEEEEEEEEchhccCCCCcceEEECCC
Confidence 7899999999999999988888899999985
|
| >3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.7.1.2 PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=7.8e-18 Score=164.72 Aligned_cols=105 Identities=23% Similarity=0.403 Sum_probs=95.7
Q ss_pred CeEEEEEEEEeecCCCCCCCCCCCcEEEEEE---CCEEEEeeeccCCCCCeEeEEEEEEeecC--CCCEEEEEEEecCCC
Q 001987 535 GWVLTVALVEGVNLASSEMTGLSDPYVVFTC---NGKTRTSSVQLQTCDPQWHDILEFDAMEE--PPSVLDVEVFDFDGP 609 (985)
Q Consensus 535 ~g~L~V~v~~a~~L~~~d~~g~~DPyv~v~~---~~~~~kT~~~~~tlnP~Wne~f~f~v~~~--~~~~L~v~V~D~d~~ 609 (985)
.+.|.|+|++|++|+..|.+|.+||||++++ +.++++|+++++++||+|||+|.|.+... ....|.|+|||+|.
T Consensus 33 ~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d~- 111 (143)
T 3f04_A 33 NNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDR- 111 (143)
T ss_dssp TTEEEEEEEEEECCCCBGGGBCCCEEEEEEEESCCSCCEECCCCCSCSSCEEEEEEEECCCHHHHTTCEEEEEEEECCS-
T ss_pred CCEEEEEEEEecCCCCCCCCCCcCcEEEEEEECCCCccEECccCcCCCCCcCcCeEEEeecHhhcCCCEEEEEEEeCCC-
Confidence 4689999999999999999999999999999 56789999999999999999999996432 35799999999998
Q ss_pred CCCCCccceEEEEeeccccCcccceEEEccc
Q 001987 610 FDQATSLGHAEINFLKHTSTELADMWVSLEG 640 (985)
Q Consensus 610 ~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~~ 640 (985)
+++|++||++.|+|.++..+...+.|++|.+
T Consensus 112 ~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~ 142 (143)
T 3f04_A 112 FSKHDIIGEFKVPMNTVDFGHVTEEWRDLQS 142 (143)
T ss_dssp SSCCEEEEEEEEEGGGCCTTSCEEEEEECBC
T ss_pred CCCCceEEEEEEEHHHccCCCCcceEEECcC
Confidence 7999999999999999998888999999985
|
| >2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.73 E-value=3.2e-17 Score=159.74 Aligned_cols=120 Identities=23% Similarity=0.304 Sum_probs=101.5
Q ss_pred CCcEEEEEEEEeecCC-----CCCcEEEEEECCeEEeecCccCCCCCeEeeEEEEEEecC---CCceEEEEEEecCCCCC
Q 001987 2 VSTRLYVYVLQGQDLL-----AKDSYVKVQIGKHKSKSRILKNNSNPVWNEEFVFRVHNI---DDEELVVSVFQHNDDSG 73 (985)
Q Consensus 2 ~~~~L~V~V~~Ar~L~-----~~DPyv~v~l~~~~~kT~v~~~t~nP~wnE~f~f~v~~~---~~~~L~~~V~D~d~~~~ 73 (985)
..+.|.|+|++|+||+ .+||||+|++.+++++|+++++++||+|||+|.|.+..+ ....|.|+|||+| .
T Consensus 5 ~~g~L~v~v~~a~~L~~~~~g~~dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~~~l~i~V~d~d---~ 81 (140)
T 2dmh_A 5 SSGMLRVIVESASNIPKTKFGKPDPIVSVIFKDEKKKTKKVDNELNPVWNEILEFDLRGIPLDFSSSLGIIVKDFE---T 81 (140)
T ss_dssp BCCEEEEEEEEEESCCCCSSSCCCEEEEEECSSCEEECCCCCSCSSCEEEEEEEEECSSCCCCTTCEEEEEEEETT---C
T ss_pred CCcEEEEEEEEeeCCCCCCCCCCCeEEEEEECCEeEEeeeecCCCCCccCcEEEEEecccccCCCCEEEEEEEECC---C
Confidence 4679999999999999 589999999999999999999999999999999998532 5689999999999 4
Q ss_pred CCCCCCCeeEEEEEeCccccccCCCCCCCeEEE---eecCCCCCCCCccccEEEEEEEEEecC
Q 001987 74 LFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFS---LETPKTRKFTNKDCGKILLTISLNGKG 133 (985)
Q Consensus 74 ~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~---L~~~~~~~~~~~~~G~I~lsl~~~~~~ 133 (985)
.+++++||++.++|.++..+. ....|++ |.++.. ....|+|+|+++|.+..
T Consensus 82 --~~~~~~lG~~~i~l~~l~~~~---~~~~w~~l~~l~~~~~----~~~~G~l~l~~~~~p~~ 135 (140)
T 2dmh_A 82 --IGQNKLIGTATVALKDLTGDQ---SRSLPYKLISLLNEKG----QDTGATIDLVIGYDPPS 135 (140)
T ss_dssp --SSSCCCCEEEEEEGGGTCSSS---CEEEEEEEEEEECTTC----CEEEEEEEEEEEECCCB
T ss_pred --CCCCceEEEEEEEHHHhccCC---CceeEEeeeeccCCCC----CCCCCEEEEEEEEECCC
Confidence 578999999999999997552 3568988 553221 34679999999998753
|
| >3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.73 E-value=4.3e-17 Score=165.41 Aligned_cols=121 Identities=28% Similarity=0.490 Sum_probs=98.0
Q ss_pred CcEEEEEEEEeecCC------CCCcEEEEEECC------eEEeecCccCCCCCeEeeEEEEEEecCCCceEEEEEEecCC
Q 001987 3 STRLYVYVLQGQDLL------AKDSYVKVQIGK------HKSKSRILKNNSNPVWNEEFVFRVHNIDDEELVVSVFQHND 70 (985)
Q Consensus 3 ~~~L~V~V~~Ar~L~------~~DPyv~v~l~~------~~~kT~v~~~t~nP~wnE~f~f~v~~~~~~~L~~~V~D~d~ 70 (985)
.+.|+|+|++|++|+ .+||||+|++.+ .+++|+++++++||.|||+|.|.+. .....|.|+|||+|
T Consensus 7 ~g~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~v~-~~~~~L~~~V~d~d- 84 (176)
T 3m7f_B 7 TRVVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEILFRVL-PQRHRILFEVFDEN- 84 (176)
T ss_dssp CEEEEEEEEEEESCC---CCCCCCEEEEEEEEETTTEEEEEEECCCCSSCSSCEEEEEEEEEEC-TTTCEEEEEEEECC-
T ss_pred cEEEEEEEEEeeCCCCcCCCCCcCcEEEEEEECCCCCcccceeCceECCCCCCcccceEEEEEc-CCCCEEEEEEEECC-
Confidence 578999999999998 689999999975 5689999999999999999999994 55679999999999
Q ss_pred CCCCCCCCCCeeEEEEEeCccccccCCC---CCCCeEEEeecCCCCCCCCccccEEEEEEEEEec
Q 001987 71 DSGLFGSSGELMGRVRVPVSSIAAEDNH---MLPPTWFSLETPKTRKFTNKDCGKILLTISLNGK 132 (985)
Q Consensus 71 ~~~~~~~~d~~lG~~~i~L~~l~~~~~~---~~~~~W~~L~~~~~~~~~~~~~G~I~lsl~~~~~ 132 (985)
+ .++++|||++.++|.++...... .....||+|. ++..+ ....|+|+|++.|.+.
T Consensus 85 --~--~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~w~~L~-~~~~~--~~~~G~l~l~l~~~p~ 142 (176)
T 3m7f_B 85 --R--LTRDDFLGQVDVPLYPLPTENPRMERPYTFKDFVLH-PRSHK--SRVKGYLRLKMTYLPK 142 (176)
T ss_dssp --------CEEEEEEEEESCSCCBC------CCCCEEEECB-CSSTT--CCCCSEEEEEEEECC-
T ss_pred --C--CCCCcEEEEEEEEHHHccccCCcccccccccEEEcc-ccCCC--CccCEEEEEEEEEEeC
Confidence 4 57899999999999999876321 2234899998 44332 4578999999999876
|
| >2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.5e-17 Score=164.09 Aligned_cols=112 Identities=20% Similarity=0.344 Sum_probs=95.4
Q ss_pred CCcEEEEEEEEeecCC----------------CCCcEEEEEECCeE-EeecCccCCCCCeEeeEEEEEEecCCCceEEEE
Q 001987 2 VSTRLYVYVLQGQDLL----------------AKDSYVKVQIGKHK-SKSRILKNNSNPVWNEEFVFRVHNIDDEELVVS 64 (985)
Q Consensus 2 ~~~~L~V~V~~Ar~L~----------------~~DPyv~v~l~~~~-~kT~v~~~t~nP~wnE~f~f~v~~~~~~~L~~~ 64 (985)
..+.|+|+|++|+||+ .+||||+|++++++ .||+++++|+||.|||+|.|.+.+ ...|.|+
T Consensus 27 ~~g~L~V~VieA~~L~~~D~~~~~~~f~~~~g~sDPYv~v~l~~~~~~kT~v~~ktlnP~WNE~F~f~v~~--~~~L~~~ 104 (157)
T 2fk9_A 27 FNGYLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSVDQVRVGQTSTKQKTNKPTYNEEFCANVTD--GGHLELA 104 (157)
T ss_dssp EEEEEEEEEEEEECCCCCHHHHHTTTSSSSCCCCCEEEEEEETTEEEEECCCCSSCSSCEEEEEEEEEEEE--ECEEEEE
T ss_pred CccEEEEEEEEEECCCCccccccccccccCCCCCCeEEEEEECCEeeEEeeecCCCCCCccCcEEEEEcCC--CCEEEEE
Confidence 4579999999999998 17999999998866 799999999999999999999853 4689999
Q ss_pred EEecCCCCCCCCCCCCeeEEEEEeCcccccc-CCCCCCCeEEEeecCCCCCCCCccccEEEEEEEEE
Q 001987 65 VFQHNDDSGLFGSSGELMGRVRVPVSSIAAE-DNHMLPPTWFSLETPKTRKFTNKDCGKILLTISLN 130 (985)
Q Consensus 65 V~D~d~~~~~~~~~d~~lG~~~i~L~~l~~~-~~~~~~~~W~~L~~~~~~~~~~~~~G~I~lsl~~~ 130 (985)
|||+| + .++|++||++.|||.++..+ +.......||+|. +.|+|+|.++|.
T Consensus 105 V~D~d---~--~~~dd~iG~~~i~l~~l~~~~~~~~~~~~W~~L~----------~~G~i~l~l~~~ 156 (157)
T 2fk9_A 105 VFHET---P--LGYDHFVANCTLQFQELLRTTGASDTFEGWVDLE----------PEGKVFVVITLT 156 (157)
T ss_dssp EEECC---S--SSSCEEEEEEEEEHHHHHHHHTTCSEEEEEEECB----------SSCEEEEEEEEC
T ss_pred EEECC---C--CCCCCEEEEEEEEHHHhhcccCCCCcccEEEECC----------CCcEEEEEEEEE
Confidence 99999 4 67899999999999998865 1113467899998 269999999883
|
| >2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.73 E-value=1.1e-17 Score=160.57 Aligned_cols=103 Identities=19% Similarity=0.379 Sum_probs=87.7
Q ss_pred CeEEEEEEEEeecCCCCCCCCCCCcEEEEEE-----CCEEEEeeeccCCCCCeEeEEEEEEeec---CCCCEEEEEEEec
Q 001987 535 GWVLTVALVEGVNLASSEMTGLSDPYVVFTC-----NGKTRTSSVQLQTCDPQWHDILEFDAME---EPPSVLDVEVFDF 606 (985)
Q Consensus 535 ~g~L~V~v~~a~~L~~~d~~g~~DPyv~v~~-----~~~~~kT~~~~~tlnP~Wne~f~f~v~~---~~~~~L~v~V~D~ 606 (985)
.+.|.|+|++|+||+++|.+|.+||||++++ +.++++|+++++|+||+|||+|.|.+.. .....|.|+|||+
T Consensus 17 ~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~~~V~d~ 96 (129)
T 2bwq_A 17 GHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWDQ 96 (129)
T ss_dssp TTEEEEEEEEEESCCCCTTSCCBCEEEEEEEESSCSGGGEEECCCCSSBSSCEEEEEEEECSCCGGGGGGCEEEEEEEEC
T ss_pred CCEEEEEEEEeeCCCCCCCCCCCCCEEEEEEecCCCCCcceecccccCCCCCccccEEEEccCCHHHhcCCeEEEEEEEC
Confidence 4689999999999999999999999999999 4678999999999999999999999532 1356999999999
Q ss_pred CCCCCC--CCccceEEEEeeccccCcccceEEEcc
Q 001987 607 DGPFDQ--ATSLGHAEINFLKHTSTELADMWVSLE 639 (985)
Q Consensus 607 d~~~~~--dd~lG~~~i~l~~l~~~~~~~~w~~L~ 639 (985)
|. +++ |++||++.|+|.++.... .+.|++|+
T Consensus 97 d~-~~~~~~~~lG~~~i~l~~l~~~~-~~~W~~Lq 129 (129)
T 2bwq_A 97 AR-VREEESEFLGEILIELETALLDD-EPHWYKLQ 129 (129)
T ss_dssp --------CEEEEEEEEEGGGCCCSS-CEEEEECC
T ss_pred Cc-CcCcCCceeEEEEEEccccCCCc-CCccEECc
Confidence 98 676 999999999999987655 88999985
|
| >1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.72 E-value=3.3e-18 Score=167.12 Aligned_cols=105 Identities=21% Similarity=0.377 Sum_probs=93.7
Q ss_pred CeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCE--------------EEEeeeccCCCCCeEeEEEEEE-eec--CCCC
Q 001987 535 GWVLTVALVEGVNLASSEMTGLSDPYVVFTCNGK--------------TRTSSVQLQTCDPQWHDILEFD-AME--EPPS 597 (985)
Q Consensus 535 ~g~L~V~v~~a~~L~~~d~~g~~DPyv~v~~~~~--------------~~kT~~~~~tlnP~Wne~f~f~-v~~--~~~~ 597 (985)
.|.|.|+|++|+||+++|.+|.+||||++++++. +++|+++++|+||+|||+|.|. +.. ....
T Consensus 17 ~~~L~V~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~v~~~~l~~~ 96 (142)
T 1rh8_A 17 LGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEWNQTVIYKSISMEQLMKK 96 (142)
T ss_dssp TTEEEEEEEEEESCCCCSSSSCSCCEEEEEETTSSCCCEECCCCCHHHHTTTTTTHHHHSCEEEEEEEECSCCHHHHTTC
T ss_pred CCEEEEEEEEecCCCCCCCCCCCCceEEEEEecCCCcccccccccccceeeccccCCCCCCCCCCEEEECCcCHHHccCC
Confidence 3589999999999999999999999999999752 5789999999999999999997 432 2467
Q ss_pred EEEEEEEecCCCCCCCCccceEEEEeeccccCcccceEEEccc
Q 001987 598 VLDVEVFDFDGPFDQATSLGHAEINFLKHTSTELADMWVSLEG 640 (985)
Q Consensus 598 ~L~v~V~D~d~~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~~ 640 (985)
.|.|+|||+|. +++|++||++.|+|.++..+...+.|++|.+
T Consensus 97 ~l~i~V~d~d~-~~~~~~lG~~~i~l~~l~~~~~~~~W~~L~~ 138 (142)
T 1rh8_A 97 TLEVTVWDYDR-FSSNDFLGEVLIDLSSTSHLDNTPRWYPLKE 138 (142)
T ss_dssp EEEEEEEEECS-SSCEEEEEEEEEETTSCGGGTTCCEEEECBC
T ss_pred EEEEEEEECCC-CCCCceEEEEEEeccccccCCCCCeEEECCc
Confidence 99999999998 7999999999999999987778899999986
|
| >1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.72 E-value=3e-17 Score=159.52 Aligned_cols=103 Identities=21% Similarity=0.288 Sum_probs=90.2
Q ss_pred CeEEEEEEEEeecCCCCCCCCCCCcEEEEEEC---C-EEEEeeeccCCCCCeEeEEEEEEeecC--CCCEEEEEEEecCC
Q 001987 535 GWVLTVALVEGVNLASSEMTGLSDPYVVFTCN---G-KTRTSSVQLQTCDPQWHDILEFDAMEE--PPSVLDVEVFDFDG 608 (985)
Q Consensus 535 ~g~L~V~v~~a~~L~~~d~~g~~DPyv~v~~~---~-~~~kT~~~~~tlnP~Wne~f~f~v~~~--~~~~L~v~V~D~d~ 608 (985)
.+.|+|+|++|+ ++|.+|.+||||++++. + .+++|+++++|+||+|||+|.|.+... ....|.|+|||+|.
T Consensus 25 ~~~L~V~v~~a~---~~d~~g~sDPyv~v~l~~~~~~~~~kT~v~~~tlnP~wnE~f~f~v~~~~l~~~~L~~~V~d~d~ 101 (138)
T 1wfm_A 25 KAELFVTRLEAV---TSNHDGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPLAEEELPTATLTLTLRTCDR 101 (138)
T ss_dssp TTEEEEEEEEEE---CCCCSSCCCEEEEEEEEETTEEEEEECCCCCCCSSEECSSCEEEECCTTSSTTCEEEEEEEECCS
T ss_pred CCEEEEEEEEEE---cCCCCCCcceEEEEEEEcCCCcccEecccCcCCCCCcCCceEEEEecHHHcCCCEEEEEEEECCC
Confidence 468999999999 36789999999999993 2 368999999999999999999996433 24689999999998
Q ss_pred CCCCCCccceEEEEeeccccCcccceEEEcccc
Q 001987 609 PFDQATSLGHAEINFLKHTSTELADMWVSLEGK 641 (985)
Q Consensus 609 ~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~~~ 641 (985)
+++|++||++.|+|.++..+...+.|++|.+.
T Consensus 102 -~~~dd~lG~~~i~l~~l~~~~~~~~W~~L~~~ 133 (138)
T 1wfm_A 102 -FSRHSVAGELRLGLDGTSVPLGAAQWGELKTS 133 (138)
T ss_dssp -SCTTSCSEEEEEESSSSSSCTTCCEEEECCCC
T ss_pred -CCCCcEEEEEEEEcccccCcccccceeeCcCC
Confidence 89999999999999999877788999999874
|
| >1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.71 E-value=3e-17 Score=159.02 Aligned_cols=118 Identities=25% Similarity=0.507 Sum_probs=102.1
Q ss_pred CCcEEEEEEEEeecCC------CCCcEEEEEECCeEEeecCcc-CCCCCeEeeEEEEEEecCCCceEEEEEEecCCCCCC
Q 001987 2 VSTRLYVYVLQGQDLL------AKDSYVKVQIGKHKSKSRILK-NNSNPVWNEEFVFRVHNIDDEELVVSVFQHNDDSGL 74 (985)
Q Consensus 2 ~~~~L~V~V~~Ar~L~------~~DPyv~v~l~~~~~kT~v~~-~t~nP~wnE~f~f~v~~~~~~~L~~~V~D~d~~~~~ 74 (985)
..+.|+|+|++|++|+ .+||||+|++++++.+|++++ +++||.|||+|.|.+.. ....|.|+|||++ +
T Consensus 8 ~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~~~~~~~~nP~Wne~f~f~v~~-~~~~l~~~V~d~~---~- 82 (136)
T 1wfj_A 8 PHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSE-GTTELKAKIFDKD---V- 82 (136)
T ss_dssp CEEEEEEEEEEEEECSSCCSSCSSCCCEEEESSSCEEECCCCTTCCSSCEEEEEEEEEEES-SCCEEEEEECCSS---S-
T ss_pred CcEEEEEEEEeccCCCCcccCCCcCceEEEEECCccceeEeccCCCCCCccCcEEEEEECC-CCCEEEEEEEECC---C-
Confidence 3578999999999999 589999999999999999998 89999999999999954 7789999999999 4
Q ss_pred CCCCCCeeEEEEEeCccccccCCCCCCCeEEEeecCCCCCCCCccccEEEEEEEEEecC
Q 001987 75 FGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTNKDCGKILLTISLNGKG 133 (985)
Q Consensus 75 ~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~~G~I~lsl~~~~~~ 133 (985)
.++|++||++.++|.++.... .....||+|. +. ....|+|+|+++|.+..
T Consensus 83 -~~~d~~lG~~~i~l~~l~~~~--~~~~~w~~L~-~~-----~~~~G~i~l~l~~~p~~ 132 (136)
T 1wfj_A 83 -GTEDDAVGEATIPLEPVFVEG--SIPPTAYNVV-KD-----EEYKGEIWVALSFKPSG 132 (136)
T ss_dssp -CTTTCCSEEEEEESHHHHHHS--EEEEEEEEEE-ET-----TEEEEEEEEEEEEEECC
T ss_pred -CCCCceEEEEEEEHHHhccCC--CCCcEEEEee-cC-----CccCEEEEEEEEEEeCC
Confidence 578999999999999995432 2356899998 21 45789999999999864
|
| >1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.71 E-value=1.1e-17 Score=163.05 Aligned_cols=106 Identities=19% Similarity=0.355 Sum_probs=93.2
Q ss_pred CeEEEEEEEEeecCCCCCCCCCCCcEEEEEE-----CCEEEEeeeccCCCCCeEeEEEEEEeec---CCCCEEEEEEEec
Q 001987 535 GWVLTVALVEGVNLASSEMTGLSDPYVVFTC-----NGKTRTSSVQLQTCDPQWHDILEFDAME---EPPSVLDVEVFDF 606 (985)
Q Consensus 535 ~g~L~V~v~~a~~L~~~d~~g~~DPyv~v~~-----~~~~~kT~~~~~tlnP~Wne~f~f~v~~---~~~~~L~v~V~D~ 606 (985)
.+.|.|+|++|+||+.+|.+|.+||||++++ +.++++|+++++|+||+|||+|.|.+.. .....|.|+|||+
T Consensus 20 ~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~V~d~ 99 (141)
T 1v27_A 20 GHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWDQ 99 (141)
T ss_dssp TTEEEEEEEEEESCCCCSSSCCCCEEEECCCSSCCSSSSCCBCCCCSSCSSCCCCCCCEECSCCTTGGGTCEEEEEEEEB
T ss_pred CCEEEEEEEEccCCCCcCCCCCCCCEEEEEEecCCCCCcceeCccccCCCCCccccEEEEccCCHHHhcCCEEEEEEEEC
Confidence 4689999999999999999999999999999 4678999999999999999999999432 2357999999999
Q ss_pred CCCCCC--CCccceEEEEeeccccCcccceEEEccccc
Q 001987 607 DGPFDQ--ATSLGHAEINFLKHTSTELADMWVSLEGKL 642 (985)
Q Consensus 607 d~~~~~--dd~lG~~~i~l~~l~~~~~~~~w~~L~~~~ 642 (985)
|. +++ |++||++.|+|.++.... .+.|++|.+..
T Consensus 100 d~-~~~~~~~~lG~~~i~l~~l~~~~-~~~W~~L~~~~ 135 (141)
T 1v27_A 100 AR-VREEESEFLGEILIELETALLDD-EPHWYKLQTHD 135 (141)
T ss_dssp CS-SSSCCBCCCEEEEEEGGGCCCSS-EEEEEECBCCS
T ss_pred CC-CcCCCCceEEEEEEEccccCCCC-CCceEECcccc
Confidence 98 776 999999999999986654 78999998743
|
| >1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.71 E-value=2.4e-17 Score=162.46 Aligned_cols=104 Identities=24% Similarity=0.400 Sum_probs=92.9
Q ss_pred CeEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CEEEEeeeccCCCCCeEeEEEEEEeecC-CCCEEEEEEEecCC
Q 001987 535 GWVLTVALVEGVNLASSEMTGLSDPYVVFTCN-----GKTRTSSVQLQTCDPQWHDILEFDAMEE-PPSVLDVEVFDFDG 608 (985)
Q Consensus 535 ~g~L~V~v~~a~~L~~~d~~g~~DPyv~v~~~-----~~~~kT~~~~~tlnP~Wne~f~f~v~~~-~~~~L~v~V~D~d~ 608 (985)
.+.|+|+|++|+||++.|..|.+||||++++. ..+++|+++++++||+|||+|.|.+... ....|.|+|||+|.
T Consensus 30 ~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~L~i~V~d~d~ 109 (149)
T 1a25_A 30 REVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESDKDRRLSVEIWDWDL 109 (149)
T ss_dssp SSEEEEEEEEEESCCCCSTTSCCCEEEEEEEESCTTCSSCEECCCCSSCSSCEEEEEEEEECCSGGGGCEEEEEEEECCS
T ss_pred CCEEEEEEEEeeCCCCCCCCCCcCeEEEEEEECCCCCcceEecceeCCCCCCcCCcEEEEEeccccCCCEEEEEEEECCC
Confidence 35899999999999999999999999999996 4689999999999999999999996432 34689999999998
Q ss_pred CCCCCCccceEEEEeeccccCcccceEEEccc
Q 001987 609 PFDQATSLGHAEINFLKHTSTELADMWVSLEG 640 (985)
Q Consensus 609 ~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~~ 640 (985)
+++|++||++.|+|.++..+ ..+.|++|.+
T Consensus 110 -~~~~~~iG~~~i~l~~l~~~-~~~~W~~L~~ 139 (149)
T 1a25_A 110 -TSRNDFMGSLSFGISELQKA-GVDGWFKLLS 139 (149)
T ss_dssp -SSCCEEEEEEEEEHHHHTTC-CEEEEEECBC
T ss_pred -CCCCCEEEEEEEEHHHhCcC-ccCCeEEccC
Confidence 78999999999999998765 4788999986
|
| >2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.71 E-value=2.4e-17 Score=166.34 Aligned_cols=106 Identities=22% Similarity=0.295 Sum_probs=93.9
Q ss_pred CeEEEEEEEEeecCCCCCC-CCCCCcEEEEEECC-----EEEEeeeccCCCCCeEeEEEEEEeecCCCCEEEEEEE-ecC
Q 001987 535 GWVLTVALVEGVNLASSEM-TGLSDPYVVFTCNG-----KTRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVF-DFD 607 (985)
Q Consensus 535 ~g~L~V~v~~a~~L~~~d~-~g~~DPyv~v~~~~-----~~~kT~~~~~tlnP~Wne~f~f~v~~~~~~~L~v~V~-D~d 607 (985)
.+.|.|+|++|+||+++|. +|.+||||++++.. .+++|+++++|+||+|||+|.|.+ ......|.|+|| |+|
T Consensus 29 ~~~L~V~v~~a~~L~~~d~~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v-~~~~~~L~~~V~~d~d 107 (171)
T 2q3x_A 29 KGQLEVEVIRARSLTQKPGSKSTPAPYVKVYLLENGACIAKKKTRIARKTLDPLYQQSLVFDE-SPQGKVLQVIVWGDYG 107 (171)
T ss_dssp TTEEEEEEEEEESCCCCC---CCCEEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEECSS-CCTTEEEEEEEEEECS
T ss_pred CCEEEEEEEEeeCCCCCCcCCCCCCceEEEEEECCCccccceeCccCCCCCCCCCCcEEEEEe-cCCCCEEEEEEEEcCC
Confidence 4689999999999999995 79999999999853 378999999999999999999995 455679999999 999
Q ss_pred CCCCCCCccceEEEEeeccccCcccceEEEccccc
Q 001987 608 GPFDQATSLGHAEINFLKHTSTELADMWVSLEGKL 642 (985)
Q Consensus 608 ~~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~~~~ 642 (985)
. +++|++||++.|+|.++..+...+.|++|.+..
T Consensus 108 ~-~~~d~~iG~~~i~l~~l~~~~~~~~W~~L~~~~ 141 (171)
T 2q3x_A 108 R-MDHKCFMGVAQILLEELDLSSMVIGWYKLFPPS 141 (171)
T ss_dssp T-TCSSEEEEEEEECGGGSCTTSCEEEEEECBCGG
T ss_pred C-CCCCCEEEEEEEEHHHcccCCCcceeEECCCcc
Confidence 8 799999999999999998888889999998743
|
| >1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.71 E-value=8.5e-17 Score=153.63 Aligned_cols=111 Identities=23% Similarity=0.377 Sum_probs=94.3
Q ss_pred CCcEEEEEEEEeecCC---------CCCcEEEEEECC---eEEeecCccCCCCCeEeeEEEEEEecCCCceEEEEEEecC
Q 001987 2 VSTRLYVYVLQGQDLL---------AKDSYVKVQIGK---HKSKSRILKNNSNPVWNEEFVFRVHNIDDEELVVSVFQHN 69 (985)
Q Consensus 2 ~~~~L~V~V~~Ar~L~---------~~DPyv~v~l~~---~~~kT~v~~~t~nP~wnE~f~f~v~~~~~~~L~~~V~D~d 69 (985)
+++.|.|+|++|+||+ .+||||++++++ .++||+++++++||.|||+|.|.+..+....|.|+|||+|
T Consensus 1 S~~~L~v~v~~a~~L~~~~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~l~i~V~d~d 80 (126)
T 1rlw_A 1 SSHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDAN 80 (126)
T ss_dssp CCEEEEEEEEEEESCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTTSCCEEEEEEEECC
T ss_pred CCcEEEEEEEeeeCCCCCCccccCCCCCCEEEEEEccCCCceEEccccCCCCCCcccceEEEEecCCCCCEEEEEEEECC
Confidence 4689999999999998 479999999985 6799999999999999999999996667889999999999
Q ss_pred CCCCCCCCCCCeeEEEEEeCccccccCCCCCCCeEEEeecCCCCCCCCccccEEEEEEEE
Q 001987 70 DDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTNKDCGKILLTISL 129 (985)
Q Consensus 70 ~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~~G~I~lsl~~ 129 (985)
. . ++++||++.++|.++..+ .....|++|. ....|+|+|+++.
T Consensus 81 ---~--~-~~~~iG~~~i~l~~l~~~---~~~~~~~~L~--------~~~~g~i~~~le~ 123 (126)
T 1rlw_A 81 ---Y--V-MDETLGTATFTVSSMKVG---EKKEVPFIFN--------QVTEMVLEMSLEV 123 (126)
T ss_dssp ---S--S-CCEEEEEEEEEGGGSCTT---CEEEEEEEET--------TTEEEEEEEEEEC
T ss_pred ---C--C-CCceeEEEEEEHHHccCC---CcEEEEEEcC--------CCceEEEEEEEEe
Confidence 4 3 589999999999999754 3457899998 2345777777654
|
| >2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A | Back alignment and structure |
|---|
Probab=99.71 E-value=2.7e-17 Score=160.70 Aligned_cols=105 Identities=22% Similarity=0.385 Sum_probs=94.3
Q ss_pred CeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----EEEEeeeccCCCCCeEeEEEEEE-eecCC--CCEEEEEEEec
Q 001987 535 GWVLTVALVEGVNLASSEMTGLSDPYVVFTCNG-----KTRTSSVQLQTCDPQWHDILEFD-AMEEP--PSVLDVEVFDF 606 (985)
Q Consensus 535 ~g~L~V~v~~a~~L~~~d~~g~~DPyv~v~~~~-----~~~kT~~~~~tlnP~Wne~f~f~-v~~~~--~~~L~v~V~D~ 606 (985)
.+.|.|+|++|++|++.|.+|.+||||++++++ .+++|+++++++||+|||+|.|. +.... ...|.|+|||+
T Consensus 28 ~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~V~d~ 107 (142)
T 2chd_A 28 NSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQYHGITEEDMQRKTLRISVCDE 107 (142)
T ss_dssp GTEEEEEEEEEESCCCCCTTSCCCEEEEEEEESCCSGGGEEECCCCCSCSSCEEEEEEEEESCCHHHHHHCEEEEEEEEE
T ss_pred CCEEEEEEEEecCCCCCCCCCCCCCEEEEEEEcCCCCcceeeCCcCCCCCCCcCcCEEEEcccCHHHccCCEEEEEEEEC
Confidence 458999999999999999999999999999974 78999999999999999999998 42211 36899999999
Q ss_pred CCCCCCCCccceEEEEeeccccCcccceEEEccc
Q 001987 607 DGPFDQATSLGHAEINFLKHTSTELADMWVSLEG 640 (985)
Q Consensus 607 d~~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~~ 640 (985)
|. +++|++||++.|+|.++..+.....|++|+.
T Consensus 108 d~-~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~ 140 (142)
T 2chd_A 108 DK-FGHNEFIGETRFSLKKLKANQRKNFNICLER 140 (142)
T ss_dssp CT-TSCEEEEEEEEEEGGGCCTTCCEEEEEECBC
T ss_pred CC-CCCCcEEEEEEEEHHHcCCCCccEEEEeccc
Confidence 98 7899999999999999998888999999974
|
| >2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.70 E-value=3.3e-17 Score=160.08 Aligned_cols=107 Identities=23% Similarity=0.279 Sum_probs=92.5
Q ss_pred CeEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CEEEEeeeccCCCCCeEeEEEEEEeecC--CCCEEEEEEEecC
Q 001987 535 GWVLTVALVEGVNLASSEMTGLSDPYVVFTCN-----GKTRTSSVQLQTCDPQWHDILEFDAMEE--PPSVLDVEVFDFD 607 (985)
Q Consensus 535 ~g~L~V~v~~a~~L~~~d~~g~~DPyv~v~~~-----~~~~kT~~~~~tlnP~Wne~f~f~v~~~--~~~~L~v~V~D~d 607 (985)
.+.|.|+|++|+||+++|.+| +||||++++. ..+++|+++++|+||+|||+|.|.+... ....|.|+|||+|
T Consensus 23 ~~~L~v~v~~a~~L~~~d~~g-~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d 101 (142)
T 2dmg_A 23 RNKLIVVVHACRNLIAFSEDG-SDPYVRMYLLPDKRRSGRRKTHVSKKTLNPVFDQSFDFSVSLPEVQRRTLDVAVKNSG 101 (142)
T ss_dssp TTEEEEEEEEEECCCCSSTTC-CCEEEEEEEESCCCSSSCEECCCCCSCSSCEEEEEEEECCCHHHHHHCEEEEEEEECC
T ss_pred CCEEEEEEEEeECCCCCCCCC-CCeeEEEEEEcCCCCCCcccCCccCCCCCCCcCceEEEEecHHHhCcCEEEEEEEECC
Confidence 458999999999999999999 9999999993 2688999999999999999999996322 2458999999999
Q ss_pred CCCCC--CCccceEEEEeeccccCcccceEEEcccccc
Q 001987 608 GPFDQ--ATSLGHAEINFLKHTSTELADMWVSLEGKLA 643 (985)
Q Consensus 608 ~~~~~--dd~lG~~~i~l~~l~~~~~~~~w~~L~~~~~ 643 (985)
. +++ +++||++.|+|..+..+...+.|++|.+..+
T Consensus 102 ~-~~~~~~~~iG~~~i~l~~~~~~~~~~~W~~L~~~~~ 138 (142)
T 2dmg_A 102 G-FLSKDKGLLGKVLVALASEELAKGWTQWYDLTEDSG 138 (142)
T ss_dssp C-SSCCSCCCCEEEEEECCCSTTTTCBCCBCCCBCSCS
T ss_pred C-ccccCCcEEEEEEEecccccccccccceeeccCCCC
Confidence 7 653 5799999999999887778889999997544
|
| >2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.70 E-value=9.1e-17 Score=162.03 Aligned_cols=120 Identities=17% Similarity=0.249 Sum_probs=101.3
Q ss_pred CcEEEEEEEEeecCC------CCCcEEEEEECCeEEeecCccCCCCCeEeeEEEEEEecCCCceEEEEEEecCCCCCCCC
Q 001987 3 STRLYVYVLQGQDLL------AKDSYVKVQIGKHKSKSRILKNNSNPVWNEEFVFRVHNIDDEELVVSVFQHNDDSGLFG 76 (985)
Q Consensus 3 ~~~L~V~V~~Ar~L~------~~DPyv~v~l~~~~~kT~v~~~t~nP~wnE~f~f~v~~~~~~~L~~~V~D~d~~~~~~~ 76 (985)
.++|+|+|++|++|+ .+||||+|+++++++||+++++|+||+|||+|.|.+. ....|.|+|||+| + .
T Consensus 35 ~~~L~V~V~~A~~L~~~~~~~~sDPYv~v~~~~~~~kT~v~~~tlnP~Wne~f~f~v~--~~~~L~~~V~D~d---~--~ 107 (173)
T 2nq3_A 35 KSQLQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTEKCNNTNSPKWKQPLTVIVT--PVSKLHFRVWSHQ---T--L 107 (173)
T ss_dssp CEEEEEEEEEEEECCCC--CCCCCEEEEEEETTEEEECCCCSSCSSCEEEEEEEEEEC--TTCEEEEEEEECC---S--S
T ss_pred ceEEEEEEEEeECCCCcccCCCCCeEEEEEECCEEeEccccCCCCCCeECCEEEEEeC--CCCEEEEEEEECC---C--C
Confidence 468999999999998 6899999999999999999999999999999999983 4889999999999 4 5
Q ss_pred CCCCeeEEEEEeCccccccCCCCC--CCeEEEeecCCCCCCCCccccEEEEEEEEEec
Q 001987 77 SSGELMGRVRVPVSSIAAEDNHML--PPTWFSLETPKTRKFTNKDCGKILLTISLNGK 132 (985)
Q Consensus 77 ~~d~~lG~~~i~L~~l~~~~~~~~--~~~W~~L~~~~~~~~~~~~~G~I~lsl~~~~~ 132 (985)
++++|||++.++|.++........ ...|++|... .+ .....|+|.|.+.|.+.
T Consensus 108 ~~dd~lG~~~i~l~~l~~~~~~~~~~~~~~~~L~~~-~~--~~~~~G~L~v~l~~l~~ 162 (173)
T 2nq3_A 108 KSDVLLGTAALDIYETLKSNNMKLEEVVVTLQLGGD-KE--PTETIGDLSICLDGLQL 162 (173)
T ss_dssp SCCEEEEEEEEEHHHHHHHTTTEESSEEEEEEEEES-SC--TTSEEEEEEEEEESEEC
T ss_pred CCCceEEEEEEEHHHhcccCCCCcceeEEEEECccC-CC--CCcccEEEEEEEeeeec
Confidence 789999999999999876533222 2579999844 22 24578999999999754
|
| >1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.69 E-value=1.1e-16 Score=155.54 Aligned_cols=105 Identities=20% Similarity=0.231 Sum_probs=91.1
Q ss_pred CeEEEEEEEEeecCCCCCCC-CCCCcEEEEEEC---CEEEEeeeccCCCCCeEeEEEEEE-eecC--CCCEEEEEEEecC
Q 001987 535 GWVLTVALVEGVNLASSEMT-GLSDPYVVFTCN---GKTRTSSVQLQTCDPQWHDILEFD-AMEE--PPSVLDVEVFDFD 607 (985)
Q Consensus 535 ~g~L~V~v~~a~~L~~~d~~-g~~DPyv~v~~~---~~~~kT~~~~~tlnP~Wne~f~f~-v~~~--~~~~L~v~V~D~d 607 (985)
.+.|.|+|++|+||+++|.+ |.+||||++++. .++++|+++++++||+|||+|.|. +... ....|.|+|||+|
T Consensus 21 ~~~L~v~v~~a~~L~~~d~~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~v~~~~~~~~~l~i~V~d~d 100 (138)
T 1ugk_A 21 RKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYGIPYTQIQELALHFTILSFD 100 (138)
T ss_dssp GTEEEEEEEEEESCCCCBTTTTBCEEEEEEEEETTTCSEEECCCCSSCSSCEEEEEEEEECCCSTTGGGCEEEEEEEEEC
T ss_pred CCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEecCCCceEecCcCcCCCCCcEeeEEEEcCcCHHHhccCEEEEEEEECC
Confidence 45899999999999999985 999999999995 478999999999999999999996 4322 2469999999999
Q ss_pred CCCCCCCccceEEEEeeccccCcc-cceEEEccc
Q 001987 608 GPFDQATSLGHAEINFLKHTSTEL-ADMWVSLEG 640 (985)
Q Consensus 608 ~~~~~dd~lG~~~i~l~~l~~~~~-~~~w~~L~~ 640 (985)
. +++|++||++.|+|.++..+.. ...|++|..
T Consensus 101 ~-~~~~~~lG~~~i~l~~l~~~~~~~~~~~~l~~ 133 (138)
T 1ugk_A 101 R-FSRDDIIGEVLIPLSGIELSEGKMLMNREIIS 133 (138)
T ss_dssp S-SCCCCCCEEEEEECTTCCCTTCCEEEEEECBS
T ss_pred C-CCCCcEEEEEEEehhHccCCCCcchhhhhhhc
Confidence 8 7999999999999999877543 466899986
|
| >3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} SCOP: b.7.1.0 | Back alignment and structure |
|---|
Probab=99.69 E-value=7.2e-17 Score=159.78 Aligned_cols=106 Identities=22% Similarity=0.344 Sum_probs=92.3
Q ss_pred CCeEEEEEEEEeecCCCCCCCCCCCcEEEEEE-----CCEEEEeeeccCCCCCeEeEEEEEEee-cCCCCEEEEEEEecC
Q 001987 534 DGWVLTVALVEGVNLASSEMTGLSDPYVVFTC-----NGKTRTSSVQLQTCDPQWHDILEFDAM-EEPPSVLDVEVFDFD 607 (985)
Q Consensus 534 ~~g~L~V~v~~a~~L~~~d~~g~~DPyv~v~~-----~~~~~kT~~~~~tlnP~Wne~f~f~v~-~~~~~~L~v~V~D~d 607 (985)
..+.|.|+|++|+||++.| +|.+||||++++ ..++++|+++++|+||+|||+|.|.+. ......|.|+|||+|
T Consensus 25 ~~~~L~V~v~~a~~L~~~d-~g~~Dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~L~i~V~d~d 103 (153)
T 3fbk_A 25 QDRVLLLHIIEGKGLISKQ-PGTCDPYVKISLIPEDSRLRHQKTQTVPDCRDPAFHEHFFFPVQEEDDQKRLLVTVWNRA 103 (153)
T ss_dssp SSSEEEEEEEEEESCCCCS-SSCCCEEEEEEEESCSCCTTCEECCCCTTCSSCEEEEEEEEECCGGGTTSEEEEEEEECC
T ss_pred CCCEEEEEEEEeeCCCCCC-CCCCCEEEEEEEEcCCCCccEEeccccCCCCCCccccEEEEecccHHhCCEEEEEEEeCC
Confidence 3569999999999999999 799999999999 346799999999999999999999963 344467999999999
Q ss_pred CCCCC-CCccceEEEEeecccc-CcccceEEEcccc
Q 001987 608 GPFDQ-ATSLGHAEINFLKHTS-TELADMWVSLEGK 641 (985)
Q Consensus 608 ~~~~~-dd~lG~~~i~l~~l~~-~~~~~~w~~L~~~ 641 (985)
. +++ |++||++.|+|.++.. +.....|++|.+.
T Consensus 104 ~-~~~~d~~lG~~~i~l~~l~~~~~~~~~W~~L~~~ 138 (153)
T 3fbk_A 104 S-QSRQSGLIGCMSFGVKSLLTPDKEISGWYYLLGE 138 (153)
T ss_dssp S-SGGGCEEEEEEEEEHHHHTC--CCEEEEEECBCT
T ss_pred C-CCCCCcEEEEEEEEHHHhcCCCCccccEEECCCh
Confidence 8 676 9999999999999874 6778899999873
|
| >3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A | Back alignment and structure |
|---|
Probab=99.69 E-value=3e-16 Score=151.23 Aligned_cols=117 Identities=19% Similarity=0.330 Sum_probs=94.6
Q ss_pred CcEEEEEEEEeecCC------CCCcEEEEEECC--eEEeecCccCCCCCeEeeEEEEEEecCCCceEEEEEEecCCCCCC
Q 001987 3 STRLYVYVLQGQDLL------AKDSYVKVQIGK--HKSKSRILKNNSNPVWNEEFVFRVHNIDDEELVVSVFQHNDDSGL 74 (985)
Q Consensus 3 ~~~L~V~V~~Ar~L~------~~DPyv~v~l~~--~~~kT~v~~~t~nP~wnE~f~f~v~~~~~~~L~~~V~D~d~~~~~ 74 (985)
..+|+|+|++|++|+ .+||||++++.+ +.++|+++++|+||.|||+|.|.+... ..|.|+|||+| .
T Consensus 4 ~~~L~V~v~~a~~L~~~d~~g~sDpyv~v~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~--~~l~~~v~d~d---~- 77 (132)
T 3pyc_A 4 FIKIRLTVLCAKNLAKKDFFRLPDPFAKIVVDGSGQCHSTDTVKNTLDPKWNQHYDLYVGKT--DSITISVWNHK---K- 77 (132)
T ss_dssp EEEEEEEEEEEESCCCCSTTCCCCEEEEEEETTTCCEEECCCCSSCSSCEEEEEEEEEEETT--CCEEEEEEEGG---G-
T ss_pred eEEEEEEEEEeECCCCCCCCCCcCeEEEEEECCCCceEECCccCCCCCCCccCEEEEEeCCC--CEEEEEEEECC---C-
Confidence 468999999999998 689999999975 779999999999999999999998543 34999999999 4
Q ss_pred CCCC---CCeeEEEEEeCccccccCCCCCCCeEEEeecCCCCCCCCccccEEEEEEEE
Q 001987 75 FGSS---GELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTNKDCGKILLTISL 129 (985)
Q Consensus 75 ~~~~---d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~~G~I~lsl~~ 129 (985)
.++ |+|||++.+|+.++..... ....|++|.. +.+.......|+|.|++++
T Consensus 78 -~~~~~~d~~lG~~~i~l~~l~~~~~--~~~~~~~L~~-~~~~~~~~~~G~i~v~l~~ 131 (132)
T 3pyc_A 78 -IHKKQGAGFLGCVRLLSNAISRLKD--TGYQRLDLCK-LNPSDTDAVRGQIVVSLQT 131 (132)
T ss_dssp -TTSSTTTTEEEEEEECHHHHHHHTT--SCCEEEECBC-SSTTCCCCCCSEEEEEEEE
T ss_pred -CCCCCCCCceEEEEEeHHHhhcccc--cCcEEEeeee-cCCCCCCceeEEEEEEEEc
Confidence 444 8999999999998843321 2468999984 4322224679999999875
|
| >2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.69 E-value=3.1e-17 Score=161.22 Aligned_cols=108 Identities=20% Similarity=0.293 Sum_probs=92.9
Q ss_pred CeEEEEEEEEeecCCCC-CCC------CCCCcEEEEEEC---CEEEEeeeccCCCCCeEeEEEEEEeecC--CCCEEEEE
Q 001987 535 GWVLTVALVEGVNLASS-EMT------GLSDPYVVFTCN---GKTRTSSVQLQTCDPQWHDILEFDAMEE--PPSVLDVE 602 (985)
Q Consensus 535 ~g~L~V~v~~a~~L~~~-d~~------g~~DPyv~v~~~---~~~~kT~~~~~tlnP~Wne~f~f~v~~~--~~~~L~v~ 602 (985)
.+.|.|+|++|+||+.+ |.+ |.+||||++++. .++++|+++++++||+|||+|.|.+... ....|.|+
T Consensus 25 ~~~L~V~v~~a~~L~~~~d~~g~~~~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~~~ 104 (147)
T 2enp_A 25 HNHLTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICLLPDQKNSKQTGVKRKTQKPVFEERYTFEIPFLEAQRRTLLLT 104 (147)
T ss_dssp TTEEEEEEEEEECCCCSCSSCCSSCTTCCCCCEEEEEEETCCSSCEECCCCCSCSSCCCCBCCEECCCHHHHHHSEEEEE
T ss_pred CCEEEEEEEEEeCCCCccccccccccCCCCCcEEEEEEEeCCCcceEeecccCCCCCeEeeeEEEEeChHHhccCEEEEE
Confidence 46899999999999984 443 589999999996 4688999999999999999999996432 24589999
Q ss_pred EEecCCCCCCCCccceEEEEeeccccCcccceEEEcccccc
Q 001987 603 VFDFDGPFDQATSLGHAEINFLKHTSTELADMWVSLEGKLA 643 (985)
Q Consensus 603 V~D~d~~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~~~~~ 643 (985)
|||+|. +++|++||++.|+|.++........|++|.++..
T Consensus 105 V~d~d~-~~~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~ 144 (147)
T 2enp_A 105 VVDFDK-FSRHCVIGKVSVPLCEVDLVKGGHWWKALIPSGP 144 (147)
T ss_dssp EECCST-TCCSCCCEEEEEETTTSCTTTCCCEEECCBCCCC
T ss_pred EEECCC-CcCCcEEEEEEEechhcCCCCCccEEEEeecCCC
Confidence 999998 7999999999999999987777789999997543
|
| >2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A | Back alignment and structure |
|---|
Probab=99.68 E-value=1.6e-16 Score=159.64 Aligned_cols=91 Identities=21% Similarity=0.382 Sum_probs=82.4
Q ss_pred CeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----EEEEeeeccCCCCCeEeEEEEEEeecC--CCCEEEEEEEecC
Q 001987 535 GWVLTVALVEGVNLASSEMTGLSDPYVVFTCNG-----KTRTSSVQLQTCDPQWHDILEFDAMEE--PPSVLDVEVFDFD 607 (985)
Q Consensus 535 ~g~L~V~v~~a~~L~~~d~~g~~DPyv~v~~~~-----~~~kT~~~~~tlnP~Wne~f~f~v~~~--~~~~L~v~V~D~d 607 (985)
.+.|.|+|++|+||+.+|.+|.+||||++++++ .+++|+++++|+||+|||+|.|.+... ....|.|+|||+|
T Consensus 36 ~~~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d 115 (166)
T 2cm5_A 36 QGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKHSDLAKKSLDISVWDYD 115 (166)
T ss_dssp TTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETC---CCEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEEEECC
T ss_pred CCEEEEEEEEeECCCCccCCCCCCcEEEEEEECCCCccceEeCCcccCCCCCcccceEEEEcchHhcCCCEEEEEEEECC
Confidence 468999999999999999999999999999975 689999999999999999999996432 2569999999999
Q ss_pred CCCCCCCccceEEEEeecc
Q 001987 608 GPFDQATSLGHAEINFLKH 626 (985)
Q Consensus 608 ~~~~~dd~lG~~~i~l~~l 626 (985)
. +++|++||++.|+|..+
T Consensus 116 ~-~~~~~~iG~~~i~l~~~ 133 (166)
T 2cm5_A 116 I-GKSNDYIGGCQLGISAK 133 (166)
T ss_dssp S-SSCCEEEEEEEEETTCC
T ss_pred C-CCCCcEEEeEEEecccC
Confidence 8 78999999999999875
|
| >1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=2e-16 Score=157.64 Aligned_cols=105 Identities=25% Similarity=0.451 Sum_probs=90.1
Q ss_pred CeEEEEEEEEeecCCCCCCCCCCCcEEEEEEC--C---EEEEeeeccCCCCCeEeEEEEEEeecC--CCCEEEEEEEecC
Q 001987 535 GWVLTVALVEGVNLASSEMTGLSDPYVVFTCN--G---KTRTSSVQLQTCDPQWHDILEFDAMEE--PPSVLDVEVFDFD 607 (985)
Q Consensus 535 ~g~L~V~v~~a~~L~~~d~~g~~DPyv~v~~~--~---~~~kT~~~~~tlnP~Wne~f~f~v~~~--~~~~L~v~V~D~d 607 (985)
.+.|.|+|++|+||+..|.+|.+||||+++++ + .+++|+++++++||+|||+|.|.+... ....|.|+|||+|
T Consensus 24 ~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~d 103 (159)
T 1tjx_A 24 AGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDYD 103 (159)
T ss_dssp TTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEEEECC
T ss_pred CCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCceeceeeCceecCCCCCcccceEEEEcCHHHhCCcEEEEEEEECC
Confidence 46899999999999999999999999999995 2 478999999999999999999996432 2458999999999
Q ss_pred CCCCCCCccceEEEEeecc------------ccCcccceEEEccc
Q 001987 608 GPFDQATSLGHAEINFLKH------------TSTELADMWVSLEG 640 (985)
Q Consensus 608 ~~~~~dd~lG~~~i~l~~l------------~~~~~~~~w~~L~~ 640 (985)
. +++|++||++.|++..+ ..+.....|++|.+
T Consensus 104 ~-~~~~~~iG~~~i~l~~~~~~~~~w~~l~~~~~~~~~~W~~L~~ 147 (159)
T 1tjx_A 104 K-IGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHTLQV 147 (159)
T ss_dssp S-SSCCEEEEEEEEETTCCHHHHHHHHHHHHSTTCCEEEEEECBC
T ss_pred C-CCCCceEEEEEECCCCCCcHHHHHHHHHHCCCCeeeeEEECcC
Confidence 8 79999999999999853 23345678999976
|
| >3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.67 E-value=2e-16 Score=153.49 Aligned_cols=102 Identities=18% Similarity=0.337 Sum_probs=85.9
Q ss_pred CeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----EEEEeeeccCCCCCeEeEEEEEEeecCC--CCEEEEEEEecC
Q 001987 535 GWVLTVALVEGVNLASSEMTGLSDPYVVFTCNG-----KTRTSSVQLQTCDPQWHDILEFDAMEEP--PSVLDVEVFDFD 607 (985)
Q Consensus 535 ~g~L~V~v~~a~~L~~~d~~g~~DPyv~v~~~~-----~~~kT~~~~~tlnP~Wne~f~f~v~~~~--~~~L~v~V~D~d 607 (985)
.+.|.|+|++|+||+..|.+|.+||||++++++ .+++|+++++++||+|||+|.|.+.... ...|.|+|||+|
T Consensus 15 ~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~l~~~~l~~~V~d~~ 94 (138)
T 3n5a_A 15 ANSIIVNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKKRNLNPIFNESFAFDIPTEKLRETTIIITVMDKD 94 (138)
T ss_dssp TTEEEEEEEEEESCCCCBTTTBCCEEEEEEEEETTEEEEEEECCCCSSCSSCEEEEEEEEECCGGGGGGEEEEEEEEECC
T ss_pred CCeEEEEEEEeeCCCCcCCCCCcCeEEEEEEEeCCCccceEeCccccCCCCCcCcceEEEECChhhcCceEEEEEEEECC
Confidence 468999999999999999999999999999963 5789999999999999999999964332 358999999999
Q ss_pred CCCCCCCccceEEEEeeccccCcccceEEEcc
Q 001987 608 GPFDQATSLGHAEINFLKHTSTELADMWVSLE 639 (985)
Q Consensus 608 ~~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~ 639 (985)
. +++|++||++.|+|.++. .....|++|.
T Consensus 95 ~-~~~~~~lG~~~i~l~~~~--~~~~~W~~l~ 123 (138)
T 3n5a_A 95 K-LSRNDVIGKIYLSWKSGP--GEVKHWKDMI 123 (138)
T ss_dssp S-SSCCEEEEEEEESSSSCH--HHHHHHHHHH
T ss_pred C-CCCCcEEEEEEEccccCC--hHHHHHHHHH
Confidence 8 789999999999998743 2234455554
|
| >2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.66 E-value=6.7e-16 Score=169.10 Aligned_cols=123 Identities=20% Similarity=0.335 Sum_probs=106.5
Q ss_pred CeEEEEEEEEeecCCCCCCCCCCCcEEEEEEC---CEEEEeeeccCCCCCeEeEEEEEEeecC--CCCEEEEEEEecCCC
Q 001987 535 GWVLTVALVEGVNLASSEMTGLSDPYVVFTCN---GKTRTSSVQLQTCDPQWHDILEFDAMEE--PPSVLDVEVFDFDGP 609 (985)
Q Consensus 535 ~g~L~V~v~~a~~L~~~d~~g~~DPyv~v~~~---~~~~kT~~~~~tlnP~Wne~f~f~v~~~--~~~~L~v~V~D~d~~ 609 (985)
.+.|+|+|++|+||+++|.+|.+||||+++++ ++.++|+++++++||+|||+|.|.+... ....|.|+|||+|.
T Consensus 18 ~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~T~~~~~~~nP~wne~f~f~v~~~~~~~~~l~~~V~d~d~- 96 (284)
T 2r83_A 18 NNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELAGKTLVMAVYDFDR- 96 (284)
T ss_dssp TTEEEEEEEEEECCCCCSSSSSCCEEEEEEEETCTTSCEECCCCCSCSSCEEEEEEEECCCGGGCTTCEEEEEEEECCS-
T ss_pred CCEEEEEEEEeeCCCCCCCCCCCCeEEEEEEEcCCCceEeCCcccCCCCCeeCceEEEEechHHhCcCEEEEEEEECCC-
Confidence 46899999999999999999999999999995 4588999999999999999999996432 35799999999998
Q ss_pred CCCCCccceEEEEeeccccCcccceEEEcccccc--CCcceeEEEEEeeec
Q 001987 610 FDQATSLGHAEINFLKHTSTELADMWVSLEGKLA--QSAQSKVHLRIFLEN 658 (985)
Q Consensus 610 ~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~~~~~--~~~~g~l~l~~~ls~ 658 (985)
+++|++||++.|+|.++..+...+.|++|.+..+ ....|.|++.+.+..
T Consensus 97 ~~~~~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~~G~i~l~l~~~p 147 (284)
T 2r83_A 97 FSKHDIIGEFKVPMNTVDFGHVTEEWRDLQSAEKEEQEKLGDICFSLRYVP 147 (284)
T ss_dssp SSCCCEEEEEEEEGGGCCCSSCEEEEEECBCCSSCCCCCCCEEEEEEEEET
T ss_pred CCCCceeEEEEEcchhcccCCcceeEEEeeccccccccccccEEEEEEecC
Confidence 7899999999999999988888899999987432 345688888876643
|
| >2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.64 E-value=7.3e-16 Score=148.87 Aligned_cols=98 Identities=23% Similarity=0.476 Sum_probs=86.1
Q ss_pred CcEEEEEEEEeecCC-----CCCcEEEEEEC-----CeEEeecCccCCCCCeEeeEEEEE-Ee--cCCCceEEEEEEecC
Q 001987 3 STRLYVYVLQGQDLL-----AKDSYVKVQIG-----KHKSKSRILKNNSNPVWNEEFVFR-VH--NIDDEELVVSVFQHN 69 (985)
Q Consensus 3 ~~~L~V~V~~Ar~L~-----~~DPyv~v~l~-----~~~~kT~v~~~t~nP~wnE~f~f~-v~--~~~~~~L~~~V~D~d 69 (985)
.+.|.|+|++|+||+ .+||||+|++. ..++||+++++|+||.|||+|.|. ++ +.....|.|+|||+|
T Consensus 19 ~~~L~V~V~~a~~L~~~~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~~v~~~~l~~~~L~~~V~d~d 98 (134)
T 2b3r_A 19 NGTLFIMVMHIKDLVTEDGADPNPYVKTYLLPDTHKTSKRKTKISRKTRNPTFNEMLVYSGYSKETLRQRELQLSVLSAE 98 (134)
T ss_dssp TTEEEEEEEEEECCCCTTSCCCCEEEEEEEESCSSSCCCEECCCCCSCSSCEEEEEEEEESCCHHHHTTCEEEEEEEECC
T ss_pred CCEEEEEEEEeeCCCCCCCCCCCeEEEEEEEcCCCCCceecCCcCcCCCCCCCccEEEECCcCHHHhCcCEEEEEEEECC
Confidence 578999999999998 68999999993 456899999999999999999999 75 336789999999999
Q ss_pred CCCCCCCCCCCeeEEEEEeCccccccCCCCCCCeEEEee
Q 001987 70 DDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLE 108 (985)
Q Consensus 70 ~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~ 108 (985)
+ .+++++||++.++|.++..+ .....||+|.
T Consensus 99 ---~--~~~~~~lG~~~i~l~~l~~~---~~~~~W~~L~ 129 (134)
T 2b3r_A 99 ---S--LRENFFLGGITLPLKDFNLS---KETVKWYQLT 129 (134)
T ss_dssp ---S--SSCCEEEEEEEEEGGGSCTT---SCEEEEEECB
T ss_pred ---C--CCCCcEEEEEEEEhhhccCC---CCcceeEECC
Confidence 4 57899999999999999764 2467899998
|
| >1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A | Back alignment and structure |
|---|
Probab=99.64 E-value=1.7e-16 Score=157.08 Aligned_cols=103 Identities=21% Similarity=0.320 Sum_probs=81.7
Q ss_pred CeEEEEEEEEeecCCCCCCCCCCCcEEEEEE--CCE---EEEeeeccCCCCCeEeEEEEEEeecCC--CCEEEEEEEecC
Q 001987 535 GWVLTVALVEGVNLASSEMTGLSDPYVVFTC--NGK---TRTSSVQLQTCDPQWHDILEFDAMEEP--PSVLDVEVFDFD 607 (985)
Q Consensus 535 ~g~L~V~v~~a~~L~~~d~~g~~DPyv~v~~--~~~---~~kT~~~~~tlnP~Wne~f~f~v~~~~--~~~L~v~V~D~d 607 (985)
.+.|.|+|++|+||+..|.+|.+||||++++ ++. +++|+++++++||+|||+|.|.+.... ...|.|+|||+|
T Consensus 29 ~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~v~V~d~d 108 (153)
T 1w15_A 29 TNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDIPCESLEEISVEFLVLDSE 108 (153)
T ss_dssp TTEEEEEEEEEESCC------CCCEEEEEEEEETTEEEEEEECCCCCSCSSEEEEEEEEEECCSSSSTTEEEEEEEEECC
T ss_pred CCEEEEEEEEeECCCCcCCCCCCCeEEEEEEEeCCeEeceEecCcccCCCCCeecceEEEECCHHHhCceEEEEEEEeCC
Confidence 4689999999999999999999999999999 443 679999999999999999999964332 368999999999
Q ss_pred CCCCCCCccceEEEEeeccccCcccceEEEccc
Q 001987 608 GPFDQATSLGHAEINFLKHTSTELADMWVSLEG 640 (985)
Q Consensus 608 ~~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~~ 640 (985)
. +++|++||++.|+|.+ .+...+.|++|..
T Consensus 109 ~-~~~~~~lG~~~i~l~~--~~~~~~~W~~l~~ 138 (153)
T 1w15_A 109 R-GSRNEVIGRLVLGATA--EGSGGGHWKEICD 138 (153)
T ss_dssp T-TSCCEEEEEEEESTTC--CSHHHHHHHHHHH
T ss_pred C-CCCCcEEEEEEECCCC--CchHHHHHHHHHh
Confidence 8 7899999999999988 3344556666654
|
| >3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B | Back alignment and structure |
|---|
Probab=99.63 E-value=1e-15 Score=182.01 Aligned_cols=119 Identities=24% Similarity=0.305 Sum_probs=106.3
Q ss_pred CCeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCEEEEeeeccCCCCCeEeEEEEEEeecCCCCEEEEEEEecCCCCCCC
Q 001987 534 DGWVLTVALVEGVNLASSEMTGLSDPYVVFTCNGKTRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGPFDQA 613 (985)
Q Consensus 534 ~~g~L~V~v~~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~~~~~tlnP~Wne~f~f~v~~~~~~~L~v~V~D~d~~~~~d 613 (985)
..|.|+|+|++|++|+++|.+|.+||||++++++++++|+++++|+||+|||+|.|.+.......|.|+|||+|. +++|
T Consensus 385 ~~~~l~v~v~~a~~L~~~d~~~~sdpyv~v~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~~~~~~l~~~v~d~d~-~~~~ 463 (510)
T 3jzy_A 385 GIGRLMVHVIEATELKACKPNGKSNPYCEISMGSQSYTTRTIQDTLNPKWNFNCQFFIKDLYQDVLCLTLFDRDQ-FSPD 463 (510)
T ss_dssp -CEEEEEEEEEEESCCCCSTTSCCCEEEEEEETTEEEECCCCSSCSSCEEEEEEEEEESCTTTCEEEEEEEECCS-SSSC
T ss_pred CCceEEEEeceeecCCCCCCCCCCCeEEEEEECCeeccCCccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCC-CCCC
Confidence 357999999999999999999999999999999999999999999999999999999766666789999999998 7999
Q ss_pred CccceEEEEeeccccCcc----cceEEEccccccCCcceeEEEEEeee
Q 001987 614 TSLGHAEINFLKHTSTEL----ADMWVSLEGKLAQSAQSKVHLRIFLE 657 (985)
Q Consensus 614 d~lG~~~i~l~~l~~~~~----~~~w~~L~~~~~~~~~g~l~l~~~ls 657 (985)
|+||++.++|.++..+.. ...|++|.+. ..|.|+|++.+.
T Consensus 464 d~lG~~~~~l~~l~~~~~~~~~~~~~~~l~~~----~~G~i~l~~~l~ 507 (510)
T 3jzy_A 464 DFLGRTEIPVAKIRTEQESKGPMTRRLLLHEV----PTGEVWVRFDLQ 507 (510)
T ss_dssp CEEEEEEEEHHHHHHHHHHHCSCCEEEECBSS----SSCEEEEEEEEE
T ss_pred CceEEEEEEHHHhccccCCCCceeeeecCCCC----CCceEEEEEEEE
Confidence 999999999999876543 6789999863 568888888764
|
| >3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.62 E-value=3.8e-15 Score=140.87 Aligned_cols=121 Identities=17% Similarity=0.178 Sum_probs=103.4
Q ss_pred CCcEEEEEEEEeecCC-CCCcEEEEEECCeEEeecCcc-CCCCCeEeeEEEEEEe--cCCCceEEEEEEecCCCCCCCCC
Q 001987 2 VSTRLYVYVLQGQDLL-AKDSYVKVQIGKHKSKSRILK-NNSNPVWNEEFVFRVH--NIDDEELVVSVFQHNDDSGLFGS 77 (985)
Q Consensus 2 ~~~~L~V~V~~Ar~L~-~~DPyv~v~l~~~~~kT~v~~-~t~nP~wnE~f~f~v~--~~~~~~L~~~V~D~d~~~~~~~~ 77 (985)
.+|.|+|+|.+|.||+ ++||||++.+.+.+++|++++ +++||+|||.|.|++. ......|.|.|||++ + ++
T Consensus 19 ~~msL~V~l~~a~~Lpg~~Dp~akv~FRg~k~kTkvi~~~~~npvfnE~F~wpl~~~ld~~e~L~v~V~d~~---~--v~ 93 (144)
T 3l9b_A 19 SHMALIVHLKTVSELRGRADRIAKVTFRGQSFYSRVLENCEDVADFDETFRWPVASSIDRNEVLEIQIFNYS---K--VF 93 (144)
T ss_dssp CCEEEEEEEEEEESCCSCEEEEEEEEETTEEEECCCEEEECSCEEEEEEEEEEESSCCCTTCEEEEEEEEEC---T--TS
T ss_pred CcEEEEEEEEEecCCCCCCCCeEEEEEeccceeeEEeccCCCCceEcceEEecCCCCCCCCCEEEEEEEECc---c--cc
Confidence 4689999999999999 999999999999999999998 6999999999999986 567789999999999 6 67
Q ss_pred CCCeeEEEEEeCccccccCCCCCCCeEEEeecCCCCCCCCccccEEEEEEEEEecCC
Q 001987 78 SGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTNKDCGKILLTISLNGKGH 134 (985)
Q Consensus 78 ~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~~G~I~lsl~~~~~~~ 134 (985)
++++||++.++|.++...+. ...+-+|.+... ....++|++.++|.+..+
T Consensus 94 ~nrlIG~~~i~Lq~lv~~~~---l~l~~~LvD~n~----~~~~a~I~l~l~Y~pp~g 143 (144)
T 3l9b_A 94 SNKLIGTFRMVLQKVVEENR---VEVSDTLIDDNN----AIIKTSLSMEVRYQAADG 143 (144)
T ss_dssp CCEEEEEEEEESHHHHHHSE---EEEEEEEECTTS----CEEEEEEEEEEEEEETTC
T ss_pred CCCEEEEEEEEhHHhccCCe---EEEeecccCCCC----CccccEEEEEEEecCCCC
Confidence 99999999999999998742 234567773332 234589999999998754
|
| >3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.61 E-value=1.9e-15 Score=177.45 Aligned_cols=113 Identities=19% Similarity=0.239 Sum_probs=98.4
Q ss_pred CeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCEEEEeeeccCCCCCeEeEEEEEEeec-CCCCEEEEEEEecCCCCCCC
Q 001987 535 GWVLTVALVEGVNLASSEMTGLSDPYVVFTCNGKTRTSSVQLQTCDPQWHDILEFDAME-EPPSVLDVEVFDFDGPFDQA 613 (985)
Q Consensus 535 ~g~L~V~v~~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~~~~~tlnP~Wne~f~f~v~~-~~~~~L~v~V~D~d~~~~~d 613 (985)
.|.|+|+|++|+||+. |.+|++||||+|++++++++|+++++++||+|||+|.|.+.. .....|+|+|||+|. +++|
T Consensus 393 ~~~L~V~V~~A~~L~~-D~~g~sDPYV~v~l~~~~~kTkvik~tlNP~Wne~f~f~~~~~~~~~~L~~~V~D~D~-~~~d 470 (540)
T 3nsj_A 393 LAHLVVSNFRAEHLWG-DYTTATDAYLKVFFGGQEFRTGVVWNNNNPRWTDKMDFENVLLSTGGPLRVQVWDADY-GWDD 470 (540)
T ss_dssp EEEEEEEEEEEESCCC-SSCSCCCEEEEEEETTEEEECCCBCSCSSCBCCCCEEEEEEETTTCCCEEEEEEECCS-SSCC
T ss_pred ccEEEEEEEEccCCCc-ccCCCcCeEEEEEECCEeeeeeeecCCCCCCCCeEEEEEEecCCCCCEEEEEEEECCC-CCCC
Confidence 4799999999999999 999999999999999999999999999999999999998643 467799999999998 7899
Q ss_pred CccceEEEEeeccccCcccceEEEccccccCCcceeEEEEEeeecCC
Q 001987 614 TSLGHAEINFLKHTSTELADMWVSLEGKLAQSAQSKVHLRIFLENNN 660 (985)
Q Consensus 614 d~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~g~l~l~~~ls~~~ 660 (985)
|+||++.++|.. +..+.|++|. .|.|++++.+...+
T Consensus 471 D~LG~~~~~L~~----g~~~~~~~l~-------~G~l~~~~~~~c~p 506 (540)
T 3nsj_A 471 DLLGSCDRSPHS----GFHEVTCELN-------HGRVKFSYHAKCLP 506 (540)
T ss_dssp EEEEEEEECCCS----EEEEEEEECS-------SSEEEEEEEEEECT
T ss_pred CEEEEEEEEeeC----CcEEEEEEcC-------CeEEEEEEEEEECC
Confidence 999999999883 3467899976 36788887654443
|
| >2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.61 E-value=4.3e-15 Score=142.67 Aligned_cols=98 Identities=24% Similarity=0.410 Sum_probs=78.3
Q ss_pred CCCcEEEEEEEEeecCC---CCCcEEEEEECCeEEeecCcc-CCCCCeEeeEEEEEEecCCCceEEEEEEecCCCCCCCC
Q 001987 1 MVSTRLYVYVLQGQDLL---AKDSYVKVQIGKHKSKSRILK-NNSNPVWNEEFVFRVHNIDDEELVVSVFQHNDDSGLFG 76 (985)
Q Consensus 1 ~~~~~L~V~V~~Ar~L~---~~DPyv~v~l~~~~~kT~v~~-~t~nP~wnE~f~f~v~~~~~~~L~~~V~D~d~~~~~~~ 76 (985)
|+.+.|.|+|++|++|+ .+||||+|+ . +..+|++++ +++||.|||+|.|.+. .....|.|+|||+| .
T Consensus 2 ~~~~~L~V~V~~A~~l~~~g~~DPYv~v~-~-~~~kt~~~~~~t~nP~WnE~f~f~v~-~~~~~L~~~V~D~d------~ 72 (131)
T 2cjt_A 2 GVMSLLCVGVKKAKFDGAQEKFNTYVTLK-V-QNVKSTTIAVRGSQPSWEQDFMFEIN-RLDLGLTVEVWNKG------L 72 (131)
T ss_dssp CCCEEEEEEEEEEECSSCGGGCEEEEEEE-E-TTEEEECCCEESSSCEEEEEEEEEEC-CCSSEEEEEEEECC------S
T ss_pred CcceEEEEEEEEeECCCCCCCcCeEEEEE-e-cCEEEeEecCCCCCceECCEEEEEEe-CCCCeEEEEEEECC------C
Confidence 78899999999999987 789999999 3 334555554 6999999999999995 45567999999999 4
Q ss_pred CCCCeeEEEEEeCccccccCCCCCCCeEEEee
Q 001987 77 SSGELMGRVRVPVSSIAAEDNHMLPPTWFSLE 108 (985)
Q Consensus 77 ~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~ 108 (985)
++|++||++.+||.++..... .....|.++.
T Consensus 73 ~~dd~iG~~~i~l~~l~~~~~-~~~~~~~~~~ 103 (131)
T 2cjt_A 73 IWDTMVGTVWIPLRTIRQSNE-EGPGEWLTLD 103 (131)
T ss_dssp SCEEEEEEEEEEGGGSCBCSS-CCCCEEEECB
T ss_pred CCCCeEEEEEEEHHHhhhcCC-CCccccEEcc
Confidence 689999999999999875531 1123566654
|
| >2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.61 E-value=8.5e-16 Score=152.07 Aligned_cols=99 Identities=16% Similarity=0.320 Sum_probs=85.3
Q ss_pred CcEEEEEEEEeecCC------CCCcEEEEEECC---e---EEeecCccCCCCCeEeeEEEEEEe--cCCCceEEEEEEec
Q 001987 3 STRLYVYVLQGQDLL------AKDSYVKVQIGK---H---KSKSRILKNNSNPVWNEEFVFRVH--NIDDEELVVSVFQH 68 (985)
Q Consensus 3 ~~~L~V~V~~Ar~L~------~~DPyv~v~l~~---~---~~kT~v~~~t~nP~wnE~f~f~v~--~~~~~~L~~~V~D~ 68 (985)
.+.|+|+|++|+||+ .+||||++++.+ . ++||+++++|+||+|||+|.|.++ +.....|.|+|||+
T Consensus 42 ~~~L~V~Vi~a~~L~~~d~~g~sDPyVkv~l~~~~~~~~~~~kT~v~~~tlnP~wnE~F~f~v~~~~l~~~~L~~~V~d~ 121 (155)
T 2z0u_A 42 NKQFAILIIQLSNLSALLQQQDQKVNIRVAVLPCSESTTCLFRTRPLDASDTLVFNEVFWVSMSYPALHQKTLRVDVCTT 121 (155)
T ss_dssp TTEEEEEEEEEECGGGTCCSCCSEEEEEEEEESCSCHHHHEEECCCEECCSSEEEEEEEEEECCHHHHHHCEEEEEEEEE
T ss_pred CCEEEEEEEEccCcCCcccCCCCCEEEEEEEecCCCCCccceeCCcCCCCCCCccccEEEEEcCHHHhCcCEEEEEEEEC
Confidence 478999999999998 689999999975 2 699999999999999999999985 23467899999999
Q ss_pred CCCCCCCCCCCCeeEEEEEeCccccccCCCCCCCeEEEee
Q 001987 69 NDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLE 108 (985)
Q Consensus 69 d~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~ 108 (985)
| + .+++++||++.++|.++.... .....||+|.
T Consensus 122 d---~--~~~~d~iG~~~i~l~~l~~~~--~~~~~W~~L~ 154 (155)
T 2z0u_A 122 D---R--SHLEECLGGAQISLAEVCRSG--ERSTRWYNLL 154 (155)
T ss_dssp C---T--TSCEEEEEEEEEECTTSCTTC--CCEEEEEEEB
T ss_pred C---C--CCCCcEEEEEEEEHHHccCCC--CccccceEcc
Confidence 9 5 579999999999999996321 2457899986
|
| >1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A | Back alignment and structure |
|---|
Probab=99.60 E-value=3.1e-15 Score=164.77 Aligned_cols=124 Identities=19% Similarity=0.370 Sum_probs=102.1
Q ss_pred CCeEEEEEEEEeecCCCCCCCCCCCcEEEEEE---CCEEEEeeeccCCCCCeEeEEEEEEeecC--CCCEEEEEEEecCC
Q 001987 534 DGWVLTVALVEGVNLASSEMTGLSDPYVVFTC---NGKTRTSSVQLQTCDPQWHDILEFDAMEE--PPSVLDVEVFDFDG 608 (985)
Q Consensus 534 ~~g~L~V~v~~a~~L~~~d~~g~~DPyv~v~~---~~~~~kT~~~~~tlnP~Wne~f~f~v~~~--~~~~L~v~V~D~d~ 608 (985)
..+.|.|+|++|++|+++|.+|.+||||++++ +.+.++|+++++++||+|||+|.|.+... ....|.|+|||+|.
T Consensus 18 ~~~~L~v~v~~a~~L~~~d~~g~~dPyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~~~V~d~d~ 97 (296)
T 1dqv_A 18 GSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLAELAQRKLHFSVYDFDR 97 (296)
T ss_dssp SSCEEEEEEEEEECCCCCSTTSCCCEEEEEECTTSTTSCEECCCCCSCSSCEEEEEEEEECCGGGGSSCCCEEEEEECCS
T ss_pred CCCEEEEEEEEeECCCCcCCCCCcCeEEEEEEEcCCCeeEeCCccCCCCCCcEeeEEEEEecHHHhcCCEEEEEEEEcCC
Confidence 35689999999999999999999999999999 56789999999999999999999996433 24589999999998
Q ss_pred CCCCCCccceEEEE-eecccc-CcccceEEEccccc-cCCcceeEEEEEeeec
Q 001987 609 PFDQATSLGHAEIN-FLKHTS-TELADMWVSLEGKL-AQSAQSKVHLRIFLEN 658 (985)
Q Consensus 609 ~~~~dd~lG~~~i~-l~~l~~-~~~~~~w~~L~~~~-~~~~~g~l~l~~~ls~ 658 (985)
+++|++||++.|+ +..+.. ......|++|.... .....|.|++.+.+..
T Consensus 98 -~~~~~~iG~~~i~~l~~~~~~~~~~~~w~~L~~~~~~~~~~G~i~vsl~y~~ 149 (296)
T 1dqv_A 98 -FSRHDLIGQVVLDNLLELAEQPPDRPLWRDILEGGSEKADLGELNFSLCYLP 149 (296)
T ss_dssp -SSCCCEEEEEECCCTTGGGSSCSSCCCCEECBCCSSCCSCCCEEEEEEEEET
T ss_pred -CCCCceEEEEEeccccccccCCccceeeeccccccccccccceEEEEEEecc
Confidence 8999999999996 444433 34567899998643 3345688988887644
|
| >3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.7.1.2 PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=3.4e-15 Score=145.89 Aligned_cols=98 Identities=29% Similarity=0.576 Sum_probs=86.1
Q ss_pred CcEEEEEEEEeecCC------CCCcEEEEEEC---CeEEeecCccCCCCCeEeeEEEEEEe--cCCCceEEEEEEecCCC
Q 001987 3 STRLYVYVLQGQDLL------AKDSYVKVQIG---KHKSKSRILKNNSNPVWNEEFVFRVH--NIDDEELVVSVFQHNDD 71 (985)
Q Consensus 3 ~~~L~V~V~~Ar~L~------~~DPyv~v~l~---~~~~kT~v~~~t~nP~wnE~f~f~v~--~~~~~~L~~~V~D~d~~ 71 (985)
.+.|.|+|++|+||+ .+||||++++. ..+++|+++++|+||.|||+|.|.++ +.....|.|+|||+|
T Consensus 33 ~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d-- 110 (143)
T 3f04_A 33 NNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFD-- 110 (143)
T ss_dssp TTEEEEEEEEEECCCCBGGGBCCCEEEEEEEESCCSCCEECCCCCSCSSCEEEEEEEECCCHHHHTTCEEEEEEEECC--
T ss_pred CCEEEEEEEEecCCCCCCCCCCcCcEEEEEEECCCCccEECccCcCCCCCcCcCeEEEeecHhhcCCCEEEEEEEeCC--
Confidence 578999999999999 68999999994 45799999999999999999999986 345689999999999
Q ss_pred CCCCCCCCCeeEEEEEeCccccccCCCCCCCeEEEee
Q 001987 72 SGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLE 108 (985)
Q Consensus 72 ~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~ 108 (985)
+ .+++++||++.++|.++..+ .....||+|+
T Consensus 111 -~--~~~~~~iG~~~i~l~~l~~~---~~~~~W~~L~ 141 (143)
T 3f04_A 111 -R--FSKHDIIGEFKVPMNTVDFG---HVTEEWRDLQ 141 (143)
T ss_dssp -S--SSCCEEEEEEEEEGGGCCTT---SCEEEEEECB
T ss_pred -C--CCCCceEEEEEEEHHHccCC---CCcceEEECc
Confidence 4 57899999999999999765 2467899998
|
| >1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.60 E-value=4.9e-15 Score=143.83 Aligned_cols=99 Identities=17% Similarity=0.324 Sum_probs=85.0
Q ss_pred CcEEEEEEEEeecCC---CCCcEEEEEECC----eEEeecCccCCCCCeEeeEEEEEEe--cCCCceEEEEEEecCCCCC
Q 001987 3 STRLYVYVLQGQDLL---AKDSYVKVQIGK----HKSKSRILKNNSNPVWNEEFVFRVH--NIDDEELVVSVFQHNDDSG 73 (985)
Q Consensus 3 ~~~L~V~V~~Ar~L~---~~DPyv~v~l~~----~~~kT~v~~~t~nP~wnE~f~f~v~--~~~~~~L~~~V~D~d~~~~ 73 (985)
.+.|+|+|++|++.. .+||||+|++.+ .+++|+++++|+||+|||+|.|.++ +.....|.|+|||+| +
T Consensus 25 ~~~L~V~v~~a~~~d~~g~sDPyv~v~l~~~~~~~~~kT~v~~~tlnP~wnE~f~f~v~~~~l~~~~L~~~V~d~d---~ 101 (138)
T 1wfm_A 25 KAELFVTRLEAVTSNHDGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPLAEEELPTATLTLTLRTCD---R 101 (138)
T ss_dssp TTEEEEEEEEEECCCCSSCCCEEEEEEEEETTEEEEEECCCCCCCSSEECSSCEEEECCTTSSTTCEEEEEEEECC---S
T ss_pred CCEEEEEEEEEEcCCCCCCcceEEEEEEEcCCCcccEecccCcCCCCCcCCceEEEEecHHHcCCCEEEEEEEECC---C
Confidence 578999999999755 799999999952 3589999999999999999999985 234679999999999 5
Q ss_pred CCCCCCCeeEEEEEeCccccccCCCCCCCeEEEeec
Q 001987 74 LFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLET 109 (985)
Q Consensus 74 ~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~~ 109 (985)
.+++++||++.++|.++... .....|++|.+
T Consensus 102 --~~~dd~lG~~~i~l~~l~~~---~~~~~W~~L~~ 132 (138)
T 1wfm_A 102 --FSRHSVAGELRLGLDGTSVP---LGAAQWGELKT 132 (138)
T ss_dssp --SCTTSCSEEEEEESSSSSSC---TTCCEEEECCC
T ss_pred --CCCCcEEEEEEEEcccccCc---ccccceeeCcC
Confidence 57999999999999999754 24678999983
|
| >1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.59 E-value=4.2e-15 Score=146.87 Aligned_cols=98 Identities=29% Similarity=0.576 Sum_probs=85.7
Q ss_pred CcEEEEEEEEeecCC------CCCcEEEEEEC---CeEEeecCccCCCCCeEeeEEEEEEe--cCCCceEEEEEEecCCC
Q 001987 3 STRLYVYVLQGQDLL------AKDSYVKVQIG---KHKSKSRILKNNSNPVWNEEFVFRVH--NIDDEELVVSVFQHNDD 71 (985)
Q Consensus 3 ~~~L~V~V~~Ar~L~------~~DPyv~v~l~---~~~~kT~v~~~t~nP~wnE~f~f~v~--~~~~~~L~~~V~D~d~~ 71 (985)
.+.|.|+|++|+||+ .+||||+|++. ..+++|+++++|+||.|||+|.|.+. +.....|.|+|||+|
T Consensus 41 ~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d-- 118 (152)
T 1rsy_A 41 NNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFD-- 118 (152)
T ss_dssp TTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETTCCSCEECCCCTTCSSCEEEEEEEECCCHHHHTTCEEEEEEEECC--
T ss_pred CCEEEEEEEEeECCCCccCCCCcCeEEEEEEEcCCCceEeccccCCCCCCcCcccEEEeecHHHcCCCEEEEEEEECC--
Confidence 578999999999998 58999999995 45799999999999999999999985 235789999999999
Q ss_pred CCCCCCCCCeeEEEEEeCccccccCCCCCCCeEEEee
Q 001987 72 SGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLE 108 (985)
Q Consensus 72 ~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~ 108 (985)
+ .+++++||++.++|.++..+ .....||+|.
T Consensus 119 -~--~~~~~~iG~~~i~l~~l~~~---~~~~~W~~L~ 149 (152)
T 1rsy_A 119 -R--FSKHDIIGEFKVPMNTVDFG---HVTEEWRDLQ 149 (152)
T ss_dssp -S--SSCCEEEEEEEEEGGGCCCS---SCEEEEEECB
T ss_pred -C--CCCCcEEEEEEEEchhccCC---CCcceEEECC
Confidence 4 57899999999999999754 2467899998
|
| >3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.59 E-value=1.7e-15 Score=148.99 Aligned_cols=101 Identities=21% Similarity=0.351 Sum_probs=86.1
Q ss_pred CcEEEEEEEEeecCC-------CCCcEEEEEECC-----eEEeecCccCCCCCeEeeEEEEEEec--CCCceEEEEEEec
Q 001987 3 STRLYVYVLQGQDLL-------AKDSYVKVQIGK-----HKSKSRILKNNSNPVWNEEFVFRVHN--IDDEELVVSVFQH 68 (985)
Q Consensus 3 ~~~L~V~V~~Ar~L~-------~~DPyv~v~l~~-----~~~kT~v~~~t~nP~wnE~f~f~v~~--~~~~~L~~~V~D~ 68 (985)
.+.|.|+|++|+||+ .+||||++++.+ .+++|+++++|+||.|||+|.|.++. .....|.|+|||+
T Consensus 22 ~~~L~V~v~~a~~L~~~d~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~~L~~~V~d~ 101 (148)
T 3fdw_A 22 TQSLVVHVKECHQLAYADEAKKRSNPYVKTYLLPDKSRQGKRKTSIKRDTVNPLYDETLRYEIPESLLAQRTLQFSVWHH 101 (148)
T ss_dssp TTEEEEEEEEEESCCCSBTTTTBCCEEEEEEEETCCSGGGEEECCCCSSCSSCEEEEEEEEECCSTTGGGCEEEEEEEEE
T ss_pred CCEEEEEEEEecCCCCcccCCCCCCeEEEEEEEcCCcccCccccccCCCCCCCcEeeEEEEEeChhHhCceEEEEEEEEC
Confidence 578999999999998 489999999972 47999999999999999999999852 2456899999999
Q ss_pred CCCCCCCCCCCCeeEEEEEeCccccccCCCCCCCeEEEeecCCC
Q 001987 69 NDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKT 112 (985)
Q Consensus 69 d~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~~~~~ 112 (985)
| + .+++++||++.++|.++.... ....||+|. ++.
T Consensus 102 d---~--~~~~~~iG~~~i~l~~l~~~~---~~~~W~~L~-~~~ 136 (148)
T 3fdw_A 102 G---R--FGRNTFLGEAEIQMDSWKLDK---KLDHCLPLH-GKI 136 (148)
T ss_dssp C---G--GGCEEEEEEEEEEHHHHHHHC---CSEEEEECB-CC-
T ss_pred C---C--CcCCcEEEEEEEEcccccccC---CccceEECc-Ccc
Confidence 9 4 578999999999999998663 367999999 443
|
| >2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.59 E-value=4e-15 Score=142.54 Aligned_cols=97 Identities=24% Similarity=0.612 Sum_probs=80.6
Q ss_pred CcEEEEEEEEeecCC------CCCcEEEEEE-----CCeEEeecCccCCCCCeEeeEEEEEE-e--cCCCceEEEEEEec
Q 001987 3 STRLYVYVLQGQDLL------AKDSYVKVQI-----GKHKSKSRILKNNSNPVWNEEFVFRV-H--NIDDEELVVSVFQH 68 (985)
Q Consensus 3 ~~~L~V~V~~Ar~L~------~~DPyv~v~l-----~~~~~kT~v~~~t~nP~wnE~f~f~v-~--~~~~~~L~~~V~D~ 68 (985)
.+.|.|+|++|+||+ .+||||++++ ...+++|+++++|+||.|||+|.|.+ + +.....|.|+|||+
T Consensus 17 ~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~~~V~d~ 96 (129)
T 2bwq_A 17 GHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWDQ 96 (129)
T ss_dssp TTEEEEEEEEEESCCCCTTSCCBCEEEEEEEESSCSGGGEEECCCCSSBSSCEEEEEEEECSCCGGGGGGCEEEEEEEEC
T ss_pred CCEEEEEEEEeeCCCCCCCCCCCCCEEEEEEecCCCCCcceecccccCCCCCccccEEEEccCCHHHhcCCeEEEEEEEC
Confidence 478999999999999 5899999999 34679999999999999999999994 3 33568999999999
Q ss_pred CCCCCCCCCC--CCeeEEEEEeCccccccCCCCCCCeEEEee
Q 001987 69 NDDSGLFGSS--GELMGRVRVPVSSIAAEDNHMLPPTWFSLE 108 (985)
Q Consensus 69 d~~~~~~~~~--d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~ 108 (985)
| + .++ +++||++.++|.++...+ ...||+|+
T Consensus 97 d---~--~~~~~~~~lG~~~i~l~~l~~~~----~~~W~~Lq 129 (129)
T 2bwq_A 97 A---R--VREEESEFLGEILIELETALLDD----EPHWYKLQ 129 (129)
T ss_dssp ------------CEEEEEEEEEGGGCCCSS----CEEEEECC
T ss_pred C---c--CcCcCCceeEEEEEEccccCCCc----CCccEECc
Confidence 9 4 455 999999999999987642 67899985
|
| >3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.58 E-value=7.8e-15 Score=138.74 Aligned_cols=119 Identities=14% Similarity=0.209 Sum_probs=105.8
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCEEEEeeecc-CCCCCeEeEEEEEEeec--CCCCEEEEEEEecCCCCCCC
Q 001987 537 VLTVALVEGVNLASSEMTGLSDPYVVFTCNGKTRTSSVQL-QTCDPQWHDILEFDAME--EPPSVLDVEVFDFDGPFDQA 613 (985)
Q Consensus 537 ~L~V~v~~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~~~~-~tlnP~Wne~f~f~v~~--~~~~~L~v~V~D~d~~~~~d 613 (985)
-|+|.|.+|.+|+ |++|||+++.+.+.+++|++++ +++||+|||.|+|++.. +....|.|.|||+++ +++|
T Consensus 22 sL~V~l~~a~~Lp-----g~~Dp~akv~FRg~k~kTkvi~~~~~npvfnE~F~wpl~~~ld~~e~L~v~V~d~~~-v~~n 95 (144)
T 3l9b_A 22 ALIVHLKTVSELR-----GRADRIAKVTFRGQSFYSRVLENCEDVADFDETFRWPVASSIDRNEVLEIQIFNYSK-VFSN 95 (144)
T ss_dssp EEEEEEEEEESCC-----SCEEEEEEEEETTEEEECCCEEEECSCEEEEEEEEEEESSCCCTTCEEEEEEEEECT-TSCC
T ss_pred EEEEEEEEecCCC-----CCCCCeEEEEEeccceeeEEeccCCCCceEcceEEecCCCCCCCCCEEEEEEEECcc-ccCC
Confidence 6899999999998 5899999999999999999998 69999999999999743 345699999999999 8999
Q ss_pred CccceEEEEeeccccCcccceEEEccccccCCcceeEEEEEeeecCCC
Q 001987 614 TSLGHAEINFLKHTSTELADMWVSLEGKLAQSAQSKVHLRIFLENNNG 661 (985)
Q Consensus 614 d~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~g~l~l~~~ls~~~~ 661 (985)
.+||++.|+|.++..++....+.+|.+...++..+.|.+.+.|..+.+
T Consensus 96 rlIG~~~i~Lq~lv~~~~l~l~~~LvD~n~~~~~a~I~l~l~Y~pp~g 143 (144)
T 3l9b_A 96 KLIGTFRMVLQKVVEENRVEVSDTLIDDNNAIIKTSLSMEVRYQAADG 143 (144)
T ss_dssp EEEEEEEEESHHHHHHSEEEEEEEEECTTSCEEEEEEEEEEEEEETTC
T ss_pred CEEEEEEEEhHHhccCCeEEEeecccCCCCCccccEEEEEEEecCCCC
Confidence 999999999999888777778889988777777789999998877654
|
| >1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.58 E-value=1.7e-15 Score=149.06 Aligned_cols=98 Identities=29% Similarity=0.522 Sum_probs=85.2
Q ss_pred CcEEEEEEEEeecCC------CCCcEEEEEEC-----CeEEeecCccCCCCCeEeeEEEEEEecC-CCceEEEEEEecCC
Q 001987 3 STRLYVYVLQGQDLL------AKDSYVKVQIG-----KHKSKSRILKNNSNPVWNEEFVFRVHNI-DDEELVVSVFQHND 70 (985)
Q Consensus 3 ~~~L~V~V~~Ar~L~------~~DPyv~v~l~-----~~~~kT~v~~~t~nP~wnE~f~f~v~~~-~~~~L~~~V~D~d~ 70 (985)
.+.|.|+|++|+||+ .+||||+|++. ..+++|+++++++||.|||+|.|.+... ....|.|+|||+|
T Consensus 30 ~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~L~i~V~d~d- 108 (149)
T 1a25_A 30 REVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESDKDRRLSVEIWDWD- 108 (149)
T ss_dssp SSEEEEEEEEEESCCCCSTTSCCCEEEEEEEESCTTCSSCEECCCCSSCSSCEEEEEEEEECCSGGGGCEEEEEEEECC-
T ss_pred CCEEEEEEEEeeCCCCCCCCCCcCeEEEEEEECCCCCcceEecceeCCCCCCcCCcEEEEEeccccCCCEEEEEEEECC-
Confidence 578999999999998 68999999997 3579999999999999999999998532 3468999999999
Q ss_pred CCCCCCCCCCeeEEEEEeCccccccCCCCCCCeEEEeec
Q 001987 71 DSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLET 109 (985)
Q Consensus 71 ~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~~ 109 (985)
. .+++++||++.++|.++... ....||+|..
T Consensus 109 --~--~~~~~~iG~~~i~l~~l~~~----~~~~W~~L~~ 139 (149)
T 1a25_A 109 --L--TSRNDFMGSLSFGISELQKA----GVDGWFKLLS 139 (149)
T ss_dssp --S--SSCCEEEEEEEEEHHHHTTC----CEEEEEECBC
T ss_pred --C--CCCCCEEEEEEEEHHHhCcC----ccCCeEEccC
Confidence 4 57899999999999999754 3678999983
|
| >1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.58 E-value=2e-15 Score=147.31 Aligned_cols=98 Identities=27% Similarity=0.545 Sum_probs=85.4
Q ss_pred CcEEEEEEEEeecCC------CCCcEEEEEECCe--------------EEeecCccCCCCCeEeeEEEEE-Ee--cCCCc
Q 001987 3 STRLYVYVLQGQDLL------AKDSYVKVQIGKH--------------KSKSRILKNNSNPVWNEEFVFR-VH--NIDDE 59 (985)
Q Consensus 3 ~~~L~V~V~~Ar~L~------~~DPyv~v~l~~~--------------~~kT~v~~~t~nP~wnE~f~f~-v~--~~~~~ 59 (985)
.+.|.|+|++|+||+ .+||||+|++.+. +++|+++++|+||.|||+|.|. ++ +....
T Consensus 17 ~~~L~V~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~v~~~~l~~~ 96 (142)
T 1rh8_A 17 LGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEWNQTVIYKSISMEQLMKK 96 (142)
T ss_dssp TTEEEEEEEEEESCCCCSSSSCSCCEEEEEETTSSCCCEECCCCCHHHHTTTTTTHHHHSCEEEEEEEECSCCHHHHTTC
T ss_pred CCEEEEEEEEecCCCCCCCCCCCCceEEEEEecCCCcccccccccccceeeccccCCCCCCCCCCEEEECCcCHHHccCC
Confidence 468999999999999 6899999999863 4899999999999999999997 64 33678
Q ss_pred eEEEEEEecCCCCCCCCCCCCeeEEEEEeCccccccCCCCCCCeEEEee
Q 001987 60 ELVVSVFQHNDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLE 108 (985)
Q Consensus 60 ~L~~~V~D~d~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~ 108 (985)
.|.|+|||+| + .+++++||++.++|.++.... ....||+|.
T Consensus 97 ~l~i~V~d~d---~--~~~~~~lG~~~i~l~~l~~~~---~~~~W~~L~ 137 (142)
T 1rh8_A 97 TLEVTVWDYD---R--FSSNDFLGEVLIDLSSTSHLD---NTPRWYPLK 137 (142)
T ss_dssp EEEEEEEEEC---S--SSCEEEEEEEEEETTSCGGGT---TCCEEEECB
T ss_pred EEEEEEEECC---C--CCCCceEEEEEEeccccccCC---CCCeEEECC
Confidence 9999999999 4 578999999999999987642 467999998
|
| >2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.58 E-value=6.9e-15 Score=147.12 Aligned_cols=122 Identities=16% Similarity=0.165 Sum_probs=90.8
Q ss_pred CCCeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCEEEEeeecc-CCCCCeEeEEEEEEeecCCCCEEEEEEEecCCCCC
Q 001987 533 GDGWVLTVALVEGVNLASSEMTGLSDPYVVFTCNGKTRTSSVQL-QTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGPFD 611 (985)
Q Consensus 533 ~~~g~L~V~v~~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~~~~-~tlnP~Wne~f~f~v~~~~~~~L~v~V~D~d~~~~ 611 (985)
+..+.|+|+|++|++|+ .+|.+||||+++ .+.++|++++ +++||+|||+|.|.+. .....|.|+|||+| ++
T Consensus 11 g~~~~L~V~V~~A~~l~---~~g~~DPYV~v~--~~~~kt~~~~~~t~nP~WnE~f~f~v~-~~~~~L~~~V~D~d--~~ 82 (167)
T 2cjs_A 11 GILSLLCVGVKKAKFDG---AQEKFNTYVTLK--VQNVESTTIAVRGSQPSWEQDFMFEIN-RLDLGLTVEVWNKG--LI 82 (167)
T ss_dssp SCCCEEEEEEEEEECSS---CGGGCEEEEEEE--ETTEEEECCCEESSSCEEEEEEEEECC-CTTSEEEEEEEECC--SS
T ss_pred CceEEEEEEEEEEECCC---CCCCCCeEEEEE--ecceEEEEecCCCCCCCCCCEEEEEee-CCCCEEEEEEEECC--CC
Confidence 34679999999999885 378999999999 3445676665 6999999999999954 55678999999999 47
Q ss_pred CCCccceEEEEeeccccCcc--cceEEEc----ccccc------CCcceeEEEEEeeecCCCc
Q 001987 612 QATSLGHAEINFLKHTSTEL--ADMWVSL----EGKLA------QSAQSKVHLRIFLENNNGV 662 (985)
Q Consensus 612 ~dd~lG~~~i~l~~l~~~~~--~~~w~~L----~~~~~------~~~~g~l~l~~~ls~~~~~ 662 (985)
+||+||++.|+|.++..... ...|.++ ..+.+ .+..+++++.+.+..+.+.
T Consensus 83 ~dd~iG~~~i~L~~l~~~~~~g~~~~~~~~~~~~~~~g~~~g~~~p~~~~lll~~~~e~~~~~ 145 (167)
T 2cjs_A 83 WDTMVGTVWIPLRTIRQSNEEGPGEWLTLDSQAIMADSEICGTKDPTFHRILLDAHFELPLDI 145 (167)
T ss_dssp CCEEEEEEEEEGGGSCBCSSCCCCEEEEEEEEEEEETTEEEEEEEEEEEEEEEEEEEECCCCC
T ss_pred CCceEEEEEEEHHHhcccCcCCcccceeeeeeeEcCCCCCCceEccccceEEEEEEeecCCCC
Confidence 89999999999999755331 1134433 21111 1234668888887776554
|
| >2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.57 E-value=1.6e-14 Score=138.77 Aligned_cols=97 Identities=18% Similarity=0.227 Sum_probs=77.3
Q ss_pred CeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCEEEEeeec-cCCCCCeEeEEEEEEeecCCCCEEEEEEEecCCCCCCC
Q 001987 535 GWVLTVALVEGVNLASSEMTGLSDPYVVFTCNGKTRTSSVQ-LQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGPFDQA 613 (985)
Q Consensus 535 ~g~L~V~v~~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~~~-~~tlnP~Wne~f~f~v~~~~~~~L~v~V~D~d~~~~~d 613 (985)
.+.|.|+|++|++|+. +|.+||||+++ .+..+|+++ .+++||+|||+|.|.+. .....|.|+|||+| +++|
T Consensus 4 ~~~L~V~V~~A~~l~~---~g~~DPYv~v~--~~~~kt~~~~~~t~nP~WnE~f~f~v~-~~~~~L~~~V~D~d--~~~d 75 (131)
T 2cjt_A 4 MSLLCVGVKKAKFDGA---QEKFNTYVTLK--VQNVKSTTIAVRGSQPSWEQDFMFEIN-RLDLGLTVEVWNKG--LIWD 75 (131)
T ss_dssp CEEEEEEEEEEECSSC---GGGCEEEEEEE--ETTEEEECCCEESSSCEEEEEEEEEEC-CCSSEEEEEEEECC--SSCE
T ss_pred ceEEEEEEEEeECCCC---CCCcCeEEEEE--ecCEEEeEecCCCCCceECCEEEEEEe-CCCCeEEEEEEECC--CCCC
Confidence 4699999999999853 78999999999 334455555 47999999999999954 55668999999999 4889
Q ss_pred CccceEEEEeeccccCc--ccceEEEcc
Q 001987 614 TSLGHAEINFLKHTSTE--LADMWVSLE 639 (985)
Q Consensus 614 d~lG~~~i~l~~l~~~~--~~~~w~~L~ 639 (985)
|+||++.|+|.++.... ....|.++.
T Consensus 76 d~iG~~~i~l~~l~~~~~~~~~~~~~~~ 103 (131)
T 2cjt_A 76 TMVGTVWIPLRTIRQSNEEGPGEWLTLD 103 (131)
T ss_dssp EEEEEEEEEGGGSCBCSSCCCCEEEECB
T ss_pred CeEEEEEEEHHHhhhcCCCCccccEEcc
Confidence 99999999999986543 122466554
|
| >2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.57 E-value=7.6e-15 Score=143.01 Aligned_cols=98 Identities=27% Similarity=0.528 Sum_probs=85.3
Q ss_pred CcEEEEEEEEeecCC------CCCcEEEEEEC---CeEEeecCccCCCCCeEeeEEEEEE-e--cCCCceEEEEEEecCC
Q 001987 3 STRLYVYVLQGQDLL------AKDSYVKVQIG---KHKSKSRILKNNSNPVWNEEFVFRV-H--NIDDEELVVSVFQHND 70 (985)
Q Consensus 3 ~~~L~V~V~~Ar~L~------~~DPyv~v~l~---~~~~kT~v~~~t~nP~wnE~f~f~v-~--~~~~~~L~~~V~D~d~ 70 (985)
.+.|+|+|++|+||+ .+||||+|++. ..++||+++++++||.|||+|.|.+ + ......|.|+|||+|
T Consensus 25 ~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~V~d~d- 103 (141)
T 2d8k_A 25 ESTLTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKVVQRILYLQVLDYD- 103 (141)
T ss_dssp SCCEEEEEEEEESCCCCSSSSCCCEEEEEEEESCCSSEEECCCCTTCSSCCCCEEEEECSCCHHHHTTSEEEEEEEECC-
T ss_pred CCEEEEEEEEeECCCCCCCCCCCCcEEEEEEECCCCccEeCceEcCCCCCccccEEEECccCHHHcccCEEEEEEEECC-
Confidence 568999999999999 58999999995 3579999999999999999999984 3 235689999999999
Q ss_pred CCCCCCCCCCeeEEEEEeCccccccCCCCCCCeEEEee
Q 001987 71 DSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLE 108 (985)
Q Consensus 71 ~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~ 108 (985)
+ .+++++||++.++|.++..+. ....||+|.
T Consensus 104 --~--~~~~~~iG~~~i~l~~l~~~~---~~~~W~~L~ 134 (141)
T 2d8k_A 104 --R--FSRNDPIGEVSIPLNKVDLTQ---MQTFWKDLK 134 (141)
T ss_dssp --S--SSSCEEEEEEEEETTTSCTTS---CEEEEECCE
T ss_pred --C--CCCCcEEEEEEEEhhhhcCCC---CccEEEECc
Confidence 4 578999999999999998652 467899999
|
| >2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A | Back alignment and structure |
|---|
Probab=99.55 E-value=9.1e-15 Score=142.62 Aligned_cols=99 Identities=24% Similarity=0.472 Sum_probs=84.8
Q ss_pred CcEEEEEEEEeecCC------CCCcEEEEEECC-----eEEeecCccCCCCCeEeeEEEEE-Ee--cCCCceEEEEEEec
Q 001987 3 STRLYVYVLQGQDLL------AKDSYVKVQIGK-----HKSKSRILKNNSNPVWNEEFVFR-VH--NIDDEELVVSVFQH 68 (985)
Q Consensus 3 ~~~L~V~V~~Ar~L~------~~DPyv~v~l~~-----~~~kT~v~~~t~nP~wnE~f~f~-v~--~~~~~~L~~~V~D~ 68 (985)
.+.|.|+|++|+||+ .+||||+|++.+ .++||+++++++||.|||+|.|. +. +.....|.|+|||+
T Consensus 28 ~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~V~d~ 107 (142)
T 2chd_A 28 NSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQYHGITEEDMQRKTLRISVCDE 107 (142)
T ss_dssp GTEEEEEEEEEESCCCCCTTSCCCEEEEEEEESCCSGGGEEECCCCCSCSSCEEEEEEEEESCCHHHHHHCEEEEEEEEE
T ss_pred CCEEEEEEEEecCCCCCCCCCCCCCEEEEEEEcCCCCcceeeCCcCCCCCCCcCcCEEEEcccCHHHccCCEEEEEEEEC
Confidence 468999999999998 589999999975 67999999999999999999998 64 22347999999999
Q ss_pred CCCCCCCCCCCCeeEEEEEeCccccccCCCCCCCeEEEeec
Q 001987 69 NDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLET 109 (985)
Q Consensus 69 d~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~~ 109 (985)
| + .+++++||++.++|.++..+. ....|++|.+
T Consensus 108 d---~--~~~d~~iG~~~i~l~~l~~~~---~~~~~~~L~~ 140 (142)
T 2chd_A 108 D---K--FGHNEFIGETRFSLKKLKANQ---RKNFNICLER 140 (142)
T ss_dssp C---T--TSCEEEEEEEEEEGGGCCTTC---CEEEEEECBC
T ss_pred C---C--CCCCcEEEEEEEEHHHcCCCC---ccEEEEeccc
Confidence 9 4 578999999999999998652 4567888873
|
| >3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} SCOP: b.7.1.0 | Back alignment and structure |
|---|
Probab=99.55 E-value=1.4e-14 Score=143.29 Aligned_cols=103 Identities=24% Similarity=0.460 Sum_probs=84.9
Q ss_pred CCcEEEEEEEEeecCC-----CCCcEEEEEEC-----CeEEeecCccCCCCCeEeeEEEEEEe-cCCCceEEEEEEecCC
Q 001987 2 VSTRLYVYVLQGQDLL-----AKDSYVKVQIG-----KHKSKSRILKNNSNPVWNEEFVFRVH-NIDDEELVVSVFQHND 70 (985)
Q Consensus 2 ~~~~L~V~V~~Ar~L~-----~~DPyv~v~l~-----~~~~kT~v~~~t~nP~wnE~f~f~v~-~~~~~~L~~~V~D~d~ 70 (985)
..+.|.|+|++|+||+ .+||||+|++. ..+++|+++++|+||.|||+|.|.+. ......|.|+|||+|
T Consensus 25 ~~~~L~V~v~~a~~L~~~d~g~~Dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~L~i~V~d~d- 103 (153)
T 3fbk_A 25 QDRVLLLHIIEGKGLISKQPGTCDPYVKISLIPEDSRLRHQKTQTVPDCRDPAFHEHFFFPVQEEDDQKRLLVTVWNRA- 103 (153)
T ss_dssp SSSEEEEEEEEEESCCCCSSSCCCEEEEEEEESCSCCTTCEECCCCTTCSSCEEEEEEEEECCGGGTTSEEEEEEEECC-
T ss_pred CCCEEEEEEEEeeCCCCCCCCCCCEEEEEEEEcCCCCccEEeccccCCCCCCccccEEEEecccHHhCCEEEEEEEeCC-
Confidence 3578999999999998 68999999994 34699999999999999999999985 233356999999999
Q ss_pred CCCCCCCC-CCeeEEEEEeCccccccCCCCCCCeEEEeecCC
Q 001987 71 DSGLFGSS-GELMGRVRVPVSSIAAEDNHMLPPTWFSLETPK 111 (985)
Q Consensus 71 ~~~~~~~~-d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~~~~ 111 (985)
. .++ ++|||++.++|.++.... .....||+|.+..
T Consensus 104 --~--~~~~d~~lG~~~i~l~~l~~~~--~~~~~W~~L~~~~ 139 (153)
T 3fbk_A 104 --S--QSRQSGLIGCMSFGVKSLLTPD--KEISGWYYLLGEH 139 (153)
T ss_dssp --S--SGGGCEEEEEEEEEHHHHTC----CCEEEEEECBCTT
T ss_pred --C--CCCCCcEEEEEEEEHHHhcCCC--CccccEEECCChh
Confidence 4 455 899999999999997421 3467899999443
|
| >1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.55 E-value=2e-14 Score=139.47 Aligned_cols=99 Identities=23% Similarity=0.422 Sum_probs=83.9
Q ss_pred CcEEEEEEEEeecCC-------CCCcEEEEEECC---eEEeecCccCCCCCeEeeEEEEE-Ee--cCCCceEEEEEEecC
Q 001987 3 STRLYVYVLQGQDLL-------AKDSYVKVQIGK---HKSKSRILKNNSNPVWNEEFVFR-VH--NIDDEELVVSVFQHN 69 (985)
Q Consensus 3 ~~~L~V~V~~Ar~L~-------~~DPyv~v~l~~---~~~kT~v~~~t~nP~wnE~f~f~-v~--~~~~~~L~~~V~D~d 69 (985)
.+.|.|+|++|+||+ .+||||+|++.+ ++++|+++++|+||+|||+|.|. ++ +.....|.|+|||+|
T Consensus 21 ~~~L~v~v~~a~~L~~~d~~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~v~~~~~~~~~l~i~V~d~d 100 (138)
T 1ugk_A 21 RKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYGIPYTQIQELALHFTILSFD 100 (138)
T ss_dssp GTEEEEEEEEEESCCCCBTTTTBCEEEEEEEEETTTCSEEECCCCSSCSSCEEEEEEEEECCCSTTGGGCEEEEEEEEEC
T ss_pred CCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEecCCCceEecCcCcCCCCCcEeeEEEEcCcCHHHhccCEEEEEEEECC
Confidence 468999999999998 379999999963 67999999999999999999996 64 224579999999999
Q ss_pred CCCCCCCCCCCeeEEEEEeCccccccCCCCCCCeEEEee
Q 001987 70 DDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLE 108 (985)
Q Consensus 70 ~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~ 108 (985)
+ .+++++||++.++|.++..... ....|++|.
T Consensus 101 ---~--~~~~~~lG~~~i~l~~l~~~~~--~~~~~~~l~ 132 (138)
T 1ugk_A 101 ---R--FSRDDIIGEVLIPLSGIELSEG--KMLMNREII 132 (138)
T ss_dssp ---S--SCCCCCCEEEEEECTTCCCTTC--CEEEEEECB
T ss_pred ---C--CCCCcEEEEEEEehhHccCCCC--cchhhhhhh
Confidence 4 5789999999999999986532 235679998
|
| >1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.55 E-value=5.8e-15 Score=143.72 Aligned_cols=100 Identities=25% Similarity=0.603 Sum_probs=85.0
Q ss_pred CcEEEEEEEEeecCC------CCCcEEEEEEC-----CeEEeecCccCCCCCeEeeEEEEE-Ee--cCCCceEEEEEEec
Q 001987 3 STRLYVYVLQGQDLL------AKDSYVKVQIG-----KHKSKSRILKNNSNPVWNEEFVFR-VH--NIDDEELVVSVFQH 68 (985)
Q Consensus 3 ~~~L~V~V~~Ar~L~------~~DPyv~v~l~-----~~~~kT~v~~~t~nP~wnE~f~f~-v~--~~~~~~L~~~V~D~ 68 (985)
.+.|.|+|++|+||+ .+||||+|++. ..+++|+++++|+||+|||+|.|. ++ +.....|.|+|||+
T Consensus 20 ~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~V~d~ 99 (141)
T 1v27_A 20 GHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWDQ 99 (141)
T ss_dssp TTEEEEEEEEEESCCCCSSSCCCCEEEECCCSSCCSSSSCCBCCCCSSCSSCCCCCCCEECSCCTTGGGTCEEEEEEEEB
T ss_pred CCEEEEEEEEccCCCCcCCCCCCCCEEEEEEecCCCCCcceeCccccCCCCCccccEEEEccCCHHHhcCCEEEEEEEEC
Confidence 578999999999999 58999999993 467999999999999999999998 43 33568999999999
Q ss_pred CCCCCCCCCC--CCeeEEEEEeCccccccCCCCCCCeEEEeecCC
Q 001987 69 NDDSGLFGSS--GELMGRVRVPVSSIAAEDNHMLPPTWFSLETPK 111 (985)
Q Consensus 69 d~~~~~~~~~--d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~~~~ 111 (985)
| + .++ +++||++.++|.++.... ...||+|....
T Consensus 100 d---~--~~~~~~~~lG~~~i~l~~l~~~~----~~~W~~L~~~~ 135 (141)
T 1v27_A 100 A---R--VREEESEFLGEILIELETALLDD----EPHWYKLQTHD 135 (141)
T ss_dssp C---S--SSSCCBCCCEEEEEEGGGCCCSS----EEEEEECBCCS
T ss_pred C---C--CcCCCCceEEEEEEEccccCCCC----CCceEECcccc
Confidence 9 4 455 899999999999987542 67899999443
|
| >2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.55 E-value=9.5e-15 Score=147.26 Aligned_cols=97 Identities=23% Similarity=0.383 Sum_probs=85.4
Q ss_pred CcEEEEEEEEeecCC-------CCCcEEEEEECC-----eEEeecCccCCCCCeEeeEEEEEEecCCCceEEEEEE-ecC
Q 001987 3 STRLYVYVLQGQDLL-------AKDSYVKVQIGK-----HKSKSRILKNNSNPVWNEEFVFRVHNIDDEELVVSVF-QHN 69 (985)
Q Consensus 3 ~~~L~V~V~~Ar~L~-------~~DPyv~v~l~~-----~~~kT~v~~~t~nP~wnE~f~f~v~~~~~~~L~~~V~-D~d 69 (985)
.+.|.|+|++|+||+ .+||||+|++.+ .++||+++++|+||+|||+|.|.+ ......|.|+|| |+|
T Consensus 29 ~~~L~V~v~~a~~L~~~d~~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v-~~~~~~L~~~V~~d~d 107 (171)
T 2q3x_A 29 KGQLEVEVIRARSLTQKPGSKSTPAPYVKVYLLENGACIAKKKTRIARKTLDPLYQQSLVFDE-SPQGKVLQVIVWGDYG 107 (171)
T ss_dssp TTEEEEEEEEEESCCCCC---CCCEEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEECSS-CCTTEEEEEEEEEECS
T ss_pred CCEEEEEEEEeeCCCCCCcCCCCCCceEEEEEECCCccccceeCccCCCCCCCCCCcEEEEEe-cCCCCEEEEEEEEcCC
Confidence 478999999999998 479999999964 378999999999999999999998 456789999999 999
Q ss_pred CCCCCCCCCCCeeEEEEEeCccccccCCCCCCCeEEEee
Q 001987 70 DDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLE 108 (985)
Q Consensus 70 ~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~ 108 (985)
+ .+++++||++.++|.++..+. ....||+|.
T Consensus 108 ---~--~~~d~~iG~~~i~l~~l~~~~---~~~~W~~L~ 138 (171)
T 2q3x_A 108 ---R--MDHKCFMGVAQILLEELDLSS---MVIGWYKLF 138 (171)
T ss_dssp ---T--TCSSEEEEEEEECGGGSCTTS---CEEEEEECB
T ss_pred ---C--CCCCCEEEEEEEEHHHcccCC---CcceeEECC
Confidence 4 578999999999999998552 467899998
|
| >2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.54 E-value=8e-15 Score=143.94 Aligned_cols=98 Identities=22% Similarity=0.412 Sum_probs=84.4
Q ss_pred CcEEEEEEEEeecCC-C------------CCcEEEEEEC---CeEEeecCccCCCCCeEeeEEEEEEec--CCCceEEEE
Q 001987 3 STRLYVYVLQGQDLL-A------------KDSYVKVQIG---KHKSKSRILKNNSNPVWNEEFVFRVHN--IDDEELVVS 64 (985)
Q Consensus 3 ~~~L~V~V~~Ar~L~-~------------~DPyv~v~l~---~~~~kT~v~~~t~nP~wnE~f~f~v~~--~~~~~L~~~ 64 (985)
.+.|.|+|++|+||+ . +||||+|++. ..+++|+++++++||+|||+|.|.+.. .....|.|+
T Consensus 25 ~~~L~V~v~~a~~L~~~~d~~g~~~~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~~~ 104 (147)
T 2enp_A 25 HNHLTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICLLPDQKNSKQTGVKRKTQKPVFEERYTFEIPFLEAQRRTLLLT 104 (147)
T ss_dssp TTEEEEEEEEEECCCCSCSSCCSSCTTCCCCCEEEEEEETCCSSCEECCCCCSCSSCCCCBCCEECCCHHHHHHSEEEEE
T ss_pred CCEEEEEEEEEeCCCCccccccccccCCCCCcEEEEEEEeCCCcceEeecccCCCCCeEeeeEEEEeChHHhccCEEEEE
Confidence 578999999999998 2 7999999997 356899999999999999999999852 245689999
Q ss_pred EEecCCCCCCCCCCCCeeEEEEEeCccccccCCCCCCCeEEEee
Q 001987 65 VFQHNDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLE 108 (985)
Q Consensus 65 V~D~d~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~ 108 (985)
|||+| + .+++++||++.++|.++.... ....|+.|.
T Consensus 105 V~d~d---~--~~~~~~iG~~~i~l~~l~~~~---~~~~w~~L~ 140 (147)
T 2enp_A 105 VVDFD---K--FSRHCVIGKVSVPLCEVDLVK---GGHWWKALI 140 (147)
T ss_dssp EECCS---T--TCCSCCCEEEEEETTTSCTTT---CCCEEECCB
T ss_pred EEECC---C--CcCCcEEEEEEEechhcCCCC---CccEEEEee
Confidence 99999 4 578999999999999997653 357899998
|
| >1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1; phosphoric diester hydrolase, hydrolase, lipid degradation, transducer; HET: I3P; 2.30A {Rattus norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A 1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A 1qat_A | Back alignment and structure |
|---|
Probab=99.53 E-value=3.5e-14 Score=170.48 Aligned_cols=120 Identities=19% Similarity=0.329 Sum_probs=102.3
Q ss_pred CCeEEEEEEEEeecCCCCCC--CCCCCcEEEEEECC-----EEEEeeeccCC-CCCeEeEEEEEEeecCCCCEEEEEEEe
Q 001987 534 DGWVLTVALVEGVNLASSEM--TGLSDPYVVFTCNG-----KTRTSSVQLQT-CDPQWHDILEFDAMEEPPSVLDVEVFD 605 (985)
Q Consensus 534 ~~g~L~V~v~~a~~L~~~d~--~g~~DPyv~v~~~~-----~~~kT~~~~~t-lnP~Wne~f~f~v~~~~~~~L~v~V~D 605 (985)
..+.|+|+|++|++|+..|. +|.+||||+|.+.+ .+++|++++++ +||+|||+|.|.+..+....|+|+|||
T Consensus 495 ~~~~L~V~Vi~A~~L~~~d~~~~~~~DPYV~V~l~g~~~d~~~~kTkvi~~ng~NP~WnE~f~F~v~~~el~~L~~~V~D 574 (624)
T 1djx_A 495 RPERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFEVTVPDLALVRFMVED 574 (624)
T ss_dssp CCEEEEEEEEEEESCCCCSSCSSSCCCEEEEEEEESSGGGCEEEECCCCTTCSSSCEEEEEEEEEESCGGGCEEEEEEEE
T ss_pred cceEEEEEEEEcCCCCcccccccCCCCcEEEEEEecCCCCcceeecccccCCCCCCccCceEEEEEecCCCCEEEEEEEE
Confidence 56899999999999999884 78999999999954 68999999997 999999999999755545799999999
Q ss_pred cCCCCCCCCccceEEEEeeccccCcccceEEEccccccCC-cceeEEEEEeee
Q 001987 606 FDGPFDQATSLGHAEINFLKHTSTELADMWVSLEGKLAQS-AQSKVHLRIFLE 657 (985)
Q Consensus 606 ~d~~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~-~~g~l~l~~~ls 657 (985)
+|. +++|++||++.|||..+..+. .|++|.+..+.. ..+.|.+++.+.
T Consensus 575 ~D~-~~~dd~iG~~~ipl~~L~~G~---r~v~L~d~~g~~~~~~~L~v~i~~~ 623 (624)
T 1djx_A 575 YDS-SSKNDFIGQSTIPWNSLKQGY---RHVHLLSKNGDQHPSATLFVKISIQ 623 (624)
T ss_dssp CCS-SSCCEEEEEEEEEGGGBCCEE---EEEEEECTTSCEEEEEEEEEEEEEE
T ss_pred cCC-CCCCceeEEEEEEHHHcCCCc---EEEeCCCCCcCCCCceEEEEEEEEE
Confidence 998 789999999999999987754 599998755443 457788877653
|
| >2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.53 E-value=1.7e-14 Score=140.69 Aligned_cols=99 Identities=26% Similarity=0.434 Sum_probs=83.3
Q ss_pred CcEEEEEEEEeecCC-----CCCcEEEEEECC-----eEEeecCccCCCCCeEeeEEEEEEe--cCCCceEEEEEEecCC
Q 001987 3 STRLYVYVLQGQDLL-----AKDSYVKVQIGK-----HKSKSRILKNNSNPVWNEEFVFRVH--NIDDEELVVSVFQHND 70 (985)
Q Consensus 3 ~~~L~V~V~~Ar~L~-----~~DPyv~v~l~~-----~~~kT~v~~~t~nP~wnE~f~f~v~--~~~~~~L~~~V~D~d~ 70 (985)
.+.|.|+|++|+||+ .+||||+|++.+ .+++|+++++|+||+|||+|.|.++ +.....|.|+|||+|
T Consensus 23 ~~~L~v~v~~a~~L~~~d~~g~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d- 101 (142)
T 2dmg_A 23 RNKLIVVVHACRNLIAFSEDGSDPYVRMYLLPDKRRSGRRKTHVSKKTLNPVFDQSFDFSVSLPEVQRRTLDVAVKNSG- 101 (142)
T ss_dssp TTEEEEEEEEEECCCCSSTTCCCEEEEEEEESCCCSSSCEECCCCCSCSSCEEEEEEEECCCHHHHHHCEEEEEEEECC-
T ss_pred CCEEEEEEEEeECCCCCCCCCCCeeEEEEEEcCCCCCCcccCCccCCCCCCCcCceEEEEecHHHhCcCEEEEEEEECC-
Confidence 578999999999998 279999999953 5689999999999999999999985 224569999999999
Q ss_pred CCCCCCC--CCCeeEEEEEeCccccccCCCCCCCeEEEeec
Q 001987 71 DSGLFGS--SGELMGRVRVPVSSIAAEDNHMLPPTWFSLET 109 (985)
Q Consensus 71 ~~~~~~~--~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~~ 109 (985)
+ .+ .+++||++.++|.++.... ....||+|.+
T Consensus 102 --~--~~~~~~~~iG~~~i~l~~~~~~~---~~~~W~~L~~ 135 (142)
T 2dmg_A 102 --G--FLSKDKGLLGKVLVALASEELAK---GWTQWYDLTE 135 (142)
T ss_dssp --C--SSCCSCCCCEEEEEECCCSTTTT---CBCCBCCCBC
T ss_pred --C--ccccCCcEEEEEEEecccccccc---cccceeeccC
Confidence 4 33 3579999999999987653 4678999983
|
| >3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.53 E-value=2.9e-14 Score=138.17 Aligned_cols=86 Identities=24% Similarity=0.483 Sum_probs=75.5
Q ss_pred CcEEEEEEEEeecCC------CCCcEEEEEECC-----eEEeecCccCCCCCeEeeEEEEEEec--CCCceEEEEEEecC
Q 001987 3 STRLYVYVLQGQDLL------AKDSYVKVQIGK-----HKSKSRILKNNSNPVWNEEFVFRVHN--IDDEELVVSVFQHN 69 (985)
Q Consensus 3 ~~~L~V~V~~Ar~L~------~~DPyv~v~l~~-----~~~kT~v~~~t~nP~wnE~f~f~v~~--~~~~~L~~~V~D~d 69 (985)
.+.|.|+|++|+||+ .+||||++++.+ .+++|+++++++||.|||+|.|.++. .....|.|+|||+|
T Consensus 15 ~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~l~~~~l~~~V~d~~ 94 (138)
T 3n5a_A 15 ANSIIVNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKKRNLNPIFNESFAFDIPTEKLRETTIIITVMDKD 94 (138)
T ss_dssp TTEEEEEEEEEESCCCCBTTTBCCEEEEEEEEETTEEEEEEECCCCSSCSSCEEEEEEEEECCGGGGGGEEEEEEEEECC
T ss_pred CCeEEEEEEEeeCCCCcCCCCCcCeEEEEEEEeCCCccceEeCccccCCCCCcCcceEEEECChhhcCceEEEEEEEECC
Confidence 578999999999998 689999999974 46899999999999999999999852 23478999999999
Q ss_pred CCCCCCCCCCCeeEEEEEeCcccc
Q 001987 70 DDSGLFGSSGELMGRVRVPVSSIA 93 (985)
Q Consensus 70 ~~~~~~~~~d~~lG~~~i~L~~l~ 93 (985)
. .+++++||++.++|.++.
T Consensus 95 ---~--~~~~~~lG~~~i~l~~~~ 113 (138)
T 3n5a_A 95 ---K--LSRNDVIGKIYLSWKSGP 113 (138)
T ss_dssp ---S--SSCCEEEEEEEESSSSCH
T ss_pred ---C--CCCCcEEEEEEEccccCC
Confidence 4 578999999999999754
|
| >1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=3.5e-14 Score=141.31 Aligned_cols=101 Identities=32% Similarity=0.505 Sum_probs=83.9
Q ss_pred CcEEEEEEEEeecCC------CCCcEEEEEECC-----eEEeecCccCCCCCeEeeEEEEEEec--CCCceEEEEEEecC
Q 001987 3 STRLYVYVLQGQDLL------AKDSYVKVQIGK-----HKSKSRILKNNSNPVWNEEFVFRVHN--IDDEELVVSVFQHN 69 (985)
Q Consensus 3 ~~~L~V~V~~Ar~L~------~~DPyv~v~l~~-----~~~kT~v~~~t~nP~wnE~f~f~v~~--~~~~~L~~~V~D~d 69 (985)
.+.|.|+|++|+||+ .+||||+|++.+ .+++|+++++|+||.|||+|.|.++. .....|.|+|||+|
T Consensus 24 ~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~d 103 (159)
T 1tjx_A 24 AGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDYD 103 (159)
T ss_dssp TTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEEEECC
T ss_pred CCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCceeceeeCceecCCCCCcccceEEEEcCHHHhCCcEEEEEEEECC
Confidence 578999999999998 689999999963 46899999999999999999999852 23578999999999
Q ss_pred CCCCCCCCCCCeeEEEEEeCcccccc---------CCCCCCCeEEEee
Q 001987 70 DDSGLFGSSGELMGRVRVPVSSIAAE---------DNHMLPPTWFSLE 108 (985)
Q Consensus 70 ~~~~~~~~~d~~lG~~~i~L~~l~~~---------~~~~~~~~W~~L~ 108 (985)
+ .+++++||++.++|..+..+ ..+.....||+|.
T Consensus 104 ---~--~~~~~~iG~~~i~l~~~~~~~~~w~~l~~~~~~~~~~W~~L~ 146 (159)
T 1tjx_A 104 ---K--IGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHTLQ 146 (159)
T ss_dssp ---S--SSCCEEEEEEEEETTCCHHHHHHHHHHHHSTTCCEEEEEECB
T ss_pred ---C--CCCCceEEEEEECCCCCCcHHHHHHHHHHCCCCeeeeEEECc
Confidence 4 57899999999999964211 1223567899998
|
| >2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A | Back alignment and structure |
|---|
Probab=99.52 E-value=4.4e-14 Score=141.64 Aligned_cols=101 Identities=25% Similarity=0.444 Sum_probs=84.1
Q ss_pred CcEEEEEEEEeecCC------CCCcEEEEEECC-----eEEeecCccCCCCCeEeeEEEEEEec--CCCceEEEEEEecC
Q 001987 3 STRLYVYVLQGQDLL------AKDSYVKVQIGK-----HKSKSRILKNNSNPVWNEEFVFRVHN--IDDEELVVSVFQHN 69 (985)
Q Consensus 3 ~~~L~V~V~~Ar~L~------~~DPyv~v~l~~-----~~~kT~v~~~t~nP~wnE~f~f~v~~--~~~~~L~~~V~D~d 69 (985)
.+.|.|+|++|+||+ .+||||+|++.+ .+++|+++++|+||+|||+|.|.+.. .....|.|+|||+|
T Consensus 36 ~~~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d 115 (166)
T 2cm5_A 36 QGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKHSDLAKKSLDISVWDYD 115 (166)
T ss_dssp TTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETC---CCEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEEEECC
T ss_pred CCEEEEEEEEeECCCCccCCCCCCcEEEEEEECCCCccceEeCCcccCCCCCcccceEEEEcchHhcCCCEEEEEEEECC
Confidence 578999999999998 589999999975 57999999999999999999999852 34679999999999
Q ss_pred CCCCCCCCCCCeeEEEEEeCcccccc---------CCCCCCCeEEEee
Q 001987 70 DDSGLFGSSGELMGRVRVPVSSIAAE---------DNHMLPPTWFSLE 108 (985)
Q Consensus 70 ~~~~~~~~~d~~lG~~~i~L~~l~~~---------~~~~~~~~W~~L~ 108 (985)
+ .+++++||++.++|.++... ..+.....|+.|.
T Consensus 116 ---~--~~~~~~iG~~~i~l~~~~~~~~~W~~l~~~~~~~~~~Wh~L~ 158 (166)
T 2cm5_A 116 ---I--GKSNDYIGGCQLGISAKGERLKHWYECLKNKDKKIERWHQLQ 158 (166)
T ss_dssp ---S--SSCCEEEEEEEEETTCCHHHHHHHHHHHHCTTCCEEEEEECB
T ss_pred ---C--CCCCcEEEeEEEecccCCchhHHHHHHHhCCCCcceEeeECC
Confidence 4 57899999999999986421 1223456777777
|
| >1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A | Back alignment and structure |
|---|
Probab=99.51 E-value=7.9e-14 Score=137.78 Aligned_cols=84 Identities=32% Similarity=0.515 Sum_probs=74.1
Q ss_pred CcEEEEEEEEeecCC------CCCcEEEEEEC--Ce---EEeecCccCCCCCeEeeEEEEEEec--CCCceEEEEEEecC
Q 001987 3 STRLYVYVLQGQDLL------AKDSYVKVQIG--KH---KSKSRILKNNSNPVWNEEFVFRVHN--IDDEELVVSVFQHN 69 (985)
Q Consensus 3 ~~~L~V~V~~Ar~L~------~~DPyv~v~l~--~~---~~kT~v~~~t~nP~wnE~f~f~v~~--~~~~~L~~~V~D~d 69 (985)
.+.|.|+|++|+||+ .+||||+|++. +. +++|+++++|+||.|||+|.|.+.. .....|.|+|||+|
T Consensus 29 ~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~v~V~d~d 108 (153)
T 1w15_A 29 TNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDIPCESLEEISVEFLVLDSE 108 (153)
T ss_dssp TTEEEEEEEEEESCC------CCCEEEEEEEEETTEEEEEEECCCCCSCSSEEEEEEEEEECCSSSSTTEEEEEEEEECC
T ss_pred CCEEEEEEEEeECCCCcCCCCCCCeEEEEEEEeCCeEeceEecCcccCCCCCeecceEEEECCHHHhCceEEEEEEEeCC
Confidence 578999999999999 68999999994 32 6799999999999999999999853 23578999999999
Q ss_pred CCCCCCCCCCCeeEEEEEeCcc
Q 001987 70 DDSGLFGSSGELMGRVRVPVSS 91 (985)
Q Consensus 70 ~~~~~~~~~d~~lG~~~i~L~~ 91 (985)
+ .+++++||++.++|.+
T Consensus 109 ---~--~~~~~~lG~~~i~l~~ 125 (153)
T 1w15_A 109 ---R--GSRNEVIGRLVLGATA 125 (153)
T ss_dssp ---T--TSCCEEEEEEEESTTC
T ss_pred ---C--CCCCcEEEEEEECCCC
Confidence 4 5789999999999988
|
| >1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A | Back alignment and structure |
|---|
Probab=99.49 E-value=2.4e-14 Score=172.88 Aligned_cols=105 Identities=17% Similarity=0.284 Sum_probs=96.9
Q ss_pred CCeEEEEEEEEeecCCC---CCCCCCCCcEEEEEEC---CEEEEeeeccCCCCCeEeEEEEEEeecCCCCEEEEEEEecC
Q 001987 534 DGWVLTVALVEGVNLAS---SEMTGLSDPYVVFTCN---GKTRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFD 607 (985)
Q Consensus 534 ~~g~L~V~v~~a~~L~~---~d~~g~~DPyv~v~~~---~~~~kT~~~~~tlnP~Wne~f~f~v~~~~~~~L~v~V~D~d 607 (985)
..|.|+|+|++|++|++ +|.+|.+||||+++++ .++++|+++++++||+|||+|.|.+.......|+|+|||+|
T Consensus 16 ~~g~L~V~Vi~A~nL~~~~~~D~~g~sDPYV~V~l~~~~~~k~kTkvik~tlNPvWNEtF~F~v~~~~~~~L~~~V~D~D 95 (749)
T 1cjy_A 16 YSHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDAN 95 (749)
T ss_dssp CCEEEEEEEEEEECCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTTSCCBCEEEEEECC
T ss_pred CccEEEEEEEEEECCCCccccCCCCCcCeEEEEEEecCCCCeEecceEcCCCCCeeeeEEEEEecCCCCCEEEEEEEECC
Confidence 46899999999999999 8888999999999998 46899999999999999999999976656779999999999
Q ss_pred CCCCCCCccceEEEEeeccccCcccceEEEccc
Q 001987 608 GPFDQATSLGHAEINFLKHTSTELADMWVSLEG 640 (985)
Q Consensus 608 ~~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~~ 640 (985)
. ++ |++||++.|+|.++..+...+.|++|.+
T Consensus 96 ~-~~-ddfIG~v~I~L~~L~~g~~~~~w~~L~~ 126 (749)
T 1cjy_A 96 Y-VM-DETLGTATFTVSSMKVGEKKEVPFIFNQ 126 (749)
T ss_dssp S-SS-CEEEEEECCBSTTSCTTCCCCEEEEETT
T ss_pred C-CC-CceeEEEEEEHHHcCCCCceEEEEecCC
Confidence 8 78 9999999999999988888899999985
|
| >2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.47 E-value=2e-13 Score=136.48 Aligned_cols=84 Identities=23% Similarity=0.367 Sum_probs=71.5
Q ss_pred CcEEEEEEEEeecCC---CCCcEEEEEECCeEEeecCcc-CCCCCeEeeEEEEEEecCCCceEEEEEEecCCCCCCCCCC
Q 001987 3 STRLYVYVLQGQDLL---AKDSYVKVQIGKHKSKSRILK-NNSNPVWNEEFVFRVHNIDDEELVVSVFQHNDDSGLFGSS 78 (985)
Q Consensus 3 ~~~L~V~V~~Ar~L~---~~DPyv~v~l~~~~~kT~v~~-~t~nP~wnE~f~f~v~~~~~~~L~~~V~D~d~~~~~~~~~ 78 (985)
.+.|+|+|++|++|+ .+||||+|+ .+..+|++++ +++||+|||+|.|.+. .....|.|+|||+| .++
T Consensus 13 ~~~L~V~V~~A~~l~~~g~~DPYV~v~--~~~~kt~~~~~~t~nP~WnE~f~f~v~-~~~~~L~~~V~D~d------~~~ 83 (167)
T 2cjs_A 13 LSLLCVGVKKAKFDGAQEKFNTYVTLK--VQNVESTTIAVRGSQPSWEQDFMFEIN-RLDLGLTVEVWNKG------LIW 83 (167)
T ss_dssp CCEEEEEEEEEECSSCGGGCEEEEEEE--ETTEEEECCCEESSSCEEEEEEEEECC-CTTSEEEEEEEECC------SSC
T ss_pred eEEEEEEEEEEECCCCCCCCCeEEEEE--ecceEEEEecCCCCCCCCCCEEEEEee-CCCCEEEEEEEECC------CCC
Confidence 368999999999987 799999999 3345666665 6999999999999985 45567999999999 468
Q ss_pred CCeeEEEEEeCcccccc
Q 001987 79 GELMGRVRVPVSSIAAE 95 (985)
Q Consensus 79 d~~lG~~~i~L~~l~~~ 95 (985)
|++||++.|||.++...
T Consensus 84 dd~iG~~~i~L~~l~~~ 100 (167)
T 2cjs_A 84 DTMVGTVWIPLRTIRQS 100 (167)
T ss_dssp CEEEEEEEEEGGGSCBC
T ss_pred CceEEEEEEEHHHhccc
Confidence 99999999999998754
|
| >3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B | Back alignment and structure |
|---|
Probab=99.47 E-value=1.9e-13 Score=162.43 Aligned_cols=114 Identities=22% Similarity=0.470 Sum_probs=99.3
Q ss_pred cEEEEEEEEeecCC------CCCcEEEEEECCeEEeecCccCCCCCeEeeEEEEEEecCCCceEEEEEEecCCCCCCCCC
Q 001987 4 TRLYVYVLQGQDLL------AKDSYVKVQIGKHKSKSRILKNNSNPVWNEEFVFRVHNIDDEELVVSVFQHNDDSGLFGS 77 (985)
Q Consensus 4 ~~L~V~V~~Ar~L~------~~DPyv~v~l~~~~~kT~v~~~t~nP~wnE~f~f~v~~~~~~~L~~~V~D~d~~~~~~~~ 77 (985)
+.|.|+|++|+||+ .+||||+|++++.+++|+++++|+||.|||+|.|.+..+....|+|+|||+| . .+
T Consensus 387 ~~l~v~v~~a~~L~~~d~~~~sdpyv~v~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~~~~~~l~~~v~d~d---~--~~ 461 (510)
T 3jzy_A 387 GRLMVHVIEATELKACKPNGKSNPYCEISMGSQSYTTRTIQDTLNPKWNFNCQFFIKDLYQDVLCLTLFDRD---Q--FS 461 (510)
T ss_dssp EEEEEEEEEEESCCCCSTTSCCCEEEEEEETTEEEECCCCSSCSSCEEEEEEEEEESCTTTCEEEEEEEECC---S--SS
T ss_pred ceEEEEeceeecCCCCCCCCCCCeEEEEEECCeeccCCccCCCCCCccCceEEEEecCCCCCEEEEEEEeCC---C--CC
Confidence 58999999999997 6899999999999999999999999999999999997677788999999999 4 57
Q ss_pred CCCeeEEEEEeCccccccCC-CCCCCeEEEeecCCCCCCCCccccEEEEEEEEE
Q 001987 78 SGELMGRVRVPVSSIAAEDN-HMLPPTWFSLETPKTRKFTNKDCGKILLTISLN 130 (985)
Q Consensus 78 ~d~~lG~~~i~L~~l~~~~~-~~~~~~W~~L~~~~~~~~~~~~~G~I~lsl~~~ 130 (985)
+|++||++.+||.++..+.. ..+...|++|. ....|+|.|.+.+.
T Consensus 462 ~~d~lG~~~~~l~~l~~~~~~~~~~~~~~~l~--------~~~~G~i~l~~~l~ 507 (510)
T 3jzy_A 462 PDDFLGRTEIPVAKIRTEQESKGPMTRRLLLH--------EVPTGEVWVRFDLQ 507 (510)
T ss_dssp SCCEEEEEEEEHHHHHHHHHHHCSCCEEEECB--------SSSSCEEEEEEEEE
T ss_pred CCCceEEEEEEHHHhccccCCCCceeeeecCC--------CCCCceEEEEEEEE
Confidence 89999999999999986521 12467899998 34579999988763
|
| >3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.39 E-value=1.6e-12 Score=152.62 Aligned_cols=105 Identities=23% Similarity=0.371 Sum_probs=90.7
Q ss_pred cEEEEEEEEeecCC-----CCCcEEEEEECCeEEeecCccCCCCCeEeeEEEEEEe-cCCCceEEEEEEecCCCCCCCCC
Q 001987 4 TRLYVYVLQGQDLL-----AKDSYVKVQIGKHKSKSRILKNNSNPVWNEEFVFRVH-NIDDEELVVSVFQHNDDSGLFGS 77 (985)
Q Consensus 4 ~~L~V~V~~Ar~L~-----~~DPyv~v~l~~~~~kT~v~~~t~nP~wnE~f~f~v~-~~~~~~L~~~V~D~d~~~~~~~~ 77 (985)
+.|+|+|++|+||+ ++||||+|+++++++||+++++++||+|||+|.|.+. ....+.|+|+|||+| . .+
T Consensus 394 ~~L~V~V~~A~~L~~D~~g~sDPYV~v~l~~~~~kTkvik~tlNP~Wne~f~f~~~~~~~~~~L~~~V~D~D---~--~~ 468 (540)
T 3nsj_A 394 AHLVVSNFRAEHLWGDYTTATDAYLKVFFGGQEFRTGVVWNNNNPRWTDKMDFENVLLSTGGPLRVQVWDAD---Y--GW 468 (540)
T ss_dssp EEEEEEEEEEESCCCSSCSCCCEEEEEEETTEEEECCCBCSCSSCBCCCCEEEEEEETTTCCCEEEEEEECC---S--SS
T ss_pred cEEEEEEEEccCCCcccCCCcCeEEEEEECCEeeeeeeecCCCCCCCCeEEEEEEecCCCCCEEEEEEEECC---C--CC
Confidence 58999999999998 7899999999999999999999999999999999964 457889999999999 4 57
Q ss_pred CCCeeEEEEEeCccccccCCCCCCCeEEEeecCCCCCCCCccccEEEEEEEEEe
Q 001987 78 SGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTNKDCGKILLTISLNG 131 (985)
Q Consensus 78 ~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~~G~I~lsl~~~~ 131 (985)
+|||||++.++|.. + ....|++|. .|.|.++++...
T Consensus 469 ~dD~LG~~~~~L~~---g----~~~~~~~l~-----------~G~l~~~~~~~c 504 (540)
T 3nsj_A 469 DDDLLGSCDRSPHS---G----FHEVTCELN-----------HGRVKFSYHAKC 504 (540)
T ss_dssp CCEEEEEEEECCCS---E----EEEEEEECS-----------SSEEEEEEEEEE
T ss_pred CCCEEEEEEEEeeC---C----cEEEEEEcC-----------CeEEEEEEEEEE
Confidence 88999999999873 1 245788765 599999888754
|
| >3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.37 E-value=3.6e-14 Score=166.20 Aligned_cols=99 Identities=14% Similarity=0.273 Sum_probs=14.3
Q ss_pred CeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCE-EEEeeeccCC---CCCeEeEEEEEEeecCCCCEEEEEEEe-cC--
Q 001987 535 GWVLTVALVEGVNLASSEMTGLSDPYVVFTCNGK-TRTSSVQLQT---CDPQWHDILEFDAMEEPPSVLDVEVFD-FD-- 607 (985)
Q Consensus 535 ~g~L~V~v~~a~~L~~~d~~g~~DPyv~v~~~~~-~~kT~~~~~t---lnP~Wne~f~f~v~~~~~~~L~v~V~D-~d-- 607 (985)
.+.|+|+|++|++|+++| ||||+++++++ ..||+++++| +||+|||+|+|.+.. ....|.|+||| +|
T Consensus 10 ~~~L~V~VieAk~L~~~d-----dpYv~v~l~~~~~~kT~v~~kt~~glnP~WnE~F~f~~~~-~~~~L~v~V~d~~d~~ 83 (483)
T 3bxj_A 10 DNVLKLWIIEARELPPKK-----RYYCELCLDDMLYARTTSKPRSASGDTVFWGEHFEFNNLP-AVRALRLHLYRDSDKK 83 (483)
T ss_dssp EECC--------------------------------------------------CCEECC--------------------
T ss_pred ccEEEEEEEEcCCcCCCC-----CCeEEEEECCeEEeeeeEEeCCCCCCCCccccEEEEecCC-CccEEEEEEEecCCcc
Confidence 468999999999999987 99999999876 5699999999 999999999999643 35799999999 45
Q ss_pred -CCCCCCCccceEEEEeeccccCcccceEEEccc
Q 001987 608 -GPFDQATSLGHAEINFLKHTSTELADMWVSLEG 640 (985)
Q Consensus 608 -~~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~~ 640 (985)
. +++|++||++.|++.++..+...+.|++|.+
T Consensus 84 ~~-~~~d~~lG~v~i~l~~l~~~~~~~~W~~L~~ 116 (483)
T 3bxj_A 84 RK-KDKAGYVGLVTVPVATLAGRHFTEQWYPVTL 116 (483)
T ss_dssp ------------------------CCEECC----
T ss_pred cc-CCCCceEEEEEEEHHHhcCCCCCCeEEECCC
Confidence 3 4789999999999999988888899999965
|
| >1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1; phosphoric diester hydrolase, hydrolase, lipid degradation, transducer; HET: I3P; 2.30A {Rattus norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A 1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A 1qat_A | Back alignment and structure |
|---|
Probab=99.34 E-value=6.3e-12 Score=150.98 Aligned_cols=114 Identities=25% Similarity=0.376 Sum_probs=94.6
Q ss_pred CcEEEEEEEEeecCC--------CCCcEEEEEECC-----eEEeecCccCC-CCCeEeeEEEEEEecCCCceEEEEEEec
Q 001987 3 STRLYVYVLQGQDLL--------AKDSYVKVQIGK-----HKSKSRILKNN-SNPVWNEEFVFRVHNIDDEELVVSVFQH 68 (985)
Q Consensus 3 ~~~L~V~V~~Ar~L~--------~~DPyv~v~l~~-----~~~kT~v~~~t-~nP~wnE~f~f~v~~~~~~~L~~~V~D~ 68 (985)
.+.|+|+|++|++|+ .+||||+|.+.+ .++||++++++ +||+|||+|.|.+..+....|+|+|||+
T Consensus 496 ~~~L~V~Vi~A~~L~~~d~~~~~~~DPYV~V~l~g~~~d~~~~kTkvi~~ng~NP~WnE~f~F~v~~~el~~L~~~V~D~ 575 (624)
T 1djx_A 496 PERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFEVTVPDLALVRFMVEDY 575 (624)
T ss_dssp CEEEEEEEEEEESCCCCSSCSSSCCCEEEEEEEESSGGGCEEEECCCCTTCSSSCEEEEEEEEEESCGGGCEEEEEEEEC
T ss_pred ceEEEEEEEEcCCCCcccccccCCCCcEEEEEEecCCCCcceeecccccCCCCCCccCceEEEEEecCCCCEEEEEEEEc
Confidence 568999999999998 479999999954 57999999997 9999999999998755567999999999
Q ss_pred CCCCCCCCCCCCeeEEEEEeCccccccCCCCCCCeEEEeecCCCCCCCCccccEEEEEEEEE
Q 001987 69 NDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTNKDCGKILLTISLN 130 (985)
Q Consensus 69 d~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~~G~I~lsl~~~ 130 (985)
| + .+++++||++.+||..+..+ .+|++|.+.. +. .-..|.|+|.+.+.
T Consensus 576 D---~--~~~dd~iG~~~ipl~~L~~G------~r~v~L~d~~-g~--~~~~~~L~v~i~~~ 623 (624)
T 1djx_A 576 D---S--SSKNDFIGQSTIPWNSLKQG------YRHVHLLSKN-GD--QHPSATLFVKISIQ 623 (624)
T ss_dssp C---S--SSCCEEEEEEEEEGGGBCCE------EEEEEEECTT-SC--EEEEEEEEEEEEEE
T ss_pred C---C--CCCCceeEEEEEEHHHcCCC------cEEEeCCCCC-cC--CCCceEEEEEEEEE
Confidence 9 4 67999999999999999753 4699998433 22 22467888888774
|
| >1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A | Back alignment and structure |
|---|
Probab=99.26 E-value=1.7e-11 Score=148.16 Aligned_cols=97 Identities=27% Similarity=0.434 Sum_probs=86.2
Q ss_pred CcEEEEEEEEeecCC---------CCCcEEEEEECC---eEEeecCccCCCCCeEeeEEEEEEecCCCceEEEEEEecCC
Q 001987 3 STRLYVYVLQGQDLL---------AKDSYVKVQIGK---HKSKSRILKNNSNPVWNEEFVFRVHNIDDEELVVSVFQHND 70 (985)
Q Consensus 3 ~~~L~V~V~~Ar~L~---------~~DPyv~v~l~~---~~~kT~v~~~t~nP~wnE~f~f~v~~~~~~~L~~~V~D~d~ 70 (985)
.+.|+|+|++|++|+ .+||||+|++.+ .++||+++++|+||+|||+|.|.+.......|+|+|||+|
T Consensus 17 ~g~L~V~Vi~A~nL~~~~~~D~~g~sDPYV~V~l~~~~~~k~kTkvik~tlNPvWNEtF~F~v~~~~~~~L~~~V~D~D- 95 (749)
T 1cjy_A 17 SHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDAN- 95 (749)
T ss_dssp CEEEEEEEEEEECCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTTSCCBCEEEEEECC-
T ss_pred ccEEEEEEEEEECCCCccccCCCCCcCeEEEEEEecCCCCeEecceEcCCCCCeeeeEEEEEecCCCCCEEEEEEEECC-
Confidence 468999999999997 489999999984 6799999999999999999999997667789999999999
Q ss_pred CCCCCCCCCCeeEEEEEeCccccccCCCCCCCeEEEee
Q 001987 71 DSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLE 108 (985)
Q Consensus 71 ~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~ 108 (985)
+ .+ |++||++.++|.++..+ .....|++|.
T Consensus 96 --~--~~-ddfIG~v~I~L~~L~~g---~~~~~w~~L~ 125 (749)
T 1cjy_A 96 --Y--VM-DETLGTATFTVSSMKVG---EKKEVPFIFN 125 (749)
T ss_dssp --S--SS-CEEEEEECCBSTTSCTT---CCCCEEEEET
T ss_pred --C--CC-CceeEEEEEEHHHcCCC---CceEEEEecC
Confidence 4 56 99999999999999754 3467999998
|
| >3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A | Back alignment and structure |
|---|
Probab=99.24 E-value=9.2e-12 Score=152.51 Aligned_cols=104 Identities=24% Similarity=0.440 Sum_probs=92.6
Q ss_pred CeEEEEEEEEeecCCCCCCCCCCCcEEEEEE-----CCEEEEeeeccCCCCCeEeEEEEEEeec-CCCCEEEEEEEecCC
Q 001987 535 GWVLTVALVEGVNLASSEMTGLSDPYVVFTC-----NGKTRTSSVQLQTCDPQWHDILEFDAME-EPPSVLDVEVFDFDG 608 (985)
Q Consensus 535 ~g~L~V~v~~a~~L~~~d~~g~~DPyv~v~~-----~~~~~kT~~~~~tlnP~Wne~f~f~v~~-~~~~~L~v~V~D~d~ 608 (985)
.+.|.|+|++|++|+++|.+|.+||||++++ ...+.+|+++++++||+|||+|.|.+.. +....|.|+|||+|.
T Consensus 171 ~~~L~V~v~~a~~L~~~d~~g~sDPyvkv~l~p~~~~~~k~kT~v~~~tlnP~wne~f~f~~~~~~~~~~L~v~v~d~d~ 250 (674)
T 3pfq_A 171 REVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKSSLNPEWNETFRFQLKESDKDRRLSVEIWDWDL 250 (674)
T ss_dssp SSEEEEEEEEEESCCCCSTTSSCCEEEEEEEESCSSCCSCEECCCCSSCSSCEEEEEEEEECCSTTTTCEEEEEEEECCS
T ss_pred cceeeeeeecccccCCCCcccccCcccccccccCccccccccccccccccCCCccceeeeecccCCccceeeeEEeeccc
Confidence 4689999999999999999999999999999 4567899999999999999999999643 345579999999999
Q ss_pred CCCCCCccceEEEEeeccccCcccceEEEccc
Q 001987 609 PFDQATSLGHAEINFLKHTSTELADMWVSLEG 640 (985)
Q Consensus 609 ~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~~ 640 (985)
+++||+||++.+++.++.... .+.|+.|.+
T Consensus 251 -~~~dd~iG~~~i~l~~l~~~~-~~~w~~Lls 280 (674)
T 3pfq_A 251 -TSRNDFMGSLSFGISELQKAG-VDGWFKLLS 280 (674)
T ss_dssp -SSCCEECCBCCCBTTHHHHCC-EEEEEECBC
T ss_pred -ccccccccccccchhhhccCC-cccceeecc
Confidence 799999999999999987654 588999975
|
| >3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.24 E-value=5.7e-13 Score=156.09 Aligned_cols=124 Identities=15% Similarity=0.353 Sum_probs=19.5
Q ss_pred CcEEEEEEEEeecCC-CCCcEEEEEECCe-EEeecCccCC---CCCeEeeEEEEEEecCCCceEEEEEEec-CCCCCCCC
Q 001987 3 STRLYVYVLQGQDLL-AKDSYVKVQIGKH-KSKSRILKNN---SNPVWNEEFVFRVHNIDDEELVVSVFQH-NDDSGLFG 76 (985)
Q Consensus 3 ~~~L~V~V~~Ar~L~-~~DPyv~v~l~~~-~~kT~v~~~t---~nP~wnE~f~f~v~~~~~~~L~~~V~D~-d~~~~~~~ 76 (985)
.+.|+|+|++|+||+ +.||||++++++. .+||+++++| +||.|||+|.|.+. +....|.|+|||. |...+ .
T Consensus 10 ~~~L~V~VieAk~L~~~ddpYv~v~l~~~~~~kT~v~~kt~~glnP~WnE~F~f~~~-~~~~~L~v~V~d~~d~~~~--~ 86 (483)
T 3bxj_A 10 DNVLKLWIIEARELPPKKRYYCELCLDDMLYARTTSKPRSASGDTVFWGEHFEFNNL-PAVRALRLHLYRDSDKKRK--K 86 (483)
T ss_dssp EECC---------------------------------------------CCEECC-------------------------
T ss_pred ccEEEEEEEEcCCcCCCCCCeEEEEECCeEEeeeeEEeCCCCCCCCccccEEEEecC-CCccEEEEEEEecCCcccc--C
Confidence 468999999999999 6699999999876 5799999999 99999999999963 3358999999994 41002 4
Q ss_pred CCCCeeEEEEEeCccccccCCCCCCCeEEEeecCCCCC-------------------CCCccccEEEEEEEEEec
Q 001987 77 SSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRK-------------------FTNKDCGKILLTISLNGK 132 (985)
Q Consensus 77 ~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~~~~~~~-------------------~~~~~~G~I~lsl~~~~~ 132 (985)
+++++||++.||+.++..+ .....||+|..++..+ ......|.|+|.+.|.+.
T Consensus 87 ~~d~~lG~v~i~l~~l~~~---~~~~~W~~L~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~G~lrL~v~~~~~ 158 (483)
T 3bxj_A 87 DKAGYVGLVTVPVATLAGR---HFTEQWYPVTLPTGSGGSGGMGSGGGGGSGGGSGGKGKGGCPAVRLKARYQTM 158 (483)
T ss_dssp -----------------------CCEECC--------------------------------------CEEEEEEC
T ss_pred CCCceEEEEEEEHHHhcCC---CCCCeEEECCCCCCccccccccccccccccccccccCCCCCceEEEEEEeeee
Confidence 6899999999999999865 2467899996444310 012346888888888653
|
| >3qr0_A Phospholipase C-beta (PLC-beta); PH domain, EF hand, C2 domain, TIM barrel domain, hydrolase, calcium binding, phospholipid binding; 2.00A {Sepia officinalis} PDB: 3qr1_A | Back alignment and structure |
|---|
Probab=99.14 E-value=1.1e-10 Score=142.62 Aligned_cols=112 Identities=14% Similarity=0.193 Sum_probs=91.0
Q ss_pred CeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-------EEEEeeeccC-CCCCeEeEE-EEEE-eecCCCCEEEEEEE
Q 001987 535 GWVLTVALVEGVNLASSEMTGLSDPYVVFTCNG-------KTRTSSVQLQ-TCDPQWHDI-LEFD-AMEEPPSVLDVEVF 604 (985)
Q Consensus 535 ~g~L~V~v~~a~~L~~~d~~g~~DPyv~v~~~~-------~~~kT~~~~~-tlnP~Wne~-f~f~-v~~~~~~~L~v~V~ 604 (985)
.+.|+|+|++|++|+.. .+||||+|.+.+ ++++|+++++ ++||+|||+ |.|. +..+....|+|+||
T Consensus 649 ~~~L~V~Visaq~L~~~----~~DPYV~V~l~g~p~d~~~~k~kTkvv~~nglNPvWNE~~F~F~~v~~pela~Lrf~V~ 724 (816)
T 3qr0_A 649 AGTIEIKIISAQFLSDK----QISSYVEVEMYGLPTDTVRKKFKTKIIENNGMDPYYDEKVFVFKKVVLPDLAVVRIIVS 724 (816)
T ss_dssp CEEEEEEEEEEECCCSS----CCCEEEEEEEESSGGGCEEEEEECCCBCSCSSCCBCCCCCEEEEEESCGGGCEEEEEEE
T ss_pred ceEEEEEEEEcccCCCC----CCCCeEEEEEeCCCcccccceeeeEEecCCCCCCeEcCceeEEccccCCCccEEEEEEE
Confidence 47899999999999853 689999999965 6789999875 699999998 9998 65455569999999
Q ss_pred ecCCCCCCCCccceEEEEeeccccCcccceEEEccccccCCc-ceeEEEEEeeec
Q 001987 605 DFDGPFDQATSLGHAEINFLKHTSTELADMWVSLEGKLAQSA-QSKVHLRIFLEN 658 (985)
Q Consensus 605 D~d~~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~-~g~l~l~~~ls~ 658 (985)
|+| +|+||++.|||..+..+. .+++|.+..+... .+.|.+.+.+..
T Consensus 725 D~d-----ddfiG~~~ipL~~L~~Gy---R~vpL~~~~g~~~~~atLfv~i~~~~ 771 (816)
T 3qr0_A 725 EEN-----GKFIGHRVMPLDGIKPGY---RHVPLRNESNRPLGLASVFAHIVAKD 771 (816)
T ss_dssp ETT-----SCEEEEEEEESTTCCCEE---EEEEEECTTSCEEEEEEEEEEEEEEE
T ss_pred ecC-----CCeeeEEEEEHHHcCCcc---eEEEEeCCCCCCCCceEEEEEEEEEe
Confidence 975 689999999999998764 4788887655544 367777776543
|
| >3ohm_B 1-phosphatidylinositol-4,5-bisphosphate phosphodi beta-3; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.11 E-value=1.1e-10 Score=143.28 Aligned_cols=112 Identities=16% Similarity=0.243 Sum_probs=90.7
Q ss_pred CeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC------EEEEeeeccC-CCCCeEeE-EEEEE-eecCCCCEEEEEEEe
Q 001987 535 GWVLTVALVEGVNLASSEMTGLSDPYVVFTCNG------KTRTSSVQLQ-TCDPQWHD-ILEFD-AMEEPPSVLDVEVFD 605 (985)
Q Consensus 535 ~g~L~V~v~~a~~L~~~d~~g~~DPyv~v~~~~------~~~kT~~~~~-tlnP~Wne-~f~f~-v~~~~~~~L~v~V~D 605 (985)
...|+|+|++|++|+.. .+||||+|.+.+ .+++|+++++ ++||+||| .|.|. +..+....|+|+|||
T Consensus 724 ~~~L~V~Visaq~L~~~----~~DPYV~V~l~g~p~D~~~k~kTkvi~~NglNPvWnEe~F~F~~V~~pela~Lrf~V~D 799 (885)
T 3ohm_B 724 ANALRVKVISGQFLSDR----KVGIYVEVDMFGLPVDTRRKYRTRTSQGNSFNPVWDEEPFDFPKVVLPTLASLRIAAFE 799 (885)
T ss_dssp CEEEEEEEEEEESCCSS----CCCEEEEEEEESSTTTCBCCCCCCCCSSCSSSCBCCCCCEEEEEESCGGGCEEEEEEEE
T ss_pred ceEEEEEEEEeccCccc----CCCcEEEEEEeCCCcccccceeeEEeeCCCcCCeeccceeEEeeEEcCCcCEEEEEEEc
Confidence 45899999999999853 689999999964 3579999876 69999999 69998 544555689999999
Q ss_pred cCCCCCCCCccceEEEEeeccccCcccceEEEccccccCC-cceeEEEEEeeec
Q 001987 606 FDGPFDQATSLGHAEINFLKHTSTELADMWVSLEGKLAQS-AQSKVHLRIFLEN 658 (985)
Q Consensus 606 ~d~~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~-~~g~l~l~~~ls~ 658 (985)
+| ||+||++.|||..|..+. .+++|.+..+.. ..+.|.+.+.+..
T Consensus 800 ~d-----ddfiG~~~lpL~~L~~Gy---R~vpL~~~~g~~l~~atLfv~i~~~~ 845 (885)
T 3ohm_B 800 EG-----GKFVGHRILPVSAIRSGY---HYVCLRNEANQPLCLPALLIYTEASD 845 (885)
T ss_dssp TT-----TEEEEEEEEETTTCCCEE---EEEEEECTTSCEEEEEEEEEEEEEEE
T ss_pred CC-----ccEEeeEEEEHHHcCCCc---eEEEecCCCCCccCceEEEEEEEEEe
Confidence 76 689999999999998764 468888765543 5678888887654
|
| >2zkm_X 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2; phospholipase C, phosphoinositide phospholipase, PLC-beta-2, calcium, coiled coil; 1.62A {Homo sapiens} SCOP: a.39.1.7 b.7.1.1 b.55.1.1 c.1.18.1 PDB: 2fju_B | Back alignment and structure |
|---|
Probab=99.09 E-value=1.8e-10 Score=141.52 Aligned_cols=111 Identities=16% Similarity=0.218 Sum_probs=88.1
Q ss_pred CCeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC------EEEEee-ecc-CCCCCeEeE-EEEE-EeecCCCCEEEEEE
Q 001987 534 DGWVLTVALVEGVNLASSEMTGLSDPYVVFTCNG------KTRTSS-VQL-QTCDPQWHD-ILEF-DAMEEPPSVLDVEV 603 (985)
Q Consensus 534 ~~g~L~V~v~~a~~L~~~d~~g~~DPyv~v~~~~------~~~kT~-~~~-~tlnP~Wne-~f~f-~v~~~~~~~L~v~V 603 (985)
..+.|+|+|++|++|+. +.+||||+|.+.+ ++++|+ +++ +++||+||| .|.| .+..+....|+|.|
T Consensus 676 ~~~~L~V~Visa~~L~~----~~~DPYV~V~l~g~p~d~~~k~kTk~vv~~n~~NPvWnEe~f~F~~v~~~el~~Lr~~V 751 (799)
T 2zkm_X 676 VATTLSITVISGQFLSE----RSVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPELASLRVAV 751 (799)
T ss_dssp TCEEEEEEEEEEESCCS----SCCCEEEEEEEECCTTSCCCCEECCCCSSSCCSSCBCCCCCEEEEEESSGGGCEEEEEE
T ss_pred eeeeEEEEEEeccccCc----cCCCcEEEEEEEecCCCcccceeecccccCCCCCCeeecceEEEEEEccCCccEEEEEE
Confidence 46799999999999985 4799999999943 468999 776 579999999 6999 76445556999999
Q ss_pred EecCCCCCCCCccceEEEEeeccccCcccceEEEccccccC-CcceeEEEEEee
Q 001987 604 FDFDGPFDQATSLGHAEINFLKHTSTELADMWVSLEGKLAQ-SAQSKVHLRIFL 656 (985)
Q Consensus 604 ~D~d~~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~-~~~g~l~l~~~l 656 (985)
||+| +++||++.|||..+..+. .|++|.+..+. -..+.|.+++.+
T Consensus 752 ~D~d-----~d~iG~~~ipl~~L~~G~---r~v~L~~~~g~~~~~~~Lfv~i~~ 797 (799)
T 2zkm_X 752 MEEG-----NKFLGHRIIPINALNSGY---HHLCLHSESNMPLTMPALFIFLEM 797 (799)
T ss_dssp EETT-----TEEEEEEEEEGGGBCCEE---EEEEEECTTCCEEEEEEEEEEEEE
T ss_pred EEeC-----CCccceEeeehhhcCCCc---EEEeccCCCCCCCCceEEEEEEEE
Confidence 9986 689999999999997654 58888764433 334667777654
|
| >3ohm_B 1-phosphatidylinositol-4,5-bisphosphate phosphodi beta-3; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.05 E-value=5.4e-10 Score=137.15 Aligned_cols=111 Identities=26% Similarity=0.378 Sum_probs=89.6
Q ss_pred CcEEEEEEEEeecCC--CCCcEEEEEECC------eEEeecCccC-CCCCeEee-EEEEE-EecCCCceEEEEEEecCCC
Q 001987 3 STRLYVYVLQGQDLL--AKDSYVKVQIGK------HKSKSRILKN-NSNPVWNE-EFVFR-VHNIDDEELVVSVFQHNDD 71 (985)
Q Consensus 3 ~~~L~V~V~~Ar~L~--~~DPyv~v~l~~------~~~kT~v~~~-t~nP~wnE-~f~f~-v~~~~~~~L~~~V~D~d~~ 71 (985)
...|.|+|++|++|+ .+||||+|.+.+ .++||+++++ ++||+||| +|.|. |..+....|+|+|||+|
T Consensus 724 ~~~L~V~Visaq~L~~~~~DPYV~V~l~g~p~D~~~k~kTkvi~~NglNPvWnEe~F~F~~V~~pela~Lrf~V~D~d-- 801 (885)
T 3ohm_B 724 ANALRVKVISGQFLSDRKVGIYVEVDMFGLPVDTRRKYRTRTSQGNSFNPVWDEEPFDFPKVVLPTLASLRIAAFEEG-- 801 (885)
T ss_dssp CEEEEEEEEEEESCCSSCCCEEEEEEEESSTTTCBCCCCCCCCSSCSSSCBCCCCCEEEEEESCGGGCEEEEEEEETT--
T ss_pred ceEEEEEEEEeccCcccCCCcEEEEEEeCCCcccccceeeEEeeCCCcCCeeccceeEEeeEEcCCcCEEEEEEEcCC--
Confidence 358999999999999 899999999964 3579999976 69999999 69998 76566678999999977
Q ss_pred CCCCCCCCCeeEEEEEeCccccccCCCCCCCeEEEeecCCCCCCCCccccEEEEEEEEEe
Q 001987 72 SGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTNKDCGKILLTISLNG 131 (985)
Q Consensus 72 ~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~~G~I~lsl~~~~ 131 (985)
++|||++.+||..|..+ .++++|.+..+ . .-..|.|.|.+.+..
T Consensus 802 -------ddfiG~~~lpL~~L~~G------yR~vpL~~~~g-~--~l~~atLfv~i~~~~ 845 (885)
T 3ohm_B 802 -------GKFVGHRILPVSAIRSG------YHYVCLRNEAN-Q--PLCLPALLIYTEASD 845 (885)
T ss_dssp -------TEEEEEEEEETTTCCCE------EEEEEEECTTS-C--EEEEEEEEEEEEEEE
T ss_pred -------ccEEeeEEEEHHHcCCC------ceEEEecCCCC-C--ccCceEEEEEEEEEe
Confidence 37999999999999754 45788884322 1 235688888888863
|
| >3qr0_A Phospholipase C-beta (PLC-beta); PH domain, EF hand, C2 domain, TIM barrel domain, hydrolase, calcium binding, phospholipid binding; 2.00A {Sepia officinalis} PDB: 3qr1_A | Back alignment and structure |
|---|
Probab=99.05 E-value=8.3e-10 Score=134.90 Aligned_cols=111 Identities=23% Similarity=0.369 Sum_probs=90.0
Q ss_pred CcEEEEEEEEeecCC--CCCcEEEEEECC-------eEEeecCccC-CCCCeEeeE-EEEE-EecCCCceEEEEEEecCC
Q 001987 3 STRLYVYVLQGQDLL--AKDSYVKVQIGK-------HKSKSRILKN-NSNPVWNEE-FVFR-VHNIDDEELVVSVFQHND 70 (985)
Q Consensus 3 ~~~L~V~V~~Ar~L~--~~DPyv~v~l~~-------~~~kT~v~~~-t~nP~wnE~-f~f~-v~~~~~~~L~~~V~D~d~ 70 (985)
.+.|.|+|++|++|+ .+||||+|.+.+ .++||+++++ ++||+|||+ |.|. |..+....|+|.|||++
T Consensus 649 ~~~L~V~Visaq~L~~~~~DPYV~V~l~g~p~d~~~~k~kTkvv~~nglNPvWNE~~F~F~~v~~pela~Lrf~V~D~d- 727 (816)
T 3qr0_A 649 AGTIEIKIISAQFLSDKQISSYVEVEMYGLPTDTVRKKFKTKIIENNGMDPYYDEKVFVFKKVVLPDLAVVRIIVSEEN- 727 (816)
T ss_dssp CEEEEEEEEEEECCCSSCCCEEEEEEEESSGGGCEEEEEECCCBCSCSSCCBCCCCCEEEEEESCGGGCEEEEEEEETT-
T ss_pred ceEEEEEEEEcccCCCCCCCCeEEEEEeCCCcccccceeeeEEecCCCCCCeEcCceeEEccccCCCccEEEEEEEecC-
Confidence 368999999999999 799999999964 5689999886 699999998 9998 76556679999999976
Q ss_pred CCCCCCCCCCeeEEEEEeCccccccCCCCCCCeEEEeecCCCCCCCCccccEEEEEEEEEe
Q 001987 71 DSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTNKDCGKILLTISLNG 131 (985)
Q Consensus 71 ~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~~G~I~lsl~~~~ 131 (985)
++|||++.+||..|..+ .++++|.+. .+. .-..+.|.+.+.+..
T Consensus 728 --------ddfiG~~~ipL~~L~~G------yR~vpL~~~-~g~--~~~~atLfv~i~~~~ 771 (816)
T 3qr0_A 728 --------GKFIGHRVMPLDGIKPG------YRHVPLRNE-SNR--PLGLASVFAHIVAKD 771 (816)
T ss_dssp --------SCEEEEEEEESTTCCCE------EEEEEEECT-TSC--EEEEEEEEEEEEEEE
T ss_pred --------CCeeeEEEEEHHHcCCc------ceEEEEeCC-CCC--CCCceEEEEEEEEEe
Confidence 37999999999999854 467899843 322 234578888887754
|
| >2zkm_X 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2; phospholipase C, phosphoinositide phospholipase, PLC-beta-2, calcium, coiled coil; 1.62A {Homo sapiens} SCOP: a.39.1.7 b.7.1.1 b.55.1.1 c.1.18.1 PDB: 2fju_B | Back alignment and structure |
|---|
Probab=99.01 E-value=1.1e-09 Score=134.72 Aligned_cols=110 Identities=22% Similarity=0.424 Sum_probs=87.0
Q ss_pred CCcEEEEEEEEeecCC--CCCcEEEEEECC------eEEeec-CccC-CCCCeEee-EEEE-EEecCCCceEEEEEEecC
Q 001987 2 VSTRLYVYVLQGQDLL--AKDSYVKVQIGK------HKSKSR-ILKN-NSNPVWNE-EFVF-RVHNIDDEELVVSVFQHN 69 (985)
Q Consensus 2 ~~~~L~V~V~~Ar~L~--~~DPyv~v~l~~------~~~kT~-v~~~-t~nP~wnE-~f~f-~v~~~~~~~L~~~V~D~d 69 (985)
+.+.|.|+|++|++|+ .+||||+|.+.+ +++||+ ++++ ++||+||| +|.| .|..+....|+|.|||+|
T Consensus 676 ~~~~L~V~Visa~~L~~~~~DPYV~V~l~g~p~d~~~k~kTk~vv~~n~~NPvWnEe~f~F~~v~~~el~~Lr~~V~D~d 755 (799)
T 2zkm_X 676 VATTLSITVISGQFLSERSVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPELASLRVAVMEEG 755 (799)
T ss_dssp TCEEEEEEEEEEESCCSSCCCEEEEEEEECCTTSCCCCEECCCCSSSCCSSCBCCCCCEEEEEESSGGGCEEEEEEEETT
T ss_pred eeeeEEEEEEeccccCccCCCcEEEEEEEecCCCcccceeecccccCCCCCCeeecceEEEEEEccCCccEEEEEEEEeC
Confidence 3568999999999999 899999999942 357999 7764 79999999 6999 786555668999999987
Q ss_pred CCCCCCCCCCCeeEEEEEeCccccccCCCCCCCeEEEeecCCCCCCCCccccEEEEEEEE
Q 001987 70 DDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTNKDCGKILLTISL 129 (985)
Q Consensus 70 ~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~~G~I~lsl~~ 129 (985)
++|||++.+||..+..+ .+|++|.+..+ . .-..+.|+|.+.+
T Consensus 756 ---------~d~iG~~~ipl~~L~~G------~r~v~L~~~~g-~--~~~~~~Lfv~i~~ 797 (799)
T 2zkm_X 756 ---------NKFLGHRIIPINALNSG------YHHLCLHSESN-M--PLTMPALFIFLEM 797 (799)
T ss_dssp ---------TEEEEEEEEEGGGBCCE------EEEEEEECTTC-C--EEEEEEEEEEEEE
T ss_pred ---------CCccceEeeehhhcCCC------cEEEeccCCCC-C--CCCceEEEEEEEE
Confidence 37999999999999753 56899983322 1 2235677777766
|
| >3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A | Back alignment and structure |
|---|
Probab=98.94 E-value=1.1e-09 Score=134.12 Aligned_cols=98 Identities=29% Similarity=0.540 Sum_probs=84.9
Q ss_pred CcEEEEEEEEeecCC------CCCcEEEEEEC-----CeEEeecCccCCCCCeEeeEEEEEEe-cCCCceEEEEEEecCC
Q 001987 3 STRLYVYVLQGQDLL------AKDSYVKVQIG-----KHKSKSRILKNNSNPVWNEEFVFRVH-NIDDEELVVSVFQHND 70 (985)
Q Consensus 3 ~~~L~V~V~~Ar~L~------~~DPyv~v~l~-----~~~~kT~v~~~t~nP~wnE~f~f~v~-~~~~~~L~~~V~D~d~ 70 (985)
.+.|.|+|++|++|+ .+||||++++. ..+.+|+++++|+||.|||+|.|.+. ......|.|+|||+|
T Consensus 171 ~~~L~V~v~~a~~L~~~d~~g~sDPyvkv~l~p~~~~~~k~kT~v~~~tlnP~wne~f~f~~~~~~~~~~L~v~v~d~d- 249 (674)
T 3pfq_A 171 REVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKSSLNPEWNETFRFQLKESDKDRRLSVEIWDWD- 249 (674)
T ss_dssp SSEEEEEEEEEESCCCCSTTSSCCEEEEEEEESCSSCCSCEECCCCSSCSSCEEEEEEEEECCSTTTTCEEEEEEEECC-
T ss_pred cceeeeeeecccccCCCCcccccCcccccccccCccccccccccccccccCCCccceeeeecccCCccceeeeEEeecc-
Confidence 568999999999998 78999999993 45689999999999999999999985 344567999999999
Q ss_pred CCCCCCCCCCeeEEEEEeCccccccCCCCCCCeEEEeec
Q 001987 71 DSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLET 109 (985)
Q Consensus 71 ~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~~ 109 (985)
+ .+++++||++.++|.++...+ ...|+.|..
T Consensus 250 --~--~~~dd~iG~~~i~l~~l~~~~----~~~w~~Lls 280 (674)
T 3pfq_A 250 --L--TSRNDFMGSLSFGISELQKAG----VDGWFKLLS 280 (674)
T ss_dssp --S--SSCCEECCBCCCBTTHHHHCC----EEEEEECBC
T ss_pred --c--ccccccccccccchhhhccCC----cccceeecc
Confidence 4 689999999999999998652 478999983
|
| >1yrk_A NPKC-delta, protein kinase C, delta type; C2 domain, protein binding; HET: PTR; 1.70A {Homo sapiens} PDB: 1bdy_A | Back alignment and structure |
|---|
Probab=98.84 E-value=2.7e-08 Score=91.30 Aligned_cols=108 Identities=12% Similarity=0.207 Sum_probs=82.3
Q ss_pred CeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCEE----EEe-eeccCCCCCeEeEEEEEEeecCCCCEEEEEEEecCCC
Q 001987 535 GWVLTVALVEGVNLASSEMTGLSDPYVVFTCNGKT----RTS-SVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGP 609 (985)
Q Consensus 535 ~g~L~V~v~~a~~L~~~d~~g~~DPyv~v~~~~~~----~kT-~~~~~tlnP~Wne~f~f~v~~~~~~~L~v~V~D~d~~ 609 (985)
...|+|.+.++.--+-.......||||.+.+.... .+| ..+++|..|+|||.|.-.+ .....|.|.|++ |.
T Consensus 5 ~~flRi~~~~~~~~~~~~~~~~lDPy~aV~vdE~~~~e~g~t~~~K~kT~~P~Wne~Fd~~V--~~Gr~l~i~Vfh-~a- 80 (126)
T 1yrk_A 5 APFLRIAFNSYELGSLQAEDEANQPFCAVKMKEALSTERGKTLVQKKPTMYPEWKSTFDAHI--YEGRVIQIVLMR-AA- 80 (126)
T ss_dssp CCEEEEEEEEEECSSCCCSSSSCCCEEEEEEEEEEEETTEEEEECCSCCBCCCTTCEEEEEC--CTTCEEEEEEEE-ET-
T ss_pred CccEEeeeccccccccCCccccCCceEEEEeeeeEEcccceeecccCCCCCcCccceEEeee--eCCEEEEEEEEc-CC-
Confidence 35788888776642222233478999999997543 144 6788999999999999884 556899999996 33
Q ss_pred CCCCCccceEEEEeeccc-----cCcccceEEEccccccCCcceeEEEEEe
Q 001987 610 FDQATSLGHAEINFLKHT-----STELADMWVSLEGKLAQSAQSKVHLRIF 655 (985)
Q Consensus 610 ~~~dd~lG~~~i~l~~l~-----~~~~~~~w~~L~~~~~~~~~g~l~l~~~ 655 (985)
.+|++.++|++.++. .+...+.|++|++ +|+|++.+-
T Consensus 81 ---~~fvAn~tV~~edL~~~c~~~~g~~e~WvdLeP------~Gkl~~~i~ 122 (126)
T 1yrk_A 81 ---EEPVSEVTVGVSVLAERCKKNNGKAEFWLDLQP------QAKVLMSVQ 122 (126)
T ss_dssp ---TEEEEEEEEEHHHHHHHHHTTTTEEEEEEECBS------SCEEEEEEE
T ss_pred ---CCeeeEEEEEHHHHHhhhccCCCceEEEEeccc------CcEEEEEEE
Confidence 289999999999986 3456789999994 788888774
|
| >2enj_A NPKC-theta, protein kinase C theta type; beta-sandwich, phosphotyrosine binding, TCR, T-cell, diacylglycerol, phorbol ester, structural genomics; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.77 E-value=4.3e-08 Score=91.09 Aligned_cols=110 Identities=11% Similarity=0.179 Sum_probs=84.5
Q ss_pred CeEEEEEEEEeecCCCCC-CCCCCCcEEEEEECCEE----EEe-eeccCCCCCeEeEEEEEEeecCCCCEEEEEEEecCC
Q 001987 535 GWVLTVALVEGVNLASSE-MTGLSDPYVVFTCNGKT----RTS-SVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDG 608 (985)
Q Consensus 535 ~g~L~V~v~~a~~L~~~d-~~g~~DPyv~v~~~~~~----~kT-~~~~~tlnP~Wne~f~f~v~~~~~~~L~v~V~D~d~ 608 (985)
.+.|+|.+.++.-.+-.. .....||||.|.+.... .+| ..+++|..|+|||.|.-.+ .....|.|.||+ |.
T Consensus 9 ~~flRi~l~~~~~~~~~~~~~~~lDPY~aV~VdE~~~te~gqtl~~KkkT~~P~Wne~Fd~~V--~~Gr~l~i~Vfh-~a 85 (138)
T 2enj_A 9 SPFLRIGLSNFDCGSCQSCQGEAVNPYCAVLVKEYVESENGQMYIQKKPTMYPPWDSTFDAHI--NKGRVMQIIVKG-KN 85 (138)
T ss_dssp CCCEEEEEEEEECCCCCCSCCCCCCCEEEEEEEEEEEETTEEEEEEEEEEECCCSSSEEEECC--CSSCEEEEEEEC-SS
T ss_pred CcceEEEeeccccCCCCCcccccCCceEEEEeeeeeeccCceeecccCCCCCccccceEeeeE--ECCeEEEEEEEc-CC
Confidence 457899987776544322 13368999999997442 456 6678899999999999884 556899999995 33
Q ss_pred CCCCCCccceEEEEeeccc-----cCcccceEEEccccccCCcceeEEEEEeee
Q 001987 609 PFDQATSLGHAEINFLKHT-----STELADMWVSLEGKLAQSAQSKVHLRIFLE 657 (985)
Q Consensus 609 ~~~~dd~lG~~~i~l~~l~-----~~~~~~~w~~L~~~~~~~~~g~l~l~~~ls 657 (985)
.+|++.++|++.+|. .+...+.|+.|++ +|+|++.+-+.
T Consensus 86 ----~~fVAn~tV~~edL~~~ck~~~g~~e~WvdLeP------~Gkl~v~i~~~ 129 (138)
T 2enj_A 86 ----VDLISETTVELYSLAERCRKNNGKTEIWLELKP------QGRMLMNARYF 129 (138)
T ss_dssp ----CSCCEEEEEESHHHHHHHHHTTTCEEEEEECBS------SCEEEEEEEEC
T ss_pred ----CCeeeEEEEEHHHHHhhhccCCCceEEEEeccc------CcEEEEEEEEE
Confidence 289999999999987 3456799999994 78888888553
|
| >1yrk_A NPKC-delta, protein kinase C, delta type; C2 domain, protein binding; HET: PTR; 1.70A {Homo sapiens} PDB: 1bdy_A | Back alignment and structure |
|---|
Probab=98.67 E-value=8.6e-08 Score=87.97 Aligned_cols=105 Identities=19% Similarity=0.306 Sum_probs=84.3
Q ss_pred cEEEEEEEEeec--CC----CCCcEEEEEECCe----EEee-cCccCCCCCeEeeEEEEEEecCCCceEEEEEEecCCCC
Q 001987 4 TRLYVYVLQGQD--LL----AKDSYVKVQIGKH----KSKS-RILKNNSNPVWNEEFVFRVHNIDDEELVVSVFQHNDDS 72 (985)
Q Consensus 4 ~~L~V~V~~Ar~--L~----~~DPyv~v~l~~~----~~kT-~v~~~t~nP~wnE~f~f~v~~~~~~~L~~~V~D~d~~~ 72 (985)
..|+|.+.++.- |+ ..||||.|.+... .++| ..+++|..|.|||+|.-.+ ...+.|.|.|++..
T Consensus 6 ~flRi~~~~~~~~~~~~~~~~lDPy~aV~vdE~~~~e~g~t~~~K~kT~~P~Wne~Fd~~V--~~Gr~l~i~Vfh~a--- 80 (126)
T 1yrk_A 6 PFLRIAFNSYELGSLQAEDEANQPFCAVKMKEALSTERGKTLVQKKPTMYPEWKSTFDAHI--YEGRVIQIVLMRAA--- 80 (126)
T ss_dssp CEEEEEEEEEECSSCCCSSSSCCCEEEEEEEEEEEETTEEEEECCSCCBCCCTTCEEEEEC--CTTCEEEEEEEEET---
T ss_pred ccEEeeeccccccccCCccccCCceEEEEeeeeEEcccceeecccCCCCCcCccceEEeee--eCCEEEEEEEEcCC---
Confidence 468888866653 33 5899999999743 3476 7788899999999999888 68899999999766
Q ss_pred CCCCCCCCeeEEEEEeCcccccc---CCCCCCCeEEEeecCCCCCCCCccccEEEEEEEEE
Q 001987 73 GLFGSSGELMGRVRVPVSSIAAE---DNHMLPPTWFSLETPKTRKFTNKDCGKILLTISLN 130 (985)
Q Consensus 73 ~~~~~~d~~lG~~~i~L~~l~~~---~~~~~~~~W~~L~~~~~~~~~~~~~G~I~lsl~~~ 130 (985)
. +|++.+.|++.+|... .+ ....-|+.|+ +.|+|++.+.|.
T Consensus 81 ---~---~fvAn~tV~~edL~~~c~~~~-g~~e~WvdLe----------P~Gkl~~~i~~~ 124 (126)
T 1yrk_A 81 ---E---EPVSEVTVGVSVLAERCKKNN-GKAEFWLDLQ----------PQAKVLMSVQYF 124 (126)
T ss_dssp ---T---EEEEEEEEEHHHHHHHHHTTT-TEEEEEEECB----------SSCEEEEEEEEE
T ss_pred ---C---CeeeEEEEEHHHHHhhhccCC-CceEEEEecc----------cCcEEEEEEEEe
Confidence 2 8999999999999854 22 3457899998 479999999885
|
| >2enj_A NPKC-theta, protein kinase C theta type; beta-sandwich, phosphotyrosine binding, TCR, T-cell, diacylglycerol, phorbol ester, structural genomics; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.64 E-value=5.7e-08 Score=90.25 Aligned_cols=105 Identities=18% Similarity=0.234 Sum_probs=85.0
Q ss_pred cEEEEEEEEeecCC-------CCCcEEEEEECCe----EEee-cCccCCCCCeEeeEEEEEEecCCCceEEEEEEecCCC
Q 001987 4 TRLYVYVLQGQDLL-------AKDSYVKVQIGKH----KSKS-RILKNNSNPVWNEEFVFRVHNIDDEELVVSVFQHNDD 71 (985)
Q Consensus 4 ~~L~V~V~~Ar~L~-------~~DPyv~v~l~~~----~~kT-~v~~~t~nP~wnE~f~f~v~~~~~~~L~~~V~D~d~~ 71 (985)
..|+|.+.++.-.+ ..||||.|.+... .++| ..+++|..|+|||+|.-.| ...+.|.|.|++..
T Consensus 10 ~flRi~l~~~~~~~~~~~~~~~lDPY~aV~VdE~~~te~gqtl~~KkkT~~P~Wne~Fd~~V--~~Gr~l~i~Vfh~a-- 85 (138)
T 2enj_A 10 PFLRIGLSNFDCGSCQSCQGEAVNPYCAVLVKEYVESENGQMYIQKKPTMYPPWDSTFDAHI--NKGRVMQIIVKGKN-- 85 (138)
T ss_dssp CCEEEEEEEEECCCCCCSCCCCCCCEEEEEEEEEEEETTEEEEEEEEEEECCCSSSEEEECC--CSSCEEEEEEECSS--
T ss_pred cceEEEeeccccCCCCCcccccCCceEEEEeeeeeeccCceeecccCCCCCccccceEeeeE--ECCeEEEEEEEcCC--
Confidence 46888887766422 5899999999742 3788 7788899999999999887 68899999999655
Q ss_pred CCCCCCCCCeeEEEEEeCcccccc---CCCCCCCeEEEeecCCCCCCCCccccEEEEEEEEE
Q 001987 72 SGLFGSSGELMGRVRVPVSSIAAE---DNHMLPPTWFSLETPKTRKFTNKDCGKILLTISLN 130 (985)
Q Consensus 72 ~~~~~~~d~~lG~~~i~L~~l~~~---~~~~~~~~W~~L~~~~~~~~~~~~~G~I~lsl~~~ 130 (985)
. +|++.+.|++.+|... .+ ....-|+.|+ +.|+|++.+.|.
T Consensus 86 ----~---~fVAn~tV~~edL~~~ck~~~-g~~e~WvdLe----------P~Gkl~v~i~~~ 129 (138)
T 2enj_A 86 ----V---DLISETTVELYSLAERCRKNN-GKTEIWLELK----------PQGRMLMNARYF 129 (138)
T ss_dssp ----C---SCCEEEEEESHHHHHHHHHTT-TCEEEEEECB----------SSCEEEEEEEEC
T ss_pred ----C---CeeeEEEEEHHHHHhhhccCC-CceEEEEecc----------cCcEEEEEEEEE
Confidence 2 8999999999999854 22 3457899998 479999999994
|
| >1em2_A MLN64 protein; beta barrel, lipid binding protein; HET: TAR; 2.20A {Homo sapiens} SCOP: d.129.3.2 | Back alignment and structure |
|---|
Probab=93.57 E-value=0.76 Score=47.37 Aligned_cols=148 Identities=11% Similarity=-0.011 Sum_probs=90.3
Q ss_pred eeeecCChHHHH-hccCCCchhHHHHHHcCCcceEEcccc-cCCCCceeEEEEEEeccc--cCCCceeeeeEEEEeeccC
Q 001987 818 NAELPISVKALM-EMFDGGKLEHQVMEKSGCHNYVTTPWD-LVKPGVCERHLSYRFNRH--VSIFGGEVTCTQQKSPLAS 893 (985)
Q Consensus 818 ~~~~p~~~~~~~-~lf~~s~f~~~~~~~~~~~~~~~~~W~-~~~~~~~~R~~sy~~~~~--~~~~~~~~~~~q~~~~~~~ 893 (985)
..+++++++.+| .+|.+....... |-.+...+ .+.-+..+ .|.|...+| +.|...+=....+.....+
T Consensus 71 ~~~v~~~~~~v~~~~~~d~~~r~~W-------d~~~~~~~vle~~~~~t-~I~~~~~~p~~~~~~~~RDfv~~r~~~~~~ 142 (229)
T 1em2_A 71 KTFLPCPAELVYQEVILQPERMVLW-------NKTVTACQILQRVEDNT-LISYDVSAGAAGGVVSPRDFVNVRRIERRR 142 (229)
T ss_dssp EEEESSCHHHHHHHTTTCHHHHTTT-------CTTEEEEEEEEEETTTE-EEEEEEECCBTTTTBCCEEEEEEEEEEECS
T ss_pred EEEecCCHHHHHHHHHhCccchhhc-------ccccceEEEEEecCCCe-EEEEEEecCcCCCCcCCCeeEEEEEEEEcC
Confidence 456799999999 577544322222 11111111 01111112 356665444 4444444344433333334
Q ss_pred CCcEEEEEEEeeCCCCCC-CeEEEE---EEEEEEecCCCCCccEEEEEEEEEEEeeeeehhhhhhchHHHHHHHHHHHHH
Q 001987 894 GEGWIVNEVMSLHDVPFD-DHFRVH---FRYEIEKSPLAHNACKCAIYIGISWLKSTKFQQRITQNITEKFTHRLKEMIE 969 (985)
Q Consensus 894 ~~~~vv~~~~~~~dVPyg-d~F~v~---~ry~i~~~~~~~~~~~l~v~~~v~~~k~t~~K~~Ie~~~~~g~~~~~~~~~~ 969 (985)
+..+++..++.-+++|-. ++=+++ ..|.|++.+.++++|++.....++..+| +=+.++++.+..++-+.++.|-+
T Consensus 143 ~~~vi~~~Sv~~~~~P~~~~~VR~~~~~~g~~i~p~~~~~~~t~vt~~~~~Dp~G~-iP~~l~n~~~~~~~~~~~~~Lr~ 221 (229)
T 1em2_A 143 DRYLSSGIATSHSAKPPTHKYVRGENGPGGMIVLKSASNPRVCTFVWILNTDLKGR-LPRYLIHQSLAATMFEFAFHLRQ 221 (229)
T ss_dssp SEEEEEEEECCCTTSCCCTTSEECEECSEEEEEEECSSCTTCEEEEEEECEECCSS-SCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEEecccCCCCCCCCCCEeeeecccEEEEEecCCCCCcEEEEEEEEECCCCC-CCHHHHHHHHHHHHHHHHHHHHH
Confidence 556666778888888854 555666 5799999876568999999999999886 44777888887777777777766
Q ss_pred HHHHH
Q 001987 970 LVERE 974 (985)
Q Consensus 970 ~~~~~ 974 (985)
.++++
T Consensus 222 ~~~~~ 226 (229)
T 1em2_A 222 RISEL 226 (229)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 66554
|
| >2r55_A STAR-related lipid transfer protein 5; alpha and beta protein, cholesterol binding, structural GENO structural genomics consortium, SGC; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=90.46 E-value=5.4 Score=40.85 Aligned_cols=149 Identities=8% Similarity=-0.051 Sum_probs=88.0
Q ss_pred eeeecCChHHHHhcc--CCCchhHHHHHHcCCcceEEcccccCCCCceeEEEEEEeccccC--CCceeeeeEEEEe-ecc
Q 001987 818 NAELPISVKALMEMF--DGGKLEHQVMEKSGCHNYVTTPWDLVKPGVCERHLSYRFNRHVS--IFGGEVTCTQQKS-PLA 892 (985)
Q Consensus 818 ~~~~p~~~~~~~~lf--~~s~f~~~~~~~~~~~~~~~~~W~~~~~~~~~R~~sy~~~~~~~--~~~~~~~~~q~~~-~~~ 892 (985)
..+++++++++++++ .+........... .+..+=.- .+.. -.|.|....+.. +...+=....+.. ...
T Consensus 72 ~~~v~~~~~~v~~~l~~~d~~~r~~Wd~~~--~~~~vle~--i~~~---~~i~~~~~~~~~~~~v~~RDfv~~r~~~~~~ 144 (231)
T 2r55_A 72 EGIVYGTLEEVWDCVKPAVGGLRVKWDENV--TGFEIIQS--ITDT---LCVSRTSTPSAAMKLISPRDFVDLVLVKRYE 144 (231)
T ss_dssp EEEESSCHHHHHHHHCC--CCSHHHHCTTC--SEEEEEEE--CSSS---EEEEEEECCCBTTTTBCCEEEEEEEEEEECT
T ss_pred EEEECCCHHHHHHHHHhhCcchhhhhcccc--ceeEEEEE--cCCC---EEEEEEEeccccCCccCCCeEEEEEEEEEcC
Confidence 446799999999976 3555444443322 22221111 1111 234555544432 2333333332222 233
Q ss_pred CCCcEEEEEEEeeCCCCC-CCeEEEEE---EEEEEecCCCCCccEEEEEEEEEEEeeeeehhhhhhchHHHHHHHHHHHH
Q 001987 893 SGEGWIVNEVMSLHDVPF-DDHFRVHF---RYEIEKSPLAHNACKCAIYIGISWLKSTKFQQRITQNITEKFTHRLKEMI 968 (985)
Q Consensus 893 ~~~~~vv~~~~~~~dVPy-gd~F~v~~---ry~i~~~~~~~~~~~l~v~~~v~~~k~t~~K~~Ie~~~~~g~~~~~~~~~ 968 (985)
++..+++..++..|++|- .++-+++. .|.|++.+.++++|++.....++..+| .=+.++.+.+..++-..++.|-
T Consensus 145 ~g~~vi~~~Sv~~~~~P~~~~~VR~~~~~~g~~i~p~~~~~~~t~vt~~~~~Dp~G~-iP~~lvn~~~~~~~~~~~~~Lr 223 (231)
T 2r55_A 145 DGTISSNATHVEHPLCPPKPGFVRGFNHPCGCFCEPLPGEPTKTNLVTFFHTDLSGY-LPQNVVDSFFPRSMTRFYANLQ 223 (231)
T ss_dssp TSCEEEEEEECCCTTSCCCTTCEEEEECSEEEEEEECC--CCCEEEEEEECEECCSS-CCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEEEeccCCCCCCCCCCEEEEEEeeEEEEEEeCCCCCcEEEEEEEEeCCCCC-ccHHHHHHHHhHhHHHHHHHHH
Confidence 444556788888888875 46667765 588998875458999999999998876 3377888887777777777766
Q ss_pred HHHHHH
Q 001987 969 ELVERE 974 (985)
Q Consensus 969 ~~~~~~ 974 (985)
+.++++
T Consensus 224 ~~~~~~ 229 (231)
T 2r55_A 224 KAVKQF 229 (231)
T ss_dssp HHHHGG
T ss_pred HHHHHh
Confidence 666553
|
| >2pcs_A Conserved protein; structural genomics, unknown function, ligand binding, PSI-2 structure initiative; HET: UNL; 2.40A {Geobacillus kaustophilus} SCOP: d.129.3.10 | Back alignment and structure |
|---|
Probab=90.09 E-value=9.9 Score=36.13 Aligned_cols=141 Identities=7% Similarity=-0.003 Sum_probs=75.8
Q ss_pred eEeeeecCChHHHHhccCCCchhHHHHHHcCCcceEEcccccCCCCceeEEEEEEeccccCCCceeeeeEEEEeeccCCC
Q 001987 816 VYNAELPISVKALMEMFDGGKLEHQVMEKSGCHNYVTTPWDLVKPGVCERHLSYRFNRHVSIFGGEVTCTQQKSPLASGE 895 (985)
Q Consensus 816 ~~~~~~p~~~~~~~~lf~~s~f~~~~~~~~~~~~~~~~~W~~~~~~~~~R~~sy~~~~~~~~~~~~~~~~q~~~~~~~~~ 895 (985)
..+..++++++++|.++.|-.-..++. -++.++... ..+.....+++ .+++.......+-+........
T Consensus 6 ~~~~~i~ap~e~Vw~~l~D~e~~~~w~--p~~~~~~~~-----~~~~~~~~~~~----~~g~~~~~~~~~~~~~~~~~~~ 74 (162)
T 2pcs_A 6 NGSIELKGTVEEVWSKLMDPSILSKCI--MGCKSLELI-----GEDKYKADLQI----GIAAVKGKYDAIIEVTDIKPPY 74 (162)
T ss_dssp EEEEEEESCHHHHHHHHTCHHHHHHHS--TTEEEEEEE-----ETTEEEEEEEE----CCGGGCEEEEEEEEEEEEETTT
T ss_pred eeEEEecCCHHHHHHHhcCHHHHHhhC--CCceEeEEe-----CCCeEEEEEEE----EeeeEEEEEEEEEEEEecCCCc
Confidence 346688999999999997665443333 233333221 12233222222 3444333332221222233445
Q ss_pred cEEEEEEEeeCCCCCCCeEEEEEEEEEEecCCCCCccEEEEEEEEEEEee--eeehhhhhhchHHHHHHHHHHHHHHHHH
Q 001987 896 GWIVNEVMSLHDVPFDDHFRVHFRYEIEKSPLAHNACKCAIYIGISWLKS--TKFQQRITQNITEKFTHRLKEMIELVER 973 (985)
Q Consensus 896 ~~vv~~~~~~~dVPygd~F~v~~ry~i~~~~~~~~~~~l~v~~~v~~~k~--t~~K~~Ie~~~~~g~~~~~~~~~~~~~~ 973 (985)
.+++.....-. +..+.....|.++.... +.|+|...+.+.+.+. .++..++.+-+ +....++++.|++
T Consensus 75 ~~~~~~~~~~~----~~~~~~~~~~~l~~~~~--~gT~v~~~~~~~~~g~l~~~~~~l~~~~~----~~~~~~~~~~lk~ 144 (162)
T 2pcs_A 75 HYKLLVNGEGG----PGFVNAEGVIDLTPIND--ECTQLTYTYSAEVGGKVAAIGQRMLGGVA----KLLISDFFKKIQK 144 (162)
T ss_dssp EEEEEEEEEET----TEEEEEEEEEEEEESSS--SEEEEEEEEEEEEESGGGGGCHHHHHHHH----HHHHHHHHHHHHH
T ss_pred EEEEEEEecCC----CccEEEEEEEEEEecCC--CcEEEEEEEEEEECCCHHHhhHHHHHHHH----HHHHHHHHHHHHH
Confidence 66555443311 33456788899988665 6899999999888652 34444444433 3334555555555
Q ss_pred HHhh
Q 001987 974 EILF 977 (985)
Q Consensus 974 ~i~~ 977 (985)
.+..
T Consensus 145 ~~e~ 148 (162)
T 2pcs_A 145 EIAK 148 (162)
T ss_dssp HHHH
T ss_pred Hhcc
Confidence 5543
|
| >1jss_A Stard4, cholesterol-regulated start protein 4; start domain, structural genomics, PSI, protein structure initiative; 2.20A {Mus musculus} SCOP: d.129.3.2 | Back alignment and structure |
|---|
Probab=88.72 E-value=3.3 Score=42.34 Aligned_cols=146 Identities=5% Similarity=-0.129 Sum_probs=81.0
Q ss_pred eeeecCChHHHHhccCCCchhHHHHHHcCCcceEEcccccCCCCceeEEEEEEecccc-CC-CceeeeeEEEEeeccCCC
Q 001987 818 NAELPISVKALMEMFDGGKLEHQVMEKSGCHNYVTTPWDLVKPGVCERHLSYRFNRHV-SI-FGGEVTCTQQKSPLASGE 895 (985)
Q Consensus 818 ~~~~p~~~~~~~~lf~~s~f~~~~~~~~~~~~~~~~~W~~~~~~~~~R~~sy~~~~~~-~~-~~~~~~~~q~~~~~~~~~ 895 (985)
..+++++++++++++.+......... ++....- .+.-+..+ .|.|...++. .+ .+.+=....+.....++.
T Consensus 72 ~~~v~~~~~~v~~~l~d~~~r~~Wd~-----~~~~~~v-le~id~~~-~I~y~~~~~~~~~~v~~RDfv~~r~~~~~~~~ 144 (224)
T 1jss_A 72 QGVMDDVVNNVIDHIRPGPWRLDWDR-----LMTSLDV-LEHFEENC-CVMRYTTAGQLLNIISPREFVDFSYTVGYEEG 144 (224)
T ss_dssp EEEESSCHHHHHHHHSSSTTHHHHCS-----SEEEEEE-EEECSTTE-EEEEEEECCBTTTTBCCEEEEEEEEEEEETTE
T ss_pred EEEEeCCHHHHHHHHhCccccccccc-----ceeeEEE-EEEcCCCe-EEEEEEcccccCCCCCCCeEEEEEEEEEcCCe
Confidence 45779999999997643332222211 1111111 11112223 3445443332 22 233333333333333333
Q ss_pred cEEEEEEEeeCCCCCCCeEEEE---EEEEEEecCCCCCccEEEEEEEEEEEeeeeehhhhhhchHHHHHHHHHHHHHHHH
Q 001987 896 GWIVNEVMSLHDVPFDDHFRVH---FRYEIEKSPLAHNACKCAIYIGISWLKSTKFQQRITQNITEKFTHRLKEMIELVE 972 (985)
Q Consensus 896 ~~vv~~~~~~~dVPygd~F~v~---~ry~i~~~~~~~~~~~l~v~~~v~~~k~t~~K~~Ie~~~~~g~~~~~~~~~~~~~ 972 (985)
.+++..++..|++|- ++-+++ ..|.|++.++++++|+|.-...++..+| +=+..+.+.+-+++.+.++.+-+.++
T Consensus 145 ~vi~~~Sv~hp~~~~-g~VR~~~~~~g~~i~p~~~~~~~t~vt~~~~~Dp~G~-iP~~lvn~~~~~~~~~~~~~Lr~~~~ 222 (224)
T 1jss_A 145 LLSCGVSVEWSETRP-EFVRGYNHPCGWFCVPLKDSPSQSLLTGYIQTDLRGM-IPQSAVDTAMASTLANFYSDLRKGLR 222 (224)
T ss_dssp EEEEEEECCCCCCCT-TSEECEECSEEEEEEEETTEEEEEEEEEEECEECCSC-CCHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred EEEEEeeeecCCCCC-CCEEEEecccEEEEEEcCCCCCceEEEEEEEeCCCCC-ccHHHHHHHHHHhHHHHHHHHHHHHh
Confidence 445556666677764 677776 5699999877556899999998998874 23667777666666666655554443
|
| >3p0l_A Steroidogenic acute regulatory protein, mitochond; structural genomics consortium, SGC, start domain, cholester transport, cholesterol; 3.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=87.34 E-value=3.2 Score=42.35 Aligned_cols=146 Identities=9% Similarity=0.013 Sum_probs=85.0
Q ss_pred eeeecCChHHHHhc-cCCCchhHHHHHHcCCcceEEcccc-cCCCCceeEEEEEEeccc--cCCCceeeeeEEEEeeccC
Q 001987 818 NAELPISVKALMEM-FDGGKLEHQVMEKSGCHNYVTTPWD-LVKPGVCERHLSYRFNRH--VSIFGGEVTCTQQKSPLAS 893 (985)
Q Consensus 818 ~~~~p~~~~~~~~l-f~~s~f~~~~~~~~~~~~~~~~~W~-~~~~~~~~R~~sy~~~~~--~~~~~~~~~~~q~~~~~~~ 893 (985)
..++++++++++++ +.+......... .+...+ .+.-+..+ .|.|...++ ..|...+=..........+
T Consensus 60 ~~~v~~~~~~v~~~l~~d~~~r~~Wd~-------~~~~~~vle~~~~~t-~I~y~~~~~~~~~~v~~RDfv~~r~~~~~~ 131 (221)
T 3p0l_A 60 EVVVDQPMERLYEELVERMEAMGEWNP-------NVKEIKVLQKIGKDT-FITHELAAEAAGNLVGPRDFVSVRCAKRRG 131 (221)
T ss_dssp EEEESSCHHHHHHHHTTTGGGTTTSCT-------TCSEEEEEEECSSSE-EEEEEEECC---CCSCCEEEEEEEEEEECS
T ss_pred EEEEcCCHHHHHHHHHhccchhhhcCc-------chheEEEEEecCCCe-EEEEEeeccccCCccCCceEEEEEEEEEcC
Confidence 34679999999995 455432222211 111111 11111123 355654222 3344433333322222334
Q ss_pred CCcEEEEEEEeeCCCCC-CCeEEEE---EEEEEEecCCCCCccEEEEEEEEEEEeeeeehhhhhhchHHHHHHHHHHHHH
Q 001987 894 GEGWIVNEVMSLHDVPF-DDHFRVH---FRYEIEKSPLAHNACKCAIYIGISWLKSTKFQQRITQNITEKFTHRLKEMIE 969 (985)
Q Consensus 894 ~~~~vv~~~~~~~dVPy-gd~F~v~---~ry~i~~~~~~~~~~~l~v~~~v~~~k~t~~K~~Ie~~~~~g~~~~~~~~~~ 969 (985)
+..+++..++.-|++|- .++-+++ ..|.|++.+.++++|++.....++..+| .=+..+.+.+.+++-+.++.|-+
T Consensus 132 ~~~vi~~~Sv~~~~~P~~~g~VR~~~~~~g~~i~p~~~~~~~t~vt~~~~~Dp~G~-iP~~lvn~~~~~~~~~~~~~Lr~ 210 (221)
T 3p0l_A 132 STCVLAGMATDFGNMPEQKGVIRAEHGPTCMVLHPLAGSPSKTKLTWLLSIDLKGW-LPKSIINQVLSQTQVDFANHLRK 210 (221)
T ss_dssp SCEEECCEECCCTTSCCCTTSEECEECSCEEEEEEETTEEEEEEEEEEECEECCSS-CCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEEEeccCCCCCCCCCeEEEeccceEEEEEECCCCCCcEEEEEEEEecCCCC-CCHHHHHHHHHHHHHHHHHHHHH
Confidence 55555667777788886 5666666 4699999987445899999999998887 55888888877777665555554
Q ss_pred HHH
Q 001987 970 LVE 972 (985)
Q Consensus 970 ~~~ 972 (985)
.++
T Consensus 211 ~~~ 213 (221)
T 3p0l_A 211 RLE 213 (221)
T ss_dssp HTC
T ss_pred HHh
Confidence 443
|
| >2wxf_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit delta isoform; transferase, phosphoprotein, isoform-specific inhibitors; HET: 039; 1.90A {Mus musculus} PDB: 2wxg_A* 2wxh_A* 2wxi_A* 2wxj_A* 2wxk_A* 2wxl_A* 2wxm_A* 2wxn_A* 2wxo_A* 2wxp_A* 2wxq_A* 2wxr_A 2x38_A* | Back alignment and structure |
|---|
Probab=87.04 E-value=3.1 Score=51.70 Aligned_cols=92 Identities=11% Similarity=0.198 Sum_probs=62.1
Q ss_pred CCcEEEEEEEEeecCC---CCCcEEEEEE--CCe----EEeecCccCCCCCeEeeEEEEEEe---cCCCceEEEEEEecC
Q 001987 2 VSTRLYVYVLQGQDLL---AKDSYVKVQI--GKH----KSKSRILKNNSNPVWNEEFVFRVH---NIDDEELVVSVFQHN 69 (985)
Q Consensus 2 ~~~~L~V~V~~Ar~L~---~~DPyv~v~l--~~~----~~kT~v~~~t~nP~wnE~f~f~v~---~~~~~~L~~~V~D~d 69 (985)
++..++|+|..+.++. ..+-||.+.+ +++ ...|..+.-..+|.|||.+.|++. -|....|.|+||+..
T Consensus 215 ~~~~f~i~i~~~~~~~~~~~~~~~V~~~l~~g~~~l~~~~~T~~~~~~~~~~Wne~l~f~i~i~dLPr~a~L~~ti~~~~ 294 (940)
T 2wxf_A 215 LEQPFSIELIEGRKVNADERMKLVVQAGLFHGNEMLCKTVSSSEVNVCSEPVWKQRLEFDISVCDLPRMARLCFALYAVV 294 (940)
T ss_dssp CCSEEEEEEEEEECCCC---CEEEEEEEEEETTEESSCCEECCCEESCSSCEEEEEEEEEEEGGGCCTTCEEEEEEEEEC
T ss_pred cCCceEEEEEEecccCCCCCceEEEEEEEEECCEEccCceecccccCCCCcccceEEEcccccccCCcccEEEEEEEEec
Confidence 4678999999999998 4566777666 332 244555554778999999999986 478899999999975
Q ss_pred CC--C----C-CCCCCCCeeEEEEEeCcccc
Q 001987 70 DD--S----G-LFGSSGELMGRVRVPVSSIA 93 (985)
Q Consensus 70 ~~--~----~-~~~~~d~~lG~~~i~L~~l~ 93 (985)
.. . + -.-..+..||-+.++|-+-.
T Consensus 295 ~~~~~~~~~~~~~~~~~~~lg~~~~~lFd~~ 325 (940)
T 2wxf_A 295 EKAKKARSTKKKSKKADCPIAWANLMLFDYK 325 (940)
T ss_dssp ----------------CEEEEEEEEESBCTT
T ss_pred CCccCccccccccccccceEEEEeeeEECCc
Confidence 10 0 0 00002347888888776543
|
| >1icx_A Protein LLR18A, LLPR10.1A; 7-stranded beta sheet, C-terminal helix, allergen; 1.95A {Lupinus luteus} SCOP: d.129.3.1 PDB: 1ifv_A | Back alignment and structure |
|---|
Probab=86.92 E-value=11 Score=36.02 Aligned_cols=145 Identities=8% Similarity=0.029 Sum_probs=82.9
Q ss_pred EeeeecCChHHHHhccC-CCc-hhHHHHHHcCCcceEEcccccCCCCceeEEEEEEeccccCCCceeeeeEEEEeeccCC
Q 001987 817 YNAELPISVKALMEMFD-GGK-LEHQVMEKSGCHNYVTTPWDLVKPGVCERHLSYRFNRHVSIFGGEVTCTQQKSPLASG 894 (985)
Q Consensus 817 ~~~~~p~~~~~~~~lf~-~s~-f~~~~~~~~~~~~~~~~~W~~~~~~~~~R~~sy~~~~~~~~~~~~~~~~q~~~~~~~~ 894 (985)
.+.+++++++++|.+|. +.+ ...+++..-...++..+.| ..+..|.++|. . +.....+.|. ....++.
T Consensus 7 ~e~~i~a~a~kvw~~~~~d~~~~~pk~~~~i~s~~i~eG~g----~~Gsir~~~~~---~-G~~~~~~kEr--l~~~D~~ 76 (155)
T 1icx_A 7 NEQSSTVAPAKLYKALTKDSDEIVPKVIEPIQSVEIVEGNG----GPGTIKKIIAI---H-DGHTSFVLHK--LDAIDEA 76 (155)
T ss_dssp EEEEESSCHHHHHHHHTTTHHHHHHHHSTTEEEEEEEESSS----STTCEEEEEEE---S-SSSEEEEEEE--EEEEEGG
T ss_pred EEEEecCCHHHHHHHHhcCcchhcchhhhhccEEEEEecCC----CCCeEEEEEEe---c-CCcceeEEEE--EEEEecc
Confidence 35578999999999885 654 4455664444334455655 23678999996 2 3222223333 3333333
Q ss_pred CcEEEEEEEeeCCCCCCCeEEEEEEEEEEecCCCCCccEEEEEEEEEEEeeeeehhhhhhchHHHHHHHHHHHHHHHHHH
Q 001987 895 EGWIVNEVMSLHDVPFDDHFRVHFRYEIEKSPLAHNACKCAIYIGISWLKSTKFQQRITQNITEKFTHRLKEMIELVERE 974 (985)
Q Consensus 895 ~~~vv~~~~~~~dVPygd~F~v~~ry~i~~~~~~~~~~~l~v~~~v~~~k~t~~K~~Ie~~~~~g~~~~~~~~~~~~~~~ 974 (985)
+.. +.-++.=.|+.-..+=.....+.+.+.+. +.| .|.|.++|.+..-. ..--.....++.+..+++.+.+|
T Consensus 77 ~~~-~~y~iieGd~~~~~~~~~~~~~~v~~~~~--~gs--~v~w~~~y~~~~~~---~~~~~~~~~~~~~~~~~k~ie~y 148 (155)
T 1icx_A 77 NLT-YNYSIIGGEGLDESLEKISYESKILPGPD--GGS--IGKINVKFHTKGDV---LSETVRDQAKFKGLGLFKAIEGY 148 (155)
T ss_dssp GTE-EEEEEEEETTSCTTEEEEEEEEEEEECGG--GCE--EEEEEEEEEESSSS---CCHHHHTTHHHHHHHHHHHHHHH
T ss_pred CCE-EEEEEEecCCCccceEEEEEEEEEEecCC--CCE--EEEEEEEEEECCCC---CCHHHHHHHHHHHHHHHHHHHHH
Confidence 332 22222222443223444666777877554 455 56788888764322 22222233478888999999999
Q ss_pred Hhhcc
Q 001987 975 ILFAT 979 (985)
Q Consensus 975 i~~~~ 979 (985)
+..+.
T Consensus 149 ll~~p 153 (155)
T 1icx_A 149 VLAHP 153 (155)
T ss_dssp HHHCT
T ss_pred HHhCC
Confidence 87653
|
| >2wxf_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit delta isoform; transferase, phosphoprotein, isoform-specific inhibitors; HET: 039; 1.90A {Mus musculus} PDB: 2wxg_A* 2wxh_A* 2wxi_A* 2wxj_A* 2wxk_A* 2wxl_A* 2wxm_A* 2wxn_A* 2wxo_A* 2wxp_A* 2wxq_A* 2wxr_A 2x38_A* | Back alignment and structure |
|---|
Probab=86.85 E-value=3.2 Score=51.52 Aligned_cols=88 Identities=17% Similarity=0.206 Sum_probs=59.1
Q ss_pred CeEEEEEEEEeecCCCCCCCCCCCcEEEEEE--CCE----EEEeeeccCCCCCeEeEEEEEEee---cCCCCEEEEEEEe
Q 001987 535 GWVLTVALVEGVNLASSEMTGLSDPYVVFTC--NGK----TRTSSVQLQTCDPQWHDILEFDAM---EEPPSVLDVEVFD 605 (985)
Q Consensus 535 ~g~L~V~v~~a~~L~~~d~~g~~DPyv~v~~--~~~----~~kT~~~~~tlnP~Wne~f~f~v~---~~~~~~L~v~V~D 605 (985)
...++|+|..+.++... ..++-||.+.+ |++ ...|+.+.-..+|.|||.++|++. -+....|.|+||+
T Consensus 216 ~~~f~i~i~~~~~~~~~---~~~~~~V~~~l~~g~~~l~~~~~T~~~~~~~~~~Wne~l~f~i~i~dLPr~a~L~~ti~~ 292 (940)
T 2wxf_A 216 EQPFSIELIEGRKVNAD---ERMKLVVQAGLFHGNEMLCKTVSSSEVNVCSEPVWKQRLEFDISVCDLPRMARLCFALYA 292 (940)
T ss_dssp CSEEEEEEEEEECCCC------CEEEEEEEEEETTEESSCCEECCCEESCSSCEEEEEEEEEEEGGGCCTTCEEEEEEEE
T ss_pred CCceEEEEEEecccCCC---CCceEEEEEEEEECCEEccCceecccccCCCCcccceEEEcccccccCCcccEEEEEEEE
Confidence 35899999999999764 35677877665 554 345555555788999999999863 2446799999999
Q ss_pred cCCCC-C----------CCCccceEEEEeec
Q 001987 606 FDGPF-D----------QATSLGHAEINFLK 625 (985)
Q Consensus 606 ~d~~~-~----------~dd~lG~~~i~l~~ 625 (985)
..... + .+..||.+.++|-+
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~lg~~~~~lFd 323 (940)
T 2wxf_A 293 VVEKAKKARSTKKKSKKADCPIAWANLMLFD 323 (940)
T ss_dssp EC----------------CEEEEEEEEESBC
T ss_pred ecCCccCccccccccccccceEEEEeeeEEC
Confidence 64310 1 12366777777655
|
| >2qim_A PR10.2B; trans-zeatin, cytokinin, plant hormones, plant protein, PR-1 protein, pathogenesis-related protein, allergen; HET: ZEA; 1.35A {Lupinus luteus} PDB: 3e85_A* 1xdf_A* 2k7h_A | Back alignment and structure |
|---|
Probab=85.29 E-value=18 Score=34.58 Aligned_cols=146 Identities=8% Similarity=-0.051 Sum_probs=82.2
Q ss_pred EeeeecCChHHHHhccC-CCc-hhHHHHHHcCCcceEEcccccCCCCceeEEEEEEeccccCCCceeeeeEEEEeeccCC
Q 001987 817 YNAELPISVKALMEMFD-GGK-LEHQVMEKSGCHNYVTTPWDLVKPGVCERHLSYRFNRHVSIFGGEVTCTQQKSPLASG 894 (985)
Q Consensus 817 ~~~~~p~~~~~~~~lf~-~s~-f~~~~~~~~~~~~~~~~~W~~~~~~~~~R~~sy~~~~~~~~~~~~~~~~q~~~~~~~~ 894 (985)
.+.+++++++++|.+|. +.+ ...+++..-...++..+.| ..+..|.++|. + +.....+.|+ ....++.
T Consensus 8 ~e~~i~a~a~kvw~~~~~d~~~~~pk~~~~i~s~~i~eGdg----g~Gsir~~~~~---~-g~~~~~~kEr--l~~~D~~ 77 (158)
T 2qim_A 8 DEYTSTIAPAKLYKALVTDADIIIPKAVETIQSVEIVEGNG----GPGTIKKLTFI---E-GGESKYVLHK--IEAIDEA 77 (158)
T ss_dssp EEEEESSCHHHHHHHHTTTHHHHHHHHCTTEEEEEEEESSS----STTCEEEEEEE---E-TTEEEEEEEE--EEEEEGG
T ss_pred EEEEecCCHHHHHHHHhcCccchhhhHHhhCcEEEEEecCC----CCCeEEEEEEc---C-CCcceeEEEE--EEEEecC
Confidence 35578999999999885 654 4455554444334455655 23678999996 2 2221223333 3323333
Q ss_pred CcEEEEEEEeeCCCCCCCeEEEEEEEEEEecCCCCCccEEEEEEEEEEEeeeeehhhhhhchHHHHHHHHHHHHHHHHHH
Q 001987 895 EGWIVNEVMSLHDVPFDDHFRVHFRYEIEKSPLAHNACKCAIYIGISWLKSTKFQQRITQNITEKFTHRLKEMIELVERE 974 (985)
Q Consensus 895 ~~~vv~~~~~~~dVPygd~F~v~~ry~i~~~~~~~~~~~l~v~~~v~~~k~t~~K~~Ie~~~~~g~~~~~~~~~~~~~~~ 974 (985)
+..+--+.+. .|+.-..+=.....+.+.+.+. +.| .|.|.++|.+..-. ...-......++.+..+++.+++|
T Consensus 78 ~~~~~y~iie-G~~~~~~~~~~~~~~~v~~~~~--~gs--~v~wt~~y~~~~~~--~~~~~~~~~~~~~~~~~~k~ie~y 150 (158)
T 2qim_A 78 NLGYNYSIVG-GVGLPDTIEKISFETKLVEGAN--GGS--IGKVTIKIETKGDA--QPNEEEGKAAKARGDAFFKAIESY 150 (158)
T ss_dssp GTEEEEEEEE-ESSCCCSEEEEEEEEEEEECST--TCE--EEEEEEEEEESTTC--CCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEEEe-ccCCccceEEEEEEEEEEecCC--CCE--EEEEEEEEEECCCC--CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 3322222222 2432223444666778887655 455 56778888764211 111112233478889999999999
Q ss_pred Hhhcc
Q 001987 975 ILFAT 979 (985)
Q Consensus 975 i~~~~ 979 (985)
+..+.
T Consensus 151 ll~~p 155 (158)
T 2qim_A 151 LSAHP 155 (158)
T ss_dssp HHHCS
T ss_pred HHhCc
Confidence 87663
|
| >1tw0_A Pathogenesis-related class 10 protein SPE-16; seven antiparallel beta-sheet, plant protein; 2.20A {Pachyrhizus erosus} SCOP: d.129.3.1 PDB: 1txc_A* | Back alignment and structure |
|---|
Probab=83.78 E-value=21 Score=34.15 Aligned_cols=146 Identities=5% Similarity=-0.019 Sum_probs=82.6
Q ss_pred EeeeecCChHHHHhccC-CCc-hhHHHHHHcCCcceEEcccccCCCCceeEEEEEEeccccCCCceeeeeEEEEeeccCC
Q 001987 817 YNAELPISVKALMEMFD-GGK-LEHQVMEKSGCHNYVTTPWDLVKPGVCERHLSYRFNRHVSIFGGEVTCTQQKSPLASG 894 (985)
Q Consensus 817 ~~~~~p~~~~~~~~lf~-~s~-f~~~~~~~~~~~~~~~~~W~~~~~~~~~R~~sy~~~~~~~~~~~~~~~~q~~~~~~~~ 894 (985)
.+.+++++++++|.+|. +.+ ...+++..-...++..+.| ..+..|.++|. . +.+...+ +++....++.
T Consensus 7 ~e~~i~a~a~kvw~~~~~d~~~~~pk~~~~i~s~~i~eG~g----~~Gsir~~~~~---~-G~~~~~~--kErl~~~D~~ 76 (157)
T 1tw0_A 7 DETSSSVAPAKLYKALTKDSDTIAQKIDGPIQSIELVEGNG----GVGTIKKITAN---E-GDKTSFV--LQKVDAIDEA 76 (157)
T ss_dssp EEEEESSCHHHHHHHHHHTGGGGGGGSCSSEEEEEEEESSS----STTCEEEEEEE---E-TTEEEEE--EEEEEEEETT
T ss_pred EEEEecCCHHHHHHHHhcCcchhhhhHHhhccEEEEEeCCC----CCCeEEEEEee---C-CCccceE--EEEEEEEecc
Confidence 35578999999999874 554 4455554333334445555 23678999996 2 2221223 3333334344
Q ss_pred CcEEEEEEEeeCCCCCCCeEEEEEEEEEEecCCCCCccEEEEEEEEEEEeeeeehhhhhhchHHHHHHHHHHHHHHHHHH
Q 001987 895 EGWIVNEVMSLHDVPFDDHFRVHFRYEIEKSPLAHNACKCAIYIGISWLKSTKFQQRITQNITEKFTHRLKEMIELVERE 974 (985)
Q Consensus 895 ~~~vv~~~~~~~dVPygd~F~v~~ry~i~~~~~~~~~~~l~v~~~v~~~k~t~~K~~Ie~~~~~g~~~~~~~~~~~~~~~ 974 (985)
+.. +.-++.=.|+.-..+=.....+.+.+.+. +.| .|.|.++|.+..-. ...-......++.+..+++.+++|
T Consensus 77 ~~~-~~y~iieGd~~~~~~~~~~~~~~v~~~~~--~gs--~v~w~~~y~~~~~~--~~~~~~~~~~~~~~~~~~k~ie~y 149 (157)
T 1tw0_A 77 NLG-YDYSIVGGTGLPESLEKLSFETKVVAGSG--GGS--ISKVTLKFHTKGDA--PLSDAVRDDALAKGAGFFKAIEGY 149 (157)
T ss_dssp TTE-EEEEEEECTTSCTTEEEEEEEEEEEECSS--SSE--EEEEEEEEEESTTC--CCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCE-EEEEEEecCCCccceEEEEEEEEEEecCC--CCE--EEEEEEEEEECCCC--CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 433 33333333443234445667778887654 455 56778888764211 111112233478889999999999
Q ss_pred Hhhcc
Q 001987 975 ILFAT 979 (985)
Q Consensus 975 i~~~~ 979 (985)
+..+.
T Consensus 150 ll~~p 154 (157)
T 1tw0_A 150 VLANP 154 (157)
T ss_dssp HHHCG
T ss_pred HHhCc
Confidence 97763
|
| >3hhm_A Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha isoform; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_A 2rd0_A 4a55_A* 2enq_A | Back alignment and structure |
|---|
Probab=81.91 E-value=7.8 Score=48.56 Aligned_cols=90 Identities=14% Similarity=0.281 Sum_probs=61.0
Q ss_pred CeEEEEEEEEeecCCCCCCCCCCCcEEEEEE--CCE----EEEeeeccCCCCCeEeEEEEEEee---cCCCCEEEEEEEe
Q 001987 535 GWVLTVALVEGVNLASSEMTGLSDPYVVFTC--NGK----TRTSSVQLQTCDPQWHDILEFDAM---EEPPSVLDVEVFD 605 (985)
Q Consensus 535 ~g~L~V~v~~a~~L~~~d~~g~~DPyv~v~~--~~~----~~kT~~~~~tlnP~Wne~f~f~v~---~~~~~~L~v~V~D 605 (985)
...++|+|+.+.++.... ....+-||.+.+ |++ ..+|+.+. ..+|.|||.++|++. -+....|.|+||+
T Consensus 354 ~~~f~v~i~~~~~~n~~~-~~~~~~~V~~~l~hG~~~L~~~~~T~~~~-~~~~~Wne~l~f~i~i~dLPr~arL~~tl~~ 431 (1091)
T 3hhm_A 354 NSALRIKILCATYVNVNI-RDIDKIYVRTGIYHGGEPLCDNVNTQRVP-CSNPRWNEWLNYDIYIPDLPRAARLCLSICS 431 (1091)
T ss_dssp CSEEEEEEEEESCCCCCC-SSCCCCCEEEEEESSSCSSCCEECCCCCC-TTSCEEEEEEEEEEEGGGCCTTCEEEEEECC
T ss_pred CCCEEEEEEEecCCCCCc-cccceEEEEEEEEECCEEccCceeccccC-CCCCCCCeeEEecCccccCChhcEEEEEEEE
Confidence 347899999999886432 345677888777 433 34454443 568899999999963 2456799999998
Q ss_pred cCCCC---CCCCccceEEEEeecc
Q 001987 606 FDGPF---DQATSLGHAEINFLKH 626 (985)
Q Consensus 606 ~d~~~---~~dd~lG~~~i~l~~l 626 (985)
....- ..+..||.+.++|-+-
T Consensus 432 ~~~~~~~~~~~~~lg~~n~~lfd~ 455 (1091)
T 3hhm_A 432 VKGRKGAKEEHCPLAWGNINLFDY 455 (1091)
T ss_dssp CCCCC-------CCEEEEEESBCT
T ss_pred ecCccCcccccceeEEeeeeeEcc
Confidence 66410 1235788888888763
|
| >1e09_A PRU AV 1; allergen, major cherry allergen, pathogenesis-related protein, heteronuclear structure; NMR {Prunus avium} SCOP: d.129.3.1 PDB: 1h2o_A 2lpx_A | Back alignment and structure |
|---|
Probab=80.60 E-value=23 Score=33.90 Aligned_cols=143 Identities=9% Similarity=0.073 Sum_probs=79.5
Q ss_pred EeeeecCChHHHHhccC-CCc-hhHHHHH-HcCCcceEEcccccCCCCceeEEEEEEeccccCCCceeeeeEEEEeeccC
Q 001987 817 YNAELPISVKALMEMFD-GGK-LEHQVME-KSGCHNYVTTPWDLVKPGVCERHLSYRFNRHVSIFGGEVTCTQQKSPLAS 893 (985)
Q Consensus 817 ~~~~~p~~~~~~~~lf~-~s~-f~~~~~~-~~~~~~~~~~~W~~~~~~~~~R~~sy~~~~~~~~~~~~~~~~q~~~~~~~ 893 (985)
.+.+++++++++|.+|. +.. ...+++- .-...++..+.| ..+..|.++|. + +...+.+.| +....++
T Consensus 7 ~e~~i~ap~~~vw~~~~~d~~~~~pk~~P~~i~s~~~~eGdg----g~Gsvr~~~~~---~-G~~~~~~kE--rl~~~D~ 76 (159)
T 1e09_A 7 SEFTSEIPPPRLFKAFVLDADNLVPKIAPQAIKHSEILEGDG----GPGTIKKITFG---E-GSQYGYVKH--KIDSIDK 76 (159)
T ss_dssp EEEEESSCHHHHHHHHTTTHHHHHHHHCTTTEEEEEEEESSS----STTCEEEEEEC---C-SSSCEEEEE--EEEEEET
T ss_pred EEEEecCCHHHHHHHHhcCccccchhhChhhccEEEEEeCCC----CCceEEEEEec---C-CCCceEEEE--EEEEEcC
Confidence 35578999999999885 543 4445552 333334445655 23678999995 2 222123333 3333333
Q ss_pred CCcEEEEEEEeeCCC---CCCCeEEEEEEEEEEecCCCCCccEEEEEEEEEEEeeeeehhhhhhchHHHHHHHHHHHHHH
Q 001987 894 GEGWIVNEVMSLHDV---PFDDHFRVHFRYEIEKSPLAHNACKCAIYIGISWLKSTKFQQRITQNITEKFTHRLKEMIEL 970 (985)
Q Consensus 894 ~~~~vv~~~~~~~dV---Pygd~F~v~~ry~i~~~~~~~~~~~l~v~~~v~~~k~t~~K~~Ie~~~~~g~~~~~~~~~~~ 970 (985)
.+. .+.-++.=.|+ ||-+ ....+.+.+.+. +.| .|.|.++|.+..-. .+.--..+..++.+..+++.
T Consensus 77 ~~~-~~~y~iieG~~~~~~~~~---~~~~~~v~~~~~--~gs--~v~wt~~y~~~~~~--~~~~~~~~~~~~~~~~~~k~ 146 (159)
T 1e09_A 77 ENY-SYSYTLIEGDALGDTLEK---ISYETKLVASPS--GGS--IIKSTSHYHTKGNV--EIKEEHVKAGKEKASNLFKL 146 (159)
T ss_dssp TTT-EEEEEECCCTTTGGGEEE---EEEEEEECCCTT--SSE--EEEEEEEEEECSSC--CCCHHHHHHHHHHHHHHHHH
T ss_pred CCC-EEEEEEEecccCcccceE---EEEEEEEEecCC--CCE--EEEEEEEEEECCCC--CCCHHHHHHHHHHHHHHHHH
Confidence 333 33333333344 4433 455566665444 555 56778888764211 11111222447888999999
Q ss_pred HHHHHhhcc
Q 001987 971 VEREILFAT 979 (985)
Q Consensus 971 ~~~~i~~~~ 979 (985)
+++|+..+.
T Consensus 147 ie~yll~~~ 155 (159)
T 1e09_A 147 IETYLKGHP 155 (159)
T ss_dssp HHHHHHHCT
T ss_pred HHHHHHhCh
Confidence 999997653
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 985 | ||||
| d2bwqa1 | 125 | b.7.1.2 (A:729-853) Regulating synaptic membrane e | 4e-15 | |
| d2bwqa1 | 125 | b.7.1.2 (A:729-853) Regulating synaptic membrane e | 2e-11 | |
| d2cjta1 | 128 | b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus no | 7e-15 | |
| d2cjta1 | 128 | b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus no | 9e-08 | |
| d1w15a_ | 138 | b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegi | 6e-13 | |
| d1w15a_ | 138 | b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegi | 6e-05 | |
| d1a25a_ | 132 | b.7.1.2 (A:) C2 domain from protein kinase c (beta | 2e-12 | |
| d1a25a_ | 132 | b.7.1.2 (A:) C2 domain from protein kinase c (beta | 4e-12 | |
| d1wfja_ | 136 | b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cr | 4e-12 | |
| d1wfja_ | 136 | b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cr | 1e-08 | |
| d2nq3a1 | 133 | b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itc | 1e-11 | |
| d2nq3a1 | 133 | b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itc | 1e-06 | |
| d2cm5a1 | 137 | b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat ( | 3e-11 | |
| d2cm5a1 | 137 | b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat ( | 0.001 | |
| d1bdya_ | 123 | b.7.1.1 (A:) Domain from protein kinase C delta {R | 4e-11 | |
| d1bdya_ | 123 | b.7.1.1 (A:) Domain from protein kinase C delta {R | 0.004 | |
| d1rsya_ | 143 | b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu | 1e-10 | |
| d1rsya_ | 143 | b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu | 3e-09 | |
| d2ep6a1 | 126 | b.7.1.1 (A:92-217) Multiple C2 and transmembrane d | 2e-10 | |
| d2ep6a1 | 126 | b.7.1.1 (A:92-217) Multiple C2 and transmembrane d | 3e-10 | |
| d1rlwa_ | 126 | b.7.1.1 (A:) Domain from cytosolic phospholipase A | 4e-10 | |
| d1rlwa_ | 126 | b.7.1.1 (A:) Domain from cytosolic phospholipase A | 8e-10 | |
| d1uowa_ | 157 | b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu | 4e-10 | |
| d1uowa_ | 157 | b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu | 6e-05 | |
| d1qasa2 | 131 | b.7.1.1 (A:626-756) PI-specific phospholipase C is | 6e-10 | |
| d1qasa2 | 131 | b.7.1.1 (A:626-756) PI-specific phospholipase C is | 2e-07 | |
| d1rh8a_ | 142 | b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [Tax | 9e-10 | |
| d1rh8a_ | 142 | b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [Tax | 8e-07 | |
| d1gmia_ | 136 | b.7.1.1 (A:) Domain from protein kinase C epsilon | 2e-09 | |
| d1gmia_ | 136 | b.7.1.1 (A:) Domain from protein kinase C epsilon | 6e-09 | |
| d1ugka_ | 138 | b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens | 4e-09 | |
| d1ugka_ | 138 | b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens | 0.001 | |
| d2zkmx2 | 122 | b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human | 2e-08 | |
| d1wfma_ | 138 | b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapie | 8e-07 | |
| d1wfma_ | 138 | b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapie | 9e-05 | |
| d1dqva2 | 145 | b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus | 2e-06 | |
| d1dqva2 | 145 | b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus | 1e-04 |
| >d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]} Length = 125 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Regulating synaptic membrane exocytosis protein, rim2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 70.9 bits (173), Expect = 4e-15
Identities = 23/118 (19%), Positives = 53/118 (44%), Gaps = 21/118 (17%)
Query: 5 RLYVYVLQGQDLLAKDS------YVKVQI-----GKHKSKSRILKNNSNPVWNEEFVFRV 53
+L V +L +DL +++ YVK+ K+K +++ +K P WN+ F++
Sbjct: 15 QLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSP 74
Query: 54 ---HNIDDEELVVSVFQHNDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLE 108
+ L ++++ D + + E +G + + + + +D P W+ L+
Sbjct: 75 VHRREFRERMLEITLW---DQARVREEESEFLGEILIELETALLDD----EPHWYKLQ 125
|
| >d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]} Length = 125 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Regulating synaptic membrane exocytosis protein, rim2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 60.1 bits (145), Expect = 2e-11
Identities = 21/111 (18%), Positives = 43/111 (38%), Gaps = 10/111 (9%)
Query: 538 LTVALVEGVNLASSEMTGLSDPYVVFT-----CNGKTRTSSVQLQTCDPQWHDILEFDA- 591
L V ++ +L S E +PYV + R + +T +P+W+ +
Sbjct: 16 LIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPV 75
Query: 592 --MEEPPSVLDVEVFDFDG-PFDQATSLGHAEINFLKHTSTELADMWVSLE 639
E +L++ ++D +++ LG I L+ + W L+
Sbjct: 76 HRREFRERMLEITLWDQARVREEESEFLGEILIE-LETALLDDEPHWYKLQ 125
|
| >d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 128 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Unc-13 homolog A species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 69.8 bits (170), Expect = 7e-15
Identities = 25/134 (18%), Positives = 54/134 (40%), Gaps = 19/134 (14%)
Query: 6 LYVYVLQGQDLLAKDS---YVKVQIGKHKSKSRILKNNSNPVWNEEFVFRVHNIDDEELV 62
L V V + + A++ YV +++ KS + ++ + P W ++F+F ++ +D V
Sbjct: 4 LCVGVKKAKFDGAQEKFNTYVTLKVQNVKSTTIAVRGS-QPSWEQDFMFEINRLDLGLTV 62
Query: 63 VSVFQHNDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTNKDCGK 122
V+ +G V +P+ +I + P W +L++ +
Sbjct: 63 E-VWNKGLIWDTM------VGTVWIPLRTIRQSN-EEGPGEWLTLDSQ-----AIMADSE 109
Query: 123 ILLTISLNGKGHNL 136
I T + H +
Sbjct: 110 ICGT--KDPTFHRI 121
|
| >d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 128 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Unc-13 homolog A species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 49.7 bits (118), Expect = 9e-08
Identities = 15/105 (14%), Positives = 41/105 (39%), Gaps = 5/105 (4%)
Query: 537 VLTVALVEGVNLASSEMTGLSDPYVVFTCNGKTRTSSVQLQTCDPQWHDILEFDAMEEPP 596
+L V + + + + YV +++++ ++ P W F+ +
Sbjct: 3 LLCVGVKKAKFDGA---QEKFNTYVTLKV-QNVKSTTIAVRGSQPSWEQDFMFE-INRLD 57
Query: 597 SVLDVEVFDFDGPFDQATSLGHAEINFLKHTSTELADMWVSLEGK 641
L VEV++ +D + ++ ++ E W++L+ +
Sbjct: 58 LGLTVEVWNKGLIWDTMVGTVWIPLRTIRQSNEEGPGEWLTLDSQ 102
|
| >d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 138 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 64.7 bits (157), Expect = 6e-13
Identities = 30/114 (26%), Positives = 48/114 (42%), Gaps = 19/114 (16%)
Query: 5 RLYVYVLQGQDLLAKDS------YVKVQIGKH-----KSKSRILKNNSNPVWNEEFVFRV 53
L V VL+ + L D YVKV + K K+ + K N V+NE FVF +
Sbjct: 16 TLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDI 75
Query: 54 HNIDDEELVVSVFQHNDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSL 107
EE+ V + + GS E++GR+ + ++ + H W +
Sbjct: 76 PCESLEEISVEFLVLDSER---GSRNEVIGRLVLGATAEGSGGGH-----WKEI 121
|
| >d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 138 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 41.6 bits (97), Expect = 6e-05
Identities = 20/92 (21%), Positives = 41/92 (44%), Gaps = 8/92 (8%)
Query: 538 LTVALVEGVNLASSEMTGLSDPYVVFTCNG-----KTRTSSVQLQTCDPQWHDILEFDAM 592
LTV +++ +L S+++GLSDPYV + + V+ T + ++++ FD
Sbjct: 17 LTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDIP 76
Query: 593 EE--PPSVLDVEVFDFDGPFDQATSLGHAEIN 622
E ++ V D + + +G +
Sbjct: 77 CESLEEISVEFLVLDSER-GSRNEVIGRLVLG 107
|
| >d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 132 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain from protein kinase c (beta) species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 62.8 bits (152), Expect = 2e-12
Identities = 29/126 (23%), Positives = 51/126 (40%), Gaps = 9/126 (7%)
Query: 522 RKGSDHGVKAQGDGWVLTVALVEGVNLASSEMTGLSDPYVVFTCNG-----KTRTSSVQL 576
R+G + ++A D VL V + + NL + GLSDPYV + +
Sbjct: 2 RRGRIY-IQAHIDREVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIK 60
Query: 577 QTCDPQWHDILEFDAME-EPPSVLDVEVFDFDGPFDQATSLGHAEINFLKHTSTELADMW 635
+ +P+W++ F E + L VE++D+D + +G + D W
Sbjct: 61 CSLNPEWNETFRFQLKESDKDRRLSVEIWDWD-LTSRNDFMGSLSFG-ISELQKAGVDGW 118
Query: 636 VSLEGK 641
L +
Sbjct: 119 FKLLSQ 124
|
| >d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 132 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain from protein kinase c (beta) species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 62.0 bits (150), Expect = 4e-12
Identities = 30/125 (24%), Positives = 54/125 (43%), Gaps = 21/125 (16%)
Query: 5 RLYVYVLQGQDLLAKDS------YVKVQI-----GKHKSKSRILKNNSNPVWNEEFVFRV 53
L V V ++L+ D YVK+++ + K K++ +K + NP WNE F F++
Sbjct: 16 VLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQL 75
Query: 54 HNID-DEELVVSVFQHNDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKT 112
D D L V ++ + S + MG + +S + WF L + +
Sbjct: 76 KESDKDRRLSVEIWDWD-----LTSRNDFMGSLSFGISELQKAG----VDGWFKLLSQEE 126
Query: 113 RKFTN 117
++ N
Sbjct: 127 GEYFN 131
|
| >d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 136 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain protein At1g63220 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 62.5 bits (151), Expect = 4e-12
Identities = 28/131 (21%), Positives = 53/131 (40%), Gaps = 21/131 (16%)
Query: 5 RLYVYVLQGQDLLAKDS------YVKVQIGKHKSKSR-ILKNNSNPVWNEEFVFRVHNID 57
L V ++ + L D YV++ KS + P WNE F+F V
Sbjct: 11 TLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSE-G 69
Query: 58 DEELVVSVFQHNDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTN 117
EL +F + G+ + +G +P+ + E + +PPT +++ +
Sbjct: 70 TTELKAKIFDKDV-----GTEDDAVGEATIPLEPVFVEGS--IPPTAYNVVKDE------ 116
Query: 118 KDCGKILLTIS 128
+ G+I + +S
Sbjct: 117 EYKGEIWVALS 127
|
| >d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 136 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain protein At1g63220 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 52.4 bits (125), Expect = 1e-08
Identities = 21/120 (17%), Positives = 46/120 (38%), Gaps = 6/120 (5%)
Query: 537 VLTVALVEGVNLASSEMTGLSDPYVVFT-CNGKTRTSSVQLQTCDPQWHDILEFDAMEEP 595
L V LV L ++ DPYV T +++ + P+W++ F + E
Sbjct: 11 TLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFT-VSEG 69
Query: 596 PSVLDVEVFDFDGPFDQATSLGHAEINFLK-HTSTELADMWVSLEGKLAQSAQSKVHLRI 654
+ L ++FD D + ++G A I + ++ + + ++ + +
Sbjct: 70 TTELKAKIFDKDV-GTEDDAVGEATIPLEPVFVEGSIPPTAYNVVKD--EEYKGEIWVAL 126
|
| >d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]} Length = 133 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: E3 ubiquitin-protein ligase Itchy species: Human (Homo sapiens) [TaxId: 9606]
Score = 60.9 bits (147), Expect = 1e-11
Identities = 25/134 (18%), Positives = 48/134 (35%), Gaps = 16/134 (11%)
Query: 4 TRLYVYVLQGQDLLAKDS------YVKVQIGKHKSKSRILKNNSNPVWNEEFVFRVHNID 57
++L + V+ + K + YV+V + K+ N ++P W + V +
Sbjct: 6 SQLQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTEKCNNTNSPKWKQPLTVIVTPVS 65
Query: 58 DEELVVSVFQHNDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTN 117
V+ H S L+G + + +N L +L+ K
Sbjct: 66 KL--HFRVWSHQT-----LKSDVLLGTAALDIYETLKSNNMKLEEVVVTLQ-LGGDKEPT 117
Query: 118 KDCGKILLTISLNG 131
+ G L+I L+G
Sbjct: 118 ETIGD--LSICLDG 129
|
| >d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]} Length = 133 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: E3 ubiquitin-protein ligase Itchy species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.3 bits (109), Expect = 1e-06
Identities = 22/124 (17%), Positives = 45/124 (36%), Gaps = 7/124 (5%)
Query: 538 LTVALVEGVNLASSEMTGLSDPYVVFTCNGKTRTSSVQLQTCDPQWHDILEFDAMEEPPS 597
L + ++ + + PYV T +G+++ + T P+W L
Sbjct: 8 LQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTEKCNNTNSPKWKQPLTVIVTPVSKL 67
Query: 598 VLDVEVFDFDGPFDQATSLGHAEIN---FLKHTSTELADMWVSLEGKLAQSAQSKV-HLR 653
V+ LG A ++ LK + +L ++ V+L+ + + L
Sbjct: 68 HF--RVWSHQT-LKSDVLLGTAALDIYETLKSNNMKLEEVVVTLQLGGDKEPTETIGDLS 124
Query: 654 IFLE 657
I L+
Sbjct: 125 ICLD 128
|
| >d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 137 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2b-domain of rabphilin species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 60.2 bits (145), Expect = 3e-11
Identities = 28/121 (23%), Positives = 53/121 (43%), Gaps = 19/121 (15%)
Query: 5 RLYVYVLQGQDLLAKDS------YVKVQIG-----KHKSKSRILKNNSNPVWNEEFVFRV 53
L V +++ L A D+ +VK+ + K K K++I K NP +NEEF + +
Sbjct: 16 GLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDI 75
Query: 54 HNIDDEELVVSVFQHNDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTR 113
+ D + + + + D G S + +G ++ +S+ H W+ K +
Sbjct: 76 KHSDLAKKSLDISVWDYDI---GKSNDYIGGCQLGISAKGERLKH-----WYECLKNKDK 127
Query: 114 K 114
K
Sbjct: 128 K 128
|
| >d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 137 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2b-domain of rabphilin species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 37.9 bits (87), Expect = 0.001
Identities = 14/76 (18%), Positives = 35/76 (46%), Gaps = 5/76 (6%)
Query: 537 VLTVALVEGVNLASSEMTGLSDPYVVFTCNG-----KTRTSSVQLQTCDPQWHDILEFDA 591
L V ++ V+LA+ + G SDP+V + ++ +T +P++++ +D
Sbjct: 16 GLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDI 75
Query: 592 MEEPPSVLDVEVFDFD 607
+ +++ +D
Sbjct: 76 KHSDLAKKSLDISVWD 91
|
| >d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 123 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from protein kinase C delta species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 59.4 bits (143), Expect = 4e-11
Identities = 15/112 (13%), Positives = 36/112 (32%), Gaps = 15/112 (13%)
Query: 553 MTGLSDPYVVFTCNG-----KTRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFD 607
S P+ + +T + T P+W + V+ + +
Sbjct: 20 EDDASQPFCAVKMKEALTTDRGKTLVQKKPTMYPEWKSTFDAHI--YEGRVIQIVLMRAA 77
Query: 608 GPFDQATSLGHAEINFLKHTSTELADMWVSLE--GKLAQSAQSKVHLRIFLE 657
++G + + + A+ W+ L+ K+ + ++ FLE
Sbjct: 78 EDPMSEVTVGVSVLAERCKKNNGKAEFWLDLQPQAKV------LMCVQYFLE 123
|
| >d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 123 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from protein kinase C delta species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 36.3 bits (83), Expect = 0.004
Identities = 16/117 (13%), Positives = 30/117 (25%), Gaps = 28/117 (23%)
Query: 20 DSYVKVQI-----GKHKSKSRILKNNSNPVWNEEFVFRVHNIDDEELVVSVFQHNDDSGL 74
+ V++ K P W F ++ ++V+ +
Sbjct: 25 QPFCAVKMKEALTTDRGKTLVQKKPTMYPEWKSTFDAHIYEGRVIQIVLMRAAEDP---- 80
Query: 75 FGSSGELMGRVRVPVSSIAAEDNH--MLPPTWFSLETPKTRKFTNKDCGKILLTISL 129
M V V VS +A W L+ K+L+ +
Sbjct: 81 -------MSEVTVGVSVLAERCKKNNGKAEFWLDLQPQ----------AKVLMCVQY 120
|
| >d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 143 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptogamin I species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 58.2 bits (140), Expect = 1e-10
Identities = 27/114 (23%), Positives = 55/114 (48%), Gaps = 15/114 (13%)
Query: 5 RLYVYVLQGQDLLAKDS------YVKVQI---GKHKSKSRILKNNSNPVWNEEFVFRVHN 55
+L V ++Q +L A D YVKV + K K ++++ + NPV+NE+F F+V
Sbjct: 35 QLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPY 94
Query: 56 IDDEELVVSVFQHNDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLET 109
+ + + ++ D S +++G +VP++++ W L++
Sbjct: 95 SELGGKTLVMAVYDFDR---FSKHDIIGEFKVPMNTVDFGHVT---EEWRDLQS 142
|
| >d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 143 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptogamin I species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 54.4 bits (130), Expect = 3e-09
Identities = 25/107 (23%), Positives = 45/107 (42%), Gaps = 6/107 (5%)
Query: 538 LTVALVEGVNLASSEMTGLSDPYVVF---TCNGKTRTSSVQLQTCDPQWHDILEFD--AM 592
L V +++ L + +M G SDPYV K + V +T +P +++ F
Sbjct: 36 LLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYS 95
Query: 593 EEPPSVLDVEVFDFDGPFDQATSLGHAEINFLKHTSTELADMWVSLE 639
E L + V+DFD F + +G ++ + + W L+
Sbjct: 96 ELGGKTLVMAVYDFD-RFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQ 141
|
| >d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 57.5 bits (138), Expect = 2e-10
Identities = 34/130 (26%), Positives = 55/130 (42%), Gaps = 20/130 (15%)
Query: 6 LYVYVLQGQDLLAKDS------YVKVQIGKHKSKSRILKNNSNPVWNEEFVFRVHNIDDE 59
L V VL+ DLLA D + +++G + ++ + N NP WN+ F F + +I D
Sbjct: 8 LQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPIKDIHDV 67
Query: 60 ELVVSVFQHNDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTNKD 119
V VF + + +G+V +P+ SI P + L K +
Sbjct: 68 LEVT-VFDED-----GDKPPDFLGKVAIPLLSIRDG-----QPNCYVL---KNKDLEQAF 113
Query: 120 CGKILLTISL 129
G I L + L
Sbjct: 114 KGVIYLEMDL 123
|
| >d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 56.7 bits (136), Expect = 3e-10
Identities = 28/124 (22%), Positives = 53/124 (42%), Gaps = 5/124 (4%)
Query: 537 VLTVALVEGVNLASSEMTGLSDPYVVFTCNGKTRTSSVQLQTCDPQWHDILEFDAMEEPP 596
+L V +++ +L +++ +G SDP+ + + + +P+W+ + F +
Sbjct: 7 ILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPIK-DIH 65
Query: 597 SVLDVEVFDFDGPFDQATSLGHAEINFLKHTSTELADMWVSLEGKLAQSAQS-KVHLRIF 655
VL+V VFD DG LG I L + L+ K + A ++L +
Sbjct: 66 DVLEVTVFDEDG-DKPPDFLGKVAIPLLSIRDGQ--PNCYVLKNKDLEQAFKGVIYLEMD 122
Query: 656 LENN 659
L N
Sbjct: 123 LIYN 126
|
| >d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from cytosolic phospholipase A2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 56.3 bits (135), Expect = 4e-10
Identities = 23/126 (18%), Positives = 46/126 (36%), Gaps = 14/126 (11%)
Query: 538 LTVALVEGVNL---ASSEMTGLSDPYVVFTCNG---KTRTSSVQLQTCDPQWHDILEFDA 591
TV ++ + A +M DPYV + + + +P W++ EF
Sbjct: 5 FTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFIL 64
Query: 592 MEEPPSVLDVEVFDFDGPFDQATSLGHAEINFLKHTSTELADMWVSLEGKLAQSAQSKVH 651
+VL++ + D + D+ +LG A E ++ +++
Sbjct: 65 DPNQENVLEITLMDANYVMDE--TLGTATFTVSSMKVGEKKEVPFIFNQV------TEMV 116
Query: 652 LRIFLE 657
L + LE
Sbjct: 117 LEMSLE 122
|
| >d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from cytosolic phospholipase A2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 55.5 bits (133), Expect = 8e-10
Identities = 26/121 (21%), Positives = 44/121 (36%), Gaps = 21/121 (17%)
Query: 3 STRLYVYVLQGQDLLAK---------DSYVKVQIGK---HKSKSRILKNNSNPVWNEEFV 50
S + V VL+ + D YV++ I + ++R N+ NPVWNE F
Sbjct: 2 SHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFE 61
Query: 51 FRVHNIDDEELVVSVFQHNDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETP 110
F + + L +++ N E +G VSS+ + + F
Sbjct: 62 FILDPNQENVLEITLMDAN------YVMDETLGTATFTVSSMKVGEKKEV---PFIFNQV 112
Query: 111 K 111
Sbjct: 113 T 113
|
| >d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 157 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptogamin I species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 57.1 bits (137), Expect = 4e-10
Identities = 33/127 (25%), Positives = 55/127 (43%), Gaps = 23/127 (18%)
Query: 5 RLYVYVLQGQDLLAKDS------YVKVQIGKHKS-----KSRILKNNSNPVWNEEFVFRV 53
+L V +L+ ++L D YVK+ + ++ K+ I KN NP +NE F F V
Sbjct: 26 KLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEV 85
Query: 54 HNIDDEELVVSVFQHNDDSGLFGSSGELMGRVRVPVSSIAAEDNH---MLP------PTW 104
+++ V V + D + +G+V V +S AE H ML W
Sbjct: 86 PFEQIQKVQVVVTVLDYDK---IGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQW 142
Query: 105 FSLETPK 111
+L+ +
Sbjct: 143 HTLQVEE 149
|
| >d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 157 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptogamin I species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 42.1 bits (98), Expect = 6e-05
Identities = 30/124 (24%), Positives = 55/124 (44%), Gaps = 20/124 (16%)
Query: 537 VLTVALVEGVNLASSEMTGLSDPYVVFTC-----NGKTRTSSVQLQTCDPQWHDILEFDA 591
LTV ++E NL ++ GLSDPYV K + ++++ T +P +++ F+
Sbjct: 26 KLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEV 85
Query: 592 MEE--PPSVLDVEVFDFDGPFDQATSLGHAEINF------LKHTSTELA------DMWVS 637
E + V V D+D + ++G + + L+H S LA W +
Sbjct: 86 PFEQIQKVQVVVTVLDYD-KIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHT 144
Query: 638 LEGK 641
L+ +
Sbjct: 145 LQVE 148
|
| >d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 131 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 55.9 bits (134), Expect = 6e-10
Identities = 24/125 (19%), Positives = 45/125 (36%), Gaps = 9/125 (7%)
Query: 538 LTVALVEGVNLASSEM--TGLSDPYVVFTCNG------KTRTSSVQLQTCDPQWHDILEF 589
L V ++ G L + DP V+ +G +T+ + +P+W EF
Sbjct: 6 LRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEF 65
Query: 590 DAMEEPPSVLDVEVFDFDGPFDQATSLGHAEINFLKHTSTELADMWVSLEGKLAQSAQSK 649
+ +++ V D+D + +G + I + +S G SA
Sbjct: 66 EVTVPDLALVRFMVEDYD-SSSKNDFIGQSTIPWNSLKQGYRHVHLLSKNGDQHPSATLF 124
Query: 650 VHLRI 654
V + I
Sbjct: 125 VKISI 129
|
| >d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 131 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 49.0 bits (116), Expect = 2e-07
Identities = 27/140 (19%), Positives = 47/140 (33%), Gaps = 28/140 (20%)
Query: 4 TRLYVYVLQGQDLLAK--------DSYVKVQIG------KHKSKSRILKNNSNPVWNEEF 49
RL V ++ GQ L D V V+I + + I N NP W+ EF
Sbjct: 4 ERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEF 63
Query: 50 VFRVHNIDDEELVVSVFQHNDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLET 109
F V D + V ++ S + +G+ +P ++ L +
Sbjct: 64 EFEVTVPDLALVRFMVEDYD-----SSSKNDFIGQSTIPW------NSLKQGYRHVHLLS 112
Query: 110 PKTRKFTNKDCGKILLTISL 129
+ + + IS+
Sbjct: 113 KNGDQHP---SATLFVKISI 129
|
| >d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 142 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Piccolo species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 55.7 bits (133), Expect = 9e-10
Identities = 27/127 (21%), Positives = 62/127 (48%), Gaps = 31/127 (24%)
Query: 5 RLYVYVLQGQDLLAKDS------YVKVQI--------------GKHKSKSRILKNNSNPV 44
L +++LQ ++L+ +D+ +VKV + ++K +++ ++ + NP
Sbjct: 19 NLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPE 78
Query: 45 WNEEFVFRV---HNIDDEELVVSVFQHNDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLP 101
WN+ +++ + + L V+V+ ++ SS + +G V + +SS + DN
Sbjct: 79 WNQTVIYKSISMEQLMKKTLEVTVWDYD-----RFSSNDFLGEVLIDLSSTSHLDNT--- 130
Query: 102 PTWFSLE 108
P W+ L+
Sbjct: 131 PRWYPLK 137
|
| >d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 142 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Piccolo species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 47.2 bits (111), Expect = 8e-07
Identities = 26/123 (21%), Positives = 48/123 (39%), Gaps = 20/123 (16%)
Query: 537 VLTVALVEGVNLASSEMTGLSDPYVVFTCNG---------------KTRTSSVQLQTCDP 581
L + +++ NL + G SDP+V K RT VQ ++ +P
Sbjct: 19 NLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQ-KSLNP 77
Query: 582 QWHDILEF---DAMEEPPSVLDVEVFDFDGPFDQATSLGHAEINFLKHTSTELADMWVSL 638
+W+ + + + L+V V+D+D F LG I+ + + W L
Sbjct: 78 EWNQTVIYKSISMEQLMKKTLEVTVWDYD-RFSSNDFLGEVLIDLSSTSHLDNTPRWYPL 136
Query: 639 EGK 641
+ +
Sbjct: 137 KEQ 139
|
| >d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]} Length = 136 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from protein kinase C epsilon species: Rat (Rattus rattus) [TaxId: 10117]
Score = 54.5 bits (130), Expect = 2e-09
Identities = 30/139 (21%), Positives = 50/139 (35%), Gaps = 23/139 (16%)
Query: 537 VLTVALVEGVNL-----------ASSEMTGLSDPYVVFTCNG-KTRTSSVQLQTCDPQWH 584
+L + + E V+L T L DPY+ + + ++ + +T P WH
Sbjct: 7 LLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAWH 66
Query: 585 DILEFDAMEEPPSVLDVEVFDFDGPFDQATSLGHAEINF--LKHTSTELADMWVSLEGKL 642
D D L V G D + I F L + + W+ LE
Sbjct: 67 DEFVTDVCNGRKIELAVFHDAPIGYDDFV---ANCTIQFEELLQNGSRHFEDWIDLEP-- 121
Query: 643 AQSAQSKVHLRIFLENNNG 661
+ KV++ I L ++G
Sbjct: 122 ----EGKVYVIIDLSGSSG 136
|
| >d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]} Length = 136 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from protein kinase C epsilon species: Rat (Rattus rattus) [TaxId: 10117]
Score = 53.4 bits (127), Expect = 6e-09
Identities = 23/150 (15%), Positives = 47/150 (31%), Gaps = 36/150 (24%)
Query: 1 MVSTRLYVYVLQGQDLLAK-----------------DSYVKVQIGKHK-SKSRILKNNSN 42
+ + L + + + L D Y+ + + + ++ + ++
Sbjct: 3 VFNGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNS 62
Query: 43 PVWNEEFVFRVHNIDDEELVVSVFQHNDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPP 102
P W++EFV V N EL VF + + + + +
Sbjct: 63 PAWHDEFVTDVCNGRKIELA--VFHDAP-----IGYDDFVANCTIQFEELLQNGSRHF-E 114
Query: 103 TWFSLETPKTRKFTNKDCGKILLTISLNGK 132
W LE GK+ + I L+G
Sbjct: 115 DWIDLE----------PEGKVYVIIDLSGS 134
|
| >d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]} Length = 138 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Human (Homo sapiens) [TaxId: 9606]
Score = 54.0 bits (129), Expect = 4e-09
Identities = 26/120 (21%), Positives = 46/120 (38%), Gaps = 22/120 (18%)
Query: 5 RLYVYVLQGQDLLAKDS-------YVKVQI---GKHKSKSRILKNNSNPVWNEEFVFRVH 54
V + + + L A D Y+K+ I KHK K+R+L+ +P ++E F F
Sbjct: 23 AFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYGI 82
Query: 55 NIDD---EELVVSVFQHNDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPK 111
L ++ F +++G V +P+S I + M + E
Sbjct: 83 PYTQIQELALHFTIL----SFDRFSRD-DIIGEVLIPLSGIELSEGKM----LMNREIIS 133
|
| >d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]} Length = 138 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.2 bits (88), Expect = 0.001
Identities = 24/110 (21%), Positives = 38/110 (34%), Gaps = 9/110 (8%)
Query: 537 VLTVALVEGVNL-ASSEMTGLSDPYVVFTCNG---KTRTSSVQLQTCDPQWHDILEFDAM 592
V + E L A E + SDPY+ T + V +T DP + + F +
Sbjct: 23 AFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYGI 82
Query: 593 ---EEPPSVLDVEVFDFDGPFDQATSLGHAEINFLKHTSTELADMWVSLE 639
+ L + FD F + +G I L M ++ E
Sbjct: 83 PYTQIQELALHFTILSFD-RFSRDDIIGEVLIP-LSGIELSEGKMLMNRE 130
|
| >d2zkmx2 b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 122 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Phospholipase C-beta-2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 51.1 bits (122), Expect = 2e-08
Identities = 23/108 (21%), Positives = 50/108 (46%), Gaps = 21/108 (19%)
Query: 4 TRLYVYVLQGQDLLAK--DSYVKVQIG--------KHKSKSRILKNNSNPVWNEE--FVF 51
T L + V+ GQ L + +YV+V++ ++++K N+ NPVW EE
Sbjct: 1 TTLSITVISGQFLSERSVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFE 60
Query: 52 RVHNIDDEELVVSVFQHNDDSGLFGSSGELMGRVRVPVSSIAAEDNHM 99
++ + L V+V + + +G +P++++ + +H+
Sbjct: 61 KILMPELASLRVAVMEEGNK---------FLGHRIIPINALNSGYHHL 99
|
| >d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]} Length = 138 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin XIII species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.2 bits (111), Expect = 8e-07
Identities = 18/114 (15%), Positives = 39/114 (34%), Gaps = 13/114 (11%)
Query: 5 RLYVYVLQGQDLLAK---DSYVKVQI----GKHKSKSRILKNNSNPVWNEEFVFRVHNID 57
L+V L+ D YV+ + G ++++ + K + W E V + +
Sbjct: 27 ELFVTRLEAVTSNHDGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPLAEEE 86
Query: 58 DEELVVSVFQHNDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPK 111
+++ D S + G +R+ + + W L+T
Sbjct: 87 LPTATLTLTLRTCDR---FSRHSVAGELRLGLDGTSVPLGA---AQWGELKTSG 134
|
| >d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]} Length = 138 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin XIII species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.1 bits (95), Expect = 9e-05
Identities = 17/109 (15%), Positives = 33/109 (30%), Gaps = 8/109 (7%)
Query: 538 LTVALVEGVNLASSEMTGLSDPYVVFTCNGK----TRTSSVQLQTCDPQWHDILEFDAME 593
L V +E V G D YV + + ++++ + W + L E
Sbjct: 28 LFVTRLEAVTS---NHDGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPLAE 84
Query: 594 EPPSVLDVEVFDFD-GPFDQATSLGHAEINFLKHTSTELADMWVSLEGK 641
E + + F + + G + + A W L+
Sbjct: 85 EELPTATLTLTLRTCDRFSRHSVAGELRLGLDGTSVPLGAAQWGELKTS 133
|
| >d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 145 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin III species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 46.3 bits (109), Expect = 2e-06
Identities = 32/128 (25%), Positives = 46/128 (35%), Gaps = 24/128 (18%)
Query: 5 RLYVYVLQGQDLLAKDS------YVKVQIGKH-----KSKSRILKNNSNPVWNEEFVFRV 53
L V +++ +L A D YVK + K K+ I KN NP +NE VF V
Sbjct: 21 LLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDV 80
Query: 54 HNIDDEELVVSVFQHNDDSGLFGSSGELMGRVRVPVSSIAAED----NHMLPPT------ 103
E + +S+ + D E++G RV + ML
Sbjct: 81 APESVENVGLSIAVVDYDC---IGHNEVIGVCRVGPEAADPHGREHWAEMLANPRKPVEH 137
Query: 104 WFSLETPK 111
W L K
Sbjct: 138 WHQLVEEK 145
|
| >d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 145 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin III species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 41.3 bits (96), Expect = 1e-04
Identities = 26/109 (23%), Positives = 48/109 (44%), Gaps = 9/109 (8%)
Query: 537 VLTVALVEGVNLASSEMTGLSDPYVVFTCNG-----KTRTSSVQLQTCDPQWHDILEFD- 590
+LTV +++ NL + ++TG SDPYV + K R +S++ T +P +++ L FD
Sbjct: 21 LLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDV 80
Query: 591 -AMEEPPSVLDVEVFDFDGPFDQATSLGHAEINFLKHTSTELADMWVSL 638
L + V D+D +G + + + W +
Sbjct: 81 APESVENVGLSIAVVDYDC-IGHNEVIGVCRVG-PEAADPHGREHWAEM 127
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 985 | |||
| d2ep6a1 | 126 | Multiple C2 and transmembrane domain-containing pr | 99.84 | |
| d1rlwa_ | 126 | Domain from cytosolic phospholipase A2 {Human (Hom | 99.78 | |
| d1gmia_ | 136 | Domain from protein kinase C epsilon {Rat (Rattus | 99.78 | |
| d1wfja_ | 136 | C2 domain protein At1g63220 {Thale cress (Arabidop | 99.78 | |
| d2ep6a1 | 126 | Multiple C2 and transmembrane domain-containing pr | 99.77 | |
| d1rlwa_ | 126 | Domain from cytosolic phospholipase A2 {Human (Hom | 99.75 | |
| d1a25a_ | 132 | C2 domain from protein kinase c (beta) {Rat (Rattu | 99.75 | |
| d2nq3a1 | 133 | E3 ubiquitin-protein ligase Itchy {Human (Homo sap | 99.74 | |
| d1qasa2 | 131 | PI-specific phospholipase C isozyme D1 (PLC-D1), C | 99.73 | |
| d1gmia_ | 136 | Domain from protein kinase C epsilon {Rat (Rattus | 99.72 | |
| d1wfja_ | 136 | C2 domain protein At1g63220 {Thale cress (Arabidop | 99.72 | |
| d1rsya_ | 143 | Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10 | 99.72 | |
| d1rh8a_ | 142 | Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} | 99.71 | |
| d2nq3a1 | 133 | E3 ubiquitin-protein ligase Itchy {Human (Homo sap | 99.71 | |
| d2cjta1 | 128 | Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: | 99.7 | |
| d1dqva1 | 130 | Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: | 99.68 | |
| d2cjta1 | 128 | Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: | 99.67 | |
| d1qasa2 | 131 | PI-specific phospholipase C isozyme D1 (PLC-D1), C | 99.65 | |
| d1wfma_ | 138 | Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9 | 99.64 | |
| d1a25a_ | 132 | C2 domain from protein kinase c (beta) {Rat (Rattu | 99.64 | |
| d2bwqa1 | 125 | Regulating synaptic membrane exocytosis protein, r | 99.63 | |
| d1rsya_ | 143 | Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10 | 99.6 | |
| d1ugka_ | 138 | Synaptotagmin IV {Human (Homo sapiens) [TaxId: 960 | 99.58 | |
| d1rh8a_ | 142 | Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} | 99.58 | |
| d2cm5a1 | 137 | C2b-domain of rabphilin {Rat (Rattus norvegicus) [ | 99.58 | |
| d1w15a_ | 138 | Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: | 99.58 | |
| d1dqva1 | 130 | Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: | 99.58 | |
| d1uowa_ | 157 | Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10 | 99.57 | |
| d2bwqa1 | 125 | Regulating synaptic membrane exocytosis protein, r | 99.57 | |
| d1wfma_ | 138 | Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9 | 99.56 | |
| d1bdya_ | 123 | Domain from protein kinase C delta {Rat (Rattus no | 99.5 | |
| d2cm5a1 | 137 | C2b-domain of rabphilin {Rat (Rattus norvegicus) [ | 99.49 | |
| d1uowa_ | 157 | Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10 | 99.48 | |
| d1w15a_ | 138 | Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: | 99.48 | |
| d1ugka_ | 138 | Synaptotagmin IV {Human (Homo sapiens) [TaxId: 960 | 99.48 | |
| d1dqva2 | 145 | Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: | 99.47 | |
| d1bdya_ | 123 | Domain from protein kinase C delta {Rat (Rattus no | 99.44 | |
| d1dqva2 | 145 | Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: | 99.39 | |
| d2zkmx2 | 122 | Phospholipase C-beta-2 {Human (Homo sapiens) [TaxI | 99.34 | |
| d2zkmx2 | 122 | Phospholipase C-beta-2 {Human (Homo sapiens) [TaxI | 99.3 | |
| d1em2a_ | 214 | Lipid transport domain of Mln64 {Human (Homo sapie | 91.38 | |
| d1e7ua2 | 174 | Phoshoinositide 3-kinase (PI3K) {Pig (Sus scrofa) | 91.34 | |
| d1e7ua2 | 174 | Phoshoinositide 3-kinase (PI3K) {Pig (Sus scrofa) | 89.97 | |
| d1jssa_ | 199 | Cholesterol-regulated Start protein 4 (Stard4). {M | 84.69 |
| >d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.84 E-value=4.5e-21 Score=181.25 Aligned_cols=119 Identities=24% Similarity=0.411 Sum_probs=105.0
Q ss_pred CCeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCEEEEeeeccCCCCCeEeEEEEEEeecCCCCEEEEEEEecCCCCCCC
Q 001987 534 DGWVLTVALVEGVNLASSEMTGLSDPYVVFTCNGKTRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGPFDQA 613 (985)
Q Consensus 534 ~~g~L~V~v~~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~~~~~tlnP~Wne~f~f~v~~~~~~~L~v~V~D~d~~~~~d 613 (985)
+.|.|+|+|++|+||+++|..|.+||||++++++++++|+++++|+||+|||+|.|.+ ..+...|.|+|||+|. +++|
T Consensus 4 ~~G~L~V~v~~A~~L~~~d~~g~~Dpyv~v~~~~~~~~T~~~~~t~nP~wne~f~f~v-~~~~~~L~i~V~d~~~-~~~d 81 (126)
T d2ep6a1 4 DVGILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPI-KDIHDVLEVTVFDEDG-DKPP 81 (126)
T ss_dssp CSEEEEEEEEEEESCCCSSSSSCCCEEEEEEETTEEEECCCCSSCSSCCCCEEEEEEE-SCTTCEEEEEEEEEET-TEEE
T ss_pred ccEEEEEEEEEeECCCCCCCCCCcCeEEEEEcCCeEEEEEeeCCceeEEEEEEEEEEE-eccCceeEEEEEEccC-CcCc
Confidence 4589999999999999999999999999999999999999999999999999999995 5566899999999998 7899
Q ss_pred CccceEEEEeeccccCcccceEEEccccc-cCCcceeEEEEEee
Q 001987 614 TSLGHAEINFLKHTSTELADMWVSLEGKL-AQSAQSKVHLRIFL 656 (985)
Q Consensus 614 d~lG~~~i~l~~l~~~~~~~~w~~L~~~~-~~~~~g~l~l~~~l 656 (985)
++||++.|+|.++..+. ..|+.|.... ....+|.|+|++.+
T Consensus 82 ~~lG~~~i~l~~l~~~~--~~~~~l~~~~~~~~~~G~i~l~~~~ 123 (126)
T d2ep6a1 82 DFLGKVAIPLLSIRDGQ--PNCYVLKNKDLEQAFKGVIYLEMDL 123 (126)
T ss_dssp EECCBCEEEGGGCCSSC--CEECCCBCSCTTSCCSSEEEEEEEE
T ss_pred ceEEEEEEEHHHCCCCC--ceEEEccccCCCCceeEEEEEEEEE
Confidence 99999999999986654 5799887643 33456999999864
|
| >d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from cytosolic phospholipase A2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.78 E-value=2.6e-19 Score=169.02 Aligned_cols=116 Identities=16% Similarity=0.270 Sum_probs=100.4
Q ss_pred CeEEEEEEEEeecCCCC---CCCCCCCcEEEEEECC---EEEEeeeccCCCCCeEeEEEEEEeecCCCCEEEEEEEecCC
Q 001987 535 GWVLTVALVEGVNLASS---EMTGLSDPYVVFTCNG---KTRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDG 608 (985)
Q Consensus 535 ~g~L~V~v~~a~~L~~~---d~~g~~DPyv~v~~~~---~~~kT~~~~~tlnP~Wne~f~f~v~~~~~~~L~v~V~D~d~ 608 (985)
.+.|+|+|++|+||+.. |..|.+||||++++++ ++++|+++++++||.|||+|.|.+.......|.|+|||+|.
T Consensus 2 s~~l~V~v~~a~~L~~~~~~d~~~~~Dpyv~v~l~~~~~~~~~T~~~~~t~nP~wne~f~f~i~~~~~~~L~v~V~d~d~ 81 (126)
T d1rlwa_ 2 SHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANY 81 (126)
T ss_dssp CEEEEEEEEEEESCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTTSCCEEEEEEEECCS
T ss_pred CcEEEEEEEEccCCCCccccccCCCCCcEEEEEECCcccceeEeeecCCCccceeceeeeecccCcccCcEEEEEEECCC
Confidence 35899999999999974 4468999999999974 67899999999999999999999766666789999999996
Q ss_pred CCCCCCccceEEEEeeccccCcccceEEEccccccCCcceeEEEEEee
Q 001987 609 PFDQATSLGHAEINFLKHTSTELADMWVSLEGKLAQSAQSKVHLRIFL 656 (985)
Q Consensus 609 ~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~g~l~l~~~l 656 (985)
.+|++||++.|+|.++..+...+.|++|.+ ..+|.|++++.+
T Consensus 82 --~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~----~~~g~i~~~l~~ 123 (126)
T d1rlwa_ 82 --VMDETLGTATFTVSSMKVGEKKEVPFIFNQ----VTEMVLEMSLEV 123 (126)
T ss_dssp --SCCEEEEEEEEEGGGSCTTCEEEEEEEETT----TEEEEEEEEEEC
T ss_pred --CCCCeEEEEEEEHHHccCCCeEEEEEEccC----CCeEEEEEEEEE
Confidence 568999999999999988888999999975 356777777754
|
| >d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from protein kinase C epsilon species: Rat (Rattus rattus) [TaxId: 10117]
Probab=99.78 E-value=6.6e-19 Score=168.30 Aligned_cols=118 Identities=22% Similarity=0.363 Sum_probs=101.6
Q ss_pred CCeEEEEEEEEeecCCCCC-----------CCCCCCcEEEEEECCEE-EEeeeccCCCCCeEeEEEEEEeecCCCCEEEE
Q 001987 534 DGWVLTVALVEGVNLASSE-----------MTGLSDPYVVFTCNGKT-RTSSVQLQTCDPQWHDILEFDAMEEPPSVLDV 601 (985)
Q Consensus 534 ~~g~L~V~v~~a~~L~~~d-----------~~g~~DPyv~v~~~~~~-~kT~~~~~tlnP~Wne~f~f~v~~~~~~~L~v 601 (985)
..|.|+|+|++|++|++.+ ..+.+||||+++++++. .+|++++++.||.|||+|.|.+.. ...|.|
T Consensus 4 ~~G~L~v~I~~A~~L~~~~~~~~~~~~~~~~~~~~DPYv~v~l~~~~~~~T~~~~~t~~P~Wne~f~f~v~~--~~~l~i 81 (136)
T d1gmia_ 4 FNGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAWHDEFVTDVCN--GRKIEL 81 (136)
T ss_dssp EEEEEEEEEEEEESCCCCHHHHCC-CCSSCCCCCCCEEEEEEETTEEEEECCCCSSCSSCEEEEEEEEEEEE--ECEEEE
T ss_pred EEEEEEEEEEEeECCCcccccccccccccCCCCCcCcEEEEEeCCCcCcEeeEEcCCCCccCccEEEEEEec--CCceEE
Confidence 4689999999999999864 36789999999999866 589999999999999999999643 478999
Q ss_pred EEEecCCCCCCCCccceEEEEeeccccCc--ccceEEEccccccCCcceeEEEEEeeecCC
Q 001987 602 EVFDFDGPFDQATSLGHAEINFLKHTSTE--LADMWVSLEGKLAQSAQSKVHLRIFLENNN 660 (985)
Q Consensus 602 ~V~D~d~~~~~dd~lG~~~i~l~~l~~~~--~~~~w~~L~~~~~~~~~g~l~l~~~ls~~~ 660 (985)
+|||+|. +++|++||++.|+|.++.... ..+.|++|+ .+|+++|++.++++.
T Consensus 82 ~V~d~~~-~~~d~~iG~~~i~l~~l~~~~~~~~~~w~~L~------p~G~v~l~v~~~~~~ 135 (136)
T d1gmia_ 82 AVFHDAP-IGYDDFVANCTIQFEELLQNGSRHFEDWIDLE------PEGKVYVIIDLSGSS 135 (136)
T ss_dssp EEEECCS-SSSCEEEEEEEEEHHHHTSTTCSEEEEEEECB------SSCEEEEEEEEEEEE
T ss_pred EEEEecC-CCCceeEEEEEEEHHHhhhcCCcceeEEEeCC------CCcEEEEEEEEEeCC
Confidence 9999998 799999999999999986543 467899998 368999999887653
|
| >d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain protein At1g63220 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.78 E-value=4.9e-19 Score=169.39 Aligned_cols=122 Identities=20% Similarity=0.324 Sum_probs=104.1
Q ss_pred CCCeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCEEEEeeecc-CCCCCeEeEEEEEEeecCCCCEEEEEEEecCCCCC
Q 001987 533 GDGWVLTVALVEGVNLASSEMTGLSDPYVVFTCNGKTRTSSVQL-QTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGPFD 611 (985)
Q Consensus 533 ~~~g~L~V~v~~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~~~~-~tlnP~Wne~f~f~v~~~~~~~L~v~V~D~d~~~~ 611 (985)
+..|.|+|+|++|++|+.+|..|++||||+++++++.++|++++ +++||+|||+|.|.+. .....|+|+|||+|. ++
T Consensus 7 ~p~G~L~V~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~t~~~~~~~~nP~Wne~f~f~v~-~~~~~L~v~V~d~d~-~~ 84 (136)
T d1wfja_ 7 GPHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVS-EGTTELKAKIFDKDV-GT 84 (136)
T ss_dssp CCEEEEEEEEEEEEECSSCCSSCSSCCCEEEESSSCEEECCCCTTCCSSCEEEEEEEEEEE-SSCCEEEEEECCSSS-CT
T ss_pred CCcEEEEEEEEEeeCCCCCCCCCCCCccEEEEEeeeeEEEEEEecCCCcEEEeeEEEEEEc-CccceEEEEEEEecC-CC
Confidence 34689999999999999999999999999999999999999976 5999999999999954 456679999999998 79
Q ss_pred CCCccceEEEEeecccc-CcccceEEEccccccCCcceeEEEEEeeec
Q 001987 612 QATSLGHAEINFLKHTS-TELADMWVSLEGKLAQSAQSKVHLRIFLEN 658 (985)
Q Consensus 612 ~dd~lG~~~i~l~~l~~-~~~~~~w~~L~~~~~~~~~g~l~l~~~ls~ 658 (985)
+|++||++.|+|.++.. +.....|+.|.... ...|+|+|.+.+..
T Consensus 85 ~d~~iG~~~i~L~~l~~~~~~~~~~~~l~~~~--~~~G~i~l~l~~~p 130 (136)
T d1wfja_ 85 EDDAVGEATIPLEPVFVEGSIPPTAYNVVKDE--EYKGEIWVALSFKP 130 (136)
T ss_dssp TTCCSEEEEEESHHHHHHSEEEEEEEEEEETT--EEEEEEEEEEEEEE
T ss_pred CCCEEEEEEEEhHHhcccCCcCcEEEEecCCC--ccCEEEEEEEEEEe
Confidence 99999999999999754 34567899986422 24689999997654
|
| >d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.77 E-value=8.8e-19 Score=165.28 Aligned_cols=114 Identities=29% Similarity=0.502 Sum_probs=98.2
Q ss_pred cEEEEEEEEeecCC------CCCcEEEEEECCeEEeecCccCCCCCeEeeEEEEEEecCCCceEEEEEEecCCCCCCCCC
Q 001987 4 TRLYVYVLQGQDLL------AKDSYVKVQIGKHKSKSRILKNNSNPVWNEEFVFRVHNIDDEELVVSVFQHNDDSGLFGS 77 (985)
Q Consensus 4 ~~L~V~V~~Ar~L~------~~DPyv~v~l~~~~~kT~v~~~t~nP~wnE~f~f~v~~~~~~~L~~~V~D~d~~~~~~~~ 77 (985)
|.|+|+|++|+||+ .+||||++++++++++|+++++|+||.|||+|.|.+. .....|.|+|||++ . .+
T Consensus 6 G~L~V~v~~A~~L~~~d~~g~~Dpyv~v~~~~~~~~T~~~~~t~nP~wne~f~f~v~-~~~~~L~i~V~d~~---~--~~ 79 (126)
T d2ep6a1 6 GILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPIK-DIHDVLEVTVFDED---G--DK 79 (126)
T ss_dssp EEEEEEEEEEESCCCSSSSSCCCEEEEEEETTEEEECCCCSSCSSCCCCEEEEEEES-CTTCEEEEEEEEEE---T--TE
T ss_pred EEEEEEEEEeECCCCCCCCCCcCeEEEEEcCCeEEEEEeeCCceeEEEEEEEEEEEe-ccCceeEEEEEEcc---C--Cc
Confidence 68999999999999 6899999999999999999999999999999999995 34578999999999 4 57
Q ss_pred CCCeeEEEEEeCccccccCCCCCCCeEEEeecCCCCCCCCccccEEEEEEEEEe
Q 001987 78 SGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTNKDCGKILLTISLNG 131 (985)
Q Consensus 78 ~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~~G~I~lsl~~~~ 131 (985)
+|++||++.++|.++..+ ...|+.|. ....+ ...+|+|+|++++..
T Consensus 80 ~d~~lG~~~i~l~~l~~~-----~~~~~~l~-~~~~~--~~~~G~i~l~~~~i~ 125 (126)
T d2ep6a1 80 PPDFLGKVAIPLLSIRDG-----QPNCYVLK-NKDLE--QAFKGVIYLEMDLIY 125 (126)
T ss_dssp EEEECCBCEEEGGGCCSS-----CCEECCCB-CSCTT--SCCSSEEEEEEEEEE
T ss_pred CcceEEEEEEEHHHCCCC-----CceEEEcc-ccCCC--CceeEEEEEEEEEEE
Confidence 899999999999998754 35799987 43332 456799999998853
|
| >d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from cytosolic phospholipase A2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.75 E-value=3.4e-18 Score=161.20 Aligned_cols=113 Identities=23% Similarity=0.377 Sum_probs=97.2
Q ss_pred CCcEEEEEEEEeecCC---------CCCcEEEEEECC---eEEeecCccCCCCCeEeeEEEEEEecCCCceEEEEEEecC
Q 001987 2 VSTRLYVYVLQGQDLL---------AKDSYVKVQIGK---HKSKSRILKNNSNPVWNEEFVFRVHNIDDEELVVSVFQHN 69 (985)
Q Consensus 2 ~~~~L~V~V~~Ar~L~---------~~DPyv~v~l~~---~~~kT~v~~~t~nP~wnE~f~f~v~~~~~~~L~~~V~D~d 69 (985)
++.+|+|+|++|+||+ .+||||++++++ +++||+++++++||.|||+|.|.+.+.....|.|+|||+|
T Consensus 1 ss~~l~V~v~~a~~L~~~~~~d~~~~~Dpyv~v~l~~~~~~~~~T~~~~~t~nP~wne~f~f~i~~~~~~~L~v~V~d~d 80 (126)
T d1rlwa_ 1 SSHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDAN 80 (126)
T ss_dssp CCEEEEEEEEEEESCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTTSCCEEEEEEEECC
T ss_pred CCcEEEEEEEEccCCCCccccccCCCCCcEEEEEECCcccceeEeeecCCCccceeceeeeecccCcccCcEEEEEEECC
Confidence 4689999999999998 589999999975 5689999999999999999999997777789999999999
Q ss_pred CCCCCCCCCCCeeEEEEEeCccccccCCCCCCCeEEEeecCCCCCCCCccccEEEEEEEEEe
Q 001987 70 DDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTNKDCGKILLTISLNG 131 (985)
Q Consensus 70 ~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~~G~I~lsl~~~~ 131 (985)
. .+|++||++.++|.++..+ .....||+|. ....|+|++++++.+
T Consensus 81 ---~---~~d~~lG~~~i~L~~l~~~---~~~~~~~~L~--------~~~~g~i~~~l~~~~ 125 (126)
T d1rlwa_ 81 ---Y---VMDETLGTATFTVSSMKVG---EKKEVPFIFN--------QVTEMVLEMSLEVAS 125 (126)
T ss_dssp ---S---SCCEEEEEEEEEGGGSCTT---CEEEEEEEET--------TTEEEEEEEEEECCC
T ss_pred ---C---CCCCeEEEEEEEHHHccCC---CeEEEEEEcc--------CCCeEEEEEEEEEEe
Confidence 3 4789999999999999765 2457899998 234689998888743
|
| >d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain from protein kinase c (beta) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.75 E-value=1.9e-18 Score=164.42 Aligned_cols=105 Identities=25% Similarity=0.423 Sum_probs=92.8
Q ss_pred CCeEEEEEEEEeecCCCCCCCCCCCcEEEEEE-----CCEEEEeeeccCCCCCeEeEEEEEEeecC-CCCEEEEEEEecC
Q 001987 534 DGWVLTVALVEGVNLASSEMTGLSDPYVVFTC-----NGKTRTSSVQLQTCDPQWHDILEFDAMEE-PPSVLDVEVFDFD 607 (985)
Q Consensus 534 ~~g~L~V~v~~a~~L~~~d~~g~~DPyv~v~~-----~~~~~kT~~~~~tlnP~Wne~f~f~v~~~-~~~~L~v~V~D~d 607 (985)
..+.|.|+|++|+||+++|.+|.+||||++++ +.++++|+++++|+||+|||.|.|.+... ....|.|+|||+|
T Consensus 13 ~~~~L~V~V~~a~~L~~~d~~g~~DpYv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~L~i~V~d~d 92 (132)
T d1a25a_ 13 DREVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESDKDRRLSVEIWDWD 92 (132)
T ss_dssp SSSEEEEEEEEEESCCCCSTTSCCCEEEEEEEESCTTCSSCEECCCCSSCSSCEEEEEEEEECCSGGGGCEEEEEEEECC
T ss_pred cCCEEEEEEEeeeCCCCCCCCCCcCeEEEEEEccCCCCccccEEeeecCCCCCccceEEEEEeEccccCCEEeEEEEecC
Confidence 35689999999999999999999999999999 45688999999999999999999996433 3458999999999
Q ss_pred CCCCCCCccceEEEEeeccccCcccceEEEccc
Q 001987 608 GPFDQATSLGHAEINFLKHTSTELADMWVSLEG 640 (985)
Q Consensus 608 ~~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~~ 640 (985)
. +++|++||++.|+|.++..+ ..+.|++|.+
T Consensus 93 ~-~~~d~~iG~~~i~l~~l~~~-~~~~W~~L~~ 123 (132)
T d1a25a_ 93 L-TSRNDFMGSLSFGISELQKA-GVDGWFKLLS 123 (132)
T ss_dssp S-SSCCEEEEEEEEEHHHHTTC-CEEEEEECBC
T ss_pred C-CCCCcEeEEEEEeHHHcCCC-CCCeEEECCC
Confidence 8 79999999999999998655 3578999976
|
| >d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: E3 ubiquitin-protein ligase Itchy species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.74 E-value=5e-18 Score=161.34 Aligned_cols=117 Identities=19% Similarity=0.290 Sum_probs=94.9
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEECCEEEEeeeccCCCCCeEeEEEEEEeecCCCCEEEEEEEecCCCCCCCCc
Q 001987 536 WVLTVALVEGVNLASSEMTGLSDPYVVFTCNGKTRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGPFDQATS 615 (985)
Q Consensus 536 g~L~V~v~~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~~~~~tlnP~Wne~f~f~v~~~~~~~L~v~V~D~d~~~~~dd~ 615 (985)
+.|.|+|++|++|+..+..+.+||||++.++++.++|+++++++||+|||.|.|.+. +...|.|+|||+|. +++|++
T Consensus 6 ~~L~v~v~~A~~~~~~~~~~~~dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~~~--~~~~l~~~V~d~d~-~~~d~~ 82 (133)
T d2nq3a1 6 SQLQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTEKCNNTNSPKWKQPLTVIVT--PVSKLHFRVWSHQT-LKSDVL 82 (133)
T ss_dssp EEEEEEEEEEEECCCC--CCCCCEEEEEEETTEEEECCCCSSCSSCEEEEEEEEEEC--TTCEEEEEEEECCS-SSCCEE
T ss_pred eEEEEEEEEeECCCcCCCCCCcCeEEEEEECCeEEeeEEEEecccEEEcceEEEEEE--ecceeEEEEEEccC-CCCCce
Confidence 589999999999999998999999999999999999999999999999999999963 35789999999998 899999
Q ss_pred cceEEEEeecccc---CcccceEEE--ccc-cccCCcceeEEEEEe
Q 001987 616 LGHAEINFLKHTS---TELADMWVS--LEG-KLAQSAQSKVHLRIF 655 (985)
Q Consensus 616 lG~~~i~l~~l~~---~~~~~~w~~--L~~-~~~~~~~g~l~l~~~ 655 (985)
||++.|+|.++.. +.....|++ |.+ ..+....|+|.+.+.
T Consensus 83 iG~~~i~L~~l~~~~~~~~~~~~~~l~l~~~~~~~~~~G~L~v~l~ 128 (133)
T d2nq3a1 83 LGTAALDIYETLKSNNMKLEEVVVTLQLGGDKEPTETIGDLSICLD 128 (133)
T ss_dssp EEEEEEEHHHHHHHTTTEESSEEEEEEEEESSCTTSEEEEEEEEEE
T ss_pred EEEEEEEHHHhhhhcCCceeeEEEEEecCCCCCCceEEEEEEEEEe
Confidence 9999999998643 222334444 443 244445677777663
|
| >d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.73 E-value=9.9e-18 Score=158.98 Aligned_cols=117 Identities=19% Similarity=0.328 Sum_probs=93.3
Q ss_pred EEEEEEEEeecCCCC--CCCCCCCcEEEEEEC-----CEEEEeeecc-CCCCCeEeEEEEEEeecCCCCEEEEEEEecCC
Q 001987 537 VLTVALVEGVNLASS--EMTGLSDPYVVFTCN-----GKTRTSSVQL-QTCDPQWHDILEFDAMEEPPSVLDVEVFDFDG 608 (985)
Q Consensus 537 ~L~V~v~~a~~L~~~--d~~g~~DPyv~v~~~-----~~~~kT~~~~-~tlnP~Wne~f~f~v~~~~~~~L~v~V~D~d~ 608 (985)
.|+|+|++|++|+.. +.+|++||||++++. .++++|++++ +++||.|||+|+|.+..+....|.|+|||+|.
T Consensus 5 ~l~V~Vi~a~~L~~~~~~~~~~~DPyV~v~l~g~~~~~~~~~T~~v~~~~~nP~wne~f~f~~~~~~~~~L~~~V~D~d~ 84 (131)
T d1qasa2 5 RLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFEVTVPDLALVRFMVEDYDS 84 (131)
T ss_dssp EEEEEEEEEESCCCCC-----CCCEEEEEEEESSTTTCEEEECCCCSSCSSSCEEEEEEEEEESCGGGCEEEEEEEECCT
T ss_pred EEEEEEEEeeCCCCCCCCCCCCcCeEEEEEEccCCCCcEEEEEEEEecccCCceEEEEEEEEEEcchhceEEEEEEEecC
Confidence 799999999999754 557889999999993 5788999875 45899999999999766666789999999998
Q ss_pred CCCCCCccceEEEEeeccccCcccceEEEccccccCC-cceeEEEEEeee
Q 001987 609 PFDQATSLGHAEINFLKHTSTELADMWVSLEGKLAQS-AQSKVHLRIFLE 657 (985)
Q Consensus 609 ~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~-~~g~l~l~~~ls 657 (985)
+++|++||++.|+|.++..+ ..|++|.++.+.. ..+.|.+++.+.
T Consensus 85 -~~~d~~iG~~~i~l~~l~~g---~~~~~L~~~~g~~~~~~~L~v~i~~~ 130 (131)
T d1qasa2 85 -SSKNDFIGQSTIPWNSLKQG---YRHVHLLSKNGDQHPSATLFVKISIQ 130 (131)
T ss_dssp -TTCCEEEEEEEEEGGGBCCE---EEEEEEECTTSCEEEEEEEEEEEEEE
T ss_pred -CCCCcEEEEEEEEEeccCCC---CEEEECCCCCcCCCCCCEEEEEEEEE
Confidence 78999999999999998765 3599997654443 456777777653
|
| >d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from protein kinase C epsilon species: Rat (Rattus rattus) [TaxId: 10117]
Probab=99.72 E-value=1.3e-17 Score=159.25 Aligned_cols=115 Identities=18% Similarity=0.411 Sum_probs=98.9
Q ss_pred CCCcEEEEEEEEeecCC-----------------CCCcEEEEEECCeE-EeecCccCCCCCeEeeEEEEEEecCCCceEE
Q 001987 1 MVSTRLYVYVLQGQDLL-----------------AKDSYVKVQIGKHK-SKSRILKNNSNPVWNEEFVFRVHNIDDEELV 62 (985)
Q Consensus 1 ~~~~~L~V~V~~Ar~L~-----------------~~DPyv~v~l~~~~-~kT~v~~~t~nP~wnE~f~f~v~~~~~~~L~ 62 (985)
|.++.|+|+|++|++|+ .+||||+|+++++. .+|++++++.||.|||+|.|.+++ ...|.
T Consensus 3 ~~~G~L~v~I~~A~~L~~~~~~~~~~~~~~~~~~~~DPYv~v~l~~~~~~~T~~~~~t~~P~Wne~f~f~v~~--~~~l~ 80 (136)
T d1gmia_ 3 VFNGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAWHDEFVTDVCN--GRKIE 80 (136)
T ss_dssp CEEEEEEEEEEEEESCCCCHHHHCC-CCSSCCCCCCCEEEEEEETTEEEEECCCCSSCSSCEEEEEEEEEEEE--ECEEE
T ss_pred cEEEEEEEEEEEeECCCcccccccccccccCCCCCcCcEEEEEeCCCcCcEeeEEcCCCCccCccEEEEEEec--CCceE
Confidence 57899999999999997 37999999999866 689999999999999999999953 47899
Q ss_pred EEEEecCCCCCCCCCCCCeeEEEEEeCccccccCCCCCCCeEEEeecCCCCCCCCccccEEEEEEEEEecC
Q 001987 63 VSVFQHNDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTNKDCGKILLTISLNGKG 133 (985)
Q Consensus 63 ~~V~D~d~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~~G~I~lsl~~~~~~ 133 (985)
|+|||++ . .++|++||++.|+|.++..+.. .....|++|+ +.|+|+|.+.+.+.+
T Consensus 81 i~V~d~~---~--~~~d~~iG~~~i~l~~l~~~~~-~~~~~w~~L~----------p~G~v~l~v~~~~~~ 135 (136)
T d1gmia_ 81 LAVFHDA---P--IGYDDFVANCTIQFEELLQNGS-RHFEDWIDLE----------PEGKVYVIIDLSGSS 135 (136)
T ss_dssp EEEEECC---S--SSSCEEEEEEEEEHHHHTSTTC-SEEEEEEECB----------SSCEEEEEEEEEEEE
T ss_pred EEEEEec---C--CCCceeEEEEEEEHHHhhhcCC-cceeEEEeCC----------CCcEEEEEEEEEeCC
Confidence 9999999 4 5789999999999999976533 2356899997 359999999998764
|
| >d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain protein At1g63220 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.72 E-value=8.9e-18 Score=160.52 Aligned_cols=116 Identities=24% Similarity=0.491 Sum_probs=98.7
Q ss_pred CcEEEEEEEEeecCC------CCCcEEEEEECCeEEeecCcc-CCCCCeEeeEEEEEEecCCCceEEEEEEecCCCCCCC
Q 001987 3 STRLYVYVLQGQDLL------AKDSYVKVQIGKHKSKSRILK-NNSNPVWNEEFVFRVHNIDDEELVVSVFQHNDDSGLF 75 (985)
Q Consensus 3 ~~~L~V~V~~Ar~L~------~~DPyv~v~l~~~~~kT~v~~-~t~nP~wnE~f~f~v~~~~~~~L~~~V~D~d~~~~~~ 75 (985)
.+.|+|+|++|++|+ .+||||+++++++..+|++++ +++||.|||+|.|.+. .....|.|+|||+| +
T Consensus 9 ~G~L~V~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~t~~~~~~~~nP~Wne~f~f~v~-~~~~~L~v~V~d~d---~-- 82 (136)
T d1wfja_ 9 HGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVS-EGTTELKAKIFDKD---V-- 82 (136)
T ss_dssp EEEEEEEEEEEEECSSCCSSCSSCCCEEEESSSCEEECCCCTTCCSSCEEEEEEEEEEE-SSCCEEEEEECCSS---S--
T ss_pred cEEEEEEEEEeeCCCCCCCCCCCCccEEEEEeeeeEEEEEEecCCCcEEEeeEEEEEEc-CccceEEEEEEEec---C--
Confidence 478999999999999 789999999999999999987 5899999999999995 45567999999999 4
Q ss_pred CCCCCeeEEEEEeCccccccCCCCCCCeEEEeecCCCCCCCCccccEEEEEEEEEec
Q 001987 76 GSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTNKDCGKILLTISLNGK 132 (985)
Q Consensus 76 ~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~~G~I~lsl~~~~~ 132 (985)
.++|++||++.|||.++.... .....|+.|... .+.+|+|+|++.|.|.
T Consensus 83 ~~~d~~iG~~~i~L~~l~~~~--~~~~~~~~l~~~------~~~~G~i~l~l~~~p~ 131 (136)
T d1wfja_ 83 GTEDDAVGEATIPLEPVFVEG--SIPPTAYNVVKD------EEYKGEIWVALSFKPS 131 (136)
T ss_dssp CTTTCCSEEEEEESHHHHHHS--EEEEEEEEEEET------TEEEEEEEEEEEEEEC
T ss_pred CCCCCEEEEEEEEhHHhcccC--CcCcEEEEecCC------CccCEEEEEEEEEEeC
Confidence 578999999999999986542 234679998732 4568999999999875
|
| >d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptogamin I species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.72 E-value=9.3e-18 Score=161.80 Aligned_cols=105 Identities=23% Similarity=0.403 Sum_probs=94.5
Q ss_pred CeEEEEEEEEeecCCCCCCCCCCCcEEEEEE---CCEEEEeeeccCCCCCeEeEEEEEEeecC--CCCEEEEEEEecCCC
Q 001987 535 GWVLTVALVEGVNLASSEMTGLSDPYVVFTC---NGKTRTSSVQLQTCDPQWHDILEFDAMEE--PPSVLDVEVFDFDGP 609 (985)
Q Consensus 535 ~g~L~V~v~~a~~L~~~d~~g~~DPyv~v~~---~~~~~kT~~~~~tlnP~Wne~f~f~v~~~--~~~~L~v~V~D~d~~ 609 (985)
.+.|+|+|++|+||+++|..|.+||||++++ +.+.++|+++++++||+|||+|.|.+... ....|.|+|||+|.
T Consensus 33 ~~~L~V~V~~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~kT~~~~~t~~P~wne~f~f~i~~~~l~~~~L~i~V~d~d~- 111 (143)
T d1rsya_ 33 NNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDR- 111 (143)
T ss_dssp TTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETTCCSCEECCCCTTCSSCEEEEEEEECCCHHHHTTCEEEEEEEECCS-
T ss_pred CCEEEEEEEEccCCCCCCCCCCCCeEEEEEEcCCCCeeEEEEEeccccCcceeeeeEEEEEeeccCCceEEEEEEEcCC-
Confidence 4589999999999999999999999999999 45778999999999999999999986432 35689999999998
Q ss_pred CCCCCccceEEEEeeccccCcccceEEEccc
Q 001987 610 FDQATSLGHAEINFLKHTSTELADMWVSLEG 640 (985)
Q Consensus 610 ~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~~ 640 (985)
++++++||++.|+|.++..+...+.|++|+.
T Consensus 112 ~~~~~~iG~~~i~L~~~~~~~~~~~W~~L~s 142 (143)
T d1rsya_ 112 FSKHDIIGEFKVPMNTVDFGHVTEEWRDLQS 142 (143)
T ss_dssp SSCCEEEEEEEEEGGGCCCSSCEEEEEECBC
T ss_pred CCCCcEEEEEEEEchhccCCCCCccEEeCCC
Confidence 7899999999999999988888899999974
|
| >d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Piccolo species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.71 E-value=1.8e-18 Score=166.78 Aligned_cols=106 Identities=21% Similarity=0.401 Sum_probs=92.9
Q ss_pred CeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC--------------EEEEeeeccCCCCCeEeEEEEEEeec---CCCC
Q 001987 535 GWVLTVALVEGVNLASSEMTGLSDPYVVFTCNG--------------KTRTSSVQLQTCDPQWHDILEFDAME---EPPS 597 (985)
Q Consensus 535 ~g~L~V~v~~a~~L~~~d~~g~~DPyv~v~~~~--------------~~~kT~~~~~tlnP~Wne~f~f~v~~---~~~~ 597 (985)
.|.|.|+|++|+||+++|..|.+||||++++.. ++++|+++++++||.|||.|.|.+.. ....
T Consensus 17 ~~~L~V~V~~A~~L~~~d~~g~~DpyV~v~l~~~~~~~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~ 96 (142)
T d1rh8a_ 17 LGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEWNQTVIYKSISMEQLMKK 96 (142)
T ss_dssp TTEEEEEEEEEESCCCCSSSSCSCCEEEEEETTSSCCCEECCCCCHHHHTTTTTTHHHHSCEEEEEEEECSCCHHHHTTC
T ss_pred CCEEEEEEEEeECCCCcCCCCCCCcCEEEEEecCcccccccccCCCceeeeccCCcCCCCceeEEEEEEeeecccccCCC
Confidence 358999999999999999999999999999831 23579999999999999999998432 2456
Q ss_pred EEEEEEEecCCCCCCCCccceEEEEeeccccCcccceEEEcccc
Q 001987 598 VLDVEVFDFDGPFDQATSLGHAEINFLKHTSTELADMWVSLEGK 641 (985)
Q Consensus 598 ~L~v~V~D~d~~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~~~ 641 (985)
.|.|+|||+|. +++|++||++.|+|.++..+.....||+|.+.
T Consensus 97 ~L~i~V~d~d~-~~~~~~lG~~~i~L~~l~~~~~~~~W~~L~~~ 139 (142)
T d1rh8a_ 97 TLEVTVWDYDR-FSSNDFLGEVLIDLSSTSHLDNTPRWYPLKEQ 139 (142)
T ss_dssp EEEEEEEEECS-SSCEEEEEEEEEETTSCGGGTTCCEEEECBCC
T ss_pred EEEEEEEEecC-CCCCeeeEEEEEEhHHcCCCCCceEEEECcCc
Confidence 89999999998 79999999999999999888888999999874
|
| >d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: E3 ubiquitin-protein ligase Itchy species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.71 E-value=3.7e-17 Score=155.26 Aligned_cols=118 Identities=18% Similarity=0.280 Sum_probs=95.5
Q ss_pred CcEEEEEEEEeecCC------CCCcEEEEEECCeEEeecCccCCCCCeEeeEEEEEEecCCCceEEEEEEecCCCCCCCC
Q 001987 3 STRLYVYVLQGQDLL------AKDSYVKVQIGKHKSKSRILKNNSNPVWNEEFVFRVHNIDDEELVVSVFQHNDDSGLFG 76 (985)
Q Consensus 3 ~~~L~V~V~~Ar~L~------~~DPyv~v~l~~~~~kT~v~~~t~nP~wnE~f~f~v~~~~~~~L~~~V~D~d~~~~~~~ 76 (985)
.++|.|+|++|++|+ .+||||+|.++++.++|+++++|+||.|||.|.|.+. ....|.|+|||+| . .
T Consensus 5 ~~~L~v~v~~A~~~~~~~~~~~~dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~~~--~~~~l~~~V~d~d---~--~ 77 (133)
T d2nq3a1 5 KSQLQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTEKCNNTNSPKWKQPLTVIVT--PVSKLHFRVWSHQ---T--L 77 (133)
T ss_dssp CEEEEEEEEEEEECCCC--CCCCCEEEEEEETTEEEECCCCSSCSSCEEEEEEEEEEC--TTCEEEEEEEECC---S--S
T ss_pred ceEEEEEEEEeECCCcCCCCCCcCeEEEEEECCeEEeeEEEEecccEEEcceEEEEEE--ecceeEEEEEEcc---C--C
Confidence 368999999999998 6899999999999999999999999999999999984 3568999999999 4 5
Q ss_pred CCCCeeEEEEEeCccccccCCCCCCCeE--EEeecCCCCCCCCccccEEEEEEEEE
Q 001987 77 SSGELMGRVRVPVSSIAAEDNHMLPPTW--FSLETPKTRKFTNKDCGKILLTISLN 130 (985)
Q Consensus 77 ~~d~~lG~~~i~L~~l~~~~~~~~~~~W--~~L~~~~~~~~~~~~~G~I~lsl~~~ 130 (985)
++|++||++.++|.++....+......| +.|..+.. .....|+|.|.+.+.
T Consensus 78 ~~d~~iG~~~i~L~~l~~~~~~~~~~~~~~l~l~~~~~---~~~~~G~L~v~l~~~ 130 (133)
T d2nq3a1 78 KSDVLLGTAALDIYETLKSNNMKLEEVVVTLQLGGDKE---PTETIGDLSICLDGL 130 (133)
T ss_dssp SCCEEEEEEEEEHHHHHHHTTTEESSEEEEEEEEESSC---TTSEEEEEEEEEESE
T ss_pred CCCceEEEEEEEHHHhhhhcCCceeeEEEEEecCCCCC---CceEEEEEEEEEeeE
Confidence 7899999999999998654333333344 44443322 245689999888764
|
| >d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Unc-13 homolog A species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.70 E-value=8.7e-17 Score=150.86 Aligned_cols=99 Identities=19% Similarity=0.257 Sum_probs=85.8
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEECCEEEEeeeccCCCCCeEeEEEEEEeecCCCCEEEEEEEecCCCCCCCCc
Q 001987 536 WVLTVALVEGVNLASSEMTGLSDPYVVFTCNGKTRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGPFDQATS 615 (985)
Q Consensus 536 g~L~V~v~~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~~~~~tlnP~Wne~f~f~v~~~~~~~L~v~V~D~d~~~~~dd~ 615 (985)
++|.|+|++|++|+++| ++||||++++++++.+|++++ +.||+|||.|.|.+ .++...|.|+|||+|. + +|++
T Consensus 2 ~~L~V~v~~a~~l~~~~---~~dpYv~l~~~~~k~~T~~~k-~~nP~Wne~f~f~v-~~~~~~L~v~V~d~~~-~-~d~~ 74 (128)
T d2cjta1 2 SLLCVGVKKAKFDGAQE---KFNTYVTLKVQNVKSTTIAVR-GSQPSWEQDFMFEI-NRLDLGLTVEVWNKGL-I-WDTM 74 (128)
T ss_dssp EEEEEEEEEEECSSCGG---GCEEEEEEEETTEEEECCCEE-SSSCEEEEEEEEEE-CCCSSEEEEEEEECCS-S-CEEE
T ss_pred eEEEEEEEEEECCCCCC---CcCeEEEEEeCCEEEEEEEec-CCCCeEEEEEEEee-ccccceEEEEEEeCCC-c-CCcc
Confidence 58999999999999977 789999999999999999886 56999999999995 5567889999999997 4 6899
Q ss_pred cceEEEEeeccccC--cccceEEEcccc
Q 001987 616 LGHAEINFLKHTST--ELADMWVSLEGK 641 (985)
Q Consensus 616 lG~~~i~l~~l~~~--~~~~~w~~L~~~ 641 (985)
||++.|+|.++... ...+.|++|..+
T Consensus 75 lG~~~I~L~~l~~~~~~~~~~W~~L~~~ 102 (128)
T d2cjta1 75 VGTVWIPLRTIRQSNEEGPGEWLTLDSQ 102 (128)
T ss_dssp EEEEEEEGGGSCBCSSCCCCEEEECBC-
T ss_pred eEEEEEEehhhccCCCCCCCeeEECCcc
Confidence 99999999998643 346789999763
|
| >d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin III species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.68 E-value=3.7e-17 Score=154.77 Aligned_cols=106 Identities=22% Similarity=0.414 Sum_probs=89.5
Q ss_pred CCeEEEEEEEEeecCCCCCCCCCCCcEEEEEE---CCEEEEeeeccCCCCCeEeEEEEEEeecC--CCCEEEEEEEecCC
Q 001987 534 DGWVLTVALVEGVNLASSEMTGLSDPYVVFTC---NGKTRTSSVQLQTCDPQWHDILEFDAMEE--PPSVLDVEVFDFDG 608 (985)
Q Consensus 534 ~~g~L~V~v~~a~~L~~~d~~g~~DPyv~v~~---~~~~~kT~~~~~tlnP~Wne~f~f~v~~~--~~~~L~v~V~D~d~ 608 (985)
..+.|.|+|++|+||+.++.+|.+||||++++ +.++++|+++++++||+|||+|.|.+... ....|.|+|||+|.
T Consensus 16 ~~~~L~V~V~~a~~L~~~~~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~~~~~~L~v~V~d~~~ 95 (130)
T d1dqva1 16 GSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLAELAQRKLHFSVYDFDR 95 (130)
T ss_dssp SSCEEEEEEEEEECCCCCSTTSCCCEEEEEECTTSTTSCEECCCCCSCSSCEEEEEEEEECCGGGGSSCCCEEEEEECCS
T ss_pred CCCEEEEEEEeeeCCccccCCCCcceEEEEEEccCCCceEeceeEcCCCCeeeeeEEEEEEchHHcCCCeEEEEEEEcCC
Confidence 35689999999999999999999999999999 35678999999999999999999996432 34579999999998
Q ss_pred CCCCCCccceEEEEeecc-cc-CcccceEEEccc
Q 001987 609 PFDQATSLGHAEINFLKH-TS-TELADMWVSLEG 640 (985)
Q Consensus 609 ~~~~dd~lG~~~i~l~~l-~~-~~~~~~w~~L~~ 640 (985)
+++|++||++.|++... .. ......|++|..
T Consensus 96 -~~~d~~iG~~~i~~~~~l~~~~~~~~~W~~L~~ 128 (130)
T d1dqva1 96 -FSRHDLIGQVVLDNLLELAEQPPDRPLWRDILE 128 (130)
T ss_dssp -SSCCCEEEEEECCCTTGGGSSCSSCCCCEECBC
T ss_pred -CCCCceEEEEEECchhhhhcCCCCCcEEEeccc
Confidence 79999999999987543 22 234567999985
|
| >d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Unc-13 homolog A species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.67 E-value=3e-16 Score=147.11 Aligned_cols=117 Identities=22% Similarity=0.399 Sum_probs=90.8
Q ss_pred cEEEEEEEEeecCC---CCCcEEEEEECCeEEeecCccCCCCCeEeeEEEEEEecCCCceEEEEEEecCCCCCCCCCCCC
Q 001987 4 TRLYVYVLQGQDLL---AKDSYVKVQIGKHKSKSRILKNNSNPVWNEEFVFRVHNIDDEELVVSVFQHNDDSGLFGSSGE 80 (985)
Q Consensus 4 ~~L~V~V~~Ar~L~---~~DPyv~v~l~~~~~kT~v~~~t~nP~wnE~f~f~v~~~~~~~L~~~V~D~d~~~~~~~~~d~ 80 (985)
+.|.|+|++|++|. ++||||+|++++.+.+|.+++ +.||.|||+|.|.+.+ ....|.|+|||++ . .+|+
T Consensus 2 ~~L~V~v~~a~~l~~~~~~dpYv~l~~~~~k~~T~~~k-~~nP~Wne~f~f~v~~-~~~~L~v~V~d~~---~---~~d~ 73 (128)
T d2cjta1 2 SLLCVGVKKAKFDGAQEKFNTYVTLKVQNVKSTTIAVR-GSQPSWEQDFMFEINR-LDLGLTVEVWNKG---L---IWDT 73 (128)
T ss_dssp EEEEEEEEEEECSSCGGGCEEEEEEEETTEEEECCCEE-SSSCEEEEEEEEEECC-CSSEEEEEEEECC---S---SCEE
T ss_pred eEEEEEEEEEECCCCCCCcCeEEEEEeCCEEEEEEEec-CCCCeEEEEEEEeecc-ccceEEEEEEeCC---C---cCCc
Confidence 57999999999999 889999999999999999986 4599999999999954 4678999999998 3 3689
Q ss_pred eeEEEEEeCccccccCCCCCCCeEEEeecCCCCC------CCCccccEEEEEEEE
Q 001987 81 LMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRK------FTNKDCGKILLTISL 129 (985)
Q Consensus 81 ~lG~~~i~L~~l~~~~~~~~~~~W~~L~~~~~~~------~~~~~~G~I~lsl~~ 129 (985)
+||++.|||.++....+ .....||+|..+.... ........|++.++|
T Consensus 74 ~lG~~~I~L~~l~~~~~-~~~~~W~~L~~~~~~~~gei~gt~~~~~~~~ll~~~~ 127 (128)
T d2cjta1 74 MVGTVWIPLRTIRQSNE-EGPGEWLTLDSQAIMADSEICGTKDPTFHRILLDAHF 127 (128)
T ss_dssp EEEEEEEEGGGSCBCSS-CCCCEEEECBC----------CCSCCCCCEEEEEEEE
T ss_pred ceEEEEEEehhhccCCC-CCCCeeEECCccccCCCCEEEeeecCCCcEEEEEEEc
Confidence 99999999999976543 2356899997332110 112234467776665
|
| >d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.65 E-value=7.9e-16 Score=145.65 Aligned_cols=113 Identities=24% Similarity=0.370 Sum_probs=91.9
Q ss_pred CcEEEEEEEEeecCC--------CCCcEEEEEEC-----CeEEeecCccC-CCCCeEeeEEEEEEecCCCceEEEEEEec
Q 001987 3 STRLYVYVLQGQDLL--------AKDSYVKVQIG-----KHKSKSRILKN-NSNPVWNEEFVFRVHNIDDEELVVSVFQH 68 (985)
Q Consensus 3 ~~~L~V~V~~Ar~L~--------~~DPyv~v~l~-----~~~~kT~v~~~-t~nP~wnE~f~f~v~~~~~~~L~~~V~D~ 68 (985)
..+|+|+|++|++|+ ++||||+|++. ..+.+|+++++ ++||.|||+|.|.+..+....|+|+|||+
T Consensus 3 p~~l~V~Vi~a~~L~~~~~~~~~~~DPyV~v~l~g~~~~~~~~~T~~v~~~~~nP~wne~f~f~~~~~~~~~L~~~V~D~ 82 (131)
T d1qasa2 3 PERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFEVTVPDLALVRFMVEDY 82 (131)
T ss_dssp CEEEEEEEEEEESCCCCC-----CCCEEEEEEEESSTTTCEEEECCCCSSCSSSCEEEEEEEEEESCGGGCEEEEEEEEC
T ss_pred cEEEEEEEEEeeCCCCCCCCCCCCcCeEEEEEEccCCCCcEEEEEEEEecccCCceEEEEEEEEEEcchhceEEEEEEEe
Confidence 468999999999996 58999999993 46789998765 58999999999998666678899999999
Q ss_pred CCCCCCCCCCCCeeEEEEEeCccccccCCCCCCCeEEEeecCCCCCCCCccccEEEEEEEE
Q 001987 69 NDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTNKDCGKILLTISL 129 (985)
Q Consensus 69 d~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~~G~I~lsl~~ 129 (985)
| . .++|++||++.+||..+..+ .+|++|.++.+ + .-..|.|.+.+.+
T Consensus 83 d---~--~~~d~~iG~~~i~l~~l~~g------~~~~~L~~~~g-~--~~~~~~L~v~i~~ 129 (131)
T d1qasa2 83 D---S--SSKNDFIGQSTIPWNSLKQG------YRHVHLLSKNG-D--QHPSATLFVKISI 129 (131)
T ss_dssp C---T--TTCCEEEEEEEEEGGGBCCE------EEEEEEECTTS-C--EEEEEEEEEEEEE
T ss_pred c---C--CCCCcEEEEEEEEEeccCCC------CEEEECCCCCc-C--CCCCCEEEEEEEE
Confidence 9 4 57899999999999998643 56999984432 2 2346678887776
|
| >d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin XIII species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.64 E-value=3.9e-16 Score=149.25 Aligned_cols=104 Identities=19% Similarity=0.234 Sum_probs=90.2
Q ss_pred CeEEEEEEEEeecCCCCCCCCCCCcEEEEEEC----CEEEEeeeccCCCCCeEeEEEEEEeecC--CCCEEEEEEEecCC
Q 001987 535 GWVLTVALVEGVNLASSEMTGLSDPYVVFTCN----GKTRTSSVQLQTCDPQWHDILEFDAMEE--PPSVLDVEVFDFDG 608 (985)
Q Consensus 535 ~g~L~V~v~~a~~L~~~d~~g~~DPyv~v~~~----~~~~kT~~~~~tlnP~Wne~f~f~v~~~--~~~~L~v~V~D~d~ 608 (985)
.+.|.|+|++|+||+. .|.+||||++++. ...++|+++++++||+|||.|.|.+... ....|.|+|||+|.
T Consensus 25 ~~~L~V~v~~a~~L~~---~g~~dpyVkv~l~~~~~~~~~kT~v~~~~~~P~wne~f~f~v~~~~l~~~~L~~~V~d~~~ 101 (138)
T d1wfma_ 25 KAELFVTRLEAVTSNH---DGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPLAEEELPTATLTLTLRTCDR 101 (138)
T ss_dssp TTEEEEEEEEEECCCC---SSCCCEEEEEEEEETTEEEEEECCCCCCCSSEECSSCEEEECCTTSSTTCEEEEEEEECCS
T ss_pred CCEEEEEEEEcCCCCC---CCCcCcEEEEEECCCCCccceeeeEECCCCCceEeeeEEEEeeehhccceEEEEEEeeecc
Confidence 4589999999999954 5789999999994 2457899999999999999999996432 35689999999998
Q ss_pred CCCCCCccceEEEEeeccccCcccceEEEccccc
Q 001987 609 PFDQATSLGHAEINFLKHTSTELADMWVSLEGKL 642 (985)
Q Consensus 609 ~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~~~~ 642 (985)
++++++||++.|+|.++......+.|++|.+..
T Consensus 102 -~~~~~~iG~~~i~L~~l~~~~~~~~W~~L~~~~ 134 (138)
T d1wfma_ 102 -FSRHSVAGELRLGLDGTSVPLGAAQWGELKTSG 134 (138)
T ss_dssp -SCTTSCSEEEEEESSSSSSCTTCCEEEECCCCS
T ss_pred -cccceeeeEEEEEhHHccCCCCceEeEeCCCCC
Confidence 899999999999999998888889999998743
|
| >d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain from protein kinase c (beta) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.64 E-value=1.7e-16 Score=150.69 Aligned_cols=97 Identities=29% Similarity=0.516 Sum_probs=83.9
Q ss_pred CcEEEEEEEEeecCC------CCCcEEEEEEC-----CeEEeecCccCCCCCeEeeEEEEEEe-cCCCceEEEEEEecCC
Q 001987 3 STRLYVYVLQGQDLL------AKDSYVKVQIG-----KHKSKSRILKNNSNPVWNEEFVFRVH-NIDDEELVVSVFQHND 70 (985)
Q Consensus 3 ~~~L~V~V~~Ar~L~------~~DPyv~v~l~-----~~~~kT~v~~~t~nP~wnE~f~f~v~-~~~~~~L~~~V~D~d~ 70 (985)
.+.|.|+|++|+||+ .+||||+|++. ..+++|+++++|+||.|||+|.|.+. ......|.|.|||+|
T Consensus 14 ~~~L~V~V~~a~~L~~~d~~g~~DpYv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~L~i~V~d~d- 92 (132)
T d1a25a_ 14 REVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESDKDRRLSVEIWDWD- 92 (132)
T ss_dssp SSEEEEEEEEEESCCCCSTTSCCCEEEEEEEESCTTCSSCEECCCCSSCSSCEEEEEEEEECCSGGGGCEEEEEEEECC-
T ss_pred CCEEEEEEEeeeCCCCCCCCCCcCeEEEEEEccCCCCccccEEeeecCCCCCccceEEEEEeEccccCCEEeEEEEecC-
Confidence 578999999999998 68999999993 45689999999999999999999986 334568999999999
Q ss_pred CCCCCCCCCCeeEEEEEeCccccccCCCCCCCeEEEee
Q 001987 71 DSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLE 108 (985)
Q Consensus 71 ~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~ 108 (985)
. .++|++||++.|+|.++..+ ....||+|.
T Consensus 93 --~--~~~d~~iG~~~i~l~~l~~~----~~~~W~~L~ 122 (132)
T d1a25a_ 93 --L--TSRNDFMGSLSFGISELQKA----GVDGWFKLL 122 (132)
T ss_dssp --S--SSCCEEEEEEEEEHHHHTTC----CEEEEEECB
T ss_pred --C--CCCCcEeEEEEEeHHHcCCC----CCCeEEECC
Confidence 4 57899999999999998654 246899998
|
| >d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Regulating synaptic membrane exocytosis protein, rim2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.63 E-value=3.5e-16 Score=146.93 Aligned_cols=103 Identities=19% Similarity=0.403 Sum_probs=84.1
Q ss_pred CeEEEEEEEEeecCCCCCCCCCCCcEEEEEE-----CCEEEEeeeccCCCCCeEeEEEEEEeec-C--CCCEEEEEEEec
Q 001987 535 GWVLTVALVEGVNLASSEMTGLSDPYVVFTC-----NGKTRTSSVQLQTCDPQWHDILEFDAME-E--PPSVLDVEVFDF 606 (985)
Q Consensus 535 ~g~L~V~v~~a~~L~~~d~~g~~DPyv~v~~-----~~~~~kT~~~~~tlnP~Wne~f~f~v~~-~--~~~~L~v~V~D~ 606 (985)
.+.|.|+|++|+||++.+..+.+||||++.+ ...+++|+++++++||.|||.|.|.... . ....|.|+|||.
T Consensus 13 ~~~L~V~V~~a~~L~~~~~~~~~dpyVkv~l~~~~~~~~~~kT~~~~~t~~P~wne~f~f~~~~~~~l~~~~L~i~v~d~ 92 (125)
T d2bwqa1 13 GHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWDQ 92 (125)
T ss_dssp TTEEEEEEEEEESCCCCTTSCCBCEEEEEEEESSCSGGGEEECCCCSSBSSCEEEEEEEECSCCGGGGGGCEEEEEEEEC
T ss_pred CCEEEEEEEEeECCCCcCCCCCCCEEEEEEEeCCCCCccccccCEEcCCCCCEEccEEEEeeeChhhcCCCEEEEEEEEC
Confidence 4589999999999999999999999999998 2457899999999999999999997322 2 245899999999
Q ss_pred CCCC--CCCCccceEEEEeeccccCcccceEEEcc
Q 001987 607 DGPF--DQATSLGHAEINFLKHTSTELADMWVSLE 639 (985)
Q Consensus 607 d~~~--~~dd~lG~~~i~l~~l~~~~~~~~w~~L~ 639 (985)
|. + +++++||++.|+|.++.... ...||+|+
T Consensus 93 ~~-~~~~~~~~iG~~~i~l~~~~~~~-~~~Wy~L~ 125 (125)
T d2bwqa1 93 AR-VREEESEFLGEILIELETALLDD-EPHWYKLQ 125 (125)
T ss_dssp --------CEEEEEEEEEGGGCCCSS-CEEEEECC
T ss_pred CC-CCCCCCeeEEEEEEEchhcCCCC-CCEEEeCc
Confidence 96 4 34569999999999987655 46799985
|
| >d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptogamin I species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.60 E-value=1.3e-15 Score=146.43 Aligned_cols=98 Identities=29% Similarity=0.582 Sum_probs=85.4
Q ss_pred CcEEEEEEEEeecCC------CCCcEEEEEEC---CeEEeecCccCCCCCeEeeEEEEEEe--cCCCceEEEEEEecCCC
Q 001987 3 STRLYVYVLQGQDLL------AKDSYVKVQIG---KHKSKSRILKNNSNPVWNEEFVFRVH--NIDDEELVVSVFQHNDD 71 (985)
Q Consensus 3 ~~~L~V~V~~Ar~L~------~~DPyv~v~l~---~~~~kT~v~~~t~nP~wnE~f~f~v~--~~~~~~L~~~V~D~d~~ 71 (985)
.++|.|+|++|+||+ .+||||+|++. ..+.+|+++++++||.|||+|.|.+. +.....|.|+|||++
T Consensus 33 ~~~L~V~V~~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~kT~~~~~t~~P~wne~f~f~i~~~~l~~~~L~i~V~d~d-- 110 (143)
T d1rsya_ 33 NNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFD-- 110 (143)
T ss_dssp TTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETTCCSCEECCCCTTCSSCEEEEEEEECCCHHHHTTCEEEEEEEECC--
T ss_pred CCEEEEEEEEccCCCCCCCCCCCCeEEEEEEcCCCCeeEEEEEeccccCcceeeeeEEEEEeeccCCceEEEEEEEcC--
Confidence 568999999999998 68999999994 45689999999999999999999975 446788999999999
Q ss_pred CCCCCCCCCeeEEEEEeCccccccCCCCCCCeEEEee
Q 001987 72 SGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLE 108 (985)
Q Consensus 72 ~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~ 108 (985)
+ .+++++||++.|+|.++..+. ....||+|+
T Consensus 111 -~--~~~~~~iG~~~i~L~~~~~~~---~~~~W~~L~ 141 (143)
T d1rsya_ 111 -R--FSKHDIIGEFKVPMNTVDFGH---VTEEWRDLQ 141 (143)
T ss_dssp -S--SSCCEEEEEEEEEGGGCCCSS---CEEEEEECB
T ss_pred -C--CCCCcEEEEEEEEchhccCCC---CCccEEeCC
Confidence 4 578999999999999997652 356899997
|
| >d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.58 E-value=5.7e-15 Score=140.98 Aligned_cols=102 Identities=21% Similarity=0.300 Sum_probs=84.7
Q ss_pred eEEEEEEEEeecCCCCCCCC-CCCcEEEEEE---CCEEEEeeeccCCCCCeEeEEEEEEeecC---CCCEEEEEEEecCC
Q 001987 536 WVLTVALVEGVNLASSEMTG-LSDPYVVFTC---NGKTRTSSVQLQTCDPQWHDILEFDAMEE---PPSVLDVEVFDFDG 608 (985)
Q Consensus 536 g~L~V~v~~a~~L~~~d~~g-~~DPyv~v~~---~~~~~kT~~~~~tlnP~Wne~f~f~v~~~---~~~~L~v~V~D~d~ 608 (985)
..|+|+|++|+||+.+|..+ .+||||++++ +.++++|+++++++||.|||+|.|..... ....|+|+|||+|.
T Consensus 22 ~~L~V~V~~a~~L~~~d~~~~~~dpyV~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~L~~~V~d~d~ 101 (138)
T d1ugka_ 22 KAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYGIPYTQIQELALHFTILSFDR 101 (138)
T ss_dssp TEEEEEEEEEESCCCCBTTTTBCEEEEEEEEETTTCSEEECCCCSSCSSCEEEEEEEEECCCSTTGGGCEEEEEEEEECS
T ss_pred CEEEEEEEEecCCCCCCCCCCccceEEEEEEcCCCCEeEeCeeEeCCCCCceeeEEEEeeeCHHHcccceEEEEEEECCC
Confidence 47999999999999998765 4899999999 46788999999999999999999974332 24589999999998
Q ss_pred CCCCCCccceEEEEeeccccCc-ccceEEEc
Q 001987 609 PFDQATSLGHAEINFLKHTSTE-LADMWVSL 638 (985)
Q Consensus 609 ~~~~dd~lG~~~i~l~~l~~~~-~~~~w~~L 638 (985)
+++|++||++.|+|.++...+ ....|..+
T Consensus 102 -~~~~~~iG~~~i~L~~~~~~~~~~~~~~~~ 131 (138)
T d1ugka_ 102 -FSRDDIIGEVLIPLSGIELSEGKMLMNREI 131 (138)
T ss_dssp -SCCCCCCEEEEEECTTCCCTTCCEEEEEEC
T ss_pred -CCCCcEEEEEEEEcccccCCCCeEEEEeec
Confidence 899999999999999985433 34445554
|
| >d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Piccolo species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.58 E-value=5.9e-16 Score=148.77 Aligned_cols=98 Identities=27% Similarity=0.542 Sum_probs=84.3
Q ss_pred CcEEEEEEEEeecCC------CCCcEEEEEECC--------------eEEeecCccCCCCCeEeeEEEEE-Ee--cCCCc
Q 001987 3 STRLYVYVLQGQDLL------AKDSYVKVQIGK--------------HKSKSRILKNNSNPVWNEEFVFR-VH--NIDDE 59 (985)
Q Consensus 3 ~~~L~V~V~~Ar~L~------~~DPyv~v~l~~--------------~~~kT~v~~~t~nP~wnE~f~f~-v~--~~~~~ 59 (985)
.+.|.|+|++|+||+ .+||||+|++.+ +++||+++++++||.|||+|.|. ++ +....
T Consensus 17 ~~~L~V~V~~A~~L~~~d~~g~~DpyV~v~l~~~~~~~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~ 96 (142)
T d1rh8a_ 17 LGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEWNQTVIYKSISMEQLMKK 96 (142)
T ss_dssp TTEEEEEEEEEESCCCCSSSSCSCCEEEEEETTSSCCCEECCCCCHHHHTTTTTTHHHHSCEEEEEEEECSCCHHHHTTC
T ss_pred CCEEEEEEEEeECCCCcCCCCCCCcCEEEEEecCcccccccccCCCceeeeccCCcCCCCceeEEEEEEeeecccccCCC
Confidence 478999999999998 689999999952 23689999999999999999998 43 45678
Q ss_pred eEEEEEEecCCCCCCCCCCCCeeEEEEEeCccccccCCCCCCCeEEEee
Q 001987 60 ELVVSVFQHNDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLE 108 (985)
Q Consensus 60 ~L~~~V~D~d~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~ 108 (985)
.|.|.|||+| + .+++++||++.|+|.++.... ....||+|.
T Consensus 97 ~L~i~V~d~d---~--~~~~~~lG~~~i~L~~l~~~~---~~~~W~~L~ 137 (142)
T d1rh8a_ 97 TLEVTVWDYD---R--FSSNDFLGEVLIDLSSTSHLD---NTPRWYPLK 137 (142)
T ss_dssp EEEEEEEEEC---S--SSCEEEEEEEEEETTSCGGGT---TCCEEEECB
T ss_pred EEEEEEEEec---C--CCCCeeeEEEEEEhHHcCCCC---CceEEEECc
Confidence 8999999999 4 578999999999999998763 367899999
|
| >d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2b-domain of rabphilin species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.58 E-value=4.3e-15 Score=141.71 Aligned_cols=104 Identities=19% Similarity=0.348 Sum_probs=86.8
Q ss_pred CCeEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CEEEEeeeccCCCCCeEeEEEEEEeecC--CCCEEEEEEEec
Q 001987 534 DGWVLTVALVEGVNLASSEMTGLSDPYVVFTCN-----GKTRTSSVQLQTCDPQWHDILEFDAMEE--PPSVLDVEVFDF 606 (985)
Q Consensus 534 ~~g~L~V~v~~a~~L~~~d~~g~~DPyv~v~~~-----~~~~kT~~~~~tlnP~Wne~f~f~v~~~--~~~~L~v~V~D~ 606 (985)
..+.|.|+|++|+||+..+..|.+||||++++. ..+++|++++++.||+|||+|.|.+... ....|.|.|||+
T Consensus 13 ~~~~L~V~v~~a~nL~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l~~~~l~v~v~~~ 92 (137)
T d2cm5a1 13 QQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKHSDLAKKSLDISVWDY 92 (137)
T ss_dssp TTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETC---CCEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEEEEC
T ss_pred CCCEEEEEEEEEECCCCCCCCCCcCeEEEEEEEcCCccceeecCEeEcCCCCCccceEEEEEeEHHHccccEEEEEeeeC
Confidence 356899999999999999999999999999982 3568999999999999999999996432 245899999999
Q ss_pred CCCCCCCCccceEEEEeeccccCcccceEEEccc
Q 001987 607 DGPFDQATSLGHAEINFLKHTSTELADMWVSLEG 640 (985)
Q Consensus 607 d~~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~~ 640 (985)
|. ++++++||++.|++..+.. ....|++|..
T Consensus 93 ~~-~~~~~~iG~~~i~l~~~~~--~~~~W~~l~~ 123 (137)
T d2cm5a1 93 DI-GKSNDYIGGCQLGISAKGE--RLKHWYECLK 123 (137)
T ss_dssp CS-SSCCEEEEEEEEETTCCHH--HHHHHHHHHH
T ss_pred CC-CCCCCEEEEEEeCccccCc--chhhhhhHhh
Confidence 98 7999999999999976432 3345766654
|
| >d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.58 E-value=2.9e-15 Score=143.10 Aligned_cols=91 Identities=22% Similarity=0.327 Sum_probs=73.2
Q ss_pred CeEEEEEEEEeecCCCCCCCCCCCcEEEEEE--CC---EEEEeeeccCCCCCeEeEEEEEEeecCC--CCEEEEEEEecC
Q 001987 535 GWVLTVALVEGVNLASSEMTGLSDPYVVFTC--NG---KTRTSSVQLQTCDPQWHDILEFDAMEEP--PSVLDVEVFDFD 607 (985)
Q Consensus 535 ~g~L~V~v~~a~~L~~~d~~g~~DPyv~v~~--~~---~~~kT~~~~~tlnP~Wne~f~f~v~~~~--~~~L~v~V~D~d 607 (985)
.+.|.|+|++|+||++.|.++.+||||++++ ++ .+.+|++++++.||.|||+|.|.+.... ...|.|+|||+|
T Consensus 14 ~~~L~V~v~~a~~L~~~~~~~~~dpyvkv~l~~~~~~~~~~kT~~~~~t~~P~wne~f~F~v~~~~~~~~~l~i~v~d~~ 93 (138)
T d1w15a_ 14 TNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDIPCESLEEISVEFLVLDSE 93 (138)
T ss_dssp TTEEEEEEEEEESCC------CCCEEEEEEEEETTEEEEEEECCCCCSCSSEEEEEEEEEECCSSSSTTEEEEEEEEECC
T ss_pred CCEEEEEEEEeECCCCCCCCCCcCEEEEEEEeCCcccCccccceeECCCCCCeECcEEEEEecHHHhCccEEEEEEEeCC
Confidence 4689999999999999999999999999998 32 3568999999999999999999964322 347999999999
Q ss_pred CCCCCCCccceEEEEeecc
Q 001987 608 GPFDQATSLGHAEINFLKH 626 (985)
Q Consensus 608 ~~~~~dd~lG~~~i~l~~l 626 (985)
. ++++++||++.|++...
T Consensus 94 ~-~~~~~~iG~~~i~l~~~ 111 (138)
T d1w15a_ 94 R-GSRNEVIGRLVLGATAE 111 (138)
T ss_dssp T-TSCCEEEEEEEESTTCC
T ss_pred C-CCCCCEEEEEEEcchhC
Confidence 8 79999999999998763
|
| >d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin III species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.58 E-value=3.8e-15 Score=140.72 Aligned_cols=100 Identities=31% Similarity=0.453 Sum_probs=82.5
Q ss_pred CcEEEEEEEEeecCC------CCCcEEEEEEC---CeEEeecCccCCCCCeEeeEEEEEEe--cCCCceEEEEEEecCCC
Q 001987 3 STRLYVYVLQGQDLL------AKDSYVKVQIG---KHKSKSRILKNNSNPVWNEEFVFRVH--NIDDEELVVSVFQHNDD 71 (985)
Q Consensus 3 ~~~L~V~V~~Ar~L~------~~DPyv~v~l~---~~~~kT~v~~~t~nP~wnE~f~f~v~--~~~~~~L~~~V~D~d~~ 71 (985)
.++|.|+|++|+||+ .+||||++++. .++++|+++++|+||.|||+|.|.++ +.....|.|+|||++
T Consensus 17 ~~~L~V~V~~a~~L~~~~~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~~~~~~L~v~V~d~~-- 94 (130)
T d1dqva1 17 SDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLAELAQRKLHFSVYDFD-- 94 (130)
T ss_dssp SCEEEEEEEEEECCCCCSTTSCCCEEEEEECTTSTTSCEECCCCCSCSSCEEEEEEEEECCGGGGSSCCCEEEEEECC--
T ss_pred CCEEEEEEEeeeCCccccCCCCcceEEEEEEccCCCceEeceeEcCCCCeeeeeEEEEEEchHHcCCCeEEEEEEEcC--
Confidence 578999999999998 68999999995 35689999999999999999999985 345678999999999
Q ss_pred CCCCCCCCCeeEEEEEeCccccccCCCCCCCeEEEee
Q 001987 72 SGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLE 108 (985)
Q Consensus 72 ~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~ 108 (985)
+ .+++++||++.|++........ .....|++|.
T Consensus 95 -~--~~~d~~iG~~~i~~~~~l~~~~-~~~~~W~~L~ 127 (130)
T d1dqva1 95 -R--FSRHDLIGQVVLDNLLELAEQP-PDRPLWRDIL 127 (130)
T ss_dssp -S--SSCCCEEEEEECCCTTGGGSSC-SSCCCCEECB
T ss_pred -C--CCCCceEEEEEECchhhhhcCC-CCCcEEEecc
Confidence 4 5799999999998655433311 1245699998
|
| >d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptogamin I species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.57 E-value=5.3e-15 Score=144.51 Aligned_cols=105 Identities=25% Similarity=0.446 Sum_probs=87.7
Q ss_pred CeEEEEEEEEeecCCCCCCCCCCCcEEEEEEC--C---EEEEeeeccCCCCCeEeEEEEEEeecC--CCCEEEEEEEecC
Q 001987 535 GWVLTVALVEGVNLASSEMTGLSDPYVVFTCN--G---KTRTSSVQLQTCDPQWHDILEFDAMEE--PPSVLDVEVFDFD 607 (985)
Q Consensus 535 ~g~L~V~v~~a~~L~~~d~~g~~DPyv~v~~~--~---~~~kT~~~~~tlnP~Wne~f~f~v~~~--~~~~L~v~V~D~d 607 (985)
.+.|.|+|++|+||+..+..+.+||||++++. + ...+|+++++++||+|||+|.|.+... ....|.|+|||+|
T Consensus 24 ~~~L~V~V~~a~~L~~~~~~~~~dpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~F~v~~~~l~~~~l~i~v~d~~ 103 (157)
T d1uowa_ 24 AGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDYD 103 (157)
T ss_dssp TTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEEEECC
T ss_pred CCEEEEEEEEEEEcccccCCCCCCeeEEEEEecCCccccceecccccCCCCcccCCeEEEEecHHHcCccEEEEEEcccC
Confidence 35899999999999999999999999999983 2 345899999999999999999996443 2458999999999
Q ss_pred CCCCCCCccceEEEEeeccc------------cCcccceEEEccc
Q 001987 608 GPFDQATSLGHAEINFLKHT------------STELADMWVSLEG 640 (985)
Q Consensus 608 ~~~~~dd~lG~~~i~l~~l~------------~~~~~~~w~~L~~ 640 (985)
. ++++++||++.|++.... +......|++|..
T Consensus 104 ~-~~~~~~iG~~~i~l~~~~~~~~hW~~~~~~~~~~v~~Wh~L~~ 147 (157)
T d1uowa_ 104 K-IGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHTLQV 147 (157)
T ss_dssp S-SSCCCEEEEEEEETTCCHHHHHHHHHHHHSTTCCEEEEEECBC
T ss_pred C-CCCCceeEEEEEecccCChhHHHHHHHHhCCCCceeEeEeCCC
Confidence 8 899999999999997532 2234567888875
|
| >d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Regulating synaptic membrane exocytosis protein, rim2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.57 E-value=3.6e-15 Score=139.90 Aligned_cols=100 Identities=25% Similarity=0.613 Sum_probs=79.6
Q ss_pred CCcEEEEEEEEeecCC------CCCcEEEEEEC-----CeEEeecCccCCCCCeEeeEEEEE-Ee--cCCCceEEEEEEe
Q 001987 2 VSTRLYVYVLQGQDLL------AKDSYVKVQIG-----KHKSKSRILKNNSNPVWNEEFVFR-VH--NIDDEELVVSVFQ 67 (985)
Q Consensus 2 ~~~~L~V~V~~Ar~L~------~~DPyv~v~l~-----~~~~kT~v~~~t~nP~wnE~f~f~-v~--~~~~~~L~~~V~D 67 (985)
..++|.|+|++|+||+ .+||||+|++. ..+++|+++++++||.|||+|.|. ++ +.....|.|+|||
T Consensus 12 ~~~~L~V~V~~a~~L~~~~~~~~~dpyVkv~l~~~~~~~~~~kT~~~~~t~~P~wne~f~f~~~~~~~l~~~~L~i~v~d 91 (125)
T d2bwqa1 12 VGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWD 91 (125)
T ss_dssp TTTEEEEEEEEEESCCCCTTSCCBCEEEEEEEESSCSGGGEEECCCCSSBSSCEEEEEEEECSCCGGGGGGCEEEEEEEE
T ss_pred CCCEEEEEEEEeECCCCcCCCCCCCEEEEEEEeCCCCCccccccCEEcCCCCCEEccEEEEeeeChhhcCCCEEEEEEEE
Confidence 3579999999999998 68999999994 345899999999999999999997 54 3456789999999
Q ss_pred cCCCCCCCCCCCCeeEEEEEeCccccccCCCCCCCeEEEee
Q 001987 68 HNDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLE 108 (985)
Q Consensus 68 ~d~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~ 108 (985)
.+ ++..+++++||++.++|.++...+ ...||+|+
T Consensus 92 ~~---~~~~~~~~~iG~~~i~l~~~~~~~----~~~Wy~L~ 125 (125)
T d2bwqa1 92 QA---RVREEESEFLGEILIELETALLDD----EPHWYKLQ 125 (125)
T ss_dssp C----------CEEEEEEEEEGGGCCCSS----CEEEEECC
T ss_pred CC---CCCCCCCeeEEEEEEEchhcCCCC----CCEEEeCc
Confidence 99 422245679999999999987653 35799985
|
| >d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin XIII species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.56 E-value=7.8e-15 Score=140.00 Aligned_cols=98 Identities=16% Similarity=0.296 Sum_probs=85.9
Q ss_pred CcEEEEEEEEeecCC---CCCcEEEEEECC----eEEeecCccCCCCCeEeeEEEEEEe--cCCCceEEEEEEecCCCCC
Q 001987 3 STRLYVYVLQGQDLL---AKDSYVKVQIGK----HKSKSRILKNNSNPVWNEEFVFRVH--NIDDEELVVSVFQHNDDSG 73 (985)
Q Consensus 3 ~~~L~V~V~~Ar~L~---~~DPyv~v~l~~----~~~kT~v~~~t~nP~wnE~f~f~v~--~~~~~~L~~~V~D~d~~~~ 73 (985)
.++|.|+|++|+||+ .+||||+|++.+ ..++|++++++.||.|||+|.|.++ +.....|.|+|||++ +
T Consensus 25 ~~~L~V~v~~a~~L~~~g~~dpyVkv~l~~~~~~~~~kT~v~~~~~~P~wne~f~f~v~~~~l~~~~L~~~V~d~~---~ 101 (138)
T d1wfma_ 25 KAELFVTRLEAVTSNHDGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPLAEEELPTATLTLTLRTCD---R 101 (138)
T ss_dssp TTEEEEEEEEEECCCCSSCCCEEEEEEEEETTEEEEEECCCCCCCSSEECSSCEEEECCTTSSTTCEEEEEEEECC---S
T ss_pred CCEEEEEEEEcCCCCCCCCcCcEEEEEECCCCCccceeeeEECCCCCceEeeeEEEEeeehhccceEEEEEEeeec---c
Confidence 468999999999999 889999999953 3488999999999999999999986 456788999999999 4
Q ss_pred CCCCCCCeeEEEEEeCccccccCCCCCCCeEEEee
Q 001987 74 LFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLE 108 (985)
Q Consensus 74 ~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~ 108 (985)
.+++++||++.|+|.++.... ....|+.|.
T Consensus 102 --~~~~~~iG~~~i~L~~l~~~~---~~~~W~~L~ 131 (138)
T d1wfma_ 102 --FSRHSVAGELRLGLDGTSVPL---GAAQWGELK 131 (138)
T ss_dssp --SCTTSCSEEEEEESSSSSSCT---TCCEEEECC
T ss_pred --cccceeeeEEEEEhHHccCCC---CceEeEeCC
Confidence 578999999999999997552 367899998
|
| >d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from protein kinase C delta species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.50 E-value=2.1e-14 Score=133.68 Aligned_cols=107 Identities=13% Similarity=0.234 Sum_probs=83.4
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCE-----EEEeeeccCCCCCeEeEEEEEEeecCCCCEEEEEEEecCCCCC
Q 001987 537 VLTVALVEGVNLASSEMTGLSDPYVVFTCNGK-----TRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGPFD 611 (985)
Q Consensus 537 ~L~V~v~~a~~L~~~d~~g~~DPyv~v~~~~~-----~~kT~~~~~tlnP~Wne~f~f~v~~~~~~~L~v~V~D~d~~~~ 611 (985)
.|+|.+....--+.+...|.+||||.|++++. ..+|+++++|+||+|||+|+|.+. ....|.|.|||+|
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~dPY~~v~l~~~~~~~~~~~t~~~kkT~nP~WnE~F~~~v~--~~~~l~i~V~d~d---- 77 (123)
T d1bdya_ 4 FLRISFNSYELGSLQAEDDASQPFCAVKMKEALTTDRGKTLVQKKPTMYPEWKSTFDAHIY--EGRVIQIVLMRAA---- 77 (123)
T ss_dssp EEEEEEEEEECCTTCCCCCSCCCEEEEEEEEECCGGGTTBEEECSCCBCCCTTCEEEEECC--TTCEEEEEEEEET----
T ss_pred eEEEEEEEeecccCCCCCCCCCCEEEEEEcCccccccceEEEEeCCCCCcccceEEEEEEc--cccEEEEEEEEcc----
Confidence 45555555433334556889999999999542 457889999999999999999963 3578999999987
Q ss_pred CCCccceEEEEeecccc-----CcccceEEEccccccCCcceeEEEEEee
Q 001987 612 QATSLGHAEINFLKHTS-----TELADMWVSLEGKLAQSAQSKVHLRIFL 656 (985)
Q Consensus 612 ~dd~lG~~~i~l~~l~~-----~~~~~~w~~L~~~~~~~~~g~l~l~~~l 656 (985)
++++|.+.|++..+.. +...+.|++|+ .+|+|++.+.+
T Consensus 78 -d~~~g~~~i~l~~l~~~~~~~~~~~~~W~~L~------~~Gkl~l~v~~ 120 (123)
T d1bdya_ 78 -EDPMSEVTVGVSVLAERCKKNNGKAEFWLDLQ------PQAKVLMCVQY 120 (123)
T ss_dssp -TEEEEEEEEEHHHHHHHHHTTTTEEEEEEECB------SSCEEEEEEEE
T ss_pred -ccccCccEEehhheeeccccCCCcccEEEeCC------CCEEEEEEEEE
Confidence 4799999999998743 55778999997 47889888843
|
| >d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2b-domain of rabphilin species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.49 E-value=5.7e-14 Score=133.78 Aligned_cols=86 Identities=28% Similarity=0.474 Sum_probs=75.5
Q ss_pred CcEEEEEEEEeecCC------CCCcEEEEEEC-----CeEEeecCccCCCCCeEeeEEEEEEe--cCCCceEEEEEEecC
Q 001987 3 STRLYVYVLQGQDLL------AKDSYVKVQIG-----KHKSKSRILKNNSNPVWNEEFVFRVH--NIDDEELVVSVFQHN 69 (985)
Q Consensus 3 ~~~L~V~V~~Ar~L~------~~DPyv~v~l~-----~~~~kT~v~~~t~nP~wnE~f~f~v~--~~~~~~L~~~V~D~d 69 (985)
.++|.|+|++|+||+ .+||||+|++. ..++||++++++.||.|||+|.|.++ +.....|.|.|||.+
T Consensus 14 ~~~L~V~v~~a~nL~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l~~~~l~v~v~~~~ 93 (137)
T d2cm5a1 14 QGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKHSDLAKKSLDISVWDYD 93 (137)
T ss_dssp TTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETC---CCEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEEEECC
T ss_pred CCEEEEEEEEEECCCCCCCCCCcCeEEEEEEEcCCccceeecCEeEcCCCCCccceEEEEEeEHHHccccEEEEEeeeCC
Confidence 578999999999998 68999999984 24589999999999999999999986 445678999999999
Q ss_pred CCCCCCCCCCCeeEEEEEeCcccc
Q 001987 70 DDSGLFGSSGELMGRVRVPVSSIA 93 (985)
Q Consensus 70 ~~~~~~~~~d~~lG~~~i~L~~l~ 93 (985)
. .+++++||++.+++.++.
T Consensus 94 ---~--~~~~~~iG~~~i~l~~~~ 112 (137)
T d2cm5a1 94 ---I--GKSNDYIGGCQLGISAKG 112 (137)
T ss_dssp ---S--SSCCEEEEEEEEETTCCH
T ss_pred ---C--CCCCCEEEEEEeCccccC
Confidence 4 578999999999998754
|
| >d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptogamin I species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.48 E-value=6.8e-14 Score=136.45 Aligned_cols=102 Identities=31% Similarity=0.513 Sum_probs=83.7
Q ss_pred CCcEEEEEEEEeecCC------CCCcEEEEEECC-----eEEeecCccCCCCCeEeeEEEEEEe--cCCCceEEEEEEec
Q 001987 2 VSTRLYVYVLQGQDLL------AKDSYVKVQIGK-----HKSKSRILKNNSNPVWNEEFVFRVH--NIDDEELVVSVFQH 68 (985)
Q Consensus 2 ~~~~L~V~V~~Ar~L~------~~DPyv~v~l~~-----~~~kT~v~~~t~nP~wnE~f~f~v~--~~~~~~L~~~V~D~ 68 (985)
..++|.|+|++|+||+ .+||||+|++.+ .+++|++++++.||+|||+|.|.++ +.....|.|.|||+
T Consensus 23 ~~~~L~V~V~~a~~L~~~~~~~~~dpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~F~v~~~~l~~~~l~i~v~d~ 102 (157)
T d1uowa_ 23 TAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDY 102 (157)
T ss_dssp TTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEEEEC
T ss_pred CCCEEEEEEEEEEEcccccCCCCCCeeEEEEEecCCccccceecccccCCCCcccCCeEEEEecHHHcCccEEEEEEccc
Confidence 3579999999999998 789999999953 2468999999999999999999986 33567899999999
Q ss_pred CCCCCCCCCCCCeeEEEEEeCcccccc---------CCCCCCCeEEEee
Q 001987 69 NDDSGLFGSSGELMGRVRVPVSSIAAE---------DNHMLPPTWFSLE 108 (985)
Q Consensus 69 d~~~~~~~~~d~~lG~~~i~L~~l~~~---------~~~~~~~~W~~L~ 108 (985)
+ + .+++++||++.|++.....+ ..+.+...||+|.
T Consensus 103 ~---~--~~~~~~iG~~~i~l~~~~~~~~hW~~~~~~~~~~v~~Wh~L~ 146 (157)
T d1uowa_ 103 D---K--IGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHTLQ 146 (157)
T ss_dssp C---S--SSCCCEEEEEEEETTCCHHHHHHHHHHHHSTTCCEEEEEECB
T ss_pred C---C--CCCCceeEEEEEecccCChhHHHHHHHHhCCCCceeEeEeCC
Confidence 9 4 57899999999999764321 1223456899998
|
| >d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.48 E-value=6.7e-14 Score=133.45 Aligned_cols=101 Identities=29% Similarity=0.440 Sum_probs=81.1
Q ss_pred CcEEEEEEEEeecCC------CCCcEEEEEEC--C---eEEeecCccCCCCCeEeeEEEEEEe--cCCCceEEEEEEecC
Q 001987 3 STRLYVYVLQGQDLL------AKDSYVKVQIG--K---HKSKSRILKNNSNPVWNEEFVFRVH--NIDDEELVVSVFQHN 69 (985)
Q Consensus 3 ~~~L~V~V~~Ar~L~------~~DPyv~v~l~--~---~~~kT~v~~~t~nP~wnE~f~f~v~--~~~~~~L~~~V~D~d 69 (985)
+++|.|+|++|+||+ .+||||+|++. . .+++|++++++.||.|||+|.|.++ ......|.|.|||++
T Consensus 14 ~~~L~V~v~~a~~L~~~~~~~~~dpyvkv~l~~~~~~~~~~kT~~~~~t~~P~wne~f~F~v~~~~~~~~~l~i~v~d~~ 93 (138)
T d1w15a_ 14 TNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDIPCESLEEISVEFLVLDSE 93 (138)
T ss_dssp TTEEEEEEEEEESCC------CCCEEEEEEEEETTEEEEEEECCCCCSCSSEEEEEEEEEECCSSSSTTEEEEEEEEECC
T ss_pred CCEEEEEEEEeECCCCCCCCCCcCEEEEEEEeCCcccCccccceeECCCCCCeECcEEEEEecHHHhCccEEEEEEEeCC
Confidence 578999999999998 68999999993 2 3478999999999999999999985 345567999999999
Q ss_pred CCCCCCCCCCCeeEEEEEeCcccccc---------CCCCCCCeEEEee
Q 001987 70 DDSGLFGSSGELMGRVRVPVSSIAAE---------DNHMLPPTWFSLE 108 (985)
Q Consensus 70 ~~~~~~~~~d~~lG~~~i~L~~l~~~---------~~~~~~~~W~~L~ 108 (985)
. .+++++||++.+++.....+ ..+.+...|++|.
T Consensus 94 ---~--~~~~~~iG~~~i~l~~~~~~~~hW~~ll~~~~k~i~~Wh~L~ 136 (138)
T d1w15a_ 94 ---R--GSRNEVIGRLVLGATAEGSGGGHWKEICDFPRRQIAKWHMLC 136 (138)
T ss_dssp ---T--TSCCEEEEEEEESTTCCSHHHHHHHHHHHSTTCCEEEEEECB
T ss_pred ---C--CCCCCEEEEEEEcchhCCchHHHHHHHHhCCCCeeeECeEcc
Confidence 4 57899999999998764322 1123445777775
|
| >d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.48 E-value=1e-13 Score=132.13 Aligned_cols=88 Identities=27% Similarity=0.530 Sum_probs=76.1
Q ss_pred CcEEEEEEEEeecCC-------CCCcEEEEEEC---CeEEeecCccCCCCCeEeeEEEEE-Ee--cCCCceEEEEEEecC
Q 001987 3 STRLYVYVLQGQDLL-------AKDSYVKVQIG---KHKSKSRILKNNSNPVWNEEFVFR-VH--NIDDEELVVSVFQHN 69 (985)
Q Consensus 3 ~~~L~V~V~~Ar~L~-------~~DPyv~v~l~---~~~~kT~v~~~t~nP~wnE~f~f~-v~--~~~~~~L~~~V~D~d 69 (985)
.+.|.|+|++|+||+ .+||||++++. ..+++|+++++++||.|||+|.|. ++ ......|+|.|||+|
T Consensus 21 ~~~L~V~V~~a~~L~~~d~~~~~~dpyV~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~L~~~V~d~d 100 (138)
T d1ugka_ 21 RKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYGIPYTQIQELALHFTILSFD 100 (138)
T ss_dssp GTEEEEEEEEEESCCCCBTTTTBCEEEEEEEEETTTCSEEECCCCSSCSSCEEEEEEEEECCCSTTGGGCEEEEEEEEEC
T ss_pred CCEEEEEEEEecCCCCCCCCCCccceEEEEEEcCCCCEeEeCeeEeCCCCCceeeEEEEeeeCHHHcccceEEEEEEECC
Confidence 468999999999998 37999999994 456899999999999999999997 53 234578999999999
Q ss_pred CCCCCCCCCCCeeEEEEEeCcccccc
Q 001987 70 DDSGLFGSSGELMGRVRVPVSSIAAE 95 (985)
Q Consensus 70 ~~~~~~~~~d~~lG~~~i~L~~l~~~ 95 (985)
+ .+++++||++.++|.++...
T Consensus 101 ---~--~~~~~~iG~~~i~L~~~~~~ 121 (138)
T d1ugka_ 101 ---R--FSRDDIIGEVLIPLSGIELS 121 (138)
T ss_dssp ---S--SCCCCCCEEEEEECTTCCCT
T ss_pred ---C--CCCCcEEEEEEEEcccccCC
Confidence 5 57899999999999998754
|
| >d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin III species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.47 E-value=4.7e-15 Score=142.92 Aligned_cols=104 Identities=25% Similarity=0.439 Sum_probs=86.2
Q ss_pred CeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----EEEEeeeccCCCCCeEeEEEEEEeec--CCCCEEEEEEEecC
Q 001987 535 GWVLTVALVEGVNLASSEMTGLSDPYVVFTCNG-----KTRTSSVQLQTCDPQWHDILEFDAME--EPPSVLDVEVFDFD 607 (985)
Q Consensus 535 ~g~L~V~v~~a~~L~~~d~~g~~DPyv~v~~~~-----~~~kT~~~~~tlnP~Wne~f~f~v~~--~~~~~L~v~V~D~d 607 (985)
.|.|.|+|++|+||+..+..|.+||||++++.. .+.+|+++++++||.|||.|.|.+.. .....|.|.|||+|
T Consensus 19 ~~~L~V~V~~a~nL~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~~P~wne~f~F~v~~~~~~~~~l~v~v~d~~ 98 (145)
T d1dqva2 19 AGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAPESVENVGLSIAVVDYD 98 (145)
T ss_dssp TTEEEEEEEEEESCCCCSSSSCCCEEEEECCCTTCCTTSCEECCCCCSCSSCEEEECCCCCCCSGGGGSCCCCCEEEECC
T ss_pred CCEEEEEEEEEeCCCCcCCCCCcCceEEEEEccCCccceeecCEEEeCCCCceecceEEEEEehhhcCCCEEEEEEEecC
Confidence 468999999999999999999999999999852 25789999999999999999998642 23457999999999
Q ss_pred CCCCCCCccceEEEEeeccccCcccceEEEccc
Q 001987 608 GPFDQATSLGHAEINFLKHTSTELADMWVSLEG 640 (985)
Q Consensus 608 ~~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~~ 640 (985)
. +++|++||++.|++..+... ....|++|..
T Consensus 99 ~-~~~~~~iG~~~i~l~~~~~~-~~~~W~~l~~ 129 (145)
T d1dqva2 99 C-IGHNEVIGVCRVGPEAADPH-GREHWAEMLA 129 (145)
T ss_dssp S-SSCCEEEEECCCSSCTTCHH-HHHHHHTSSS
T ss_pred C-CCCCcEEEEEEECchHcCch-hhHHHHHHHh
Confidence 8 79999999999999876432 2355666643
|
| >d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from protein kinase C delta species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.44 E-value=9.7e-14 Score=129.11 Aligned_cols=106 Identities=18% Similarity=0.275 Sum_probs=83.8
Q ss_pred EEEEEEEEeecCC----CCCcEEEEEECCe-----EEeecCccCCCCCeEeeEEEEEEecCCCceEEEEEEecCCCCCCC
Q 001987 5 RLYVYVLQGQDLL----AKDSYVKVQIGKH-----KSKSRILKNNSNPVWNEEFVFRVHNIDDEELVVSVFQHNDDSGLF 75 (985)
Q Consensus 5 ~L~V~V~~Ar~L~----~~DPyv~v~l~~~-----~~kT~v~~~t~nP~wnE~f~f~v~~~~~~~L~~~V~D~d~~~~~~ 75 (985)
++.|.++.+..++ .+||||.|++.+. .++|+++++|+||+|||+|.|.+. ..+.|.|.|||+|
T Consensus 6 ~~~~~~~~~~~~~~~~~~~dPY~~v~l~~~~~~~~~~~t~~~kkT~nP~WnE~F~~~v~--~~~~l~i~V~d~d------ 77 (123)
T d1bdya_ 6 RISFNSYELGSLQAEDDASQPFCAVKMKEALTTDRGKTLVQKKPTMYPEWKSTFDAHIY--EGRVIQIVLMRAA------ 77 (123)
T ss_dssp EEEEEEEECCTTCCCCCSCCCEEEEEEEEECCGGGTTBEEECSCCBCCCTTCEEEEECC--TTCEEEEEEEEET------
T ss_pred EEEEEEeecccCCCCCCCCCCEEEEEEcCccccccceEEEEeCCCCCcccceEEEEEEc--cccEEEEEEEEcc------
Confidence 3455556666655 7999999999642 367889999999999999999983 4578999999987
Q ss_pred CCCCCeeEEEEEeCcccccc--CCCCCCCeEEEeecCCCCCCCCccccEEEEEEEEEe
Q 001987 76 GSSGELMGRVRVPVSSIAAE--DNHMLPPTWFSLETPKTRKFTNKDCGKILLTISLNG 131 (985)
Q Consensus 76 ~~~d~~lG~~~i~L~~l~~~--~~~~~~~~W~~L~~~~~~~~~~~~~G~I~lsl~~~~ 131 (985)
++++|.+.+++..+... ........|++|+ +.|+|++.++|..
T Consensus 78 ---d~~~g~~~i~l~~l~~~~~~~~~~~~~W~~L~----------~~Gkl~l~v~~f~ 122 (123)
T d1bdya_ 78 ---EDPMSEVTVGVSVLAERCKKNNGKAEFWLDLQ----------PQAKVLMCVQYFL 122 (123)
T ss_dssp ---TEEEEEEEEEHHHHHHHHHTTTTEEEEEEECB----------SSCEEEEEEEEEE
T ss_pred ---ccccCccEEehhheeeccccCCCcccEEEeCC----------CCEEEEEEEEEec
Confidence 36999999999998654 2223456899997 3699999999864
|
| >d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin III species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.39 E-value=5.2e-14 Score=135.42 Aligned_cols=86 Identities=29% Similarity=0.435 Sum_probs=74.9
Q ss_pred CcEEEEEEEEeecCC------CCCcEEEEEECC-----eEEeecCccCCCCCeEeeEEEEEEe--cCCCceEEEEEEecC
Q 001987 3 STRLYVYVLQGQDLL------AKDSYVKVQIGK-----HKSKSRILKNNSNPVWNEEFVFRVH--NIDDEELVVSVFQHN 69 (985)
Q Consensus 3 ~~~L~V~V~~Ar~L~------~~DPyv~v~l~~-----~~~kT~v~~~t~nP~wnE~f~f~v~--~~~~~~L~~~V~D~d 69 (985)
+++|.|+|++|+||+ .+||||+|++.+ .+++|+++++++||.|||+|.|.++ +.....|.|.|||++
T Consensus 19 ~~~L~V~V~~a~nL~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~~P~wne~f~F~v~~~~~~~~~l~v~v~d~~ 98 (145)
T d1dqva2 19 AGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAPESVENVGLSIAVVDYD 98 (145)
T ss_dssp TTEEEEEEEEEESCCCCSSSSCCCEEEEECCCTTCCTTSCEECCCCCSCSSCEEEECCCCCCCSGGGGSCCCCCEEEECC
T ss_pred CCEEEEEEEEEeCCCCcCCCCCcCceEEEEEccCCccceeecCEEEeCCCCceecceEEEEEehhhcCCCEEEEEEEecC
Confidence 578999999999998 679999999964 2478999999999999999999885 345678999999999
Q ss_pred CCCCCCCCCCCeeEEEEEeCcccc
Q 001987 70 DDSGLFGSSGELMGRVRVPVSSIA 93 (985)
Q Consensus 70 ~~~~~~~~~d~~lG~~~i~L~~l~ 93 (985)
. .+++++||++.|+|..+.
T Consensus 99 ---~--~~~~~~iG~~~i~l~~~~ 117 (145)
T d1dqva2 99 ---C--IGHNEVIGVCRVGPEAAD 117 (145)
T ss_dssp ---S--SSCCEEEEECCCSSCTTC
T ss_pred ---C--CCCCcEEEEEEECchHcC
Confidence 4 578999999999998764
|
| >d2zkmx2 b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Phospholipase C-beta-2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.34 E-value=2.2e-12 Score=119.53 Aligned_cols=107 Identities=16% Similarity=0.241 Sum_probs=78.2
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEEC------CEEEEeee--ccCCCCCeEeEE-EEEE-eecCCCCEEEEEEEec
Q 001987 537 VLTVALVEGVNLASSEMTGLSDPYVVFTCN------GKTRTSSV--QLQTCDPQWHDI-LEFD-AMEEPPSVLDVEVFDF 606 (985)
Q Consensus 537 ~L~V~v~~a~~L~~~d~~g~~DPyv~v~~~------~~~~kT~~--~~~tlnP~Wne~-f~f~-v~~~~~~~L~v~V~D~ 606 (985)
.|+|+|++|++|+.. +.||||++++. .++.+|++ ..+++||.|||+ |.|. +..+....|+|.|||+
T Consensus 2 tl~V~Visaq~L~~~----~~dPyV~V~l~g~~~D~~~~~~t~~~~~~n~~nP~wne~~~~~~~~~~~~l~~L~f~V~D~ 77 (122)
T d2zkmx2 2 TLSITVISGQFLSER----SVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPELASLRVAVMEE 77 (122)
T ss_dssp EEEEEEEEEESCCSS----CCCEEEEEEEECCTTSCCCCEECCCCSSSCCSSCBCCCCCEEEEEESSGGGCEEEEEEEET
T ss_pred EEEEEEEEeeCCCCC----CCCcEEEEEEECcCCCCCccEEEEEEEeCCeecceEcccEeEEEecCCCcccEEEEEEECC
Confidence 589999999999865 48999999983 24455554 477999999976 4443 3334455899999996
Q ss_pred CCCCCCCCccceEEEEeeccccCcccceEEEccccccCC-cceeEEEEEe
Q 001987 607 DGPFDQATSLGHAEINFLKHTSTELADMWVSLEGKLAQS-AQSKVHLRIF 655 (985)
Q Consensus 607 d~~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~-~~g~l~l~~~ 655 (985)
| |++||++.|||..+..|. .|++|.+..+.. ..+.|.+.+.
T Consensus 78 d-----~~~lG~~~ipl~~l~~Gy---R~vpL~~~~g~~l~~~~L~v~i~ 119 (122)
T d2zkmx2 78 G-----NKFLGHRIIPINALNSGY---HHLCLHSESNMPLTMPALFIFLE 119 (122)
T ss_dssp T-----TEEEEEEEEEGGGBCCEE---EEEEEECTTCCEEEEEEEEEEEE
T ss_pred C-----CCEEEEEEEEcccCcCCc---eEEEccCCCcCCCCCceEEEEEE
Confidence 5 589999999999987764 678888754442 3344555443
|
| >d2zkmx2 b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Phospholipase C-beta-2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.30 E-value=8.7e-12 Score=115.44 Aligned_cols=90 Identities=28% Similarity=0.527 Sum_probs=71.0
Q ss_pred EEEEEEEEeecCC--CCCcEEEEEEC------CeEEeecC--ccCCCCCeEeeE-EEEE-EecCCCceEEEEEEecCCCC
Q 001987 5 RLYVYVLQGQDLL--AKDSYVKVQIG------KHKSKSRI--LKNNSNPVWNEE-FVFR-VHNIDDEELVVSVFQHNDDS 72 (985)
Q Consensus 5 ~L~V~V~~Ar~L~--~~DPyv~v~l~------~~~~kT~v--~~~t~nP~wnE~-f~f~-v~~~~~~~L~~~V~D~d~~~ 72 (985)
+|.|+|++|++|+ ..||||+|++- ..+.+|++ ..|++||.|||+ |.|. +..+....|+|.|||+|
T Consensus 2 tl~V~Visaq~L~~~~~dPyV~V~l~g~~~D~~~~~~t~~~~~~n~~nP~wne~~~~~~~~~~~~l~~L~f~V~D~d--- 78 (122)
T d2zkmx2 2 TLSITVISGQFLSERSVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPELASLRVAVMEEG--- 78 (122)
T ss_dssp EEEEEEEEEESCCSSCCCEEEEEEEECCTTSCCCCEECCCCSSSCCSSCBCCCCCEEEEEESSGGGCEEEEEEEETT---
T ss_pred EEEEEEEEeeCCCCCCCCcEEEEEEECcCCCCCccEEEEEEEeCCeecceEcccEeEEEecCCCcccEEEEEEECCC---
Confidence 6999999999999 88999999993 23344444 467999999976 4443 43556678999999976
Q ss_pred CCCCCCCCeeEEEEEeCccccccCCCCCCCeEEEeec
Q 001987 73 GLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLET 109 (985)
Q Consensus 73 ~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~~ 109 (985)
++|||++.+||+.+.. +.+|.+|.+
T Consensus 79 ------~~~lG~~~ipl~~l~~------GyR~vpL~~ 103 (122)
T d2zkmx2 79 ------NKFLGHRIIPINALNS------GYHHLCLHS 103 (122)
T ss_dssp ------TEEEEEEEEEGGGBCC------EEEEEEEEC
T ss_pred ------CCEEEEEEEEcccCcC------CceEEEccC
Confidence 4799999999999875 457889983
|
| >d1em2a_ d.129.3.2 (A:) Lipid transport domain of Mln64 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: TBP-like superfamily: Bet v1-like family: STAR domain domain: Lipid transport domain of Mln64 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.38 E-value=1.3 Score=42.36 Aligned_cols=149 Identities=9% Similarity=-0.052 Sum_probs=82.6
Q ss_pred EeeeecCChHHHHh-ccCCCchhHHHHHHcCCcceEEcccc-cCCCCceeEEEEEEec-cccCCCceeeeeEEEEeeccC
Q 001987 817 YNAELPISVKALME-MFDGGKLEHQVMEKSGCHNYVTTPWD-LVKPGVCERHLSYRFN-RHVSIFGGEVTCTQQKSPLAS 893 (985)
Q Consensus 817 ~~~~~p~~~~~~~~-lf~~s~f~~~~~~~~~~~~~~~~~W~-~~~~~~~~R~~sy~~~-~~~~~~~~~~~~~q~~~~~~~ 893 (985)
+..+++++++++|. ++.+.. .+...|-.+..++ .+.-+.....+.|... .+..|.+.+-....+.....+
T Consensus 56 ~~~~i~~~~~~v~~~~~~d~e-------~~~~Wd~~~~~~~ile~~~~~~~i~~~~~~~~~~~~vs~RD~v~~~~~~~~~ 128 (214)
T d1em2a_ 56 LKTFLPCPAELVYQEVILQPE-------RMVLWNKTVTACQILQRVEDNTLISYDVSAGAAGGVVSPRDFVNVRRIERRR 128 (214)
T ss_dssp EEEEESSCHHHHHHHTTTCHH-------HHTTTCTTEEEEEEEEEETTTEEEEEEEECCBTTTTBCCEEEEEEEEEEECS
T ss_pred EEEEEeCCHHHHHHHHHhChH-------HHHHHHHHHhheEEEEEcCCCceEEEEEecccCCCCCCCcEEEEEEEEEEcC
Confidence 45688999999986 765432 2222222233333 1111222233333332 222334444433333333334
Q ss_pred CCcEEEEEEEeeCCCC-CCCeEEEE---EEEEEEecCCCCCccEEEEEEEEEEEeeeeehhhhhhchHHHHHHHHHHHHH
Q 001987 894 GEGWIVNEVMSLHDVP-FDDHFRVH---FRYEIEKSPLAHNACKCAIYIGISWLKSTKFQQRITQNITEKFTHRLKEMIE 969 (985)
Q Consensus 894 ~~~~vv~~~~~~~dVP-ygd~F~v~---~ry~i~~~~~~~~~~~l~v~~~v~~~k~t~~K~~Ie~~~~~g~~~~~~~~~~ 969 (985)
+..+++..++..+++| -.++-+++ ..|+|++.++++++|++.....+...++ +=+..+..-..+++-+.++.|-+
T Consensus 129 ~~~~~~~~s~~~~~~p~~~~~vR~~~~~~~~~i~p~~~~~~~t~vt~~~~~Dp~G~-iP~~lvn~~~~~~~~~~~~~Lrk 207 (214)
T d1em2a_ 129 DRYLSSGIATSHSAKPPTHKYVRGENGPGGMIVLKSASNPRVCTFVWILNTDLKGR-LPRYLIHQSLAATMFEFAFHLRQ 207 (214)
T ss_dssp SEEEEEEEECCCTTSCCCTTSEECEECSEEEEEEECSSCTTCEEEEEEECEECCSS-SCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcEEEEEEeeccccccCCCCeEEEEEEeeeEEEEECCCCCCeEEEEEEEEeCCCCC-CCHHHHHHHHHHhHHHHHHHHHH
Confidence 4445555555555554 45555655 7899999888778999999999998875 34556666665666665555555
Q ss_pred HHHH
Q 001987 970 LVER 973 (985)
Q Consensus 970 ~~~~ 973 (985)
.++|
T Consensus 208 ~~~k 211 (214)
T d1em2a_ 208 RISE 211 (214)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5544
|
| >d1jssa_ d.129.3.2 (A:) Cholesterol-regulated Start protein 4 (Stard4). {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: TBP-like superfamily: Bet v1-like family: STAR domain domain: Cholesterol-regulated Start protein 4 (Stard4). species: Mouse (Mus musculus) [TaxId: 10090]
Probab=84.69 E-value=2.8 Score=39.37 Aligned_cols=143 Identities=9% Similarity=-0.032 Sum_probs=80.4
Q ss_pred eeeecCChHHHHhccCCCchhHHHHHHcCCcceEEcccc-cCCCCceeEEEEEEeccccCCC-ceeeeeEEEEeeccCCC
Q 001987 818 NAELPISVKALMEMFDGGKLEHQVMEKSGCHNYVTTPWD-LVKPGVCERHLSYRFNRHVSIF-GGEVTCTQQKSPLASGE 895 (985)
Q Consensus 818 ~~~~p~~~~~~~~lf~~s~f~~~~~~~~~~~~~~~~~W~-~~~~~~~~R~~sy~~~~~~~~~-~~~~~~~q~~~~~~~~~ 895 (985)
..++|++++++++++.+.+........ +...+ .+..+...+.+.|.......|. +.+-... ..+....+.
T Consensus 49 ~~~i~~~~~~v~~~l~d~~~~~~Wd~~-------~~~~~~le~~~~~~~i~~~~~~~~~~~~v~~RD~v~-~~~~~~~~~ 120 (199)
T d1jssa_ 49 QGVMDDVVNNVIDHIRPGPWRLDWDRL-------MTSLDVLEHFEENCCVMRYTTAGQLLNIISPREFVD-FSYTVGYEE 120 (199)
T ss_dssp EEEESSCHHHHHHHHSSSTTHHHHCSS-------EEEEEEEEECSTTEEEEEEEECCBTTTTBCCEEEEE-EEEEEEETT
T ss_pred EEEeCCCHHHHHHHHhChhhhhhcccc-------hheEEEEEEcCCCcEEEEEEEcccCCCCcCCcEEEE-EEEEEEcCC
Confidence 557899999999976554444433222 12222 1122233444545443333333 2232222 112122333
Q ss_pred cEEEEEEEeeCCCCCCCeEE-E---EEEEEEEecCCCCCccEEEEEEEEEEEeeeeehhhhhhchHHHHHHHHHHHHHH
Q 001987 896 GWIVNEVMSLHDVPFDDHFR-V---HFRYEIEKSPLAHNACKCAIYIGISWLKSTKFQQRITQNITEKFTHRLKEMIEL 970 (985)
Q Consensus 896 ~~vv~~~~~~~dVPygd~F~-v---~~ry~i~~~~~~~~~~~l~v~~~v~~~k~t~~K~~Ie~~~~~g~~~~~~~~~~~ 970 (985)
+. +...+..++.|...-+- + ...|.|++.++++++|+|...+.+...++ .=+..|.+.+.+.+-+.++.|-+.
T Consensus 121 ~~-~~~~~~~~~~p~~~~~VR~~~~~~~~~i~p~~~~~~~t~vt~~~~~Dp~G~-iP~~lvn~~~~~~~~~~~~~Lr~~ 197 (199)
T d1jssa_ 121 GL-LSCGVSVEWSETRPEFVRGYNHPCGWFCVPLKDSPSQSLLTGYIQTDLRGM-IPQSAVDTAMASTLANFYSDLRKG 197 (199)
T ss_dssp EE-EEEEEECCCCCCCTTSEECEECSEEEEEEEETTEEEEEEEEEEECEECCSC-CCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cE-EEEEEecCCCCCCCceEEEEEeeeeEEEEEcCCCCCcEEEEEEEEcCCCCC-CcHHHHHHHHHHHHHHHHHHHHHh
Confidence 33 34456778888776553 3 36799999888667899888888887764 447777776666655555554443
|