Citrus Sinensis ID: 001989
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 985 | 2.2.26 [Sep-21-2011] | |||||||
| P49361 | 1037 | Glycine dehydrogenase [de | N/A | no | 0.949 | 0.901 | 0.854 | 0.0 | |
| P49362 | 1034 | Glycine dehydrogenase [de | N/A | no | 0.946 | 0.901 | 0.855 | 0.0 | |
| O49852 | 1034 | Glycine dehydrogenase [de | N/A | no | 0.946 | 0.901 | 0.853 | 0.0 | |
| O49850 | 1034 | Glycine dehydrogenase [de | N/A | no | 0.946 | 0.901 | 0.855 | 0.0 | |
| O49954 | 1035 | Glycine dehydrogenase [de | N/A | no | 0.948 | 0.902 | 0.837 | 0.0 | |
| Q94B78 | 1037 | Glycine dehydrogenase [de | yes | no | 0.951 | 0.903 | 0.833 | 0.0 | |
| O80988 | 1044 | Glycine dehydrogenase [de | no | no | 0.955 | 0.901 | 0.832 | 0.0 | |
| P26969 | 1057 | Glycine dehydrogenase [de | N/A | no | 0.961 | 0.895 | 0.830 | 0.0 | |
| Q3M9G1 | 974 | Glycine dehydrogenase [de | yes | no | 0.859 | 0.869 | 0.592 | 0.0 | |
| Q8YNF9 | 983 | Glycine dehydrogenase [de | yes | no | 0.861 | 0.863 | 0.587 | 0.0 |
| >sp|P49361|GCSPA_FLAPR Glycine dehydrogenase [decarboxylating] A, mitochondrial OS=Flaveria pringlei GN=GDCSPA PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 1665 bits (4311), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 818/957 (85%), Positives = 874/957 (91%), Gaps = 22/957 (2%)
Query: 1 MERARRLASRAFLKRLVNESKQLSRNHRESKSSAAAAATYTPSRYLSSLSCAPFVCS-NN 59
MERARRLA++A L RLV+++K H S SS A +PSRY+SSLS P+VCS N
Sbjct: 1 MERARRLANKAILGRLVSQTK-----HNPSISSPALC---SPSRYVSSLS--PYVCSGTN 50
Query: 60 SRSDLLQSRNMSHHNVNGYGLGSQTRGISVEALKPSDTFARRHNSATPEDQAKMSELVGL 119
RSD N+NG+G SQ R ISVEALKPSDTF RRHNSATPE+Q KM+E VG
Sbjct: 51 VRSD---------RNLNGFG--SQVRTISVEALKPSDTFPRRHNSATPEEQTKMAEFVGF 99
Query: 120 DNLDSLIDATVPKSIRIDSMKFSKFDEGLTESQMIEHMQKLASMNKVYKSFIGMGYYNTH 179
NLDSLIDATVPKSIR+DSMK+SKFDEGLTESQMI HMQ LAS NK++KSFIGMGYYNT
Sbjct: 100 PNLDSLIDATVPKSIRLDSMKYSKFDEGLTESQMIAHMQDLASKNKIFKSFIGMGYYNTS 159
Query: 180 VPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTA 239
VP VILRNIMENP WYTQYTPYQAEIAQGRLESLLNFQTM+ DLTGLPMSNASLLDEGTA
Sbjct: 160 VPTVILRNIMENPGWYTQYTPYQAEIAQGRLESLLNFQTMVTDLTGLPMSNASLLDEGTA 219
Query: 240 AAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDLKDIDYKSGDVC 299
AAEAMAMCNNIQKGKKKTFIIASNCHPQTIDIC TRADGFD+KVV SDLKD DY SGDVC
Sbjct: 220 AAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICKTRADGFDLKVVTSDLKDFDYSSGDVC 279
Query: 300 GVLVQYPGTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKPPGELGADIVVGSAQRF 359
GVLVQYPGTEGE+LDY +FIKNAHANGVKVVMA+DLLALTILKPPGELGADIVVGSAQRF
Sbjct: 280 GVLVQYPGTEGELLDYSEFIKNAHANGVKVVMASDLLALTILKPPGELGADIVVGSAQRF 339
Query: 360 GVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSN 419
GVPMGYGGPHAAFLATSQEYKRMMPGRI+GVS+DSSGKPALR+AMQTREQHIRRDKATSN
Sbjct: 340 GVPMGYGGPHAAFLATSQEYKRMMPGRIIGVSVDSSGKPALRMAMQTREQHIRRDKATSN 399
Query: 420 ICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDTVK 479
ICTAQALLANMAAM+ VYHGPEGLKTIA+RVHGLAGTFA GLKKLGTV+VQ LPFFDTVK
Sbjct: 400 ICTAQALLANMAAMFGVYHGPEGLKTIAKRVHGLAGTFAAGLKKLGTVQVQDLPFFDTVK 459
Query: 480 VKCADAHAIASAAYKIEMNLRVVDSNTVTASFDETTTLEDVDKLFIVFAGGKSVPFTAAS 539
V C D+ AIA AYK +MNLR+VD NT+T +FDETTT+EDVD LF VFA GK V FTAAS
Sbjct: 460 VTCVDSKAIAEEAYKHKMNLRIVDKNTITVAFDETTTIEDVDTLFKVFALGKPVTFTAAS 519
Query: 540 LAEEVETAIPSGLTRESPYLTHPVFNKYHTEHELLRYIHLLQSKELSLCHSMIPLGSCTM 599
+A EV+ AIPSGL RE+PYLTHP+FN YHTEHELLRYI LQSK+LSLCHSMIPLGSCTM
Sbjct: 520 IAPEVQDAIPSGLVRETPYLTHPIFNMYHTEHELLRYISKLQSKDLSLCHSMIPLGSCTM 579
Query: 600 KLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFDSFSLQPNAGAA 659
KLNATTEMMPVTWP+FA+IHPFAP +QAQGYQEMF NLG+ LCTITGFDSFSLQPNAGAA
Sbjct: 580 KLNATTEMMPVTWPAFADIHPFAPTEQAQGYQEMFKNLGDLLCTITGFDSFSLQPNAGAA 639
Query: 660 GEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKGNINIEE 719
GEYAGLMVIRAYH ARGDHHRNVCIIPVSAHGTNPA+AAMCGMKI++VGTD+KGNINIEE
Sbjct: 640 GEYAGLMVIRAYHMARGDHHRNVCIIPVSAHGTNPASAAMCGMKIITVGTDSKGNINIEE 699
Query: 720 LRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSP 779
LRKAAEAN++NLS LMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSP
Sbjct: 700 LRKAAEANKENLSALMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSP 759
Query: 780 GYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPL 839
G+IGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAP+LPSHPVV+TGGIPAPE+SQPL
Sbjct: 760 GWIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPYLPSHPVVATGGIPAPEQSQPL 819
Query: 840 GTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNG 899
GTIAAAPWGSALILPISYTYIAMMGS+G+T ASKIAILNANYMAKRLE HYPILFRGVNG
Sbjct: 820 GTIAAAPWGSALILPISYTYIAMMGSQGITNASKIAILNANYMAKRLENHYPILFRGVNG 879
Query: 900 TVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKS 956
TVAHEFIVDLR LK TAGIEPEDVAKRL+DYGFHGPTMSWPVPGTLMIEPTESESK+
Sbjct: 880 TVAHEFIVDLRPLKTTAGIEPEDVAKRLIDYGFHGPTMSWPVPGTLMIEPTESESKA 936
|
The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein. Flaveria pringlei (taxid: 4226) EC: 1EC: .EC: 4EC: .EC: 4EC: .EC: 2 |
| >sp|P49362|GCSPB_FLAPR Glycine dehydrogenase [decarboxylating] B, mitochondrial OS=Flaveria pringlei GN=GDCSPB PE=3 SV=1 | Back alignment and function description |
|---|
Score = 1657 bits (4291), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 819/957 (85%), Positives = 871/957 (91%), Gaps = 25/957 (2%)
Query: 1 MERARRLASRAFLKRLVNESKQLSRNHRESKSSAAAAATYTPSRYLSSLSCAPFVCS-NN 59
MERARRLA L RLV+++K H S SS A +PSRY+SSLS P+VCS N
Sbjct: 1 MERARRLA---ILGRLVSQTK-----HNPSISSPALC---SPSRYVSSLS--PYVCSGTN 47
Query: 60 SRSDLLQSRNMSHHNVNGYGLGSQTRGISVEALKPSDTFARRHNSATPEDQAKMSELVGL 119
RSD N+NG+G SQ R ISVEALKPSDTF RRHNSATPE+Q KM+E VG
Sbjct: 48 VRSD---------RNLNGFG--SQVRTISVEALKPSDTFPRRHNSATPEEQTKMAEFVGF 96
Query: 120 DNLDSLIDATVPKSIRIDSMKFSKFDEGLTESQMIEHMQKLASMNKVYKSFIGMGYYNTH 179
NLDSLIDATVPKSIR+DSMK+SKFDEGLTESQMI HMQ LAS NK++KSFIGMGYYNT
Sbjct: 97 PNLDSLIDATVPKSIRLDSMKYSKFDEGLTESQMIAHMQDLASKNKIFKSFIGMGYYNTS 156
Query: 180 VPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTA 239
VP VILRNIMENP WYTQYTPYQAEIAQGRLESLLNFQTMI DLTGLPMSNASLLDEGTA
Sbjct: 157 VPTVILRNIMENPGWYTQYTPYQAEIAQGRLESLLNFQTMITDLTGLPMSNASLLDEGTA 216
Query: 240 AAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDLKDIDYKSGDVC 299
AAEAMAMCNNIQKGKKKTFIIASNCHPQTIDIC TRADGFD+KVV SDLKD DY SGDVC
Sbjct: 217 AAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICKTRADGFDLKVVTSDLKDFDYSSGDVC 276
Query: 300 GVLVQYPGTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKPPGELGADIVVGSAQRF 359
GVLVQYPGTEGE+LDY +FIKNAHANGVKVVMA+DLLALTILKPPGELGADIVVGSAQRF
Sbjct: 277 GVLVQYPGTEGELLDYSEFIKNAHANGVKVVMASDLLALTILKPPGELGADIVVGSAQRF 336
Query: 360 GVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSN 419
GVPMGYGGPHAAFLATSQEYKRMMPGRI+GVS+DSSGKPALR+AMQTREQHIRRDKATSN
Sbjct: 337 GVPMGYGGPHAAFLATSQEYKRMMPGRIIGVSVDSSGKPALRMAMQTREQHIRRDKATSN 396
Query: 420 ICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDTVK 479
ICTAQALLANMAAM+ VYHGPEGLKTIA+RVHGLAGTFA GLKKLGTV+VQ LPFFDTVK
Sbjct: 397 ICTAQALLANMAAMFGVYHGPEGLKTIAKRVHGLAGTFASGLKKLGTVQVQDLPFFDTVK 456
Query: 480 VKCADAHAIASAAYKIEMNLRVVDSNTVTASFDETTTLEDVDKLFIVFAGGKSVPFTAAS 539
V CAD+ AIA AYK +MNLR+VD NT+T +FDETTT+EDVD LF VFA GK V FTAAS
Sbjct: 457 VTCADSKAIAEEAYKHKMNLRIVDKNTITVAFDETTTIEDVDTLFKVFALGKPVTFTAAS 516
Query: 540 LAEEVETAIPSGLTRESPYLTHPVFNKYHTEHELLRYIHLLQSKELSLCHSMIPLGSCTM 599
+A EV+ AIPSGL RE+PYLTHP+FN YHTEHELLRYI LQSK+LSLCHSMIPLGSCTM
Sbjct: 517 IAPEVQDAIPSGLVRETPYLTHPIFNMYHTEHELLRYISKLQSKDLSLCHSMIPLGSCTM 576
Query: 600 KLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFDSFSLQPNAGAA 659
KLNATTEMMPVTWP+FA+IHPFAP +QAQGYQEMF NLG+ LCTITGFDSFSLQPNAGAA
Sbjct: 577 KLNATTEMMPVTWPAFADIHPFAPTEQAQGYQEMFKNLGDLLCTITGFDSFSLQPNAGAA 636
Query: 660 GEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKGNINIEE 719
GEYAGLMVIRAYH ARGDHHRNVCIIPVSAHGTNPA+AAMCGMKI++VGTD+KGNINIEE
Sbjct: 637 GEYAGLMVIRAYHMARGDHHRNVCIIPVSAHGTNPASAAMCGMKIITVGTDSKGNINIEE 696
Query: 720 LRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSP 779
LRKAAEAN++NLS LMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSP
Sbjct: 697 LRKAAEANKENLSALMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSP 756
Query: 780 GYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPL 839
G+IGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAP+LPSHPVV TGGIPAPE+SQPL
Sbjct: 757 GWIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPYLPSHPVVPTGGIPAPEQSQPL 816
Query: 840 GTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNG 899
GTIAAAPWGSALILPISYTYIAMMGS+G+T ASKIAILNANYMAKRLE HYPILFRGVNG
Sbjct: 817 GTIAAAPWGSALILPISYTYIAMMGSQGITNASKIAILNANYMAKRLENHYPILFRGVNG 876
Query: 900 TVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKS 956
TVAHEFIVDLR LK TAGIEPEDVAKRL+DYGFHGPTMSWPVPGTLMIEPTESESK+
Sbjct: 877 TVAHEFIVDLRPLKTTAGIEPEDVAKRLIDYGFHGPTMSWPVPGTLMIEPTESESKA 933
|
The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein. Flaveria pringlei (taxid: 4226) EC: 1 EC: . EC: 4 EC: . EC: 4 EC: . EC: 2 |
| >sp|O49852|GCSP_FLATR Glycine dehydrogenase [decarboxylating], mitochondrial OS=Flaveria trinervia GN=GDCSPA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 1657 bits (4290), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 817/957 (85%), Positives = 871/957 (91%), Gaps = 25/957 (2%)
Query: 1 MERARRLASRAFLKRLVNESKQLSRNHRESKSSAAAAATYTPSRYLSSLSCAPFVCS-NN 59
MERARRLA L RLV+++K H S SS+A +PSRY+SSLS P+VCS N
Sbjct: 1 MERARRLA---MLGRLVSQTK-----HNPSISSSALC---SPSRYVSSLS--PYVCSGTN 47
Query: 60 SRSDLLQSRNMSHHNVNGYGLGSQTRGISVEALKPSDTFARRHNSATPEDQAKMSELVGL 119
RSD N+NG+G SQ R ISVEALKPSDTF RRHNSATPE+Q KM+E VG
Sbjct: 48 VRSD---------RNLNGFG--SQVRTISVEALKPSDTFPRRHNSATPEEQTKMAEFVGF 96
Query: 120 DNLDSLIDATVPKSIRIDSMKFSKFDEGLTESQMIEHMQKLASMNKVYKSFIGMGYYNTH 179
NLDSLIDATVPK+IR+DSMK+SKFDEGLTESQMI HMQ LAS NK++KSFIGMGYYNT
Sbjct: 97 SNLDSLIDATVPKAIRLDSMKYSKFDEGLTESQMIAHMQDLASKNKIFKSFIGMGYYNTS 156
Query: 180 VPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTA 239
VP VILRNIMENP WYTQYTPYQAEIAQGRLESLLNFQTMI DLTGLPMSNASLLDEGTA
Sbjct: 157 VPTVILRNIMENPGWYTQYTPYQAEIAQGRLESLLNFQTMITDLTGLPMSNASLLDEGTA 216
Query: 240 AAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDLKDIDYKSGDVC 299
AAEAMAMCNNIQKGKKKTFIIASNCHPQTIDIC TRADGFD+KVV SDLKD DY SGDVC
Sbjct: 217 AAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICKTRADGFDLKVVTSDLKDFDYSSGDVC 276
Query: 300 GVLVQYPGTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKPPGELGADIVVGSAQRF 359
GVLVQYPGTEGE+LDY +FIKNAHANGVKVVMA+DLLALTILKPPGELGADIVVGSAQRF
Sbjct: 277 GVLVQYPGTEGELLDYSEFIKNAHANGVKVVMASDLLALTILKPPGELGADIVVGSAQRF 336
Query: 360 GVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSN 419
GVPMGYGGPHAAFLATSQEYKRMMPGRI+GVS+DSSGKPALR+AMQTREQHIRRDKATSN
Sbjct: 337 GVPMGYGGPHAAFLATSQEYKRMMPGRIIGVSVDSSGKPALRMAMQTREQHIRRDKATSN 396
Query: 420 ICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDTVK 479
ICTAQALLANMAAMY VYHGPEGLKTIA+RVHGLAGTFA GLKKLGTV+VQ LPFFDTVK
Sbjct: 397 ICTAQALLANMAAMYGVYHGPEGLKTIAKRVHGLAGTFAAGLKKLGTVQVQDLPFFDTVK 456
Query: 480 VKCADAHAIASAAYKIEMNLRVVDSNTVTASFDETTTLEDVDKLFIVFAGGKSVPFTAAS 539
V CAD+ AIA AYK +MNLR+VD NT+T +FDETTT+EDVD LF VFA GK V FTAAS
Sbjct: 457 VTCADSKAIAEEAYKHKMNLRIVDKNTITVAFDETTTIEDVDTLFKVFALGKPVTFTAAS 516
Query: 540 LAEEVETAIPSGLTRESPYLTHPVFNKYHTEHELLRYIHLLQSKELSLCHSMIPLGSCTM 599
+A EV+ AIPSGL RE+PYLTHP+FN YHTEHELLRYI LQSK+LSLCHSMIPLGSCTM
Sbjct: 517 IAPEVQDAIPSGLVRETPYLTHPIFNMYHTEHELLRYISKLQSKDLSLCHSMIPLGSCTM 576
Query: 600 KLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFDSFSLQPNAGAA 659
KLNATTEMMPVTWP+FA+IHPFAP +QAQGYQEMF NLG+ LCTITGFDSFSLQPNAGAA
Sbjct: 577 KLNATTEMMPVTWPAFADIHPFAPTEQAQGYQEMFKNLGDLLCTITGFDSFSLQPNAGAA 636
Query: 660 GEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKGNINIEE 719
GEYAGLMVI+AYH ARGDHHR VCIIPVSAHGTNPA+AAMCGMKI++VGTD+KGNINIEE
Sbjct: 637 GEYAGLMVIQAYHMARGDHHRKVCIIPVSAHGTNPASAAMCGMKIITVGTDSKGNINIEE 696
Query: 720 LRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSP 779
LRKAAEAN++NLS LMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSP
Sbjct: 697 LRKAAEANKENLSALMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSP 756
Query: 780 GYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPL 839
G+IGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAP+LPSHPVV TGGIPAPE+SQPL
Sbjct: 757 GWIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPYLPSHPVVPTGGIPAPEQSQPL 816
Query: 840 GTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNG 899
GTIAAAPWGSALILPISYTYIAMMGS+G+T ASKIAILNANYMAKRLE HYPILFRGVNG
Sbjct: 817 GTIAAAPWGSALILPISYTYIAMMGSQGITNASKIAILNANYMAKRLENHYPILFRGVNG 876
Query: 900 TVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKS 956
TVAHEFIVDLR LK TAGIEPEDVAKRL+DYGFHGPTMSWPVPGTLMIEPTESESK+
Sbjct: 877 TVAHEFIVDLRPLKTTAGIEPEDVAKRLIDYGFHGPTMSWPVPGTLMIEPTESESKA 933
|
The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein. Flaveria trinervia (taxid: 4227) EC: 1 EC: . EC: 4 EC: . EC: 4 EC: . EC: 2 |
| >sp|O49850|GCSP_FLAAN Glycine dehydrogenase [decarboxylating], mitochondrial OS=Flaveria anomala GN=GDCSP PE=3 SV=1 | Back alignment and function description |
|---|
Score = 1655 bits (4286), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 819/957 (85%), Positives = 870/957 (90%), Gaps = 25/957 (2%)
Query: 1 MERARRLASRAFLKRLVNESKQLSRNHRESKSSAAAAATYTPSRYLSSLSCAPFVCS-NN 59
MERARRLA L RLV+++K H S SS A +PSRY+SSLS P+VC N
Sbjct: 1 MERARRLA---MLGRLVSQTK-----HNPSISSPALC---SPSRYVSSLS--PYVCGGTN 47
Query: 60 SRSDLLQSRNMSHHNVNGYGLGSQTRGISVEALKPSDTFARRHNSATPEDQAKMSELVGL 119
RSD N+NG+G SQ R ISVEALKPSDTF RRHNSATPE+Q KM+E VG
Sbjct: 48 VRSD---------RNLNGFG--SQVRTISVEALKPSDTFPRRHNSATPEEQTKMAEFVGF 96
Query: 120 DNLDSLIDATVPKSIRIDSMKFSKFDEGLTESQMIEHMQKLASMNKVYKSFIGMGYYNTH 179
NLDSLIDATVPKSIR+DSMK+SKFDEGLTESQMI HMQ LAS NK++KSFIGMGYYNT
Sbjct: 97 SNLDSLIDATVPKSIRLDSMKYSKFDEGLTESQMIAHMQDLASKNKIFKSFIGMGYYNTS 156
Query: 180 VPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTA 239
VP VILRNIMENP WYTQYTPYQAEIAQGRLESLLNFQTMI DLTGLPMSNASLLDEGTA
Sbjct: 157 VPTVILRNIMENPGWYTQYTPYQAEIAQGRLESLLNFQTMITDLTGLPMSNASLLDEGTA 216
Query: 240 AAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDLKDIDYKSGDVC 299
AAEAMAMCNNIQKGKKKTFIIASNCHPQTIDIC TRADGFD+KVV SDLKD DY SGDVC
Sbjct: 217 AAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICKTRADGFDLKVVTSDLKDFDYSSGDVC 276
Query: 300 GVLVQYPGTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKPPGELGADIVVGSAQRF 359
GVLVQYPGTEGE+LDY +FIKNAHANGVKVVMA+DLLALTILKPPGELGADIVVGSAQRF
Sbjct: 277 GVLVQYPGTEGELLDYSEFIKNAHANGVKVVMASDLLALTILKPPGELGADIVVGSAQRF 336
Query: 360 GVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSN 419
GVPMGYGGPHAAFLATSQEYKRMMPGRI+GVS+DSSGKPALR+AMQTREQHIRRDKATSN
Sbjct: 337 GVPMGYGGPHAAFLATSQEYKRMMPGRIIGVSVDSSGKPALRMAMQTREQHIRRDKATSN 396
Query: 420 ICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDTVK 479
ICTAQALLANMAAMY VYHGPEGLKTIA+RVHGLAGTFA GLKKLGTV+VQ LPFFDTVK
Sbjct: 397 ICTAQALLANMAAMYGVYHGPEGLKTIAKRVHGLAGTFAAGLKKLGTVQVQDLPFFDTVK 456
Query: 480 VKCADAHAIASAAYKIEMNLRVVDSNTVTASFDETTTLEDVDKLFIVFAGGKSVPFTAAS 539
V CAD+ AIA A K +MNLR+VD NT+T +FDETTT+EDVD LF VFA GK VPFTAAS
Sbjct: 457 VTCADSKAIAEEACKHKMNLRIVDKNTITVAFDETTTIEDVDTLFKVFALGKPVPFTAAS 516
Query: 540 LAEEVETAIPSGLTRESPYLTHPVFNKYHTEHELLRYIHLLQSKELSLCHSMIPLGSCTM 599
+A EV+ AIPSGL RE+PYLTHP+FN YHTEHELLRYI LQSK+LSLCHSMIPLGSCTM
Sbjct: 517 IAPEVQDAIPSGLVRETPYLTHPIFNMYHTEHELLRYISKLQSKDLSLCHSMIPLGSCTM 576
Query: 600 KLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFDSFSLQPNAGAA 659
KLNATTEMMPVTWP+FA+IHPFAP +QAQGYQEMF NLG+ LCTITGFDSFSLQPNAGAA
Sbjct: 577 KLNATTEMMPVTWPAFADIHPFAPTEQAQGYQEMFKNLGDLLCTITGFDSFSLQPNAGAA 636
Query: 660 GEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKGNINIEE 719
GEYAGLMVIRAYH ARGDHHRNVCIIPVSAHGTNPA+AAMCGMKI++VGTD+KGNINIEE
Sbjct: 637 GEYAGLMVIRAYHMARGDHHRNVCIIPVSAHGTNPASAAMCGMKIITVGTDSKGNINIEE 696
Query: 720 LRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSP 779
LRKAAEAN++NLS LMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSP
Sbjct: 697 LRKAAEANKENLSALMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSP 756
Query: 780 GYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPL 839
G+IGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAP+LPSHPVV TGGIPAPE+SQPL
Sbjct: 757 GWIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPYLPSHPVVPTGGIPAPEESQPL 816
Query: 840 GTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNG 899
GTIAAAPWGSALILPISYTYIAMMGS+G+T ASKIAILNANYMAKRLE HYPILFRGVNG
Sbjct: 817 GTIAAAPWGSALILPISYTYIAMMGSQGITNASKIAILNANYMAKRLENHYPILFRGVNG 876
Query: 900 TVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKS 956
TVAHEFIVDLR LK TAGIEPEDVAKRL+DYGFHGPTMSWPVPGTLMIEPTESESK+
Sbjct: 877 TVAHEFIVDLRPLKTTAGIEPEDVAKRLIDYGFHGPTMSWPVPGTLMIEPTESESKA 933
|
The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein. Flaveria anomala (taxid: 35877) EC: 1 EC: . EC: 4 EC: . EC: 4 EC: . EC: 2 |
| >sp|O49954|GCSP_SOLTU Glycine dehydrogenase [decarboxylating], mitochondrial OS=Solanum tuberosum GN=GDCSP PE=2 SV=1 | Back alignment and function description |
|---|
Score = 1649 bits (4270), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 801/956 (83%), Positives = 867/956 (90%), Gaps = 22/956 (2%)
Query: 1 MERARRLASRAFLKRLVNESKQLSRNHRESKSSAAAAATYTPSRYLSSLSCAPFVCSNNS 60
MERAR+LA+RA LKRLV++SKQ N S S Y PSRY+SSLS F NN+
Sbjct: 1 MERARKLANRAILKRLVSQSKQSRSNEIPSSS------LYRPSRYVSSLSPYTFQARNNA 54
Query: 61 RSDLLQSRNMSHHNVNGYGLGSQTRGISVEALKPSDTFARRHNSATPEDQAKMSELVGLD 120
+S Q Q R ISVEALKPSDTF RRHNSATPE+Q KM+E G
Sbjct: 55 KSFNTQ----------------QARSISVEALKPSDTFPRRHNSATPEEQTKMAEFCGFQ 98
Query: 121 NLDSLIDATVPKSIRIDSMKFSKFDEGLTESQMIEHMQKLASMNKVYKSFIGMGYYNTHV 180
+LD+LIDATVP+SIR +SMK KFD GLTESQMIEHMQ LAS NKV+KS+IGMGYYNT+V
Sbjct: 99 SLDALIDATVPQSIRSESMKLPKFDSGLTESQMIEHMQNLASKNKVFKSYIGMGYYNTYV 158
Query: 181 PPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAA 240
PPVILRN++ENPAWYTQYTPYQAEI+QGRLESLLN+QTMI DLTGLPMSNASLLDEGTAA
Sbjct: 159 PPVILRNLLENPAWYTQYTPYQAEISQGRLESLLNYQTMITDLTGLPMSNASLLDEGTAA 218
Query: 241 AEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDLKDIDYKSGDVCG 300
AEAMAMCNNI KGKKKTF+IASNCHPQTIDIC TRADGFD+KVV DLKDIDYKSGDVCG
Sbjct: 219 AEAMAMCNNILKGKKKTFLIASNCHPQTIDICKTRADGFDLKVVTVDLKDIDYKSGDVCG 278
Query: 301 VLVQYPGTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKPPGELGADIVVGSAQRFG 360
VLVQYPGTEGE+LDYG+FIKNAHA+GVKVVMA+DLLALT+LKPPGELGADIVVGSAQRFG
Sbjct: 279 VLVQYPGTEGEILDYGEFIKNAHAHGVKVVMASDLLALTMLKPPGELGADIVVGSAQRFG 338
Query: 361 VPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNI 420
VPMGYGGPHAAFLATSQEYKRMMPGRI+G+S+DS+GKPALR+AMQTREQHIRRDKATSNI
Sbjct: 339 VPMGYGGPHAAFLATSQEYKRMMPGRIIGLSVDSTGKPALRMAMQTREQHIRRDKATSNI 398
Query: 421 CTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDTVKV 480
CTAQALLANMAAMYAVYHGPEGLKTI QRVHGLAGTF+ GLKKLGTVEVQ LPFFDTVKV
Sbjct: 399 CTAQALLANMAAMYAVYHGPEGLKTIGQRVHGLAGTFSAGLKKLGTVEVQDLPFFDTVKV 458
Query: 481 KCADAHAIASAAYKIEMNLRVVDSNTVTASFDETTTLEDVDKLFIVFAGGKSVPFTAASL 540
KC+DA AIA A K ++NLR+VD+NT+T SFDETTTLEDVD LF VFA GK VPFTA S+
Sbjct: 459 KCSDAKAIADVANKNDINLRIVDNNTITVSFDETTTLEDVDDLFKVFALGKPVPFTAQSI 518
Query: 541 AEEVETAIPSGLTRESPYLTHPVFNKYHTEHELLRYIHLLQSKELSLCHSMIPLGSCTMK 600
A+EVE IPSGLTRE+P+LTH +FN YHTEHELLRY+H LQSK+LSLCHSMIPLGSCTMK
Sbjct: 519 AQEVENLIPSGLTRETPFLTHQIFNSYHTEHELLRYLHKLQSKDLSLCHSMIPLGSCTMK 578
Query: 601 LNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFDSFSLQPNAGAAG 660
LNATTEMMPVTWPSFANIHPFAP +QA GYQEMF++LG LCTITGFDSFSLQPNAGAAG
Sbjct: 579 LNATTEMMPVTWPSFANIHPFAPTEQAAGYQEMFDDLGALLCTITGFDSFSLQPNAGAAG 638
Query: 661 EYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKGNINIEEL 720
EYAGLMVIRAYH +RGDHHRNVCIIPVSAHGTNPA+AAMCGMKIV+VGTDAKGNINIEEL
Sbjct: 639 EYAGLMVIRAYHMSRGDHHRNVCIIPVSAHGTNPASAAMCGMKIVAVGTDAKGNINIEEL 698
Query: 721 RKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPG 780
RKAAEAN+DNL+ LMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPG
Sbjct: 699 RKAAEANKDNLAALMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPG 758
Query: 781 YIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLG 840
+IGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAP+LPSHPVV TGGIP+P+KS+PLG
Sbjct: 759 FIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPYLPSHPVVPTGGIPSPDKSEPLG 818
Query: 841 TIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGT 900
I+AAPWGSALILPISYTYIAMMGSKGLT+ASKIAIL+ANYMAKRLEKHYP+LFRGVNGT
Sbjct: 819 AISAAPWGSALILPISYTYIAMMGSKGLTDASKIAILSANYMAKRLEKHYPVLFRGVNGT 878
Query: 901 VAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKS 956
AHEFI+DLRG KNTAGIEPEDVAKRL+DYGFHGPTMSWPVPGTLMIEPTESESK+
Sbjct: 879 CAHEFIIDLRGFKNTAGIEPEDVAKRLIDYGFHGPTMSWPVPGTLMIEPTESESKA 934
|
The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein. Solanum tuberosum (taxid: 4113) EC: 1 EC: . EC: 4 EC: . EC: 4 EC: . EC: 2 |
| >sp|Q94B78|GCSP2_ARATH Glycine dehydrogenase [decarboxylating] 2, mitochondrial OS=Arabidopsis thaliana GN=At4g33010 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 1643 bits (4255), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 797/956 (83%), Positives = 866/956 (90%), Gaps = 19/956 (1%)
Query: 1 MERARRLASRAFLKRLVNESKQLSRNHRESKSSAAAAATYTPSRYLSSLSCAPFVCSNNS 60
MERARRLA R +KRLVN++K+ HR +++ + P+RY+SSLS PF+ +
Sbjct: 1 MERARRLAYRGIVKRLVNDTKR----HRNAETPHLVP--HAPARYVSSLS--PFIST--- 49
Query: 61 RSDLLQSRNMSHHNVNGYGLGSQTRGISVEALKPSDTFARRHNSATPEDQAKMSELVGLD 120
R+++H +G QTR ISV+A+KPSDTF RRHNSATP++Q M++ G D
Sbjct: 50 ------PRSVNH--TAAFGRHQQTRSISVDAVKPSDTFPRRHNSATPDEQTHMAKFCGFD 101
Query: 121 NLDSLIDATVPKSIRIDSMKFSKFDEGLTESQMIEHMQKLASMNKVYKSFIGMGYYNTHV 180
++DSLIDATVPKSIR+DSMKFSKFD GLTESQMI+HM LAS NKV+KSFIGMGYYNTHV
Sbjct: 102 HIDSLIDATVPKSIRLDSMKFSKFDAGLTESQMIQHMVDLASKNKVFKSFIGMGYYNTHV 161
Query: 181 PPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAA 240
P VILRNIMENPAWYTQYTPYQAEI+QGRLESLLNFQT+I DLTGLPMSNASLLDEGTAA
Sbjct: 162 PTVILRNIMENPAWYTQYTPYQAEISQGRLESLLNFQTVITDLTGLPMSNASLLDEGTAA 221
Query: 241 AEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDLKDIDYKSGDVCG 300
AEAMAMCNNI KGKKKTF+IASNCHPQTID+C TRADGFD+KVV SDLKDIDY SGDVCG
Sbjct: 222 AEAMAMCNNILKGKKKTFVIASNCHPQTIDVCKTRADGFDLKVVTSDLKDIDYSSGDVCG 281
Query: 301 VLVQYPGTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKPPGELGADIVVGSAQRFG 360
VLVQYPGTEGEVLDY +F+KNAHANGVKVVMATDLLALT+LKPPGE GADIVVGSAQRFG
Sbjct: 282 VLVQYPGTEGEVLDYAEFVKNAHANGVKVVMATDLLALTVLKPPGEFGADIVVGSAQRFG 341
Query: 361 VPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNI 420
VPMGYGGPHAAFLATSQEYKRMMPGRI+G+S+DSSGK ALR+AMQTREQHIRRDKATSNI
Sbjct: 342 VPMGYGGPHAAFLATSQEYKRMMPGRIIGISVDSSGKQALRMAMQTREQHIRRDKATSNI 401
Query: 421 CTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDTVKV 480
CTAQALLANMAAMYAVYHGP GLK+IAQRVHGLAG F+LGL KLG EVQ LPFFDTVK+
Sbjct: 402 CTAQALLANMAAMYAVYHGPAGLKSIAQRVHGLAGIFSLGLNKLGVAEVQELPFFDTVKI 461
Query: 481 KCADAHAIASAAYKIEMNLRVVDSNTVTASFDETTTLEDVDKLFIVFAGGKSVPFTAASL 540
KC+DAHAIA AA K E+NLRVVDS T+TASFDETTTL+DVDKLF VFA GK VPFTA SL
Sbjct: 462 KCSDAHAIADAASKSEINLRVVDSTTITASFDETTTLDDVDKLFKVFASGKPVPFTAESL 521
Query: 541 AEEVETAIPSGLTRESPYLTHPVFNKYHTEHELLRYIHLLQSKELSLCHSMIPLGSCTMK 600
A EV+ +IPS LTRESPYLTHP+FN YHTEHELLRYIH LQSK+LSLCHSMIPLGSCTMK
Sbjct: 522 APEVQNSIPSSLTRESPYLTHPIFNMYHTEHELLRYIHKLQSKDLSLCHSMIPLGSCTMK 581
Query: 601 LNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFDSFSLQPNAGAAG 660
LNATTEMMPVTWPSF +IHPFAP +QAQGYQEMF NLG+ LCTITGFDSFSLQPNAGAAG
Sbjct: 582 LNATTEMMPVTWPSFTDIHPFAPVEQAQGYQEMFENLGDLLCTITGFDSFSLQPNAGAAG 641
Query: 661 EYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKGNINIEEL 720
EYAGLMVIRAYH +RGDHHRNVCIIPVSAHGTNPA+AAMCGMKI++VGTDAKGNINIEE+
Sbjct: 642 EYAGLMVIRAYHMSRGDHHRNVCIIPVSAHGTNPASAAMCGMKIITVGTDAKGNINIEEV 701
Query: 721 RKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPG 780
RKAAEAN+DNL+ LMVTYPSTHGVYEEGIDEIC IIH+NGGQVYMDGANMNAQVGLTSPG
Sbjct: 702 RKAAEANKDNLAALMVTYPSTHGVYEEGIDEICNIIHENGGQVYMDGANMNAQVGLTSPG 761
Query: 781 YIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLG 840
+IGADVCHLNLHKTFCIPHGGGGPGMGPIGVK HLAPFLPSHPV+ TGGIP PEK+ PLG
Sbjct: 762 FIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKNHLAPFLPSHPVIPTGGIPQPEKTAPLG 821
Query: 841 TIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGT 900
I+AAPWGSALILPISYTYIAMMGS GLT+ASKIAILNANYMAKRLEKHYP+LFRGVNGT
Sbjct: 822 AISAAPWGSALILPISYTYIAMMGSGGLTDASKIAILNANYMAKRLEKHYPVLFRGVNGT 881
Query: 901 VAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKS 956
VAHEFI+DLRG KNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESK+
Sbjct: 882 VAHEFIIDLRGFKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKA 937
|
The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein. Arabidopsis thaliana (taxid: 3702) EC: 1 EC: . EC: 4 EC: . EC: 4 EC: . EC: 2 |
| >sp|O80988|GCSP1_ARATH Glycine dehydrogenase [decarboxylating] 1, mitochondrial OS=Arabidopsis thaliana GN=GDCSP PE=1 SV=1 | Back alignment and function description |
|---|
Score = 1637 bits (4240), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 798/958 (83%), Positives = 860/958 (89%), Gaps = 17/958 (1%)
Query: 1 MERARRLASRAFLKRLVNESKQLSRNHRESKSSAAAAATYTPSRYLSSLSCAPFVCSNNS 60
MERARRLA R +KRLVNE+K+ HR +SS T TPSRY+SS+S
Sbjct: 1 MERARRLAYRGIVKRLVNETKR----HRNGESSLLPTTTVTPSRYVSSVS---------- 46
Query: 61 RSDLLQSRNMSHHNVNGYGLGS-QTRGISVEALKPSDTFARRHNSATPEDQAKMSELVGL 119
S L + R++S G QTR ISV+ALKPSDTF RRHNSATP++QA+M+ G
Sbjct: 47 -SFLHRRRDVSGSAFTTSGRNQHQTRSISVDALKPSDTFPRRHNSATPDEQAQMANYCGF 105
Query: 120 DNLDSLIDATVPKSIRIDSMKFSK-FDEGLTESQMIEHMQKLASMNKVYKSFIGMGYYNT 178
DNL++LID+TVPKSIR+DSMKFS FDEGLTESQMIEHM LAS NKV+KSFIGMGYYNT
Sbjct: 106 DNLNTLIDSTVPKSIRLDSMKFSGIFDEGLTESQMIEHMSDLASKNKVFKSFIGMGYYNT 165
Query: 179 HVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMSNASLLDEGT 238
HVPPVILRNIMENPAWYTQYTPYQAEI+QGRLESLLN+QT+I DLTGLPMSNASLLDEGT
Sbjct: 166 HVPPVILRNIMENPAWYTQYTPYQAEISQGRLESLLNYQTVITDLTGLPMSNASLLDEGT 225
Query: 239 AAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDLKDIDYKSGDV 298
AAAEAMAMCNNI KGKKKTF+IASNCHPQTID+C TRADGFD+KVV D+KD+DY SGDV
Sbjct: 226 AAAEAMAMCNNILKGKKKTFVIASNCHPQTIDVCKTRADGFDLKVVTVDIKDVDYSSGDV 285
Query: 299 CGVLVQYPGTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKPPGELGADIVVGSAQR 358
CGVLVQYPGTEGEVLDYG+F+KNAHANGVKVVMATDLLALT+LKPPGE GADIVVGS QR
Sbjct: 286 CGVLVQYPGTEGEVLDYGEFVKNAHANGVKVVMATDLLALTMLKPPGEFGADIVVGSGQR 345
Query: 359 FGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATS 418
FGVPMGYGGPHAAFLATSQEYKRMMPGRI+GVS+DSSGK ALR+AMQTREQHIRRDKATS
Sbjct: 346 FGVPMGYGGPHAAFLATSQEYKRMMPGRIIGVSVDSSGKQALRMAMQTREQHIRRDKATS 405
Query: 419 NICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDTV 478
NICTAQALLANM AMYAVYHGPEGLK+IAQRVHGLAG FALGLKKLGT +VQ LPFFDTV
Sbjct: 406 NICTAQALLANMTAMYAVYHGPEGLKSIAQRVHGLAGVFALGLKKLGTAQVQDLPFFDTV 465
Query: 479 KVKCADAHAIASAAYKIEMNLRVVDSNTVTASFDETTTLEDVDKLFIVFAGGKSVPFTAA 538
KV C+DA AI A K E+NLR+VDSNT+T +FDETTTL+DVDKLF VFA GK V FTA
Sbjct: 466 KVTCSDATAIFDVAAKKEINLRLVDSNTITVAFDETTTLDDVDKLFEVFASGKPVQFTAE 525
Query: 539 SLAEEVETAIPSGLTRESPYLTHPVFNKYHTEHELLRYIHLLQSKELSLCHSMIPLGSCT 598
SLA E AIPS LTRESPYLTHP+FN YHTEHELLRYIH LQ+K+LSLCHSMIPLGSCT
Sbjct: 526 SLAPEFNNAIPSSLTRESPYLTHPIFNMYHTEHELLRYIHKLQNKDLSLCHSMIPLGSCT 585
Query: 599 MKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFDSFSLQPNAGA 658
MKLNATTEMMPVTWPSF N+HPFAP +QAQGYQEMF NLGE LCTITGFDSFSLQPNAGA
Sbjct: 586 MKLNATTEMMPVTWPSFTNMHPFAPVEQAQGYQEMFTNLGELLCTITGFDSFSLQPNAGA 645
Query: 659 AGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKGNINIE 718
AGEYAGLMVIRAYH +RGDHHRNVCIIPVSAHGTNPA+AAMCGMKIV+VGTDAKGNINIE
Sbjct: 646 AGEYAGLMVIRAYHMSRGDHHRNVCIIPVSAHGTNPASAAMCGMKIVAVGTDAKGNINIE 705
Query: 719 ELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTS 778
ELR AAEAN+DNL+ LMVTYPSTHGVYEEGIDEIC IIH+NGGQVYMDGANMNAQVGLTS
Sbjct: 706 ELRNAAEANKDNLAALMVTYPSTHGVYEEGIDEICNIIHENGGQVYMDGANMNAQVGLTS 765
Query: 779 PGYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQP 838
PG+IGADVCHLNLHKTFCIPHGGGGPGMGPIGVK+HLAPFLPSHPV+ TGGIP PE++ P
Sbjct: 766 PGFIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKQHLAPFLPSHPVIPTGGIPEPEQTSP 825
Query: 839 LGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVN 898
LGTI+AAPWGSALILPISYTYIAMMGS GLT+ASKIAILNANYMAKRLE HYP+LFRGVN
Sbjct: 826 LGTISAAPWGSALILPISYTYIAMMGSGGLTDASKIAILNANYMAKRLESHYPVLFRGVN 885
Query: 899 GTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKS 956
GTVAHEFI+DLRG KNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESK+
Sbjct: 886 GTVAHEFIIDLRGFKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKA 943
|
The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein. Arabidopsis thaliana (taxid: 3702) EC: 1 EC: . EC: 4 EC: . EC: 4 EC: . EC: 2 |
| >sp|P26969|GCSP_PEA Glycine dehydrogenase [decarboxylating], mitochondrial OS=Pisum sativum GN=GDCSP PE=1 SV=1 | Back alignment and function description |
|---|
Score = 1602 bits (4149), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 801/964 (83%), Positives = 865/964 (89%), Gaps = 17/964 (1%)
Query: 1 MERARRLASRAFLKRLVNESKQLSRNHRESKSSAAAAATYTPSRYLSSLSCAPFVCSNNS 60
MERARRLA+RA LKRL++E+KQ K+ + + T TP + SLS + ++
Sbjct: 1 MERARRLANRATLKRLLSEAKQ------NRKTESTSTTTTTPLPF--SLSGSSSRYVSSV 52
Query: 61 RSDLLQSR-----NMSHHNVNGY---GLGSQTRGISVEALKPSDTFARRHNSATPEDQAK 112
+ +L+ R N V G+ G SQ+R ISVEALKPSDTF RRHNSATP++Q K
Sbjct: 53 SNSILRGRGSKPDNNVSRRVGGFLGVGYPSQSRSISVEALKPSDTFPRRHNSATPDEQTK 112
Query: 113 MSELVGLDNLDSLIDATVPKSIRIDSMKFSKFDEGLTESQMIEHMQKLASMNKVYKSFIG 172
M+E VG D LDSL+DATVPKSIR+ MKF+KFD GLTE QMIEHM+ LAS NKV+KSFIG
Sbjct: 113 MAESVGFDTLDSLVDATVPKSIRLKEMKFNKFDGGLTEGQMIEHMKDLASKNKVFKSFIG 172
Query: 173 MGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMSNAS 232
MGYYNTHVPPVILRNIMENPAWYTQYTPYQAEI+QGRLESLLNFQTMI DLTGLPMSNAS
Sbjct: 173 MGYYNTHVPPVILRNIMENPAWYTQYTPYQAEISQGRLESLLNFQTMITDLTGLPMSNAS 232
Query: 233 LLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDLKDID 292
LLDEGTAAAEAM+MCNNIQKGKKKTFIIASNCHPQTIDIC TRADGF++KVVV DLKDID
Sbjct: 233 LLDEGTAAAEAMSMCNNIQKGKKKTFIIASNCHPQTIDICQTRADGFELKVVVKDLKDID 292
Query: 293 YKSGDVCGVLVQYPGTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKPPGELGADIV 352
YKSGDVCGVLVQYPGTEGEVLDYG+FIK AHAN VKVVMA+DLLALT+LKPPGE GADIV
Sbjct: 293 YKSGDVCGVLVQYPGTEGEVLDYGEFIKKAHANEVKVVMASDLLALTVLKPPGEFGADIV 352
Query: 353 VGSAQRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIR 412
VGSAQRFGVPMGYGGPHAAFLATSQEYKRMMPGRI+GVS+DSSGK ALR+AMQTREQHIR
Sbjct: 353 VGSAQRFGVPMGYGGPHAAFLATSQEYKRMMPGRIIGVSVDSSGKQALRMAMQTREQHIR 412
Query: 413 RDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGL 472
RDKATSNICTAQALLANMAAMYAVYHGPEGLK IAQRVHGLAG FALGLKKLG +EVQ L
Sbjct: 413 RDKATSNICTAQALLANMAAMYAVYHGPEGLKAIAQRVHGLAGVFALGLKKLG-LEVQDL 471
Query: 473 PFFDTVKVKCADAHAIASAAYKIEMNLRVVDSNTVTASFDETTTLEDVDKLFIVFAGGKS 532
FFDTVKVK ++A AIA AA K E+NLRVVD NT+TA+FDETTTLEDVDKLF VFAGGK
Sbjct: 472 GFFDTVKVKTSNAKAIADAAIKSEINLRVVDGNTITAAFDETTTLEDVDKLFKVFAGGKP 531
Query: 533 VPFTAASLAEEVETAIPSGLTRESPYLTHPVFNKYHTEHELLRYIHLLQSKELSLCHSMI 592
V FTAASLA E + AIPSGL RESPYLTHP+FN Y TEHELLRYIH LQSK+LSLCHSMI
Sbjct: 532 VSFTAASLAPEFQNAIPSGLVRESPYLTHPIFNTYQTEHELLRYIHRLQSKDLSLCHSMI 591
Query: 593 PLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFDSFSL 652
PLGSCTMKLNATTEMMPVTWPSF ++HPFAP +QAQGYQEMFNNLG+ LCTITGFDSFSL
Sbjct: 592 PLGSCTMKLNATTEMMPVTWPSFTDLHPFAPTEQAQGYQEMFNNLGDLLCTITGFDSFSL 651
Query: 653 QPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAK 712
QPNAGAAGEYAGLMVIRAYH +RGDHHRNVCIIP SAHGTNPA+AAM GMKIV++GTDAK
Sbjct: 652 QPNAGAAGEYAGLMVIRAYHLSRGDHHRNVCIIPASAHGTNPASAAMVGMKIVTIGTDAK 711
Query: 713 GNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNA 772
GNINIEEL+KAAE ++DNLS MVTYPSTHGVYEEGID+ICKIIHDNGGQVYMDGANMNA
Sbjct: 712 GNINIEELKKAAEKHKDNLSAFMVTYPSTHGVYEEGIDDICKIIHDNGGQVYMDGANMNA 771
Query: 773 QVGLTSPGYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPA 832
QVGLTSPG+IGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVV TGGIPA
Sbjct: 772 QVGLTSPGWIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVPTGGIPA 831
Query: 833 PEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPI 892
PE QPLG+I+AAPWGSALILPISYTYIAMMGS+GLT+ASKIAILNANYMAKRLE +YP+
Sbjct: 832 PENPQPLGSISAAPWGSALILPISYTYIAMMGSQGLTDASKIAILNANYMAKRLESYYPV 891
Query: 893 LFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTES 952
LFRGVNGTVAHEFI+DLRG KNTAGIEPEDVAKRLMDYGFHGPTMSWPV GTLMIEPTES
Sbjct: 892 LFRGVNGTVAHEFIIDLRGFKNTAGIEPEDVAKRLMDYGFHGPTMSWPVAGTLMIEPTES 951
Query: 953 ESKS 956
ESK+
Sbjct: 952 ESKA 955
|
The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein. Pisum sativum (taxid: 3888) EC: 1 EC: . EC: 4 EC: . EC: 4 EC: . EC: 2 |
| >sp|Q3M9G1|GCSP_ANAVT Glycine dehydrogenase [decarboxylating] OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=gcvP PE=3 SV=1 | Back alignment and function description |
|---|
Score = 1039 bits (2687), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 511/863 (59%), Positives = 644/863 (74%), Gaps = 16/863 (1%)
Query: 96 DTFARRHNSATPEDQAKMSELVGLDNLDSLIDATVPKSIRIDSMKFSKFDEGLTESQMIE 155
+ F +RH + D M +++G +LD LI+ TVP +IR+ K + TE +
Sbjct: 32 NNFIQRHIGPSSADIQHMLDVLGFSSLDDLIEKTVPSTIRLH--KKLQLPTAQTEYAALA 89
Query: 156 HMQKLASMNKVYKSFIGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLN 215
++++AS N+V++S+IGMGYY+T PPVI RNI+ENP WYT YTPYQ EIAQGRLE+LLN
Sbjct: 90 KLKQIASKNQVFRSYIGMGYYDTITPPVIGRNILENPGWYTAYTPYQPEIAQGRLEALLN 149
Query: 216 FQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITR 275
FQTMI DLTGL ++NASLLDE TAAAEAM+M + K K + ++ +CHPQTID+ TR
Sbjct: 150 FQTMIIDLTGLEIANASLLDEATAAAEAMSMSYGVSKNKANAYFVSHDCHPQTIDVLQTR 209
Query: 276 ADGFDIKVVVSDLKDIDYKSGDVCGVLVQYPGTEGEVLDYGDFIKNAHANGVKVVMATDL 335
A I++++ D + D++ + G ++QYP ++G + DY FI+ AHA G V +A D
Sbjct: 210 AKPLGIEIIIGDHQTFDFQK-PIFGAVLQYPASDGTIYDYRAFIETAHAQGALVTVAADP 268
Query: 336 LALTILKPPGELGADIVVGSAQRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSS 395
L+LT+L PPGE GADI VGS QRFG+P+G+GGPHAA+ AT +EYKR +PGRIVGVS D +
Sbjct: 269 LSLTLLTPPGEFGADIAVGSTQRFGIPLGFGGPHAAYFATKEEYKRQVPGRIVGVSKDVN 328
Query: 396 GKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAG 455
GK ALR+A+QTREQHIRR+KATSNICTAQ LLA MA+MYAVYHGPEGLK IA+ +H L
Sbjct: 329 GKTALRLALQTREQHIRREKATSNICTAQVLLAVMASMYAVYHGPEGLKQIAENIHQLTV 388
Query: 456 TFALGLKKLGTVEVQGLPFFDTVKVKCA--DAHAIASAAYKIEMNLRVVDSNTVTASFDE 513
T A GLK+LG ++ FFDT++V+ + I + +NLR+ D V S DE
Sbjct: 389 TLAEGLKRLG-YKISSEHFFDTLRVELGTNNLETILAGCQARNINLRIFDETAVGISLDE 447
Query: 514 TTTLEDVDKLFIVFAGGKSVPFTAASLAEEVETAIPSGLTRESPYLTHPVFNKYHTEHEL 573
TTT ED+ L+ +FAG ++PFT L + + R S YLTHPVFN+YH+E EL
Sbjct: 448 TTTPEDLIDLWQIFAGEDNLPFTPEELISSLNLPL-----RSSSYLTHPVFNRYHSETEL 502
Query: 574 LRYIHLLQSKELSLCHSMIPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEM 633
LRY+H L++K+LSL SMIPLGSCTMKLNAT+EM+PVTW F IHPFAP Q +GYQ +
Sbjct: 503 LRYLHRLETKDLSLTTSMIPLGSCTMKLNATSEMIPVTWEEFGRIHPFAPLTQTRGYQIL 562
Query: 634 FNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTN 693
F L WL ITGF +LQPNAG+ GEY GL+VIR YH++RG+ HRNVC+IP SAHGTN
Sbjct: 563 FQQLEAWLAEITGFAGVALQPNAGSQGEYTGLLVIRQYHESRGETHRNVCLIPTSAHGTN 622
Query: 694 PATAAMCGMKIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEIC 753
PA+A MCGMK+V+V DA GNI+I++L+ AE + L+ LMVTYPSTHGV+E GI EIC
Sbjct: 623 PASAVMCGMKVVAVACDAGGNIDIDDLKAKAEKHSHELAALMVTYPSTHGVFEAGIQEIC 682
Query: 754 KIIHDNGGQVYMDGANMNAQVGLTSPGYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKK 813
+IH +GGQVYMDGANMNAQVG+ PG IGADVCHLNLHKTFCIPHGGGGPGMGPIGV
Sbjct: 683 AVIHSHGGQVYMDGANMNAQVGICRPGDIGADVCHLNLHKTFCIPHGGGGPGMGPIGVAS 742
Query: 814 HLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASK 873
HL FLP HPV+ +G P Q +G +AAAPWGSA IL IS+ YIAMMG+ GLT+A+K
Sbjct: 743 HLVRFLPGHPVLGSGKNP-----QNIGAVAAAPWGSASILVISWMYIAMMGADGLTQATK 797
Query: 874 IAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFH 933
+AILNANY+AKRLE +YP+L++G NG VAHE I+DLR LK +A IE +D+AKRL+DYGFH
Sbjct: 798 VAILNANYIAKRLETYYPVLYKGQNGLVAHECILDLRALKKSANIEIDDIAKRLIDYGFH 857
Query: 934 GPTMSWPVPGTLMIEPTESESKS 956
PT+SWPV GT+M+EPTESES++
Sbjct: 858 APTVSWPVTGTIMVEPTESESQA 880
|
The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein. Anabaena variabilis (strain ATCC 29413 / PCC 7937) (taxid: 240292) EC: 1 EC: . EC: 4 EC: . EC: 4 EC: . EC: 2 |
| >sp|Q8YNF9|GCSP_NOSS1 Glycine dehydrogenase [decarboxylating] OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=gcvP PE=3 SV=1 | Back alignment and function description |
|---|
Score = 1036 bits (2678), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 511/870 (58%), Positives = 646/870 (74%), Gaps = 21/870 (2%)
Query: 96 DTFARRHNSATPEDQAKMSELVGLDNLDSLIDATVPKSIRIDSMKFSKFDEGLTESQMIE 155
+ F +RH + D +M +++G +LD LI+ TVP +IR+ + E TE +
Sbjct: 32 NNFIQRHIGPSSADIQQMLDVLGFSSLDDLIEKTVPSAIRLHEQL--QLPEAQTEYAALA 89
Query: 156 HMQKLASMNKVYKSFIGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLN 215
++++AS N+V++S+IGMGYY+T P VI RNI+ENP WYT YTPYQ EIAQGRLE+LLN
Sbjct: 90 KLKQIASKNQVFRSYIGMGYYDTITPSVIGRNILENPGWYTAYTPYQPEIAQGRLEALLN 149
Query: 216 FQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITR 275
FQTMI DLTGL ++NASLLDE TAAAEAM+M + K K + ++ +CHPQ ID+ TR
Sbjct: 150 FQTMIIDLTGLEIANASLLDEATAAAEAMSMSYGVSKNKANAYFVSHDCHPQIIDVLQTR 209
Query: 276 ADGFDIKVVVSDLKDIDYKSGDVCGVLVQYPGTEGEVLDYGDFIKNAHANGVKVVMATDL 335
A I++++ D + D+ + G ++QYP ++G + DY FI+ +HA G V +A D
Sbjct: 210 AKPLGIEIIIGDHQTFDFDK-PIFGAVLQYPASDGTIYDYRAFIETSHAQGALVTVAADP 268
Query: 336 LALTILKPPGELGADIVVGSAQRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSS 395
L+LT+L PPGE GADI VGS QRFG+P+G+GGPHAA+ AT +EYKR +PGRIVGVS D
Sbjct: 269 LSLTLLTPPGEFGADIAVGSTQRFGIPLGFGGPHAAYFATKEEYKRQVPGRIVGVSKDVH 328
Query: 396 GKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAG 455
GK ALR+A+QTREQHIRR+KATSNICTAQ LLA MA+MYAVYHGPEGLK IA+R+H L
Sbjct: 329 GKTALRLALQTREQHIRREKATSNICTAQVLLAVMASMYAVYHGPEGLKQIAERIHHLTL 388
Query: 456 TFALGLKKLG-TVEVQGLPFFDTVKVKCADA--HAIASAAYKIEMNLRVVDSNTVTASFD 512
+ L++LG T+ Q FFDT+++K + I AA +NLR+VD++TV S D
Sbjct: 389 VLGVWLQRLGYTITSQS--FFDTLQIKLGEKPLQEILEAAEAYRINLRIVDTSTVGISLD 446
Query: 513 ETTTLEDVDKLFIVFAGGKSVPFTAASLAEEVETAIPSG------LTRESPYLTHPVFNK 566
ETTTLEDV + +FAG +PF +E + I +R+S YLTHPVFN+
Sbjct: 447 ETTTLEDVKDICRIFAGTDELPFVLN--VQEFDWIIQQSSLKDEPFSRQSSYLTHPVFNR 504
Query: 567 YHTEHELLRYIHLLQSKELSLCHSMIPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQ 626
YH+E ELLRY+H L++K+LSL SMIPLGSCTMKLNAT+EM+PVTW F IHPFAP Q
Sbjct: 505 YHSETELLRYLHRLETKDLSLTTSMIPLGSCTMKLNATSEMIPVTWEEFGRIHPFAPLTQ 564
Query: 627 AQGYQEMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIP 686
+GYQ +F L WL ITGF SLQPNAG+ GEY GL+VIR YH++RG+ HRNVC+IP
Sbjct: 565 TRGYQILFQQLEAWLGEITGFAGVSLQPNAGSQGEYTGLLVIRQYHQSRGETHRNVCLIP 624
Query: 687 VSAHGTNPATAAMCGMKIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPSTHGVYE 746
SAHGTNPA+A MCGMK+V+V DA GNI+I++L+ AE + L+ LMVTYPSTHGV+E
Sbjct: 625 NSAHGTNPASAVMCGMKVVAVACDAGGNIDIDDLKAKAEKHSHELAALMVTYPSTHGVFE 684
Query: 747 EGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIGADVCHLNLHKTFCIPHGGGGPGM 806
GI EIC +IH +GGQVYMDGANMNAQVG+ PG IGADVCHLNLHKTFCIPHGGGGPGM
Sbjct: 685 AGIQEICAVIHSHGGQVYMDGANMNAQVGICRPGDIGADVCHLNLHKTFCIPHGGGGPGM 744
Query: 807 GPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSK 866
GPIGV HL PFLP HPV+ +G P Q +G +AAAPWGSA IL IS+ YI MMG+
Sbjct: 745 GPIGVASHLVPFLPGHPVLESGKNP-----QNIGAVAAAPWGSASILVISWMYIVMMGAD 799
Query: 867 GLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKR 926
GLT+A+K+AILNANY+AK+L +YP+L++G NG VAHE I+DLR LK +A IE +D+AKR
Sbjct: 800 GLTQATKVAILNANYIAKKLAAYYPVLYKGQNGLVAHECILDLRALKKSANIEIDDIAKR 859
Query: 927 LMDYGFHGPTMSWPVPGTLMIEPTESESKS 956
L+DYGFH PT+SWPV GT+M+EPTESES++
Sbjct: 860 LIDYGFHAPTVSWPVAGTIMVEPTESESQA 889
|
The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein. Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690) EC: 1 EC: . EC: 4 EC: . EC: 4 EC: . EC: 2 |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 985 | ||||||
| 224088838 | 1060 | precursor of carboxylase p-protein 1, gl | 0.967 | 0.899 | 0.865 | 0.0 | |
| 134142800 | 1060 | mitochondrial glycine decarboxylase comp | 0.967 | 0.899 | 0.866 | 0.0 | |
| 1346116 | 1037 | RecName: Full=Glycine dehydrogenase [dec | 0.949 | 0.901 | 0.854 | 0.0 | |
| 438003 | 1037 | P protein [Flaveria pringlei] | 0.949 | 0.901 | 0.852 | 0.0 | |
| 1346117 | 1034 | RecName: Full=Glycine dehydrogenase [dec | 0.946 | 0.901 | 0.855 | 0.0 | |
| 3334199 | 1034 | RecName: Full=Glycine dehydrogenase [dec | 0.946 | 0.901 | 0.853 | 0.0 | |
| 3334198 | 1034 | RecName: Full=Glycine dehydrogenase [dec | 0.946 | 0.901 | 0.855 | 0.0 | |
| 359476246 | 1043 | PREDICTED: glycine dehydrogenase [decarb | 0.956 | 0.903 | 0.852 | 0.0 | |
| 356564051 | 1056 | PREDICTED: glycine dehydrogenase [decarb | 0.968 | 0.903 | 0.844 | 0.0 | |
| 3334200 | 1035 | RecName: Full=Glycine dehydrogenase [dec | 0.948 | 0.902 | 0.837 | 0.0 |
| >gi|224088838|ref|XP_002308562.1| precursor of carboxylase p-protein 1, glycine decarboxylase complex [Populus trichocarpa] gi|222854538|gb|EEE92085.1| precursor of carboxylase p-protein 1, glycine decarboxylase complex [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1673 bits (4333), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 832/961 (86%), Positives = 892/961 (92%), Gaps = 8/961 (0%)
Query: 1 MERARRLASRAFLKRLVNESKQLSRNHRESKSSAAAAAT--YTPSRYLSSLSCAPFVCSN 58
MERARRLA+RA LKRLVNESKQ + R S +++ YTPSRY+SSLS S
Sbjct: 1 MERARRLANRAILKRLVNESKQSHKQARNDSSLLNSSSPVSYTPSRYVSSLSSF---GSR 57
Query: 59 NSRSDLLQ-SRNMSHHNV--NGYGLGSQTRGISVEALKPSDTFARRHNSATPEDQAKMSE 115
+ RS LL ++N+ HNV YG+GSQ R ISVE+LKPSDTF RRHNSATPE+Q KM+E
Sbjct: 58 SPRSGLLPGTKNIVSHNVPAGSYGIGSQIRSISVESLKPSDTFPRRHNSATPEEQTKMAE 117
Query: 116 LVGLDNLDSLIDATVPKSIRIDSMKFSKFDEGLTESQMIEHMQKLASMNKVYKSFIGMGY 175
L G D LDSLIDATVPKSIR+DSMKFSKFD GLTESQMIEHM LAS NKV+KS+IGMGY
Sbjct: 118 LCGFDTLDSLIDATVPKSIRLDSMKFSKFDGGLTESQMIEHMNYLASKNKVFKSYIGMGY 177
Query: 176 YNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMSNASLLD 235
YNTHVPPVILRNIMENPAWYTQYTPYQAEI+QGRLESLLN+QTMI DLTGLPMSNASLLD
Sbjct: 178 YNTHVPPVILRNIMENPAWYTQYTPYQAEISQGRLESLLNYQTMITDLTGLPMSNASLLD 237
Query: 236 EGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDLKDIDYKS 295
EGTAAAEAMAMCNNIQKGKKKTFIIA+NCHPQTIDIC TRA GFD+KVV +DLKDIDYKS
Sbjct: 238 EGTAAAEAMAMCNNIQKGKKKTFIIANNCHPQTIDICDTRAGGFDLKVVTADLKDIDYKS 297
Query: 296 GDVCGVLVQYPGTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKPPGELGADIVVGS 355
GDVCGVLVQYPGTEGEVLDYG+FIKNAHA+GVKVVMA+DLLALT+LKPPGELGADIVVGS
Sbjct: 298 GDVCGVLVQYPGTEGEVLDYGEFIKNAHAHGVKVVMASDLLALTMLKPPGELGADIVVGS 357
Query: 356 AQRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDK 415
AQRFGVPMGYGGPHAAFLATSQEYKRMMPGRI+GVS+DSSGKPALR+AMQTREQHIRRDK
Sbjct: 358 AQRFGVPMGYGGPHAAFLATSQEYKRMMPGRIIGVSVDSSGKPALRMAMQTREQHIRRDK 417
Query: 416 ATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFF 475
ATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAG F +GLKKLGTVEVQGLPFF
Sbjct: 418 ATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGAFTVGLKKLGTVEVQGLPFF 477
Query: 476 DTVKVKCADAHAIASAAYKIEMNLRVVDSNTVTASFDETTTLEDVDKLFIVFAGGKSVPF 535
DTVKVKCADAHAIA AAYK E+NLRVVD+ T+T SFDETTTLEDVDKLF VF+GGK VPF
Sbjct: 478 DTVKVKCADAHAIADAAYKSEINLRVVDAKTITVSFDETTTLEDVDKLFKVFSGGKPVPF 537
Query: 536 TAASLAEEVETAIPSGLTRESPYLTHPVFNKYHTEHELLRYIHLLQSKELSLCHSMIPLG 595
TAASLA EV+ IPSGLTRESPYLTHP+FN YHTEHELLRY+H LQSK+LSLCHSMIPLG
Sbjct: 538 TAASLAPEVQNVIPSGLTRESPYLTHPIFNTYHTEHELLRYMHRLQSKDLSLCHSMIPLG 597
Query: 596 SCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFDSFSLQPN 655
SCTMKLNAT+EMMPVT P+F ++HPFAP +Q+QGYQEMF++LG+ LCTITGFDSFS QPN
Sbjct: 598 SCTMKLNATSEMMPVTLPNFTDMHPFAPTEQSQGYQEMFDDLGDLLCTITGFDSFSFQPN 657
Query: 656 AGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKGNI 715
AGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPA+AAMCGMKIV+VGTDAKGNI
Sbjct: 658 AGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPASAAMCGMKIVAVGTDAKGNI 717
Query: 716 NIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVG 775
N+EELRKAAE NRDNLS LMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVG
Sbjct: 718 NVEELRKAAEDNRDNLSALMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVG 777
Query: 776 LTSPGYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEK 835
LTSPG+IGADVCHLNLHKTFCIPHGGGGPGMGPIGV+KHLAP+LPSHPVV TGGIPAP++
Sbjct: 778 LTSPGFIGADVCHLNLHKTFCIPHGGGGPGMGPIGVQKHLAPYLPSHPVVPTGGIPAPDQ 837
Query: 836 SQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFR 895
SQPLGTI+AAPWGSALILPISYTYIAMMGSKGLT+ASKIAILNANYMAKRLE +YPILFR
Sbjct: 838 SQPLGTISAAPWGSALILPISYTYIAMMGSKGLTDASKIAILNANYMAKRLENYYPILFR 897
Query: 896 GVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESK 955
GVNGTVAHEFIVDLRG+KNTAGIEPEDVAKRLMDYGFH PTMSWPVPGTLMIEPTESESK
Sbjct: 898 GVNGTVAHEFIVDLRGVKNTAGIEPEDVAKRLMDYGFHAPTMSWPVPGTLMIEPTESESK 957
Query: 956 S 956
+
Sbjct: 958 A 958
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|134142800|gb|ABO61734.1| mitochondrial glycine decarboxylase complex P-protein [Populus tremuloides] | Back alignment and taxonomy information |
|---|
Score = 1671 bits (4327), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 833/961 (86%), Positives = 894/961 (93%), Gaps = 8/961 (0%)
Query: 1 MERARRLASRAFLKRLVNESKQLSRNHRESKSSAAAAAT--YTPSRYLSSLSCAPFVCSN 58
MERARRLA+RA LKRLVNESKQ + R S +++ YTPSRY+SSLS S
Sbjct: 1 MERARRLANRAILKRLVNESKQSHKQARNDSSLLNSSSPVSYTPSRYVSSLSSF---GSR 57
Query: 59 NSRSDLLQ-SRNMSHHNVNG--YGLGSQTRGISVEALKPSDTFARRHNSATPEDQAKMSE 115
+ RS LL ++N+ NV YG+GSQ R ISVE+LKPSDTF RRHNSATPE+Q KM+E
Sbjct: 58 SPRSGLLPGTKNIVSRNVPAGYYGIGSQIRSISVESLKPSDTFPRRHNSATPEEQTKMAE 117
Query: 116 LVGLDNLDSLIDATVPKSIRIDSMKFSKFDEGLTESQMIEHMQKLASMNKVYKSFIGMGY 175
L G D LDSLIDATVPKSIR+DSMKFSKFD GLTESQMIEHM+ LAS NKV+KS+IGMGY
Sbjct: 118 LCGFDTLDSLIDATVPKSIRLDSMKFSKFDGGLTESQMIEHMKYLASKNKVFKSYIGMGY 177
Query: 176 YNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMSNASLLD 235
YNT+VPPVILRNIMENPAWYTQYTPYQAEI+QGRLESLLN+QTMI DLTGLPMSNASLLD
Sbjct: 178 YNTYVPPVILRNIMENPAWYTQYTPYQAEISQGRLESLLNYQTMITDLTGLPMSNASLLD 237
Query: 236 EGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDLKDIDYKS 295
EGTAAAEAMAMCNNIQKGKKKTFIIA+NCHPQTIDIC TRA GFD+KVV +DLKDIDYKS
Sbjct: 238 EGTAAAEAMAMCNNIQKGKKKTFIIANNCHPQTIDICDTRAGGFDLKVVTADLKDIDYKS 297
Query: 296 GDVCGVLVQYPGTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKPPGELGADIVVGS 355
GDVCGVLVQYPGTEGEVLDYG+F+KNAHA+GVKVVMA+DLLALT+LKPPGELGADIVVGS
Sbjct: 298 GDVCGVLVQYPGTEGEVLDYGEFVKNAHAHGVKVVMASDLLALTMLKPPGELGADIVVGS 357
Query: 356 AQRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDK 415
AQRFGVPMGYGGPHAAFLATSQEYKRMMPGRI+GVS+DSSGKPALR+AMQTREQHIRRDK
Sbjct: 358 AQRFGVPMGYGGPHAAFLATSQEYKRMMPGRIIGVSVDSSGKPALRMAMQTREQHIRRDK 417
Query: 416 ATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFF 475
ATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAG FA+GLKKLGTVEVQGLPFF
Sbjct: 418 ATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGAFAVGLKKLGTVEVQGLPFF 477
Query: 476 DTVKVKCADAHAIASAAYKIEMNLRVVDSNTVTASFDETTTLEDVDKLFIVFAGGKSVPF 535
DTVKVKCADAHAIA AAYK E+NLRVVD+ T+TASFDETTTLEDVDKLF VF+GGK VPF
Sbjct: 478 DTVKVKCADAHAIADAAYKSEINLRVVDAKTITASFDETTTLEDVDKLFKVFSGGKPVPF 537
Query: 536 TAASLAEEVETAIPSGLTRESPYLTHPVFNKYHTEHELLRYIHLLQSKELSLCHSMIPLG 595
TAASLA EV+ IPSGLTRESPYLTHP+FN YHTEHELLRY+H LQSK+LSLCHSMIPLG
Sbjct: 538 TAASLAPEVQNVIPSGLTRESPYLTHPIFNTYHTEHELLRYMHRLQSKDLSLCHSMIPLG 597
Query: 596 SCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFDSFSLQPN 655
SCTMKLNAT+EMMPVT+P+F +IHPFAP +Q+QGYQEMF++LG LCTITGFDSFSLQPN
Sbjct: 598 SCTMKLNATSEMMPVTFPNFTDIHPFAPTEQSQGYQEMFDDLGNLLCTITGFDSFSLQPN 657
Query: 656 AGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKGNI 715
AGAAGEYAGLM IRAYHKARGDHHRNVCIIPVSAHGTNPA+AAMCGMKIV+VGTDAKGNI
Sbjct: 658 AGAAGEYAGLMGIRAYHKARGDHHRNVCIIPVSAHGTNPASAAMCGMKIVAVGTDAKGNI 717
Query: 716 NIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVG 775
N+EELRKAAE NRD LS LMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVG
Sbjct: 718 NVEELRKAAEDNRDKLSALMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVG 777
Query: 776 LTSPGYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEK 835
LTSPG+IGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAP+LPSHPVVSTGGIPAP++
Sbjct: 778 LTSPGFIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPYLPSHPVVSTGGIPAPDQ 837
Query: 836 SQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFR 895
SQPLGTI+AAPWGSALILPISYTYIAMMGSKGLT+ASKIAILNANYMAKRLE +YPILFR
Sbjct: 838 SQPLGTISAAPWGSALILPISYTYIAMMGSKGLTDASKIAILNANYMAKRLENYYPILFR 897
Query: 896 GVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESK 955
GVNGTVAHEFIVDLRG+KNTAGIEPEDVAKRLMDYGFH PTMSWPVPGTLMIEPTESESK
Sbjct: 898 GVNGTVAHEFIVDLRGVKNTAGIEPEDVAKRLMDYGFHAPTMSWPVPGTLMIEPTESESK 957
Query: 956 S 956
+
Sbjct: 958 A 958
|
Source: Populus tremuloides Species: Populus tremuloides Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|1346116|sp|P49361.1|GCSPA_FLAPR RecName: Full=Glycine dehydrogenase [decarboxylating] A, mitochondrial; AltName: Full=Glycine cleavage system P protein A; AltName: Full=Glycine decarboxylase A; Flags: Precursor gi|608712|emb|CAA85353.1| P-protein of the glycine cleavage system [Flaveria pringlei] | Back alignment and taxonomy information |
|---|
Score = 1665 bits (4311), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 818/957 (85%), Positives = 874/957 (91%), Gaps = 22/957 (2%)
Query: 1 MERARRLASRAFLKRLVNESKQLSRNHRESKSSAAAAATYTPSRYLSSLSCAPFVCS-NN 59
MERARRLA++A L RLV+++K H S SS A +PSRY+SSLS P+VCS N
Sbjct: 1 MERARRLANKAILGRLVSQTK-----HNPSISSPALC---SPSRYVSSLS--PYVCSGTN 50
Query: 60 SRSDLLQSRNMSHHNVNGYGLGSQTRGISVEALKPSDTFARRHNSATPEDQAKMSELVGL 119
RSD N+NG+G SQ R ISVEALKPSDTF RRHNSATPE+Q KM+E VG
Sbjct: 51 VRSD---------RNLNGFG--SQVRTISVEALKPSDTFPRRHNSATPEEQTKMAEFVGF 99
Query: 120 DNLDSLIDATVPKSIRIDSMKFSKFDEGLTESQMIEHMQKLASMNKVYKSFIGMGYYNTH 179
NLDSLIDATVPKSIR+DSMK+SKFDEGLTESQMI HMQ LAS NK++KSFIGMGYYNT
Sbjct: 100 PNLDSLIDATVPKSIRLDSMKYSKFDEGLTESQMIAHMQDLASKNKIFKSFIGMGYYNTS 159
Query: 180 VPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTA 239
VP VILRNIMENP WYTQYTPYQAEIAQGRLESLLNFQTM+ DLTGLPMSNASLLDEGTA
Sbjct: 160 VPTVILRNIMENPGWYTQYTPYQAEIAQGRLESLLNFQTMVTDLTGLPMSNASLLDEGTA 219
Query: 240 AAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDLKDIDYKSGDVC 299
AAEAMAMCNNIQKGKKKTFIIASNCHPQTIDIC TRADGFD+KVV SDLKD DY SGDVC
Sbjct: 220 AAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICKTRADGFDLKVVTSDLKDFDYSSGDVC 279
Query: 300 GVLVQYPGTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKPPGELGADIVVGSAQRF 359
GVLVQYPGTEGE+LDY +FIKNAHANGVKVVMA+DLLALTILKPPGELGADIVVGSAQRF
Sbjct: 280 GVLVQYPGTEGELLDYSEFIKNAHANGVKVVMASDLLALTILKPPGELGADIVVGSAQRF 339
Query: 360 GVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSN 419
GVPMGYGGPHAAFLATSQEYKRMMPGRI+GVS+DSSGKPALR+AMQTREQHIRRDKATSN
Sbjct: 340 GVPMGYGGPHAAFLATSQEYKRMMPGRIIGVSVDSSGKPALRMAMQTREQHIRRDKATSN 399
Query: 420 ICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDTVK 479
ICTAQALLANMAAM+ VYHGPEGLKTIA+RVHGLAGTFA GLKKLGTV+VQ LPFFDTVK
Sbjct: 400 ICTAQALLANMAAMFGVYHGPEGLKTIAKRVHGLAGTFAAGLKKLGTVQVQDLPFFDTVK 459
Query: 480 VKCADAHAIASAAYKIEMNLRVVDSNTVTASFDETTTLEDVDKLFIVFAGGKSVPFTAAS 539
V C D+ AIA AYK +MNLR+VD NT+T +FDETTT+EDVD LF VFA GK V FTAAS
Sbjct: 460 VTCVDSKAIAEEAYKHKMNLRIVDKNTITVAFDETTTIEDVDTLFKVFALGKPVTFTAAS 519
Query: 540 LAEEVETAIPSGLTRESPYLTHPVFNKYHTEHELLRYIHLLQSKELSLCHSMIPLGSCTM 599
+A EV+ AIPSGL RE+PYLTHP+FN YHTEHELLRYI LQSK+LSLCHSMIPLGSCTM
Sbjct: 520 IAPEVQDAIPSGLVRETPYLTHPIFNMYHTEHELLRYISKLQSKDLSLCHSMIPLGSCTM 579
Query: 600 KLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFDSFSLQPNAGAA 659
KLNATTEMMPVTWP+FA+IHPFAP +QAQGYQEMF NLG+ LCTITGFDSFSLQPNAGAA
Sbjct: 580 KLNATTEMMPVTWPAFADIHPFAPTEQAQGYQEMFKNLGDLLCTITGFDSFSLQPNAGAA 639
Query: 660 GEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKGNINIEE 719
GEYAGLMVIRAYH ARGDHHRNVCIIPVSAHGTNPA+AAMCGMKI++VGTD+KGNINIEE
Sbjct: 640 GEYAGLMVIRAYHMARGDHHRNVCIIPVSAHGTNPASAAMCGMKIITVGTDSKGNINIEE 699
Query: 720 LRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSP 779
LRKAAEAN++NLS LMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSP
Sbjct: 700 LRKAAEANKENLSALMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSP 759
Query: 780 GYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPL 839
G+IGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAP+LPSHPVV+TGGIPAPE+SQPL
Sbjct: 760 GWIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPYLPSHPVVATGGIPAPEQSQPL 819
Query: 840 GTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNG 899
GTIAAAPWGSALILPISYTYIAMMGS+G+T ASKIAILNANYMAKRLE HYPILFRGVNG
Sbjct: 820 GTIAAAPWGSALILPISYTYIAMMGSQGITNASKIAILNANYMAKRLENHYPILFRGVNG 879
Query: 900 TVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKS 956
TVAHEFIVDLR LK TAGIEPEDVAKRL+DYGFHGPTMSWPVPGTLMIEPTESESK+
Sbjct: 880 TVAHEFIVDLRPLKTTAGIEPEDVAKRLIDYGFHGPTMSWPVPGTLMIEPTESESKA 936
|
Source: Flaveria pringlei Species: Flaveria pringlei Genus: Flaveria Family: Asteraceae Order: Asterales Class: N/A Phylum: Streptophyta Superkingdom: |
| >gi|438003|emb|CAA81076.1| P protein [Flaveria pringlei] | Back alignment and taxonomy information |
|---|
Score = 1661 bits (4301), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 816/957 (85%), Positives = 873/957 (91%), Gaps = 22/957 (2%)
Query: 1 MERARRLASRAFLKRLVNESKQLSRNHRESKSSAAAAATYTPSRYLSSLSCAPFVCS-NN 59
M+RARRLA++A L RLV+++K H S SS A +PSRY+SSLS P+VCS N
Sbjct: 1 MDRARRLANKAILGRLVSQTK-----HNPSISSPALC---SPSRYVSSLS--PYVCSGTN 50
Query: 60 SRSDLLQSRNMSHHNVNGYGLGSQTRGISVEALKPSDTFARRHNSATPEDQAKMSELVGL 119
RSD N+NG+G SQ R ISVEALKPSDTF RRHNSATPE+Q KM+E VG
Sbjct: 51 VRSD---------RNLNGFG--SQVRTISVEALKPSDTFPRRHNSATPEEQTKMAEFVGF 99
Query: 120 DNLDSLIDATVPKSIRIDSMKFSKFDEGLTESQMIEHMQKLASMNKVYKSFIGMGYYNTH 179
NLDSLIDATVPKSIR+DSMK+SKFDEGLTESQMI HMQ LAS NK++KSFIGMGYYNT
Sbjct: 100 PNLDSLIDATVPKSIRLDSMKYSKFDEGLTESQMIAHMQDLASKNKIFKSFIGMGYYNTS 159
Query: 180 VPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTA 239
VP VILRNIMENP WYTQYTPYQAEIAQGRLESLLNFQTM+ DLTGLPMSNASLLDEGTA
Sbjct: 160 VPTVILRNIMENPGWYTQYTPYQAEIAQGRLESLLNFQTMVTDLTGLPMSNASLLDEGTA 219
Query: 240 AAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDLKDIDYKSGDVC 299
AAEAMAMCNNIQKGKKKTFIIASNCHPQTIDIC TRADGFD+KVV SDLKD DY SGDVC
Sbjct: 220 AAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICKTRADGFDLKVVTSDLKDFDYSSGDVC 279
Query: 300 GVLVQYPGTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKPPGELGADIVVGSAQRF 359
GVLVQYPGTEGE+LDY +FIKNAHANGVKVVMA+DLLALTILKPPGELGADIVVGSAQRF
Sbjct: 280 GVLVQYPGTEGELLDYSEFIKNAHANGVKVVMASDLLALTILKPPGELGADIVVGSAQRF 339
Query: 360 GVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSN 419
GVPMGYGGPHAAFLATSQEYKRMMPGRI+GVS+DSSGKPALR+AMQTREQHIRRDKATSN
Sbjct: 340 GVPMGYGGPHAAFLATSQEYKRMMPGRIIGVSVDSSGKPALRMAMQTREQHIRRDKATSN 399
Query: 420 ICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDTVK 479
ICTAQALLANMAAM+ VYHGPEGLKTIA+RVHGLAGTFA GLKKLGTV+VQ LPFFDTVK
Sbjct: 400 ICTAQALLANMAAMFGVYHGPEGLKTIAKRVHGLAGTFAAGLKKLGTVQVQDLPFFDTVK 459
Query: 480 VKCADAHAIASAAYKIEMNLRVVDSNTVTASFDETTTLEDVDKLFIVFAGGKSVPFTAAS 539
V C D+ AIA AYK +MNLR+VD NT+T +FDET T+EDVD LF VFA GK V FTAAS
Sbjct: 460 VTCVDSKAIAEEAYKHKMNLRIVDKNTITVAFDETITIEDVDTLFKVFALGKPVTFTAAS 519
Query: 540 LAEEVETAIPSGLTRESPYLTHPVFNKYHTEHELLRYIHLLQSKELSLCHSMIPLGSCTM 599
+A EV+ AIPSGL RE+PYLTHP+FN YHTEHELLRYI LQSK+LSLCHSMIPLGSCTM
Sbjct: 520 IAPEVQDAIPSGLVRETPYLTHPIFNMYHTEHELLRYISKLQSKDLSLCHSMIPLGSCTM 579
Query: 600 KLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFDSFSLQPNAGAA 659
KLNATTEMMPVTWP+FA+IHPFAP +QAQGYQEMF NLG+ LCTITGFDSFSLQPNAGAA
Sbjct: 580 KLNATTEMMPVTWPAFADIHPFAPTEQAQGYQEMFKNLGDLLCTITGFDSFSLQPNAGAA 639
Query: 660 GEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKGNINIEE 719
GEYAGLMVIRAYH ARGDHHRNVCIIPVSAHGTNPA+AAMCGMKI++VGTD+KGNINIEE
Sbjct: 640 GEYAGLMVIRAYHMARGDHHRNVCIIPVSAHGTNPASAAMCGMKIITVGTDSKGNINIEE 699
Query: 720 LRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSP 779
LRKAAEAN++NLS LMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSP
Sbjct: 700 LRKAAEANKENLSALMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSP 759
Query: 780 GYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPL 839
G+IGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAP+LPSHPVV+TGGIPAPE+SQPL
Sbjct: 760 GWIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPYLPSHPVVATGGIPAPEQSQPL 819
Query: 840 GTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNG 899
GTIAAAPWGSALILPISYTYIAMMGS+G+T ASKIAILNANYMAKRLE HYPILFRGVNG
Sbjct: 820 GTIAAAPWGSALILPISYTYIAMMGSQGITNASKIAILNANYMAKRLENHYPILFRGVNG 879
Query: 900 TVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKS 956
TVAHEFIVDLR LK TAGIEPEDVAKRL+DYGFHGPTMSWPVPGTLMIEPTESESK+
Sbjct: 880 TVAHEFIVDLRPLKTTAGIEPEDVAKRLIDYGFHGPTMSWPVPGTLMIEPTESESKA 936
|
Source: Flaveria pringlei Species: Flaveria pringlei Genus: Flaveria Family: Asteraceae Order: Asterales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|1346117|sp|P49362.1|GCSPB_FLAPR RecName: Full=Glycine dehydrogenase [decarboxylating] B, mitochondrial; AltName: Full=Glycine cleavage system P protein B; AltName: Full=Glycine decarboxylase B; Flags: Precursor gi|1000489|emb|CAA91000.1| P-protein precursor of glycine cleavage system [Flaveria pringlei] | Back alignment and taxonomy information |
|---|
Score = 1657 bits (4291), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 819/957 (85%), Positives = 871/957 (91%), Gaps = 25/957 (2%)
Query: 1 MERARRLASRAFLKRLVNESKQLSRNHRESKSSAAAAATYTPSRYLSSLSCAPFVCS-NN 59
MERARRLA L RLV+++K H S SS A +PSRY+SSLS P+VCS N
Sbjct: 1 MERARRLA---ILGRLVSQTK-----HNPSISSPALC---SPSRYVSSLS--PYVCSGTN 47
Query: 60 SRSDLLQSRNMSHHNVNGYGLGSQTRGISVEALKPSDTFARRHNSATPEDQAKMSELVGL 119
RSD N+NG+G SQ R ISVEALKPSDTF RRHNSATPE+Q KM+E VG
Sbjct: 48 VRSD---------RNLNGFG--SQVRTISVEALKPSDTFPRRHNSATPEEQTKMAEFVGF 96
Query: 120 DNLDSLIDATVPKSIRIDSMKFSKFDEGLTESQMIEHMQKLASMNKVYKSFIGMGYYNTH 179
NLDSLIDATVPKSIR+DSMK+SKFDEGLTESQMI HMQ LAS NK++KSFIGMGYYNT
Sbjct: 97 PNLDSLIDATVPKSIRLDSMKYSKFDEGLTESQMIAHMQDLASKNKIFKSFIGMGYYNTS 156
Query: 180 VPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTA 239
VP VILRNIMENP WYTQYTPYQAEIAQGRLESLLNFQTMI DLTGLPMSNASLLDEGTA
Sbjct: 157 VPTVILRNIMENPGWYTQYTPYQAEIAQGRLESLLNFQTMITDLTGLPMSNASLLDEGTA 216
Query: 240 AAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDLKDIDYKSGDVC 299
AAEAMAMCNNIQKGKKKTFIIASNCHPQTIDIC TRADGFD+KVV SDLKD DY SGDVC
Sbjct: 217 AAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICKTRADGFDLKVVTSDLKDFDYSSGDVC 276
Query: 300 GVLVQYPGTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKPPGELGADIVVGSAQRF 359
GVLVQYPGTEGE+LDY +FIKNAHANGVKVVMA+DLLALTILKPPGELGADIVVGSAQRF
Sbjct: 277 GVLVQYPGTEGELLDYSEFIKNAHANGVKVVMASDLLALTILKPPGELGADIVVGSAQRF 336
Query: 360 GVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSN 419
GVPMGYGGPHAAFLATSQEYKRMMPGRI+GVS+DSSGKPALR+AMQTREQHIRRDKATSN
Sbjct: 337 GVPMGYGGPHAAFLATSQEYKRMMPGRIIGVSVDSSGKPALRMAMQTREQHIRRDKATSN 396
Query: 420 ICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDTVK 479
ICTAQALLANMAAM+ VYHGPEGLKTIA+RVHGLAGTFA GLKKLGTV+VQ LPFFDTVK
Sbjct: 397 ICTAQALLANMAAMFGVYHGPEGLKTIAKRVHGLAGTFASGLKKLGTVQVQDLPFFDTVK 456
Query: 480 VKCADAHAIASAAYKIEMNLRVVDSNTVTASFDETTTLEDVDKLFIVFAGGKSVPFTAAS 539
V CAD+ AIA AYK +MNLR+VD NT+T +FDETTT+EDVD LF VFA GK V FTAAS
Sbjct: 457 VTCADSKAIAEEAYKHKMNLRIVDKNTITVAFDETTTIEDVDTLFKVFALGKPVTFTAAS 516
Query: 540 LAEEVETAIPSGLTRESPYLTHPVFNKYHTEHELLRYIHLLQSKELSLCHSMIPLGSCTM 599
+A EV+ AIPSGL RE+PYLTHP+FN YHTEHELLRYI LQSK+LSLCHSMIPLGSCTM
Sbjct: 517 IAPEVQDAIPSGLVRETPYLTHPIFNMYHTEHELLRYISKLQSKDLSLCHSMIPLGSCTM 576
Query: 600 KLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFDSFSLQPNAGAA 659
KLNATTEMMPVTWP+FA+IHPFAP +QAQGYQEMF NLG+ LCTITGFDSFSLQPNAGAA
Sbjct: 577 KLNATTEMMPVTWPAFADIHPFAPTEQAQGYQEMFKNLGDLLCTITGFDSFSLQPNAGAA 636
Query: 660 GEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKGNINIEE 719
GEYAGLMVIRAYH ARGDHHRNVCIIPVSAHGTNPA+AAMCGMKI++VGTD+KGNINIEE
Sbjct: 637 GEYAGLMVIRAYHMARGDHHRNVCIIPVSAHGTNPASAAMCGMKIITVGTDSKGNINIEE 696
Query: 720 LRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSP 779
LRKAAEAN++NLS LMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSP
Sbjct: 697 LRKAAEANKENLSALMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSP 756
Query: 780 GYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPL 839
G+IGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAP+LPSHPVV TGGIPAPE+SQPL
Sbjct: 757 GWIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPYLPSHPVVPTGGIPAPEQSQPL 816
Query: 840 GTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNG 899
GTIAAAPWGSALILPISYTYIAMMGS+G+T ASKIAILNANYMAKRLE HYPILFRGVNG
Sbjct: 817 GTIAAAPWGSALILPISYTYIAMMGSQGITNASKIAILNANYMAKRLENHYPILFRGVNG 876
Query: 900 TVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKS 956
TVAHEFIVDLR LK TAGIEPEDVAKRL+DYGFHGPTMSWPVPGTLMIEPTESESK+
Sbjct: 877 TVAHEFIVDLRPLKTTAGIEPEDVAKRLIDYGFHGPTMSWPVPGTLMIEPTESESKA 933
|
Source: Flaveria pringlei Species: Flaveria pringlei Genus: Flaveria Family: Asteraceae Order: Asterales Class: N/A Phylum: Streptophyta Superkingdom: |
| >gi|3334199|sp|O49852.1|GCSP_FLATR RecName: Full=Glycine dehydrogenase [decarboxylating], mitochondrial; AltName: Full=Glycine cleavage system P protein; AltName: Full=Glycine decarboxylase; Flags: Precursor gi|2894360|emb|CAB16916.1| P-Protein precursor [Flaveria trinervia] | Back alignment and taxonomy information |
|---|
Score = 1657 bits (4290), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 817/957 (85%), Positives = 871/957 (91%), Gaps = 25/957 (2%)
Query: 1 MERARRLASRAFLKRLVNESKQLSRNHRESKSSAAAAATYTPSRYLSSLSCAPFVCS-NN 59
MERARRLA L RLV+++K H S SS+A +PSRY+SSLS P+VCS N
Sbjct: 1 MERARRLA---MLGRLVSQTK-----HNPSISSSALC---SPSRYVSSLS--PYVCSGTN 47
Query: 60 SRSDLLQSRNMSHHNVNGYGLGSQTRGISVEALKPSDTFARRHNSATPEDQAKMSELVGL 119
RSD N+NG+G SQ R ISVEALKPSDTF RRHNSATPE+Q KM+E VG
Sbjct: 48 VRSD---------RNLNGFG--SQVRTISVEALKPSDTFPRRHNSATPEEQTKMAEFVGF 96
Query: 120 DNLDSLIDATVPKSIRIDSMKFSKFDEGLTESQMIEHMQKLASMNKVYKSFIGMGYYNTH 179
NLDSLIDATVPK+IR+DSMK+SKFDEGLTESQMI HMQ LAS NK++KSFIGMGYYNT
Sbjct: 97 SNLDSLIDATVPKAIRLDSMKYSKFDEGLTESQMIAHMQDLASKNKIFKSFIGMGYYNTS 156
Query: 180 VPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTA 239
VP VILRNIMENP WYTQYTPYQAEIAQGRLESLLNFQTMI DLTGLPMSNASLLDEGTA
Sbjct: 157 VPTVILRNIMENPGWYTQYTPYQAEIAQGRLESLLNFQTMITDLTGLPMSNASLLDEGTA 216
Query: 240 AAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDLKDIDYKSGDVC 299
AAEAMAMCNNIQKGKKKTFIIASNCHPQTIDIC TRADGFD+KVV SDLKD DY SGDVC
Sbjct: 217 AAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICKTRADGFDLKVVTSDLKDFDYSSGDVC 276
Query: 300 GVLVQYPGTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKPPGELGADIVVGSAQRF 359
GVLVQYPGTEGE+LDY +FIKNAHANGVKVVMA+DLLALTILKPPGELGADIVVGSAQRF
Sbjct: 277 GVLVQYPGTEGELLDYSEFIKNAHANGVKVVMASDLLALTILKPPGELGADIVVGSAQRF 336
Query: 360 GVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSN 419
GVPMGYGGPHAAFLATSQEYKRMMPGRI+GVS+DSSGKPALR+AMQTREQHIRRDKATSN
Sbjct: 337 GVPMGYGGPHAAFLATSQEYKRMMPGRIIGVSVDSSGKPALRMAMQTREQHIRRDKATSN 396
Query: 420 ICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDTVK 479
ICTAQALLANMAAMY VYHGPEGLKTIA+RVHGLAGTFA GLKKLGTV+VQ LPFFDTVK
Sbjct: 397 ICTAQALLANMAAMYGVYHGPEGLKTIAKRVHGLAGTFAAGLKKLGTVQVQDLPFFDTVK 456
Query: 480 VKCADAHAIASAAYKIEMNLRVVDSNTVTASFDETTTLEDVDKLFIVFAGGKSVPFTAAS 539
V CAD+ AIA AYK +MNLR+VD NT+T +FDETTT+EDVD LF VFA GK V FTAAS
Sbjct: 457 VTCADSKAIAEEAYKHKMNLRIVDKNTITVAFDETTTIEDVDTLFKVFALGKPVTFTAAS 516
Query: 540 LAEEVETAIPSGLTRESPYLTHPVFNKYHTEHELLRYIHLLQSKELSLCHSMIPLGSCTM 599
+A EV+ AIPSGL RE+PYLTHP+FN YHTEHELLRYI LQSK+LSLCHSMIPLGSCTM
Sbjct: 517 IAPEVQDAIPSGLVRETPYLTHPIFNMYHTEHELLRYISKLQSKDLSLCHSMIPLGSCTM 576
Query: 600 KLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFDSFSLQPNAGAA 659
KLNATTEMMPVTWP+FA+IHPFAP +QAQGYQEMF NLG+ LCTITGFDSFSLQPNAGAA
Sbjct: 577 KLNATTEMMPVTWPAFADIHPFAPTEQAQGYQEMFKNLGDLLCTITGFDSFSLQPNAGAA 636
Query: 660 GEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKGNINIEE 719
GEYAGLMVI+AYH ARGDHHR VCIIPVSAHGTNPA+AAMCGMKI++VGTD+KGNINIEE
Sbjct: 637 GEYAGLMVIQAYHMARGDHHRKVCIIPVSAHGTNPASAAMCGMKIITVGTDSKGNINIEE 696
Query: 720 LRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSP 779
LRKAAEAN++NLS LMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSP
Sbjct: 697 LRKAAEANKENLSALMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSP 756
Query: 780 GYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPL 839
G+IGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAP+LPSHPVV TGGIPAPE+SQPL
Sbjct: 757 GWIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPYLPSHPVVPTGGIPAPEQSQPL 816
Query: 840 GTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNG 899
GTIAAAPWGSALILPISYTYIAMMGS+G+T ASKIAILNANYMAKRLE HYPILFRGVNG
Sbjct: 817 GTIAAAPWGSALILPISYTYIAMMGSQGITNASKIAILNANYMAKRLENHYPILFRGVNG 876
Query: 900 TVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKS 956
TVAHEFIVDLR LK TAGIEPEDVAKRL+DYGFHGPTMSWPVPGTLMIEPTESESK+
Sbjct: 877 TVAHEFIVDLRPLKTTAGIEPEDVAKRLIDYGFHGPTMSWPVPGTLMIEPTESESKA 933
|
Source: Flaveria trinervia Species: Flaveria trinervia Genus: Flaveria Family: Asteraceae Order: Asterales Class: N/A Phylum: Streptophyta Superkingdom: |
| >gi|3334198|sp|O49850.1|GCSP_FLAAN RecName: Full=Glycine dehydrogenase [decarboxylating], mitochondrial; AltName: Full=Glycine cleavage system P protein; AltName: Full=Glycine decarboxylase; Flags: Precursor gi|2894358|emb|CAB16911.1| P-protein [Flaveria anomala] | Back alignment and taxonomy information |
|---|
Score = 1655 bits (4286), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 819/957 (85%), Positives = 870/957 (90%), Gaps = 25/957 (2%)
Query: 1 MERARRLASRAFLKRLVNESKQLSRNHRESKSSAAAAATYTPSRYLSSLSCAPFVCS-NN 59
MERARRLA L RLV+++K H S SS A +PSRY+SSLS P+VC N
Sbjct: 1 MERARRLA---MLGRLVSQTK-----HNPSISSPALC---SPSRYVSSLS--PYVCGGTN 47
Query: 60 SRSDLLQSRNMSHHNVNGYGLGSQTRGISVEALKPSDTFARRHNSATPEDQAKMSELVGL 119
RSD N+NG+G SQ R ISVEALKPSDTF RRHNSATPE+Q KM+E VG
Sbjct: 48 VRSD---------RNLNGFG--SQVRTISVEALKPSDTFPRRHNSATPEEQTKMAEFVGF 96
Query: 120 DNLDSLIDATVPKSIRIDSMKFSKFDEGLTESQMIEHMQKLASMNKVYKSFIGMGYYNTH 179
NLDSLIDATVPKSIR+DSMK+SKFDEGLTESQMI HMQ LAS NK++KSFIGMGYYNT
Sbjct: 97 SNLDSLIDATVPKSIRLDSMKYSKFDEGLTESQMIAHMQDLASKNKIFKSFIGMGYYNTS 156
Query: 180 VPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTA 239
VP VILRNIMENP WYTQYTPYQAEIAQGRLESLLNFQTMI DLTGLPMSNASLLDEGTA
Sbjct: 157 VPTVILRNIMENPGWYTQYTPYQAEIAQGRLESLLNFQTMITDLTGLPMSNASLLDEGTA 216
Query: 240 AAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDLKDIDYKSGDVC 299
AAEAMAMCNNIQKGKKKTFIIASNCHPQTIDIC TRADGFD+KVV SDLKD DY SGDVC
Sbjct: 217 AAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICKTRADGFDLKVVTSDLKDFDYSSGDVC 276
Query: 300 GVLVQYPGTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKPPGELGADIVVGSAQRF 359
GVLVQYPGTEGE+LDY +FIKNAHANGVKVVMA+DLLALTILKPPGELGADIVVGSAQRF
Sbjct: 277 GVLVQYPGTEGELLDYSEFIKNAHANGVKVVMASDLLALTILKPPGELGADIVVGSAQRF 336
Query: 360 GVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSN 419
GVPMGYGGPHAAFLATSQEYKRMMPGRI+GVS+DSSGKPALR+AMQTREQHIRRDKATSN
Sbjct: 337 GVPMGYGGPHAAFLATSQEYKRMMPGRIIGVSVDSSGKPALRMAMQTREQHIRRDKATSN 396
Query: 420 ICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDTVK 479
ICTAQALLANMAAMY VYHGPEGLKTIA+RVHGLAGTFA GLKKLGTV+VQ LPFFDTVK
Sbjct: 397 ICTAQALLANMAAMYGVYHGPEGLKTIAKRVHGLAGTFAAGLKKLGTVQVQDLPFFDTVK 456
Query: 480 VKCADAHAIASAAYKIEMNLRVVDSNTVTASFDETTTLEDVDKLFIVFAGGKSVPFTAAS 539
V CAD+ AIA A K +MNLR+VD NT+T +FDETTT+EDVD LF VFA GK VPFTAAS
Sbjct: 457 VTCADSKAIAEEACKHKMNLRIVDKNTITVAFDETTTIEDVDTLFKVFALGKPVPFTAAS 516
Query: 540 LAEEVETAIPSGLTRESPYLTHPVFNKYHTEHELLRYIHLLQSKELSLCHSMIPLGSCTM 599
+A EV+ AIPSGL RE+PYLTHP+FN YHTEHELLRYI LQSK+LSLCHSMIPLGSCTM
Sbjct: 517 IAPEVQDAIPSGLVRETPYLTHPIFNMYHTEHELLRYISKLQSKDLSLCHSMIPLGSCTM 576
Query: 600 KLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFDSFSLQPNAGAA 659
KLNATTEMMPVTWP+FA+IHPFAP +QAQGYQEMF NLG+ LCTITGFDSFSLQPNAGAA
Sbjct: 577 KLNATTEMMPVTWPAFADIHPFAPTEQAQGYQEMFKNLGDLLCTITGFDSFSLQPNAGAA 636
Query: 660 GEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKGNINIEE 719
GEYAGLMVIRAYH ARGDHHRNVCIIPVSAHGTNPA+AAMCGMKI++VGTD+KGNINIEE
Sbjct: 637 GEYAGLMVIRAYHMARGDHHRNVCIIPVSAHGTNPASAAMCGMKIITVGTDSKGNINIEE 696
Query: 720 LRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSP 779
LRKAAEAN++NLS LMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSP
Sbjct: 697 LRKAAEANKENLSALMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSP 756
Query: 780 GYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPL 839
G+IGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAP+LPSHPVV TGGIPAPE+SQPL
Sbjct: 757 GWIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPYLPSHPVVPTGGIPAPEESQPL 816
Query: 840 GTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNG 899
GTIAAAPWGSALILPISYTYIAMMGS+G+T ASKIAILNANYMAKRLE HYPILFRGVNG
Sbjct: 817 GTIAAAPWGSALILPISYTYIAMMGSQGITNASKIAILNANYMAKRLENHYPILFRGVNG 876
Query: 900 TVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKS 956
TVAHEFIVDLR LK TAGIEPEDVAKRL+DYGFHGPTMSWPVPGTLMIEPTESESK+
Sbjct: 877 TVAHEFIVDLRPLKTTAGIEPEDVAKRLIDYGFHGPTMSWPVPGTLMIEPTESESKA 933
|
Source: Flaveria anomala Species: Flaveria anomala Genus: Flaveria Family: Asteraceae Order: Asterales Class: N/A Phylum: Streptophyta Superkingdom: |
| >gi|359476246|ref|XP_002279590.2| PREDICTED: glycine dehydrogenase [decarboxylating], mitochondrial [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1652 bits (4277), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 815/956 (85%), Positives = 882/956 (92%), Gaps = 14/956 (1%)
Query: 1 MERARRLASRAFLKRLVNESKQLSRNHRESKSSAAAAATYTPSRYLSSLSCAPFVCSNNS 60
MERARR+A+RA L+RLV+ESKQ R ++ ++++ RY+SSL
Sbjct: 1 MERARRIANRAILRRLVSESKQ-QRPCPRPQNEGLVNSSFSGWRYVSSLP---------- 49
Query: 61 RSDLLQSRNMSHHNVNGYGLGSQTRGISVEALKPSDTFARRHNSATPEDQAKMSELVGLD 120
+ +L RN+ + G+G+G QTR ISVEALKPSDTF RRHNSATPE+Q KM+E G +
Sbjct: 50 -TYVLLGRNV--MSSVGFGMGCQTRSISVEALKPSDTFPRRHNSATPEEQTKMAESCGYE 106
Query: 121 NLDSLIDATVPKSIRIDSMKFSKFDEGLTESQMIEHMQKLASMNKVYKSFIGMGYYNTHV 180
+LDSL+DATVPKSIR++S+KFSKFDEGLTESQMIEHM +LA+ NKV+KS+IGMGYYNT V
Sbjct: 107 SLDSLVDATVPKSIRLESLKFSKFDEGLTESQMIEHMMQLAAKNKVFKSYIGMGYYNTFV 166
Query: 181 PPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAA 240
PPVILRNIMENP WYTQYTPYQAEIAQGRLESLLN+QT+I+DLTGLPMSNASLLDEGTAA
Sbjct: 167 PPVILRNIMENPGWYTQYTPYQAEIAQGRLESLLNYQTLISDLTGLPMSNASLLDEGTAA 226
Query: 241 AEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDLKDIDYKSGDVCG 300
AEAMAMCNNI KGKKKTFIIASNCHPQTIDIC TRA+GFD+KVV +DLKDIDYKSGDVCG
Sbjct: 227 AEAMAMCNNIMKGKKKTFIIASNCHPQTIDICKTRAEGFDLKVVTADLKDIDYKSGDVCG 286
Query: 301 VLVQYPGTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKPPGELGADIVVGSAQRFG 360
VLVQYP TEGEVLDYG+FIKNAHANGVKVVMA+DLLALT+LKPPGE GADIVVGSAQRFG
Sbjct: 287 VLVQYPDTEGEVLDYGEFIKNAHANGVKVVMASDLLALTMLKPPGEFGADIVVGSAQRFG 346
Query: 361 VPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNI 420
VPMGYGGPHAAFLATSQEYKRMMPGRI+GVS+D+SGKPALR+AMQTREQHIRRDKATSNI
Sbjct: 347 VPMGYGGPHAAFLATSQEYKRMMPGRIIGVSVDASGKPALRMAMQTREQHIRRDKATSNI 406
Query: 421 CTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDTVKV 480
CTAQALLANMAAM+AVYHGPEGLKTIAQRVHGLAG FALGLKKLGTVEVQGLPFFDTVKV
Sbjct: 407 CTAQALLANMAAMFAVYHGPEGLKTIAQRVHGLAGVFALGLKKLGTVEVQGLPFFDTVKV 466
Query: 481 KCADAHAIASAAYKIEMNLRVVDSNTVTASFDETTTLEDVDKLFIVFAGGKSVPFTAASL 540
KCADAHAIA AA K E+NLR+VDS T+T SFDETTT+EDVDKLF VFA GK V FTAASL
Sbjct: 467 KCADAHAIADAACKSEINLRIVDSKTITVSFDETTTIEDVDKLFKVFACGKPVNFTAASL 526
Query: 541 AEEVETAIPSGLTRESPYLTHPVFNKYHTEHELLRYIHLLQSKELSLCHSMIPLGSCTMK 600
A EV+T IPSGL RESP+LTHP+FN YHTEHELLRY+ LQSK+LSLCHSMIPLGSCTMK
Sbjct: 527 APEVQTVIPSGLIRESPFLTHPIFNLYHTEHELLRYMQRLQSKDLSLCHSMIPLGSCTMK 586
Query: 601 LNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFDSFSLQPNAGAAG 660
LNATTEMMPVTWP F +IHPFAP +QAQGYQEMFNNLGE LCTITGFDSFSLQPNAGA+G
Sbjct: 587 LNATTEMMPVTWPGFTDIHPFAPTEQAQGYQEMFNNLGELLCTITGFDSFSLQPNAGASG 646
Query: 661 EYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKGNINIEEL 720
EYAGLMVIRAYHK+RGDHHR+VCIIPVSAHGTNPA+AAMCGMKIV+VGTDAKGNINIEEL
Sbjct: 647 EYAGLMVIRAYHKSRGDHHRDVCIIPVSAHGTNPASAAMCGMKIVAVGTDAKGNINIEEL 706
Query: 721 RKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPG 780
RKAAEAN++NLS LMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPG
Sbjct: 707 RKAAEANKENLSALMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPG 766
Query: 781 YIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLG 840
+IGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAP+K QPLG
Sbjct: 767 WIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPDKLQPLG 826
Query: 841 TIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGT 900
TI+AAPWGSALILPISYTYIAMMGSKGLT+ASKIAILNANYMAKRLEKHYPILFRGVNGT
Sbjct: 827 TISAAPWGSALILPISYTYIAMMGSKGLTDASKIAILNANYMAKRLEKHYPILFRGVNGT 886
Query: 901 VAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKS 956
VAHEFIVDLRG KNTAGIEPED+AKRLMDYGFHGPTMSWPVPGTLMIEPTESESK+
Sbjct: 887 VAHEFIVDLRGFKNTAGIEPEDIAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKA 942
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: N/A Phylum: Streptophyta Superkingdom: |
| >gi|356564051|ref|XP_003550270.1| PREDICTED: glycine dehydrogenase [decarboxylating], mitochondrial-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1650 bits (4274), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 807/956 (84%), Positives = 869/956 (90%), Gaps = 2/956 (0%)
Query: 1 MERARRLASRAFLKRLVNESKQLSRNHRESKSSAAAAATYTPSRYLSSLSCAPFVCSNNS 60
MERARRLA+RA L+RLV+E+KQ +N SS Y+ S S +P + S S
Sbjct: 1 MERARRLANRAILRRLVSEAKQHQKNESVLHSSTTPILLYS-SSRCMSSVSSPVLRSRGS 59
Query: 61 RSDLLQSRNMSHHNVNGYGLGSQTRGISVEALKPSDTFARRHNSATPEDQAKMSELVGLD 120
+++ L RNM+ G GS R ISVEAL+PSDTF RRHNSATPE+Q+KM+E +G +
Sbjct: 60 KTETLLGRNMNISRSVVAGAGS-ARSISVEALQPSDTFPRRHNSATPEEQSKMAESIGFE 118
Query: 121 NLDSLIDATVPKSIRIDSMKFSKFDEGLTESQMIEHMQKLASMNKVYKSFIGMGYYNTHV 180
+LDSL+DATVPKSIR+ M F KFD GLTESQMIEHM+ LAS NKV+KS+IGMGYYNTHV
Sbjct: 119 SLDSLVDATVPKSIRLKEMTFGKFDAGLTESQMIEHMKDLASKNKVFKSYIGMGYYNTHV 178
Query: 181 PPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAA 240
PPVILRNIMENPAWYTQYTPYQAEI+QGRLESLLN+QTMI DLTGLPMSNASLLDEGTAA
Sbjct: 179 PPVILRNIMENPAWYTQYTPYQAEISQGRLESLLNYQTMITDLTGLPMSNASLLDEGTAA 238
Query: 241 AEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDLKDIDYKSGDVCG 300
AEAM+MCNNIQKGKKKTFIIASNCHPQTIDIC TRADGFD+KVV +DLKDIDYKSGDVCG
Sbjct: 239 AEAMSMCNNIQKGKKKTFIIASNCHPQTIDICKTRADGFDLKVVTADLKDIDYKSGDVCG 298
Query: 301 VLVQYPGTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKPPGELGADIVVGSAQRFG 360
VLVQYPGTEGEVLDYG+F+K AHA+ VKVVMA+DLLALT+LKPPGE GADIVVGSAQRFG
Sbjct: 299 VLVQYPGTEGEVLDYGEFVKKAHAHEVKVVMASDLLALTVLKPPGEFGADIVVGSAQRFG 358
Query: 361 VPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNI 420
VPMGYGGPHAAFLATSQEYKRMMPGRI+GVS+DSSGK ALR+AMQTREQHIRRDKATSNI
Sbjct: 359 VPMGYGGPHAAFLATSQEYKRMMPGRIIGVSVDSSGKTALRMAMQTREQHIRRDKATSNI 418
Query: 421 CTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDTVKV 480
CTAQALLANMAAMYAVYHGPEGLK IA RVHGLAG FALGLKKLGTVEVQ LPFFDTVKV
Sbjct: 419 CTAQALLANMAAMYAVYHGPEGLKNIAHRVHGLAGAFALGLKKLGTVEVQDLPFFDTVKV 478
Query: 481 KCADAHAIASAAYKIEMNLRVVDSNTVTASFDETTTLEDVDKLFIVFAGGKSVPFTAASL 540
K ++AHAIA AA K +NLRVVD NT+T +FDETTTLEDVD LF VFAGGK VPFTAASL
Sbjct: 479 KTSNAHAIADAALKSGINLRVVDGNTITVAFDETTTLEDVDNLFKVFAGGKPVPFTAASL 538
Query: 541 AEEVETAIPSGLTRESPYLTHPVFNKYHTEHELLRYIHLLQSKELSLCHSMIPLGSCTMK 600
A EV++AIPSGL R+SPYLTH +FN Y TEHELLRY++ LQSK+LSLCHSMIPLGSCTMK
Sbjct: 539 APEVQSAIPSGLVRKSPYLTHSIFNMYQTEHELLRYLYKLQSKDLSLCHSMIPLGSCTMK 598
Query: 601 LNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFDSFSLQPNAGAAG 660
LNATTEMMPVTWPSF +IHPFAP DQAQGYQEMFNNLGE LCTITGFDSFSLQPNAGAAG
Sbjct: 599 LNATTEMMPVTWPSFTDIHPFAPVDQAQGYQEMFNNLGELLCTITGFDSFSLQPNAGAAG 658
Query: 661 EYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKGNINIEEL 720
EYAGLMVIRAYH ARGDHHRNVCIIPVSAHGTNPA+AAMCGMKIVSVGTDAKGNINIEEL
Sbjct: 659 EYAGLMVIRAYHLARGDHHRNVCIIPVSAHGTNPASAAMCGMKIVSVGTDAKGNINIEEL 718
Query: 721 RKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPG 780
RKAAE ++DNLS LMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPG
Sbjct: 719 RKAAETHKDNLSALMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPG 778
Query: 781 YIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLG 840
+IGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPV++TGGIPAP+K QPLG
Sbjct: 779 WIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVIATGGIPAPDKPQPLG 838
Query: 841 TIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGT 900
TIAAAPWGSALILPISYTYIAMMGSKGLT+ASKIAILNANYMAKRLE +YP+LFRGVNGT
Sbjct: 839 TIAAAPWGSALILPISYTYIAMMGSKGLTDASKIAILNANYMAKRLENYYPVLFRGVNGT 898
Query: 901 VAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKS 956
VAHEFI+DLRG KNTAGIEPEDVAKRLMDYGFH PTMSWPVPGTLMIEPTESESK+
Sbjct: 899 VAHEFIIDLRGFKNTAGIEPEDVAKRLMDYGFHAPTMSWPVPGTLMIEPTESESKA 954
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: N/A Phylum: Streptophyta Superkingdom: |
| >gi|3334200|sp|O49954.1|GCSP_SOLTU RecName: Full=Glycine dehydrogenase [decarboxylating], mitochondrial; AltName: Full=Glycine cleavage system P protein; AltName: Full=Glycine decarboxylase; Flags: Precursor gi|2894362|emb|CAB16918.1| P-Protein precursor [Solanum tuberosum] | Back alignment and taxonomy information |
|---|
Score = 1649 bits (4270), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 801/956 (83%), Positives = 867/956 (90%), Gaps = 22/956 (2%)
Query: 1 MERARRLASRAFLKRLVNESKQLSRNHRESKSSAAAAATYTPSRYLSSLSCAPFVCSNNS 60
MERAR+LA+RA LKRLV++SKQ N S S Y PSRY+SSLS F NN+
Sbjct: 1 MERARKLANRAILKRLVSQSKQSRSNEIPSSS------LYRPSRYVSSLSPYTFQARNNA 54
Query: 61 RSDLLQSRNMSHHNVNGYGLGSQTRGISVEALKPSDTFARRHNSATPEDQAKMSELVGLD 120
+S Q Q R ISVEALKPSDTF RRHNSATPE+Q KM+E G
Sbjct: 55 KSFNTQ----------------QARSISVEALKPSDTFPRRHNSATPEEQTKMAEFCGFQ 98
Query: 121 NLDSLIDATVPKSIRIDSMKFSKFDEGLTESQMIEHMQKLASMNKVYKSFIGMGYYNTHV 180
+LD+LIDATVP+SIR +SMK KFD GLTESQMIEHMQ LAS NKV+KS+IGMGYYNT+V
Sbjct: 99 SLDALIDATVPQSIRSESMKLPKFDSGLTESQMIEHMQNLASKNKVFKSYIGMGYYNTYV 158
Query: 181 PPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAA 240
PPVILRN++ENPAWYTQYTPYQAEI+QGRLESLLN+QTMI DLTGLPMSNASLLDEGTAA
Sbjct: 159 PPVILRNLLENPAWYTQYTPYQAEISQGRLESLLNYQTMITDLTGLPMSNASLLDEGTAA 218
Query: 241 AEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDLKDIDYKSGDVCG 300
AEAMAMCNNI KGKKKTF+IASNCHPQTIDIC TRADGFD+KVV DLKDIDYKSGDVCG
Sbjct: 219 AEAMAMCNNILKGKKKTFLIASNCHPQTIDICKTRADGFDLKVVTVDLKDIDYKSGDVCG 278
Query: 301 VLVQYPGTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKPPGELGADIVVGSAQRFG 360
VLVQYPGTEGE+LDYG+FIKNAHA+GVKVVMA+DLLALT+LKPPGELGADIVVGSAQRFG
Sbjct: 279 VLVQYPGTEGEILDYGEFIKNAHAHGVKVVMASDLLALTMLKPPGELGADIVVGSAQRFG 338
Query: 361 VPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNI 420
VPMGYGGPHAAFLATSQEYKRMMPGRI+G+S+DS+GKPALR+AMQTREQHIRRDKATSNI
Sbjct: 339 VPMGYGGPHAAFLATSQEYKRMMPGRIIGLSVDSTGKPALRMAMQTREQHIRRDKATSNI 398
Query: 421 CTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDTVKV 480
CTAQALLANMAAMYAVYHGPEGLKTI QRVHGLAGTF+ GLKKLGTVEVQ LPFFDTVKV
Sbjct: 399 CTAQALLANMAAMYAVYHGPEGLKTIGQRVHGLAGTFSAGLKKLGTVEVQDLPFFDTVKV 458
Query: 481 KCADAHAIASAAYKIEMNLRVVDSNTVTASFDETTTLEDVDKLFIVFAGGKSVPFTAASL 540
KC+DA AIA A K ++NLR+VD+NT+T SFDETTTLEDVD LF VFA GK VPFTA S+
Sbjct: 459 KCSDAKAIADVANKNDINLRIVDNNTITVSFDETTTLEDVDDLFKVFALGKPVPFTAQSI 518
Query: 541 AEEVETAIPSGLTRESPYLTHPVFNKYHTEHELLRYIHLLQSKELSLCHSMIPLGSCTMK 600
A+EVE IPSGLTRE+P+LTH +FN YHTEHELLRY+H LQSK+LSLCHSMIPLGSCTMK
Sbjct: 519 AQEVENLIPSGLTRETPFLTHQIFNSYHTEHELLRYLHKLQSKDLSLCHSMIPLGSCTMK 578
Query: 601 LNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFDSFSLQPNAGAAG 660
LNATTEMMPVTWPSFANIHPFAP +QA GYQEMF++LG LCTITGFDSFSLQPNAGAAG
Sbjct: 579 LNATTEMMPVTWPSFANIHPFAPTEQAAGYQEMFDDLGALLCTITGFDSFSLQPNAGAAG 638
Query: 661 EYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKGNINIEEL 720
EYAGLMVIRAYH +RGDHHRNVCIIPVSAHGTNPA+AAMCGMKIV+VGTDAKGNINIEEL
Sbjct: 639 EYAGLMVIRAYHMSRGDHHRNVCIIPVSAHGTNPASAAMCGMKIVAVGTDAKGNINIEEL 698
Query: 721 RKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPG 780
RKAAEAN+DNL+ LMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPG
Sbjct: 699 RKAAEANKDNLAALMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPG 758
Query: 781 YIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLG 840
+IGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAP+LPSHPVV TGGIP+P+KS+PLG
Sbjct: 759 FIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPYLPSHPVVPTGGIPSPDKSEPLG 818
Query: 841 TIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGT 900
I+AAPWGSALILPISYTYIAMMGSKGLT+ASKIAIL+ANYMAKRLEKHYP+LFRGVNGT
Sbjct: 819 AISAAPWGSALILPISYTYIAMMGSKGLTDASKIAILSANYMAKRLEKHYPVLFRGVNGT 878
Query: 901 VAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKS 956
AHEFI+DLRG KNTAGIEPEDVAKRL+DYGFHGPTMSWPVPGTLMIEPTESESK+
Sbjct: 879 CAHEFIIDLRGFKNTAGIEPEDVAKRLIDYGFHGPTMSWPVPGTLMIEPTESESKA 934
|
Source: Solanum tuberosum Species: Solanum tuberosum Genus: Solanum Family: Solanaceae Order: Solanales Class: N/A Phylum: Streptophyta Superkingdom: |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 985 | ||||||
| TAIR|locus:2057464 | 1044 | GLDP2 "glycine decarboxylase P | 0.955 | 0.901 | 0.818 | 0.0 | |
| UNIPROTKB|P26969 | 1057 | GDCSP "Glycine dehydrogenase [ | 0.966 | 0.900 | 0.821 | 0.0 | |
| TAIR|locus:2123777 | 1037 | GLDP1 "glycine decarboxylase P | 0.948 | 0.900 | 0.813 | 0.0 | |
| MGI|MGI:1341155 | 1025 | Gldc "glycine decarboxylase" [ | 0.896 | 0.861 | 0.550 | 6.5e-264 | |
| DICTYBASE|DDB_G0287255 | 994 | gcvP "glycine dehydrogenase (d | 0.864 | 0.857 | 0.568 | 3.2e-262 | |
| UNIPROTKB|E2R9Z7 | 1023 | GLDC "Uncharacterized protein" | 0.872 | 0.839 | 0.548 | 4.9e-259 | |
| UNIPROTKB|E1BJQ1 | 1020 | GLDC "Uncharacterized protein" | 0.873 | 0.843 | 0.548 | 6.2e-259 | |
| UNIPROTKB|P23378 | 1020 | GLDC "Glycine dehydrogenase [d | 0.886 | 0.855 | 0.540 | 8.2e-257 | |
| TIGR_CMR|CPS_1276 | 965 | CPS_1276 "glycine dehydrogenas | 0.876 | 0.894 | 0.551 | 8.2e-257 | |
| TIGR_CMR|CPS_3846 | 956 | CPS_3846 "glycine dehydrogenas | 0.850 | 0.876 | 0.555 | 3.6e-256 |
| TAIR|locus:2057464 GLDP2 "glycine decarboxylase P-protein 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 4072 (1438.5 bits), Expect = 0., P = 0.
Identities = 784/958 (81%), Positives = 847/958 (88%)
Query: 1 MERARRLASRAFLKRLVNESKQLSRNHRESKXXXXXXXTYTPSRYLSSLSCAPFVCSNNS 60
MERARRLA R +KRLVNE+K+ HR + T TPSRY+SS+S F+ +
Sbjct: 1 MERARRLAYRGIVKRLVNETKR----HRNGESSLLPTTTVTPSRYVSSVSS--FL---HR 51
Query: 61 RSDLLQSR-NMSHHNVNGYGLGSQTRGISVEALKPSDTFARRHNSATPEDQAKMSELVGL 119
R D+ S S N + QTR ISV+ALKPSDTF RRHNSATP++QA+M+ G
Sbjct: 52 RRDVSGSAFTTSGRNQH------QTRSISVDALKPSDTFPRRHNSATPDEQAQMANYCGF 105
Query: 120 DNLDSLIDATVPKSIRIDSMKFSK-FDEGLTESQMIEHMQKLASMNKVYKSFIGMGYYNT 178
DNL++LID+TVPKSIR+DSMKFS FDEGLTESQMIEHM LAS NKV+KSFIGMGYYNT
Sbjct: 106 DNLNTLIDSTVPKSIRLDSMKFSGIFDEGLTESQMIEHMSDLASKNKVFKSFIGMGYYNT 165
Query: 179 HVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMSNASLLDEGT 238
HVPPVILRNIMENPAWYTQYTPYQAEI+QGRLESLLN+QT+I DLTGLPMSNASLLDEGT
Sbjct: 166 HVPPVILRNIMENPAWYTQYTPYQAEISQGRLESLLNYQTVITDLTGLPMSNASLLDEGT 225
Query: 239 AAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDLKDIDYKSGDV 298
AAAEAMAMCNNI KGKKKTF+IASNCHPQTID+C TRADGFD+KVV D+KD+DY SGDV
Sbjct: 226 AAAEAMAMCNNILKGKKKTFVIASNCHPQTIDVCKTRADGFDLKVVTVDIKDVDYSSGDV 285
Query: 299 CGVLVQYPGTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKPPGELGADIVVGSAQR 358
CGVLVQYPGTEGEVLDYG+F+KNAHANGVKVVMATDLLALT+LKPPGE GADIVVGS QR
Sbjct: 286 CGVLVQYPGTEGEVLDYGEFVKNAHANGVKVVMATDLLALTMLKPPGEFGADIVVGSGQR 345
Query: 359 FGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATS 418
FGVPMGYGGPHAAFLATSQEYKRMMPGRI+GVS+DSSGK ALR+AMQTREQHIRRDKATS
Sbjct: 346 FGVPMGYGGPHAAFLATSQEYKRMMPGRIIGVSVDSSGKQALRMAMQTREQHIRRDKATS 405
Query: 419 NICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDTV 478
NICTAQALLANM AMYAVYHGPEGLK+IAQRVHGLAG FALGLKKLGT +VQ LPFFDTV
Sbjct: 406 NICTAQALLANMTAMYAVYHGPEGLKSIAQRVHGLAGVFALGLKKLGTAQVQDLPFFDTV 465
Query: 479 KVKCADAHAIASAAYKIEMNLRVVDSNTVTASFDETTTLEDVDKLFIVFAGGKSVPFTAA 538
KV C+DA AI A K E+NLR+VDSNT+T +FDETTTL+DVDKLF VFA GK V FTA
Sbjct: 466 KVTCSDATAIFDVAAKKEINLRLVDSNTITVAFDETTTLDDVDKLFEVFASGKPVQFTAE 525
Query: 539 SLAEEVETAIPSGLTRESPYLTHPVFNKYHTEHELLRYIHLLQSKELSLCHSMIPLGSCT 598
SLA E AIPS LTRESPYLTHP+FN YHTEHELLRYIH LQ+K+LSLCHSMIPLGSCT
Sbjct: 526 SLAPEFNNAIPSSLTRESPYLTHPIFNMYHTEHELLRYIHKLQNKDLSLCHSMIPLGSCT 585
Query: 599 MKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFDSFSLQPNAGA 658
MKLNATTEMMPVTWPSF N+HPFAP +QAQGYQEMF NLGE LCTITGFDSFSLQPNAGA
Sbjct: 586 MKLNATTEMMPVTWPSFTNMHPFAPVEQAQGYQEMFTNLGELLCTITGFDSFSLQPNAGA 645
Query: 659 AGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKGNINIE 718
AGEYAGLMVIRAYH +RGDHHRNVCIIPVSAHGTNPA+AAMCGMKIV+VGTDAKGNINIE
Sbjct: 646 AGEYAGLMVIRAYHMSRGDHHRNVCIIPVSAHGTNPASAAMCGMKIVAVGTDAKGNINIE 705
Query: 719 ELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTS 778
ELR AAEAN+DNL+ LMVTYPSTHGVYEEGIDEIC IIH+NGGQVYMDGANMNAQVGLTS
Sbjct: 706 ELRNAAEANKDNLAALMVTYPSTHGVYEEGIDEICNIIHENGGQVYMDGANMNAQVGLTS 765
Query: 779 PGYIGADVCHLNLHKTFCIXXXXXXXXXXXXXVKKHLAPFLPSHPVVSTGGIPAPEKSQP 838
PG+IGADVCHLNLHKTFCI VK+HLAPFLPSHPV+ TGGIP PE++ P
Sbjct: 766 PGFIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKQHLAPFLPSHPVIPTGGIPEPEQTSP 825
Query: 839 LGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVN 898
LGTI+AAPWGSALILPISYTYIAMMGS GLT+ASKIAILNANYMAKRLE HYP+LFRGVN
Sbjct: 826 LGTISAAPWGSALILPISYTYIAMMGSGGLTDASKIAILNANYMAKRLESHYPVLFRGVN 885
Query: 899 GTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKS 956
GTVAHEFI+DLRG KNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESK+
Sbjct: 886 GTVAHEFIIDLRGFKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKA 943
|
|
| UNIPROTKB|P26969 GDCSP "Glycine dehydrogenase [decarboxylating], mitochondrial" [Pisum sativum (taxid:3888)] | Back alignment and assigned GO terms |
|---|
Score = 4069 (1437.4 bits), Expect = 0., P = 0.
Identities = 788/959 (82%), Positives = 850/959 (88%)
Query: 1 MERARRLASRAFLKRLVNESKQLSRNHRESKXXXX---XXXTYTPSRYLSSLSCAPFVCS 57
MERARRLA+RA LKRL++E+KQ + S + + SRY+SS+S + +
Sbjct: 1 MERARRLANRATLKRLLSEAKQNRKTESTSTTTTTPLPFSLSGSSSRYVSSVSNS-ILRG 59
Query: 58 NNSRSDLLQSRNMSHHNVNGYGLGSQTRGISVEALKPSDTFARRHNSATPEDQAKMSELV 117
S+ D SR + G G SQ+R ISVEALKPSDTF RRHNSATP++Q KM+E V
Sbjct: 60 RGSKPDNNVSRRVG--GFLGVGYPSQSRSISVEALKPSDTFPRRHNSATPDEQTKMAESV 117
Query: 118 GLDNLDSLIDATVPKSIRIDSMKFSKFDEGLTESQMIEHMQKLASMNKVYKSFIGMGYYN 177
G D LDSL+DATVPKSIR+ MKF+KFD GLTE QMIEHM+ LAS NKV+KSFIGMGYYN
Sbjct: 118 GFDTLDSLVDATVPKSIRLKEMKFNKFDGGLTEGQMIEHMKDLASKNKVFKSFIGMGYYN 177
Query: 178 THVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMSNASLLDEG 237
THVPPVILRNIMENPAWYTQYTPYQAEI+QGRLESLLNFQTMI DLTGLPMSNASLLDEG
Sbjct: 178 THVPPVILRNIMENPAWYTQYTPYQAEISQGRLESLLNFQTMITDLTGLPMSNASLLDEG 237
Query: 238 TAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDLKDIDYKSGD 297
TAAAEAM+MCNNIQKGKKKTFIIASNCHPQTIDIC TRADGF++KVVV DLKDIDYKSGD
Sbjct: 238 TAAAEAMSMCNNIQKGKKKTFIIASNCHPQTIDICQTRADGFELKVVVKDLKDIDYKSGD 297
Query: 298 VCGVLVQYPGTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKPPGELGADIVVGSAQ 357
VCGVLVQYPGTEGEVLDYG+FIK AHAN VKVVMA+DLLALT+LKPPGE GADIVVGSAQ
Sbjct: 298 VCGVLVQYPGTEGEVLDYGEFIKKAHANEVKVVMASDLLALTVLKPPGEFGADIVVGSAQ 357
Query: 358 RFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKAT 417
RFGVPMGYGGPHAAFLATSQEYKRMMPGRI+GVS+DSSGK ALR+AMQTREQHIRRDKAT
Sbjct: 358 RFGVPMGYGGPHAAFLATSQEYKRMMPGRIIGVSVDSSGKQALRMAMQTREQHIRRDKAT 417
Query: 418 SNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDT 477
SNICTAQALLANMAAMYAVYHGPEGLK IAQRVHGLAG FALGLKKLG +EVQ L FFDT
Sbjct: 418 SNICTAQALLANMAAMYAVYHGPEGLKAIAQRVHGLAGVFALGLKKLG-LEVQDLGFFDT 476
Query: 478 VKVKCADAHAIASAAYKIEMNLRVVDSNTVTASFDETTTLEDVDKLFIVFAGGKSVPFTA 537
VKVK ++A AIA AA K E+NLRVVD NT+TA+FDETTTLEDVDKLF VFAGGK V FTA
Sbjct: 477 VKVKTSNAKAIADAAIKSEINLRVVDGNTITAAFDETTTLEDVDKLFKVFAGGKPVSFTA 536
Query: 538 ASLAEEVETAIPSGLTRESPYLTHPVFNKYHTEHELLRYIHLLQSKELSLCHSMIPLGSC 597
ASLA E + AIPSGL RESPYLTHP+FN Y TEHELLRYIH LQSK+LSLCHSMIPLGSC
Sbjct: 537 ASLAPEFQNAIPSGLVRESPYLTHPIFNTYQTEHELLRYIHRLQSKDLSLCHSMIPLGSC 596
Query: 598 TMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFDSFSLQPNAG 657
TMKLNATTEMMPVTWPSF ++HPFAP +QAQGYQEMFNNLG+ LCTITGFDSFSLQPNAG
Sbjct: 597 TMKLNATTEMMPVTWPSFTDLHPFAPTEQAQGYQEMFNNLGDLLCTITGFDSFSLQPNAG 656
Query: 658 AAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKGNINI 717
AAGEYAGLMVIRAYH +RGDHHRNVCIIP SAHGTNPA+AAM GMKIV++GTDAKGNINI
Sbjct: 657 AAGEYAGLMVIRAYHLSRGDHHRNVCIIPASAHGTNPASAAMVGMKIVTIGTDAKGNINI 716
Query: 718 EELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLT 777
EEL+KAAE ++DNLS MVTYPSTHGVYEEGID+ICKIIHDNGGQVYMDGANMNAQVGLT
Sbjct: 717 EELKKAAEKHKDNLSAFMVTYPSTHGVYEEGIDDICKIIHDNGGQVYMDGANMNAQVGLT 776
Query: 778 SPGYIGADVCHLNLHKTFCIXXXXXXXXXXXXXVKKHLAPFLPSHPVVSTGGIPAPEKSQ 837
SPG+IGADVCHLNLHKTFCI VKKHLAPFLPSHPVV TGGIPAPE Q
Sbjct: 777 SPGWIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVPTGGIPAPENPQ 836
Query: 838 PLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGV 897
PLG+I+AAPWGSALILPISYTYIAMMGS+GLT+ASKIAILNANYMAKRLE +YP+LFRGV
Sbjct: 837 PLGSISAAPWGSALILPISYTYIAMMGSQGLTDASKIAILNANYMAKRLESYYPVLFRGV 896
Query: 898 NGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKS 956
NGTVAHEFI+DLRG KNTAGIEPEDVAKRLMDYGFHGPTMSWPV GTLMIEPTESESK+
Sbjct: 897 NGTVAHEFIIDLRGFKNTAGIEPEDVAKRLMDYGFHGPTMSWPVAGTLMIEPTESESKA 955
|
|
| TAIR|locus:2123777 GLDP1 "glycine decarboxylase P-protein 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 4047 (1429.7 bits), Expect = 0., Sum P(2) = 0.
Identities = 772/949 (81%), Positives = 840/949 (88%)
Query: 8 ASRAFLKRLVNESKQLSRNHRESKXXXXXXXTYTPSRYLSSLSCAPFVCSNNSRSDLLQS 67
A R + +V ++ HR ++ + P+RY+SSLS PF+ +
Sbjct: 4 ARRLAYRGIVKRLVNDTKRHRNAETPHLV--PHAPARYVSSLS--PFIST---------P 50
Query: 68 RNMSHHNVNGYGLGSQTRGISVEALKPSDTFARRHNSATPEDQAKMSELVGLDNLDSLID 127
R+++H +G QTR ISV+A+KPSDTF RRHNSATP++Q M++ G D++DSLID
Sbjct: 51 RSVNH--TAAFGRHQQTRSISVDAVKPSDTFPRRHNSATPDEQTHMAKFCGFDHIDSLID 108
Query: 128 ATVPKSIRIDSMKFSKFDEGLTESQMIEHMQKLASMNKVYKSFIGMGYYNTHVPPVILRN 187
ATVPKSIR+DSMKFSKFD GLTESQMI+HM LAS NKV+KSFIGMGYYNTHVP VILRN
Sbjct: 109 ATVPKSIRLDSMKFSKFDAGLTESQMIQHMVDLASKNKVFKSFIGMGYYNTHVPTVILRN 168
Query: 188 IMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMC 247
IMENPAWYTQYTPYQAEI+QGRLESLLNFQT+I DLTGLPMSNASLLDEGTAAAEAMAMC
Sbjct: 169 IMENPAWYTQYTPYQAEISQGRLESLLNFQTVITDLTGLPMSNASLLDEGTAAAEAMAMC 228
Query: 248 NNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDLKDIDYKSGDVCGVLVQYPG 307
NNI KGKKKTF+IASNCHPQTID+C TRADGFD+KVV SDLKDIDY SGDVCGVLVQYPG
Sbjct: 229 NNILKGKKKTFVIASNCHPQTIDVCKTRADGFDLKVVTSDLKDIDYSSGDVCGVLVQYPG 288
Query: 308 TEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKPPGELGADIVVGSAQRFGVPMGYGG 367
TEGEVLDY +F+KNAHANGVKVVMATDLLALT+LKPPGE GADIVVGSAQRFGVPMGYGG
Sbjct: 289 TEGEVLDYAEFVKNAHANGVKVVMATDLLALTVLKPPGEFGADIVVGSAQRFGVPMGYGG 348
Query: 368 PHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALL 427
PHAAFLATSQEYKRMMPGRI+G+S+DSSGK ALR+AMQTREQHIRRDKATSNICTAQALL
Sbjct: 349 PHAAFLATSQEYKRMMPGRIIGISVDSSGKQALRMAMQTREQHIRRDKATSNICTAQALL 408
Query: 428 ANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDTVKVKCADAHA 487
ANMAAMYAVYHGP GLK+IAQRVHGLAG F+LGL KLG EVQ LPFFDTVK+KC+DAHA
Sbjct: 409 ANMAAMYAVYHGPAGLKSIAQRVHGLAGIFSLGLNKLGVAEVQELPFFDTVKIKCSDAHA 468
Query: 488 IASAAYKIEMNLRVVDSNTVTASFDETTTLEDVDKLFIVFAGGKSVPFTAASLAEEVETA 547
IA AA K E+NLRVVDS T+TASFDETTTL+DVDKLF VFA GK VPFTA SLA EV+ +
Sbjct: 469 IADAASKSEINLRVVDSTTITASFDETTTLDDVDKLFKVFASGKPVPFTAESLAPEVQNS 528
Query: 548 IPSGLTRESPYLTHPVFNKYHTEHELLRYIHLLQSKELSLCHSMIPLGSCTMKLNATTEM 607
IPS LTRESPYLTHP+FN YHTEHELLRYIH LQSK+LSLCHSMIPLGSCTMKLNATTEM
Sbjct: 529 IPSSLTRESPYLTHPIFNMYHTEHELLRYIHKLQSKDLSLCHSMIPLGSCTMKLNATTEM 588
Query: 608 MPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMV 667
MPVTWPSF +IHPFAP +QAQGYQEMF NLG+ LCTITGFDSFSLQPNAGAAGEYAGLMV
Sbjct: 589 MPVTWPSFTDIHPFAPVEQAQGYQEMFENLGDLLCTITGFDSFSLQPNAGAAGEYAGLMV 648
Query: 668 IRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKGNINIEELRKAAEAN 727
IRAYH +RGDHHRNVCIIPVSAHGTNPA+AAMCGMKI++VGTDAKGNINIEE+RKAAEAN
Sbjct: 649 IRAYHMSRGDHHRNVCIIPVSAHGTNPASAAMCGMKIITVGTDAKGNINIEEVRKAAEAN 708
Query: 728 RDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIGADVC 787
+DNL+ LMVTYPSTHGVYEEGIDEIC IIH+NGGQVYMDGANMNAQVGLTSPG+IGADVC
Sbjct: 709 KDNLAALMVTYPSTHGVYEEGIDEICNIIHENGGQVYMDGANMNAQVGLTSPGFIGADVC 768
Query: 788 HLNLHKTFCIXXXXXXXXXXXXXVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPW 847
HLNLHKTFCI VK HLAPFLPSHPV+ TGGIP PEK+ PLG I+AAPW
Sbjct: 769 HLNLHKTFCIPHGGGGPGMGPIGVKNHLAPFLPSHPVIPTGGIPQPEKTAPLGAISAAPW 828
Query: 848 GSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIV 907
GSALILPISYTYIAMMGS GLT+ASKIAILNANYMAKRLEKHYP+LFRGVNGTVAHEFI+
Sbjct: 829 GSALILPISYTYIAMMGSGGLTDASKIAILNANYMAKRLEKHYPVLFRGVNGTVAHEFII 888
Query: 908 DLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKS 956
DLRG KNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESK+
Sbjct: 889 DLRGFKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKA 937
|
|
| MGI|MGI:1341155 Gldc "glycine decarboxylase" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 2539 (898.8 bits), Expect = 6.5e-264, P = 6.5e-264
Identities = 493/895 (55%), Positives = 634/895 (70%)
Query: 66 QSRNMSHHNVNGYGLGSQTRGIS--VEALKPS-DTFARRHNSATPEDQAKMSELVGLDNL 122
+SR+ S G G G S +E L P D F+RRH +D+ +M + +GL ++
Sbjct: 33 RSRDSSGGGGGGGGGDRGAAGASRLLERLLPRHDDFSRRHIGPGDKDRREMLQALGLASI 92
Query: 123 DSLIDATVPKSIRIDSMKFSKFDEGLTESQMIEHMQKLASMNKVYKSFIGMGYYNTHVPP 182
D LI+ TVP SIR+ + K ++ + E++++E + +AS N++++S+IGMGYYN VP
Sbjct: 93 DELIEKTVPASIRLK--RPLKMEDPICENEILETLHAIASKNQIWRSYIGMGYYNCSVPQ 150
Query: 183 VILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAE 242
ILRN++EN W TQYTPYQ E++QGRLESLLN+QTM++D+TGL M+NASLLDE TAAAE
Sbjct: 151 TILRNLLENSGWVTQYTPYQPEVSQGRLESLLNYQTMVSDITGLDMANASLLDEATAAAE 210
Query: 243 AMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDLKDIDYKSGDVCGVL 302
AM +C+ + K+K F + CHPQTI + TRA + V + ++D+ DVCGVL
Sbjct: 211 AMQLCH--RHNKRKKFFVDPRCHPQTIAVVQTRAKYRGVLVELKLPHEMDFSGKDVCGVL 268
Query: 303 VQYPGTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKPPGELGADIVVGSAQRFGVP 362
QYP TEG+V D+ + + AH G ATDLLAL IL+PPGE G DI +G++QRFGVP
Sbjct: 269 FQYPDTEGKVEDFTELVDRAHQTGSLTCCATDLLALCILRPPGEFGVDIALGNSQRFGVP 328
Query: 363 MGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICT 422
+GYGGPHAAF A + RMMPGR+VGV+ D++GK R+A+QTREQHIRRDKATSNICT
Sbjct: 329 LGYGGPHAAFFAVKENLVRMMPGRMVGVTRDATGKEVYRLALQTREQHIRRDKATSNICT 388
Query: 423 AQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDTVKVKC 482
AQALLANMAAM+A+YHG +GLK IA+RVH + GLK+ G ++Q FFDT+KV+C
Sbjct: 389 AQALLANMAAMFAIYHGSQGLKHIAKRVHNATLILSEGLKRAGH-QLQHDLFFDTLKVQC 447
Query: 483 A-DAHAIASAAYKIEMNLRVVDSNTVTASFDETTTLEDVDKLFIVFAGGKSVPFTAASLA 541
+ A + ++N R+ D T+ S DET T +D+D L +F S A +
Sbjct: 448 GCSVKEVLGRAAQRQINFRLFDDGTLGISLDETVTEKDLDDLLWIFGCESSAELVAEGMG 507
Query: 542 EEVETAIPSGLTRESPYLTHPVFNKYHTEHELLRYIHLLQSKELSLCHSMIPLGSCTMKL 601
EE + S R SP+LTH VFN YH+E L+RY+ L++K++SL HSMIPLGSCTMKL
Sbjct: 508 EERRGLLGSSFKRTSPFLTHQVFNSYHSETNLVRYMKKLENKDISLVHSMIPLGSCTMKL 567
Query: 602 NATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFDSFSLQPNAGAAGE 661
N+++E+ P+TW FANIHPF P DQAQGYQ++F L + LC ITG+D S QPN+GA GE
Sbjct: 568 NSSSELAPITWREFANIHPFVPLDQAQGYQQLFQGLEKDLCEITGYDRVSFQPNSGAQGE 627
Query: 662 YAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKGNINIEELR 721
YAGL IRAY +G+ HR VC+IP SAHGTNPA+A M GMKI V D GNI++ L+
Sbjct: 628 YAGLATIRAYLDQKGERHRTVCLIPKSAHGTNPASAHMAGMKIQPVEVDRYGNIDVAHLK 687
Query: 722 KAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGY 781
+ +++NL+ +M+TYPST+GV+EE I ++C +IH +GGQVY+DGANMNAQVG+ PG
Sbjct: 688 AMVDQHKENLAAIMITYPSTNGVFEENIGDVCALIHQHGGQVYLDGANMNAQVGICRPGD 747
Query: 782 IGADVCHLNLHKTFCIXXXXXXXXXXXXXVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGT 841
G+DV HLNLHKTFCI VKKHL+PFLPSHPV+S I E + P+GT
Sbjct: 748 FGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKKHLSPFLPSHPVIS---IKPTEGTWPVGT 804
Query: 842 IAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTV 901
++AAPWGS+ ILPIS+ YI MMG KGL EA++IAILNANYMAKRLEKHY +LFRG G V
Sbjct: 805 VSAAPWGSSSILPISWAYIKMMGGKGLKEATEIAILNANYMAKRLEKHYRVLFRGARGYV 864
Query: 902 AHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKS 956
AHEFI+D R K +A +E DVAKRL DYGFH PTMSWPV GTLMIEPTESE K+
Sbjct: 865 AHEFILDTRPFKKSANVEAVDVAKRLQDYGFHAPTMSWPVAGTLMIEPTESEDKA 919
|
|
| DICTYBASE|DDB_G0287255 gcvP "glycine dehydrogenase (decarboxylating)" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 2523 (893.2 bits), Expect = 3.2e-262, P = 3.2e-262
Identities = 498/876 (56%), Positives = 622/876 (71%)
Query: 96 DTFARRHNSATPEDQAKMSELVGL--------DNLDSLIDATVPKSIRIDSMKFSKFDEG 147
DTF +RH + +M + + ++L+ LI+ T+PK IR++ + ++
Sbjct: 32 DTFPKRHIGPNENEINEMLKSINTSKLSKKNPNSLEQLIEYTIPKDIRLNRELNIEENKV 91
Query: 148 LTESQMIEHMQKLASMNKVYKSFIGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQ 207
+ E+Q+++ ++K+A NKVY+SFIGMGYY T P VI RNI+ENP WYT YTPYQAEI+Q
Sbjct: 92 IGENQLLKDLKKIAEKNKVYRSFIGMGYYGTITPHVIQRNILENPGWYTPYTPYQAEISQ 151
Query: 208 GRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKK-TFIIASNCHP 266
GRLESLLNFQTM+++ TGLPMSNASLLDE TAAAEAM MC NI K K F++ CHP
Sbjct: 152 GRLESLLNFQTMVSEFTGLPMSNASLLDEATAAAEAMQMCVNISKSKGPFAFLVDKYCHP 211
Query: 267 QTIDICITRADGFDIKVVVSDLKDIDYKSGDVCGVLVQYPGTEGEVLDYGDFIKNAHANG 326
QTID TRA+ I++ V D KD + DV G +VQYP + G + DY + AH
Sbjct: 212 QTIDTIKTRAEPKGIRIEVVDSKDFKFTE-DVVGCIVQYPSSNGVITDYKEMADRAHQAN 270
Query: 327 VKVVMATDLLALTILKPPGELGADIVVGSAQRFGVPMGYGGPHAAFLATSQEYKRMMPGR 386
VV ATDLL+L +LKPPGE GADI +G++QRFGVP+G+GGPHAAF +T +Y R++PGR
Sbjct: 271 ALVVAATDLLSLALLKPPGEWGADIALGNSQRFGVPLGFGGPHAAFFSTKDKYARLLPGR 330
Query: 387 IVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTI 446
I+GVS D G A R+A+QTREQHIRR+KATSNICT+QALLANM+AMYAVYHG +G+K I
Sbjct: 331 IIGVSKDKQGNSAFRMALQTREQHIRREKATSNICTSQALLANMSAMYAVYHGQQGIKDI 390
Query: 447 AQRVHGLAGTFALGLKKLGTVEVQGLPFFDTVKVKCAD-AHAIASAAYKIEMNLRVVDSN 505
A VH A A G+K+LG V PFFDTV + D + ++N+R S
Sbjct: 391 ANAVHRKAIILAEGIKRLGYT-VLDRPFFDTVLIITGDKTDMMIKELESRQINVRQYCSK 449
Query: 506 TVTASFDETTTLEDVDKLFIVFAGGKSVPFTAAS---LAEEVET--AIPSGLTRESPYLT 560
+++ S DET T D+ L F+ S P +S L +E T I R++P+LT
Sbjct: 450 SISISLDETVTSADISALLNGFSAHASKPLGLSSPEQLEKETSTISVISEEFARQTPFLT 509
Query: 561 HPVFNKYHTEHELLRYIHLLQSKELSLCHSMIPLGSCTMKLNATTEMMPVTWPSFANIHP 620
HP+FN+YH+EHELLRYIH LQ K+L L +MIPLGSCTMKLNATTEM PV+WP F +IHP
Sbjct: 510 HPIFNRYHSEHELLRYIHKLQKKDLGLTTAMIPLGSCTMKLNATTEMYPVSWPEFNSIHP 569
Query: 621 FAPADQAQGYQEMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHR 680
F PA+Q+ GY+EMF ++ LC +TGFD SLQPNAG+ GEYAGLMVIR+Y + G R
Sbjct: 570 FVPANQSLGYKEMFESISNMLCEVTGFDGCSLQPNAGSQGEYAGLMVIRSYLTSIGQSQR 629
Query: 681 NVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPS 740
NVC+IPVSAHGTNPA+AAM GMK+V V D GNI++ +L+ AE ++D L+ LM+TYPS
Sbjct: 630 NVCLIPVSAHGTNPASAAMVGMKVVVVDCDTNGNIDVADLKAKAEKHKDTLAALMITYPS 689
Query: 741 THGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIGADVCHLNLHKTFCIXXX 800
THGV+EEG ++IC IIH NGGQVYMDGANMNAQVGL PG IGADVCHLNLHKTFCI
Sbjct: 690 THGVFEEGANDICDIIHANGGQVYMDGANMNAQVGLCRPGDIGADVCHLNLHKTFCIPHG 749
Query: 801 XXXXXXXXXXVKKHLAPFLPSHPVVS-TGGIPAPEKSQPLGTIAAAPWGSALILPISYTY 859
VK HLAPFLP H VV GG E++ + ++A PWGS+ ILPI+Y Y
Sbjct: 750 GGGPGMGPICVKSHLAPFLPGHSVVKGVGG----ERA--MSAVSAGPWGSSSILPITYVY 803
Query: 860 IAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIE 919
+ +MG +GL +A+++AILNANYMA RL+ HY IL+ G +G VAHEFI+DLR K +AGIE
Sbjct: 804 LKLMGGQGLKKATQVAILNANYMASRLKDHYKILYTGSHGLVAHEFIIDLRMFKESAGIE 863
Query: 920 PEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESK 955
EDVAKRL D FHGPTMSWPVP TLMIEPTESESK
Sbjct: 864 AEDVAKRLQDMNFHGPTMSWPVPNTLMIEPTESESK 899
|
|
| UNIPROTKB|E2R9Z7 GLDC "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 2493 (882.6 bits), Expect = 4.9e-259, P = 4.9e-259
Identities = 478/871 (54%), Positives = 622/871 (71%)
Query: 89 VEALKPS-DTFARRHNSATPEDQAKMSELVGLDNLDSLIDATVPKSIRIDSMKFSKFDEG 147
+E L P D FARRH +DQ +M + +GL ++D LI+ TVP SIR+ + K ++
Sbjct: 56 LERLLPRHDHFARRHIGPGDKDQREMLQALGLASIDELIEKTVPASIRLK--RPLKMEDP 113
Query: 148 LTESQMIEHMQKLASMNKVYKSFIGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQ 207
+ E++++ + ++S N++++S++GMGYYN VP ILRN++EN W TQYTPYQ E++Q
Sbjct: 114 VCENEILTKLHAISSKNQIWRSYMGMGYYNCFVPQTILRNLLENAGWITQYTPYQPEVSQ 173
Query: 208 GRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQ 267
GRLESLLN+QTM+ D+TG+ M+NASLLDE TAAAEAM +C+ + K+K F + CHPQ
Sbjct: 174 GRLESLLNYQTMVCDITGMDMANASLLDEATAAAEAMQLCH--RHNKRKRFFVDPRCHPQ 231
Query: 268 TIDICITRADGFDIKVVVSDLKDIDYKSGDVCGVLVQYPGTEGEVLDYGDFIKNAHANGV 327
TI + TRA + + + ++D+ DV GVL QYP TEG+V D+ + ++ AH G
Sbjct: 232 TIAVVQTRAKYNGVLIELKLPHEMDFSGKDVSGVLFQYPDTEGKVEDFTELVERAHQMGS 291
Query: 328 KVVMATDLLALTILKPPGELGADIVVGSAQRFGVPMGYGGPHAAFLATSQEYKRMMPGRI 387
ATDLLAL ILKPPGE G DI +GS+QRFGVP+GYGGPHAAF A + RMMPGR+
Sbjct: 292 LACCATDLLALCILKPPGEFGVDIALGSSQRFGVPLGYGGPHAAFFAVRESLVRMMPGRM 351
Query: 388 VGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIA 447
VGV+ D++GK R+A+QTREQHIRRDKATSNICTAQALLANMAAM+A+YHG GL+ IA
Sbjct: 352 VGVTRDATGKEVYRLALQTREQHIRRDKATSNICTAQALLANMAAMFAIYHGSRGLEHIA 411
Query: 448 QRVHGLAGTFALGLKKLGTVEVQGLPFFDTVKVKCA-DAHAIASAAYKIEMNLRVVDSNT 506
+RVH + GLK+ G ++Q FFDT+K++C + A + ++N R+ + T
Sbjct: 412 RRVHNATLILSEGLKRAGH-QLQHDLFFDTLKIQCGCSVKEVLDRATQRQVNFRLFEDGT 470
Query: 507 VTASFDETTTLEDVDKLFIVFAGGKSVPFTAASLAEEVETAIP-SGLTRESPYLTHPVFN 565
+ S DET +D+D L +F S A S+ EE + IP + R S +LTH VFN
Sbjct: 471 LGISLDETVNEKDLDDLLWIFGCESSAELVAESMGEE-QRGIPGTAFKRTSSFLTHQVFN 529
Query: 566 KYHTEHELLRYIHLLQSKELSLCHSMIPLGSCTMKLNATTEMMPVTWPSFANIHPFAPAD 625
YH+E ++RY+ L++K++SL HSMIPLGSCTMKLN+++E+ P+TW FANIHPF P D
Sbjct: 530 SYHSETNIVRYMKKLENKDISLVHSMIPLGSCTMKLNSSSELTPITWKEFANIHPFVPLD 589
Query: 626 QAQGYQEMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCII 685
QAQGYQ++F L + LC +TG+D S QPN+GA GEYAGL IRAY +G+ HR VC+I
Sbjct: 590 QAQGYQQLFRELEKDLCELTGYDRISFQPNSGAQGEYAGLATIRAYLDGKGEGHRTVCLI 649
Query: 686 PVSAHGTNPATAAMCGMKIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPSTHGVY 745
P SAHGTNPA+A M GMKI V D GNI+ L+ + +++NL+ +M+TYPST+GV+
Sbjct: 650 PKSAHGTNPASAHMAGMKIQPVEVDKYGNIDTAHLKAMVDKHKENLAAIMITYPSTNGVF 709
Query: 746 EEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIGADVCHLNLHKTFCIXXXXXXXX 805
EE I ++C +IH NGGQVY+DGANMNAQVG+ PG G+DV HLNLHKTFCI
Sbjct: 710 EENIGDVCDLIHQNGGQVYLDGANMNAQVGICRPGDFGSDVSHLNLHKTFCIPHGGGGPG 769
Query: 806 XXXXXVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGS 865
VKKHLAPFLP+HP+VS + E +P+GT++AAPWGS+ ILPIS+ YI MMG
Sbjct: 770 MGPIGVKKHLAPFLPNHPIVS---VKPSEDDRPVGTVSAAPWGSSSILPISWAYIKMMGG 826
Query: 866 KGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAK 925
KGL +A++IAILNANYMAKRLEKHY +LFRG G VAHEFI+D R K +A IE DVAK
Sbjct: 827 KGLKQATEIAILNANYMAKRLEKHYRVLFRGARGYVAHEFILDTRPFKKSANIEAVDVAK 886
Query: 926 RLMDYGFHGPTMSWPVPGTLMIEPTESESKS 956
RL DYGFH PTMSWPV GTLM+EPTESE K+
Sbjct: 887 RLQDYGFHAPTMSWPVAGTLMVEPTESEDKA 917
|
|
| UNIPROTKB|E1BJQ1 GLDC "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 2492 (882.3 bits), Expect = 6.2e-259, P = 6.2e-259
Identities = 477/870 (54%), Positives = 622/870 (71%)
Query: 89 VEALKPS-DTFARRHNSATPEDQAKMSELVGLDNLDSLIDATVPKSIRIDSMKFSKFDEG 147
+E L P D FARRH +DQ +M + +GL ++D LI+ T+P SIR+ + K D+
Sbjct: 53 LERLLPRHDDFARRHIGPGDKDQKEMLQALGLASVDELIEKTIPASIRLK--RPLKMDDP 110
Query: 148 LTESQMIEHMQKLASMNKVYKSFIGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQ 207
+ E++++ + +++ N++++S+IGMGYYN VP ILRN++EN W TQYTPYQ E++Q
Sbjct: 111 VCENEILATLHAISNKNQIWRSYIGMGYYNCSVPQTILRNLLENSGWITQYTPYQPEVSQ 170
Query: 208 GRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQ 267
GRLESLLN+QTM+ D+TGL M+NASLLDE TAAAEAM +C+ ++ K++ F + CHPQ
Sbjct: 171 GRLESLLNYQTMVCDITGLDMANASLLDEATAAAEAMQLCH--RQNKRRKFFVDPRCHPQ 228
Query: 268 TIDICITRADGFDIKVVVSDLKDIDYKSGDVCGVLVQYPGTEGEVLDYGDFIKNAHANGV 327
TI + TRA + + + ++D+ S DV GVL QYP TEG+V D+ + ++ AH G
Sbjct: 229 TIAVVQTRAKYSGVLIELKLPHEMDFSSKDVSGVLFQYPDTEGKVEDFTELVERAHEAGS 288
Query: 328 KVVMATDLLALTILKPPGELGADIVVGSAQRFGVPMGYGGPHAAFLATSQEYKRMMPGRI 387
ATDLLAL IL+PPGE G DI +GS+QRFGVP+GYGGPHAAF A + RMMPGR+
Sbjct: 289 LACCATDLLALCILRPPGEFGVDIALGSSQRFGVPLGYGGPHAAFFAVRENLVRMMPGRM 348
Query: 388 VGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIA 447
VGV+ D SGK R+A+QTREQHIRRDKATSNICTAQALLANMA M+A+YHG GL+ IA
Sbjct: 349 VGVTRDVSGKEVYRLALQTREQHIRRDKATSNICTAQALLANMAVMFAIYHGSHGLEHIA 408
Query: 448 QRVHGLAGTFALGLKKLGTVEVQGLPFFDTVKVKCA-DAHAIASAAYKIEMNLRVVDSNT 506
+RVH + GLK+ G ++Q FFDT+K++C + A + ++N+R+ + T
Sbjct: 409 RRVHNATLILSEGLKRAGH-QLQHDLFFDTLKIQCGCSVKEVLGRAAQRQINIRLFEDGT 467
Query: 507 VTASFDETTTLEDVDKLFIVFAGGKSVPFTAASLAEEVETAIPSGLTRESPYLTHPVFNK 566
+ S DET +D+D L +F S A S+ EE + + R SP+LTH VFN
Sbjct: 468 LGISLDETVNEKDLDDLLWIFGCESSAELVAESMGEERRGILGTAFKRTSPFLTHQVFNS 527
Query: 567 YHTEHELLRYIHLLQSKELSLCHSMIPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQ 626
YH+E ++RY+ L++K++SL HSMIPLGSCTMKLN+++E+ P+TW FANIHPF P DQ
Sbjct: 528 YHSETNIVRYMKRLENKDISLVHSMIPLGSCTMKLNSSSELTPITWKEFANIHPFVPLDQ 587
Query: 627 AQGYQEMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIP 686
AQGYQ++F L + LC +TG+D S QPN+GA GEYAGL IRAY A+G+ HR VC+IP
Sbjct: 588 AQGYQQLFRELEKDLCELTGYDRISFQPNSGAQGEYAGLASIRAYLDAKGETHRTVCLIP 647
Query: 687 VSAHGTNPATAAMCGMKIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPSTHGVYE 746
SAHGTNPA+A M GM+I V D GNI+ L+ + +++NL+ +M+TYPST+GV+E
Sbjct: 648 KSAHGTNPASAHMAGMRIQPVEVDKYGNIDAAHLKAMVDKHKENLAAIMITYPSTNGVFE 707
Query: 747 EGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIGADVCHLNLHKTFCIXXXXXXXXX 806
E I ++C +IH +GGQVY+DGANMNAQVGL PG G+DV HLNLHKTFCI
Sbjct: 708 ENIGDVCDLIHLHGGQVYLDGANMNAQVGLCRPGDFGSDVSHLNLHKTFCIPHGGGGPGM 767
Query: 807 XXXXVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSK 866
VKKHL PFLP+HP++S + E +Q LGT++AAPWGS+ ILPIS+ YI MMG K
Sbjct: 768 GPIGVKKHLVPFLPNHPIIS---LKPSEDAQALGTVSAAPWGSSCILPISWAYIKMMGGK 824
Query: 867 GLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKR 926
GL +A++IAILNANYMAKRLEKHY +LFRG G VAHEFI+D R K +A IE DVAKR
Sbjct: 825 GLKQATEIAILNANYMAKRLEKHYRVLFRGARGYVAHEFILDTRPFKKSANIEAVDVAKR 884
Query: 927 LMDYGFHGPTMSWPVPGTLMIEPTESESKS 956
L DYGFH PTMSWPV GTLMIEPTESE K+
Sbjct: 885 LQDYGFHAPTMSWPVAGTLMIEPTESEDKA 914
|
|
| UNIPROTKB|P23378 GLDC "Glycine dehydrogenase [decarboxylating], mitochondrial" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 2472 (875.2 bits), Expect = 8.2e-257, P = 8.2e-257
Identities = 483/894 (54%), Positives = 631/894 (70%)
Query: 71 SHHNVNGYGLGSQTRGIS--VEALKPS-DTFARRHNSATPEDQAKMSELVGLDNLDSLID 127
S + +G G S G S +E L P D FARRH +DQ +M + +GL ++D LI+
Sbjct: 34 SRDSSSGGG-DSAAAGASRLLERLLPRHDDFARRHIGPGDKDQREMLQTLGLASIDELIE 92
Query: 128 ATVPKSIRIDSMKFSKFDEGLTESQMIEHMQKLASMNKVYKSFIGMGYYNTHVPPVILRN 187
TVP +IR+ + K ++ + E++++ + ++S N++++S+IGMGYYN VP ILRN
Sbjct: 93 KTVPANIRLK--RPLKMEDPVCENEILATLHAISSKNQIWRSYIGMGYYNCSVPQTILRN 150
Query: 188 IMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMC 247
++EN W TQYTPYQ E++QGRLESLLN+QTM+ D+TGL M+NASLLDEGTAAAEA+ +C
Sbjct: 151 LLENSGWITQYTPYQPEVSQGRLESLLNYQTMVCDITGLDMANASLLDEGTAAAEALQLC 210
Query: 248 NNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDLK---DIDYKSGDVCGVLVQ 304
+ K++ F++ CHPQTI + TRA V+++LK ++D+ DV GVL Q
Sbjct: 211 --YRHNKRRKFLVDPRCHPQTIAVVQTRAK---YTGVLTELKLPCEMDFSGKDVSGVLFQ 265
Query: 305 YPGTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKPPGELGADIVVGSAQRFGVPMG 364
YP TEG+V D+ + ++ AH +G ATDLLAL IL+PPGE G DI +GS+QRFGVP+G
Sbjct: 266 YPDTEGKVEDFTELVERAHQSGSLACCATDLLALCILRPPGEFGVDIALGSSQRFGVPLG 325
Query: 365 YGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQ 424
YGGPHAAF A + RMMPGR+VGV+ D++GK R+A+QTREQHIRRDKATSNICTAQ
Sbjct: 326 YGGPHAAFFAVRESLVRMMPGRMVGVTRDATGKEVYRLALQTREQHIRRDKATSNICTAQ 385
Query: 425 ALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDTVKVKCA- 483
ALLANMAAM+A+YHG GL+ IA+RVH + GLK+ G ++Q FFDT+K++C
Sbjct: 386 ALLANMAAMFAIYHGSHGLEHIARRVHNATLILSEGLKRAGH-QLQHDLFFDTLKIQCGC 444
Query: 484 DAHAIASAAYKIEMNLRVVDSNTVTASFDETTTLEDVDKLFIVFAGGKSVPFTAASLAEE 543
+ A + ++N R+ + T+ S DET +D+D L +F S A S+ EE
Sbjct: 445 SVKEVLGRAAQRQINFRLFEDGTLGISLDETVNEKDLDDLLWIFGCESSAELVAESMGEE 504
Query: 544 VETAIPSGL-TRESPYLTHPVFNKYHTEHELLRYIHLLQSKELSLCHSMIPLGSCTMKLN 602
IP + R SP+LTH VFN YH+E ++RY+ L++K++SL HSMIPLGSCTMKLN
Sbjct: 505 CR-GIPGSVFKRTSPFLTHQVFNSYHSETNIVRYMKKLENKDISLVHSMIPLGSCTMKLN 563
Query: 603 ATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFDSFSLQPNAGAAGEY 662
+++E+ P+TW FANIHPF P DQAQGYQ++F L + LC +TG+D QPN+GA GEY
Sbjct: 564 SSSELAPITWKEFANIHPFVPLDQAQGYQQLFRELEKDLCELTGYDQVCFQPNSGAQGEY 623
Query: 663 AGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKGNINIEELRK 722
AGL IRAY +G+ HR VC+IP SAHGTNPA+A M GMKI V D GNI+ L+
Sbjct: 624 AGLATIRAYLNQKGEGHRTVCLIPKSAHGTNPASAHMAGMKIQPVEVDKYGNIDAVHLKA 683
Query: 723 AAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYI 782
+ +++NL+ +M+TYPST+GV+EE I ++C +IH +GGQVY+DGANMNAQVG+ PG
Sbjct: 684 MVDKHKENLAAIMITYPSTNGVFEENISDVCDLIHQHGGQVYLDGANMNAQVGICRPGDF 743
Query: 783 GADVCHLNLHKTFCIXXXXXXXXXXXXXVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTI 842
G+DV HLNLHKTFCI VKKHLAPFLP+HPV+S + E + P+GT+
Sbjct: 744 GSDVSHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPNHPVIS---LKRNEDACPVGTV 800
Query: 843 AAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVA 902
+AAPWGS+ ILPIS+ YI MMG KGL +A++ AILNANYMAKRLE HY ILFRG G V
Sbjct: 801 SAAPWGSSSILPISWAYIKMMGGKGLKQATETAILNANYMAKRLETHYRILFRGARGYVG 860
Query: 903 HEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKS 956
HEFI+D R K +A IE DVAKRL DYGFH PTMSWPV GTLM+EPTESE K+
Sbjct: 861 HEFILDTRPFKKSANIEAVDVAKRLQDYGFHAPTMSWPVAGTLMVEPTESEDKA 914
|
|
| TIGR_CMR|CPS_1276 CPS_1276 "glycine dehydrogenase" [Colwellia psychrerythraea 34H (taxid:167879)] | Back alignment and assigned GO terms |
|---|
Score = 2472 (875.2 bits), Expect = 8.2e-257, P = 8.2e-257
Identities = 485/879 (55%), Positives = 620/879 (70%)
Query: 82 SQTRGISVEALKPSDTFARRH-NSATPEDQAKMSELVGLDNLDSLIDATVPKSIRIDSMK 140
S+T S+ L+ + F RRH + E QA +++L G++++D+LID VP IR+ +
Sbjct: 3 SKTIVNSLAELEQTQDFIRRHIGPSESETQAMLNDL-GVESVDALIDEIVPSDIRLADLP 61
Query: 141 FSKFDEGLTESQMIEHMQKLASMNKVYKSFIGMGYYNTHVPPVILRNIMENPAWYTQYTP 200
+E TE Q + ++ +AS+NKV ++IG+GY+ T P VILRN++ENP WYT YTP
Sbjct: 62 --NVEESKTEVQALADLKAVASLNKVNDTYIGLGYFGTLTPNVILRNVLENPGWYTAYTP 119
Query: 201 YQAEIAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKT-FI 259
YQ EIAQGRLESLLN+Q M DLTGL +++ASLLDEGTAAAEAMA+ + K KK F
Sbjct: 120 YQPEIAQGRLESLLNYQQMCIDLTGLELASASLLDEGTAAAEAMALAKRVSKNKKSNLFF 179
Query: 260 IASNCHPQTIDICITRADGFDIKVVVSDLKDIDYKSGDVCGVLVQYPGTEGEVLDYGDFI 319
I+ + +PQTID+ RA+ F +VV+ D D+ G L+QYPG G+V D + I
Sbjct: 180 ISDDVYPQTIDVVKQRAEMFGFDIVVAPAADA--AEHDIFGALIQYPGASGQVTDVSELI 237
Query: 320 KNAHANGVKVVMATDLLALTILKPPGELGADIVVGSAQRFGVPMGYGGPHAAFLATSQEY 379
H N V +A D+++L +LK PGELGAD V+GS+QRFGVPMGYGGPHAAF T +Y
Sbjct: 238 AKIHDNKGIVAVAADIMSLVLLKSPGELGADAVIGSSQRFGVPMGYGGPHAAFFTTLDKY 297
Query: 380 KRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHG 439
KR +PGRI+GVS D+ GK ALR+AMQTREQHIRR+KA SN+CTAQ LLANMAA YAVYHG
Sbjct: 298 KRSLPGRIIGVSKDTRGKNALRMAMQTREQHIRREKANSNVCTAQVLLANMAAFYAVYHG 357
Query: 440 PEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDTVKVKCADAHAIASAAYKIEMNL 499
P+GLKTIA R+H LA LG G V +FDT+ + I + A N
Sbjct: 358 PQGLKTIANRIHRLADILCLGTATKGLTAVHA-NYFDTLTFNVDNKDEIVARALAANANF 416
Query: 500 RVVDSNTVTASFDETTTLEDVDKLFIVFAG---GKSVPFTAASLAEEVETAIPSGLTRES 556
R ++ + DETTT E+V +LF + G G +V + ++IP+ L RES
Sbjct: 417 RTDVDGQISIALDETTTRENVAQLFDILLGEGHGLNVSDLDDQIVASGHSSIPASLVRES 476
Query: 557 PYLTHPVFNKYHTEHELLRYIHLLQSKELSLCHSMIPLGSCTMKLNATTEMMPVTWPSFA 616
LTHPVFN YH+E E+LRYI L++K+L+L HSMI LGSCTMKLNAT +M+PV+WP FA
Sbjct: 477 AILTHPVFNSYHSETEMLRYIKRLENKDLALNHSMISLGSCTMKLNATAQMIPVSWPEFA 536
Query: 617 NIHPFAPADQAQGYQEMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARG 676
N+HPFAP +QAQGY+ M + L +WL +TG+D S+QPN+GA GEYAGL+ I YH++RG
Sbjct: 537 NMHPFAPVNQAQGYKAMIDELAKWLVELTGYDKMSMQPNSGAQGEYAGLIAISKYHESRG 596
Query: 677 DHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKGNINIEELRKAAEANRDNLSTLMV 736
D HRN+C+IP SAHGTNPA+A M MKIV V D +GN+++ +L+ AE DNL+ +M+
Sbjct: 597 DSHRNICLIPASAHGTNPASAMMVDMKIVIVACDKEGNVDMADLKAKAEELADNLACIMI 656
Query: 737 TYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIGADVCHLNLHKTFC 796
TYPSTHGVYE I EIC IIHDNGGQVY+DGANMNAQVGLTSPG+IGADV HLNLHKTF
Sbjct: 657 TYPSTHGVYETTIAEICNIIHDNGGQVYLDGANMNAQVGLTSPGFIGADVSHLNLHKTFA 716
Query: 797 IXXXXXXXXXXXXXVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPIS 856
I VK HLAPFLP H +++ E ++ G +++AP+GSA ILPI+
Sbjct: 717 IPHGGGGPGMGPIGVKSHLAPFLPDHALINVD-----EATKGNGAVSSAPFGSASILPIT 771
Query: 857 YTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTA 916
Y YIA++G KG+T+A+K AI NANY++K+L +HYPIL+ G NG VAHE IVDLR LK ++
Sbjct: 772 YLYIALLGKKGVTDATKYAITNANYVSKKLSEHYPILYSGKNGRVAHECIVDLRPLKASS 831
Query: 917 GIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESK 955
G+ D+AKRLMDYGFH PTMS+PV GT MIEPTESESK
Sbjct: 832 GVTEVDMAKRLMDYGFHSPTMSFPVAGTFMIEPTESESK 870
|
|
| TIGR_CMR|CPS_3846 CPS_3846 "glycine dehydrogenase" [Colwellia psychrerythraea 34H (taxid:167879)] | Back alignment and assigned GO terms |
|---|
Score = 2466 (873.1 bits), Expect = 3.6e-256, P = 3.6e-256
Identities = 478/860 (55%), Positives = 622/860 (72%)
Query: 98 FARRHNSATPEDQAKMSELVGLDNLDSLIDATVPKSIRI-DSMKFSKFDEGLTESQMIEH 156
F RHN Q M + + +D+++ +ID TVP +IR+ M +K +E +M+
Sbjct: 16 FISRHNGPDRTQQQHMLDTLKVDSIEQMIDKTVPDNIRLLQPMALAKPQ---SEIEMLAT 72
Query: 157 MQKLASMNKVYKSFIGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNF 216
++ +AS NKV +S+IG GYY+THVP VILRN+ ENP WYT YTPYQ EI+QGRLE+LLNF
Sbjct: 73 LKGIASKNKVNRSYIGQGYYDTHVPHVILRNVFENPGWYTAYTPYQPEISQGRLEALLNF 132
Query: 217 QTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRA 276
Q MI DLT + +SNASLLDE TAAAEAM++C K K F ++ + HPQT+D+ TRA
Sbjct: 133 QQMITDLTAMELSNASLLDEATAAAEAMSLCKRASKNKSNVFFVSDDVHPQTLDVINTRA 192
Query: 277 DGFDIKVVVSDLKDIDYKSGDVCGVLVQYPGTEGEVLDYGDFIKNAHANGVKVVMATDLL 336
F +VVV+ +++ + DV G L+QYPGT G+V + I+ AH+ V +A DLL
Sbjct: 193 KYFSFEVVVAPCSELE--NHDVFGALLQYPGTTGQVHNLEKIIEQAHSKKTLVAVAADLL 250
Query: 337 ALTILKPPGELGADIVVGSAQRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSG 396
ALT+LK PGE+GAD+V+GSAQRFGVPMGYGGPHAAF+AT ++YKR +PGR++GVSIDS G
Sbjct: 251 ALTVLKAPGEMGADVVIGSAQRFGVPMGYGGPHAAFMATKEKYKRTIPGRVIGVSIDSKG 310
Query: 397 KPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGT 456
KPALR+AMQTREQHIRR+KA SNICTAQALLANMA+ YAVYHGP+GL+ + +RV+ L
Sbjct: 311 KPALRMAMQTREQHIRREKANSNICTAQALLANMASFYAVYHGPQGLRKMGRRVNRLTSV 370
Query: 457 FALGLKKLGTVEVQGLPFFDTVKVKCAD-AHAIASAAYKIEMNLRVVDSNTVTASFDETT 515
A GL+K G +E+ FFDT+ ++ + AI A ++NLR++ + S DETT
Sbjct: 371 LAAGLQKAG-IELVHNDFFDTITLQTNEKTDAIYQRALAADLNLRLLPDQ-LGISLDETT 428
Query: 516 TLEDVDKLFIVFAGGK-SVPFTAASLAEEVETAIPSGLTRESPYLTHPVFNKYHTEHELL 574
T DV+ L++ +V +L+ E IP+ R S YL+HPVFN YH+E +L
Sbjct: 429 TSADVEALWLAITEQSFNVDDIEQTLSAEF-CNIPADCQRTSEYLSHPVFNSYHSETRML 487
Query: 575 RYIHLLQSKELSLCHSMIPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMF 634
RY+ L++K+ SL H MIPLGSCTMKLNAT +M+PVTWP F+ +HPFAP+DQ GY+ +
Sbjct: 488 RYLKSLENKDFSLTHGMIPLGSCTMKLNATAQMIPVTWPEFSRMHPFAPSDQCTGYETLA 547
Query: 635 NNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNP 694
+ + L ITG+D+FSLQPN+GA GEYAGL+ I+ YH +RG+ +RN+C+IP SAHGTNP
Sbjct: 548 ESFSDMLIEITGYDAFSLQPNSGAQGEYAGLIAIQRYHASRGEDYRNICLIPSSAHGTNP 607
Query: 695 ATAAMCGMKIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICK 754
A+A+M M+IV V D +GN+++++L++ +RD LS +M+TYPSTHGVYEE I EIC+
Sbjct: 608 ASASMVSMRIVLVNCDKEGNVDLDDLKEKINLHRDQLSAMMITYPSTHGVYEESIKEICE 667
Query: 755 IIHDNGGQVYMDGANMNAQVGLTSPGYIGADVCHLNLHKTFCIXXXXXXXXXXXXXVKKH 814
+IH+ GGQVY+DGANMNAQVGLTSPG+IGADV HLNLHKTFCI VK H
Sbjct: 668 LIHEAGGQVYLDGANMNAQVGLTSPGFIGADVSHLNLHKTFCIPHGGGGPGMGPIGVKSH 727
Query: 815 LAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKI 874
LA FLP H V +T +G ++A GSA ILPIS+ YIA+MG++GL A+++
Sbjct: 728 LADFLPGHSVTNT-----------VGAVSATALGSASILPISWAYIALMGAEGLKSATEL 776
Query: 875 AILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHG 934
AILNANY+ ++L HYPILFRG G VAHE I+DLR LK ++GI EDVAKRLMD+GFH
Sbjct: 777 AILNANYIMEKLSPHYPILFRGKQGRVAHECIIDLRPLKESSGISEEDVAKRLMDFGFHA 836
Query: 935 PTMSWPVPGTLMIEPTESES 954
PTMS+PV GTLMIEPTESES
Sbjct: 837 PTMSFPVAGTLMIEPTESES 856
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| C5BAT0 | GCSP_EDWI9 | 1, ., 4, ., 4, ., 2 | 0.5491 | 0.8720 | 0.8947 | yes | no |
| Q8DII3 | GCSP_THEEB | 1, ., 4, ., 4, ., 2 | 0.5820 | 0.8558 | 0.8836 | yes | no |
| Q055P8 | GCSP_LEPBL | 1, ., 4, ., 4, ., 2 | 0.5735 | 0.8598 | 0.8786 | yes | no |
| A7N5C4 | GCSP_VIBHB | 1, ., 4, ., 4, ., 2 | 0.5813 | 0.8629 | 0.8909 | yes | no |
| C3JYR1 | GCSP_PSEFS | 1, ., 4, ., 4, ., 2 | 0.5704 | 0.8588 | 0.8942 | yes | no |
| Q47XG2 | GCSP2_COLP3 | 1, ., 4, ., 4, ., 2 | 0.5709 | 0.8507 | 0.8765 | yes | no |
| B5EUH1 | GCSP_VIBFM | 1, ., 4, ., 4, ., 2 | 0.5778 | 0.8639 | 0.8910 | yes | no |
| Q1LHM2 | GCSP_RALME | 1, ., 4, ., 4, ., 2 | 0.5676 | 0.8670 | 0.8767 | yes | no |
| P26969 | GCSP_PEA | 1, ., 4, ., 4, ., 2 | 0.8309 | 0.9614 | 0.8959 | N/A | no |
| Q04PM7 | GCSP_LEPBJ | 1, ., 4, ., 4, ., 2 | 0.5735 | 0.8598 | 0.8786 | yes | no |
| Q3M9G1 | GCSP_ANAVT | 1, ., 4, ., 4, ., 2 | 0.5921 | 0.8598 | 0.8696 | yes | no |
| P49361 | GCSPA_FLAPR | 1, ., 4, ., 4, ., 2 | 0.8547 | 0.9492 | 0.9016 | N/A | no |
| P49362 | GCSPB_FLAPR | 1, ., 4, ., 4, ., 2 | 0.8557 | 0.9461 | 0.9013 | N/A | no |
| Q7MEH9 | GCSP_VIBVY | 1, ., 4, ., 4, ., 2 | 0.5739 | 0.8639 | 0.8920 | yes | no |
| P74416 | GCSP_SYNY3 | 1, ., 4, ., 4, ., 2 | 0.6032 | 0.8720 | 0.8738 | N/A | no |
| B2T7I8 | GCSP_BURPP | 1, ., 4, ., 4, ., 2 | 0.5678 | 0.8741 | 0.8803 | yes | no |
| Q0BJI1 | GCSP_BURCM | 1, ., 4, ., 4, ., 2 | 0.5644 | 0.8710 | 0.88 | yes | no |
| Q9RTF5 | GCSP_DEIRA | 1, ., 4, ., 4, ., 2 | 0.5689 | 0.8619 | 0.8946 | yes | no |
| O80988 | GCSP1_ARATH | 1, ., 4, ., 4, ., 2 | 0.8329 | 0.9553 | 0.9013 | no | no |
| Q8F937 | GCSP_LEPIN | 1, ., 4, ., 4, ., 2 | 0.5735 | 0.8598 | 0.8786 | yes | no |
| Q3IFW1 | GCSP_PSEHT | 1, ., 4, ., 4, ., 2 | 0.5756 | 0.8710 | 0.8909 | yes | no |
| Q6MPZ6 | GCSP_BDEBA | 1, ., 4, ., 4, ., 2 | 0.5724 | 0.8741 | 0.8987 | yes | no |
| Q5DZM3 | GCSP_VIBF1 | 1, ., 4, ., 4, ., 2 | 0.5790 | 0.8639 | 0.8910 | yes | no |
| Q4K7Q8 | GCSP1_PSEF5 | 1, ., 4, ., 4, ., 2 | 0.5732 | 0.8609 | 0.8916 | yes | no |
| Q87I05 | GCSP_VIBPA | 1, ., 4, ., 4, ., 2 | 0.5813 | 0.8629 | 0.8909 | yes | no |
| B2J427 | GCSP_NOSP7 | 1, ., 4, ., 4, ., 2 | 0.5923 | 0.8649 | 0.8702 | yes | no |
| Q54KM7 | GCSP_DICDI | 1, ., 4, ., 4, ., 2 | 0.5810 | 0.8649 | 0.8571 | yes | no |
| Q2STK2 | GCSP_BURTA | 1, ., 4, ., 4, ., 2 | 0.5661 | 0.8629 | 0.8717 | yes | no |
| A9ACU3 | GCSP_BURM1 | 1, ., 4, ., 4, ., 2 | 0.5712 | 0.8710 | 0.88 | yes | no |
| O49852 | GCSP_FLATR | 1, ., 4, ., 4, ., 2 | 0.8537 | 0.9461 | 0.9013 | N/A | no |
| O49850 | GCSP_FLAAN | 1, ., 4, ., 4, ., 2 | 0.8557 | 0.9461 | 0.9013 | N/A | no |
| B1YQQ1 | GCSP_BURA4 | 1, ., 4, ., 4, ., 2 | 0.5667 | 0.8710 | 0.88 | yes | no |
| Q13SR6 | GCSP_BURXL | 1, ., 4, ., 4, ., 2 | 0.5724 | 0.8741 | 0.8803 | yes | no |
| Q6LHN5 | GCSP_PHOPR | 1, ., 4, ., 4, ., 2 | 0.5797 | 0.8609 | 0.8842 | yes | no |
| C3LUU7 | GCSP_VIBCM | 1, ., 4, ., 4, ., 2 | 0.5790 | 0.8629 | 0.8909 | yes | no |
| B6ES35 | GCSP_ALISL | 1, ., 4, ., 4, ., 2 | 0.5790 | 0.8639 | 0.8910 | yes | no |
| Q72VI8 | GCSP_LEPIC | 1, ., 4, ., 4, ., 2 | 0.5724 | 0.8598 | 0.8786 | yes | no |
| O49954 | GCSP_SOLTU | 1, ., 4, ., 4, ., 2 | 0.8378 | 0.9482 | 0.9024 | N/A | no |
| Q91W43 | GCSP_MOUSE | 1, ., 4, ., 4, ., 2 | 0.5735 | 0.8730 | 0.8390 | yes | no |
| Q8D7G7 | GCSP_VIBVU | 1, ., 4, ., 4, ., 2 | 0.5739 | 0.8639 | 0.8920 | yes | no |
| Q8YNF9 | GCSP_NOSS1 | 1, ., 4, ., 4, ., 2 | 0.5873 | 0.8619 | 0.8636 | yes | no |
| P23378 | GCSP_HUMAN | 1, ., 4, ., 4, ., 2 | 0.5601 | 0.8700 | 0.8401 | yes | no |
| Q39KU1 | GCSP_BURS3 | 1, ., 4, ., 4, ., 2 | 0.5587 | 0.8710 | 0.88 | yes | no |
| A5EYY8 | GCSP_VIBC3 | 1, ., 4, ., 4, ., 2 | 0.5790 | 0.8629 | 0.8909 | yes | no |
| P15505 | GCSP_CHICK | 1, ., 4, ., 4, ., 2 | 0.5555 | 0.8730 | 0.8565 | yes | no |
| A1SY74 | GCSP_PSYIN | 1, ., 4, ., 4, ., 2 | 0.5714 | 0.8659 | 0.8830 | yes | no |
| Q2SFI6 | GCSP_HAHCH | 1, ., 4, ., 4, ., 2 | 0.5794 | 0.8741 | 0.8968 | yes | no |
| Q4ZXH2 | GCSP_PSEU2 | 1, ., 4, ., 4, ., 2 | 0.5701 | 0.8588 | 0.8867 | yes | no |
| Q94B78 | GCSP2_ARATH | 1, ., 4, ., 4, ., 2 | 0.8336 | 0.9512 | 0.9035 | yes | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 985 | |||
| PLN02414 | 993 | PLN02414, PLN02414, glycine dehydrogenase (decarbo | 0.0 | |
| PRK05367 | 954 | PRK05367, PRK05367, glycine dehydrogenase; Provisi | 0.0 | |
| TIGR00461 | 939 | TIGR00461, gcvP, glycine dehydrogenase (decarboxyl | 0.0 | |
| PRK12566 | 954 | PRK12566, PRK12566, glycine dehydrogenase; Provisi | 0.0 | |
| pfam02347 | 429 | pfam02347, GDC-P, Glycine cleavage system P-protei | 0.0 | |
| COG1003 | 496 | COG1003, GcvP, Glycine cleavage system protein P ( | 0.0 | |
| COG0403 | 450 | COG0403, GcvP, Glycine cleavage system protein P ( | 0.0 | |
| PRK04366 | 481 | PRK04366, PRK04366, glycine dehydrogenase subunit | 1e-163 | |
| cd00613 | 398 | cd00613, GDC-P, Glycine cleavage system P-protein, | 1e-160 | |
| cd00613 | 398 | cd00613, GDC-P, Glycine cleavage system P-protein, | 1e-157 | |
| PRK00451 | 447 | PRK00451, PRK00451, glycine dehydrogenase subunit | 1e-117 | |
| cd01494 | 170 | cd01494, AAT_I, Aspartate aminotransferase (AAT) s | 1e-11 | |
| pfam02347 | 429 | pfam02347, GDC-P, Glycine cleavage system P-protei | 5e-11 | |
| PRK00451 | 447 | PRK00451, PRK00451, glycine dehydrogenase subunit | 4e-10 | |
| COG0520 | 405 | COG0520, csdA, Selenocysteine lyase/Cysteine desul | 1e-08 | |
| COG0403 | 450 | COG0403, GcvP, Glycine cleavage system protein P ( | 1e-07 | |
| cd06450 | 345 | cd06450, DOPA_deC_like, DOPA decarboxylase family | 5e-06 | |
| COG0076 | 460 | COG0076, GadB, Glutamate decarboxylase and related | 3e-04 | |
| smart00263 | 127 | smart00263, LYZ1, Alpha-lactalbumin / lysozyme C | 5e-04 | |
| COG1003 | 496 | COG1003, GcvP, Glycine cleavage system protein P ( | 0.002 | |
| COG0520 | 405 | COG0520, csdA, Selenocysteine lyase/Cysteine desul | 0.003 |
| >gnl|CDD|178035 PLN02414, PLN02414, glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Score = 1881 bits (4875), Expect = 0.0
Identities = 762/874 (87%), Positives = 815/874 (93%), Gaps = 1/874 (0%)
Query: 82 SQTRGISVEALKPSDTFARRHNSATPEDQAKMSELVGLDNLDSLIDATVPKSIRIDSMKF 141
QTR ISVEALKPSDTF RRHNSATPE+Q M+E G D+LD+LIDATVPKSIR+DSMK
Sbjct: 19 EQTRSISVEALKPSDTFPRRHNSATPEEQKAMAEYCGFDSLDALIDATVPKSIRLDSMKL 78
Query: 142 SKFDEGLTESQMIEHMQKLASMNKVYKSFIGMGYYNTHVPPVILRNIMENPAWYTQYTPY 201
SK+DEGLTESQM+EHM+ LAS NKV+KS+IGMGYYNTHVPPVILRNI+ENP WYTQYTPY
Sbjct: 79 SKYDEGLTESQMLEHMKSLASKNKVFKSYIGMGYYNTHVPPVILRNILENPGWYTQYTPY 138
Query: 202 QAEIAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIA 261
QAEIAQGRLESLLN+QTMI DLTGLPMSNASLLDEGTAAAEAMAMCNNI KGKKK F+IA
Sbjct: 139 QAEIAQGRLESLLNYQTMITDLTGLPMSNASLLDEGTAAAEAMAMCNNILKGKKKKFLIA 198
Query: 262 SNCHPQTIDICITRADGFDIKVVVSDLKDIDYKSGDVCGVLVQYPGTEGEVLDYGDFIKN 321
SNCHPQTID+C TRADG ++VVV+D KD DY SGDVCGVLVQYP T+GEVLDY +F+KN
Sbjct: 199 SNCHPQTIDVCQTRADGLGLEVVVADEKDFDYSSGDVCGVLVQYPATDGEVLDYAEFVKN 258
Query: 322 AHANGVKVVMATDLLALTILKPPGELGADIVVGSAQRFGVPMGYGGPHAAFLATSQEYKR 381
AHANGVKVVMATDLLALT+LKPPGE GADIVVGSAQRFGVPMGYGGPHAAFLATSQEYKR
Sbjct: 259 AHANGVKVVMATDLLALTMLKPPGEWGADIVVGSAQRFGVPMGYGGPHAAFLATSQEYKR 318
Query: 382 MMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPE 441
+MPGRI+GVS+DSSGKPALR+AMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPE
Sbjct: 319 LMPGRIIGVSVDSSGKPALRMAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPE 378
Query: 442 GLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDTVKVKCADAHAIASAAYKIEMNLRV 501
GLKTIAQRVHGLAG FA GLKKLG +VQ LPFFDTVKVKC+DA AIA AA K+ +NLRV
Sbjct: 379 GLKTIAQRVHGLAGVFAAGLKKLG-FQVQSLPFFDTVKVKCSDADAIADAAAKVGINLRV 437
Query: 502 VDSNTVTASFDETTTLEDVDKLFIVFAGGKSVPFTAASLAEEVETAIPSGLTRESPYLTH 561
VD+NTVT SFDETTTLEDVDKLF VFAGGK VPFTA SLA EV+++IPS L RESPYLTH
Sbjct: 438 VDANTVTVSFDETTTLEDVDKLFKVFAGGKPVPFTAESLAPEVDSSIPSSLARESPYLTH 497
Query: 562 PVFNKYHTEHELLRYIHLLQSKELSLCHSMIPLGSCTMKLNATTEMMPVTWPSFANIHPF 621
P+FN+YH+EHELLRY+H LQ+K+LSL HSMIPLGSCTMKLNATTEMMPVTWP FANIHPF
Sbjct: 498 PIFNQYHSEHELLRYLHRLQNKDLSLVHSMIPLGSCTMKLNATTEMMPVTWPEFANIHPF 557
Query: 622 APADQAQGYQEMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRN 681
AP DQAQGYQEMF +LG+ LC ITGFDSFSLQPNAGAAGEYAGLMVIRAYH +RGDHHRN
Sbjct: 558 APVDQAQGYQEMFEDLGDLLCEITGFDSFSLQPNAGAAGEYAGLMVIRAYHLSRGDHHRN 617
Query: 682 VCIIPVSAHGTNPATAAMCGMKIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPST 741
VCIIPVSAHGTNPA+AAMCGMKIV VGTDAKGNINIEELRKAAEA++DNL+ LMVTYPST
Sbjct: 618 VCIIPVSAHGTNPASAAMCGMKIVVVGTDAKGNINIEELRKAAEAHKDNLAALMVTYPST 677
Query: 742 HGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIGADVCHLNLHKTFCIPHGG 801
HGVYEEGIDEIC IIHDNGGQVYMDGANMNAQVGLTSPG+IGADVCHLNLHKTFCIPHGG
Sbjct: 678 HGVYEEGIDEICDIIHDNGGQVYMDGANMNAQVGLTSPGFIGADVCHLNLHKTFCIPHGG 737
Query: 802 GGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIA 861
GGPGMGPIGVKKHLAPFLPSHPVV TGGIP PEK+QPLGTI+AAPWGSALILPISYTYIA
Sbjct: 738 GGPGMGPIGVKKHLAPFLPSHPVVPTGGIPRPEKTQPLGTISAAPWGSALILPISYTYIA 797
Query: 862 MMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPE 921
MMGS+GLT+ASKIAILNANYMAKRLE HYP+LFRG NGT AHEFI+DLR KNTAGIEPE
Sbjct: 798 MMGSEGLTDASKIAILNANYMAKRLEGHYPVLFRGKNGTCAHEFIIDLRPFKNTAGIEPE 857
Query: 922 DVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESK 955
DVAKRLMDYGFH PTMSWPVPGTLMIEPTESESK
Sbjct: 858 DVAKRLMDYGFHAPTMSWPVPGTLMIEPTESESK 891
|
Length = 993 |
| >gnl|CDD|235432 PRK05367, PRK05367, glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 1632 bits (4230), Expect = 0.0
Identities = 535/867 (61%), Positives = 655/867 (75%), Gaps = 12/867 (1%)
Query: 91 ALKPSDTFARRHNSATPEDQAKMSELVGLDNLDSLIDATVPKSIRIDSMKFSKFDEGLTE 150
L+ SD FARRH + DQ M +G D+LD+LID VP SIR+ L+E
Sbjct: 3 QLENSDAFARRHIGPSAADQQAMLAALGADSLDALIDQAVPASIRLAE--PLDLPAALSE 60
Query: 151 SQMIEHMQKLASMNKVYKSFIGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRL 210
++ + ++ +AS NKV++S+IG GYY TH PPVILRNI+ENPAWYT YTPYQ EI+QGRL
Sbjct: 61 AEALAELRAIASKNKVFRSYIGQGYYGTHTPPVILRNILENPAWYTAYTPYQPEISQGRL 120
Query: 211 ESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTID 270
E+LLNFQTM+ADLTGL ++NASLLDE TAAAEAMA+ + K K F + + HPQT+D
Sbjct: 121 EALLNFQTMVADLTGLEIANASLLDEATAAAEAMALAKRVSKSKSNRFFVDDDVHPQTLD 180
Query: 271 ICITRADGFDIKVVVSDLKDIDYKSGDVCGVLVQYPGTEGEVLDYGDFIKNAHANGVKVV 330
+ TRA+ I+VVV D DV GVL+QYPGT GEV DY I AHA G V
Sbjct: 181 VLRTRAEPLGIEVVVGDAAK-ALDHDDVFGVLLQYPGTSGEVRDYTALIAAAHARGALVA 239
Query: 331 MATDLLALTILKPPGELGADIVVGSAQRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGV 390
+A DLLALT+L PPGE+GADI VGSAQRFGVPMG+GGPHAA+ A YKR MPGRIVGV
Sbjct: 240 VAADLLALTLLTPPGEMGADIAVGSAQRFGVPMGFGGPHAAYFAVRDAYKRSMPGRIVGV 299
Query: 391 SIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRV 450
S+D++G PALR+A+QTREQHIRR+KATSNICTAQ LLA MA+MYAVYHGPEGLK IA+RV
Sbjct: 300 SVDAAGNPALRLALQTREQHIRREKATSNICTAQVLLAVMASMYAVYHGPEGLKAIARRV 359
Query: 451 HGLAGTFALGLKKLGTVEVQGLPFFDTVKVKC-ADAHAIASAAYKIEMNLRVVDSNTVTA 509
H LA A GL+ LG +EV FFDT+ V+ DA A+ + A +NLR VD + V
Sbjct: 360 HRLAAILAAGLRALG-LEVVHDSFFDTLTVEVGGDAAAVLARALAAGINLRRVDDDHVGI 418
Query: 510 SFDETTTLEDVDKLFIVFAGGK-SVPFTAASLAEEVETAIPSGLTRESPYLTHPVFNKYH 568
S DETTT ED+ L VF G V A +A+ +A+P+ L R S YLTHPVFN+YH
Sbjct: 419 SLDETTTREDLAALLAVFGGAALDVDALDADVADASASALPAALLRTSAYLTHPVFNRYH 478
Query: 569 TEHELLRYIHLLQSKELSLCHSMIPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQ 628
+E E++RY+ L+ K+L+L SMIPLGSCTMKLNA EM+P+TWP FAN+HPFAPA+QA
Sbjct: 479 SETEMMRYLRRLEDKDLALDRSMIPLGSCTMKLNAAAEMIPITWPEFANLHPFAPAEQAA 538
Query: 629 GYQEMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVS 688
GY+E+ + L WL ITG+D+ SLQPNAGA GEYAGL+ IRAYH++RG+ HR+VC+IP S
Sbjct: 539 GYRELIDQLEAWLAEITGYDAVSLQPNAGAQGEYAGLLAIRAYHESRGEGHRDVCLIPSS 598
Query: 689 AHGTNPATAAMCGMKIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEG 748
AHGTNPA+A M GMK+V V D GNI++++LR AE + DNL+ +M+TYPSTHGV+EE
Sbjct: 599 AHGTNPASAVMAGMKVVVVACDENGNIDLDDLRAKAEEHADNLAAIMITYPSTHGVFEET 658
Query: 749 IDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIGADVCHLNLHKTFCIPHGGGGPGMGP 808
I EIC+I+H++GGQVY+DGANMNAQVGL PG IGADV HLNLHKTFCIPHGGGGPG+GP
Sbjct: 659 IREICEIVHEHGGQVYLDGANMNAQVGLARPGDIGADVSHLNLHKTFCIPHGGGGPGVGP 718
Query: 809 IGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGL 868
IGVK HLAPFLP HPV GG +G ++AAP+GSA ILPIS+ YI MMG++GL
Sbjct: 719 IGVKAHLAPFLPGHPVQIAGG------ETGIGAVSAAPFGSASILPISWMYIRMMGAEGL 772
Query: 869 TEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLM 928
+A+++AILNANY+AKRL+ HYP+L+ G NG VAHE I+DLR LK + GI +D+AKRL+
Sbjct: 773 RQATEVAILNANYIAKRLKDHYPVLYTGANGRVAHECILDLRPLKESTGITVDDIAKRLI 832
Query: 929 DYGFHGPTMSWPVPGTLMIEPTESESK 955
DYGFH PTMS+PV GTLM+EPTESESK
Sbjct: 833 DYGFHAPTMSFPVAGTLMVEPTESESK 859
|
Length = 954 |
| >gnl|CDD|129553 TIGR00461, gcvP, glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Score = 1240 bits (3209), Expect = 0.0
Identities = 509/857 (59%), Positives = 634/857 (73%), Gaps = 8/857 (0%)
Query: 101 RHNSATPEDQAKMSELVGLDNLDSLIDATVPKSIRIDSMKFSKFDEGLTESQMIEHMQKL 160
RH +P DQ KM + +G +L++LI+ VP +I + + + E + + H++K+
Sbjct: 1 RHLGPSPSDQKKMLKTMGYSDLNALIEQLVPPNILK--RRPLQLEAPSKEYEALAHLKKI 58
Query: 161 ASMNKVYKSFIGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMI 220
AS N +KS+IGMGYY T +PPVI RN++ENP WYT YTPYQ EI+QGRLE+LLNFQT++
Sbjct: 59 ASKNHKFKSYIGMGYYGTILPPVIQRNLLENPGWYTAYTPYQPEISQGRLEALLNFQTVV 118
Query: 221 ADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFD 280
+DLTGLP++NASLLDEGTAAAEAMA+ N+ K K F +A + HPQT + TRA F
Sbjct: 119 SDLTGLPVANASLLDEGTAAAEAMALSFNVSKKKANKFFVAKDLHPQTKSVLHTRAKPFG 178
Query: 281 IKVVVSDLKDIDYKSGDVCGVLVQYPGTEGEVLDYGDFIKNAHANGVKVVMATDLLALTI 340
I+V+V D DI K+ DV G L+QYP T+G +LDY I H++ V +A DL+ALT+
Sbjct: 179 IEVIVVDCSDIK-KAVDVFGCLLQYPATDGSILDYKQLIDALHSHKSLVSVAADLMALTL 237
Query: 341 LKPPGELGADIVVGSAQRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPAL 400
L PPG GADIV+GS+QRFGVPMGYGGPHAAF A EY R MPGRIVGVS D+ G AL
Sbjct: 238 LTPPGHYGADIVLGSSQRFGVPMGYGGPHAAFFAVKDEYNRKMPGRIVGVSKDALGNTAL 297
Query: 401 RVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALG 460
R+A+QTREQHIRRDKATSNICTAQ LLAN+A+ Y VYHGP+GLK IA+R+H L A G
Sbjct: 298 RLALQTREQHIRRDKATSNICTAQVLLANVASSYCVYHGPKGLKNIARRIHSLTSILANG 357
Query: 461 LKKLGTVEVQGLPFFDTVKVKCAD--AHAIASAAYKIEMNLRVVDSNTVTASFDETTTLE 518
L+ E+ +FDT+ VK + + + AA + +NLR VD+ TV + DETTT
Sbjct: 358 LENDP-HELINKTWFDTLTVKVGNGISSELLKAAEEFNINLRAVDTTTVGIALDETTTKA 416
Query: 519 DVDKLFIVFAGGKSVPFTAASLAEEVETAIPSGLTRESPYLTHPVFNKYHTEHELLRYIH 578
DV+ L VF G + ++ L+E+V + P R L + VFN YH+E E+LRY+H
Sbjct: 417 DVENLLKVFDGEDNHGLSSQFLSEDVSNSFPREFQRTDEILRNEVFNMYHSETEMLRYLH 476
Query: 579 LLQSKELSLCHSMIPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLG 638
L+SK+L+L +SMIPLGSCTMKLNAT EMMP+TWP F+NIHPF P++Q +GYQE+ L
Sbjct: 477 RLESKDLALNNSMIPLGSCTMKLNATAEMMPITWPEFSNIHPFQPSNQVEGYQELIAQLE 536
Query: 639 EWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAA 698
+WLC+ITGFD+ SLQPN+GA GEYAGL VIR+YH++RG++HRN+C+IPVSAHGTNPA+AA
Sbjct: 537 KWLCSITGFDAISLQPNSGAQGEYAGLRVIRSYHESRGENHRNICLIPVSAHGTNPASAA 596
Query: 699 MCGMKIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHD 758
M GM++V V D GNI++ +L+ AE + D L+ +MVTYPSTHGV+E I C I+H
Sbjct: 597 MAGMQVVPVNCDQDGNIDLVDLKNKAEQHGDELAAVMVTYPSTHGVFEPTIQHACDIVHS 656
Query: 759 NGGQVYMDGANMNAQVGLTSPGYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPF 818
GGQVY+DGANMNAQVGLTSPG +GADVCHLNLHKTFCIPHGGGGPGMGPIGVK HL PF
Sbjct: 657 FGGQVYLDGANMNAQVGLTSPGDLGADVCHLNLHKTFCIPHGGGGPGMGPIGVKSHLIPF 716
Query: 819 LPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILN 878
LP H VVS KS G+++AAP+GSA ILPIS+ YI MMG++GL +AS +AILN
Sbjct: 717 LPKHDVVSMITGIGGSKSI--GSVSAAPYGSASILPISWMYIKMMGNEGLPKASVVAILN 774
Query: 879 ANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMS 938
ANYMA RL+ HYPILF G VAHE I+DLR LK GIE DVAKRL DYGFH PT+S
Sbjct: 775 ANYMATRLKDHYPILFVGTLKHVAHECILDLRPLKAKTGIEAIDVAKRLQDYGFHAPTLS 834
Query: 939 WPVPGTLMIEPTESESK 955
+PVPGTLM+EPTESES
Sbjct: 835 FPVPGTLMVEPTESESL 851
|
This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment [Energy metabolism, Amino acids and amines]. Length = 939 |
| >gnl|CDD|171585 PRK12566, PRK12566, glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 1108 bits (2866), Expect = 0.0
Identities = 486/870 (55%), Positives = 613/870 (70%), Gaps = 12/870 (1%)
Query: 88 SVEALKPSDTFARRHNSATPEDQAKMSELVGLDNLDSLIDATVPKSIRIDSMKFSKFDEG 147
S+ L+ D F RRH +Q M + +G+ + LI+ TVP +IR++ +
Sbjct: 3 SLSQLQEPDAFLRRHLGPDAAEQQAMLDALGVASRAELIEQTVPPAIRLN--RPLDLPAA 60
Query: 148 LTESQMIEHMQKLASMNKVYKSFIGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQ 207
L E + ++ A N+V+ S IGMGY+ T P VILRN++ENP WYT YTPYQ EIAQ
Sbjct: 61 LDEQAALARLRGYAEQNQVWTSLIGMGYHGTVTPTVILRNVLENPGWYTAYTPYQPEIAQ 120
Query: 208 GRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQ 267
GRLE+LLNFQ M DLTGL ++NASLLDE TAAAEAMA+ + K K F + +CHPQ
Sbjct: 121 GRLEALLNFQQMTIDLTGLDLANASLLDEATAAAEAMALAKRVAKSKSNRFFVDEHCHPQ 180
Query: 268 TIDICITRADGFDIKVVVSDLKDIDYKSGDVCGVLVQYPGTEGEVLDYGDFIKNAHANGV 327
T+ + TRA+GF ++VV + ++ + V G L+QYP T GE+ D I H
Sbjct: 181 TLSVLRTRAEGFGFELVVDAVDNL--AAHAVFGALLQYPDTHGEIRDLRPLIDQLHGQQA 238
Query: 328 KVVMATDLLALTILKPPGELGADIVVGSAQRFGVPMGYGGPHAAFLATSQEYKRMMPGRI 387
+A DLL+L +L PPGELGAD+V+GS QRFGVPMGYGGPHAA+ A +YKR MPGRI
Sbjct: 239 LACVAADLLSLLVLTPPGELGADVVLGSTQRFGVPMGYGGPHAAYFACRDDYKRAMPGRI 298
Query: 388 VGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIA 447
+GVS D+ G ALR+A+QTREQHIRR+KA SNICTAQ LLAN+A YAVYHGPEGLK IA
Sbjct: 299 IGVSRDARGNTALRMALQTREQHIRREKANSNICTAQVLLANIAGFYAVYHGPEGLKRIA 358
Query: 448 QRVHGLAGTFALGLKKLGTVEVQGLPFFDTVKVKCADAH-AIASAAYKIEMNLRVVDSNT 506
QRVH L A GL+ G + FFDT+ ++ A AI +A +NLR++
Sbjct: 359 QRVHRLTAILAAGLEAKGIKRLNR-HFFDTLTLEVGGAQAAIIESAEAARINLRILGRGR 417
Query: 507 VTASFDETTTLEDVDKLFIVFAGGKSVPFTAASLAEEVETAIPSGLTRESPYLTHPVFNK 566
+ S DET V +LF +F G AA + IP+ L R + YL HPVFN
Sbjct: 418 LGVSLDETCDEATVARLFDIFLGADHGLDVAALDQGALAEGIPAVLQRRTAYLQHPVFNA 477
Query: 567 YHTEHELLRYIHLLQSKELSLCHSMIPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQ 626
+H+E E+LRY+ L++K+L+L SMIPLGSCTMKLNAT+EM+P+TWP FA +HPFAP +Q
Sbjct: 478 HHSETEMLRYLKQLENKDLALNQSMIPLGSCTMKLNATSEMIPITWPEFAQLHPFAPREQ 537
Query: 627 AQGYQEMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIP 686
A+GY+ M + L WLC ITGFD+ +QPN+GA GEYAGL+ IR YH++RG R++C+IP
Sbjct: 538 AEGYRAMIDELEAWLCAITGFDAICMQPNSGAQGEYAGLLAIRRYHRSRGQSQRDICLIP 597
Query: 687 VSAHGTNPATAAMCGMKIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPSTHGVYE 746
SAHGTNPA+A M GM++V V D GN+++++L+ A A D LS LM+TYPSTHGVYE
Sbjct: 598 SSAHGTNPASAQMAGMRVVIVECDPDGNVDLDDLKAKAAAAGDRLSCLMITYPSTHGVYE 657
Query: 747 EGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIGADVCHLNLHKTFCIPHGGGGPGM 806
EGI EIC+++H +GGQVYMDGAN+NAQVGL P IGADV H+NLHKTFCIPHGGGGPGM
Sbjct: 658 EGIREICEVVHQHGGQVYMDGANLNAQVGLARPADIGADVSHMNLHKTFCIPHGGGGPGM 717
Query: 807 GPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSK 866
GPIGV+ HLAPF+ +HPVV G P P G ++AAPWGSA ILPIS+ YIAMMG +
Sbjct: 718 GPIGVRAHLAPFVANHPVVPVEG-PDPNN----GAVSAAPWGSASILPISWMYIAMMGPQ 772
Query: 867 GLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKR 926
L +AS++AIL+ANY+A +L +P+L+RG N VAHE I+DLR LK GI EDVAKR
Sbjct: 773 -LADASEVAILSANYLANQLGGAFPVLYRGRNERVAHECILDLRPLKAQTGISEEDVAKR 831
Query: 927 LMDYGFHGPTMSWPVPGTLMIEPTESESKS 956
LMDYGFH PTMS+PVPGTLM+EPTESESK+
Sbjct: 832 LMDYGFHAPTMSFPVPGTLMVEPTESESKA 861
|
Length = 954 |
| >gnl|CDD|216983 pfam02347, GDC-P, Glycine cleavage system P-protein | Back alignment and domain information |
|---|
Score = 739 bits (1909), Expect = 0.0
Identities = 269/431 (62%), Positives = 321/431 (74%), Gaps = 5/431 (1%)
Query: 100 RRHNSATPEDQAKMSELVGLDNLDSLIDATVPKSIRIDSMKFSKFDEGLTESQMIEHMQK 159
RRH + +Q +M +GL +LD LIDATVP +IR+ + +E +M+ ++
Sbjct: 1 RRHIGPSEAEQQEMLSTIGLSSLDDLIDATVPANIRLKKPL--QLPAPKSEYEMLAELEA 58
Query: 160 LASMNKVYKSFIGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTM 219
+AS NK+YKSFIGMGYY+T +P VILRNI+ENP WYTQYTPYQ EI+QGRLE+LLNFQTM
Sbjct: 59 IASKNKIYKSFIGMGYYDTIIPAVILRNILENPEWYTQYTPYQPEISQGRLEALLNFQTM 118
Query: 220 IADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGF 279
+ DLTGL ++NASLLDEGTAAAEAMA+ I KGKKK F++ +CHPQT+D+ TRA GF
Sbjct: 119 VCDLTGLDVANASLLDEGTAAAEAMALAARISKGKKKKFVVDKDCHPQTLDVLRTRAKGF 178
Query: 280 DIKVVVSDLKDIDY-KSGDVCGVLVQYPGTEGEVLDYGDFIKNAHANGVKVVMATDLLAL 338
I++V DL + + GDV GVLVQYP TEG + DY + I+ AH +G VV+A DLLAL
Sbjct: 179 GIEIVEVDLTEEGFSDEGDVFGVLVQYPNTEGRIEDYKELIEIAHQHGSLVVVAADLLAL 238
Query: 339 TILKPPGELGADIVVGSAQRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKP 398
TILKPPGE GADIVVGSAQRFGVPMGYGGPHA F A +E KR MPGRIVGVS D++GK
Sbjct: 239 TILKPPGEFGADIVVGSAQRFGVPMGYGGPHAGFFAVKEELKRKMPGRIVGVSKDANGKR 298
Query: 399 ALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFA 458
ALR+A+QTREQHIRRDKATSNICTAQALLANMAAMYAVYHGP+GLK IA+R+H L A
Sbjct: 299 ALRLALQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPKGLKEIARRIHSLTLYLA 358
Query: 459 LGLKKLGTVEVQGLPFFDTVKVKCAD--AHAIASAAYKIEMNLRVVDSNTVTASFDETTT 516
GLKKL E+ FFDT+K+ D A + A K +NLR VD TV + DETTT
Sbjct: 359 KGLKKLAGHELDHDHFFDTLKITVEDRAAEELLKRAEKGGINLRYVDLGTVGIALDETTT 418
Query: 517 LEDVDKLFIVF 527
EDVD L VF
Sbjct: 419 KEDVDALLKVF 429
|
This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalyzed by this protein is:- Glycine + lipoylprotein <=> S-aminomethyldihydrolipoylprotein + CO2. Length = 429 |
| >gnl|CDD|223935 COG1003, GcvP, Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 689 bits (1780), Expect = 0.0
Identities = 245/435 (56%), Positives = 303/435 (69%), Gaps = 24/435 (5%)
Query: 541 AEEVETAIPSGLTRES------------PYLTHPVFNKY-----HTEHELLRYIHLLQSK 583
+ + + L+R YL HPVF +Y H+E E++R+ L K
Sbjct: 1 QAKWDEPLIFELSRTGRTGYSLPEQVVEEYLPHPVFRRYPPLPEHSETEMVRHYTRLSQK 60
Query: 584 ELSLCHSMIPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCT 643
+L++ MIPLGSCTMKLN EM P TWP FANIHPF P +Q QGY E+ L EWL
Sbjct: 61 DLAVDRGMIPLGSCTMKLNPKAEMKPATWPEFANIHPFQPEEQVQGYLELIYELQEWLKE 120
Query: 644 ITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMK 703
ITG D+ SLQPNAGA GEYAGL+ IRAYH++RG+ HRN+C+IP SAHGTNPA+AAM G K
Sbjct: 121 ITGMDAVSLQPNAGAQGEYAGLLAIRAYHESRGEGHRNICLIPDSAHGTNPASAAMAGFK 180
Query: 704 IVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQV 763
+V V D GN+++++LR AE DNL+ LM+T PST GV+EE I EIC+I+H+ GGQV
Sbjct: 181 VVVVKCDENGNVDLDDLRAKAE---DNLAALMITNPSTLGVFEEDIREICEIVHEAGGQV 237
Query: 764 YMDGANMNAQVGLTSPGYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHP 823
Y DGAN+NA VGL PG +G DV HLNLHKTFCIPHGGGGPG GP+GVK HLAPFLP
Sbjct: 238 YYDGANLNAIVGLARPGDMGFDVVHLNLHKTFCIPHGGGGPGAGPVGVKAHLAPFLPGPV 297
Query: 824 VVSTGGIPAPEKSQP-LGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYM 882
V G + ++AAP+GSA ILPI++ YI MMG+ GL +AS++A+LNANY+
Sbjct: 298 VYHDVGEYRLDYDGKKSIGVSAAPYGSASILPIAWAYIRMMGADGLKQASEVAVLNANYI 357
Query: 883 AKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWP-- 940
A+RL+ +YP+ + G N VAHE I+D R LK G+ DVAKRL+DYGFH PTM +P
Sbjct: 358 ARRLKGYYPVPYTGEN-RVAHECILDARPLKKETGVRALDVAKRLLDYGFHAPTMYFPLI 416
Query: 941 VPGTLMIEPTESESK 955
V GTLMIEPTESESK
Sbjct: 417 VAGTLMIEPTESESK 431
|
Length = 496 |
| >gnl|CDD|223480 COG0403, GcvP, Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 635 bits (1641), Expect = 0.0
Identities = 242/446 (54%), Positives = 309/446 (69%), Gaps = 8/446 (1%)
Query: 92 LKPSDTFARRHNSATPEDQAKMSELVGLDNLDSLIDATVPKSIRIDSMKFSKFDEGLTES 151
L+P D F RH + DQ +M +G+ +LD L +P SIR + L+E
Sbjct: 1 LEPLDAFMARHIGPSSADQQEMLAAIGVSSLDELFSQDIPPSIRKKLDTLLPLPKPLSEY 60
Query: 152 QMIEHMQKLASMNKVYKSFIGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLE 211
+ + ++++AS NKV+ SFIG GYY+T+ PPVILRNI+ENP WYT YTPYQ EI+QGRLE
Sbjct: 61 EALAELKEIASKNKVFTSFIGAGYYDTYTPPVILRNILENPEWYTAYTPYQPEISQGRLE 120
Query: 212 SLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDI 271
+L FQT++ADLTGL ++NAS+LDE TAAAEAM M + K K+ F++ + HPQT+D+
Sbjct: 121 ALFEFQTLVADLTGLDVANASMLDEATAAAEAMLMAKRVTKKKRNKFLVPKDVHPQTLDV 180
Query: 272 CITRADGFDIKVVVSDLKDID----YKSGDVCGVLVQYPGTEG-EVLDYGDFIKNAHANG 326
TRA+G I++ V D D+D GDV GVLVQYP T G D I+ AH+ G
Sbjct: 181 LRTRAEGLGIEIEVVDADDLDDLESADDGDVFGVLVQYPNTFGIVEEDLRALIEAAHSAG 240
Query: 327 VKVVMATDLLALTILKPPGELGADIVVGSAQRFGVPMGYGGPHAAFLATSQEYKRMMPGR 386
V++A D LAL +LKPPGE GADIVVGSAQRFGVPMG+GGPHA + A E+KR MPGR
Sbjct: 241 ALVIVAADPLALGLLKPPGEFGADIVVGSAQRFGVPMGFGGPHAGYFAVKDEFKRQMPGR 300
Query: 387 IVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTI 446
+VGVS+D++GK A R+A+QTREQHIRR+KATSNICT QALLA A+MYAVYHGP+GLK I
Sbjct: 301 LVGVSVDAAGKRAFRLALQTREQHIRREKATSNICTNQALLALAASMYAVYHGPQGLKEI 360
Query: 447 AQRVHGLAGTFALGLKKLGT-VEVQGLPFFDT--VKVKCADAHAIASAAYKIEMNLRVVD 503
A+R+H LA A GLK++G VE+ FFDT V+V A A+ +AA +NLR VD
Sbjct: 361 AERIHRLAAYLAAGLKEIGAGVELVFDHFFDTFTVRVPEEVAEALLAAAIAGGINLRRVD 420
Query: 504 SNTVTASFDETTTLEDVDKLFIVFAG 529
++TV + ETTT ED+D L F G
Sbjct: 421 ADTVLIALTETTTKEDIDALVAAFGG 446
|
Length = 450 |
| >gnl|CDD|235292 PRK04366, PRK04366, glycine dehydrogenase subunit 2; Validated | Back alignment and domain information |
|---|
Score = 487 bits (1257), Expect = e-163
Identities = 195/438 (44%), Positives = 266/438 (60%), Gaps = 31/438 (7%)
Query: 529 GGKSVPFTAASLAEEVETAIPSGLTRESPYLTHP-VFNKYHTEHELLR-YIHLLQSKELS 586
G + + E +E+ +P L R+ P P V +E E++R Y L Q K
Sbjct: 15 GRRGYSLPELDVPEVLESLLPEELLRKEP-PELPEV-----SELEVVRHYTRLSQ-KNYG 67
Query: 587 LCHSMIPLGSCTMKLN--ATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTI 644
+ PLGSCTMK N ++ P FA +HP P + QG E+ L EWL I
Sbjct: 68 VDTGFYPLGSCTMKYNPKINEKV--ARLPGFAELHPLQPEETVQGALELMYELQEWLKEI 125
Query: 645 TGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKI 704
TG D+ +LQP AGA GE GL++IRAYH+ARGD R I+P SAHGTNPA+AAM G K+
Sbjct: 126 TGMDAVTLQPAAGAHGELTGLLMIRAYHEARGDTKRTEVIVPDSAHGTNPASAAMAGFKV 185
Query: 705 VSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVY 764
V + ++ G +++E L+ A ++ + LM+T P+T G++E I EI +I+H+ GG +Y
Sbjct: 186 VEIPSNEDGLVDLEALKAAV---GEDTAALMLTNPNTLGLFERNILEIAEIVHEAGGLLY 242
Query: 765 MDGANMNAQVGLTSPGYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPV 824
DGAN+NA +G PG +G DV HLNLHKTF PHGGGGPG GP+GVK+ LAPFLP PV
Sbjct: 243 YDGANLNAILGKARPGDMGFDVVHLNLHKTFSTPHGGGGPGSGPVGVKEELAPFLP-VPV 301
Query: 825 VSTGG-----IPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNA 879
V G KS +G + A +G+ +L +Y YI +G++GL E S+ A+LNA
Sbjct: 302 VEKDGDRYRLDYDRPKS--IGRVRAF-YGNFGVLVRAYAYIRSLGAEGLREVSEDAVLNA 358
Query: 880 NYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSW 939
NY+ RL+ Y + + + HEF++ + LK T G+ D+AKRL+DYGFH PT+ +
Sbjct: 359 NYLKARLKDIYDLPY---DRPCMHEFVLSGKKLKET-GVRTLDIAKRLLDYGFHPPTIYF 414
Query: 940 P--VPGTLMIEPTESESK 955
P VP LMIEPTE+ESK
Sbjct: 415 PLIVPEALMIEPTETESK 432
|
Length = 481 |
| >gnl|CDD|99737 cd00613, GDC-P, Glycine cleavage system P-protein, alpha- and beta-subunits | Back alignment and domain information |
|---|
Score = 477 bits (1229), Expect = e-160
Identities = 172/399 (43%), Positives = 228/399 (57%), Gaps = 22/399 (5%)
Query: 150 ESQMIEHMQKLASMNKVYK---SFIGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIA 206
E++++ H+++LAS NK SF+G G Y + P VI RNI+EN +YT YTPYQ EI+
Sbjct: 1 ETEVLRHLKRLASKNKALDQSMSFLGSGTYKHNPPAVIKRNILEN-EFYTAYTPYQPEIS 59
Query: 207 QGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHP 266
QGRL++L QTM+ +LTG+ ++NASL DE TAAAEA + K+ ++ + HP
Sbjct: 60 QGRLQALFELQTMLCELTGMDVANASLQDEATAAAEAAGLAAIRAYHKRNKVLVPDSAHP 119
Query: 267 QTIDICITRADGFDIKVVV--------SDLKDIDYKSG-DVCGVLVQYPGTEGEVLDY-G 316
+ TR + I+VV DL+ + + +V ++VQYP T G D
Sbjct: 120 TNPAVARTRGEPLGIEVVEVPSDEGGTVDLEALKEEVSEEVAALMVQYPNTLGVFEDLIK 179
Query: 317 DFIKNAHANGVKVVMATDLLALTILKPPGELGADIVVGSAQRFGVPMGYGGPHAAFLATS 376
+ AH+ G V + D L LT LKPPGE GADIVVG+ Q+ GVP G GGP A F A
Sbjct: 180 EIADIAHSAGALVYVDGDNLNLTGLKPPGEYGADIVVGNLQKTGVPHGGGGPGAGFFAVK 239
Query: 377 QEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAV 436
+E R +PGR+VGV+ D+ G A R+A+QTREQHIRR+KATSNICT QALLA MAAMY V
Sbjct: 240 KELVRFLPGRLVGVTKDAEGNRAFRLALQTREQHIRREKATSNICTGQALLALMAAMYIV 299
Query: 437 YHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDTVKVKCADAHAIAS----AA 492
Y GPEGLK IA+R H A A LK++G V PFF ++ + I + A
Sbjct: 300 YLGPEGLKEIAERAHLNANYLAKRLKEVGGVLPFNGPFFHEFVLRLPPLYGIRAEDLAKA 359
Query: 493 YKIEMNLRVVDS----NTVTASFDETTTLEDVDKLFIVF 527
T+ ET T E++D L
Sbjct: 360 LIDGGFHAPTMYLPVDGTLMIEPTETETKEELDALLEAL 398
|
This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalysed by this protein is: Glycine + lipoylprotein <=> S-aminomethyldihydrolipoylprotein + CO2. Alpha-beta-type dimers associate to form an alpha(2)beta(2) tetramer, where the alpha- and beta-subunits are structurally similar and appear to have arisen by gene duplication and subsequent divergence with a loss of one active site. The members of this CD are widely dispersed among all three forms of cellular life. Length = 398 |
| >gnl|CDD|99737 cd00613, GDC-P, Glycine cleavage system P-protein, alpha- and beta-subunits | Back alignment and domain information |
|---|
Score = 467 bits (1204), Expect = e-157
Identities = 164/408 (40%), Positives = 215/408 (52%), Gaps = 42/408 (10%)
Query: 570 EHELLRYIHLLQSKELSLCHSMIPLGSCTMKLNATTEMMPVTWPS-FANIHPFAPADQAQ 628
E E+LR++ L SK +L SM LGS T K N + + F + + +Q
Sbjct: 1 ETEVLRHLKRLASKNKALDQSMSFLGSGTYKHNPPAVIKRNILENEFYTAYTPYQPEISQ 60
Query: 629 GYQEMFNNLGEWLCTITGFD--SFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIP 686
G + L LC +TG D + SLQ A AA E AGL IRAYH RN ++P
Sbjct: 61 GRLQALFELQTMLCELTGMDVANASLQDEATAAAEAAGLAAIRAYH------KRNKVLVP 114
Query: 687 VSAHGTNPATAAMC----GMKIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPSTH 742
SAH TNPA A G+++V V +D G +++E L+ E + ++ LMV YP+T
Sbjct: 115 DSAHPTNPAVARTRGEPLGIEVVEVPSDEGGTVDLEALK---EEVSEEVAALMVQYPNTL 171
Query: 743 GVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIGADVCHLNLHKTFCIPHGGG 802
GV+E+ I EI I H G VY+DG N+N GL PG GAD+ NL KT +PHGGG
Sbjct: 172 GVFEDLIKEIADIAHSAGALVYVDGDNLNLT-GLKPPGEYGADIVVGNLQKTG-VPHGGG 229
Query: 803 GPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAA---------------PW 847
GPG G VKK L FLP V T + +A
Sbjct: 230 GPGAGFFAVKKELVRFLPGRLVGVTKDA----EGNRAFRLALQTREQHIRREKATSNICT 285
Query: 848 GSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIV 907
G AL+ ++ YI +G +GL E ++ A LNANY+AKRL++ +L NG HEF++
Sbjct: 286 GQALLALMAAMYIVYLGPEGLKEIAERAHLNANYLAKRLKEVGGVL--PFNGPFFHEFVL 343
Query: 908 DLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESK 955
L L GI ED+AK L+D GFH PTM PV GTLMIEPTE+E+K
Sbjct: 344 RLPPL---YGIRAEDLAKALIDGGFHAPTMYLPVDGTLMIEPTETETK 388
|
This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalysed by this protein is: Glycine + lipoylprotein <=> S-aminomethyldihydrolipoylprotein + CO2. Alpha-beta-type dimers associate to form an alpha(2)beta(2) tetramer, where the alpha- and beta-subunits are structurally similar and appear to have arisen by gene duplication and subsequent divergence with a loss of one active site. The members of this CD are widely dispersed among all three forms of cellular life. Length = 398 |
| >gnl|CDD|234769 PRK00451, PRK00451, glycine dehydrogenase subunit 1; Validated | Back alignment and domain information |
|---|
Score = 366 bits (941), Expect = e-117
Identities = 166/437 (37%), Positives = 249/437 (56%), Gaps = 25/437 (5%)
Query: 106 TPEDQAKMSELVGLDNLDSLIDATVPKSIRIDSMKFSKFDEGLTESQMIEHMQKLASMNK 165
T ED +M + +G+ ++D L +P+ +R+ GL+E +++ H+++LA+ NK
Sbjct: 8 TEEDIREMLDAIGVKSIDELFAD-IPEELRLKR--PLDLPPGLSEMELLRHLRELAAKNK 64
Query: 166 V---YKSFIGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIAD 222
Y SF+G G Y+ ++P V+ +I+ +YT YTPYQ EI+QG L+++ +QTMI +
Sbjct: 65 TAEEYPSFLGAGAYDHYIPAVV-DHIISRSEFYTAYTPYQPEISQGTLQAIFEYQTMICE 123
Query: 223 LTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIK 282
LTG+ ++NAS+ D TA AEA M I K KK +++ HP+ ++ T G I+
Sbjct: 124 LTGMDVANASMYDGATALAEAALMAVRITKRKK--VLVSGAVHPEYREVLKTYLKGQGIE 181
Query: 283 VV-------VSDLKDIDYK-SGDVCGVLVQYPGTEGEVLDYGDFIKNAHANGVKVVMATD 334
VV V+DL+ ++ D V+VQYP G + D + + AHA G ++ D
Sbjct: 182 VVEVPYEDGVTDLEALEAAVDDDTAAVVVQYPNFFGVIEDLEEIAEIAHAGGALFIVGVD 241
Query: 335 LLALTILKPPGELGADIVVGSAQRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDS 394
++L +LKPPGE GADIVVG Q G+P+ +GGP+ F AT ++ R MPGR+VG ++D+
Sbjct: 242 PVSLGLLKPPGEYGADIVVGEGQPLGIPLSFGGPYLGFFATRKKLVRQMPGRLVGETVDA 301
Query: 395 SGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLA 454
GK + +Q REQHIRR+KATSNICT QAL A AA+Y GPEGL+ +A++ H A
Sbjct: 302 DGKRGFVLTLQAREQHIRREKATSNICTNQALNALAAAIYMSLLGPEGLRELAEQNHQKA 361
Query: 455 GTFALGLKKLGTVEVQGLPFFDTVKVKC-ADAHAIASA--AYKIE--MNLRVVDS---NT 506
A L ++G VE+ PFF+ V+ A + A I +L N
Sbjct: 362 HYLAERLAEIGGVELFDGPFFNEFVVRLPKPAEEVNEALLEKGILGGYDLGRYYPELGNH 421
Query: 507 VTASFDETTTLEDVDKL 523
+ E T ED+D L
Sbjct: 422 LLVCVTEKRTKEDIDAL 438
|
Length = 447 |
| >gnl|CDD|99742 cd01494, AAT_I, Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes | Back alignment and domain information |
|---|
Score = 63.9 bits (156), Expect = 1e-11
Identities = 41/185 (22%), Positives = 70/185 (37%), Gaps = 22/185 (11%)
Query: 634 FNNLGEWLCTITG-FDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGT 692
L E L + + ++ +G A L+ + I+ + HG+
Sbjct: 2 LEELEEKLARLLQPGNDKAVFVPSGTGANEAALLALLGPGD--------EVIVDANGHGS 53
Query: 693 NP-ATAAMCGMKIVSVGTD--AKGNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGI 749
A + G K V V D G +++ L + + N++ +++T +T G +
Sbjct: 54 RYWVAAELAGAKPVPVPVDDAGYGGLDVAILEELK--AKPNVALIVITPNTTSGGVLVPL 111
Query: 750 DEICKIIHDNGGQVYMDGANMNAQVG--LTSPGYIGADVCHLNLHKTFCIPHGGGGPGMG 807
EI KI + G + +D A+ GADV +LHK GG G G
Sbjct: 112 KEIRKIAKEYGILLLVDAASAGGASPAPGVLIPEGGADVVTFSLHKNL------GGEGGG 165
Query: 808 PIGVK 812
+ VK
Sbjct: 166 VVIVK 170
|
PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), and D-amino acid superfamily (fold type IV) and Glycogen phophorylase family (fold type V). Length = 170 |
| >gnl|CDD|216983 pfam02347, GDC-P, Glycine cleavage system P-protein | Back alignment and domain information |
|---|
Score = 65.8 bits (161), Expect = 5e-11
Identities = 104/443 (23%), Positives = 172/443 (38%), Gaps = 67/443 (15%)
Query: 539 SLAEEVETAIPSGL-TRESPYLTHPVFNKYHTEHELLRYIHLLQSKELSLCHSMIPLGSC 597
SL + ++ +P+ + ++ L P +E+E+L + + SK + S I +G
Sbjct: 22 SLDDLIDATVPANIRLKKPLQLPAPK-----SEYEMLAELEAIASKN-KIYKSFIGMGYY 75
Query: 598 TMKLNATTEMMPVTWPSFANIHPFAP--ADQAQGYQEMFNNLGEWLCTITGFD--SFSLQ 653
+ A + P + + P + +QG E N +C +TG D + SL
Sbjct: 76 DTIIPAVILRNILENPEW--YTQYTPYQPEISQGRLEALLNFQTMVCDLTGLDVANASLL 133
Query: 654 PNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKG 713
AA E A + R K + V +P T + T AKG
Sbjct: 134 DEGTAAAE-AMALAARI-SKGKKKK------FVVDKD-CHPQTLDVLR-------TRAKG 177
Query: 714 -NINIEELRKAAE--ANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANM 770
I I E+ E ++ ++ ++V YP+T G E+ E+ +I H +G V + A++
Sbjct: 178 FGIEIVEVDLTEEGFSDEGDVFGVLVQYPNTEGRIED-YKELIEIAHQHGSLVVV-AADL 235
Query: 771 NAQVGLTSPGYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPV---VST 827
A L PG GAD+ + + F +P G GGP G VK+ L +P V
Sbjct: 236 LALTILKPPGEFGADIV-VGSAQRFGVPMGYGGPHAGFFAVKEELKRKMPGRIVGVSKDA 294
Query: 828 GGIPA-------------PEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKI 874
G A +K+ I A AL+ ++ Y G KGL E ++
Sbjct: 295 NGKRALRLALQTREQHIRRDKAT--SNICTA---QALLANMAAMYAVYHGPKGLKEIARR 349
Query: 875 AILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHG 934
Y+AK L+K H F +++ A E++ KR G
Sbjct: 350 IHSLTLYLAKGLKKLAGHELDHD-----HFFDTLKITVEDRAA---EELLKRAEK---GG 398
Query: 935 PTMSWPVPGTLMIEPTESESKSW 957
+ + GT+ I E+ +K
Sbjct: 399 INLRYVDLGTVGIALDETTTKED 421
|
This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalyzed by this protein is:- Glycine + lipoylprotein <=> S-aminomethyldihydrolipoylprotein + CO2. Length = 429 |
| >gnl|CDD|234769 PRK00451, PRK00451, glycine dehydrogenase subunit 1; Validated | Back alignment and domain information |
|---|
Score = 62.8 bits (154), Expect = 4e-10
Identities = 65/266 (24%), Positives = 108/266 (40%), Gaps = 69/266 (25%)
Query: 701 GMKIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNG 760
G+++V V + G ++E L A + D+ + ++V YP+ GV E+ ++EI +I H G
Sbjct: 179 GIEVVEVPYED-GVTDLEALEAAVD---DDTAAVVVQYPNFFGVIED-LEEIAEIAHAGG 233
Query: 761 GQVYMDGANMNAQVGLTSPGYIGAD-VC--------HLNLHKTFCIPHGGGGPGMGPIGV 811
+ G + + L PG GAD V L+ GGP +G
Sbjct: 234 ALFIV-GVDPVSLGLLKPPGEYGADIVVGEGQPLGIPLSF----------GGPYLGFFAT 282
Query: 812 KKHLAPFLPSHPV---VSTGGIPA-------------PEK-------SQPLGTIAAAPWG 848
+K L +P V V G EK +Q L +AAA
Sbjct: 283 RKKLVRQMPGRLVGETVDADGKRGFVLTLQAREQHIRREKATSNICTNQALNALAAA--- 339
Query: 849 SALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVD 908
Y++++G +GL E ++ A+Y+A+RL + +G +EF+V
Sbjct: 340 ---------IYMSLLGPEGLRELAEQNHQKAHYLAERLAEIG--GVELFDGPFFNEFVVR 388
Query: 909 LRGLKNTAGIEPEDVAKRLMDYGFHG 934
L E+V + L++ G G
Sbjct: 389 LP-------KPAEEVNEALLEKGILG 407
|
Length = 447 |
| >gnl|CDD|223594 COG0520, csdA, Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 58.1 bits (141), Expect = 1e-08
Identities = 58/268 (21%), Positives = 90/268 (33%), Gaps = 44/268 (16%)
Query: 677 DHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKGNINIEELRKAAEANRDNLSTLMV 736
+HH N I+P A G K+ + D G ++++ L K T +V
Sbjct: 120 EHHSN--IVPWQEL------AKRTGAKVRVIPLDDDGLLDLDALEKL-----ITPKTKLV 166
Query: 737 TYPSTHGV--YEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIGADVCHLNLHKT 794
V + EI ++ H++G V +D A A +G D + HK
Sbjct: 167 ALSHVSNVTGTVNPVKEIAELAHEHGALVLVDAAQ-AAGHLPIDVQELGCDFLAFSGHKW 225
Query: 795 FCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPW----GSA 850
P G G + V+K L L P + GG+ T+A P G+
Sbjct: 226 LLGPTGIGV-----LYVRKELLEELE--PFLGGGGMIEYVSRDEGVTLAELPLRFEAGTP 278
Query: 851 LILPI--SYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVN-----GTVAH 903
I + + G+ Y+ + L + + G G V+
Sbjct: 279 NIAGAIGLAAALDYLLEIGMEAIEAHERELTEYLLEGLSELPGVEIYGPPDADRGGIVS- 337
Query: 904 EFIVDLRGLKNTAGIEPEDVAKRLMDYG 931
F V GI P DVA L + G
Sbjct: 338 -FNVK--------GIHPHDVATLLDEKG 356
|
Length = 405 |
| >gnl|CDD|223480 COG0403, GcvP, Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 55.3 bits (134), Expect = 1e-07
Identities = 91/364 (25%), Positives = 139/364 (38%), Gaps = 75/364 (20%)
Query: 627 AQGYQEMFNNLGEWLCTITGFD--SFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCI 684
+QG E + +TG D + S+ A AA E A LM R K + RN +
Sbjct: 115 SQGRLEALFEFQTLVADLTGLDVANASMLDEATAAAE-AMLMAKRV-TKKK----RNKFL 168
Query: 685 IPVSAHGTNPAT-------AAMCGMKIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVT 737
+P H P T A G++I V D ++++L A + ++ ++V
Sbjct: 169 VPKDVH---PQTLDVLRTRAEGLGIEIEVVDAD-----DLDDLESADD---GDVFGVLVQ 217
Query: 738 YPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIGADVCHLNLHKTFCI 797
YP+T G+ EE + + + H G V + A+ A L PG GAD+ + + F +
Sbjct: 218 YPNTFGIVEEDLRALIEAAHSAGALVIV-AADPLALGLLKPPGEFGADIVVGSAQR-FGV 275
Query: 798 PHGGGGPGMGPIGVKKHLAPFLPSHPV---VSTGGIPA-------------PEK------ 835
P G GGP G VK +P V V G A EK
Sbjct: 276 PMGFGGPHAGYFAVKDEFKRQMPGRLVGVSVDAAGKRAFRLALQTREQHIRREKATSNIC 335
Query: 836 -SQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILF 894
+Q L +AA+ Y G +GL E ++ A Y+A L++
Sbjct: 336 TNQALLALAAS------------MYAVYHGPQGLKEIAERIHRLAAYLAAGLKE-IGAGV 382
Query: 895 RGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPV-PGTLMIEPTESE 953
V F V + PE+VA+ L+ G V T++I TE+
Sbjct: 383 ELVFDHFFDTFTVRV----------PEEVAEALLAAAIAGGINLRRVDADTVLIALTETT 432
Query: 954 SKSW 957
+K
Sbjct: 433 TKED 436
|
Length = 450 |
| >gnl|CDD|99743 cd06450, DOPA_deC_like, DOPA decarboxylase family | Back alignment and domain information |
|---|
Score = 49.5 bits (119), Expect = 5e-06
Identities = 36/165 (21%), Positives = 63/165 (38%), Gaps = 26/165 (15%)
Query: 623 PADQAQGYQEMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAG------LMVIRAY-HKAR 675
D++ EM + WL + G P+ A G + L+ + A +AR
Sbjct: 29 TWDESPAATEMEAEVVNWLAKLFGL------PSEDADGVFTSGGSESNLLALLAARDRAR 82
Query: 676 GDH--------HRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKGNINIEELRKA-AEA 726
+ V + AH + AA +K+ V D G ++ E L A E
Sbjct: 83 KRLKAGGGRGIDKLVIVCSDQAHVSVEKAAAYLDVKVRLVPVDEDGRMDPEALEAAIDED 142
Query: 727 NRDNLSTLMV--TYPST-HGVYEEGIDEICKIIHDNGGQVYMDGA 768
+ L+ +MV T +T G + ++EI + +++D A
Sbjct: 143 KAEGLNPIMVVATAGTTDTGAIDP-LEEIADLAEKYDLWLHVDAA 186
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine. Length = 345 |
| >gnl|CDD|223154 COG0076, GadB, Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 3e-04
Identities = 43/249 (17%), Positives = 82/249 (32%), Gaps = 47/249 (18%)
Query: 664 GLMVIRAY------HKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKGN-IN 716
L+ R ++ + + +AH + A G+ + V T I+
Sbjct: 135 ALLAARERWRKRALAESGKPGGKPNIVCSETAHFSFEKAARYLGLGLRRVPTVPTDYRID 194
Query: 717 IEELRKAAEANRDN--LSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQV 774
++ L +A + N + T G ++ I+E+ I + G +++D A +
Sbjct: 195 VDALEEAIDENTIGGVVVGTAGTTD--TGSIDD-IEELADIAEEYGIWLHVDAAFGGFLL 251
Query: 775 GLTSP------GYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKK---------HLAPFL 819
P G G D ++ HK P G G + + +L
Sbjct: 252 PFLEPDGRWDFGLEGVDSITVDGHKYGLAPIGCGV-----VLFRDEEALRRILIFADYYL 306
Query: 820 PSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNA 879
P + + G A A + A + +G +G + + A
Sbjct: 307 PGGGIPNFT-----ILGSRPGRQALALY--ANLR--------RLGREGYRKLLDRTLELA 351
Query: 880 NYMAKRLEK 888
Y+A+ LEK
Sbjct: 352 RYLAEELEK 360
|
Length = 460 |
| >gnl|CDD|197612 smart00263, LYZ1, Alpha-lactalbumin / lysozyme C | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 5e-04
Identities = 21/85 (24%), Positives = 36/85 (42%), Gaps = 10/85 (11%)
Query: 629 GYQEMFNNLGEWLCTI---TGFDSFSLQPNAGAAGEYAGLMVIRAY---HKARGDHHRNV 682
GY+ +L W+C +G+++ + N G + +Y G+ I + + + N
Sbjct: 19 GYRG--ISLANWVCLAFHESGYNTQATNYNNGGSTDY-GIFQINSKYWCNDGKTPGSVNA 75
Query: 683 CIIPVSAHGTNPAT-AAMCGMKIVS 706
C I S + T C KIVS
Sbjct: 76 CGISCSKLLDDDITDDVKCAKKIVS 100
|
Length = 127 |
| >gnl|CDD|223935 COG1003, GcvP, Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 0.002
Identities = 73/336 (21%), Positives = 130/336 (38%), Gaps = 59/336 (17%)
Query: 145 DEGLTESQMIEHMQKLASMN-KVYKSFIGMGY----YNTHVPPVILRNIMENPAWYTQYT 199
+E++M+ H +L+ + V + I +G N PA + ++
Sbjct: 42 LPEHSETEMVRHYTRLSQKDLAVDRGMIPLGSCTMKLNP--------KAEMKPATWPEFA 93
Query: 200 ---PYQ-AEIAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMC------NN 249
P+Q E QG LE + Q + ++TG M SL A E + +
Sbjct: 94 NIHPFQPEEQVQGYLELIYELQEWLKEITG--MDAVSLQPNAGAQGEYAGLLAIRAYHES 151
Query: 250 IQKGKKKTFIIASNCH---PQTIDICITRADGFDIKVVVS------DLKDIDYKSGD-VC 299
+G + +I + H P + + GF + VV DL D+ K+ D +
Sbjct: 152 RGEGHRNICLIPDSAHGTNPASAAMA-----GFKVVVVKCDENGNVDLDDLRAKAEDNLA 206
Query: 300 GVLVQYPGTEG----EVLDYGDFIKNAHANGVKVVM-ATDLLALTILKPPGELGADIV-V 353
+++ P T G ++ + + + H G +V +L A+ L PG++G D+V +
Sbjct: 207 ALMITNPSTLGVFEEDIREICEIV---HEAGGQVYYDGANLNAIVGLARPGDMGFDVVHL 263
Query: 354 GSAQRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRR 413
+ F +P G GGP A + +PG +V G+ L ++ I
Sbjct: 264 NLHKTFCIPHGGGGPGAGPVGVKAHLAPFLPGPVV---YHDVGEYRLD---YDGKKSIGV 317
Query: 414 DKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQR 449
A A + +A Y G +GLK ++
Sbjct: 318 SAAP----YGSASILPIAWAYIRMMGADGLKQASEV 349
|
Length = 496 |
| >gnl|CDD|223594 COG0520, csdA, Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 0.003
Identities = 58/247 (23%), Positives = 83/247 (33%), Gaps = 58/247 (23%)
Query: 310 GEVLDYGDFIKNAHANGVKVV---------MATDLLALTILKPPGELGADIVVGSA-QRF 359
G V + + AH +G V+ + D+ ELG D + S +
Sbjct: 176 GTVNPVKEIAELAHEHGALVLVDAAQAAGHLPIDV---------QELGCDFLAFSGHKWL 226
Query: 360 GVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHI---RRDKA 416
P G G L +E + + G G V+ R +A
Sbjct: 227 LGPTGIG-----VLYVRKELLEELEPFLGG------GGMIEYVSRDEGVTLAELPLRFEA 275
Query: 417 -TSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFF 475
T NI A A+ AA+ Y G++ I L GL +L VE+ G P
Sbjct: 276 GTPNI--AGAIGLA-AAL--DYLLEIGMEAIEAHERELTEYLLEGLSELPGVEIYGPPDA 330
Query: 476 D-----TVKVKCADAHAIAS--AAYKIE-----------MNLRVVDSNTVTASFDETTTL 517
D + VK H +A+ I L VD+ T+ AS T
Sbjct: 331 DRGGIVSFNVKGIHPHDVATLLDEKGIAVRAGHHCAQPLHRLLGVDA-TIRASLHLYNTE 389
Query: 518 EDVDKLF 524
EDVD+L
Sbjct: 390 EDVDRLL 396
|
Length = 405 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 985 | |||
| KOG2040 | 1001 | consensus Glycine dehydrogenase (decarboxylating) | 100.0 | |
| PRK12566 | 954 | glycine dehydrogenase; Provisional | 100.0 | |
| TIGR00461 | 939 | gcvP glycine dehydrogenase (decarboxylating). This | 100.0 | |
| PLN02414 | 993 | glycine dehydrogenase (decarboxylating) | 100.0 | |
| PRK05367 | 954 | glycine dehydrogenase; Provisional | 100.0 | |
| COG0403 | 450 | GcvP Glycine cleavage system protein P (pyridoxal- | 100.0 | |
| PF02347 | 429 | GDC-P: Glycine cleavage system P-protein; InterPro | 100.0 | |
| COG1003 | 496 | GcvP Glycine cleavage system protein P (pyridoxal- | 100.0 | |
| PF02347 | 429 | GDC-P: Glycine cleavage system P-protein; InterPro | 100.0 | |
| PRK00451 | 447 | glycine dehydrogenase subunit 1; Validated | 100.0 | |
| TIGR00461 | 939 | gcvP glycine dehydrogenase (decarboxylating). This | 100.0 | |
| PRK04366 | 481 | glycine dehydrogenase subunit 2; Validated | 100.0 | |
| COG0403 | 450 | GcvP Glycine cleavage system protein P (pyridoxal- | 100.0 | |
| PRK12566 | 954 | glycine dehydrogenase; Provisional | 100.0 | |
| PRK04366 | 481 | glycine dehydrogenase subunit 2; Validated | 100.0 | |
| PRK05367 | 954 | glycine dehydrogenase; Provisional | 100.0 | |
| PLN02414 | 993 | glycine dehydrogenase (decarboxylating) | 100.0 | |
| COG1003 | 496 | GcvP Glycine cleavage system protein P (pyridoxal- | 100.0 | |
| PRK00451 | 447 | glycine dehydrogenase subunit 1; Validated | 100.0 | |
| cd00613 | 398 | GDC-P Glycine cleavage system P-protein, alpha- an | 100.0 | |
| KOG2040 | 1001 | consensus Glycine dehydrogenase (decarboxylating) | 100.0 | |
| cd00613 | 398 | GDC-P Glycine cleavage system P-protein, alpha- an | 100.0 | |
| COG0520 | 405 | csdA Selenocysteine lyase/Cysteine desulfurase [Po | 100.0 | |
| COG1104 | 386 | NifS Cysteine sulfinate desulfinase/cysteine desul | 99.97 | |
| COG0520 | 405 | csdA Selenocysteine lyase/Cysteine desulfurase [Po | 99.97 | |
| PRK09295 | 406 | bifunctional cysteine desulfurase/selenocysteine l | 99.96 | |
| PRK13520 | 371 | L-tyrosine decarboxylase; Provisional | 99.96 | |
| PRK10874 | 401 | cysteine sulfinate desulfinase; Provisional | 99.95 | |
| PF00266 | 371 | Aminotran_5: Aminotransferase class-V; InterPro: I | 99.95 | |
| TIGR03392 | 398 | FeS_syn_CsdA cysteine desulfurase, catalytic subun | 99.95 | |
| PLN02855 | 424 | Bifunctional selenocysteine lyase/cysteine desulfu | 99.95 | |
| TIGR01788 | 431 | Glu-decarb-GAD glutamate decarboxylase. This model | 99.95 | |
| COG1104 | 386 | NifS Cysteine sulfinate desulfinase/cysteine desul | 99.95 | |
| TIGR01979 | 403 | sufS cysteine desulfurases, SufS subfamily. This m | 99.94 | |
| PLN03032 | 374 | serine decarboxylase; Provisional | 99.94 | |
| PRK02769 | 380 | histidine decarboxylase; Provisional | 99.94 | |
| TIGR01814 | 406 | kynureninase kynureninase. This model describes ky | 99.94 | |
| TIGR01976 | 397 | am_tr_V_VC1184 cysteine desulfurase family protein | 99.93 | |
| PLN02651 | 364 | cysteine desulfurase | 99.93 | |
| TIGR03812 | 373 | tyr_de_CO2_Arch tyrosine decarboxylase MnfA. Membe | 99.93 | |
| TIGR03402 | 379 | FeS_nifS cysteine desulfurase NifS. Members of thi | 99.93 | |
| cd06453 | 373 | SufS_like Cysteine desulfurase (SufS)-like. This f | 99.93 | |
| PRK09295 | 406 | bifunctional cysteine desulfurase/selenocysteine l | 99.93 | |
| TIGR03392 | 398 | FeS_syn_CsdA cysteine desulfurase, catalytic subun | 99.93 | |
| TIGR01977 | 376 | am_tr_V_EF2568 cysteine desulfurase family protein | 99.93 | |
| PRK13520 | 371 | L-tyrosine decarboxylase; Provisional | 99.92 | |
| PLN02651 | 364 | cysteine desulfurase | 99.92 | |
| PLN02263 | 470 | serine decarboxylase | 99.92 | |
| TIGR03402 | 379 | FeS_nifS cysteine desulfurase NifS. Members of thi | 99.92 | |
| PLN02590 | 539 | probable tyrosine decarboxylase | 99.92 | |
| PRK10874 | 401 | cysteine sulfinate desulfinase; Provisional | 99.92 | |
| PLN02855 | 424 | Bifunctional selenocysteine lyase/cysteine desulfu | 99.92 | |
| COG0076 | 460 | GadB Glutamate decarboxylase and related PLP-depen | 99.92 | |
| PF00266 | 371 | Aminotran_5: Aminotransferase class-V; InterPro: I | 99.92 | |
| TIGR01976 | 397 | am_tr_V_VC1184 cysteine desulfurase family protein | 99.92 | |
| PRK02948 | 381 | cysteine desulfurase; Provisional | 99.92 | |
| TIGR01979 | 403 | sufS cysteine desulfurases, SufS subfamily. This m | 99.92 | |
| cd06453 | 373 | SufS_like Cysteine desulfurase (SufS)-like. This f | 99.91 | |
| KOG1383 | 491 | consensus Glutamate decarboxylase/sphingosine phos | 99.91 | |
| PLN02880 | 490 | tyrosine decarboxylase | 99.91 | |
| COG4992 | 404 | ArgD Ornithine/acetylornithine aminotransferase [A | 99.91 | |
| cd06451 | 356 | AGAT_like Alanine-glyoxylate aminotransferase (AGA | 99.91 | |
| TIGR02006 | 402 | IscS cysteine desulfurase IscS. This model represe | 99.9 | |
| PLN02724 | 805 | Molybdenum cofactor sulfurase | 99.9 | |
| TIGR02006 | 402 | IscS cysteine desulfurase IscS. This model represe | 99.9 | |
| TIGR03403 | 382 | nifS_epsilon cysteine desulfurase, NifS family, ep | 99.9 | |
| TIGR03403 | 382 | nifS_epsilon cysteine desulfurase, NifS family, ep | 99.9 | |
| PTZ00094 | 452 | serine hydroxymethyltransferase; Provisional | 99.9 | |
| PRK13580 | 493 | serine hydroxymethyltransferase; Provisional | 99.9 | |
| COG0075 | 383 | Serine-pyruvate aminotransferase/archaeal aspartat | 99.9 | |
| TIGR01977 | 376 | am_tr_V_EF2568 cysteine desulfurase family protein | 99.9 | |
| PRK02948 | 381 | cysteine desulfurase; Provisional | 99.9 | |
| TIGR03799 | 522 | NOD_PanD_pyr putative pyridoxal-dependent aspartat | 99.9 | |
| cd06450 | 345 | DOPA_deC_like DOPA decarboxylase family. This fami | 99.9 | |
| COG0156 | 388 | BioF 7-keto-8-aminopelargonate synthetase and rela | 99.89 | |
| TIGR03812 | 373 | tyr_de_CO2_Arch tyrosine decarboxylase MnfA. Membe | 99.89 | |
| PLN02409 | 401 | serine--glyoxylate aminotransaminase | 99.89 | |
| COG0112 | 413 | GlyA Glycine/serine hydroxymethyltransferase [Amin | 99.89 | |
| PF00282 | 373 | Pyridoxal_deC: Pyridoxal-dependent decarboxylase c | 99.89 | |
| TIGR01814 | 406 | kynureninase kynureninase. This model describes ky | 99.89 | |
| PLN02409 | 401 | serine--glyoxylate aminotransaminase | 99.88 | |
| TIGR02326 | 363 | transamin_PhnW 2-aminoethylphosphonate--pyruvate t | 99.88 | |
| PRK03080 | 378 | phosphoserine aminotransferase; Provisional | 99.88 | |
| PRK14012 | 404 | cysteine desulfurase; Provisional | 99.88 | |
| COG0075 | 383 | Serine-pyruvate aminotransferase/archaeal aspartat | 99.88 | |
| PRK02769 | 380 | histidine decarboxylase; Provisional | 99.88 | |
| PLN02271 | 586 | serine hydroxymethyltransferase | 99.87 | |
| TIGR02539 | 370 | SepCysS Sep-tRNA:Cys-tRNA synthase. Aminoacylation | 99.87 | |
| KOG1549 | 428 | consensus Cysteine desulfurase NFS1 [Amino acid tr | 99.87 | |
| cd06451 | 356 | AGAT_like Alanine-glyoxylate aminotransferase (AGA | 99.87 | |
| TIGR03301 | 355 | PhnW-AepZ 2-aminoethylphosphonate aminotransferase | 99.87 | |
| PRK13479 | 368 | 2-aminoethylphosphonate--pyruvate transaminase; Pr | 99.87 | |
| PRK09331 | 387 | Sep-tRNA:Cys-tRNA synthetase; Provisional | 99.87 | |
| TIGR01788 | 431 | Glu-decarb-GAD glutamate decarboxylase. This model | 99.86 | |
| PRK14012 | 404 | cysteine desulfurase; Provisional | 99.86 | |
| TIGR02326 | 363 | transamin_PhnW 2-aminoethylphosphonate--pyruvate t | 99.85 | |
| TIGR01366 | 361 | serC_3 phosphoserine aminotransferase, putative. T | 99.85 | |
| COG3844 | 407 | Kynureninase [Amino acid transport and metabolism] | 99.85 | |
| TIGR03235 | 353 | DNA_S_dndA cysteine desulfurase DndA. This model d | 99.84 | |
| PLN03032 | 374 | serine decarboxylase; Provisional | 99.84 | |
| TIGR03301 | 355 | PhnW-AepZ 2-aminoethylphosphonate aminotransferase | 99.84 | |
| TIGR03531 | 444 | selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium tr | 99.84 | |
| PRK13479 | 368 | 2-aminoethylphosphonate--pyruvate transaminase; Pr | 99.84 | |
| PRK13034 | 416 | serine hydroxymethyltransferase; Reviewed | 99.83 | |
| PRK03080 | 378 | phosphoserine aminotransferase; Provisional | 99.83 | |
| PTZ00094 | 452 | serine hydroxymethyltransferase; Provisional | 99.83 | |
| TIGR03235 | 353 | DNA_S_dndA cysteine desulfurase DndA. This model d | 99.83 | |
| PLN02724 | 805 | Molybdenum cofactor sulfurase | 99.83 | |
| TIGR01822 | 393 | 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A lig | 99.83 | |
| PLN02955 | 476 | 8-amino-7-oxononanoate synthase | 99.83 | |
| KOG1359 | 417 | consensus Glycine C-acetyltransferase/2-amino-3-ke | 99.83 | |
| cd06452 | 361 | SepCysS Sep-tRNA:Cys-tRNA synthase. This family be | 99.82 | |
| PRK05937 | 370 | 8-amino-7-oxononanoate synthase; Provisional | 99.82 | |
| cd00378 | 402 | SHMT Serine-glycine hydroxymethyltransferase (SHMT | 99.82 | |
| TIGR02539 | 370 | SepCysS Sep-tRNA:Cys-tRNA synthase. Aminoacylation | 99.82 | |
| TIGR01822 | 393 | 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A lig | 99.82 | |
| PRK07179 | 407 | hypothetical protein; Provisional | 99.82 | |
| KOG1549 | 428 | consensus Cysteine desulfurase NFS1 [Amino acid tr | 99.82 | |
| COG0160 | 447 | GabT 4-aminobutyrate aminotransferase and related | 99.82 | |
| PF00464 | 399 | SHMT: Serine hydroxymethyltransferase; InterPro: I | 99.82 | |
| PLN03226 | 475 | serine hydroxymethyltransferase; Provisional | 99.82 | |
| PRK09331 | 387 | Sep-tRNA:Cys-tRNA synthetase; Provisional | 99.82 | |
| cd00611 | 355 | PSAT_like Phosphoserine aminotransferase (PSAT) fa | 99.82 | |
| PRK05937 | 370 | 8-amino-7-oxononanoate synthase; Provisional | 99.81 | |
| PRK00011 | 416 | glyA serine hydroxymethyltransferase; Reviewed | 99.81 | |
| TIGR03246 | 397 | arg_catab_astC succinylornithine transaminase fami | 99.81 | |
| cd00616 | 352 | AHBA_syn 3-amino-5-hydroxybenzoic acid synthase fa | 99.81 | |
| COG0436 | 393 | Aspartate/tyrosine/aromatic aminotransferase [Amin | 99.81 | |
| TIGR01364 | 349 | serC_1 phosphoserine aminotransferase. This model | 99.81 | |
| PRK05355 | 360 | 3-phosphoserine/phosphohydroxythreonine aminotrans | 99.81 | |
| TIGR01821 | 402 | 5aminolev_synth 5-aminolevulinic acid synthase. Th | 99.81 | |
| TIGR03811 | 608 | tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcu | 99.81 | |
| PRK04073 | 396 | rocD ornithine--oxo-acid transaminase; Provisional | 99.8 | |
| TIGR01821 | 402 | 5aminolev_synth 5-aminolevulinic acid synthase. Th | 99.8 | |
| cd06454 | 349 | KBL_like KBL_like; this family belongs to the pyri | 99.79 | |
| TIGR01437 | 363 | selA_rel uncharacterized pyridoxal phosphate-depen | 99.79 | |
| PLN03227 | 392 | serine palmitoyltransferase-like protein; Provisio | 99.79 | |
| PRK09064 | 407 | 5-aminolevulinate synthase; Validated | 99.79 | |
| PRK13392 | 410 | 5-aminolevulinate synthase; Provisional | 99.79 | |
| PRK00854 | 401 | rocD ornithine--oxo-acid transaminase; Reviewed | 99.79 | |
| PRK07179 | 407 | hypothetical protein; Provisional | 99.79 | |
| PRK13393 | 406 | 5-aminolevulinate synthase; Provisional | 99.79 | |
| PRK03244 | 398 | argD acetylornithine aminotransferase; Provisional | 99.79 | |
| PLN02483 | 489 | serine palmitoyltransferase | 99.79 | |
| PLN02483 | 489 | serine palmitoyltransferase | 99.78 | |
| cd00609 | 350 | AAT_like Aspartate aminotransferase family. This f | 99.78 | |
| PLN02955 | 476 | 8-amino-7-oxononanoate synthase | 99.78 | |
| KOG1402 | 427 | consensus Ornithine aminotransferase [Amino acid t | 99.78 | |
| TIGR03372 | 442 | putres_am_tran putrescine aminotransferase. Member | 99.78 | |
| cd06450 | 345 | DOPA_deC_like DOPA decarboxylase family. This fami | 99.78 | |
| PRK05355 | 360 | 3-phosphoserine/phosphohydroxythreonine aminotrans | 99.78 | |
| PLN02721 | 353 | threonine aldolase | 99.78 | |
| cd06502 | 338 | TA_like Low-specificity threonine aldolase (TA). T | 99.77 | |
| PRK05964 | 423 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.77 | |
| COG0156 | 388 | BioF 7-keto-8-aminopelargonate synthetase and rela | 99.77 | |
| KOG2862 | 385 | consensus Alanine-glyoxylate aminotransferase AGT1 | 99.77 | |
| TIGR01141 | 346 | hisC histidinol-phosphate aminotransferase. Histid | 99.77 | |
| PRK06108 | 382 | aspartate aminotransferase; Provisional | 99.77 | |
| PF01276 | 417 | OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; | 99.77 | |
| PRK06939 | 397 | 2-amino-3-ketobutyrate coenzyme A ligase; Provisio | 99.77 | |
| PRK13392 | 410 | 5-aminolevulinate synthase; Provisional | 99.77 | |
| KOG2862 | 385 | consensus Alanine-glyoxylate aminotransferase AGT1 | 99.77 | |
| PRK07678 | 451 | aminotransferase; Validated | 99.77 | |
| PRK13393 | 406 | 5-aminolevulinate synthase; Provisional | 99.77 | |
| PRK09064 | 407 | 5-aminolevulinate synthase; Validated | 99.77 | |
| COG0076 | 460 | GadB Glutamate decarboxylase and related PLP-depen | 99.76 | |
| PRK11522 | 459 | putrescine--2-oxoglutarate aminotransferase; Provi | 99.76 | |
| TIGR01825 | 385 | gly_Cac_T_rel pyridoxal phosphate-dependent acyltr | 99.76 | |
| PLN03227 | 392 | serine palmitoyltransferase-like protein; Provisio | 99.76 | |
| PRK05958 | 385 | 8-amino-7-oxononanoate synthase; Reviewed | 99.76 | |
| cd06454 | 349 | KBL_like KBL_like; this family belongs to the pyri | 99.76 | |
| PRK12381 | 406 | bifunctional succinylornithine transaminase/acetyl | 99.76 | |
| cd06452 | 361 | SepCysS Sep-tRNA:Cys-tRNA synthase. This family be | 99.76 | |
| PRK13034 | 416 | serine hydroxymethyltransferase; Reviewed | 99.76 | |
| PRK15029 | 755 | arginine decarboxylase; Provisional | 99.76 | |
| PRK03715 | 395 | argD acetylornithine transaminase protein; Provisi | 99.76 | |
| TIGR01366 | 361 | serC_3 phosphoserine aminotransferase, putative. T | 99.75 | |
| TIGR01885 | 401 | Orn_aminotrans ornithine aminotransferase. This mo | 99.75 | |
| PLN02624 | 474 | ornithine-delta-aminotransferase | 99.75 | |
| TIGR00858 | 360 | bioF 8-amino-7-oxononanoate synthase. This model r | 99.75 | |
| PLN02822 | 481 | serine palmitoyltransferase | 99.75 | |
| PRK08114 | 395 | cystathionine beta-lyase; Provisional | 99.75 | |
| PRK05957 | 389 | aspartate aminotransferase; Provisional | 99.75 | |
| PRK01278 | 389 | argD acetylornithine transaminase protein; Provisi | 99.75 | |
| PRK06225 | 380 | aspartate aminotransferase; Provisional | 99.75 | |
| PRK04612 | 408 | argD acetylornithine transaminase protein; Provisi | 99.74 | |
| PRK05764 | 393 | aspartate aminotransferase; Provisional | 99.74 | |
| PRK06943 | 453 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.74 | |
| PRK05093 | 403 | argD bifunctional N-succinyldiaminopimelate-aminot | 99.74 | |
| PLN02760 | 504 | 4-aminobutyrate:pyruvate transaminase | 99.74 | |
| cd00609 | 350 | AAT_like Aspartate aminotransferase family. This f | 99.73 | |
| PRK07482 | 461 | hypothetical protein; Provisional | 99.73 | |
| PLN02822 | 481 | serine palmitoyltransferase | 99.73 | |
| PRK06173 | 429 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.73 | |
| PRK08117 | 433 | 4-aminobutyrate aminotransferase; Provisional | 99.73 | |
| PRK06541 | 460 | hypothetical protein; Provisional | 99.73 | |
| TIGR01437 | 363 | selA_rel uncharacterized pyridoxal phosphate-depen | 99.73 | |
| PRK00950 | 361 | histidinol-phosphate aminotransferase; Validated | 99.73 | |
| TIGR01364 | 349 | serC_1 phosphoserine aminotransferase. This model | 99.73 | |
| PRK08064 | 390 | cystathionine beta-lyase; Provisional | 99.72 | |
| PRK06767 | 386 | methionine gamma-lyase; Provisional | 99.72 | |
| PRK12403 | 460 | putative aminotransferase; Provisional | 99.72 | |
| PRK07986 | 428 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.72 | |
| PRK05965 | 459 | hypothetical protein; Provisional | 99.72 | |
| PRK07682 | 378 | hypothetical protein; Validated | 99.72 | |
| COG0161 | 449 | BioA Adenosylmethionine-8-amino-7-oxononanoate ami | 99.72 | |
| PRK13360 | 442 | omega amino acid--pyruvate transaminase; Provision | 99.72 | |
| PRK06916 | 460 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.72 | |
| PRK09221 | 445 | beta alanine--pyruvate transaminase; Provisional | 99.72 | |
| PRK09082 | 386 | methionine aminotransferase; Validated | 99.72 | |
| PLN00175 | 413 | aminotransferase family protein; Provisional | 99.72 | |
| PRK04013 | 364 | argD acetylornithine/acetyl-lysine aminotransferas | 99.72 | |
| PRK07681 | 399 | aspartate aminotransferase; Provisional | 99.72 | |
| TIGR01324 | 377 | cysta_beta_ly_B cystathionine beta-lyase, bacteria | 99.72 | |
| PLN02880 | 490 | tyrosine decarboxylase | 99.72 | |
| TIGR03576 | 346 | pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 | 99.71 | |
| cd00616 | 352 | AHBA_syn 3-amino-5-hydroxybenzoic acid synthase fa | 99.71 | |
| PRK06939 | 397 | 2-amino-3-ketobutyrate coenzyme A ligase; Provisio | 99.71 | |
| PRK05968 | 389 | hypothetical protein; Provisional | 99.71 | |
| PRK06207 | 405 | aspartate aminotransferase; Provisional | 99.71 | |
| PRK06062 | 451 | hypothetical protein; Provisional | 99.71 | |
| PLN02263 | 470 | serine decarboxylase | 99.71 | |
| cd00615 | 294 | Orn_deC_like Ornithine decarboxylase family. This | 99.71 | |
| cd00614 | 369 | CGS_like CGS_like: Cystathionine gamma-synthase is | 99.71 | |
| PRK06105 | 460 | aminotransferase; Provisional | 99.71 | |
| PRK05630 | 422 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.71 | |
| PRK05639 | 457 | 4-aminobutyrate aminotransferase; Provisional | 99.71 | |
| PRK09028 | 394 | cystathionine beta-lyase; Provisional | 99.71 | |
| PRK07324 | 373 | transaminase; Validated | 99.71 | |
| PLN02590 | 539 | probable tyrosine decarboxylase | 99.71 | |
| PRK08593 | 445 | 4-aminobutyrate aminotransferase; Provisional | 99.71 | |
| PRK08360 | 443 | 4-aminobutyrate aminotransferase; Provisional | 99.71 | |
| PRK09105 | 370 | putative aminotransferase; Provisional | 99.71 | |
| PRK11658 | 379 | UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate amin | 99.71 | |
| PRK05387 | 353 | histidinol-phosphate aminotransferase; Provisional | 99.71 | |
| KOG1360 | 570 | consensus 5-aminolevulinate synthase [Coenzyme tra | 99.71 | |
| PRK08361 | 391 | aspartate aminotransferase; Provisional | 99.7 | |
| PRK08742 | 472 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.7 | |
| PLN03026 | 380 | histidinol-phosphate aminotransferase; Provisional | 99.7 | |
| PRK07309 | 391 | aromatic amino acid aminotransferase; Validated | 99.7 | |
| PRK12389 | 428 | glutamate-1-semialdehyde aminotransferase; Provisi | 99.7 | |
| PRK07030 | 466 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.7 | |
| TIGR01329 | 378 | cysta_beta_ly_E cystathionine beta-lyase, eukaryot | 99.7 | |
| PRK13578 | 720 | ornithine decarboxylase; Provisional | 99.7 | |
| PRK15029 | 755 | arginine decarboxylase; Provisional | 99.7 | |
| PRK07495 | 425 | 4-aminobutyrate aminotransferase; Provisional | 99.7 | |
| TIGR03537 | 350 | DapC succinyldiaminopimelate transaminase. Note: t | 99.7 | |
| PRK13580 | 493 | serine hydroxymethyltransferase; Provisional | 99.7 | |
| TIGR03588 | 380 | PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-amin | 99.7 | |
| PRK08064 | 390 | cystathionine beta-lyase; Provisional | 99.7 | |
| cd00611 | 355 | PSAT_like Phosphoserine aminotransferase (PSAT) fa | 99.69 | |
| PTZ00125 | 400 | ornithine aminotransferase-like protein; Provision | 99.69 | |
| PRK06290 | 410 | aspartate aminotransferase; Provisional | 99.69 | |
| PRK07582 | 366 | cystathionine gamma-lyase; Validated | 99.69 | |
| TIGR01141 | 346 | hisC histidinol-phosphate aminotransferase. Histid | 99.69 | |
| PF01276 | 417 | OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; | 99.69 | |
| PRK14807 | 351 | histidinol-phosphate aminotransferase; Provisional | 99.69 | |
| COG0079 | 356 | HisC Histidinol-phosphate/aromatic aminotransferas | 99.69 | |
| TIGR03799 | 522 | NOD_PanD_pyr putative pyridoxal-dependent aspartat | 99.69 | |
| PRK07505 | 402 | hypothetical protein; Provisional | 99.69 | |
| TIGR00858 | 360 | bioF 8-amino-7-oxononanoate synthase. This model r | 99.69 | |
| PRK05769 | 441 | 4-aminobutyrate aminotransferase; Provisional | 99.69 | |
| PRK13238 | 460 | tnaA tryptophanase/L-cysteine desulfhydrase, PLP-d | 99.69 | |
| PRK06082 | 459 | 4-aminobutyrate aminotransferase; Provisional | 99.69 | |
| PRK07481 | 449 | hypothetical protein; Provisional | 99.69 | |
| PRK06058 | 443 | 4-aminobutyrate aminotransferase; Provisional | 99.69 | |
| cd06502 | 338 | TA_like Low-specificity threonine aldolase (TA). T | 99.69 | |
| PRK02731 | 367 | histidinol-phosphate aminotransferase; Validated | 99.69 | |
| PRK02936 | 377 | argD acetylornithine aminotransferase; Provisional | 99.69 | |
| TIGR02407 | 412 | ectoine_ectB diaminobutyrate--2-oxoglutarate amino | 99.68 | |
| TIGR01328 | 391 | met_gam_lyase methionine gamma-lyase. This model d | 99.68 | |
| cd00610 | 413 | OAT_like Acetyl ornithine aminotransferase family. | 99.68 | |
| PRK09264 | 425 | diaminobutyrate--2-oxoglutarate aminotransferase; | 99.68 | |
| PRK07483 | 443 | hypothetical protein; Provisional | 99.68 | |
| PRK07480 | 456 | putative aminotransferase; Validated | 99.68 | |
| TIGR00474 | 454 | selA seryl-tRNA(sec) selenium transferase. In bact | 99.68 | |
| PLN02482 | 474 | glutamate-1-semialdehyde 2,1-aminomutase | 99.68 | |
| PRK12414 | 384 | putative aminotransferase; Provisional | 99.68 | |
| PLN00144 | 382 | acetylornithine transaminase | 99.68 | |
| PRK04635 | 354 | histidinol-phosphate aminotransferase; Provisional | 99.68 | |
| TIGR00707 | 379 | argD acetylornithine and succinylornithine aminotr | 99.68 | |
| PRK09792 | 421 | 4-aminobutyrate transaminase; Provisional | 99.68 | |
| cd00614 | 369 | CGS_like CGS_like: Cystathionine gamma-synthase is | 99.68 | |
| PRK08912 | 387 | hypothetical protein; Provisional | 99.68 | |
| PRK01688 | 351 | histidinol-phosphate aminotransferase; Provisional | 99.68 | |
| PRK08134 | 433 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.67 | |
| TIGR03540 | 383 | DapC_direct LL-diaminopimelate aminotransferase. T | 99.67 | |
| PRK08153 | 369 | histidinol-phosphate aminotransferase; Provisional | 99.67 | |
| PRK04311 | 464 | selenocysteine synthase; Provisional | 99.67 | |
| PRK06938 | 464 | diaminobutyrate--2-oxoglutarate aminotransferase; | 99.67 | |
| PRK08133 | 390 | O-succinylhomoserine sulfhydrylase; Validated | 99.67 | |
| PRK01533 | 366 | histidinol-phosphate aminotransferase; Validated | 99.67 | |
| PRK06917 | 447 | hypothetical protein; Provisional | 99.67 | |
| PRK08114 | 395 | cystathionine beta-lyase; Provisional | 99.67 | |
| PLN00145 | 430 | tyrosine/nicotianamine aminotransferase; Provision | 99.67 | |
| PRK05958 | 385 | 8-amino-7-oxononanoate synthase; Reviewed | 99.67 | |
| PRK07550 | 386 | hypothetical protein; Provisional | 99.67 | |
| PRK06234 | 400 | methionine gamma-lyase; Provisional | 99.67 | |
| TIGR00713 | 423 | hemL glutamate-1-semialdehyde-2,1-aminomutase. Thi | 99.67 | |
| TIGR00508 | 427 | bioA adenosylmethionine-8-amino-7-oxononanoate tra | 99.67 | |
| PRK07504 | 398 | O-succinylhomoserine sulfhydrylase; Reviewed | 99.67 | |
| PRK09028 | 394 | cystathionine beta-lyase; Provisional | 99.66 | |
| PRK15407 | 438 | lipopolysaccharide biosynthesis protein RfbH; Prov | 99.66 | |
| PRK08960 | 387 | hypothetical protein; Provisional | 99.66 | |
| PRK13578 | 720 | ornithine decarboxylase; Provisional | 99.66 | |
| PRK03158 | 359 | histidinol-phosphate aminotransferase; Provisional | 99.66 | |
| PRK05942 | 394 | aspartate aminotransferase; Provisional | 99.66 | |
| PRK03321 | 352 | putative aminotransferase; Provisional | 99.66 | |
| PLN02187 | 462 | rooty/superroot1 | 99.66 | |
| PRK05968 | 389 | hypothetical protein; Provisional | 99.66 | |
| TIGR01325 | 380 | O_suc_HS_sulf O-succinylhomoserine sulfhydrylase. | 99.66 | |
| PRK05967 | 395 | cystathionine beta-lyase; Provisional | 99.66 | |
| TIGR00709 | 442 | dat 2,4-diaminobutyrate 4-transaminases. This fami | 99.66 | |
| TIGR01825 | 385 | gly_Cac_T_rel pyridoxal phosphate-dependent acyltr | 99.66 | |
| PRK07777 | 387 | aminotransferase; Validated | 99.66 | |
| PRK09276 | 385 | LL-diaminopimelate aminotransferase; Provisional | 99.66 | |
| PRK07036 | 466 | hypothetical protein; Provisional | 99.65 | |
| PRK07050 | 394 | cystathionine beta-lyase; Provisional | 99.65 | |
| PRK15399 | 713 | lysine decarboxylase LdcC; Provisional | 99.65 | |
| PF01053 | 386 | Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent | 99.65 | |
| COG0001 | 432 | HemL Glutamate-1-semialdehyde aminotransferase [Co | 99.65 | |
| cd00378 | 402 | SHMT Serine-glycine hydroxymethyltransferase (SHMT | 99.65 | |
| PRK06176 | 380 | cystathionine gamma-synthase/cystathionine beta-ly | 99.65 | |
| PRK04870 | 356 | histidinol-phosphate aminotransferase; Provisional | 99.65 | |
| PRK07504 | 398 | O-succinylhomoserine sulfhydrylase; Reviewed | 99.65 | |
| PRK10534 | 333 | L-threonine aldolase; Provisional | 99.65 | |
| PRK07337 | 388 | aminotransferase; Validated | 99.65 | |
| TIGR01328 | 391 | met_gam_lyase methionine gamma-lyase. This model d | 99.65 | |
| PLN02509 | 464 | cystathionine beta-lyase | 99.65 | |
| PRK15400 | 714 | lysine decarboxylase CadA; Provisional | 99.65 | |
| PF00155 | 363 | Aminotran_1_2: Aminotransferase class I and II 1-a | 99.65 | |
| PLN02242 | 418 | methionine gamma-lyase | 99.65 | |
| PRK06767 | 386 | methionine gamma-lyase; Provisional | 99.65 | |
| PRK00011 | 416 | glyA serine hydroxymethyltransferase; Reviewed | 99.65 | |
| PLN02656 | 409 | tyrosine transaminase | 99.65 | |
| PRK06777 | 421 | 4-aminobutyrate aminotransferase; Provisional | 99.65 | |
| PRK13355 | 517 | bifunctional HTH-domain containing protein/aminotr | 99.64 | |
| TIGR03531 | 444 | selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium tr | 99.64 | |
| COG3844 | 407 | Kynureninase [Amino acid transport and metabolism] | 99.64 | |
| PRK08068 | 389 | transaminase; Reviewed | 99.64 | |
| TIGR01329 | 378 | cysta_beta_ly_E cystathionine beta-lyase, eukaryot | 99.64 | |
| KOG1404 | 442 | consensus Alanine-glyoxylate aminotransferase AGT2 | 99.64 | |
| PRK07810 | 403 | O-succinylhomoserine sulfhydrylase; Provisional | 99.64 | |
| COG0626 | 396 | MetC Cystathionine beta-lyases/cystathionine gamma | 99.64 | |
| PRK09147 | 396 | succinyldiaminopimelate transaminase; Provisional | 99.64 | |
| TIGR03576 | 346 | pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 | 99.64 | |
| PRK08861 | 388 | cystathionine gamma-synthase; Provisional | 99.64 | |
| PRK08249 | 398 | cystathionine gamma-synthase; Provisional | 99.64 | |
| PRK08861 | 388 | cystathionine gamma-synthase; Provisional | 99.64 | |
| TIGR02379 | 376 | ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase | 99.64 | |
| PRK07046 | 453 | aminotransferase; Validated | 99.64 | |
| PRK08248 | 431 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.64 | |
| PRK07812 | 436 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.63 | |
| TIGR01264 | 401 | tyr_amTase_E tyrosine aminotransferase, eukaryotic | 99.63 | |
| PRK07582 | 366 | cystathionine gamma-lyase; Validated | 99.63 | |
| PRK06107 | 402 | aspartate aminotransferase; Provisional | 99.63 | |
| PRK00615 | 433 | glutamate-1-semialdehyde aminotransferase; Provisi | 99.63 | |
| PRK03317 | 368 | histidinol-phosphate aminotransferase; Provisional | 99.63 | |
| KOG2467 | 477 | consensus Glycine/serine hydroxymethyltransferase | 99.63 | |
| PRK06931 | 459 | diaminobutyrate--2-oxoglutarate aminotransferase; | 99.63 | |
| PRK07503 | 403 | methionine gamma-lyase; Provisional | 99.63 | |
| PRK05613 | 437 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.63 | |
| PTZ00433 | 412 | tyrosine aminotransferase; Provisional | 99.63 | |
| PRK07683 | 387 | aminotransferase A; Validated | 99.63 | |
| PRK07811 | 388 | cystathionine gamma-synthase; Provisional | 99.63 | |
| PRK08574 | 385 | cystathionine gamma-synthase; Provisional | 99.63 | |
| KOG0257 | 420 | consensus Kynurenine aminotransferase, glutamine t | 99.63 | |
| TIGR01365 | 374 | serC_2 phosphoserine aminotransferase, Methanosarc | 99.63 | |
| PRK02627 | 396 | acetylornithine aminotransferase; Provisional | 99.62 | |
| PRK06348 | 384 | aspartate aminotransferase; Provisional | 99.62 | |
| PRK06702 | 432 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.62 | |
| PRK09148 | 405 | aminotransferase; Validated | 99.62 | |
| PLN02242 | 418 | methionine gamma-lyase | 99.62 | |
| PRK07503 | 403 | methionine gamma-lyase; Provisional | 99.62 | |
| TIGR00700 | 420 | GABAtrnsam 4-aminobutyrate aminotransferase, proka | 99.62 | |
| COG2873 | 426 | MET17 O-acetylhomoserine sulfhydrylase [Amino acid | 99.62 | |
| PRK08574 | 385 | cystathionine gamma-synthase; Provisional | 99.62 | |
| PRK11706 | 375 | TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisio | 99.61 | |
| PRK07366 | 388 | succinyldiaminopimelate transaminase; Validated | 99.61 | |
| PRK00062 | 426 | glutamate-1-semialdehyde aminotransferase; Provisi | 99.61 | |
| PRK08056 | 356 | threonine-phosphate decarboxylase; Provisional | 99.61 | |
| PRK07568 | 397 | aspartate aminotransferase; Provisional | 99.61 | |
| PRK07269 | 364 | cystathionine gamma-synthase; Reviewed | 99.61 | |
| PRK15400 | 714 | lysine decarboxylase CadA; Provisional | 99.61 | |
| PRK07671 | 377 | cystathionine beta-lyase; Provisional | 99.61 | |
| PRK07812 | 436 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.61 | |
| PF01041 | 363 | DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransfe | 99.61 | |
| COG0399 | 374 | WecE Predicted pyridoxal phosphate-dependent enzym | 99.61 | |
| PRK08363 | 398 | alanine aminotransferase; Validated | 99.61 | |
| PRK08247 | 366 | cystathionine gamma-synthase; Reviewed | 99.61 | |
| PLN02721 | 353 | threonine aldolase | 99.6 | |
| PRK08248 | 431 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.6 | |
| PRK07050 | 394 | cystathionine beta-lyase; Provisional | 99.6 | |
| PRK08249 | 398 | cystathionine gamma-synthase; Provisional | 99.6 | |
| TIGR01265 | 403 | tyr_nico_aTase tyrosine/nicotianamine aminotransfe | 99.6 | |
| PRK06148 | 1013 | hypothetical protein; Provisional | 99.6 | |
| PRK15481 | 431 | transcriptional regulatory protein PtsJ; Provision | 99.6 | |
| PLN03226 | 475 | serine hydroxymethyltransferase; Provisional | 99.6 | |
| PRK07908 | 349 | hypothetical protein; Provisional | 99.6 | |
| TIGR00699 | 464 | GABAtrns_euk 4-aminobutyrate aminotransferase, euk | 99.6 | |
| TIGR01324 | 377 | cysta_beta_ly_B cystathionine beta-lyase, bacteria | 99.6 | |
| PRK06084 | 425 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.6 | |
| PRK05994 | 427 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.6 | |
| PRK08776 | 405 | cystathionine gamma-synthase; Provisional | 99.6 | |
| PRK05166 | 371 | histidinol-phosphate aminotransferase; Provisional | 99.6 | |
| PRK08297 | 443 | L-lysine aminotransferase; Provisional | 99.6 | |
| PRK05994 | 427 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.59 | |
| PRK08636 | 403 | aspartate aminotransferase; Provisional | 99.59 | |
| PRK07811 | 388 | cystathionine gamma-synthase; Provisional | 99.59 | |
| PRK08776 | 405 | cystathionine gamma-synthase; Provisional | 99.59 | |
| PRK08134 | 433 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.59 | |
| PRK05613 | 437 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.59 | |
| COG2008 | 342 | GLY1 Threonine aldolase [Amino acid transport and | 99.59 | |
| PRK06149 | 972 | hypothetical protein; Provisional | 99.59 | |
| PRK05967 | 395 | cystathionine beta-lyase; Provisional | 99.59 | |
| TIGR03251 | 431 | LAT_fam L-lysine 6-transaminase. Characterized mem | 99.59 | |
| PRK02731 | 367 | histidinol-phosphate aminotransferase; Validated | 99.59 | |
| PRK09265 | 404 | aminotransferase AlaT; Validated | 99.59 | |
| PRK04311 | 464 | selenocysteine synthase; Provisional | 99.59 | |
| PRK06460 | 376 | hypothetical protein; Provisional | 99.59 | |
| PRK04781 | 364 | histidinol-phosphate aminotransferase; Provisional | 99.59 | |
| PRK08045 | 386 | cystathionine gamma-synthase; Provisional | 99.58 | |
| PRK11658 | 379 | UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate amin | 99.58 | |
| TIGR03538 | 393 | DapC_gpp succinyldiaminopimelate transaminase. Thi | 99.58 | |
| PRK06836 | 394 | aspartate aminotransferase; Provisional | 99.58 | |
| PRK06176 | 380 | cystathionine gamma-synthase/cystathionine beta-ly | 99.58 | |
| COG1103 | 382 | Archaea-specific pyridoxal phosphate-dependent enz | 99.58 | |
| PRK04260 | 375 | acetylornithine aminotransferase; Provisional | 99.58 | |
| PRK08045 | 386 | cystathionine gamma-synthase; Provisional | 99.58 | |
| TIGR01140 | 330 | L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxy | 99.58 | |
| PLN00143 | 409 | tyrosine/nicotianamine aminotransferase; Provision | 99.58 | |
| PRK08133 | 390 | O-succinylhomoserine sulfhydrylase; Validated | 99.58 | |
| PRK07810 | 403 | O-succinylhomoserine sulfhydrylase; Provisional | 99.57 | |
| PF00282 | 373 | Pyridoxal_deC: Pyridoxal-dependent decarboxylase c | 99.57 | |
| TIGR01325 | 380 | O_suc_HS_sulf O-succinylhomoserine sulfhydrylase. | 99.57 | |
| COG1982 | 557 | LdcC Arginine/lysine/ornithine decarboxylases [Ami | 99.57 | |
| PRK06234 | 400 | methionine gamma-lyase; Provisional | 99.57 | |
| TIGR02080 | 382 | O_succ_thio_ly O-succinylhomoserine (thiol)-lyase. | 99.57 | |
| PRK15399 | 713 | lysine decarboxylase LdcC; Provisional | 99.57 | |
| PLN02271 | 586 | serine hydroxymethyltransferase | 99.57 | |
| PRK05939 | 397 | hypothetical protein; Provisional | 99.57 | |
| TIGR00474 | 454 | selA seryl-tRNA(sec) selenium transferase. In bact | 99.57 | |
| PRK08175 | 395 | aminotransferase; Validated | 99.56 | |
| KOG1360 | 570 | consensus 5-aminolevulinate synthase [Coenzyme tra | 99.56 | |
| cd01494 | 170 | AAT_I Aspartate aminotransferase (AAT) superfamily | 99.56 | |
| PRK05939 | 397 | hypothetical protein; Provisional | 99.56 | |
| cd00615 | 294 | Orn_deC_like Ornithine decarboxylase family. This | 99.55 | |
| COG1982 | 557 | LdcC Arginine/lysine/ornithine decarboxylases [Ami | 99.55 | |
| PRK06434 | 384 | cystathionine gamma-lyase; Validated | 99.55 | |
| PRK06084 | 425 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.55 | |
| PRK02610 | 374 | histidinol-phosphate aminotransferase; Provisional | 99.55 | |
| PRK06918 | 451 | 4-aminobutyrate aminotransferase; Reviewed | 99.55 | |
| COG2873 | 426 | MET17 O-acetylhomoserine sulfhydrylase [Amino acid | 99.55 | |
| TIGR01365 | 374 | serC_2 phosphoserine aminotransferase, Methanosarc | 99.54 | |
| PLN02376 | 496 | 1-aminocyclopropane-1-carboxylate synthase | 99.54 | |
| TIGR03588 | 380 | PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-amin | 99.54 | |
| TIGR01326 | 418 | OAH_OAS_sulfhy OAH/OAS sulfhydrylase. This model d | 99.54 | |
| PLN02509 | 464 | cystathionine beta-lyase | 99.54 | |
| PRK05387 | 353 | histidinol-phosphate aminotransferase; Provisional | 99.54 | |
| KOG1359 | 417 | consensus Glycine C-acetyltransferase/2-amino-3-ke | 99.54 | |
| PRK06358 | 354 | threonine-phosphate decarboxylase; Provisional | 99.54 | |
| TIGR01326 | 418 | OAH_OAS_sulfhy OAH/OAS sulfhydrylase. This model d | 99.54 | |
| PRK05839 | 374 | hypothetical protein; Provisional | 99.53 | |
| PTZ00377 | 481 | alanine aminotransferase; Provisional | 99.53 | |
| KOG0259 | 447 | consensus Tyrosine aminotransferase [Amino acid tr | 99.53 | |
| PRK06425 | 332 | histidinol-phosphate aminotransferase; Validated | 99.53 | |
| PRK14809 | 357 | histidinol-phosphate aminotransferase; Provisional | 99.53 | |
| PLN02450 | 468 | 1-aminocyclopropane-1-carboxylate synthase | 99.53 | |
| KOG1383 | 491 | consensus Glutamate decarboxylase/sphingosine phos | 99.53 | |
| PRK06702 | 432 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.53 | |
| PRK08247 | 366 | cystathionine gamma-synthase; Reviewed | 99.52 | |
| KOG0053 | 409 | consensus Cystathionine beta-lyases/cystathionine | 99.52 | |
| PRK06225 | 380 | aspartate aminotransferase; Provisional | 99.52 | |
| PLN02452 | 365 | phosphoserine transaminase | 99.51 | |
| PRK07269 | 364 | cystathionine gamma-synthase; Reviewed | 99.51 | |
| PRK09105 | 370 | putative aminotransferase; Provisional | 99.51 | |
| PRK08088 | 425 | 4-aminobutyrate aminotransferase; Validated | 99.51 | |
| cd00617 | 431 | Tnase_like Tryptophanase family (Tnase). This fami | 99.51 | |
| PTZ00376 | 404 | aspartate aminotransferase; Provisional | 99.51 | |
| PRK07671 | 377 | cystathionine beta-lyase; Provisional | 99.5 | |
| PRK06460 | 376 | hypothetical protein; Provisional | 99.5 | |
| PRK07590 | 409 | L,L-diaminopimelate aminotransferase; Validated | 99.5 | |
| PRK07865 | 364 | N-succinyldiaminopimelate aminotransferase; Review | 99.5 | |
| PRK05957 | 389 | aspartate aminotransferase; Provisional | 99.5 | |
| PLN02607 | 447 | 1-aminocyclopropane-1-carboxylate synthase | 99.5 | |
| PRK06959 | 339 | putative threonine-phosphate decarboxylase; Provis | 99.5 | |
| COG1103 | 382 | Archaea-specific pyridoxal phosphate-dependent enz | 99.49 | |
| PRK09275 | 527 | aspartate aminotransferase; Provisional | 99.49 | |
| PRK07908 | 349 | hypothetical protein; Provisional | 99.49 | |
| PRK05664 | 330 | threonine-phosphate decarboxylase; Reviewed | 99.48 | |
| TIGR03539 | 357 | DapC_actino succinyldiaminopimelate transaminase. | 99.48 | |
| PRK03158 | 359 | histidinol-phosphate aminotransferase; Provisional | 99.48 | |
| PRK03967 | 337 | histidinol-phosphate aminotransferase; Provisional | 99.48 | |
| PF01041 | 363 | DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransfe | 99.48 | |
| PRK07505 | 402 | hypothetical protein; Provisional | 99.48 | |
| PRK00854 | 401 | rocD ornithine--oxo-acid transaminase; Reviewed | 99.47 | |
| PF00155 | 363 | Aminotran_1_2: Aminotransferase class I and II 1-a | 99.47 | |
| PRK06108 | 382 | aspartate aminotransferase; Provisional | 99.47 | |
| TIGR03801 | 521 | asp_4_decarbox aspartate 4-decarboxylase. This enz | 99.47 | |
| PF01053 | 386 | Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent | 99.47 |
| >KOG2040 consensus Glycine dehydrogenase (decarboxylating) [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-174 Score=1429.69 Aligned_cols=881 Identities=69% Similarity=1.112 Sum_probs=829.7
Q ss_pred cccccccccCCCCccccccCCCCCHHHHHHHHHHhCCCCHHHhhhhcCCCcc-ccCCCCCCCCCCCCCHHHHHHHHHHHh
Q 001989 83 QTRGISVEALKPSDTFARRHNSATPEDQAKMSELVGLDNLDSLIDATVPKSI-RIDSMKFSKFDEGLTESQMIEHMQKLA 161 (985)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ml~~~g~~~~~~l~~~~ip~~~-~~~~~~lp~~~~~~se~e~~~~~~~l~ 161 (985)
.++++...+++|.|+|..|||++++.|+++||+++|++++|+|+++.||++| +++++.+| ++++|.|+++|++++|
T Consensus 37 ~~~~~~~~~~~~~d~F~~RHigp~~~dq~~ml~tlG~~dl~~l~~~~VP~~Ir~~~~l~~~---~~~~E~eml~~l~~ia 113 (1001)
T KOG2040|consen 37 ATRSQSERIFPPLDTFPRRHIGPSPTDQQQMLDTLGYKDLDELIEKTVPKSIRLKRPLKMD---KPLCESEMLQHLEDIA 113 (1001)
T ss_pred hhcchhhhccCcccccccccCCCCchHHHHHHHhcChhhHHHHHHhhcchhhcccchhcCC---CCcCHHHHHHHHHHHH
Confidence 4566667789999999999999999999999999999999999999999999 88899997 8999999999999999
Q ss_pred cCCCccceecCCCCCCCCCcHHHHHHHHhCCccccccCCChhhHhhhHHHHHHHHHHHHHHhcCCCCcceeeccchHHHH
Q 001989 162 SMNKVYKSFIGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAA 241 (985)
Q Consensus 162 ~~n~~~~~~lG~g~y~~~~p~~v~~~i~~~~~~~t~~~pyq~e~sqg~l~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ 241 (985)
+||+.+.+|+|+|||++.+|++|.|+++++++|||.|||||||+|||+|+.+.+||+++++|||++.+|+|+.|.||+++
T Consensus 114 ~kNk~~ksfIGmGYyn~~vP~~I~RNilenp~W~TqYTPYQ~EIsQGRLEsllNyQTmi~dlTGL~~aNASLLDEgTAaa 193 (1001)
T KOG2040|consen 114 SKNKIWKSFIGMGYYNTHVPAVILRNILENPGWYTQYTPYQAEISQGRLESLLNYQTMITDLTGLPMANASLLDEGTAAA 193 (1001)
T ss_pred hhhhHHHHhhccccccccCcHHHHHHhhhCCcceeccCCCchhhhhhhHHHHhhhHHhhhhccCCcccchhhhccchhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCchhhhccCCCEeEEEEEcCCCCeeeccHHHHHHH
Q 001989 242 EAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDLKDIDYKSGDVCGVLVQYPGTEGEVLDYGDFIKN 321 (985)
Q Consensus 242 ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~~~l~~l~~~t~~V~v~~pn~~G~v~di~~I~~~ 321 (985)
||+.|+.+.. +++|++++..+||+++.+++++++.+|++++..++.+.....+++++|+||+|++.|.+.|..++++.
T Consensus 194 EAm~l~~~~~--krkk~vvd~~~hpqtlsV~~TRa~~~~i~v~~~~~~~~~~s~~~v~gvlvQYP~t~G~i~d~~el~~~ 271 (1001)
T KOG2040|consen 194 EAMALCNRIN--KRKKFVVDSNCHPQTLSVVKTRAKGFGIKVVVSDIKEADYSSKDVSGVLVQYPDTEGSVLDFDELVEL 271 (1001)
T ss_pred HHHHHHHhhc--ccceEEecCCCCcchhhhhhccccccceeEEecCHHHhhccccceeEEEEEcCCCCCcccCHHHHHHH
Confidence 9999998876 77889999999999999999999999999888776554434567999999999999999999999999
Q ss_pred HHhCCcEEEEEecCccccCCCCCCcccceEEEecCccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCccee
Q 001989 322 AHANGVKVVMATDLLALTILKPPGELGADIVVGSAQRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALR 401 (985)
Q Consensus 322 a~~~galliV~a~~~~lg~l~~~~~~GaDi~v~s~k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~ 401 (985)
+|+.|.++++++|++++.++++|++|||||++||+|.||.|+|+||||+|||+|++++.|.||||++|.|+|..|+++|+
T Consensus 272 a~~~~s~vv~atDLLaLtiLrpPgefGaDIavGSsQRFGVPlGYGGPHAaFfAv~~~l~R~mPGRiiGvtkD~~gk~a~R 351 (1001)
T KOG2040|consen 272 AHANGSLVVMATDLLALTILRPPGEFGADIAVGSSQRFGVPLGYGGPHAAFFAVSESLVRMMPGRIIGVTKDALGKEAYR 351 (1001)
T ss_pred hhccCceEEEeehhhHHHccCChhhcCceeeeccccccCccccCCCchHHHHHHHHHHHhhCCCceEeeeecccccHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecccccccccccccCCCccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCCCcceEEEe
Q 001989 402 VAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDTVKVK 481 (985)
Q Consensus 402 l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~~~~~~~~~ 481 (985)
|.||||||||||+||||||||+|+|.|.++++|+.|+|++|+++|++|++..+.+|...|+..| .++.+.++|+++.|.
T Consensus 352 LALQTREQHIrRDKATSNICTAQALLANmaAmyaiYHGp~gL~~IArrvh~~T~~l~~~l~~ag-hel~~k~fFDTLkI~ 430 (1001)
T KOG2040|consen 352 LALQTREQHIRRDKATSNICTAQALLANMAAMYAIYHGPHGLKEIARRVHNLTLILAEGLKNAG-HELQHKPFFDTLKIR 430 (1001)
T ss_pred HHHHHHHHHhhhhccchhhhHHHHHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHHHHHHHhhcc-hhhccccccceEEEE
Confidence 9999999999999999999999999999999999999999999999999999999999999998 898888999999999
Q ss_pred cCC-HHHHHHHHHHcCceeeeecCCeEEEEeccCCCHHHHHHHHHHHhCCCCCCCCHHhhhhhh-----hccCCCCccCC
Q 001989 482 CAD-AHAIASAAYKIEMNLRVVDSNTVTASFDETTTLEDVDKLFIVFAGGKSVPFTAASLAEEV-----ETAIPSGLTRE 555 (985)
Q Consensus 482 ~~~-~~~v~~~L~~~GI~~~~~~~~~lris~t~~~t~edId~li~aL~~~~~~~~~~~~l~~~~-----~~~ip~~~~~~ 555 (985)
+.. ++++.++..+++|+++.++++.+.+++.|+.+++|+|.|+..+.++ |..++..+. ....|+.++|+
T Consensus 431 ~~~s~~~~l~rA~~~~iNlr~~ed~tigvslDETv~~~DvddLl~vf~~~-----ss~~~~~E~~~~e~~~~~~s~f~Rt 505 (1001)
T KOG2040|consen 431 CGCSAEEVLDRAAKRQINLRLVEDGTIGVSLDETVTEKDVDDLLWVFNEE-----SSVELVAESMGEECNGIPPSVFKRT 505 (1001)
T ss_pred ecCcHHHHHHHHHhhcCceEEeecCceEEeecccccHHHHHHHHHHHccC-----ChHHHHHHhhhhhccCCCCcccccC
Confidence 987 8999999999999999999999999999999999999999999976 444443221 23578999999
Q ss_pred CCCCCCccccCCCCHHHHHHHHHHHhccccCcccccccccccccCCCccccccccccccccccCCCCchhhhhhHHHHHH
Q 001989 556 SPYLTHPVFNKYHTEHELLRYIHLLQSKELSLCHSMIPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFN 635 (985)
Q Consensus 556 ~~~~~~p~~~~~~se~e~~~~l~~l~~~~~~~~~~~~~lG~~t~~~~~~~~~~~~~~~~f~~~~p~~p~e~~~G~~~~~~ 635 (985)
++|+++|||+.++||++++|||++|.+||+++.++|||||||||++|+..|++|+.|++|+|+|||+|.|+.||+++++.
T Consensus 506 s~~L~hpVFn~yhSEt~lvRYm~kLenKDlSLvhSMiPLGSCTMKLNsttEmmPiTwp~fanIHPF~P~eQaqGY~~lf~ 585 (1001)
T KOG2040|consen 506 SPYLTHPVFNSYHSETELVRYMKKLENKDLSLVHSMIPLGSCTMKLNSTTEMMPITWPEFANIHPFAPVEQAQGYQQLFT 585 (1001)
T ss_pred CccccchhhhhcccHHHHHHHHHHhhccchhhhhhcccccceeeeccccceeccccchhhccCCCCCchHHHhhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcCCCCCCC
Q 001989 636 NLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKGNI 715 (985)
Q Consensus 636 e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~d~~g~i 715 (985)
++++++|+++|+|..++++|||++|+++++++||+|+.++|+..++.+++|.++||+||+++++.|++|+.|.++.+|.+
T Consensus 586 ~Le~~Lc~iTG~D~~s~QPNsGA~GEYaGL~~IRaY~~~kge~hRnvClIPvSAHGTNPASA~MagmkvvpV~~~~~G~i 665 (1001)
T KOG2040|consen 586 ELEKDLCEITGFDSFSLQPNSGAQGEYAGLRVIRAYLESKGEGHRNVCLIPVSAHGTNPASAAMAGMKVVPVGCDANGNI 665 (1001)
T ss_pred HHHHHhheeecccceeecCCCCcccchhhHHHHHHHHHhccCCcceeEEEeecccCCChhhHHhcCCEEEEeeccCCCCc
Confidence 99999999999999999999999999999999999999999878889999999999999999999999999999999999
Q ss_pred CHHHHHHHHHhcCCCEEEEEEEcCCCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCccCCcEEEeCCcccc
Q 001989 716 NIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIGADVCHLNLHKTF 795 (985)
Q Consensus 716 D~e~L~~~i~~~~~~t~~Vvv~~pn~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~g~Di~~~s~hK~l 795 (985)
|+.+|+++.++|+++.+++||+||+++|+++++|+++++++|++|..|+.|||+++++.|+++||++|+|+++.++||||
T Consensus 666 d~~dLk~kaekh~~~Laa~MvTYPST~GvfE~~i~d~cd~iHehGGQVYlDGANMNAqVGlc~pGd~GaDV~HLNLHKTF 745 (1001)
T KOG2040|consen 666 DMVDLKAKAEKHKDNLAALMVTYPSTHGVFEEGIDDICDIIHEHGGQVYLDGANMNAQVGLCRPGDIGADVCHLNLHKTF 745 (1001)
T ss_pred cHHHHHHHHHHhhhhhheeEEecccccccccccHHHHHHHHHhcCCEEEecCCCccceecccCCccccccceeeccccee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHHHHHHHHHH
Q 001989 796 CIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIA 875 (985)
Q Consensus 796 ~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl~~~~~~~ 875 (985)
++|||+||||+|.|.+++++.+++|+..+..... .+.....+.+++++||+++.+.++|+||++||..|+++..+..
T Consensus 746 cIPHGGGGPg~gPIgVK~HLapfLP~HpVvs~~~---~~~~~~~gsVsaaP~Gsa~ILpISwaYikmMG~~GL~~as~~A 822 (1001)
T KOG2040|consen 746 CIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSPGR---PEDTSPVGSVSAAPWGSALILPISWAYIKMMGSGGLKDASKIA 822 (1001)
T ss_pred eecCCCCCCCCCccchhhhccccCCCCCccCCCC---CCCCCCccceeccCCCcceeehhHHHHHHHhcccccchhhHHH
Confidence 9999999999999999999999999886643211 1112235567888999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCCCCCCCEEEEeccCCCCH
Q 001989 876 ILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESK 955 (985)
Q Consensus 876 ~~~a~~l~~~L~~g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~~p~~~~lris~t~~~t~ 955 (985)
+.|++|++++|+..++++|.+.++.+.|+|+++.++||+..|+++.+|+|+|+++|+++++++||++++|||.||+..++
T Consensus 823 iLNaNYMakRLe~hYkil~~~~~~~vaHEFIlD~r~fK~~agieavDvAKRL~DYgFHaPTmswPV~gtLMIEPTESE~k 902 (1001)
T KOG2040|consen 823 ILNANYMAKRLESHYKILFRGENGLVAHEFILDLRPFKKTAGIEAVDVAKRLMDYGFHAPTMSWPVAGTLMIEPTESEDK 902 (1001)
T ss_pred hhhhHHHHHHHhhccceeEecCCcceeeeeeeechhhccccCCcHHHHHHHHHhccCCCCccccccCCceEeccCccccH
Confidence 99999999999999999998887889999999999998878999999999999999999999999999999999999999
Q ss_pred HHHHHHHccCChhHHHHh---hccCCc
Q 001989 956 SWTGIVMLSSPSEKKLHR---LKMGRQ 979 (985)
Q Consensus 956 eeId~~~~~~~l~~~~~~---~~~~~~ 979 (985)
+|+|| ||+++..+-++ +.+|+|
T Consensus 903 ~ElDR--fcdAliSIreEI~~ie~G~~ 927 (1001)
T KOG2040|consen 903 AELDR--FCDALISIREEIAQIEEGRQ 927 (1001)
T ss_pred HHHHH--HHHHHHHHHHHHHHHHccCC
Confidence 99999 99988777555 555665
|
|
| >PRK12566 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-168 Score=1498.73 Aligned_cols=868 Identities=55% Similarity=0.944 Sum_probs=794.4
Q ss_pred CCCCccccccCCCCCHHHHHHHHHHhCCCCHHHhhhhcCCCcc-ccCCCCCCCCCCCCCHHHHHHHHHHHhcCCCcccee
Q 001989 92 LKPSDTFARRHNSATPEDQAKMSELVGLDNLDSLIDATVPKSI-RIDSMKFSKFDEGLTESQMIEHMQKLASMNKVYKSF 170 (985)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~ml~~~g~~~~~~l~~~~ip~~~-~~~~~~lp~~~~~~se~e~~~~~~~l~~~n~~~~~~ 170 (985)
+.+.|.|..|||++|++|+++||++||++|+||||+++||+++ ++++++|| +++||.|+++|++++|+||+.+.+|
T Consensus 7 ~~~~~~f~~rh~g~~~~~~~~ML~~iG~~s~d~l~~~~iP~~ir~~~~l~lp---~~~sE~e~~~~~~~~a~kN~~~~~f 83 (954)
T PRK12566 7 LQEPDAFLRRHLGPDAAEQQAMLDALGVASRAELIEQTVPPAIRLNRPLDLP---AALDEQAALARLRGYAEQNQVWTSL 83 (954)
T ss_pred cccccchhhccCCCCHHHHHHHHHhcCccCHHHHhhccCCHHHhcCCCCCCC---CCCCHHHHHHHHHHHHhcCCCcccc
Confidence 5567889999999999999999999999999999977899999 78889997 7899999999999999999999999
Q ss_pred cCCCCCCCCCcHHHHHHHHhCCccccccCCChhhHhhhHHHHHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhh
Q 001989 171 IGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNI 250 (985)
Q Consensus 171 lG~g~y~~~~p~~v~~~i~~~~~~~t~~~pyq~e~sqg~l~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~ 250 (985)
+|+|+|+|++|++|.++|++|++|||+|||||||+|||+||+++|||+|||+|||||.+|+||||++||++||+.|+.++
T Consensus 84 iG~G~y~~~~P~vi~~~i~~~~~~yTaYTPYQpEisQG~Lqal~e~Qtmi~~LtGm~vaNASl~D~atA~aEA~~ma~~~ 163 (954)
T PRK12566 84 IGMGYHGTVTPTVILRNVLENPGWYTAYTPYQPEIAQGRLEALLNFQQMTIDLTGLDLANASLLDEATAAAEAMALAKRV 163 (954)
T ss_pred ccccccCCcCcHHHHHHHHhCchhhhcCCCCCchhhhHHHHHHHHHHHHHHHHhCchhhhhhhccchhHHHHHHHHHHHH
Confidence 99999999999999889999999999999999999999999999999999999999999999999999999999999887
Q ss_pred hcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCchhhhc-cCCCEeEEEEEcCCCCeeeccHHHHHHHHHhCCcEE
Q 001989 251 QKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDLKDIDY-KSGDVCGVLVQYPGTEGEVLDYGDFIKNAHANGVKV 329 (985)
Q Consensus 251 ~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~~~l~~-l~~~t~~V~v~~pn~~G~v~di~~I~~~a~~~gall 329 (985)
+++++++|+|++.+||++++++++|++..|++++. +++++ +++++++|+||+||++|.++|+++|++++|++|+++
T Consensus 164 ~~~k~~~~~v~~~~hP~~~~v~~t~~~~~g~~i~~---~~~~~~~~~~~~~v~vq~P~~~G~i~d~~~i~~~~h~~gal~ 240 (954)
T PRK12566 164 AKSKSNRFFVDEHCHPQTLSVLRTRAEGFGFELVV---DAVDNLAAHAVFGALLQYPDTHGEIRDLRPLIDQLHGQQALA 240 (954)
T ss_pred hhcCCCEEEECCCCCHHHHHHHHHhhhcCCcEEEE---cchhhcCCCCEEEEEEECCCCceEEccHHHHHHHHHHcCCEE
Confidence 64457899999999999999999999999999987 44555 677899999999999999999999999999999999
Q ss_pred EEEecCccccCCCCCCcccceEEEecCccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccc
Q 001989 330 VMATDLLALTILKPPGELGADIVVGSAQRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQ 409 (985)
Q Consensus 330 iV~a~~~~lg~l~~~~~~GaDi~v~s~k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~ 409 (985)
+|++|+++++++++||+|||||+||++|.||+||+|||||+|||+++++++|+||||+||+|+|.+|+++|+|+||||||
T Consensus 241 ~~~~d~laL~ll~~Pge~GADI~vG~~Q~fGvp~~~GGP~ag~~a~~~~~~R~~PGRivG~s~D~~G~~a~~l~LqtREQ 320 (954)
T PRK12566 241 CVAADLLSLLVLTPPGELGADVVLGSTQRFGVPMGYGGPHAAYFACRDDYKRAMPGRIIGVSRDARGNTALRMALQTREQ 320 (954)
T ss_pred EEEeCHHHHhCCCChhhcCCcEEeeCCCcCCCCCCCCCCCeeeeeehHHHHhhCCCCccceeecCCCCeeeehhhhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCCccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCCCcceEEEecC-CHHHH
Q 001989 410 HIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDTVKVKCA-DAHAI 488 (985)
Q Consensus 410 ~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~~~~~~~~~~~-~~~~v 488 (985)
|||||||||||||+|+|+|++|++|+.++|++||++++++++.+++||+++|.+.| +++..+++|++|++++. .+.++
T Consensus 321 HIRReKAtSNICT~qaL~A~~a~~Y~~~~Gp~Gl~~ia~~~~~~a~~l~~~l~~~g-~~~~~~~fF~~~~v~~~~~~~~~ 399 (954)
T PRK12566 321 HIRREKANSNICTAQVLLANIAGFYAVYHGPEGLKRIAQRVHRLTAILAAGLEAKG-IKRLNRHFFDTLTLEVGGAQAAI 399 (954)
T ss_pred HhhhccccchhhHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHhcC-CccccCCccceEEEEccCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999987 99987799999999986 38888
Q ss_pred HHHHHHcCceeeeecCCeEEEEeccCCCHHHHHHHHHHHhCCCCCCCCHHhhhhh-hhccCCCCccCCCCCCCCccccCC
Q 001989 489 ASAAYKIEMNLRVVDSNTVTASFDETTTLEDVDKLFIVFAGGKSVPFTAASLAEE-VETAIPSGLTRESPYLTHPVFNKY 567 (985)
Q Consensus 489 ~~~L~~~GI~~~~~~~~~lris~t~~~t~edId~li~aL~~~~~~~~~~~~l~~~-~~~~ip~~~~~~~~~~~~p~~~~~ 567 (985)
.++..++||+++.++.+.+.+|++|.+|.+|++.++++|...+.. .+.+.+... +...||+.++|+++|+++|||+.+
T Consensus 400 ~~~a~~~~~n~r~~~~~~~~~s~de~~~~~~~~~~~~~f~~~~~~-~~~~~~~~~~~~~~~p~~~~r~~~~~~~p~f~~~ 478 (954)
T PRK12566 400 IESAEAARINLRILGRGRLGVSLDETCDEATVARLFDIFLGADHG-LDVAALDQGALAEGIPAVLQRRTAYLQHPVFNAH 478 (954)
T ss_pred HHHHHHCCCeeEEeCCCeEEEEeCCCCCHHHHHHHHHHhcCCCcc-cchhhhccccccccCchhhhcCCccccCcccccC
Confidence 888889999999988889999999999999999999999632111 011111110 112499999999999999999999
Q ss_pred CCHHHHHHHHHHHhccccCcccccccccccccCCCccccccccccccccccCCCCchhhhhhHHHHHHHHHHHHHHHhCC
Q 001989 568 HTEHELLRYIHLLQSKELSLCHSMIPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGF 647 (985)
Q Consensus 568 ~se~e~~~~l~~l~~~~~~~~~~~~~lG~~t~~~~~~~~~~~~~~~~f~~~~p~~p~e~~~G~~~~~~e~~~~la~l~G~ 647 (985)
+||.|++|||++|+++|.+.+++|+|||+||||+|++.|++|++|++|++.|||||.|++||++|+++|+++++|+++|+
T Consensus 479 ~SE~el~r~~~~La~kn~~~~~~~~~LGsCTmK~n~~~~~~p~s~~eF~t~hPyqp~e~sQG~lq~i~elq~~l~eLtGm 558 (954)
T PRK12566 479 HSETEMLRYLKQLENKDLALNQSMIPLGSCTMKLNATSEMIPITWPEFAQLHPFAPREQAEGYRAMIDELEAWLCAITGF 558 (954)
T ss_pred CCHHHHHHHHHHHHhcCcCcccCcccCcccccCcCcHHhhhcccchhhhcCCCCCchhhhcCHHHHHHHHHHHHHHHHCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcCCCCCCCCHHHHHHHHHhc
Q 001989 648 DSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKGNINIEELRKAAEAN 727 (985)
Q Consensus 648 ~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~d~~g~iD~e~L~~~i~~~ 727 (985)
+.++++++||++|++++++++|.|+.++|..++++||++.+.|++|+.++.+.|++++.+|+|++|.+|+++|+++++++
T Consensus 559 d~~Sl~p~sGA~gE~A~Lmair~yh~~~Ge~~r~~vLIp~saHgtNpasa~~~GieVv~Vp~D~~G~iDle~L~a~I~~~ 638 (954)
T PRK12566 559 DAICMQPNSGAQGEYAGLLAIRRYHRSRGQSQRDICLIPSSAHGTNPASAQMAGMRVVIVECDPDGNVDLDDLKAKAAAA 638 (954)
T ss_pred CeEeecCCchHHHHHHHHHHHHHHHHhcCCCCCCEEEecccccccCHHHHHHCCCEEEEeccCCCCCcCHHHHHHHhhcc
Confidence 99999999999999999999999999998767889999999999999999999999999999989999999999999866
Q ss_pred CCCEEEEEEEcCCCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCccCCcEEEeCCcccccccCCCCCCceE
Q 001989 728 RDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIGADVCHLNLHKTFCIPHGGGGPGMG 807 (985)
Q Consensus 728 ~~~t~~Vvv~~pn~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~g~Di~~~s~hK~l~~p~g~GGPg~G 807 (985)
++++++|++++||+.|++++|+++|+++||++|++++||++|++++.++..|+++|+|++++++||||+.|+|+|||++|
T Consensus 639 ~~~laaVmiT~Pnt~Gv~e~~V~eI~~iah~~Galv~vDgA~~~a~~~l~~Pg~~GADi~~~s~HKtf~~P~G~GGP~vG 718 (954)
T PRK12566 639 GDRLSCLMITYPSTHGVYEEGIREICEVVHQHGGQVYMDGANLNAQVGLARPADIGADVSHMNLHKTFCIPHGGGGPGMG 718 (954)
T ss_pred CCCEEEEEEEecCcCceecchHHHHHHHHHHcCCEEEEEeeChhhccCCCChhhcCCCEEEecCCcccCcCccCCCCccc
Confidence 78999999999999998875799999999999999999999998999998899999999999999999999999999999
Q ss_pred EEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhh
Q 001989 808 PIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLE 887 (985)
Q Consensus 808 ~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~ 887 (985)
++.+++++.+++++... ...+ +++.+++++++++ +++++.+.+||+||..+|.+ +++.++.+..+++|++++|.
T Consensus 719 ~iav~~~L~pfLp~~P~-~d~~-G~~~r~ga~S~~~---~gsa~~l~~A~~Yi~~lG~e-Lk~aa~~ailnAnYla~rL~ 792 (954)
T PRK12566 719 PIGVRAHLAPFVANHPV-VPVE-GPDPNNGAVSAAP---WGSASILPISWMYIAMMGPQ-LADASEVAILSANYLANQLG 792 (954)
T ss_pred hhhhhhhhhhhccCCCC-cCCC-CCCCCCCceeecc---cchHHHHHHHHHHHHHHCHH-HHHHHHHHHHHHHHHHHHhH
Confidence 99999988888775421 0000 1222334455554 56888899999999999999 99888888999999999998
Q ss_pred ccCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCCCCCCCEEEEeccCCCCHHHHHHHHccCCh
Q 001989 888 KHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKSWTGIVMLSSPS 967 (985)
Q Consensus 888 ~g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~~p~~~~lris~t~~~t~eeId~~~~~~~l 967 (985)
+++++.+.++.++++|++++++..+++..+++..+++++|.++||++++++||+.+++|||||++++++|||+ |+++|
T Consensus 793 ~~~~v~~~~~~~~~~hEfii~~~~l~~~~g~~~~dvakRL~d~Gihapt~~fPv~~~LmIepTE~eskeEIDr--f~eAL 870 (954)
T PRK12566 793 GAFPVLYRGRNERVAHECILDLRPLKAQTGISEEDVAKRLMDYGFHAPTMSFPVPGTLMVEPTESESKAELDR--FVEAM 870 (954)
T ss_pred hhCCCCcCCCCCCeeeEEEEEccccccccCCCHHHHHHHHHHCCcEEeEEeeccCCEEEEEeeeeCCHHHHHH--HHHHH
Confidence 8888877544457899999998765544567889999999999999998889999999999999999999999 88999
Q ss_pred hHHHHhhc
Q 001989 968 EKKLHRLK 975 (985)
Q Consensus 968 ~~~~~~~~ 975 (985)
+++.++++
T Consensus 871 ~~I~~e~~ 878 (954)
T PRK12566 871 LSIRAEIG 878 (954)
T ss_pred HHHHHHHH
Confidence 88887743
|
|
| >TIGR00461 gcvP glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-164 Score=1474.93 Aligned_cols=866 Identities=59% Similarity=0.972 Sum_probs=795.9
Q ss_pred cCCCCCHHHHHHHHHHhCCCCHHHhhhhcCCCcc-ccCCCCCCCCCCCCCHHHHHHHHHHHhcCCCccceecCCCCCCCC
Q 001989 101 RHNSATPEDQAKMSELVGLDNLDSLIDATVPKSI-RIDSMKFSKFDEGLTESQMIEHMQKLASMNKVYKSFIGMGYYNTH 179 (985)
Q Consensus 101 ~~~~~~~~~~~~ml~~~g~~~~~~l~~~~ip~~~-~~~~~~lp~~~~~~se~e~~~~~~~l~~~n~~~~~~lG~g~y~~~ 179 (985)
|||+++++|+++||++||++|+||||++.||+++ ++++++|| +++||.|+++||++|+++|+.+.+|+|+|+|+|+
T Consensus 1 rh~g~~~~~~~~ML~~iG~~s~d~l~~~~iP~~i~~~~~l~lp---~~~sE~e~~~~~~~la~~N~~~~~fig~G~y~~~ 77 (939)
T TIGR00461 1 RHLGPSPSDQKKMLKTMGYSDLNALIEQLVPPNILKRRPLQLE---APSKEYEALAHLKKIASKNHKFKSYIGMGYYGTI 77 (939)
T ss_pred CCCCcCHHHHHHHHHhcCCCCHHHHhhccCCHHHhcCCCCCCC---CCCCHHHHHHHHHHHHhcCCCccccCCCCcCCCc
Confidence 8999999999999999999999999998899999 88889997 7899999999999999999999999999999999
Q ss_pred CcHHHHHHHHhCCccccccCCChhhHhhhHHHHHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEE
Q 001989 180 VPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFI 259 (985)
Q Consensus 180 ~p~~v~~~i~~~~~~~t~~~pyq~e~sqg~l~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vl 259 (985)
+|++|.|++++||+|||+|||||||+|||+||+++|||+++|+||||+.+|+||+|++|+++||+.||.+..++++++|+
T Consensus 78 ~p~~i~r~v~~~p~~~TaytPyQ~EisQG~Le~l~e~Qt~i~eLtGm~~aNaSl~d~atA~aEa~~~a~~~~~~~~~~vl 157 (939)
T TIGR00461 78 LPPVIQRNLLENPGWYTAYTPYQPEISQGRLEALLNFQTVVSDLTGLPVANASLLDEGTAAAEAMALSFNVSKKKANKFF 157 (939)
T ss_pred CChHHHHHHHhCchhhhcCCCCChhhhhHHHHHHHHHHHHHHHHHCCChhhhhccchhhHHHHHHHHHHHhhcCCCCEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999776544668999
Q ss_pred EcCCCChhHHHHHHHhhcCCCeEEEEeCchhhhc-cCCCEeEEEEEcCCCCeeeccHHHHHHHHHhCCcEEEEEecCccc
Q 001989 260 IASNCHPQTIDICITRADGFDIKVVVSDLKDIDY-KSGDVCGVLVQYPGTEGEVLDYGDFIKNAHANGVKVVMATDLLAL 338 (985)
Q Consensus 260 v~~~~H~s~~~~~~~~a~~~gi~v~~v~~~~l~~-l~~~t~~V~v~~pn~~G~v~di~~I~~~a~~~galliV~a~~~~l 338 (985)
|++++||+++.+++++++..|++++.+|.++|+. + ++++|++|+||++|.++|+++|++++|++|++++|++|++++
T Consensus 158 v~~~~hP~~~~v~~t~a~~~g~~v~~~~~~~l~~~~--~~~~v~~q~Pn~~G~ied~~~i~~~~h~~gal~~~~ad~~al 235 (939)
T TIGR00461 158 VAKDLHPQTKSVLHTRAKPFGIEVIVVDCSDIKKAV--DVFGCLLQYPATDGSILDYKQLIDALHSHKSLVSVAADLMAL 235 (939)
T ss_pred ECCCCCcchHHHHHHHHHhcCcEEEEEcHHHHhhcC--CEEEEEEECCCCCeEEecHHHHHHHHHHcCCEEEEEechHHh
Confidence 9999999999999999999999999999988876 5 689999999999999999999999999999999999999999
Q ss_pred cCCCCCCcccceEEEecCccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCC
Q 001989 339 TILKPPGELGADIVVGSAQRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATS 418 (985)
Q Consensus 339 g~l~~~~~~GaDi~v~s~k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~ats 418 (985)
+++++|++|||||+|+++|+||+||+|||||+|||+++++++|+||||++|+|+|.+|+++|+|+|||||||||||||||
T Consensus 236 ~ll~~Pge~GaDi~vg~~q~fg~p~g~GGP~aG~~a~~~~l~r~lPgrivG~s~D~~G~~~~~l~LqtReqhIrRekAtS 315 (939)
T TIGR00461 236 TLLTPPGHYGADIVLGSSQRFGVPMGYGGPHAAFFAVKDEYNRKMPGRIVGVSKDALGNTALRLALQTREQHIRRDKATS 315 (939)
T ss_pred CCcCCHHHcCCcEEeeCCCccCCCCCCCCCceeeeeecHhhHhhCCCCceeEEecCCCCccceeecccccccccccccCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCCCcceEEEecC--CHHHHHHHHHHcC
Q 001989 419 NICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDTVKVKCA--DAHAIASAAYKIE 496 (985)
Q Consensus 419 ni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~~~~~~~~~~~--~~~~v~~~L~~~G 496 (985)
||||++++++++|++|+.++|++|+++++++++.+++||+++|++.| +++..+++|++|+++++ .++++.++|.++|
T Consensus 316 NICt~qaL~a~~a~~Y~~~~G~~GL~~iA~~~~~~a~~l~~~L~~~G-~~~~~~~fF~~~~v~~~~~~~~~i~~~~~~~g 394 (939)
T TIGR00461 316 NICTAQVLLANVASSYCVYHGPKGLKNIARRIHSLTSILANGLENDP-HELINKTWFDTLTVKVGNGISSELLKAAEEFN 394 (939)
T ss_pred chhHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHhCC-CcccCCCccceEEEEeCCCCHHHHHHHHHHCC
Confidence 99999999999999999999999999999999999999999999988 99987789999999987 3899999999999
Q ss_pred ceeeeecCCeEEEEeccCCCHHHHHHHHHHHhCCCCCCCCHHhhhhhhhccCCCCccCCCCCCCCccccCCCCHHHHHHH
Q 001989 497 MNLRVVDSNTVTASFDETTTLEDVDKLFIVFAGGKSVPFTAASLAEEVETAIPSGLTRESPYLTHPVFNKYHTEHELLRY 576 (985)
Q Consensus 497 I~~~~~~~~~lris~t~~~t~edId~li~aL~~~~~~~~~~~~l~~~~~~~ip~~~~~~~~~~~~p~~~~~~se~e~~~~ 576 (985)
|+++....+.+++|+||++|++|||.|+++|...+......+.+.+.+...||+.++|+++++.+|||+.++||.|++||
T Consensus 395 i~l~~~~~~~i~~s~~E~~t~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~r~~~~~~~~~f~~~~sE~e~~r~ 474 (939)
T TIGR00461 395 INLRAVDTTTVGIALDETTTKADVENLLKVFDGEDNHGLSSQFLSEDVSNSFPREFQRTDEILRNEVFNMYHSETEMLRY 474 (939)
T ss_pred CeeeecCCCEEEEEeecCCCHHHHHHHHHHhcCCCccccchhhhhhhhcccCchhhhccCcccCCcccccCCCHHHHHHH
Confidence 99987666799999999999999999999996321101011111111112499999999999999999999999999999
Q ss_pred HHHHhccccCcccccccccccccCCCccccccccccccccccCCCCchhhhhhHHHHHHHHHHHHHHHhCCCccceecCc
Q 001989 577 IHLLQSKELSLCHSMIPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFDSFSLQPNA 656 (985)
Q Consensus 577 l~~l~~~~~~~~~~~~~lG~~t~~~~~~~~~~~~~~~~f~~~~p~~p~e~~~G~~~~~~e~~~~la~l~G~~~~~~~~~s 656 (985)
|++|+++|.+.+++++++|+|||++|+..++.+++|++|++||||||.+++||++++++|+++|+|+++|++.+++++++
T Consensus 475 ~~~L~~kn~~~~~~fi~lGsctmk~na~v~~l~~s~~ef~t~hPyqPe~~sqG~lq~i~elq~~l~eltGmd~~Sl~p~a 554 (939)
T TIGR00461 475 LHRLESKDLALNNSMIPLGSCTMKLNATAEMMPITWPEFSNIHPFQPSNQVEGYQELIAQLEKWLCSITGFDAISLQPNS 554 (939)
T ss_pred HHHHHhcCCCccccCCCCccCCCccCHHHHHHHhcchhhcCcCCCCchHHhHHHHHHHHHHHHHHHHHHCCCCcccCCch
Confidence 99999999998899999999999999999999999999999999999669999999999999999999999998999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcCCCCCCCCHHHHHHHHHhcCCCEEEEEE
Q 001989 657 GAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKGNINIEELRKAAEANRDNLSTLMV 736 (985)
Q Consensus 657 Ga~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv 736 (985)
|++|+.++++++|.|+..+|..++++|++|.++||++|+++++.|++++.||+|++|.+|+++|++++++++++|++|++
T Consensus 555 GA~gE~agL~aiR~y~~~rge~~R~~vlip~saHgtnPasa~~~G~~Vv~V~~d~~G~iDle~L~~~i~~~~~~taaV~i 634 (939)
T TIGR00461 555 GAQGEYAGLRVIRSYHESRGENHRNICLIPVSAHGTNPASAAMAGMQVVPVNCDQDGNIDLVDLKNKAEQHGDELAAVMV 634 (939)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccccCcCHHHHHHCCCEEEEeccCCCCCcCHHHHHHHHhhcCCceEEEEE
Confidence 99999889999999998888666788999999999999999999999999999989999999999999865569999999
Q ss_pred EcCCCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCccCCcEEEeCCcccccccCCCCCCceEEEEEccccc
Q 001989 737 TYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLA 816 (985)
Q Consensus 737 ~~pn~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~ 816 (985)
++||++|++++|+++|+++||++|++++||+||++++.++.+|+++|+|+++++.||+|+.|+|+||||+|++++++++.
T Consensus 635 T~pst~G~~e~~I~eI~~iah~~G~~v~VDgAq~~al~~l~~Pg~~GaDi~~~s~HKtf~~P~G~GGPg~G~i~vr~~L~ 714 (939)
T TIGR00461 635 TYPSTHGVFEPTIQHACDIVHSFGGQVYLDGANMNAQVGLTSPGDLGADVCHLNLHKTFCIPHGGGGPGMGPIGVKSHLI 714 (939)
T ss_pred EeCCcCceecccHHHHHHHHHHcCCEEEEEecChhhCCCCCCccccCCCEEEecCCccCCCCCCCCCCCeEEEEEhhhch
Confidence 99999999985699999999999999999999998888888999999999999999999999999999999999999999
Q ss_pred CcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhccCCeeecC
Q 001989 817 PFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRG 896 (985)
Q Consensus 817 ~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~g~~l~~~~ 896 (985)
+++|++.++.+.+.. +++...+.+++.++|+++.+.++|+||+.+|.+|+++..+....+|+|++++|++++++++.+
T Consensus 715 ~~lPg~~v~~t~d~~--greq~Iga~s~~~~g~a~~~l~a~~yi~~lG~~GL~~~a~~ailnAnYl~~rL~~~~~~l~~~ 792 (939)
T TIGR00461 715 PFLPKHDVVSMITGI--GGSKSIGSVSAAPYGSASILPISWMYIKMMGNEGLPKASVVAILNANYMATRLKDHYPILFVG 792 (939)
T ss_pred hhcCCCcccccccCC--CCccccccccccccCcHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHhhccCcccccC
Confidence 999998776543210 122222233333567889999999999999999999999999999999999999888888866
Q ss_pred CCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCCCCCCCEEEEeccCCCCHHHHHHHHccCChhHHHHhhcc
Q 001989 897 VNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRLKM 976 (985)
Q Consensus 897 ~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~~~ 976 (985)
+.++++|+|+++++++++..|++..+|+++|.++|++.++++||+.++++|+||+.+|++|||+ |++++.++.++++.
T Consensus 793 ~~~~~~hEfv~~~~~~~~~~g~~~~dIakrL~d~G~hapt~~~pv~g~lmiepTE~eskeelD~--f~~al~~I~~e~~~ 870 (939)
T TIGR00461 793 TLKHVAHECILDLRPLKAKTGIEAIDVAKRLQDYGFHAPTLSFPVPGTLMVEPTESESLEELDR--FCDAMIAIKEEINA 870 (939)
T ss_pred CCCceeEEEEEeccchhhhcCCCHHHHHHHHHhCCeeccccCCccCCeEEEEeeccCCHHHHHH--HHHHHHHHHHHHHH
Confidence 5567899999999865555678899999999999999999889999999999999999999999 88999888776654
|
This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment. |
| >PLN02414 glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-159 Score=1456.71 Aligned_cols=882 Identities=85% Similarity=1.329 Sum_probs=798.5
Q ss_pred CCCCccccccCCCCCHHHHHHHHHHhCCCCHHHhhhhcCCCccccCCCCCCCCCCCCCHHHHHHHHHHHhcCCCccceec
Q 001989 92 LKPSDTFARRHNSATPEDQAKMSELVGLDNLDSLIDATVPKSIRIDSMKFSKFDEGLTESQMIEHMQKLASMNKVYKSFI 171 (985)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~ml~~~g~~~~~~l~~~~ip~~~~~~~~~lp~~~~~~se~e~~~~~~~l~~~n~~~~~~l 171 (985)
+.+.|.|..||||||++|+++||++||++|+||||+++||+++++++++||.+.+++||.|+++||++|+.+|+.+.+|+
T Consensus 29 ~~~~~~f~~r~i~~~~~~~~~ML~~ig~~s~d~l~~~~iP~~i~~~~l~lp~~~~~~sE~e~~~~~~~la~kN~~~~~fi 108 (993)
T PLN02414 29 LKPSDTFPRRHNSATPEEQKAMAEYCGFDSLDALIDATVPKSIRLDSMKLSKYDEGLTESQMLEHMKSLASKNKVFKSYI 108 (993)
T ss_pred cccccchhhccCCcCHHHHHHHHHhcCccCHHHHhhccCCHHHhcCCCCCCCCCCCCCHHHHHHHHHHHHhcCCcccccc
Confidence 34466899999999999999999999999999999778999995557888533368999999999999999999999999
Q ss_pred CCCCCCCCCcHHHHHHHHhCCccccccCCChhhHhhhHHHHHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhh
Q 001989 172 GMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQ 251 (985)
Q Consensus 172 G~g~y~~~~p~~v~~~i~~~~~~~t~~~pyq~e~sqg~l~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~ 251 (985)
|+|+|+|++|++|.++++++++|||+|||||||+|||+||+++|||+++|+|+||+++|+||++++|+++|+++|+.++.
T Consensus 109 G~G~y~~~~P~~v~~~i~~~~~~~TaytPYqaEisQG~lqal~~~Qt~ia~LtG~~~anaSL~d~aTAaaea~~~a~~~~ 188 (993)
T PLN02414 109 GMGYYNTHVPPVILRNILENPGWYTQYTPYQAEIAQGRLESLLNYQTMITDLTGLPMSNASLLDEGTAAAEAMAMCNNIL 188 (993)
T ss_pred CCCCCCccCCHHHHHHHHhChHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHhCCChhhEeecCChHHHHHHHHHHHhcc
Confidence 99999999999998899999999999999999999999999999999999999999999999999999999999998776
Q ss_pred cCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCchhhhccCCCEeEEEEEcCCCCeeeccHHHHHHHHHhCCcEEEE
Q 001989 252 KGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDLKDIDYKSGDVCGVLVQYPGTEGEVLDYGDFIKNAHANGVKVVM 331 (985)
Q Consensus 252 ~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~~~l~~l~~~t~~V~v~~pn~~G~v~di~~I~~~a~~~galliV 331 (985)
++++++|++++.+||+++.+|+++++..|++++.+|.++....++++.++++|+||++|.+.|+++|+++||++|++++|
T Consensus 189 ~g~~~~VlVs~~~hP~~~~v~~t~a~~~GieV~~v~~~~~~~~~~~v~~vlvq~P~~~G~v~dv~~I~~~ah~~GaL~iV 268 (993)
T PLN02414 189 KGKKKKFLIASNCHPQTIDVCQTRADGLGLEVVVADEKDFDYSSGDVCGVLVQYPATDGEVLDYAEFVKNAHANGVKVVM 268 (993)
T ss_pred cCCCCEEEEcCccCHhHHHHHHHhhhhcCCEEEEecchhhccccCceEEEEEecCCCCeEEcCHHHHHHHHHHcCCEEEE
Confidence 45668999999999999999999999999999999876532234578889999999999999999999999999999999
Q ss_pred EecCccccCCCCCCcccceEEEecCccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccc
Q 001989 332 ATDLLALTILKPPGELGADIVVGSAQRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHI 411 (985)
Q Consensus 332 ~a~~~~lg~l~~~~~~GaDi~v~s~k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~i 411 (985)
++|+++++.+++|+++||||+++++|+|++|+++|||++|||++++++.+++|||++||++|.+|+++|+++||+|||||
T Consensus 269 aad~lal~~l~~pge~GADi~vgsgqKwg~P~G~GGP~aGflavr~~~~r~~PgriVG~s~d~~g~~~~~l~LqtReqhi 348 (993)
T PLN02414 269 ATDLLALTMLKPPGEWGADIVVGSAQRFGVPMGYGGPHAAFLATSQEYKRLMPGRIIGVSVDSSGKPALRMAMQTREQHI 348 (993)
T ss_pred EECHHHhcCCCCHhhccCcEEEECCCccccCCCCCCCCeeEEEECHHHHhhCCCcccCcccCCCCCcccccccccccchh
Confidence 99999999998999999999999999999999999999999999999999999999999999989999999999999999
Q ss_pred cccccCCCccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCCCcceEEEecCCHHHHHHH
Q 001989 412 RRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDTVKVKCADAHAIASA 491 (985)
Q Consensus 412 rre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~~~ 491 (985)
|||+|||||||++++++.++++|+.++|++|+++++++++++++|++++|.+.| +++..+++|++|+|+.+++.++.++
T Consensus 349 RrEkaTsNict~qaL~A~la~~y~~~~g~~Gl~~Ia~ri~~la~~l~~~L~~~G-~~~~~~~~f~~vt~~~~~~~~v~~~ 427 (993)
T PLN02414 349 RRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGVFAAGLKKLG-FQVQSLPFFDTVKVKCSDADAIADA 427 (993)
T ss_pred hhcccccchhHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhcC-CccCCCCCcCeEEEecCCHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999888 9988778899999988668889999
Q ss_pred HHHcCceeeeecCCeEEEEeccCCCHHHHHHHHHHHhCCCCCCCCHHhhhhhhhccCCCCccCCCCCCCCccccCCCCHH
Q 001989 492 AYKIEMNLRVVDSNTVTASFDETTTLEDVDKLFIVFAGGKSVPFTAASLAEEVETAIPSGLTRESPYLTHPVFNKYHTEH 571 (985)
Q Consensus 492 L~~~GI~~~~~~~~~lris~t~~~t~edId~li~aL~~~~~~~~~~~~l~~~~~~~ip~~~~~~~~~~~~p~~~~~~se~ 571 (985)
|.++||+++....+.+|+|+|++||++|||+|+++|...+......+.+...+...||+.++|+++++++|+|+.++||.
T Consensus 428 L~~~gI~l~~~~~~~lrvs~~e~~T~edId~L~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~r~~~~l~~p~f~~~~se~ 507 (993)
T PLN02414 428 AAKVGINLRVVDANTVTVSFDETTTLEDVDKLFKVFAGGKPVPFTAESLAPEVDSSIPSSLARESPYLTHPIFNQYHSEH 507 (993)
T ss_pred HHHCCCeeEEecCCeEEEEeeccCCHHHHHHHHHHHcccccccchhhhhhhhhcccCchhhhccCccccCcccccccCHH
Confidence 99999999887778899999999999999999999974311110011121111225999999999999999999999999
Q ss_pred HHHHHHHHHhccccCcccccccccccccCCCccccccccccccccccCCCCchhhhhhHHHHHHHHHHHHHHHhCCCccc
Q 001989 572 ELLRYIHLLQSKELSLCHSMIPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFDSFS 651 (985)
Q Consensus 572 e~~~~l~~l~~~~~~~~~~~~~lG~~t~~~~~~~~~~~~~~~~f~~~~p~~p~e~~~G~~~~~~e~~~~la~l~G~~~~~ 651 (985)
|++||+.+|+++|++++++|++|||||||+|+..++.+++|++|.++|||+|.++.||++++++++++++++++|++.+.
T Consensus 508 ~~~r~~~~l~~~~~~~~~~~~plgsctmk~n~~~~~~~~~~~~~~~~hp~~p~~~~~g~~~~~~~~r~~la~i~g~~~v~ 587 (993)
T PLN02414 508 ELLRYLHRLQNKDLSLVHSMIPLGSCTMKLNATTEMMPVTWPEFANIHPFAPVDQAQGYQEMFEDLGDLLCEITGFDSFS 587 (993)
T ss_pred HHHHHHHHHhhcccccccCCccCcccccccCchhhhhhhcCcchhhcCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998889
Q ss_pred eecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcCCCCCCCCHHHHHHHHHhcCCCE
Q 001989 652 LQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKGNINIEELRKAAEANRDNL 731 (985)
Q Consensus 652 ~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~d~~g~iD~e~L~~~i~~~~~~t 731 (985)
|++|+|++|+++.+++++.|+..+|+.++++||+|.++|++|+..+.+.|++++.+|+|++|.+|+++|+++|+.+.++|
T Consensus 588 f~pnaga~ge~a~~~vi~~~~~~~Gd~~r~~vli~~~aH~sn~a~a~~~G~~vv~v~~d~~G~vDle~L~~~i~~~~~~t 667 (993)
T PLN02414 588 LQPNAGAAGEYAGLMVIRAYHLSRGDHHRNVCIIPVSAHGTNPASAAMCGMKIVVVGTDAKGNINIEELRKAAEAHKDNL 667 (993)
T ss_pred EcCCCcHHHHHHHHHHHHHHHhccCCCCCCEEEeCCCcCccCHHHHHHCCCEEEEeccCCCCCcCHHHHHHHHhccCCCe
Confidence 99999999999999999999876665467799999999999999999999999999999899999999999998555689
Q ss_pred EEEEEEcCCCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCccCCcEEEeCCcccccccCCCCCCceEEEEE
Q 001989 732 STLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIGADVCHLNLHKTFCIPHGGGGPGMGPIGV 811 (985)
Q Consensus 732 ~~Vvv~~pn~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~ 811 (985)
++|++++||+.|.+..||++|+++||++|++++||++|+++++++..|+++|+|+++++.||||+.|+|+||||+|++++
T Consensus 668 a~V~vt~pSn~gg~e~~I~eI~~iah~~Galv~vDgAq~~a~~~l~~p~~~GaD~~~~s~HK~f~~P~G~GGPg~G~l~~ 747 (993)
T PLN02414 668 AALMVTYPSTHGVYEEGIDEICDIIHDNGGQVYMDGANMNAQVGLTSPGFIGADVCHLNLHKTFCIPHGGGGPGMGPIGV 747 (993)
T ss_pred EEEEEECCCccccccchHHHHHHHHHHcCCEEEEEecCHHhccCcCCccccCCCEEEecCCccCCcCcccCCCCeeeEEE
Confidence 99999999876666558999999999999999999999999988889999999999999999999999999999999999
Q ss_pred cccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhccCC
Q 001989 812 KKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYP 891 (985)
Q Consensus 812 ~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~g~~ 891 (985)
++++.+++|++.++.+....++......+.+.++++|+++.+.+||+||..+|.+|+++.++++..+++|++++|.++++
T Consensus 748 ~~~L~p~lPg~~v~~~~~~~~r~~~s~iGt~~~a~~g~al~l~~A~~yi~~lG~~Gl~~~a~~a~~nAnYl~~rL~~~~~ 827 (993)
T PLN02414 748 KKHLAPFLPSHPVVPTGGIPRPEKTQPLGTISAAPWGSALILPISYTYIAMMGSEGLTDASKIAILNANYMAKRLEGHYP 827 (993)
T ss_pred chhhcccCCCCccccCCCcccccCCCCcCCccchhhhhHHHHHHHHHHHHHHCHhHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 99999999998766533211111111122333357889999999999999999999999999999999999999988888
Q ss_pred eeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCCCCCCCEEEEeccCCCCHHHHHHHHccCChhHHH
Q 001989 892 ILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKSWTGIVMLSSPSEKKL 971 (985)
Q Consensus 892 l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~~ 971 (985)
+.+.++.++++|+|+++++.+++..|+++.+++++|.++||++++++||+++++||+||++++++|||+ |+++++++.
T Consensus 828 ~~~~~~~~~~~hEfv~~~~~l~~~~g~~~~di~krL~d~Gihapt~~~pv~~~lmiepTE~~skeelDr--f~~al~~i~ 905 (993)
T PLN02414 828 VLFRGKNGTCAHEFIIDLRPFKNTAGIEPEDVAKRLMDYGFHAPTMSWPVPGTLMIEPTESESKAELDR--FCDALISIR 905 (993)
T ss_pred ccccCCCCCeeeeEEEeccccccccCCCHHHHHHHHHHcCcEEeeeccccCCEEEEEeeeeCCHHHHHH--HHHHHHHHH
Confidence 887665568999999998765544567889999999999999998889999999999999999999999 889998888
Q ss_pred Hhhcc
Q 001989 972 HRLKM 976 (985)
Q Consensus 972 ~~~~~ 976 (985)
.+.+.
T Consensus 906 ~e~~~ 910 (993)
T PLN02414 906 EEIAD 910 (993)
T ss_pred HHHHH
Confidence 77653
|
|
| >PRK05367 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-154 Score=1422.82 Aligned_cols=867 Identities=61% Similarity=1.032 Sum_probs=793.8
Q ss_pred CCCccccccCCCCCHHHHHHHHHHhCCCCHHHhhhhcCCCcc-ccCCCCCCCCCCCCCHHHHHHHHHHHhcCCCccceec
Q 001989 93 KPSDTFARRHNSATPEDQAKMSELVGLDNLDSLIDATVPKSI-RIDSMKFSKFDEGLTESQMIEHMQKLASMNKVYKSFI 171 (985)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~ml~~~g~~~~~~l~~~~ip~~~-~~~~~~lp~~~~~~se~e~~~~~~~l~~~n~~~~~~l 171 (985)
.+.|+|+.||||||++|+++||++||++|+||||++.||+++ ++++++|| +++||.|+++||++|++||+.+.+|+
T Consensus 5 ~~~~~~~~~~i~~~~~~~~~ml~~~g~~s~~~l~~~~iP~~i~~~~~l~lp---~~~sE~e~~~~~~~la~~N~~~~~~i 81 (954)
T PRK05367 5 ENSDAFARRHIGPSAADQQAMLAALGADSLDALIDQAVPASIRLAEPLDLP---AALSEAEALAELRAIASKNKVFRSYI 81 (954)
T ss_pred cccccccccCCCcCHHHHHHHHHhcCCCCHHHHhhhhCCHHHhcCCCCCCC---CCCCHHHHHHHHHHHHhcCCCCCccc
Confidence 456789999999999999999999999999999998899999 88889997 78999999999999999999999999
Q ss_pred CCCCCCCCCcHHHHHHHHhCCccccccCCChhhHhhhHHHHHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhh
Q 001989 172 GMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQ 251 (985)
Q Consensus 172 G~g~y~~~~p~~v~~~i~~~~~~~t~~~pyq~e~sqg~l~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~ 251 (985)
|+|+|+|++|++|.++|++||+|||+|||||||+|||+||++++||+++|+|+||+++|+|+++++|+++|+++|++++.
T Consensus 82 g~G~y~~~~P~vi~~~i~~~~~~~t~ytPyQ~EisQG~Leal~~~Qt~la~LtG~~~anaSl~d~aTAa~ea~~~a~~~~ 161 (954)
T PRK05367 82 GQGYYGTHTPPVILRNILENPAWYTAYTPYQPEISQGRLEALLNFQTMVADLTGLEIANASLLDEATAAAEAMALAKRVS 161 (954)
T ss_pred CCCCCCCcCcHHHHHHHHhCcchhhccCCCChHHHHHHHHHHHHHHHHHHHHHCCChhhccccccHHHHHHHHHHhhhhc
Confidence 99999999999998899999999999999999999999999999999999999999999999999999999999998775
Q ss_pred cCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCchh-hhccCCCEeEEEEEcCCCCeeeccHHHHHHHHHhCCcEEE
Q 001989 252 KGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDLKD-IDYKSGDVCGVLVQYPGTEGEVLDYGDFIKNAHANGVKVV 330 (985)
Q Consensus 252 ~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~~~-l~~l~~~t~~V~v~~pn~~G~v~di~~I~~~a~~~galli 330 (985)
++++++|++++.+||+++.+|+++++..|+++++++.++ +. ++++.+|++|+||++|.+.|+++|+++||++|++++
T Consensus 162 ~~~~~~vlv~~~~hP~~~~v~~t~a~~~G~ev~~~~~~~d~~--~~~~~~vlvq~p~~~G~i~d~~~i~~~ah~~Gal~~ 239 (954)
T PRK05367 162 KSKSNRFFVDDDVHPQTLDVLRTRAEPLGIEVVVGDAAKALD--HDDVFGVLLQYPGTSGEVRDYTALIAAAHARGALVA 239 (954)
T ss_pred cCCCCEEEEcCccCHHHHHHHHHHHHhCCCEEEEecCccCCC--cccEEEEEEecCCCCeeeccHHHHHHHHHHcCCEEE
Confidence 334689999999999999999999999999999998743 32 457889999999999999999999999999999999
Q ss_pred EEecCccccCCCCCCcccceEEEecCccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeeccccccc
Q 001989 331 MATDLLALTILKPPGELGADIVVGSAQRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQH 410 (985)
Q Consensus 331 V~a~~~~lg~l~~~~~~GaDi~v~s~k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~ 410 (985)
|++++.+++++.+|+++||||+++++|+|++|+++||||+|||++++++.++||||++||++|.+|+++|+|++||||||
T Consensus 240 vda~~~Al~~l~~pge~GaDi~vgs~qkfg~P~g~GGP~aGflavr~~~~r~lpgrivG~s~d~~g~~~~~lalqtReqh 319 (954)
T PRK05367 240 VAADLLALTLLTPPGEMGADIAVGSAQRFGVPMGFGGPHAAYFAVRDAYKRSMPGRIVGVSVDAAGNPALRLALQTREQH 319 (954)
T ss_pred EEehhhhccCCCChhhcCCCEEEeeCcccCCCCCCCCCCEEEEEECHHHHhhCCCCeeeeecccCCCccccccccccccc
Confidence 99888899999999999999999999999999999999999999999999999999999999988999999999999999
Q ss_pred ccccccCCCccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCCCcceEEEecCC-HHHHH
Q 001989 411 IRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDTVKVKCAD-AHAIA 489 (985)
Q Consensus 411 irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~-~~~v~ 489 (985)
||||+|||||||+++++++++++|+.++|++|+++++++++.+++|++++|++.| +++..+++|++++++.+. +.++.
T Consensus 320 iRrekaTsNict~qaL~a~~a~~y~~~~g~~Gl~~Ia~~~~~la~~l~~~L~~~G-~~~~~~~~f~~~~~~~~~~~~~i~ 398 (954)
T PRK05367 320 IRREKATSNICTAQVLLAVMASMYAVYHGPEGLKAIARRVHRLAAILAAGLRALG-LEVVHDSFFDTLTVEVGGDAAAVL 398 (954)
T ss_pred ccccccccccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcC-cccCCCCCCCeEEEeCCCCHHHHH
Confidence 9999999999999999999999999999999999999999999999999998877 998877788999998864 89999
Q ss_pred HHHHHcCceeeeecCCeEEEEeccCCCHHHHHHHHHHHhCCCCCCCCHHhhhhhh----hccCCCCccCCCCCCCCcccc
Q 001989 490 SAAYKIEMNLRVVDSNTVTASFDETTTLEDVDKLFIVFAGGKSVPFTAASLAEEV----ETAIPSGLTRESPYLTHPVFN 565 (985)
Q Consensus 490 ~~L~~~GI~~~~~~~~~lris~t~~~t~edId~li~aL~~~~~~~~~~~~l~~~~----~~~ip~~~~~~~~~~~~p~~~ 565 (985)
++|.++||+++...++.+|+|+||++|++|||+|+++|+..+. ..+.+...+ ...||+.++|+++++.+|||+
T Consensus 399 ~~l~~~gi~~~~~~~~~l~is~~e~~t~~did~l~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~f~ 475 (954)
T PRK05367 399 ARALAAGINLRRVDDDHVGISLDETTTREDLAALLAVFGGAAL---DVDALDADVADASASALPAALLRTSAYLTHPVFN 475 (954)
T ss_pred HHHHHCCceeccccCCEEEEEecccCCHHHHHHHHHHHccccc---chhhhhhhhcccccccCCHHHhcCCcccCCcccC
Confidence 9999999999876678999999999999999999999984321 111111111 124999999999999999999
Q ss_pred CCCCHHHHHHHHHHHhccccCcccccccccccccCCCccccccccccccccccCCCCchhhhhhHHHHHHHHHHHHHHHh
Q 001989 566 KYHTEHELLRYIHLLQSKELSLCHSMIPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTIT 645 (985)
Q Consensus 566 ~~~se~e~~~~l~~l~~~~~~~~~~~~~lG~~t~~~~~~~~~~~~~~~~f~~~~p~~p~e~~~G~~~~~~e~~~~la~l~ 645 (985)
.++||.|++|||++|++||.+++++|++||+|||++|+..++.+++|++|.+||||||.|++||++++++++++|+++++
T Consensus 476 ~~~sE~e~~r~~~~l~~kn~~~~~~~i~lGsct~~~~p~~~~~~~~~~~f~~~hP~qp~e~~qG~l~~i~e~q~~l~elt 555 (954)
T PRK05367 476 RYHSETEMMRYLRRLEDKDLALDRSMIPLGSCTMKLNAAAEMIPITWPEFANLHPFAPAEQAAGYRELIDQLEAWLAEIT 555 (954)
T ss_pred CCCCHHHHHHHHHHHHhcCcCcccceeeCCcCCCcCCHHHHHHHHhCccccccCCCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcCCCCCCCCHHHHHHHHH
Q 001989 646 GFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKGNINIEELRKAAE 725 (985)
Q Consensus 646 G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~d~~g~iD~e~L~~~i~ 725 (985)
|++.+++++++|++|++++++++|.|+.++|..++++|++++.+|+++++++.+.|++++.++++.+|.+|+++|+++++
T Consensus 556 G~d~~sl~~~~ga~ge~agL~a~r~~~~~~G~~~r~~vlis~~aH~snp~sa~~~G~~vv~v~~d~~G~iD~~~L~~~i~ 635 (954)
T PRK05367 556 GYDAVSLQPNAGAQGEYAGLLAIRAYHESRGEGHRDVCLIPSSAHGTNPASAVMAGMKVVVVACDENGNIDLDDLRAKAE 635 (954)
T ss_pred CCCCEEECccHHHHHHHHHHHHHHHHhhccCCCCCCEEEEEchhhhhhHHHHHHCCCEEEEECCCCCCCcCHHHHHHHHh
Confidence 99988899999999999999999998776765456789999999999999999999999999998889999999999998
Q ss_pred hcCCCEEEEEEEcCCCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCccCCcEEEeCCcccccccCCCCCCc
Q 001989 726 ANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIGADVCHLNLHKTFCIPHGGGGPG 805 (985)
Q Consensus 726 ~~~~~t~~Vvv~~pn~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~g~Di~~~s~hK~l~~p~g~GGPg 805 (985)
++++++++|++++|++.|++..|+++|+++||++|+++|||+||+.++.++..|+++|+|++++++||||++|||+||||
T Consensus 636 ~~~~~la~V~it~pst~G~~e~~I~eI~~i~h~~G~~v~VDgA~~~al~~l~~pg~~GADi~~~s~HK~f~~P~G~GGPg 715 (954)
T PRK05367 636 EHADNLAAIMITYPSTHGVFEETIREICEIVHEHGGQVYLDGANMNAQVGLARPGDIGADVSHLNLHKTFCIPHGGGGPG 715 (954)
T ss_pred ccCCCeEEEEEEcCCCCeeecCCHHHHHHHHHHcCCEEEEECcChhhccCCCChhhcCCCEEEecCcccCCCCcCCCCCc
Confidence 54457999999999998988548999999999999999999999888888888999999999999999999999999999
Q ss_pred eEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHH
Q 001989 806 MGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKR 885 (985)
Q Consensus 806 ~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~ 885 (985)
+|++++++++.+++|++.++.+.+ ..+.+.++++++|+++.+.++|+|+..+|.+|+++..++++.+++|++++
T Consensus 716 ~G~l~vr~~l~p~lpg~~v~~~~~------~~~~g~v~ta~~g~al~~~~a~~yi~~~G~~Glr~~a~~~~~~A~Yl~~~ 789 (954)
T PRK05367 716 VGPIGVKAHLAPFLPGHPVQIAGG------ETGIGAVSAAPFGSASILPISWMYIRMMGAEGLRQATEVAILNANYIAKR 789 (954)
T ss_pred eEEEeecccccccCCCCccCcCCC------CCCcCcchhHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999886543221 12345666667888888899999999999999999999999999999999
Q ss_pred hhccCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCCCCCCCEEEEeccCCCCHHHHHHHHccC
Q 001989 886 LEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKSWTGIVMLSS 965 (985)
Q Consensus 886 L~~g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~~p~~~~lris~t~~~t~eeId~~~~~~ 965 (985)
|++++++.+.++.++++|+++++++.++...+++..+++++|.++||++++++||+++++||+||++++++|||+ |++
T Consensus 790 L~~~~~~~~~~~~~~~~~e~i~~~~~~~~~~g~~~~di~krL~d~G~~~~t~~~pv~~~l~i~ptE~~s~~elDr--~~~ 867 (954)
T PRK05367 790 LKDHYPVLYTGANGRVAHECILDLRPLKESTGITVDDIAKRLIDYGFHAPTMSFPVAGTLMVEPTESESKAELDR--FCD 867 (954)
T ss_pred HHhhcCccccCCCCCcccceEEEeecccccCCCCHHHHHHHHHHCCCeEeecCCccCCEEEEEeeecCCHHHHHH--HHH
Confidence 988888877765567899999998655444467889999999999999998889999999999999999999999 889
Q ss_pred ChhHHHHhhcc
Q 001989 966 PSEKKLHRLKM 976 (985)
Q Consensus 966 ~l~~~~~~~~~ 976 (985)
+++++..+++.
T Consensus 868 al~~i~~e~~~ 878 (954)
T PRK05367 868 AMIAIRAEIDE 878 (954)
T ss_pred HHHHHHHHHHH
Confidence 99888877654
|
|
| >COG0403 GcvP Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-107 Score=877.20 Aligned_cols=438 Identities=55% Similarity=0.876 Sum_probs=409.9
Q ss_pred CCCccccccCCCCCHHHHHHHHHHhCCCCHHHhhhhcCCCccccCCCCCCCCCCCCCHHHHHHHHHHHhcCCCccceecC
Q 001989 93 KPSDTFARRHNSATPEDQAKMSELVGLDNLDSLIDATVPKSIRIDSMKFSKFDEGLTESQMIEHMQKLASMNKVYKSFIG 172 (985)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~ml~~~g~~~~~~l~~~~ip~~~~~~~~~lp~~~~~~se~e~~~~~~~l~~~n~~~~~~lG 172 (985)
.+.|.|+.|||+|+++|+++||++||++|+||||+++||++|+++...++.+|+++||.|+++++++++++|+.+.+|+|
T Consensus 2 ~~~~~f~~rh~~P~~~d~~~ML~~iG~~Sld~L~~~~IP~~Ir~~~~~~~~~~~~~sE~e~l~~l~~ia~kN~~~~sfiG 81 (450)
T COG0403 2 EPLDAFMARHIGPSSADQQEMLAAIGVSSLDELFSQDIPPSIRKKLDTLLPLPKPLSEYEALAELKEIASKNKVFTSFIG 81 (450)
T ss_pred CccchhhhcCCCCChHHHHHHHHHcCCCCHHHHhhccCCHHHHhcccccCCCCCCCCHHHHHHHHHHHHhcCchhhhhcc
Confidence 45788999999999999999999999999999999889999942222221235889999999999999999999999999
Q ss_pred CCCCCCCCcHHHHHHHHhCCccccccCCChhhHhhhHHHHHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhc
Q 001989 173 MGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQK 252 (985)
Q Consensus 173 ~g~y~~~~p~~v~~~i~~~~~~~t~~~pyq~e~sqg~l~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~ 252 (985)
+|+|+|++|++|.|+|++||||||+|||||||||||+||++||||+++|+|||||++|+||||++|+++||+.||.|.++
T Consensus 82 ~GyY~~~~P~vI~rnile~pewyTaYTPYQpEISQGrLqaLfefQtlv~dLTGm~VANASm~DeaTAaAEAm~ma~r~~k 161 (450)
T COG0403 82 AGYYDTYTPPVILRNILENPEWYTAYTPYQPEISQGRLEALFEFQTLVADLTGLDVANASMLDEATAAAEAMLMAKRVTK 161 (450)
T ss_pred CcccCCcCcHHHHHHhhcCccccccCCCCchhhhhHHHHHHHHHHHHHHHHhCCCcccchhhhhHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred CCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCchhhhc----cCCCEeEEEEEcCCCCe-eeccHHHHHHHHHhCCc
Q 001989 253 GKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDLKDIDY----KSGDVCGVLVQYPGTEG-EVLDYGDFIKNAHANGV 327 (985)
Q Consensus 253 ~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~~~l~~----l~~~t~~V~v~~pn~~G-~v~di~~I~~~a~~~ga 327 (985)
+++++|+|++.+||+.+++++||++++|++++.++.++++. .+.++.+|+||+||++| .+.|+.+|.+.+|++|+
T Consensus 162 ~k~~~~~V~~~vhpqt~~Vl~Tra~~~g~~i~~~~~~d~~~l~~~~~~~~~gv~vQyP~~~G~~~~d~~~l~~~~h~~~a 241 (450)
T COG0403 162 KKRNKFLVPKDVHPQTLDVLRTRAEGLGIEIEVVDADDLDDLESADDGDVFGVLVQYPNTFGIVEEDLRALIEAAHSAGA 241 (450)
T ss_pred CcCceEEecCCCCHHHHHHHHhhcccCceEEEEeccchhhhhhhccccCeEEEEEecCCCCCccchhHHHHHHHHhhcCC
Confidence 66899999999999999999999999999999998766543 24589999999999999 66789999999999999
Q ss_pred EEEEEecCccccCCCCCCcccceEEEecCccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccc
Q 001989 328 KVVMATDLLALTILKPPGELGADIVVGSAQRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTR 407 (985)
Q Consensus 328 lliV~a~~~~lg~l~~~~~~GaDi~v~s~k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tr 407 (985)
+++|++|+++++++++||+|||||+||++|.||+||+|||||+|||+|+++++|+||||+||+|+|.+|+++|+|+||||
T Consensus 242 l~~v~aDplaL~LL~pPGe~GADIvvG~~QrfGvPmgfGGPhag~fA~~~~~~R~mPGRlVG~S~D~~G~~A~rLaLQTR 321 (450)
T COG0403 242 LVIVAADPLALGLLKPPGEFGADIVVGSAQRFGVPMGFGGPHAGYFAVKDEFKRQMPGRLVGVSVDAAGKRAFRLALQTR 321 (450)
T ss_pred EEEEEechhHhhccCCccccCCceEEecCcccCCCcCCCCcceeeeeEhHhHhhcCCCceeeeeecCCCCchhhhhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccCCCccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCC-CeEEcCCCCcceEEEecC-C-
Q 001989 408 EQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLG-TVEVQGLPFFDTVKVKCA-D- 484 (985)
Q Consensus 408 e~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g-~~~~~~~~~~~~~~~~~~-~- 484 (985)
|||||||||||||||||+|+|++|++|+.++|++|+++++++++++++||+++|++++ |++++.+.+|++|+++++ .
T Consensus 322 EQHIRReKATSNICTnQaLlA~~As~y~~~hGp~GLk~iA~r~~~~a~~la~~L~~~~~g~~~~~~~fFdt~~v~~~~~~ 401 (450)
T COG0403 322 EQHIRREKATSNICTNQALLALAASMYAVYHGPQGLKEIAERIHRLAAYLAAGLKEIGAGVELVFDHFFDTFTVRVPEEV 401 (450)
T ss_pred HHHHhhhccchhhhHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhcCCceEeccccceeeEEEecchhH
Confidence 9999999999999999999999999999999999999999999999999999999662 499987789999999998 4
Q ss_pred HHHHHHHHHHcCceeeeecCCeEEEEeccCCCHHHHHHHHHHHhCC
Q 001989 485 AHAIASAAYKIEMNLRVVDSNTVTASFDETTTLEDVDKLFIVFAGG 530 (985)
Q Consensus 485 ~~~v~~~L~~~GI~~~~~~~~~lris~t~~~t~edId~li~aL~~~ 530 (985)
...+.++....||+++.++++.+.+|+||.+|++|||.|+++|...
T Consensus 402 ~~~l~~~~~~~G~~L~~~~~~~~~ia~tEt~t~~~i~~l~~~~~~~ 447 (450)
T COG0403 402 AEALLAAAIAGGINLRRVDADTVLIALTETTTKEDIDALVAAFGGV 447 (450)
T ss_pred HHHHHHHHHhcCCceeeecCCceEEEeecccCHHHHHHHHHHHhhh
Confidence 7777888888899999988889999999999999999999999864
|
|
| >PF02347 GDC-P: Glycine cleavage system P-protein; InterPro: IPR020580 This family consists of glycine cleavage system P-proteins (1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-98 Score=843.23 Aligned_cols=425 Identities=44% Similarity=0.665 Sum_probs=327.1
Q ss_pred ccCCCCCHHHHHHHHHHhCCCCHHHhhhhcCCCcc-ccCCCCCCCCCCCCCHHHHHHHHHHHhcCCCccceecCCCCCCC
Q 001989 100 RRHNSATPEDQAKMSELVGLDNLDSLIDATVPKSI-RIDSMKFSKFDEGLTESQMIEHMQKLASMNKVYKSFIGMGYYNT 178 (985)
Q Consensus 100 ~~~~~~~~~~~~~ml~~~g~~~~~~l~~~~ip~~~-~~~~~~lp~~~~~~se~e~~~~~~~l~~~n~~~~~~lG~g~y~~ 178 (985)
+||||||++|+++||++||++|+||||+++||+++ ++++++|| +++||.|++||+++|+++|..+.+|+|+|+|+|
T Consensus 1 ~ryi~~t~~~~~~ML~~iG~~sieeL~~~~IP~~i~~~~~~~lp---~~~sE~e~~r~~~~la~kN~~~~~fiG~G~y~~ 77 (429)
T PF02347_consen 1 MRYIPPTDEDIQEMLDAIGVKSIEELFDSDIPEEIRLKKPLNLP---EPLSEYELLRHLERLASKNKSYTSFIGAGSYTH 77 (429)
T ss_dssp -------HHHHHHHHHHCT-SSTGGGG-TTS-GGG-SS-------------HHHHHHHHHHHHTTS--TTS---CTTT--
T ss_pred CCCCCcCHHHHHHHHHhcCCCCHHHHhhhhCCHhhcCCCCCCCC---CCCCHHHHHHHHHHHHhcCCCCCccccccccCc
Confidence 59999999999999999999999999966799999 88899997 679999999999999999999999999999999
Q ss_pred CCcHHHHHHHHhCCccccccCCChhhHhhhHHHHHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEE
Q 001989 179 HVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTF 258 (985)
Q Consensus 179 ~~p~~v~~~i~~~~~~~t~~~pyq~e~sqg~l~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~V 258 (985)
++|++|.+++++|+||||+|||||||+|||+||++||||++||+|||||.+|+|+||++||++||++|+.+..++++++|
T Consensus 78 ~~P~~i~~~i~~~~ef~TaYtPYQpEisQG~Lq~lfe~Qs~i~eLTGmdvaNaSlyd~atA~aEa~~ma~r~~~~~~~~v 157 (429)
T PF02347_consen 78 YVPAVIDRNILSRPEFYTAYTPYQPEISQGRLQALFEYQSMICELTGMDVANASLYDGATAAAEAMLMAVRATKRKRNKV 157 (429)
T ss_dssp ---HHHHH-HHCCHHCCCS-STTSGGGBHHHHHHHHHHHHHHHHHHTSSEE-SEBSSCCHHHHHHHHHHHHHHTT---EE
T ss_pred eeChhhcCccccChhhhccCCCCCcHHHHHHHHHHHHHHHHHHHhhCCCccCCCCCChhHHHHHHHHHHHHhcccCCcEE
Confidence 99999997799999999999999999999999999999999999999999999999999999999999988875566799
Q ss_pred EEcCCCChhHHHHHHHhhcCCCeEEEEeCchhhhc-cCCCEeEEEEEcCCCCeeeccHHHHHHHHHhCCcEEEEEecCcc
Q 001989 259 IIASNCHPQTIDICITRADGFDIKVVVSDLKDIDY-KSGDVCGVLVQYPGTEGEVLDYGDFIKNAHANGVKVVMATDLLA 337 (985)
Q Consensus 259 lv~~~~H~s~~~~~~~~a~~~gi~v~~v~~~~l~~-l~~~t~~V~v~~pn~~G~v~di~~I~~~a~~~galliV~a~~~~ 337 (985)
++++..||+++.++++|++..|++++.++.++-.. .++++++|+||+||++|.++|+++|++++|++|+++++++|+++
T Consensus 158 lv~~~~hP~~~~v~~t~a~~~g~~iv~~~~~~~~~~d~~~~a~v~vq~Pn~~G~~ed~~~i~~~~h~~gal~~~~ad~~a 237 (429)
T PF02347_consen 158 LVPESLHPQTRAVLRTYAAPLGIEIVEVPLDEDGTTDDDDTAAVMVQNPNTFGVFEDIKEIADIAHAAGALVIVGADPNA 237 (429)
T ss_dssp EEETTS-CHHHHHHHHHCCHCCEEEEEE-BBTTCSB-STTEEEEEEESS-TTSB--THHHHHHHHHHTT-EEEECGGCCG
T ss_pred EEcCCcChhhHHHHHHhhhhCCeEEEEecccccCCccccCeEEEEeecCCCCceEeeHHHHHHHHHHcCCEEEEecCHHH
Confidence 99999999999999999999999999998764322 25799999999999999999999999999999999999999999
Q ss_pred ccCCCCCCcccceEEEecCccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccC
Q 001989 338 LTILKPPGELGADIVVGSAQRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKAT 417 (985)
Q Consensus 338 lg~l~~~~~~GaDi~v~s~k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~at 417 (985)
++++++|++|||||+|+++|+||+||++||||+|||+|+++++|+||||+||.|+|.+|+++|+|+||||||||||||||
T Consensus 238 L~~l~~Pge~GADI~vg~~Q~fg~p~~~GGP~~G~~a~~~~l~r~lPGRiVG~t~D~~G~~~~~ltLqtREQHIrReKAt 317 (429)
T PF02347_consen 238 LGGLKSPGEYGADIVVGEHQTFGIPMGFGGPGAGFFAVREDLVRQLPGRIVGQTKDADGKRAFVLTLQTREQHIRREKAT 317 (429)
T ss_dssp CCTC--GGGGT-SEEEECCTTTT---CCC-S--EEEEE-GGGGGGS-S-EEEEEEBCCCSCCEEEE-GGGTCHHHGCCST
T ss_pred HhCcCChhhcCccEEeeCCCCCcccCCCCCCCeeeEEEhhhhhhhCCCceecccccccccceeeeccccccccccccchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCCCcceEEEecCC--HHHHHHHHHHc
Q 001989 418 SNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDTVKVKCAD--AHAIASAAYKI 495 (985)
Q Consensus 418 sni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~--~~~v~~~L~~~ 495 (985)
|||||||++++++|++|+.++|++||++++++++.+|+|++++|+++.++.+.+..++++|....+. ..++.+++...
T Consensus 318 SNIctnqaL~A~~a~~Yl~~~G~~GL~~iA~~~~~~A~yl~~~L~~~~~~~~~~~~f~e~v~~~~~~~~~~~l~~~~~~~ 397 (429)
T PF02347_consen 318 SNICTNQALLALAAAIYLAYLGPEGLREIAERIHLNAHYLAERLKKIYGLPFDNPFFFEFVVVFSKDKEVEELLKRGIEG 397 (429)
T ss_dssp T---SS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTBECSSSSSBSSEEEEESS-HHHHHHHHTT---
T ss_pred hhhhhhHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCCceeeeeecCCcHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999742443344566666666554 33455555555
Q ss_pred CceeeeecCCeEEEEeccCCCHHHHHHHHHHH
Q 001989 496 EMNLRVVDSNTVTASFDETTTLEDVDKLFIVF 527 (985)
Q Consensus 496 GI~~~~~~~~~lris~t~~~t~edId~li~aL 527 (985)
|+.++....+++++|+||.+|+||||+|+++|
T Consensus 398 gl~~~~~~~~~~li~~TE~~t~edid~lv~~f 429 (429)
T PF02347_consen 398 GLNLRYPDDGALLICVTETRTKEDIDRLVEAF 429 (429)
T ss_dssp -EEEGGG-SSEEEEE--TT--HHHHHHHHH--
T ss_pred CCCccccCCCeEEEEccCCCCHHHHHHHHhcC
Confidence 65565555679999999999999999999876
|
4.4.2 from EC) from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex (2.1.2.10 from EC (GDC) also annotated as glycine cleavage system or glycine synthase. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor, carbon dioxide is released and the remaining methylamin moiety is then transferred to the lipoamide cofactor of the H protein. GDC consists of four proteins P, H, L and T []. The reaction catalysed by this protein is: Glycine + lipoylprotein = S-aminomethyldihydrolipoylprotein + CO2 ; GO: 0004375 glycine dehydrogenase (decarboxylating) activity, 0055114 oxidation-reduction process; PDB: 1WYV_A 1WYT_C 1WYU_A. |
| >COG1003 GcvP Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-79 Score=659.05 Aligned_cols=414 Identities=59% Similarity=1.000 Sum_probs=379.8
Q ss_pred CCCCCccccCC-----CCHHHHHHHHHHHhccccCcccccccccccccCCCccccccccccccccccCCCCchhhhhhHH
Q 001989 557 PYLTHPVFNKY-----HTEHELLRYIHLLQSKELSLCHSMIPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQ 631 (985)
Q Consensus 557 ~~~~~p~~~~~-----~se~e~~~~l~~l~~~~~~~~~~~~~lG~~t~~~~~~~~~~~~~~~~f~~~~p~~p~e~~~G~~ 631 (985)
.++++|+|+.. +||.|++||+.+|+++|+.++.+|++|||||||+|+..++.++.|++|.+.|||+|.++.||++
T Consensus 29 ~~L~~~~~r~~~~~Pe~SE~e~~Rh~~rLs~kn~avd~~m~PLGSCTMK~Np~~e~~~~~~p~f~~iHP~~pe~~vqG~l 108 (496)
T COG1003 29 EYLPHPVFRRYPPLPEHSETEMVRHYTRLSQKDLAVDRGMIPLGSCTMKLNPKAEMKPATWPEFANIHPFQPEEQVQGYL 108 (496)
T ss_pred hhcCcHHhhcCCCCccccHHHHHHHHHHHHhcccccccCccCCcccccccCchhhcccccccchhhcCCCCChHHHHHHH
Confidence 55666666666 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcCCC
Q 001989 632 EMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDA 711 (985)
Q Consensus 632 ~~~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~d~ 711 (985)
+++.++++||++++|+|.+++++++|++|+++++++||+|++++|...|++||||+++||+||++|.+.|++|+.|++++
T Consensus 109 ~li~~Lq~~L~~ITG~DavsLQP~AGAqGE~aGll~Ir~YHe~rG~~~R~~~LIP~SAHGTNPASAam~G~~VV~V~~~~ 188 (496)
T COG1003 109 ELIYELQEWLKEITGMDAVSLQPNAGAQGEYAGLLAIRAYHESRGEGHRNICLIPDSAHGTNPASAAMAGFKVVVVKCDE 188 (496)
T ss_pred HHHHHHHHHHHHhcCCceeeccCCCCcchhhHHHHHHHHHHHHcCCCcCcEEEeeccccCCChhhHhhcCceEEEEecCC
Confidence 99999999999999999999999999999999999999999999977899999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCCCEEEEEEEcCCCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCccCCcEEEeCC
Q 001989 712 KGNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIGADVCHLNL 791 (985)
Q Consensus 712 ~g~iD~e~L~~~i~~~~~~t~~Vvv~~pn~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~g~Di~~~s~ 791 (985)
+|.+|+|+|++++. ++++++|+||||++|+|+.+|.||++++|++|++|++|||+.+++.|+.+||++|+||+++++
T Consensus 189 ~G~VDlddLk~k~~---~~~AalMiTnPsT~GvFE~~I~ei~~ivH~~Gg~vY~DGANlNA~vG~~rPGd~G~DV~HlNL 265 (496)
T COG1003 189 NGNVDLDDLRAKAE---DNLAALMITNPSTLGVFEEDIREICEIVHEAGGQVYYDGANLNAIVGLARPGDMGFDVVHLNL 265 (496)
T ss_pred CCCccHHHHHHHhc---cceeEEEeccCcccccchhhHHHHHHHHHHcCCEEEecCcchhhhhccccccccccceEEeec
Confidence 99999999999998 899999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCCCCCceEEEEEcccccCcCCCCccc-cCCCC-CCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHHHH
Q 001989 792 HKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVV-STGGI-PAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLT 869 (985)
Q Consensus 792 hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g-~~~~~-~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl~ 869 (985)
||||++|||+||||+|.|++++++.+++|+...- ...++ ......+. ....++++|+++.+..+|+||..||.+|++
T Consensus 266 HKTF~iPHGGGGPG~GPvgVk~~L~pfLP~p~~~~~~~~y~~~~~~~~s-~g~~~a~~Gs~~il~~a~~YI~~mG~~GL~ 344 (496)
T COG1003 266 HKTFCIPHGGGGPGAGPVGVKAHLAPFLPGPVVYHDVGEYRLDYDGKKS-IGVSAAPYGSASILPIAWAYIRMMGADGLK 344 (496)
T ss_pred ccccccCCCCCCCCCCceehHhhccccCCCCcccCCCccccccCCCCcc-ceeeccccCcchHHHHHHHHHHHHhHHHHH
Confidence 9999999999999999999999999999974210 00110 00111122 234457899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhccCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCCCC--CCCEEEE
Q 001989 870 EASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWP--VPGTLMI 947 (985)
Q Consensus 870 ~~~~~~~~~a~~l~~~L~~g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~~p--~~~~lri 947 (985)
+..+....|++|++++|+..++++|.+.. .+.|+|+++.+++++..|++..||+|+|.++|+++++++|| |.++|||
T Consensus 345 ~ase~AvLNANYia~rL~~~y~~~y~~~~-~~~HE~ild~r~l~~~~Gv~~~DvAKrLlD~GfHaPT~~FPliV~~tLMI 423 (496)
T COG1003 345 QASEVAVLNANYIARRLKGYYPVPYTGEN-RVAHECILDARPLKKETGVRALDVAKRLLDYGFHAPTMYFPLIVAGTLMI 423 (496)
T ss_pred HHHHHHHHhHHHHHHHhhhcCccccCCCC-cceeEEEeechHhHhhcCCcHHHHHHHHHhcCCCCCcccCccccccceee
Confidence 99999999999999999988898886643 78999999998777778999999999999999999999999 8999999
Q ss_pred eccCCCCHHHHHHHHccCChhHHHHhhccC
Q 001989 948 EPTESESKSWTGIVMLSSPSEKKLHRLKMG 977 (985)
Q Consensus 948 s~t~~~t~eeId~~~~~~~l~~~~~~~~~~ 977 (985)
.|||+.+++|+|+ ||+++.++.++.++.
T Consensus 424 EPTEsEsk~eLDr--f~dami~I~~Ea~~~ 451 (496)
T COG1003 424 EPTESESKEELDR--FIDAMIAIREEADAV 451 (496)
T ss_pred cCCCCCCHHHHHH--HHHHHHHHHHHHHhc
Confidence 9999999999999 999999999887663
|
|
| >PF02347 GDC-P: Glycine cleavage system P-protein; InterPro: IPR020580 This family consists of glycine cleavage system P-proteins (1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-57 Score=511.77 Aligned_cols=399 Identities=34% Similarity=0.508 Sum_probs=286.3
Q ss_pred CCCHHHHHHHHHHHhCCCCCCCCHHhhhhhhhccCCCCccCCCCCCCCccccCCCCHHHHHHHHHHHhccccCccccccc
Q 001989 514 TTTLEDVDKLFIVFAGGKSVPFTAASLAEEVETAIPSGLTRESPYLTHPVFNKYHTEHELLRYIHLLQSKELSLCHSMIP 593 (985)
Q Consensus 514 ~~t~edId~li~aL~~~~~~~~~~~~l~~~~~~~ip~~~~~~~~~~~~p~~~~~~se~e~~~~l~~l~~~~~~~~~~~~~ 593 (985)
-+|++|++.+++.++.. |+++|+. ++||+++|+++++ .+| +++||.|++|++++|+++|.. ..+.++
T Consensus 5 ~~t~~~~~~ML~~iG~~-----sieeL~~---~~IP~~i~~~~~~-~lp---~~~sE~e~~r~~~~la~kN~~-~~~fiG 71 (429)
T PF02347_consen 5 PPTDEDIQEMLDAIGVK-----SIEELFD---SDIPEEIRLKKPL-NLP---EPLSEYELLRHLERLASKNKS-YTSFIG 71 (429)
T ss_dssp ---HHHHHHHHHHCT-S-----STGGGG----TTS-GGG-SS--------------HHHHHHHHHHHHTTS---TTS---
T ss_pred CcCHHHHHHHHHhcCCC-----CHHHHhh---hhCCHhhcCCCCC-CCC---CCCCHHHHHHHHHHHHhcCCC-CCcccc
Confidence 36899999999999998 8999983 4799999999885 677 679999999999999999988 567788
Q ss_pred ccccccCCCccccccccccccccc-cCCCCchhhhhhHHHHHHHHHHHHHHHhCCCcc--ceecCcHHHHHHHHHHHHHH
Q 001989 594 LGSCTMKLNATTEMMPVTWPSFAN-IHPFAPADQAQGYQEMFNNLGEWLCTITGFDSF--SLQPNAGAAGEYAGLMVIRA 670 (985)
Q Consensus 594 lG~~t~~~~~~~~~~~~~~~~f~~-~~p~~p~e~~~G~~~~~~e~~~~la~l~G~~~~--~~~~~sGa~a~~a~l~air~ 670 (985)
+|+|++++|+......+++++|++ |||||| |++||.+|+++|+|+++|+++|+|.+ ++++++++.|+ +++|++|.
T Consensus 72 ~G~y~~~~P~~i~~~i~~~~ef~TaYtPYQp-EisQG~Lq~lfe~Qs~i~eLTGmdvaNaSlyd~atA~aE-a~~ma~r~ 149 (429)
T PF02347_consen 72 AGSYTHYVPAVIDRNILSRPEFYTAYTPYQP-EISQGRLQALFEYQSMICELTGMDVANASLYDGATAAAE-AMLMAVRA 149 (429)
T ss_dssp CTTT-----HHHHH-HHCCHHCCCS-STTSG-GGBHHHHHHHHHHHHHHHHHHTSSEE-SEBSSCCHHHHH-HHHHHHHH
T ss_pred ccccCceeChhhcCccccChhhhccCCCCCc-HHHHHHHHHHHHHHHHHHHhhCCCccCCCCCChhHHHHH-HHHHHHHh
Confidence 899999999998887789999987 999999 99999999999999999999999985 57788888887 88888875
Q ss_pred HHHhcCCCCCCEEEEcCCCCcccHHH----HHHCCcEEEEEcCCCCCCCCHHHHHHHHHhcCCCEEEEEEEcCCCccccc
Q 001989 671 YHKARGDHHRNVCIIPVSAHGTNPAT----AAMCGMKIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPSTHGVYE 746 (985)
Q Consensus 671 ~~~~~g~~~~~~IIv~~~~Hg~~~~~----a~~~G~~vv~v~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~pn~~G~i~ 746 (985)
. + .++++|+++...|+.+... +...|++++.+|.++++..| + +++++|++++||++|+++
T Consensus 150 ~---~--~~~~~vlv~~~~hP~~~~v~~t~a~~~g~~iv~~~~~~~~~~d--------~---~~~a~v~vq~Pn~~G~~e 213 (429)
T PF02347_consen 150 T---K--RKRNKVLVPESLHPQTRAVLRTYAAPLGIEIVEVPLDEDGTTD--------D---DDTAAVMVQNPNTFGVFE 213 (429)
T ss_dssp H---T--T---EEEEETTS-CHHHHHHHHHCCHCCEEEEEE-BBTTCSB---------S---TTEEEEEEESS-TTSB--
T ss_pred c---c--cCCcEEEEcCCcChhhHHHHHHhhhhCCeEEEEecccccCCcc--------c---cCeEEEEeecCCCCceEe
Confidence 3 1 2356899999999888774 45689999999998877777 4 899999999999999999
Q ss_pred cCHHHHHHHHHHcCCEEEEEccccccccCCCCCCccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCcccc
Q 001989 747 EGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVS 826 (985)
Q Consensus 747 ~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~ 826 (985)
|+++|++++|++|+++++ ++++++++++.+|+++|+||++++ ||+|++|+++|||++|++++++++.+++||+++|.
T Consensus 214 -d~~~i~~~~h~~gal~~~-~ad~~aL~~l~~Pge~GADI~vg~-~Q~fg~p~~~GGP~~G~~a~~~~l~r~lPGRiVG~ 290 (429)
T PF02347_consen 214 -DIKEIADIAHAAGALVIV-GADPNALGGLKSPGEYGADIVVGE-HQTFGIPMGFGGPGAGFFAVREDLVRQLPGRIVGQ 290 (429)
T ss_dssp -THHHHHHHHHHTT-EEEE-CGGCCGCCTC--GGGGT-SEEEEC-CTTTT---CCC-S--EEEEE-GGGGGGS-S-EEEE
T ss_pred -eHHHHHHHHHHcCCEEEE-ecCHHHHhCcCChhhcCccEEeeC-CCCCcccCCCCCCCeeeEEEhhhhhhhCCCceecc
Confidence 799999999999999999 999999999999999999999766 89999999999999999999999999999999987
Q ss_pred CCCC-C------------CC-CCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhccCCe
Q 001989 827 TGGI-P------------AP-EKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPI 892 (985)
Q Consensus 827 ~~~~-~------------~~-~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~g~~l 892 (985)
+.|. + +| +|+++|+|||++ +++.+.+|++|+.++|++|++++++++..+++|++++|++.+.+
T Consensus 291 t~D~~G~~~~~ltLqtREQHIrReKAtSNIctn---qaL~A~~a~~Yl~~~G~~GL~~iA~~~~~~A~yl~~~L~~~~~~ 367 (429)
T PF02347_consen 291 TKDADGKRAFVLTLQTREQHIRREKATSNICTN---QALLALAAAIYLAYLGPEGLREIAERIHLNAHYLAERLKKIYGL 367 (429)
T ss_dssp EEBCCCSCCEEEE-GGGTCHHHGCCSTT---SS----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTBE
T ss_pred cccccccceeeeccccccccccccchhhhhhhh---HHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 6543 2 12 478999999986 77777889999999999999999999999999999999875444
Q ss_pred eecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCC-CCCCCCCEEEEeccCCCCHHHHHHH
Q 001989 893 LFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPT-MSWPVPGTLMIEPTESESKSWTGIV 961 (985)
Q Consensus 893 ~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~-~~~p~~~~lris~t~~~t~eeId~~ 961 (985)
.+.+ .+++++++... + . ..+. .|.++++..+. ..++..+.+.||+||.+|+||||++
T Consensus 368 ~~~~---~~f~e~v~~~~------~-~-~~~~-~l~~~~~~~gl~~~~~~~~~~li~~TE~~t~edid~l 425 (429)
T PF02347_consen 368 PFDN---PFFFEFVVVFS------K-D-KEVE-ELLKRGIEGGLNLRYPDDGALLICVTETRTKEDIDRL 425 (429)
T ss_dssp CSSS---SSBSSEEEEES------S---HHHH-HHHHTT----EEEGGG-SSEEEEE--TT--HHHHHHH
T ss_pred ccCC---CCceeeeeecC------C-c-HHHH-HHHHHHHhcCCCccccCCCeEEEEccCCCCHHHHHHH
Confidence 4432 35556666654 1 2 3333 36677666541 2234467999999999999999993
|
4.4.2 from EC) from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex (2.1.2.10 from EC (GDC) also annotated as glycine cleavage system or glycine synthase. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor, carbon dioxide is released and the remaining methylamin moiety is then transferred to the lipoamide cofactor of the H protein. GDC consists of four proteins P, H, L and T []. The reaction catalysed by this protein is: Glycine + lipoylprotein = S-aminomethyldihydrolipoylprotein + CO2 ; GO: 0004375 glycine dehydrogenase (decarboxylating) activity, 0055114 oxidation-reduction process; PDB: 1WYV_A 1WYT_C 1WYU_A. |
| >PRK00451 glycine dehydrogenase subunit 1; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-55 Score=519.23 Aligned_cols=424 Identities=38% Similarity=0.622 Sum_probs=377.1
Q ss_pred cccCCCCCHHHHHHHHHHhCCCCHHHhhhhcCCCcc-ccCCCCCCCCCCCCCHHHHHHHHHHHhcCCCc---cceecCCC
Q 001989 99 ARRHNSATPEDQAKMSELVGLDNLDSLIDATVPKSI-RIDSMKFSKFDEGLTESQMIEHMQKLASMNKV---YKSFIGMG 174 (985)
Q Consensus 99 ~~~~~~~~~~~~~~ml~~~g~~~~~~l~~~~ip~~~-~~~~~~lp~~~~~~se~e~~~~~~~l~~~n~~---~~~~lG~g 174 (985)
.++|||++++|+++||+++|++|+||||+ +||+++ ++.+++|| +++||.|+++++.+++++|.. ..+++|.|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~p~~~~~~~~~~lp---~~~~~~~v~~~~~~~~~~~~~~~~~~~~lg~g 76 (447)
T PRK00451 1 GMPYIPHTEEDIREMLDAIGVKSIDELFA-DIPEELRLKRPLDLP---PGLSEMELLRHLRELAAKNKTAEEYPSFLGAG 76 (447)
T ss_pred CCCCCCCCHHHHHHHHHHhCCCCHHHHHH-hCCHHHHhCCCCCCC---CCCCHHHHHHHHHHHHhcCCCcCcCcccCccc
Confidence 37999999999999999999999999995 599999 77778887 567999999999999987754 56799999
Q ss_pred CCCCCCcHHHHHHHHhCCccccccCCChhhHhhhHHHHHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCC
Q 001989 175 YYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGK 254 (985)
Q Consensus 175 ~y~~~~p~~v~~~i~~~~~~~t~~~pyq~e~sqg~l~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~ 254 (985)
++++.+|..+. .++.+.+|+++|+||+++.++|.++++.|+++++++++|++.+++++++|+|++++++++++... +
T Consensus 77 ~~~~~~p~~~~-~~~~~~~~~~~y~~~~~~~~~g~~~~~~e~~~~la~l~g~~~~~v~~~~g~t~~~~~~~~a~~~~--~ 153 (447)
T PRK00451 77 AYDHYIPAVVD-HIISRSEFYTAYTPYQPEISQGTLQAIFEYQTMICELTGMDVANASMYDGATALAEAALMAVRIT--K 153 (447)
T ss_pred ccCCcCcHHHH-HHHhchhHHHhcCCCCCccchHHHHHHHHHHHHHHHHhCCCcceEEecCcHHHHHHHHHHHHHhc--C
Confidence 99999999985 77788899999999999999999999999999999999999999999999999999998887544 7
Q ss_pred CCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCch-------hhhc-cCCCEeEEEEEcCCCCeeeccHHHHHHHHHhCC
Q 001989 255 KKTFIIASNCHPQTIDICITRADGFDIKVVVSDLK-------DIDY-KSGDVCGVLVQYPGTEGEVLDYGDFIKNAHANG 326 (985)
Q Consensus 255 g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~~-------~l~~-l~~~t~~V~v~~pn~~G~v~di~~I~~~a~~~g 326 (985)
|++|++++..|+++..+++.+++..|++++.++.+ ++++ ++++|++|++++||++|.+.|+++|+++||++|
T Consensus 154 g~~Vlv~~~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~~d~~~l~~~i~~~t~~v~l~~pn~tG~v~~l~~I~~~a~~~~ 233 (447)
T PRK00451 154 RKKVLVSGAVHPEYREVLKTYLKGQGIEVVEVPYEDGVTDLEALEAAVDDDTAAVVVQYPNFFGVIEDLEEIAEIAHAGG 233 (447)
T ss_pred CCEEEEeCccCHHHHHHHHHHHHhCCcEEEEecCCCCCCCHHHHHHhcCCCeEEEEEECCCCCCeeCCHHHHHHHHHHCC
Confidence 89999999999999999988777789999988664 3555 788999999999999999999999999999999
Q ss_pred cEEEEEecCccccCCCCCCcccceEEEecCccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeeccc
Q 001989 327 VKVVMATDLLALTILKPPGELGADIVVGSAQRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQT 406 (985)
Q Consensus 327 alliV~a~~~~lg~l~~~~~~GaDi~v~s~k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~t 406 (985)
++++|+.|..++|.+..++++|+|++++++|+|+.|+.+|||++||+++++++++.+|++++|++.+..++.+|.+.++.
T Consensus 234 ~~~iv~~d~~~~g~~~~~~~~~~D~~~~s~~k~~~~~~~~Gpg~G~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 313 (447)
T PRK00451 234 ALFIVGVDPVSLGLLKPPGEYGADIVVGEGQPLGIPLSFGGPYLGFFATRKKLVRQMPGRLVGETVDADGKRGFVLTLQA 313 (447)
T ss_pred CEEEEEcChHHhccCCCcccCCCCEEEECCCcCCCCCCCCCCCchHHHhhHHHHhhCCCCEeeeecccCCCeeeEeeccc
Confidence 99998666778888877899999999999999999999999999999999999999999999998766677788888888
Q ss_pred ccccccccccCCCccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCCCcceEEEecCC-H
Q 001989 407 REQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDTVKVKCAD-A 485 (985)
Q Consensus 407 re~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~-~ 485 (985)
+++++||+++|+|+|++.++.++.++.++.+++++|++++.+++.+++++++++|+++++++++..+++..+.++++. .
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~aaa~~l~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~v~~~~~~ 393 (447)
T PRK00451 314 REQHIRREKATSNICTNQALNALAAAIYMSLLGPEGLRELAEQNHQKAHYLAERLAEIGGVELFDGPFFNEFVVRLPKPA 393 (447)
T ss_pred cccccccccccccccccHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHhhcCCEEecCCCeEEEEEEecCCCH
Confidence 999999999999999998888888887888899999999999999999999999999965988755556666666543 7
Q ss_pred HHHHHHHHHcCceee----eec---CCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 486 HAIASAAYKIEMNLR----VVD---SNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 486 ~~v~~~L~~~GI~~~----~~~---~~~lris~t~~~t~edId~li~aL~~ 529 (985)
.++.++|.++||... ... .+.+|+|+++++|++|||+|+++|.+
T Consensus 394 ~~~~~~L~~~gi~~~~~~~~~~~~~~~~~rvs~~~~~t~e~i~~l~~~L~~ 444 (447)
T PRK00451 394 EEVNEALLEKGILGGYDLGRYYPELGNHLLVCVTEKRTKEDIDALVAALGE 444 (447)
T ss_pred HHHHHHHHhcCCCCCcccccccCCcCCEEEEecCCCCCHHHHHHHHHHHHH
Confidence 899999999988642 111 36899999999999999999999963
|
|
| >TIGR00461 gcvP glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-55 Score=527.03 Aligned_cols=403 Identities=19% Similarity=0.250 Sum_probs=342.6
Q ss_pred CCHHHHHHHHHHhC-CC--CHH-----HhhhhcCCCcc-ccCCCCCC-CCCCCCCHHHHHHHHHHHhcCCCcc-ceecCC
Q 001989 105 ATPEDQAKMSELVG-LD--NLD-----SLIDATVPKSI-RIDSMKFS-KFDEGLTESQMIEHMQKLASMNKVY-KSFIGM 173 (985)
Q Consensus 105 ~~~~~~~~ml~~~g-~~--~~~-----~l~~~~ip~~~-~~~~~~lp-~~~~~~se~e~~~~~~~l~~~n~~~-~~~lG~ 173 (985)
+|++|++..++.++ .+ .++ +-....||+.+ |+.++.+| .|..-.||.|++|||++|++||... .+|+|+
T Consensus 413 ~t~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~r~~~~~~~~~f~~~~sE~e~~r~~~~L~~kn~~~~~~fi~l 492 (939)
T TIGR00461 413 TTKADVENLLKVFDGEDNHGLSSQFLSEDVSNSFPREFQRTDEILRNEVFNMYHSETEMLRYLHRLESKDLALNNSMIPL 492 (939)
T ss_pred CCHHHHHHHHHHhcCCCccccchhhhhhhhcccCchhhhccCcccCCcccccCCCHHHHHHHHHHHHhcCCCccccCCCC
Confidence 68999999999995 32 111 11222499999 88877776 1122239999999999999999874 589999
Q ss_pred CCCCCCCcHHHHHHHHhCCccccccCCChhh-HhhhHHHHHHHHHHHHHHhcCCCCcceeeccchHHHHHH-HHHHhhhh
Q 001989 174 GYYNTHVPPVILRNIMENPAWYTQYTPYQAE-IAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEA-MAMCNNIQ 251 (985)
Q Consensus 174 g~y~~~~p~~v~~~i~~~~~~~t~~~pyq~e-~sqg~l~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea-~~~a~~~~ 251 (985)
|.|.|.+|+.+..-..++++|+| ||||||| .+||++|+++|+|+++|+++||| ++|+|+++++.+|+ .+|+.|..
T Consensus 493 Gsctmk~na~v~~l~~s~~ef~t-~hPyqPe~~sqG~lq~i~elq~~l~eltGmd--~~Sl~p~aGA~gE~agL~aiR~y 569 (939)
T TIGR00461 493 GSCTMKLNATAEMMPITWPEFSN-IHPFQPSNQVEGYQELIAQLEKWLCSITGFD--AISLQPNSGAQGEYAGLRVIRSY 569 (939)
T ss_pred ccCCCccCHHHHHHHhcchhhcC-cCCCCchHHhHHHHHHHHHHHHHHHHHHCCC--CcccCCchHHHHHHHHHHHHHHH
Confidence 99999999999854489999999 9999999 99999999999999999999999 59999999999997 66776641
Q ss_pred ---c--CCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc--------hhhhc-cC---CCEeEEEEEcCCCCeeecc
Q 001989 252 ---K--GKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL--------KDIDY-KS---GDVCGVLVQYPGTEGEVLD 314 (985)
Q Consensus 252 ---~--~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~--------~~l~~-l~---~~t~~V~v~~pn~~G~v~d 314 (985)
+ +++++|++|.+.|.++-..++ ..|+++++++. ++|++ ++ ++|++|++|+||++|.++|
T Consensus 570 ~~~rge~~R~~vlip~saHgtnPasa~----~~G~~Vv~V~~d~~G~iDle~L~~~i~~~~~~taaV~iT~pst~G~~e~ 645 (939)
T TIGR00461 570 HESRGENHRNICLIPVSAHGTNPASAA----MAGMQVVPVNCDQDGNIDLVDLKNKAEQHGDELAAVMVTYPSTHGVFEP 645 (939)
T ss_pred HHhcCCCCCCEEEEEccccCcCHHHHH----HCCCEEEEeccCCCCCcCHHHHHHHHhhcCCceEEEEEEeCCcCceecc
Confidence 1 256789999999966544432 45888888764 45666 65 5899999999999999987
Q ss_pred -HHHHHHHHHhCCcEEEE-EecCccccCCCCCCcccceEEEecC-ccccccCCCCCCcEEEEEEchhhHhcCCCceeeee
Q 001989 315 -YGDFIKNAHANGVKVVM-ATDLLALTILKPPGELGADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVS 391 (985)
Q Consensus 315 -i~~I~~~a~~~galliV-~a~~~~lg~l~~~~~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t 391 (985)
|++|+++||++|++++| ++|+.+++.+.+|+++||||++++. |+|++|+++||||+|++++++.+.++||++.+|.+
T Consensus 646 ~I~eI~~iah~~G~~v~VDgAq~~al~~l~~Pg~~GaDi~~~s~HKtf~~P~G~GGPg~G~i~vr~~L~~~lPg~~v~~t 725 (939)
T TIGR00461 646 TIQHACDIVHSFGGQVYLDGANMNAQVGLTSPGDLGADVCHLNLHKTFCIPHGGGGPGMGPIGVKSHLIPFLPKHDVVSM 725 (939)
T ss_pred cHHHHHHHHHHcCCEEEEEecChhhCCCCCCccccCCCEEEecCCccCCCCCCCCCCCeEEEEEhhhchhhcCCCccccc
Confidence 99999999999999999 7888888888999999999999998 88999999999999999999999999999998865
Q ss_pred ecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcC
Q 001989 392 IDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQG 471 (985)
Q Consensus 392 ~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~ 471 (985)
.|.+| |+|||| ++||+|++++++++.+.+|+.++|++|++++.+....+|+|++++|++ + ++++.
T Consensus 726 ~d~~g----------req~Ig---a~s~~~~g~a~~~l~a~~yi~~lG~~GL~~~a~~ailnAnYl~~rL~~-~-~~~l~ 790 (939)
T TIGR00461 726 ITGIG----------GSKSIG---SVSAAPYGSASILPISWMYIKMMGNEGLPKASVVAILNANYMATRLKD-H-YPILF 790 (939)
T ss_pred ccCCC----------Cccccc---cccccccCcHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHhhc-c-Ccccc
Confidence 44322 678887 789999999999999999999999999999999999999999999988 4 77763
Q ss_pred C----CCcceEEEecC-------C-HHHHHHHHHHcCceeeee---cCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 472 L----PFFDTVKVKCA-------D-AHAIASAAYKIEMNLRVV---DSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 472 ~----~~~~~~~~~~~-------~-~~~v~~~L~~~GI~~~~~---~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
+ +++++|+++.+ . +.+|+++|.++||..... ..+.+++++||.+|++|||+|+++|..
T Consensus 791 ~~~~~~~~hEfv~~~~~~~~~~g~~~~dIakrL~d~G~hapt~~~pv~g~lmiepTE~eskeelD~f~~al~~ 863 (939)
T TIGR00461 791 VGTLKHVAHECILDLRPLKAKTGIEAIDVAKRLQDYGFHAPTLSFPVPGTLMVEPTESESLEELDRFCDAMIA 863 (939)
T ss_pred cCCCCceeEEEEEeccchhhhcCCCHHHHHHHHHhCCeeccccCCccCCeEEEEeeccCCHHHHHHHHHHHHH
Confidence 2 57899999876 2 899999999999976543 247999999999999999999999974
|
This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment. |
| >PRK04366 glycine dehydrogenase subunit 2; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-53 Score=496.51 Aligned_cols=379 Identities=20% Similarity=0.299 Sum_probs=321.5
Q ss_pred hhcCCCcc-ccCCCCCCCCCCCCCHHHHHHHHHHHhcCCCc-cceecCCCCCCCCCcHHHHHHHHhCCccccccCCChhh
Q 001989 127 DATVPKSI-RIDSMKFSKFDEGLTESQMIEHMQKLASMNKV-YKSFIGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAE 204 (985)
Q Consensus 127 ~~~ip~~~-~~~~~~lp~~~~~~se~e~~~~~~~l~~~n~~-~~~~lG~g~y~~~~p~~v~~~i~~~~~~~t~~~pyq~e 204 (985)
+++||+++ ++++++|| + +||.|+++|+++|+++|.. ..+|+|.|++...+|+.+.++++++++| ++|||||||
T Consensus 31 ~~~ip~~~~~~~~~~~~---~-~se~~~~~~~~~l~~~n~~~~~~~~g~G~~~~~~~p~i~~~~~~~~~~-~~~tpYq~e 105 (481)
T PRK04366 31 ESLLPEELLRKEPPELP---E-VSELEVVRHYTRLSQKNYGVDTGFYPLGSCTMKYNPKINEKVARLPGF-AELHPLQPE 105 (481)
T ss_pred cccCCHHHhcCCCCCCC---C-CCHHHHHHHHHHHHhcCCCCCcceecCcccCCCCCHHHHHHHHhCcch-hcCCCCCCh
Confidence 45799999 88889998 4 9999999999999999987 5699999976666777777899999998 699999999
Q ss_pred -HhhhHHHHHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHH-hh---hhc--CCCCEEEEcCCCChhHHHHHHHhhc
Q 001989 205 -IAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMC-NN---IQK--GKKKTFIIASNCHPQTIDICITRAD 277 (985)
Q Consensus 205 -~sqg~l~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a-~~---~~~--~~g~~Vlv~~~~H~s~~~~~~~~a~ 277 (985)
++||+++.++++|+++++++|++ ++++++++++..+++.++ .+ ..+ +++++||+++..||++..+++
T Consensus 106 ~~sqG~lel~~~~~~~la~l~G~~--~~~l~~~~GA~a~~~~l~~~r~~~~~~Gd~~~~~Vlv~~~~hp~~~~~~~---- 179 (481)
T PRK04366 106 ETVQGALELMYELQEWLKEITGMD--AVTLQPAAGAHGELTGLLMIRAYHEARGDTKRTEVIVPDSAHGTNPASAA---- 179 (481)
T ss_pred hhhhHHHHHHHHHHHHHHHHhCCC--ceEEEeCcHHHHHHHHHHHHHHHhhccCcCCCCEEEEcCCccHhHHHHHH----
Confidence 99999999999999999999997 588888877766665442 22 121 134599999999999998864
Q ss_pred CCCeEEEEeCc--------hhhhc-cCCCEeEEEEEcCCCCeee-ccHHHHHHHHHhCCcEEEE-EecCcc-ccCCCCCC
Q 001989 278 GFDIKVVVSDL--------KDIDY-KSGDVCGVLVQYPGTEGEV-LDYGDFIKNAHANGVKVVM-ATDLLA-LTILKPPG 345 (985)
Q Consensus 278 ~~gi~v~~v~~--------~~l~~-l~~~t~~V~v~~pn~~G~v-~di~~I~~~a~~~galliV-~a~~~~-lg~l~~~~ 345 (985)
..|++++.++. ++|++ ++++|++|++++||++|.+ .|+++|+++||++|++++| ++++.+ +|.+ +|+
T Consensus 180 ~~G~~vv~v~~~~~~~~D~e~L~~~i~~~t~~V~v~~Pn~tG~~~~dl~eI~~~a~~~gal~iVD~a~~~~~~g~~-~~~ 258 (481)
T PRK04366 180 MAGFKVVEIPSNEDGLVDLEALKAAVGEDTAALMLTNPNTLGLFERNILEIAEIVHEAGGLLYYDGANLNAILGKA-RPG 258 (481)
T ss_pred HcCCEEEEeecCCCCCcCHHHHHhhcccCCeEEEEeCCCCccccchHHHHHHHHHHHcCCEEEEEecChhhhcccC-Ccc
Confidence 46888888765 34656 7889999999999999988 5899999999999999999 677666 4444 789
Q ss_pred cccceEEEecC-ccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchh
Q 001989 346 ELGADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQ 424 (985)
Q Consensus 346 ~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~ 424 (985)
++|||++++++ |+|++|+++||||+|++++++++.++||++++|+ +|+ +|++++| |+|||||+++|+ ++
T Consensus 259 ~~GaD~~~~~~hK~l~~P~g~Ggp~~G~l~~~~~~~~~lp~~~v~~----~g~-~~~l~~~-r~~~i~r~~a~t----~~ 328 (481)
T PRK04366 259 DMGFDVVHLNLHKTFSTPHGGGGPGSGPVGVKEELAPFLPVPVVEK----DGD-RYRLDYD-RPKSIGRVRAFY----GN 328 (481)
T ss_pred ccCCCEEEEechhhcCCCCCCCCCCeeeeeehhhhHhhCCCCeeec----cCC-ceeeccc-ccccCCCccccc----Cc
Confidence 99999999999 9999999999999999999999999999999984 245 6999998 999999999885 35
Q ss_pred HHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEc-CCCCcceEEEecC-----C--HHHHHHHHHHcC
Q 001989 425 ALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQ-GLPFFDTVKVKCA-----D--AHAIASAAYKIE 496 (985)
Q Consensus 425 ~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~-~~~~~~~~~~~~~-----~--~~~v~~~L~~~G 496 (985)
.+.++.+..|+.++|++|+++++++++++++||+++|+++ +++. ..++++++.|..+ + +.++.++|.++|
T Consensus 329 ~l~~~~a~~~l~~~G~~Gl~~~a~~~~~~a~~l~~~L~~~--~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~L~~~G 406 (481)
T PRK04366 329 FGVLVRAYAYIRSLGAEGLREVSEDAVLNANYLKARLKDI--YDLPYDRPCMHEFVLSGKKLKETGVRTLDIAKRLLDYG 406 (481)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh--CcccCCCCeeEEEEEECccccccCCCHHHHHHHHHHCC
Confidence 6888888889999999999999999999999999999986 3333 3456677777542 2 889999999999
Q ss_pred ceeee-----ecCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 497 MNLRV-----VDSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 497 I~~~~-----~~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
|.++. ...+++|+|+|++||++|||+|+++|.+
T Consensus 407 i~~~~~~~p~~~~~~l~is~~e~~t~edid~l~~~l~~ 444 (481)
T PRK04366 407 FHPPTIYFPLIVPEALMIEPTETESKETLDAFIAAMKQ 444 (481)
T ss_pred ccCCccccccccCCeEEEcccCCCCHHHHHHHHHHHHH
Confidence 98752 1257899999999999999999999975
|
|
| >COG0403 GcvP Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-50 Score=435.64 Aligned_cols=407 Identities=23% Similarity=0.324 Sum_probs=330.1
Q ss_pred CHHHHHHHHHHHhCCCCCCCCHHhhhhhhhccCCCCccCC-CCCCCCccccCCCCHHHHHHHHHHHhccccCcccccccc
Q 001989 516 TLEDVDKLFIVFAGGKSVPFTAASLAEEVETAIPSGLTRE-SPYLTHPVFNKYHTEHELLRYIHLLQSKELSLCHSMIPL 594 (985)
Q Consensus 516 t~edId~li~aL~~~~~~~~~~~~l~~~~~~~ip~~~~~~-~~~~~~p~~~~~~se~e~~~~l~~l~~~~~~~~~~~~~l 594 (985)
+.+|.+.++++++.+ |+|+||. ++||+++|.+ ..++.+ ++++||.|+++++++++++|..+ .+.+..
T Consensus 15 ~~~d~~~ML~~iG~~-----Sld~L~~---~~IP~~Ir~~~~~~~~~---~~~~sE~e~l~~l~~ia~kN~~~-~sfiG~ 82 (450)
T COG0403 15 SSADQQEMLAAIGVS-----SLDELFS---QDIPPSIRKKLDTLLPL---PKPLSEYEALAELKEIASKNKVF-TSFIGA 82 (450)
T ss_pred ChHHHHHHHHHcCCC-----CHHHHhh---ccCCHHHHhcccccCCC---CCCCCHHHHHHHHHHHHhcCchh-hhhccC
Confidence 349999999999998 8999984 4799999876 122233 47889999999999999999743 223334
Q ss_pred cccccCCCccccccccccccccc-cCCCCchhhhhhHHHHHHHHHHHHHHHhCCCccc--eecCcHHHHHHHHHHHHHHH
Q 001989 595 GSCTMKLNATTEMMPVTWPSFAN-IHPFAPADQAQGYQEMFNNLGEWLCTITGFDSFS--LQPNAGAAGEYAGLMVIRAY 671 (985)
Q Consensus 595 G~~t~~~~~~~~~~~~~~~~f~~-~~p~~p~e~~~G~~~~~~e~~~~la~l~G~~~~~--~~~~sGa~a~~a~l~air~~ 671 (985)
|++..++|+......+++++|++ |+|||| |++||.+|++.|+|+++++|+|++.++ ++..+++.|+ |++|+.|.
T Consensus 83 GyY~~~~P~vI~rnile~pewyTaYTPYQp-EISQGrLqaLfefQtlv~dLTGm~VANASm~DeaTAaAE-Am~ma~r~- 159 (450)
T COG0403 83 GYYDTYTPPVILRNILENPEWYTAYTPYQP-EISQGRLEALFEFQTLVADLTGLDVANASMLDEATAAAE-AMLMAKRV- 159 (450)
T ss_pred cccCCcCcHHHHHHhhcCccccccCCCCch-hhhhHHHHHHHHHHHHHHHHhCCCcccchhhhhHHHHHH-HHHHHHHh-
Confidence 45667777777767789999999 999999 999999999999999999999999864 5555555555 88887764
Q ss_pred HHhcCCCCCCEEEEcCCCCcccHHH----HHHCCcEEEEEcCCCCCCCCHHHHHHHHHhcCCCEEEEEEEcCCCcccccc
Q 001989 672 HKARGDHHRNVCIIPVSAHGTNPAT----AAMCGMKIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEE 747 (985)
Q Consensus 672 ~~~~g~~~~~~IIv~~~~Hg~~~~~----a~~~G~~vv~v~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~pn~~G~i~~ 747 (985)
.+ .++++++++...|+.+-.. ++..|++++.++.+ |+++|+++ + ..++.+|++++||++|.+.+
T Consensus 160 --~k--~k~~~~~V~~~vhpqt~~Vl~Tra~~~g~~i~~~~~~-----d~~~l~~~-~--~~~~~gv~vQyP~~~G~~~~ 227 (450)
T COG0403 160 --TK--KKRNKFLVPKDVHPQTLDVLRTRAEGLGIEIEVVDAD-----DLDDLESA-D--DGDVFGVLVQYPNTFGIVEE 227 (450)
T ss_pred --hc--CcCceEEecCCCCHHHHHHHHhhcccCceEEEEeccc-----hhhhhhhc-c--ccCeEEEEEecCCCCCccch
Confidence 12 2468899999877655443 34678999988875 88899888 4 15899999999999995555
Q ss_pred CHHHHHHHHHHcCCEEEEEccccccccCCCCCCccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccC
Q 001989 748 GIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVST 827 (985)
Q Consensus 748 di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~ 827 (985)
|+++|.+.+|++|++++| ++.+.+++.+..||++|+||+++++ +-|++|++||||++|++++++++.+.+||+++|.+
T Consensus 228 d~~~l~~~~h~~~al~~v-~aDplaL~LL~pPGe~GADIvvG~~-QrfGvPmgfGGPhag~fA~~~~~~R~mPGRlVG~S 305 (450)
T COG0403 228 DLRALIEAAHSAGALVIV-AADPLALGLLKPPGEFGADIVVGSA-QRFGVPMGFGGPHAGYFAVKDEFKRQMPGRLVGVS 305 (450)
T ss_pred hHHHHHHHHhhcCCEEEE-EechhHhhccCCccccCCceEEecC-cccCCCcCCCCcceeeeeEhHhHhhcCCCceeeee
Confidence 899999999999999999 8888899999999999999999998 56999999999999999999999999999999987
Q ss_pred CCC-C------------CC-CCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc---cC
Q 001989 828 GGI-P------------AP-EKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK---HY 890 (985)
Q Consensus 828 ~~~-~------------~~-~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~---g~ 890 (985)
.|. + +| +|+|+|+|||++ +++.+.+|..|+.++|++|++++++++++++.|++++|++ ++
T Consensus 306 ~D~~G~~A~rLaLQTREQHIRReKATSNICTn---QaLlA~~As~y~~~hGp~GLk~iA~r~~~~a~~la~~L~~~~~g~ 382 (450)
T COG0403 306 VDAAGKRAFRLALQTREQHIRREKATSNICTN---QALLALAASMYAVYHGPQGLKEIAERIHRLAAYLAAGLKEIGAGV 382 (450)
T ss_pred ecCCCCchhhhhHHHHHHHHhhhccchhhhHH---HHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhcCCce
Confidence 654 2 22 579999999986 7888888899999999999999999999999999999995 45
Q ss_pred CeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCCCCCCCEEEEeccCCCCHHHHHHHHccCChhH
Q 001989 891 PILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKSWTGIVMLSSPSEK 969 (985)
Q Consensus 891 ~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~~p~~~~lris~t~~~t~eeId~~~~~~~l~~ 969 (985)
++.. ..+|.++.++++ ......+.++....|+..+... +..+.|+++|.+|++||+. ++.++..
T Consensus 383 ~~~~----~~fFdt~~v~~~------~~~~~~l~~~~~~~G~~L~~~~---~~~~~ia~tEt~t~~~i~~--l~~~~~~ 446 (450)
T COG0403 383 ELVF----DHFFDTFTVRVP------EEVAEALLAAAIAGGINLRRVD---ADTVLIALTETTTKEDIDA--LVAAFGG 446 (450)
T ss_pred Eecc----ccceeeEEEecc------hhHHHHHHHHHHhcCCceeeec---CCceEEEeecccCHHHHHH--HHHHHhh
Confidence 5543 257888888875 1224455555555666665443 3689999999999999999 5555543
|
|
| >PRK12566 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-50 Score=481.09 Aligned_cols=392 Identities=17% Similarity=0.251 Sum_probs=326.0
Q ss_pred CCHHHHHHHHHHhC-CC---CHHHh----hhhcCCCcc-ccCC-CCCCCCCCCCCHHHHHHHHHHHhcCCCc---cceec
Q 001989 105 ATPEDQAKMSELVG-LD---NLDSL----IDATVPKSI-RIDS-MKFSKFDEGLTESQMIEHMQKLASMNKV---YKSFI 171 (985)
Q Consensus 105 ~~~~~~~~ml~~~g-~~---~~~~l----~~~~ip~~~-~~~~-~~lp~~~~~~se~e~~~~~~~l~~~n~~---~~~~l 171 (985)
.|.+|+++.++.++ .+ +.+.+ +...||+.+ |+.+ +.+|.|...+||.|++|||++|++||.. ...||
T Consensus 426 ~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~p~~~~r~~~~~~~p~f~~~~SE~el~r~~~~La~kn~~~~~~~~~L 505 (954)
T PRK12566 426 CDEATVARLFDIFLGADHGLDVAALDQGALAEGIPAVLQRRTAYLQHPVFNAHHSETEMLRYLKQLENKDLALNQSMIPL 505 (954)
T ss_pred CCHHHHHHHHHHhcCCCcccchhhhccccccccCchhhhcCCccccCcccccCCCHHHHHHHHHHHHhcCcCcccCcccC
Confidence 46899999999994 32 12222 122499999 7776 6678777889999999999999999986 34699
Q ss_pred CC-----CCCCCCCcHHHHHHHHhCCccccccCCChh-hHhhhHHHHHHHHHHHHHHhcCCCCcceeeccchHHHHH-HH
Q 001989 172 GM-----GYYNTHVPPVILRNIMENPAWYTQYTPYQA-EIAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAE-AM 244 (985)
Q Consensus 172 G~-----g~y~~~~p~~v~~~i~~~~~~~t~~~pyq~-e~sqg~l~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~e-a~ 244 (985)
|+ |.|.|++|+ +++||+|. ||||| |.+||+||.++|+|+++|+||||+. +|+++++++.+| |.
T Consensus 506 GsCTmK~n~~~~~~p~-------s~~eF~t~-hPyqp~e~sQG~lq~i~elq~~l~eLtGmd~--~Sl~p~sGA~gE~A~ 575 (954)
T PRK12566 506 GSCTMKLNATSEMIPI-------TWPEFAQL-HPFAPREQAEGYRAMIDELEAWLCAITGFDA--ICMQPNSGAQGEYAG 575 (954)
T ss_pred cccccCcCcHHhhhcc-------cchhhhcC-CCCCchhhhcCHHHHHHHHHHHHHHHHCCCe--EeecCCchHHHHHHH
Confidence 99 999999998 68999999 99999 7999999999999999999999999 699999999999 88
Q ss_pred HHHhhh-h--c--CCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc--------hhhhc-cC---CCEeEEEEEcCC
Q 001989 245 AMCNNI-Q--K--GKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL--------KDIDY-KS---GDVCGVLVQYPG 307 (985)
Q Consensus 245 ~~a~~~-~--~--~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~--------~~l~~-l~---~~t~~V~v~~pn 307 (985)
+|+++. . + .++++||++..+|.++...+ ...|++++.++. ++|++ ++ +++++|++|+||
T Consensus 576 Lmair~yh~~~Ge~~r~~vLIp~saHgtNpasa----~~~GieVv~Vp~D~~G~iDle~L~a~I~~~~~~laaVmiT~Pn 651 (954)
T PRK12566 576 LLAIRRYHRSRGQSQRDICLIPSSAHGTNPASA----QMAGMRVVIVECDPDGNVDLDDLKAKAAAAGDRLSCLMITYPS 651 (954)
T ss_pred HHHHHHHHHhcCCCCCCEEEecccccccCHHHH----HHCCCEEEEeccCCCCCcCHHHHHHHhhccCCCEEEEEEEecC
Confidence 888764 1 1 25789999999997775554 346899998865 35665 65 789999999999
Q ss_pred CCeeec-cHHHHHHHHHhCCcEEEE-EecCccccCCCCCCcccceEEEecC-ccccccCCCCCCcEEEEEEchhhHhcCC
Q 001989 308 TEGEVL-DYGDFIKNAHANGVKVVM-ATDLLALTILKPPGELGADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMP 384 (985)
Q Consensus 308 ~~G~v~-di~~I~~~a~~~galliV-~a~~~~lg~l~~~~~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp 384 (985)
+.|.++ |+++|+++||++|++++| ++|+.+++.+..|+++||||+++++ |+|++|+++||||+|++++++.+.+.+|
T Consensus 652 t~Gv~e~~V~eI~~iah~~Galv~vDgA~~~a~~~l~~Pg~~GADi~~~s~HKtf~~P~G~GGP~vG~iav~~~L~pfLp 731 (954)
T PRK12566 652 THGVYEEGIREICEVVHQHGGQVYMDGANLNAQVGLARPADIGADVSHMNLHKTFCIPHGGGGPGMGPIGVRAHLAPFVA 731 (954)
T ss_pred cCceecchHHHHHHHHHHcCCEEEEEeeChhhccCCCChhhcCCCEEEecCCcccCcCccCCCCccchhhhhhhhhhhcc
Confidence 998876 599999999999999888 7888888888889999999999997 9999999999999999999996665554
Q ss_pred CceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcC
Q 001989 385 GRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKL 464 (985)
Q Consensus 385 ~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~ 464 (985)
+.- | +|.+|++ .|+++|||+|+++++.+..|.+|+..+|++ +++.++.+..+++|++++|.+
T Consensus 732 ~~P-~--~d~~G~~-------------~r~ga~S~~~~gsa~~l~~A~~Yi~~lG~e-Lk~aa~~ailnAnYla~rL~~- 793 (954)
T PRK12566 732 NHP-V--VPVEGPD-------------PNNGAVSAAPWGSASILPISWMYIAMMGPQ-LADASEVAILSANYLANQLGG- 793 (954)
T ss_pred CCC-C--cCCCCCC-------------CCCCceeecccchHHHHHHHHHHHHHHCHH-HHHHHHHHHHHHHHHHHHhHh-
Confidence 220 1 2333432 147899999999999999999999999999 999999999999999999987
Q ss_pred CCeEEc-CC---CCcceEEEecC-------C-HHHHHHHHHHcCceeeee---cCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 465 GTVEVQ-GL---PFFDTVKVKCA-------D-AHAIASAAYKIEMNLRVV---DSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 465 g~~~~~-~~---~~~~~~~~~~~-------~-~~~v~~~L~~~GI~~~~~---~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
+ +.+. .+ ++++++.+... . +.++.++|.++||....+ ..+++|+|+||++|++|||+|+++|..
T Consensus 794 ~-~~v~~~~~~~~~~hEfii~~~~l~~~~g~~~~dvakRL~d~Gihapt~~fPv~~~LmIepTE~eskeEIDrf~eAL~~ 872 (954)
T PRK12566 794 A-FPVLYRGRNERVAHECILDLRPLKAQTGISEEDVAKRLMDYGFHAPTMSFPVPGTLMVEPTESESKAELDRFVEAMLS 872 (954)
T ss_pred h-CCCCcCCCCCCeeeEEEEEccccccccCCCHHHHHHHHHHCCcEEeEEeeccCCEEEEEeeeeCCHHHHHHHHHHHHH
Confidence 3 5554 32 56788887754 2 688999999999987543 268999999999999999999999974
|
|
| >PRK04366 glycine dehydrogenase subunit 2; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-49 Score=463.82 Aligned_cols=411 Identities=45% Similarity=0.774 Sum_probs=342.0
Q ss_pred ccCCCCccCCCCCCCCccccCCCCHHHHHHHHHHHhccccCcccccccccccccCCCccccccccccccccccCCCCchh
Q 001989 546 TAIPSGLTRESPYLTHPVFNKYHTEHELLRYIHLLQSKELSLCHSMIPLGSCTMKLNATTEMMPVTWPSFANIHPFAPAD 625 (985)
Q Consensus 546 ~~ip~~~~~~~~~~~~p~~~~~~se~e~~~~l~~l~~~~~~~~~~~~~lG~~t~~~~~~~~~~~~~~~~f~~~~p~~p~e 625 (985)
.+||+++|+++++ .+| + +||.|+++++++|+++|...+.+++++|+|++++++........+++|.+||||||..
T Consensus 32 ~~ip~~~~~~~~~-~~~---~-~se~~~~~~~~~l~~~n~~~~~~~~g~G~~~~~~~p~i~~~~~~~~~~~~~tpYq~e~ 106 (481)
T PRK04366 32 SLLPEELLRKEPP-ELP---E-VSELEVVRHYTRLSQKNYGVDTGFYPLGSCTMKYNPKINEKVARLPGFAELHPLQPEE 106 (481)
T ss_pred ccCCHHHhcCCCC-CCC---C-CCHHHHHHHHHHHHhcCCCCCcceecCcccCCCCCHHHHHHHHhCcchhcCCCCCChh
Confidence 4799999999886 677 4 9999999999999999988667788889999999998777777888888999999933
Q ss_pred hhhhHHHHHHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEE
Q 001989 626 QAQGYQEMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIV 705 (985)
Q Consensus 626 ~~~G~~~~~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv 705 (985)
.+||.+++++++++++++++|++.+++.+++|+.++..++.+++.+...+|..++++||+++..|+.+...++..|++++
T Consensus 107 ~sqG~lel~~~~~~~la~l~G~~~~~l~~~~GA~a~~~~l~~~r~~~~~~Gd~~~~~Vlv~~~~hp~~~~~~~~~G~~vv 186 (481)
T PRK04366 107 TVQGALELMYELQEWLKEITGMDAVTLQPAAGAHGELTGLLMIRAYHEARGDTKRTEVIVPDSAHGTNPASAAMAGFKVV 186 (481)
T ss_pred hhhHHHHHHHHHHHHHHHHhCCCceEEEeCcHHHHHHHHHHHHHHHhhccCcCCCCEEEEcCCccHhHHHHHHHcCCEEE
Confidence 99999999999999999999999878888888887755555565544334422456899999999999888999999999
Q ss_pred EEcCCCCCCCCHHHHHHHHHhcCCCEEEEEEEcCCCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCccCCc
Q 001989 706 SVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIGAD 785 (985)
Q Consensus 706 ~v~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~pn~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~g~D 785 (985)
.+|++++|.+|+++|+++++ ++|++|++++||++|++..|+++|+++||++|++++||++|+.++.+...|+++|+|
T Consensus 187 ~v~~~~~~~~D~e~L~~~i~---~~t~~V~v~~Pn~tG~~~~dl~eI~~~a~~~gal~iVD~a~~~~~~g~~~~~~~GaD 263 (481)
T PRK04366 187 EIPSNEDGLVDLEALKAAVG---EDTAALMLTNPNTLGLFERNILEIAEIVHEAGGLLYYDGANLNAILGKARPGDMGFD 263 (481)
T ss_pred EeecCCCCCcCHHHHHhhcc---cCCeEEEEeCCCCccccchHHHHHHHHHHHcCCEEEEEecChhhhcccCCccccCCC
Confidence 99998889999999999997 789999999999999883389999999999999999999998775555578999999
Q ss_pred EEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCC----CCC----CCCCCCCCCCCcchhhhHHHHHHH
Q 001989 786 VCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGI----PAP----EKSQPLGTIAAAPWGSALILPISY 857 (985)
Q Consensus 786 i~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~----~~~----~~~~~~~~i~s~~~g~~~~~~~a~ 857 (985)
++++++||||+.|+|+||||+|++++++++.+++|+++++..+.. .++ +|.+++ .++.+.+.++|
T Consensus 264 ~~~~~~hK~l~~P~g~Ggp~~G~l~~~~~~~~~lp~~~v~~~g~~~~l~~~r~~~i~r~~a~-------t~~~l~~~~a~ 336 (481)
T PRK04366 264 VVHLNLHKTFSTPHGGGGPGSGPVGVKEELAPFLPVPVVEKDGDRYRLDYDRPKSIGRVRAF-------YGNFGVLVRAY 336 (481)
T ss_pred EEEEechhhcCCCCCCCCCCeeeeeehhhhHhhCCCCeeeccCCceeecccccccCCCcccc-------cCchHHHHHHH
Confidence 999999999999999999999999999999999998876532211 111 122222 12556778899
Q ss_pred HHHHHhcHHHHHHHHHHHHHHHHHHHHHhhccCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCC
Q 001989 858 TYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTM 937 (985)
Q Consensus 858 a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~ 937 (985)
.|+..+|.+|++++++++.++++|++++|++.+++.+. .++++++++++..+. ..|++..++.++|.++||+++..
T Consensus 337 ~~l~~~G~~Gl~~~a~~~~~~a~~l~~~L~~~~~~~~~---~~~~~~~~~~~~~~~-~~g~~~~~v~~~L~~~Gi~~~~~ 412 (481)
T PRK04366 337 AYIRSLGAEGLREVSEDAVLNANYLKARLKDIYDLPYD---RPCMHEFVLSGKKLK-ETGVRTLDIAKRLLDYGFHPPTI 412 (481)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhCcccCC---CCeeEEEEEECcccc-ccCCCHHHHHHHHHHCCccCCcc
Confidence 99999999999999999999999999999876565442 356778888754221 12567899999999999998866
Q ss_pred CCC--CCCEEEEeccCCCCHHHHHHHHccCChhHHHHhhccC
Q 001989 938 SWP--VPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRLKMG 977 (985)
Q Consensus 938 ~~p--~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~~~~ 977 (985)
.+| ..+.+|+|+++++|++|||+ +++.|+++.++++..
T Consensus 413 ~~p~~~~~~l~is~~e~~t~edid~--l~~~l~~i~~~~~~~ 452 (481)
T PRK04366 413 YFPLIVPEALMIEPTETESKETLDA--FIAAMKQIAEEAKEN 452 (481)
T ss_pred ccccccCCeEEEcccCCCCHHHHHH--HHHHHHHHHHHHHhC
Confidence 665 35799999999999999999 889999998877654
|
|
| >PRK05367 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-47 Score=469.13 Aligned_cols=402 Identities=20% Similarity=0.298 Sum_probs=320.1
Q ss_pred cCCCCCHHHHHHHHHHhCCC--CHHHhh-------hhcCCCcc-ccCCCCCC-CCCCCCCHHHHHHHHHHHhcCCCcc-c
Q 001989 101 RHNSATPEDQAKMSELVGLD--NLDSLI-------DATVPKSI-RIDSMKFS-KFDEGLTESQMIEHMQKLASMNKVY-K 168 (985)
Q Consensus 101 ~~~~~~~~~~~~ml~~~g~~--~~~~l~-------~~~ip~~~-~~~~~~lp-~~~~~~se~e~~~~~~~l~~~n~~~-~ 168 (985)
.+--+|++|++..++.++.. +++.+- ...||+.+ |+.++.+| .|..-.||.|++|||++|++||... .
T Consensus 420 ~~e~~t~~did~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~f~~~~sE~e~~r~~~~l~~kn~~~~~ 499 (954)
T PRK05367 420 LDETTTREDLAALLAVFGGAALDVDALDADVADASASALPAALLRTSAYLTHPVFNRYHSETEMMRYLRRLEDKDLALDR 499 (954)
T ss_pred ecccCCHHHHHHHHHHHcccccchhhhhhhhcccccccCCHHHhcCCcccCCcccCCCCCHHHHHHHHHHHHhcCcCccc
Confidence 33447899999999999843 222221 12499999 88877776 2333469999999999999999873 3
Q ss_pred eecCCC-CCCCCCcHHHHHHHHhCCccccccCCChh-hHhhhHHHHHHHHHHHHHHhcCCCCcceeeccchHHHHH-HHH
Q 001989 169 SFIGMG-YYNTHVPPVILRNIMENPAWYTQYTPYQA-EIAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAE-AMA 245 (985)
Q Consensus 169 ~~lG~g-~y~~~~p~~v~~~i~~~~~~~t~~~pyq~-e~sqg~l~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~e-a~~ 245 (985)
++++.| ||.++.|. +.+.++++++|++ |||||| |++||++|+++|+|+++|+|+|++ ++++++++++.+| +.+
T Consensus 500 ~~i~lGsct~~~~p~-~~~~~~~~~~f~~-~hP~qp~e~~qG~l~~i~e~q~~l~eltG~d--~~sl~~~~ga~ge~agL 575 (954)
T PRK05367 500 SMIPLGSCTMKLNAA-AEMIPITWPEFAN-LHPFAPAEQAAGYRELIDQLEAWLAEITGYD--AVSLQPNAGAQGEYAGL 575 (954)
T ss_pred ceeeCCcCCCcCCHH-HHHHHHhCccccc-cCCCChHHHHHHHHHHHHHHHHHHHHHHCCC--CEEECccHHHHHHHHHH
Confidence 444444 55555554 4469999999955 999999 899999999999999999999998 5999999988888 555
Q ss_pred HHhhh---hcC--CCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc--------hhhhc-cC---CCEeEEEEEcCCC
Q 001989 246 MCNNI---QKG--KKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL--------KDIDY-KS---GDVCGVLVQYPGT 308 (985)
Q Consensus 246 ~a~~~---~~~--~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~--------~~l~~-l~---~~t~~V~v~~pn~ 308 (985)
++.+. .++ ++++|++++..|+++...+. ..|+++++++. ++|++ ++ +++++|++|+||+
T Consensus 576 ~a~r~~~~~~G~~~r~~vlis~~aH~snp~sa~----~~G~~vv~v~~d~~G~iD~~~L~~~i~~~~~~la~V~it~pst 651 (954)
T PRK05367 576 LAIRAYHESRGEGHRDVCLIPSSAHGTNPASAV----MAGMKVVVVACDENGNIDLDDLRAKAEEHADNLAAIMITYPST 651 (954)
T ss_pred HHHHHHhhccCCCCCCEEEEEchhhhhhHHHHH----HCCCEEEEECCCCCCCcCHHHHHHHHhccCCCeEEEEEEcCCC
Confidence 55542 111 34579999999999887764 46889998865 34655 54 3689999999999
Q ss_pred Ceee-ccHHHHHHHHHhCCcEEEE-EecCccccCCCCCCcccceEEEecC-ccccccCCCCCCcEEEEEEchhhHhcCCC
Q 001989 309 EGEV-LDYGDFIKNAHANGVKVVM-ATDLLALTILKPPGELGADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPG 385 (985)
Q Consensus 309 ~G~v-~di~~I~~~a~~~galliV-~a~~~~lg~l~~~~~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~ 385 (985)
.|.+ .|+++|+++||++|++++| ++|+.++..+.+|+++|||++++++ |+|++|+++||||+|++++++.+.++||+
T Consensus 652 ~G~~e~~I~eI~~i~h~~G~~v~VDgA~~~al~~l~~pg~~GADi~~~s~HK~f~~P~G~GGPg~G~l~vr~~l~p~lpg 731 (954)
T PRK05367 652 HGVFEETIREICEIVHEHGGQVYLDGANMNAQVGLARPGDIGADVSHLNLHKTFCIPHGGGGPGVGPIGVKAHLAPFLPG 731 (954)
T ss_pred CeeecCCHHHHHHHHHHcCCEEEEECcChhhccCCCChhhcCCCEEEecCcccCCCCcCCCCCceEEEeecccccccCCC
Confidence 9987 5899999999999999999 6777777677789999999999998 99999999999999999999999999999
Q ss_pred ceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCC
Q 001989 386 RIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLG 465 (985)
Q Consensus 386 ~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g 465 (985)
+.+|.+.+.++. + .. .|+++| +++.+..+.+|+.++|++|++++.+++..+|+|++++|++.
T Consensus 732 ~~v~~~~~~~~~-g-------------~v-~ta~~g--~al~~~~a~~yi~~~G~~Glr~~a~~~~~~A~Yl~~~L~~~- 793 (954)
T PRK05367 732 HPVQIAGGETGI-G-------------AV-SAAPFG--SASILPISWMYIRMMGAEGLRQATEVAILNANYIAKRLKDH- 793 (954)
T ss_pred CccCcCCCCCCc-C-------------cc-hhHHHH--HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHhh-
Confidence 987743322111 1 11 256777 56777888899999999999999999999999999999873
Q ss_pred CeEEc--C--CCCcceEEEecC------C--HHHHHHHHHHcCceeeeec---CCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 466 TVEVQ--G--LPFFDTVKVKCA------D--AHAIASAAYKIEMNLRVVD---SNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 466 ~~~~~--~--~~~~~~~~~~~~------~--~~~v~~~L~~~GI~~~~~~---~~~lris~t~~~t~edId~li~aL~~ 529 (985)
+++. + .++++++.++.. + +.++.++|.++||..+.+. .+.+++++||++|++|||+|+++|..
T Consensus 794 -~~~~~~~~~~~~~~e~i~~~~~~~~~~g~~~~di~krL~d~G~~~~t~~~pv~~~l~i~ptE~~s~~elDr~~~al~~ 871 (954)
T PRK05367 794 -YPVLYTGANGRVAHECILDLRPLKESTGITVDDIAKRLIDYGFHAPTMSFPVAGTLMVEPTESESKAELDRFCDAMIA 871 (954)
T ss_pred -cCccccCCCCCcccceEEEeecccccCCCCHHHHHHHHHHCCCeEeecCCccCCEEEEEeeecCCHHHHHHHHHHHHH
Confidence 5553 2 256778777653 2 7899999999999876532 68999999999999999999999974
|
|
| >PLN02414 glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-45 Score=449.36 Aligned_cols=402 Identities=20% Similarity=0.285 Sum_probs=332.2
Q ss_pred CCCCCHHHHHHHHHHhC-CCCHH-------HhhhhcCCCcc-ccCC-CCCCCCCCCCCHHHHHHHHHHHhcCCCcc-cee
Q 001989 102 HNSATPEDQAKMSELVG-LDNLD-------SLIDATVPKSI-RIDS-MKFSKFDEGLTESQMIEHMQKLASMNKVY-KSF 170 (985)
Q Consensus 102 ~~~~~~~~~~~ml~~~g-~~~~~-------~l~~~~ip~~~-~~~~-~~lp~~~~~~se~e~~~~~~~l~~~n~~~-~~~ 170 (985)
|--+|++|++..++.++ .++++ +-....||+.+ |+.+ |.+|.|..-.||.|++||+++|+++|.+. +++
T Consensus 448 ~e~~T~edId~L~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~r~~~~l~~p~f~~~~se~~~~r~~~~l~~~~~~~~~~~ 527 (993)
T PLN02414 448 DETTTLEDVDKLFKVFAGGKPVPFTAESLAPEVDSSIPSSLARESPYLTHPIFNQYHSEHELLRYLHRLQNKDLSLVHSM 527 (993)
T ss_pred eccCCHHHHHHHHHHHcccccccchhhhhhhhhcccCchhhhccCccccCcccccccCHHHHHHHHHHHhhcccccccCC
Confidence 33478999999999995 32322 11222499998 7665 47887766799999999999999999875 568
Q ss_pred cCCCCCCCCCcHHHHHHHHhCCccccccCCChhh-HhhhHHHHHHHHHHHHHHhcCCCCcceeeccchHHHHH-HHHHHh
Q 001989 171 IGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAE-IAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAE-AMAMCN 248 (985)
Q Consensus 171 lG~g~y~~~~p~~v~~~i~~~~~~~t~~~pyq~e-~sqg~l~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~e-a~~~a~ 248 (985)
+..|.+-.-+++.+.+..++.++ ++..+||||+ ..||.++.++++++++|+++|++ .+++++++|+..| |.++++
T Consensus 528 ~plgsctmk~n~~~~~~~~~~~~-~~~~hp~~p~~~~~g~~~~~~~~r~~la~i~g~~--~v~f~pnaga~ge~a~~~vi 604 (993)
T PLN02414 528 IPLGSCTMKLNATTEMMPVTWPE-FANIHPFAPVDQAQGYQEMFEDLGDLLCEITGFD--SFSLQPNAGAAGEYAGLMVI 604 (993)
T ss_pred ccCcccccccCchhhhhhhcCcc-hhhcCCCCCHHHHHHHHHHHHHHHHHHHHHhCCC--eEEEcCCCcHHHHHHHHHHH
Confidence 88887777799999888889988 4888999998 99999999999999999999994 4999999986544 555543
Q ss_pred h-hhcCCCC----EEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc--------hhhhc-cC---CCEeEEEEEcCCCCe-
Q 001989 249 N-IQKGKKK----TFIIASNCHPQTIDICITRADGFDIKVVVSDL--------KDIDY-KS---GDVCGVLVQYPGTEG- 310 (985)
Q Consensus 249 ~-~~~~~g~----~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~--------~~l~~-l~---~~t~~V~v~~pn~~G- 310 (985)
+ +.+.+|| +||++..+|.++..+|.. .|+++++++. ++|++ ++ ++|++|++|+||+.|
T Consensus 605 ~~~~~~~Gd~~r~~vli~~~aH~sn~a~a~~----~G~~vv~v~~d~~G~vDle~L~~~i~~~~~~ta~V~vt~pSn~gg 680 (993)
T PLN02414 605 RAYHLSRGDHHRNVCIIPVSAHGTNPASAAM----CGMKIVVVGTDAKGNINIEELRKAAEAHKDNLAALMVTYPSTHGV 680 (993)
T ss_pred HHHHhccCCCCCCEEEeCCCcCccCHHHHHH----CCCEEEEeccCCCCCcCHHHHHHHHhccCCCeEEEEEECCCcccc
Confidence 3 2222344 899999999999999864 5889888865 45666 76 489999999996655
Q ss_pred eeccHHHHHHHHHhCCcEEEE-EecCccccCCCCCCcccceEEEecC-ccccccCCCCCCcEEEEEEchhhHhcCCCcee
Q 001989 311 EVLDYGDFIKNAHANGVKVVM-ATDLLALTILKPPGELGADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIV 388 (985)
Q Consensus 311 ~v~di~~I~~~a~~~galliV-~a~~~~lg~l~~~~~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~v 388 (985)
...||++|+++||++|++++| ++|+.+++.+.+|+++|+||+++++ |+|++|+|+||||+|++++++++.++||++.+
T Consensus 681 ~e~~I~eI~~iah~~Galv~vDgAq~~a~~~l~~p~~~GaD~~~~s~HK~f~~P~G~GGPg~G~l~~~~~L~p~lPg~~v 760 (993)
T PLN02414 681 YEEGIDEICDIIHDNGGQVYMDGANMNAQVGLTSPGFIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPV 760 (993)
T ss_pred ccchHHHHHHHHHHcCCEEEEEecCHHhccCcCCccccCCCEEEecCCccCCcCcccCCCCeeeEEEchhhcccCCCCcc
Confidence 556799999999999999999 7888888888889999999999998 88999999999999999999999999999988
Q ss_pred eeeecCCCCcceeeecccccccccccccCCCccc------hhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHh
Q 001989 389 GVSIDSSGKPALRVAMQTREQHIRRDKATSNICT------AQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLK 462 (985)
Q Consensus 389 G~t~d~~g~~~~~l~l~tre~~irre~atsni~t------~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~ 462 (985)
|.+. +| .||++ |+|||| ++++.+..|.+|+..+|.+|++++++++..+++|++++|+
T Consensus 761 ~~~~------~~----------~~r~~-~s~iGt~~~a~~g~al~l~~A~~yi~~lG~~Gl~~~a~~a~~nAnYl~~rL~ 823 (993)
T PLN02414 761 VPTG------GI----------PRPEK-TQPLGTISAAPWGSALILPISYTYIAMMGSEGLTDASKIAILNANYMAKRLE 823 (993)
T ss_pred ccCC------Cc----------ccccC-CCCcCCccchhhhhHHHHHHHHHHHHHHCHhHHHHHHHHHHHHHHHHHHHHH
Confidence 7421 12 14566 899999 7888888899999999999999999999999999999998
Q ss_pred cCCCeEEc--C--CCCcceEEEecC-------C-HHHHHHHHHHcCceeeee---cCCeEEEEeccCCCHHHHHHHHHHH
Q 001989 463 KLGTVEVQ--G--LPFFDTVKVKCA-------D-AHAIASAAYKIEMNLRVV---DSNTVTASFDETTTLEDVDKLFIVF 527 (985)
Q Consensus 463 ~~g~~~~~--~--~~~~~~~~~~~~-------~-~~~v~~~L~~~GI~~~~~---~~~~lris~t~~~t~edId~li~aL 527 (985)
+ + +++. + .+++++|++..+ . +.+++++|.++||..... ..+++|+++||++|++|||+|+++|
T Consensus 824 ~-~-~~~~~~~~~~~~~hEfv~~~~~l~~~~g~~~~di~krL~d~Gihapt~~~pv~~~lmiepTE~~skeelDrf~~al 901 (993)
T PLN02414 824 G-H-YPVLFRGKNGTCAHEFIIDLRPFKNTAGIEPEDVAKRLMDYGFHAPTMSWPVPGTLMIEPTESESKAELDRFCDAL 901 (993)
T ss_pred h-h-CCccccCCCCCeeeeEEEeccccccccCCCHHHHHHHHHHcCcEEeeeccccCCEEEEEeeeeCCHHHHHHHHHHH
Confidence 7 3 5543 2 267889888765 2 689999999999987543 2689999999999999999999999
Q ss_pred hC
Q 001989 528 AG 529 (985)
Q Consensus 528 ~~ 529 (985)
..
T Consensus 902 ~~ 903 (993)
T PLN02414 902 IS 903 (993)
T ss_pred HH
Confidence 74
|
|
| >COG1003 GcvP Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-42 Score=376.20 Aligned_cols=389 Identities=20% Similarity=0.297 Sum_probs=302.8
Q ss_pred CCCCHHHhhhhcCCCccccCCCCCCCCCCCCCHHHHHHHHHHHhcCCCccc-eecCCCCCCCCCcHHHHHHHHhCCcccc
Q 001989 118 GLDNLDSLIDATVPKSIRIDSMKFSKFDEGLTESQMIEHMQKLASMNKVYK-SFIGMGYYNTHVPPVILRNIMENPAWYT 196 (985)
Q Consensus 118 g~~~~~~l~~~~ip~~~~~~~~~lp~~~~~~se~e~~~~~~~l~~~n~~~~-~~lG~g~y~~~~p~~v~~~i~~~~~~~t 196 (985)
|++..++-....+|..++++.+.+| ..||.|++||+++|+++|.... .+.-.|.+-.-+++.+.+..+..++| .
T Consensus 19 ~~~l~~~~~~~~L~~~~~r~~~~~P----e~SE~e~~Rh~~rLs~kn~avd~~m~PLGSCTMK~Np~~e~~~~~~p~f-~ 93 (496)
T COG1003 19 GYSLPEQVVEEYLPHPVFRRYPPLP----EHSETEMVRHYTRLSQKDLAVDRGMIPLGSCTMKLNPKAEMKPATWPEF-A 93 (496)
T ss_pred ccccccccchhhcCcHHhhcCCCCc----cccHHHHHHHHHHHHhcccccccCccCCcccccccCchhhcccccccch-h
Confidence 3333444444457777733333346 7999999999999999998762 24444444345888888777788885 5
Q ss_pred ccCCChhh-HhhhHHHHHHHHHHHHHHhcCCCCcceeeccchHHHHHHHH-HHhh-hh--c--CCCCEEEEcCCCChhHH
Q 001989 197 QYTPYQAE-IAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMA-MCNN-IQ--K--GKKKTFIIASNCHPQTI 269 (985)
Q Consensus 197 ~~~pyq~e-~sqg~l~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~-~a~~-~~--~--~~g~~Vlv~~~~H~s~~ 269 (985)
..+||||+ ..||.++.++++|++++++||||. +|+++++.+..|-+. ++++ +. + +.|+.+|++++.|..+-
T Consensus 94 ~iHP~~pe~~vqG~l~li~~Lq~~L~~ITG~Da--vsLQP~AGAqGE~aGll~Ir~YHe~rG~~~R~~~LIP~SAHGTNP 171 (496)
T COG1003 94 NIHPFQPEEQVQGYLELIYELQEWLKEITGMDA--VSLQPNAGAQGEYAGLLAIRAYHESRGEGHRNICLIPDSAHGTNP 171 (496)
T ss_pred hcCCCCChHHHHHHHHHHHHHHHHHHHhcCCce--eeccCCCCcchhhHHHHHHHHHHHHcCCCcCcEEEeeccccCCCh
Confidence 67999998 899999999999999999999998 999998888777554 4444 32 2 26788999999996554
Q ss_pred HHHHHhhcCCCeEEEEeC--------chhhhc-cCCCEeEEEEEcCCCCeeec-cHHHHHHHHHhCCcEEEE-EecCccc
Q 001989 270 DICITRADGFDIKVVVSD--------LKDIDY-KSGDVCGVLVQYPGTEGEVL-DYGDFIKNAHANGVKVVM-ATDLLAL 338 (985)
Q Consensus 270 ~~~~~~a~~~gi~v~~v~--------~~~l~~-l~~~t~~V~v~~pn~~G~v~-di~~I~~~a~~~galliV-~a~~~~l 338 (985)
+-. .-.|++|+.|+ ++||++ ++++++++++|+||+.|.++ +|.+|++++|++|++|++ |++..++
T Consensus 172 ASA----am~G~~VV~V~~~~~G~VDlddLk~k~~~~~AalMiTnPsT~GvFE~~I~ei~~ivH~~Gg~vY~DGANlNA~ 247 (496)
T COG1003 172 ASA----AMAGFKVVVVKCDENGNVDLDDLRAKAEDNLAALMITNPSTLGVFEEDIREICEIVHEAGGQVYYDGANLNAI 247 (496)
T ss_pred hhH----hhcCceEEEEecCCCCCccHHHHHHHhccceeEEEeccCcccccchhhHHHHHHHHHHcCCEEEecCcchhhh
Confidence 442 12477888764 467887 88999999999999999997 899999999999999999 7898888
Q ss_pred cCCCCCCcccceEEEecC-ccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccC
Q 001989 339 TILKPPGELGADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKAT 417 (985)
Q Consensus 339 g~l~~~~~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~at 417 (985)
-.+.+||++|+||+..+. |+|++|||.||||.|.+.|++.+.++||++. .. .+ +.. |.+....+ ..+.|- .
T Consensus 248 vG~~rPGd~G~DV~HlNLHKTF~iPHGGGGPG~GPvgVk~~L~pfLP~p~-~~-~~--~~~-y~~~~~~~-~s~g~~--~ 319 (496)
T COG1003 248 VGLARPGDMGFDVVHLNLHKTFCIPHGGGGPGAGPVGVKAHLAPFLPGPV-VY-HD--VGE-YRLDYDGK-KSIGVS--A 319 (496)
T ss_pred hccccccccccceEEeecccccccCCCCCCCCCCceehHhhccccCCCCc-cc-CC--Ccc-ccccCCCC-ccceee--c
Confidence 778899999999999999 9999999999999999999999999999865 21 01 111 33332111 223232 2
Q ss_pred CCccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEc-CC--CCcceEEEecC------C--HH
Q 001989 418 SNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQ-GL--PFFDTVKVKCA------D--AH 486 (985)
Q Consensus 418 sni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~-~~--~~~~~~~~~~~------~--~~ 486 (985)
.++.+.+. -..+-+|+..+|++||++..+...-+|+|++++|+.. ++++ .. ...++|+++.. + +.
T Consensus 320 a~~Gs~~i--l~~a~~YI~~mG~~GL~~ase~AvLNANYia~rL~~~--y~~~y~~~~~~~HE~ild~r~l~~~~Gv~~~ 395 (496)
T COG1003 320 APYGSASI--LPIAWAYIRMMGADGLKQASEVAVLNANYIARRLKGY--YPVPYTGENRVAHECILDARPLKKETGVRAL 395 (496)
T ss_pred cccCcchH--HHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHhhhc--CccccCCCCcceeEEEeechHhHhhcCCcHH
Confidence 34433332 2456779999999999999999999999999999973 7764 22 35678888765 3 89
Q ss_pred HHHHHHHHcCceeee-----ecCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 487 AIASAAYKIEMNLRV-----VDSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 487 ~v~~~L~~~GI~~~~-----~~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
+|+|+|.+.|++.+. +..++++|.+||..+++|+|+|+++|..
T Consensus 396 DvAKrLlD~GfHaPT~~FPliV~~tLMIEPTEsEsk~eLDrf~dami~ 443 (496)
T COG1003 396 DVAKRLLDYGFHAPTMYFPLIVAGTLMIEPTESESKEELDRFIDAMIA 443 (496)
T ss_pred HHHHHHHhcCCCCCcccCccccccceeecCCCCCCHHHHHHHHHHHHH
Confidence 999999999997643 3579999999999999999999999984
|
|
| >PRK00451 glycine dehydrogenase subunit 1; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-37 Score=360.21 Aligned_cols=411 Identities=24% Similarity=0.352 Sum_probs=310.7
Q ss_pred CCHHHHHHHHHHHhCCCCCCCCHHhhhhhhhccCCCCccCCCCCCCCccccCCCCHHHHHHHHHHHhccccCcccccccc
Q 001989 515 TTLEDVDKLFIVFAGGKSVPFTAASLAEEVETAIPSGLTRESPYLTHPVFNKYHTEHELLRYIHLLQSKELSLCHSMIPL 594 (985)
Q Consensus 515 ~t~edId~li~aL~~~~~~~~~~~~l~~~~~~~ip~~~~~~~~~~~~p~~~~~~se~e~~~~l~~l~~~~~~~~~~~~~l 594 (985)
|+++|++.+++.|+.. |+|+|++ +||+.+|++.+. .+| ++.|+.++++++.+++.+|.......+++
T Consensus 7 ~~~~~~~~~~~~~~~~-----~~~~~~~----~~p~~~~~~~~~-~lp---~~~~~~~v~~~~~~~~~~~~~~~~~~~~l 73 (447)
T PRK00451 7 HTEEDIREMLDAIGVK-----SIDELFA----DIPEELRLKRPL-DLP---PGLSEMELLRHLRELAAKNKTAEEYPSFL 73 (447)
T ss_pred CCHHHHHHHHHHhCCC-----CHHHHHH----hCCHHHHhCCCC-CCC---CCCCHHHHHHHHHHHHhcCCCcCcCcccC
Confidence 6899999999999977 8999984 799999998875 778 45699999999999998776554456788
Q ss_pred cccccCCCccccccc-ccccccc-ccCCCCchhhhhhHHHHHHHHHHHHHHHhCCCccceec-CcHHHHHHHHHHHHHHH
Q 001989 595 GSCTMKLNATTEMMP-VTWPSFA-NIHPFAPADQAQGYQEMFNNLGEWLCTITGFDSFSLQP-NAGAAGEYAGLMVIRAY 671 (985)
Q Consensus 595 G~~t~~~~~~~~~~~-~~~~~f~-~~~p~~p~e~~~G~~~~~~e~~~~la~l~G~~~~~~~~-~sGa~a~~a~l~air~~ 671 (985)
|.+.+.......... .....+. .|+|+++ +.++|.++.+.++++++++++|++..++.. ++|+.+.++++++++.
T Consensus 74 g~g~~~~~~p~~~~~~~~~~~~~~~y~~~~~-~~~~g~~~~~~e~~~~la~l~g~~~~~v~~~~g~t~~~~~~~~a~~~- 151 (447)
T PRK00451 74 GAGAYDHYIPAVVDHIISRSEFYTAYTPYQP-EISQGTLQAIFEYQTMICELTGMDVANASMYDGATALAEAALMAVRI- 151 (447)
T ss_pred cccccCCcCcHHHHHHHhchhHHHhcCCCCC-ccchHHHHHHHHHHHHHHHHhCCCcceEEecCcHHHHHHHHHHHHHh-
Confidence 864443322222112 2233443 4889998 889999999999999999999998765544 4445455555554431
Q ss_pred HHhcCCCCCCEEEEcCCCCcccHHHHH----HCCcEEEEEcCCCCCCCCHHHHHHHHHhcCCCEEEEEEEcCCCcccccc
Q 001989 672 HKARGDHHRNVCIIPVSAHGTNPATAA----MCGMKIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEE 747 (985)
Q Consensus 672 ~~~~g~~~~~~IIv~~~~Hg~~~~~a~----~~G~~vv~v~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~pn~~G~i~~ 747 (985)
.++++||+++.+|+++...++ ..|++++.+|++++ .+|+++|+++++ ++|++|++++||++|.++
T Consensus 152 ------~~g~~Vlv~~~~~~~~~~~~~~~~~~~G~~~~~v~~~~~-~~d~~~l~~~i~---~~t~~v~l~~pn~tG~v~- 220 (447)
T PRK00451 152 ------TKRKKVLVSGAVHPEYREVLKTYLKGQGIEVVEVPYEDG-VTDLEALEAAVD---DDTAAVVVQYPNFFGVIE- 220 (447)
T ss_pred ------cCCCEEEEeCccCHHHHHHHHHHHHhCCcEEEEecCCCC-CCCHHHHHHhcC---CCeEEEEEECCCCCCeeC-
Confidence 257899999999988877654 47999999999887 999999999997 889999999999999998
Q ss_pred CHHHHHHHHHHcCCEEEE--EccccccccCCCCCCccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccc
Q 001989 748 GIDEICKIIHDNGGQVYM--DGANMNAQVGLTSPGYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVV 825 (985)
Q Consensus 748 di~eI~~la~~~galliV--D~a~~~~~~~l~~pg~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g 825 (985)
|+++|+++||++|++++| |.. +.+.+..++++++|++++++|| |++|+.+||||+|++++++++.+.+++.++|
T Consensus 221 ~l~~I~~~a~~~~~~~iv~~d~~---~~g~~~~~~~~~~D~~~~s~~k-~~~~~~~~Gpg~G~l~~~~~~~~~~~~~~~g 296 (447)
T PRK00451 221 DLEEIAEIAHAGGALFIVGVDPV---SLGLLKPPGEYGADIVVGEGQP-LGIPLSFGGPYLGFFATRKKLVRQMPGRLVG 296 (447)
T ss_pred CHHHHHHHHHHCCCEEEEEcChH---HhccCCCcccCCCCEEEECCCc-CCCCCCCCCCCchHHHhhHHHHhhCCCCEee
Confidence 899999999999999998 533 3455556789999999999887 7899999999999999999888888777666
Q ss_pred cCCCC-CC-------------CCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc--c
Q 001989 826 STGGI-PA-------------PEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK--H 889 (985)
Q Consensus 826 ~~~~~-~~-------------~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~--g 889 (985)
++.+. .+ .++++++.++++. ......++++++..++.+|++++.++..++++++.++|++ +
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~aaa~~l~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~g 373 (447)
T PRK00451 297 ETVDADGKRGFVLTLQAREQHIRREKATSNICTN---QALNALAAAIYMSLLGPEGLRELAEQNHQKAHYLAERLAEIGG 373 (447)
T ss_pred eecccCCCeeeEeecccccccccccccccccccc---HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 53211 00 1233445555532 1222234555777889999999999999999999999986 3
Q ss_pred CCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCC---CCC-CCCEEEEeccCCCCHHHHHHHHccC
Q 001989 890 YPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTM---SWP-VPGTLMIEPTESESKSWTGIVMLSS 965 (985)
Q Consensus 890 ~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~---~~p-~~~~lris~t~~~t~eeId~~~~~~ 965 (985)
+++. . +..++.++++++ .+..+++++|.++|+.++.. .+| ..+.+|+|+++++|++|||+ +++
T Consensus 374 ~~~~-~---~~~~~~~~v~~~-------~~~~~~~~~L~~~gi~~~~~~~~~~~~~~~~~rvs~~~~~t~e~i~~--l~~ 440 (447)
T PRK00451 374 VELF-D---GPFFNEFVVRLP-------KPAEEVNEALLEKGILGGYDLGRYYPELGNHLLVCVTEKRTKEDIDA--LVA 440 (447)
T ss_pred EEec-C---CCeEEEEEEecC-------CCHHHHHHHHHhcCCCCCcccccccCCcCCEEEEecCCCCCHHHHHH--HHH
Confidence 3332 2 234554556543 35789999999999885421 122 34799999999999999999 777
Q ss_pred ChhHHH
Q 001989 966 PSEKKL 971 (985)
Q Consensus 966 ~l~~~~ 971 (985)
.|++++
T Consensus 441 ~L~~~~ 446 (447)
T PRK00451 441 ALGEVL 446 (447)
T ss_pred HHHHHh
Confidence 777653
|
|
| >cd00613 GDC-P Glycine cleavage system P-protein, alpha- and beta-subunits | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-36 Score=345.96 Aligned_cols=375 Identities=44% Similarity=0.650 Sum_probs=300.7
Q ss_pred HHHHHHHHHHHhcCCCccc---eecCCCCCCCCCcHHHHHHHHhCCccccccCCChhhHhhhHHHHHHHHHHHHHHhcCC
Q 001989 150 ESQMIEHMQKLASMNKVYK---SFIGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGL 226 (985)
Q Consensus 150 e~e~~~~~~~l~~~n~~~~---~~lG~g~y~~~~p~~v~~~i~~~~~~~t~~~pyq~e~sqg~l~~i~e~q~~ia~L~g~ 226 (985)
|.||++|+++++++|.... ..+|.|..+|..|..+.+...+. ...+.|+||.+..++|..+...++++.+++++|+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~p~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~la~~~g~ 79 (398)
T cd00613 1 ETEVLRHLKRLASKNKALDQSMSFLGSGTYKHNPPAVIKRNILEN-EFYTAYTPYQPEISQGRLQALFELQTMLCELTGM 79 (398)
T ss_pred CHHHHHHHHHHHhcCcCcccCcccccccccCCcCcHHHHHHhccc-cCcccCCCCChhhhhhHHHHHHHHHHHHHHHHCC
Confidence 5699999999998887543 47888888888999986433333 3467889999999999999999999999999999
Q ss_pred CCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc--------hhhhc-cCCC
Q 001989 227 PMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL--------KDIDY-KSGD 297 (985)
Q Consensus 227 ~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~--------~~l~~-l~~~ 297 (985)
+..++.++.+++.++++++++.....++||+|++++..|+++...+....+..|++++.++. +++++ ++++
T Consensus 80 ~~~~v~~~~~g~~~~~~~~~~~~~~~~~gd~Vl~~~~~h~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~ 159 (398)
T cd00613 80 DVANASLQDEATAAAEAAGLAAIRAYHKRNKVLVPDSAHPTNPAVARTRGEPLGIEVVEVPSDEGGTVDLEALKEEVSEE 159 (398)
T ss_pred CccceeccCchHHHHHHHHHHHHhcccCCCEEEEcCccCcchHHHHHHhcccCCcEEEEeccCCCCCcCHHHHHHhcCCC
Confidence 87777788877766666655433331248999999999999999997765566788887754 34566 7889
Q ss_pred EeEEEEEcCCCCeeeccH-HHHHHHHHhCCcEEEEEecCcccc-CCCCCCcccceEEEecC-ccccccCCCCCCcEEEEE
Q 001989 298 VCGVLVQYPGTEGEVLDY-GDFIKNAHANGVKVVMATDLLALT-ILKPPGELGADIVVGSA-QRFGVPMGYGGPHAAFLA 374 (985)
Q Consensus 298 t~~V~v~~pn~~G~v~di-~~I~~~a~~~galliV~a~~~~lg-~l~~~~~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~ 374 (985)
|++|++++|+++|.+.|+ ++|+++||++|++++||. .++.+ .+..++++|+|++++++ |++ .|++.|||++||++
T Consensus 160 t~~viv~~~~~~G~~~~~l~~i~~la~~~g~~livD~-~~~~~~~~~~~~~~~~d~~~~s~~K~~-~p~g~Ggp~~g~l~ 237 (398)
T cd00613 160 VAALMVQYPNTLGVFEDLIKEIADIAHSAGALVYVDG-DNLNLTGLKPPGEYGADIVVGNLQKTG-VPHGGGGPGAGFFA 237 (398)
T ss_pred eEEEEEECCCCCceecchHHHHHHHHHhcCCEEEEEe-ccccccCCCChHHcCCCEEEeeccccC-CCCCCCCCceeEEE
Confidence 999999999989999985 999999999999999954 22322 34456889999999999 666 99999999999999
Q ss_pred EchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHH
Q 001989 375 TSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLA 454 (985)
Q Consensus 375 ~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a 454 (985)
+++++.+.+++..+||..+..+.+.|.+.+..+..+.||+++|+|+++..++....+...+..++.+|++++.++..+++
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~e~~~~~~~~~~~~~~~~a~~~l~~~~~~g~~~~~~~~~~~~ 317 (398)
T cd00613 238 VKKELVRFLPGRLVGVTKDAEGNRAFRLALQTREQHIRREKATSNICTGQALLALMAAMYIVYLGPEGLKEIAERAHLNA 317 (398)
T ss_pred EhhhhHhhCCCCeeccccccCCCcceEEecccchhhcccccccccceecHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence 99999999999888875433334457776666677889999999999988887777777778889999999999999999
Q ss_pred HHHHHHHhcCCCeEEcCCCCcceEEEecC---C--HHHHHHHHHHcCceeeee---cCCeEEEEeccCCCHHHHHHHHHH
Q 001989 455 GTFALGLKKLGTVEVQGLPFFDTVKVKCA---D--AHAIASAAYKIEMNLRVV---DSNTVTASFDETTTLEDVDKLFIV 526 (985)
Q Consensus 455 ~~l~~~L~~~g~~~~~~~~~~~~~~~~~~---~--~~~v~~~L~~~GI~~~~~---~~~~lris~t~~~t~edId~li~a 526 (985)
++++++|+++++..+...++...+.+..+ + +.++.++|.++||.+... ..+.+|+|++.+||+||||+++++
T Consensus 318 ~~l~~~L~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~L~~~gi~~~~~~~~~~~~lRis~~~~~t~edid~~~~~ 397 (398)
T cd00613 318 NYLAKRLKEVGGVLPFNGPFFHEFVLRLPPLYGIRAEDLAKALIDGGFHAPTMYLPVDGTLMIEPTETETKEELDALLEA 397 (398)
T ss_pred HHHHHHHHhcCCcccCCCCeeEEEEEEcCCcchHHHHHHHHhhhhcCccccccccCCCCeEEEEcCCCCCHHHHHHHHHh
Confidence 99999999986333233344445566654 3 678999999999987653 357899999999999999999987
Q ss_pred H
Q 001989 527 F 527 (985)
Q Consensus 527 L 527 (985)
|
T Consensus 398 L 398 (398)
T cd00613 398 L 398 (398)
T ss_pred C
Confidence 5
|
This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalysed by this protein is: Glycine + lipoylprotein <= S-aminomethyldihydrolipoylprotein + CO2. Alpha-beta-type dimers associate to form an alpha(2)beta(2) tetramer, where the alpha- and beta-subunits are structurally similar and appear to have arisen by gene duplication and subsequent divergence with a loss of one active site. The members of this CD are widely dispersed among all three forms of cellular life. |
| >KOG2040 consensus Glycine dehydrogenase (decarboxylating) [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-35 Score=329.03 Aligned_cols=394 Identities=21% Similarity=0.294 Sum_probs=316.9
Q ss_pred CCHHHHHHHHHHHhCCCCCCCCHHhhhhhhhccCCCCccCCCCCCCCccccCCCCHHHHHHHHHHHhccccCcccccccc
Q 001989 515 TTLEDVDKLFIVFAGGKSVPFTAASLAEEVETAIPSGLTRESPYLTHPVFNKYHTEHELLRYIHLLQSKELSLCHSMIPL 594 (985)
Q Consensus 515 ~t~edId~li~aL~~~~~~~~~~~~l~~~~~~~ip~~~~~~~~~~~~p~~~~~~se~e~~~~l~~l~~~~~~~~~~~~~l 594 (985)
-++.|..+.++.++-. ++++|.+ ..+|..+|.++++ .+| ++++|.|+++++..++++|..| .+.|..
T Consensus 59 p~~~dq~~ml~tlG~~-----dl~~l~~---~~VP~~Ir~~~~l-~~~---~~~~E~eml~~l~~ia~kNk~~-ksfIGm 125 (1001)
T KOG2040|consen 59 PSPTDQQQMLDTLGYK-----DLDELIE---KTVPKSIRLKRPL-KMD---KPLCESEMLQHLEDIASKNKIW-KSFIGM 125 (1001)
T ss_pred CCchHHHHHHHhcChh-----hHHHHHH---hhcchhhcccchh-cCC---CCcCHHHHHHHHHHHHhhhhHH-HHhhcc
Confidence 3567778888888876 6777764 5799999999985 666 7899999999999999999754 456777
Q ss_pred cccccCCCccccccccccccccc-cCCCCchhhhhhHHHHHHHHHHHHHHHhCCCcc--ceecCcHHHHHHHHHHHHHHH
Q 001989 595 GSCTMKLNATTEMMPVTWPSFAN-IHPFAPADQAQGYQEMFNNLGEWLCTITGFDSF--SLQPNAGAAGEYAGLMVIRAY 671 (985)
Q Consensus 595 G~~t~~~~~~~~~~~~~~~~f~~-~~p~~p~e~~~G~~~~~~e~~~~la~l~G~~~~--~~~~~sGa~a~~a~l~air~~ 671 (985)
|+..+.+++.........++|++ |+|||| |++||.++.+-.+|.++++++|.+.+ ++..-+++.|+ |..++.+.
T Consensus 126 GYyn~~vP~~I~RNilenp~W~TqYTPYQ~-EIsQGRLEsllNyQTmi~dlTGL~~aNASLLDEgTAaaE-Am~l~~~~- 202 (1001)
T KOG2040|consen 126 GYYNTHVPAVILRNILENPGWYTQYTPYQA-EISQGRLESLLNYQTMITDLTGLPMANASLLDEGTAAAE-AMALCNRI- 202 (1001)
T ss_pred ccccccCcHHHHHHhhhCCcceeccCCCch-hhhhhhHHHHhhhHHhhhhccCCcccchhhhccchhHHH-HHHHHHhh-
Confidence 88888888888887788899988 999999 99999999999999999999999874 56666555555 66665553
Q ss_pred HHhcCCCCCCEEEEcCCCCcccHHHH----HHCCcEEEEEcCCCCCCCCHHHHHHHHHhcCCCEEEEEEEcCCCcccccc
Q 001989 672 HKARGDHHRNVCIIPVSAHGTNPATA----AMCGMKIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEE 747 (985)
Q Consensus 672 ~~~~g~~~~~~IIv~~~~Hg~~~~~a----~~~G~~vv~v~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~pn~~G~i~~ 747 (985)
.++.++++....|+-..... ...|++++..+ +++...- .+++..|.+++|++.|.+.
T Consensus 203 ------~krkk~vvd~~~hpqtlsV~~TRa~~~~i~v~~~~--------~~~~~~s----~~~v~gvlvQYP~t~G~i~- 263 (1001)
T KOG2040|consen 203 ------NKRKKFVVDSNCHPQTLSVVKTRAKGFGIKVVVSD--------IKEADYS----SKDVSGVLVQYPDTEGSVL- 263 (1001)
T ss_pred ------cccceEEecCCCCcchhhhhhccccccceeEEecC--------HHHhhcc----ccceeEEEEEcCCCCCccc-
Confidence 35667999888776555543 24555654333 3322211 2578999999999999998
Q ss_pred CHHHHHHHHHHcCCEEEEEccccccccCCCCCCccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccC
Q 001989 748 GIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVST 827 (985)
Q Consensus 748 di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~ 827 (985)
|..++.+.+|+.|.++++ ++...++..+..|+++|+||+++|+ +-|++|+|+|||+.||+++++++.+.+||+++|.+
T Consensus 264 d~~el~~~a~~~~s~vv~-atDLLaLtiLrpPgefGaDIavGSs-QRFGVPlGYGGPHAaFfAv~~~l~R~mPGRiiGvt 341 (1001)
T KOG2040|consen 264 DFDELVELAHANGSLVVM-ATDLLALTILRPPGEFGADIAVGSS-QRFGVPLGYGGPHAAFFAVSESLVRMMPGRIIGVT 341 (1001)
T ss_pred CHHHHHHHhhccCceEEE-eehhhHHHccCChhhcCceeeeccc-cccCccccCCCchHHHHHHHHHHHhhCCCceEeee
Confidence 899999999999999887 6777788888899999999999988 56999999999999999999999999999999987
Q ss_pred CCC-------------CCC-CCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCe
Q 001989 828 GGI-------------PAP-EKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPI 892 (985)
Q Consensus 828 ~~~-------------~~~-~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l 892 (985)
.|. ++| +|+++|+|||++ +++.+..+..|--+.|++|++++++++...+.+|...|+. +.++
T Consensus 342 kD~~gk~a~RLALQTREQHIrRDKATSNICTA---QALLANmaAmyaiYHGp~gL~~IArrvh~~T~~l~~~l~~aghel 418 (1001)
T KOG2040|consen 342 KDALGKEAYRLALQTREQHIRRDKATSNICTA---QALLANMAAMYAIYHGPHGLKEIARRVHNLTLILAEGLKNAGHEL 418 (1001)
T ss_pred ecccccHHHHHHHHHHHHHhhhhccchhhhHH---HHHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHHHHHHHhhcchhh
Confidence 664 122 478999999975 7777777778888999999999999999999999999986 6665
Q ss_pred eecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCCCCCCCEEEEeccCCCCHHHHHHHH
Q 001989 893 LFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKSWTGIVM 962 (985)
Q Consensus 893 ~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~~p~~~~lris~t~~~t~eeId~~~ 962 (985)
.. ..+|..+-+.+. .+.+++.++-.+++|...... .+++-+++.|..+++|+|.++
T Consensus 419 ~~----k~fFDTLkI~~~-------~s~~~~l~rA~~~~iNlr~~e---d~tigvslDETv~~~DvddLl 474 (1001)
T KOG2040|consen 419 QH----KPFFDTLKIRCG-------CSAEEVLDRAAKRQINLRLVE---DGTIGVSLDETVTEKDVDDLL 474 (1001)
T ss_pred cc----ccccceEEEEec-------CcHHHHHHHHHhhcCceEEee---cCceEEeecccccHHHHHHHH
Confidence 42 245655666653 368888888888887664433 589999999999999999943
|
|
| >cd00613 GDC-P Glycine cleavage system P-protein, alpha- and beta-subunits | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-33 Score=325.87 Aligned_cols=373 Identities=43% Similarity=0.642 Sum_probs=274.9
Q ss_pred HHHHHHHHHHHhccccCcccccccccccccCCCcccccccccc--ccccccCCCCchhhhhhHHHHHHHHHHHHHHHhCC
Q 001989 570 EHELLRYIHLLQSKELSLCHSMIPLGSCTMKLNATTEMMPVTW--PSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGF 647 (985)
Q Consensus 570 e~e~~~~l~~l~~~~~~~~~~~~~lG~~t~~~~~~~~~~~~~~--~~f~~~~p~~p~e~~~G~~~~~~e~~~~la~l~G~ 647 (985)
|+||++++.++++++...+.+++.||.|.+.++.......+.. .....|+|+.+ ..+.|..++.+++++++++++|.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~la~~~g~ 79 (398)
T cd00613 1 ETEVLRHLKRLASKNKALDQSMSFLGSGTYKHNPPAVIKRNILENEFYTAYTPYQP-EISQGRLQALFELQTMLCELTGM 79 (398)
T ss_pred CHHHHHHHHHHHhcCcCcccCcccccccccCCcCcHHHHHHhccccCcccCCCCCh-hhhhhHHHHHHHHHHHHHHHHCC
Confidence 5799999999999998888788889888877766544332111 12223666665 56789999999999999999998
Q ss_pred Cc--cceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCC----cEEEEEcCCCCCCCCHHHHH
Q 001989 648 DS--FSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCG----MKIVSVGTDAKGNINIEELR 721 (985)
Q Consensus 648 ~~--~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G----~~vv~v~~d~~g~iD~e~L~ 721 (985)
+. ..+..++|++++ .++++++. .+ .++++|++++.+|+++...+...| ++++.+|+++++.+|+++|+
T Consensus 80 ~~~~v~~~~~g~~~~~-~~~~~~~~---~~--~~gd~Vl~~~~~h~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~ 153 (398)
T cd00613 80 DVANASLQDEATAAAE-AAGLAAIR---AY--HKRNKVLVPDSAHPTNPAVARTRGEPLGIEVVEVPSDEGGTVDLEALK 153 (398)
T ss_pred CccceeccCchHHHHH-HHHHHHHh---cc--cCCCEEEEcCccCcchHHHHHHhcccCCcEEEEeccCCCCCcCHHHHH
Confidence 74 334444444444 44333321 11 147899999999999988776666 99999999777889999999
Q ss_pred HHHHhcCCCEEEEEEEcCCCccccccC-HHHHHHHHHHcCCEEEEEccccccccCCCCCCccCCcEEEeCCcccccccCC
Q 001989 722 KAAEANRDNLSTLMVTYPSTHGVYEEG-IDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIGADVCHLNLHKTFCIPHG 800 (985)
Q Consensus 722 ~~i~~~~~~t~~Vvv~~pn~~G~i~~d-i~eI~~la~~~galliVD~a~~~~~~~l~~pg~~g~Di~~~s~hK~l~~p~g 800 (985)
++++ ++|++|++++|+++|.+. | +++|+++|+++|+++++|++|..+. +..+++.+++|++++++|||+ +|+|
T Consensus 154 ~~i~---~~t~~viv~~~~~~G~~~-~~l~~i~~la~~~g~~livD~~~~~~~-~~~~~~~~~~d~~~~s~~K~~-~p~g 227 (398)
T cd00613 154 EEVS---EEVAALMVQYPNTLGVFE-DLIKEIADIAHSAGALVYVDGDNLNLT-GLKPPGEYGADIVVGNLQKTG-VPHG 227 (398)
T ss_pred HhcC---CCeEEEEEECCCCCceec-chHHHHHHHHHhcCCEEEEEecccccc-CCCChHHcCCCEEEeeccccC-CCCC
Confidence 9997 789999999998889997 6 5999999999999999999885444 445678889999999999999 9999
Q ss_pred CCCCceEEEEEcccccCcCCCCccccCCCC---------C-----CCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHH
Q 001989 801 GGGPGMGPIGVKKHLAPFLPSHPVVSTGGI---------P-----APEKSQPLGTIAAAPWGSALILPISYTYIAMMGSK 866 (985)
Q Consensus 801 ~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~---------~-----~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~e 866 (985)
+|||++|++++++++.+.+++...++..+. . ..+++.++.++.+ +....++++++++..++.+
T Consensus 228 ~Ggp~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~e~~~~~~~~---~~~~~~~~a~~~l~~~~~~ 304 (398)
T cd00613 228 GGGPGAGFFAVKKELVRFLPGRLVGVTKDAEGNRAFRLALQTREQHIRREKATSNICT---GQALLALMAAMYIVYLGPE 304 (398)
T ss_pred CCCCceeEEEEhhhhHhhCCCCeeccccccCCCcceEEecccchhhccccccccccee---cHHHHHHHHHHHHHHhCHH
Confidence 999999999999887776655433322100 0 0012334444332 3555667778888889999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCCCCCCCEE
Q 001989 867 GLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTL 945 (985)
Q Consensus 867 Gl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~~p~~~~l 945 (985)
|+.++.++..+++++++++|++ +..... .+...+.+.+.++.. .+.+..+++++|.++||++.....+..+.+
T Consensus 305 g~~~~~~~~~~~~~~l~~~L~~~~~~~~~---~~~~~~~v~~~~~~~---~~~~~~~~~~~L~~~gi~~~~~~~~~~~~l 378 (398)
T cd00613 305 GLKEIAERAHLNANYLAKRLKEVGGVLPF---NGPFFHEFVLRLPPL---YGIRAEDLAKALIDGGFHAPTMYLPVDGTL 378 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCcccC---CCCeeEEEEEEcCCc---chHHHHHHHHhhhhcCccccccccCCCCeE
Confidence 9999999999999999999987 322211 123444455555410 023567899999999998765432235899
Q ss_pred EEeccCCCCHHHHHHHHccCC
Q 001989 946 MIEPTESESKSWTGIVMLSSP 966 (985)
Q Consensus 946 ris~t~~~t~eeId~~~~~~~ 966 (985)
|++|+.++|+||||+ +++.
T Consensus 379 Ris~~~~~t~edid~--~~~~ 397 (398)
T cd00613 379 MIEPTETETKEELDA--LLEA 397 (398)
T ss_pred EEEcCCCCCHHHHHH--HHHh
Confidence 999999999999999 4443
|
This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalysed by this protein is: Glycine + lipoylprotein <= S-aminomethyldihydrolipoylprotein + CO2. Alpha-beta-type dimers associate to form an alpha(2)beta(2) tetramer, where the alpha- and beta-subunits are structurally similar and appear to have arisen by gene duplication and subsequent divergence with a loss of one active site. The members of this CD are widely dispersed among all three forms of cellular life. |
| >COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-33 Score=318.99 Aligned_cols=360 Identities=19% Similarity=0.160 Sum_probs=275.6
Q ss_pred HHHHHHHHHHhcCC---CccceecCCCCCCCCCcHHHHHHHHhCC-ccccccCCChhhHhhhHHHHHHHHHHHHHHhcCC
Q 001989 151 SQMIEHMQKLASMN---KVYKSFIGMGYYNTHVPPVILRNIMENP-AWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGL 226 (985)
Q Consensus 151 ~e~~~~~~~l~~~n---~~~~~~lG~g~y~~~~p~~v~~~i~~~~-~~~t~~~pyq~e~sqg~l~~i~e~q~~ia~L~g~ 226 (985)
..+++.+..+.+.- ..|.+.-+.+ ..|..+.+++..-. .++...+......++...+.+.++|+.+|+++|+
T Consensus 6 ~~~r~~fp~l~~~~~~~~vylD~aa~~----~~p~~V~~a~~~~~~~~~an~~r~~~~~~~~~t~~~e~aRe~va~~~~a 81 (405)
T COG0520 6 AAVRADFPALKREVGKPLVYLDNAATS----QKPQAVLDAVAEYYRRYNANVHRGAHTLAEEATDLYEAAREAVARFLNA 81 (405)
T ss_pred HHHHhhCHHHhhccCCCeEEecCcccc----cCCHHHHHHHHHHHHhhcCCcCcccchHHHHHHHHHHHHHHHHHHHhCC
Confidence 34777777776542 2232222222 37888876655311 1222224344457778888999999999999999
Q ss_pred CC-cceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc--------hhhhc-cCC
Q 001989 227 PM-SNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL--------KDIDY-KSG 296 (985)
Q Consensus 227 ~~-~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~--------~~l~~-l~~ 296 (985)
++ .++.++.|+|.++..+..++....++||+||+++.+|++++.+|+.+++..|++++++++ ++++. +++
T Consensus 82 ~~~~eIvft~~tT~aln~va~~l~~~~~~gdeIv~s~~EH~sn~~pw~~~~~~~Ga~v~~i~~~~~g~~~~~~~~~~i~~ 161 (405)
T COG0520 82 DSSDEIVFTRGTTEALNLVARGLGRSLKPGDEIVVSDLEHHSNIVPWQELAKRTGAKVRVIPLDDDGLLDLDALEKLITP 161 (405)
T ss_pred CCCCeEEEeCChhHHHHHHHHHhhhhhcCCCEEEEccCcchhhHHHHHHHHHhcCcEEEEEecCCCCCcCHHHHHHhcCC
Confidence 95 889999999977666555443112478999999999999999999999888999999875 34555 789
Q ss_pred CEeEEEEEc-CCCCeeeccHHHHHHHHHhCCcEEEEEecCccccCC-CCCCcccceEEEecC-ccccccCCCCCCcEEEE
Q 001989 297 DVCGVLVQY-PGTEGEVLDYGDFIKNAHANGVKVVMATDLLALTIL-KPPGELGADIVVGSA-QRFGVPMGYGGPHAAFL 373 (985)
Q Consensus 297 ~t~~V~v~~-pn~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l-~~~~~~GaDi~v~s~-k~lg~P~~~GGP~~G~l 373 (985)
+|++|.+++ +|.+|.+.|+++|+++||++|++++||+ .++.|.+ .+..++|+|++++|+ |+|++|. |+|+|
T Consensus 162 ~Tklvais~vSn~tG~~~pv~~I~~la~~~ga~v~VDa-aq~~~h~~idv~~l~~Df~afsgHKwl~gP~-----GiGvL 235 (405)
T COG0520 162 KTKLVALSHVSNVTGTVNPVKEIAELAHEHGALVLVDA-AQAAGHLPIDVQELGCDFLAFSGHKWLLGPT-----GIGVL 235 (405)
T ss_pred CceEEEEECccccccccchHHHHHHHHHHcCCEEEEEC-ccccCccCCCchhcCCCEEEEcccccccCCC-----ceEEE
Confidence 999999997 6999999999999999999999999943 3355543 356899999999999 5575542 68999
Q ss_pred EEchhhHhcCCCceeeee-ecCCCC-cceeeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcchHHHHHHHHH
Q 001989 374 ATSQEYKRMMPGRIVGVS-IDSSGK-PALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVH 451 (985)
Q Consensus 374 ~~~~~~~~~lp~~~vG~t-~d~~g~-~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~ 451 (985)
|+++++++.|+|...|+. .+.... ..+. ..+...|.|.||+|+ .+.+++.+++ .++...|++++.++.+
T Consensus 236 y~r~~~l~~l~P~~~gg~~~~~~~~~~~~~----~~~~p~rfe~gTpn~---~~~i~l~aAl--~~~~~ig~~~i~~~e~ 306 (405)
T COG0520 236 YVRKELLEELEPFLGGGGMIEYVSRDEGVT----LAELPLRFEAGTPNI---AGAIGLAAAL--DYLLEIGMEAIEAHER 306 (405)
T ss_pred EEchHHHhhcCCcccCCCceeeeccccccc----ccCcchhhccCCchH---HHHHhHHHHH--HHHHHHhHHHHHHHHH
Confidence 999999999988888852 221111 1111 134567789999999 4666777776 6777788999999999
Q ss_pred HHHHHHHHHHhcCCCeEEcCCC---CcceEEEecCC--HHHHHHHHHHcCceeeee------------cCCeEEEEeccC
Q 001989 452 GLAGTFALGLKKLGTVEVQGLP---FFDTVKVKCAD--AHAIASAAYKIEMNLRVV------------DSNTVTASFDET 514 (985)
Q Consensus 452 ~~a~~l~~~L~~~g~~~~~~~~---~~~~~~~~~~~--~~~v~~~L~~~GI~~~~~------------~~~~lris~t~~ 514 (985)
++++|+.++|+++.++++++.+ ....++|++++ +.++++.|.++||.++.- ..+.+|+|++.|
T Consensus 307 ~L~~~~~~~L~~~~~v~i~g~~~~~r~~~vsF~v~~~~~~dv~~~L~~~gI~vr~g~~ca~p~~~~~~~~~~iR~S~~~Y 386 (405)
T COG0520 307 ELTEYLLEGLSELPGVEIYGPPDADRGGIVSFNVKGIHPHDVATLLDEKGIAVRAGHHCAQPLHRLLGVDATIRASLHLY 386 (405)
T ss_pred HHHHHHHHHHhcCCCeEEecCCcccCceEEEEEeCCCCHHHHHHHHHhCCeEEEeccccccHHHHhcCCCCceEEEEeec
Confidence 9999999999999669998643 45678888887 999999999999987542 134599999999
Q ss_pred CCHHHHHHHHHHHhC
Q 001989 515 TTLEDVDKLFIVFAG 529 (985)
Q Consensus 515 ~t~edId~li~aL~~ 529 (985)
||+||||+|+++|+.
T Consensus 387 Nt~edid~l~~aL~~ 401 (405)
T COG0520 387 NTEEDVDRLLEALKK 401 (405)
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999999975
|
|
| >COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.1e-30 Score=285.40 Aligned_cols=349 Identities=17% Similarity=0.210 Sum_probs=248.9
Q ss_pred ccccc-ccccCCCcc--ccccccccccccccCCCCchhhhhhHHHHHHHHHHHHHHHhCCCccceecCcHHHHHHHHHHH
Q 001989 591 MIPLG-SCTMKLNAT--TEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMV 667 (985)
Q Consensus 591 ~~~lG-~~t~~~~~~--~~~~~~~~~~f~~~~p~~p~e~~~G~~~~~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~a 667 (985)
|+||. +.|+++.+. ..+++.....|.| |......-.-.++++++.++.+++++|+++..++++||++ |+.+++
T Consensus 2 miYlD~~ATTp~~~~v~~~m~~~~~~~fgN--PsS~H~~G~~A~~~ve~AR~~iA~llga~~~eIiFTSG~T--EsnNla 77 (386)
T COG1104 2 MIYLDNAATTPVDPEVLEAMLPYLTEVFGN--PSSLHSFGREARKAVEEAREQIAKLLGADPEEIIFTSGAT--ESNNLA 77 (386)
T ss_pred cccccccccCCCCHHHHHHHHHHHHhhcCC--ccchhHhHHHHHHHHHHHHHHHHHHhCCCCCeEEEecCCc--HHHHHH
Confidence 67888 466666654 3444444445655 2221122345788999999999999999987666655543 355666
Q ss_pred HHHHHH-hcCCCCCCEEEEcCCCCcccHHHHH---HCCcEEEEEcCCCCCCCCHHHHHHHHHhcCCCEEEEEEEcCC-Cc
Q 001989 668 IRAYHK-ARGDHHRNVCIIPVSAHGTNPATAA---MCGMKIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPS-TH 742 (985)
Q Consensus 668 ir~~~~-~~g~~~~~~IIv~~~~Hg~~~~~a~---~~G~~vv~v~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~pn-~~ 742 (985)
++.... .+...++.+||++...|.+....++ ..|++|.++|+|.+|.+|+++|+++|+ ++|.+|.+.+.| .+
T Consensus 78 I~g~~~a~~~~~~~~HIIts~iEH~aVl~~~~~Le~~g~~Vtyl~V~~~G~v~~e~L~~al~---~~T~LVSim~aNnE~ 154 (386)
T COG1104 78 IKGAALAYRNAQKGKHIITSAIEHPAVLNTCRYLERQGFEVTYLPVDSNGLVDLEQLEEALR---PDTILVSIMHANNET 154 (386)
T ss_pred HHhhHHhhhcccCCCeEEEcccccHHHHHHHHHHHhcCCeEEEeCCCCCCeEcHHHHHHhcC---CCceEEEEEecccCe
Confidence 665211 1111256789999998876655544 469999999999999999999999998 899999999985 79
Q ss_pred cccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCccCCcEEEeCCcccccccCCCCCC-ceEEEEEccccc--CcC
Q 001989 743 GVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIGADVCHLNLHKTFCIPHGGGGP-GMGPIGVKKHLA--PFL 819 (985)
Q Consensus 743 G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~g~Di~~~s~hK~l~~p~g~GGP-g~G~i~~~~~l~--~~l 819 (985)
|+++ ||++|+++|+++|++||||++|.++...+ ++..+++|++++|+||. +|| |+|++++++... +.+
T Consensus 155 G~IQ-pI~ei~~i~k~~~i~fHvDAvQa~Gkipi-~~~~~~vD~ls~SaHK~-------~GpkGiGaLyv~~~~~~~p~i 225 (386)
T COG1104 155 GTIQ-PIAEIGEICKERGILFHVDAVQAVGKIPI-DLEELGVDLLSFSAHKF-------GGPKGIGALYVRPGVRLEPLI 225 (386)
T ss_pred eecc-cHHHHHHHHHHcCCeEEEehhhhcCceec-cccccCcceEEeehhhc-------cCCCceEEEEECCCCccCcee
Confidence 9999 89999999999999999999998766654 56777899999999996 466 999999976432 333
Q ss_pred CCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCC
Q 001989 820 PSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVN 898 (985)
Q Consensus 820 p~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~ 898 (985)
. |+. + .+++..+|.|+++ .++...++ .+..+.+.....+....+++|.++|.+ ...+...+..
T Consensus 226 ~----GGg-Q--E~g~RsGTenv~~----Ivg~~~A~-----~~a~~~~~~~~~~~~~lr~~l~~~l~~~~p~~~~~g~~ 289 (386)
T COG1104 226 H----GGG-Q--ERGLRSGTENVPG----IVGFGKAA-----EIAVEELEEENARLRKLRDRLEDGLLEIIPDVYLNGDD 289 (386)
T ss_pred c----cCc-C--CCCCCCCCccHHH----HHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEcCCc
Confidence 2 221 1 1122345555542 32222211 122344555566777888889999986 3555554432
Q ss_pred -CceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCC---CCC----C-------------CCCEEEEeccCCCCHHH
Q 001989 899 -GTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPT---MSW----P-------------VPGTLMIEPTESESKSW 957 (985)
Q Consensus 899 -~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~---~~~----p-------------~~~~lris~t~~~t~ee 957 (985)
....|.+.+.|+ +++++.+.-.|..+||.+++ |+. | ..+.||||++..+|+||
T Consensus 290 ~~rlP~~~~~~f~------gv~gE~ll~~L~~~gI~vStGSACsS~~~~pShVL~AmG~~~e~a~~siR~S~g~~tt~ee 363 (386)
T COG1104 290 EPRLPNILNFSFP------GVEGESLLLALDLAGIAVSTGSACSSGSLEPSHVLRAMGISEELAHGSIRFSLGRFTTEEE 363 (386)
T ss_pred ccCCCCeEEEEeC------CCcHHHHHHhccccCeEEeccccccCCCCCccHHHHHcCCChHHhCccEEEEcCCCCCHHH
Confidence 234456677876 68899999999999999864 321 2 13889999999999999
Q ss_pred HHHHHccCChhHHHHhhccCCc
Q 001989 958 TGIVMLSSPSEKKLHRLKMGRQ 979 (985)
Q Consensus 958 Id~~~~~~~l~~~~~~~~~~~~ 979 (985)
||+ +++.+++++++++...+
T Consensus 364 i~~--~~~~l~~~i~~lr~~~~ 383 (386)
T COG1104 364 IDA--AAEALKEIIKRLRELSP 383 (386)
T ss_pred HHH--HHHHHHHHHHHHhhhcc
Confidence 999 88999999999987443
|
|
| >COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2e-29 Score=288.62 Aligned_cols=367 Identities=18% Similarity=0.190 Sum_probs=252.9
Q ss_pred HHHHHHHHHHhccccCcccccccccc-cccCCCcc-ccccc-cccccccccCCCCchhhhhhHHHHHHHHHHHHHHHhCC
Q 001989 571 HELLRYIHLLQSKELSLCHSMIPLGS-CTMKLNAT-TEMMP-VTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGF 647 (985)
Q Consensus 571 ~e~~~~l~~l~~~~~~~~~~~~~lG~-~t~~~~~~-~~~~~-~~~~~f~~~~p~~p~e~~~G~~~~~~e~~~~la~l~G~ 647 (985)
..++..+..+.+.. ....++|.+ ++...+.. .+.+. .....+.|.|.... ...+...+.+++.++.+++++|.
T Consensus 6 ~~~r~~fp~l~~~~---~~~~vylD~aa~~~~p~~V~~a~~~~~~~~~an~~r~~~-~~~~~~t~~~e~aRe~va~~~~a 81 (405)
T COG0520 6 AAVRADFPALKREV---GKPLVYLDNAATSQKPQAVLDAVAEYYRRYNANVHRGAH-TLAEEATDLYEAAREAVARFLNA 81 (405)
T ss_pred HHHHhhCHHHhhcc---CCCeEEecCcccccCCHHHHHHHHHHHHhhcCCcCcccc-hHHHHHHHHHHHHHHHHHHHhCC
Confidence 34666666666543 233567764 32222221 11111 11112333342222 34566778899999999999999
Q ss_pred Cc-cceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHH----HHHCCcEEEEEcCCCCCCCCHHHHHH
Q 001989 648 DS-FSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPAT----AAMCGMKIVSVGTDAKGNINIEELRK 722 (985)
Q Consensus 648 ~~-~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~----a~~~G~~vv~v~~d~~g~iD~e~L~~ 722 (985)
+. ..+.++.|++ ++..+.++.+... ..++|+||+++..|.+|... ++..|++++++|++++|.+|+|++++
T Consensus 82 ~~~~eIvft~~tT--~aln~va~~l~~~--~~~gdeIv~s~~EH~sn~~pw~~~~~~~Ga~v~~i~~~~~g~~~~~~~~~ 157 (405)
T COG0520 82 DSSDEIVFTRGTT--EALNLVARGLGRS--LKPGDEIVVSDLEHHSNIVPWQELAKRTGAKVRVIPLDDDGLLDLDALEK 157 (405)
T ss_pred CCCCeEEEeCChh--HHHHHHHHHhhhh--hcCCCEEEEccCcchhhHHHHHHHHHhcCcEEEEEecCCCCCcCHHHHHH
Confidence 85 5555544443 1334444444211 24679999999999888544 45679999999999889999999999
Q ss_pred HHHhcCCCEEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCccCCcEEEeCCcccccccCCC
Q 001989 723 AAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIGADVCHLNLHKTFCIPHGG 801 (985)
Q Consensus 723 ~i~~~~~~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~g~Di~~~s~hK~l~~p~g~ 801 (985)
+++ ++|++|.+++. |.+|++. |+++|+++||++|++++||++|..++..+ +..++|+|++++|+||||
T Consensus 158 ~i~---~~Tklvais~vSn~tG~~~-pv~~I~~la~~~ga~v~VDaaq~~~h~~i-dv~~l~~Df~afsgHKwl------ 226 (405)
T COG0520 158 LIT---PKTKLVALSHVSNVTGTVN-PVKEIAELAHEHGALVLVDAAQAAGHLPI-DVQELGCDFLAFSGHKWL------ 226 (405)
T ss_pred hcC---CCceEEEEECccccccccc-hHHHHHHHHHHcCCEEEEECccccCccCC-CchhcCCCEEEEcccccc------
Confidence 998 89999999996 6799999 89999999999999999999998766654 667899999999999998
Q ss_pred CCC-ceEEEEEcccccCcCCCCccccC-CC---C--------CCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHHH
Q 001989 802 GGP-GMGPIGVKKHLAPFLPSHPVVST-GG---I--------PAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGL 868 (985)
Q Consensus 802 GGP-g~G~i~~~~~l~~~lp~~~~g~~-~~---~--------~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl 868 (985)
+|| |+|++++++++.+.+++...|+. .+ . ..++.+.+|.++.. ...+.+|..++. ..|+
T Consensus 227 ~gP~GiGvLy~r~~~l~~l~P~~~gg~~~~~~~~~~~~~~~~~p~rfe~gTpn~~~-----~i~l~aAl~~~~---~ig~ 298 (405)
T COG0520 227 LGPTGIGVLYVRKELLEELEPFLGGGGMIEYVSRDEGVTLAELPLRFEAGTPNIAG-----AIGLAAALDYLL---EIGM 298 (405)
T ss_pred cCCCceEEEEEchHHHhhcCCcccCCCceeeecccccccccCcchhhccCCchHHH-----HHhHHHHHHHHH---HHhH
Confidence 467 99999999998888755544431 10 0 11233555555542 222333444444 4556
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCeeecCCCC-ceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCC---CCCC----
Q 001989 869 TEASKIAILNANYMAKRLEKHYPILFRGVNG-TVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPT---MSWP---- 940 (985)
Q Consensus 869 ~~~~~~~~~~a~~l~~~L~~g~~l~~~~~~~-~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~---~~~p---- 940 (985)
.++.++..++++|+.++|++...+...++.. .....+.+.++ ++++.++++.|.++||.+.. +..|
T Consensus 299 ~~i~~~e~~L~~~~~~~L~~~~~v~i~g~~~~~r~~~vsF~v~------~~~~~dv~~~L~~~gI~vr~g~~ca~p~~~~ 372 (405)
T COG0520 299 EAIEAHERELTEYLLEGLSELPGVEIYGPPDADRGGIVSFNVK------GIHPHDVATLLDEKGIAVRAGHHCAQPLHRL 372 (405)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCeEEecCCcccCceEEEEEeC------CCCHHHHHHHHHhCCeEEEeccccccHHHHh
Confidence 6777788999999999999854443333321 22333455554 67899999999999987653 2223
Q ss_pred --CCCEEEEeccCCCCHHHHHHHHccCChhHHHH
Q 001989 941 --VPGTLMIEPTESESKSWTGIVMLSSPSEKKLH 972 (985)
Q Consensus 941 --~~~~lris~t~~~t~eeId~~~~~~~l~~~~~ 972 (985)
+.+.+|+|+..+||+||||+ +++.|+++.+
T Consensus 373 ~~~~~~iR~S~~~YNt~edid~--l~~aL~~~~~ 404 (405)
T COG0520 373 LGVDATIRASLHLYNTEEDVDR--LLEALKKALA 404 (405)
T ss_pred cCCCCceEEEEeecCCHHHHHH--HHHHHHHHhh
Confidence 34669999999999999999 7788877653
|
|
| >PRK09295 bifunctional cysteine desulfurase/selenocysteine lyase; Validated | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.7e-27 Score=275.38 Aligned_cols=359 Identities=16% Similarity=0.105 Sum_probs=257.4
Q ss_pred HHHHHHHHHHhcC----CCccceecCCCCCCCCCcHHHHHHHHhCCcccccc--CCC--hhhHhhhHHHHHHHHHHHHHH
Q 001989 151 SQMIEHMQKLASM----NKVYKSFIGMGYYNTHVPPVILRNIMENPAWYTQY--TPY--QAEIAQGRLESLLNFQTMIAD 222 (985)
Q Consensus 151 ~e~~~~~~~l~~~----n~~~~~~lG~g~y~~~~p~~v~~~i~~~~~~~t~~--~py--q~e~sqg~l~~i~e~q~~ia~ 222 (985)
..++.++..+... ...|.++-+.+. .|..+.+.+.. |+..+ .|. ....++-..+.+.++++.+|+
T Consensus 6 ~~~r~~fp~~~~~~~~~~~iYld~a~~~~----~~~~v~~a~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~ 78 (406)
T PRK09295 6 EKVRADFPVLSREVNGLPLAYLDSAASAQ----KPSQVIDAEAE---FYRHGYAAVHRGIHTLSAQATEKMENVRKQAAL 78 (406)
T ss_pred HHHHhhCccccCcCCCCceEEEeCccccc----CCHHHHHHHHH---HHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHH
Confidence 3455666655321 134555555553 55555444332 22211 121 223445567888899999999
Q ss_pred hcCC-CCcceeeccchHHHHHHHHHHhhh-hcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc--------hhhh
Q 001989 223 LTGL-PMSNASLLDEGTAAAEAMAMCNNI-QKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL--------KDID 292 (985)
Q Consensus 223 L~g~-~~~~~sl~~~~ta~~ea~~~a~~~-~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~--------~~l~ 292 (985)
++|. ++.++.+++|+|.++..++.++.. ..++||+||+++.+|++....|..+++..|++++.++. ++++
T Consensus 79 ~~~~~~~~~v~~t~g~t~~l~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~ 158 (406)
T PRK09295 79 FINARSAEELVFVRGTTEGINLVANSWGNSNVRAGDNIIISEMEHHANIVPWQMLCARVGAELRVIPLNPDGTLQLETLP 158 (406)
T ss_pred HcCcCCCCeEEEeCCHHHHHHHHHHHhhhhcCCCcCEEEECcchhhHHHHHHHHHHHHcCcEEEEEecCCCCCCCHHHHH
Confidence 9998 567899999999877765544311 12378999999999999998888877778999988753 4566
Q ss_pred c-cCCCEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCC-CCCcccceEEEecCccccccCCCCCCc
Q 001989 293 Y-KSGDVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILK-PPGELGADIVVGSAQRFGVPMGYGGPH 369 (985)
Q Consensus 293 ~-l~~~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~-~~~~~GaDi~v~s~k~lg~P~~~GGP~ 369 (985)
+ ++++|++|++++| |.+|.+.|+++|+++||++|++++||+ .+++|... +..++|+|++++|++|+.+| +|
T Consensus 159 ~~i~~~t~lv~l~~~~n~tG~~~~~~~i~~~~~~~~~~vivD~-a~~~g~~~~~~~~~~~D~~~~s~~K~~gp-----~G 232 (406)
T PRK09295 159 ALFDERTRLLAITHVSNVLGTENPLAEMIALAHQHGAKVLVDG-AQAVMHHPVDVQALDCDFYVFSGHKLYGP-----TG 232 (406)
T ss_pred HhcCCCcEEEEEecchhcccccCCHHHHHHHHHHcCCEEEEEc-ccccCccccCchhcCCCEEEeehhhccCC-----CC
Confidence 6 7788999999997 789999999999999999999999953 34555432 34678999999999556434 45
Q ss_pred EEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcchHHHHHHH
Q 001989 370 AAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQR 449 (985)
Q Consensus 370 ~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~ 449 (985)
+|++++++++++.+|+...|++.......... ...++...|++.||+|+ .++.++.+++ .++...|++++.++
T Consensus 233 ~G~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~--~~~~~~~~r~e~GT~~~---~~~~~l~~al--~~~~~~g~~~i~~~ 305 (406)
T PRK09295 233 IGILYVKEALLQEMPPWEGGGSMIATVSLTEG--TTWAKAPWRFEAGTPNT---GGIIGLGAAL--DYVSALGLNNIAEY 305 (406)
T ss_pred cEEEEEchHhHhhCCCcccCCceeeeeecCCc--cccCCchhhcCCCCccH---HHHHHHHHHH--HHHHHhCHHHHHHH
Confidence 89999999998889876655432100000000 11123345778999998 4666777776 55556689999999
Q ss_pred HHHHHHHHHHHHhcCCCeEEcCC-CCcceEEEecCC--HHHHHHHHHHcCceeeee------------cCCeEEEEeccC
Q 001989 450 VHGLAGTFALGLKKLGTVEVQGL-PFFDTVKVKCAD--AHAIASAAYKIEMNLRVV------------DSNTVTASFDET 514 (985)
Q Consensus 450 ~~~~a~~l~~~L~~~g~~~~~~~-~~~~~~~~~~~~--~~~v~~~L~~~GI~~~~~------------~~~~lris~t~~ 514 (985)
+.+++++++++|+++.+++++.+ .....++|..++ +.++.+.|.++||.++.- .++.+|+|++.+
T Consensus 306 ~~~l~~~l~~~l~~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~L~~~gI~v~~g~~c~~~~~~~~~~~~~iRiS~~~y 385 (406)
T PRK09295 306 EQNLMHYALSQLESVPDLTLYGPQNRLGVIAFNLGKHHAYDVGSFLDNYGIAVRTGHHCAMPLMAYYNVPAMCRASLAMY 385 (406)
T ss_pred HHHHHHHHHHHHhcCCCEEEeCCCCCceEEEEEECCcCHHHHHHHHHhCCeEEeccccchHHHHHHHCCCCEEEEEccCC
Confidence 99999999999999844988753 234567777765 788999999999987531 136799999999
Q ss_pred CCHHHHHHHHHHHhC
Q 001989 515 TTLEDVDKLFIVFAG 529 (985)
Q Consensus 515 ~t~edId~li~aL~~ 529 (985)
||++|||+|+++|++
T Consensus 386 nt~~did~l~~~l~~ 400 (406)
T PRK09295 386 NTHEEVDRLVAGLQR 400 (406)
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999999974
|
|
| >PRK13520 L-tyrosine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-26 Score=266.89 Aligned_cols=356 Identities=17% Similarity=0.188 Sum_probs=244.4
Q ss_pred CCCHHHHHHHHHHHhccccCcccccccccc-cccCCCccccccccccccccccCCCCchhhhhhHHHHHHHHHHHHHHHh
Q 001989 567 YHTEHELLRYIHLLQSKELSLCHSMIPLGS-CTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTIT 645 (985)
Q Consensus 567 ~~se~e~~~~l~~l~~~~~~~~~~~~~lG~-~t~~~~~~~~~~~~~~~~f~~~~p~~p~e~~~G~~~~~~e~~~~la~l~ 645 (985)
+++|+|++++|+.+.++|..+.+ +||+ +|+..+...+.+...... ++..+ ...++..++++++++++++++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~a~~~~~~~----~~~~~-~~~~~~~~~~~~~~~~la~~~ 72 (371)
T PRK13520 1 GLSEEEILEELEEYRSEDLKYER---ILSSMCTEPHPIARKAHEMFLET----NLGDP-GLFPGTAKLEEEAVEMLGELL 72 (371)
T ss_pred CCCHHHHHHHHHHHHhcCCCHHH---eeeeeecCchHHHHHHHHHHHhc----CCCCc-ccCccHHHHHHHHHHHHHHHh
Confidence 46899999999999999988763 4897 655554433322211111 11111 113467778889999999999
Q ss_pred CCCcc-ceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcCCCCCCCCHHHHHHHH
Q 001989 646 GFDSF-SLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKGNINIEELRKAA 724 (985)
Q Consensus 646 G~~~~-~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~d~~g~iD~e~L~~~i 724 (985)
|++.. .++.++|+++++.++.+++.. ...++++||+++..|.++...++..|++++.+|.++++.+|+++|+++|
T Consensus 73 g~~~~~~~~~~ggt~a~~~a~~~~~~~----~~~~~~~vl~~~~~h~s~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i 148 (371)
T PRK13520 73 HLPDAYGYITSGGTEANIQAVRAARNL----AKAEKPNIVVPESAHFSFDKAADMLGVELRRAPLDDDYRVDVKAVEDLI 148 (371)
T ss_pred CCCCCCeEEecCcHHHHHHHHHHHHhh----ccCCCceEEecCcchHHHHHHHHHcCceEEEecCCCCCcCCHHHHHHHH
Confidence 98764 355567777765554444321 1124678999998888877777888999999999888999999999999
Q ss_pred HhcCCCEEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCCC------CCCccCCcEEEeCCcccccc
Q 001989 725 EANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLT------SPGYIGADVCHLNLHKTFCI 797 (985)
Q Consensus 725 ~~~~~~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~------~pg~~g~Di~~~s~hK~l~~ 797 (985)
+ +++++|++.++ |.+|.+. |+++|+++|+++|+++|||++|..+..++. .....++|.+++++|||...
T Consensus 149 ~---~~~~~vi~~~~~~~tG~~~-~l~~I~~l~~~~g~~livD~a~~~~~~~~~~~~~~~~~~~~~vd~~~~s~~K~~~a 224 (371)
T PRK13520 149 D---DNTIGIVGIAGTTELGQVD-PIPELSKIALENGIFLHVDAAFGGFVIPFLDDPPNFDFSLPGVDSITIDPHKMGLA 224 (371)
T ss_pred h---hCCEEEEEEcCCcCCcccC-CHHHHHHHHHHcCCCEEEEecchhHHHHhhcCCCCccccCCCCceEEECCccccCc
Confidence 8 67877777776 4699998 899999999999999999999853221111 11235789999999997642
Q ss_pred cCCCCCCceEEEEE-cccccCcCC---CCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHHHHHHHH
Q 001989 798 PHGGGGPGMGPIGV-KKHLAPFLP---SHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASK 873 (985)
Q Consensus 798 p~g~GGPg~G~i~~-~~~l~~~lp---~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl~~~~~ 873 (985)
|.++|++++ ++++.+.+. +...+. ...... +++.+ ..+.++++.+..++.+|+++..+
T Consensus 225 -----~~~~G~~~~~~~~~~~~l~~~~~~~~~~--------~~~~~~---gt~~~--~~~~~~~~al~~l~~~g~~~~~~ 286 (371)
T PRK13520 225 -----PIPAGGILFRDESYLDALAVDTPYLTSK--------KQATLT---GTRSG--AGVAATYAVMKYLGREGYRKVVE 286 (371)
T ss_pred -----cCCceEEEEcCHHHHHhhcccCccccCC--------CCcceE---eeccC--hHHHHHHHHHhhhcHhHHHHHHH
Confidence 224454554 444544432 111110 000000 01111 22445677888888999988899
Q ss_pred HHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCCCCCCCEEEEeccCC
Q 001989 874 IAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTES 952 (985)
Q Consensus 874 ~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~~p~~~~lris~t~~ 952 (985)
+..++++++.++|++ ++++.+ .+ ..+.+.+.++ +..++.++|.++||.+..+.. ++.+||+++.+
T Consensus 287 ~~~~~~~~l~~~L~~~g~~~~~-~~---~~~~v~~~~~--------~~~~v~~~L~~~gi~v~~~~~--~~~iRis~~~~ 352 (371)
T PRK13520 287 RCMENTRWLAEELKERGFEPVI-EP---VLNIVAFDDP--------NPDEVREKLRERGWRVSVTRC--PEALRIVCMPH 352 (371)
T ss_pred HHHHHHHHHHHHHHhCCCEEec-CC---CceEEEEecC--------CHHHHHHHHHHCCceeccCCC--CCEEEEEEECC
Confidence 999999999999987 555332 21 2233444432 578999999999999876543 36899999999
Q ss_pred CCHHHHHHHHccCChhHHHH
Q 001989 953 ESKSWTGIVMLSSPSEKKLH 972 (985)
Q Consensus 953 ~t~eeId~~~~~~~l~~~~~ 972 (985)
+|++|||+ +++.|++++.
T Consensus 353 ~t~edi~~--~~~~l~~~~~ 370 (371)
T PRK13520 353 VTREHIEN--FLEDLKEVKK 370 (371)
T ss_pred CCHHHHHH--HHHHHHHHhh
Confidence 99999999 7788877654
|
|
| >PRK10874 cysteine sulfinate desulfinase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.3e-26 Score=264.21 Aligned_cols=359 Identities=16% Similarity=0.110 Sum_probs=256.1
Q ss_pred CCHHHHHHHHHHHhcCCCccceecCCCCCCCCCcHHHHHHHHhCCcccccc----CCChhhHhhhHHHHHHHHHHHHHHh
Q 001989 148 LTESQMIEHMQKLASMNKVYKSFIGMGYYNTHVPPVILRNIMENPAWYTQY----TPYQAEIAQGRLESLLNFQTMIADL 223 (985)
Q Consensus 148 ~se~e~~~~~~~l~~~n~~~~~~lG~g~y~~~~p~~v~~~i~~~~~~~t~~----~pyq~e~sqg~l~~i~e~q~~ia~L 223 (985)
++-.++++++..+. .+..|.+.-+.|. .|..+.+.+.. |+..+ +.......+.+.+.+.++++.+|++
T Consensus 4 ~~~~~~r~~fp~l~-~~~~yld~a~~~~----~~~~v~~a~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~ 75 (401)
T PRK10874 4 FNPAQFRAQFPALQ-DAGVYLDSAATAL----KPQAVIEATQQ---FYSLSAGNVHRSQFAAAQRLTARYEAAREQVAQL 75 (401)
T ss_pred CCHHHHHHhCCCcC-CceEEEeCCcccC----CCHHHHHHHHH---HHHhccCCCCCcccHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666542 3445655555553 55555433321 22211 1122234566778899999999999
Q ss_pred cCC-CCcceeeccchHHHHHHHHHHhhh-hcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc--------hhhhc
Q 001989 224 TGL-PMSNASLLDEGTAAAEAMAMCNNI-QKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL--------KDIDY 293 (985)
Q Consensus 224 ~g~-~~~~~sl~~~~ta~~ea~~~a~~~-~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~--------~~l~~ 293 (985)
+|+ ++.++.+++|+|.++..++.++.. ..++||+||+++.+|++....|+.+++..|++++.++. +++++
T Consensus 76 ~g~~~~~~i~~~~~~t~~i~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~ 155 (401)
T PRK10874 76 LNAPDAKNIVWTRGTTESINLVAQSYARPRLQPGDEIIVSEAEHHANLVPWLMVAQQTGAKVVKLPLGADRLPDVDLLPE 155 (401)
T ss_pred cCCCCCCEEEEECCHHHHHHHHHHHhhhccCCCcCEEEECCcchHHHHHHHHHHHHHhCCEEEEEecCCCCcCCHHHHHH
Confidence 999 677899999999888777655421 12388999999999999988888777778999988754 34555
Q ss_pred -cCCCEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCC-CCCCcccceEEEecCccccccCCCCCCcE
Q 001989 294 -KSGDVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTIL-KPPGELGADIVVGSAQRFGVPMGYGGPHA 370 (985)
Q Consensus 294 -l~~~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l-~~~~~~GaDi~v~s~k~lg~P~~~GGP~~ 370 (985)
++++|++|++++| |.+|.+.|+++|+++||++|++++||. ..++|.. .+..++|+|++++|++|+.+| ||+
T Consensus 156 ~i~~~t~lv~i~~~~n~tG~~~~~~~i~~l~~~~g~~~ivD~-a~~~g~~~~~~~~~~~d~~~~s~~K~~gp-----~G~ 229 (401)
T PRK10874 156 LITPRTRILALGQMSNVTGGCPDLARAITLAHQAGMVVMVDG-AQGAVHFPADVQALDIDFYAFSGHKLYGP-----TGI 229 (401)
T ss_pred hcCcCcEEEEEeCCcccccCcCCHHHHHHHHHHcCCEEEEEC-CcccccccCCchhcCCCEEEEecccccCC-----Ccc
Confidence 7889999999987 789999999999999999999999953 3444433 234678999999998445333 468
Q ss_pred EEEEEchhhHhcCCCceeeeee-cCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcchHHHHHHH
Q 001989 371 AFLATSQEYKRMMPGRIVGVSI-DSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQR 449 (985)
Q Consensus 371 G~l~~~~~~~~~lp~~~vG~t~-d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~ 449 (985)
|++++++++++.+++...|.+. +. . .|. ....++...|.+.||.|+ ....++.+++ .++...|++++.++
T Consensus 230 G~l~~~~~~~~~~~~~~~~~~~~~~--~-~~~-~~~~~~~~~~~e~Gt~~~---~~~~al~~al--~~l~~~g~~~~~~~ 300 (401)
T PRK10874 230 GVLYGKSELLEAMSPWQGGGKMLTE--V-SFD-GFTPQSAPWRFEAGTPNV---AGVIGLSAAL--EWLADIDINQAESW 300 (401)
T ss_pred EEEEEchHHHhcCCCeecCCcceEe--e-ccC-ccCCCCChhhccCCCcCH---HHHHHHHHHH--HHHHHhCHHHHHHH
Confidence 9999999999888765433211 10 0 010 111123345667899998 5566667776 55556788889999
Q ss_pred HHHHHHHHHHHHhcCCCeEEcCCCCcceEEEecCC--HHHHHHHHHHcCceeeee------------cCCeEEEEeccCC
Q 001989 450 VHGLAGTFALGLKKLGTVEVQGLPFFDTVKVKCAD--AHAIASAAYKIEMNLRVV------------DSNTVTASFDETT 515 (985)
Q Consensus 450 ~~~~a~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~--~~~v~~~L~~~GI~~~~~------------~~~~lris~t~~~ 515 (985)
+.+++++++++|+++.|++++..+....+.|.+++ +.++.+.|.++||.++.. ..+.+|+|++.+|
T Consensus 301 ~~~l~~~l~~~l~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~L~~~gI~v~~g~~~~~~~~~~~g~~~~iRiS~~~~n 380 (401)
T PRK10874 301 SRSLATLAEDALAKLPGFRSFRCQDSSLLAFDFAGVHHSDLVTLLAEYGIALRAGQHCAQPLLAALGVTGTLRASFAPYN 380 (401)
T ss_pred HHHHHHHHHHHHhcCCCEEEeCCCCCcEEEEEECCcCHHHHHHHHHHCCcEEeccccchHHHHHHhCCCCEEEEEecccC
Confidence 99999999999999833887754333345566655 788999999999987541 1478999999999
Q ss_pred CHHHHHHHHHHHhC
Q 001989 516 TLEDVDKLFIVFAG 529 (985)
Q Consensus 516 t~edId~li~aL~~ 529 (985)
|++|||+|+++|.+
T Consensus 381 t~edid~ll~al~~ 394 (401)
T PRK10874 381 TQSDVDALVNAVDR 394 (401)
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999999974
|
|
| >PF00266 Aminotran_5: Aminotransferase class-V; InterPro: IPR000192 Aminotransferases share certain mechanistic features with other pyridoxal- phosphate dependent enzymes, such as the covalent binding of the pyridoxal- phosphate group to a lysine residue | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.4e-27 Score=269.04 Aligned_cols=327 Identities=21% Similarity=0.202 Sum_probs=244.4
Q ss_pred CCcHHHHHHHHhCCcccccc--CC--ChhhHhhhHHHHHHHHHHHHHHhcCCCC-cceeeccchHHHHHHHHHHhhhhcC
Q 001989 179 HVPPVILRNIMENPAWYTQY--TP--YQAEIAQGRLESLLNFQTMIADLTGLPM-SNASLLDEGTAAAEAMAMCNNIQKG 253 (985)
Q Consensus 179 ~~p~~v~~~i~~~~~~~t~~--~p--yq~e~sqg~l~~i~e~q~~ia~L~g~~~-~~~sl~~~~ta~~ea~~~a~~~~~~ 253 (985)
.+|..+.+++... +..+ +| .....+....+.+.++++.+++++|+++ .++.+.+++|.+++.++.++....+
T Consensus 10 ~~p~~v~~a~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~lg~~~~~~v~~~~~~t~a~~~~~~~l~~~~~ 86 (371)
T PF00266_consen 10 PMPKSVLEAISDY---LRNFYANPHSGVSHRSREFAEILEEAREALAKLLGAPPDEEVVFTSNGTEALNAVASSLLNPLK 86 (371)
T ss_dssp B-BHHHHHHHHHH---HHHSGSSTSTSSSTTSHHHHHHHHHHHHHHHHHHTSSTTEEEEEESSHHHHHHHHHHHHHHHGT
T ss_pred CCCHHHHHHHHHH---HHHhhhcCcccccchhhhhhHHHHHHHHHHHHhcCCccccccccccccchhhhhhhhccccccc
Confidence 4888887665532 1111 33 1223456677889999999999999998 8888999999888888776632124
Q ss_pred CCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc--------hhhhc-cCCCEeEEEEEcC-CCCeeeccHHHHHHHHH
Q 001989 254 KKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL--------KDIDY-KSGDVCGVLVQYP-GTEGEVLDYGDFIKNAH 323 (985)
Q Consensus 254 ~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~--------~~l~~-l~~~t~~V~v~~p-n~~G~v~di~~I~~~a~ 323 (985)
+|++|+++..+|++...+|...++..|+++++++. +++++ +++++++|++++. |.+|.+.|+++|+++||
T Consensus 87 ~g~~vl~~~~~~~s~~~~~~~~~~~~g~~v~~i~~~~~~~~~~~~~~~~l~~~~~lv~~~~~~~~tG~~~pi~~I~~~~~ 166 (371)
T PF00266_consen 87 PGDEVLVTSNEHPSNRYPWEEIAKRKGAEVRVIPADPGGSLDLEDLEEALNPDTRLVSISHVENSTGVRNPIEEIAKLAH 166 (371)
T ss_dssp TTCEEEEEESSHHHHHHHHHHHHHHTTEEEEEEEEGTTSSCSHHHHHHHHHTTESEEEEESBETTTTBBSSHHHHHHHHH
T ss_pred cccccccccccccccccccccccccchhhhccccccccchhhhhhhhhhhccccceEEeecccccccEEeeeceehhhhh
Confidence 88999999999999999998887778999988854 34556 7899999999875 78999999999999999
Q ss_pred hCCcEEEEEecCccccCC-CCCCcccceEEEecCccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceee
Q 001989 324 ANGVKVVMATDLLALTIL-KPPGELGADIVVGSAQRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRV 402 (985)
Q Consensus 324 ~~galliV~a~~~~lg~l-~~~~~~GaDi~v~s~k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l 402 (985)
++|++++||+ .+++|.+ .+..++|+|++++++|||+ |+||+|++++++++.+++.+...|+..- .. ..+
T Consensus 167 ~~~~~~~vD~-~~~~g~~~id~~~~~~D~~~~s~~Kl~-----gp~G~g~l~v~~~~~~~~~p~~~~~~~~---~~-~~~ 236 (371)
T PF00266_consen 167 EYGALLVVDA-AQSAGCVPIDLDELGADFLVFSSHKLG-----GPPGLGFLYVRPEAIERLRPAKPGGGYL---DF-PSL 236 (371)
T ss_dssp HTTSEEEEE--TTTTTTSS--TTTTTESEEEEESTSTT-----SSSTEEEEEEEHHHHHHHHTSSSSSSTT---TH-HHH
T ss_pred ccCCceeEec-hhccccccccccccccceeeecccccC-----CCCchhhheehhhhhhcccccccccccc---cc-ccc
Confidence 9999999954 4566655 3557899999999995585 4467999999999998886666665210 00 000
Q ss_pred e-cccccccccccccCCCccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCC----CCcce
Q 001989 403 A-MQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGL----PFFDT 477 (985)
Q Consensus 403 ~-l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~----~~~~~ 477 (985)
. ........|++.||.|+ ..++++..++ .++...|++++.++..++++++++.|+++++++++++ .....
T Consensus 237 ~~~~~~~~~~~~~~GT~~~---~~~~~l~~al--~~~~~~g~~~i~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~i 311 (371)
T PF00266_consen 237 QEYGLADDARRFEGGTPNV---PAIYALNEAL--KLLEEIGIERIRERIRELAEYLREALEELPGIEVLGPDDEPRRPSI 311 (371)
T ss_dssp HHHCHHSTTTGSSSSS--H---HHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTEEESSSSCGGBGTTE
T ss_pred hhcccccccccccccceee---ehhhhHHHHH--hhhhccccccchhhhhhHHHHHHhhhhcCCceeEeeecccccccce
Confidence 0 00122344567789888 4555666665 5556779999999999999999999999976888642 12345
Q ss_pred EEEecCC--HHHHHHHHHHcCceeeee------------cCCeEEEEeccCCCHHHHHHH
Q 001989 478 VKVKCAD--AHAIASAAYKIEMNLRVV------------DSNTVTASFDETTTLEDVDKL 523 (985)
Q Consensus 478 ~~~~~~~--~~~v~~~L~~~GI~~~~~------------~~~~lris~t~~~t~edId~l 523 (985)
++|..++ +.++.+.|.++||.++.- ..+.+|+|++.+||+||||+|
T Consensus 312 ~~~~~~~~~~~~~~~~L~~~~I~~~~G~~~~~~~~~~~~~~~~iRvS~~~~nt~~dv~~l 371 (371)
T PF00266_consen 312 VSFNLPGSDADDVVKYLEERGIAVSTGSACAGPSLDILGMGGVIRVSLHYYNTEEDVDRL 371 (371)
T ss_dssp EEEEETTSSHHHHHHHHHHHTEEEEESTTTCHHHHHHHHTTTEEEEE-GTTSSHHHHHHH
T ss_pred EEEeecCCCHHHHHHHHhhcCEEEeccCcccHHHHHHhCCCCEEEEeccCCCCHHHHhhC
Confidence 7777666 899999999999987641 138999999999999999986
|
On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. This entry represents the class V aminotransferases and the related, though functionally distinct, cysteine desulfurases.; GO: 0008152 metabolic process; PDB: 3FFR_A 1N2T_B 1ELQ_A 1N31_A 1ELU_B 1QZ9_A 1VJO_A 3ISL_B 1BJO_B 1BJN_B .... |
| >TIGR03392 FeS_syn_CsdA cysteine desulfurase, catalytic subunit CsdA | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.9e-26 Score=264.20 Aligned_cols=356 Identities=18% Similarity=0.126 Sum_probs=252.0
Q ss_pred HHHHHHHHHHhcCCCccceecCCCCCCCCCcHHHHHHHHhCCcccccc--CC--ChhhHhhhHHHHHHHHHHHHHHhcCC
Q 001989 151 SQMIEHMQKLASMNKVYKSFIGMGYYNTHVPPVILRNIMENPAWYTQY--TP--YQAEIAQGRLESLLNFQTMIADLTGL 226 (985)
Q Consensus 151 ~e~~~~~~~l~~~n~~~~~~lG~g~y~~~~p~~v~~~i~~~~~~~t~~--~p--yq~e~sqg~l~~i~e~q~~ia~L~g~ 226 (985)
.+++.++..+. .+..|.+.-+.|. .|..+.+++.. |+..+ .| ......+-..+.+.++++.+|+++|+
T Consensus 4 ~~~r~~fp~l~-~~~iyld~a~~~~----~p~~v~~a~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~ 75 (398)
T TIGR03392 4 AQFRQQFPALQ-DGTVYLDSAATAL----KPQAVIDATQQ---FYRLSSGTVHRSQHQQAQSLTARYELARQQVARFLNA 75 (398)
T ss_pred hHHHHhCCccC-CCeEEeeCccccC----CCHHHHHHHHH---HHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhCC
Confidence 34555555432 2345655555553 55666544332 22111 12 11123444567788999999999999
Q ss_pred C-CcceeeccchHHHHHHHHHHhhh-hcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc--------hhhhc-cC
Q 001989 227 P-MSNASLLDEGTAAAEAMAMCNNI-QKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL--------KDIDY-KS 295 (985)
Q Consensus 227 ~-~~~~sl~~~~ta~~ea~~~a~~~-~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~--------~~l~~-l~ 295 (985)
+ +.++.+++|+|.++..++.++.. ..++||+||+++..|++....+...++..|++++.++. +++++ ++
T Consensus 76 ~~~~~i~~t~g~t~~l~~~~~~~~~~~~~~gd~Vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~~l~~~i~ 155 (398)
T TIGR03392 76 PDAENIVWTRGTTESINLVAQSYARPRLQPGDEIIVSEAEHHANLIPWLMVAQQTGAKVVKLPIGADLLPDIRQLPELLT 155 (398)
T ss_pred CCCCeEEEeCChHHHHHHHHHHhhhccCCCCCEEEECCcchhHHHHHHHHHHHHcCcEEEEEecCCCCCcCHHHHHHHhc
Confidence 5 67898999999887776655421 12378999999999999888887767778999988754 34555 78
Q ss_pred CCEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCC-CCCcccceEEEecCccccccCCCCCCcEEEE
Q 001989 296 GDVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILK-PPGELGADIVVGSAQRFGVPMGYGGPHAAFL 373 (985)
Q Consensus 296 ~~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~-~~~~~GaDi~v~s~k~lg~P~~~GGP~~G~l 373 (985)
++|++|++++| |.+|.+.|+++|+++||++|++++||+ ..+++... +..++++|++++|++|+.+| +|+|++
T Consensus 156 ~~t~lv~i~~~~n~tG~~~~~~~i~~~~~~~~~~~ivD~-a~~~~~~~~~~~~~~~d~~~~s~~K~~gp-----~G~G~l 229 (398)
T TIGR03392 156 PRTRILALGQMSNVTGGCPDLARAITLAHQYGAVVVVDG-AQGVVHGPPDVQALDIDFYAFSGHKLYGP-----TGIGVL 229 (398)
T ss_pred cCceEEEEECccccccccCCHHHHHHHHHHcCCEEEEEh-hhhcCCCCCChhhcCCCEEEEecccccCC-----CceEEE
Confidence 88999999987 789999999999999999999999953 33444332 33568999999999445333 458999
Q ss_pred EEchhhHhcCCCceeeeee-cCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcchHHHHHHHHHH
Q 001989 374 ATSQEYKRMMPGRIVGVSI-DSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHG 452 (985)
Q Consensus 374 ~~~~~~~~~lp~~~vG~t~-d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~ 452 (985)
++++++++.+++...|... +..... ....++.+.|++.||+|+ .+..++.+++ .++...|++++.+++.+
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~e~GT~~~---~~~~a~~~al--~~l~~~g~~~i~~~~~~ 300 (398)
T TIGR03392 230 YGKTELLEAMPPWQGGGKMLSHVSFD----GFIPQAVPHRFEAGTPNI---AGVIGLSAAL--EWLTDIDIAAAEAWSVS 300 (398)
T ss_pred EEcHHHHhhCCCeecCCceEeecccc----ccccCCChhhccCCCCCH---HHHHHHHHHH--HHHHHhCHHHHHHHHHH
Confidence 9999999888765433221 100000 111233445678899998 5566667766 55556688899999999
Q ss_pred HHHHHHHHHhcCCCeEEcCCCCcceEEEecCC--HHHHHHHHHHcCceeeeec------------CCeEEEEeccCCCHH
Q 001989 453 LAGTFALGLKKLGTVEVQGLPFFDTVKVKCAD--AHAIASAAYKIEMNLRVVD------------SNTVTASFDETTTLE 518 (985)
Q Consensus 453 ~a~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~--~~~v~~~L~~~GI~~~~~~------------~~~lris~t~~~t~e 518 (985)
+++++++.|+++.++++...+....++|..++ +.++.+.|.++||.++... ++.+|+|++.+||++
T Consensus 301 l~~~l~~~l~~l~g~~~~~~~~~~i~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~g~~~~iRvS~~~~~t~~ 380 (398)
T TIGR03392 301 LADLAEERLAQLPGFRSFRCPGSSLLAFDFAGVHHSDLAALLAESGIALRAGQHCAQPLMAALGVSGTLRASFAPYNTQQ 380 (398)
T ss_pred HHHHHHHHHhcCCCeEEeCCCCCcEEEEEeCCcCHHHHHHHHHhCCEEEecCccchHHHHHHhCCCCEEEEEeeccCCHH
Confidence 99999999999844887744333356666655 7889999999999885321 468999999999999
Q ss_pred HHHHHHHHHhC
Q 001989 519 DVDKLFIVFAG 529 (985)
Q Consensus 519 dId~li~aL~~ 529 (985)
|||+|+++|+.
T Consensus 381 ei~~l~~~l~~ 391 (398)
T TIGR03392 381 DVDALVDAVGA 391 (398)
T ss_pred HHHHHHHHHHH
Confidence 99999999974
|
Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems. |
| >PLN02855 Bifunctional selenocysteine lyase/cysteine desulfurase | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.3e-26 Score=266.78 Aligned_cols=310 Identities=17% Similarity=0.124 Sum_probs=235.3
Q ss_pred hhhHHHHHHHHHHHHHHhcCCC-CcceeeccchHHHHHHHHHHhhh-hcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEE
Q 001989 206 AQGRLESLLNFQTMIADLTGLP-MSNASLLDEGTAAAEAMAMCNNI-QKGKKKTFIIASNCHPQTIDICITRADGFDIKV 283 (985)
Q Consensus 206 sqg~l~~i~e~q~~ia~L~g~~-~~~~sl~~~~ta~~ea~~~a~~~-~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v 283 (985)
+.-..+.+.++++.+|+++|++ +.++.++.|+|.++..++.++.. ..++|++|+++..+|++....|+.+++..|+++
T Consensus 71 ~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~al~~i~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~a~~~g~~v 150 (424)
T PLN02855 71 SAKATDAYELARKKVAAFINASTSREIVFTRNATEAINLVAYTWGLANLKPGDEVILSVAEHHSNIVPWQLVAQKTGAVL 150 (424)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCEEEEeCCHHHHHHHHHHHhhhhcCCCcCEEEECCCccHHHHHHHHHHHHHcCCEE
Confidence 3445567889999999999996 46899999999877766544311 123789999999999999999988777789998
Q ss_pred EEeCc--------hhhhc-cCCCEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCC-CCCCcccceEE
Q 001989 284 VVSDL--------KDIDY-KSGDVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTIL-KPPGELGADIV 352 (985)
Q Consensus 284 ~~v~~--------~~l~~-l~~~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l-~~~~~~GaDi~ 352 (985)
+.++. +++++ ++++|++|+++++ |.+|.+.|+++|+++||++|++++||+ .++.|.. .+..++|+|++
T Consensus 151 ~~v~~~~~~~~~~~~l~~~i~~~t~lv~i~~~~n~tG~~~~~~~I~~l~~~~g~~vivD~-a~~~g~~~~~~~~~~~d~~ 229 (424)
T PLN02855 151 KFVGLTPDEVLDVEQLKELLSEKTKLVATHHVSNVLGSILPVEDIVHWAHAVGAKVLVDA-CQSVPHMPVDVQTLGADFL 229 (424)
T ss_pred EEEecCCCCCcCHHHHHHHhccCceEEEEeCccccccccCCHHHHHHHHHHcCCEEEEEh-hhhcCCcCCCchhcCCCEE
Confidence 88754 34556 7789999999987 789999999999999999999999953 3344433 23467899999
Q ss_pred EecCccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHH
Q 001989 353 VGSAQRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAA 432 (985)
Q Consensus 353 v~s~k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa 432 (985)
+++++|+.+| +|+|++++++++++++++.+.|++.... . |......++.+.|++.||+|+ .+..++.++
T Consensus 230 ~~s~~K~~gp-----~G~G~l~~~~~~~~~~~p~~~g~~~~~~--~-~~~~~~~~~~~~r~e~GT~~~---~~~~~l~~a 298 (424)
T PLN02855 230 VASSHKMCGP-----TGIGFLWGKSDLLESMPPFLGGGEMISD--V-FLDHSTYAPPPSRFEAGTPAI---GEAIGLGAA 298 (424)
T ss_pred EeecccccCC-----CccEEEEEchhhhhcCCCEecCCCceee--e-ecCccccCCChhhccCCChHH---HHHHHHHHH
Confidence 9999556433 4689999999999999887766532100 0 100000123345678899998 456666666
Q ss_pred HHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCC------CCcceEEEecCC--HHHHHHHHHHc-Cceeeee-
Q 001989 433 MYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGL------PFFDTVKVKCAD--AHAIASAAYKI-EMNLRVV- 502 (985)
Q Consensus 433 ~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~------~~~~~~~~~~~~--~~~v~~~L~~~-GI~~~~~- 502 (985)
+ .++...|++++.+++.+++++++++|+++.+++++.+ ...+.++|..++ +.++.+.|.++ ||.++.-
T Consensus 299 l--~~~~~~g~~~i~~~~~~l~~~l~~~L~~~~g~~i~~~~~~~~~~r~~~v~~~~~~~~~~~v~~~L~~~~gI~v~~g~ 376 (424)
T PLN02855 299 I--DYLSEIGMDRIHEYEVELGTYLYEKLSSVPGVRIYGPKPSEGVGRAALCAFNVEGIHPTDLSTFLDQQHGVAIRSGH 376 (424)
T ss_pred H--HHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCcccccCcccEEEEEECCcCHHHHHHHhcccCCEEEechh
Confidence 6 5666679999999999999999999999834998843 123467777765 78899999887 9987531
Q ss_pred -----------cCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 503 -----------DSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 503 -----------~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
.++.+|+|++.+||.+|||+|+++|++
T Consensus 377 ~c~~~~~~~~g~~~~iRiS~~~ynt~~di~~l~~~l~~ 414 (424)
T PLN02855 377 HCAQPLHRYLGVNASARASLYFYNTKEEVDAFIHALKD 414 (424)
T ss_pred hhhHHHHHHhCCCCeEEEEeccCCCHHHHHHHHHHHHH
Confidence 136799999999999999999999974
|
|
| >TIGR01788 Glu-decarb-GAD glutamate decarboxylase | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.3e-25 Score=253.89 Aligned_cols=379 Identities=15% Similarity=0.108 Sum_probs=256.2
Q ss_pred CCccccCCCCHHHHHHHHHHHhccccCcccccccccccccCCCcc-cccccccc-ccccccCCCCchhhhhhHHHHHHHH
Q 001989 560 THPVFNKYHTEHELLRYIHLLQSKELSLCHSMIPLGSCTMKLNAT-TEMMPVTW-PSFANIHPFAPADQAQGYQEMFNNL 637 (985)
Q Consensus 560 ~~p~~~~~~se~e~~~~l~~l~~~~~~~~~~~~~lG~~t~~~~~~-~~~~~~~~-~~f~~~~p~~p~e~~~G~~~~~~e~ 637 (985)
++| +++.+.+|+++.+...--.|... ...++|++|++..+. .+.+...+ ..+. +|. .+....++++++
T Consensus 16 ~~p--~~~~~~~~~~~~~~~~iyld~~a--~~~~~~~~tt~~~p~~~~~~~~~l~~~~~--np~----s~~~~~~le~~~ 85 (431)
T TIGR01788 16 RMP--EEEMPPDAAYQLIHDELSLDGNP--RLNLATFVTTWMEPEARKLMDETINKNMI--DKD----EYPQTAEIENRC 85 (431)
T ss_pred cCC--CCCCCHHHHHHHHHHHhhhcCCc--ceeeeeeeCCCCCHHHHHHHHHHHhcCCC--Ccc----cCccHHHHHHHH
Confidence 567 68899999999998765444322 356778887765543 22222111 1222 222 234455899999
Q ss_pred HHHHHHHhCCC-c--cc-ee-cCcHHHHHHHHHHHHHHHHHh----cCC-CCCCEEEEcCCCCcccHHHHHHCCcEEEEE
Q 001989 638 GEWLCTITGFD-S--FS-LQ-PNAGAAGEYAGLMVIRAYHKA----RGD-HHRNVCIIPVSAHGTNPATAAMCGMKIVSV 707 (985)
Q Consensus 638 ~~~la~l~G~~-~--~~-~~-~~sGa~a~~a~l~air~~~~~----~g~-~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v 707 (985)
++|+++++|++ . .. +. .++|++++..++.++|..... .|. ..+..|++++.+|.+..+.++..|++++.|
T Consensus 86 ~~~la~llg~~~~~~~~~g~~TsGgTEAn~~al~~ar~~~~~~~~~~g~~~~~~~ii~s~~~H~sv~ka~~~lg~~v~~i 165 (431)
T TIGR01788 86 VNMLADLWHAPAKDAEAVGTSTIGSSEAIMLGGLAMKWRWRKRMEAAGKPTDKPNLVMGSNVQVCWEKFARYFDVELREV 165 (431)
T ss_pred HHHHHHHhCCCCCCCCCeEEEechHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEcCcchHHHHHHHHHcCceeEEE
Confidence 99999999998 2 22 22 456666665555555432111 111 013479999999999888888899999999
Q ss_pred cCCCC-CCCCHHHHHHHHHhcCCCEEEEEEEcCC-CccccccCHHHHHHHHHHc------CCEEEEEccccccccCCC--
Q 001989 708 GTDAK-GNINIEELRKAAEANRDNLSTLMVTYPS-THGVYEEGIDEICKIIHDN------GGQVYMDGANMNAQVGLT-- 777 (985)
Q Consensus 708 ~~d~~-g~iD~e~L~~~i~~~~~~t~~Vvv~~pn-~~G~i~~di~eI~~la~~~------galliVD~a~~~~~~~l~-- 777 (985)
|+|++ +.+|+++|+++|+ ++|.+|+++..| .+|.++ ||++|+++|+++ |+++|||+||..+...+.
T Consensus 166 ~~d~~~~~vd~~~L~~~i~---~~t~lV~~t~g~t~tG~id-pi~~I~~i~~~~~~~~~~~~~~HvDaaq~g~~~p~~~~ 241 (431)
T TIGR01788 166 PMDPGRYVIDPEQVVEAVD---ENTIGVVCILGTTYTGEYE-DVKALNDALDEYNAKTGWDIPIHVDAASGGFIAPFVYP 241 (431)
T ss_pred ecCCCceeeCHHHHHHHHh---hCCeEEEEEeCCCCCcccC-CHHHHHHHHHHHHhhhCCCceEEEecccHHHHHHHhCC
Confidence 99876 5999999999998 789999999886 599999 899999999999 999999999852221110
Q ss_pred ----CCCccCCcEEEeCCcccccccCCCCCCceEEEEEccc--ccCcCCC--CccccCCCCCCCCCCCCCCCCCCcchhh
Q 001989 778 ----SPGYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKH--LAPFLPS--HPVVSTGGIPAPEKSQPLGTIAAAPWGS 849 (985)
Q Consensus 778 ----~pg~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~--l~~~lp~--~~~g~~~~~~~~~~~~~~~~i~s~~~g~ 849 (985)
+....++|.+++|+|||+. |.+|+|++++++. +.+.+.. .+.+... .. ..+..+..|
T Consensus 242 ~~~~~~~~~~~DSis~s~HK~~~-----~P~g~G~l~~r~~~~l~~~~~~~~~yl~~~~------~~---~t~~~sR~g- 306 (431)
T TIGR01788 242 DLEWDFRLPRVKSINVSGHKYGL-----VYPGVGWVIWRDEEALPEELIFHVNYLGGDE------PT---FTLNFSRPA- 306 (431)
T ss_pred CchhhcCCCCceEEEECchhccC-----CCCCcEEEEEeChHHcchhheecccccCCCC------CC---cceecCchH-
Confidence 1124578999999999963 3347899999864 3232210 0111100 00 011111111
Q ss_pred hHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc--cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHH
Q 001989 850 ALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK--HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRL 927 (985)
Q Consensus 850 ~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~--g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L 927 (985)
..++..|..|..+|.+|++++.++.+++++++.++|++ +++++.++ +..+.+.+.+++.. +.+.+..++.++|
T Consensus 307 -~~al~~w~~l~~lG~~G~~~i~~~~~~la~~l~~~L~~~~~~el~~~~---~~~~iV~Fr~~~~~-~~~~~~~~l~~~L 381 (431)
T TIGR01788 307 -NQVIAQYYNFLRLGREGYRKIMQNSLDVARYLAEEIAKLGPFEIISDG---SGIPLVAFKLKDDA-DPGYTLYDLSHRL 381 (431)
T ss_pred -HHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEeeCC---CCceEEEEEeCCCC-CCCcCHHHHHHHH
Confidence 12345799999999999999999999999999999986 35554321 23444556554210 1135678999999
Q ss_pred HHCCCccCCCCCC--CC--CEEEEeccCCCCHHHHHHHHccCChhHHHHhh
Q 001989 928 MDYGFHGPTMSWP--VP--GTLMIEPTESESKSWTGIVMLSSPSEKKLHRL 974 (985)
Q Consensus 928 ~~~Gi~~~~~~~p--~~--~~lris~t~~~t~eeId~~~~~~~l~~~~~~~ 974 (985)
.++||.+.....| +. -.+|+++....+++-+|+ |++.|++++..+
T Consensus 382 ~~~G~~~~~~~~p~~~~~~~~lR~~~~~~~~~~~~~~--~~~~~~~~~~~~ 430 (431)
T TIGR01788 382 RERGWIVPAYTLPKNAEDIVVMRIVVREGFSRDLAEL--LIEDIEAALAYL 430 (431)
T ss_pred HHCCCcccCCCCCCccCCeEEEEEEecCCCCHHHHHH--HHHHHHHHHHhh
Confidence 9999986543333 21 358999998999999999 888888888765
|
This model represents the pyridoxal phosphate-dependent glutamate (alpha) decarboxylase found in bacteria (low and hi-GC gram positive, proteobacteria and cyanobacteria), plants, fungi and at least one archaon (Methanosarcina). The product of the enzyme is gamma-aminobutyrate (GABA). |
| >COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.4e-25 Score=247.35 Aligned_cols=292 Identities=16% Similarity=0.162 Sum_probs=226.9
Q ss_pred hhHHHHHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHH--hhhh-cCCCCEEEEcCCCChhHHHHHHHhhcCCCeEE
Q 001989 207 QGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMC--NNIQ-KGKKKTFIIASNCHPQTIDICITRADGFDIKV 283 (985)
Q Consensus 207 qg~l~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a--~~~~-~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v 283 (985)
.-..+++.++++.+|+++|+++.++.+++|||.+...++.. .... +++|++||++..+||+++..++.+ +..|++|
T Consensus 40 ~~A~~~ve~AR~~iA~llga~~~eIiFTSG~TEsnNlaI~g~~~a~~~~~~~~HIIts~iEH~aVl~~~~~L-e~~g~~V 118 (386)
T COG1104 40 REARKAVEEAREQIAKLLGADPEEIIFTSGATESNNLAIKGAALAYRNAQKGKHIITSAIEHPAVLNTCRYL-ERQGFEV 118 (386)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCeEEEecCCcHHHHHHHHhhHHhhhcccCCCeEEEcccccHHHHHHHHHH-HhcCCeE
Confidence 34578999999999999999999999999999554444432 1111 236889999999999999999987 6789999
Q ss_pred EEeCc--------hhhhc-cCCCEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCC-CCCCcccceEE
Q 001989 284 VVSDL--------KDIDY-KSGDVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTIL-KPPGELGADIV 352 (985)
Q Consensus 284 ~~v~~--------~~l~~-l~~~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l-~~~~~~GaDi~ 352 (985)
.++++ ++|++ ++++|.+|.|.+. |.+|+++||++|+++||++|++|+||+ ..++|-+ .++.++|+|++
T Consensus 119 tyl~V~~~G~v~~e~L~~al~~~T~LVSim~aNnE~G~IQpI~ei~~i~k~~~i~fHvDA-vQa~Gkipi~~~~~~vD~l 197 (386)
T COG1104 119 TYLPVDSNGLVDLEQLEEALRPDTILVSIMHANNETGTIQPIAEIGEICKERGILFHVDA-VQAVGKIPIDLEELGVDLL 197 (386)
T ss_pred EEeCCCCCCeEcHHHHHHhcCCCceEEEEEecccCeeecccHHHHHHHHHHcCCeEEEeh-hhhcCceeccccccCcceE
Confidence 99876 46777 8999999999986 689999999999999999999999964 4577755 35678899999
Q ss_pred EecCccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHH
Q 001989 353 VGSAQRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAA 432 (985)
Q Consensus 353 v~s~k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa 432 (985)
..|+++|++|. |.|++|+++.. .+.+.+.|. .+ |. .+-.||.|+ .+..++..|
T Consensus 198 s~SaHK~~Gpk-----GiGaLyv~~~~--~~~p~i~GG------gQ---------E~--g~RsGTenv---~~Ivg~~~A 250 (386)
T COG1104 198 SFSAHKFGGPK-----GIGALYVRPGV--RLEPLIHGG------GQ---------ER--GLRSGTENV---PGIVGFGKA 250 (386)
T ss_pred EeehhhccCCC-----ceEEEEECCCC--ccCceeccC------cC---------CC--CCCCCCccH---HHHHHHHHH
Confidence 99999997764 47899997654 245666662 22 11 122699998 566666666
Q ss_pred HHHHHhCcchHHHHHHHHHHHHHHHHHHHhcC-CCeEEcCC--CC-cceEEEecCC--HHHHHHHHHHcCceeee-----
Q 001989 433 MYAVYHGPEGLKTIAQRVHGLAGTFALGLKKL-GTVEVQGL--PF-FDTVKVKCAD--AHAIASAAYKIEMNLRV----- 501 (985)
Q Consensus 433 ~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~-g~~~~~~~--~~-~~~~~~~~~~--~~~v~~~L~~~GI~~~~----- 501 (985)
+. +..+.++....+...+-++|.++|.+. +.+.+.+. ++ .+.+.|.+++ ++.+.-.|..+||.++.
T Consensus 251 ~~---~a~~~~~~~~~~~~~lr~~l~~~l~~~~p~~~~~g~~~~rlP~~~~~~f~gv~gE~ll~~L~~~gI~vStGSACs 327 (386)
T COG1104 251 AE---IAVEELEEENARLRKLRDRLEDGLLEIIPDVYLNGDDEPRLPNILNFSFPGVEGESLLLALDLAGIAVSTGSACS 327 (386)
T ss_pred HH---HHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEcCCcccCCCCeEEEEeCCCcHHHHHHhccccCeEEecccccc
Confidence 53 334567778888889999999999976 44666543 22 3567788887 88888899889998742
Q ss_pred --------------e----cCCeEEEEeccCCCHHHHHHHHHHHhCC
Q 001989 502 --------------V----DSNTVTASFDETTTLEDVDKLFIVFAGG 530 (985)
Q Consensus 502 --------------~----~~~~lris~t~~~t~edId~li~aL~~~ 530 (985)
. -.+.||+|++.+||+||||+++++|.+.
T Consensus 328 S~~~~pShVL~AmG~~~e~a~~siR~S~g~~tt~eei~~~~~~l~~~ 374 (386)
T COG1104 328 SGSLEPSHVLRAMGISEELAHGSIRFSLGRFTTEEEIDAAAEALKEI 374 (386)
T ss_pred CCCCCccHHHHHcCCChHHhCccEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 0 1378999999999999999999999853
|
|
| >TIGR01979 sufS cysteine desulfurases, SufS subfamily | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.1e-24 Score=253.35 Aligned_cols=308 Identities=18% Similarity=0.135 Sum_probs=229.5
Q ss_pred hhHHHHHHHHHHHHHHhcCCC-CcceeeccchHHHHHHHHHHhhhh-cCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEE
Q 001989 207 QGRLESLLNFQTMIADLTGLP-MSNASLLDEGTAAAEAMAMCNNIQ-KGKKKTFIIASNCHPQTIDICITRADGFDIKVV 284 (985)
Q Consensus 207 qg~l~~i~e~q~~ia~L~g~~-~~~~sl~~~~ta~~ea~~~a~~~~-~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~ 284 (985)
.-+.+.+.++++.+|+++|++ +.++.+++|+|.++..+..++... .++|++||+++.+|++....|+.+++..|++++
T Consensus 58 ~~~~~~~~~~r~~ia~~~~~~~~~~v~~~~g~t~~l~~~~~~~~~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~~g~~~~ 137 (403)
T TIGR01979 58 VRATEAYEAVREKVAKFINAASDEEIVFTRGTTESINLVAYSWGDSNLKAGDEIVISEMEHHANIVPWQLLAERTGATLK 137 (403)
T ss_pred HHHHHHHHHHHHHHHHHhCcCCCCeEEEeCCHHHHHHHHHHHhhhhcCCCCCEEEECcchhhHHHHHHHHHHHhcCcEEE
Confidence 334567889999999999998 568989999998776666554211 237899999999999999888877777899988
Q ss_pred EeCc--------hhhhc-cCCCEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCC-CCCCcccceEEE
Q 001989 285 VSDL--------KDIDY-KSGDVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTIL-KPPGELGADIVV 353 (985)
Q Consensus 285 ~v~~--------~~l~~-l~~~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l-~~~~~~GaDi~v 353 (985)
.++. +++++ ++++|++|++++| |.+|.+.|+++|+++||++|++++||. .++.|.+ .+..++|+|+++
T Consensus 138 ~v~~~~~~~~~~~~l~~~i~~~~~lv~~~~~~~~tG~~~~~~~i~~~~~~~~~~~ivD~-a~~~g~~~~~~~~~~~d~~~ 216 (403)
T TIGR01979 138 FIPLDDDGTLDLDDLEKLLTEKTKLVAITHVSNVLGTVNPVEEIAKLAHQVGAKVLVDG-AQAVPHMPVDVQALDCDFYV 216 (403)
T ss_pred EEecCCCCCCCHHHHHHHhccCCeEEEEEcccccccccCCHHHHHHHHHHcCCEEEEEc-hhhcCccccCccccCCCEEE
Confidence 8754 34555 7889999999987 789999999999999999999999953 3455543 234678999999
Q ss_pred ecCccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeee-cccccccccccccCCCccchhHHHHHHHH
Q 001989 354 GSAQRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVA-MQTREQHIRRDKATSNICTAQALLANMAA 432 (985)
Q Consensus 354 ~s~k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~-l~tre~~irre~atsni~t~~~l~a~~aa 432 (985)
++++|+.+| +|+|++++++++.+.+++...|+.... .+.+. ...+....|++.||+|+ ..+.++.++
T Consensus 217 ~s~~K~~gp-----~G~g~l~~~~~~~~~~~~~~~g~~~~~----~~~~~~~~~~~~~~~~~~gt~~~---~~~~al~~a 284 (403)
T TIGR01979 217 FSGHKMYGP-----TGIGVLYGKEELLEQMPPFLGGGEMIA----EVSFEETTYNEAPHKFEAGTPNI---AGVIGLGAA 284 (403)
T ss_pred EecccccCC-----CCceEEEEchHHHhcCCCeecCCCcee----ecccCccccCCChhhcCCCCccH---HHHHHHHHH
Confidence 999445333 458999999999888877665542110 00000 00011223456788876 445555555
Q ss_pred HHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCC----CcceEEEecCC--HHHHHHHHHHcCceeeee----
Q 001989 433 MYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLP----FFDTVKVKCAD--AHAIASAAYKIEMNLRVV---- 502 (985)
Q Consensus 433 ~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~----~~~~~~~~~~~--~~~v~~~L~~~GI~~~~~---- 502 (985)
+ .++...|++++.+++.+++++++++|+++++++++.+. ....+.|.+++ ..++.+.|.++||.++..
T Consensus 285 l--~~~~~~g~~~~~~~~~~l~~~l~~~l~~~~g~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~g~~~~ 362 (403)
T TIGR01979 285 I--DYLEAIGLENIEAHEHELTAYALERLGEIPGLRIYGPRDAEDRGGIISFNVEGVHPHDVGTILDEEGIAVRSGHHCA 362 (403)
T ss_pred H--HHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCccccCceEEEEeCCcCHHHHHHHHhhCCEEEcchhhhh
Confidence 4 55556688999999999999999999988449987432 23456666665 778999999999987531
Q ss_pred --------cCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 503 --------DSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 503 --------~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
.++.+|+|++.+||++|+|+|+++|+.
T Consensus 363 ~~~~~~~~~~~~iRiS~~~~~t~~di~~l~~~l~~ 397 (403)
T TIGR01979 363 QPLMRRFGVPATCRASFYIYNTEEDIDALVEALKK 397 (403)
T ss_pred HHHHHHhCCCCEEEEEeccCCCHHHHHHHHHHHHH
Confidence 147899999999999999999999973
|
This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved. |
| >PLN03032 serine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.2e-24 Score=246.64 Aligned_cols=293 Identities=17% Similarity=0.184 Sum_probs=210.3
Q ss_pred hhHHHHHHHHHHHHHHHhCCCccc---eecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEE
Q 001989 628 QGYQEMFNNLGEWLCTITGFDSFS---LQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKI 704 (985)
Q Consensus 628 ~G~~~~~~e~~~~la~l~G~~~~~---~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~v 704 (985)
..+.++++++.+++++++|++... ++.++|++++..++.++|.+ .++.+|+++..+|.+..++++..|+++
T Consensus 62 ~~a~~~e~~v~~~ia~llg~~~~~~~G~fTsGGTEaNl~al~~ar~~------~~~~~vi~s~~~H~Sv~kaa~~lg~~~ 135 (374)
T PLN03032 62 VHSRQFEVGVLDWFARLWELEKDEYWGYITTCGTEGNLHGILVGREV------FPDGILYASRESHYSVFKAARMYRMEA 135 (374)
T ss_pred ccHHHHHHHHHHHHHHHhCCCCccCCEEEeCchHHHHHHHHHHHHHh------CCCcEEEeCCCceeHHHHHHHHcCCCC
Confidence 467899999999999999997632 55666777775555544432 134579999999999999999999999
Q ss_pred EEEcCCCCCCCCHHHHHHHHHhcCCCEEEEEEEcCC-CccccccCHHHHHHHHHHcC-----CEEEEEccccccccCCCC
Q 001989 705 VSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPS-THGVYEEGIDEICKIIHDNG-----GQVYMDGANMNAQVGLTS 778 (985)
Q Consensus 705 v~v~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~pn-~~G~i~~di~eI~~la~~~g-----alliVD~a~~~~~~~l~~ 778 (985)
+.||+|++|.+|+++|+++|++...++.+|+++..| .+|.++ |+++|+++|+++| +|+|||+|+..+...+..
T Consensus 136 ~~V~~d~~g~id~~~L~~~i~~~~~~~~lvv~tagtt~tG~id-pi~eI~~i~~~~g~~~~~~~lHvDaA~gg~~~p~~~ 214 (374)
T PLN03032 136 VKVPTLPSGEIDYDDLERALAKNRDKPAILNVNIGTTVKGAVD-DLDRILRILKELGYTEDRFYIHCDGALFGLMMPFVS 214 (374)
T ss_pred eEeeeCCCCcCcHHHHHHHHHHcCCCCEEEEEEecCcCCccCC-CHHHHHHHHHHhCCCCCCeeEEEEccchhhhhhccC
Confidence 999999999999999999998422257788888775 599999 9999999999997 589999998543333210
Q ss_pred -----CCccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCC--ccccCCCCCCCCCCCCCCCCCCcchhhhH
Q 001989 779 -----PGYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSH--PVVSTGGIPAPEKSQPLGTIAAAPWGSAL 851 (985)
Q Consensus 779 -----pg~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~--~~g~~~~~~~~~~~~~~~~i~s~~~g~~~ 851 (985)
....++|.+++|+||+++.|+ |+|++++++.....+... ++.. . . ..+.++..| .
T Consensus 215 ~~~~~~~~~~vDSis~s~HK~~g~P~-----g~G~ll~r~~~~~~~~~~~~Yl~~-~-------d---~ti~gSR~g--~ 276 (374)
T PLN03032 215 RAPEVTFRKPIGSVSVSGHKFLGCPM-----PCGVALTRKKHVKALSQNVEYLNS-R-------D---ATIMGSRNG--H 276 (374)
T ss_pred CCcccCCCcCCcEEEECcccccCCCc-----CeEEEEEEchhhHhhccCCcccCC-C-------C---CcccCCCch--H
Confidence 123469999999999875443 678899987654433211 1110 0 0 112222211 3
Q ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHC
Q 001989 852 ILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDY 930 (985)
Q Consensus 852 ~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~ 930 (985)
.++..|+.|..+|.+|++++.++++++++|+.++|++ ++.+.. + +....+++..+ ..+. + .+
T Consensus 277 ~~l~~w~~l~~~G~~g~~~~~~~~~~~a~~l~~~l~~~~~~~~~-~---p~~~~V~f~~~--------~~~~----~-~~ 339 (374)
T PLN03032 277 APLYLWYTLRRKGYRGIKRDVQHCMRNAHYLKDRLTEAGLTCRL-N---ELSSTVVFERP--------MDEA----F-IK 339 (374)
T ss_pred HHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHhCCCcEEE-C---CCceEEEEcCC--------CcHh----H-hh
Confidence 4567899999999999999999999999999999987 566543 2 22333333321 1121 2 26
Q ss_pred CCccCCCCCCCCCEEEEeccCCCCHHHHHHHHccCChh
Q 001989 931 GFHGPTMSWPVPGTLMIEPTESESKSWTGIVMLSSPSE 968 (985)
Q Consensus 931 Gi~~~~~~~p~~~~lris~t~~~t~eeId~~~~~~~l~ 968 (985)
||.+.+.. +.+|++++...+++-||+ |++.|+
T Consensus 340 ~w~l~~~~----~~~hi~vm~~~~~~~id~--fi~dl~ 371 (374)
T PLN03032 340 KWQLACEG----DIAHVVVMPNVTVEKLDE--FVEELV 371 (374)
T ss_pred eeeecccC----CEEEEEECCCCCHHHHHH--HHHHHh
Confidence 88876543 689999999999999999 555554
|
|
| >PRK02769 histidine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=9.6e-25 Score=249.17 Aligned_cols=297 Identities=16% Similarity=0.168 Sum_probs=213.5
Q ss_pred hHHHHHHHHHHHHHHHhCCCccc---eecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEE
Q 001989 629 GYQEMFNNLGEWLCTITGFDSFS---LQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIV 705 (985)
Q Consensus 629 G~~~~~~e~~~~la~l~G~~~~~---~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv 705 (985)
.+.++++++.+++++++|++... ++.++|++++..++.+.|.+ .++++|++++.+|.++.+.++..|++.+
T Consensus 62 ~~~~~e~~~~~~~a~l~g~~~~~~~G~~TsGgTean~~a~~~ar~~------~~~~~ii~s~~~H~Sv~ka~~~lg~~~~ 135 (380)
T PRK02769 62 NSFDFERDVMNFFAELFKIPFNESWGYITNGGTEGNLYGCYLAREL------FPDGTLYYSKDTHYSVSKIARLLRIKSR 135 (380)
T ss_pred ChHHHHHHHHHHHHHHhCCCCCCCCEEEecChHHHHHHHHHHHHHh------CCCcEEEeCCCceehHHHHHHHcCCCCc
Confidence 57788999999999999997532 45556677665444444432 2467899999999999999999999999
Q ss_pred EEcCCCCCCCCHHHHHHHHHhcCCCEEEEEEEcCC-CccccccCHHHHHHHHHHcC---CEEEEEccccccccCCCC---
Q 001989 706 SVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPS-THGVYEEGIDEICKIIHDNG---GQVYMDGANMNAQVGLTS--- 778 (985)
Q Consensus 706 ~v~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~pn-~~G~i~~di~eI~~la~~~g---alliVD~a~~~~~~~l~~--- 778 (985)
.|+++++|.+|+++|+++|++...+|.+|++++++ .+|.++ |+++|+++|+++| +++|||+|+..+...+..
T Consensus 136 ~V~~~~~g~id~~~L~~~i~~~~~~t~lvv~t~gtt~tG~id-pi~~I~~i~~~~g~~~~~lHVDaA~gg~~~p~~~~~~ 214 (380)
T PRK02769 136 VITSLPNGEIDYDDLISKIKENKNQPPIIFANIGTTMTGAID-NIKEIQEILKKIGIDDYYIHADAALSGMILPFVNNPP 214 (380)
T ss_pred eeccCCCCcCcHHHHHHHHHhCCCCcEEEEEEeCCCCCcccC-CHHHHHHHHHHhCCCceEEEEEecccceeecccCccc
Confidence 99998899999999999998322348999999986 599999 8999999999998 699999998643332210
Q ss_pred --CCccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHH
Q 001989 779 --PGYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPIS 856 (985)
Q Consensus 779 --pg~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a 856 (985)
....++|.+++|+||+++.|+ |+|+++++++....+.... ++.. ..+. .+.+++- ...++..
T Consensus 215 ~~d~~~~vDsis~s~HK~~~~P~-----g~G~l~~r~~~~~~~~~~~-----~yl~-~~d~---t~~GSR~--g~~~l~l 278 (380)
T PRK02769 215 PFSFADGIDSIAISGHKFIGSPM-----PCGIVLAKKKYVERISVDV-----DYIG-SRDQ---TISGSRN--GHTALLL 278 (380)
T ss_pred cCCccCCCCEEEECCcccCCCCC-----CcEEEEEehhhhhhcccCc-----cccC-CCCC---CccCCCC--cHHHHHH
Confidence 112389999999999985442 6789999976554432110 0000 0000 1111221 1234567
Q ss_pred HHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccC
Q 001989 857 YTYIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGP 935 (985)
Q Consensus 857 ~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~ 935 (985)
|+.|..+|.+|++++.+++.++++|+.++|++ ++++.. . +..+.+++..+ + .++. +||++.
T Consensus 279 w~aL~~lg~~G~~~~~~~~~~la~~l~~~L~~~g~~~~~-~---p~~~~v~f~~~--------~-~~~~-----~~w~l~ 340 (380)
T PRK02769 279 WAAIRSLGSKGLRQRVQHCLDMAQYAVDRLQANGIPAWR-N---PNSITVVFPCP--------S-ERIW-----KKWHLA 340 (380)
T ss_pred HHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEc-C---CCceEEEEcCC--------C-HHHH-----hCeeEc
Confidence 99999999999999999999999999999987 565543 2 33433444322 2 2332 688876
Q ss_pred CCCCCCCCEEEEeccCCCCHHHHHHHHccCChhHHHH
Q 001989 936 TMSWPVPGTLMIEPTESESKSWTGIVMLSSPSEKKLH 972 (985)
Q Consensus 936 ~~~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~ 972 (985)
... +.+||+++..+|+|.||. |++.|.+.+.
T Consensus 341 ~~~----~~~hi~~~~~~~~~~~~~--f~~dl~~~~~ 371 (380)
T PRK02769 341 TSG----NQAHIITMPHHNKQQIDS--LIDELIFDLK 371 (380)
T ss_pred ccC----CEEEEEECCCCCHHHHHH--HHHHHHHHHh
Confidence 553 689999999999999999 6666666554
|
|
| >TIGR01814 kynureninase kynureninase | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.9e-25 Score=254.60 Aligned_cols=304 Identities=13% Similarity=0.081 Sum_probs=218.7
Q ss_pred HHHHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcC-CCCEEEEcCCCChhHHHHHHHhhcCCCeEE----E
Q 001989 210 LESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKG-KKKTFIIASNCHPQTIDICITRADGFDIKV----V 284 (985)
Q Consensus 210 l~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~-~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v----~ 284 (985)
.....+.++ + +|+|+++.++.+++|+|.++..++.++ +..+ ++++|+++..+||++..+|+..++..|+++ +
T Consensus 70 ~~~~~~~~~-~-~l~g~~~~~v~~~~~~t~~l~~~~~~~-~~~~~~~~~i~~~~~~~~s~~~~~~~~~~~~g~~~~~~~~ 146 (406)
T TIGR01814 70 FTLDESLLK-L-RLVGAKEDEVVVMNTLTINLHLLLASF-YKPTPKRYKILLEAKAFPSDHYAIESQLQLHGLTVEESMV 146 (406)
T ss_pred hhhhhhhcc-c-cccCCCCCcEEEeCCchHHHHHHHHHh-cCCcCCccEEEecCCCCChHHHHHHHHHHhcCCCcccceE
Confidence 333444444 4 899999989999999998777766554 2211 234789999999999998876566678776 3
Q ss_pred EeCc--------hhhhc-c---CCCEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCC-CCCcccce
Q 001989 285 VSDL--------KDIDY-K---SGDVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILK-PPGELGAD 350 (985)
Q Consensus 285 ~v~~--------~~l~~-l---~~~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~-~~~~~GaD 350 (985)
.++. +++++ + +++|++|+++++ |.+|.+.|+++|+++||++|++++||+ .+++|.+. +..++|+|
T Consensus 147 ~~~~~~~g~~~~~~l~~~~~~~~~~t~lv~~~~v~~~tG~~~~~~~i~~~~~~~g~~~~vD~-aq~~G~~~id~~~~gvD 225 (406)
T TIGR01814 147 QIEPREEETLRLEDILDTIEKNGDDIAVILLSGVQYYTGQLFDMAAITRAAHAKGALVGFDL-AHAVGNVPLDLHDWGVD 225 (406)
T ss_pred EeccCCCCccCHHHHHHHHHhcCCCeEEEEEeccccccceecCHHHHHHHHHHcCCEEEEEc-ccccCCcccccccCCCC
Confidence 4432 34544 3 578999999987 578999999999999999999999953 45667543 45689999
Q ss_pred EEEecC-ccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHH
Q 001989 351 IVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLAN 429 (985)
Q Consensus 351 i~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~ 429 (985)
++++++ |+| +|||| |+++++++....+.+++.||.-..... .|........+..|++.||+|+ .+.+++
T Consensus 226 ~~~~s~hK~l-----~g~pG-~~l~v~~~~~~~~~p~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~GT~~~---~~~~~l 295 (406)
T TIGR01814 226 FACWCTYKYL-----NAGPG-AGAFVHEKHAHTERPRLAGWWGHARPT-RFKMDNTLGLIPCGFRISNPPI---LSVAAL 295 (406)
T ss_pred EEEEcCcccc-----CCCCC-eEEEEehhhhhhcCCCCCcccCCCCcc-ccccccccCCCccceeeCCccH---HHHHHH
Confidence 999999 556 35677 667776655545666677762211110 0111110112334677899998 566677
Q ss_pred HHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcC-C---CeEEcCCC----CcceEEEecC-CHHHHHHHHHHcCceee
Q 001989 430 MAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKL-G---TVEVQGLP----FFDTVKVKCA-DAHAIASAAYKIEMNLR 500 (985)
Q Consensus 430 ~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~-g---~~~~~~~~----~~~~~~~~~~-~~~~v~~~L~~~GI~~~ 500 (985)
.+++ .++...|++++.+++.++++|+++.|+++ | +++++++. ....++|..+ .+.++.+.|.++||.+.
T Consensus 296 ~~al--~~~~~~g~~~i~~~~~~l~~~l~~~l~~~~~~~~~~~i~~~~~~~~r~~~v~~~~~~~~~~~~~~L~~~gi~v~ 373 (406)
T TIGR01814 296 RGSL--DIFDQAGMEALRKKSLLLTDYLEELIKARCGGPPVLTIITPRDHAQRGCQLSLTHPVPGKAVFQALIKRGVIGD 373 (406)
T ss_pred HHHH--HHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCCceEEeCCCChhhcCCeEEEEecCCHHHHHHHHHHCCEEEe
Confidence 7776 56667789999999999999999999875 2 38877531 2235677776 48899999999999876
Q ss_pred eecCCeEEEEe-ccCCCHHHHHHHHHHHhC
Q 001989 501 VVDSNTVTASF-DETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 501 ~~~~~~lris~-t~~~t~edId~li~aL~~ 529 (985)
...++.+|+|+ +.+||++|||+++++|+.
T Consensus 374 ~~~~~~iRiS~~~~~nt~~did~l~~~l~~ 403 (406)
T TIGR01814 374 KREPSVIRVAPVPLYNTFVDVYDAVNVLEE 403 (406)
T ss_pred ccCCCeEEEechhccCCHHHHHHHHHHHHH
Confidence 54457899999 689999999999999974
|
This model describes kynureninase, a pyridoxal-phosphate enzyme. Kynurinine is a Trp breakdown product and a precursor for NAD. In Chlamydia psittaci, an obligate intracellular pathogen, kynureninase makes anthranilate, a Trp precursor, from kynurenine. This counters the tryptophan hydrolysis that occurs in the host cell in response to the pathogen. |
| >TIGR01976 am_tr_V_VC1184 cysteine desulfurase family protein, VC1184 subfamily | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.5e-24 Score=246.98 Aligned_cols=298 Identities=19% Similarity=0.189 Sum_probs=222.4
Q ss_pred hhhHHHHHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEE
Q 001989 206 AQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVV 285 (985)
Q Consensus 206 sqg~l~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~ 285 (985)
+++..+.+.++++.+++++|.+..++.+..|+|.++..+..++....++||+||+++..|+++...|...++..|++++.
T Consensus 55 ~~~~~~~~~~l~~~ia~~~~~~~~~v~~~~~~t~~l~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~~~~ 134 (397)
T TIGR01976 55 SRRADQVVDDAREAVADLLNADPPEVVFGANATSLTFLLSRAISRRWGPGDEVIVTRLDHEANISPWLQAAERAGAKVKW 134 (397)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCeEEEeCCHHHHHHHHHHHHHhcCCCCCEEEEcCCchHhHHHHHHHHHHhcCCEEEE
Confidence 56777889999999999999987788888888876655444432112388999999999999998887666778999888
Q ss_pred eCc---------hhhhc-cCCCEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCC-CCCCcccceEEE
Q 001989 286 SDL---------KDIDY-KSGDVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTIL-KPPGELGADIVV 353 (985)
Q Consensus 286 v~~---------~~l~~-l~~~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l-~~~~~~GaDi~v 353 (985)
++. +++++ ++++|++|++.+| |++|.+.|+++|+++||++|++++||. .++.|.. .+..++|+|+++
T Consensus 135 ~~~~~~~~~~~~~~l~~~i~~~~~lv~i~~~~n~tG~~~~~~~i~~~~~~~~~~~ivD~-a~~~~~~~~~~~~~~~d~~~ 213 (397)
T TIGR01976 135 ARVDEATGELHPDDLASLLSPRTRLVAVTAASNTLGSIVDLAAITELVHAAGALVVVDA-VHYAPHGLIDVQATGADFLT 213 (397)
T ss_pred EeccccCCCcCHHHHHHhcCCCceEEEEeCCCCCCCccCCHHHHHHHHHHcCCEEEEeh-hhhccccCCCHHHcCCCEEE
Confidence 754 34555 7788999999998 789999999999999999999999953 3344422 234678999999
Q ss_pred ecCccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHH
Q 001989 354 GSAQRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAM 433 (985)
Q Consensus 354 ~s~k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~ 433 (985)
++++|+. ||.+|++++++++++.+.+....+ .. .....|++.||.|+ ..+.++.+++
T Consensus 214 ~s~~K~~------g~~~G~l~~~~~~~~~l~~~~~~~----------~~----~~~~~~~~~gt~~~---~~~~~l~~al 270 (397)
T TIGR01976 214 CSAYKFF------GPHMGILWGRPELLMNLPPYKLTF----------SY----DTGPERFELGTPQY---ELLAGVVAAV 270 (397)
T ss_pred Eechhhc------CCceEEEEEcHHHHhhCCCccccC----------cc----CCCcchhcCCCCCH---HHHHHHHHHH
Confidence 9984442 245899999999888875533221 11 11223567888887 4455566665
Q ss_pred -HHHHhCc-----------chHHHHHHHHHHHHHHHHHHHhcCCCeEEcCC----CCcceEEEecCC--HHHHHHHHHHc
Q 001989 434 -YAVYHGP-----------EGLKTIAQRVHGLAGTFALGLKKLGTVEVQGL----PFFDTVKVKCAD--AHAIASAAYKI 495 (985)
Q Consensus 434 -~l~~~g~-----------~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~----~~~~~~~~~~~~--~~~v~~~L~~~ 495 (985)
++...|. ++++++.+++.+++++++++|+++++++++.+ ...+.+.+..++ +.++.++|.++
T Consensus 271 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 350 (397)
T TIGR01976 271 DYLAGLGESANGSRRERLVASFQAIDAYENRLAEYLLVGLSDLPGVTLYGVARLAARVPTVSFTVHGLPPQRVVRRLADQ 350 (397)
T ss_pred HHHHHhCcccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCccCCCceEEEEeCCcCHHHHHHHHHHC
Confidence 3333442 14788899999999999999999866888743 234556666654 78899999999
Q ss_pred Cceeeee---------------cCCeEEEEeccCCCHHHHHHHHHHH
Q 001989 496 EMNLRVV---------------DSNTVTASFDETTTLEDVDKLFIVF 527 (985)
Q Consensus 496 GI~~~~~---------------~~~~lris~t~~~t~edId~li~aL 527 (985)
||.++.. ..+.+|+|++.+||++|||+|+++|
T Consensus 351 gI~v~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l 397 (397)
T TIGR01976 351 GIDAWAGHFYAVRLLRRLGLNDEGGVVRVGLAHYNTAEEVDRLLEAL 397 (397)
T ss_pred CeEEEeCccchHHHHHHhCCCCCCCeEEEEeeccCCHHHHHHHHHhC
Confidence 9988642 1357999999999999999999875
|
This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family (pfam00266). The most closely related characterized proteins are active as cysteine desulfurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown, but seems unlike to be as an aminotransferase. |
| >PLN02651 cysteine desulfurase | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.6e-24 Score=245.55 Aligned_cols=283 Identities=17% Similarity=0.136 Sum_probs=216.4
Q ss_pred hhHHHHHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHh-hhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEE
Q 001989 207 QGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCN-NIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVV 285 (985)
Q Consensus 207 qg~l~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~-~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~ 285 (985)
....+.+.++++.+++++|.++.++.+++|+|.++..++.+. ....++|++|+++..+|+++...|..+. ..|++++.
T Consensus 39 ~~~~~~~~~~r~~la~~~g~~~~~v~~t~~~t~a~~~~l~~~~~~~~~~g~~vl~~~~~h~s~~~~~~~~~-~~g~~v~~ 117 (364)
T PLN02651 39 WESEDAVEKARAQVAALIGADPKEIIFTSGATESNNLAIKGVMHFYKDKKKHVITTQTEHKCVLDSCRHLQ-QEGFEVTY 117 (364)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCeEEEeCCHHHHHHHHHHHHHHhccCCCCEEEEcccccHHHHHHHHHHH-hcCCEEEE
Confidence 445677889999999999999888999999987765554332 2112478999999999999999887654 57888888
Q ss_pred eCc--------hhhhc-cCCCEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCC-CCCCcccceEEEe
Q 001989 286 SDL--------KDIDY-KSGDVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTIL-KPPGELGADIVVG 354 (985)
Q Consensus 286 v~~--------~~l~~-l~~~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l-~~~~~~GaDi~v~ 354 (985)
++. +++++ ++++|++|+++++ |.+|.+.|+++|+++||++|++++||+ .++.|.+ .+..+||+|++++
T Consensus 118 v~~~~~~~~d~~~l~~~i~~~t~lv~v~~~~n~tG~~~~l~~I~~~~~~~g~~~~vD~-a~~~g~~~~~~~~~~~D~~~~ 196 (364)
T PLN02651 118 LPVKSDGLVDLDELAAAIRPDTALVSVMAVNNEIGVIQPVEEIGELCREKKVLFHTDA-AQAVGKIPVDVDDLGVDLMSI 196 (364)
T ss_pred EccCCCCcCCHHHHHHhcCCCcEEEEEECCCCCceecccHHHHHHHHHHcCCEEEEEc-chhhCCcccCcccCCCCEEEe
Confidence 754 34566 7889999999886 789999999999999999999999953 4466643 3567899999999
Q ss_pred cCccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHH
Q 001989 355 SAQRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMY 434 (985)
Q Consensus 355 s~k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~ 434 (985)
+++||++| +|+|++++++++..++.+.+.|+.. ..+++.||+|+ .++.++.+++
T Consensus 197 s~hK~~gp-----~G~g~l~v~~~~~~~l~p~~~g~~~-----------------~~~~~~GT~~~---~~~~~l~~al- 250 (364)
T PLN02651 197 SGHKIYGP-----KGVGALYVRRRPRVRLEPLMSGGGQ-----------------ERGRRSGTENT---PLVVGLGAAC- 250 (364)
T ss_pred chhhhCCC-----CceEEEEEcCCCCCCCCccccCCCc-----------------cCCccCCCccH---HHHHHHHHHH-
Confidence 99657544 4689999999988888776665210 11346799998 5677888887
Q ss_pred HHHhCcchHHHHHHHHHHHHHHHHHHHhc-CCCeEEcCC--CC---cceEEEecCC--HHHHHHHHHHcCceeee-----
Q 001989 435 AVYHGPEGLKTIAQRVHGLAGTFALGLKK-LGTVEVQGL--PF---FDTVKVKCAD--AHAIASAAYKIEMNLRV----- 501 (985)
Q Consensus 435 l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~-~g~~~~~~~--~~---~~~~~~~~~~--~~~v~~~L~~~GI~~~~----- 501 (985)
.++.. +.+++.+++.+++++++++|++ +.+++++.+ +. ...++|..++ +.++.++|.+ |.++.
T Consensus 251 -~~~~~-~~~~i~~~~~~l~~~l~~~l~~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~~~L~~--i~v~~g~~c~ 326 (364)
T PLN02651 251 -ELAMK-EMDYDEKHMKALRERLLNGLRAKLGGVRVNGPRDPEKRYPGTLNLSFAYVEGESLLMGLKE--VAVSSGSACT 326 (364)
T ss_pred -HHHHH-hHHHHHHHHHHHHHHHHHHHHhhCCCEEEECCCCcccCcCCEEEEEeCCCCHHHHHHHhCC--EEEEchhhcC
Confidence 33333 4589999999999999999986 534998853 21 2367777776 8899999965 65521
Q ss_pred ------------e------cCCeEEEEeccCCCHHHHH
Q 001989 502 ------------V------DSNTVTASFDETTTLEDVD 521 (985)
Q Consensus 502 ------------~------~~~~lris~t~~~t~edId 521 (985)
+ ..+.+|+|++.+||++|||
T Consensus 327 ~~~~~~~~~~~~~g~~~~~~~~~vR~S~~~~~t~~did 364 (364)
T PLN02651 327 SASLEPSYVLRALGVPEEMAHGSLRLGVGRFTTEEEVD 364 (364)
T ss_pred CCCCCcCHHHHHcCCChHHhCceEEEEcCCCCCHHHcC
Confidence 0 1368999999999999986
|
|
| >TIGR03812 tyr_de_CO2_Arch tyrosine decarboxylase MnfA | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.9e-24 Score=243.98 Aligned_cols=356 Identities=17% Similarity=0.221 Sum_probs=233.6
Q ss_pred CHHHHHHHHHHHhccccCcccccccccccccCCCccccccccc-cccccccCCCCchhhhhhHHHHHHHHHHHHHHHhCC
Q 001989 569 TEHELLRYIHLLQSKELSLCHSMIPLGSCTMKLNATTEMMPVT-WPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGF 647 (985)
Q Consensus 569 se~e~~~~l~~l~~~~~~~~~~~~~lG~~t~~~~~~~~~~~~~-~~~f~~~~p~~p~e~~~G~~~~~~e~~~~la~l~G~ 647 (985)
||+|++..+.++.+.......+...+..|+++.+...+..... .....+ + ....|..++.+++++++++++|+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--~----~~~~~~~~~~~~~~~~la~~~g~ 74 (373)
T TIGR03812 1 SEEEVLEELKEYRSEDLKYSDGRILGSMCTNPHPIAVKAYDMFIETNLGD--P----GLFPGTKKIEEEVVGSLGNLLHL 74 (373)
T ss_pred CHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCchHHHHHHHHHHhhcCCCC--c----ccCccHHHHHHHHHHHHHHHhCC
Confidence 6899999999998887765333332334544443322211111 111111 1 11245667788999999999999
Q ss_pred Cccc-eecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcCCCCCCCCHHHHHHHHHh
Q 001989 648 DSFS-LQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKGNINIEELRKAAEA 726 (985)
Q Consensus 648 ~~~~-~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~d~~g~iD~e~L~~~i~~ 726 (985)
+... +..++|++++..++.+++... ..+ .++++|++++..|.++...++..|++++.+++++++.+|+++|+++++
T Consensus 75 ~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~-~~g~~vl~~~~~h~~~~~~~~~~G~~~~~v~~~~~~~~d~~~l~~~l~- 151 (373)
T TIGR03812 75 PDAYGYIVSGGTEANIQAVRAAKNLA-REE-KRTPNIIVPESAHFSFEKAAEMLGLELRYAPLDEDYTVDVKDVEDLID- 151 (373)
T ss_pred CCCCeEEeccHHHHHHHHHHHHHHHH-hcc-CCCcEEEECCcchHHHHHHHHHcCCeEEEEeeCCCCCcCHHHHHHHHh-
Confidence 7643 455666665544444433211 111 255789999988888777788899999999998889999999999997
Q ss_pred cCCCEEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCC-----C----CCCccCCcEEEeCCccccc
Q 001989 727 NRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGL-----T----SPGYIGADVCHLNLHKTFC 796 (985)
Q Consensus 727 ~~~~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l-----~----~pg~~g~Di~~~s~hK~l~ 796 (985)
+++.++++..| |++|.+. |+++|+++||++|+++|||++|......+ . +....++|++++++|||+.
T Consensus 152 --~~~~~vv~~~~~~~tG~~~-~~~~i~~l~~~~~~~livD~a~~~~~~~~~~~~~~~~~~d~~~~~~d~~~~s~~K~~~ 228 (373)
T TIGR03812 152 --DNTIGIVGIAGTTELGQID-DIEELSKIALENGIYLHVDAAFGGFVIPFLKKGYNPPPFDFSLPGVQSITIDPHKMGL 228 (373)
T ss_pred --hCcEEEEEECCCCCCCccC-CHHHHHHHHHHcCCeEEEEcCchhHHHHHHhcCCCCCCccccCCCCCEEEECccccCC
Confidence 56654444445 5699998 89999999999999999999985322111 0 1112478999999999753
Q ss_pred ccCCCCCCceEEEEEcccccCcCCC---CccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHHHHHHHH
Q 001989 797 IPHGGGGPGMGPIGVKKHLAPFLPS---HPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASK 873 (985)
Q Consensus 797 ~p~g~GGPg~G~i~~~~~l~~~lp~---~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl~~~~~ 873 (985)
.| .|.+|+++.++++.+.+.. ...+. +. ....++ + +...++++++.+..++.+|+.+..+
T Consensus 229 ~~----~~~G~~~~~~~~~~~~l~~~~~~~~~~--------~~--~~~~gt-~--~~~~~~~~~~~l~~l~~~g~~~~~~ 291 (373)
T TIGR03812 229 SP----IPAGGILFRSKSYLKYLSVDAPYLTVK--------KQ--ATITGT-R--SGASAAATYAVIKYLGREGYRKIVA 291 (373)
T ss_pred Cc----CCceEEEEeCHHHHhhhcccCcccCCC--------CC--cceEee-c--hhHHHHHHHHHHHHhCHHHHHHHHH
Confidence 22 2233566566665544321 11000 00 000011 1 1223455678888899999999999
Q ss_pred HHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCCCCCCCEEEEeccCC
Q 001989 874 IAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTES 952 (985)
Q Consensus 874 ~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~~p~~~~lris~t~~ 952 (985)
+..+++++++++|++ ++...+. +..+.+.+.++ +..++.++|.++||.+..... ++.+|++++.+
T Consensus 292 ~~~~~~~~l~~~L~~~g~~~~~~----~~~~~v~~~~~--------~~~~v~~~L~~~gi~v~~~~~--~~~iRis~~~~ 357 (373)
T TIGR03812 292 ECMENTRYLVEELKKIGFEPVIE----PVLNIVAFEVD--------DPEEVRKKLRDRGWYVSVTRC--PKALRIVVMPH 357 (373)
T ss_pred HHHHHHHHHHHHHHhCCCeEEcC----CCceEEEEEeC--------CHHHHHHHHHHCCceeccCCC--CCEEEEEEECC
Confidence 999999999999987 4443332 22333444443 356899999999999865432 37899999999
Q ss_pred CCHHHHHHHHccCChhH
Q 001989 953 ESKSWTGIVMLSSPSEK 969 (985)
Q Consensus 953 ~t~eeId~~~~~~~l~~ 969 (985)
+|++|+|+ +++.|++
T Consensus 358 ~t~edid~--l~~~L~~ 372 (373)
T TIGR03812 358 VTREHIEE--FLEDLKE 372 (373)
T ss_pred CCHHHHHH--HHHHHhh
Confidence 99999999 6666654
|
Members of this protein family are the archaeal form, MnfA, of tyrosine decarboxylase, and are involved in methanofuran biosynthesis. Members show clear homology to the Enterococcus form, Tdc, that is involved in tyrosine decarboxylation for resistance to acidic conditions. |
| >TIGR03402 FeS_nifS cysteine desulfurase NifS | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.2e-23 Score=242.58 Aligned_cols=292 Identities=17% Similarity=0.179 Sum_probs=219.1
Q ss_pred hhhHHHHHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEE
Q 001989 206 AQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVV 285 (985)
Q Consensus 206 sqg~l~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~ 285 (985)
+....+.+.++++.+++++|.++.++.+++|+|.++..++.+......++++|+++..+||++...++.+. ..|++++.
T Consensus 37 ~~~~~~~~~~~r~~la~~~g~~~~~i~~t~~~t~a~~~al~~~~~~~~~~~~vv~~~~~~~s~~~~~~~~~-~~G~~v~~ 115 (379)
T TIGR03402 37 GGEVGKAVEEAREQVAKLLGAEPDEIIFTSGGTESDNTAIKSALAAQPEKRHIITTAVEHPAVLSLCQHLE-KQGYKVTY 115 (379)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCeEEEeCcHHHHHHHHHHHHHHhcCCCCeEEEcccccHHHHHHHHHHH-HcCCEEEE
Confidence 44567788999999999999998889999999988776665432111256899999999999999887654 47999888
Q ss_pred eCc--------hhhhc-cCCCEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCC-CCCcccceEEEe
Q 001989 286 SDL--------KDIDY-KSGDVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILK-PPGELGADIVVG 354 (985)
Q Consensus 286 v~~--------~~l~~-l~~~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~-~~~~~GaDi~v~ 354 (985)
++. +++++ +++++++|+++++ |.+|.+.|+++|+++||++|++++||+ .++.|... +..++|+|++++
T Consensus 116 v~~~~~g~~~~~~l~~~i~~~~~lv~i~~~~n~tG~~~~~~~I~~l~~~~g~~vivD~-~~~~g~~~~~~~~~~~D~~~~ 194 (379)
T TIGR03402 116 LPVDEEGRLDLEELRAAITDDTALVSVMWANNETGTIFPIEEIGEIAKERGALFHTDA-VQAVGKIPIDLKEMNIDMLSL 194 (379)
T ss_pred EccCCCCcCCHHHHHHhcCCCcEEEEEEcccCCeeecccHHHHHHHHHHcCCEEEEEC-cccccccccCcccCCCCEEEE
Confidence 754 34666 7889999999886 789999999999999999999999953 44556442 446799999999
Q ss_pred cCccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHH
Q 001989 355 SAQRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMY 434 (985)
Q Consensus 355 s~k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~ 434 (985)
+++|+++| +|+|+++++++. .+.+.+.|.. +..+++.||.|+ .+++++.+++
T Consensus 195 s~~K~~gp-----~G~g~l~v~~~~--~~~p~~~g~~-----------------~~~~~~~gt~~~---~~~~~l~~al- 246 (379)
T TIGR03402 195 SGHKLHGP-----KGVGALYIRKGT--RFRPLLRGGH-----------------QERGRRAGTENV---PGIVGLGKAA- 246 (379)
T ss_pred cHHHcCCC-----CceEEEEECCCC--CCCCcccCCc-----------------cCCCcCCCCccH---HHHHHHHHHH-
Confidence 99547544 468999998764 2333333310 011234688887 5666777776
Q ss_pred HHHhCcchHHHHHHHHHHHHHHHHHHHhc-CCCeEEcCCC--Cc-ceEEEecCC--HHHHHHHHHHcCceeeee------
Q 001989 435 AVYHGPEGLKTIAQRVHGLAGTFALGLKK-LGTVEVQGLP--FF-DTVKVKCAD--AHAIASAAYKIEMNLRVV------ 502 (985)
Q Consensus 435 l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~-~g~~~~~~~~--~~-~~~~~~~~~--~~~v~~~L~~~GI~~~~~------ 502 (985)
.++ .++++++.++..++.++++++|++ +.++++..++ .. ..+.|.+++ +.++.+.|.++||.++.-
T Consensus 247 -~~~-~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gI~v~~g~~c~~~ 324 (379)
T TIGR03402 247 -ELA-TEHLEEENTRVRALRDRLEAGLLARIPDARLNGDPTKRLPNTVNISFEYIEGEAILLLLDMEGICASSGSACTSG 324 (379)
T ss_pred -HHH-HHhHHHHHHHHHHHHHHHHHHHHhhCCCEEEeCCCccCCCCEEEEEecCCCHHHHHHhhccCCEEEEchhhcCCC
Confidence 232 346788889999999999999986 6448877432 21 345555554 889999999899987521
Q ss_pred -----------------cCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 503 -----------------DSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 503 -----------------~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
..+.+|+|++.+||++|||+++++|+.
T Consensus 325 ~~~~~~~~~~lg~~~~~~~~~vR~S~~~~~t~~di~~~~~~l~~ 368 (379)
T TIGR03402 325 SLEPSHVLRAMGVPHTAAHGSIRFSLSRYNTEEDIDYVLEVLPP 368 (379)
T ss_pred CCCcCHHHHHcCCChhhcCceEEEEcCCCCCHHHHHHHHHHHHH
Confidence 136899999999999999999999984
|
Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403. |
| >cd06453 SufS_like Cysteine desulfurase (SufS)-like | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.9e-23 Score=240.36 Aligned_cols=307 Identities=18% Similarity=0.149 Sum_probs=229.2
Q ss_pred HhhhHHHHHHHHHHHHHHhcCCC-CcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEE
Q 001989 205 IAQGRLESLLNFQTMIADLTGLP-MSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKV 283 (985)
Q Consensus 205 ~sqg~l~~i~e~q~~ia~L~g~~-~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v 283 (985)
.++...+.+.++++.+++++|.+ +.++.+++|+|.++..++.++.....+|++|+++...|++....+..+++..|+++
T Consensus 37 ~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~g~t~a~~~~~~~l~~~~~~g~~vl~~~~~~~~~~~~~~~~~~~~g~~~ 116 (373)
T cd06453 37 LSARATDAYEAAREKVARFINAPSPDEIIFTRNTTEAINLVAYGLGRANKPGDEIVTSVMEHHSNIVPWQQLAERTGAKL 116 (373)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCCeEEEeCCHHHHHHHHHHHhhhcCCCCCEEEECcchhHHHHHHHHHHHhhcCcEE
Confidence 34566788889999999999998 67888899999776666655432111689999999999998887776666678888
Q ss_pred EEeCc--------hhhhc-cCCCEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCC-CCCcccceEE
Q 001989 284 VVSDL--------KDIDY-KSGDVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILK-PPGELGADIV 352 (985)
Q Consensus 284 ~~v~~--------~~l~~-l~~~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~-~~~~~GaDi~ 352 (985)
+.++. +++++ +++++++|++++| |++|.+.|+++|.++||++|+++++|+ ..+.|.+. +..++|+|++
T Consensus 117 ~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~~~tG~~~~~~~i~~~~~~~~~~li~D~-a~~~~~~~~~~~~~~~d~~ 195 (373)
T cd06453 117 KVVPVDDDGQLDLEALEKLLTERTKLVAVTHVSNVLGTINPVKEIGEIAHEAGVPVLVDG-AQSAGHMPVDVQDLGCDFL 195 (373)
T ss_pred EEeecCCCCCcCHHHHHHHhcCCceEEEEeCcccccCCcCCHHHHHHHHHHcCCEEEEEh-hhhcCceeeeccccCCCEE
Confidence 88754 35666 7788999999987 789999999999999999999999953 34455442 3457899999
Q ss_pred EecC-ccccccCCCCCCcEEEEEEchhhHhcCCCceeeeee-cCCCCcceeeecccccccccccccCCCccchhHHHHHH
Q 001989 353 VGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSI-DSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANM 430 (985)
Q Consensus 353 v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~-d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~ 430 (985)
++++ |+++ +|++|++++++++++.+.+...|+.. +......+. ......+++.+|+|++ .+.++.
T Consensus 196 ~~s~~K~~~------~~g~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----~~~~~~~~~~~t~~~~---~~~al~ 262 (373)
T cd06453 196 AFSGHKMLG------PTGIGVLYGKEELLEEMPPYGGGGEMIEEVSFEETT----YADLPHKFEAGTPNIA---GAIGLG 262 (373)
T ss_pred EeccccccC------CCCcEEEEEchHHhhcCCCeecCCCccccccccccc----cCCCccccCCCCCCHH---HHHHHH
Confidence 9998 5553 25689999999999888766555321 100000011 1223445566788874 455555
Q ss_pred HHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCC--CCcceEEEecCC--HHHHHHHHHHcCceeeee----
Q 001989 431 AAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGL--PFFDTVKVKCAD--AHAIASAAYKIEMNLRVV---- 502 (985)
Q Consensus 431 aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~--~~~~~~~~~~~~--~~~v~~~L~~~GI~~~~~---- 502 (985)
+++ .++..+|++++.++..++++++++.|+++++++++.+ ...+.+.|..++ +.++.++|.++||.++..
T Consensus 263 ~al--~~l~~~g~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~gi~i~~g~~~~ 340 (373)
T cd06453 263 AAI--DYLEKIGMEAIAAHEHELTAYALERLSEIPGVRVYGDAEDRAGVVSFNLEGIHPHDVATILDQYGIAVRAGHHCA 340 (373)
T ss_pred HHH--HHHHHcCHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCccccCCeEEEEECCcCHHHHHHHHHHCCEEeccCccch
Confidence 555 6677789999999999999999999999955888742 223456666664 789999999999987421
Q ss_pred --------cCCeEEEEeccCCCHHHHHHHHHHH
Q 001989 503 --------DSNTVTASFDETTTLEDVDKLFIVF 527 (985)
Q Consensus 503 --------~~~~lris~t~~~t~edId~li~aL 527 (985)
.++.+|+|++.++|++|+|+|+++|
T Consensus 341 ~~~~~~~~~~~~iRis~~~~~t~~di~~~~~~l 373 (373)
T cd06453 341 QPLMRRLGVPGTVRASFGLYNTEEEIDALVEAL 373 (373)
T ss_pred hHHHHHhCCCCeEEEEecCCCCHHHHHHHHhhC
Confidence 1468999999999999999999875
|
This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine. |
| >PRK09295 bifunctional cysteine desulfurase/selenocysteine lyase; Validated | Back alignment and domain information |
|---|
Probab=99.93 E-value=9.8e-24 Score=245.53 Aligned_cols=314 Identities=16% Similarity=0.143 Sum_probs=214.9
Q ss_pred hhhHHHHHHHHHHHHHHHhCC-Cccc-eecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccH----HHHHHC
Q 001989 627 AQGYQEMFNNLGEWLCTITGF-DSFS-LQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNP----ATAAMC 700 (985)
Q Consensus 627 ~~G~~~~~~e~~~~la~l~G~-~~~~-~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~----~~a~~~ 700 (985)
..-..+.++++++.+++++|. +... ++.++++++... +++.+... ...++++||+++..|.+.. ..++..
T Consensus 62 ~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~~l~~---~~~~~~~~-~~~~gd~vl~~~~~~~s~~~~~~~~~~~~ 137 (406)
T PRK09295 62 SAQATEKMENVRKQAALFINARSAEELVFVRGTTEGINL---VANSWGNS-NVRAGDNIIISEMEHHANIVPWQMLCARV 137 (406)
T ss_pred HHHHHHHHHHHHHHHHHHcCcCCCCeEEEeCCHHHHHHH---HHHHhhhh-cCCCcCEEEECcchhhHHHHHHHHHHHHc
Confidence 344667788999999999997 4434 344445555433 33322100 1146789999998776542 224678
Q ss_pred CcEEEEEcCCCCCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCC
Q 001989 701 GMKIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSP 779 (985)
Q Consensus 701 G~~vv~v~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~p 779 (985)
|++++.++.+++|.+|+++|+++++ ++|++|++++| |++|.+. |+++|+++||++|++++||++|..+...+ +.
T Consensus 138 g~~v~~v~~~~~~~~d~~~l~~~i~---~~t~lv~l~~~~n~tG~~~-~~~~i~~~~~~~~~~vivD~a~~~g~~~~-~~ 212 (406)
T PRK09295 138 GAELRVIPLNPDGTLQLETLPALFD---ERTRLLAITHVSNVLGTEN-PLAEMIALAHQHGAKVLVDGAQAVMHHPV-DV 212 (406)
T ss_pred CcEEEEEecCCCCCCCHHHHHHhcC---CCcEEEEEecchhcccccC-CHHHHHHHHHHcCCEEEEEcccccCcccc-Cc
Confidence 9999999998889999999999997 78999999998 5799998 89999999999999999999996554333 34
Q ss_pred CccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCC-------CCCC-----CCCCCCCCCCCCcch
Q 001989 780 GYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTG-------GIPA-----PEKSQPLGTIAAAPW 847 (985)
Q Consensus 780 g~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~-------~~~~-----~~~~~~~~~i~s~~~ 847 (985)
..+++|++++|+||.+ |++|+|++++++++.+.+++...|++. +... ++.+.+|.++.
T Consensus 213 ~~~~~D~~~~s~~K~~------gp~G~G~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~r~e~GT~~~~---- 282 (406)
T PRK09295 213 QALDCDFYVFSGHKLY------GPTGIGILYVKEALLQEMPPWEGGGSMIATVSLTEGTTWAKAPWRFEAGTPNTG---- 282 (406)
T ss_pred hhcCCCEEEeehhhcc------CCCCcEEEEEchHhHhhCCCcccCCceeeeeecCCccccCCchhhcCCCCccHH----
Confidence 5678999999999965 334789999998877666654333211 0000 11233333322
Q ss_pred hhhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhccCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHH
Q 001989 848 GSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRL 927 (985)
Q Consensus 848 g~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L 927 (985)
...+..++++.+...|+.++.++..+++++++++|++...+...++.. ....+.+.++ +.+++++.+.|
T Consensus 283 ----~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~~~~~~~~~~~-~~~iv~~~~~------~~~~~~~~~~L 351 (406)
T PRK09295 283 ----GIIGLGAALDYVSALGLNNIAEYEQNLMHYALSQLESVPDLTLYGPQN-RLGVIAFNLG------KHHAYDVGSFL 351 (406)
T ss_pred ----HHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCC-CceEEEEEEC------CcCHHHHHHHH
Confidence 122233445555555666777788888999999997632332222211 1233445544 45678899999
Q ss_pred HHCCCccCC---CCC------CCCCEEEEeccCCCCHHHHHHHHccCChhHHHH
Q 001989 928 MDYGFHGPT---MSW------PVPGTLMIEPTESESKSWTGIVMLSSPSEKKLH 972 (985)
Q Consensus 928 ~~~Gi~~~~---~~~------p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~ 972 (985)
.++||.+.. +.. ..++.+|+|++.++|++|||+ ++++|+++.+
T Consensus 352 ~~~gI~v~~g~~c~~~~~~~~~~~~~iRiS~~~ynt~~did~--l~~~l~~i~~ 403 (406)
T PRK09295 352 DNYGIAVRTGHHCAMPLMAYYNVPAMCRASLAMYNTHEEVDR--LVAGLQRIHR 403 (406)
T ss_pred HhCCeEEeccccchHHHHHHHCCCCEEEEEccCCCCHHHHHH--HHHHHHHHHH
Confidence 999998753 211 134789999999999999999 7788877643
|
|
| >TIGR03392 FeS_syn_CsdA cysteine desulfurase, catalytic subunit CsdA | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.3e-23 Score=244.03 Aligned_cols=314 Identities=16% Similarity=0.129 Sum_probs=214.0
Q ss_pred hhHHHHHHHHHHHHHHHhCCC-ccc-eecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccH----HHHHHCC
Q 001989 628 QGYQEMFNNLGEWLCTITGFD-SFS-LQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNP----ATAAMCG 701 (985)
Q Consensus 628 ~G~~~~~~e~~~~la~l~G~~-~~~-~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~----~~a~~~G 701 (985)
.-..+.++++++.+++++|.+ ... ++.++++++...++. .+.. ....++++||+++..|.++. ..++..|
T Consensus 56 ~~~~~~~~~~r~~la~~~g~~~~~~i~~t~g~t~~l~~~~~---~~~~-~~~~~gd~Vl~~~~~~~s~~~~~~~~~~~~g 131 (398)
T TIGR03392 56 QSLTARYELARQQVARFLNAPDAENIVWTRGTTESINLVAQ---SYAR-PRLQPGDEIIVSEAEHHANLIPWLMVAQQTG 131 (398)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCCeEEEeCChHHHHHHHHH---Hhhh-ccCCCCCEEEECCcchhHHHHHHHHHHHHcC
Confidence 335567889999999999985 434 344555665533333 2210 01246789999998887642 2356789
Q ss_pred cEEEEEcCCCCCCCCHHHHHHHHHhcCCCEEEEEEEcCC-CccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCC
Q 001989 702 MKIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPS-THGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPG 780 (985)
Q Consensus 702 ~~vv~v~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~pn-~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg 780 (985)
++++.+|+++++.+|+++|+++++ ++|++|++++|+ .+|.+. |+++|+++||++|+++++|++|..+...+ +..
T Consensus 132 ~~v~~v~~~~~~~~~~~~l~~~i~---~~t~lv~i~~~~n~tG~~~-~~~~i~~~~~~~~~~~ivD~a~~~~~~~~-~~~ 206 (398)
T TIGR03392 132 AKVVKLPIGADLLPDIRQLPELLT---PRTRILALGQMSNVTGGCP-DLARAITLAHQYGAVVVVDGAQGVVHGPP-DVQ 206 (398)
T ss_pred cEEEEEecCCCCCcCHHHHHHHhc---cCceEEEEECccccccccC-CHHHHHHHHHHcCCEEEEEhhhhcCCCCC-Chh
Confidence 999999998888899999999997 789999999984 799998 89999999999999999999986443322 334
Q ss_pred ccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCC----C---C----CCCCCCCCCCCCCCcchhh
Q 001989 781 YIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTG----G---I----PAPEKSQPLGTIAAAPWGS 849 (985)
Q Consensus 781 ~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~----~---~----~~~~~~~~~~~i~s~~~g~ 849 (985)
.+++|++++|+||++ |.+|+|++++++++.+.++....+... + . ..++.+.+|.++. .
T Consensus 207 ~~~~d~~~~s~~K~~------gp~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~GT~~~~-----~ 275 (398)
T TIGR03392 207 ALDIDFYAFSGHKLY------GPTGIGVLYGKTELLEAMPPWQGGGKMLSHVSFDGFIPQAVPHRFEAGTPNIA-----G 275 (398)
T ss_pred hcCCCEEEEeccccc------CCCceEEEEEcHHHHhhCCCeecCCceEeeccccccccCCChhhccCCCCCHH-----H
Confidence 578999999999966 334799999998877666543222110 0 0 0011122333322 1
Q ss_pred hHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhccCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHH
Q 001989 850 ALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMD 929 (985)
Q Consensus 850 ~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~ 929 (985)
..++ .+.++.+...|+.++.++..++++++.+.|++..++...++... ..+.+.++ +.+.+++.++|.+
T Consensus 276 ~~a~---~~al~~l~~~g~~~i~~~~~~l~~~l~~~l~~l~g~~~~~~~~~--~i~~~~~~------~~~~~~l~~~L~~ 344 (398)
T TIGR03392 276 VIGL---SAALEWLTDIDIAAAEAWSVSLADLAEERLAQLPGFRSFRCPGS--SLLAFDFA------GVHHSDLAALLAE 344 (398)
T ss_pred HHHH---HHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCCC--cEEEEEeC------CcCHHHHHHHHHh
Confidence 1222 33444444556666677788889999999976323322221111 12334443 4677899999999
Q ss_pred CCCccCCCC---C------CCCCEEEEeccCCCCHHHHHHHHccCChhHHHHhh
Q 001989 930 YGFHGPTMS---W------PVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRL 974 (985)
Q Consensus 930 ~Gi~~~~~~---~------p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~ 974 (985)
+||.+.... . ...+.+|||++.++|++|||+ +++.|+++++.+
T Consensus 345 ~gI~v~~g~~~~~~~~~~~g~~~~iRvS~~~~~t~~ei~~--l~~~l~~~~~~~ 396 (398)
T TIGR03392 345 SGIALRAGQHCAQPLMAALGVSGTLRASFAPYNTQQDVDA--LVDAVGAALELL 396 (398)
T ss_pred CCEEEecCccchHHHHHHhCCCCEEEEEeeccCCHHHHHH--HHHHHHHHHHHh
Confidence 999875321 1 124799999999999999999 888998887654
|
Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems. |
| >TIGR01977 am_tr_V_EF2568 cysteine desulfurase family protein | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.4e-23 Score=238.52 Aligned_cols=302 Identities=15% Similarity=0.161 Sum_probs=223.4
Q ss_pred hhHHHHHHHHHHHHHHhcCCCCc-ceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEE
Q 001989 207 QGRLESLLNFQTMIADLTGLPMS-NASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVV 285 (985)
Q Consensus 207 qg~l~~i~e~q~~ia~L~g~~~~-~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~ 285 (985)
++..+.+.++++.+++++|++.. ++.+++|+|.++..++.+. + ++||+|+++...|+++..++...++..|++++.
T Consensus 40 ~~~~~~~~~~~~~la~~~~~~~~~~v~~~~g~t~al~~~~~~~-~--~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~ 116 (376)
T TIGR01977 40 LRASREVEETRQLLAKLFNAPSSAHVVFTNNATTALNIALKGL-L--KEGDHVITTPMEHNSVARPLECLKEQIGVEITI 116 (376)
T ss_pred HHHHHHHHHHHHHHHHHhCcCCCCeEEEeCCHHHHHHHHHHhc-c--CCCCEEEECcchhhHHHHHHHHHHHHcCcEEEE
Confidence 44557888999999999999754 7888899998777666553 2 378999999999999998887777777888888
Q ss_pred eCc--------hhhhc-cCCCEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCC-CCCcccceEEEe
Q 001989 286 SDL--------KDIDY-KSGDVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILK-PPGELGADIVVG 354 (985)
Q Consensus 286 v~~--------~~l~~-l~~~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~-~~~~~GaDi~v~ 354 (985)
++. +++++ +++++++|++++| |.+|.+.|+++|+++||++|++++|| ..+++|.+. ...++|+|++++
T Consensus 117 v~~~~~~~~d~~~l~~~~~~~~~~v~~~~~~n~tG~~~~~~~i~~l~~~~~~~livD-~a~~~g~~~~~~~~~~~D~~~~ 195 (376)
T TIGR01977 117 VKCDNEGLISPERIKRAIKTNTKLIVVSHASNVTGTILPIEEIGELAQENGIFFILD-AAQTAGVIPIDMTELAIDMLAF 195 (376)
T ss_pred EecCCCCCcCHHHHHHhcCCCCeEEEEECCCCCccccCCHHHHHHHHHHcCCEEEEE-hhhccCccCCCchhcCCCEEEe
Confidence 754 34666 7788999999987 77999999999999999999999994 345666553 345789999999
Q ss_pred cC-ccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHH
Q 001989 355 SA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAM 433 (985)
Q Consensus 355 s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~ 433 (985)
++ |++++| +|.|+++++++. .+.+...|+.. .+.+.+.. .+....|.+.+|.|+ ..+.++.+++
T Consensus 196 s~~K~l~~p-----~g~g~l~~~~~~--~~~~~~~~~~~----~~~~~~~~-~~~~~~r~~~~t~~~---~~~~a~~~al 260 (376)
T TIGR01977 196 TGHKGLLGP-----QGTGGLYIREGI--KLKPLKSGGTG----SHSALIDQ-PSELPDRFESGTLNT---PGIAGLNAGI 260 (376)
T ss_pred cccccccCC-----CCceEEEEcCCc--CcCceecCCCc----cccccccc-cccchhhccCCCCCH---HHHHHHHHHH
Confidence 99 666544 356788888765 22222222210 01111111 111122456788776 4555666555
Q ss_pred HHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCC--C--CcceEEEecCC--HHHHHHHHHHc-Cceeee-----
Q 001989 434 YAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGL--P--FFDTVKVKCAD--AHAIASAAYKI-EMNLRV----- 501 (985)
Q Consensus 434 ~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~--~--~~~~~~~~~~~--~~~v~~~L~~~-GI~~~~----- 501 (985)
.++...|++++.+++.++++++++.|.++++++++.+ + ....+.|..++ ..++.+.|.++ ||.++.
T Consensus 261 --~~~~~~g~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~L~~~~gi~v~~g~~~~ 338 (376)
T TIGR01977 261 --KFIEKIGIANIAKKECMLTEKLLNGLREINKVKIYGPADPANRVGVVSFTVEGIDSEEVADILDEKFDIATRTGLHCA 338 (376)
T ss_pred --HHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCCccccCCeEEEEECCCCHHHHHHHHhccCCEEEEcccccc
Confidence 6777789999999999999999999998855888742 1 23456666665 78899999987 887642
Q ss_pred ---------ecCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 502 ---------VDSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 502 ---------~~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
...+.+|++++.++|.+|||+++++|+.
T Consensus 339 ~~~~~~~g~~~~~~iRis~~~~~t~~dv~~~~~~l~~ 375 (376)
T TIGR01977 339 PLAHKTIGTFATGTIRLSLGYFNTEEEIEKLLEALSE 375 (376)
T ss_pred hHHHHHhCCCCCCeEEEecCCCCCHHHHHHHHHHHhh
Confidence 1247899999999999999999999963
|
This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulfurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N-terminus. The function of this subfamily is unknown. |
| >PRK13520 L-tyrosine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.4e-23 Score=237.06 Aligned_cols=347 Identities=15% Similarity=0.181 Sum_probs=238.9
Q ss_pred CCCHHHHHHHHHHHhcCCCccceecCCCCCCCCCcHHHHHHHHhCCccccccCCChhhHhhhHHHHHHHHHHHHHHhcCC
Q 001989 147 GLTESQMIEHMQKLASMNKVYKSFIGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGL 226 (985)
Q Consensus 147 ~~se~e~~~~~~~l~~~n~~~~~~lG~g~y~~~~p~~v~~~i~~~~~~~t~~~pyq~e~sqg~l~~i~e~q~~ia~L~g~ 226 (985)
+.+|.|++++|++++.++..+..|+|..+.+ ..|.++ +.+.+ ++.. .+..+...+++.+.+.++++++++++|+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~a~~~---~~~~-~~~~~~~~~~~~~~~~~~~~~la~~~g~ 74 (371)
T PRK13520 1 GLSEEEILEELEEYRSEDLKYERILSSMCTE-PHPIAR-KAHEM---FLET-NLGDPGLFPGTAKLEEEAVEMLGELLHL 74 (371)
T ss_pred CCCHHHHHHHHHHHHhcCCCHHHeeeeeecC-chHHHH-HHHHH---HHhc-CCCCcccCccHHHHHHHHHHHHHHHhCC
Confidence 3689999999999999998877788887632 334433 23321 1111 1222223357788889999999999999
Q ss_pred CCcceeeccchHHHHHHHHHHhh-hhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc--------hhhhc-cCC
Q 001989 227 PMSNASLLDEGTAAAEAMAMCNN-IQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL--------KDIDY-KSG 296 (985)
Q Consensus 227 ~~~~~sl~~~~ta~~ea~~~a~~-~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~--------~~l~~-l~~ 296 (985)
+..++.+++|+|.+...++.+.+ ...+++++|++++..|+++.+.++ ..|++++.++. ++|++ +++
T Consensus 75 ~~~~~~~~~ggt~a~~~a~~~~~~~~~~~~~~vl~~~~~h~s~~~~~~----~~g~~~~~v~~~~~~~~d~~~l~~~i~~ 150 (371)
T PRK13520 75 PDAYGYITSGGTEANIQAVRAARNLAKAEKPNIVVPESAHFSFDKAAD----MLGVELRRAPLDDDYRVDVKAVEDLIDD 150 (371)
T ss_pred CCCCeEEecCcHHHHHHHHHHHHhhccCCCceEEecCcchHHHHHHHH----HcCceEEEecCCCCCcCCHHHHHHHHhh
Confidence 88788888999877766654332 111257899999999999877654 35778877653 45666 777
Q ss_pred CEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCC---CC-----CCcccceEEEecCccccccCCCCC
Q 001989 297 DVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTIL---KP-----PGELGADIVVGSAQRFGVPMGYGG 367 (985)
Q Consensus 297 ~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l---~~-----~~~~GaDi~v~s~k~lg~P~~~GG 367 (985)
++++|++.++ |.+|.+.|+++|+++||++|++++||. .++.+.+ .. ...+|+|.+.+++++++.+ |+
T Consensus 151 ~~~~vi~~~~~~~tG~~~~l~~I~~l~~~~g~~livD~-a~~~~~~~~~~~~~~~~~~~~~vd~~~~s~~K~~~a---~~ 226 (371)
T PRK13520 151 NTIGIVGIAGTTELGQVDPIPELSKIALENGIFLHVDA-AFGGFVIPFLDDPPNFDFSLPGVDSITIDPHKMGLA---PI 226 (371)
T ss_pred CCEEEEEEcCCcCCcccCCHHHHHHHHHHcCCCEEEEe-cchhHHHHhhcCCCCccccCCCCceEEECCccccCc---cC
Confidence 8888877665 679999999999999999999999953 3332221 11 1246899999998666431 23
Q ss_pred CcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcchHHHHH
Q 001989 368 PHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIA 447 (985)
Q Consensus 368 P~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i~ 447 (985)
|..++++.++++.+.+... .+ |... .. + .-..||.+. ....++.++ +..++.+|++++.
T Consensus 227 ~~G~~~~~~~~~~~~l~~~----------~~-~~~~--~~-~--~~~~gt~~~---~~~~~~~~a--l~~l~~~g~~~~~ 285 (371)
T PRK13520 227 PAGGILFRDESYLDALAVD----------TP-YLTS--KK-Q--ATLTGTRSG---AGVAATYAV--MKYLGREGYRKVV 285 (371)
T ss_pred CceEEEEcCHHHHHhhccc----------Cc-cccC--CC-C--cceEeeccC---hHHHHHHHH--HhhhcHhHHHHHH
Confidence 3444555566676665310 00 1000 00 0 001244433 223333344 3677888999999
Q ss_pred HHHHHHHHHHHHHHhcCCCeEEcCCCCcceEEEecCCHHHHHHHHHHcCceeeeec-CCeEEEEeccCCCHHHHHHHHHH
Q 001989 448 QRVHGLAGTFALGLKKLGTVEVQGLPFFDTVKVKCADAHAIASAAYKIEMNLRVVD-SNTVTASFDETTTLEDVDKLFIV 526 (985)
Q Consensus 448 ~~~~~~a~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~~~L~~~GI~~~~~~-~~~lris~t~~~t~edId~li~a 526 (985)
++..+++++++++|+++| ++++..+..+.+.+..+.+.++.++|.++||.++... ++.+|+|++.++|++|||+++++
T Consensus 286 ~~~~~~~~~l~~~L~~~g-~~~~~~~~~~~v~~~~~~~~~v~~~L~~~gi~v~~~~~~~~iRis~~~~~t~edi~~~~~~ 364 (371)
T PRK13520 286 ERCMENTRWLAEELKERG-FEPVIEPVLNIVAFDDPNPDEVREKLRERGWRVSVTRCPEALRIVCMPHVTREHIENFLED 364 (371)
T ss_pred HHHHHHHHHHHHHHHhCC-CEEecCCCceEEEEecCCHHHHHHHHHHCCceeccCCCCCEEEEEEECCCCHHHHHHHHHH
Confidence 999999999999999987 8844334445566766668899999999999887643 56799999999999999999999
Q ss_pred HhC
Q 001989 527 FAG 529 (985)
Q Consensus 527 L~~ 529 (985)
|+.
T Consensus 365 l~~ 367 (371)
T PRK13520 365 LKE 367 (371)
T ss_pred HHH
Confidence 973
|
|
| >PLN02651 cysteine desulfurase | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.5e-23 Score=238.54 Aligned_cols=296 Identities=11% Similarity=0.115 Sum_probs=204.2
Q ss_pred hHHHHHHHHHHHHHHHhCCCccc-eecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHH---HHHCCcEE
Q 001989 629 GYQEMFNNLGEWLCTITGFDSFS-LQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPAT---AAMCGMKI 704 (985)
Q Consensus 629 G~~~~~~e~~~~la~l~G~~~~~-~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~---a~~~G~~v 704 (985)
...+.++++++.+++++|.+... ++.++|++++..++.++.... ..++++||+++..|+++... ++..|+++
T Consensus 40 ~~~~~~~~~r~~la~~~g~~~~~v~~t~~~t~a~~~~l~~~~~~~----~~~g~~vl~~~~~h~s~~~~~~~~~~~g~~v 115 (364)
T PLN02651 40 ESEDAVEKARAQVAALIGADPKEIIFTSGATESNNLAIKGVMHFY----KDKKKHVITTQTEHKCVLDSCRHLQQEGFEV 115 (364)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCeEEEeCCHHHHHHHHHHHHHHhc----cCCCCEEEEcccccHHHHHHHHHHHhcCCEE
Confidence 45677889999999999987644 444556666544444332211 13578999999888776444 23579999
Q ss_pred EEEcCCCCCCCCHHHHHHHHHhcCCCEEEEEEEcCC-CccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCccC
Q 001989 705 VSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPS-THGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIG 783 (985)
Q Consensus 705 v~v~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~pn-~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~g 783 (985)
+.+|++++|.+|+++++++|+ ++|++|++++++ .+|.+. |+++|+++||++|++++||++|..+...+ ++.+++
T Consensus 116 ~~v~~~~~~~~d~~~l~~~i~---~~t~lv~v~~~~n~tG~~~-~l~~I~~~~~~~g~~~~vD~a~~~g~~~~-~~~~~~ 190 (364)
T PLN02651 116 TYLPVKSDGLVDLDELAAAIR---PDTALVSVMAVNNEIGVIQ-PVEEIGELCREKKVLFHTDAAQAVGKIPV-DVDDLG 190 (364)
T ss_pred EEEccCCCCcCCHHHHHHhcC---CCcEEEEEECCCCCceecc-cHHHHHHHHHHcCCEEEEEcchhhCCccc-CcccCC
Confidence 999998889999999999997 789999999874 699998 89999999999999999999997554443 567889
Q ss_pred CcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHh
Q 001989 784 ADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMM 863 (985)
Q Consensus 784 ~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~l 863 (985)
+|++++++|||+ |++|+|+++++++....+.+...|+... .+++.+|.++.. ...+. +.+..+
T Consensus 191 ~D~~~~s~hK~~------gp~G~g~l~v~~~~~~~l~p~~~g~~~~---~~~~~GT~~~~~-----~~~l~---~al~~~ 253 (364)
T PLN02651 191 VDLMSISGHKIY------GPKGVGALYVRRRPRVRLEPLMSGGGQE---RGRRSGTENTPL-----VVGLG---AACELA 253 (364)
T ss_pred CCEEEechhhhC------CCCceEEEEEcCCCCCCCCccccCCCcc---CCccCCCccHHH-----HHHHH---HHHHHH
Confidence 999999999974 3458999999988776665444442110 112334444331 12222 334444
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHhhc---cCCeeecCC-CCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCC---
Q 001989 864 GSKGLTEASKIAILNANYMAKRLEK---HYPILFRGV-NGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPT--- 936 (985)
Q Consensus 864 g~eGl~~~~~~~~~~a~~l~~~L~~---g~~l~~~~~-~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~--- 936 (985)
.. +..++.++...+++++.++|++ ++++..+.. .....+.+.+.++ +.+.+++.++|.+ |.++.
T Consensus 254 ~~-~~~~i~~~~~~l~~~l~~~l~~~~~~~~i~~~~~~~~~~~~i~~~~~~------~~~~~~~~~~L~~--i~v~~g~~ 324 (364)
T PLN02651 254 MK-EMDYDEKHMKALRERLLNGLRAKLGGVRVNGPRDPEKRYPGTLNLSFA------YVEGESLLMGLKE--VAVSSGSA 324 (364)
T ss_pred HH-hHHHHHHHHHHHHHHHHHHHHhhCCCEEEECCCCcccCcCCEEEEEeC------CCCHHHHHHHhCC--EEEEchhh
Confidence 33 3466677888899999999874 334432111 1111223445554 5788999999965 66532
Q ss_pred CCCC-----------------CCCEEEEeccCCCCHHHHH
Q 001989 937 MSWP-----------------VPGTLMIEPTESESKSWTG 959 (985)
Q Consensus 937 ~~~p-----------------~~~~lris~t~~~t~eeId 959 (985)
|..+ ..+.+|+|++.+||++|||
T Consensus 325 c~~~~~~~~~~~~~~g~~~~~~~~~vR~S~~~~~t~~did 364 (364)
T PLN02651 325 CTSASLEPSYVLRALGVPEEMAHGSLRLGVGRFTTEEEVD 364 (364)
T ss_pred cCCCCCCcCHHHHHcCCChHHhCceEEEEcCCCCCHHHcC
Confidence 2111 1378999999999999986
|
|
| >PLN02263 serine decarboxylase | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.7e-23 Score=236.38 Aligned_cols=299 Identities=16% Similarity=0.189 Sum_probs=214.3
Q ss_pred hHHHHHHHHHHHHHHHhCCCcc---ceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEE
Q 001989 629 GYQEMFNNLGEWLCTITGFDSF---SLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIV 705 (985)
Q Consensus 629 G~~~~~~e~~~~la~l~G~~~~---~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv 705 (985)
+..++..++-+|+++++|.+.. .++.++|+++++.++.++|.+. ++..+++|+.+|.++.+++.+.|++++
T Consensus 130 ~s~~~E~~Vi~wla~L~g~p~~~~~G~vtsGGTEaNL~Al~aARe~~------~~~vvy~S~~aH~Sv~KAa~llgi~~~ 203 (470)
T PLN02263 130 HSRQFEVGVLDWFARLWEIEKNEYWGYITNCGTEGNLHGILVGREVF------PDGILYASRESHYSVFKAARMYRMECV 203 (470)
T ss_pred hHHHHHHHHHHHHHHHhCCCCCCCeEEEeCcHHHHHHHHHHHHHhhc------CCcEEEEcCCccHHHHHHHHhcCCcce
Confidence 6889999999999999999652 3556778888877777777531 344688899999999999999999999
Q ss_pred EEcCCCCCCCCHHHHHHHHHhcCCCEEEEEEEcCC-CccccccCHHHHHHHHHHcCC-----EEEEEccccccccCCC--
Q 001989 706 SVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPS-THGVYEEGIDEICKIIHDNGG-----QVYMDGANMNAQVGLT-- 777 (985)
Q Consensus 706 ~v~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~pn-~~G~i~~di~eI~~la~~~ga-----lliVD~a~~~~~~~l~-- 777 (985)
.||++++|++|+++|+++|.+...++.+|+++.++ .+|.+| ||++|+++|+++|+ |+|||||..-....+.
T Consensus 204 ~Vp~d~~g~mD~~aL~~aI~~d~~~P~iVvataGTT~~GAiD-pi~eIa~i~~~~g~~~~~iwlHVDAA~GG~~lPf~~~ 282 (470)
T PLN02263 204 KVDTLVSGEIDCADFKAKLLANKDKPAIINVNIGTTVKGAVD-DLDLVIKTLEECGFSQDRFYIHCDGALFGLMMPFVKR 282 (470)
T ss_pred EeccCCCCcCcHHHHHHHHHhCCCCcEEEEEEecCCCCcCCC-CHHHHHHHHHHcCCccCCeeEEEeccchhhHhhhccc
Confidence 99999999999999999998432235667777776 499999 99999999999997 9999998631111111
Q ss_pred CC---CccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHH
Q 001989 778 SP---GYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILP 854 (985)
Q Consensus 778 ~p---g~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~ 854 (985)
.+ +...+|.++.++|||++.|++ .|++.+++.....+.... ++... .+ ..+..+.-| ..++
T Consensus 283 ~~~~df~~~vDSIsvD~HK~l~~P~~-----cgvll~R~~~~~~~~~~~-----~Yl~~-~d---~ti~gSR~g--~~al 346 (470)
T PLN02263 283 APKVTFKKPIGSVSVSGHKFVGCPMP-----CGVQITRMEHINVLSSNV-----EYLAS-RD---ATIMGSRNG--HAPI 346 (470)
T ss_pred ccccCCCcCccEEEECCccccCCCcC-----EEEEEEehhhHhhhccCh-----HhhCC-CC---CCcCCCCCc--HHHH
Confidence 11 223489999999999987765 467888865432221100 00000 01 112222222 2246
Q ss_pred HHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCc
Q 001989 855 ISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFH 933 (985)
Q Consensus 855 ~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~ 933 (985)
..|+.|+.+|.+|+++..+++.++++++.++|++ ++.+... +....+++..+ . .+ +..+||.
T Consensus 347 ~lW~~L~~~G~~G~~~~i~~~~~~A~~l~~~l~~~g~~~~~~----p~s~~V~f~~p--------~-~~----~~~~gW~ 409 (470)
T PLN02263 347 FLWYTLNRKGYRGFQKEVQKCLRNAHYLKDRLREAGISAMLN----ELSSTVVFERP--------K-DE----EFVRRWQ 409 (470)
T ss_pred HHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEeC----CCceEEEEecC--------c-hH----HhhcceE
Confidence 6899999999999999999999999999999987 5554432 23333444422 1 11 2347998
Q ss_pred cCCCCCCCCCEEEEeccCCCCHHHHHHHHccCChhHHHHh
Q 001989 934 GPTMSWPVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHR 973 (985)
Q Consensus 934 ~~~~~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~ 973 (985)
..... +.++++++...+++-||+ |++.|++....
T Consensus 410 L~~~~----~~~Hivvmphv~~~~id~--fi~DL~~~~~~ 443 (470)
T PLN02263 410 LACQG----NIAHVVVMPSVTIEKLDY--FLKELVEKRST 443 (470)
T ss_pred EccCC----CcEEEEEcCCCCHHHHHH--HHHHHHHHHhh
Confidence 76543 579999999899999999 77777776653
|
|
| >TIGR03402 FeS_nifS cysteine desulfurase NifS | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.4e-23 Score=237.96 Aligned_cols=311 Identities=15% Similarity=0.164 Sum_probs=211.0
Q ss_pred hhHHHHHHHHHHHHHHHhCCCccc-eecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHH---HHHCCcE
Q 001989 628 QGYQEMFNNLGEWLCTITGFDSFS-LQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPAT---AAMCGMK 703 (985)
Q Consensus 628 ~G~~~~~~e~~~~la~l~G~~~~~-~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~---a~~~G~~ 703 (985)
....+.++++++++++++|.+... ++.++|++|+..++.++... ..++++||++...|+++... ++..|++
T Consensus 38 ~~~~~~~~~~r~~la~~~g~~~~~i~~t~~~t~a~~~al~~~~~~-----~~~~~~vv~~~~~~~s~~~~~~~~~~~G~~ 112 (379)
T TIGR03402 38 GEVGKAVEEAREQVAKLLGAEPDEIIFTSGGTESDNTAIKSALAA-----QPEKRHIITTAVEHPAVLSLCQHLEKQGYK 112 (379)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCeEEEeCcHHHHHHHHHHHHHHh-----cCCCCeEEEcccccHHHHHHHHHHHHcCCE
Confidence 345677889999999999987644 44556677665555443211 12457888888888766443 3347999
Q ss_pred EEEEcCCCCCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCcc
Q 001989 704 IVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYI 782 (985)
Q Consensus 704 vv~v~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~ 782 (985)
++.+|.+++|.+|+++++++++ +++++|+++++ |.+|.+. |+++|+++||++|+++++|++|..+...+ +..++
T Consensus 113 v~~v~~~~~g~~~~~~l~~~i~---~~~~lv~i~~~~n~tG~~~-~~~~I~~l~~~~g~~vivD~~~~~g~~~~-~~~~~ 187 (379)
T TIGR03402 113 VTYLPVDEEGRLDLEELRAAIT---DDTALVSVMWANNETGTIF-PIEEIGEIAKERGALFHTDAVQAVGKIPI-DLKEM 187 (379)
T ss_pred EEEEccCCCCcCCHHHHHHhcC---CCcEEEEEEcccCCeeecc-cHHHHHHHHHHcCCEEEEECccccccccc-CcccC
Confidence 9999998889999999999997 78999999987 5799998 89999999999999999999997544332 34568
Q ss_pred CCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHH
Q 001989 783 GADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAM 862 (985)
Q Consensus 783 g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~ 862 (985)
++|++++|+||++ |.+|+|++++++... +.+...|+... ...+.++.++. +. ..+. +.++.
T Consensus 188 ~~D~~~~s~~K~~------gp~G~g~l~v~~~~~--~~p~~~g~~~~---~~~~~gt~~~~----~~-~~l~---~al~~ 248 (379)
T TIGR03402 188 NIDMLSLSGHKLH------GPKGVGALYIRKGTR--FRPLLRGGHQE---RGRRAGTENVP----GI-VGLG---KAAEL 248 (379)
T ss_pred CCCEEEEcHHHcC------CCCceEEEEECCCCC--CCCcccCCccC---CCcCCCCccHH----HH-HHHH---HHHHH
Confidence 9999999999943 345899999987642 22222222110 11122333322 11 1122 22333
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCC-ceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCC---C
Q 001989 863 MGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNG-TVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPT---M 937 (985)
Q Consensus 863 lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~-~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~---~ 937 (985)
+ .+.+.+..++..+++++++++|++ ...+...++.. .....+.+.++ +.+++++.+.|.++||.+.. +
T Consensus 249 ~-~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~l~~~gI~v~~g~~c 321 (379)
T TIGR03402 249 A-TEHLEEENTRVRALRDRLEAGLLARIPDARLNGDPTKRLPNTVNISFE------YIEGEAILLLLDMEGICASSGSAC 321 (379)
T ss_pred H-HHhHHHHHHHHHHHHHHHHHHHHhhCCCEEEeCCCccCCCCEEEEEec------CCCHHHHHHhhccCCEEEEchhhc
Confidence 2 234566666778888999998874 33332223211 11112334443 45788999999999998753 2
Q ss_pred CCC-----------------CCCEEEEeccCCCCHHHHHHHHccCChhHHHHhhcc
Q 001989 938 SWP-----------------VPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRLKM 976 (985)
Q Consensus 938 ~~p-----------------~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~~~ 976 (985)
..+ ..+.+|+|++.++|++|||+ +++.|+++++.++.
T Consensus 322 ~~~~~~~~~~~~~lg~~~~~~~~~vR~S~~~~~t~~di~~--~~~~l~~~~~~~~~ 375 (379)
T TIGR03402 322 TSGSLEPSHVLRAMGVPHTAAHGSIRFSLSRYNTEEDIDY--VLEVLPPIIARLRA 375 (379)
T ss_pred CCCCCCcCHHHHHcCCChhhcCceEEEEcCCCCCHHHHHH--HHHHHHHHHHHHHh
Confidence 111 13789999999999999999 88999999887664
|
Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403. |
| >PLN02590 probable tyrosine decarboxylase | Back alignment and domain information |
|---|
Probab=99.92 E-value=3e-23 Score=244.07 Aligned_cols=382 Identities=13% Similarity=0.084 Sum_probs=250.2
Q ss_pred CCccccCCCCHHHHHHHHHHHhccccCcccccccccccccCCC---ccccccccccccccccCCCCchhhhhhHHHHHHH
Q 001989 560 THPVFNKYHTEHELLRYIHLLQSKELSLCHSMIPLGSCTMKLN---ATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNN 636 (985)
Q Consensus 560 ~~p~~~~~~se~e~~~~l~~l~~~~~~~~~~~~~lG~~t~~~~---~~~~~~~~~~~~f~~~~p~~p~e~~~G~~~~~~e 636 (985)
++| +.+.+.+++++.+.+.............|+|+-..... ...++.... .|.+.+.- +.+++..++..+
T Consensus 102 ~~P--~~g~~~~~il~~~~~~i~p~~~~~~hP~f~a~~~~~~~~~~~lgd~l~sa----~n~~~~~~-~~sPa~t~lE~~ 174 (539)
T PLN02590 102 SAP--ERPESLKELLDDVSKKIMPGITHWQSPSYFAYYASSTSVAGFLGEMLNAG----LSVVGFTW-LTSPAATELEII 174 (539)
T ss_pred CCC--CCCCCHHHHHHHHHHHHhccCCcCCCCCeeEeccCCCcHHHHHHHHHHHh----cccccCCc-ccCchhHHHHHH
Confidence 345 46678889999998866655444455677775211111 112222211 12222222 556788899999
Q ss_pred HHHHHHHHhCCCcc--------ceecCcHHHHHHHHHHHHHHHHHh-cCC--CCCCEEEEcCCCCcccHHHHHHCCc---
Q 001989 637 LGEWLCTITGFDSF--------SLQPNAGAAGEYAGLMVIRAYHKA-RGD--HHRNVCIIPVSAHGTNPATAAMCGM--- 702 (985)
Q Consensus 637 ~~~~la~l~G~~~~--------~~~~~sGa~a~~a~l~air~~~~~-~g~--~~~~~IIv~~~~Hg~~~~~a~~~G~--- 702 (985)
+.+|+++++|++.. .++.++|+++++.++.++|..... .|. .++-.|++++.+|.+..+++.+.|+
T Consensus 175 vi~wl~~l~glp~~~~~~~~~gG~~~sGgSeAnl~al~aAR~~~~~~~g~~~~~~~vvy~S~~aH~Sv~KAa~ilGlg~~ 254 (539)
T PLN02590 175 VLDWLAKLLQLPDHFLSTGNGGGVIQGTGCEAVLVVVLAARDRILKKVGKTLLPQLVVYGSDQTHSSFRKACLIGGIHEE 254 (539)
T ss_pred HHHHHHHHhCCCcccccCCCCceEEcCchHHHHHHHHHHHHHHHHhhhcccCCCCEEEEecCCchHHHHHHHHHcCCCcc
Confidence 99999999999852 355677888888888888764321 121 1233566688899999999999998
Q ss_pred EEEEEcCCC--CCCCCHHHHHHHHHhc---CCCEEEEEEEcCC-CccccccCHHHHHHHHHHcCCEEEEEccccccccCC
Q 001989 703 KIVSVGTDA--KGNINIEELRKAAEAN---RDNLSTLMVTYPS-THGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGL 776 (985)
Q Consensus 703 ~vv~v~~d~--~g~iD~e~L~~~i~~~---~~~t~~Vvv~~pn-~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l 776 (985)
+++.||+|. ++++|+++|+++|++. .....+|+.+..+ .+|.+| ||++|+++|+++|+|+|||+|+.-. ..+
T Consensus 255 ~vr~Vp~d~~~~~~md~~~L~~~I~~d~~~g~~P~~VvaTaGTT~tGaiD-pl~~Ia~i~~~~g~WlHVDaA~GG~-al~ 332 (539)
T PLN02590 255 NIRLLKTDSSTNYGMPPESLEEAISHDLAKGFIPFFICATVGTTSSAAVD-PLVPLGNIAKKYGIWLHVDAAYAGN-ACI 332 (539)
T ss_pred cEEEEeCCCCCCCcCCHHHHHHHHHHHHhcCCCcEEEEEEeCCCCCcccC-CHHHHHHHHHHhCCeEEEecchhhh-hhc
Confidence 688999984 5799999999999731 1124567777776 499999 9999999999999999999987311 111
Q ss_pred CCC-------CccCCcEEEeCCcccccccCCCCCCceEEEEEccc--cc-------CcCCCCccccCCCCCCCCCCCCCC
Q 001989 777 TSP-------GYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKH--LA-------PFLPSHPVVSTGGIPAPEKSQPLG 840 (985)
Q Consensus 777 ~~p-------g~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~--l~-------~~lp~~~~g~~~~~~~~~~~~~~~ 840 (985)
.| +-..+|.++.++|||+..|+++ |++.+++. +. +++.... ....+.... +.+.
T Consensus 333 -~~~~r~~~~Gie~ADSit~D~HK~l~~p~~c-----g~llvr~~~~l~~a~~~~~~YL~~~~-~~~~~~~d~-~d~~-- 402 (539)
T PLN02590 333 -CPEYRKFIDGIENADSFNMNAHKWLFANQTC-----SPLWVKDRYSLIDALKTNPEYLEFKV-SKKDTVVNY-KDWQ-- 402 (539)
T ss_pred -ChhhHHHhcCCccCCEEEECchhhcCcCcCE-----EEEEecCHHHHHHHhhcCHHHhCCcc-cccccCCCc-cccC--
Confidence 22 2345899999999999888654 57888853 21 1221100 000000000 0011
Q ss_pred CCCCcchhhhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc--cCCeeecCCCCceeeEEEEEecCccccCCC
Q 001989 841 TIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK--HYPILFRGVNGTVAHEFIVDLRGLKNTAGI 918 (985)
Q Consensus 841 ~i~s~~~g~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~--g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~ 918 (985)
.-++ -...++..|+.|+.+|.+|++++.++.+++++|+.+.|++ .++++.+ +.+..+++++.+ .+.
T Consensus 403 i~ls----Rr~raLklW~~lr~~G~~G~~~~i~~~~~lA~~~~~~l~~~~~fel~~~----~~l~iVcFr~~~----~~~ 470 (539)
T PLN02590 403 ISLS----RRFRSLKLWMVLRLYGSENLRNFIRDHVNLAKHFEDYVAQDPSFEVVTT----RYFSLVCFRLAP----VDG 470 (539)
T ss_pred CCCC----CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecC----CceEEEEEEecC----CCC
Confidence 1112 2234567899999999999999999999999999999986 4666532 345566666542 011
Q ss_pred C-------HHHHHHHHHHCCCc-cCCCCCCCCCEEEEecc-CCCCHHHHHHHHccCChhHHHHhh
Q 001989 919 E-------PEDVAKRLMDYGFH-GPTMSWPVPGTLMIEPT-ESESKSWTGIVMLSSPSEKKLHRL 974 (985)
Q Consensus 919 ~-------~~~v~~~L~~~Gi~-~~~~~~p~~~~lris~t-~~~t~eeId~~~~~~~l~~~~~~~ 974 (985)
+ ..++.++|.+.|.. +....+.-...||+++. ..++++|||. +++.|.+...++
T Consensus 471 ~~~~~~~ln~~l~~~l~~~G~~~vs~t~~~g~~~lR~~i~n~~T~~~dv~~--~~~~i~~~a~~~ 533 (539)
T PLN02590 471 DEDQCNERNRELLAAVNSTGKIFISHTALSGKFVLRFAVGAPLTEEKHVTE--AWQIIQKHASKF 533 (539)
T ss_pred CHHHHHHHHHHHHHHHHhCCCEEEEeeEECCEEEEEEEecCCCCCHHHHHH--HHHHHHHHHHHh
Confidence 1 24677777777765 33222221247899985 6788999999 777777765554
|
|
| >PRK10874 cysteine sulfinate desulfinase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.6e-23 Score=238.86 Aligned_cols=314 Identities=16% Similarity=0.148 Sum_probs=215.3
Q ss_pred hhHHHHHHHHHHHHHHHhCC-Cccce-ecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccH----HHHHHCC
Q 001989 628 QGYQEMFNNLGEWLCTITGF-DSFSL-QPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNP----ATAAMCG 701 (985)
Q Consensus 628 ~G~~~~~~e~~~~la~l~G~-~~~~~-~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~----~~a~~~G 701 (985)
....+.++++++.+++++|. +...+ +.+++++++..+ ++.+.. ....++++||+++..|.++. ..++..|
T Consensus 59 ~~~~~~~~~~r~~la~~~g~~~~~~i~~~~~~t~~i~~~---~~~~~~-~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g 134 (401)
T PRK10874 59 QRLTARYEAAREQVAQLLNAPDAKNIVWTRGTTESINLV---AQSYAR-PRLQPGDEIIVSEAEHHANLVPWLMVAQQTG 134 (401)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCCEEEEECCHHHHHHHH---HHHhhh-ccCCCcCEEEECCcchHHHHHHHHHHHHHhC
Confidence 45667788999999999999 44443 445556655333 333211 01146789999998876642 2346789
Q ss_pred cEEEEEcCCCCCCCCHHHHHHHHHhcCCCEEEEEEEcCC-CccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCC
Q 001989 702 MKIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPS-THGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPG 780 (985)
Q Consensus 702 ~~vv~v~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~pn-~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg 780 (985)
++++.+|.+.++.+|+++++++++ ++|++|++++|+ .+|.+. |+++|+++||++|++++||++|..+...+ +..
T Consensus 135 ~~v~~v~~~~~~~~d~~~l~~~i~---~~t~lv~i~~~~n~tG~~~-~~~~i~~l~~~~g~~~ivD~a~~~g~~~~-~~~ 209 (401)
T PRK10874 135 AKVVKLPLGADRLPDVDLLPELIT---PRTRILALGQMSNVTGGCP-DLARAITLAHQAGMVVMVDGAQGAVHFPA-DVQ 209 (401)
T ss_pred CEEEEEecCCCCcCCHHHHHHhcC---cCcEEEEEeCCcccccCcC-CHHHHHHHHHHcCCEEEEECCcccccccC-Cch
Confidence 999999998888999999999997 899999999985 699998 89999999999999999999996444332 335
Q ss_pred ccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCC----C---C----CCCCCCCCCCCCCCcchhh
Q 001989 781 YIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTG----G---I----PAPEKSQPLGTIAAAPWGS 849 (985)
Q Consensus 781 ~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~----~---~----~~~~~~~~~~~i~s~~~g~ 849 (985)
.+++|++++|+||++ |.+|+|++++++++.+.++....+.+. + . ..++.+.++.++. .
T Consensus 210 ~~~~d~~~~s~~K~~------gp~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Gt~~~~-----~ 278 (401)
T PRK10874 210 ALDIDFYAFSGHKLY------GPTGIGVLYGKSELLEAMSPWQGGGKMLTEVSFDGFTPQSAPWRFEAGTPNVA-----G 278 (401)
T ss_pred hcCCCEEEEeccccc------CCCccEEEEEchHHHhcCCCeecCCcceEeeccCccCCCCChhhccCCCcCHH-----H
Confidence 678999999999965 335789999998877666543222110 0 0 0011122222221 1
Q ss_pred hHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhccCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHH
Q 001989 850 ALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMD 929 (985)
Q Consensus 850 ~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~ 929 (985)
..++. +.+..+...|+.+..++..++++++.++|++..++...++... ..+.+.++ +.+.+++.+.|.+
T Consensus 279 ~~al~---~al~~l~~~g~~~~~~~~~~l~~~l~~~l~~~~g~~~~~~~~~--~i~~~~~~------~~~~~~~~~~L~~ 347 (401)
T PRK10874 279 VIGLS---AALEWLADIDINQAESWSRSLATLAEDALAKLPGFRSFRCQDS--SLLAFDFA------GVHHSDLVTLLAE 347 (401)
T ss_pred HHHHH---HHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCC--cEEEEEEC------CcCHHHHHHHHHH
Confidence 12222 3344444556666667778889999999976333322121111 12344554 4567899999999
Q ss_pred CCCccCCCCC---------CCCCEEEEeccCCCCHHHHHHHHccCChhHHHHhh
Q 001989 930 YGFHGPTMSW---------PVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRL 974 (985)
Q Consensus 930 ~Gi~~~~~~~---------p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~ 974 (985)
+||.+..... ...+.+|||++.++|++|||+ ++++|+++++.+
T Consensus 348 ~gI~v~~g~~~~~~~~~~~g~~~~iRiS~~~~nt~edid~--ll~al~~~~~~~ 399 (401)
T PRK10874 348 YGIALRAGQHCAQPLLAALGVTGTLRASFAPYNTQSDVDA--LVNAVDRALELL 399 (401)
T ss_pred CCcEEeccccchHHHHHHhCCCCEEEEEecccCCHHHHHH--HHHHHHHHHHHh
Confidence 9998754221 124799999999999999999 888998887754
|
|
| >PLN02855 Bifunctional selenocysteine lyase/cysteine desulfurase | Back alignment and domain information |
|---|
Probab=99.92 E-value=5e-23 Score=240.92 Aligned_cols=316 Identities=14% Similarity=0.107 Sum_probs=216.9
Q ss_pred HHHHHHHHHHHHHHHhCCCc-cc-eecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHH----HHHHCCcE
Q 001989 630 YQEMFNNLGEWLCTITGFDS-FS-LQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPA----TAAMCGMK 703 (985)
Q Consensus 630 ~~~~~~e~~~~la~l~G~~~-~~-~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~----~a~~~G~~ 703 (985)
..+.++++++.+++++|.+. .. ++.++++++.. ++++.+... ...++++||+++..|+++.. .++..|++
T Consensus 74 ~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~al~---~i~~~~~~~-~~~~gd~vl~~~~~~~s~~~~~~~~a~~~g~~ 149 (424)
T PLN02855 74 ATDAYELARKKVAAFINASTSREIVFTRNATEAIN---LVAYTWGLA-NLKPGDEVILSVAEHHSNIVPWQLVAQKTGAV 149 (424)
T ss_pred HHHHHHHHHHHHHHHcCCCCCCEEEEeCCHHHHHH---HHHHHhhhh-cCCCcCEEEECCCccHHHHHHHHHHHHHcCCE
Confidence 34567789999999999853 34 44445555543 223321000 12467899999888875432 24678999
Q ss_pred EEEEcCCCCCCCCHHHHHHHHHhcCCCEEEEEEEcCC-CccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCcc
Q 001989 704 IVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPS-THGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYI 782 (985)
Q Consensus 704 vv~v~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~pn-~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~ 782 (985)
++.+++++++.+|+++++++++ ++|++|++++++ .+|.+. |+++|+++||++|+++++|++|..+...+ +..++
T Consensus 150 v~~v~~~~~~~~~~~~l~~~i~---~~t~lv~i~~~~n~tG~~~-~~~~I~~l~~~~g~~vivD~a~~~g~~~~-~~~~~ 224 (424)
T PLN02855 150 LKFVGLTPDEVLDVEQLKELLS---EKTKLVATHHVSNVLGSIL-PVEDIVHWAHAVGAKVLVDACQSVPHMPV-DVQTL 224 (424)
T ss_pred EEEEecCCCCCcCHHHHHHHhc---cCceEEEEeCccccccccC-CHHHHHHHHHHcCCEEEEEhhhhcCCcCC-Cchhc
Confidence 9999998778899999999997 789999999984 699998 89999999999999999999996554433 34567
Q ss_pred CCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCC------C--C---CCCCCCCCCCCCCcchhhhH
Q 001989 783 GADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGG------I--P---APEKSQPLGTIAAAPWGSAL 851 (985)
Q Consensus 783 g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~------~--~---~~~~~~~~~~i~s~~~g~~~ 851 (985)
++|++++|+||.+ |++|+|++++++++.+.+++...|++.. . . ..+.+.+|.++ .
T Consensus 225 ~~d~~~~s~~K~~------gp~G~G~l~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~r~e~GT~~~--------~ 290 (424)
T PLN02855 225 GADFLVASSHKMC------GPTGIGFLWGKSDLLESMPPFLGGGEMISDVFLDHSTYAPPPSRFEAGTPAI--------G 290 (424)
T ss_pred CCCEEEeeccccc------CCCccEEEEEchhhhhcCCCEecCCCceeeeecCccccCCChhhccCCChHH--------H
Confidence 8999999999954 3447999999988776666543333210 0 0 00112222222 1
Q ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhcc--CCeeecCC--CCceeeEEEEEecCccccCCCCHHHHHHHH
Q 001989 852 ILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKH--YPILFRGV--NGTVAHEFIVDLRGLKNTAGIEPEDVAKRL 927 (985)
Q Consensus 852 ~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~g--~~l~~~~~--~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L 927 (985)
......+.+..+...|+.++.++..+++++++++|++. +++..+.+ .....+.+.+.++ +.+..++.+.|
T Consensus 291 ~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~~~g~~i~~~~~~~~~~r~~~v~~~~~------~~~~~~v~~~L 364 (424)
T PLN02855 291 EAIGLGAAIDYLSEIGMDRIHEYEVELGTYLYEKLSSVPGVRIYGPKPSEGVGRAALCAFNVE------GIHPTDLSTFL 364 (424)
T ss_pred HHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCcccccCcccEEEEEEC------CcCHHHHHHHh
Confidence 12223344555555677777888899999999999763 33321111 0111223445554 45788999999
Q ss_pred HHC-CCccCC---CCC------CCCCEEEEeccCCCCHHHHHHHHccCChhHHHHhhcc
Q 001989 928 MDY-GFHGPT---MSW------PVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRLKM 976 (985)
Q Consensus 928 ~~~-Gi~~~~---~~~------p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~~~ 976 (985)
.++ ||.+.. +.. ..++.+|||++.++|.+|||+ +++.|++++..++.
T Consensus 365 ~~~~gI~v~~g~~c~~~~~~~~g~~~~iRiS~~~ynt~~di~~--l~~~l~~~~~~~~~ 421 (424)
T PLN02855 365 DQQHGVAIRSGHHCAQPLHRYLGVNASARASLYFYNTKEEVDA--FIHALKDTIAFFSS 421 (424)
T ss_pred cccCCEEEechhhhhHHHHHHhCCCCeEEEEeccCCCHHHHHH--HHHHHHHHHHHHHh
Confidence 887 998753 111 124789999999999999999 88999998877643
|
|
| >COG0076 GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.8e-23 Score=240.65 Aligned_cols=344 Identities=19% Similarity=0.215 Sum_probs=236.8
Q ss_pred CCccccCCCCHHHHHHHHHHHhccccCccc-ccc--cccccccCCCccccccccccccccccCCCCchhhhhhHHHHHHH
Q 001989 560 THPVFNKYHTEHELLRYIHLLQSKELSLCH-SMI--PLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNN 636 (985)
Q Consensus 560 ~~p~~~~~~se~e~~~~l~~l~~~~~~~~~-~~~--~lG~~t~~~~~~~~~~~~~~~~f~~~~p~~p~e~~~G~~~~~~e 636 (985)
..| +.+..+++++.++..+..+|..+.. +.. .+++|.+...+...... ..+.+-+...+ +.++++.++..+
T Consensus 32 ~~p--~~g~p~~~v~~~l~~~~~~d~~~~~~~p~~~~~~~~~~~~~~~a~~~~---~~~~~~nl~d~-~~~p~a~~~E~~ 105 (460)
T COG0076 32 MAP--EKGEPLEEVLDELAELLIKDELYLDGHPRANLAGFCPTRVPPVAAELL---VSALNKNLGDP-DESPAAAELEER 105 (460)
T ss_pred cCC--ccCCchhhHHHHHHHHhhcccccccCCcceEEEccCCCCCHHHHHHHH---HHHHhhcCCCc-ccChhHHHHHHH
Confidence 456 5788999999999999888865544 222 23444333333222111 12223334444 667899999999
Q ss_pred HHHHHHHHhCCCc-c-ceecCcHHHHHHHHHHHHHHHHHh-c---CC--CCCCEEEEcCCCCcccHHHHHHCCcEEEEEc
Q 001989 637 LGEWLCTITGFDS-F-SLQPNAGAAGEYAGLMVIRAYHKA-R---GD--HHRNVCIIPVSAHGTNPATAAMCGMKIVSVG 708 (985)
Q Consensus 637 ~~~~la~l~G~~~-~-~~~~~sGa~a~~a~l~air~~~~~-~---g~--~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~ 708 (985)
+..|+++++|.+. . ..+..+|+++++-+++++|..... . +. ...++||+|..+|.++.+++.+.|++.+.+|
T Consensus 106 ~v~~l~~l~~~~~~~~G~~t~GgTean~lal~aar~~~~~~~~~~~~~~~~~P~ii~s~~aH~s~~Kaa~~lG~~~~~v~ 185 (460)
T COG0076 106 VVNMLSDLLGAPEEASGTFTSGGTEANLLALLAARERWRKRALAESGKPGGKPNIVCSETAHFSFEKAARYLGLGLRRVP 185 (460)
T ss_pred HHHHHHHHhCCCCCCceEEEcChHHHHHHHHHHHHHHHHHHhhhcccccCCCCeEEecCcchhHHHHHHHHhCCCceeEE
Confidence 9999999999954 2 356677888888778888765421 1 10 1234799999999999999999999999999
Q ss_pred CCC-CCCCCHHHHHHHHHhcCCCEEE--EEEEcCC-CccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCC-Cc--
Q 001989 709 TDA-KGNINIEELRKAAEANRDNLST--LMVTYPS-THGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSP-GY-- 781 (985)
Q Consensus 709 ~d~-~g~iD~e~L~~~i~~~~~~t~~--Vvv~~pn-~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~p-g~-- 781 (985)
.++ +.++|+++|+++|+ ++|.. |+.+.++ .+|.++ ||++|+++|+++|+|+|||+|..-.+..+.++ +.
T Consensus 186 ~~~~~~~id~~~l~~~i~---~~t~~g~vV~~aGtT~~G~iD-di~~ia~ia~~~~i~lHVDAA~GG~~~pf~~~~~~~~ 261 (460)
T COG0076 186 TVPTDYRIDVDALEEAID---ENTIGGVVVGTAGTTDTGSID-DIEELADIAEEYGIWLHVDAAFGGFLLPFLEPDGRWD 261 (460)
T ss_pred eccCccccCHHHHHHHHH---hhccCceEEEEecCCCCCccC-CHHHHHHHHHHcCCcEEEEccccceeecccCccchhh
Confidence 988 79999999999999 66665 8877776 599999 99999999999999999998853222222222 22
Q ss_pred ---cCCcEEEeCCcccccccCCCCCCceEEEEEccc--ccCcCC--CCccccCCCCCCCCCCCCCCCCCCcchhhhHHHH
Q 001989 782 ---IGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKH--LAPFLP--SHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILP 854 (985)
Q Consensus 782 ---~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~--l~~~lp--~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~ 854 (985)
.++|.++.|+||++..|+ ++|+++.++. +.+.+. ..+.+.+ + .....+.+++.| ..++
T Consensus 262 f~l~~vdSIt~d~HK~g~aP~-----~~G~il~rd~e~l~~~~~~~~~yl~~~-~-------~~~~ti~~sr~~--~~~~ 326 (460)
T COG0076 262 FGLEGVDSITVDGHKYGLAPI-----GCGVVLFRDEEALRRILIFADYYLPGG-G-------IPNFTILGSRPG--RQAL 326 (460)
T ss_pred cCCCCceEEEECcccccCCCC-----CceEEEEECHHHhhhhhhcccccCCCC-C-------cCceeEeeccch--HHHH
Confidence 268999999999987764 5667887754 332211 1111100 0 001112222222 2456
Q ss_pred HHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc-c-CCeeecCCCCceeeEEEEEecCccccCCCC-HHHHHHHHHHCC
Q 001989 855 ISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK-H-YPILFRGVNGTVAHEFIVDLRGLKNTAGIE-PEDVAKRLMDYG 931 (985)
Q Consensus 855 ~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g-~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~-~~~v~~~L~~~G 931 (985)
+.|+.|+.+|.+||+++.++.+++++|++++|++ + ++++.. +..+.++++.++ ..+ ..+..+++.+.|
T Consensus 327 ~~~~~l~~lG~eGy~~l~~~~~~~a~~la~~l~~~~~~e~~~~----p~l~~V~fr~~~-----~~~~~~~~~~~~~~~g 397 (460)
T COG0076 327 ALYANLRRLGREGYRKLLDRTLELARYLAEELEKLGDFELVNE----PELPIVAFRLKD-----DEDTLADLSERLDRRG 397 (460)
T ss_pred HHHHHHHHhCHhHHHHHHHHHHHHHHHHHHHHHhCCCcEeecC----CccceEEEEcCC-----cccchhchHHHHHhcC
Confidence 7899999999999999999999999999999987 4 777542 345555666531 112 556777788889
Q ss_pred CccCCC
Q 001989 932 FHGPTM 937 (985)
Q Consensus 932 i~~~~~ 937 (985)
|.++..
T Consensus 398 w~v~~~ 403 (460)
T COG0076 398 WQVPAQ 403 (460)
T ss_pred ceeecc
Confidence 988653
|
|
| >PF00266 Aminotran_5: Aminotransferase class-V; InterPro: IPR000192 Aminotransferases share certain mechanistic features with other pyridoxal- phosphate dependent enzymes, such as the covalent binding of the pyridoxal- phosphate group to a lysine residue | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.9e-23 Score=236.14 Aligned_cols=303 Identities=18% Similarity=0.218 Sum_probs=213.8
Q ss_pred hhHHHHHHHHHHHHHHHhCCCc-cc-eecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHH----HHHCC
Q 001989 628 QGYQEMFNNLGEWLCTITGFDS-FS-LQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPAT----AAMCG 701 (985)
Q Consensus 628 ~G~~~~~~e~~~~la~l~G~~~-~~-~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~----a~~~G 701 (985)
....++++++++.+++++|++. .. ++..+++.+...++..+... ..++++|++++..|.++... ++..|
T Consensus 39 ~~~~~~~~~~r~~la~~lg~~~~~~v~~~~~~t~a~~~~~~~l~~~-----~~~g~~vl~~~~~~~s~~~~~~~~~~~~g 113 (371)
T PF00266_consen 39 REFAEILEEAREALAKLLGAPPDEEVVFTSNGTEALNAVASSLLNP-----LKPGDEVLVTSNEHPSNRYPWEEIAKRKG 113 (371)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSTTEEEEEESSHHHHHHHHHHHHHHH-----GTTTCEEEEEESSHHHHHHHHHHHHHHTT
T ss_pred hhhhHHHHHHHHHHHHhcCCccccccccccccchhhhhhhhccccc-----cccccccccccccccccccccccccccch
Confidence 4566788899999999999988 54 44455665665444444211 13678999988877776522 34789
Q ss_pred cEEEEEcCCCCCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCC
Q 001989 702 MKIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPG 780 (985)
Q Consensus 702 ~~vv~v~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg 780 (985)
++++.++.+.++.+|+++++++|+ +++++|++++. +.+|++. |+++|+++||++|++++||++|+++...+ +..
T Consensus 114 ~~v~~i~~~~~~~~~~~~~~~~l~---~~~~lv~~~~~~~~tG~~~-pi~~I~~~~~~~~~~~~vD~~~~~g~~~i-d~~ 188 (371)
T PF00266_consen 114 AEVRVIPADPGGSLDLEDLEEALN---PDTRLVSISHVENSTGVRN-PIEEIAKLAHEYGALLVVDAAQSAGCVPI-DLD 188 (371)
T ss_dssp EEEEEEEEGTTSSCSHHHHHHHHH---TTESEEEEESBETTTTBBS-SHHHHHHHHHHTTSEEEEE-TTTTTTSS---TT
T ss_pred hhhccccccccchhhhhhhhhhhc---cccceEEeecccccccEEe-eeceehhhhhccCCceeEechhccccccc-ccc
Confidence 999999998889999999999998 89999999986 5699998 89999999999999999999997666554 567
Q ss_pred ccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccC-CCC----------CCCCCCCCCCCCCCcchhh
Q 001989 781 YIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVST-GGI----------PAPEKSQPLGTIAAAPWGS 849 (985)
Q Consensus 781 ~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~-~~~----------~~~~~~~~~~~i~s~~~g~ 849 (985)
++++|++++|+|| |+ |+||+|++++++++...+.+...++. .+. ..++.+.+|.++.
T Consensus 189 ~~~~D~~~~s~~K-l~-----gp~G~g~l~v~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~~~------ 256 (371)
T PF00266_consen 189 ELGADFLVFSSHK-LG-----GPPGLGFLYVRPEAIERLRPAKPGGGYLDFPSLQEYGLADDARRFEGGTPNVP------ 256 (371)
T ss_dssp TTTESEEEEESTS-TT-----SSSTEEEEEEEHHHHHHHHTSSSSSSTTTHHHHHHHCHHSTTTGSSSSS--HH------
T ss_pred ccccceeeecccc-cC-----CCCchhhheehhhhhhccccccccccccccccchhcccccccccccccceeee------
Confidence 8899999999999 74 55799999999876655432222221 000 0011122222221
Q ss_pred hHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhccCCeeecCC--CCceeeEEEEEecCccccCCCCHHHHHHHH
Q 001989 850 ALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGV--NGTVAHEFIVDLRGLKNTAGIEPEDVAKRL 927 (985)
Q Consensus 850 ~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~g~~l~~~~~--~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L 927 (985)
...+...++..+...|++++.++..++++++.+.|++...+...++ .......+.+.++ +.+..++.+.|
T Consensus 257 --~~~~l~~al~~~~~~g~~~i~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~------~~~~~~~~~~L 328 (371)
T PF00266_consen 257 --AIYALNEALKLLEEIGIERIRERIRELAEYLREALEELPGIEVLGPDDEPRRPSIVSFNLP------GSDADDVVKYL 328 (371)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTEEESSSSCGGBGTTEEEEEET------TSSHHHHHHHH
T ss_pred --hhhhHHHHHhhhhccccccchhhhhhHHHHHHhhhhcCCceeEeeecccccccceEEEeec------CCCHHHHHHHH
Confidence 1222234566666778888888999999999999987434433221 1112223455554 57889999999
Q ss_pred HHCCCccCC---CCCC------CCCEEEEeccCCCCHHHHHH
Q 001989 928 MDYGFHGPT---MSWP------VPGTLMIEPTESESKSWTGI 960 (985)
Q Consensus 928 ~~~Gi~~~~---~~~p------~~~~lris~t~~~t~eeId~ 960 (985)
.++||.+.. +..| ..+.+|||++.++|+||||+
T Consensus 329 ~~~~I~~~~G~~~~~~~~~~~~~~~~iRvS~~~~nt~~dv~~ 370 (371)
T PF00266_consen 329 EERGIAVSTGSACAGPSLDILGMGGVIRVSLHYYNTEEDVDR 370 (371)
T ss_dssp HHHTEEEEESTTTCHHHHHHHHTTTEEEEE-GTTSSHHHHHH
T ss_pred hhcCEEEeccCcccHHHHHHhCCCCEEEEeccCCCCHHHHhh
Confidence 999998753 2111 24899999999999999998
|
On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. This entry represents the class V aminotransferases and the related, though functionally distinct, cysteine desulfurases.; GO: 0008152 metabolic process; PDB: 3FFR_A 1N2T_B 1ELQ_A 1N31_A 1ELU_B 1QZ9_A 1VJO_A 3ISL_B 1BJO_B 1BJN_B .... |
| >TIGR01976 am_tr_V_VC1184 cysteine desulfurase family protein, VC1184 subfamily | Back alignment and domain information |
|---|
Probab=99.92 E-value=9.4e-23 Score=236.65 Aligned_cols=306 Identities=16% Similarity=0.140 Sum_probs=205.2
Q ss_pred hhhHHHHHHHHHHHHHHHhCCCccceec-CcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccH----HHHHHCC
Q 001989 627 AQGYQEMFNNLGEWLCTITGFDSFSLQP-NAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNP----ATAAMCG 701 (985)
Q Consensus 627 ~~G~~~~~~e~~~~la~l~G~~~~~~~~-~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~----~~a~~~G 701 (985)
..+..+.++++++.+++++|.+...+.. ++++++...+..++.. ..+++++||+++..|.++. ..++..|
T Consensus 55 ~~~~~~~~~~l~~~ia~~~~~~~~~v~~~~~~t~~l~~~~~~~~~-----~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g 129 (397)
T TIGR01976 55 SRRADQVVDDAREAVADLLNADPPEVVFGANATSLTFLLSRAISR-----RWGPGDEVIVTRLDHEANISPWLQAAERAG 129 (397)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCeEEEeCCHHHHHHHHHHHHHh-----cCCCCCEEEEcCCchHhHHHHHHHHHHhcC
Confidence 3566778899999999999987644433 4444443222222211 0146789999988887653 2356789
Q ss_pred cEEEEEcCCC-CCCCCHHHHHHHHHhcCCCEEEEEEEcCC-CccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCC
Q 001989 702 MKIVSVGTDA-KGNINIEELRKAAEANRDNLSTLMVTYPS-THGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSP 779 (985)
Q Consensus 702 ~~vv~v~~d~-~g~iD~e~L~~~i~~~~~~t~~Vvv~~pn-~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~p 779 (985)
++++.++.++ ++.+|+++++++++ ++|++|++++|+ .+|.+. |+++|+++||++|+++++|++|..+... .+.
T Consensus 130 ~~~~~~~~~~~~~~~~~~~l~~~i~---~~~~lv~i~~~~n~tG~~~-~~~~i~~~~~~~~~~~ivD~a~~~~~~~-~~~ 204 (397)
T TIGR01976 130 AKVKWARVDEATGELHPDDLASLLS---PRTRLVAVTAASNTLGSIV-DLAAITELVHAAGALVVVDAVHYAPHGL-IDV 204 (397)
T ss_pred CEEEEEeccccCCCcCHHHHHHhcC---CCceEEEEeCCCCCCCccC-CHHHHHHHHHHcCCEEEEehhhhccccC-CCH
Confidence 9999999876 68999999999997 789999999984 699998 8999999999999999999998644332 244
Q ss_pred CccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHH
Q 001989 780 GYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTY 859 (985)
Q Consensus 780 g~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~ 859 (985)
.++++|++++++||+| ||++|++++++++.+.+......+.......+.+.++.++ +....+..|..+
T Consensus 205 ~~~~~d~~~~s~~K~~-------g~~~G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~gt~~~-----~~~~~l~~al~~ 272 (397)
T TIGR01976 205 QATGADFLTCSAYKFF-------GPHMGILWGRPELLMNLPPYKLTFSYDTGPERFELGTPQY-----ELLAGVVAAVDY 272 (397)
T ss_pred HHcCCCEEEEechhhc-------CCceEEEEEcHHHHhhCCCccccCccCCCcchhcCCCCCH-----HHHHHHHHHHHH
Confidence 5678999999999997 3668999999876655543211110000000112222222 122333444455
Q ss_pred HHHhcH-----------HHHHHHHHHHHHHHHHHHHHhhc-c-CCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHH
Q 001989 860 IAMMGS-----------KGLTEASKIAILNANYMAKRLEK-H-YPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKR 926 (985)
Q Consensus 860 l~~lg~-----------eGl~~~~~~~~~~a~~l~~~L~~-g-~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~ 926 (985)
+..+|. +++++..++..+.+++++++|++ + +++....+.....+.+.+.++ +.+..++.++
T Consensus 273 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~l~~~ 346 (397)
T TIGR01976 273 LAGLGESANGSRRERLVASFQAIDAYENRLAEYLLVGLSDLPGVTLYGVARLAARVPTVSFTVH------GLPPQRVVRR 346 (397)
T ss_pred HHHhCcccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCccCCCceEEEEeC------CcCHHHHHHH
Confidence 555542 13556666778889999999986 2 444321111112233444443 4567889999
Q ss_pred HHHCCCccCCCC-C----------C-CCCEEEEeccCCCCHHHHHH
Q 001989 927 LMDYGFHGPTMS-W----------P-VPGTLMIEPTESESKSWTGI 960 (985)
Q Consensus 927 L~~~Gi~~~~~~-~----------p-~~~~lris~t~~~t~eeId~ 960 (985)
|.++||.+.... + + ..+.+|||++.++|++|||+
T Consensus 347 L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~ 392 (397)
T TIGR01976 347 LADQGIDAWAGHFYAVRLLRRLGLNDEGGVVRVGLAHYNTAEEVDR 392 (397)
T ss_pred HHHCCeEEEeCccchHHHHHHhCCCCCCCeEEEEeeccCCHHHHHH
Confidence 999999986431 1 1 13689999999999999999
|
This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family (pfam00266). The most closely related characterized proteins are active as cysteine desulfurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown, but seems unlike to be as an aminotransferase. |
| >PRK02948 cysteine desulfurase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.7e-22 Score=233.10 Aligned_cols=310 Identities=15% Similarity=0.167 Sum_probs=212.0
Q ss_pred hHHHHHHHHHHHHHHHhCCCcccee-cCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHH---HHHCCcEE
Q 001989 629 GYQEMFNNLGEWLCTITGFDSFSLQ-PNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPAT---AAMCGMKI 704 (985)
Q Consensus 629 G~~~~~~e~~~~la~l~G~~~~~~~-~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~---a~~~G~~v 704 (985)
...+.++++++.+++++|.+...+. .+++++++..++.++.. .. ..++++|+++...|+++..+ ++..|+++
T Consensus 40 ~~~~~~~~~r~~la~~~g~~~~~i~~~~g~t~a~~~~~~~~~~---~~-~~~g~~vv~~~~~h~s~~~~~~~~~~~g~~v 115 (381)
T PRK02948 40 TASSLLQVCRKTFAEMIGGEEQGIYFTSGGTESNYLAIQSLLN---AL-PQNKKHIITTPMEHASIHSYFQSLESQGYTV 115 (381)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCeEEEeCcHHHHHHHHHHHHHH---hc-cCCCCEEEECCcccHHHHHHHHHHHhCCCEE
Confidence 3456788999999999998765544 44556665444433321 10 12567899998888877654 45679999
Q ss_pred EEEcCCCCCCCCHHHHHHHHHhcCCCEEEEEEEcCC-CccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCccC
Q 001989 705 VSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPS-THGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIG 783 (985)
Q Consensus 705 v~v~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~pn-~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~g 783 (985)
+.+|++++|.+|+++|+++++ +++++|++++|+ .+|.+. |+++|.++|+++|++++||++|..+...+ ...+++
T Consensus 116 ~~v~~~~~~~~d~~~l~~~l~---~~~~lv~~~~~~n~tG~~~-~~~~I~~l~~~~~~~vivD~~~~~g~~~~-~~~~~~ 190 (381)
T PRK02948 116 TEIPVDKSGLIRLVDLERAIT---PDTVLASIQHANSEIGTIQ-PIAEIGALLKKYNVLFHSDCVQTFGKLPI-DVFEMG 190 (381)
T ss_pred EEEeeCCCCCCCHHHHHHhcC---CCCEEEEEECCcCCcEeeh-hHHHHHHHHHHcCCEEEEEChhhcccccc-CcccCC
Confidence 999998889999999999997 788999999985 799998 89999999999999999999886543332 345678
Q ss_pred CcEEEeCCcccccccCCCCCCceEEEEEccccc--CcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHH
Q 001989 784 ADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLA--PFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIA 861 (985)
Q Consensus 784 ~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~--~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~ 861 (985)
+|+++.++||++ |.+|+|++++++++. +..++. .. ..+.+.++.++. ...++.+.+.
T Consensus 191 ~d~~~~s~~K~~------gp~G~G~l~~~~~~~~~~~~~~~----~~---~~~~~~~t~~~~--------~~~a~~~al~ 249 (381)
T PRK02948 191 IDSLSVSAHKIY------GPKGVGAVYINPQVRWKPVFPGT----TH---EKGFRPGTVNVP--------GIAAFLTAAE 249 (381)
T ss_pred CCEEEecHHhcC------CCCcEEEEEEcCCCCCCCcccCC----CC---CCCcCCCCccHH--------HHHHHHHHHH
Confidence 999999999976 345799999987641 111110 00 000111222221 1222223344
Q ss_pred HhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCcee-eEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCC-
Q 001989 862 MMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVA-HEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMS- 938 (985)
Q Consensus 862 ~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~-~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~- 938 (985)
.+. +++.+..++..++++++.++|++ ++++...+...... ..+.+.++ +.+..++...|.++||.++...
T Consensus 250 ~~~-~~~~~~~~~~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~i~~~~~~------~~~~~~~~~~l~~~gI~v~~g~~ 322 (381)
T PRK02948 250 NIL-KNMQEESLRFKELRSYFLEQIQTLPLPIEVEGHSTSCLPHIIGVTIK------GIEGQYTMLECNRRGIAISTGSA 322 (381)
T ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHhcCCCCEEEeCCCccCcCCEEEEEeC------CCCHHHHHHhcccCCEEEEchHh
Confidence 332 35667777888999999999987 55554322111111 11222332 4567888889989999976311
Q ss_pred ----C--C-------------CCCEEEEeccCCCCHHHHHHHHccCChhHHHHhhccC
Q 001989 939 ----W--P-------------VPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRLKMG 977 (985)
Q Consensus 939 ----~--p-------------~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~~~~ 977 (985)
+ | ..+.+|||++.++|++|+|+ +++.|+++++.+-.|
T Consensus 323 c~~~~~~p~~~~~~~~~~~~~~~~~lRis~~~~~t~~di~~--l~~~l~~~~~~~~~~ 378 (381)
T PRK02948 323 CQVGKQEPSKTMLAIGKTYEEAKQFVRFSFGQQTTKDQIDT--TIHALETIGNQFYRG 378 (381)
T ss_pred cCCCCCCCCHHHHHcCCChHHhCceEEEEcCCCCCHHHHHH--HHHHHHHHHHHHhcc
Confidence 1 1 13689999999999999999 889999988766544
|
|
| >TIGR01979 sufS cysteine desulfurases, SufS subfamily | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.2e-22 Score=236.22 Aligned_cols=314 Identities=16% Similarity=0.141 Sum_probs=213.3
Q ss_pred HHHHHHHHHHHHHHHhCCC-ccc-eecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccH----HHHHHCCcE
Q 001989 630 YQEMFNNLGEWLCTITGFD-SFS-LQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNP----ATAAMCGMK 703 (985)
Q Consensus 630 ~~~~~~e~~~~la~l~G~~-~~~-~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~----~~a~~~G~~ 703 (985)
..+.++++++.+++++|.+ ... ++.++++++...++.++. .. ...++++||+++..|.++. ..++..|++
T Consensus 60 ~~~~~~~~r~~ia~~~~~~~~~~v~~~~g~t~~l~~~~~~~~---~~-~~~~g~~vl~~~~~~~s~~~~~~~~~~~~g~~ 135 (403)
T TIGR01979 60 ATEAYEAVREKVAKFINAASDEEIVFTRGTTESINLVAYSWG---DS-NLKAGDEIVISEMEHHANIVPWQLLAERTGAT 135 (403)
T ss_pred HHHHHHHHHHHHHHHhCcCCCCeEEEeCCHHHHHHHHHHHhh---hh-cCCCCCEEEECcchhhHHHHHHHHHHHhcCcE
Confidence 4456788999999999997 333 444555555433332221 00 1136789999998887653 234578999
Q ss_pred EEEEcCCCCCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCcc
Q 001989 704 IVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYI 782 (985)
Q Consensus 704 vv~v~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~ 782 (985)
++.++++++|.+|+++++++++ ++|++|++++| |.+|.+. |+++|+++||++|+++++|++|..+...+ +...+
T Consensus 136 ~~~v~~~~~~~~~~~~l~~~i~---~~~~lv~~~~~~~~tG~~~-~~~~i~~~~~~~~~~~ivD~a~~~g~~~~-~~~~~ 210 (403)
T TIGR01979 136 LKFIPLDDDGTLDLDDLEKLLT---EKTKLVAITHVSNVLGTVN-PVEEIAKLAHQVGAKVLVDGAQAVPHMPV-DVQAL 210 (403)
T ss_pred EEEEecCCCCCCCHHHHHHHhc---cCCeEEEEEcccccccccC-CHHHHHHHHHHcCCEEEEEchhhcCcccc-Ccccc
Confidence 9999998889999999999997 78999999998 4699998 89999999999999999999986443322 33567
Q ss_pred CCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCC-CCC-----C-----CCCCCCCCCCCCcchhhhH
Q 001989 783 GADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTG-GIP-----A-----PEKSQPLGTIAAAPWGSAL 851 (985)
Q Consensus 783 g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~-~~~-----~-----~~~~~~~~~i~s~~~g~~~ 851 (985)
++|++++|+||++ |++|+|++++++++.+.++....|+.. +.. . ++.+.++.+ ..
T Consensus 211 ~~d~~~~s~~K~~------gp~G~g~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~--------~~ 276 (403)
T TIGR01979 211 DCDFYVFSGHKMY------GPTGIGVLYGKEELLEQMPPFLGGGEMIAEVSFEETTYNEAPHKFEAGTPN--------IA 276 (403)
T ss_pred CCCEEEEeccccc------CCCCceEEEEchHHHhcCCCeecCCCceeecccCccccCCChhhcCCCCcc--------HH
Confidence 8999999999976 335789999998776666533222210 000 0 001111111 11
Q ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc--cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHH
Q 001989 852 ILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK--HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMD 929 (985)
Q Consensus 852 ~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~--g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~ 929 (985)
.+.+.++.++.+...|+.++.++..++++++.++|++ ++++..+.......+.+.+.++ +.+..++.+.|.+
T Consensus 277 ~~~al~~al~~~~~~g~~~~~~~~~~l~~~l~~~l~~~~g~~~~~~~~~~~~~~~v~~~~~------~~~~~~~~~~L~~ 350 (403)
T TIGR01979 277 GVIGLGAAIDYLEAIGLENIEAHEHELTAYALERLGEIPGLRIYGPRDAEDRGGIISFNVE------GVHPHDVGTILDE 350 (403)
T ss_pred HHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCccccCceEEEEeC------CcCHHHHHHHHhh
Confidence 2223344555555556677778888999999999976 3444221111111223445554 4567889999999
Q ss_pred CCCccCC---CC------CCCCCEEEEeccCCCCHHHHHHHHccCChhHHHHhh
Q 001989 930 YGFHGPT---MS------WPVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRL 974 (985)
Q Consensus 930 ~Gi~~~~---~~------~p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~ 974 (985)
+||.+.. +. +..++++|||++.++|++||++ +++.|+++++.+
T Consensus 351 ~gI~v~~g~~~~~~~~~~~~~~~~iRiS~~~~~t~~di~~--l~~~l~~~~~~~ 402 (403)
T TIGR01979 351 EGIAVRSGHHCAQPLMRRFGVPATCRASFYIYNTEEDIDA--LVEALKKVRKFF 402 (403)
T ss_pred CCEEEcchhhhhHHHHHHhCCCCEEEEEeccCCCHHHHHH--HHHHHHHHHHHh
Confidence 9998753 11 1125789999999999999999 888888876643
|
This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved. |
| >cd06453 SufS_like Cysteine desulfurase (SufS)-like | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.5e-22 Score=231.08 Aligned_cols=309 Identities=18% Similarity=0.179 Sum_probs=210.2
Q ss_pred hhHHHHHHHHHHHHHHHhCCC-ccc-eecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccH----HHHHHCC
Q 001989 628 QGYQEMFNNLGEWLCTITGFD-SFS-LQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNP----ATAAMCG 701 (985)
Q Consensus 628 ~G~~~~~~e~~~~la~l~G~~-~~~-~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~----~~a~~~G 701 (985)
+...+.+.++++.+++++|.+ ... ++.+++++|...++.++. . +..++++||+++..|+++. ..++..|
T Consensus 39 ~~~~~~~~~~~~~la~~~~~~~~~~v~~~~g~t~a~~~~~~~l~---~--~~~~g~~vl~~~~~~~~~~~~~~~~~~~~g 113 (373)
T cd06453 39 ARATDAYEAAREKVARFINAPSPDEIIFTRNTTEAINLVAYGLG---R--ANKPGDEIVTSVMEHHSNIVPWQQLAERTG 113 (373)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCCeEEEeCCHHHHHHHHHHHhh---h--cCCCCCEEEECcchhHHHHHHHHHHHhhcC
Confidence 445667788999999999988 433 445556665543333332 1 0016789999988887642 2245779
Q ss_pred cEEEEEcCCCCCCCCHHHHHHHHHhcCCCEEEEEEEcCC-CccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCC
Q 001989 702 MKIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPS-THGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPG 780 (985)
Q Consensus 702 ~~vv~v~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~pn-~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg 780 (985)
++++.++.++++.+|+++|+++++ +++++|++++|+ ++|.+. |+++|.++|+++|+++++|+++..+...+ ...
T Consensus 114 ~~~~~v~~~~~~~~d~~~l~~~l~---~~~~~v~~~~~~~~tG~~~-~~~~i~~~~~~~~~~li~D~a~~~~~~~~-~~~ 188 (373)
T cd06453 114 AKLKVVPVDDDGQLDLEALEKLLT---ERTKLVAVTHVSNVLGTIN-PVKEIGEIAHEAGVPVLVDGAQSAGHMPV-DVQ 188 (373)
T ss_pred cEEEEeecCCCCCcCHHHHHHHhc---CCceEEEEeCcccccCCcC-CHHHHHHHHHHcCCEEEEEhhhhcCceee-ecc
Confidence 999999998889999999999997 689999999984 699998 89999999999999999999985333221 234
Q ss_pred ccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCC-CC-----CCCCC-CCCCCCCCCcchhhhHHH
Q 001989 781 YIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTG-GI-----PAPEK-SQPLGTIAAAPWGSALIL 853 (985)
Q Consensus 781 ~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~-~~-----~~~~~-~~~~~~i~s~~~g~~~~~ 853 (985)
.+++|++++|+||+|+ ++|+|++++++++.+.+.....|+.. +. ..+.. ...+ ...+ + +...+
T Consensus 189 ~~~~d~~~~s~~K~~~------~~g~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~t-~--~~~~~ 258 (373)
T cd06453 189 DLGCDFLAFSGHKMLG------PTGIGVLYGKEELLEEMPPYGGGGEMIEEVSFEETTYADLPHKF-EAGT-P--NIAGA 258 (373)
T ss_pred ccCCCEEEeccccccC------CCCcEEEEEchHHhhcCCCeecCCCccccccccccccCCCcccc-CCCC-C--CHHHH
Confidence 6789999999999984 47889999998776655433222110 00 00000 0000 0001 1 11223
Q ss_pred HHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc--cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCC
Q 001989 854 PISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK--HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYG 931 (985)
Q Consensus 854 ~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~--g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~G 931 (985)
.+.++.+..+..+|++++.++..++++++.+.|++ ++++.. .+ ....+.+.+.++ +.+..++.++|.++|
T Consensus 259 ~al~~al~~l~~~g~~~~~~~~~~~~~~l~~~l~~~~~~~~~~-~~-~~~~~~~~~~~~------~~~~~~i~~~l~~~g 330 (373)
T cd06453 259 IGLGAAIDYLEKIGMEAIAAHEHELTAYALERLSEIPGVRVYG-DA-EDRAGVVSFNLE------GIHPHDVATILDQYG 330 (373)
T ss_pred HHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHhcCCCeEEeC-Cc-cccCCeEEEEEC------CcCHHHHHHHHHHCC
Confidence 34456677777778888888888999999999986 334431 11 112223455543 357789999999999
Q ss_pred CccCCCC---------CCCCCEEEEeccCCCCHHHHHHHHccCC
Q 001989 932 FHGPTMS---------WPVPGTLMIEPTESESKSWTGIVMLSSP 966 (985)
Q Consensus 932 i~~~~~~---------~p~~~~lris~t~~~t~eeId~~~~~~~ 966 (985)
|.+.... ....+++|||++.++|.+|||+ ++++
T Consensus 331 i~i~~g~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~--~~~~ 372 (373)
T cd06453 331 IAVRAGHHCAQPLMRRLGVPGTVRASFGLYNTEEEIDA--LVEA 372 (373)
T ss_pred EEeccCccchhHHHHHhCCCCeEEEEecCCCCHHHHHH--HHhh
Confidence 9875311 1125799999999999999999 5444
|
This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine. |
| >KOG1383 consensus Glutamate decarboxylase/sphingosine phosphate lyase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.4e-22 Score=222.58 Aligned_cols=378 Identities=15% Similarity=0.194 Sum_probs=266.0
Q ss_pred CCCccccCCCCHHHHHHHHHHHhccccCcccccccccccccCCCc--cccccccccccccccCCCCchhhhhhHHHHHHH
Q 001989 559 LTHPVFNKYHTEHELLRYIHLLQSKELSLCHSMIPLGSCTMKLNA--TTEMMPVTWPSFANIHPFAPADQAQGYQEMFNN 636 (985)
Q Consensus 559 ~~~p~~~~~~se~e~~~~l~~l~~~~~~~~~~~~~lG~~t~~~~~--~~~~~~~~~~~f~~~~p~~p~e~~~G~~~~~~e 636 (985)
-++| ..+++.+++++.+++....|-.+..+.. ++.++... ..+........ ++|.++ +.+++..++..+
T Consensus 54 ~~lP--~~gl~~d~v~~~i~~~~~ld~~~~~~~v---S~~v~~~~~~~~~l~~~~~~k---~N~l~~-d~fp~~~~~e~~ 124 (491)
T KOG1383|consen 54 FTLP--SKGLPKDAVLELINDELMLDGNPRLGLA---SGVVYWGEPELDKLIMEAYNK---FNPLHP-DEFPVVRKLEAE 124 (491)
T ss_pred ecCC--CCCCCHHHHHHHHHHHhccCCCcccCee---eEEEecCCcchhhHHHHHHhh---cCccCc-cccchhHHHHHH
Confidence 4688 6899999999999988777644433322 22222221 12222212222 477777 889999999999
Q ss_pred HHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHh----cCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcCCC-
Q 001989 637 LGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKA----RGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDA- 711 (985)
Q Consensus 637 ~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~----~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~d~- 711 (985)
+..|+|.+++.+...+.. .++.+.++++++.+.|+.. +|. .+++|+++.+.|..+.++++.++++++.||+++
T Consensus 125 ~Vnm~~~L~~~~~~~~g~-~t~G~Ses~l~~~k~~~~~r~~~k~I-~~p~iv~~~~v~~a~eK~a~yf~v~l~~V~~~~~ 202 (491)
T KOG1383|consen 125 CVNMIANLFNAPSDSCGC-GTVGGSESGLAAKKSYRNRRKAQKGI-DKPNIVTPQNVHAAFEKAARYFEVELREVPLDEG 202 (491)
T ss_pred HHHHHHHHhcCCccccCc-cccccchHHHHHHHHHHHHHHhccCC-CCccccchHHHHHHHHHHHhhEEEEEEeeecccc
Confidence 999999999988653322 1112234667777766532 232 356789999889889999999999999999984
Q ss_pred CCCCCHHHHHHHHHhcCCCEEEEEEEcCC-CccccccCHHHHHHHHHH-cCCEEEEEccccccccCCCCC-C-----cc-
Q 001989 712 KGNINIEELRKAAEANRDNLSTLMVTYPS-THGVYEEGIDEICKIIHD-NGGQVYMDGANMNAQVGLTSP-G-----YI- 782 (985)
Q Consensus 712 ~g~iD~e~L~~~i~~~~~~t~~Vvv~~pn-~~G~i~~di~eI~~la~~-~galliVD~a~~~~~~~l~~p-g-----~~- 782 (985)
+.++|+..+.+.++ +||++|+...|+ ++|.++ |+++|.++.-+ +++.+|||++ .|+|..| + .|
T Consensus 203 ~~~~D~~k~~~~i~---eNti~lv~~~~~~p~G~~e-~ve~l~~l~~e~w~ipiHvDa~----~GgFi~p~~~~~~~~fd 274 (491)
T KOG1383|consen 203 DYRVDPGKVVRMID---ENTIMLVGSLPNFPTGEIE-DVEKLADLLLEIWDIPIHVDAC----LGGFINPAGYLNEEEFD 274 (491)
T ss_pred ceEecHHHHHHHhc---cceEEEEEEcCCCCccchh-hHHHHHHHHHHHhCCceeeccc----CccccccccccCccccc
Confidence 68999999999998 899999999998 599999 99999999999 9999999965 5666554 2 22
Q ss_pred ----CCcEEEeCCcccccccCCCCCCceEEEEEc-ccccCcCCCCccccCCCCCCC-CCCCCCCCCCCcchhhhHHHHHH
Q 001989 783 ----GADVCHLNLHKTFCIPHGGGGPGMGPIGVK-KHLAPFLPSHPVVSTGGIPAP-EKSQPLGTIAAAPWGSALILPIS 856 (985)
Q Consensus 783 ----g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~-~~l~~~lp~~~~g~~~~~~~~-~~~~~~~~i~s~~~g~~~~~~~a 856 (985)
++-.+..+.||+ |+..+|.|.+.-+ +++.+. .++-.+ .| +..+++.++..+..| ...+++
T Consensus 275 Fr~p~V~Sisa~~HKY-----Gl~~~G~~~vl~r~k~~~~~---q~~~~~----~w~Gg~y~s~TlngSR~g--~~va~~ 340 (491)
T KOG1383|consen 275 FRVPGVTSISADGHKY-----GLAPAGSSWVLYRNKELLPH---QLFFHT----DWLGGIYASPTLNGSRPG--SQVAAQ 340 (491)
T ss_pred cCCCCceeEeecccee-----eeeecCcEEEEEcccccccc---eEEEec----cccCccccCcccccCCcc--cHHHHH
Confidence 245568889995 3333577766655 333221 111000 01 112234444433333 335678
Q ss_pred HHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhcc--CCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCcc
Q 001989 857 YTYIAMMGSKGLTEASKIAILNANYMAKRLEKH--YPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHG 934 (985)
Q Consensus 857 ~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~g--~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~ 934 (985)
|+.|..+|.+||++..+++.+++++|++.|++. +.+. ++ |.. .++.+.. ...+..++.+.|.++||++
T Consensus 341 wa~~~~lG~eGY~~~~~~ive~~~~l~egie~i~~i~i~--gk--p~v--s~~~~~s----~~~~i~elsd~l~~~GW~l 410 (491)
T KOG1383|consen 341 WAALMSLGEEGYRENTQNIVETARKLREGIENIKGIKIV--GK--PLV--SFILFGS----NDVNIFELSDLLRKKGWIL 410 (491)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhccccceec--CC--CcE--EEEEccC----CccchhhhhHHHHhcCcCc
Confidence 999999999999999999999999999999973 4432 22 222 1222221 2467889999999999999
Q ss_pred CCCCCCCCCEEEEeccCCCCHHHH-HHHHccCChhHHHHhhcc-CCccccc
Q 001989 935 PTMSWPVPGTLMIEPTESESKSWT-GIVMLSSPSEKKLHRLKM-GRQISTT 983 (985)
Q Consensus 935 ~~~~~p~~~~lris~t~~~t~eeI-d~~~~~~~l~~~~~~~~~-~~~~~~~ 983 (985)
+..++| ..++||++..++.+++ |+ |+.-+++++++++. ..+++..
T Consensus 411 nalq~P--~a~Hi~vt~~~~~~~~A~~--~v~Di~~~~~el~~~p~~~~~~ 457 (491)
T KOG1383|consen 411 NALQFP--AAIHICVTRVHAREDVADR--FVADIRKVVEELKSLPESKTHG 457 (491)
T ss_pred cccCCC--CceEEEEEeeeccHHHHHH--HHHHHHHHHHHHHhCCCcccCc
Confidence 988887 5999999999988885 55 67788889988877 5555543
|
|
| >PLN02880 tyrosine decarboxylase | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.3e-22 Score=238.96 Aligned_cols=383 Identities=13% Similarity=0.071 Sum_probs=244.8
Q ss_pred cCCCCHHHHHHHHHHHhccccCcccccccccccc--cCCCc-cccccccccccccccCCCCchhhhhhHHHHHHHHHHHH
Q 001989 565 NKYHTEHELLRYIHLLQSKELSLCHSMIPLGSCT--MKLNA-TTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWL 641 (985)
Q Consensus 565 ~~~~se~e~~~~l~~l~~~~~~~~~~~~~lG~~t--~~~~~-~~~~~~~~~~~f~~~~p~~p~e~~~G~~~~~~e~~~~l 641 (985)
+++.+..++++.+.+.-.......+...|+|+-. +.... ..++....+.. +...| +.+++..++..++.+|+
T Consensus 57 ~~~~~~~~~l~~~~~~i~~~~~~~~hP~f~~~~~~~~~~~~~lad~l~~~~n~--~~~~~---~~sp~~~~lE~~vi~wl 131 (490)
T PLN02880 57 NQPETLDQVLDDVQAKILPGVTHWQSPNYFAYYPSNSSVAGFLGEMLSAGLNI--VGFSW---ITSPAATELEMIVLDWL 131 (490)
T ss_pred CCCCCHHHHHHHHHHHHhcCCCCCCCCCeeEeccCCCcHHHHHHHHHHHhhcc--CCccc---ccCcccHHHHHHHHHHH
Confidence 5667888999999875554533334567777421 11111 12222211111 11122 34567888999999999
Q ss_pred HHHhCCCcc--------ceecCcHHHHHHHHHHHHHHHHH-hcCCC--CCCEEEEcCCCCcccHHHHHHCCc---EEEEE
Q 001989 642 CTITGFDSF--------SLQPNAGAAGEYAGLMVIRAYHK-ARGDH--HRNVCIIPVSAHGTNPATAAMCGM---KIVSV 707 (985)
Q Consensus 642 a~l~G~~~~--------~~~~~sGa~a~~a~l~air~~~~-~~g~~--~~~~IIv~~~~Hg~~~~~a~~~G~---~vv~v 707 (985)
++++|++.. .++.++|+++++.++.++|.... ..|.. ++-.|++++.+|.+..+++...|+ .++.|
T Consensus 132 ~~l~g~p~~~~~~~~~gG~~tsggs~anl~al~~AR~~~~~~~g~~~~~~~vv~~S~~aH~Sv~Kaa~~lGlg~~~v~~V 211 (490)
T PLN02880 132 AKLLNLPEQFLSTGNGGGVIQGTASEAVLVVLLAARDRVLRKVGKNALEKLVVYASDQTHSALQKACQIAGIHPENCRLL 211 (490)
T ss_pred HHHhCCCchhhcCCCCceEEcCccHHHHHHHHHHHHHHHHHHhcccccCCeEEEEcCCchHHHHHHHHHcCCCHHHEEEe
Confidence 999999863 34556778888888888886432 22211 233566798899999999999998 48889
Q ss_pred cCCC--CCCCCHHHHHHHHHhc---CCCEEEEEEEcCC-CccccccCHHHHHHHHHHcCCEEEEEccccccccCCC----
Q 001989 708 GTDA--KGNINIEELRKAAEAN---RDNLSTLMVTYPS-THGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLT---- 777 (985)
Q Consensus 708 ~~d~--~g~iD~e~L~~~i~~~---~~~t~~Vvv~~pn-~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~---- 777 (985)
|+|. ++++|+++|+++|++. .....+|+.+..+ .+|.++ |+++|+++|+++|+|+|||+|+..+.....
T Consensus 212 p~d~~~~~~md~~~L~~~i~~~~~~g~~p~~vvataGTT~~GaiD-pl~eI~~i~~~~~iwlHVDaA~gg~~~~~~~~~~ 290 (490)
T PLN02880 212 KTDSSTNYALAPELLSEAISTDLSSGLIPFFLCATVGTTSSTAVD-PLLELGKIAKSNGMWFHVDAAYAGSACICPEYRH 290 (490)
T ss_pred ecCCCcCCcCCHHHHHHHHHHHHHCCCccEEEEEecCCCcCcccC-cHHHHHHHHHHcCCEEEEehhhHHHHHhCHHHHH
Confidence 9975 5799999999999732 1124667777776 499999 899999999999999999999742211110
Q ss_pred -CCCccCCcEEEeCCcccccccCCCCCCceEEEEEccc--ccCcC---CCCccccCCCC-CCCC-CCCCCCCCCCcchhh
Q 001989 778 -SPGYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKH--LAPFL---PSHPVVSTGGI-PAPE-KSQPLGTIAAAPWGS 849 (985)
Q Consensus 778 -~pg~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~--l~~~l---p~~~~g~~~~~-~~~~-~~~~~~~i~s~~~g~ 849 (985)
..+-.++|.++.++|||++.|++ .|++++++. +...+ +.++.....+. ..+. .... -.++ .
T Consensus 291 ~l~gie~aDSit~d~HKwl~~P~~-----~g~llvr~~~~l~~~~~~~~~Yl~~~~~~~~~~~~~~~~~--i~~~----r 359 (490)
T PLN02880 291 YIDGVEEADSFNMNAHKWFLTNFD-----CSLLWVKDRNALIQSLSTNPEFLKNKASQANSVVDYKDWQ--IPLG----R 359 (490)
T ss_pred HhcCchhcCEEEECchhhcCCCcc-----EEEEEEeCHHHHHHHHccCHHHhcCccccccCCCChhccC--cCCC----C
Confidence 12335789999999999987654 568888852 11111 11110000000 0000 0000 0011 1
Q ss_pred hHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc--cCCeeecCCCCceeeEEEEEecCccccCCCC-------H
Q 001989 850 ALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK--HYPILFRGVNGTVAHEFIVDLRGLKNTAGIE-------P 920 (985)
Q Consensus 850 ~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~--g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~-------~ 920 (985)
...+...|+.|+.+|.+|++++.++.+++++++.+.|++ +++++.+ +.++.+++.+++. +.+ .
T Consensus 360 r~~alklw~~l~~~G~~g~~~~i~~~~~lA~~~~~~l~~~~~~el~~~----~~~~iv~Fr~~~~----~~~~~~~~~~n 431 (490)
T PLN02880 360 RFRSLKLWMVLRLYGVENLQSYIRNHIKLAKEFEQLVAQDSRFEVVTP----RIFSLVCFRLVPP----KNNEDNGNKLN 431 (490)
T ss_pred cccHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEecC----CceEEEEEEEeCC----CCChhhHHHHH
Confidence 223456799999999999999999999999999999976 4555432 2355566666421 111 1
Q ss_pred HHHHHHHHHCCCc-cCCCCCCCCCEEEEeccCC-CCHHHHHHHHccCChhHHHHhh
Q 001989 921 EDVAKRLMDYGFH-GPTMSWPVPGTLMIEPTES-ESKSWTGIVMLSSPSEKKLHRL 974 (985)
Q Consensus 921 ~~v~~~L~~~Gi~-~~~~~~p~~~~lris~t~~-~t~eeId~~~~~~~l~~~~~~~ 974 (985)
.++.++|.+.|.. +....+.-...+|+|+.-. +|.+|||+ +++.+.++.+++
T Consensus 432 ~~l~~~l~~~g~~~v~~t~~~g~~~lR~~~~n~~tt~~di~~--~~~~i~~~~~~~ 485 (490)
T PLN02880 432 HDLLDAVNSSGKIFISHTVLSGKYVLRFAVGAPLTEERHVTA--AWKVLQDEASKL 485 (490)
T ss_pred HHHHHHHHhCCCEEEEEEEECCEEEEEEEecCCCCCHHHHHH--HHHHHHHHHHHH
Confidence 3466666666654 4332222246899999865 55699999 778888777665
|
|
| >COG4992 ArgD Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.91 E-value=8.2e-23 Score=224.93 Aligned_cols=337 Identities=18% Similarity=0.253 Sum_probs=236.9
Q ss_pred CHHHHHHHHHHHhccccCcccccccccccccCCCccccccccccccccccCCCCchhhhhhHHHHHHHHHHHHHHHhC-C
Q 001989 569 TEHELLRYIHLLQSKELSLCHSMIPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITG-F 647 (985)
Q Consensus 569 se~e~~~~l~~l~~~~~~~~~~~~~lG~~t~~~~~~~~~~~~~~~~f~~~~p~~p~e~~~G~~~~~~e~~~~la~l~G-~ 647 (985)
-+.+..+||+..+.-. ++.||+|+|.+..+...|.....+.+|.+...+ ..++.+.|+++++ +
T Consensus 37 ~D~~G~~YlDf~~Gia------v~~lGH~hP~iv~al~~Q~~kl~h~sn~~~~~~----------~~~la~~L~~~s~~~ 100 (404)
T COG4992 37 WDQQGREYLDFAAGIA------VNNLGHCHPALVEALKEQAEKLWHVSNLFYNEP----------QAELAEKLVELSPFA 100 (404)
T ss_pred ECCCCCEeeeecccee------eeccCCCCHHHHHHHHHHHHHhhhcccccCChH----------HHHHHHHHHhhCccc
Confidence 3566778888766543 668999999998877766655555555332222 3478889999997 4
Q ss_pred CccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEE-cCCCCcccHHH---------HHHCC---cEEEEEcCCCCCC
Q 001989 648 DSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCII-PVSAHGTNPAT---------AAMCG---MKIVSVGTDAKGN 714 (985)
Q Consensus 648 ~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv-~~~~Hg~~~~~---------a~~~G---~~vv~v~~d~~g~ 714 (985)
+. .|++|||++|+|++++.+|.|.. + ..+.+||. .+++||....+ .+.++ -.++.+|.+
T Consensus 101 d~-vff~NSGaEA~EaAiKlARk~~~--~-~~k~~Iia~~nsFHGRT~galS~t~~~ky~~~F~Pl~~g~~~vpfn---- 172 (404)
T COG4992 101 DR-VFFCNSGAEANEAALKLARKYTG--D-PEKSKIIAFENSFHGRTLGALSATGQPKYRKGFGPLLPGFRHVPFN---- 172 (404)
T ss_pred cE-EEEcCCcHHHHHHHHHHHHHHcC--C-CCCcEEEEEcCCcCCccceeeeccCChhhccCCCCCCCCceecCCC----
Confidence 43 57889999999999999998842 1 23456665 77899965332 22111 135567774
Q ss_pred CCHHHHHHHHHhcCCCEEEEEEEcC-CCcccccc---CHHHHHHHHHHcCCEEEEEccccccccCCCCCCccC-------
Q 001989 715 INIEELRKAAEANRDNLSTLMVTYP-STHGVYEE---GIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIG------- 783 (985)
Q Consensus 715 iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~---di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~g------- 783 (985)
|+++++++|+ ++|++|+++-- ..-|++.+ -++++.++|+++|+++|+|++| .|++++|++.
T Consensus 173 -Di~al~~ai~---~~taAvivEPIQGEgGV~~~~~~fl~~lr~lCd~~g~LLI~DEVQ----tG~GRTGk~fA~e~~gV 244 (404)
T COG4992 173 -DIEALEAAID---EDTAAVIVEPIQGEGGVIPAPPEFLKALRELCDEHGALLILDEVQ----TGLGRTGKLFAYEHYGV 244 (404)
T ss_pred -CHHHHHHHhc---cCeEEEEEecccCCCCCCCCCHHHHHHHHHHHHHhCeEEEEeccc----cCCCccchHHHHHHhCC
Confidence 9999999999 79999999863 46777753 3899999999999999999876 6677887653
Q ss_pred -CcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHH
Q 001989 784 -ADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAM 862 (985)
Q Consensus 784 -~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~ 862 (985)
+||++.. |.| |+| --+|.+.+++.....+... ...|+|.|++++|+++.+.+..
T Consensus 245 ~PDI~tla--K~L----gGG-~PigA~la~~~~~~~~~~G------------------~HgSTfGGNpLacAv~~a~l~~ 299 (404)
T COG4992 245 EPDILTLA--KAL----GGG-FPIGAMLATEEIASAFTPG------------------DHGSTFGGNPLACAVALAVLEV 299 (404)
T ss_pred CCCEEEee--ccc----cCC-ccceeeEEchhhhhcCCCC------------------cccCCCCcCHHHHHHHHHHHHH
Confidence 7998753 766 444 4455566565544433211 1124678899999999999999
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHHhhc---cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCCC
Q 001989 863 MGSKGLTEASKIAILNANYMAKRLEK---HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSW 939 (985)
Q Consensus 863 lg~eGl~~~~~~~~~~a~~l~~~L~~---g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~~ 939 (985)
+..+++.+ +..+...+|.++|++ .++++..-.....+.. +.+. ....+.++.+.|.++|+.+....
T Consensus 300 l~~e~ll~---~v~~~g~~~~~~L~~l~~~~~~v~~vRG~GLmiG--iel~-----~~~~a~~~~~~~~~~gvL~~~a~- 368 (404)
T COG4992 300 LLEEGLLE---NVREKGEYLLQRLRELKRRYPLVKEVRGRGLMIG--IELK-----EPYRARDIVRALREEGVLVLPAG- 368 (404)
T ss_pred HcchhHHH---HHHHHHHHHHHHHHHHhhcCCceeeeecceeEEE--EEec-----CcccHHHHHHHHHHCCeEEecCC-
Confidence 99887765 566788899999986 2332211111122222 2222 11247899999999999875443
Q ss_pred CCCCEEEEeccCCCCHHHHHHHHccCChhHHHHhhccC
Q 001989 940 PVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRLKMG 977 (985)
Q Consensus 940 p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~~~~ 977 (985)
++.+|+.|+...++||||. .++.++++++....+
T Consensus 369 --~~ViR~~PpL~i~~eei~~--~~~~l~~~l~~~~~~ 402 (404)
T COG4992 369 --PNVIRFLPPLVITEEEIDE--ALDALERALAAASAR 402 (404)
T ss_pred --CCeEEecCCccCCHHHHHH--HHHHHHHHHHHhhhc
Confidence 4799999999999999999 889999999876553
|
|
| >cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.1e-22 Score=230.23 Aligned_cols=311 Identities=15% Similarity=0.135 Sum_probs=212.2
Q ss_pred hHHHHHHHHHHHHHHHhCCCcc--ceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCccc--HHHHHHCCcEE
Q 001989 629 GYQEMFNNLGEWLCTITGFDSF--SLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTN--PATAAMCGMKI 704 (985)
Q Consensus 629 G~~~~~~e~~~~la~l~G~~~~--~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~--~~~a~~~G~~v 704 (985)
...+..+++++.+++++|.+.. .+++++|++++..++. .+. .++++||++...|..+ ...++..|+++
T Consensus 29 ~~~~~~~~~~~~la~~~g~~~~~~~~~~~~~t~al~~~~~---~~~-----~~g~~vl~~~~~~~~~~~~~~~~~~g~~~ 100 (356)
T cd06451 29 EFLALMDEILEGLRYVFQTENGLTFLLSGSGTGAMEAALS---NLL-----EPGDKVLVGVNGVFGDRWADMAERYGADV 100 (356)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCEEEEecCcHHHHHHHHH---HhC-----CCCCEEEEecCCchhHHHHHHHHHhCCCe
Confidence 4556788999999999998542 3556667776543333 321 3678899987656543 23467789999
Q ss_pred EEEcCCCCCCCCHHHHHHHHHhcCC-CEEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCcc
Q 001989 705 VSVGTDAKGNINIEELRKAAEANRD-NLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYI 782 (985)
Q Consensus 705 v~v~~d~~g~iD~e~L~~~i~~~~~-~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~ 782 (985)
+.+|.++++.+|+++++++++ + ++++|++++| |.+|.+. |+++|+++|+++|+++++|++|..+... .....+
T Consensus 101 ~~v~~~~~~~~~~~~l~~~i~---~~~~~~v~i~~~~~~~G~~~-~~~~i~~~a~~~~~~li~D~~~~~g~~~-~~~~~~ 175 (356)
T cd06451 101 DVVEKPWGEAVSPEEIAEALE---QHDIKAVTLTHNETSTGVLN-PLEGIGALAKKHDALLIVDAVSSLGGEP-FRMDEW 175 (356)
T ss_pred EEeecCCCCCCCHHHHHHHHh---ccCCCEEEEeccCCCccccc-CHHHHHHHHHhcCCEEEEeeehhccCcc-cccccc
Confidence 999998778999999999997 5 7889999988 4699998 8999999999999999999998643322 234567
Q ss_pred CCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCC--CccccCCCC----CCCCCCCCCCCCCCcchhhhHHHHHH
Q 001989 783 GADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPS--HPVVSTGGI----PAPEKSQPLGTIAAAPWGSALILPIS 856 (985)
Q Consensus 783 g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~--~~~g~~~~~----~~~~~~~~~~~i~s~~~g~~~~~~~a 856 (985)
++|++++++||||+.| +|+|++++++++.+.+.. ...++..+. ..+.......+.. +.....+.
T Consensus 176 ~~d~~~~s~~K~l~~p-----~g~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~-----~~~~~~a~ 245 (356)
T cd06451 176 GVDVAYTGSQKALGAP-----PGLGPIAFSERALERIKKKTKPKGFYFDLLLLLKYWGEGYSYPHTP-----PVNLLYAL 245 (356)
T ss_pred CccEEEecCchhccCC-----CCcceeEECHHHHHHHHhcCCCCceeecHHHHHhhhcccCCCCCCC-----hHHHHHHH
Confidence 8999999999999532 478999999876544321 111110000 0000000111111 11222333
Q ss_pred HHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeE-EEEEecCccccCCCCHHHHHHHHHHC-CCc
Q 001989 857 YTYIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHE-FIVDLRGLKNTAGIEPEDVAKRLMDY-GFH 933 (985)
Q Consensus 857 ~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~-~iv~~~~~~~~~g~~~~~v~~~L~~~-Gi~ 933 (985)
.+.+..+..+|+.+..++..++++++.+.|++ ++.+... + ...... +.+.++ .+.+..+++++|.++ ||.
T Consensus 246 ~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~-~-~~~~~~~~~~~~~-----~~~~~~~~~~~L~~~~gI~ 318 (356)
T cd06451 246 REALDLILEEGLENRWARHRRLAKALREGLEALGLKLLAK-P-ELRSPTVTAVLVP-----EGVDGDEVVRRLMKRYNIE 318 (356)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCeeccC-c-ccCCCceEEEECC-----CCCCHHHHHHHHHHhCCEE
Confidence 45566666778888888889999999999987 5555321 1 111111 223433 245788999999998 998
Q ss_pred cCCCCCC-CCCEEEEeccCCCCHHHHHHHHccCChhHHH
Q 001989 934 GPTMSWP-VPGTLMIEPTESESKSWTGIVMLSSPSEKKL 971 (985)
Q Consensus 934 ~~~~~~p-~~~~lris~t~~~t~eeId~~~~~~~l~~~~ 971 (985)
+.....+ .++++|++++.++|+|||++ ++++|++++
T Consensus 319 ~~~g~~~~~~~~iRis~~~~~~~e~v~~--~~~~l~~~~ 355 (356)
T cd06451 319 IAGGLGPTAGKVFRIGHMGEATREDVLG--VLSALEEAL 355 (356)
T ss_pred EecccccccCCEEEEecCCCCCHHHHHH--HHHHHHHHh
Confidence 7543222 34799999999999999999 778887764
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway. |
| >TIGR02006 IscS cysteine desulfurase IscS | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.6e-21 Score=226.64 Aligned_cols=288 Identities=15% Similarity=0.129 Sum_probs=210.5
Q ss_pred HHHHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhh-hcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc
Q 001989 210 LESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNI-QKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL 288 (985)
Q Consensus 210 l~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~-~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~ 288 (985)
.+.+.++++.+++++|.++.++.+++|+|.+++.++.++.. ..++|++|+++..+|+++...|+.. +..|++++.++.
T Consensus 46 ~~~~~~~r~~la~~~g~~~~~v~~~~g~t~a~~~~l~~l~~~~~~~g~~Vi~~~~~h~s~~~~~~~~-~~~g~~v~~v~~ 124 (402)
T TIGR02006 46 EEAVENARNQVAELIGADSREIVFTSGATESNNLAIKGIAHFYKSKGNHIITSKTEHKAVLDTCRYL-EREGFEVTYLPP 124 (402)
T ss_pred HHHHHHHHHHHHHHhCCCCCeEEEeCCHHHHHHHHHHHHHHhhcCCCCEEEECCCccHHHHHHHHHH-HhcCCEEEEEcc
Confidence 46788899999999999988899999999887776654321 1247899999999999999988654 456899888754
Q ss_pred --------hhhhc-cCCCEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCC-CCCcccceEEEecCc
Q 001989 289 --------KDIDY-KSGDVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILK-PPGELGADIVVGSAQ 357 (985)
Q Consensus 289 --------~~l~~-l~~~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~-~~~~~GaDi~v~s~k 357 (985)
+++++ +++++++|+++++ |.+|.+.|+++|+++||++|++++||+ .++.|... +..++|+|+++++++
T Consensus 125 ~~~~~~d~~~l~~~l~~~~~lv~v~~~~n~tG~~~~~~~I~~l~~~~g~~livD~-a~a~g~~~~~~~~~~~D~~~~s~~ 203 (402)
T TIGR02006 125 KSNGLIDLEELKAAIRDDTILVSIMHVNNEIGVIQDIAAIGEICRERKVFFHVDA-AQSVGKIPINVNELKVDLMSISGH 203 (402)
T ss_pred CCCCcCCHHHHHHhcCCCCEEEEEECCCcCceecccHHHHHHHHHHcCCEEEEEc-chhcCCcccCccccCCCEEEEehh
Confidence 34555 7788999999987 789999999999999999999999943 34666443 456799999999995
Q ss_pred cccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHHHH
Q 001989 358 RFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVY 437 (985)
Q Consensus 358 ~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~ 437 (985)
|+.+| +|+|+++++++....+.+.+.| |.. ..+.+.||+|+ ..+.++.+++ .+
T Consensus 204 K~~gp-----~G~G~l~~~~~~~~~~~~~~~g------~~~-----------~~~~~~gt~~~---~~~~al~~al--~~ 256 (402)
T TIGR02006 204 KIYGP-----KGIGALYVRRKPRVRLEALIHG------GGH-----------ERGMRSGTLPT---HQIVGMGEAF--RI 256 (402)
T ss_pred hhcCC-----CceEEEEEccCCCCCCCceecC------CCc-----------cCCccCCCccH---HHHHHHHHHH--HH
Confidence 55333 4689999998765555443333 111 01235688887 4565666665 33
Q ss_pred hCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCC--Cc-c--eEEEecCCHHHHHHHHHHcCceee------e-----
Q 001989 438 HGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLP--FF-D--TVKVKCADAHAIASAAYKIEMNLR------V----- 501 (985)
Q Consensus 438 ~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~--~~-~--~~~~~~~~~~~v~~~L~~~GI~~~------~----- 501 (985)
+ .++++++.++..+++++++++|+++.++++..++ .. . .|+|......++...|. ||.++ .
T Consensus 257 ~-~~~~~~~~~~~~~l~~~l~~~l~~~~~v~~~~~~~~~~p~~~~v~f~~~~~~~~~~~l~--~i~v~~G~~c~~~~~~~ 333 (402)
T TIGR02006 257 A-KEEMAQDTAHVLALRDRLLNGIKSIEEVYLNGDLEHRVPGNLNVSFNYVEGESLIMALK--DLAVSSGSACTSASLEP 333 (402)
T ss_pred H-HHhHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCccccCCCeEEEEEeCcCHHHHHHhcC--CEEEechhhcCCCCCCc
Confidence 3 2478889999999999999999988548876431 22 2 24444222666766663 55331 0
Q ss_pred ------------ecCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 502 ------------VDSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 502 ------------~~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
...+.+|+|++.+||+||||+|+++|.+
T Consensus 334 ~~~l~~lg~~~~~~~~~vR~S~~~~~t~edid~l~~~l~~ 373 (402)
T TIGR02006 334 SYVLRALGINDELAHSSIRFTIGRFTTEEEIDYAVKLVKS 373 (402)
T ss_pred cHHHHHcCCChhhcCceEEEEecCCCCHHHHHHHHHHHHH
Confidence 0137899999999999999999999975
|
This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors. |
| >PLN02724 Molybdenum cofactor sulfurase | Back alignment and domain information |
|---|
Probab=99.90 E-value=5e-22 Score=247.91 Aligned_cols=350 Identities=14% Similarity=0.127 Sum_probs=235.3
Q ss_pred HHHHHhcCCCccceecCCCCCCCCCcHHHHHHHHhCCcccccc--CCChh-hHhhhHHHHHHHHHHHHHHhcCCCCc--c
Q 001989 156 HMQKLASMNKVYKSFIGMGYYNTHVPPVILRNIMENPAWYTQY--TPYQA-EIAQGRLESLLNFQTMIADLTGLPMS--N 230 (985)
Q Consensus 156 ~~~~l~~~n~~~~~~lG~g~y~~~~p~~v~~~i~~~~~~~t~~--~pyq~-e~sqg~l~~i~e~q~~ia~L~g~~~~--~ 230 (985)
++..+ ++..|.++-|.+.+ -|..+.+. .. .|+..+ +|... ..++-+.+.+.++++.+|+++|+++. .
T Consensus 28 ~fp~l--~~~iYLD~Aatt~~---~~~~V~~~-~~--~~~~~~~~np~s~~~~s~~~~~~~e~aR~~ia~~lga~~~~~~ 99 (805)
T PLN02724 28 EFARL--KGVVYLDHAGATLY---SESQLEAA-LA--DFSSNVYGNPHSQSDSSMRSSDTIESARQQVLEYFNAPPSDYA 99 (805)
T ss_pred Hhhhc--CCCEeEeCCCCCCC---CHHHHHHH-HH--HHHhhccCCCCcCcchhhhHHHHHHHHHHHHHHHhCCCccceE
Confidence 45555 33456665555542 33455432 21 122211 33321 24566778899999999999999765 4
Q ss_pred eeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCch------------------hhh
Q 001989 231 ASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDLK------------------DID 292 (985)
Q Consensus 231 ~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~~------------------~l~ 292 (985)
+.++.|+|.++..+..++.+ ++||+||++..+|+++.. |+.+++..|+++++++++ +|+
T Consensus 100 VvFtsnaT~alnlva~~l~~--~~gd~Iv~t~~eH~svl~-~~~~a~~~G~~v~~v~~~~~~~~~~~~~g~~~~~~~~l~ 176 (805)
T PLN02724 100 CVFTSGATAALKLVGETFPW--SSESHFCYTLENHNSVLG-IREYALEKGAAAIAVDIEEAANQPTNSQGSVVVKSRGLQ 176 (805)
T ss_pred EEEeCChHHHHHHHHHHCCC--CCCCeEEEeeccccchHH-HHHHHHHcCCeEEeccchhccccccccccccccchhhhh
Confidence 68888999776655444433 378999999999999885 546667789999887653 122
Q ss_pred c-c----------CCCEeEEEEEc-CCCCeeeccHHHHHHHHHhC-------C-cEEEEEecCccccCC-CCCCcccceE
Q 001989 293 Y-K----------SGDVCGVLVQY-PGTEGEVLDYGDFIKNAHAN-------G-VKVVMATDLLALTIL-KPPGELGADI 351 (985)
Q Consensus 293 ~-l----------~~~t~~V~v~~-pn~~G~v~di~~I~~~a~~~-------g-alliV~a~~~~lg~l-~~~~~~GaDi 351 (985)
+ + +++|++|++++ +|.+|.+.|++.|..+++.. | ++++||+ ..++|.+ .+..++|+|+
T Consensus 177 ~~~~~~l~~~~~~~~~t~LVa~~~vsN~tG~i~pi~~i~~~~~~~~~~~~~~g~~~v~vDa-aQ~~g~~piDv~~~~~Df 255 (805)
T PLN02724 177 RRNTSKLQKREDDGEAYNLFAFPSECNFSGAKFPLDLVKLIKDNQHSNFSKSGRWMVLLDA-AKGCGTSPPDLSRYPADF 255 (805)
T ss_pred hhhhhhhccccccCCCcceEEEEccccCCCCcCCHHHHHHHHHhcccccccCcceEEEeeh-hhhcCCCCCChhhcCCCE
Confidence 1 1 24568888887 58999999999775554432 3 5677842 2344433 2457899999
Q ss_pred EEecCccc-cccCCCCCCcEEEEEEchhhHhcCCCceeee-eecCC-CCcceeeecccccccccccccCCCccchhHHHH
Q 001989 352 VVGSAQRF-GVPMGYGGPHAAFLATSQEYKRMMPGRIVGV-SIDSS-GKPALRVAMQTREQHIRRDKATSNICTAQALLA 428 (985)
Q Consensus 352 ~v~s~k~l-g~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~-t~d~~-g~~~~~l~l~tre~~irre~atsni~t~~~l~a 428 (985)
+++|++|| |+|. |+|+|++++++.+.|.+.+.|+ +.+.. ....|... ..+.+.|+|.||.|+ .++.+
T Consensus 256 l~~S~HK~~GgP~-----G~G~L~vr~~~~~~l~p~~~GGg~~~~~~~~~~~~~~--~~~~~~rfE~GT~n~---~~i~~ 325 (805)
T PLN02724 256 VVVSFYKIFGYPT-----GLGALLVRRDAAKLLKKKYFGGGTVAASIADIDFVKR--RERVEQRFEDGTISF---LSIAA 325 (805)
T ss_pred EEEecceeccCCC-----CceEEEEehhhhhhhcCCccCCCceEEEecccceeec--cccHHHHhcCCCcch---hHHHH
Confidence 99999444 3342 5899999999988888888875 22100 01112111 112345789999999 56667
Q ss_pred HHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCC------CeEEcCCC--------CcceEEEecCC-------HHH
Q 001989 429 NMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLG------TVEVQGLP--------FFDTVKVKCAD-------AHA 487 (985)
Q Consensus 429 ~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g------~~~~~~~~--------~~~~~~~~~~~-------~~~ 487 (985)
+.+++ .++...|++++.++..++++||.++|+++. ++++++.. ...+|+|++.+ ..+
T Consensus 326 l~aal--~~l~~ig~~~I~~~~~~L~~~l~~~L~~l~~~~g~~~v~iyg~~~~~~~~~~r~~ivsFnv~~~~~~~v~~~~ 403 (805)
T PLN02724 326 LRHGF--KLLNRLTISAIAMHTWALTHYVANSLRNLKHGNGAPVCVLYGNHTFKLEFHIQGPIVTFNLKRADGSWVGHRE 403 (805)
T ss_pred HHHHH--HHHHHhChHHHHHHHHHHHHHHHHHHHhccCCCCCeEEEEcCCCCCCCCcccccCEEEEEEEcCCCCEeCHHH
Confidence 77776 555566899999999999999999999873 37787532 23466666543 344
Q ss_pred HHHHHHHcCceeee------------e---------------------------cCCeEEEEeccCCCHHHHHHHHHHHh
Q 001989 488 IASAAYKIEMNLRV------------V---------------------------DSNTVTASFDETTTLEDVDKLFIVFA 528 (985)
Q Consensus 488 v~~~L~~~GI~~~~------------~---------------------------~~~~lris~t~~~t~edId~li~aL~ 528 (985)
+.+.+.++||.++. + ..+.+|+|++.+||.+|||+|+++|.
T Consensus 404 v~~l~~~~gI~vR~G~~Ca~~~~~~~lg~~~~~l~~~~~~~~~c~~~~~~~~~~~~G~vRvS~g~ynt~eDvd~lv~~l~ 483 (805)
T PLN02724 404 VEKLASLSGIQLRTGCFCNPGACAKYLGLSHKDLQANFEAGHVCWDDQDVIHGRPTGAVRVSFGYMSTFEDCQKFIDFII 483 (805)
T ss_pred HHHHHHhcCcEEeeccccCchHHHHHcCCCHHHHHHHhhcCCccCchhheecCcccceEEEEcCccCCHHHHHHHHHHHH
Confidence 55555667997631 0 12789999999999999999999998
Q ss_pred C
Q 001989 529 G 529 (985)
Q Consensus 529 ~ 529 (985)
.
T Consensus 484 ~ 484 (805)
T PLN02724 484 S 484 (805)
T ss_pred H
Confidence 5
|
|
| >TIGR02006 IscS cysteine desulfurase IscS | Back alignment and domain information |
|---|
Probab=99.90 E-value=9.3e-22 Score=228.58 Aligned_cols=309 Identities=13% Similarity=0.154 Sum_probs=207.5
Q ss_pred HHHHHHHHHHHHHHhCCCccc-eecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHH---HHCCcEEEE
Q 001989 631 QEMFNNLGEWLCTITGFDSFS-LQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATA---AMCGMKIVS 706 (985)
Q Consensus 631 ~~~~~e~~~~la~l~G~~~~~-~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a---~~~G~~vv~ 706 (985)
.+.++++++.+++++|.+... ++.++|++++..++.++..+. ..++++||++...|.++...+ +..|++++.
T Consensus 46 ~~~~~~~r~~la~~~g~~~~~v~~~~g~t~a~~~~l~~l~~~~----~~~g~~Vi~~~~~h~s~~~~~~~~~~~g~~v~~ 121 (402)
T TIGR02006 46 EEAVENARNQVAELIGADSREIVFTSGATESNNLAIKGIAHFY----KSKGNHIITSKTEHKAVLDTCRYLEREGFEVTY 121 (402)
T ss_pred HHHHHHHHHHHHHHhCCCCCeEEEeCCHHHHHHHHHHHHHHhh----cCCCCEEEECCCccHHHHHHHHHHHhcCCEEEE
Confidence 466888999999999987644 445566667655544443211 135789999988887765443 456999999
Q ss_pred EcCCCCCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCccCCc
Q 001989 707 VGTDAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIGAD 785 (985)
Q Consensus 707 v~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~g~D 785 (985)
+|++++|.+|+++|+++++ +++++|+++++ |.+|.+. |+++|+++||++|++++||++|+.+...+ +...+++|
T Consensus 122 v~~~~~~~~d~~~l~~~l~---~~~~lv~v~~~~n~tG~~~-~~~~I~~l~~~~g~~livD~a~a~g~~~~-~~~~~~~D 196 (402)
T TIGR02006 122 LPPKSNGLIDLEELKAAIR---DDTILVSIMHVNNEIGVIQ-DIAAIGEICRERKVFFHVDAAQSVGKIPI-NVNELKVD 196 (402)
T ss_pred EccCCCCcCCHHHHHHhcC---CCCEEEEEECCCcCceecc-cHHHHHHHHHHcCCEEEEEcchhcCCccc-CccccCCC
Confidence 9998889999999999997 78899999998 4699998 89999999999999999999997554332 34567999
Q ss_pred EEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcH
Q 001989 786 VCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGS 865 (985)
Q Consensus 786 i~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~ 865 (985)
++++|+||++ |.+|.|+++++++....+.....|... .++.+.++.++. ....+. ..++.+.
T Consensus 197 ~~~~s~~K~~------gp~G~G~l~~~~~~~~~~~~~~~g~~~---~~~~~~gt~~~~-----~~~al~---~al~~~~- 258 (402)
T TIGR02006 197 LMSISGHKIY------GPKGIGALYVRRKPRVRLEALIHGGGH---ERGMRSGTLPTH-----QIVGMG---EAFRIAK- 258 (402)
T ss_pred EEEEehhhhc------CCCceEEEEEccCCCCCCCceecCCCc---cCCccCCCccHH-----HHHHHH---HHHHHHH-
Confidence 9999999975 334899999997544333322222110 011122232321 111122 3334332
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCeeecCCCC-ceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCC---CC---
Q 001989 866 KGLTEASKIAILNANYMAKRLEKHYPILFRGVNG-TVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPT---MS--- 938 (985)
Q Consensus 866 eGl~~~~~~~~~~a~~l~~~L~~g~~l~~~~~~~-~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~---~~--- 938 (985)
+++.+..++...+++++.++|++...+...++.. ...+.+.+.++ +.+.+++..+|. |+.++. +.
T Consensus 259 ~~~~~~~~~~~~l~~~l~~~l~~~~~v~~~~~~~~~~p~~~~v~f~------~~~~~~~~~~l~--~i~v~~G~~c~~~~ 330 (402)
T TIGR02006 259 EEMAQDTAHVLALRDRLLNGIKSIEEVYLNGDLEHRVPGNLNVSFN------YVEGESLIMALK--DLAVSSGSACTSAS 330 (402)
T ss_pred HhHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCccccCCCeEEEEEe------CcCHHHHHHhcC--CEEEechhhcCCCC
Confidence 4566777778888999999997633332222111 11123345554 345667777663 544321 11
Q ss_pred -CC--------C-----CCEEEEeccCCCCHHHHHHHHccCChhHHHHhhcc
Q 001989 939 -WP--------V-----PGTLMIEPTESESKSWTGIVMLSSPSEKKLHRLKM 976 (985)
Q Consensus 939 -~p--------~-----~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~~~ 976 (985)
.| + .+.+|+|+..++|+||||+ +++.|+++++.++.
T Consensus 331 ~~~~~~l~~lg~~~~~~~~~vR~S~~~~~t~edid~--l~~~l~~~~~~~~~ 380 (402)
T TIGR02006 331 LEPSYVLRALGINDELAHSSIRFTIGRFTTEEEIDY--AVKLVKSAIDKLRE 380 (402)
T ss_pred CCccHHHHHcCCChhhcCceEEEEecCCCCHHHHHH--HHHHHHHHHHHHHh
Confidence 01 1 3789999999999999999 88999998877643
|
This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors. |
| >TIGR03403 nifS_epsilon cysteine desulfurase, NifS family, epsilon proteobacteria type | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.5e-21 Score=225.33 Aligned_cols=289 Identities=17% Similarity=0.136 Sum_probs=210.3
Q ss_pred HHHHHHHHHHHHHHhcCC-CCcceeeccchHHHHHHHHHHhhh---hcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEE
Q 001989 209 RLESLLNFQTMIADLTGL-PMSNASLLDEGTAAAEAMAMCNNI---QKGKKKTFIIASNCHPQTIDICITRADGFDIKVV 284 (985)
Q Consensus 209 ~l~~i~e~q~~ia~L~g~-~~~~~sl~~~~ta~~ea~~~a~~~---~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~ 284 (985)
..+.+.+....+++.+|+ ++.++.+++|+|.++..++.++.+ .+.++++|+++..+||++...+.. ++..|++++
T Consensus 40 ~~~~l~~a~~~~~~~~~~~~~~~i~~t~g~teal~~~~~~~~~~~~~~~~~~~vi~~~~e~ps~~~~~~~-~~~~G~~v~ 118 (382)
T TIGR03403 40 THPAIAEALDKLYKGINARDLDDIIITSCATESNNWVLKGVYFDEILKGGKNHIITTEVEHPAVRATCAF-LESLGVEVT 118 (382)
T ss_pred HHHHHHHHHHHHHHHcCcCCCCeEEEeCCHHHHHHHHHHHHHHhhcccCCCCEEEEcCCccHHHHHHHHH-HHHCCCEEE
Confidence 355677777778888887 577899999998766655443311 112357899999999999998864 356899998
Q ss_pred EeCc--------hhhhc-cCCCEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCC-CCCCcccceEEE
Q 001989 285 VSDL--------KDIDY-KSGDVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTIL-KPPGELGADIVV 353 (985)
Q Consensus 285 ~v~~--------~~l~~-l~~~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l-~~~~~~GaDi~v 353 (985)
.++. +++++ ++++|++|++++| |.+|.+.|+++|.++||++|++++||+ ..+.|.. .+..++|+|+++
T Consensus 119 ~v~~~~~g~~d~~~l~~~i~~~t~lv~~~~~~n~tG~~~~~~~I~~la~~~g~~~ivD~-a~~~g~~~~~~~~~~~D~~~ 197 (382)
T TIGR03403 119 YLPINEQGTITAEQVREAITEKTALVSVMWANNETGMIFPIKEIGEICKERGVLFHTDA-VQAIGKIPVDVQKAGVDFLS 197 (382)
T ss_pred EEecCCCCCCCHHHHHHhcccCCeEEEEEcccCCCccccCHHHHHHHHHHcCCEEEEec-hhhcCCCccCccccCCCEEE
Confidence 8865 34555 7788999999887 789999999999999999999999953 3455533 345689999999
Q ss_pred ecCccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHH
Q 001989 354 GSAQRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAM 433 (985)
Q Consensus 354 ~s~k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~ 433 (985)
.+++||. |.||.|++++++++ .+.+.+.|. .. ..+++.||.|+ .+++++.+++
T Consensus 198 ~s~~K~~-----gp~G~g~l~vr~~~--~~~p~~~g~------~~-----------~~~~~~gt~~~---~~~~al~~al 250 (382)
T TIGR03403 198 FSAHKFH-----GPKGVGGLYIRKGV--ELTPLFHGG------EH-----------MGGRRSGTLNV---PYIVAMGEAM 250 (382)
T ss_pred EcchhhC-----CCCceEEEEECCCC--CCCCcccCC------CC-----------CCCcccCCcCh---HHHHHHHHHH
Confidence 9995563 34578999999865 233333331 10 01134588887 4555666665
Q ss_pred HHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCC--C-cceEEEecCC--HHHHHHHHHHcCceeee-------
Q 001989 434 YAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLP--F-FDTVKVKCAD--AHAIASAAYKIEMNLRV------- 501 (985)
Q Consensus 434 ~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~--~-~~~~~~~~~~--~~~v~~~L~~~GI~~~~------- 501 (985)
.++ .++++.+.++..++.++++++|+++++++++++. . .+.+.|.+++ +.++.+.|.++||.++.
T Consensus 251 --~~~-~~~~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gI~v~~g~~c~~~ 327 (382)
T TIGR03403 251 --RLA-NEYLDFEKSHVRRLRDRLEDALLELPDVFVVGDREHRVPNTILISIKGVEGEAMLWDLNKAGIAASTGSACASE 327 (382)
T ss_pred --HHH-HHhHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCCCCcCCEEEEEeCCCCHHHHHHhhccCCEEEEchhccCCC
Confidence 222 3357888899999999999999988559887532 2 2344555554 78888889999998862
Q ss_pred ----------e------cCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 502 ----------V------DSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 502 ----------~------~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
+ ..+.+|+|++.+||++|||+|+++|++
T Consensus 328 ~~~~~~v~~~~g~~~~~~~~~iR~s~~~~~t~~did~~~~~l~~ 371 (382)
T TIGR03403 328 DLEANPVMVAIGADKELAHTAIRLSLSRFTTEEEIDYTIEVFKK 371 (382)
T ss_pred CCCcCHHHHHcCCChHHhCeeEEEECCCCCCHHHHHHHHHHHHH
Confidence 0 025799999999999999999999974
|
Members of this family are the NifS-like cysteine desulfurase of the epsilon division of the Proteobacteria, similar to the NifS protein of nitrogen-fixing bacteria. Like NifS, and unlike IscS, this protein is found as part of a system of just two proteins, a cysteine desulfurase and a scaffold, for iron-sulfur cluster biosynthesis. This protein is called NifS by Olsen, et al. (PubMed:11123951), so we use this designation. |
| >TIGR03403 nifS_epsilon cysteine desulfurase, NifS family, epsilon proteobacteria type | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.7e-21 Score=225.04 Aligned_cols=308 Identities=14% Similarity=0.132 Sum_probs=202.4
Q ss_pred HHHHHHHHHHHHhCC-Cccce-ecCcHHHHHHHHHHHHHHHHHhc-CCCCCCEEEEcCCCCcccHHH---HHHCCcEEEE
Q 001989 633 MFNNLGEWLCTITGF-DSFSL-QPNAGAAGEYAGLMVIRAYHKAR-GDHHRNVCIIPVSAHGTNPAT---AAMCGMKIVS 706 (985)
Q Consensus 633 ~~~e~~~~la~l~G~-~~~~~-~~~sGa~a~~a~l~air~~~~~~-g~~~~~~IIv~~~~Hg~~~~~---a~~~G~~vv~ 706 (985)
.+++..+.+.+.+|. +...+ +.++++++.. ++++.+.... -..++++|+++...|+++... ++..|++++.
T Consensus 43 ~l~~a~~~~~~~~~~~~~~~i~~t~g~teal~---~~~~~~~~~~~~~~~~~~vi~~~~e~ps~~~~~~~~~~~G~~v~~ 119 (382)
T TIGR03403 43 AIAEALDKLYKGINARDLDDIIITSCATESNN---WVLKGVYFDEILKGGKNHIITTEVEHPAVRATCAFLESLGVEVTY 119 (382)
T ss_pred HHHHHHHHHHHHcCcCCCCeEEEeCCHHHHHH---HHHHHHHHhhcccCCCCEEEEcCCccHHHHHHHHHHHHCCCEEEE
Confidence 344555556666676 34444 4455555553 3333321100 011346899998888877655 3468999999
Q ss_pred EcCCCCCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCccCCc
Q 001989 707 VGTDAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIGAD 785 (985)
Q Consensus 707 v~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~g~D 785 (985)
+|++++|.+|+++|+++++ +++++|++++| |++|.+. |+++|.++||++|+++++|++|..+...+ +..++++|
T Consensus 120 v~~~~~g~~d~~~l~~~i~---~~t~lv~~~~~~n~tG~~~-~~~~I~~la~~~g~~~ivD~a~~~g~~~~-~~~~~~~D 194 (382)
T TIGR03403 120 LPINEQGTITAEQVREAIT---EKTALVSVMWANNETGMIF-PIKEIGEICKERGVLFHTDAVQAIGKIPV-DVQKAGVD 194 (382)
T ss_pred EecCCCCCCCHHHHHHhcc---cCCeEEEEEcccCCCcccc-CHHHHHHHHHHcCCEEEEechhhcCCCcc-CccccCCC
Confidence 9998889999999999997 78899999998 5799998 89999999999999999999986443322 45578999
Q ss_pred EEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcH
Q 001989 786 VCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGS 865 (985)
Q Consensus 786 i~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~ 865 (985)
++++|+||++ |.||+|++++++... +.+.+.|.... ...+.++.++. +. .++...+..+ .
T Consensus 195 ~~~~s~~K~~------gp~G~g~l~vr~~~~--~~p~~~g~~~~---~~~~~gt~~~~----~~----~al~~al~~~-~ 254 (382)
T TIGR03403 195 FLSFSAHKFH------GPKGVGGLYIRKGVE--LTPLFHGGEHM---GGRRSGTLNVP----YI----VAMGEAMRLA-N 254 (382)
T ss_pred EEEEcchhhC------CCCceEEEEECCCCC--CCCcccCCCCC---CCcccCCcChH----HH----HHHHHHHHHH-H
Confidence 9999999976 446899999987642 11222221100 01112222221 11 1112333333 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCeeecCCCC-ceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCC---CC-C-
Q 001989 866 KGLTEASKIAILNANYMAKRLEKHYPILFRGVNG-TVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPT---MS-W- 939 (985)
Q Consensus 866 eGl~~~~~~~~~~a~~l~~~L~~g~~l~~~~~~~-~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~---~~-~- 939 (985)
+.+....++....++++.++|++...+.+.++.. ...+.+.+.++ +++..++.+.|.++||.++. |. .
T Consensus 255 ~~~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~L~~~gI~v~~g~~c~~~~ 328 (382)
T TIGR03403 255 EYLDFEKSHVRRLRDRLEDALLELPDVFVVGDREHRVPNTILISIK------GVEGEAMLWDLNKAGIAASTGSACASED 328 (382)
T ss_pred HhHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCCCCcCCEEEEEeC------CCCHHHHHHhhccCCEEEEchhccCCCC
Confidence 3455666777888899999997633332222211 11122345554 56788999999999999763 21 0
Q ss_pred --C-------------CCCEEEEeccCCCCHHHHHHHHccCChhHHHHhhcc
Q 001989 940 --P-------------VPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRLKM 976 (985)
Q Consensus 940 --p-------------~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~~~ 976 (985)
+ ..+.+|+|++.++|++|||+ +++.|++++++++.
T Consensus 329 ~~~~~v~~~~g~~~~~~~~~iR~s~~~~~t~~did~--~~~~l~~~~~~~~~ 378 (382)
T TIGR03403 329 LEANPVMVAIGADKELAHTAIRLSLSRFTTEEEIDY--TIEVFKKAVQRLRA 378 (382)
T ss_pred CCcCHHHHHcCCChHHhCeeEEEECCCCCCHHHHHH--HHHHHHHHHHHHHh
Confidence 0 12679999999999999999 88999999888764
|
Members of this family are the NifS-like cysteine desulfurase of the epsilon division of the Proteobacteria, similar to the NifS protein of nitrogen-fixing bacteria. Like NifS, and unlike IscS, this protein is found as part of a system of just two proteins, a cysteine desulfurase and a scaffold, for iron-sulfur cluster biosynthesis. This protein is called NifS by Olsen, et al. (PubMed:11123951), so we use this designation. |
| >PTZ00094 serine hydroxymethyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=5e-22 Score=233.68 Aligned_cols=302 Identities=19% Similarity=0.186 Sum_probs=202.2
Q ss_pred HHHHHH-HHHHHHHHhCCCccc----eecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHH-------
Q 001989 631 QEMFNN-LGEWLCTITGFDSFS----LQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAA------- 698 (985)
Q Consensus 631 ~~~~~e-~~~~la~l~G~~~~~----~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~------- 698 (985)
.+.+++ .++.++++||.+... +.+.||++++.+++.++. +++++||+++..|+.+...+.
T Consensus 78 ~~~iE~~ar~~~a~lf~a~~~~~~~~~~~~sgt~an~~v~~al~--------~~gd~Ii~~~~ehg~~l~~~~~l~~~~~ 149 (452)
T PTZ00094 78 VDKIENLCQKRALEAFGLDPEEWGVNVQPYSGSPANFAVYTALL--------QPHDRIMGLDLPSGGHLTHGFYTAKKKV 149 (452)
T ss_pred HHHHHHHHHHHHHHHhCCCcccceeecCCCchHHHHHHHHHHhc--------CCCCEEEecccccCCccccccccccccc
Confidence 345553 778999999987643 344678877755444431 367899999989998765421
Q ss_pred ---HCCcEEEEEcCCCCCCCCHHHHHHHHHhcCCCEEEEEEEcCCCccccccCHHHHHHHHHHcCCEEEEEccccccccC
Q 001989 699 ---MCGMKIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVG 775 (985)
Q Consensus 699 ---~~G~~vv~v~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~pn~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~ 775 (985)
..++++..++++.+|.+|+++|++++++. ++++|++++ +.+|... |+++|+++||++|++++||++|..++.+
T Consensus 150 ~~~~~~~~~~~~~~~~~g~id~~~L~~~l~~~--~~~lvi~~~-s~~g~~~-di~~I~~i~~~~ga~l~vDaaq~~G~i~ 225 (452)
T PTZ00094 150 SATSIYFESLPYQVNEKGLIDYDKLEELAKAF--RPKLIIAGA-SAYPRDI-DYKRFREICDSVGAYLMADIAHTSGLVA 225 (452)
T ss_pred ccceeeeeeeecccCCCCCcCHHHHHHHHHHh--CCCEEEEeC-CCCCCcc-CHHHHHHHHHHcCCEEEEeccchhcccc
Confidence 12245666777778999999999999742 344555544 3588888 9999999999999999999999766653
Q ss_pred CC---CCCccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHH
Q 001989 776 LT---SPGYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALI 852 (985)
Q Consensus 776 l~---~pg~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~ 852 (985)
.. .+. .++|++++|+|||| +||.+|++++++++.+.+.... .. ...+...+++ +...
T Consensus 226 ~~~~~~~~-~~~D~l~~S~hK~l------~GP~Gg~l~~~~~~~~~l~~~~-~~----------~~~p~~~G~~--~~~~ 285 (452)
T PTZ00094 226 AGVLPSPF-PYADVVTTTTHKSL------RGPRSGLIFYRKKVKPDIENKI-NE----------AVFPGLQGGP--HNHQ 285 (452)
T ss_pred CCCCCCCC-CCCcEEEcCCccCC------CCCCceEEEEecccchHHHHhh-cc----------ccCCCCCCCc--hHHH
Confidence 31 122 37999999999998 4675688888765443221110 00 0000000110 1112
Q ss_pred HHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCC
Q 001989 853 LPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYG 931 (985)
Q Consensus 853 ~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~G 931 (985)
+++..+.+..+...++.++.++..+++++|+++|++ ++++..++. . .+..++.+.. .+.+..++.+.|.++|
T Consensus 286 iaal~~al~~~~~~~~~~~~~~i~~l~~~l~~~L~~~g~~v~~~~~-~--~~~~~v~~~~----~~~~~~~~~~~L~~~g 358 (452)
T PTZ00094 286 IAAIAVQLKEVQSPEWKEYAKQVLKNAKALAAALEKRGYDLVTGGT-D--NHLVLVDLRP----FGITGSKMEKLLDAVN 358 (452)
T ss_pred HHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHhCCcEEecCCC-C--CceEeecCCc----CCCCHHHHHHHHHHCC
Confidence 222334556664556777788899999999999976 676653222 1 1334555541 3567889999998899
Q ss_pred CccCCCCCC------CCCEEEEeccCCCC----HHHHHHHHccCChhHHHHh
Q 001989 932 FHGPTMSWP------VPGTLMIEPTESES----KSWTGIVMLSSPSEKKLHR 973 (985)
Q Consensus 932 i~~~~~~~p------~~~~lris~t~~~t----~eeId~~~~~~~l~~~~~~ 973 (985)
|.++...-| .++++|++++.++| ++||++ +++.|++++..
T Consensus 359 I~vs~~~~p~~~~~~~~~~vRis~~~~tt~g~~~~di~~--l~~~l~~~~~~ 408 (452)
T PTZ00094 359 ISVNKNTIPGDKSALNPSGVRLGTPALTTRGAKEKDFKF--VADFLDRAVKL 408 (452)
T ss_pred cEEecccCCCCCcCCCCCeEEECCHHHHhCCCCHHHHHH--HHHHHHHHHHH
Confidence 998532111 24799999988887 999999 77888887764
|
|
| >PRK13580 serine hydroxymethyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.3e-22 Score=229.84 Aligned_cols=304 Identities=17% Similarity=0.178 Sum_probs=209.8
Q ss_pred HHHHHHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHH-----------------------HHhcCCCCCCEEEEc
Q 001989 630 YQEMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAY-----------------------HKARGDHHRNVCIIP 686 (985)
Q Consensus 630 ~~~~~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~-----------------------~~~~g~~~~~~IIv~ 686 (985)
..++...+.+...++||.+.+++++.||++|+.++++++..- -+-|..-.+|+|+..
T Consensus 93 ~d~ie~l~~~ra~~lf~a~~anvqp~Sg~~An~~v~~all~~~~~~p~~~~~g~~~~~~~~~~~~~~~~~~~~gd~i~~l 172 (493)
T PRK13580 93 VDTVEWEAAEHAKELFGAEHAYVQPHSGADANLVAFWAILAHKVESPALEKLGAKTVNDLTEEDWEALRAELGNQRLLGM 172 (493)
T ss_pred HHHHHHHHHHHHHHHhCCCcccccCCCcHHHHHHHHHHHhcccccCcchhccccccccccchhhhhhhhccCCCCEEEee
Confidence 444555566778899999999999999999998888877531 000000026889987
Q ss_pred CCCCcccHH---HHHHCC--cEEEEEcCCC-CCCCCHHHHHHHHHhcCCCEEEEEEEcCCCccccccCHHHHHHHHHHcC
Q 001989 687 VSAHGTNPA---TAAMCG--MKIVSVGTDA-KGNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNG 760 (985)
Q Consensus 687 ~~~Hg~~~~---~a~~~G--~~vv~v~~d~-~g~iD~e~L~~~i~~~~~~t~~Vvv~~pn~~G~i~~di~eI~~la~~~g 760 (985)
+..||-|.. .....| ++++.+++++ +|.+|++++++.+. ++++.|++++.+.++... |+++|+++|+++|
T Consensus 173 ~l~~GGHlthg~~~n~~~~~~~~~~y~vd~~~g~iD~d~l~~~~~---~~~plvii~g~S~~~~~~-dl~~i~eia~~~g 248 (493)
T PRK13580 173 SLDSGGHLTHGFRPNISGKMFHQRSYGVDPDTGLLDYDEIAALAR---EFKPLILVAGYSAYPRRV-NFAKLREIADEVG 248 (493)
T ss_pred cCCCCCeeecCcccchhhheeeeEecccCcccCccCHHHHHHHHh---hcCCEEEEeCccccCCCc-CHHHHHHHHHHcC
Confidence 777765421 122233 5777778874 58999999999998 677778888765445555 8999999999999
Q ss_pred CEEEEEccccccccCCC------CCCccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCC---CCccccCCCCC
Q 001989 761 GQVYMDGANMNAQVGLT------SPGYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLP---SHPVVSTGGIP 831 (985)
Q Consensus 761 alliVD~a~~~~~~~l~------~pg~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp---~~~~g~~~~~~ 831 (985)
++++||+||..++.+.. .| ..++||+++++|||| +||.+|++++++++.+++. +.++|
T Consensus 249 A~L~VD~AH~~Gligg~~~~~~~~~-~~~~D~vtgT~hKaL------~GP~GG~I~~~~~l~~~L~~a~P~i~g------ 315 (493)
T PRK13580 249 AVLMVDMAHFAGLVAGKVFTGDEDP-VPHADIVTTTTHKTL------RGPRGGLVLAKKEYADAVDKGCPLVLG------ 315 (493)
T ss_pred CEEEEECchhhceeccccchhhcCC-CCCCcEEEeCChhhc------cCCCeEEEEecHHHHHHHhhCCCcccC------
Confidence 99999999987664421 12 236899999999998 4687799999987766551 11111
Q ss_pred CCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEec
Q 001989 832 APEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLR 910 (985)
Q Consensus 832 ~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~ 910 (985)
+.. .+..++.+.+ +..+....++++.++..+|+++|++.|.+ |+.+...+ ...|.+.+.+.
T Consensus 316 ---------g~l-----~p~iAA~avA-l~e~~~~ef~~y~~~l~~Na~~La~~L~~~G~~vv~gg---TdshIV~V~lg 377 (493)
T PRK13580 316 ---------GPL-----PHVMAAKAVA-LAEARTPEFQKYAQQVVDNARALAEGFLKRGARLVTGG---TDNHLVLIDVT 377 (493)
T ss_pred ---------CCc-----cHHHHHHHHH-HHHHhCccHHHHHHHHHHHHHHHHHHHHhcCCCccCCC---CCCCEEEEEeC
Confidence 111 1122222333 33333234466788999999999999987 88775322 23456667765
Q ss_pred CccccCCCCHHHHHHHHHHCCCccCCCCCC-C------CCEEEEeccC----CCCHHHHHHHHccCChhHHHHhh
Q 001989 911 GLKNTAGIEPEDVAKRLMDYGFHGPTMSWP-V------PGTLMIEPTE----SESKSWTGIVMLSSPSEKKLHRL 974 (985)
Q Consensus 911 ~~~~~~g~~~~~v~~~L~~~Gi~~~~~~~p-~------~~~lris~t~----~~t~eeId~~~~~~~l~~~~~~~ 974 (985)
. .+.....+.+.|.+.||.++....| + ...|||+++. .++++||++ +++.|.+++...
T Consensus 378 ~----~~~~g~~a~~~L~e~GI~vn~i~~Ptvp~g~~~~srLRIg~~A~ttrg~teedi~~--iad~l~~~l~~~ 446 (493)
T PRK13580 378 S----FGLTGRQAESALLDAGIVTNRNSIPSDPNGAWYTSGIRLGTPALTTLGMGSDEMDE--VAELIVKVLSNT 446 (493)
T ss_pred C----HHHHHHHHHHHHHHCCeEEccccCCCCCCCCCCCceEEeccchhhhcCCCHHHHHH--HHHHHHHHHHhh
Confidence 2 1223457778999999998765554 1 4679999998 456999999 778888877654
|
|
| >COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.1e-21 Score=218.65 Aligned_cols=325 Identities=18% Similarity=0.228 Sum_probs=237.8
Q ss_pred ecCCCCCCCCCcHHHHHHHHhCCccccccCCChhhHhhhHHHHHHHHHHHHHHhcCCCCc-ceeeccchHHHHHHHHHHh
Q 001989 170 FIGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMS-NASLLDEGTAAAEAMAMCN 248 (985)
Q Consensus 170 ~lG~g~y~~~~p~~v~~~i~~~~~~~t~~~pyq~e~sqg~l~~i~e~q~~ia~L~g~~~~-~~sl~~~~ta~~ea~~~a~ 248 (985)
.+..| |.-+|+.|.++ ..++-. +-+.|+ -...+.+.++.+-.+++.+-. -+.+..+||.++||++.++
T Consensus 8 Ll~PG--P~~v~~~V~~a-m~~~~~----~h~s~~----F~~~~~~~~~~L~~v~~t~~~~~~ll~gsGt~amEAav~sl 76 (383)
T COG0075 8 LLTPG--PVPVPPRVLLA-MARPMV----GHRSPD----FVGIMKEVLEKLRKVFGTENGDVVLLSGSGTLAMEAAVASL 76 (383)
T ss_pred eeeCC--CCCCCHHHHHH-hcCCCC----CCCCHH----HHHHHHHHHHHHHHHhcCCCCcEEEEcCCcHHHHHHHHHhc
Confidence 45666 55688888743 444421 123333 235566777888899998743 3445588999999988764
Q ss_pred hhhcCCCCEEEE-cCCCChhHHHHHHHhhcCCCeEEEEeC--------chhhhc-cC--CCEeEEEEEcC-CCCeeeccH
Q 001989 249 NIQKGKKKTFII-ASNCHPQTIDICITRADGFDIKVVVSD--------LKDIDY-KS--GDVCGVLVQYP-GTEGEVLDY 315 (985)
Q Consensus 249 ~~~~~~g~~Vlv-~~~~H~s~~~~~~~~a~~~gi~v~~v~--------~~~l~~-l~--~~t~~V~v~~p-n~~G~v~di 315 (985)
- .+||+|++ ..+.|.....-+ ++.+|.+++.++ ++++++ ++ ++.++|.++|. +++|.++|+
T Consensus 77 ~---~pgdkVLv~~nG~FG~R~~~i---a~~~g~~v~~~~~~wg~~v~p~~v~~~L~~~~~~~~V~~vH~ETSTGvlnpl 150 (383)
T COG0075 77 V---EPGDKVLVVVNGKFGERFAEI---AERYGAEVVVLEVEWGEAVDPEEVEEALDKDPDIKAVAVVHNETSTGVLNPL 150 (383)
T ss_pred c---CCCCeEEEEeCChHHHHHHHH---HHHhCCceEEEeCCCCCCCCHHHHHHHHhcCCCccEEEEEeccCcccccCcH
Confidence 2 28899865 557886555444 456787777764 356776 54 67888988876 889999999
Q ss_pred HHHHHHHHhCCcEEEEEecCccccCC-CCCCcccceEEEecC-ccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeec
Q 001989 316 GDFIKNAHANGVKVVMATDLLALTIL-KPPGELGADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSID 393 (985)
Q Consensus 316 ~~I~~~a~~~galliV~a~~~~lg~l-~~~~~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d 393 (985)
++|+++|+++|++++||+ ..|+|.. ..+.+||+|+++.++ |.|+.| ||+|++.++++.++.+..+
T Consensus 151 ~~I~~~~k~~g~l~iVDa-VsS~Gg~~~~vd~wgiDv~itgSQK~l~~P-----PGla~v~~S~~a~e~~~~~------- 217 (383)
T COG0075 151 KEIAKAAKEHGALLIVDA-VSSLGGEPLKVDEWGIDVAITGSQKALGAP-----PGLAFVAVSERALEAIEER------- 217 (383)
T ss_pred HHHHHHHHHcCCEEEEEe-cccCCCcccchhhcCccEEEecCchhccCC-----CccceeEECHHHHHHHhcC-------
Confidence 999999999999999965 4577755 467899999999999 778766 8899999999988877322
Q ss_pred CCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCC-
Q 001989 394 SSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGL- 472 (985)
Q Consensus 394 ~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~- 472 (985)
..++|+|+|..-.+.......|+.....+.++++..++ ..+..||++++.+|+.+++++++++++++| ++++.+
T Consensus 218 --~~~~~ylDL~~~~~~~~~~~~~p~Tppv~~i~aL~~al--~~i~~EGle~r~~RH~~~~~a~r~~~~alG-l~~~~~~ 292 (383)
T COG0075 218 --KHPSFYLDLKKWLKYMEKKGSTPYTPPVNLIYALREAL--DLILEEGLEARIARHRRLAEALRAGLEALG-LELFADP 292 (383)
T ss_pred --CCCceeecHHHHHHHHhhcCCCCCCCCHHHHHHHHHHH--HHHHHhhHHHHHHHHHHHHHHHHHHHHHcC-CccccCc
Confidence 12258998865444443335666666668899998887 777789999999999999999999999998 998852
Q ss_pred -CCcceE-EEecCC---HHHHHHHHHH-cCceeee----ecCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 473 -PFFDTV-KVKCAD---AHAIASAAYK-IEMNLRV----VDSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 473 -~~~~~~-~~~~~~---~~~v~~~L~~-~GI~~~~----~~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
...+++ ++..|. ..++...|.+ +|+.+.. +.+..+||..+=.-+.+|+...+.+|+.
T Consensus 293 ~~~s~tvta~~~P~g~~~~~~~~~~~~~~g~~i~gg~~~l~gkifRIGhMG~~~~~dv~~~l~ale~ 359 (383)
T COG0075 293 ERRSPTVTAIKVPEGVDDKKVRRALLKEYGVEIAGGQGPLKGKIFRIGHMGNVRPEDVLAALAALEA 359 (383)
T ss_pred ccCCCceEEEECCCCCCcHHHHHHHHHhCCEEecccccccCccEEEEecCccCCHHHHHHHHHHHHH
Confidence 223344 355654 3445555554 5887743 2356899998888899999999999874
|
|
| >TIGR01977 am_tr_V_EF2568 cysteine desulfurase family protein | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.5e-21 Score=224.83 Aligned_cols=307 Identities=16% Similarity=0.125 Sum_probs=206.1
Q ss_pred hHHHHHHHHHHHHHHHhCCCcc-c-eecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHH----HHHHCCc
Q 001989 629 GYQEMFNNLGEWLCTITGFDSF-S-LQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPA----TAAMCGM 702 (985)
Q Consensus 629 G~~~~~~e~~~~la~l~G~~~~-~-~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~----~a~~~G~ 702 (985)
+..+.+.++++++++++|.+.. . ++.+++++++..+ ++.+ .+++++|+++...|+++.. .++..|+
T Consensus 41 ~~~~~~~~~~~~la~~~~~~~~~~v~~~~g~t~al~~~---~~~~-----~~~gd~vl~~~~~~~~~~~~~~~~~~~~g~ 112 (376)
T TIGR01977 41 RASREVEETRQLLAKLFNAPSSAHVVFTNNATTALNIA---LKGL-----LKEGDHVITTPMEHNSVARPLECLKEQIGV 112 (376)
T ss_pred HHHHHHHHHHHHHHHHhCcCCCCeEEEeCCHHHHHHHH---HHhc-----cCCCCEEEECcchhhHHHHHHHHHHHHcCc
Confidence 3446678899999999998653 3 4445566665433 3322 1367899998887876543 2455699
Q ss_pred EEEEEcCCCCCCCCHHHHHHHHHhcCCCEEEEEEEcCC-CccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCc
Q 001989 703 KIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPS-THGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGY 781 (985)
Q Consensus 703 ~vv~v~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~pn-~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~ 781 (985)
+++.++.++++.+|+++|+++++ +++++|++++|+ .+|.+. |+++|.++||++|++++||++|..+...+ ....
T Consensus 113 ~~~~v~~~~~~~~d~~~l~~~~~---~~~~~v~~~~~~n~tG~~~-~~~~i~~l~~~~~~~livD~a~~~g~~~~-~~~~ 187 (376)
T TIGR01977 113 EITIVKCDNEGLISPERIKRAIK---TNTKLIVVSHASNVTGTIL-PIEEIGELAQENGIFFILDAAQTAGVIPI-DMTE 187 (376)
T ss_pred EEEEEecCCCCCcCHHHHHHhcC---CCCeEEEEECCCCCccccC-CHHHHHHHHHHcCCEEEEEhhhccCccCC-Cchh
Confidence 99999998888999999999997 789999999985 699998 89999999999999999999996544333 3356
Q ss_pred cCCcEEEeCCcccccccCCCCCCceEEEEEccccc-CcCCCCcccc---CCCC---CCCCCCCCCCCCCCcchhhhHHHH
Q 001989 782 IGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLA-PFLPSHPVVS---TGGI---PAPEKSQPLGTIAAAPWGSALILP 854 (985)
Q Consensus 782 ~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~-~~lp~~~~g~---~~~~---~~~~~~~~~~~i~s~~~g~~~~~~ 854 (985)
+++|++++++|||++.| +|.|+++++++.. ..+.....+. ..+. ...+.+.++.++ ..+.
T Consensus 188 ~~~D~~~~s~~K~l~~p-----~g~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~t~~~--------~~~~ 254 (376)
T TIGR01977 188 LAIDMLAFTGHKGLLGP-----QGTGGLYIREGIKLKPLKSGGTGSHSALIDQPSELPDRFESGTLNT--------PGIA 254 (376)
T ss_pred cCCCEEEecccccccCC-----CCceEEEEcCCcCcCceecCCCccccccccccccchhhccCCCCCH--------HHHH
Confidence 78999999999998522 3678888876531 1111100000 0000 000111122111 1223
Q ss_pred HHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc--cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHC-C
Q 001989 855 ISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK--HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDY-G 931 (985)
Q Consensus 855 ~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~--g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~-G 931 (985)
+..+.++.+...|+..+.++..++++++.++|++ ++.+..+.+.......+.+.++ +.+..++.+.|.++ |
T Consensus 255 a~~~al~~~~~~g~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~~~~------~~~~~~~~~~L~~~~g 328 (376)
T TIGR01977 255 GLNAGIKFIEKIGIANIAKKECMLTEKLLNGLREINKVKIYGPADPANRVGVVSFTVE------GIDSEEVADILDEKFD 328 (376)
T ss_pred HHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCCccccCCeEEEEEC------CCCHHHHHHHHhccCC
Confidence 3345667777778888888899999999999986 3333221111111223344443 46788999999987 8
Q ss_pred CccCC---CC--------CCCCCEEEEeccCCCCHHHHHHHHccCChhH
Q 001989 932 FHGPT---MS--------WPVPGTLMIEPTESESKSWTGIVMLSSPSEK 969 (985)
Q Consensus 932 i~~~~---~~--------~p~~~~lris~t~~~t~eeId~~~~~~~l~~ 969 (985)
|.+.. +. ....+.+|++++.++|.+|||+ +++.|++
T Consensus 329 i~v~~g~~~~~~~~~~~g~~~~~~iRis~~~~~t~~dv~~--~~~~l~~ 375 (376)
T TIGR01977 329 IATRTGLHCAPLAHKTIGTFATGTIRLSLGYFNTEEEIEK--LLEALSE 375 (376)
T ss_pred EEEEcccccchHHHHHhCCCCCCeEEEecCCCCCHHHHHH--HHHHHhh
Confidence 88642 11 0124789999999999999999 6666654
|
This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulfurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N-terminus. The function of this subfamily is unknown. |
| >PRK02948 cysteine desulfurase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.9e-21 Score=222.90 Aligned_cols=292 Identities=14% Similarity=0.092 Sum_probs=210.9
Q ss_pred HhhhHHHHHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhh-cCCCCEEEEcCCCChhHHHHHHHhhcCCCeEE
Q 001989 205 IAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQ-KGKKKTFIIASNCHPQTIDICITRADGFDIKV 283 (985)
Q Consensus 205 ~sqg~l~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~-~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v 283 (985)
....+...+.++++.+|+++|.++.++.+++|+|.++..++.++.-. .+++++|+++..+||++...++. ++..|+++
T Consensus 37 ~~~~~~~~~~~~r~~la~~~g~~~~~i~~~~g~t~a~~~~~~~~~~~~~~~g~~vv~~~~~h~s~~~~~~~-~~~~g~~v 115 (381)
T PRK02948 37 IGGTASSLLQVCRKTFAEMIGGEEQGIYFTSGGTESNYLAIQSLLNALPQNKKHIITTPMEHASIHSYFQS-LESQGYTV 115 (381)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCeEEEeCcHHHHHHHHHHHHHHhccCCCCEEEECCcccHHHHHHHHH-HHhCCCEE
Confidence 33445577889999999999998888988899888776655443210 13679999999999999998865 45578888
Q ss_pred EEeCc--------hhhhc-cCCCEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCC-CCCCcccceEE
Q 001989 284 VVSDL--------KDIDY-KSGDVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTIL-KPPGELGADIV 352 (985)
Q Consensus 284 ~~v~~--------~~l~~-l~~~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l-~~~~~~GaDi~ 352 (985)
+.++. +++++ +.+++++|++++| |.+|.+.|+++|+++||++|++++|| ..+++|.. ....++|+|++
T Consensus 116 ~~v~~~~~~~~d~~~l~~~l~~~~~lv~~~~~~n~tG~~~~~~~I~~l~~~~~~~vivD-~~~~~g~~~~~~~~~~~d~~ 194 (381)
T PRK02948 116 TEIPVDKSGLIRLVDLERAITPDTVLASIQHANSEIGTIQPIAEIGALLKKYNVLFHSD-CVQTFGKLPIDVFEMGIDSL 194 (381)
T ss_pred EEEeeCCCCCCCHHHHHHhcCCCCEEEEEECCcCCcEeehhHHHHHHHHHHcCCEEEEE-ChhhccccccCcccCCCCEE
Confidence 88764 34555 6778999999998 68999999999999999999999996 34566543 23467999999
Q ss_pred EecCccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHH
Q 001989 353 VGSAQRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAA 432 (985)
Q Consensus 353 v~s~k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa 432 (985)
+.+++|+. |.||+|++++++++. +.....| . .+..+.+.+|.|+ .+..++.++
T Consensus 195 ~~s~~K~~-----gp~G~G~l~~~~~~~--~~~~~~~-------~----------~~~~~~~~~t~~~---~~~~a~~~a 247 (381)
T PRK02948 195 SVSAHKIY-----GPKGVGAVYINPQVR--WKPVFPG-------T----------THEKGFRPGTVNV---PGIAAFLTA 247 (381)
T ss_pred EecHHhcC-----CCCcEEEEEEcCCCC--CCCcccC-------C----------CCCCCcCCCCccH---HHHHHHHHH
Confidence 99984453 335689999987641 1110001 0 0112235677776 345555555
Q ss_pred HHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEc--CCC--Cc-ceEEEecCC--HHHHHHHHHHcCceeeee---
Q 001989 433 MYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQ--GLP--FF-DTVKVKCAD--AHAIASAAYKIEMNLRVV--- 502 (985)
Q Consensus 433 ~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~--~~~--~~-~~~~~~~~~--~~~v~~~L~~~GI~~~~~--- 502 (985)
+ ..+ .++++++.+++.++.++++++|+++| +++. +.+ .. ..+.+..++ +.++...|.++||.++..
T Consensus 248 l--~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~-~~v~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~gI~v~~g~~c 323 (381)
T PRK02948 248 A--ENI-LKNMQEESLRFKELRSYFLEQIQTLP-LPIEVEGHSTSCLPHIIGVTIKGIEGQYTMLECNRRGIAISTGSAC 323 (381)
T ss_pred H--HHH-HHHHHHHHHHHHHHHHHHHHHHhcCC-CCEEEeCCCccCcCCEEEEEeCCCCHHHHHHhcccCCEEEEchHhc
Confidence 4 222 23678899999999999999999987 6543 211 12 234455554 778888898899988631
Q ss_pred --------------------cCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 503 --------------------DSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 503 --------------------~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
..+.+|+|++.+||++|+|+++++|..
T Consensus 324 ~~~~~~p~~~~~~~~~~~~~~~~~lRis~~~~~t~~di~~l~~~l~~ 370 (381)
T PRK02948 324 QVGKQEPSKTMLAIGKTYEEAKQFVRFSFGQQTTKDQIDTTIHALET 370 (381)
T ss_pred CCCCCCCCHHHHHcCCChHHhCceEEEEcCCCCCHHHHHHHHHHHHH
Confidence 036899999999999999999999974
|
|
| >TIGR03799 NOD_PanD_pyr putative pyridoxal-dependent aspartate 1-decarboxylase | Back alignment and domain information |
|---|
Probab=99.90 E-value=7.1e-21 Score=224.57 Aligned_cols=375 Identities=14% Similarity=0.161 Sum_probs=232.8
Q ss_pred CCccccCCCCHHHHHHHHHHHhccccCcccccccccccccCCCccc---cccccccccccccCCCCchhhhhhHHHHHHH
Q 001989 560 THPVFNKYHTEHELLRYIHLLQSKELSLCHSMIPLGSCTMKLNATT---EMMPVTWPSFANIHPFAPADQAQGYQEMFNN 636 (985)
Q Consensus 560 ~~p~~~~~~se~e~~~~l~~l~~~~~~~~~~~~~lG~~t~~~~~~~---~~~~~~~~~f~~~~p~~p~e~~~G~~~~~~e 636 (985)
.+| +.+.+..+.++.+.+.--.+........|+|+-+..+++.. ..+.. ..|-+.+.- +.++...++..+
T Consensus 61 ~~p--~~~~~~~~~~~~~~~~~~~~~~~~~hP~f~g~~~~~~p~~~~~l~~l~~----~lN~n~~~~-~~spa~t~lE~~ 133 (522)
T TIGR03799 61 EIP--EQPTFVSEHTQFLLDKLVAHSVHTASPSFIGHMTSALPYFMLPLSKLMV----ALNQNLVKI-ETSKAFTPLERQ 133 (522)
T ss_pred CCC--CCCCChHHHHHHHHHHHHcCCCCCCCCCeEEeccCCCchHHHHHHHHHH----HhcCCccee-ecCcchHHHHHH
Confidence 456 56677778888855443333333345677885333222211 11111 112122222 557788899999
Q ss_pred HHHHHHHHhCCC------------c-c-ceecCcHHHHHHHHHHHHHHHHHhc-----CC-------------CCCCEEE
Q 001989 637 LGEWLCTITGFD------------S-F-SLQPNAGAAGEYAGLMVIRAYHKAR-----GD-------------HHRNVCI 684 (985)
Q Consensus 637 ~~~~la~l~G~~------------~-~-~~~~~sGa~a~~a~l~air~~~~~~-----g~-------------~~~~~II 684 (985)
+..|++++++.. . . .++.++|++|++.++.++|...... +. .++..|+
T Consensus 134 v~~wl~~l~~~~~~~~~~~~~~~~~~~~G~~tsGGS~ANl~Al~~AR~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~v~ 213 (522)
T TIGR03799 134 VLGMMHHLVYGQDDDFYRKWMHSADHSLGAFCSGGTVANITALWVARNRLLKADGDFKGVAREGLFAALKHYGYDGLAIL 213 (522)
T ss_pred HHHHHHHHhccCcccchhhcccCCCCCCeEEcCchHHHHHHHHHHHHHHhccccccccccccccchhhhhhccCCceEEE
Confidence 999999998521 1 1 2456678888888888888643110 00 1245788
Q ss_pred EcCCCCcccHHHHHHCCc---EEEEEcCCCCCCCCHHHHHHHHHhc-CCC--EEEEEEEcCC-CccccccCHHHHHHHHH
Q 001989 685 IPVSAHGTNPATAAMCGM---KIVSVGTDAKGNINIEELRKAAEAN-RDN--LSTLMVTYPS-THGVYEEGIDEICKIIH 757 (985)
Q Consensus 685 v~~~~Hg~~~~~a~~~G~---~vv~v~~d~~g~iD~e~L~~~i~~~-~~~--t~~Vvv~~pn-~~G~i~~di~eI~~la~ 757 (985)
+++.+|.++.+++...|+ +++.||+|++|++|+++|+++|++. +.+ +.+|+.+..+ .+|.++ |+++|+++|+
T Consensus 214 ~S~~~H~S~~kaa~~lglg~~~v~~vp~d~~g~~d~~~L~~~i~~~~~~g~~~~~vvataGtt~tGaiD-pl~eIa~i~~ 292 (522)
T TIGR03799 214 VSERGHYSLGKAADVLGIGRDNLIAIKTDANNRIDVDALRDKCAELAEQNIKPLAIVGVAGTTETGNID-PLDEMADIAQ 292 (522)
T ss_pred ECCCchHHHHHHHHHcCCCcccEEEEEeCCCCcCCHHHHHHHHHHHHHCCCCcEEEEEEecCcCCCCcC-CHHHHHHHHH
Confidence 899999999999988888 8999999999999999999999631 123 3444444544 599999 8999999999
Q ss_pred HcCCEEEEEccccccccCCCC------CCccCCcEEEeCCcccccccCCCCCCceEEEEEcc-cccCcCCC---Ccc-cc
Q 001989 758 DNGGQVYMDGANMNAQVGLTS------PGYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKK-HLAPFLPS---HPV-VS 826 (985)
Q Consensus 758 ~~galliVD~a~~~~~~~l~~------pg~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~-~l~~~lp~---~~~-g~ 826 (985)
++|+|+|||+|+..+.. +.. .+-.++|++++++|||+..|+ |+|++++++ .+.+.+.. ++. ..
T Consensus 293 ~~g~~lHVDaA~gg~~~-~~~~~r~~l~gle~aDSit~d~HK~l~~P~-----g~G~llvr~~~~~~~~~~~~~Yl~~~~ 366 (522)
T TIGR03799 293 ELGCHFHVDAAWGGATL-LSNTYRHLLKGIERADSVTIDAHKQLYVPM-----GAGMVLFKDPALMSAIEHHAEYILRKG 366 (522)
T ss_pred HcCCeEEEEchhhhHHH-hCHHHHHHhcCchhCCEEEEChhhcCCcCc-----ccEEEEEeCHHHHHHhccCcchhcCCC
Confidence 99999999999842221 111 122479999999999986443 567888875 33222211 110 00
Q ss_pred CCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc--cCCeeecCCCCceeeE
Q 001989 827 TGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK--HYPILFRGVNGTVAHE 904 (985)
Q Consensus 827 ~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~--g~~l~~~~~~~~~~~~ 904 (985)
..+...+ .+..+.. ..+...|+.|+.+|.+|++++.++.+++++|+.+.|++ +++++.+ +..+.
T Consensus 367 ~~d~~~~-------~legsR~---~~al~lw~aL~~lG~~G~~~ii~~~~~la~~l~~~L~~~~~~el~~~----p~l~i 432 (522)
T TIGR03799 367 SKDLGSH-------TLEGSRP---GMAMLVYAGLHIIGRKGYELLIDQSIEKAKYFADLIQQQPDFELVTE----PELCL 432 (522)
T ss_pred CCccccc-------eeecCcc---hHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhCCCeEEecC----CCccE
Confidence 0010000 1111111 12245799999999999999999999999999999976 4555432 23444
Q ss_pred EEEEecC--cccc-----------CC--C--CHHHHHHHHHHCCCc-cCC--CC---CCC--CCEEEEecc-CCCCHHHH
Q 001989 905 FIVDLRG--LKNT-----------AG--I--EPEDVAKRLMDYGFH-GPT--MS---WPV--PGTLMIEPT-ESESKSWT 958 (985)
Q Consensus 905 ~iv~~~~--~~~~-----------~g--~--~~~~v~~~L~~~Gi~-~~~--~~---~p~--~~~lris~t-~~~t~eeI 958 (985)
+++++.+ .... .+ . -...+.+++.+.|.. ++. +. |.- ...+|+++. ..+|+++|
T Consensus 433 v~Fr~~p~~~~~~l~~~~~~~~~~~~~~~~~ln~~i~~~~~~~G~~~vs~t~l~~~~~~g~~~~~lR~~~~np~tt~~~i 512 (522)
T TIGR03799 433 LTYRYVPEEVQQALAKADEEQREKINELLDRLTKFIQKRQREAGKSFVSRTRLTPAQYDHQPTVVFRVVLANPLTTHEIL 512 (522)
T ss_pred EEEEEeChhhcccccccchhhhhhHHHHHHHHHHHHHHHHHhcCCEEEEEEEecccccCCCCcEEEEEEecCCCCCHHHH
Confidence 5555431 0000 00 0 013566677777765 321 11 110 146899885 67889999
Q ss_pred HHHH
Q 001989 959 GIVM 962 (985)
Q Consensus 959 d~~~ 962 (985)
+.++
T Consensus 513 ~~~l 516 (522)
T TIGR03799 513 QDIL 516 (522)
T ss_pred HHHH
Confidence 9833
|
This enzyme is proposed here to be a form of aspartate 1-decarboxylase, pyridoxal-dependent, that represents a non-orthologous displacement to the more widely distributed pyruvoyl-dependent form (TIGR00223). Aspartate 1-decarboxylase makes beta-alanine, used usually in pathothenate biosynthesis, by decarboxylation from asparatate. A number of species with the PanB and PanC enzymes, however, lack PanD. This protein family occurs in a number of Proteobacteria that lack PanD. This enzyme family appears to be a pyridoxal-dependent enzyme (see pfam00282). The family was identified by Partial Phylogenetic Profiling; members in Geobacter sulfurreducens, G. metallireducens, and Pseudoalteromonas atlantica are clustered with the genes for PanB and PanC. We suggest the gene symbol panP (panthothenate biosynthesis enzyme, Pyridoxal-dependent). |
| >cd06450 DOPA_deC_like DOPA decarboxylase family | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.2e-22 Score=227.62 Aligned_cols=292 Identities=18% Similarity=0.204 Sum_probs=204.9
Q ss_pred hhhHHHHHHHHHHHHHHHhCCC-c--cceecCcHHHHHHHHHHHHHHHHHh----c--CCCCCCEEEEcCCCCcccHHHH
Q 001989 627 AQGYQEMFNNLGEWLCTITGFD-S--FSLQPNAGAAGEYAGLMVIRAYHKA----R--GDHHRNVCIIPVSAHGTNPATA 697 (985)
Q Consensus 627 ~~G~~~~~~e~~~~la~l~G~~-~--~~~~~~sGa~a~~a~l~air~~~~~----~--g~~~~~~IIv~~~~Hg~~~~~a 697 (985)
+.+..++.+++.+++++++|.+ . ..+++++|++|+..++.+++..... . +..++++|++++.+|.++...+
T Consensus 33 ~~~~~~le~~~~~~~~~~~g~~~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~h~~~~~~~ 112 (345)
T cd06450 33 SPAATEMEAEVVNWLAKLFGLPSEDADGVFTSGGSESNLLALLAARDRARKRLKAGGGRGIDKLVIVCSDQAHVSVEKAA 112 (345)
T ss_pred CchhHHHHHHHHHHHHHHhCCCCCCCCEEEeCChhHHHHHHHHHHHHHhhhhhhcccccccCCeEEEEcCcchhHHHHHH
Confidence 5678888999999999999986 2 2456677888876666655432100 0 0012347888998998888888
Q ss_pred HHCCcEEEEEcCCCCCCCCHHHHHHHHHh---cCCCEEEEEEEcCC-CccccccCHHHHHHHHHHcCCEEEEEccccccc
Q 001989 698 AMCGMKIVSVGTDAKGNINIEELRKAAEA---NRDNLSTLMVTYPS-THGVYEEGIDEICKIIHDNGGQVYMDGANMNAQ 773 (985)
Q Consensus 698 ~~~G~~vv~v~~d~~g~iD~e~L~~~i~~---~~~~t~~Vvv~~pn-~~G~i~~di~eI~~la~~~galliVD~a~~~~~ 773 (985)
...|.+++.+|+++++.+|+++|++++++ ...++++|++++|+ .+|.++ |+++|+++|+++|+++|+|+++..+.
T Consensus 113 ~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~~~~~~v~~~~~~~~tG~~~-~~~~i~~~~~~~~~~l~vD~a~~~~~ 191 (345)
T cd06450 113 AYLDVKVRLVPVDEDGRMDPEALEAAIDEDKAEGLNPIMVVATAGTTDTGAID-PLEEIADLAEKYDLWLHVDAAYGGFL 191 (345)
T ss_pred HHHhcCeEEeeeCCCCCcCHHHHHHHHHHHHHCCCCcEEEEEecccCCCCCCC-CHHHHHHHHHHhCCeEEEechhhHHH
Confidence 88899999999988889999999999973 11178888888885 699998 89999999999999999999985433
Q ss_pred cCCCCC-----CccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchh
Q 001989 774 VGLTSP-----GYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWG 848 (985)
Q Consensus 774 ~~l~~p-----g~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g 848 (985)
...... ...++|++++++||+++.| +|+|+++++
T Consensus 192 ~~~~~~~~~~~~~~~~d~~~~s~~K~l~~p-----~g~g~~~~~------------------------------------ 230 (345)
T cd06450 192 LPFPEPRHLDFGIERVDSISVDPHKYGLVP-----LGCSAVLVR------------------------------------ 230 (345)
T ss_pred hhChhhHHHhcCccccCEEEEchhHhhCCC-----cchHHHHHH------------------------------------
Confidence 221111 1136899999999998533 355555433
Q ss_pred hhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhccCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHH
Q 001989 849 SALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLM 928 (985)
Q Consensus 849 ~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~ 928 (985)
+...|+.+..++.+|++++.++..++++++.+.|++...+...++ +..+.+.+.+++- ...+.+..++.++|.
T Consensus 231 ----~~~~~~~l~~l~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~--~~~~iv~f~~~~~-~~~~~~~~~i~~~L~ 303 (345)
T cd06450 231 ----ALKLWATLRRFGRDGYGEHIDRIVDLAKYLAELIRADPGFELLGE--PNLSLVCFRLKPS-VKLDELNYDLSDRLN 303 (345)
T ss_pred ----HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecC--CceeEEEEEECCc-chhhHHHHHHHHHHH
Confidence 122456778888999999999999999999999986322211121 1233344554310 000245678999999
Q ss_pred HCCC-ccCCCCCCCCCEEEEeccCC-CCHHHHHHHHccCChhH
Q 001989 929 DYGF-HGPTMSWPVPGTLMIEPTES-ESKSWTGIVMLSSPSEK 969 (985)
Q Consensus 929 ~~Gi-~~~~~~~p~~~~lris~t~~-~t~eeId~~~~~~~l~~ 969 (985)
++|+ +++...++.++.+|++++.. +|++|||+ +++.|++
T Consensus 304 ~~g~~~~~~~~~~~~~~lRis~~~~~~t~~di~~--l~~~l~~ 344 (345)
T cd06450 304 ERGGWHVPATTLGGPNVLRFVVTNPLTTRDDADA--LLEDIER 344 (345)
T ss_pred hcCCEEEEeeEECCeEEEEEEecCCCCCHHHHHH--HHHHHHh
Confidence 9964 44433333357899999986 59999999 6666643
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine. |
| >COG0156 BioF 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.5e-22 Score=224.78 Aligned_cols=316 Identities=18% Similarity=0.214 Sum_probs=232.9
Q ss_pred CCccceecCCCCCCCCCcHHHHHHHHhCCccccccCCChhhHhhhHHHHHHHHHHHHHHhcCCCCcceeeccchHHHHHH
Q 001989 164 NKVYKSFIGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEA 243 (985)
Q Consensus 164 n~~~~~~lG~g~y~~~~p~~v~~~i~~~~~~~t~~~pyq~e~sqg~l~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea 243 (985)
|.+.++|||...+|..+.+++. .+.. |.+..+ .++...|+.+.+.++++.+|+++|.+. +.+|.+|-.+..+
T Consensus 43 nf~SNdYLGLa~~~~~~~a~~~-~~~~---~g~g~~--gsR~i~G~~~~h~~LE~~lA~f~g~e~--al~f~SGy~AN~~ 114 (388)
T COG0156 43 NFCSNDYLGLASHPELIEAAKA-AIRR---YGVGAG--GSRLISGTSDLHVELEEELADFLGAEA--ALLFSSGFVANLG 114 (388)
T ss_pred eeeccCcccccCCHHHHHHHHH-HHHH---hCCCCC--CcCcccCCcHHHHHHHHHHHHHhCCCc--EEEEcccchhHHH
Confidence 4467889999998877777764 4333 223222 667889999999999999999999987 7778887776667
Q ss_pred HHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCchhhhc-cCC---C--EeEEEEEcC--CCCeeeccH
Q 001989 244 MAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDLKDIDY-KSG---D--VCGVLVQYP--GTEGEVLDY 315 (985)
Q Consensus 244 ~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~~~l~~-l~~---~--t~~V~v~~p--n~~G~v~di 315 (985)
++-++. +++|.|+.++.+|.|.++.++ +++..-+.+.+.|+++|++ +.+ . .+.++|+.. ++.|.+.|+
T Consensus 115 ~i~~l~---~~~dli~~D~lnHASiidG~r-ls~a~~~~f~HnD~~~Le~~l~~~~~~~~~~~~IvtegVfSMdGdiApL 190 (388)
T COG0156 115 LLSALL---KKGDLIFSDELNHASIIDGIR-LSRAEVRRFKHNDLDHLEALLEEARENGARRKLIVTEGVFSMDGDIAPL 190 (388)
T ss_pred HHHHhc---CCCcEEEEechhhhhHHHHHH-hCCCcEEEecCCCHHHHHHHHHhhhccCCCceEEEEeccccCCCCcCCH
Confidence 666552 378999999999999999997 3555556666778888887 532 1 245566654 899999999
Q ss_pred HHHHHHHHhCCcEEEEEecCccccCCCCCC-----ccc-----ceEEEecC-ccccccCCCCCCcEEEEEEchhhHhcCC
Q 001989 316 GDFIKNAHANGVKVVMATDLLALTILKPPG-----ELG-----ADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMP 384 (985)
Q Consensus 316 ~~I~~~a~~~galliV~a~~~~lg~l~~~~-----~~G-----aDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp 384 (985)
++|++++++||++++| ++.++.|++.+-| .+| +||++++. |.||. .| ||+.++..+.+.+
T Consensus 191 ~~l~~L~~ky~a~L~V-DEAHa~Gv~G~~GrG~~e~~g~~~~~vdi~~gTlsKAlGs---~G----g~v~g~~~~~d~L- 261 (388)
T COG0156 191 PELVELAEKYGALLYV-DEAHAVGVLGPNGRGLAEHFGLEPEEVDIIVGTLGKALGS---SG----GYIAGSAALIDYL- 261 (388)
T ss_pred HHHHHHHHHhCcEEEE-EccccccccCCCCccHHHHhCCCCccceEEEEEchhhhcc---cC----ceeeCcHHHHHHH-
Confidence 9999999999999999 4678999887543 233 38999997 99973 44 5888888777655
Q ss_pred CceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcC
Q 001989 385 GRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKL 464 (985)
Q Consensus 385 ~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~ 464 (985)
|.++.+.|+|++..++.+++...++--.+-..+..++..+++.+++..++..
T Consensus 262 ----------------------------~~~ar~~ifStalpP~~aaa~~~al~~l~~~~~~r~~L~~~~~~~~~~~~~~ 313 (388)
T COG0156 262 ----------------------------RNRARPFIFSTALPPAVAAAALAALRILEEGPERRERLQELAAFFRSLLKAL 313 (388)
T ss_pred ----------------------------HHhCCceeccCCCCHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhc
Confidence 2235566667666666655553222212233567788899999999777776
Q ss_pred CCeEEcC-CCCcceEEEecCC-HHHHHHHHHHcCceeeeec-------CCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 465 GTVEVQG-LPFFDTVKVKCAD-AHAIASAAYKIEMNLRVVD-------SNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 465 g~~~~~~-~~~~~~~~~~~~~-~~~v~~~L~~~GI~~~~~~-------~~~lris~t~~~t~edId~li~aL~~ 529 (985)
| +.+.. ...+-++.+..+. +.++...|.++||++..+. ...+|+|+|..+|++|||+++++|.+
T Consensus 314 ~-~~~~~s~s~I~pv~~gd~~~a~~~s~~l~~~Gi~v~~i~~PTVp~gtarlRi~lta~ht~~~I~~l~~~l~~ 386 (388)
T COG0156 314 G-LVLLPSESPIIPVILGDEERALEASRALLEEGIYVSAIRPPTVPKGTARLRITLTAAHTEEDIDRLAEALSE 386 (388)
T ss_pred C-CccCCCCCCeeeeEeCCHHHHHHHHHHHHHCCeeEeeecCCCCCCCcceEEEEecCCCCHHHHHHHHHHHHh
Confidence 7 66532 2333345555545 8899999999999885441 26799999999999999999999874
|
|
| >TIGR03812 tyr_de_CO2_Arch tyrosine decarboxylase MnfA | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.4e-20 Score=216.55 Aligned_cols=343 Identities=15% Similarity=0.192 Sum_probs=225.0
Q ss_pred CHHHHHHHHHHHhcCCCcc---ceecCCCCCCCCCcHHHHHHHHhCCccccccCCChhhHhhhHHHHHHHHHHHHHHhcC
Q 001989 149 TESQMIEHMQKLASMNKVY---KSFIGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTG 225 (985)
Q Consensus 149 se~e~~~~~~~l~~~n~~~---~~~lG~g~y~~~~p~~v~~~i~~~~~~~t~~~pyq~e~sqg~l~~i~e~q~~ia~L~g 225 (985)
||.|++..++++-+....+ ..++..+.+| .|.+.. .+.. ++..+ ...+....|..+...++++.+|+++|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-a~~~---~~~~~-~~~~~~~~~~~~~~~~~~~~la~~~g 73 (373)
T TIGR03812 1 SEEEVLEELKEYRSEDLKYSDGRILGSMCTNP--HPIAVK-AYDM---FIETN-LGDPGLFPGTKKIEEEVVGSLGNLLH 73 (373)
T ss_pred CHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCc--hHHHHH-HHHH---HhhcC-CCCcccCccHHHHHHHHHHHHHHHhC
Confidence 6899999999985544332 2234444433 333222 2111 11111 11122234566778889999999999
Q ss_pred CCCcceeeccchHHHHHHHHHHhhh---hcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc--------hhhhc-
Q 001989 226 LPMSNASLLDEGTAAAEAMAMCNNI---QKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL--------KDIDY- 293 (985)
Q Consensus 226 ~~~~~~sl~~~~ta~~ea~~~a~~~---~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~--------~~l~~- 293 (985)
++.+++.++.|+|.+...++.+... ..++|++|++++..|+++...++ ..|++++.++. +++++
T Consensus 74 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~~vl~~~~~h~~~~~~~~----~~G~~~~~v~~~~~~~~d~~~l~~~ 149 (373)
T TIGR03812 74 LPDAYGYIVSGGTEANIQAVRAAKNLAREEKRTPNIIVPESAHFSFEKAAE----MLGLELRYAPLDEDYTVDVKDVEDL 149 (373)
T ss_pred CCCCCeEEeccHHHHHHHHHHHHHHHHhccCCCcEEEECCcchHHHHHHHH----HcCCeEEEEeeCCCCCcCHHHHHHH
Confidence 9988888888988766555443321 11366899999999999877654 45888877753 35555
Q ss_pred cCCCEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCC-------C----CCCcccceEEEecCccccc
Q 001989 294 KSGDVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTIL-------K----PPGELGADIVVGSAQRFGV 361 (985)
Q Consensus 294 l~~~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l-------~----~~~~~GaDi~v~s~k~lg~ 361 (985)
+++++.++++.+| |++|.+.|+++|+++||++|++++||. .++.+.+ . .....|+|.+..++++|+.
T Consensus 150 l~~~~~~vv~~~~~~~tG~~~~~~~i~~l~~~~~~~livD~-a~~~~~~~~~~~~~~~~~~d~~~~~~d~~~~s~~K~~~ 228 (373)
T TIGR03812 150 IDDNTIGIVGIAGTTELGQIDDIEELSKIALENGIYLHVDA-AFGGFVIPFLKKGYNPPPFDFSLPGVQSITIDPHKMGL 228 (373)
T ss_pred HhhCcEEEEEECCCCCCCccCCHHHHHHHHHHcCCeEEEEc-CchhHHHHHHhcCCCCCCccccCCCCCEEEECccccCC
Confidence 6667755554444 789999999999999999999999953 2222111 0 1123589999999855542
Q ss_pred -cCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHHHHhCc
Q 001989 362 -PMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGP 440 (985)
Q Consensus 362 -P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~ 440 (985)
|. |..|+++.++++++.+... .+ |.. . .+ + ....||.|. ....++.++ +.+++.
T Consensus 229 ~~~----~~G~~~~~~~~~~~~l~~~----------~~-~~~-~-~~-~--~~~~gt~~~---~~~~~~~~~--l~~l~~ 283 (373)
T TIGR03812 229 SPI----PAGGILFRSKSYLKYLSVD----------AP-YLT-V-KK-Q--ATITGTRSG---ASAAATYAV--IKYLGR 283 (373)
T ss_pred CcC----CceEEEEeCHHHHhhhccc----------Cc-ccC-C-CC-C--cceEeechh---HHHHHHHHH--HHHhCH
Confidence 32 3345666777777665210 00 100 0 00 0 001244443 223333333 477888
Q ss_pred chHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCCCcceEEEecCCHHHHHHHHHHcCceeeee-cCCeEEEEeccCCCHHH
Q 001989 441 EGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDTVKVKCADAHAIASAAYKIEMNLRVV-DSNTVTASFDETTTLED 519 (985)
Q Consensus 441 ~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~~~L~~~GI~~~~~-~~~~lris~t~~~t~ed 519 (985)
+|++++.+++.+++++|+++|+++| ++.+..+..+.+.+..++..++.++|.++||.++.. .+..+|+|++.++|++|
T Consensus 284 ~g~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~~~~v~~~~~~~~~v~~~L~~~gi~v~~~~~~~~iRis~~~~~t~ed 362 (373)
T TIGR03812 284 EGYRKIVAECMENTRYLVEELKKIG-FEPVIEPVLNIVAFEVDDPEEVRKKLRDRGWYVSVTRCPKALRIVVMPHVTREH 362 (373)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCC-CeEEcCCCceEEEEEeCCHHHHHHHHHHCCceeccCCCCCEEEEEEECCCCHHH
Confidence 9999999999999999999999997 654433445566677666678999999999998764 35789999999999999
Q ss_pred HHHHHHHHhC
Q 001989 520 VDKLFIVFAG 529 (985)
Q Consensus 520 Id~li~aL~~ 529 (985)
+|+++++|.+
T Consensus 363 id~l~~~L~~ 372 (373)
T TIGR03812 363 IEEFLEDLKE 372 (373)
T ss_pred HHHHHHHHhh
Confidence 9999999963
|
Members of this protein family are the archaeal form, MnfA, of tyrosine decarboxylase, and are involved in methanofuran biosynthesis. Members show clear homology to the Enterococcus form, Tdc, that is involved in tyrosine decarboxylation for resistance to acidic conditions. |
| >PLN02409 serine--glyoxylate aminotransaminase | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.1e-21 Score=223.88 Aligned_cols=319 Identities=11% Similarity=0.015 Sum_probs=218.0
Q ss_pred hhHHHHHHHHHHHHHHHhCCCc--cceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccH--HHHHHCCcE
Q 001989 628 QGYQEMFNNLGEWLCTITGFDS--FSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNP--ATAAMCGMK 703 (985)
Q Consensus 628 ~G~~~~~~e~~~~la~l~G~~~--~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~--~~a~~~G~~ 703 (985)
.+..++++++++++++++|.+. ..+++++|++++++++..+ .+++|+||+++..|.... ..++..|++
T Consensus 38 ~~~~~~~~~~~~~l~~~~g~~~~~~vi~~~~gt~a~~~a~~~~--------~~~Gd~Vlv~~~~~~~~~~~~~~~~~g~~ 109 (401)
T PLN02409 38 PAFPALTKELLEDVKYIFKTKSGTPFIFPTTGTGAWESALTNT--------LSPGDKVVSFRIGQFSLLWIDQMQRLNFD 109 (401)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHhc--------CCCCCEEEEeCCCchhHHHHHHHHHcCCc
Confidence 4567788899999999999875 3466677776664443321 147899999887665443 335678999
Q ss_pred EEEEcCCCCCCCCHHHHHHHHHhcC-CCEEEEEEEcC-CCccccccCHHHHHHH--HHHcCCEEEEEccccccccCCCCC
Q 001989 704 IVSVGTDAKGNINIEELRKAAEANR-DNLSTLMVTYP-STHGVYEEGIDEICKI--IHDNGGQVYMDGANMNAQVGLTSP 779 (985)
Q Consensus 704 vv~v~~d~~g~iD~e~L~~~i~~~~-~~t~~Vvv~~p-n~~G~i~~di~eI~~l--a~~~galliVD~a~~~~~~~l~~p 779 (985)
++.++.++++.+|+++|+++++... +++++|+++++ |.+|++. |+++|+++ ||++|++++||++|..+... .+.
T Consensus 110 v~~v~~~~~~~~~~~~l~~~l~~~~~~~~k~v~~~~~~~~tG~~~-~~~~i~~l~~~~~~g~~~vvD~v~s~g~~~-id~ 187 (401)
T PLN02409 110 VDVVESPWGQGADLDILKSKLRQDTNHKIKAVCVVHNETSTGVTN-DLAGVRKLLDCAQHPALLLVDGVSSIGALD-FRM 187 (401)
T ss_pred eEEEECCCCCCCCHHHHHHHHhhCcCCCccEEEEEeecccccccC-CHHHHHHHHhhhccCcEEEEEcccccCCcc-ccc
Confidence 9999988766789999999998311 27899999987 5799998 89999999 99999999999998644322 234
Q ss_pred CccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCC-----CccccCC--CCCCCC-CCCCCCCCCCcchhhhH
Q 001989 780 GYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPS-----HPVVSTG--GIPAPE-KSQPLGTIAAAPWGSAL 851 (985)
Q Consensus 780 g~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~-----~~~g~~~--~~~~~~-~~~~~~~i~s~~~g~~~ 851 (985)
.++++|++++++||||+. +||+|++++++++.+.+.. ..+++.. +....+ ....|+++ .
T Consensus 188 ~~~~~D~~~~s~~K~l~~-----P~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~Tp~~--------~ 254 (401)
T PLN02409 188 DEWGVDVALTGSQKALSL-----PTGLGIVCASPKALEASKTAKSPRVFFDWADYLKFYKLGTYWPYTPSI--------Q 254 (401)
T ss_pred cccCccEEEEcCccccCc-----CCCcceeEECHHHHHHHhcCCCCCeecCHHHHHHHHhcCCCCCCCccH--------H
Confidence 678999999999999963 3589999999776544321 1111100 000000 00011111 1
Q ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHH-H
Q 001989 852 ILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLM-D 929 (985)
Q Consensus 852 ~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~-~ 929 (985)
...+..+.+..+..+|+.++.++..++++++++.|++ ++++..+.+.......+.+.++ .+.+..++.+.|. +
T Consensus 255 ~~~al~~al~~~~~~G~e~i~~~~~~l~~~l~~~L~~~g~~~~~~~~~~~s~~v~~~~~p-----~~~~~~~l~~~l~~~ 329 (401)
T PLN02409 255 LLYGLRAALDLIFEEGLENVIARHARLGEATRLAVEAWGLKLCTKKPEWRSDTVTAVVVP-----EGIDSAEIVKNAWKK 329 (401)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCeeccCChhhcccceEEEeCC-----CCCCHHHHHHHHHHh
Confidence 1222234455555678888888899999999999986 5555432111111112234443 2577888988875 5
Q ss_pred CCCccCCCCCC-CCCEEEEeccCCCCHHHHHHHHccCChhHHHHhhcc
Q 001989 930 YGFHGPTMSWP-VPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRLKM 976 (985)
Q Consensus 930 ~Gi~~~~~~~p-~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~~~ 976 (985)
+||.+..-..+ -...+||+...+++.+||.+ ++.+|++++..+..
T Consensus 330 ~~i~i~~G~~~~~~~~~Rig~~g~~~~~~~~~--~~~~~~~~l~~~g~ 375 (401)
T PLN02409 330 YNLSLGLGLNKVAGKVFRIGHLGNVNELQLLG--ALAGVEMVLKDVGY 375 (401)
T ss_pred CCEEEEcCCCcccCCEEEEcCCCCCCHHHHHH--HHHHHHHHHHHcCC
Confidence 69887543333 25789999999999999999 78999998887653
|
|
| >COG0112 GlyA Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.89 E-value=6.7e-22 Score=214.28 Aligned_cols=294 Identities=20% Similarity=0.238 Sum_probs=212.3
Q ss_pred HHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHH---HHHCC--cEEEEEc
Q 001989 634 FNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPAT---AAMCG--MKIVSVG 708 (985)
Q Consensus 634 ~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~---a~~~G--~~vv~v~ 708 (985)
...+.+...++||++.++++|.||++|+.++++|+. +++|+|+-.+..||.|... ....| ++++.++
T Consensus 74 E~laierak~LFga~~anVQPhSGs~AN~av~~All--------~pGDtimgm~l~~GGHltHg~~v~~sG~~~~~v~Y~ 145 (413)
T COG0112 74 EELAIERAKKLFGAEYANVQPHSGSQANQAVYLALL--------QPGDTIMGLDLSHGGHLTHGSPVNFSGKLFNVVSYG 145 (413)
T ss_pred HHHHHHHHHHHhCCCccccCCCCchHHHHHHHHHHc--------CCCCeEecccCCCCCcccCCCCCCccceeEEeEecc
Confidence 334556788899999999999999999988888764 4899999888888865332 22333 5787888
Q ss_pred CCC-CCCCCHHHHHHHHHhcCCCEEEEEEEcCCCccccccCHHHHHHHHHHcCCEEEEEccccccc---cCCCCCCccCC
Q 001989 709 TDA-KGNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQ---VGLTSPGYIGA 784 (985)
Q Consensus 709 ~d~-~g~iD~e~L~~~i~~~~~~t~~Vvv~~pn~~G~i~~di~eI~~la~~~galliVD~a~~~~~---~~l~~pg~~g~ 784 (985)
+|+ ++.+|.|++++.+.+++| ++|+.....+.-.+ |++++.++|++.|++|++|.||..++ +.+.+|-.+ +
T Consensus 146 vd~et~~IDyD~~~k~a~e~kP--K~ii~G~SaY~r~i--d~~~~reIad~VGA~L~~DmAHiaGLVA~G~~p~P~~~-A 220 (413)
T COG0112 146 VDPETGLIDYDEVEKLAKEVKP--KLIIAGGSAYSRPI--DFKRFREIADEVGAYLMVDMAHVAGLIAGGVHPNPLPH-A 220 (413)
T ss_pred cccccCccCHHHHHHHHHHhCC--CEEEECcccccccc--CHHHHHHHHHHhCceEEehHHHHHHHHhcccCCCCCCc-c
Confidence 885 499999999999987554 45666554455555 79999999999999999999996444 334566666 9
Q ss_pred cEEEeCCcccccccCCCCCCceEEEEEcc-cccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHh
Q 001989 785 DVCHLNLHKTFCIPHGGGGPGMGPIGVKK-HLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMM 863 (985)
Q Consensus 785 Di~~~s~hK~l~~p~g~GGPg~G~i~~~~-~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~l 863 (985)
|+++.+.|||| .||++|+|.+++ ++...+...+|.+. -+++. ....++.|.++-+.+
T Consensus 221 dvVTtTTHKTl------rGPrGG~Il~~~eel~kkin~aVFPg~---------------qggpl-~HviAakaVa~~Eal 278 (413)
T COG0112 221 DVVTTTTHKTL------RGPRGGIILTNDEELAKKINSAVFPGL---------------QGGPL-MHVIAAKAVAFKEAL 278 (413)
T ss_pred ceEeCCcccCC------CCCCceEEEeccHHHHHHhhhhcCCcc---------------CCChH-HHHHHHHHHHHHHHc
Confidence 99999999998 689999999995 77766654333211 01111 112233444444444
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCC--CCC-
Q 001989 864 GSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPT--MSW- 939 (985)
Q Consensus 864 g~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~--~~~- 939 (985)
..+++++++++.+|++.|++.|.+ |++++.. +...|.++++++. .+.+..+..+.|.+.||.++. +.|
T Consensus 279 -~p~fk~Ya~qVv~NAkaLAe~l~~~G~~vvsG---gTdnHl~lVDl~~----~~~~Gk~ae~~L~~~~It~NKN~iP~D 350 (413)
T COG0112 279 -EPEFKEYAKQVVKNAKALAEALKERGFKVVSG---GTDNHLVLVDLRS----KGLTGKKAEAALERAGITVNKNAIPFD 350 (413)
T ss_pred -ChhHHHHHHHHHHHHHHHHHHHHHcCCeEecC---CccceEEEEEccc----CCCCHHHHHHHHHHcCEeeccCCCCCC
Confidence 457899999999999999999986 8888653 4567889999872 367889999999999998864 211
Q ss_pred ---C-CCCEEEEeccCC----CCHHHHHHHHccCChhHHHH
Q 001989 940 ---P-VPGTLMIEPTES----ESKSWTGIVMLSSPSEKKLH 972 (985)
Q Consensus 940 ---p-~~~~lris~t~~----~t~eeId~~~~~~~l~~~~~ 972 (985)
| ++..|||-..+. ..++|+.+ ..+.+.+++.
T Consensus 351 ~~~p~~tSGIRiGtpa~TtrG~~e~e~~~--Ia~~I~~vl~ 389 (413)
T COG0112 351 PESPFVTSGIRIGTPAVTTRGFGEAEMEE--IADLIADVLD 389 (413)
T ss_pred CCCCCCCccceeccHHHhhcCCCHHHHHH--HHHHHHHHHh
Confidence 2 457899987654 34566666 4444444443
|
|
| >PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal) | Back alignment and domain information |
|---|
Probab=99.89 E-value=2e-21 Score=221.59 Aligned_cols=317 Identities=18% Similarity=0.229 Sum_probs=204.0
Q ss_pred CCccccCCCCHHHHHHHHHHHhccccCcccccccccccccCCCcc---ccccccccccccccCCCCchhhhhhHHHHHHH
Q 001989 560 THPVFNKYHTEHELLRYIHLLQSKELSLCHSMIPLGSCTMKLNAT---TEMMPVTWPSFANIHPFAPADQAQGYQEMFNN 636 (985)
Q Consensus 560 ~~p~~~~~~se~e~~~~l~~l~~~~~~~~~~~~~lG~~t~~~~~~---~~~~~~~~~~f~~~~p~~p~e~~~G~~~~~~e 636 (985)
.+| +.+.+.+++++.+++.........+...++|.-+...+.. .++.. ...|-+.+.. +.++...++..+
T Consensus 11 ~lp--~~~~~~~~vl~~~~~~l~~~~~~~~~P~~~~~~~~~~~~~~i~~~~l~----~~~n~n~~~~-~~~P~~~~~E~~ 83 (373)
T PF00282_consen 11 ELP--EEGESLEEVLKDLREILAPGVTHWHHPRFFGFVPGGPSPASILADLLA----SALNQNGFTW-EASPAATEIERE 83 (373)
T ss_dssp CHH--SSHH-HHHHHHHHHHHTHGCS-TTTSTTBESSSHT--CHHHHHHHHHH----HHHT-BTTST-TTSHHHHHHHHH
T ss_pred ccc--cCCCCHHHHHHHHHHHhhccCCCCCChhHhhhccCCccHHHHHHHHHH----hhhccccccc-ccccccccchHH
Confidence 556 5778899999999887666544444456676422121111 11111 2222222222 556788899999
Q ss_pred HHHHHHHHhCCCc--------cceecCcHHHHHHHHHHHHHHHHH----hcCC--CCCCEEEEcCCCCcccHHHHHHCCc
Q 001989 637 LGEWLCTITGFDS--------FSLQPNAGAAGEYAGLMVIRAYHK----ARGD--HHRNVCIIPVSAHGTNPATAAMCGM 702 (985)
Q Consensus 637 ~~~~la~l~G~~~--------~~~~~~sGa~a~~a~l~air~~~~----~~g~--~~~~~IIv~~~~Hg~~~~~a~~~G~ 702 (985)
+.+|+++++|++. ..++.++|+++++.+++++|.... ..|. .++..|++++.+|.+..+++.+.|+
T Consensus 84 vi~~l~~l~g~~~~~~~~~~~~G~~t~Ggt~anl~al~aAR~~~~~~~~~~~~~~~~~~~i~~s~~aH~S~~Kaa~~lGl 163 (373)
T PF00282_consen 84 VIRWLADLFGLPESFTFSKDAGGVFTSGGTEANLYALLAARERALPRSKAKGVEEIPKPVIYVSEQAHYSIEKAARILGL 163 (373)
T ss_dssp HHHHHHHHTTGSGGTTSTTTSEEEEESSHHHHHHHHHHHHHHHHHHHHHHHTTTHCSSEEEEEETTS-THHHHHHHHTTS
T ss_pred HHHHHHHHhCCcccccccCCCceeEeccchHHHHHHHHHHHHHHhhhhhhcccccccccccccccccccHHHHhcceeee
Confidence 9999999999982 245667888899888888886532 1221 1234677899899999999999999
Q ss_pred EEEEEcCCCCCCCCHHHHHHHHHhc--CCCEE-EEEEEcCC-CccccccCHHHHHHHHHHcCCEEEEEcccccccc--CC
Q 001989 703 KIVSVGTDAKGNINIEELRKAAEAN--RDNLS-TLMVTYPS-THGVYEEGIDEICKIIHDNGGQVYMDGANMNAQV--GL 776 (985)
Q Consensus 703 ~vv~v~~d~~g~iD~e~L~~~i~~~--~~~t~-~Vvv~~pn-~~G~i~~di~eI~~la~~~galliVD~a~~~~~~--~l 776 (985)
.++.||+|++|++|+++|+++|++. +..+. +|+.+.++ .+|.++ |+++|+++|+++++|+|||+|..-+.. ..
T Consensus 164 g~~~I~~~~~~~md~~~L~~~l~~~~~~g~~p~~vvat~Gtt~~Ga~D-~l~~i~~i~~~~~~wlHVDaA~gg~~~~~~~ 242 (373)
T PF00282_consen 164 GVRKIPTDEDGRMDIEALEKALEKDIANGKTPFAVVATAGTTNTGAID-PLEEIADICEKYNIWLHVDAAYGGSALLSPE 242 (373)
T ss_dssp EEEEE-BBTTSSB-HHHHHHHHHHHHHTTEEEEEEEEEBS-TTTSBB--SHHHHHHHHHHCT-EEEEEETTGGGGGGHCT
T ss_pred EEEEecCCcchhhhHHHhhhhhcccccccccceeeeccCCCccccccc-CHHHHhhhccccceeeeeccccccccccccc
Confidence 9999999999999999999998742 22344 66677776 599999 999999999999999999998631110 11
Q ss_pred CC---CCccCCcEEEeCCcccccccCCCCCCceEEEEEcccc--cCcC---CCCccccCCCCCCCCCCCCCCCCCCcchh
Q 001989 777 TS---PGYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHL--APFL---PSHPVVSTGGIPAPEKSQPLGTIAAAPWG 848 (985)
Q Consensus 777 ~~---pg~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l--~~~l---p~~~~g~~~~~~~~~~~~~~~~i~s~~~g 848 (985)
.+ .+-..+|.++.++|||+..|++ .|++.++++. ...+ +.++.....+.. ........++..+.
T Consensus 243 ~~~~~~gi~~adSit~d~HK~l~~P~~-----~~~~l~r~~~~l~~~~~~~~~Yl~~~~~~~~-~~~~~~~~tl~~SR-- 314 (373)
T PF00282_consen 243 YRHLLFGIERADSITIDPHKWLGVPYG-----CGVLLVRDKSDLRDAFSINADYLGNDDRESD-ESYDYGDYTLQGSR-- 314 (373)
T ss_dssp TGGGGTTGGGESEEEEETTTTTS-SSS------EEEEESSGGGHHGGGEEEETCTT-S-SSS--GGGCEEEGSSSSSG--
T ss_pred ccccccccccccccccchhhhhcCCcc-----ceeEEeecccchHHHhccChhhhcccccccc-cccccccccccccc--
Confidence 11 1234589999999999988765 4578888532 1111 111110000000 00000111222222
Q ss_pred hhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc--cCCee
Q 001989 849 SALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK--HYPIL 893 (985)
Q Consensus 849 ~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~--g~~l~ 893 (985)
...++..|+.|+.+|.+|++++.++.++++++++++|++ .++++
T Consensus 315 -~~~alk~w~~l~~~G~~G~~~~i~~~~~~a~~l~~~l~~~~~~el~ 360 (373)
T PF00282_consen 315 -RFRALKLWATLKSLGREGYRERIRRCIELARYLADRLRKDPRFELV 360 (373)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTEEES
T ss_pred -cchHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 344577899999999999999999999999999999987 34443
|
Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A .... |
| >TIGR01814 kynureninase kynureninase | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.7e-21 Score=223.85 Aligned_cols=303 Identities=14% Similarity=0.150 Sum_probs=193.0
Q ss_pred HHHHHHHHHHHHhCCCccce-ecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHH----HHHCCcEE---
Q 001989 633 MFNNLGEWLCTITGFDSFSL-QPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPAT----AAMCGMKI--- 704 (985)
Q Consensus 633 ~~~e~~~~la~l~G~~~~~~-~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~----a~~~G~~v--- 704 (985)
..+++++ + +++|.++..+ +..+++++.. .+++.+. .++ .++++|++++..|++.... ++..|+++
T Consensus 72 ~~~~~~~-~-~l~g~~~~~v~~~~~~t~~l~---~~~~~~~-~~~-~~~~~i~~~~~~~~s~~~~~~~~~~~~g~~~~~~ 144 (406)
T TIGR01814 72 LDESLLK-L-RLVGAKEDEVVVMNTLTINLH---LLLASFY-KPT-PKRYKILLEAKAFPSDHYAIESQLQLHGLTVEES 144 (406)
T ss_pred hhhhhcc-c-cccCCCCCcEEEeCCchHHHH---HHHHHhc-CCc-CCccEEEecCCCCChHHHHHHHHHHhcCCCcccc
Confidence 3334444 4 7999876544 3444555443 2333321 111 1234688888888875432 35678887
Q ss_pred -EEEcCCCCCCCCHHHHHHHHHhcCCCEEEEEEEcCC-CccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCcc
Q 001989 705 -VSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPS-THGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYI 782 (985)
Q Consensus 705 -v~v~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~pn-~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~ 782 (985)
+.++.+++|.+|++++++.+++..++|++|++++++ .+|.+. |+++|+++||++|++++||++|..+...+ +..++
T Consensus 145 ~~~~~~~~~g~~~~~~l~~~~~~~~~~t~lv~~~~v~~~tG~~~-~~~~i~~~~~~~g~~~~vD~aq~~G~~~i-d~~~~ 222 (406)
T TIGR01814 145 MVQIEPREEETLRLEDILDTIEKNGDDIAVILLSGVQYYTGQLF-DMAAITRAAHAKGALVGFDLAHAVGNVPL-DLHDW 222 (406)
T ss_pred eEEeccCCCCccCHHHHHHHHHhcCCCeEEEEEeccccccceec-CHHHHHHHHHHcCCEEEEEcccccCCccc-ccccC
Confidence 567766678899999999886444789999999985 589998 89999999999999999999997665543 45678
Q ss_pred CCcEEEeCCcccccccCCCCCCceEEEEEccc-ccCcCCCCccccCCCC------------C-CCCCCCCCCCCCCcchh
Q 001989 783 GADVCHLNLHKTFCIPHGGGGPGMGPIGVKKH-LAPFLPSHPVVSTGGI------------P-APEKSQPLGTIAAAPWG 848 (985)
Q Consensus 783 g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~-l~~~lp~~~~g~~~~~------------~-~~~~~~~~~~i~s~~~g 848 (985)
|+|++++++||||+ |||| |+++++++ .....| ...|+.... . ..+.+.+|.++.
T Consensus 223 gvD~~~~s~hK~l~-----g~pG-~~l~v~~~~~~~~~p-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~GT~~~~----- 290 (406)
T TIGR01814 223 GVDFACWCTYKYLN-----AGPG-AGAFVHEKHAHTERP-RLAGWWGHARPTRFKMDNTLGLIPCGFRISNPPIL----- 290 (406)
T ss_pred CCCEEEEcCccccC-----CCCC-eEEEEehhhhhhcCC-CCCcccCCCCccccccccccCCCccceeeCCccHH-----
Confidence 99999999999984 5677 55655433 222222 222221100 0 001112222221
Q ss_pred hhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhccC----CeeecCCCCc--eeeEEEEEecCccccCCCCHHH
Q 001989 849 SALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHY----PILFRGVNGT--VAHEFIVDLRGLKNTAGIEPED 922 (985)
Q Consensus 849 ~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~g~----~l~~~~~~~~--~~~~~iv~~~~~~~~~g~~~~~ 922 (985)
.+....+++..+...|+.++.++...+++++++.|++.. .+...++..+ ....+.+.++ .+.++
T Consensus 291 ---~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~~~~~~~~~i~~~~~~~~r~~~v~~~~~-------~~~~~ 360 (406)
T TIGR01814 291 ---SVAALRGSLDIFDQAGMEALRKKSLLLTDYLEELIKARCGGPPVLTIITPRDHAQRGCQLSLTHP-------VPGKA 360 (406)
T ss_pred ---HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCCceEEeCCCChhhcCCeEEEEec-------CCHHH
Confidence 122223445555556677777888999999999887621 1221122111 1122344432 35789
Q ss_pred HHHHHHHCCCccCCCCCCCCCEEEEec-cCCCCHHHHHHHHccCChhHHH
Q 001989 923 VAKRLMDYGFHGPTMSWPVPGTLMIEP-TESESKSWTGIVMLSSPSEKKL 971 (985)
Q Consensus 923 v~~~L~~~Gi~~~~~~~p~~~~lris~-t~~~t~eeId~~~~~~~l~~~~ 971 (985)
+.++|.++||.+... .++.+|||+ +.++|++|||+ +++.|++++
T Consensus 361 ~~~~L~~~gi~v~~~---~~~~iRiS~~~~~nt~~did~--l~~~l~~~~ 405 (406)
T TIGR01814 361 VFQALIKRGVIGDKR---EPSVIRVAPVPLYNTFVDVYD--AVNVLEEIL 405 (406)
T ss_pred HHHHHHHCCEEEecc---CCCeEEEechhccCCHHHHHH--HHHHHHHHh
Confidence 999999999986421 137899999 68999999999 777777653
|
This model describes kynureninase, a pyridoxal-phosphate enzyme. Kynurinine is a Trp breakdown product and a precursor for NAD. In Chlamydia psittaci, an obligate intracellular pathogen, kynureninase makes anthranilate, a Trp precursor, from kynurenine. This counters the tryptophan hydrolysis that occurs in the host cell in response to the pathogen. |
| >PLN02409 serine--glyoxylate aminotransaminase | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.9e-21 Score=221.47 Aligned_cols=323 Identities=14% Similarity=0.100 Sum_probs=226.2
Q ss_pred ecCCCCCCCCCcHHHHHHHHhCCccccccCCChhhHhhhHHHHHHHHHHHHHHhcCCCCc-ceeeccchHHHHHHHHHHh
Q 001989 170 FIGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMS-NASLLDEGTAAAEAMAMCN 248 (985)
Q Consensus 170 ~lG~g~y~~~~p~~v~~~i~~~~~~~t~~~pyq~e~sqg~l~~i~e~q~~ia~L~g~~~~-~~sl~~~~ta~~ea~~~a~ 248 (985)
+.+.| |..+|+.+.+++ .++. ..+ .+.+..+.+.+.++.+++++|.+.. .+.+..++|+++++++...
T Consensus 12 l~~pG--P~~~~~~V~~a~-~~~~--~~~------~~~~~~~~~~~~~~~l~~~~g~~~~~~vi~~~~gt~a~~~a~~~~ 80 (401)
T PLN02409 12 LFVPG--PVNIPERVLRAM-NRPN--EDH------RSPAFPALTKELLEDVKYIFKTKSGTPFIFPTTGTGAWESALTNT 80 (401)
T ss_pred eccCC--CCCCCHHHHHHh-cCCC--CCC------CCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHhc
Confidence 44566 566888886443 3322 222 1344567788899999999999764 4566678887777666543
Q ss_pred hhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc--------hhhhc-cCC----CEeEEEEEcC-CCCeeecc
Q 001989 249 NIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL--------KDIDY-KSG----DVCGVLVQYP-GTEGEVLD 314 (985)
Q Consensus 249 ~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~--------~~l~~-l~~----~t~~V~v~~p-n~~G~v~d 314 (985)
+ ++||+|++++..|++.. |...++..|++++.++. +++++ +++ ++++|+++++ |.+|.+.|
T Consensus 81 -~--~~Gd~Vlv~~~~~~~~~--~~~~~~~~g~~v~~v~~~~~~~~~~~~l~~~l~~~~~~~~k~v~~~~~~~~tG~~~~ 155 (401)
T PLN02409 81 -L--SPGDKVVSFRIGQFSLL--WIDQMQRLNFDVDVVESPWGQGADLDILKSKLRQDTNHKIKAVCVVHNETSTGVTND 155 (401)
T ss_pred -C--CCCCEEEEeCCCchhHH--HHHHHHHcCCceEEEECCCCCCCCHHHHHHHHhhCcCCCccEEEEEeecccccccCC
Confidence 2 38999999998887754 33445567888887753 34555 554 7899998876 78999999
Q ss_pred HHHHHHH--HHhCCcEEEEEecCccccCCC-CCCcccceEEEecC-ccccccCCCCCCcEEEEEEchhhHhcCCCceeee
Q 001989 315 YGDFIKN--AHANGVKVVMATDLLALTILK-PPGELGADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGV 390 (985)
Q Consensus 315 i~~I~~~--a~~~galliV~a~~~~lg~l~-~~~~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~ 390 (985)
+++|+++ ||++|++++||+ ..++|.+. +..+||+|+++.++ |+|++| ||+||+++++++++++.....
T Consensus 156 ~~~i~~l~~~~~~g~~~vvD~-v~s~g~~~id~~~~~~D~~~~s~~K~l~~P-----~G~G~l~~~~~~~~~~~~~~~-- 227 (401)
T PLN02409 156 LAGVRKLLDCAQHPALLLVDG-VSSIGALDFRMDEWGVDVALTGSQKALSLP-----TGLGIVCASPKALEASKTAKS-- 227 (401)
T ss_pred HHHHHHHHhhhccCcEEEEEc-ccccCCccccccccCccEEEEcCccccCcC-----CCcceeEECHHHHHHHhcCCC--
Confidence 9999999 999999999953 45666543 45789999999999 667554 568999999988877632100
Q ss_pred eecCCCCcceeeecccccc---cccccccCCCccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCe
Q 001989 391 SIDSSGKPALRVAMQTREQ---HIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTV 467 (985)
Q Consensus 391 t~d~~g~~~~~l~l~tre~---~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~ 467 (985)
..+.+++..... .-.+...|+|+ ..++++.+++ .++..+|++++.+++.++++++++.|+++| +
T Consensus 228 -------~~~~~~~~~~~~~~~~g~~~~~Tp~~---~~~~al~~al--~~~~~~G~e~i~~~~~~l~~~l~~~L~~~g-~ 294 (401)
T PLN02409 228 -------PRVFFDWADYLKFYKLGTYWPYTPSI---QLLYGLRAAL--DLIFEEGLENVIARHARLGEATRLAVEAWG-L 294 (401)
T ss_pred -------CCeecCHHHHHHHHhcCCCCCCCccH---HHHHHHHHHH--HHHHHhhHHHHHHHHHHHHHHHHHHHHHcC-C
Confidence 001111100000 00111235554 5677777776 565678999999999999999999999997 8
Q ss_pred EEcCC---CCcceE-EEecCC---HHHHHHHHH-HcCceeee----ecCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 468 EVQGL---PFFDTV-KVKCAD---AHAIASAAY-KIEMNLRV----VDSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 468 ~~~~~---~~~~~~-~~~~~~---~~~v~~~L~-~~GI~~~~----~~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
+++.+ .....+ .+..+. +.++.+.|. ++||.+.. ..+..+|++.+-++|.+|+.+++++|+.
T Consensus 295 ~~~~~~~~~~s~~v~~~~~p~~~~~~~l~~~l~~~~~i~i~~G~~~~~~~~~Rig~~g~~~~~~~~~~~~~~~~ 368 (401)
T PLN02409 295 KLCTKKPEWRSDTVTAVVVPEGIDSAEIVKNAWKKYNLSLGLGLNKVAGKVFRIGHLGNVNELQLLGALAGVEM 368 (401)
T ss_pred eeccCChhhcccceEEEeCCCCCCHHHHHHHHHHhCCEEEEcCCCcccCCEEEEcCCCCCCHHHHHHHHHHHHH
Confidence 98742 123333 365543 678888876 56998753 2357899999999999999999999985
|
|
| >TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase | Back alignment and domain information |
|---|
Probab=99.88 E-value=8.2e-21 Score=217.72 Aligned_cols=316 Identities=12% Similarity=0.079 Sum_probs=203.6
Q ss_pred hHHHHHHHHHHHHHHHhCCCcc---ceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEE-EEcCCCCccc-HHHHHHCCcE
Q 001989 629 GYQEMFNNLGEWLCTITGFDSF---SLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVC-IIPVSAHGTN-PATAAMCGMK 703 (985)
Q Consensus 629 G~~~~~~e~~~~la~l~G~~~~---~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~I-Iv~~~~Hg~~-~~~a~~~G~~ 703 (985)
.+.+.++++++.+++++|.+.. .++.++|++|+.+++.++. .+++++ ++....|+.. ...++..|++
T Consensus 32 ~~~~~~~~~r~~la~l~~~~~~~~~i~~t~~~t~al~~~~~~l~--------~~~~~vlv~~~~~~~~~~~~~a~~~g~~ 103 (363)
T TIGR02326 32 DYNIVVEQIRQQLLALATAEEGYTSVLLQGSGTFAVEAVIGSAV--------PKDGKLLVVINGAYGARIVQIAEYLGIP 103 (363)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCceEEEEcCCCHHHHHHHHHhcC--------CCCCeEEEEeCChhhHHHHHHHHHcCCc
Confidence 3556788999999999999752 3455677777755544331 244554 4455555443 3446788999
Q ss_pred EEEEcCCCCCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCcc
Q 001989 704 IVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYI 782 (985)
Q Consensus 704 vv~v~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~ 782 (985)
++.+++++++.+|+++++++++++ +++++|.++++ |.+|++. |+++|+++||++|++++||++|..+...+ +..++
T Consensus 104 ~~~v~~~~~~~~d~~~l~~~l~~~-~~~~~v~~~~~~~~tG~~~-~i~~I~~l~~~~g~~livD~~~~~g~~~~-~~~~~ 180 (363)
T TIGR02326 104 HHVVDTGEVEPPDVVEVEAILAAD-PAITHIALVHCETTTGILN-PIEAVAKLAHRHGKVTIVDAMSSFGGIPI-DIAEL 180 (363)
T ss_pred eEEEeCCCCCCCCHHHHHHHHhhC-CCccEEEEEeecCCccccC-cHHHHHHHHHHcCCEEEEEccccccCccc-chhhc
Confidence 999999888999999999999742 35666777775 5799998 89999999999999999999986433222 34567
Q ss_pred CCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCC-CCC---CCCCCCCCCCCcchhhhHHHHHHHH
Q 001989 783 GADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGI-PAP---EKSQPLGTIAAAPWGSALILPISYT 858 (985)
Q Consensus 783 g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~-~~~---~~~~~~~~i~s~~~g~~~~~~~a~a 858 (985)
++|++++++||||+ |+||+|+++++++....+.+...+...+. ..+ ....+......+ .....+..+
T Consensus 181 ~~D~~~~s~~K~l~-----~p~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ft~~----~~~~~al~~ 251 (363)
T TIGR02326 181 HIDYLISSANKCIQ-----GVPGFGFVIARQAELAACKGNARSLSLDLYDQWRCMEDNHGKWRFTSP----THVVHAFAQ 251 (363)
T ss_pred CccEEEecCccccc-----cCCcceEEEECHHHHHHhhcCCCceeecHHHHHHHHhccCCCCCCCCc----HHHHHHHHH
Confidence 89999999999985 45689999999765543321111100000 000 000000000011 111122223
Q ss_pred HHHHhcHH-HHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceee-EEEEEecCccccCCCCHHHHHHHHHHCCCccC
Q 001989 859 YIAMMGSK-GLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAH-EFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGP 935 (985)
Q Consensus 859 ~l~~lg~e-Gl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~-~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~ 935 (985)
.+..+..+ |+.++.++..++++++++.|++ ++++... + ....+ ...+.++. ..+.+..++.+.|.++||.+.
T Consensus 252 al~~l~~~g~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~-~-~~~~~~~~~~~~~~---~~~~~~~~v~~~L~~~gi~v~ 326 (363)
T TIGR02326 252 ALLELEKEGGVAARHQRYQQNQKTLVAGMRALGFEPLLD-D-EIQSPIITSFYSPE---DPDYRFADFYQRLKEQGFVIY 326 (363)
T ss_pred HHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHcCCeeccC-c-ccCCceEEEEECCC---CCCCCHHHHHHHHHHCCEEEE
Confidence 44444444 4777778889999999999976 5555322 1 11111 12334331 002466789999999999975
Q ss_pred CCCCCCCCEEEEeccCCCCHHHHHHHHccCChhHHH
Q 001989 936 TMSWPVPGTLMIEPTESESKSWTGIVMLSSPSEKKL 971 (985)
Q Consensus 936 ~~~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~~ 971 (985)
.-..+..+.+||++..+++.+|+++ +++.|++++
T Consensus 327 ~g~~~~~~~iRi~~~~~~~~edv~~--~l~~l~~~l 360 (363)
T TIGR02326 327 PGKVSQVDCFRIGNIGEVDAADITR--LLTAIGKAM 360 (363)
T ss_pred CCcCCCCCEEEEecCCCCCHHHHHH--HHHHHHHHh
Confidence 3221224789999888899999999 777777765
|
Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli. |
| >PRK03080 phosphoserine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=6.4e-21 Score=219.37 Aligned_cols=296 Identities=13% Similarity=0.032 Sum_probs=209.2
Q ss_pred HHHHHHHHHHHHHhcCCCC-cceeecc-chHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCe-EEEEe
Q 001989 210 LESLLNFQTMIADLTGLPM-SNASLLD-EGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDI-KVVVS 286 (985)
Q Consensus 210 l~~i~e~q~~ia~L~g~~~-~~~sl~~-~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi-~v~~v 286 (985)
.+.+.+.++.+++++|++. .++.++. ++|.+++++..++ +. ++++.|++ .++|++....+ .++..|+ +++.+
T Consensus 47 ~~~~~~~r~~l~~l~~~~~~~~v~~~~gs~T~~~~~~~~~l-~~-~~~~~vi~-~g~f~~~~~~~--~~~~~g~~~v~~~ 121 (378)
T PRK03080 47 KALLKRVIEGTRELLSLPEGYEVGIVPGSDTGAWEMALWSL-LG-ARRVDHLA-WESFGSKWATD--VVKQLKLEDPRVL 121 (378)
T ss_pred HHHHHHHHHHHHHHhCCCCCceEEEECCchHHHHHHHHHhc-CC-CCcceEEE-eCHHHHHHHHH--HHhhcCCCCceEe
Confidence 4788899999999999854 4687775 8999999888765 32 12444444 68998865442 1234677 77776
Q ss_pred Cch-----hhhccCCCEeEEEEEc-CCCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCC-CCCcccceEEEecC-cc
Q 001989 287 DLK-----DIDYKSGDVCGVLVQY-PGTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILK-PPGELGADIVVGSA-QR 358 (985)
Q Consensus 287 ~~~-----~l~~l~~~t~~V~v~~-pn~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~-~~~~~GaDi~v~s~-k~ 358 (985)
+.+ ++++++. ++.|.+++ .|.+|.+.|+++|++ |++|++++||+ ..++|..+ +..+ +|++++++ |+
T Consensus 122 ~~~~g~~~d~~~i~~-~~~V~~~h~~t~tG~~~pi~~I~~--~~~g~~~vVDa-~qs~G~~pidv~~--iD~~~~s~~K~ 195 (378)
T PRK03080 122 EADYGSLPDLSAVDF-DRDVVFTWNGTTTGVRVPVARWIG--ADREGLTICDA-TSAAFALPLDWSK--LDVYTFSWQKV 195 (378)
T ss_pred ccCCCCCCCHhhcCC-CCCEEEEecCCccceeccchhhcc--ccCCCeEEEec-ccccccCCCCHHH--CcEEEEehhhh
Confidence 542 2222333 55677776 588999999999999 89999999954 45666553 2233 79999999 55
Q ss_pred ccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeeccc--ccccccccccCCCccchhHHHHHHHHHHHH
Q 001989 359 FGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQT--REQHIRRDKATSNICTAQALLANMAAMYAV 436 (985)
Q Consensus 359 lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~t--re~~irre~atsni~t~~~l~a~~aa~~l~ 436 (985)
|++| ||+|++++++++++++.+...||.. + +.+++.. .....+++.+|.|.....+++++.+++ .
T Consensus 196 l~~P-----~G~g~l~v~~~~~~~~~p~~~~~~~-----~-~~~~~~~~~~~~~~~~~~~t~~tp~i~~i~~l~~al--~ 262 (378)
T PRK03080 196 LGGE-----GGHGMAILSPRAVERLESYTPARPI-----P-KFFRLTKGGKAIENSFKGQTINTPSMLTVEDYLDQL--D 262 (378)
T ss_pred CCCC-----CceEEEEECHHHHHhhhcccCCCCC-----c-hhheeccchHHhhhhhcCCcccCchHHHHHHHHHHH--H
Confidence 5443 6799999999999888776666521 1 1222211 011123456777776667777777776 6
Q ss_pred HhCcc-hHHHHHHHHHHHHHHHHHHHhcCCCeEEcCC-C--Cc-ceEEEecCC-----HHHHHHHHHHcCceeee--e--
Q 001989 437 YHGPE-GLKTIAQRVHGLAGTFALGLKKLGTVEVQGL-P--FF-DTVKVKCAD-----AHAIASAAYKIEMNLRV--V-- 502 (985)
Q Consensus 437 ~~g~~-Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~-~--~~-~~~~~~~~~-----~~~v~~~L~~~GI~~~~--~-- 502 (985)
++..+ |++++.+|+.+++++++++|+++|+++++.. + .. ..++|+.++ ..++...|.++||.++. .
T Consensus 263 ~l~~~gG~e~i~~r~~~l~~~l~~~l~~~~~~~~~~~~~~~~s~~i~~~~~~~~~~~~~~~~~~~l~~~~i~v~~g~~~~ 342 (378)
T PRK03080 263 WANSIGGLDALIARTAANASVLYDWAEKTPWATPLVADPATRSNTSVTLDFVDAQAAVDAAAVAKLLRENGAVDIEPYRD 342 (378)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHHHHhCCCcccccCCccccCccEEEEEcCCchHHHHHHHHHHHHHcCCeeccccccC
Confidence 66666 8999999999999999999999975777631 2 22 246666553 34567777777887643 1
Q ss_pred cCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 503 DSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 503 ~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
..+.+|+|++.+||++|||+|+++|++
T Consensus 343 ~~~~vRis~~~~~t~~di~~l~~al~~ 369 (378)
T PRK03080 343 APNGLRIWCGPTVEPADVEALTPWLDW 369 (378)
T ss_pred CCCcEEEecCCCCCHHHHHHHHHHHHH
Confidence 247899999999999999999999974
|
|
| >PRK14012 cysteine desulfurase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=2e-20 Score=217.69 Aligned_cols=310 Identities=13% Similarity=0.147 Sum_probs=200.7
Q ss_pred HHHHHHHHHHHHHHhCCCccc-eecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHH---HHCCcEEEE
Q 001989 631 QEMFNNLGEWLCTITGFDSFS-LQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATA---AMCGMKIVS 706 (985)
Q Consensus 631 ~~~~~e~~~~la~l~G~~~~~-~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a---~~~G~~vv~ 706 (985)
.+.++++++.+++++|.+... ++.++|++|+..++.++..+. ..++++||+++..|+++...+ +..|++++.
T Consensus 48 ~~~~~~~r~~ia~~~g~~~~~v~~~~g~t~al~~~l~~l~~~~----~~~gd~Vi~~~~~~~s~~~~~~~~~~~g~~~~~ 123 (404)
T PRK14012 48 EEAVDIARNQIADLIGADPREIVFTSGATESDNLAIKGAAHFY----QKKGKHIITSKTEHKAVLDTCRQLEREGFEVTY 123 (404)
T ss_pred HHHHHHHHHHHHHHcCcCcCeEEEeCCHHHHHHHHHHHHHHhh----cCCCCEEEEecCccHHHHHHHHHHHhCCCEEEE
Confidence 356788999999999997643 455677777655554443211 136789999988887765443 346999999
Q ss_pred EcCCCCCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCccCCc
Q 001989 707 VGTDAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIGAD 785 (985)
Q Consensus 707 v~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~g~D 785 (985)
++++++|.+|+++|+++|+ +++++|+++++ |++|.+. |+++|.++||++|+++++|++|..+...+ +...+++|
T Consensus 124 v~~~~~g~~d~~~l~~~i~---~~t~lv~~~~~~n~tG~~~-~~~~I~~la~~~g~~vivD~a~~~g~~~~-~~~~~~~D 198 (404)
T PRK14012 124 LDPQSNGIIDLEKLEAAMR---DDTILVSIMHVNNEIGVIQ-DIAAIGEICRERGIIFHVDAAQSVGKVPI-DLSKLKVD 198 (404)
T ss_pred EccCCCCcCCHHHHHHhcC---CCCEEEEEECcCCCccchh-hHHHHHHHHHHcCCEEEEEcchhcCCccc-CcccCCCC
Confidence 9998889999999999997 78999999987 5799998 89999999999999999999996443322 34567899
Q ss_pred EEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcH
Q 001989 786 VCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGS 865 (985)
Q Consensus 786 i~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~ 865 (985)
++++|+||.+ |++|.|+++++++....+.....|...+ ++.+.++.++. ....+.++ +..+ .
T Consensus 199 ~~~~s~~K~~------gp~g~G~l~~~~~~~~~~~~~~~g~~~~---~~~~~gt~~~~-----~~~~l~~a---l~~~-~ 260 (404)
T PRK14012 199 LMSFSAHKIY------GPKGIGALYVRRKPRVRLEAQMHGGGHE---RGMRSGTLPTH-----QIVGMGEA---ARIA-K 260 (404)
T ss_pred EEEEehhhcc------CCCceEEEEEecCCCCCCCceecCCCcc---CCccCCCcCHH-----HHHHHHHH---HHHH-H
Confidence 9999999965 2236899988865433332222222100 00111222221 11112222 2222 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCeeecCC-CCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCC-CC-----
Q 001989 866 KGLTEASKIAILNANYMAKRLEKHYPILFRGV-NGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPT-MS----- 938 (985)
Q Consensus 866 eGl~~~~~~~~~~a~~l~~~L~~g~~l~~~~~-~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~-~~----- 938 (985)
.++.+..++..++++++.+.|++...+...++ .....+.+.+.+. ..+..++.+.|.+.+|..+. +.
T Consensus 261 ~~~~~~~~~~~~l~~~l~~~L~~~~~i~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~l~~~~i~~g~~~~~~~~~ 334 (404)
T PRK14012 261 EEMATENERIRALRDRLWNGIKDIEEVYLNGDLEQRVPGNLNVSFN------YVEGESLIMALKDLAVSSGSACTSASLE 334 (404)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCccccCCCEEEEEEe------CcCHHHHHHhCCCeEEEchhhhCCCCCC
Confidence 24455666778888999998876322322111 1111122233433 12345677777543332211 00
Q ss_pred -------CC-----CCCEEEEeccCCCCHHHHHHHHccCChhHHHHhhc
Q 001989 939 -------WP-----VPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRLK 975 (985)
Q Consensus 939 -------~p-----~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~~ 975 (985)
.| ..+.+|++++.++|++|+|+ +++.|+++++.++
T Consensus 335 ~~~~~~~~~~~~~~~~~~iRls~~~~~t~~dvd~--~~~~l~~~~~~~~ 381 (404)
T PRK14012 335 PSYVLRALGLNDELAHSSIRFSLGRFTTEEEIDY--AIELVRKSIGKLR 381 (404)
T ss_pred CCHHHHHcCCChhhcCceEEEEecCCCCHHHHHH--HHHHHHHHHHHHH
Confidence 11 13789999999999999999 8899999887764
|
|
| >COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.88 E-value=2e-20 Score=208.56 Aligned_cols=317 Identities=15% Similarity=0.172 Sum_probs=224.1
Q ss_pred hhHHHHHHHHHHHHHHHhCCCc--cceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccH----HHHHHCC
Q 001989 628 QGYQEMFNNLGEWLCTITGFDS--FSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNP----ATAAMCG 701 (985)
Q Consensus 628 ~G~~~~~~e~~~~la~l~G~~~--~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~----~~a~~~G 701 (985)
+-+..++.++.+.+..+++.+. ..+..+||+.|+|+++..+- .++|+||+... |.|. ..++..|
T Consensus 34 ~~F~~~~~~~~~~L~~v~~t~~~~~~ll~gsGt~amEAav~sl~--------~pgdkVLv~~n--G~FG~R~~~ia~~~g 103 (383)
T COG0075 34 PDFVGIMKEVLEKLRKVFGTENGDVVLLSGSGTLAMEAAVASLV--------EPGDKVLVVVN--GKFGERFAEIAERYG 103 (383)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCcEEEEcCCcHHHHHHHHHhcc--------CCCCeEEEEeC--ChHHHHHHHHHHHhC
Confidence 3455678889999999999883 45667889888887765432 47889988654 4443 3478899
Q ss_pred cEEEEEcCCCCCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCC-CCC
Q 001989 702 MKIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGL-TSP 779 (985)
Q Consensus 702 ~~vv~v~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l-~~p 779 (985)
.+++.+..+++-.+|+++++++|++. ++.++|.++|. +.+|+.+ |+++|+++|+++|++++||++.+ +|+. ..+
T Consensus 104 ~~v~~~~~~wg~~v~p~~v~~~L~~~-~~~~~V~~vH~ETSTGvln-pl~~I~~~~k~~g~l~iVDaVsS--~Gg~~~~v 179 (383)
T COG0075 104 AEVVVLEVEWGEAVDPEEVEEALDKD-PDIKAVAVVHNETSTGVLN-PLKEIAKAAKEHGALLIVDAVSS--LGGEPLKV 179 (383)
T ss_pred CceEEEeCCCCCCCCHHHHHHHHhcC-CCccEEEEEeccCcccccC-cHHHHHHHHHHcCCEEEEEeccc--CCCcccch
Confidence 99999999888889999999999843 56778888886 5699999 99999999999999999999865 4443 367
Q ss_pred CccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCcc-ccCCCCCC----CCCCCCCCCCCCcchhhhHHHH
Q 001989 780 GYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPV-VSTGGIPA----PEKSQPLGTIAAAPWGSALILP 854 (985)
Q Consensus 780 g~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~-g~~~~~~~----~~~~~~~~~i~s~~~g~~~~~~ 854 (985)
.+||+|+++.+++|+|+.| ||+|++.++++.++.+..+-. +.+-|... +.....++.++ . .....
T Consensus 180 d~wgiDv~itgSQK~l~~P-----PGla~v~~S~~a~e~~~~~~~~~~ylDL~~~~~~~~~~~~~p~Tp---p--v~~i~ 249 (383)
T COG0075 180 DEWGIDVAITGSQKALGAP-----PGLAFVAVSERALEAIEERKHPSFYLDLKKWLKYMEKKGSTPYTP---P--VNLIY 249 (383)
T ss_pred hhcCccEEEecCchhccCC-----CccceeEECHHHHHHHhcCCCCceeecHHHHHHHHhhcCCCCCCC---C--HHHHH
Confidence 8999999999999999754 899999999876544322100 11111100 00101111111 1 11122
Q ss_pred HHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHH-CCC
Q 001989 855 ISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMD-YGF 932 (985)
Q Consensus 855 ~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~-~Gi 932 (985)
+-..+++.+-.||+.++.+++..+++++++.+++ |+++.. .+.........+..+ .|++..++...|.+ +|+
T Consensus 250 aL~~al~~i~~EGle~r~~RH~~~~~a~r~~~~alGl~~~~-~~~~~s~tvta~~~P-----~g~~~~~~~~~~~~~~g~ 323 (383)
T COG0075 250 ALREALDLILEEGLEARIARHRRLAEALRAGLEALGLELFA-DPERRSPTVTAIKVP-----EGVDDKKVRRALLKEYGV 323 (383)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCcccc-CcccCCCceEEEECC-----CCCCcHHHHHHHHHhCCE
Confidence 2236678888999999999999999999999997 787754 221111112334444 36665555555555 588
Q ss_pred ccCCCCCCCC-CEEEEeccCCCCHHHHHHHHccCChhHHHHhhcc
Q 001989 933 HGPTMSWPVP-GTLMIEPTESESKSWTGIVMLSSPSEKKLHRLKM 976 (985)
Q Consensus 933 ~~~~~~~p~~-~~lris~t~~~t~eeId~~~~~~~l~~~~~~~~~ 976 (985)
.+..-..|.. ..+||.-.-+.+.+++.. .+..|..++.++..
T Consensus 324 ~i~gg~~~l~gkifRIGhMG~~~~~dv~~--~l~ale~~L~~~g~ 366 (383)
T COG0075 324 EIAGGQGPLKGKIFRIGHMGNVRPEDVLA--ALAALEAALRELGV 366 (383)
T ss_pred EecccccccCccEEEEecCccCCHHHHHH--HHHHHHHHHHHcCC
Confidence 8765443433 689999988999999999 77888888887654
|
|
| >PRK02769 histidine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=2e-20 Score=213.81 Aligned_cols=282 Identities=18% Similarity=0.145 Sum_probs=201.1
Q ss_pred hhHHHHHHHHHHHHHHhcCCCCcc--eeeccchHHHHHHHH-HHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEE
Q 001989 207 QGRLESLLNFQTMIADLTGLPMSN--ASLLDEGTAAAEAMA-MCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKV 283 (985)
Q Consensus 207 qg~l~~i~e~q~~ia~L~g~~~~~--~sl~~~~ta~~ea~~-~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v 283 (985)
+++.+...+..+++|+|+|+++.. ..+++|||.+....+ .++.+ .++++|++++.+|+|+.+.++.+ |++.
T Consensus 61 ~~~~~~e~~~~~~~a~l~g~~~~~~~G~~TsGgTean~~a~~~ar~~--~~~~~ii~s~~~H~Sv~ka~~~l----g~~~ 134 (380)
T PRK02769 61 LNSFDFERDVMNFFAELFKIPFNESWGYITNGGTEGNLYGCYLAREL--FPDGTLYYSKDTHYSVSKIARLL----RIKS 134 (380)
T ss_pred CChHHHHHHHHHHHHHHhCCCCCCCCEEEecChHHHHHHHHHHHHHh--CCCcEEEeCCCceehHHHHHHHc----CCCC
Confidence 356788889999999999997544 477888885433222 22222 36789999999999999998653 3333
Q ss_pred EEe--------Cchhhhc-cCCC---EeEEEEEcC-CCCeeeccHHHHHHHHHhCC---cEEEEEecCccccCCC-----
Q 001989 284 VVS--------DLKDIDY-KSGD---VCGVLVQYP-GTEGEVLDYGDFIKNAHANG---VKVVMATDLLALTILK----- 342 (985)
Q Consensus 284 ~~v--------~~~~l~~-l~~~---t~~V~v~~p-n~~G~v~di~~I~~~a~~~g---alliV~a~~~~lg~l~----- 342 (985)
+.+ |+++|++ ++++ |.+|+++++ |.+|.++|+++|+++||++| ++++||+ .++.+.+.
T Consensus 135 ~~V~~~~~g~id~~~L~~~i~~~~~~t~lvv~t~gtt~tG~idpi~~I~~i~~~~g~~~~~lHVDa-A~gg~~~p~~~~~ 213 (380)
T PRK02769 135 RVITSLPNGEIDYDDLISKIKENKNQPPIIFANIGTTMTGAIDNIKEIQEILKKIGIDDYYIHADA-ALSGMILPFVNNP 213 (380)
T ss_pred ceeccCCCCcCcHHHHHHHHHhCCCCcEEEEEEeCCCCCcccCCHHHHHHHHHHhCCCceEEEEEe-cccceeecccCcc
Confidence 333 3356666 6655 899999987 67999999999999999998 6999954 23333331
Q ss_pred --CCCcccceEEEecCccc-cccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCC
Q 001989 343 --PPGELGADIVVGSAQRF-GVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSN 419 (985)
Q Consensus 343 --~~~~~GaDi~v~s~k~l-g~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsn 419 (985)
-....|+|.++.+++|| ++|+ |+|++++++++.+.+... .. |.- ..+. ...||.|
T Consensus 214 ~~~d~~~~vDsis~s~HK~~~~P~-----g~G~l~~r~~~~~~~~~~-~~----------yl~---~~d~---t~~GSR~ 271 (380)
T PRK02769 214 PPFSFADGIDSIAISGHKFIGSPM-----PCGIVLAKKKYVERISVD-VD----------YIG---SRDQ---TISGSRN 271 (380)
T ss_pred ccCCccCCCCEEEECCcccCCCCC-----CcEEEEEehhhhhhcccC-cc----------ccC---CCCC---CccCCCC
Confidence 11223999999999555 4464 478999999887766421 00 110 0000 1245555
Q ss_pred ccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCCCcceEEEecCCHHHHHHHHHHcCcee
Q 001989 420 ICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDTVKVKCADAHAIASAAYKIEMNL 499 (985)
Q Consensus 420 i~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~~~L~~~GI~~ 499 (985)
..+ ..++-++ +.++|.+|++++.+++.++++|+.++|++.| ++++..|..++|+|..+.. ++. +||.+
T Consensus 272 g~~---~l~lw~a--L~~lg~~G~~~~~~~~~~la~~l~~~L~~~g-~~~~~~p~~~~v~f~~~~~-~~~-----~~w~l 339 (380)
T PRK02769 272 GHT---ALLLWAA--IRSLGSKGLRQRVQHCLDMAQYAVDRLQANG-IPAWRNPNSITVVFPCPSE-RIW-----KKWHL 339 (380)
T ss_pred cHH---HHHHHHH--HHHHCHHHHHHHHHHHHHHHHHHHHHHHhCC-CEEEcCCCceEEEEcCCCH-HHH-----hCeeE
Confidence 532 2233333 4889999999999999999999999999987 9988777777888876642 221 67887
Q ss_pred eeecCCeEEEEeccCCCHHHHHHHHHHHhCC
Q 001989 500 RVVDSNTVTASFDETTTLEDVDKLFIVFAGG 530 (985)
Q Consensus 500 ~~~~~~~lris~t~~~t~edId~li~aL~~~ 530 (985)
... ++.++++++..+|+|.||.|++.|...
T Consensus 340 ~~~-~~~~hi~~~~~~~~~~~~~f~~dl~~~ 369 (380)
T PRK02769 340 ATS-GNQAHIITMPHHNKQQIDSLIDELIFD 369 (380)
T ss_pred ccc-CCEEEEEECCCCCHHHHHHHHHHHHHH
Confidence 654 468999999999999999999999864
|
|
| >PLN02271 serine hydroxymethyltransferase | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.1e-20 Score=217.36 Aligned_cols=311 Identities=15% Similarity=0.096 Sum_probs=208.1
Q ss_pred HHHHHHHHHHHHHhCCCc----cceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHH---------HH
Q 001989 632 EMFNNLGEWLCTITGFDS----FSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPAT---------AA 698 (985)
Q Consensus 632 ~~~~e~~~~la~l~G~~~----~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~---------a~ 698 (985)
++..-+.+...++||.+. +++++.||+.|+.++++++. +++|+|+..+..||.|... +.
T Consensus 194 ~iE~la~era~~lF~~~~~~~gaNVQp~SGs~AN~aV~~ALl--------~PGD~IL~ldl~~GGHlshg~~~~~g~~vs 265 (586)
T PLN02271 194 QIERLCCERALAAFGLDSEKWGVNVQPYSCTSANFAVYTGLL--------LPGDRIMGLDSPSGGHMSHGYYTPGGKKVS 265 (586)
T ss_pred HHHHHHHHHHHHHhCCcccccccceeeccHHHHHHHHHHHhc--------CCCCEEEEecCCCCCchhcccccccccccc
Confidence 444445677788999887 78999999999988877663 4889999988888877442 23
Q ss_pred HCCcEEEEEc--CC-CCCCCCHHHHHHHHHhcCCCEEEEEEEcCCCccccccCHHHHHHHHHHcCCEEEEEccccccccC
Q 001989 699 MCGMKIVSVG--TD-AKGNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVG 775 (985)
Q Consensus 699 ~~G~~vv~v~--~d-~~g~iD~e~L~~~i~~~~~~t~~Vvv~~pn~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~ 775 (985)
..|..+..+| +| ++|.+|+++|++.+.+ .++++|++.+..+. ... |+++|+++|+++|++++||++|..++..
T Consensus 266 ~sG~~~~~vpY~~d~~~g~IDyd~lek~a~~--~rPKLII~g~Sayp-r~~-D~~~i~eIAdevGA~LmvD~AH~aGLIa 341 (586)
T PLN02271 266 GASIFFESLPYKVNPQTGYIDYDKLEEKALD--FRPKILICGGSSYP-REW-DYARFRQIADKCGAVLMCDMAHISGLVA 341 (586)
T ss_pred cccceEEEEEcccccccCccCHHHHHHHhhh--cCCeEEEECchhcc-CcC-CHHHHHHHHHHcCCEEEEECcccccccc
Confidence 4565444444 65 4599999999985432 78898888665443 223 8999999999999999999999766643
Q ss_pred CC---CCCccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCC----CCCCC-CCCCCCcch
Q 001989 776 LT---SPGYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAP----EKSQP-LGTIAAAPW 847 (985)
Q Consensus 776 l~---~pg~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~----~~~~~-~~~i~s~~~ 847 (985)
.. .|.. ++|++++++|||| .||.+|+|+++++..+...+...++..+.... ...++ ++...+++.
T Consensus 342 ~g~~~sP~~-~aDvvt~TTHKtL------rGPrGG~I~~r~~~~~~~~g~~gs~s~~~~~~d~~~kI~~aVfPglqgGph 414 (586)
T PLN02271 342 AKECVNPFD-YCDIVTSTTHKSL------RGPRGGIIFYRKGPKLRKQGMLLSHGDDNSHYDFEEKINFAVFPSLQGGPH 414 (586)
T ss_pred cCcCCCCCc-CCcEEEeCCcccC------CCCCceEEEecccccccccCCccccccccccHHHHHHhhcccCCccccChh
Confidence 22 3433 5999999999999 57866888888765555444333322110000 00001 111111111
Q ss_pred hhhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHH
Q 001989 848 GSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKR 926 (985)
Q Consensus 848 g~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~ 926 (985)
... .++.| ..+.......++++++++.+|++.|++.|.+ |++++..+ ...|.++++++. .|+++..+.+.
T Consensus 415 n~~-IAalA-valkea~~~efk~Ya~QVv~NAkaLA~~L~~~G~~vv~gg---TdnHlvLvDl~~----~g~~G~~ae~~ 485 (586)
T PLN02271 415 NNH-IAALA-IALKQVATPEYKAYMQQVKKNAQALASALLRRKCRLVTGG---TDNHLLLWDLTT----LGLTGKNYEKV 485 (586)
T ss_pred HHH-HHHHH-HHHHHHhChHHHHHHHHHHHHHHHHHHHHHHCCCeEeeCC---CCcceeeecCcc----cCCCHHHHHHH
Confidence 111 22222 2334443445789999999999999999976 89987643 456788899863 36788888999
Q ss_pred HHHCCCccCCCC--C---C-CCCEEEEeccCC----CCHHHHHHHHccCChhHHHH
Q 001989 927 LMDYGFHGPTMS--W---P-VPGTLMIEPTES----ESKSWTGIVMLSSPSEKKLH 972 (985)
Q Consensus 927 L~~~Gi~~~~~~--~---p-~~~~lris~t~~----~t~eeId~~~~~~~l~~~~~ 972 (985)
|.+.||.++... + | .++.|||...+. ..++|+++ ..+.+.++++
T Consensus 486 Le~~~I~~Nkn~iP~d~~~~~psGiRiGT~alT~rG~~e~d~~~--iA~~i~~~~~ 539 (586)
T PLN02271 486 CEMCHITLNKTAIFGDNGTISPGGVRIGTPAMTSRGCLESDFET--IADFLLRAAQ 539 (586)
T ss_pred HHHcCeEeccccCCCCCCCCCCCcccccCHHHHhcCCCcHHHHH--HHHHHHHHHh
Confidence 999999886422 1 1 357899987653 44577777 4455555544
|
|
| >TIGR02539 SepCysS Sep-tRNA:Cys-tRNA synthase | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.1e-20 Score=214.81 Aligned_cols=306 Identities=13% Similarity=0.135 Sum_probs=197.6
Q ss_pred HHHHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcCCC
Q 001989 632 EMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDA 711 (985)
Q Consensus 632 ~~~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~d~ 711 (985)
....++++.+++++|.+.+.+ .++|++++.+++.++. +++++|+++...|.+....++..|++++.+|++.
T Consensus 51 ~~~~~~~e~lA~~~g~~~~~i-~~g~~~a~~~~~~~l~--------~~gd~Vl~~~~~h~s~~~~~~~~g~~~~~~~~~~ 121 (370)
T TIGR02539 51 PPIHDFLEDLAEFLGMDEARV-THGAREGKFAVMHALC--------KEGDWVVLDGLAHYTSYVAAERAGLNVKEVPHTG 121 (370)
T ss_pred hHHHHHHHHHHHHhCCCceEE-ECChHHHHHHHHHHhh--------CCCCEEEECCcccHHHHHHHHHcCCEEEEEecCC
Confidence 345677888999999987655 5777777755544432 3678999988877666666788999999999863
Q ss_pred --CCCCCHHHHHHHHHhc----CCCEEEEEEEcCC-CccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCccCC
Q 001989 712 --KGNINIEELRKAAEAN----RDNLSTLMVTYPS-THGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIGA 784 (985)
Q Consensus 712 --~g~iD~e~L~~~i~~~----~~~t~~Vvv~~pn-~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~g~ 784 (985)
++.+|+++|++++++. .+++++|++++|+ .+|.+. |+++|.++|+++|++++||++|..+..+. ....+++
T Consensus 122 ~~~~~~d~~~l~~~l~~~~~~~~~~~~lv~~~~p~~~~G~~~-~l~~i~~la~~~~~~livDea~~~g~~~~-~~~~~~~ 199 (370)
T TIGR02539 122 HPEYKVDPEGYGEVIEEVEDESGKPPVLALLTHVDGEYGNLP-DAGKVAKVCREKGVPLLLNCAYTVGRMPV-SAKEIGA 199 (370)
T ss_pred cccCCcCHHHHHHHHHHhhhccCCCcEEEEEECCCCCCcccc-CHHHHHHHHHHcCCeEEEECccccCCcCC-CHHHcCC
Confidence 4789999999999631 1367899999995 699998 89999999999999999999997542221 2235679
Q ss_pred cEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhc
Q 001989 785 DVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMG 864 (985)
Q Consensus 785 Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg 864 (985)
|+++.++||+|+. +| ++|++++++++.+.+......+.. . ......++.... .+.++++.+..+
T Consensus 200 di~v~s~sK~~~~----~g-~~G~l~~~~~~i~~l~~~~~~~~~-------~-~~~~~~~~~~~~--~~~~~~~al~~~- 263 (370)
T TIGR02539 200 DFIVGSGHKSMAA----SG-PCGVLGMSEEWEDIVLRKSRYSPV-------K-EVELLGCTSRGA--PIVTMMASFPHV- 263 (370)
T ss_pred CEEEeeCcccccC----CC-CEEEEEECHHHHhhhcccccCCcc-------c-eeeeeccccccc--HHHHHHHHHHHH-
Confidence 9999999999952 23 489999998777655422100000 0 000000000001 112223333321
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccc---cCCCCHHHHHHHHHHCCCc-cCCCCC
Q 001989 865 SKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKN---TAGIEPEDVAKRLMDYGFH-GPTMSW 939 (985)
Q Consensus 865 ~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~---~~g~~~~~v~~~L~~~Gi~-~~~~~~ 939 (985)
.+.+. ..++..+++++++++|++ ++++....+.. .+.+.++++.... ........+.++|.++||. +. +
T Consensus 264 ~~~l~-~~~~~~~~~~~l~~~L~~~g~~~~~~~~s~--t~~v~~~~~~~~~~~~~~~~~~~~~~~~L~e~GI~~ir---~ 337 (370)
T TIGR02539 264 VERVK-RWDEEVKKTRWFVAELEDIGFIQLGQKPKE--HDLVKFETPGFHEIAQKHKRRGYFLYEELKKRGIHGIR---S 337 (370)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHhCCcEEEccCCCc--CceEEEECCchhHHhhhhccccHHHHHHHHhCCCcccc---C
Confidence 12222 233445667899999987 55542111111 2223344431100 0011345799999999997 32 2
Q ss_pred CCCCEEEEeccCCCCHHHHHHHHccCChhHHHHh
Q 001989 940 PVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHR 973 (985)
Q Consensus 940 p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~ 973 (985)
+.++.+||++. ..|++|+++ +++.|++++++
T Consensus 338 ~~~~~iRis~~-~~t~e~i~~--l~~~L~~~~~~ 368 (370)
T TIGR02539 338 GQTKYFKLSVY-GLTKEQVEY--VVDSFEEIVEE 368 (370)
T ss_pred CcceEEEEEec-CCCHHHHHH--HHHHHHHHHHh
Confidence 33468999984 679999999 78888887764
|
Aminoacylation of tRNA(Cys) with Cys, and cysteine biosynthesis in the process, happens in Methanocaldococcus jannaschii and several other archaea by misacylation of tRNA(Cys) with O-phosphoserine (Sep), followed by modification of the phosphoserine to cysteine. In some species, direct tRNA-cys aminoacylation also occurs but this pathway is required for Cys biosynthesis. Members of this protein catalyze the second step in this two step pathway, using pyridoxal phosphate and a sulfur donor to synthesize Cys from Sep while attached to the tRNA. |
| >KOG1549 consensus Cysteine desulfurase NFS1 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.1e-20 Score=209.26 Aligned_cols=173 Identities=20% Similarity=0.324 Sum_probs=140.8
Q ss_pred hhHHHHHHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHH---HHCCcEE
Q 001989 628 QGYQEMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATA---AMCGMKI 704 (985)
Q Consensus 628 ~G~~~~~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a---~~~G~~v 704 (985)
......+++.++.+|+++|+++..+.+++|++ +++.++++.+....+.+.+.+||+.+.+|++...++ +-.|++|
T Consensus 81 w~~~~~~E~aR~~VAklInAd~~dIiFts~AT--Es~Nlvl~~v~~~~~~~~~k~iitl~~eH~~v~~s~~~l~~~g~~V 158 (428)
T KOG1549|consen 81 WKAEDAVEAAREQVAKLINADPSDIVFTSGAT--ESNNLVLKGVARFFGDKTKKHIITLQTEHPCVLDSCRALQEEGLEV 158 (428)
T ss_pred hhhhHHHHHHHHHHHHHhCCCCCcEEEeCCch--HHHHHHHHHhhccccccccceEEEecccCcchhHHHHHHHhcCeEE
Confidence 34445588999999999999986666655543 366777776543322211227999999999886654 4679999
Q ss_pred EEEcCCCCCCCCHHHHHHHHHhcCCCEEEEEEEcCC-CccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCccC
Q 001989 705 VSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPS-THGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIG 783 (985)
Q Consensus 705 v~v~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~pn-~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~g 783 (985)
+.+|++.+|.+|++.+++.|+ ++|++|.+.+.| ..|+++ |++||+++|++.|+.||+|+||..+...+ +..+++
T Consensus 159 t~lpv~~~~~~d~~~~~~~i~---~~T~lv~I~~Vnn~~gv~~-Pv~EI~~icr~~~v~v~~DaAQavG~i~v-DV~eln 233 (428)
T KOG1549|consen 159 TYLPVEDSGLVDISKLREAIR---SKTRLVSIMHVNNEIGVLQ-PVKEIVKICREEGVQVHVDAAQAVGKIPV-DVQELN 233 (428)
T ss_pred EEeccCccccccHHHHHHhcC---CCceEEEEEecccCccccc-cHHHHHHHhCcCCcEEEeehhhhcCCccc-cHHHcC
Confidence 999999889999999999998 999999999875 699999 89999999999999999999997666553 667899
Q ss_pred CcEEEeCCcccccccCCCCCCceEEEEEcc
Q 001989 784 ADVCHLNLHKTFCIPHGGGGPGMGPIGVKK 813 (985)
Q Consensus 784 ~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~ 813 (985)
+|+++.++|||| |.||+|++|+++
T Consensus 234 ~D~~s~s~HK~y------gp~~iGaLYvr~ 257 (428)
T KOG1549|consen 234 ADFLSISAHKIY------GPPGIGALYVRR 257 (428)
T ss_pred chheeeeccccc------CCCcceEEEEcc
Confidence 999999999998 456899999996
|
|
| >cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.4e-20 Score=213.28 Aligned_cols=295 Identities=16% Similarity=0.095 Sum_probs=207.3
Q ss_pred hHHHHHHHHHHHHHHhcCCCCcc-eeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEe
Q 001989 208 GRLESLLNFQTMIADLTGLPMSN-ASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVS 286 (985)
Q Consensus 208 g~l~~i~e~q~~ia~L~g~~~~~-~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v 286 (985)
+..+.+.++++.+++++|.+..+ +.++.++|.++..++.++ . ++|++|+++...|++.. +...++..|.+++.+
T Consensus 29 ~~~~~~~~~~~~la~~~g~~~~~~~~~~~~~t~al~~~~~~~-~--~~g~~vl~~~~~~~~~~--~~~~~~~~g~~~~~v 103 (356)
T cd06451 29 EFLALMDEILEGLRYVFQTENGLTFLLSGSGTGAMEAALSNL-L--EPGDKVLVGVNGVFGDR--WADMAERYGADVDVV 103 (356)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCEEEEecCcHHHHHHHHHHh-C--CCCCEEEEecCCchhHH--HHHHHHHhCCCeEEe
Confidence 34577888999999999996544 557777787665555444 2 37899999988887631 112233457777776
Q ss_pred Cc--------hhhhc-cCC-CEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCC-CCCCcccceEEEe
Q 001989 287 DL--------KDIDY-KSG-DVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTIL-KPPGELGADIVVG 354 (985)
Q Consensus 287 ~~--------~~l~~-l~~-~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l-~~~~~~GaDi~v~ 354 (985)
+. +++++ +++ ++++|++++| |.+|.+.|+++|+++||++|+++++|+ .+++|.. .+..++|+|++++
T Consensus 104 ~~~~~~~~~~~~l~~~i~~~~~~~v~i~~~~~~~G~~~~~~~i~~~a~~~~~~li~D~-~~~~g~~~~~~~~~~~d~~~~ 182 (356)
T cd06451 104 EKPWGEAVSPEEIAEALEQHDIKAVTLTHNETSTGVLNPLEGIGALAKKHDALLIVDA-VSSLGGEPFRMDEWGVDVAYT 182 (356)
T ss_pred ecCCCCCCCHHHHHHHHhccCCCEEEEeccCCCcccccCHHHHHHHHHhcCCEEEEee-ehhccCccccccccCccEEEe
Confidence 43 35555 666 8999999887 779999999999999999999999953 4456643 3456789999999
Q ss_pred cC-ccccccCCCCCCcEEEEEEchhhHhcCCC--ceeeeeecCCCCcceeeecccccccc--c-ccccCCCccchhHHHH
Q 001989 355 SA-QRFGVPMGYGGPHAAFLATSQEYKRMMPG--RIVGVSIDSSGKPALRVAMQTREQHI--R-RDKATSNICTAQALLA 428 (985)
Q Consensus 355 s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~--~~vG~t~d~~g~~~~~l~l~tre~~i--r-re~atsni~t~~~l~a 428 (985)
++ |+|++| +|+|++++++++++.+.. ...+ +.+.++...+.. + .+.+|.++ ..+++
T Consensus 183 s~~K~l~~p-----~g~G~l~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~t~~~---~~~~a 244 (356)
T cd06451 183 GSQKALGAP-----PGLGPIAFSERALERIKKKTKPKG----------FYFDLLLLLKYWGEGYSYPHTPPV---NLLYA 244 (356)
T ss_pred cCchhccCC-----CCcceeEECHHHHHHHHhcCCCCc----------eeecHHHHHhhhcccCCCCCCChH---HHHHH
Confidence 98 777654 357899999988876642 1111 122211111111 1 12233332 34556
Q ss_pred HHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCC--CCcceE-EEecC-C--HHHHHHHHHHc-Cceeee
Q 001989 429 NMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGL--PFFDTV-KVKCA-D--AHAIASAAYKI-EMNLRV 501 (985)
Q Consensus 429 ~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~--~~~~~~-~~~~~-~--~~~v~~~L~~~-GI~~~~ 501 (985)
+.+++ .++..+|++++.++..++++++++.|+++| +++..+ .+...+ .+..+ + ..++.++|.++ ||.+..
T Consensus 245 ~~aal--~~l~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~gI~~~~ 321 (356)
T cd06451 245 LREAL--DLILEEGLENRWARHRRLAKALREGLEALG-LKLLAKPELRSPTVTAVLVPEGVDGDEVVRRLMKRYNIEIAG 321 (356)
T ss_pred HHHHH--HHHHHhhHHHHHHHHHHHHHHHHHHHHHcC-CeeccCcccCCCceEEEECCCCCCHHHHHHHHHHhCCEEEec
Confidence 65665 555667999999999999999999999987 888742 223333 23443 2 78999999998 998754
Q ss_pred e----cCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 502 V----DSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 502 ~----~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
. .++.+|+|++.++|+||+++++++|..
T Consensus 322 g~~~~~~~~iRis~~~~~~~e~v~~~~~~l~~ 353 (356)
T cd06451 322 GLGPTAGKVFRIGHMGEATREDVLGVLSALEE 353 (356)
T ss_pred ccccccCCEEEEecCCCCCHHHHHHHHHHHHH
Confidence 2 246899999999999999999999974
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway. |
| >TIGR03301 PhnW-AepZ 2-aminoethylphosphonate aminotransferase | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.8e-20 Score=212.25 Aligned_cols=314 Identities=12% Similarity=0.115 Sum_probs=203.2
Q ss_pred HHHHHHHHHHHHHHHhCCCcc--c-eecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEE-cCCCCcc-cHHHHHHCCcEE
Q 001989 630 YQEMFNNLGEWLCTITGFDSF--S-LQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCII-PVSAHGT-NPATAAMCGMKI 704 (985)
Q Consensus 630 ~~~~~~e~~~~la~l~G~~~~--~-~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv-~~~~Hg~-~~~~a~~~G~~v 704 (985)
+.+..+++++++++++|.+.. . ++.++|++++.+++.++. .+++++|+ ....|+. ....++..|+++
T Consensus 29 ~~~~~~~~~~~la~~~~~~~~~~~i~~~~~gt~~l~~~~~~~~--------~~~~~vi~~~~~~~~~~~~~~a~~~g~~~ 100 (355)
T TIGR03301 29 FNDVTDQVRDRLLALAGGDDNHTCVLLQGSGTFAVEATIGSLV--------PRDGKLLVLINGAYGERLAKICEYLGIPH 100 (355)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCcEEEEeCCcHHHHHHHHHhcc--------CCCCeEEEECCCchhhHHHHHHHHcCCce
Confidence 346688999999999999753 2 345677777654444321 24556554 5554443 334567889999
Q ss_pred EEEcCCCCCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCccC
Q 001989 705 VSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIG 783 (985)
Q Consensus 705 v~v~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~g 783 (985)
+.++.++++.+|+++++++++++ ++++.|+++++ |.+|.+. |+++|+++|+++|+++++|+++..+...+ +...++
T Consensus 101 ~~i~~~~~~~~d~~~l~~~l~~~-~~~~~v~~~~~~~~~G~~~-~~~~i~~l~~~~~~~livD~~~s~g~~~~-~~~~~~ 177 (355)
T TIGR03301 101 TDLNFSEYEPPDLNRIEEALAAD-PDITHVATVHHETTTGILN-PLEAIAKVARSHGAVLIVDAMSSFGAIPI-DIEELD 177 (355)
T ss_pred EEEecCCCCCCCHHHHHHHHHhC-CCceEEEEEecCCcccchh-HHHHHHHHHHHcCCEEEEEeccccCCccc-chhhcC
Confidence 99998877899999999999742 45677777776 4689998 89999999999999999999875432222 345678
Q ss_pred CcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCC---CCC-CCCCCCCCCCCcchhhhHHHHHHHHH
Q 001989 784 ADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGI---PAP-EKSQPLGTIAAAPWGSALILPISYTY 859 (985)
Q Consensus 784 ~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~---~~~-~~~~~~~~i~s~~~g~~~~~~~a~a~ 859 (985)
+|++++++||+++ |+||+|++++++++.+.+.........+. ..+ .+...+.... +.....++.+.
T Consensus 178 ~d~~~~s~~K~l~-----~~~G~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~-----~~~~~~a~~~a 247 (355)
T TIGR03301 178 VDALIASANKCLE-----GVPGFGFVIARRDLLEASAGNARSLYLDLYDQWAYMEKTGKWRFTP-----PTHTVYAFAQA 247 (355)
T ss_pred ccEEEecCCcccc-----cCCceeEEEECHHHHHHhhCCCCCceeeHHHHHHHhhhcCCCCCCC-----cHHHHHHHHHH
Confidence 9999999999984 45789999999876544331110000000 000 0000011111 11222333445
Q ss_pred HHHhcHHH-HHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCC
Q 001989 860 IAMMGSKG-LTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTM 937 (985)
Q Consensus 860 l~~lg~eG-l~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~ 937 (985)
+..+..+| +.+..++..++++++.+.|++ ++++.......... .+.+.++. ....+..++.++|.++||.+...
T Consensus 248 l~~~~~~g~~~~~~~~~~~~~~~~~~~L~~~g~~~~~~~~~~~~~-~~~~~~~~---~~~~~~~~~~~~l~~~gi~i~~~ 323 (355)
T TIGR03301 248 LEELEAEGGVPARIARYRRNRELLVDGLRALGFQPLLPERWQSPI-IVSFLYPD---DPDFDFDDFYQELKERGFVIYPG 323 (355)
T ss_pred HHHHHHcccHHHHHHHHHHHHHHHHHHHHHcCCeeecCCCCCCCc-EEEEECCC---CCcchHHHHHHHHHHCCEEEECC
Confidence 56565555 777777888899999999977 55543221111111 12334331 01135578999999999998654
Q ss_pred CCCCCCEEEEeccCCCCHHHHHHHHccCChhHH
Q 001989 938 SWPVPGTLMIEPTESESKSWTGIVMLSSPSEKK 970 (985)
Q Consensus 938 ~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~ 970 (985)
.....+.+||+++.+++++|+++ +++.|+++
T Consensus 324 ~~~~~~~iRis~~~~~~~~~i~~--~~~~l~~~ 354 (355)
T TIGR03301 324 KLTLADTFRIGTIGEIDAADIER--LLEAIKDA 354 (355)
T ss_pred ccccccEEEEecCCCCCHHHHHH--HHHHHHhh
Confidence 32223789999999999999999 77777654
|
This family includes a number of 2-aminoethylphosphonate aminotransferases, some of which are indicated to operate in the catabolism of 2-aminoethylphosphonate (AEP) and others which are involved in the biosynthesis of the same compound. The catabolic enzyme (PhnW, ) is known to use pyruvate:alanine as the transfer partner and is modeled by the equivalog-level alignment (TIGR02326). The PhnW family is apparently a branch of a larger tree including genes (AepZ) adjacent to others responsible for the biosynthesis of phosphonoacetaldehyde. The identity of the transfer partner is unknown for these enzymes and considering the reversed flux compared to PhnW, it may very well be different. |
| >PRK13479 2-aminoethylphosphonate--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=6.6e-20 Score=210.64 Aligned_cols=318 Identities=13% Similarity=0.134 Sum_probs=206.4
Q ss_pred HHHHHHHHHHHHHHHhCCCc--c-ceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCC-CCccc-HHHHHHCCcEE
Q 001989 630 YQEMFNNLGEWLCTITGFDS--F-SLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVS-AHGTN-PATAAMCGMKI 704 (985)
Q Consensus 630 ~~~~~~e~~~~la~l~G~~~--~-~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~-~Hg~~-~~~a~~~G~~v 704 (985)
+.+..+++++.+++++|.+. . .++.++|++|..+++.++. .++++|++... .++.. ...++..|+++
T Consensus 35 ~~~~~~~~~~~l~~l~~~~~~~~~i~~~~~gt~~l~~~~~~l~--------~~~~~vlv~~~~~~~~~~~~~~~~~g~~~ 106 (368)
T PRK13479 35 FNALTASVRAKLVAIATGEEGYTCVPLQGSGTFSVEAAIGSLV--------PRDGKVLVPDNGAYGARIAQIAEYLGIAH 106 (368)
T ss_pred HHHHHHHHHHHHHHHhCCCCCceEEEEcCCcHHHHHHHHHhcc--------CCCCeEEEEeCCchHHHHHHHHHHcCCcE
Confidence 33567899999999999864 2 3456778877755544432 25567777543 23222 24467889999
Q ss_pred EEEcCCCCCCCCHHHHHHHHHhcCCCEEEEEEEcCC-CccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCccC
Q 001989 705 VSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPS-THGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIG 783 (985)
Q Consensus 705 v~v~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~pn-~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~g 783 (985)
+.+|.++++.+|++++++++++. +++++|++++|+ .+|... |+++|.++||++|++++||+++..+...+ +...++
T Consensus 107 ~~i~~~~~~~~d~~~l~~~l~~~-~~~~~v~~~~~~~~tG~~~-~~~~i~~l~~~~~~~livDa~~~~g~~~~-~~~~~~ 183 (368)
T PRK13479 107 VVLDTGEDEPPDAAEVEAALAAD-PRITHVALVHCETTTGILN-PLDEIAAVAKRHGKRLIVDAMSSFGAIPI-DIAELG 183 (368)
T ss_pred EEEECCCCCCCCHHHHHHHHHhC-CCCcEEEEEcccCcccccc-CHHHHHHHHHHcCCEEEEEcccccCCccc-cccccC
Confidence 99999877889999999999732 467788899985 699998 89999999999999999998875433222 345678
Q ss_pred CcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCC---CCCCCCCCCCCCCCcchhhhHHHHHHHHHH
Q 001989 784 ADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGI---PAPEKSQPLGTIAAAPWGSALILPISYTYI 860 (985)
Q Consensus 784 ~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~---~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l 860 (985)
+|++++++|||++ |+||+|++++++++.+.+.........+. ..............+ ........+.+
T Consensus 184 ~d~~v~s~~K~l~-----g~~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~----~~~~~~l~~al 254 (368)
T PRK13479 184 IDALISSANKCIE-----GVPGFGFVIARRSELEACKGNSRSLSLDLYDQWAYMEKTGQWRFTPP----THVVAAFYQAL 254 (368)
T ss_pred ceEEEecCccccc-----cCCCceEEEECHHHHHHhhcCCCCeeecHHHHHhhhcccCCCCCCCc----HHHHHHHHHHH
Confidence 9999999999984 45689999999876544432110000000 000000000000111 11112223444
Q ss_pred HHhcHH-HHHHHHHHHHHHHHHHHHHhhc-cCCeeecCC-CCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCC
Q 001989 861 AMMGSK-GLTEASKIAILNANYMAKRLEK-HYPILFRGV-NGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTM 937 (985)
Q Consensus 861 ~~lg~e-Gl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~-~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~ 937 (985)
..+..+ ++.+..++..++++++++.|++ ++++...+. ..+. .+.+.++. ..+.+..++.++|.++||.+...
T Consensus 255 ~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~--~~~~~~~~---~~~~~~~~l~~~L~~~gi~v~~g 329 (368)
T PRK13479 255 LELEEEGGVPARGARYANNQRTLVAGMRALGFEPLLDAEIQSPI--IVTFHAPA---DPAYDFKEFYERLKEQGFVIYPG 329 (368)
T ss_pred HHHHHhhCHHHHHHHHHHHHHHHHHHHHHcCCcccCCchhcCce--EEEEECCC---CCCcCHHHHHHHHHHCCEEEecC
Confidence 444344 4677777888899999999987 565432210 0111 12232221 11246788999999999998543
Q ss_pred CCCCCCEEEEeccCCCCHHHHHHHHccCChhHHHHhh
Q 001989 938 SWPVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRL 974 (985)
Q Consensus 938 ~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~ 974 (985)
..+..+.+|++..-++|.||+++ +++.|+++++++
T Consensus 330 ~~~~~~~iRis~~~~~t~edi~~--~l~~L~~~l~~~ 364 (368)
T PRK13479 330 KLTQVDTFRIGCIGDVDAADIRR--LVAAIAEALYWM 364 (368)
T ss_pred CCCCCCEEEEecCCCCCHHHHHH--HHHHHHHHHHHc
Confidence 21223689999877899999999 889999988765
|
|
| >PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=5e-20 Score=212.90 Aligned_cols=304 Identities=14% Similarity=0.144 Sum_probs=198.0
Q ss_pred HHHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcC--C
Q 001989 633 MFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGT--D 710 (985)
Q Consensus 633 ~~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~--d 710 (985)
.+.++++.+++++|.+.+. +.++|++|+.+++.++. .++++|+++...|.+....++..|++++.+|+ +
T Consensus 64 ~~~~l~~~lA~~~g~~~~~-~~~g~t~a~~~al~~l~--------~~gd~Vlv~~~~h~s~~~~~~~~G~~~~~v~~~~~ 134 (387)
T PRK09331 64 PIADFHEDLAEFLGMDEAR-VTHGAREGKFAVMHSLC--------KKGDYVVLDGLAHYTSYVAAERAGLNVREVPKTGY 134 (387)
T ss_pred HHHHHHHHHHHHhCCCcEE-EeCCHHHHHHHHHHHhc--------CCCCEEEECCCchHHHHHHHHHcCCEEEEEeCccC
Confidence 4678999999999998654 45667777654444331 36789999988887776667889999999998 6
Q ss_pred CCCCCCHHHHHHHHHhc----CCCEEEEEEEcCC-CccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCccCCc
Q 001989 711 AKGNINIEELRKAAEAN----RDNLSTLMVTYPS-THGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIGAD 785 (985)
Q Consensus 711 ~~g~iD~e~L~~~i~~~----~~~t~~Vvv~~pn-~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~g~D 785 (985)
+++.+|++++++++++. .+++++|++++|+ .+|.+. |+++|+++||++|++++||++|..+..++ ....+|+|
T Consensus 135 ~~~~~d~~~l~~~l~~~~~~~~~~~~lV~l~~~~~~tG~~~-~l~~I~~la~~~g~~livD~a~~~g~~~~-~~~~~g~D 212 (387)
T PRK09331 135 PEYKITPEAYAEKIEEVKEETGKPPALALLTHVDGNYGNLA-DAKKVAKVAHEYGIPFLLNGAYTVGRMPV-DGKKLGAD 212 (387)
T ss_pred cCCCcCHHHHHHHHHHhhhccCCCCEEEEEECCCCCCcccc-cHHHHHHHHHHcCCEEEEECCcccCCcCC-CHHHcCCC
Confidence 77899999999999742 1478999999996 499998 89999999999999999999986443332 33467899
Q ss_pred EEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCc--cccCCCCCCCCCCCCCC-CCCCcchhhhHHHHHHHHHHHH
Q 001989 786 VCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHP--VVSTGGIPAPEKSQPLG-TIAAAPWGSALILPISYTYIAM 862 (985)
Q Consensus 786 i~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~--~g~~~~~~~~~~~~~~~-~i~s~~~g~~~~~~~a~a~l~~ 862 (985)
++++|+||+|+ +++|+|++++++++.+.+.... +.. . .....+ +... .+ +..+++.+..
T Consensus 213 ~~~~s~~K~l~-----~~~~~G~l~~~~~~i~~~~~~~~~~~~------~-~~~~~~~~~~~----~~--~~~~~aal~~ 274 (387)
T PRK09331 213 FIVGSGHKSMA-----ASAPSGVLATTEEYADKVFRTSRKFGV------K-EVELLGCTLRG----AP--LVTLMASFPH 274 (387)
T ss_pred EEEeeCccccc-----CCCCEEEEEECHHHHhhcccccCCCcc------c-ceeeeceecCc----hH--HHHHHHHHHH
Confidence 99999999995 3458999999987665442110 000 0 000000 1110 11 1111222322
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHHhhc--cCCeeecCCCCceeeEEEEEecCc---cccCCCCHHHHHHHHHHCCCccCCC
Q 001989 863 MGSKGLTEASKIAILNANYMAKRLEK--HYPILFRGVNGTVAHEFIVDLRGL---KNTAGIEPEDVAKRLMDYGFHGPTM 937 (985)
Q Consensus 863 lg~eGl~~~~~~~~~~a~~l~~~L~~--g~~l~~~~~~~~~~~~~iv~~~~~---~~~~g~~~~~v~~~L~~~Gi~~~~~ 937 (985)
+... + +..++..+++++++++|++ |+++....+.. .+.+.++.+.+ ....+.++.++.++|.++||..-.
T Consensus 275 ~~~~-~-~~~~~~~~~~~~l~~~L~~l~g~~~~~~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gI~~~~- 349 (387)
T PRK09331 275 VVER-V-KRWDEEVKKARWFVDELEKIEGFKQLGEKPRN--HDLMKFETPSFDEIAKKHKRRGFFLYEELKKRGIHGIK- 349 (387)
T ss_pred HHHH-H-HHHHHHHHHHHHHHHHHhcCCCEEEeccCcCc--CCeEEEeCCchhHHhhhccccchhHHHHHHHcCceEEc-
Confidence 2111 1 2344567788899999986 45543111111 11122332211 000123456799999999997311
Q ss_pred CCCCCCEEEEeccCCCCHHHHHHHHccCChhHHHHhh
Q 001989 938 SWPVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRL 974 (985)
Q Consensus 938 ~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~ 974 (985)
+..+.++...+..+|++|+++ ++++|++++.++
T Consensus 350 --~~~~~i~ri~~~g~t~~di~~--l~~aL~~i~~~~ 382 (387)
T PRK09331 350 --PGATKEFKLSTYGLTWEQVEY--VADAFKEIAEKY 382 (387)
T ss_pred --cCCceEEEEEeccCCHHHHHH--HHHHHHHHHHhc
Confidence 112344444455589999999 888998887754
|
|
| >TIGR01788 Glu-decarb-GAD glutamate decarboxylase | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.2e-19 Score=207.95 Aligned_cols=348 Identities=15% Similarity=0.107 Sum_probs=224.1
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhcCCC-ccceecCCCCCCC-CCcHHHHHHHHhCCcccccc-CCChhhHhhhHHHHHHH
Q 001989 139 MKFSKFDEGLTESQMIEHMQKLASMNK-VYKSFIGMGYYNT-HVPPVILRNIMENPAWYTQY-TPYQAEIAQGRLESLLN 215 (985)
Q Consensus 139 ~~lp~~~~~~se~e~~~~~~~l~~~n~-~~~~~lG~g~y~~-~~p~~v~~~i~~~~~~~t~~-~pyq~e~sqg~l~~i~e 215 (985)
..|| +++++..|+++++...--... ....|.|. +.. ..|.+.. .+.+- +-+.+ +|.. +....+.+.+
T Consensus 15 ~~~p--~~~~~~~~~~~~~~~~iyld~~a~~~~~~~--~tt~~~p~~~~-~~~~~--l~~~~~np~s---~~~~~~le~~ 84 (431)
T TIGR01788 15 YRMP--EEEMPPDAAYQLIHDELSLDGNPRLNLATF--VTTWMEPEARK-LMDET--INKNMIDKDE---YPQTAEIENR 84 (431)
T ss_pred ccCC--CCCCCHHHHHHHHHHHhhhcCCcceeeeee--eCCCCCHHHHH-HHHHH--HhcCCCCccc---CccHHHHHHH
Confidence 4677 688999999999986533221 11122221 111 2444432 33221 11111 2322 2333488999
Q ss_pred HHHHHHHhcCCC-C-cce--eeccchHHHHHHHHHHhhhh--c-----C---CCCEEEEcCCCChhHHHHHHHhhcCCCe
Q 001989 216 FQTMIADLTGLP-M-SNA--SLLDEGTAAAEAMAMCNNIQ--K-----G---KKKTFIIASNCHPQTIDICITRADGFDI 281 (985)
Q Consensus 216 ~q~~ia~L~g~~-~-~~~--sl~~~~ta~~ea~~~a~~~~--~-----~---~g~~Vlv~~~~H~s~~~~~~~~a~~~gi 281 (985)
.++++|+++|++ . ..+ .+++|||.+...++.+.+.. . + .+.+|++++.+|+++.+.++. .|+
T Consensus 85 ~~~~la~llg~~~~~~~~~g~~TsGgTEAn~~al~~ar~~~~~~~~~~g~~~~~~~ii~s~~~H~sv~ka~~~----lg~ 160 (431)
T TIGR01788 85 CVNMLADLWHAPAKDAEAVGTSTIGSSEAIMLGGLAMKWRWRKRMEAAGKPTDKPNLVMGSNVQVCWEKFARY----FDV 160 (431)
T ss_pred HHHHHHHHhCCCCCCCCCeEEEechHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEcCcchHHHHHHHHH----cCc
Confidence 999999999998 3 234 34688885443333222211 0 0 124799999999999988753 467
Q ss_pred EEEEeCc---------hhhhc-cCCCEeEEEEEcC-CCCeeeccHHHHHHHHHhC------CcEEEEEe-cCcc-----c
Q 001989 282 KVVVSDL---------KDIDY-KSGDVCGVLVQYP-GTEGEVLDYGDFIKNAHAN------GVKVVMAT-DLLA-----L 338 (985)
Q Consensus 282 ~v~~v~~---------~~l~~-l~~~t~~V~v~~p-n~~G~v~di~~I~~~a~~~------galliV~a-~~~~-----l 338 (985)
+++.+++ ++|++ ++++|.+|+++.. |.+|.++||++|+++|+++ |++++||+ +..+ .
T Consensus 161 ~v~~i~~d~~~~~vd~~~L~~~i~~~t~lV~~t~g~t~tG~idpi~~I~~i~~~~~~~~~~~~~~HvDaaq~g~~~p~~~ 240 (431)
T TIGR01788 161 ELREVPMDPGRYVIDPEQVVEAVDENTIGVVCILGTTYTGEYEDVKALNDALDEYNAKTGWDIPIHVDAASGGFIAPFVY 240 (431)
T ss_pred eeEEEecCCCceeeCHHHHHHHHhhCCeEEEEEeCCCCCcccCCHHHHHHHHHHHHhhhCCCceEEEecccHHHHHHHhC
Confidence 7766654 34556 7889999999986 6799999999999999999 99999953 3211 1
Q ss_pred cCCC-CCCcccceEEEecCcccc-ccCCCCCCcEEEEEEchh--hHhcC--CCceeeeeecCCCCcceeeeccccccccc
Q 001989 339 TILK-PPGELGADIVVGSAQRFG-VPMGYGGPHAAFLATSQE--YKRMM--PGRIVGVSIDSSGKPALRVAMQTREQHIR 412 (985)
Q Consensus 339 g~l~-~~~~~GaDi~v~s~k~lg-~P~~~GGP~~G~l~~~~~--~~~~l--p~~~vG~t~d~~g~~~~~l~l~tre~~ir 412 (985)
+-+. .....|+|.++.+++||+ +| +|+|+++++++ +.+.+ .+.++|.. ...+.+.. .|
T Consensus 241 ~~~~~~~~~~~~DSis~s~HK~~~~P-----~g~G~l~~r~~~~l~~~~~~~~~yl~~~-----~~~~t~~~------sR 304 (431)
T TIGR01788 241 PDLEWDFRLPRVKSINVSGHKYGLVY-----PGVGWVIWRDEEALPEELIFHVNYLGGD-----EPTFTLNF------SR 304 (431)
T ss_pred CCchhhcCCCCceEEEECchhccCCC-----CCcEEEEEeChHHcchhheecccccCCC-----CCCcceec------Cc
Confidence 1111 113468999999997664 44 35789999875 22222 11122210 00011111 11
Q ss_pred ccccCCCccchhHHHHHHHHHH--HHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCC-CCcceEEEecC-----C
Q 001989 413 RDKATSNICTAQALLANMAAMY--AVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGL-PFFDTVKVKCA-----D 484 (985)
Q Consensus 413 re~atsni~t~~~l~a~~aa~~--l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~-~~~~~~~~~~~-----~ 484 (985)
+ +.-++ .+| +..+|.+|++++.+++.++++||.++|++.++++++.+ +.++.++|+.+ +
T Consensus 305 ~-----------g~~al--~~w~~l~~lG~~G~~~i~~~~~~la~~l~~~L~~~~~~el~~~~~~~~iV~Fr~~~~~~~~ 371 (431)
T TIGR01788 305 P-----------ANQVI--AQYYNFLRLGREGYRKIMQNSLDVARYLAEEIAKLGPFEIISDGSGIPLVAFKLKDDADPG 371 (431)
T ss_pred h-----------HHHHH--HHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEeeCCCCceEEEEEeCCCCCCC
Confidence 1 11111 133 57889999999999999999999999999977999865 66777777754 2
Q ss_pred --HHHHHHHHHHcCceeeee-c------CCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 485 --AHAIASAAYKIEMNLRVV-D------SNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 485 --~~~v~~~L~~~GI~~~~~-~------~~~lris~t~~~t~edId~li~aL~~ 529 (985)
..++.++|.++||.+... . .-.+|+++....+++.+|+|++.|++
T Consensus 372 ~~~~~l~~~L~~~G~~~~~~~~p~~~~~~~~lR~~~~~~~~~~~~~~~~~~~~~ 425 (431)
T TIGR01788 372 YTLYDLSHRLRERGWIVPAYTLPKNAEDIVVMRIVVREGFSRDLAELLIEDIEA 425 (431)
T ss_pred cCHHHHHHHHHHCCCcccCCCCCCccCCeEEEEEEecCCCCHHHHHHHHHHHHH
Confidence 678999999999965321 1 13589999999999999999999985
|
This model represents the pyridoxal phosphate-dependent glutamate (alpha) decarboxylase found in bacteria (low and hi-GC gram positive, proteobacteria and cyanobacteria), plants, fungi and at least one archaon (Methanosarcina). The product of the enzyme is gamma-aminobutyrate (GABA). |
| >PRK14012 cysteine desulfurase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.4e-19 Score=210.63 Aligned_cols=290 Identities=15% Similarity=0.138 Sum_probs=205.9
Q ss_pred HHHHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhh-hhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc
Q 001989 210 LESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNN-IQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL 288 (985)
Q Consensus 210 l~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~-~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~ 288 (985)
-+.+.++++.+|+++|+++.++.+++|+|.++..++.++. ...++||+|+++..+|+++...++.+ +..|++++.++.
T Consensus 48 ~~~~~~~r~~ia~~~g~~~~~v~~~~g~t~al~~~l~~l~~~~~~~gd~Vi~~~~~~~s~~~~~~~~-~~~g~~~~~v~~ 126 (404)
T PRK14012 48 EEAVDIARNQIADLIGADPREIVFTSGATESDNLAIKGAAHFYQKKGKHIITSKTEHKAVLDTCRQL-EREGFEVTYLDP 126 (404)
T ss_pred HHHHHHHHHHHHHHcCcCcCeEEEeCCHHHHHHHHHHHHHHhhcCCCCEEEEecCccHHHHHHHHHH-HhCCCEEEEEcc
Confidence 3678899999999999998889999999987776665432 11247899999999999999988764 346888888754
Q ss_pred --------hhhhc-cCCCEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCC-CCCcccceEEEecCc
Q 001989 289 --------KDIDY-KSGDVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILK-PPGELGADIVVGSAQ 357 (985)
Q Consensus 289 --------~~l~~-l~~~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~-~~~~~GaDi~v~s~k 357 (985)
+++++ ++++|++|+++++ |.+|.+.|+++|.++||++|+++++|+ .+++|... +..++++|+++++++
T Consensus 127 ~~~g~~d~~~l~~~i~~~t~lv~~~~~~n~tG~~~~~~~I~~la~~~g~~vivD~-a~~~g~~~~~~~~~~~D~~~~s~~ 205 (404)
T PRK14012 127 QSNGIIDLEKLEAAMRDDTILVSIMHVNNEIGVIQDIAAIGEICRERGIIFHVDA-AQSVGKVPIDLSKLKVDLMSFSAH 205 (404)
T ss_pred CCCCcCCHHHHHHhcCCCCEEEEEECcCCCccchhhHHHHHHHHHHcCCEEEEEc-chhcCCcccCcccCCCCEEEEehh
Confidence 35666 7889999999886 789999999999999999999999953 44666543 456789999999995
Q ss_pred cccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHHHH
Q 001989 358 RFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVY 437 (985)
Q Consensus 358 ~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~ 437 (985)
|+.+| +|.|+++++++...++.+.+.|.. . ..+.+.||.++ ..+.++.+++-+.
T Consensus 206 K~~gp-----~g~G~l~~~~~~~~~~~~~~~g~~------~-----------~~~~~~gt~~~---~~~~~l~~al~~~- 259 (404)
T PRK14012 206 KIYGP-----KGIGALYVRRKPRVRLEAQMHGGG------H-----------ERGMRSGTLPT---HQIVGMGEAARIA- 259 (404)
T ss_pred hccCC-----CceEEEEEecCCCCCCCceecCCC------c-----------cCCccCCCcCH---HHHHHHHHHHHHH-
Confidence 45333 357899998765444433333311 0 01234567776 3455555665222
Q ss_pred hCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCC-C-C-cce--EEEecCCHHHHHHHHHHcCceee----e-------
Q 001989 438 HGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGL-P-F-FDT--VKVKCADAHAIASAAYKIEMNLR----V------- 501 (985)
Q Consensus 438 ~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~-~-~-~~~--~~~~~~~~~~v~~~L~~~GI~~~----~------- 501 (985)
..+++++.++..++++++.+.|+++.++++.+. + . ... +.|...+..++.+.|.+.+|... .
T Consensus 260 --~~~~~~~~~~~~~l~~~l~~~L~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~g~~~~~~~~~~~~ 337 (404)
T PRK14012 260 --KEEMATENERIRALRDRLWNGIKDIEEVYLNGDLEQRVPGNLNVSFNYVEGESLIMALKDLAVSSGSACTSASLEPSY 337 (404)
T ss_pred --HhhHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCccccCCCEEEEEEeCcCHHHHHHhCCCeEEEchhhhCCCCCCCCH
Confidence 235677889999999999999998754776532 1 1 122 34443335667777754333210 0
Q ss_pred ----------ecCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 502 ----------VDSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 502 ----------~~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
...+.+|+|++.++|++|+|+++++|++
T Consensus 338 ~~~~~~~~~~~~~~~iRls~~~~~t~~dvd~~~~~l~~ 375 (404)
T PRK14012 338 VLRALGLNDELAHSSIRFSLGRFTTEEEIDYAIELVRK 375 (404)
T ss_pred HHHHcCCChhhcCceEEEEecCCCCHHHHHHHHHHHHH
Confidence 1147899999999999999999999985
|
|
| >TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.6e-19 Score=207.02 Aligned_cols=322 Identities=14% Similarity=0.118 Sum_probs=214.7
Q ss_pred cCCCCCCCCCcHHHHHHHHhCCccccccCCChhhHhhhHHHHHHHHHHHHHHhcCCCCc--ceeeccchHHHHHHHHHHh
Q 001989 171 IGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMS--NASLLDEGTAAAEAMAMCN 248 (985)
Q Consensus 171 lG~g~y~~~~p~~v~~~i~~~~~~~t~~~pyq~e~sqg~l~~i~e~q~~ia~L~g~~~~--~~sl~~~~ta~~ea~~~a~ 248 (985)
++.| |..+++.+.++ ..++ | ..+.+ ...+.+.+.++.+++|+|+++. ++.++.|+|.++++++.++
T Consensus 7 ~~pg--p~~~~~~v~~~-~~~~-~----~~~~~----~~~~~~~~~r~~la~l~~~~~~~~~i~~t~~~t~al~~~~~~l 74 (363)
T TIGR02326 7 LTPG--PLTTSRTVKEA-MLFD-W----CTWDS----DYNIVVEQIRQQLLALATAEEGYTSVLLQGSGTFAVEAVIGSA 74 (363)
T ss_pred ecCC--CCCCCHHHHHH-hCCC-C----CCCCh----HHHHHHHHHHHHHHHHhCCCCCceEEEEcCCCHHHHHHHHHhc
Confidence 3555 55677777633 3332 2 12222 3456788899999999999764 6888999999988887765
Q ss_pred hhhcCCCCE-EEEcCCCChhHHHHHHHhhcCCCeEEEEeCc--------hhhhc-cC--CCEeEEEEEcC-CCCeeeccH
Q 001989 249 NIQKGKKKT-FIIASNCHPQTIDICITRADGFDIKVVVSDL--------KDIDY-KS--GDVCGVLVQYP-GTEGEVLDY 315 (985)
Q Consensus 249 ~~~~~~g~~-Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~--------~~l~~-l~--~~t~~V~v~~p-n~~G~v~di 315 (985)
. . ++++ |+++...|+.... ..++..|++++.++. +++++ +. ++++.|.+.++ |++|.+.|+
T Consensus 75 ~-~--~~~~vlv~~~~~~~~~~~---~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~~v~~~~~~~~tG~~~~i 148 (363)
T TIGR02326 75 V-P--KDGKLLVVINGAYGARIV---QIAEYLGIPHHVVDTGEVEPPDVVEVEAILAADPAITHIALVHCETTTGILNPI 148 (363)
T ss_pred C-C--CCCeEEEEeCChhhHHHH---HHHHHcCCceEEEeCCCCCCCCHHHHHHHHhhCCCccEEEEEeecCCccccCcH
Confidence 3 2 4555 5567778876532 224457888877654 34555 44 35666777664 889999999
Q ss_pred HHHHHHHHhCCcEEEEEecCccccCCC-CCCcccceEEEecC-ccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeec
Q 001989 316 GDFIKNAHANGVKVVMATDLLALTILK-PPGELGADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSID 393 (985)
Q Consensus 316 ~~I~~~a~~~galliV~a~~~~lg~l~-~~~~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d 393 (985)
++|+++||++|++++||+ .+++|... +..+||+|++++++ |+|+ |+||+|+++++++.++++.+...+
T Consensus 149 ~~I~~l~~~~g~~livD~-~~~~g~~~~~~~~~~~D~~~~s~~K~l~-----~p~G~G~l~~~~~~~~~~~~~~~~---- 218 (363)
T TIGR02326 149 EAVAKLAHRHGKVTIVDA-MSSFGGIPIDIAELHIDYLISSANKCIQ-----GVPGFGFVIARQAELAACKGNARS---- 218 (363)
T ss_pred HHHHHHHHHcCCEEEEEc-cccccCcccchhhcCccEEEecCccccc-----cCCcceEEEECHHHHHHhhcCCCc----
Confidence 999999999999999963 45666542 44679999999998 6674 446789999999887765332211
Q ss_pred CCCCcceeeeccccccccccccc-CCCccchhHHHHHHHHHHHHHhCcc-hHHHHHHHHHHHHHHHHHHHhcCCCeEEcC
Q 001989 394 SSGKPALRVAMQTREQHIRRDKA-TSNICTAQALLANMAAMYAVYHGPE-GLKTIAQRVHGLAGTFALGLKKLGTVEVQG 471 (985)
Q Consensus 394 ~~g~~~~~l~l~tre~~irre~a-tsni~t~~~l~a~~aa~~l~~~g~~-Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~ 471 (985)
+.+++....+.....++ +.+..+.....++.+++ ..+..+ |++++.+++.++.+++++.|+++| ++++.
T Consensus 219 ------~~~~~~~~~~~~~~~~~~~~ft~~~~~~~al~~al--~~l~~~g~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~ 289 (363)
T TIGR02326 219 ------LSLDLYDQWRCMEDNHGKWRFTSPTHVVHAFAQAL--LELEKEGGVAARHQRYQQNQKTLVAGMRALG-FEPLL 289 (363)
T ss_pred ------eeecHHHHHHHHhccCCCCCCCCcHHHHHHHHHHH--HHHHHhhCHHHHHHHHHHHHHHHHHHHHHcC-Ceecc
Confidence 22221100000000011 11111224555665555 333333 689999999999999999999997 88764
Q ss_pred CC--Ccce-EEEecCC-----HHHHHHHHHHcCceeeeec---CCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 472 LP--FFDT-VKVKCAD-----AHAIASAAYKIEMNLRVVD---SNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 472 ~~--~~~~-~~~~~~~-----~~~v~~~L~~~GI~~~~~~---~~~lris~t~~~t~edId~li~aL~~ 529 (985)
++ ..+. +.|..+. ..++.+.|.++||.++... .+.+|++++.++|.+|+++++++|+.
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~L~~~gi~v~~g~~~~~~~iRi~~~~~~~~edv~~~l~~l~~ 358 (363)
T TIGR02326 290 DDEIQSPIITSFYSPEDPDYRFADFYQRLKEQGFVIYPGKVSQVDCFRIGNIGEVDAADITRLLTAIGK 358 (363)
T ss_pred CcccCCceEEEEECCCCCCCCHHHHHHHHHHCCEEEECCcCCCCCEEEEecCCCCCHHHHHHHHHHHHH
Confidence 32 2222 2344332 5789999999999885431 46899999889999999999999974
|
Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli. |
| >TIGR01366 serC_3 phosphoserine aminotransferase, putative | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.1e-19 Score=205.22 Aligned_cols=325 Identities=13% Similarity=0.035 Sum_probs=220.9
Q ss_pred CCCCCCCCCcHHHHHHHHhCCc--cccccCCChhhHhhhHHHHHHHHHHHHHHhcCCCCc-ceeec-cchHHHHHHHHHH
Q 001989 172 GMGYYNTHVPPVILRNIMENPA--WYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMS-NASLL-DEGTAAAEAMAMC 247 (985)
Q Consensus 172 G~g~y~~~~p~~v~~~i~~~~~--~~t~~~pyq~e~sqg~l~~i~e~q~~ia~L~g~~~~-~~sl~-~~~ta~~ea~~~a 247 (985)
+.| |..+|+.+.+++. .+. .+ ...-..++. .+.+.+.++.+++|+|++.. ++.++ .++|.++++++.+
T Consensus 8 ~pG--P~~~~~~v~~a~~-~~~~~~~-~~~hr~~~f----~~~~~~~r~~l~~l~~~~~~~~v~f~~gs~T~a~~~~~~~ 79 (361)
T TIGR01366 8 GSG--PSKVRLEQLQALT-TTAASLF-GTSHRQAPV----KNLVGRVREGLAELFSLPDGYEVILGNGGATAFWDAATFG 79 (361)
T ss_pred cCC--CcCCCHHHHHHHH-hcCcccc-ccCcCChHH----HHHHHHHHHHHHHHhCCCCCceEEEECCchhHHHHHHHHh
Confidence 455 5567788764433 221 11 012233332 47888999999999998644 67775 5599999988876
Q ss_pred hhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCch---hhhc-cCCCEeEEEEEc-CCCCeeeccHHHHHHHH
Q 001989 248 NNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDLK---DIDY-KSGDVCGVLVQY-PGTEGEVLDYGDFIKNA 322 (985)
Q Consensus 248 ~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~~---~l~~-l~~~t~~V~v~~-pn~~G~v~di~~I~~~a 322 (985)
+- .++.++++.+.|.+....+..++...+ ++.+++.+ +++. ++++|++|++++ +|.+|.+.|+++| +
T Consensus 80 l~----~~~~l~i~~G~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~lV~~~h~et~tG~~~pi~~I---~ 151 (361)
T TIGR01366 80 LI----EKKSLHLSFGEFSSKFAKAVKLAPWLG-EPIIVTADPGSAPEPQADPGVDVIAWAHNETSTGVAVPVRRP---E 151 (361)
T ss_pred cc----cccccEEecCHHHHHHHHHHHhhhccC-CceEEecCCCCCCCCccCCCCCEEEEcccCCccceecccccc---c
Confidence 52 224456677888777666644332223 44544432 3444 677899998876 6999999999998 4
Q ss_pred HhCCcEEEEEecCccccCCC-CCCcccceEEEecC-ccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcce
Q 001989 323 HANGVKVVMATDLLALTILK-PPGELGADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPAL 400 (985)
Q Consensus 323 ~~~galliV~a~~~~lg~l~-~~~~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~ 400 (985)
|++|++++||+ ..++|... +.. .+|++++++ |.|+.| ||++++++++++++++.+...|.. +.+ +
T Consensus 152 ~~~g~~~iVDa-vqs~g~~~idv~--~~D~~~~s~~K~lg~~-----~Gl~~~~~s~~~~~~~~~~~~~~~----~~p-~ 218 (361)
T TIGR01366 152 GSDDALVVIDA-TSGAGGLPVDIA--ETDVYYFAPQKNFASD-----GGLWLAIMSPAALERIEAIAASGR----WVP-E 218 (361)
T ss_pred ccCCCeEEEEc-CccccCCCCCHH--HCCEEEEEchhhcCCC-----CceEEEEECHHHHhhhhcccCCCC----CCc-h
Confidence 89999999954 34565442 223 289999999 545433 368889999999888764443310 111 2
Q ss_pred eeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcc-hHHHHHHHHHHHHHHHHHHHhcCCCeEEcC-CC--Cc-
Q 001989 401 RVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPE-GLKTIAQRVHGLAGTFALGLKKLGTVEVQG-LP--FF- 475 (985)
Q Consensus 401 ~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~-Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~-~~--~~- 475 (985)
.+++... ...+.+.+|.|......++++.+++ .++..+ |++.+.+++.+++++++++|.++++++++. .+ ..
T Consensus 219 ~~d~~~~-~~~~~~~~t~~tp~i~~i~~l~~al--~~l~~~gg~e~~~~r~~~l~~~l~~~l~~~~~~~~~~~~~~~~s~ 295 (361)
T TIGR01366 219 FLSLPTA-VDNSLKNQTYNTPAIATLALLAEQI--DWMNGNGGLDWAVARTADSSSRLYSWAQERPYATPFVTDPGKRSQ 295 (361)
T ss_pred hhhHHHH-HhccccCCCCCCchHHHHHHHHHHH--HHHHHccCHHHHHHHHHHHHHHHHHHHHhCCCcccCCCChhhccc
Confidence 3443222 1123456888887778888888887 566566 699999999999999999999997566652 21 11
Q ss_pred --ceEEEecCC--HHHHHHHHHHcCceeee----ecCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 476 --DTVKVKCAD--AHAIASAAYKIEMNLRV----VDSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 476 --~~~~~~~~~--~~~v~~~L~~~GI~~~~----~~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
..|++. ++ ..++.+.|.++||.+.. +..+.+|+|.+.++|.+|||+|+++|++
T Consensus 296 ~v~~v~~~-~g~~~~~v~~~L~~~gI~i~~~~~~l~~~~vRis~~~~~t~~di~~l~~al~~ 356 (361)
T TIGR01366 296 VVGTIDFV-DDIDAATVAKILRANGIVDTEPYRKLGRNQLRVAMFPAIDPDDVEALTECVDW 356 (361)
T ss_pred ceEEEECC-CccCHHHHHHHHHHCCCeeccCccccCCCcEEEEcCCCCCHHHHHHHHHHHHH
Confidence 234552 33 88999999999998743 1246799999999999999999999985
|
This model represents a putative variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in Mycobacterium tuberculosis and related high-GC Gram-positive bacteria. |
| >COG3844 Kynureninase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.6e-19 Score=189.68 Aligned_cols=307 Identities=15% Similarity=0.119 Sum_probs=225.0
Q ss_pred hhHHHHHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHH-HhhhhcCCCCEEEEcC-CCChhHHHHHHHhhcCCC--eE
Q 001989 207 QGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAM-CNNIQKGKKKTFIIAS-NCHPQTIDICITRADGFD--IK 282 (985)
Q Consensus 207 qg~l~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~-a~~~~~~~g~~Vlv~~-~~H~s~~~~~~~~a~~~g--i~ 282 (985)
+.|...=...-..+|-|+|+...++...++.+..+.-.+. +++.. ++++||+++ ..+|+-..+...+++-.+ .+
T Consensus 72 ~~W~~lp~~lgdklApLiGA~~~Evvv~dtts~nl~k~L~aalr~~--~~r~vIv~E~~~fpTdly~a~g~~~~~~~~~~ 149 (407)
T COG3844 72 ADWFDLPERLGDKLAPLIGARAGEVVVTDTTSINLFKVLAAALRPQ--EGRRVIVSEGDNFPTDLYIAEGLADLLGIGYD 149 (407)
T ss_pred CchhhchhHHHHHhhhhhcCCCCceEEeCCcchHHHHHHHHHhccC--CCceEEeecCCCCCcchhhhcchhhhhccccc
Confidence 3444444455578999999999999888888776655554 34433 577787777 578988877765554333 23
Q ss_pred EEEe-Cchhhhc-cCCCEeEEEEEcCCC-CeeeccHHHHHHHHHhCCcEEEEEecCccccCCC-CCCcccceEEEecC-c
Q 001989 283 VVVS-DLKDIDY-KSGDVCGVLVQYPGT-EGEVLDYGDFIKNAHANGVKVVMATDLLALTILK-PPGELGADIVVGSA-Q 357 (985)
Q Consensus 283 v~~v-~~~~l~~-l~~~t~~V~v~~pn~-~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~-~~~~~GaDi~v~s~-k 357 (985)
+..+ .++++++ ++++++.|++++.|+ +|...|+.+|.++||++|++++.+ -.++.|.+. .-..+|+|+.++++ |
T Consensus 150 ~~~~~~P~~~~~~~~dd~AvV~L~~V~y~TGql~dm~aiT~~AH~~galv~wD-LAHsaGavp~~Lh~~gaDfaigcsyK 228 (407)
T COG3844 150 LEGVIAPRALEEAITDDVAVVLLSHVNYKTGQLLDMRAITALAHQHGALVGWD-LAHSAGAVPVDLHAAGADFAIGCSYK 228 (407)
T ss_pred ceeeeChHHHHHhhccceEEEEeccccccccceeeHHHHHHHHHhcCceEEee-hhcccCCcceeecccCCCeeeeeece
Confidence 3222 3467777 899999999999986 899999999999999999998884 245777553 44789999999999 6
Q ss_pred cccccCCCCCCcE-EEEEEchhhHhcCCCceeeeeecCCCCcceeeecc-cccccccccccCCCccchhHHHHHHHHH-H
Q 001989 358 RFGVPMGYGGPHA-AFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQ-TREQHIRRDKATSNICTAQALLANMAAM-Y 434 (985)
Q Consensus 358 ~lg~P~~~GGP~~-G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~-tre~~irre~atsni~t~~~l~a~~aa~-~ 434 (985)
.| .||||+ +++++.+++.+..-+++.||.. +.++ |.+.-. +--.+++| +.|+++..+.+++-- -
T Consensus 229 YL-----NgGPGapa~l~v~~~h~e~~~~~lsgW~g--ha~p-f~m~~~y~p~~ga~r-----f~~gt~~V~s~aal~~a 295 (407)
T COG3844 229 YL-----NGGPGAPAGLFVAPRHRERSWPPLSGWWG--HARP-FAMEEVYAPGPGARR-----FLCGTQPVLSLAALEGA 295 (407)
T ss_pred ec-----cCCCCCceeEEeccccccccccccccccC--CCCc-chhhhccCcCccccc-----eeeCCcchhhhHHHhhh
Confidence 55 477876 9999999988887788899743 1233 544311 11245554 455555554432211 1
Q ss_pred HHHhCcchHHHHHHHHHHHHHHHHHHHhcC-C--CeEEcCC----CCcceEEEecCCHHHHHHHHHHcCceeeeecCCeE
Q 001989 435 AVYHGPEGLKTIAQRVHGLAGTFALGLKKL-G--TVEVQGL----PFFDTVKVKCADAHAIASAAYKIEMNLRVVDSNTV 507 (985)
Q Consensus 435 l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~-g--~~~~~~~----~~~~~~~~~~~~~~~v~~~L~~~GI~~~~~~~~~l 507 (985)
+.....-++.++.+++..+++|+.+.++.. + ++++..+ .+...+++..+.+.+|.+.|.++||......++.+
T Consensus 296 LDifa~~~i~~lR~kSlaLTd~fieLvEa~~~~~~l~l~tPr~~~~rGsqvS~~hp~~~~V~qaLi~rGVigD~R~P~vl 375 (407)
T COG3844 296 LDIFADVDITELRKKSLALTDYFIELVEARCEYYGLTLVTPRAHEERGSQVSLYHPHGYQVMQALIDRGVIGDFREPDVL 375 (407)
T ss_pred hhhhhhcCHHHHHHhhhHHHHHHHHHHHhccccCCcEEeccchhhhccceeeEecCcHHHHHHHHHHcCccccccCCCee
Confidence 466677789999999999999999998875 2 3677643 23456888888899999999999997655568999
Q ss_pred EEEecc-CCCHHHHHHHHHHHhC
Q 001989 508 TASFDE-TTTLEDVDKLFIVFAG 529 (985)
Q Consensus 508 ris~t~-~~t~edId~li~aL~~ 529 (985)
|+.+|+ |++-+|+-..+++|.+
T Consensus 376 RfgftPlY~~~~DVw~AV~~L~e 398 (407)
T COG3844 376 RFGFTPLYVSFVDVWDAVDALEE 398 (407)
T ss_pred eecCccceechhHHHHHHHHHHH
Confidence 999998 7899999888888874
|
|
| >TIGR03235 DNA_S_dndA cysteine desulfurase DndA | Back alignment and domain information |
|---|
Probab=99.84 E-value=7.3e-19 Score=200.83 Aligned_cols=263 Identities=11% Similarity=0.088 Sum_probs=193.7
Q ss_pred hhhHHHHHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhh-hcCCC-CEEEEcCCCChhHHHHHHHhhcCCCeEE
Q 001989 206 AQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNI-QKGKK-KTFIIASNCHPQTIDICITRADGFDIKV 283 (985)
Q Consensus 206 sqg~l~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~-~~~~g-~~Vlv~~~~H~s~~~~~~~~a~~~gi~v 283 (985)
+....+.+.++++.+++++|+++.++.+++|+|.+++.++.++.. ..+++ ++|+++..+||++...++.+ +..|+++
T Consensus 37 ~~~~~~~~~~~r~~la~~~g~~~~~v~~~~g~t~a~~~~l~~l~~~~~~~g~~~vi~~~~~~~s~~~~~~~~-~~~G~~v 115 (353)
T TIGR03235 37 GHNAKKAVERARKQVAEALGADTEEVIFTSGATESNNLAILGLARAGEQKGKKHIITSAIEHPAVLEPIRAL-ERNGFTV 115 (353)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCeEEEeCCHHHHHHHHHHHHHHhcccCCCCeeeEcccccHHHHHHHHHH-HhcCCEE
Confidence 334557788999999999999988899999999887776665421 11244 78999999999999998764 4569999
Q ss_pred EEeCc--------hhhhc-cCCCEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCC-CCCcccceEE
Q 001989 284 VVSDL--------KDIDY-KSGDVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILK-PPGELGADIV 352 (985)
Q Consensus 284 ~~v~~--------~~l~~-l~~~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~-~~~~~GaDi~ 352 (985)
+.++. +++++ +++++++|+++++ |.+|.+.|+++|+++||++|++++||. .+++|... +..++|+|++
T Consensus 116 ~~v~~~~~~~~d~~~l~~~l~~~~~lv~~~~~~n~tG~~~~~~~I~~l~~~~~~~~ivD~-a~~~g~~~~~~~~~~~D~~ 194 (353)
T TIGR03235 116 TYLPVDESGRIDVDELADAIRPDTLLVSIMHVNNETGSIQPIREIAEVLEAHEAFFHVDA-AQVVGKITVDLSADRIDLI 194 (353)
T ss_pred EEEccCCCCcCCHHHHHHhCCCCCEEEEEEcccCCceeccCHHHHHHHHHHcCCEEEEEc-hhhcCCccccccccCCCEE
Confidence 88764 35666 7788999999987 789999999999999999999999953 45666543 3467899999
Q ss_pred EecCccccccCCCCCCcEEEEEEchhhHhc--CCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHH
Q 001989 353 VGSAQRFGVPMGYGGPHAAFLATSQEYKRM--MPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANM 430 (985)
Q Consensus 353 v~s~k~lg~P~~~GGP~~G~l~~~~~~~~~--lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~ 430 (985)
+++++|+.+| ||+|+++++++.... +.+.+.|. . +..+.+.+|+|+ ..+.++.
T Consensus 195 ~~s~~K~~gp-----~g~g~l~~~~~~~~~~~~~~~~~~~------~-----------~~~~~~~gt~~~---~~~~al~ 249 (353)
T TIGR03235 195 SCSGHKIYGP-----KGIGALVIRKRGKPKAPLKPIMFGG------G-----------QERGLRPGTLPV---HLIVGMG 249 (353)
T ss_pred EeehhhcCCC-----CceEEEEEccCcccccccCceeeCC------C-----------CcCccccCCCCh---HHHHHHH
Confidence 9999545434 468999999875432 33322221 0 112345688887 4566666
Q ss_pred HHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCC--C-cceEEEecCC--HHHHHHHHHHcCceee
Q 001989 431 AAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLP--F-FDTVKVKCAD--AHAIASAAYKIEMNLR 500 (985)
Q Consensus 431 aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~--~-~~~~~~~~~~--~~~v~~~L~~~GI~~~ 500 (985)
+++ .++ .+|++++.+++.+++++++++|++.| ++++.++ . ...++|..++ ++++.+.|.+ ||.++
T Consensus 250 ~al--~~~-~~~~~~~~~~~~~l~~~l~~~l~~~g-~~~~~~~~~~~~~i~~~~~~~~~~~~v~~~L~~-~i~v~ 319 (353)
T TIGR03235 250 EAA--EIA-RRNAQAWEVKLRAMRNQLRDALQTLG-VKLNGDPAETIPHILNFSIDGVNSEALIVNLRA-DAAVS 319 (353)
T ss_pred HHH--HHH-HhhHHHHHHHHHHHHHHHHHHhccCC-eEEeCCcccccCCEEEEEeCCcCHHHHHHHHhC-CeEEE
Confidence 666 333 35889999999999999999999877 9987432 1 2245566565 7889999965 77664
|
This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase. |
| >PLN03032 serine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1e-18 Score=198.32 Aligned_cols=282 Identities=12% Similarity=0.038 Sum_probs=194.9
Q ss_pred hhhHHHHHHHHHHHHHHhcCCCCcc--eeeccchHHHHHHHHHHhhhhc--CCCCEEEEcCCCChhHHHHHHHhhcCCCe
Q 001989 206 AQGRLESLLNFQTMIADLTGLPMSN--ASLLDEGTAAAEAMAMCNNIQK--GKKKTFIIASNCHPQTIDICITRADGFDI 281 (985)
Q Consensus 206 sqg~l~~i~e~q~~ia~L~g~~~~~--~sl~~~~ta~~ea~~~a~~~~~--~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi 281 (985)
...+.+.+.+..+++|+|+|+++.. ..+++|||.+. ++++...+ .++.+|+++..+|+|+.+.++.+ |+
T Consensus 61 g~~a~~~e~~v~~~ia~llg~~~~~~~G~fTsGGTEaN---l~al~~ar~~~~~~~vi~s~~~H~Sv~kaa~~l----g~ 133 (374)
T PLN03032 61 GVHSRQFEVGVLDWFARLWELEKDEYWGYITTCGTEGN---LHGILVGREVFPDGILYASRESHYSVFKAARMY----RM 133 (374)
T ss_pred CccHHHHHHHHHHHHHHHhCCCCccCCEEEeCchHHHH---HHHHHHHHHhCCCcEEEeCCCceeHHHHHHHHc----CC
Confidence 3467889999999999999998765 48889998544 44332211 24568999999999999997653 34
Q ss_pred EEEEeC--------chhhhc-cCC---CEeEEEEEcC-CCCeeeccHHHHHHHHHhCC-----cEEEEEecCccccCCC-
Q 001989 282 KVVVSD--------LKDIDY-KSG---DVCGVLVQYP-GTEGEVLDYGDFIKNAHANG-----VKVVMATDLLALTILK- 342 (985)
Q Consensus 282 ~v~~v~--------~~~l~~-l~~---~t~~V~v~~p-n~~G~v~di~~I~~~a~~~g-----alliV~a~~~~lg~l~- 342 (985)
+++.++ +++|++ +++ ++.+|+++.. |.+|.++|+++|+++|+++| ++++||+ .++.+.+.
T Consensus 134 ~~~~V~~d~~g~id~~~L~~~i~~~~~~~~lvv~tagtt~tG~idpi~eI~~i~~~~g~~~~~~~lHvDa-A~gg~~~p~ 212 (374)
T PLN03032 134 EAVKVPTLPSGEIDYDDLERALAKNRDKPAILNVNIGTTVKGAVDDLDRILRILKELGYTEDRFYIHCDG-ALFGLMMPF 212 (374)
T ss_pred CCeEeeeCCCCcCcHHHHHHHHHHcCCCCEEEEEEecCcCCccCCCHHHHHHHHHHhCCCCCCeeEEEEc-cchhhhhhc
Confidence 444443 356766 654 4778888876 67999999999999999997 4899953 12222211
Q ss_pred ---C---CCcccceEEEecCccccc-cCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccc
Q 001989 343 ---P---PGELGADIVVGSAQRFGV-PMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDK 415 (985)
Q Consensus 343 ---~---~~~~GaDi~v~s~k~lg~-P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~ 415 (985)
. ....++|.++.+++|+++ |++ +|++++++++++.+... ..|.-.. +
T Consensus 213 ~~~~~~~~~~~~vDSis~s~HK~~g~P~g-----~G~ll~r~~~~~~~~~~-----------~~Yl~~~----d------ 266 (374)
T PLN03032 213 VSRAPEVTFRKPIGSVSVSGHKFLGCPMP-----CGVALTRKKHVKALSQN-----------VEYLNSR----D------ 266 (374)
T ss_pred cCCCcccCCCcCCcEEEECcccccCCCcC-----eEEEEEEchhhHhhccC-----------CcccCCC----C------
Confidence 0 123589999999966644 754 68899998777655210 0011000 0
Q ss_pred cCCCccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCCCcceEEEecCCHHHHHHHHHHc
Q 001989 416 ATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDTVKVKCADAHAIASAAYKI 495 (985)
Q Consensus 416 atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~~~L~~~ 495 (985)
..-.||-.+..++.....+..+|.+|++++.+++.++++|+.++|++.| ++++..|..++|+|..+.... +. +
T Consensus 267 -~ti~gSR~g~~~l~~w~~l~~~G~~g~~~~~~~~~~~a~~l~~~l~~~~-~~~~~~p~~~~V~f~~~~~~~----~~-~ 339 (374)
T PLN03032 267 -ATIMGSRNGHAPLYLWYTLRRKGYRGIKRDVQHCMRNAHYLKDRLTEAG-LTCRLNELSSTVVFERPMDEA----FI-K 339 (374)
T ss_pred -CcccCCCchHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHhCC-CcEEECCCceEEEEcCCCcHh----Hh-h
Confidence 0001111122222222236899999999999999999999999999987 887756666678887664222 22 5
Q ss_pred CceeeeecCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 496 EMNLRVVDSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 496 GI~~~~~~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
||.+.. .++.++++++..+|++.||+|++.|++
T Consensus 340 ~w~l~~-~~~~~hi~vm~~~~~~~id~fi~dl~~ 372 (374)
T PLN03032 340 KWQLAC-EGDIAHVVVMPNVTVEKLDEFVEELVE 372 (374)
T ss_pred eeeecc-cCCEEEEEECCCCCHHHHHHHHHHHhc
Confidence 787775 346899999999999999999999975
|
|
| >TIGR03301 PhnW-AepZ 2-aminoethylphosphonate aminotransferase | Back alignment and domain information |
|---|
Probab=99.84 E-value=9.8e-19 Score=199.58 Aligned_cols=295 Identities=14% Similarity=0.120 Sum_probs=200.7
Q ss_pred HHHHHHHHHHHHHhcCCCCc--ceeeccchHHHHHHHHHHhhhhcCCCCEE-EEcCCCChhHHHHHHHhhcCCCeEEEEe
Q 001989 210 LESLLNFQTMIADLTGLPMS--NASLLDEGTAAAEAMAMCNNIQKGKKKTF-IIASNCHPQTIDICITRADGFDIKVVVS 286 (985)
Q Consensus 210 l~~i~e~q~~ia~L~g~~~~--~~sl~~~~ta~~ea~~~a~~~~~~~g~~V-lv~~~~H~s~~~~~~~~a~~~gi~v~~v 286 (985)
.+.+.++++.+++++|+++. .+.++.+||.++++++.++. . +++++ +++...|++.... .++..|.+++.+
T Consensus 30 ~~~~~~~~~~la~~~~~~~~~~~i~~~~~gt~~l~~~~~~~~-~--~~~~vi~~~~~~~~~~~~~---~a~~~g~~~~~i 103 (355)
T TIGR03301 30 NDVTDQVRDRLLALAGGDDNHTCVLLQGSGTFAVEATIGSLV-P--RDGKLLVLINGAYGERLAK---ICEYLGIPHTDL 103 (355)
T ss_pred HHHHHHHHHHHHHHhcCCCCCcEEEEeCCcHHHHHHHHHhcc-C--CCCeEEEECCCchhhHHHH---HHHHcCCceEEE
Confidence 36677899999999999865 46678899988888776642 2 45665 5666677663322 234468777776
Q ss_pred Cc--------hhhhc-cC--CCEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCC-CCCcccceEEE
Q 001989 287 DL--------KDIDY-KS--GDVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILK-PPGELGADIVV 353 (985)
Q Consensus 287 ~~--------~~l~~-l~--~~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~-~~~~~GaDi~v 353 (985)
+. +++++ +. ++++.|++.++ |.+|.+.|+++|+++||++|++++||+ .+++|... +..++|+|+++
T Consensus 104 ~~~~~~~~d~~~l~~~l~~~~~~~~v~~~~~~~~~G~~~~~~~i~~l~~~~~~~livD~-~~s~g~~~~~~~~~~~d~~~ 182 (355)
T TIGR03301 104 NFSEYEPPDLNRIEEALAADPDITHVATVHHETTTGILNPLEAIAKVARSHGAVLIVDA-MSSFGAIPIDIEELDVDALI 182 (355)
T ss_pred ecCCCCCCCHHHHHHHHHhCCCceEEEEEecCCcccchhHHHHHHHHHHHcCCEEEEEe-ccccCCcccchhhcCccEEE
Confidence 53 34555 53 45667776665 779999999999999999999999964 55666432 34678999999
Q ss_pred ecC-ccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHH
Q 001989 354 GSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAA 432 (985)
Q Consensus 354 ~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa 432 (985)
+++ |+|+ |+||+|++++++++++.+.++. +.+.+++..-.+...+...+.+..+...+.++.++
T Consensus 183 ~s~~K~l~-----~~~G~g~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~a 247 (355)
T TIGR03301 183 ASANKCLE-----GVPGFGFVIARRDLLEASAGNA----------RSLYLDLYDQWAYMEKTGKWRFTPPTHTVYAFAQA 247 (355)
T ss_pred ecCCcccc-----cCCceeEEEECHHHHHHhhCCC----------CCceeeHHHHHHHhhhcCCCCCCCcHHHHHHHHHH
Confidence 998 6664 4567899999999887764221 11222221100111111122222222344455455
Q ss_pred HHHHHhCcch-HHHHHHHHHHHHHHHHHHHhcCCCeEEcCCC-Ccc--eEEEecCC-----HHHHHHHHHHcCceeeeec
Q 001989 433 MYAVYHGPEG-LKTIAQRVHGLAGTFALGLKKLGTVEVQGLP-FFD--TVKVKCAD-----AHAIASAAYKIEMNLRVVD 503 (985)
Q Consensus 433 ~~l~~~g~~G-l~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~-~~~--~~~~~~~~-----~~~v~~~L~~~GI~~~~~~ 503 (985)
+ ..+..+| +++..++..++.+++++.|+++| ++++.++ ..+ .+.+..+. ..++.++|.++||.+....
T Consensus 248 l--~~~~~~g~~~~~~~~~~~~~~~~~~~L~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~i~~~~ 324 (355)
T TIGR03301 248 L--EELEAEGGVPARIARYRRNRELLVDGLRALG-FQPLLPERWQSPIIVSFLYPDDPDFDFDDFYQELKERGFVIYPGK 324 (355)
T ss_pred H--HHHHHcccHHHHHHHHHHHHHHHHHHHHHcC-CeeecCCCCCCCcEEEEECCCCCcchHHHHHHHHHHCCEEEECCc
Confidence 4 4444555 88899999999999999999987 8865322 111 23454442 4689999999999885532
Q ss_pred ---CCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 504 ---SNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 504 ---~~~lris~t~~~t~edId~li~aL~~ 529 (985)
.+.+|++++.++|++|+++++++|+.
T Consensus 325 ~~~~~~iRis~~~~~~~~~i~~~~~~l~~ 353 (355)
T TIGR03301 325 LTLADTFRIGTIGEIDAADIERLLEAIKD 353 (355)
T ss_pred cccccEEEEecCCCCCHHHHHHHHHHHHh
Confidence 26899999999999999999999974
|
This family includes a number of 2-aminoethylphosphonate aminotransferases, some of which are indicated to operate in the catabolism of 2-aminoethylphosphonate (AEP) and others which are involved in the biosynthesis of the same compound. The catabolic enzyme (PhnW, ) is known to use pyruvate:alanine as the transfer partner and is modeled by the equivalog-level alignment (TIGR02326). The PhnW family is apparently a branch of a larger tree including genes (AepZ) adjacent to others responsible for the biosynthesis of phosphonoacetaldehyde. The identity of the transfer partner is unknown for these enzymes and considering the reversed flux compared to PhnW, it may very well be different. |
| >TIGR03531 selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium transferase | Back alignment and domain information |
|---|
Probab=99.84 E-value=5.9e-19 Score=203.26 Aligned_cols=360 Identities=16% Similarity=0.135 Sum_probs=227.7
Q ss_pred CCccccCCCCHHHHHHHHHHHhccccCcccccccccccccCCCccccccc---ccccccc---------ccCCCCchhhh
Q 001989 560 THPVFNKYHTEHELLRYIHLLQSKELSLCHSMIPLGSCTMKLNATTEMMP---VTWPSFA---------NIHPFAPADQA 627 (985)
Q Consensus 560 ~~p~~~~~~se~e~~~~l~~l~~~~~~~~~~~~~lG~~t~~~~~~~~~~~---~~~~~f~---------~~~p~~p~e~~ 627 (985)
.+| +.|+++.+|...|.+|+..|..-..+.+..| ...-... +.+.+|. ++.-.|| +.
T Consensus 29 ~~p--~~g~~~~~i~~~l~~l~~~~~~~~~~~~~~g-------ere~rv~~~~~~~~~~~~~hgigr~~~l~~~q~-ka- 97 (444)
T TIGR03531 29 KIP--EEGWDDETIELFLHELSVMDTNNFPNNVGVG-------EREGRVFSKLVARRHYRFCHGIGRSGDLVAPQP-KA- 97 (444)
T ss_pred cCC--ccCCCHHHHHHHHHHHhcCCcCCCccccCcC-------cccceeechhhhhcccceecCCCCcccccccCc-cc-
Confidence 568 6999999999999999998844222222222 1111111 1111221 1223444 22
Q ss_pred hh---HHHHHHHHHHHHHHHhCCCc--cceecCcHH-HHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCC
Q 001989 628 QG---YQEMFNNLGEWLCTITGFDS--FSLQPNAGA-AGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCG 701 (985)
Q Consensus 628 ~G---~~~~~~e~~~~la~l~G~~~--~~~~~~sGa-~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G 701 (985)
.| ...+..++++++++++|.+. ..+.+++|+ .+...++.+++. ++ .++++||++...|.+..+++...|
T Consensus 98 ~gss~~~~l~~~~e~~~~~~~G~~~~~~a~~v~~~Tg~al~laL~alr~----~~-~~gd~VI~p~~th~S~~kAi~~~G 172 (444)
T TIGR03531 98 AGSSLLYKLTNKLVKDFLKLLGLRSIKSAFVVPLATGMSLSLCLSALRH----KR-PKAKYVIWPRIDQKSCIKAISTAG 172 (444)
T ss_pred cCccHHHHHHHHHHHHHHHHcCCCCCCEEEEECCHHHHHHHHHHHHcCC----cC-CCCCEEEEECcChHHHHHHHHHcC
Confidence 23 66788899999999999983 234445555 333333333321 11 146889999888888888899999
Q ss_pred cEEEEEcC---CCCCCCCHHHHHHHHHhcCCCEEEEEEEcCCCc--cccccCHHHHHHHHHHcCCEEEEEccccccccCC
Q 001989 702 MKIVSVGT---DAKGNINIEELRKAAEANRDNLSTLMVTYPSTH--GVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGL 776 (985)
Q Consensus 702 ~~vv~v~~---d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~pn~~--G~i~~di~eI~~la~~~galliVD~a~~~~~~~l 776 (985)
++++.+++ ++++.+|+++|+++|+...+++.++++.+|+++ |..+ |+++|+++|+++|+++|+|+|+......+
T Consensus 173 ~~pv~Vd~~~d~~~~~iD~e~Le~aIt~~~~kai~~Vv~Tp~t~~~g~~d-dL~eIa~la~k~gI~lIvDaAyg~~~~~~ 251 (444)
T TIGR03531 173 FEPRVIETVLDGDELTTDVEDIERAIEEIGPDNILCVLSTTSCFAPRSPD-DIEEIAKICANYDIPHIVNNAYGLQSNKY 251 (444)
T ss_pred CeEEEeeeeecCcCCCcCHHHHHHHHHhccCCCEEEEEEcCCcCCCcchh-CHHHHHHHHHHcCCEEEEECcCcCcChhh
Confidence 99999995 345899999999999832225667777777654 4666 99999999999999999999985311111
Q ss_pred C---CC-CccC-CcEEEeCCcccccccCCCCCCceEEEEEc-ccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhh
Q 001989 777 T---SP-GYIG-ADVCHLNLHKTFCIPHGGGGPGMGPIGVK-KHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSA 850 (985)
Q Consensus 777 ~---~p-g~~g-~Di~~~s~hK~l~~p~g~GGPg~G~i~~~-~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~ 850 (985)
. .. ...| +|++++++||+|.+|.+ +|+++++ +++.+.+.....+ ....
T Consensus 252 ~~~~~~g~~~Grad~vv~s~hK~l~~pg~-----Gg~I~~~d~el~~~i~~~y~g---------------~~~~------ 305 (444)
T TIGR03531 252 MELINKAIKVGRVDAVVSSTDKNFMVPVG-----GAIIYSFDENFIQEISKSYPG---------------RASA------ 305 (444)
T ss_pred hhhhhccccccCCCeEEEeCccCCCCCCC-----EEEEEECCHHHHHHHHHhccC---------------CCCC------
Confidence 0 01 1233 79999999999987621 4566664 4444433211000 0011
Q ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc-----cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHH
Q 001989 851 LILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK-----HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAK 925 (985)
Q Consensus 851 ~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~-----g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~ 925 (985)
.....+|+.+..+|.+|++++.++..++++++.++|++ +..++ ..+..+.. +.+.+..+ .+.+...+..
T Consensus 306 s~~~~~~~~ll~~G~~g~~~li~~~~~~a~~l~~~L~~l~~~~~~~~~-~~~~n~is--~~~~~~~~---~~~~~~~~g~ 379 (444)
T TIGR03531 306 SPSLDVLITLLSLGSKGYLELLKERKEMYKYLKELLQKLAERHGERLL-DTPENPIS--SAMTLSTL---KGKDPTMLGS 379 (444)
T ss_pred hHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcEee-cCCCCcee--EEEecccc---cccCHHHHHH
Confidence 12345788889999999999999999999999999975 23332 22222222 33444322 1456788888
Q ss_pred HHHHCCCccCC-----C-------C---CCC------CCEEEEeccCCCCHHHHHHHHccCChhHH
Q 001989 926 RLMDYGFHGPT-----M-------S---WPV------PGTLMIEPTESESKSWTGIVMLSSPSEKK 970 (985)
Q Consensus 926 ~L~~~Gi~~~~-----~-------~---~p~------~~~lris~t~~~t~eeId~~~~~~~l~~~ 970 (985)
.|..+++-... - . |+. -..+-++...-.+++|||. |++.|+++
T Consensus 380 ~l~~~~v~g~r~v~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~g~~~~~~~~--~~~~l~~~ 443 (444)
T TIGR03531 380 MLYSRRVTGPRVVTNGDSKTVGGCEFKGYGSHTSNYPCPYITAAAAIGMTKEDVDT--FVSRLEKS 443 (444)
T ss_pred HHHhCCCCCceeecCCCceEECCEEeecccccccCCCchhHHHHHHhCCcHHHHHH--HHHHHhhc
Confidence 99888764211 0 0 110 1244555556789999999 77887765
|
In the archaea and eukaryotes, the conversion of the mischarged serine to selenocysteine (Sec) on its tRNA is accomplished in two steps. This enzyme, O-phosphoseryl-tRNA(Sec) selenium transferase, acts second, after a phosphophorylation step catalyzed by a homolog of the bacterial SelA protein. |
| >PRK13479 2-aminoethylphosphonate--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.1e-18 Score=200.42 Aligned_cols=320 Identities=14% Similarity=0.144 Sum_probs=214.0
Q ss_pred ecCCCCCCCCCcHHHHHHHHhCCccccccCCChhhHhhhHHHHHHHHHHHHHHhcCCCC--cceeeccchHHHHHHHHHH
Q 001989 170 FIGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPM--SNASLLDEGTAAAEAMAMC 247 (985)
Q Consensus 170 ~lG~g~y~~~~p~~v~~~i~~~~~~~t~~~pyq~e~sqg~l~~i~e~q~~ia~L~g~~~--~~~sl~~~~ta~~ea~~~a 247 (985)
.++.| |..+++.+.+++. ++ | ..+.++ ..+.+.++++.+++++|.+. ..+.++.+||.++++++.+
T Consensus 8 ~~~pg--P~~~~~~~~~a~~-~~-~----~~~~~~----~~~~~~~~~~~l~~l~~~~~~~~~i~~~~~gt~~l~~~~~~ 75 (368)
T PRK13479 8 LLTPG--PLTTSRTVREAML-RD-W----GSWDDD----FNALTASVRAKLVAIATGEEGYTCVPLQGSGTFSVEAAIGS 75 (368)
T ss_pred eecCC--CCCCCHHHHHHhC-CC-C----CCCChH----HHHHHHHHHHHHHHHhCCCCCceEEEEcCCcHHHHHHHHHh
Confidence 34666 4457777764433 32 3 122222 22568889999999999965 3477889999988888876
Q ss_pred hhhhcCCCCEEEEcCC-CChhHHHHHHHhhcCCCeEEEEeCc--------hhhhc-cC--CCEeEEEEEcC-CCCeeecc
Q 001989 248 NNIQKGKKKTFIIASN-CHPQTIDICITRADGFDIKVVVSDL--------KDIDY-KS--GDVCGVLVQYP-GTEGEVLD 314 (985)
Q Consensus 248 ~~~~~~~g~~Vlv~~~-~H~s~~~~~~~~a~~~gi~v~~v~~--------~~l~~-l~--~~t~~V~v~~p-n~~G~v~d 314 (985)
+. . ++++|++... .++.. +..+++..|++++.++. +++++ +. +++++|++.+| |.+|.+.|
T Consensus 76 l~-~--~~~~vlv~~~~~~~~~---~~~~~~~~g~~~~~i~~~~~~~~d~~~l~~~l~~~~~~~~v~~~~~~~~tG~~~~ 149 (368)
T PRK13479 76 LV-P--RDGKVLVPDNGAYGAR---IAQIAEYLGIAHVVLDTGEDEPPDAAEVEAALAADPRITHVALVHCETTTGILNP 149 (368)
T ss_pred cc-C--CCCeEEEEeCCchHHH---HHHHHHHcCCcEEEEECCCCCCCCHHHHHHHHHhCCCCcEEEEEcccCccccccC
Confidence 53 2 6777777654 44433 22334567888887754 34444 43 45678888888 67999999
Q ss_pred HHHHHHHHHhCCcEEEEEecCccccCC-CCCCcccceEEEecC-ccccccCCCCCCcEEEEEEchhhHhcCCCceeeeee
Q 001989 315 YGDFIKNAHANGVKVVMATDLLALTIL-KPPGELGADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSI 392 (985)
Q Consensus 315 i~~I~~~a~~~galliV~a~~~~lg~l-~~~~~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~ 392 (985)
+++|+++||++|++++|| ..+++|.. .+..++++|++++++ |+|+ |+||+||+++++++++.+.....
T Consensus 150 ~~~i~~l~~~~~~~livD-a~~~~g~~~~~~~~~~~d~~v~s~~K~l~-----g~~G~G~l~~~~~~~~~~~~~~~---- 219 (368)
T PRK13479 150 LDEIAAVAKRHGKRLIVD-AMSSFGAIPIDIAELGIDALISSANKCIE-----GVPGFGFVIARRSELEACKGNSR---- 219 (368)
T ss_pred HHHHHHHHHHcCCEEEEE-cccccCCccccccccCceEEEecCccccc-----cCCCceEEEECHHHHHHhhcCCC----
Confidence 999999999999999996 34566643 234678999999998 6674 44678999999998877753221
Q ss_pred cCCCCcceeeecccccccccccc---cCCCccchhHHHHHHHHHHHHHhCc-chHHHHHHHHHHHHHHHHHHHhcCCCeE
Q 001989 393 DSSGKPALRVAMQTREQHIRRDK---ATSNICTAQALLANMAAMYAVYHGP-EGLKTIAQRVHGLAGTFALGLKKLGTVE 468 (985)
Q Consensus 393 d~~g~~~~~l~l~tre~~irre~---atsni~t~~~l~a~~aa~~l~~~g~-~Gl~~i~~~~~~~a~~l~~~L~~~g~~~ 468 (985)
.+.+++........+.. -|.|+ ..++++.+++ ..+.. .|++++.+++.++++++++.|+++| ++
T Consensus 220 ------~~~~~~~~~~~~~~~~~~~~~t~~~---~~~~~l~~al--~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~ 287 (368)
T PRK13479 220 ------SLSLDLYDQWAYMEKTGQWRFTPPT---HVVAAFYQAL--LELEEEGGVPARGARYANNQRTLVAGMRALG-FE 287 (368)
T ss_pred ------CeeecHHHHHhhhcccCCCCCCCcH---HHHHHHHHHH--HHHHHhhCHHHHHHHHHHHHHHHHHHHHHcC-Cc
Confidence 12222111000000111 13333 4455555555 33323 3588889999999999999999997 88
Q ss_pred EcCCC--Ccc-eEEEecCC-----HHHHHHHHHHcCceeeeec---CCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 469 VQGLP--FFD-TVKVKCAD-----AHAIASAAYKIEMNLRVVD---SNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 469 ~~~~~--~~~-~~~~~~~~-----~~~v~~~L~~~GI~~~~~~---~~~lris~t~~~t~edId~li~aL~~ 529 (985)
++.++ ..+ .+.|..+. ..++.++|.++||.++... .+.+|++.+-++|++|+++++++|+.
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~gi~v~~g~~~~~~~iRis~~~~~t~edi~~~l~~L~~ 359 (368)
T PRK13479 288 PLLDAEIQSPIIVTFHAPADPAYDFKEFYERLKEQGFVIYPGKLTQVDTFRIGCIGDVDAADIRRLVAAIAE 359 (368)
T ss_pred ccCCchhcCceEEEEECCCCCCcCHHHHHHHHHHCCEEEecCCCCCCCEEEEecCCCCCHHHHHHHHHHHHH
Confidence 76322 111 23444331 5789999999999886421 35899998889999999999999974
|
|
| >PRK13034 serine hydroxymethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.5e-19 Score=206.18 Aligned_cols=299 Identities=20% Similarity=0.243 Sum_probs=193.9
Q ss_pred HHHHHHHH----HHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHH-HHH--HCCcEE
Q 001989 632 EMFNNLGE----WLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPA-TAA--MCGMKI 704 (985)
Q Consensus 632 ~~~~e~~~----~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~-~a~--~~G~~v 704 (985)
+.+.++++ .+++++|.+.+.+.++||+.|+++++.++. +++|+|++++..|+.+.. .++ ..+...
T Consensus 70 ~~~~~lE~~~~~~la~l~g~~~alv~~~SG~~A~~~~l~al~--------~~GD~Vl~~~~~~~~~~~~g~~~~~~~~~~ 141 (416)
T PRK13034 70 EFVDEVEALAIERAKQLFGCDYANVQPHSGSQANGAVYLALL--------KPGDTILGMSLSHGGHLTHGAKVSLSGKWY 141 (416)
T ss_pred hHHHHHHHHHHHHHHHHhCCCceEEecCCcHHHHHHHHHHhc--------CCCCEEEEcCccceeeeecCCcceecccee
Confidence 44556666 999999998876777899988877666542 478999999888876311 111 122222
Q ss_pred --EEEcCCC-CCCCCHHHHHHHHHhcCCCEEEEEEEcCCCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCC-CC
Q 001989 705 --VSVGTDA-KGNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTS-PG 780 (985)
Q Consensus 705 --v~v~~d~-~g~iD~e~L~~~i~~~~~~t~~Vvv~~pn~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~-pg 780 (985)
+.++++. ++.+|+++++++++. .++++|+++.+. +|... |+++|.++|+++|++++||++|..+..+.+. ++
T Consensus 142 ~~~~~~~~~~~~~~d~~~le~~l~~--~~~klVi~~~~~-~g~~~-dl~~l~~la~~~g~~livD~Aha~G~~~~g~~~~ 217 (416)
T PRK13034 142 NAVQYGVDRLTGLIDYDEVEELAKE--HKPKLIIAGFSA-YPREL-DFARFREIADEVGALLMVDMAHIAGLVAAGEHPN 217 (416)
T ss_pred eeEEcccccccCCcCHHHHHHHHhh--cCCeEEEECCCc-ccccc-CHHHHHHHHHHcCCEEEEeCcccccCcccCCCCC
Confidence 3455543 467999999999863 357788775543 57766 8999999999999999999999755433211 11
Q ss_pred c-cCCcEEEeCCcccccccCCCCCCceEEEEEccc-ccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHH
Q 001989 781 Y-IGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKH-LAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYT 858 (985)
Q Consensus 781 ~-~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~-l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a 858 (985)
. .++|++++++||+++ ||.+|+++++++ +...+....+. .+.++.. .+..++.+.+
T Consensus 218 ~~~~~Di~~~s~~K~l~------g~~GG~v~~~~~~~~~~~~~~~~~---------------~~~~~~~-~~~~aa~~~a 275 (416)
T PRK13034 218 PFPHAHVVTTTTHKTLR------GPRGGMILTNDEEIAKKINSAVFP---------------GLQGGPL-MHVIAAKAVA 275 (416)
T ss_pred CCCCceEEEEeCcccCC------CCCCeEEEECcHHHHHHHHhhcCC---------------cccCCcc-HHHHHHHHHH
Confidence 1 258999999999984 455577766643 33322111110 0000000 1112222333
Q ss_pred HHHHhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCC-
Q 001989 859 YIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPT- 936 (985)
Q Consensus 859 ~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~- 936 (985)
.+..+.. +..++.++..+++++|+++|++ |+++..++ ...+.+.+.+.. .+.....+.++|.++||+++.
T Consensus 276 l~~~~~~-~~~~~~~~l~~~a~~l~~~L~~~G~~~~~~~---~~t~i~~v~~~~----~~~~~~~~~~~L~~~GI~v~~~ 347 (416)
T PRK13034 276 FGEALQP-EFKTYAKQVIANAQALAEVLKERGYDLVSGG---TDNHLLLVDLRP----KGLSGKDAEQALERAGITVNKN 347 (416)
T ss_pred HHHHhCh-hHHHHHHHHHHHHHHHHHHHHHcCCEeccCC---CCCcEEEEEcCC----CCCCHHHHHHHHHhCCcEEecc
Confidence 3444332 3345567889999999999986 66654211 123345565541 245677888999999999864
Q ss_pred -----CCCC-CCCEEEEeccC----CCCHHHHHHHHccCChhHHHHhh
Q 001989 937 -----MSWP-VPGTLMIEPTE----SESKSWTGIVMLSSPSEKKLHRL 974 (985)
Q Consensus 937 -----~~~p-~~~~lris~t~----~~t~eeId~~~~~~~l~~~~~~~ 974 (985)
..+| ++..||++++. .++++||++ +++.|++++...
T Consensus 348 ~~p~~~~~p~~~~~lR~~~~~~t~~~~~~~di~~--l~~~l~~~~~~~ 393 (416)
T PRK13034 348 TVPGDTESPFVTSGIRIGTPAGTTRGFGEAEFRE--IANWILDVLDDL 393 (416)
T ss_pred CCCCCCcCCCCCCeeEeCcHHHHhCCCCHHHHHH--HHHHHHHHHhcC
Confidence 2334 45789999988 677999999 888888887643
|
|
| >PRK03080 phosphoserine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.1e-19 Score=206.75 Aligned_cols=310 Identities=14% Similarity=0.072 Sum_probs=195.2
Q ss_pred HHHHHHHHHHHHHHHhCCCc---cceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHH--HHHCCc-E
Q 001989 630 YQEMFNNLGEWLCTITGFDS---FSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPAT--AAMCGM-K 703 (985)
Q Consensus 630 ~~~~~~e~~~~la~l~G~~~---~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~--a~~~G~-~ 703 (985)
+.+++++.++.+++++|.+. +.++.++|+.++++++..+ . ..++..+++ ...|+..... ++..|+ +
T Consensus 46 f~~~~~~~r~~l~~l~~~~~~~~v~~~~gs~T~~~~~~~~~l---~----~~~~~~vi~-~g~f~~~~~~~~~~~~g~~~ 117 (378)
T PRK03080 46 VKALLKRVIEGTRELLSLPEGYEVGIVPGSDTGAWEMALWSL---L----GARRVDHLA-WESFGSKWATDVVKQLKLED 117 (378)
T ss_pred HHHHHHHHHHHHHHHhCCCCCceEEEECCchHHHHHHHHHhc---C----CCCcceEEE-eCHHHHHHHHHHHhhcCCCC
Confidence 34677899999999999853 2234457887776554432 1 012444554 4566654332 356799 9
Q ss_pred EEEEcCCCCCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCcc
Q 001989 704 IVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYI 782 (985)
Q Consensus 704 vv~v~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~ 782 (985)
++.++.++++.+|++++ + . ++.|.+++. +.+|++. |+++|++ |++|++++||++|+.+...+ +..
T Consensus 118 v~~~~~~~g~~~d~~~i----~---~-~~~V~~~h~~t~tG~~~-pi~~I~~--~~~g~~~vVDa~qs~G~~pi-dv~-- 183 (378)
T PRK03080 118 PRVLEADYGSLPDLSAV----D---F-DRDVVFTWNGTTTGVRV-PVARWIG--ADREGLTICDATSAAFALPL-DWS-- 183 (378)
T ss_pred ceEeccCCCCCCCHhhc----C---C-CCCEEEEecCCccceec-cchhhcc--ccCCCeEEEecccccccCCC-CHH--
Confidence 99999887778888763 2 2 345777775 5799999 8999999 88999999999997655443 223
Q ss_pred CCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCC----CC------CCCCCCCCCCCCCCcchhhhHH
Q 001989 783 GADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTG----GI------PAPEKSQPLGTIAAAPWGSALI 852 (985)
Q Consensus 783 g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~----~~------~~~~~~~~~~~i~s~~~g~~~~ 852 (985)
.+|++++++||||+ |.||+|++++++++.+.+.+...++.. +. .....+.++.++.. ...
T Consensus 184 ~iD~~~~s~~K~l~-----~P~G~g~l~v~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~tp~-----i~~ 253 (378)
T PRK03080 184 KLDVYTFSWQKVLG-----GEGGHGMAILSPRAVERLESYTPARPIPKFFRLTKGGKAIENSFKGQTINTPS-----MLT 253 (378)
T ss_pred HCcEEEEehhhhCC-----CCCceEEEEECHHHHHhhhcccCCCCCchhheeccchHHhhhhhcCCcccCch-----HHH
Confidence 27999999999995 336999999998776554332222110 00 00001122222221 111
Q ss_pred HHHHHHHHHHhcHH-HHHHHHHHHHHHHHHHHHHhhc-c-CCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHH
Q 001989 853 LPISYTYIAMMGSK-GLTEASKIAILNANYMAKRLEK-H-YPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMD 929 (985)
Q Consensus 853 ~~~a~a~l~~lg~e-Gl~~~~~~~~~~a~~l~~~L~~-g-~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~ 929 (985)
+.+..++|+.+..+ |+.++.++..+++++++++|++ + +.+....+.......+.+.++.. +.+. ..++..+|.+
T Consensus 254 i~~l~~al~~l~~~gG~e~i~~r~~~l~~~l~~~l~~~~~~~~~~~~~~~~s~~i~~~~~~~~--~~~~-~~~~~~~l~~ 330 (378)
T PRK03080 254 VEDYLDQLDWANSIGGLDALIARTAANASVLYDWAEKTPWATPLVADPATRSNTSVTLDFVDA--QAAV-DAAAVAKLLR 330 (378)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhCCCcccccCCccccCccEEEEEcCCc--hHHH-HHHHHHHHHH
Confidence 22223455666565 7888888899999999999986 2 33321111111111233444310 0012 2456667777
Q ss_pred CCCccCCCCCC-CCCEEEEeccCCCCHHHHHHHHccCChhHHHHhhcc
Q 001989 930 YGFHGPTMSWP-VPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRLKM 976 (985)
Q Consensus 930 ~Gi~~~~~~~p-~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~~~ 976 (985)
+|+.+..-.+. ..+.+|+|++.++|++|||+ +++.|+++++.+|+
T Consensus 331 ~~i~v~~g~~~~~~~~vRis~~~~~t~~di~~--l~~al~~~~~~~~~ 376 (378)
T PRK03080 331 ENGAVDIEPYRDAPNGLRIWCGPTVEPADVEA--LTPWLDWAFERLKA 376 (378)
T ss_pred cCCeeccccccCCCCcEEEecCCCCCHHHHHH--HHHHHHHHHHHHhh
Confidence 78776421111 24789999999999999999 88999999998876
|
|
| >PTZ00094 serine hydroxymethyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.6e-19 Score=208.61 Aligned_cols=284 Identities=12% Similarity=0.077 Sum_probs=192.5
Q ss_pred HHHHHHH-HHHHHHHhcCCCCcceeec---cchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhc------C
Q 001989 209 RLESLLN-FQTMIADLTGLPMSNASLL---DEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRAD------G 278 (985)
Q Consensus 209 ~l~~i~e-~q~~ia~L~g~~~~~~sl~---~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~------~ 278 (985)
..+.+.+ +++.+++++|++.+++.+. .+||.+..+++.++ + ++||+|++++.+|++....+..+.+ .
T Consensus 77 ~~~~iE~~ar~~~a~lf~a~~~~~~~~~~~~sgt~an~~v~~al-~--~~gd~Ii~~~~ehg~~l~~~~~l~~~~~~~~~ 153 (452)
T PTZ00094 77 VVDKIENLCQKRALEAFGLDPEEWGVNVQPYSGSPANFAVYTAL-L--QPHDRIMGLDLPSGGHLTHGFYTAKKKVSATS 153 (452)
T ss_pred HHHHHHHHHHHHHHHHhCCCcccceeecCCCchHHHHHHHHHHh-c--CCCCEEEecccccCCcccccccccccccccce
Confidence 3456663 7889999999987664333 57777666666665 3 3789999999999998877643221 1
Q ss_pred CCeEEEE--------eCchhhhc-cC-CCEeEEEEEcCCCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCC-----C
Q 001989 279 FDIKVVV--------SDLKDIDY-KS-GDVCGVLVQYPGTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILK-----P 343 (985)
Q Consensus 279 ~gi~v~~--------v~~~~l~~-l~-~~t~~V~v~~pn~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~-----~ 343 (985)
.++++.. +|+++|++ +. .+++.|++.++ .+|.+.|+++|+++||++|++++||+ .+++|.+. .
T Consensus 154 ~~~~~~~~~~~~~g~id~~~L~~~l~~~~~~lvi~~~s-~~g~~~di~~I~~i~~~~ga~l~vDa-aq~~G~i~~~~~~~ 231 (452)
T PTZ00094 154 IYFESLPYQVNEKGLIDYDKLEELAKAFRPKLIIAGAS-AYPRDIDYKRFREICDSVGAYLMADI-AHTSGLVAAGVLPS 231 (452)
T ss_pred eeeeeeecccCCCCCcCHHHHHHHHHHhCCCEEEEeCC-CCCCccCHHHHHHHHHHcCCEEEEec-cchhccccCCCCCC
Confidence 1233333 24456666 53 24566666544 59999999999999999999999953 45666552 1
Q ss_pred CCcccceEEEecC-ccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccc
Q 001989 344 PGELGADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICT 422 (985)
Q Consensus 344 ~~~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t 422 (985)
+. .|+|++++|+ |+|++| ..|++++++++.+.+..++ + .. .+ + . ..|+.+.
T Consensus 232 ~~-~~~D~l~~S~hK~l~GP------~Gg~l~~~~~~~~~l~~~~-----~---~~--~~---p-----~-~~G~~~~-- 283 (452)
T PTZ00094 232 PF-PYADVVTTTTHKSLRGP------RSGLIFYRKKVKPDIENKI-----N---EA--VF---P-----G-LQGGPHN-- 283 (452)
T ss_pred CC-CCCcEEEcCCccCCCCC------CceEEEEecccchHHHHhh-----c---cc--cC---C-----C-CCCCchH--
Confidence 22 3899999999 667555 3467888776544332111 0 00 00 0 0 1233333
Q ss_pred hhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCC---CCcceEEEecCC--HHHHHHHHHHcCc
Q 001989 423 AQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGL---PFFDTVKVKCAD--AHAIASAAYKIEM 497 (985)
Q Consensus 423 ~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~---~~~~~~~~~~~~--~~~v~~~L~~~GI 497 (985)
..+.++.+++ .++...+.+++++++.+++++|++.|++.| +++... .....+.+..++ ..++.+.|.++||
T Consensus 284 -~~iaal~~al--~~~~~~~~~~~~~~i~~l~~~l~~~L~~~g-~~v~~~~~~~~~~~v~~~~~~~~~~~~~~~L~~~gI 359 (452)
T PTZ00094 284 -HQIAAIAVQL--KEVQSPEWKEYAKQVLKNAKALAAALEKRG-YDLVTGGTDNHLVLVDLRPFGITGSKMEKLLDAVNI 359 (452)
T ss_pred -HHHHHHHHHH--HHHhChhHHHHHHHHHHHHHHHHHHHHhCC-cEEecCCCCCceEeecCCcCCCCHHHHHHHHHHCCc
Confidence 3455666665 555566888999999999999999998887 888732 222234444444 7788999988899
Q ss_pred eeee---------ecCCeEEEEeccCCC----HHHHHHHHHHHhC
Q 001989 498 NLRV---------VDSNTVTASFDETTT----LEDVDKLFIVFAG 529 (985)
Q Consensus 498 ~~~~---------~~~~~lris~t~~~t----~edId~li~aL~~ 529 (985)
.+.. ..++.+|++++++|| ++||++++++|..
T Consensus 360 ~vs~~~~p~~~~~~~~~~vRis~~~~tt~g~~~~di~~l~~~l~~ 404 (452)
T PTZ00094 360 SVNKNTIPGDKSALNPSGVRLGTPALTTRGAKEKDFKFVADFLDR 404 (452)
T ss_pred EEecccCCCCCcCCCCCeEEECCHHHHhCCCCHHHHHHHHHHHHH
Confidence 8842 124789999999987 9999999999974
|
|
| >TIGR03235 DNA_S_dndA cysteine desulfurase DndA | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.4e-18 Score=198.53 Aligned_cols=271 Identities=13% Similarity=0.134 Sum_probs=181.6
Q ss_pred HHHHHHHHHHHHHHHhCCCccce-ecCcHHHHHHHHHHHHHHHHHhcCCCCC-CEEEEcCCCCcccHHH---HHHCCcEE
Q 001989 630 YQEMFNNLGEWLCTITGFDSFSL-QPNAGAAGEYAGLMVIRAYHKARGDHHR-NVCIIPVSAHGTNPAT---AAMCGMKI 704 (985)
Q Consensus 630 ~~~~~~e~~~~la~l~G~~~~~~-~~~sGa~a~~a~l~air~~~~~~g~~~~-~~IIv~~~~Hg~~~~~---a~~~G~~v 704 (985)
..+.++++++++++++|.+...+ +.+++++++..++.++... +..++ ++|+++...|+++... ++..|+++
T Consensus 40 ~~~~~~~~r~~la~~~g~~~~~v~~~~g~t~a~~~~l~~l~~~----~~~~g~~~vi~~~~~~~s~~~~~~~~~~~G~~v 115 (353)
T TIGR03235 40 AKKAVERARKQVAEALGADTEEVIFTSGATESNNLAILGLARA----GEQKGKKHIITSAIEHPAVLEPIRALERNGFTV 115 (353)
T ss_pred HHHHHHHHHHHHHHHhCCCCCeEEEeCCHHHHHHHHHHHHHHh----cccCCCCeeeEcccccHHHHHHHHHHHhcCCEE
Confidence 44667899999999999986544 4455566665555444321 11233 6788888888877554 34579999
Q ss_pred EEEcCCCCCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCccC
Q 001989 705 VSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIG 783 (985)
Q Consensus 705 v~v~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~g 783 (985)
+.++.++++.+|+++|+++++ +++++|+++++ |.+|.+. |+++|+++|+++|++++||++|..+...+ +..+++
T Consensus 116 ~~v~~~~~~~~d~~~l~~~l~---~~~~lv~~~~~~n~tG~~~-~~~~I~~l~~~~~~~~ivD~a~~~g~~~~-~~~~~~ 190 (353)
T TIGR03235 116 TYLPVDESGRIDVDELADAIR---PDTLLVSIMHVNNETGSIQ-PIREIAEVLEAHEAFFHVDAAQVVGKITV-DLSADR 190 (353)
T ss_pred EEEccCCCCcCCHHHHHHhCC---CCCEEEEEEcccCCceecc-CHHHHHHHHHHcCCEEEEEchhhcCCccc-cccccC
Confidence 999998889999999999997 78899999998 4699998 89999999999999999999986554433 345678
Q ss_pred CcEEEeCCcccccccCCCCCCceEEEEEcccccCc--CCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHH
Q 001989 784 ADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPF--LPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIA 861 (985)
Q Consensus 784 ~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~--lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~ 861 (985)
+|++++++||++ |.||+|+++++++.... +.+..++... .++.+.++.++. ....+. +.++
T Consensus 191 ~D~~~~s~~K~~------gp~g~g~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~gt~~~~-----~~~al~---~al~ 253 (353)
T TIGR03235 191 IDLISCSGHKIY------GPKGIGALVIRKRGKPKAPLKPIMFGGGQ---ERGLRPGTLPVH-----LIVGMG---EAAE 253 (353)
T ss_pred CCEEEeehhhcC------CCCceEEEEEccCcccccccCceeeCCCC---cCccccCCCChH-----HHHHHH---HHHH
Confidence 999999999986 33479999999875322 2222222110 011122233322 111122 2333
Q ss_pred HhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccC
Q 001989 862 MMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGP 935 (985)
Q Consensus 862 ~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~ 935 (985)
.+ .+|.+++.++..+++++++++|++ ++++.. .+.......+.+.++ +.+.+++.+.|.+ ||.+.
T Consensus 254 ~~-~~~~~~~~~~~~~l~~~l~~~l~~~g~~~~~-~~~~~~~~i~~~~~~------~~~~~~v~~~L~~-~i~v~ 319 (353)
T TIGR03235 254 IA-RRNAQAWEVKLRAMRNQLRDALQTLGVKLNG-DPAETIPHILNFSID------GVNSEALIVNLRA-DAAVS 319 (353)
T ss_pred HH-HhhHHHHHHHHHHHHHHHHHHhccCCeEEeC-CcccccCCEEEEEeC------CcCHHHHHHHHhC-CeEEE
Confidence 33 246777778889999999999986 444432 111111222334433 5678899999965 77654
|
This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase. |
| >PLN02724 Molybdenum cofactor sulfurase | Back alignment and domain information |
|---|
Probab=99.83 E-value=4e-19 Score=221.92 Aligned_cols=320 Identities=12% Similarity=0.085 Sum_probs=202.8
Q ss_pred hhhHHHHHHHHHHHHHHHhCCCcc--ceecCcH-HHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHH---HHHC
Q 001989 627 AQGYQEMFNNLGEWLCTITGFDSF--SLQPNAG-AAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPAT---AAMC 700 (985)
Q Consensus 627 ~~G~~~~~~e~~~~la~l~G~~~~--~~~~~sG-a~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~---a~~~ 700 (985)
++-+.+.++++++.+++++|.+.. .+.+++| ++|+ .+++..+ ...++++||++...|.++... ++..
T Consensus 73 s~~~~~~~e~aR~~ia~~lga~~~~~~VvFtsnaT~al---nlva~~l----~~~~gd~Iv~t~~eH~svl~~~~~a~~~ 145 (805)
T PLN02724 73 SMRSSDTIESARQQVLEYFNAPPSDYACVFTSGATAAL---KLVGETF----PWSSESHFCYTLENHNSVLGIREYALEK 145 (805)
T ss_pred hhhHHHHHHHHHHHHHHHhCCCccceEEEEeCChHHHH---HHHHHHC----CCCCCCeEEEeeccccchHHHHHHHHHc
Confidence 445677899999999999999653 3344444 4433 3444433 124678999988888776533 3457
Q ss_pred CcEEEEEcCC--------CCCCCCH--HHHHHHHH----h---cCCCEEEEEEEcC-CCccccccCHHHHHHHHHHc---
Q 001989 701 GMKIVSVGTD--------AKGNINI--EELRKAAE----A---NRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDN--- 759 (985)
Q Consensus 701 G~~vv~v~~d--------~~g~iD~--e~L~~~i~----~---~~~~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~--- 759 (985)
|++++.++++ ..+.+|+ ++|++.++ . ..++|++|.+++. |.+|.+. |+++|.++++..
T Consensus 146 G~~v~~v~~~~~~~~~~~~~g~~~~~~~~l~~~~~~~l~~~~~~~~~t~LVa~~~vsN~tG~i~-pi~~i~~~~~~~~~~ 224 (805)
T PLN02724 146 GAAAIAVDIEEAANQPTNSQGSVVVKSRGLQRRNTSKLQKREDDGEAYNLFAFPSECNFSGAKF-PLDLVKLIKDNQHSN 224 (805)
T ss_pred CCeEEeccchhccccccccccccccchhhhhhhhhhhhccccccCCCcceEEEEccccCCCCcC-CHHHHHHHHHhcccc
Confidence 9999999886 3455554 66776642 0 1246788999885 6799999 899876555532
Q ss_pred ----C-CEEEEEccccccccCCCCCCccCCcEEEeCCcccccccCCCCCC-ceEEEEEcccccCcCCCCcccc-CC----
Q 001989 760 ----G-GQVYMDGANMNAQVGLTSPGYIGADVCHLNLHKTFCIPHGGGGP-GMGPIGVKKHLAPFLPSHPVVS-TG---- 828 (985)
Q Consensus 760 ----g-alliVD~a~~~~~~~l~~pg~~g~Di~~~s~hK~l~~p~g~GGP-g~G~i~~~~~l~~~lp~~~~g~-~~---- 828 (985)
| ++++||++|+.++..+ +..++++|++++|+|||| ||| |+|++++++++...+.+.++|+ +.
T Consensus 225 ~~~~g~~~v~vDaaQ~~g~~pi-Dv~~~~~Dfl~~S~HK~~------GgP~G~G~L~vr~~~~~~l~p~~~GGg~~~~~~ 297 (805)
T PLN02724 225 FSKSGRWMVLLDAAKGCGTSPP-DLSRYPADFVVVSFYKIF------GYPTGLGALLVRRDAAKLLKKKYFGGGTVAASI 297 (805)
T ss_pred cccCcceEEEeehhhhcCCCCC-ChhhcCCCEEEEecceec------cCCCCceEEEEehhhhhhhcCCccCCCceEEEe
Confidence 3 5799999998776654 456789999999999998 456 8999999987766555444443 21
Q ss_pred -C--C------CCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhccC------Cee
Q 001989 829 -G--I------PAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHY------PIL 893 (985)
Q Consensus 829 -~--~------~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~g~------~l~ 893 (985)
+ . ...+.+.+|.++.+ . .++.+|..++..+ |+.++.++...+++|+.++|++.. .+.
T Consensus 298 ~~~~~~~~~~~~~~rfE~GT~n~~~----i-~~l~aal~~l~~i---g~~~I~~~~~~L~~~l~~~L~~l~~~~g~~~v~ 369 (805)
T PLN02724 298 ADIDFVKRRERVEQRFEDGTISFLS----I-AALRHGFKLLNRL---TISAIAMHTWALTHYVANSLRNLKHGNGAPVCV 369 (805)
T ss_pred cccceeeccccHHHHhcCCCcchhH----H-HHHHHHHHHHHHh---ChHHHHHHHHHHHHHHHHHHHhccCCCCCeEEE
Confidence 0 0 00123445555432 2 2233444445444 556667788899999999998632 132
Q ss_pred ecCCC------CceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCC---CCCC------------------------
Q 001989 894 FRGVN------GTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPT---MSWP------------------------ 940 (985)
Q Consensus 894 ~~~~~------~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~---~~~p------------------------ 940 (985)
+.++. ......+.+.+.+. ....+...++.+.+.++||.+.+ |..+
T Consensus 370 iyg~~~~~~~~~~r~~ivsFnv~~~-~~~~v~~~~v~~l~~~~gI~vR~G~~Ca~~~~~~~lg~~~~~l~~~~~~~~~c~ 448 (805)
T PLN02724 370 LYGNHTFKLEFHIQGPIVTFNLKRA-DGSWVGHREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHKDLQANFEAGHVCW 448 (805)
T ss_pred EcCCCCCCCCcccccCEEEEEEEcC-CCCEeCHHHHHHHHHhcCcEEeeccccCchHHHHHcCCCHHHHHHHhhcCCccC
Confidence 22221 01122233343311 00013345566655677988642 1110
Q ss_pred ---------CCCEEEEeccCCCCHHHHHHHHccCChhHHHH
Q 001989 941 ---------VPGTLMIEPTESESKSWTGIVMLSSPSEKKLH 972 (985)
Q Consensus 941 ---------~~~~lris~t~~~t~eeId~~~~~~~l~~~~~ 972 (985)
..+++|+|+..++|.||||+ +++.|++.+-
T Consensus 449 ~~~~~~~~~~~G~vRvS~g~ynt~eDvd~--lv~~l~~~~~ 487 (805)
T PLN02724 449 DDQDVIHGRPTGAVRVSFGYMSTFEDCQK--FIDFIISSFV 487 (805)
T ss_pred chhheecCcccceEEEEcCccCCHHHHHH--HHHHHHHHhh
Confidence 02889999999999999999 7788888763
|
|
| >TIGR01822 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A ligase | Back alignment and domain information |
|---|
Probab=99.83 E-value=9.1e-19 Score=203.03 Aligned_cols=281 Identities=15% Similarity=0.170 Sum_probs=195.4
Q ss_pred HhhhHHHHHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEE
Q 001989 205 IAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVV 284 (985)
Q Consensus 205 ~sqg~l~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~ 284 (985)
...|+.+...++++.+|+++|.+. +.+++|++.+..+++.++ + ++||+|++++..|+++...++. ++..++.+.
T Consensus 77 ~~~G~~~~~~~le~~ia~~~g~~~--~ii~~~~~~a~~~~~~~l-~--~~gd~vi~~~~~~~s~~~~~~~-~~~~~~~~~ 150 (393)
T TIGR01822 77 FICGTQDIHKELEAKIAAFLGTED--TILYASCFDANGGLFETL-L--GAEDAIISDALNHASIIDGVRL-CKAKRYRYA 150 (393)
T ss_pred cccCChHHHHHHHHHHHHHhCCCc--EEEECchHHHHHHHHHHh-C--CCCCEEEEeccccHHHHHHHHh-cCCceEEeC
Confidence 345888888999999999999863 677788887766665554 2 3899999999999999988754 444455555
Q ss_pred EeCchhhhc-cCC------CEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCCCCC---------cc
Q 001989 285 VSDLKDIDY-KSG------DVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKPPG---------EL 347 (985)
Q Consensus 285 ~v~~~~l~~-l~~------~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~~~~---------~~ 347 (985)
..|++++++ +.+ +|++|++.++ |++|.+.|+++|+++||++|+++++| +.+++|.+...+ ..
T Consensus 151 ~~d~~~l~~~i~~~~~~~~~~~~v~~~~v~~~tG~~~~l~~i~~la~~~~~~li~D-e~~~~g~~~~~~~~~~~~~~~~~ 229 (393)
T TIGR01822 151 NNDMADLEAQLKEARAAGARHRLIATDGVFSMDGVIAPLDEICDLADKYDALVMVD-ECHATGFLGPTGRGSHELCGVMG 229 (393)
T ss_pred CCCHHHHHHHHHhhhhcCCCceEEEEeCCccCCCCcCCHHHHHHHHHHcCCEEEEE-CCccccCcCCCCCchHHhcCCCC
Confidence 567777776 542 7888887765 78999999999999999999999994 344555432111 22
Q ss_pred cceEEEecC-ccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHH
Q 001989 348 GADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQAL 426 (985)
Q Consensus 348 GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l 426 (985)
++|+++++. |+++ |+.+|++++++++.+.+... ...+.+ .+|.+ +...
T Consensus 230 ~~di~~~s~sK~l~------g~r~G~~~~~~~~~~~l~~~----------~~~~~~------------~~~~~---~~~~ 278 (393)
T TIGR01822 230 RVDIITGTLGKALG------GASGGFTTARKEVVELLRQR----------SRPYLF------------SNSLP---PAVV 278 (393)
T ss_pred CCeEEEEEChHHhh------CCCcEEEEeCHHHHHHHHHh----------Ccccee------------cCCCC---HHHH
Confidence 689999998 7664 34458999988877655110 000111 11111 1222
Q ss_pred HHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCCCcceEEEecCC---HHHHHHHHHHcCceeeee-
Q 001989 427 LANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDTVKVKCAD---AHAIASAAYKIEMNLRVV- 502 (985)
Q Consensus 427 ~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~---~~~v~~~L~~~GI~~~~~- 502 (985)
.+..+++ ..+ ++.+++.++..++.+++++.|++.| +++... ....+.+..++ +.++.+.|.++||.+...
T Consensus 279 ~a~~~al--~~~--~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~-~~~~~~i~~~~~~~~~~l~~~L~~~gI~v~~~~ 352 (393)
T TIGR01822 279 GASIKVL--EML--EASNELRDRLWANTRYFRERMEAAG-FDIKPA-DHPIIPVMLYDAVLAQRFARRLLEEGIYVTGFF 352 (393)
T ss_pred HHHHHHH--HHH--hcCHHHHHHHHHHHHHHHHHHHHcC-CCCCCC-CCCEEEEEeCCHHHHHHHHHHHHHCCeeEeeeC
Confidence 2223332 332 2456788889999999999999887 776532 12233444333 678999999999987522
Q ss_pred ----c--CCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 503 ----D--SNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 503 ----~--~~~lris~t~~~t~edId~li~aL~~ 529 (985)
. ...+|+|++.++|++|||+++++|.+
T Consensus 353 ~~~~~~~~~~iRis~~~~~t~edi~~~~~~l~~ 385 (393)
T TIGR01822 353 YPVVPKGQARIRVQISAAHTEEQLDRAVEAFTR 385 (393)
T ss_pred CCCCCCCCceEEEEECCCCCHHHHHHHHHHHHH
Confidence 1 24699999999999999999999974
|
This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function. |
| >PLN02955 8-amino-7-oxononanoate synthase | Back alignment and domain information |
|---|
Probab=99.83 E-value=5.6e-19 Score=203.21 Aligned_cols=311 Identities=18% Similarity=0.206 Sum_probs=211.8
Q ss_pred CCccceecCCCCCCCCCcHHHHHHHHhCCccccccCCChhhHhhhHHHHHHHHHHHHHHhcCCCCcceeeccchHHHHHH
Q 001989 164 NKVYKSFIGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEA 243 (985)
Q Consensus 164 n~~~~~~lG~g~y~~~~p~~v~~~i~~~~~~~t~~~pyq~e~sqg~l~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea 243 (985)
|.+.++|||.+..|....+.+. . +.+ |.+ ++..+....|+...+.++|+.+|+++|.+. +.++++|..+..+
T Consensus 106 ~FsSndYLGL~~~p~v~~a~~~-a-i~~--yG~--g~~gSrl~~G~~~~h~~LE~~LA~f~g~e~--all~sSGy~AN~~ 177 (476)
T PLN02955 106 LFSGNDYLGLSSHPTISNAAAN-A-AKE--YGM--GPKGSALICGYTTYHRLLESSLADLKKKED--CLVCPTGFAANMA 177 (476)
T ss_pred EeeccCccCCCCCHHHHHHHHH-H-HHH--cCC--CCCCcCccccChHHHHHHHHHHHHHHCCCc--EEEECChHHHHHH
Confidence 3456789999987666666553 3 333 333 445677889999999999999999999987 7788888877777
Q ss_pred HHHHhhh-----------hcCCCCEEEEcCCCChhHHHHHHHhhcCC-CeEE---EEeCchhhhc-c---CCCEeEEEEE
Q 001989 244 MAMCNNI-----------QKGKKKTFIIASNCHPQTIDICITRADGF-DIKV---VVSDLKDIDY-K---SGDVCGVLVQ 304 (985)
Q Consensus 244 ~~~a~~~-----------~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~-gi~v---~~v~~~~l~~-l---~~~t~~V~v~ 304 (985)
++-++.. ..++++.|+.++.+|+|+++.++. ++.. +.++ .+.|+++|++ + .++.+ ++|+
T Consensus 178 ~i~aL~~~~~~~~~~~~~~~~~~d~i~~D~~~HaSI~dG~~l-s~~~~~a~~~~f~HND~~~Le~~L~~~~~~~~-~Vv~ 255 (476)
T PLN02955 178 AMVAIGSVASLLAASGKPLKNEKVAIFSDALNHASIIDGVRL-AERQGNVEVFVYRHCDMYHLNSLLSSCKMKRK-VVVT 255 (476)
T ss_pred HHHHHhhccccccccccccCCCCcEEEEeccchHHHHHHHHh-ccccCCceEEEeCCCCHHHHHHHHHhCCCCce-EEEE
Confidence 6644310 013567899999999999999874 3322 3444 4457777776 4 23344 4555
Q ss_pred cC--CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCCCCC-----cc----cceEEEecC-ccccccCCCCCCcEEE
Q 001989 305 YP--GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKPPG-----EL----GADIVVGSA-QRFGVPMGYGGPHAAF 372 (985)
Q Consensus 305 ~p--n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~~~~-----~~----GaDi~v~s~-k~lg~P~~~GGP~~G~ 372 (985)
.+ ++.|.+.|+++|.++++++|++++| ++.++.|.+..-| .+ ..||++++. |.||. .| ||
T Consensus 256 EgV~SmdGdiapL~eL~~L~~~~ga~LiV-DEAH~~Gv~G~~G~G~~e~~g~~~di~ii~~TLsKA~G~---~G----Gf 327 (476)
T PLN02955 256 DSLFSMDGDFAPMEELSQLRKKYGFLLVI-DDAHGTFVCGENGGGVAEEFNCEADVDLCVGTLSKAAGC---HG----GF 327 (476)
T ss_pred eCCCCCCCCcCCHHHHHHHHHHcCcEEEE-cccccCceecCCCCcHHHHhCCCCCCcEEEEeCccchhc---cC----ce
Confidence 54 8899999999999999999999999 4567777665422 23 468999996 98864 23 68
Q ss_pred EEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHH--HHHhCcchHHHHHHHH
Q 001989 373 LATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMY--AVYHGPEGLKTIAQRV 450 (985)
Q Consensus 373 l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~--l~~~g~~Gl~~i~~~~ 450 (985)
+++++++++.+- ..+.++|+|++..+++++++. +..+ ..+ +...+++
T Consensus 328 i~gs~~~~~~l~-----------------------------~~~~~~ifStalpp~~aaa~laal~l~-~~~-~~~r~~L 376 (476)
T PLN02955 328 IACSKKWKQLIQ-----------------------------SRGRSFIFSTAIPVPMAAAAYAAVVVA-RKE-KWRRKAI 376 (476)
T ss_pred eecHHHHHHHHH-----------------------------HhCCCCeecccccHHHHHHHHHHHHHH-hcC-HHHHHHH
Confidence 888887665541 112233444433333333321 1222 122 3467888
Q ss_pred HHHHHHHHHHHhcCCCeEEcCCCCcceEEEecCC-HHHHHHHHHHcCceeeeec-------CCeEEEEeccCCCHHHHHH
Q 001989 451 HGLAGTFALGLKKLGTVEVQGLPFFDTVKVKCAD-AHAIASAAYKIEMNLRVVD-------SNTVTASFDETTTLEDVDK 522 (985)
Q Consensus 451 ~~~a~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~-~~~v~~~L~~~GI~~~~~~-------~~~lris~t~~~t~edId~ 522 (985)
+++.+|+++. .| +.+ ..| +..+.+..+. +.++.++|.++||++..+. ...+|++++..||++|||+
T Consensus 377 ~~n~~~fr~~---~G-~~~-~sP-I~pI~ig~~~~a~~~~~~L~~~Gi~v~~i~yPtVP~g~~rLRi~lsA~Ht~edId~ 450 (476)
T PLN02955 377 WERVKEFKAL---SG-VDI-SSP-IISLVVGNQEKALKASRYLLKSGFHVMAIRPPTVPPNSCRLRVTLSAAHTTEDVKK 450 (476)
T ss_pred HHHHHHHHHh---cC-CCC-CCC-EEEEEeCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCceEEEeeCCCCCHHHHHH
Confidence 8999999884 35 543 222 1133333333 7889999999999886431 2479999999999999999
Q ss_pred HHHHHhC
Q 001989 523 LFIVFAG 529 (985)
Q Consensus 523 li~aL~~ 529 (985)
++++|..
T Consensus 451 lv~~L~~ 457 (476)
T PLN02955 451 LITALSS 457 (476)
T ss_pred HHHHHHH
Confidence 9999974
|
|
| >KOG1359 consensus Glycine C-acetyltransferase/2-amino-3-ketobutyrate-CoA ligase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.3e-19 Score=187.23 Aligned_cols=310 Identities=15% Similarity=0.154 Sum_probs=217.1
Q ss_pred CCccceecCCCCCCCCCcHHHHHHHHhCCccccccCCChhhHhhhHHHHHHHHHHHHHHhcCCCCcceeeccchHHHHHH
Q 001989 164 NKVYKSFIGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEA 243 (985)
Q Consensus 164 n~~~~~~lG~g~y~~~~p~~v~~~i~~~~~~~t~~~pyq~e~sqg~l~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea 243 (985)
|.+.+||||...+|..+.+... .++. |. .+|-..+...|+-..+.++++.||++-|-+. ..+|+++-.+..+
T Consensus 71 nFcaNnYLGLsshPeii~a~~~--alee--yG--aGlssvrfIcGtq~iHk~LE~kiAqfh~rED--~ilypscfdANag 142 (417)
T KOG1359|consen 71 NFCANNYLGLSSHPEIINAGQK--ALEE--YG--AGLSSVRFICGTQDIHKLLESKIAQFHGRED--TILYPSCFDANAG 142 (417)
T ss_pred eecccccccccCChHHHHHHHH--HHHH--hC--CCccceeEEecchHHHHHHHHHHHHHhCCCc--eEEeccccccchH
Confidence 5567899999998888777764 3332 21 2555667788999999999999999999887 4555554433333
Q ss_pred HHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCchhhhc-c---CCCEeEEEEEcC--CCCeeeccHHH
Q 001989 244 MAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDLKDIDY-K---SGDVCGVLVQYP--GTEGEVLDYGD 317 (985)
Q Consensus 244 ~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~~~l~~-l---~~~t~~V~v~~p--n~~G~v~di~~ 317 (985)
+.-|+ . .+.|-|+.++.+|.|+++.++. |+ ...++|+-+++. + .+--.-+++|.. ++.|.+.|+++
T Consensus 143 ~feai-l--~pedAvfSDeLNhASIIdGirL-ck----ry~h~dv~~l~~~l~~a~k~r~klv~TDg~FSMDGdiaPl~e 214 (417)
T KOG1359|consen 143 AFEAI-L--TPEDAVFSDELNHASIIDGIRL-CK----RYRHVDVFDLEHCLISACKMRLKLVVTDGVFSMDGDIAPLEE 214 (417)
T ss_pred HHHHh-c--ChhhhhhccccccchhhhhhHH-Hh----hhccchhHHHHHHHHHhhhheEEEEEecceeccCCCcccHHH
Confidence 33333 1 2788999999999999999864 55 344566656554 2 122234667776 88999999999
Q ss_pred HHHHHHhCCcEEEEEecCccccCCCCCC-----ccc----ceEEEecC-ccccccCCCCCCcEEEEEEchhhHhcCCCce
Q 001989 318 FIKNAHANGVKVVMATDLLALTILKPPG-----ELG----ADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRI 387 (985)
Q Consensus 318 I~~~a~~~galliV~a~~~~lg~l~~~~-----~~G----aDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~ 387 (985)
|++++++||+|++++ +.++.|++...| ++| +||+.++. |.+|+- +.||..+.+.++..+
T Consensus 215 i~~La~kYgaLlfiD-ecHaTgf~G~tGrGt~E~~~vm~~vdiinsTLgKAlGga------~GGyttgp~~li~ll---- 283 (417)
T KOG1359|consen 215 ISQLAKKYGALLFID-ECHATGFFGETGRGTAEEFGVMGDVDIINSTLGKALGGA------SGGYTTGPKPLISLL---- 283 (417)
T ss_pred HHHHHHhcCcEEEEe-ecccceeecCCCCChHHHhCCCCcceehhhhhhhhhcCC------CCCCccCChhHHHHH----
Confidence 999999999999994 455666554332 233 79988886 988653 336877777665544
Q ss_pred eeeeecCCCCcceeeecccccccccccccCCCccchhHHH---HHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcC
Q 001989 388 VGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALL---ANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKL 464 (985)
Q Consensus 388 vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~---a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~ 464 (985)
|.++++++++|+..+ +..+.+|..++.. .++..+...+.+++++.++..
T Consensus 284 -------------------------rqr~RpylFSnslppavV~~a~ka~dllm~s---~~~i~~~~a~~qrfr~~me~a 335 (417)
T KOG1359|consen 284 -------------------------RQRSRPYLFSNSLPPAVVGMAAKAYDLLMVS---SKEIQSRQANTQRFREFMEAA 335 (417)
T ss_pred -------------------------HhcCCceeecCCCChhhhhhhHHHHHHHHhh---HHHHHHHHHHHHHHHHHHHhc
Confidence 234556666665543 3334445444443 455566678889999999888
Q ss_pred CCeEEcCC-CCcceEEEecCC-HHHHHHHHHHcCceee-----eecC--CeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 465 GTVEVQGL-PFFDTVKVKCAD-AHAIASAAYKIEMNLR-----VVDS--NTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 465 g~~~~~~~-~~~~~~~~~~~~-~~~v~~~L~~~GI~~~-----~~~~--~~lris~t~~~t~edId~li~aL~~ 529 (985)
| |++.+. ...-++.+.... +.+.++.|.++||++- .+++ ..+|+.++..||+||||++++++.+
T Consensus 336 G-ftIsg~~hPI~pv~lGda~lA~~~ad~lLk~Gi~Vigfs~PvVP~gkariRVqiSAaHt~edid~~i~Af~~ 408 (417)
T KOG1359|consen 336 G-FTISGASHPICPVMLGDARLASKMADELLKRGIYVIGFSYPVVPKGKARIRVQISAAHTEEDIDRLIEAFSE 408 (417)
T ss_pred C-ceecCCCCCccceecccHHHHHHHHHHHHhcCceEEeecCCcCCCCceEEEEEEehhcCHHHHHHHHHHHHH
Confidence 8 999753 233456665444 8899999999999872 2232 5689999999999999999999975
|
|
| >cd06452 SepCysS Sep-tRNA:Cys-tRNA synthase | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.8e-18 Score=198.20 Aligned_cols=301 Identities=13% Similarity=0.124 Sum_probs=189.4
Q ss_pred HHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcCCCCC
Q 001989 634 FNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKG 713 (985)
Q Consensus 634 ~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~d~~g 713 (985)
+.++++.+++++|.+.. +..++|++++..++.++. .++++|+++...|......++..|++++.++.++++
T Consensus 46 ~~~l~~~la~~~g~~~i-~~~~g~t~al~~~l~~~~--------~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~ 116 (361)
T cd06452 46 IKDFHHDLAEFLGMDEA-RVTPGAREGKFAVMHSLC--------EKGDWVVVDGLAHYTSYVAAERAGLNVREVPNTGHP 116 (361)
T ss_pred HHHHHHHHHHHcCCceE-EEeCCHHHHHHHHHHHhc--------CCCCEEEEcCCcchHHHHHHHhcCCEEEEEecCCCC
Confidence 55889999999999543 445556666644443321 367899999887776666678899999999997654
Q ss_pred --CCCHHHHHHHHHhcC----CCEEEEEEEcCC-CccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCccCCcE
Q 001989 714 --NINIEELRKAAEANR----DNLSTLMVTYPS-THGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIGADV 786 (985)
Q Consensus 714 --~iD~e~L~~~i~~~~----~~t~~Vvv~~pn-~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~g~Di 786 (985)
.+|+++|++++++.. +++++|++++|+ .+|.+. |+++|.++|+++|+++++|+++..+...+ .+.++++|+
T Consensus 117 ~~~~d~~~l~~~l~~~~~~~~~~~~lv~l~~p~n~tG~~~-~~~~i~~~~~~~~~~vivD~a~~~g~~~~-~~~~~~~d~ 194 (361)
T cd06452 117 EYHITPEGYAEVIEEVKDEFGKPPALALLTHVDGNYGNLH-DAKKIAKVCHEYGVPLLLNGAYTVGRMPV-SGKELGADF 194 (361)
T ss_pred CcccCHHHHHHHHHHHhhccCCCceEEEEECCCCCCeeec-cHHHHHHHHHHcCCeEEEECCcccCCcCC-CHHHcCCCE
Confidence 899999999986321 368899999996 599998 89999999999999999999986332222 334678999
Q ss_pred EEeCCcccccccCCCCCCceEEEEEcccccCcCCCC--ccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhc
Q 001989 787 CHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSH--PVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMG 864 (985)
Q Consensus 787 ~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~--~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg 864 (985)
++.|+||+|+. ++++|++++++++.+.+... .+... ......+++. . ..+..+++.+..+
T Consensus 195 ~~~s~~K~l~~-----~~~~G~l~~~~~~~~~l~~~~~~~~~~----------~~~~~~~~~~-~-~~~~~~~~al~~~- 256 (361)
T cd06452 195 IVGSGHKSMAA-----SAPIGVLATTEEWADIVFRTSQMFKIK----------EVELLGCTLR-G-APLVTLMASFPHV- 256 (361)
T ss_pred EEecCCccccC-----CCCeEEEEECHHHHHHHhccccccccc----------eeeeeccccC-c-hHHHHHHHHHHHH-
Confidence 99999999952 34789999987665543211 00000 0000000000 0 0111122333322
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhc--cCCeeecCCCCceeeEEEEEecCc---cccCCCCHHHHHHHHHHCCCccCCCCC
Q 001989 865 SKGLTEASKIAILNANYMAKRLEK--HYPILFRGVNGTVAHEFIVDLRGL---KNTAGIEPEDVAKRLMDYGFHGPTMSW 939 (985)
Q Consensus 865 ~eGl~~~~~~~~~~a~~l~~~L~~--g~~l~~~~~~~~~~~~~iv~~~~~---~~~~g~~~~~v~~~L~~~Gi~~~~~~~ 939 (985)
.+.+ +...+..+++++++++|++ ++++....+ ...+.+.++.+.+ ......++.++.++|.++||.+...
T Consensus 257 ~~~~-~~~~~~~~~~~~l~~~L~~l~g~~v~~~~~--~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gI~~~~~-- 331 (361)
T cd06452 257 KERV-KRWDEEVEKARWFVAELEKIEGIKQLGEKP--KNHDLMFFETPSFDEIAKKHKRRGYFLYSELKKRGIHGIKP-- 331 (361)
T ss_pred HHHH-HHHHHHHHHHHHHHHHHhcCCCeEEECCCC--CCCceEEEEcCCcchhhhhccccchhHHHHHHHcCceEEcC--
Confidence 1222 2334445667899999986 444421111 1111223333211 0000123457999999999985211
Q ss_pred CCCCEEEEeccCCCCHHHHHHHHccCChhHHH
Q 001989 940 PVPGTLMIEPTESESKSWTGIVMLSSPSEKKL 971 (985)
Q Consensus 940 p~~~~lris~t~~~t~eeId~~~~~~~l~~~~ 971 (985)
.....+|++. ...|+||+++ ++++|+++.
T Consensus 332 ~~~~~~ri~~-~g~~~e~~~~--l~~al~~~~ 360 (361)
T cd06452 332 GLTRYFKLST-YGLTWEQVEY--VVDAFKEIA 360 (361)
T ss_pred CCceEEEEEe-cCCCHHHHHH--HHHHHHHHh
Confidence 1235788886 3479999999 778877654
|
This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface. |
| >PRK05937 8-amino-7-oxononanoate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.6e-18 Score=199.18 Aligned_cols=296 Identities=14% Similarity=0.143 Sum_probs=190.2
Q ss_pred hhhhhHHHHHHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEE
Q 001989 625 DQAQGYQEMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKI 704 (985)
Q Consensus 625 e~~~G~~~~~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~v 704 (985)
....|..+.++++++.+++++|.+.+ +++++|+.++.+... .+ .++++.|++...+|++....++......
T Consensus 49 ~~~~g~~~~~~~~e~~la~~~~~~~~-l~~~sG~~a~~~~~~---~~-----~~~~d~ii~d~~~H~sv~~~~~~~~~~~ 119 (370)
T PRK05937 49 RAILGPSSLLDDLEHKIAHFHGAPEA-FIVPSGYMANLGLCA---HL-----SSVTDYVLWDEQVHISVVYSLSVISGWH 119 (370)
T ss_pred CcccCChHHHHHHHHHHHHHhCCCeE-EEECChHHHHHHHHH---Hh-----CCCCCEEEEEhhhhHHHHHHHHHcCCce
Confidence 45567778899999999999999765 677888876643221 11 1246777777888887766655443333
Q ss_pred EEEcCCCCCCCCHHHHHHHHHhcC---CCEEEEEEEcCC-CccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCC-
Q 001989 705 VSVGTDAKGNINIEELRKAAEANR---DNLSTLMVTYPS-THGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSP- 779 (985)
Q Consensus 705 v~v~~d~~g~iD~e~L~~~i~~~~---~~t~~Vvv~~pn-~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~p- 779 (985)
+.++ .+|+++|++++++.+ +++.+|++++++ .+|.+. |+++|+++|+++|++++||++|..+..+..-.
T Consensus 120 ~~~~-----~~d~~~l~~~l~~~~~~~~~~~~v~v~~v~s~~G~i~-pl~eI~~l~~~~~~~livDea~~~G~~g~~g~g 193 (370)
T PRK05937 120 QSFR-----HNDLDHLESLLESCRQRSFGRIFIFVCSVYSFKGTLA-PLEQIIALSKKYHAHLIVDEAHAMGIFGDDGKG 193 (370)
T ss_pred EEec-----CCCHHHHHHHHHhhhccCCCcEEEEEecCCCCCCCcc-CHHHHHHHHHHcCCEEEEECCccccccCCCCCc
Confidence 3344 369999999997431 346677788874 699998 89999999999999999999997554332110
Q ss_pred --CccCC---cEEEeCCcccccccCCCCCCceEEEEEcccccC---cCCCCccccCCCCCCCCCCCCCCCCCCcchhhhH
Q 001989 780 --GYIGA---DVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAP---FLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSAL 851 (985)
Q Consensus 780 --g~~g~---Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~---~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~ 851 (985)
..++. |+...+++|.+ |++|+|+++.++.... ..++.. ++ . .. ++.
T Consensus 194 ~~~~~~~~~~~~~~~tlsK~~------g~~G~~vl~~~~~~~~~~~~~~~~~-----------~s--~-~~--~~~---- 247 (370)
T PRK05937 194 FCHSLGYENFYAVLVTYSKAL------GSMGAALLSSSEVKQDLMLNSPPLR-----------YS--T-GL--PPH---- 247 (370)
T ss_pred hHHhhCCCCCcEEEEechhhh------hcCceEEEcCHHHHHHHHHhCCCCe-----------ec--C-CC--CHH----
Confidence 12332 35567777877 3346777765432111 111111 00 0 11 111
Q ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhccCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCC
Q 001989 852 ILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYG 931 (985)
Q Consensus 852 ~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~G 931 (985)
.+.+..+.+..+..+| ....++..++++++.+.|... .. +. ... +.++ +.+..++.+.|.++|
T Consensus 248 ~~~a~~aal~~l~~~~-~~~~~~l~~l~~~l~~~l~~~----~~---~~-~~~--i~~~------~~~~~~~~~~L~~~g 310 (370)
T PRK05937 248 LLISIQVAYDFLSQEG-ELARKQLFRLKEYFAQKFSSA----AP---GC-VQP--IFLP------GISEQELYSKLVETG 310 (370)
T ss_pred HHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHhcCCC----CC---CC-EEE--EEeC------ChhHHHHHHHHHHCC
Confidence 1222234444443344 233456677778887777531 00 11 111 2333 235678999999999
Q ss_pred CccCCCCCCCCCEEEEeccCCCCHHHHHHHHccCChhHHHHhhccCCcc
Q 001989 932 FHGPTMSWPVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRLKMGRQI 980 (985)
Q Consensus 932 i~~~~~~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~~~~~~~ 980 (985)
|.++...+|..+.+|++++.++|+||||+ +++.|++++++.+++=-|
T Consensus 311 i~v~~~~~~~~~~iRis~~~~~t~edid~--l~~~L~~~~~~~~~~~~~ 357 (370)
T PRK05937 311 IRVGVVCFPTGPFLRVNLHAFNTEDEVDI--LVSVLATYLEKYQKNVVI 357 (370)
T ss_pred eeEEeeCCCCCCEEEEEcCCCCCHHHHHH--HHHHHHHHHHHhCCCccc
Confidence 98875555656789999999999999999 889999999888776544
|
|
| >cd00378 SHMT Serine-glycine hydroxymethyltransferase (SHMT) | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.5e-18 Score=201.77 Aligned_cols=292 Identities=20% Similarity=0.202 Sum_probs=190.8
Q ss_pred HHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHH-----HHHCCcEEEEEcCCC
Q 001989 637 LGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPAT-----AAMCGMKIVSVGTDA 711 (985)
Q Consensus 637 ~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~-----a~~~G~~vv~v~~d~ 711 (985)
.++.+++++|.+...+.+++|++|+.+++.++. +++|+|+++++.|+.+... ++..|.+++.++++.
T Consensus 70 ~~~~~~~~~g~~~~~v~~~sgt~a~~~~l~~l~--------~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 141 (402)
T cd00378 70 AIERAKKLFGAEYANVQPHSGSQANLAVYFALL--------EPGDTIMGLDLSHGGHLTHGSFTKVSASGKLFESVPYGV 141 (402)
T ss_pred HHHHHHHHhCCCceeeecCCcHHHHHHHHHHhc--------CCCCEEEEecCccCccccccccccccccceeEEEecCCc
Confidence 567788999998766777778887755554432 4788999988888766433 556788777776643
Q ss_pred ---CCCCCHHHHHHHHHhcCCCEEEEEEEcCCCccccccCHHHHHHHHHHcCCEEEEEccccccccC---CCCCCccCCc
Q 001989 712 ---KGNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVG---LTSPGYIGAD 785 (985)
Q Consensus 712 ---~g~iD~e~L~~~i~~~~~~t~~Vvv~~pn~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~---l~~pg~~g~D 785 (985)
++.+|++++++++.+ +++++|++++|+ +|... |+++|+++||++|+++++|++|..++.. ...+.. ++|
T Consensus 142 ~~~~~~id~~~l~~~i~~--~~~~~v~~~~~~-~~~~~-~~~~I~~l~~~~~~~li~D~a~~~g~~~~g~~~~~~~-~~d 216 (402)
T cd00378 142 DPETGLIDYDALEKMALE--FKPKLIVAGASA-YPRPI-DFKRFREIADEVGAYLLVDMAHVAGLVAGGVFPNPLP-GAD 216 (402)
T ss_pred CcccCCcCHHHHHHHHHh--CCCCEEEecCcc-cCCCc-CHHHHHHHHHhcCCEEEEEccchhhhhhcccCCCccc-CCc
Confidence 589999999999963 567888887765 36666 8999999999999999999998543321 111223 689
Q ss_pred EEEeCCcccccccCCCCCCceEEEEEcc-cccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhc
Q 001989 786 VCHLNLHKTFCIPHGGGGPGMGPIGVKK-HLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMG 864 (985)
Q Consensus 786 i~~~s~hK~l~~p~g~GGPg~G~i~~~~-~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg 864 (985)
++++|+||+| +||.+|++++++ ++.+.+..... .. ..++... ...++.+ ..+..+.
T Consensus 217 v~~~s~sK~l------~G~~gg~i~~~~~~~~~~l~~~~~------------~~--~~~~~~~--~~~~a~~-~al~~~~ 273 (402)
T cd00378 217 VVTTTTHKTL------RGPRGGLILTRKGELAKKINSAVF------------PG--LQGGPHL--HVIAAKA-VALKEAL 273 (402)
T ss_pred EEEeccccCC------CCCCceEEEeccHHHHHHHHHHhC------------cc--ccCCchH--HHHHHHH-HHHHHHh
Confidence 9999999998 367777777765 65544321100 00 0011000 1111111 2222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCCCCC--
Q 001989 865 SKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPV-- 941 (985)
Q Consensus 865 ~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~~p~-- 941 (985)
..++.+..++..++++++.+.|++ ++.+.. .+.+ .+.+.++++. .+.+...+.+.|.++||.+....+|.
T Consensus 274 ~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~-~~~~--~~~v~v~~~~----~~~~~~~~~~~l~~~gI~v~~~~~p~~~ 346 (402)
T cd00378 274 EPEFKAYAKQVVENAKALAEALKERGFKVVS-GGTD--NHLVLVDLRP----KGITGKAAEDALEEAGITVNKNTLPWDP 346 (402)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCCCeEee-cCCC--CeEEEEeCCc----cCCCHHHHHHHHHHcCcEEcCCcCCCCC
Confidence 224566677788999999999987 555532 2212 2234566541 13456677888888999986533332
Q ss_pred -----CCEEEEeccCCC----CHHHHHHHHccCChhHHHHh
Q 001989 942 -----PGTLMIEPTESE----SKSWTGIVMLSSPSEKKLHR 973 (985)
Q Consensus 942 -----~~~lris~t~~~----t~eeId~~~~~~~l~~~~~~ 973 (985)
.+++|++++..+ +.+||++ +++.|++++..
T Consensus 347 ~~~~~~~~lRi~~~~~~~~~~~~~di~~--~~~~l~~~~~~ 385 (402)
T cd00378 347 SSPFVPSGIRIGTPAMTTRGMGEEEMEE--IADFIARALKD 385 (402)
T ss_pred CCCCCCCeeEecCHHHHHhCCCHHHHHH--HHHHHHHHHhc
Confidence 257999998754 7999999 77778776643
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). SHMT carries out interconversion of serine and glycine; it catalyzes the transfer of hydroxymethyl group of N5, N10-methylene tetrahydrofolate to glycine resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers; the mammalian enzyme forms a homotetramer comprising four pyridoxal phosphate-bound active sites. |
| >TIGR02539 SepCysS Sep-tRNA:Cys-tRNA synthase | Back alignment and domain information |
|---|
Probab=99.82 E-value=6.3e-18 Score=194.28 Aligned_cols=285 Identities=17% Similarity=0.156 Sum_probs=193.0
Q ss_pred HhhhHHHHHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEE
Q 001989 205 IAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVV 284 (985)
Q Consensus 205 ~sqg~l~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~ 284 (985)
..+|+...+.++++.+|+++|++. +.+++|++.++.+++.++. ++||+|+++...|.+....++ ..|++++
T Consensus 45 ~~~~~~~~~~~~~e~lA~~~g~~~--~~i~~g~~~a~~~~~~~l~---~~gd~Vl~~~~~h~s~~~~~~----~~g~~~~ 115 (370)
T TIGR02539 45 LDQITKPPIHDFLEDLAEFLGMDE--ARVTHGAREGKFAVMHALC---KEGDWVVLDGLAHYTSYVAAE----RAGLNVK 115 (370)
T ss_pred cccccchHHHHHHHHHHHHhCCCc--eEEECChHHHHHHHHHHhh---CCCCEEEECCcccHHHHHHHH----HcCCEEE
Confidence 456666788888999999999987 5567999988888777652 388999999999988876543 4677877
Q ss_pred EeCc----------hhhhc-cC-------CCEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCC-CC
Q 001989 285 VSDL----------KDIDY-KS-------GDVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILK-PP 344 (985)
Q Consensus 285 ~v~~----------~~l~~-l~-------~~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~-~~ 344 (985)
.++. ++|++ +. +++++|++++| |++|.+.|+++|+++||++|++++|| +.++.|.+. ..
T Consensus 116 ~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~lv~~~~p~~~~G~~~~l~~i~~la~~~~~~livD-ea~~~g~~~~~~ 194 (370)
T TIGR02539 116 EVPHTGHPEYKVDPEGYGEVIEEVEDESGKPPVLALLTHVDGEYGNLPDAGKVAKVCREKGVPLLLN-CAYTVGRMPVSA 194 (370)
T ss_pred EEecCCcccCCcCHHHHHHHHHHhhhccCCCcEEEEEECCCCCCccccCHHHHHHHHHHcCCeEEEE-CccccCCcCCCH
Confidence 7643 45555 53 36788999998 68999999999999999999999995 355666543 33
Q ss_pred CcccceEEEecC-ccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccch
Q 001989 345 GELGADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTA 423 (985)
Q Consensus 345 ~~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~ 423 (985)
..+++|+++++. |+++. ||| +||+++++++++.+...... |.+.. .....+|++.
T Consensus 195 ~~~~~di~v~s~sK~~~~----~g~-~G~l~~~~~~i~~l~~~~~~----------~~~~~------~~~~~~~~~~--- 250 (370)
T TIGR02539 195 KEIGADFIVGSGHKSMAA----SGP-CGVLGMSEEWEDIVLRKSRY----------SPVKE------VELLGCTSRG--- 250 (370)
T ss_pred HHcCCCEEEeeCcccccC----CCC-EEEEEECHHHHhhhcccccC----------Cccce------eeeecccccc---
Confidence 468899999998 77752 333 89999999988876321111 11100 0001122221
Q ss_pred hHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcC--CCCcceEEEecCC-----------HHHHHH
Q 001989 424 QALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQG--LPFFDTVKVKCAD-----------AHAIAS 490 (985)
Q Consensus 424 ~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~--~~~~~~~~~~~~~-----------~~~v~~ 490 (985)
.+..+..+++ ... .+-++. ..+..+++++++++|+++| ++++. +...+.+.++.+. +..+.+
T Consensus 251 ~~~~~~~~al--~~~-~~~l~~-~~~~~~~~~~l~~~L~~~g-~~~~~~~~s~t~~v~~~~~~~~~~~~~~~~~~~~~~~ 325 (370)
T TIGR02539 251 APIVTMMASF--PHV-VERVKR-WDEEVKKTRWFVAELEDIG-FIQLGQKPKEHDLVKFETPGFHEIAQKHKRRGYFLYE 325 (370)
T ss_pred cHHHHHHHHH--HHH-HHHHHH-HHHHHHHHHHHHHHHHhCC-cEEEccCCCcCceEEEECCchhHHhhhhccccHHHHH
Confidence 1222223332 111 122222 2344556789999999998 88752 2222334444432 346899
Q ss_pred HHHHcCce-eeeecCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 491 AAYKIEMN-LRVVDSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 491 ~L~~~GI~-~~~~~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
+|.++||. ++.-.++.+|++++ ..|++|+++++++|.+
T Consensus 326 ~L~e~GI~~ir~~~~~~iRis~~-~~t~e~i~~l~~~L~~ 364 (370)
T TIGR02539 326 ELKKRGIHGIRSGQTKYFKLSVY-GLTKEQVEYVVDSFEE 364 (370)
T ss_pred HHHhCCCccccCCcceEEEEEec-CCCHHHHHHHHHHHHH
Confidence 99999997 55322468999984 6799999999999974
|
Aminoacylation of tRNA(Cys) with Cys, and cysteine biosynthesis in the process, happens in Methanocaldococcus jannaschii and several other archaea by misacylation of tRNA(Cys) with O-phosphoserine (Sep), followed by modification of the phosphoserine to cysteine. In some species, direct tRNA-cys aminoacylation also occurs but this pathway is required for Cys biosynthesis. Members of this protein catalyze the second step in this two step pathway, using pyridoxal phosphate and a sulfur donor to synthesize Cys from Sep while attached to the tRNA. |
| >TIGR01822 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A ligase | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.2e-18 Score=201.90 Aligned_cols=296 Identities=16% Similarity=0.205 Sum_probs=197.6
Q ss_pred hhHHHHHHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEE
Q 001989 628 QGYQEMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSV 707 (985)
Q Consensus 628 ~G~~~~~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v 707 (985)
.|..+...++++.+++++|.+.. +.+++|++|+.+++.++. +++|+|++++..|.++...++..+.+.+.+
T Consensus 79 ~G~~~~~~~le~~ia~~~g~~~~-ii~~~~~~a~~~~~~~l~--------~~gd~vi~~~~~~~s~~~~~~~~~~~~~~~ 149 (393)
T TIGR01822 79 CGTQDIHKELEAKIAAFLGTEDT-ILYASCFDANGGLFETLL--------GAEDAIISDALNHASIIDGVRLCKAKRYRY 149 (393)
T ss_pred cCChHHHHHHHHHHHHHhCCCcE-EEECchHHHHHHHHHHhC--------CCCCEEEEeccccHHHHHHHHhcCCceEEe
Confidence 46667788999999999998754 444667777654443331 478999999988887776677777776555
Q ss_pred cCCCCCCCCHHHHHHHHHhc---CCCEEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCCC------
Q 001989 708 GTDAKGNINIEELRKAAEAN---RDNLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLT------ 777 (985)
Q Consensus 708 ~~d~~g~iD~e~L~~~i~~~---~~~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~------ 777 (985)
+ .+|+++|++++++. +.+|++|++.++ |.+|.+. |+++|+++|+++|+++++|++|..+..+..
T Consensus 150 ~-----~~d~~~l~~~i~~~~~~~~~~~~v~~~~v~~~tG~~~-~l~~i~~la~~~~~~li~De~~~~g~~~~~~~~~~~ 223 (393)
T TIGR01822 150 A-----NNDMADLEAQLKEARAAGARHRLIATDGVFSMDGVIA-PLDEICDLADKYDALVMVDECHATGFLGPTGRGSHE 223 (393)
T ss_pred C-----CCCHHHHHHHHHhhhhcCCCceEEEEeCCccCCCCcC-CHHHHHHHHHHcCCEEEEECCccccCcCCCCCchHH
Confidence 4 37999999999742 127888888776 5789998 899999999999999999999854432210
Q ss_pred CCC-ccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHH
Q 001989 778 SPG-YIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPIS 856 (985)
Q Consensus 778 ~pg-~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a 856 (985)
..+ ..++|++++++||++ +|+++|++++++++.+.+..... ....++.. ....+.++
T Consensus 224 ~~~~~~~~di~~~s~sK~l------~g~r~G~~~~~~~~~~~l~~~~~-----------~~~~~~~~-----~~~~~~a~ 281 (393)
T TIGR01822 224 LCGVMGRVDIITGTLGKAL------GGASGGFTTARKEVVELLRQRSR-----------PYLFSNSL-----PPAVVGAS 281 (393)
T ss_pred hcCCCCCCeEEEEEChHHh------hCCCcEEEEeCHHHHHHHHHhCc-----------cceecCCC-----CHHHHHHH
Confidence 011 125799999999997 35678999988766554321100 00001100 11112223
Q ss_pred HHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccC
Q 001989 857 YTYIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGP 935 (985)
Q Consensus 857 ~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~ 935 (985)
.+++..+ ++.++..++..++++++.+.|++ ++++. ++..+. +.+.+.. +.+..++++.|.++||.+.
T Consensus 282 ~~al~~~--~~~~~~~~~~~~~~~~l~~~L~~~g~~~~--~~~~~~---~~i~~~~-----~~~~~~l~~~L~~~gI~v~ 349 (393)
T TIGR01822 282 IKVLEML--EASNELRDRLWANTRYFRERMEAAGFDIK--PADHPI---IPVMLYD-----AVLAQRFARRLLEEGIYVT 349 (393)
T ss_pred HHHHHHH--hcCHHHHHHHHHHHHHHHHHHHHcCCCCC--CCCCCE---EEEEeCC-----HHHHHHHHHHHHHCCeeEe
Confidence 3444443 23445566778889999999976 55542 211221 2233321 1346789999999999876
Q ss_pred CCCCCC----CCEEEEeccCCCCHHHHHHHHccCChhHHHHhh
Q 001989 936 TMSWPV----PGTLMIEPTESESKSWTGIVMLSSPSEKKLHRL 974 (985)
Q Consensus 936 ~~~~p~----~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~ 974 (985)
...+|. ...+|++++..+|++|||+ +++.|+++.+.+
T Consensus 350 ~~~~~~~~~~~~~iRis~~~~~t~edi~~--~~~~l~~~~~~~ 390 (393)
T TIGR01822 350 GFFYPVVPKGQARIRVQISAAHTEEQLDR--AVEAFTRIGREL 390 (393)
T ss_pred eeCCCCCCCCCceEEEEECCCCCHHHHHH--HHHHHHHHHHHh
Confidence 443441 2469999999999999999 888888887654
|
This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function. |
| >PRK07179 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.6e-18 Score=201.93 Aligned_cols=288 Identities=16% Similarity=0.155 Sum_probs=192.4
Q ss_pred HHHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcCCCC
Q 001989 633 MFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAK 712 (985)
Q Consensus 633 ~~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~d~~ 712 (985)
...++++.+++++|.+.+ +++++|++|+.+++.++. .+++.|+++...|.+....+...|++++.++.
T Consensus 100 ~~~~le~~la~~~g~~~~-~~~~sG~~An~~~l~~l~--------~~g~~v~~~~~~h~s~~~~~~~~g~~~~~~~~--- 167 (407)
T PRK07179 100 PKPQFEKKLAAFTGFESC-LLCQSGWAANVGLLQTIA--------DPNTPVYIDFFAHMSLWEGVRAAGAQAHPFRH--- 167 (407)
T ss_pred HHHHHHHHHHHHhCCCcE-EEECCHHHHHHHHHHHhC--------CCCCEEEEECCcCHHHHHHHHHCCCeEEEecC---
Confidence 455788999999998765 667888887766555432 35688998888787666666778888876654
Q ss_pred CCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCCC-C--CCc----cCC
Q 001989 713 GNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLT-S--PGY----IGA 784 (985)
Q Consensus 713 g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~-~--pg~----~g~ 784 (985)
.|+++|++++++ .++++|+++++ |++|.+. |+++|.++|+++|+++|+|++|..+..+.. . ... .++
T Consensus 168 --~d~~~l~~~l~~--~~~~lV~v~~v~n~tG~i~-pl~~I~~l~~~~~~~livDea~~~g~~g~~g~g~~~~~~~~~~v 242 (407)
T PRK07179 168 --NDVDHLRRQIER--HGPGIIVVDSVYSTTGTIA-PLADIVDIAEEFGCVLVVDESHSLGTHGPQGAGLVAELGLTSRV 242 (407)
T ss_pred --CCHHHHHHHHHh--cCCeEEEECCCCCCCCccc-cHHHHHHHHHHcCCEEEEECcccccCcCCCCCchHHhcCCCCCC
Confidence 599999999972 24778888887 4799998 899999999999999999999964332110 0 011 246
Q ss_pred cEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhc
Q 001989 785 DVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMG 864 (985)
Q Consensus 785 Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg 864 (985)
|+++.|+||+++ +++|++++++++.+.++.... ....+ +++..+. ++++.+.+..+.
T Consensus 243 di~~~S~sK~~g-------~~~G~l~~~~~~~~~~~~~~~-----------~~~~~---~t~~~~~--~aa~~aal~~~~ 299 (407)
T PRK07179 243 HFITASLAKAFA-------GRAGIITCPRELAEYVPFVSY-----------PAIFS---STLLPHE--IAGLEATLEVIE 299 (407)
T ss_pred CEEEeechHhhh-------ccCeEEEeCHHHHHHHHHhCc-----------CeeeC---CCCCHHH--HHHHHHHHHHHh
Confidence 999999999983 247899988776554421100 00001 1111111 112223344442
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCCCC---
Q 001989 865 SKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWP--- 940 (985)
Q Consensus 865 ~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~~p--- 940 (985)
. ..+..++..+++++++++|++ ++++. +. +. .+.+.+.. ..+...+.+.|.++||.+.....|
T Consensus 300 ~--~~~~~~~l~~~~~~l~~~L~~~g~~v~--~~-~~---i~~l~~~~-----~~~~~~~~~~L~~~GI~~~~~~~p~~~ 366 (407)
T PRK07179 300 S--ADDRRARLHANARFLREGLSELGYNIR--SE-SQ---IIALETGS-----ERNTEVLRDALEERNVFGAVFCAPATP 366 (407)
T ss_pred c--CHHHHHHHHHHHHHHHHHHHHcCCCCC--CC-CC---EEEEEeCC-----HHHHHHHHHHHHHCCceEeeecCCCCC
Confidence 2 234556788889999999987 45443 21 22 22333320 124567888999999985432222
Q ss_pred -CCCEEEEeccCCCCHHHHHHHHccCChhHHHHhhc
Q 001989 941 -VPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRLK 975 (985)
Q Consensus 941 -~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~~ 975 (985)
..+.+||+++..+|++|||+ ++++|++++++..
T Consensus 367 ~~~~~lRis~~~~~t~edi~~--~~~~l~~~~~~~~ 400 (407)
T PRK07179 367 KNRNLIRLSLNADLTASDLDR--VLEVCREARDEVD 400 (407)
T ss_pred CCCceEEEEECCCCCHHHHHH--HHHHHHHHHHhhC
Confidence 24789999999999999999 7788988887644
|
|
| >KOG1549 consensus Cysteine desulfurase NFS1 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.5e-18 Score=192.27 Aligned_cols=322 Identities=17% Similarity=0.182 Sum_probs=201.1
Q ss_pred ecCCCCCCCCCcHHHHHHHHhCCcccccc--CCChhhHhhhHHH--HHHHHHHHHHHhcCCCCcceeeccchHHHHHHHH
Q 001989 170 FIGMGYYNTHVPPVILRNIMENPAWYTQY--TPYQAEIAQGRLE--SLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMA 245 (985)
Q Consensus 170 ~lG~g~y~~~~p~~v~~~i~~~~~~~t~~--~pyq~e~sqg~l~--~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~ 245 (985)
|+..+... .+|+.|.+++.. |++.| +|-.. +-||-. ++.++|+.+|+|+|+++.++++++|+|.++..++
T Consensus 46 yld~~at~-p~~~~Vldam~~---~~~~~~~nPh~~--~y~w~~~~~~E~aR~~VAklInAd~~dIiFts~ATEs~Nlvl 119 (428)
T KOG1549|consen 46 YLDNQATG-PMDPRVLDAMLP---YLLEYLGNPHSR--SYGWKAEDAVEAAREQVAKLINADPSDIVFTSGATESNNLVL 119 (428)
T ss_pred EEecCcCC-CCCHHHHHHHHH---HHHHhhcCCCcc--ccchhhhHHHHHHHHHHHHHhCCCCCcEEEeCCchHHHHHHH
Confidence 44444433 266666545443 44444 33222 334443 4899999999999999999999999995544443
Q ss_pred HHhhhhcCCCC----EEEEcCCCChhHHHHHHHhhcCCCeEEEEeCch--------hhhc-cCCCEeEEEEEcC-CCCee
Q 001989 246 MCNNIQKGKKK----TFIIASNCHPQTIDICITRADGFDIKVVVSDLK--------DIDY-KSGDVCGVLVQYP-GTEGE 311 (985)
Q Consensus 246 ~a~~~~~~~g~----~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~~--------~l~~-l~~~t~~V~v~~p-n~~G~ 311 (985)
....+. .++ +||+...+||++...|+.+. ..|++++++|++ ++++ ++++|++|.+.+. |..|+
T Consensus 120 ~~v~~~--~~~~~~k~iitl~~eH~~v~~s~~~l~-~~g~~Vt~lpv~~~~~~d~~~~~~~i~~~T~lv~I~~Vnn~~gv 196 (428)
T KOG1549|consen 120 KGVARF--FGDKTKKHIITLQTEHPCVLDSCRALQ-EEGLEVTYLPVEDSGLVDISKLREAIRSKTRLVSIMHVNNEIGV 196 (428)
T ss_pred HHhhcc--ccccccceEEEecccCcchhHHHHHHH-hcCeEEEEeccCccccccHHHHHHhcCCCceEEEEEecccCccc
Confidence 332222 333 89999999999999999864 578999998763 4555 8999999999875 78999
Q ss_pred eccHHHHHHHHHhCCcEEEEEecCccccCC-CCCCcccceEEEecCccccccCCCCCCcEEEEEEchh--hHhcCCCcee
Q 001989 312 VLDYGDFIKNAHANGVKVVMATDLLALTIL-KPPGELGADIVVGSAQRFGVPMGYGGPHAAFLATSQE--YKRMMPGRIV 388 (985)
Q Consensus 312 v~di~~I~~~a~~~galliV~a~~~~lg~l-~~~~~~GaDi~v~s~k~lg~P~~~GGP~~G~l~~~~~--~~~~lp~~~v 388 (985)
+.|++||+++|++.|+.+++|+ .++.|.. .+..++|+|+++.++++| +|.|++|+|||+++ .++ +.+.+.
T Consensus 197 ~~Pv~EI~~icr~~~v~v~~Da-AQavG~i~vDV~eln~D~~s~s~HK~-----ygp~~iGaLYvr~~~~~~~-~~p~~~ 269 (428)
T KOG1549|consen 197 LQPVKEIVKICREEGVQVHVDA-AQAVGKIPVDVQELNADFLSISAHKI-----YGPPGIGALYVRRKRPRLR-VEPPLS 269 (428)
T ss_pred cccHHHHHHHhCcCCcEEEeeh-hhhcCCccccHHHcCchheeeecccc-----cCCCcceEEEEccCCCccc-ccCccc
Confidence 9999999999999999999954 4567755 356899999999999666 34577999999972 222 234455
Q ss_pred eeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhc-CCCe
Q 001989 389 GVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKK-LGTV 467 (985)
Q Consensus 389 G~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~-~g~~ 467 (985)
| |.+ -| ..+.||-++..+- ++.+++-.......+.+.+.++ +...+..++.. ...+
T Consensus 270 G------Ggq-------~r----~~rsGT~~~~~~~---~~gsA~e~~~~~~~~~~~~~~~---~~~~ll~~i~~~~~~~ 326 (428)
T KOG1549|consen 270 G------GGQ-------ER----GLRSGTVATPLAV---GLGSAAEFVNKEMAYDEAIIKR---LSEKLLMGIGQSLPEV 326 (428)
T ss_pred C------Ccc-------cc----ccccCCcCchhhh---hhHHHHHHHHhhcchhHHHHHH---HHHHHHHHHhhhCchh
Confidence 5 211 11 1235776664333 3344442122222333444443 45555555533 2112
Q ss_pred EEcCC-C--CcceEEEecC--CHHHHHHHHHH----cCce-----eee------------ecCCeEEEEeccCCCHHHHH
Q 001989 468 EVQGL-P--FFDTVKVKCA--DAHAIASAAYK----IEMN-----LRV------------VDSNTVTASFDETTTLEDVD 521 (985)
Q Consensus 468 ~~~~~-~--~~~~~~~~~~--~~~~v~~~L~~----~GI~-----~~~------------~~~~~lris~t~~~t~edId 521 (985)
.+.+. + ....+.|.++ ....+...+.+ -|.. +++ .....+|+|+.-|+|.+|+|
T Consensus 327 ~~~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~s~~a~~~~~~epsy~l~~~G~~~~~~~~~iRis~G~y~t~~di~ 406 (428)
T KOG1549|consen 327 TLNGSGKSRYPGLVSLSFPYVEGESLLMDLKDVALSSGSACTSASLEPSYVLRAIGVDEDLAHSSIRISIGRYTTEEDID 406 (428)
T ss_pred hccCCcccccccceeeecccccCcchhhhhhhhhhcccchhhcCCCCcchhhhhcCcchhhhcceeEEeeeeeCcHHHHH
Confidence 33322 1 1123344443 11111112211 1111 010 01367999999999999999
Q ss_pred HHHHHHhCC
Q 001989 522 KLFIVFAGG 530 (985)
Q Consensus 522 ~li~aL~~~ 530 (985)
++++++.+.
T Consensus 407 ~~~~~i~~~ 415 (428)
T KOG1549|consen 407 YLVDAIKKL 415 (428)
T ss_pred HHHHHHHHH
Confidence 999999753
|
|
| >COG0160 GabT 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.1e-18 Score=198.28 Aligned_cols=349 Identities=15% Similarity=0.159 Sum_probs=229.1
Q ss_pred CCHHHHHHHHHHHhccccCcccccccccccccCCCccccccccccccccc-cCCCCchhhhhhHHHHHHHHHHHHHHHhC
Q 001989 568 HTEHELLRYIHLLQSKELSLCHSMIPLGSCTMKLNATTEMMPVTWPSFAN-IHPFAPADQAQGYQEMFNNLGEWLCTITG 646 (985)
Q Consensus 568 ~se~e~~~~l~~l~~~~~~~~~~~~~lG~~t~~~~~~~~~~~~~~~~f~~-~~p~~p~e~~~G~~~~~~e~~~~la~l~G 646 (985)
+-+.+..+||+.+++-+ ...+|+++|.+..+.+.+.....+..+ +.++. ...++.+.|.+++.
T Consensus 50 l~DvdG~~ylDf~sgi~------v~~~GH~hP~Vv~Av~~q~~~~~h~~~~~~~~e----------~~v~~ae~L~~~~p 113 (447)
T COG0160 50 LYDVDGNEYLDFLSGIA------VLNLGHNHPRVVEAVKRQLAKLNHTHTRDLYYE----------PYVELAEKLTALAP 113 (447)
T ss_pred EEeCCCCEEEEcccCcc------hhccCCCCHHHHHHHHHHHHHhhcccCCcccch----------hHHHHHHHHHHhCC
Confidence 34567778888877655 456899999998887777644332222 22322 23467777888776
Q ss_pred CC--ccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEE-EcCCCCcccHHHHHH--------CC-----cEEEEEcCC
Q 001989 647 FD--SFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCI-IPVSAHGTNPATAAM--------CG-----MKIVSVGTD 710 (985)
Q Consensus 647 ~~--~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~II-v~~~~Hg~~~~~a~~--------~G-----~~vv~v~~d 710 (985)
.+ ...++.+||++|++++++.+|.| +++..|| +...+||....++.+ .| -.|..+|..
T Consensus 114 ~~~~~~~~f~~sGaeA~E~AiKiAr~~------Tgr~~viaf~~afHG~T~galslT~~~~~~~~~~~~~~~~v~~~Pyp 187 (447)
T COG0160 114 GSGLKKVFFGNSGAEAVEAAIKIARAY------TGRPGVIAFDGAFHGRTLGALSLTGSKPPYKAGFGPLPPGVYHVPYP 187 (447)
T ss_pred cccCCeEEecCCcHHHHHHHHHHHHHH------hCCCcEEEECCcccccchhhHHhccCccccccCCCCCCCCeEEecCC
Confidence 53 23577899999999999999986 2444555 477899977665432 11 136777763
Q ss_pred CCC------------CCCHHHHHHHHHhc---CCCEEEEEEEcC-CCcccccc---CHHHHHHHHHHcCCEEEEEccccc
Q 001989 711 AKG------------NINIEELRKAAEAN---RDNLSTLMVTYP-STHGVYEE---GIDEICKIIHDNGGQVYMDGANMN 771 (985)
Q Consensus 711 ~~g------------~iD~e~L~~~i~~~---~~~t~~Vvv~~p-n~~G~i~~---di~eI~~la~~~galliVD~a~~~ 771 (985)
... .-..+.++..+... ..++++++++-. ..-|++.+ -++++.++|+++|+++|+|++|
T Consensus 188 ~~yr~p~~~~~~~~~~~~~~~~e~~i~~~~~~~~~vAaiI~EpIQgegG~~v~p~~fl~~l~~~~~~~gillI~DEVQ-- 265 (447)
T COG0160 188 NPYRCPFGIGGEECGDDALEYIERALFDLEVGPEEVAAIIIEPIQGEGGIIVPPKGFLKALRKLCREHGILLIADEVQ-- 265 (447)
T ss_pred ccccCcccCchhhhhHHHHHHHHHHHHhhcCCCCceeEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccc--
Confidence 211 11244456655421 246788888764 46777763 3899999999999999999887
Q ss_pred cccCCCCCCccC--------CcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCC
Q 001989 772 AQVGLTSPGYIG--------ADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIA 843 (985)
Q Consensus 772 ~~~~l~~pg~~g--------~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~ 843 (985)
.|++++|.|. +||++++ |.++ . |--+|.++.++++....|+.. .
T Consensus 266 --tG~GRTG~~fa~E~~gv~PDivt~a--K~ig----~-G~Pl~avv~r~ei~~~~~g~~-------------------~ 317 (447)
T COG0160 266 --TGFGRTGKMFAFEHFGVEPDIVTLA--KSLG----G-GLPLSAVVGRAEIMDWPPGGH-------------------G 317 (447)
T ss_pred --cCCCccccchhhhhcCCCCCEEEec--cccc----C-CCceeEEeccHHhcccCCccc-------------------C
Confidence 5667777653 7999774 7663 3 444666777888877544432 1
Q ss_pred CcchhhhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc---cCCeeecCCCCceeeEEEEE-ecCccccCCCC
Q 001989 844 AAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK---HYPILFRGVNGTVAHEFIVD-LRGLKNTAGIE 919 (985)
Q Consensus 844 s~~~g~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~---g~~l~~~~~~~~~~~~~iv~-~~~~~~~~g~~ 919 (985)
.++.|++.+++++.+.|..+..+++. ++..+..+||+++|.+ -+.++-.-.....+..+-+. .+..+++....
T Consensus 318 ~Tf~GNpva~Aaa~AvL~vie~e~L~---~~a~~~G~~l~~~L~~l~~~~~~IgdVRG~Glm~giE~v~d~~t~~p~~~~ 394 (447)
T COG0160 318 GTFGGNPVACAAALAVLDVIEEENLL---ERAAELGEYLRDRLEELQEKHPLIGDVRGLGLMIGVELVKDRDTKEPDAEL 394 (447)
T ss_pred CCCCcCHHHHHHHHHHHHHHHHccHH---HHHHHHHHHHHHHHHHHHhhcCceecccccceEEEEEEecCCCCCCCCHHH
Confidence 12556888888899999988877665 4667788999998864 23332111111122222111 11001111122
Q ss_pred HHHHHHHHHHCCCccCCCCCCCCCEEEEeccCCCCHHHHHHHHccCChhHHHHhh
Q 001989 920 PEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRL 974 (985)
Q Consensus 920 ~~~v~~~L~~~Gi~~~~~~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~ 974 (985)
...+++++.++|+.+.++. +..+.|||.|+...|+||+|+ ++++|++++..+
T Consensus 395 ~~~i~~~~~~~Glil~~~G-~~~nviRi~PPL~is~e~~d~--~l~il~~al~~~ 446 (447)
T COG0160 395 AAKIVARAFERGLLLLTCG-PHGNVLRILPPLTISDEELDE--GLDILEEALKEA 446 (447)
T ss_pred HHHHHHHHHHcCCEEeccC-CCCcEEEEeCCcccCHHHHHH--HHHHHHHHHHhh
Confidence 5678899999999876554 235899999999999999999 889999888754
|
|
| >PF00464 SHMT: Serine hydroxymethyltransferase; InterPro: IPR001085 Synonym(s): Serine hydroxymethyltransferase, Serine aldolase, Threonine aldolase Serine hydroxymethyltransferase (SHMT) is a pyridoxal phosphate (PLP) dependent enzyme and belongs to the aspartate aminotransferase superfamily (fold type I) [] | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.8e-19 Score=201.80 Aligned_cols=286 Identities=22% Similarity=0.242 Sum_probs=179.1
Q ss_pred HHHHHHHHHHHHHhCCC----ccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccH---HHH-------
Q 001989 632 EMFNNLGEWLCTITGFD----SFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNP---ATA------- 697 (985)
Q Consensus 632 ~~~~e~~~~la~l~G~~----~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~---~~a------- 697 (985)
++..-+++.++++||++ .+++++.||+.|+.++++++. +++|+|+..+..||-|. ...
T Consensus 66 ~iE~la~~ra~~lF~~~~~~w~anvqp~SGs~An~av~~aLl--------~pGD~Im~l~l~~GGHlshg~~~~~~~~~~ 137 (399)
T PF00464_consen 66 EIEELAIERAKELFGAEPKEWYANVQPHSGSQANLAVYMALL--------KPGDTIMGLSLPHGGHLSHGSSVNFKKISA 137 (399)
T ss_dssp HHHHHHHHHHHHHHT-STTTEEEE---SSHHHHHHHHHHHHT---------TT-EEEEEEGGGT--GGGT-TTSHSBSSH
T ss_pred HHHHHHHHHHHHHhCCCcccceEEeecCCchHHHHHHHHHHH--------hhcCcEEecChhhccccccccccccccccc
Confidence 34444567788999999 788999999999988777664 47899998776676553 221
Q ss_pred HHCCcEEEEEcCC-CCCCCCHHHHHHHHHhcCCCEEEEEEEcCCCccccccCHHHHHHHHHHcCCEEEEEccccccc---
Q 001989 698 AMCGMKIVSVGTD-AKGNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQ--- 773 (985)
Q Consensus 698 ~~~G~~vv~v~~d-~~g~iD~e~L~~~i~~~~~~t~~Vvv~~pn~~G~i~~di~eI~~la~~~galliVD~a~~~~~--- 773 (985)
....++++.+++| +++.+|.|++++.+.+++| ++|++...++.-.+ |++++.++|++.|++|++|++|..++
T Consensus 138 ~~~~~~~~~y~~d~~~~~ID~d~l~~~a~~~kP--klIi~G~S~y~~~~--d~~~~reIad~vga~l~~D~sH~~GLIa~ 213 (399)
T PF00464_consen 138 SGLYFESVPYPVDPDTGLIDYDELEKLAKEHKP--KLIICGASSYPRPI--DFKRFREIADEVGAYLMADISHIAGLIAG 213 (399)
T ss_dssp HHHHSEEEEEEB-TTTSSB-HHHHHHHHHHH----SEEEEE-SSTSS-----HHHHHHHHHHTT-EEEEE-TTTHHHHHT
T ss_pred ccceEEEEeeeeecCCCeECHHHHHHHHhhcCC--CEEEECchhccCcc--CHHHHHHHHHhcCcEEEecccccccceeh
Confidence 2245788889998 4599999999999987544 45777655543333 79999999999999999999996544
Q ss_pred cCCCCCCccCCcEEEeCCcccccccCCCCCCceEEEEEcc--------------cccCcCCCCccccCCCCCCCCCCCCC
Q 001989 774 VGLTSPGYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKK--------------HLAPFLPSHPVVSTGGIPAPEKSQPL 839 (985)
Q Consensus 774 ~~l~~pg~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~--------------~l~~~lp~~~~g~~~~~~~~~~~~~~ 839 (985)
+.+.+|-.+ +|++++++||+| .||..|+|.+++ ++.+.+...++
T Consensus 214 g~~~~P~~~-ADvvt~sThKtl------~GPrggiI~~~~~~~~~~~~~~~~~~~l~~~I~~avf--------------- 271 (399)
T PF00464_consen 214 GLFPNPFPY-ADVVTGSTHKTL------RGPRGGIILTNKGSKNVDKKGKEIDEELAEKIDSAVF--------------- 271 (399)
T ss_dssp TSS--GCCT-SSEEEEESSGGG-------SSS-EEEEES-SEEEE-TTS-EEEHHHHHHHHHHHT---------------
T ss_pred heecCcccc-ceEEEeeccccc------cccCceEEEEcCCccccCCcccccHHHHHHHhccccC---------------
Confidence 334577765 999999999999 589999999992 23222211110
Q ss_pred CCCCCcchhhhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCC
Q 001989 840 GTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGI 918 (985)
Q Consensus 840 ~~i~s~~~g~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~ 918 (985)
+...+++.-+ -.++.|.+..+.+ ...++++++++.+|++.|++.|.+ |++++.. ++..|.++++++. .++
T Consensus 272 P~~qg~~h~~-~iaalAval~ea~-~~~fk~Ya~qVv~NAk~La~~L~~~G~~v~~g---gTd~H~vlvd~~~----~~~ 342 (399)
T PF00464_consen 272 PGLQGGPHMH-RIAALAVALKEAL-SPEFKEYAKQVVKNAKALAEALQERGFKVVTG---GTDNHQVLVDLRS----FGI 342 (399)
T ss_dssp TTT-SS--HH-HHHHHHHHHHHHT-SHHHHHHHHHHHHHHHHHHHHHHHTT-EEGGG---S-SSSEEEEEGGG----GTS
T ss_pred CCcccCcchh-HHHHHHHHHhccc-CHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEC---CCCCCeEEEEecc----ccc
Confidence 1111111111 1222233333333 344689999999999999999987 8888653 3566788899863 367
Q ss_pred CHHHHHHHHHHCCCccCCCCCC------CCCEEEEeccC----CCCHHHHHH
Q 001989 919 EPEDVAKRLMDYGFHGPTMSWP------VPGTLMIEPTE----SESKSWTGI 960 (985)
Q Consensus 919 ~~~~v~~~L~~~Gi~~~~~~~p------~~~~lris~t~----~~t~eeId~ 960 (985)
++.++.++|.+.||.++...-| .+..|||...+ .-.++|+..
T Consensus 343 ~g~~a~~~Le~~gI~vnkn~iP~d~~~~~~sGlRlGT~~lT~rG~~e~dm~~ 394 (399)
T PF00464_consen 343 DGKEAEKALEEAGIIVNKNTIPGDRSPFVPSGLRLGTPALTRRGMKEEDMKE 394 (399)
T ss_dssp -HHHHHHHHHHTTEE-EEE--TTTSTTTT-SEEEEESHHHHHTT--HHHHHH
T ss_pred chHHHHHHHHhcCeeecccccCCCCCCCCCCEEEECCHHHHhCCCCHHHHHH
Confidence 8889999999999988632211 34789998764 345666665
|
The pyridoxal-P group is attached to a lysine residue around which the sequence is highly conserved in all forms of the enzyme []. The enzyme carries out interconversion of serine and glycine using PLP as the cofactor. SHMT catalyses the transfer of a hydroxymethyl group from N5, N10- methylene tetrahydrofolate to glycine, resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers and the mammalian enzyme forms a homotetramer [, ]. PLP dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalysed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), D-amino acid superfamily (fold type IV) and glycogen phophorylase family (fold type V) [, ]. In vertebrates, glycine hydroxymethyltransferase exists in a cytoplasmic and a mitochondrial form whereas only one form is found in prokaryotes.; GO: 0004372 glycine hydroxymethyltransferase activity, 0006544 glycine metabolic process, 0006563 L-serine metabolic process; PDB: 3GBX_B 3H7F_A 1YJS_A 2VMW_A 2W7H_A 2W7E_A 2VMY_B 2W7L_A 2VMZ_A 2VMS_A .... |
| >PLN03226 serine hydroxymethyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.9e-18 Score=201.17 Aligned_cols=302 Identities=18% Similarity=0.127 Sum_probs=195.4
Q ss_pred HHHHHHHHhCCCc----cceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHH------HHCCc--E-
Q 001989 637 LGEWLCTITGFDS----FSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATA------AMCGM--K- 703 (985)
Q Consensus 637 ~~~~la~l~G~~~----~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a------~~~G~--~- 703 (985)
+++..+++|+.+. .+++++||+.|+++++.++. +++|+|+..+..||.|..-+ ...+. .
T Consensus 85 ~~~~~~~~f~~~~~~~~~nv~~~SG~~AN~av~~aL~--------~pgD~Il~~d~~~gGhl~H~~~~~g~~~s~~~~~~ 156 (475)
T PLN03226 85 CQKRALEAFRLDPEKWGVNVQPLSGSPANFAVYTALL--------QPHDRIMGLDLPHGGHLSHGYQTDGKKISATSIYF 156 (475)
T ss_pred HHHHHHHHhCCCcceeEEecCcCchHHHHHHHHHHhC--------CCCCEEEECCCCcCcchhhhhhhcccccccceEEE
Confidence 4446778888776 45677999999987777653 47899998655455443221 11222 2
Q ss_pred -EEEEcCC-CCCCCCHHHHHHHHHhcCCCEEEEEEEcCCCccccccCHHHHHHHHHHcCCEEEEEccccccccCCC---C
Q 001989 704 -IVSVGTD-AKGNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLT---S 778 (985)
Q Consensus 704 -vv~v~~d-~~g~iD~e~L~~~i~~~~~~t~~Vvv~~pn~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~---~ 778 (985)
++.++++ ++|.+|+++|++++.++ ++++|++.. +.+|... |+++|.++|+++|++++||+||..++.+.. .
T Consensus 157 ~~~~y~~~~~~g~iD~d~Le~~l~~~--~pklIv~~~-S~~s~~~-D~a~i~~ia~~~ga~LlvD~AH~~Gli~~~~~~~ 232 (475)
T PLN03226 157 ESMPYRLDESTGLIDYDKLEKKAMLF--RPKLIIAGA-SAYPRDW-DYARMRKIADKVGALLMCDMAHISGLVAAQEAAS 232 (475)
T ss_pred EeeeeeecCCCCCcCHHHHHHHHhhc--CCeEEEEec-CcCCCcc-CHHHHHHHHHHcCCEEEEEchhhhCcccCCCCCC
Confidence 2233444 35899999999999743 455555533 4467766 899999999999999999999976654321 2
Q ss_pred CCccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCC---CCCCCCCCCCCCCCcchhhhHHHHH
Q 001989 779 PGYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGI---PAPEKSQPLGTIAAAPWGSALILPI 855 (985)
Q Consensus 779 pg~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~---~~~~~~~~~~~i~s~~~g~~~~~~~ 855 (985)
|. .++|++++++|||| +||.+|+|+++++..+.+.+.. +...+. ....+.... .+++ +...+++
T Consensus 233 p~-~~~Div~~t~hK~L------~GP~Gg~I~~~~~~~~~~~~g~-~~~~d~~~~i~~a~~~~~---~g~p--~~~~iaa 299 (475)
T PLN03226 233 PF-EYCDVVTTTTHKSL------RGPRGGMIFFRKGPKPPKGQGE-GAVYDYEDKINFAVFPGL---QGGP--HNHTIAA 299 (475)
T ss_pred CC-CCCeEEEecCcccc------cCCCceEEEEchhhcccccCCC-ccHHHHHHHhccccCCcc---CCCc--hHHHHHH
Confidence 32 26999999999999 4675688998876543332210 000000 000000011 1111 1112222
Q ss_pred HHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCcc
Q 001989 856 SYTYIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHG 934 (985)
Q Consensus 856 a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~ 934 (985)
..+.+..+...+++++.++..+++++|++.|.+ |+++...+ ...|.+++++.. .+++..++.+.|.+.||.+
T Consensus 300 l~aAl~~i~~~~~~~~~~~~~~na~~L~~~L~~~G~~l~~~~---t~~hi~lv~~~~----~gi~~~~~~~~L~~~~I~~ 372 (475)
T PLN03226 300 LAVALKQAMTPEFKAYQKQVKANAAALANRLMSKGYKLVTGG---TDNHLVLWDLRP----LGLTGSRVEKVLDLAHITL 372 (475)
T ss_pred HHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHhCCCEEEcCC---CCCCEEEEEccC----CCCCHHHHHHHHHHCCCEE
Confidence 335566665667777788999999999999987 77775432 224567788752 3678889999999999987
Q ss_pred CCCC-----CC-CCCEEEE----eccCCCCHHHHHHHHccCChhHHHH
Q 001989 935 PTMS-----WP-VPGTLMI----EPTESESKSWTGIVMLSSPSEKKLH 972 (985)
Q Consensus 935 ~~~~-----~p-~~~~lri----s~t~~~t~eeId~~~~~~~l~~~~~ 972 (985)
.... .| .+.++|+ -.+...+++|+++ +++.|.+++.
T Consensus 373 nk~~~p~~~~~~~~~giRiGt~~lt~~g~~~~d~~~--ia~~i~~~~~ 418 (475)
T PLN03226 373 NKNAVPGDSSALVPGGVRIGTPAMTSRGLVEKDFEK--VAEFLHRAVT 418 (475)
T ss_pred CCCCCCCCcccCCCCCcccCcHHHHHCCCCHHHHHH--HHHHHHHHHH
Confidence 6421 11 2467888 3446788999999 7777777776
|
|
| >PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=7.9e-18 Score=194.61 Aligned_cols=284 Identities=17% Similarity=0.124 Sum_probs=193.9
Q ss_pred hhHHHHHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEe
Q 001989 207 QGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVS 286 (985)
Q Consensus 207 qg~l~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v 286 (985)
.+....+.++++.+|+++|++. +.+++|+|.++.+++.++ . ++||+|++++..|.+....++ ..|++++.+
T Consensus 59 ~~~~~~~~~l~~~lA~~~g~~~--~~~~~g~t~a~~~al~~l-~--~~gd~Vlv~~~~h~s~~~~~~----~~G~~~~~v 129 (387)
T PRK09331 59 QIKKPPIADFHEDLAEFLGMDE--ARVTHGAREGKFAVMHSL-C--KKGDYVVLDGLAHYTSYVAAE----RAGLNVREV 129 (387)
T ss_pred cccChHHHHHHHHHHHHhCCCc--EEEeCCHHHHHHHHHHHh-c--CCCCEEEECCCchHHHHHHHH----HcCCEEEEE
Confidence 3344578899999999999975 667899998877776655 2 389999999999999987754 358888877
Q ss_pred Cc----------hhhhc-cC-------CCEeEEEEEcCC-CCeeeccHHHHHHHHHhCCcEEEEEecCccccCCC-CCCc
Q 001989 287 DL----------KDIDY-KS-------GDVCGVLVQYPG-TEGEVLDYGDFIKNAHANGVKVVMATDLLALTILK-PPGE 346 (985)
Q Consensus 287 ~~----------~~l~~-l~-------~~t~~V~v~~pn-~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~-~~~~ 346 (985)
+. +++++ +. +++++|++++|+ .+|.+.|+++|+++||++|++++||+ .+++|.+. +..+
T Consensus 130 ~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~lV~l~~~~~~tG~~~~l~~I~~la~~~g~~livD~-a~~~g~~~~~~~~ 208 (387)
T PRK09331 130 PKTGYPEYKITPEAYAEKIEEVKEETGKPPALALLTHVDGNYGNLADAKKVAKVAHEYGIPFLLNG-AYTVGRMPVDGKK 208 (387)
T ss_pred eCccCcCCCcCHHHHHHHHHHhhhccCCCCEEEEEECCCCCCcccccHHHHHHHHHHcCCEEEEEC-CcccCCcCCCHHH
Confidence 54 34444 43 378999999985 59999999999999999999999953 56777543 3467
Q ss_pred ccceEEEecC-ccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhH
Q 001989 347 LGADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQA 425 (985)
Q Consensus 347 ~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~ 425 (985)
+|+|++++++ |+|++ +|++||+++++++++.+... .+.|... ......+|++. .+
T Consensus 209 ~g~D~~~~s~~K~l~~-----~~~~G~l~~~~~~i~~~~~~----------~~~~~~~------~~~~~~~~~~~---~~ 264 (387)
T PRK09331 209 LGADFIVGSGHKSMAA-----SAPSGVLATTEEYADKVFRT----------SRKFGVK------EVELLGCTLRG---AP 264 (387)
T ss_pred cCCCEEEeeCcccccC-----CCCEEEEEECHHHHhhcccc----------cCCCccc------ceeeeceecCc---hH
Confidence 9999999998 76753 35689999999887765211 0111100 00001111111 23
Q ss_pred HHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcC-CCeEEcCC-CC-cceEEEecCC-----------HHHHHHH
Q 001989 426 LLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKL-GTVEVQGL-PF-FDTVKVKCAD-----------AHAIASA 491 (985)
Q Consensus 426 l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~-g~~~~~~~-~~-~~~~~~~~~~-----------~~~v~~~ 491 (985)
.+++++++ ..+- +-+ +..++.++++++++++|+++ | ++++.. +. .+.+.+..+. +.++.+.
T Consensus 265 ~~~~~aal--~~~~-~~~-~~~~~~~~~~~~l~~~L~~l~g-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (387)
T PRK09331 265 LVTLMASF--PHVV-ERV-KRWDEEVKKARWFVDELEKIEG-FKQLGEKPRNHDLMKFETPSFDEIAKKHKRRGFFLYEE 339 (387)
T ss_pred HHHHHHHH--HHHH-HHH-HHHHHHHHHHHHHHHHHhcCCC-EEEeccCcCcCCeEEEeCCchhHHhhhccccchhHHHH
Confidence 44444444 1111 112 34556678999999999999 6 998732 11 1122333221 3568999
Q ss_pred HHHcCceeeeecCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 492 AYKIEMNLRVVDSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 492 L~~~GI~~~~~~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
|.++||.......+.++...+..+|++|+++++++|++
T Consensus 340 L~~~gI~~~~~~~~~i~ri~~~g~t~~di~~l~~aL~~ 377 (387)
T PRK09331 340 LKKRGIHGIKPGATKEFKLSTYGLTWEQVEYVADAFKE 377 (387)
T ss_pred HHHcCceEEccCCceEEEEEeccCCHHHHHHHHHHHHH
Confidence 99999974322335566666666899999999999984
|
|
| >cd00611 PSAT_like Phosphoserine aminotransferase (PSAT) family | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.9e-18 Score=197.22 Aligned_cols=314 Identities=13% Similarity=0.079 Sum_probs=205.6
Q ss_pred CCCCcHHHHHHHHhCCcccccc---CCChhhHh---hhHHHHHHHHHHHHHHhcCCC-Ccceeeccc-hHHHHHHHHHHh
Q 001989 177 NTHVPPVILRNIMENPAWYTQY---TPYQAEIA---QGRLESLLNFQTMIADLTGLP-MSNASLLDE-GTAAAEAMAMCN 248 (985)
Q Consensus 177 ~~~~p~~v~~~i~~~~~~~t~~---~pyq~e~s---qg~l~~i~e~q~~ia~L~g~~-~~~~sl~~~-~ta~~ea~~~a~ 248 (985)
|..+|+.|.+++.. ++..| +-...+++ ....+.+.+.++.+++|+|++ ..++.++.| +|.+++++..++
T Consensus 7 p~~~p~~V~~a~~~---~~~~~~~~~rg~~~~~~r~~~~~~~~~~~r~~l~~l~~~~~~~~vvf~~gs~T~a~~~~~~~l 83 (355)
T cd00611 7 PAALPEEVLEQAQK---ELLDFNGLGMSVMEMSHRSKDFEAIVNEAESDLRELLNIPDNYKVLFLQGGATGQFAAVPLNL 83 (355)
T ss_pred CCCCCHHHHHHHHH---HHhhcccCCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCCchHHHHHHHHhc
Confidence 45678777655543 23222 11111123 444578899999999999984 456878877 999999888765
Q ss_pred hhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCch------h---hh-c-cCCCEeEEEEEc-CCCCeeeccHH
Q 001989 249 NIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDLK------D---ID-Y-KSGDVCGVLVQY-PGTEGEVLDYG 316 (985)
Q Consensus 249 ~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~~------~---l~-~-l~~~t~~V~v~~-pn~~G~v~di~ 316 (985)
....+++++|++....|.+ ..+++..|+++++++.+ + +. . ++++|++|.+++ .|.+|.+. .
T Consensus 84 ~~~~~~~~~i~~g~~~~~~-----~~~a~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~lV~~~h~~t~tG~~~--~ 156 (355)
T cd00611 84 LGDKGTADYVVTGAWSAKA-----AKEAKRYGGVVVIVAAKEEGKYTKIPDVETWDLAPDAAYVHYCSNETIHGVEF--D 156 (355)
T ss_pred CCCCCeEEEEECCHHHHHH-----HHHHHhcCCCcEEEecccccCCCCCCCHhhcCCCCCCCEEEEeCCcccccEEc--c
Confidence 2111256666653333322 22345678887776532 2 12 2 578899998876 58999973 2
Q ss_pred HHHHHHHhCCcEEEEEecCccccCC-CCCCcccceEEEecCccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCC
Q 001989 317 DFIKNAHANGVKVVMATDLLALTIL-KPPGELGADIVVGSAQRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSS 395 (985)
Q Consensus 317 ~I~~~a~~~galliV~a~~~~lg~l-~~~~~~GaDi~v~s~k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~ 395 (985)
++++.+|++++||+ ..++|.. .+..++|+ ++.++||+. |.||+|++++++++++++++.....
T Consensus 157 ---~i~~~~g~~~~VDa-~qs~g~~~idv~~~~~--~~ss~~K~l-----GP~G~g~l~~~~~~~~~~~~~~~~~----- 220 (355)
T cd00611 157 ---EVPDTGGVPLVADM-SSNILSRPIDVSKFGV--IYAGAQKNL-----GPAGVTVVIVRKDLLGKARKITPSM----- 220 (355)
T ss_pred ---eecccCCCeEEEEc-cccccCCCCCHHHhCE--EEeeccccc-----CCCceEEEEECHHHHhhcccCCCCc-----
Confidence 34455999999954 3456544 34456664 455566553 3467999999999998876532110
Q ss_pred CCcceeeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcc-hHHHHHHHHHHHHHHHHHHHhcC-CCeE-EcCC
Q 001989 396 GKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPE-GLKTIAQRVHGLAGTFALGLKKL-GTVE-VQGL 472 (985)
Q Consensus 396 g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~-Gl~~i~~~~~~~a~~l~~~L~~~-g~~~-~~~~ 472 (985)
+.+.+.... ....+|+|+ .+++++.+++ .++..+ |++++.+|..+++++++++|+++ | +. ...+
T Consensus 221 ------~~~~~~~~~-~~~~~Tpn~---~~i~~L~aal--~~l~~~gg~e~i~~~~~~l~~~l~~~l~~~~g-l~~~~~~ 287 (355)
T cd00611 221 ------LNYKTHADN-NSLYNTPPT---FAIYMMGLVL--KWLKEQGGVEAMEKRNRQKAQLLYDTIDNSNG-FYRGPVD 287 (355)
T ss_pred ------ccHHHHHhc-CCCCCCChH---HHHHHHHHHH--HHHHHcCCHHHHHHHHHHHHHHHHHHHHhCcc-ccccCCC
Confidence 001000000 012478887 6788888887 677777 79999999999999999999999 6 63 2211
Q ss_pred --CCcc-eEEEecCC---HHHHHHHHHHcCceeeee--cCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 473 --PFFD-TVKVKCAD---AHAIASAAYKIEMNLRVV--DSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 473 --~~~~-~~~~~~~~---~~~v~~~L~~~GI~~~~~--~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
.... .++|+.++ ..++.+.+.++|+..... ..+.+|+|+..+||+||||+|+++|++
T Consensus 288 ~~~rs~~vvsf~~~~~~l~~~~~~~~~r~G~~~~~~~~~~g~vR~S~~~~nt~edi~~l~~al~~ 352 (355)
T cd00611 288 KRARSRMNVPFRLGKEELEKEFLKEAEAAGMIGLKGHRSVGGIRASIYNALSLEGVQALADFMKE 352 (355)
T ss_pred HHHcCceEEEEEcCChhhhHHHHHHHHHCCCcccCCCcccCeEEEEccCCCCHHHHHHHHHHHHH
Confidence 1232 36777665 345556777789975433 247899999999999999999999974
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major group in this CD corresponds to phosphoserine aminotransferase (PSAT). PSAT is active as a dimer and catalyzes the conversion of phosphohydroxypyruvate to phosphoserine. |
| >PRK05937 8-amino-7-oxononanoate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.8e-18 Score=197.24 Aligned_cols=315 Identities=17% Similarity=0.157 Sum_probs=200.4
Q ss_pred ccceecCCCCCCCCCcHHHHHHHHhCCcccc--ccCCChhhHhhhHHHHHHHHHHHHHHhcCCCCcceeeccchHHHHHH
Q 001989 166 VYKSFIGMGYYNTHVPPVILRNIMENPAWYT--QYTPYQAEIAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEA 243 (985)
Q Consensus 166 ~~~~~lG~g~y~~~~p~~v~~~i~~~~~~~t--~~~pyq~e~sqg~l~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea 243 (985)
..++|||....|...|+++. ++..-..-+. ..+...++...|..+.+.++++.+|+++|.+. +.++++|+.+..+
T Consensus 10 ~s~~YL~~~~~~~~~~~~~~-~~~~~~~~~p~~~~~~~gs~~~~g~~~~~~~~e~~la~~~~~~~--~l~~~sG~~a~~~ 86 (370)
T PRK05937 10 VTNDFLGFSRSDTLVHEVEK-RYRLYCRQFPHAQLGYGGSRAILGPSSLLDDLEHKIAHFHGAPE--AFIVPSGYMANLG 86 (370)
T ss_pred ECCCccCCCCCHHHHHHHHH-HHHHhccccCCCCCCCCCcCcccCChHHHHHHHHHHHHHhCCCe--EEEECChHHHHHH
Confidence 45678888876666666553 3332110001 12445667888999999999999999999975 3455666544433
Q ss_pred HHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCchhhhc-cC------CCEeEEEEEcC-CCCeeeccH
Q 001989 244 MAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDLKDIDY-KS------GDVCGVLVQYP-GTEGEVLDY 315 (985)
Q Consensus 244 ~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~~~l~~-l~------~~t~~V~v~~p-n~~G~v~di 315 (985)
+...+ .++++.|+++..+|+++...++.. ....+.+.+.|+++|++ ++ +++.+|++.++ |++|.+.|+
T Consensus 87 ~~~~~---~~~~d~ii~d~~~H~sv~~~~~~~-~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~v~~v~s~~G~i~pl 162 (370)
T PRK05937 87 LCAHL---SSVTDYVLWDEQVHISVVYSLSVI-SGWHQSFRHNDLDHLESLLESCRQRSFGRIFIFVCSVYSFKGTLAPL 162 (370)
T ss_pred HHHHh---CCCCCEEEEEhhhhHHHHHHHHHc-CCceEEecCCCHHHHHHHHHhhhccCCCcEEEEEecCCCCCCCccCH
Confidence 32222 136788999999999999998753 22334444567777776 53 34667777776 689999999
Q ss_pred HHHHHHHHhCCcEEEEEecCccccCCCCCC-----cccc---eEEEecC-ccccccCCCCCCcEEEEEEchhhHhcCCCc
Q 001989 316 GDFIKNAHANGVKVVMATDLLALTILKPPG-----ELGA---DIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGR 386 (985)
Q Consensus 316 ~~I~~~a~~~galliV~a~~~~lg~l~~~~-----~~Ga---Di~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~ 386 (985)
++|.++||++|++++|| +.++.|.+...+ .||+ |+++.+. |.+| ++|+|+++.++ ....+..
T Consensus 163 ~eI~~l~~~~~~~livD-ea~~~G~~g~~g~g~~~~~~~~~~~~~~~tlsK~~g------~~G~~vl~~~~-~~~~~~~- 233 (370)
T PRK05937 163 EQIIALSKKYHAHLIVD-EAHAMGIFGDDGKGFCHSLGYENFYAVLVTYSKALG------SMGAALLSSSE-VKQDLML- 233 (370)
T ss_pred HHHHHHHHHcCCEEEEE-CCccccccCCCCCchHHhhCCCCCcEEEEechhhhh------cCceEEEcCHH-HHHHHHH-
Confidence 99999999999999994 355666554332 3553 3556665 6553 34567776543 2222100
Q ss_pred eeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCC
Q 001989 387 IVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGT 466 (985)
Q Consensus 387 ~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~ 466 (985)
+..+.+++.+ . ++....++.+++ .++..+| +.+.+++.++.+++.+.|...+
T Consensus 234 --------------------~~~~~~~s~~-~---~~~~~~a~~aal--~~l~~~~-~~~~~~l~~l~~~l~~~l~~~~- 285 (370)
T PRK05937 234 --------------------NSPPLRYSTG-L---PPHLLISIQVAY--DFLSQEG-ELARKQLFRLKEYFAQKFSSAA- 285 (370)
T ss_pred --------------------hCCCCeecCC-C---CHHHHHHHHHHH--HHHHhCc-HHHHHHHHHHHHHHHHhcCCCC-
Confidence 0001112212 1 123344444554 4444445 4567788889999998886542
Q ss_pred eEEcCCCCcceEEEecCCHHHHHHHHHHcCceeeee---cCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 467 VEVQGLPFFDTVKVKCADAHAIASAAYKIEMNLRVV---DSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~v~~~L~~~GI~~~~~---~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
. .. ...+.+......++.+.|.++||.++.. ..+.+|+|++.+||+||||+++++|.+
T Consensus 286 ~----~~-~~~i~~~~~~~~~~~~~L~~~gi~v~~~~~~~~~~iRis~~~~~t~edid~l~~~L~~ 346 (370)
T PRK05937 286 P----GC-VQPIFLPGISEQELYSKLVETGIRVGVVCFPTGPFLRVNLHAFNTEDEVDILVSVLAT 346 (370)
T ss_pred C----CC-EEEEEeCChhHHHHHHHHHHCCeeEEeeCCCCCCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 1 01 1123332112678899999999988643 146899999999999999999999974
|
|
| >PRK00011 glyA serine hydroxymethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.5e-18 Score=200.96 Aligned_cols=295 Identities=20% Similarity=0.196 Sum_probs=192.4
Q ss_pred HHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHH-----HHHCCcEEEEEcCCC
Q 001989 637 LGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPAT-----AAMCGMKIVSVGTDA 711 (985)
Q Consensus 637 ~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~-----a~~~G~~vv~v~~d~ 711 (985)
+++.+++++|.+...+.+++|++|+..++.++ . +++|+|+++...|+.+... ....|++++.+++++
T Consensus 76 ~~~~la~~~g~~~~~i~~~sgt~al~~~l~~l---~-----~~gd~Vl~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 147 (416)
T PRK00011 76 AIDRAKELFGAEYANVQPHSGSQANAAVYFAL---L-----KPGDTILGMDLAHGGHLTHGSPVNFSGKLYNVVSYGVDE 147 (416)
T ss_pred HHHHHHHHhCCCceeeecCCchHHHHHHHHHh---c-----CCCCEEEEeccccCCccccccccccccceeeEeecCcCc
Confidence 56689999999876666677887765444333 1 4789999998888765322 123467888888874
Q ss_pred -CCCCCHHHHHHHHHhcCCCEEEEEEEcCCCccccccCHHHHHHHHHHcCCEEEEEccccccccCC---CCCCccCCcEE
Q 001989 712 -KGNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGL---TSPGYIGADVC 787 (985)
Q Consensus 712 -~g~iD~e~L~~~i~~~~~~t~~Vvv~~pn~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l---~~pg~~g~Di~ 787 (985)
++.+|++++++++++ .++++|+++.++ +|... |+++|+++|+++|+++++|++|..+.... ..+-. ++|++
T Consensus 148 ~~~~~d~~~l~~~i~~--~~~k~v~~~~~~-~~~~~-~~~~I~~la~~~~~~livD~a~~~g~~~~g~~~~~~~-~~di~ 222 (416)
T PRK00011 148 ETGLIDYDEVEKLALE--HKPKLIIAGASA-YSRPI-DFKRFREIADEVGAYLMVDMAHIAGLVAAGVHPSPVP-HADVV 222 (416)
T ss_pred ccCCcCHHHHHHHHHh--cCCCEEEECCCc-CCCcc-CHHHHHHHHHHcCCEEEEECcchhcccccCccCCCCC-CCcEE
Confidence 588999999999972 367888876543 46665 89999999999999999999986443211 12223 68999
Q ss_pred EeCCcccccccCCCCCCceEEEEEc-ccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHH
Q 001989 788 HLNLHKTFCIPHGGGGPGMGPIGVK-KHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSK 866 (985)
Q Consensus 788 ~~s~hK~l~~p~g~GGPg~G~i~~~-~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~e 866 (985)
++|+||+| +||.+|+++++ +++.+.+..... .. ...+ +. ....++ .+..+..+..+
T Consensus 223 ~~S~~K~l------~g~~gg~i~~~~~~~~~~l~~~~~------------~~--~~~~-~~-~~~~aa-~~~a~~~~~~~ 279 (416)
T PRK00011 223 TTTTHKTL------RGPRGGLILTNDEELAKKINSAVF------------PG--IQGG-PL-MHVIAA-KAVAFKEALEP 279 (416)
T ss_pred EecCCcCC------CCCCceEEEeCCHHHHHHHHHHhC------------cc--ccCC-cc-HHHHHH-HHHHHHHHHhh
Confidence 99999987 35777788875 455544321100 00 0011 00 111111 12222233345
Q ss_pred HHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCC------C
Q 001989 867 GLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMS------W 939 (985)
Q Consensus 867 Gl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~------~ 939 (985)
++.+..++..++++++++.|++ ++++.. . +...+.+.+.+++ .+.+..++.+.|.++||.+.... .
T Consensus 280 ~~~~~~~~~~~~~~~l~~~L~~~g~~~~~-~--~~~~~~~~i~~~~----~~~~~~~~~~~L~~~GI~v~~~~~p~~~~~ 352 (416)
T PRK00011 280 EFKEYAQQVVKNAKALAEALAERGFRVVS-G--GTDNHLVLVDLRS----KGLTGKEAEAALEEANITVNKNAVPFDPRS 352 (416)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhCCCeeee-c--CCCCeEEEEeCcc----cCCCHHHHHHHHHHcCcEEccCcCCCCCCC
Confidence 6777888899999999999987 555432 1 1112334455531 23467789999999999876321 1
Q ss_pred C-CCCEEEEeccC----CCCHHHHHHHHccCChhHHHHhhcc
Q 001989 940 P-VPGTLMIEPTE----SESKSWTGIVMLSSPSEKKLHRLKM 976 (985)
Q Consensus 940 p-~~~~lris~t~----~~t~eeId~~~~~~~l~~~~~~~~~ 976 (985)
| .+..+|++... ..|++|+++ +++.|++++...+.
T Consensus 353 ~~~~~~~Ri~~~~~~~~~~t~~di~~--l~~~l~~~~~~~~~ 392 (416)
T PRK00011 353 PFVTSGIRIGTPAITTRGFKEAEMKE--IAELIADVLDNPDD 392 (416)
T ss_pred CCCCCceEecCHHHhhcCcCHHHHHH--HHHHHHHHHhccCc
Confidence 1 24679996533 467999999 78888888765443
|
|
| >TIGR03246 arg_catab_astC succinylornithine transaminase family | Back alignment and domain information |
|---|
Probab=99.81 E-value=5.5e-18 Score=196.45 Aligned_cols=322 Identities=15% Similarity=0.126 Sum_probs=204.8
Q ss_pred ccccccccCCCccccccccccccccccCCCCchhhhhhHHHHHHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHH
Q 001989 592 IPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAY 671 (985)
Q Consensus 592 ~~lG~~t~~~~~~~~~~~~~~~~f~~~~p~~p~e~~~G~~~~~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~ 671 (985)
.+||++++.+..+...+..........++ .....++++.|+++++.+ ..++.+||++|++++++++|.|
T Consensus 47 ~~lGh~~p~v~~a~~~~~~~~~~~~~~~~----------~~~~~~la~~L~~~~~~~-~~~f~~SGseA~e~Alk~ar~~ 115 (397)
T TIGR03246 47 NALGHAHPELVKALIEQADKLWHIGNGYT----------NEPVLRLAKKLVDATFAD-KVFFCNSGAEANEAALKLARRY 115 (397)
T ss_pred ccCCCCCHHHHHHHHHHHHhcccccCccC----------CHHHHHHHHHHHhhCCCC-EEEEeCCcHHHHHHHHHHHHHH
Confidence 46888777666554444321111111111 123457889999998765 4577899999999999999987
Q ss_pred HHhcCCCCCCEEEE-cCCCCcccHHHHHHCCc------------EEEEEcCCCCCCCCHHHHHHHHHhcCCCEEEEEEEc
Q 001989 672 HKARGDHHRNVCII-PVSAHGTNPATAAMCGM------------KIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTY 738 (985)
Q Consensus 672 ~~~~g~~~~~~IIv-~~~~Hg~~~~~a~~~G~------------~vv~v~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~ 738 (985)
...++..++++||. ...+||.........+. .+..+|. .|+++++++++ +++++|+++.
T Consensus 116 ~~~~~~~~r~~ii~~~~~yHG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~l~~~l~---~~~aavi~Ep 187 (397)
T TIGR03246 116 ALDKHGADKSEIVAFKNSFHGRTLFTVSVGGQPKYSQGFAPLPGGIKHAPY-----NDLAAAKALIS---DKTCAVIVEP 187 (397)
T ss_pred HHhcCCCCCCEEEEECCCcCCccHHHHHhcCCcccccCCCCCCCceEEeCC-----CCHHHHHHHhc---cCeEEEEEec
Confidence 54332223456665 66789987655443331 2344554 38999999997 7899999986
Q ss_pred CC-Cccccc---cCHHHHHHHHHHcCCEEEEEccccccccCCCCCCc--------cCCcEEEeCCcccccccCCCCCCce
Q 001989 739 PS-THGVYE---EGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGY--------IGADVCHLNLHKTFCIPHGGGGPGM 806 (985)
Q Consensus 739 pn-~~G~i~---~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~--------~g~Di~~~s~hK~l~~p~g~GGPg~ 806 (985)
++ ..|++. .++++|.++|+++|+++|+|++|. +. .+.|. ..+|++++ .|.+ + ||..+
T Consensus 188 i~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~t-G~---Gr~G~~~a~~~~gv~pDi~t~--~K~l----g-gG~pi 256 (397)
T TIGR03246 188 IQGEGGVVPADPAFLKGLRELCDRHNALLIFDEVQT-GV---GRTGELYAYMHYGVTPDILTS--AKAL----G-GGFPI 256 (397)
T ss_pred ccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhh-cC---CccccchhhhhcCCCCCEEEe--ehhh----h-CCcce
Confidence 54 466553 259999999999999999999872 33 22222 13688754 3766 3 45667
Q ss_pred EEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHh
Q 001989 807 GPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRL 886 (985)
Q Consensus 807 G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L 886 (985)
|.+++++++.+.+.... . .+++.|++..++++.+.|..+..+ +..++..++.++++++|
T Consensus 257 gav~~~~~i~~~~~~~~---------------~---~~t~~~~p~~~aaa~a~l~~~~~~---~l~~~~~~~~~~l~~~L 315 (397)
T TIGR03246 257 GAMLTTTEIAAHLKVGT---------------H---GTTYGGNPLACAVAGKVLDLVNTP---ELLAGVKQRHDLFVDGL 315 (397)
T ss_pred eEEEEcHHHHHhccCCC---------------c---CCCCCCCHHHHHHHHHHHHHHhhc---cHHHHHHHHHHHHHHHH
Confidence 88888887765553210 0 011223555566667777776543 34556778889999988
Q ss_pred hc-c--CCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCCCCCCCEEEEeccCCCCHHHHHHHHc
Q 001989 887 EK-H--YPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKSWTGIVML 963 (985)
Q Consensus 887 ~~-g--~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~~p~~~~lris~t~~~t~eeId~~~~ 963 (985)
++ . +.+.........+ +.+.+.. ........+++.|.++|+.+.... .+.+|++|+..+|++|||+ +
T Consensus 316 ~~l~~~~~~~~~vrg~G~~--~~i~~~~---~~~~~~~~~~~~l~~~Gv~~~~~g---~~~lR~~p~~~~t~~~i~~--~ 385 (397)
T TIGR03246 316 EKINARYNVFSEIRGKGLL--IGAVLTE---AYQGKAKQFVNAAAEEGVIALIAG---PNVVRFAPSLVISDDDIDE--G 385 (397)
T ss_pred HHHHhcCCCeEeeecCceE--EEEEEcC---chhhHHHHHHHHHHHCCeEEeecC---CCEEEEeCCCCCCHHHHHH--H
Confidence 76 2 2221111100111 2233210 001235689999999999975432 3789999999999999999 7
Q ss_pred cCChhHHHHhh
Q 001989 964 SSPSEKKLHRL 974 (985)
Q Consensus 964 ~~~l~~~~~~~ 974 (985)
++.|++++.++
T Consensus 386 ~~~l~~~l~~~ 396 (397)
T TIGR03246 386 LARFERAIEQV 396 (397)
T ss_pred HHHHHHHHHHh
Confidence 78888887653
|
Members of the seed alignment for this protein family are the enzyme succinylornithine transaminase (EC 2.6.1.81), which catalyzes the third of five steps in arginine succinyltransferase (AST) pathway, an ammonia-releasing pathway of arginine degradation. All seed alignment sequences are found within arginine succinyltransferase operons, and all proteins that score above 820.0 bits should function as succinylornithine transaminase. However, a number of sequences extremely closely related in sequence, found in different genomic contexts, are likely to act in different biological processes and may act on different substrates. This model is desigated subfamily rather than equivalog, pending further consideration, for this reason. |
| >cd00616 AHBA_syn 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn) | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.5e-18 Score=196.11 Aligned_cols=299 Identities=15% Similarity=0.077 Sum_probs=190.0
Q ss_pred HHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcCCC-C
Q 001989 634 FNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDA-K 712 (985)
Q Consensus 634 ~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~d~-~ 712 (985)
..++++.+++++|.+.. ++.++|++|++.++.+++ ..++++||++...|..+...+...|++++.+++++ +
T Consensus 20 ~~~~~~~la~~~~~~~~-~~~~sgt~al~~~l~~l~-------~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 91 (352)
T cd00616 20 VREFEKAFAEYLGVKYA-VAVSSGTAALHLALRALG-------IGPGDEVIVPSFTFVATANAILLLGATPVFVDIDPDT 91 (352)
T ss_pred HHHHHHHHHHHhCCCeE-EEECCHHHHHHHHHHHcC-------CCCCCEEEeCCcchHHHHHHHHHcCCeEEEEecCCCc
Confidence 56889999999998653 445678877755554431 13678999999888777777788999999999987 6
Q ss_pred CCCCHHHHHHHHHhcCCCEEEEEEEcCCCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCC-CCccCCcEEEeCC
Q 001989 713 GNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTS-PGYIGADVCHLNL 791 (985)
Q Consensus 713 g~iD~e~L~~~i~~~~~~t~~Vvv~~pn~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~-pg~~g~Di~~~s~ 791 (985)
+.+|+++|+++++ +++++|++++ .+|... |+++|.++|+++|+++++|++|..+...... .+.+ .|+.++|+
T Consensus 92 ~~~d~~~l~~~i~---~~~~~v~~~~--~~G~~~-~~~~i~~l~~~~~i~li~D~a~~~g~~~~~~~~~~~-~d~~~~S~ 164 (352)
T cd00616 92 YNIDPELIEAAIT---PRTKAIIPVH--LYGNPA-DMDAIMAIAKRHGLPVIEDAAQALGATYKGRKVGTF-GDAGAFSF 164 (352)
T ss_pred CCcCHHHHHHhcC---cCCeEEEEEC--CCCCcC-CHHHHHHHHHHcCCeEEEECCCCCCCeECCEEcccC-cceeEEcC
Confidence 8899999999996 7899999876 468887 8999999999999999999999644321111 1222 58888886
Q ss_pred c--ccccccCCCCCCceEEEEEc-ccccCcCCCCc-cccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHH
Q 001989 792 H--KTFCIPHGGGGPGMGPIGVK-KHLAPFLPSHP-VVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKG 867 (985)
Q Consensus 792 h--K~l~~p~g~GGPg~G~i~~~-~~l~~~lp~~~-~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eG 867 (985)
| |+++ ++.+|+++++ +++.+.+.... .+...+ .+.....+.+... ......++. .....++
T Consensus 165 ~~~K~~~------~~~gg~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~--~~~~~~aa~-----~~~~l~~ 229 (352)
T cd00616 165 HPTKNLT------TGEGGAVVTNDEELAERARLLRNHGRDRD--RFKYEHEILGYNY--RLSEIQAAI-----GLAQLEK 229 (352)
T ss_pred CCCCCCc------ccCceEEEECCHHHHHHHHHHHHcCCCCC--CCccccceeeecc--CcCHHHHHH-----HHHHHHh
Confidence 6 9872 2334666665 34443221100 010000 0000000101100 001111111 1122345
Q ss_pred HHHHHHHHHHHHHHHHHHhhc--cCCeeecCCC-CceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCCCCC---
Q 001989 868 LTEASKIAILNANYMAKRLEK--HYPILFRGVN-GTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPV--- 941 (985)
Q Consensus 868 l~~~~~~~~~~a~~l~~~L~~--g~~l~~~~~~-~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~~p~--- 941 (985)
+.+..++..++++++++.|.+ ++++....+. ....+.+.+.++. ..+.+..++.+.|.++||.++....|.
T Consensus 230 ~~~~~~~~~~~~~~~~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~v~~~L~~~gI~~~~~~~~~~~~ 306 (352)
T cd00616 230 LDEIIARRREIAERYKELLADLPGIRLPDVPPGVKHSYHLYVIRLDP---EAGESRDELIEALKEAGIETRVHYPPLHHQ 306 (352)
T ss_pred hHHHHHHHHHHHHHHHHHhcCCCCccCCCCCCCCceeeEEEEEEECC---cCCCCHHHHHHHHHHCCCCeeeecCccccC
Confidence 566667778899999999986 4444322111 1122334444431 014578899999999999765322110
Q ss_pred ---------------------CCEEEEeccCCCCHHHHHHHHccCCh
Q 001989 942 ---------------------PGTLMIEPTESESKSWTGIVMLSSPS 967 (985)
Q Consensus 942 ---------------------~~~lris~t~~~t~eeId~~~~~~~l 967 (985)
.+.+|++++.++|++||++ ++++|
T Consensus 307 ~~~~~~~~~~~~~~~~a~~~~~~~l~l~~~~~~t~~di~~--i~~~l 351 (352)
T cd00616 307 PPYKKLLGYPPGDLPNAEDLAERVLSLPLHPSLTEEEIDR--VIEAL 351 (352)
T ss_pred HhhhhccCCCcCCChHHHHHHhCeEEccCCCCCCHHHHHH--HHHHh
Confidence 2689999999999999999 55554
|
AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein |
| >COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.8e-18 Score=196.06 Aligned_cols=332 Identities=14% Similarity=0.124 Sum_probs=215.0
Q ss_pred ccccccccccCCCccccccccc-----cccccccCCCCchhhhhhHHHHHHHHHHHHHHHhCCCc--cc-eecC-cHHHH
Q 001989 590 SMIPLGSCTMKLNATTEMMPVT-----WPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFDS--FS-LQPN-AGAAG 660 (985)
Q Consensus 590 ~~~~lG~~t~~~~~~~~~~~~~-----~~~f~~~~p~~p~e~~~G~~~~~~e~~~~la~l~G~~~--~~-~~~~-sGa~a 660 (985)
..+.||.|.+.++...+..... .+.. .|+| .+|..++.+.+.+++.+.+|.+. .. +..+ ++++|
T Consensus 29 ~vi~l~iG~Pd~~~p~~i~~a~~~a~~~~~~-~Y~~------~~G~~~LReaia~~~~~~~~~~~~~~~eiivt~Ga~~a 101 (393)
T COG0436 29 DVIDLSIGEPDFPTPEHIIEAAIEALEEGGT-HYTP------SAGIPELREAIAEKYKRRYGLDVDPEEEIIVTAGAKEA 101 (393)
T ss_pred CEEEeCCCCCCCCCCHHHHHHHHHHHhcccC-CCCC------CCCCHHHHHHHHHHHHHHhCCCCCCCCeEEEeCCHHHH
Confidence 3677888877666654444321 1112 3443 47888888888888888888543 23 5544 44556
Q ss_pred HHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcCC---CCCCCCHHHHHHHHHhcCCCEEEEEEE
Q 001989 661 EYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTD---AKGNINIEELRKAAEANRDNLSTLMVT 737 (985)
Q Consensus 661 ~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~d---~~g~iD~e~L~~~i~~~~~~t~~Vvv~ 737 (985)
...+++++. ++||+||++++.+..+.....+.|.+++.++++ .++.+|+++|+++++ ++|++|+++
T Consensus 102 l~~~~~a~~--------~pGDeVlip~P~Y~~y~~~~~~~gg~~v~v~l~~~~~~f~~d~~~l~~~i~---~ktk~i~ln 170 (393)
T COG0436 102 LFLAFLALL--------NPGDEVLIPDPGYPSYEAAVKLAGGKPVPVPLDEEENGFKPDLEDLEAAIT---PKTKAIILN 170 (393)
T ss_pred HHHHHHHhc--------CCCCEEEEeCCCCcCHHHHHHhcCCEEEEEeCCcCccCCcCCHHHHHhhcC---ccceEEEEe
Confidence 654444432 588999999999988888899999999999974 368999999999998 799999999
Q ss_pred cC-CCccccc--cCHHHHHHHHHHcCCEEEEEccccc-cccC--CCCCCc----cCCcEEEeCCcccccccCCCCCCceE
Q 001989 738 YP-STHGVYE--EGIDEICKIIHDNGGQVYMDGANMN-AQVG--LTSPGY----IGADVCHLNLHKTFCIPHGGGGPGMG 807 (985)
Q Consensus 738 ~p-n~~G~i~--~di~eI~~la~~~galliVD~a~~~-~~~~--l~~pg~----~g~Di~~~s~hK~l~~p~g~GGPg~G 807 (985)
+| |+||.+- ..+++|+++|+++|++++.|.++.. ...+ ...... ...-|.+.|++|+|+++ |+++|
T Consensus 171 ~P~NPTGav~~~~~l~~i~~~a~~~~i~ii~DEiY~~l~yd~~~~~s~~~~~~~~~~~i~i~s~SK~~~mt----GwRvG 246 (393)
T COG0436 171 SPNNPTGAVYSKEELKAIVELAREHDIIIISDEIYEELVYDGAEHPSILELAGARDRTITINSFSKTYGMT----GWRIG 246 (393)
T ss_pred CCCCCcCcCCCHHHHHHHHHHHHHcCeEEEEehhhhhcccCCCCcCCHhhcCCCcceEEEEeccccccccc----cccee
Confidence 99 5799985 3689999999999999999998731 1111 111111 12236677889998764 89999
Q ss_pred EEEEc-ccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhc-HHHHHHHHHHHHHHHHHHHHH
Q 001989 808 PIGVK-KHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMG-SKGLTEASKIAILNANYMAKR 885 (985)
Q Consensus 808 ~i~~~-~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg-~eGl~~~~~~~~~~a~~l~~~ 885 (985)
+++++ +++.+.+. .+. ....+|.+..+|.+ +.++|..-. .+.++...+...++++.+.++
T Consensus 247 ~~v~~~~~l~~~~~-~~~-------------~~~~~~~~~~~Q~a----a~~aL~~~~~~~~~~~~~~~~~~rrd~l~~~ 308 (393)
T COG0436 247 WVVGPPEELIAALR-KLK-------------SYLTSCAPTPAQYA----AIAALNGPQSDEVVEEMREEYRERRDLLVEA 308 (393)
T ss_pred EeecChHHHHHHHH-HHH-------------HhcccCCCHHHHHH----HHHHhcCccchHHHHHHHHHHHHHHHHHHHH
Confidence 99998 55554432 000 01112221122321 222222211 123444445678888999999
Q ss_pred hhc--cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHC-CCccC-CCCCC---CCCEEEEeccCCCCHHHH
Q 001989 886 LEK--HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDY-GFHGP-TMSWP---VPGTLMIEPTESESKSWT 958 (985)
Q Consensus 886 L~~--g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~-Gi~~~-~~~~p---~~~~lris~t~~~t~eeI 958 (985)
|.+ ++.+.. .+.+.++ +.++++. ..+..+++++|.++ |+.+. +..|. ..+.+|+|..... +++
T Consensus 309 l~~~~g~~~~~-~p~Ga~Y--~~~~i~~-----~~d~~~f~~~Ll~~~gV~v~PG~~Fg~~~g~~~vRis~~~~~--~~l 378 (393)
T COG0436 309 LNEIGGLSVVK-PPEGAFY--LFPKIPE-----LLDSEEFAKKLLEEAGVAVVPGSGFGEPPGEGYVRLSLATSE--ETL 378 (393)
T ss_pred HHhcCCeeecc-CCCeeEE--EEeecCC-----CCCHHHHHHHHHHhCCEEEecccccCCCCCCCeEEEEEecCH--HHH
Confidence 986 355432 1334333 3355541 25788999998876 78753 33343 3479999986544 777
Q ss_pred HHHHccCChhHHHHh
Q 001989 959 GIVMLSSPSEKKLHR 973 (985)
Q Consensus 959 d~~~~~~~l~~~~~~ 973 (985)
++ .++.+.+.+.+
T Consensus 379 ~~--a~~rl~~~~~~ 391 (393)
T COG0436 379 EE--ALRRLARFLAE 391 (393)
T ss_pred HH--HHHHHHHHHHh
Confidence 77 66667666654
|
|
| >TIGR01364 serC_1 phosphoserine aminotransferase | Back alignment and domain information |
|---|
Probab=99.81 E-value=5e-18 Score=192.69 Aligned_cols=282 Identities=12% Similarity=0.058 Sum_probs=193.7
Q ss_pred HHHHHHHHHHHHhcCCCC-cceeeccc-hHHHHHHHHHHhhhhcCCCCEEEE-cCCCChhHHHHHHHhhcCCCeEEEEeC
Q 001989 211 ESLLNFQTMIADLTGLPM-SNASLLDE-GTAAAEAMAMCNNIQKGKKKTFII-ASNCHPQTIDICITRADGFDIKVVVSD 287 (985)
Q Consensus 211 ~~i~e~q~~ia~L~g~~~-~~~sl~~~-~ta~~ea~~~a~~~~~~~g~~Vlv-~~~~H~s~~~~~~~~a~~~gi~v~~v~ 287 (985)
+.+.+.++.+.+++|.+. ..+.++.| ||.++|++...+. . +++++++ ..+.+..-. ...++..|+ +..+.
T Consensus 37 ~~~~~~~~~l~~l~~~~~~~~v~~~~gsgT~a~ea~~~nl~-~--~~~~~l~i~~G~fg~r~---~~~a~~~g~-~~~~~ 109 (349)
T TIGR01364 37 AVANEAESDLRELLNIPDNYEVLFLQGGATGQFAAVPLNLL-A--EGKVADYIVTGAWSKKA---AKEAKKYGV-VNVVA 109 (349)
T ss_pred HHHHHHHHHHHHHhCCCCCceEEEEcCCchHHHHHHHHhcC-C--CCCeEEEEECCHHHHHH---HHHHHHhCC-cEEEe
Confidence 788889999999999743 35667765 9999999887652 2 5677654 444443222 333556676 44433
Q ss_pred ---------chhhhc--cCCCEeEEEEEc-CCCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCC-CCCcccceEEEe
Q 001989 288 ---------LKDIDY--KSGDVCGVLVQY-PGTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILK-PPGELGADIVVG 354 (985)
Q Consensus 288 ---------~~~l~~--l~~~t~~V~v~~-pn~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~-~~~~~GaDi~v~ 354 (985)
..+++. ++++++.|.+++ .|++|+..| ++++.+|++++||+ ..++|... +..+| |++++
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~v~~th~ETstGv~~~-----~l~~~~~~l~iVDa-vss~g~~~id~~~~--d~~~~ 181 (349)
T TIGR01364 110 SGKEGNYTKIPDPSTWEISEDAAYVHYCANETIHGVEFR-----ELPDVKNAPLVADM-SSNILSRPIDVSKF--GLIYA 181 (349)
T ss_pred ccccCCCCCCCCHHhcCCCCCCCEEEEcCCCCcccEecc-----eecccCCCeEEEEc-cccccCccCCHHHc--cEEEE
Confidence 123343 456889998876 589999876 66777899999954 34555432 33455 59999
Q ss_pred cCccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHH
Q 001989 355 SAQRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMY 434 (985)
Q Consensus 355 s~k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~ 434 (985)
++||+ +|.||+|++++++++++++++.... .+.+....+. ..-.+|+|+ ..++++.+++
T Consensus 182 ssqK~-----lgP~Glg~l~~s~~~~~~~~~~~~~-----------~~~~~~~~~~-~~~~~Tp~~---~~i~al~~al- 240 (349)
T TIGR01364 182 GAQKN-----IGPAGLTVVIVRKDLLGRASRITPS-----------MLNYKIHAEN-DSMYNTPPT---FAIYVSGLVF- 240 (349)
T ss_pred ecccc-----cCCCceEEEEECHHHHhhcccCCCC-----------cchHHHHHhc-CCCCCCCcH---HHHHHHHHHH-
Confidence 99544 2336799999999999887652211 1111000000 011267776 7788888887
Q ss_pred HHHhCcc-hHHHHHHHHHHHHHHHHHHHhcCCCeEEc-CCC--Ccc-eEEEecCC---HHHHHHHHHHcCceeeeec--C
Q 001989 435 AVYHGPE-GLKTIAQRVHGLAGTFALGLKKLGTVEVQ-GLP--FFD-TVKVKCAD---AHAIASAAYKIEMNLRVVD--S 504 (985)
Q Consensus 435 l~~~g~~-Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~-~~~--~~~-~~~~~~~~---~~~v~~~L~~~GI~~~~~~--~ 504 (985)
.++..+ |++++.+|..+++++++++|++++|+... .++ ..+ .++|..++ ..++.+.+.++||.+.... .
T Consensus 241 -~~l~~~gG~e~i~~r~~~l~~~l~~~l~~~~gl~~~~~~~~~rs~~v~sf~~~~~~~~~~~~~~~~~~Gi~~~~~~~~~ 319 (349)
T TIGR01364 241 -KWLKEQGGVKAIEKRNQAKAQLLYDTIDNSNGFYRNPVDPRNRSRMNVVFTLGNEELEKRFLKEAEERGLVSLKGHRSV 319 (349)
T ss_pred -HHHHHcCCHHHHHHHHHHHHHHHHHHHHhCCCeeccCCCHHHcCCeEEEEecCChhHhHHHHHHHHHCCCcccCCcccc
Confidence 677778 79999999999999999999999447555 221 232 36677664 3667678888999554432 4
Q ss_pred CeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 505 NTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 505 ~~lris~t~~~t~edId~li~aL~~ 529 (985)
+.+|+|+..+||+||||+|+++|++
T Consensus 320 g~vRvS~~~~nt~edid~l~~al~~ 344 (349)
T TIGR01364 320 GGMRASIYNAMPLEGVQALVDFMKE 344 (349)
T ss_pred CeeEEECcCCCCHHHHHHHHHHHHH
Confidence 7899999999999999999999984
|
This model represents the common form of the phosphoserine aminotransferase SerC. The phosphoserine aminotransferase of the archaeon Methanosarcina barkeri and putative phosphoserine aminotransferase of Mycobacterium tuberculosis are represented by separate models. All are members of the class V aminotransferases (pfam00266). |
| >PRK05355 3-phosphoserine/phosphohydroxythreonine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.5e-18 Score=194.87 Aligned_cols=281 Identities=12% Similarity=0.041 Sum_probs=192.0
Q ss_pred HHHHHHHHHHHHHhcCCCC-cceee-ccchHHHHHHHHHHhhhhcCCCCEEE-EcCCCChhHHHHHHHhhcCCCeEEEEe
Q 001989 210 LESLLNFQTMIADLTGLPM-SNASL-LDEGTAAAEAMAMCNNIQKGKKKTFI-IASNCHPQTIDICITRADGFDIKVVVS 286 (985)
Q Consensus 210 l~~i~e~q~~ia~L~g~~~-~~~sl-~~~~ta~~ea~~~a~~~~~~~g~~Vl-v~~~~H~s~~~~~~~~a~~~gi~v~~v 286 (985)
.+.+.+.++.+++++|.+. ..+.+ ..+||+++||+++.+- . ++++++ +..+.+.... ...++.+|.. ..+
T Consensus 47 ~~~~~~~~~~l~~l~~~~~~~~v~~~~gsgt~~~Ea~~~nl~-~--~g~~~l~i~~G~fg~r~---~~~a~~~g~~-~~~ 119 (360)
T PRK05355 47 EAVAEEAEADLRELLNIPDNYKVLFLQGGASLQFAMVPMNLL-G--GGKKADYVDTGSWSKKA---IKEAKKYGEV-NVA 119 (360)
T ss_pred HHHHHHHHHHHHHHhCCCCCcEEEEEcCCchHHHHHHHHhcC-C--CCCeEEEEECCHHHHHH---HHHHHHhCCc-eEE
Confidence 4778889999999999843 23444 4788999999887653 2 556654 4444553322 2224445644 332
Q ss_pred --Cc-------hhhhc--cCCCEeEEEEEc-CCCCeeec-cHHHHHHHHHhCCcEEEEEecCccccCC-CCCCcccceEE
Q 001989 287 --DL-------KDIDY--KSGDVCGVLVQY-PGTEGEVL-DYGDFIKNAHANGVKVVMATDLLALTIL-KPPGELGADIV 352 (985)
Q Consensus 287 --~~-------~~l~~--l~~~t~~V~v~~-pn~~G~v~-di~~I~~~a~~~galliV~a~~~~lg~l-~~~~~~GaDi~ 352 (985)
+. .++++ +++++++|.+++ .|.+|++. ||++| +|++++||+ ..++|.. .+..+| |++
T Consensus 120 ~~~~~~g~~~~~~~~~~~l~~~~~~V~~th~eTstGv~~~~i~~i------~g~l~vVDa-vss~g~~~idv~~~--d~~ 190 (360)
T PRK05355 120 ASSEDDGFTYIPPLDEWQLSDDAAYVHYTSNETIDGTEFHELPDT------GDVPLVADM-SSDILSRPIDVSKF--GLI 190 (360)
T ss_pred ecccccCCCCCCChhhccCCCCCCEEEEccCCCcceEecCccccc------CCCcEEEEc-CccccCccCCHHHc--cEE
Confidence 21 13323 677889998876 58999998 88877 799999954 3455544 234556 599
Q ss_pred EecCccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccc-cccCCCccchhHHHHHHH
Q 001989 353 VGSAQRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRR-DKATSNICTAQALLANMA 431 (985)
Q Consensus 353 v~s~k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irr-e~atsni~t~~~l~a~~a 431 (985)
++++||+ +|.||+|++++++++++++.+.+ + .++++.... .+. -.+|+|+ ..++++.+
T Consensus 191 ~~ssqK~-----lgP~Glg~l~~s~~~l~~~~~~~-~----------~~~~~~~~~--~~~~~~~Tp~~---~~i~aL~~ 249 (360)
T PRK05355 191 YAGAQKN-----IGPAGLTIVIVREDLLGRALPSI-P----------SMLDYKTHA--DNDSMYNTPPT---FAIYLAGL 249 (360)
T ss_pred EEecccc-----ccCCceEEEEECHHHHhhcccCC-C----------hHHHHHHHH--hcCCccCCCcH---HHHHHHHH
Confidence 9999554 23367999999999998876531 2 111111000 011 1367777 78888888
Q ss_pred HHHHHHhCcc-hHHHHHHHHHHHHHHHHHHHhcCCCeEEcCC--CCcc-eEEEecCC---HHHHHHHHHHcCceeeee--
Q 001989 432 AMYAVYHGPE-GLKTIAQRVHGLAGTFALGLKKLGTVEVQGL--PFFD-TVKVKCAD---AHAIASAAYKIEMNLRVV-- 502 (985)
Q Consensus 432 a~~l~~~g~~-Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~--~~~~-~~~~~~~~---~~~v~~~L~~~GI~~~~~-- 502 (985)
++ .++..+ |++++.+|+.+++++++++|+++|.+..+.+ ...+ .++|..++ ..++.+.+.++||.+...
T Consensus 250 aL--~~i~~~gG~e~i~~r~~~l~~~l~~~l~~~~~~~~~~~~~~rs~~v~sf~~~~~~~~~~~~~~~~~~Gi~~~~~~~ 327 (360)
T PRK05355 250 VF--KWLKEQGGVAAMEKRNQEKAALLYDAIDSSDFYRNPVAPEDRSRMNVPFTLADEELDKKFLAEAKAAGLVGLKGHR 327 (360)
T ss_pred HH--HHHHHccCHHHHHHHHHHHHHHHHHHHHhCCCcccCCChhhcCCcEEEEEcCChHHHHHHHHHHHHCCCcccCCCC
Confidence 87 666678 8999999999999999999999972333322 2232 36777766 356767888899987433
Q ss_pred cCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 503 DSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 503 ~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
..+.+|+|+..+||+||||+|+++|++
T Consensus 328 ~~g~vRiS~~~~nt~eei~~l~~~l~~ 354 (360)
T PRK05355 328 SVGGMRASIYNAMPLEGVQALVDFMKE 354 (360)
T ss_pred ccCcEEEECCCCCCHHHHHHHHHHHHH
Confidence 247899999999999999999999984
|
|
| >TIGR01821 5aminolev_synth 5-aminolevulinic acid synthase | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.2e-18 Score=200.35 Aligned_cols=296 Identities=18% Similarity=0.186 Sum_probs=194.2
Q ss_pred hHHHHHHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEc
Q 001989 629 GYQEMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVG 708 (985)
Q Consensus 629 G~~~~~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~ 708 (985)
|......++++.+++++|.+. .+++++|++++++++.++..+ .+++.|+.+...|++....+...|+++..++
T Consensus 87 g~~~~~~~Le~~la~~~g~~~-~l~~~sG~~an~~ai~~l~~~------~~~~~v~~~~~~h~s~~~~~~~~g~~~~~~~ 159 (402)
T TIGR01821 87 GTNIPHVELEAELADLHGKES-ALVFTSGYVANDATLATLAKI------IPGCVIFSDELNHASMIEGIRHSGAEKFIFR 159 (402)
T ss_pred CCcHHHHHHHHHHHHHhCCCe-EEEECchHHHHHHHHHHhhCC------CCCCEEEEcchHhHHHHHHHHHcCCeEEEEC
Confidence 334456789999999999754 466788988877666654321 2456666666678776666677888887776
Q ss_pred CCCCCCCCHHHHHHHHHhcCC-CEEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccC-CCC-----CC
Q 001989 709 TDAKGNINIEELRKAAEANRD-NLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVG-LTS-----PG 780 (985)
Q Consensus 709 ~d~~g~iD~e~L~~~i~~~~~-~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~-l~~-----pg 780 (985)
+ .|+++++++++...+ ++++|++++| |.+|.+. |+++|.++|+++|++++||++|..+..+ ... .+
T Consensus 160 ~-----~d~~~l~~~l~~~~~~~~~~v~~e~~~~~~G~~~-~l~~i~~l~~~~~~~livDea~~~G~~g~~g~g~~~~~~ 233 (402)
T TIGR01821 160 H-----NDVAHLEKLLQSVDPNRPKIIAFESVYSMDGDIA-PIEEICDLADKYGALTYLDEVHAVGLYGPRGGGIAERDG 233 (402)
T ss_pred C-----CCHHHHHHHHHhccCCCCeEEEEcCCCCCCCCcc-CHHHHHHHHHHcCCEEEEeCcccccccCCCCCccchhcc
Confidence 5 388999998874433 6889999998 4689998 8999999999999999999999644321 110 11
Q ss_pred -ccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHH
Q 001989 781 -YIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTY 859 (985)
Q Consensus 781 -~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~ 859 (985)
...+|+++.++.|.|+. +| |++++++++.+.+.... ....+ ... +++..++++.+.
T Consensus 234 ~~~~~div~~t~sKa~g~------~G-G~i~~~~~~~~~l~~~~-----------~~~~~-t~~----~~~~~~aaa~aa 290 (402)
T TIGR01821 234 LMHRIDIIEGTLAKAFGV------VG-GYIAASRKLIDAIRSYA-----------PGFIF-TTS----LPPAIAAGATAS 290 (402)
T ss_pred CCCCCeEEEEechhhhcc------CC-ceeecCHHHHHHHHHhC-----------cCcee-cCc----CCHHHHHHHHHH
Confidence 11368888888998853 33 67777776654442110 00000 001 122334444555
Q ss_pred HHHhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHH-CCCccCCC
Q 001989 860 IAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMD-YGFHGPTM 937 (985)
Q Consensus 860 l~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~-~Gi~~~~~ 937 (985)
|..+..+ .+..++..++++++.++|++ ++++. ++.++. +.+.+.. .....++.++|.+ +||++...
T Consensus 291 L~~~~~~--~~~~~~~~~~~~~l~~~L~~~g~~~~--~~~~~i---~~i~~~~-----~~~a~~~~~~L~~~~Gi~v~~~ 358 (402)
T TIGR01821 291 IRHLKES--QDLRRAHQENVKRLKNLLEALGIPVI--PNPSHI---VPVIIGD-----AALCKKVSDLLLNKHGIYVQPI 358 (402)
T ss_pred HHHhhcC--HHHHHHHHHHHHHHHHHHHHcCCCcC--CCCCCE---EEEEeCC-----HHHHHHHHHHHHhcCCEEEEeE
Confidence 6655433 33344556888999999987 55542 222222 2233320 1135678898875 59998665
Q ss_pred CCC-C---CCEEEEeccCCCCHHHHHHHHccCChhHHHHhh
Q 001989 938 SWP-V---PGTLMIEPTESESKSWTGIVMLSSPSEKKLHRL 974 (985)
Q Consensus 938 ~~p-~---~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~ 974 (985)
.+| + .+.+||+++..+|++|||+ ++++|+++++++
T Consensus 359 ~~p~~~~g~~~lRis~~~~~t~edi~~--~~~~l~~~~~~~ 397 (402)
T TIGR01821 359 NYPTVPRGTERLRITPTPAHTDKMIDD--LVEALLLVWDRL 397 (402)
T ss_pred CCCCCCCCCceEEEEeCCCCCHHHHHH--HHHHHHHHHHHc
Confidence 444 1 2689999999999999999 889999988765
|
This model represents 5-aminolevulinic acid synthase, an enzyme for one of two routes to the heme precursor 5-aminolevulinate. The protein is a pyridoxal phosphate-dependent enzyme related to 2-amino-3-ketobutyrate CoA tranferase and 8-amino-7-oxononanoate synthase. This enzyme appears restricted to the alpha Proteobacteria and mitochondrial derivatives. |
| >TIGR03811 tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcus type | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.1e-17 Score=198.90 Aligned_cols=305 Identities=16% Similarity=0.163 Sum_probs=197.5
Q ss_pred CHHHHHHHHHHHhccccCccccc-ccccc-cccCCCcc-ccccccccccccccCCCCchhhhhhHHHHHHHHHHHHHHHh
Q 001989 569 TEHELLRYIHLLQSKELSLCHSM-IPLGS-CTMKLNAT-TEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTIT 645 (985)
Q Consensus 569 se~e~~~~l~~l~~~~~~~~~~~-~~lG~-~t~~~~~~-~~~~~~~~~~f~~~~p~~p~e~~~G~~~~~~e~~~~la~l~ 645 (985)
+-.++++.+...-..+....... .++|+ +++...+. .-+.. ....|-+-... |.++++.++..++-+|+|+++
T Consensus 61 ~~~~~l~~l~~~l~~~sv~~~~P~ry~ghm~~~~~~paila~~~---a~~~N~n~~~~-e~SP~~t~lE~~vi~~la~l~ 136 (608)
T TIGR03811 61 NMKDVLDELSSRLRTESVPWHSAGRYWGHMNSETLMPAILAYNY---AMLWNGNNVAY-ESSPATSQMEEEVGKEFATLM 136 (608)
T ss_pred CHHHHHHHHHHHHhcCCCCCCCccceEEECcCCCCHHHHHHHHH---HHHhCCCCCcc-ccCchHHHHHHHHHHHHHHHh
Confidence 56778888877554442233445 67885 22222211 11111 11222122222 667889999999999999999
Q ss_pred CCCcc-ceecCcHHHHHHHHHHHHHHHHH-----hcCC------------------------------------------
Q 001989 646 GFDSF-SLQPNAGAAGEYAGLMVIRAYHK-----ARGD------------------------------------------ 677 (985)
Q Consensus 646 G~~~~-~~~~~sGa~a~~a~l~air~~~~-----~~g~------------------------------------------ 677 (985)
|++.. ..++++|++|++.++.++|.... ....
T Consensus 137 G~~~~~G~~TsGGT~ANl~aL~~AR~~k~~p~a~~~~~~~~~~~~~~w~l~n~~~~~~~~l~~~~~~~~~~~~~~~~~~g 216 (608)
T TIGR03811 137 GYKNGWGHIVADGSLANLEGLWYARNIKSLPFAMKEVKPELVAGKSDWELLNMPTKEIMDLLESAGDQIDEIKAHSARSG 216 (608)
T ss_pred CCCCCCeEEeCChHHHHHHHHHHHHHhhhccchhhhccccccccccchhhcccccccccccccccccchhhhhhhccccc
Confidence 99864 35567889899888888886420 0000
Q ss_pred --CCC-CEEEEcCCCCcccHHHHHHCCc---EEEEEcCCCCCCCCHHHHHHHHHhc---CCCEEEEEEEcCC-Ccccccc
Q 001989 678 --HHR-NVCIIPVSAHGTNPATAAMCGM---KIVSVGTDAKGNINIEELRKAAEAN---RDNLSTLMVTYPS-THGVYEE 747 (985)
Q Consensus 678 --~~~-~~IIv~~~~Hg~~~~~a~~~G~---~vv~v~~d~~g~iD~e~L~~~i~~~---~~~t~~Vvv~~pn-~~G~i~~ 747 (985)
..+ .++++|..+|-+..+++...|+ .++.||+|+++++|+++|+++|++. ...+.+|+.+..+ .+|.++
T Consensus 217 ~~~~~~~~vl~s~~aHyS~~KAa~ilGlG~~~vv~VpvD~~~rmd~~~L~~~I~~~~~~g~p~~~VVataGTT~~GaiD- 295 (608)
T TIGR03811 217 KDLQKLGKWLVPQTKHYSWLKAADIIGIGLDQVIPVPVDSNYRMDINELEKIIRKLAAEKTPILGVVGVVGSTEEGAVD- 295 (608)
T ss_pred cccccceEEEECCCccHHHHHHHHHcCCCcccEEEeecCCCCcCCHHHHHHHHHHHHhcCCCeEEEEEEcCCcCCcccC-
Confidence 001 1688899999999999999998 6999999999999999999999631 1235567777776 499999
Q ss_pred CHHHHHHHH---HHcCC--EEEEEccccccc-cCCCC-----------------------------C-------CccCCc
Q 001989 748 GIDEICKII---HDNGG--QVYMDGANMNAQ-VGLTS-----------------------------P-------GYIGAD 785 (985)
Q Consensus 748 di~eI~~la---~~~ga--lliVD~a~~~~~-~~l~~-----------------------------p-------g~~g~D 785 (985)
||++|+++| +++|+ |+|||||..-.. ..+.+ + +-..+|
T Consensus 296 pl~eI~~l~~~~~~~gl~~~lHVDAAyGG~~~~l~~~~~~~~~p~~~~~~~~~~~~~f~~~~~~l~~~~~~~l~gle~AD 375 (608)
T TIGR03811 296 GIDKIVALRNKLMKEGIYFYLHVDAAYGGYGRAIFLDEDDNFIPYDDLQEVHAEYGVFTEKKEYISREVYNAYKAISEAE 375 (608)
T ss_pred CHHHHHHHHHHHHHcCCceeEeeeccccchhhhhhccccccccccchhhcccccccccccccccccHhHHHHHhcCcCce
Confidence 899999999 66887 699999873110 00111 0 123689
Q ss_pred EEEeCCcccccccCCCCCCceEEEEEccc-ccCcC---CCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHH
Q 001989 786 VCHLNLHKTFCIPHGGGGPGMGPIGVKKH-LAPFL---PSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIA 861 (985)
Q Consensus 786 i~~~s~hK~l~~p~g~GGPg~G~i~~~~~-l~~~l---p~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~ 861 (985)
.++.++||++..|+++ |.+++|+. +.+.+ ..++.....+ . . ..-+...+.++..| ..+++.|+.++
T Consensus 376 SItvDpHK~g~~Py~~-----G~ll~Rd~~~~~~~~~~a~Yl~~~~~~-~-p-~~~g~~~legSR~g--a~AlklW~~lr 445 (608)
T TIGR03811 376 SVTIDPHKMGYIPYSA-----GGIVIQDIRMRDVISYFATYVFEKGAD-I-P-ALLGAYILEGSKAG--ATAASVWAAHK 445 (608)
T ss_pred EEEeCcccccccCCCe-----EEEEEeCHHHHHHHhcCcchhcccccc-C-c-ccccccceecCCcc--HHHHHHHHHHH
Confidence 9999999999888765 46777753 22211 1111100000 0 0 00000111222222 33567799999
Q ss_pred Hh--cHHHHHHHHHHHHHHHHHHHHHhhc
Q 001989 862 MM--GSKGLTEASKIAILNANYMAKRLEK 888 (985)
Q Consensus 862 ~l--g~eGl~~~~~~~~~~a~~l~~~L~~ 888 (985)
.+ |.+|+.++.++.+++++++.+.|++
T Consensus 446 ~l~~G~~Gyg~~i~~~i~~A~~~~~~L~~ 474 (608)
T TIGR03811 446 VLPLNVTGYGKLIGASIEGAHRFYDFLNN 474 (608)
T ss_pred HHhcCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 98 9999999999999999999999976
|
This model represents tyrosine decarboxylases in the family of the Enterococcus faecalis enzyme Tdc. These enzymes often are encoded next to tyrosine/tyramine antiporter, together comprising a system in which tyrosine decarboxylation can protect against exposure to acid conditions. This clade differs from the archaeal tyrosine decarboxylases associated with methanofuran biosynthesis. |
| >PRK04073 rocD ornithine--oxo-acid transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=6.3e-18 Score=196.08 Aligned_cols=319 Identities=14% Similarity=0.136 Sum_probs=201.1
Q ss_pred ccccccccCCCccccccccccccccccCCCCchhhhhhHHHHHHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHH
Q 001989 592 IPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAY 671 (985)
Q Consensus 592 ~~lG~~t~~~~~~~~~~~~~~~~f~~~~p~~p~e~~~G~~~~~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~ 671 (985)
..||++++.+..+...+...........+. +...++++.++++++.+ ..++.+||++|++++++++|.|
T Consensus 52 ~~lGh~~p~v~~ai~~~~~~~~~~~~~~~~----------~~~~~l~~~l~~~~~~~-~~~~~~SGseA~e~Alk~a~~~ 120 (396)
T PRK04073 52 VNQGHRHPKIIQALKDQADKVTLTSRAFHS----------DQLGPWYEKVAKLTGKD-MVLPMNTGAEAVETAIKAARRW 120 (396)
T ss_pred ccCCCCCHHHHHHHHHHHhhccccccccCC----------HHHHHHHHHHHhcCCCC-eEEEcCChHHHHHHHHHHHHHH
Confidence 457888777766544443222111111111 22447888899988765 3567799999999999998876
Q ss_pred HHh-cCC-CCCCEEEE-cCCCCcccHHHHHHCCc------------EEEEEcCCCCCCCCHHHHHHHHHhcCCCEEEEEE
Q 001989 672 HKA-RGD-HHRNVCII-PVSAHGTNPATAAMCGM------------KIVSVGTDAKGNINIEELRKAAEANRDNLSTLMV 736 (985)
Q Consensus 672 ~~~-~g~-~~~~~IIv-~~~~Hg~~~~~a~~~G~------------~vv~v~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv 736 (985)
... +|. .++++||. ...+||.........+- .+..+|.+ |+++++++++ +++++|++
T Consensus 121 ~~~~~g~~~~r~~ii~~~~~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~l~~~i~---~~~~~vii 192 (396)
T PRK04073 121 AYDVKGVEPNKAEIIACEGNFHGRTMAAVSLSSEEEYKRGFGPMLPGIKKIPYG-----DLEALKAAIT---PNTAAFLV 192 (396)
T ss_pred hhhccCCCCCCCEEEEECCCcCCCCHHHHhhcCCcccccCCCCCCCCceEeCCC-----CHHHHHHhcc---cCeEEEEE
Confidence 321 121 13456666 56789987655443221 12344442 8999999997 78999988
Q ss_pred EcC-CCccccccC---HHHHHHHHHHcCCEEEEEccccccccCCC-----CCCccCCcEEEeCCcccccccCCCCCCceE
Q 001989 737 TYP-STHGVYEEG---IDEICKIIHDNGGQVYMDGANMNAQVGLT-----SPGYIGADVCHLNLHKTFCIPHGGGGPGMG 807 (985)
Q Consensus 737 ~~p-n~~G~i~~d---i~eI~~la~~~galliVD~a~~~~~~~l~-----~pg~~g~Di~~~s~hK~l~~p~g~GGPg~G 807 (985)
+.+ |.+|.+.++ +++|.++|+++|+++++|+++. +++... ......+|++++ .|.+ ++||..+|
T Consensus 193 ep~~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~-g~g~~g~~~~~~~~~~~pdi~~~--sK~l----g~gg~~ig 265 (396)
T PRK04073 193 EPIQGEAGINIPPEGFLKAARELCKEENVLFIADEIQT-GLGRTGKLFACDWDNVTPDMYIL--GKAL----GGGVFPIS 265 (396)
T ss_pred cCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchh-CCCcCcHHHHhhhcCCCCCEEEe--cccc----cCCCCcce
Confidence 887 578988632 8999999999999999999984 222100 011224688765 3776 44556788
Q ss_pred EEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhh
Q 001989 808 PIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLE 887 (985)
Q Consensus 808 ~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~ 887 (985)
++++++++.+.+..... . +++.+++..++++.+.|..+..+++. ++..++++++.+.|+
T Consensus 266 ~~~~~~~i~~~~~~~~~--------------~----~t~~~~~~~~aaa~aaL~~~~~~~l~---~~~~~~~~~l~~~L~ 324 (396)
T PRK04073 266 CVAANRDILGVFTPGSH--------------G----STFGGNPLACAVSIAALEVLEEEKLP---ERSLELGEYFKEQLK 324 (396)
T ss_pred EEEEcHHHHhhhcCCCC--------------C----CCCCCCHHHHHHHHHHHHHHHhcCHH---HHHHHHHHHHHHHHH
Confidence 99988877665431100 0 01122445555566677666555443 455667888998887
Q ss_pred c-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCCCCCCCEEEEeccCCCCHHHHHHHHccCC
Q 001989 888 K-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKSWTGIVMLSSP 966 (985)
Q Consensus 888 ~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~~p~~~~lris~t~~~t~eeId~~~~~~~ 966 (985)
+ +...+...+....+ +.+.+. .+..++.++|.++|+.+.... ++.+||+|+..+|+||||+ +++.
T Consensus 325 ~l~~~~i~~~~~~g~~--~~~~~~-------~~~~~~~~~l~~~Gv~~~~~~---~~~iRi~p~l~~t~e~i~~--~~~~ 390 (396)
T PRK04073 325 EIDNPMIKEVRGRGLF--IGVELN-------EPARPYCEALKEEGLLCKETH---ETVIRFAPPLVITKEELDW--AFEK 390 (396)
T ss_pred hhcCCcccceecceEE--EEEEec-------chHHHHHHHHHHCCeEEecCC---CCEEEEECCcccCHHHHHH--HHHH
Confidence 6 22211110001111 334432 246789999999999975322 3799999999999999999 7777
Q ss_pred hhHHH
Q 001989 967 SEKKL 971 (985)
Q Consensus 967 l~~~~ 971 (985)
|++++
T Consensus 391 l~~~l 395 (396)
T PRK04073 391 IKAVL 395 (396)
T ss_pred HHHHh
Confidence 77654
|
|
| >TIGR01821 5aminolev_synth 5-aminolevulinic acid synthase | Back alignment and domain information |
|---|
Probab=99.80 E-value=7.3e-18 Score=196.07 Aligned_cols=312 Identities=13% Similarity=0.147 Sum_probs=199.4
Q ss_pred ccceecCCCCCCCCCcHHHHHHHHhCCccccccCCChhhHhhhHHHHHHHHHHHHHHhcCCCCcceeeccchHHHHHHHH
Q 001989 166 VYKSFIGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMA 245 (985)
Q Consensus 166 ~~~~~lG~g~y~~~~p~~v~~~i~~~~~~~t~~~pyq~e~sqg~l~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~ 245 (985)
..++|||.+..|..+.+... ++ .+.+ + ++..+....|..+...++++.+|+++|.+. +.++.+|+.+.++++
T Consensus 51 ~sn~ylgl~~~p~v~~a~~~-~~-~~~~--~--~~~~s~~~~g~~~~~~~Le~~la~~~g~~~--~l~~~sG~~an~~ai 122 (402)
T TIGR01821 51 CSNDYLGMGQHPEVLQAMHE-TL-DKYG--A--GAGGTRNISGTNIPHVELEAELADLHGKES--ALVFTSGYVANDATL 122 (402)
T ss_pred EccCcCCCCCCHHHHHHHHH-HH-HHcC--C--CCcchhhhhCCcHHHHHHHHHHHHHhCCCe--EEEECchHHHHHHHH
Confidence 45678888865444433332 22 2211 1 122234455667778899999999999754 567788887777666
Q ss_pred HHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEe---Cchhhhc-c---C-CCEeEEEEEcC-CCCeeeccHH
Q 001989 246 MCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVS---DLKDIDY-K---S-GDVCGVLVQYP-GTEGEVLDYG 316 (985)
Q Consensus 246 ~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v---~~~~l~~-l---~-~~t~~V~v~~p-n~~G~v~di~ 316 (985)
.+... ..+++.|+.+...|++....++. .|+++..+ |.+++++ + + +++++|++.+| |++|.+.|++
T Consensus 123 ~~l~~-~~~~~~v~~~~~~h~s~~~~~~~----~g~~~~~~~~~d~~~l~~~l~~~~~~~~~~v~~e~~~~~~G~~~~l~ 197 (402)
T TIGR01821 123 ATLAK-IIPGCVIFSDELNHASMIEGIRH----SGAEKFIFRHNDVAHLEKLLQSVDPNRPKIIAFESVYSMDGDIAPIE 197 (402)
T ss_pred HHhhC-CCCCCEEEEcchHhHHHHHHHHH----cCCeEEEECCCCHHHHHHHHHhccCCCCeEEEEcCCCCCCCCccCHH
Confidence 44321 12567788888899999988853 46665544 3455655 3 2 36788888887 7899999999
Q ss_pred HHHHHHHhCCcEEEEEecCccccCCCCCC---------cccceEEEecC-ccccccCCCCCCcEEEEEEchhhHhcCCCc
Q 001989 317 DFIKNAHANGVKVVMATDLLALTILKPPG---------ELGADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGR 386 (985)
Q Consensus 317 ~I~~~a~~~galliV~a~~~~lg~l~~~~---------~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~ 386 (985)
+|.++|+++|++++|| +.+++|++.+.+ ....||++++. |.|+.+ | |++++++++++.+...
T Consensus 198 ~i~~l~~~~~~~livD-ea~~~G~~g~~g~g~~~~~~~~~~~div~~t~sKa~g~~---G----G~i~~~~~~~~~l~~~ 269 (402)
T TIGR01821 198 EICDLADKYGALTYLD-EVHAVGLYGPRGGGIAERDGLMHRIDIIEGTLAKAFGVV---G----GYIAASRKLIDAIRSY 269 (402)
T ss_pred HHHHHHHHcCCEEEEe-CcccccccCCCCCccchhccCCCCCeEEEEechhhhccC---C----ceeecCHHHHHHHHHh
Confidence 9999999999999994 445555432211 12368988887 888642 2 6787887776655100
Q ss_pred eeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCC
Q 001989 387 IVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGT 466 (985)
Q Consensus 387 ~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~ 466 (985)
.+.|.++ ++.| +....+..+++ ..+..+ +++.++..++.+++++.|+++|
T Consensus 270 ----------~~~~~~t------------~~~~---~~~~aaa~aaL--~~~~~~--~~~~~~~~~~~~~l~~~L~~~g- 319 (402)
T TIGR01821 270 ----------APGFIFT------------TSLP---PAIAAGATASI--RHLKES--QDLRRAHQENVKRLKNLLEALG- 319 (402)
T ss_pred ----------CcCceec------------CcCC---HHHHHHHHHHH--HHhhcC--HHHHHHHHHHHHHHHHHHHHcC-
Confidence 0001110 0001 11222233333 333222 5566677789999999999987
Q ss_pred eEEcCCCCcceEEEecCC---HHHHHHHHHH-cCceeeeec-------CCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 467 VEVQGLPFFDTVKVKCAD---AHAIASAAYK-IEMNLRVVD-------SNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~---~~~v~~~L~~-~GI~~~~~~-------~~~lris~t~~~t~edId~li~aL~~ 529 (985)
++++.+ ..+.+.+.++. +.++.++|.+ +||.++... .+.+|++++.++|++|||+++++|.+
T Consensus 320 ~~~~~~-~~~i~~i~~~~~~~a~~~~~~L~~~~Gi~v~~~~~p~~~~g~~~lRis~~~~~t~edi~~~~~~l~~ 392 (402)
T TIGR01821 320 IPVIPN-PSHIVPVIIGDAALCKKVSDLLLNKHGIYVQPINYPTVPRGTERLRITPTPAHTDKMIDDLVEALLL 392 (402)
T ss_pred CCcCCC-CCCEEEEEeCCHHHHHHHHHHHHhcCCEEEEeECCCCCCCCCceEEEEeCCCCCHHHHHHHHHHHHH
Confidence 776532 12223333332 6788899875 599886531 25799999999999999999999974
|
This model represents 5-aminolevulinic acid synthase, an enzyme for one of two routes to the heme precursor 5-aminolevulinate. The protein is a pyridoxal phosphate-dependent enzyme related to 2-amino-3-ketobutyrate CoA tranferase and 8-amino-7-oxononanoate synthase. This enzyme appears restricted to the alpha Proteobacteria and mitochondrial derivatives. |
| >cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I) | Back alignment and domain information |
|---|
Probab=99.79 E-value=5.5e-18 Score=192.98 Aligned_cols=289 Identities=16% Similarity=0.161 Sum_probs=189.7
Q ss_pred HHHHHHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcC
Q 001989 630 YQEMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGT 709 (985)
Q Consensus 630 ~~~~~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~ 709 (985)
.....+++++.+++++|.+. .+.+++|++++++++.++. ++|++|++++..|+.+...++..|++++.++.
T Consensus 44 ~~~~~~~l~~~la~~~~~~~-~iv~~sg~~a~~~~~~~~~--------~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~ 114 (349)
T cd06454 44 TSDLHEELEEELAEFHGKEA-ALVFSSGYAANDGVLSTLA--------GKGDLIISDSLNHASIIDGIRLSGAKKRIFKH 114 (349)
T ss_pred CchHHHHHHHHHHHHhCCCC-EEEeccHHHHHHHHHHHhc--------CCCCEEEEehhhhHHHHHHHHHcCCceEEecC
Confidence 33456688899999999875 4666778877655444332 36789999988887777677888999988764
Q ss_pred CCCCCCCHHHHHHHHHhcC--CCEEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCC-------CCC
Q 001989 710 DAKGNINIEELRKAAEANR--DNLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGL-------TSP 779 (985)
Q Consensus 710 d~~g~iD~e~L~~~i~~~~--~~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l-------~~p 779 (985)
+|++++++++++.. +++++|+++++ |.+|.+. |+++|+++|+++|+++++|++|..+..+. ...
T Consensus 115 -----~~~~~le~~i~~~~~~~~~~~v~~~~~~~~tG~~~-~~~~i~~~~~~~~~~livD~a~~~g~~~~~~~~~~~~~~ 188 (349)
T cd06454 115 -----NDMEDLEKLLREARRPYGKKLIVTEGVYSMDGDIA-PLPELVDLAKKYGAILFVDEAHSVGVYGPHGRGVEEFGG 188 (349)
T ss_pred -----CCHHHHHHHHHHhhccCCCeEEEEeccccCCCCcc-CHHHHHHHHHHcCCEEEEEccccccccCCCCCChhhhcc
Confidence 58899999997431 45778888887 4689998 89999999999999999999985432211 011
Q ss_pred CccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHH
Q 001989 780 GYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTY 859 (985)
Q Consensus 780 g~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~ 859 (985)
...+.|+++.|+||+|+. +| |+++.++++.+.+...... + ..++... ...++++.+.
T Consensus 189 ~~~~~~i~~~s~sK~~~~------~g-G~i~~~~~~~~~~~~~~~~-------~---~~~~~~~------~~~~~a~~~~ 245 (349)
T cd06454 189 LTDDVDIIMGTLGKAFGA------VG-GYIAGSKELIDYLRSYARG-------F---IFSTSLP------PAVAAAALAA 245 (349)
T ss_pred ccccCcEEEeechhhhcc------cC-CEEECCHHHHHHHHHhchh-------h---hccCCCC------HHHHHHHHHH
Confidence 345789999999999852 33 6777776654433211000 0 0001111 1122223344
Q ss_pred HHHhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCC
Q 001989 860 IAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMS 938 (985)
Q Consensus 860 l~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~ 938 (985)
++.+.. +.+..++..++++++.+.|++ ++.+. ++.+... +.+.+. .+.+..++.+.|.++||.+....
T Consensus 246 l~~~~~--~~~~~~~~~~~~~~l~~~l~~~g~~~~--~~~~~~~--~~~~~~-----~~~~~~~~~~~L~~~gI~~~~~~ 314 (349)
T cd06454 246 LEVLQG--GPERRERLQENVRYLRRGLKELGFPVG--GSPSHII--PPLIGD-----DPAKAVAFSDALLERGIYVQAIR 314 (349)
T ss_pred HHHHhc--CHHHHHHHHHHHHHHHHHHHhcCCccc--CCCCCcE--EEEeCC-----ChHHHHHHHHHHHhCCceEEEec
Confidence 444322 344566778889999999976 44432 1111111 112121 12356889999999999875433
Q ss_pred CC----CCCEEEEeccCCCCHHHHHHHHccCChhH
Q 001989 939 WP----VPGTLMIEPTESESKSWTGIVMLSSPSEK 969 (985)
Q Consensus 939 ~p----~~~~lris~t~~~t~eeId~~~~~~~l~~ 969 (985)
++ ..+.+|++++.+++++|+++ +++.|++
T Consensus 315 ~~~~~~~~~~iRi~~~~~~~~~~i~~--~~~~l~~ 347 (349)
T cd06454 315 YPTVPRGTARLRISLSAAHTKEDIDR--LLEALKE 347 (349)
T ss_pred CCccCCCCCeEEEEEeCCCCHHHHHH--HHHHHHH
Confidence 22 14789999999999999999 6666654
|
The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life. |
| >TIGR01437 selA_rel uncharacterized pyridoxal phosphate-dependent enzyme | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.4e-17 Score=190.53 Aligned_cols=296 Identities=15% Similarity=0.181 Sum_probs=184.8
Q ss_pred HHHHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCC-----------CCCCEEEEcCCCCccc----HHH
Q 001989 632 EMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGD-----------HHRNVCIIPVSAHGTN----PAT 696 (985)
Q Consensus 632 ~~~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~-----------~~~~~IIv~~~~Hg~~----~~~ 696 (985)
+.++++++++++++|.+.+ ++.++++.|+..+++++. ..|. .++++||++...+..+ ...
T Consensus 45 ~~~~~~~~~~a~~~g~~~~-~~~~g~t~al~~al~al~----~~Gd~~~~~~~~~s~~~~~eVi~~~~~~~~~~~~~~~~ 119 (363)
T TIGR01437 45 ELVNKTGEYIANLLGVEDA-VIVSSASAGIAQSVAAVI----TRGNRYLVENLHDSKIEVNEVVLPKGHNVDYGAPVETM 119 (363)
T ss_pred HHHHHHHHHHHHhhCCCeE-EEEcCHHHHHHHHHHHHh----cCCCcchhhcccccccccceEEEECccchhcCCchHHH
Confidence 5678899999999998764 566777777766655542 1120 1234888876322222 345
Q ss_pred HHHCCcEEEEEcCCCCCCCCHHHHHHHHHhcCCCEEEEE-EEcC-CCccccccCHHHHHHHHHHcCCEEEEEcccccccc
Q 001989 697 AAMCGMKIVSVGTDAKGNINIEELRKAAEANRDNLSTLM-VTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQV 774 (985)
Q Consensus 697 a~~~G~~vv~v~~d~~g~iD~e~L~~~i~~~~~~t~~Vv-v~~p-n~~G~i~~di~eI~~la~~~galliVD~a~~~~~~ 774 (985)
..+.|+++++++. ++.+|+++++++|+ ++|++++ +++| |++|.+. |+++|+++||++|+++++|++|..
T Consensus 120 ~~~~g~~~v~v~~--~~~~d~~~le~ai~---~~t~ai~~v~~~~~~~g~~~-~~~~i~~~a~~~gi~vivD~a~~~--- 190 (363)
T TIGR01437 120 VRLGGGKVVEAGY--ANECSAEQLEAAIT---EKTAAILYIKSHHCVQKSML-SVEDAAQVAQEHNLPLIVDAAAEE--- 190 (363)
T ss_pred HHhcCCeEEEEcC--CCCCCHHHHHHhcC---hhceEEEEEecCCCCcCCcC-CHHHHHHHHHHcCCeEEEECCCCC---
Confidence 6788999999986 35699999999998 8888766 4554 6788887 899999999999999999999841
Q ss_pred CCCCCCccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHH
Q 001989 775 GLTSPGYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILP 854 (985)
Q Consensus 775 ~l~~pg~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~ 854 (985)
.+.....+|+|++++|+||+| +||.+|+++.++++.+.+.....+. . +..+.++ .+ ..++.
T Consensus 191 ~~~~~~~~g~D~~~~S~~K~l------~gp~~G~l~~~~~~i~~~~~~~~~~-~----~~~~~~~-------~~-~~gl~ 251 (363)
T TIGR01437 191 DLQKYYRLGADLVIYSGAKAI------EGPTSGLVLGKKKYIEWVKLQSKGI-G----RAMKVGK-------EN-ILGLT 251 (363)
T ss_pred chHHHHHcCCCEEEEeCCccc------CCCceEEEEEcHHHHHHHHhccCCC-c----ceeccCH-------HH-HHHHH
Confidence 112234568999999999988 4677889888866554432111110 0 0000000 01 11222
Q ss_pred HHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc--cCCeeecCC-CCceeeEEEEEecCccccCCCCHHHHHHHHHHCC
Q 001989 855 ISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK--HYPILFRGV-NGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYG 931 (985)
Q Consensus 855 ~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~--g~~l~~~~~-~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~G 931 (985)
++..++...+.+-+ +...+++++++++|.+ ++.+....+ .+..+..+.+.+.. ...+.+..++.++|.++|
T Consensus 252 aAl~~~~~~~~~~~----~~~~~~~~~l~~~L~~i~g~~~~~~~~~~~~~~~~~~v~~~~--~~~g~~~~~l~~~L~~~~ 325 (363)
T TIGR01437 252 AALEQYLSTGKESG----AEMVAKLTPFIEALNTLKGVSASIVQDEAGRDIARAEIRFDE--SELGMTAADVVQALRQGE 325 (363)
T ss_pred HHHHHHHccCcccH----HHHHHHHHHHHHHHhcCCCeEEEEecCCCCCcCceEEEEEec--cCCCCCHHHHHHHHhcCC
Confidence 23333333333322 2333456789999986 344332111 11111123333321 012678999999999877
Q ss_pred --CccCCCCCCCCCEEEEeccCCCCHHHHHHHHccCChhHH
Q 001989 932 --FHGPTMSWPVPGTLMIEPTESESKSWTGIVMLSSPSEKK 970 (985)
Q Consensus 932 --i~~~~~~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~ 970 (985)
|.+.. .+...+.+++++.. .+.+|+|+ +++.|+++
T Consensus 326 ~~I~~r~-~~~~~~~~~l~~~~-~~~~e~~~--~~~~l~~~ 362 (363)
T TIGR01437 326 PAIYTRG-YKANEGIIEIDPRS-VTGGQLDI--IVERIREI 362 (363)
T ss_pred CCEEEee-eeecCCeEEEEeec-CCHHHHHH--HHHHHHHh
Confidence 44432 22235789999885 66999999 77777664
|
This model describes a protein related to a number of pyridoxal phosphate-dependent enzymes, and in particular to selenocysteine synthase (SelA), which converts Ser to selenocysteine on its tRNA. While resembling SelA, this protein is found only in species that have a better candidate SelA or else lack the other genes (selB, selC, and selD) required for selenocysteine incorporation. |
| >PLN03227 serine palmitoyltransferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.1e-17 Score=193.19 Aligned_cols=310 Identities=14% Similarity=0.146 Sum_probs=201.2
Q ss_pred CCccceecCCCCCCCCCcHHHHHHHHhCCccccccCCChhhHhhhHHHHHHHHHHHHHHhcCCCCcceeeccchHHHHHH
Q 001989 164 NKVYKSFIGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEA 243 (985)
Q Consensus 164 n~~~~~~lG~g~y~~~~p~~v~~~i~~~~~~~t~~~pyq~e~sqg~l~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea 243 (985)
|...++|||....|+..-+++. ++.. |.+.+ ..++..-|+...+.++|+.+|+++|.+. +.++.+|+++..+
T Consensus 2 ~f~s~dyLgl~~~~~~~~~~~~-a~~~---~g~~~--~~sr~~yg~~~~~~~LE~~lA~~~g~e~--al~~~sG~~a~~~ 73 (392)
T PLN03227 2 NFATHDFLSTSSSPTLRQTALE-SLSH---YGCGS--CGPRGFYGTIDAHLELEQCMAEFLGTES--AILYSDGASTTSS 73 (392)
T ss_pred CCcCcCccCCCCCHHHHHHHHH-HHHH---hCCCC--cccccccCChHHHHHHHHHHHHHhCCCc--EEEecCcHHHHHH
Confidence 4456789999987766655553 4332 33332 2445456777789999999999999874 5667777666666
Q ss_pred HHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEe---Cchhhhc----cC-----------CCEeEEEEEc
Q 001989 244 MAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVS---DLKDIDY----KS-----------GDVCGVLVQY 305 (985)
Q Consensus 244 ~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v---~~~~l~~----l~-----------~~t~~V~v~~ 305 (985)
+++++ . ++||+|++++..|++++..++ +. +.+++++ |.+++++ +. ++++.|++..
T Consensus 74 ~i~~l-~--~~GD~Vl~~~~~h~s~~~~~~-l~---~~~~~~~~~~d~~~l~~~~~~i~~~~~a~~~~~~~~t~~vi~E~ 146 (392)
T PLN03227 74 TVAAF-A--KRGDLLVVDRGVNEALLVGVS-LS---RANVRWFRHNDMKDLRRVLEQVRAQDVALKRKPTDQRRFLVVEG 146 (392)
T ss_pred HHHHh-C--CCCCEEEEeccccHHHHHHHH-Hc---CCeEEEeCCCCHHHHHHHHHHhhhhccccccccCCCcEEEEEcC
Confidence 66654 2 389999999999999998873 22 3455544 3344332 21 3577788877
Q ss_pred C-CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCCCC-----------CcccceEEEecC-ccccccCCCCCCcEEE
Q 001989 306 P-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKPP-----------GELGADIVVGSA-QRFGVPMGYGGPHAAF 372 (985)
Q Consensus 306 p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~~~-----------~~~GaDi~v~s~-k~lg~P~~~GGP~~G~ 372 (985)
+ |+.|.+.|+++|.++||++|+++++| +.+++|.+... ...|+||++++. |.++ |-.|+
T Consensus 147 v~~~~G~i~~l~~i~~l~~~~g~~livD-e~~~~g~~g~~G~g~~~~~g~~p~~~~Div~~slsk~~g-------~~gg~ 218 (392)
T PLN03227 147 LYKNTGTLAPLKELVALKEEFHYRLILD-ESFSFGTLGKSGRGSLEHAGLKPMVHAEIVTFSLENAFG-------SVGGM 218 (392)
T ss_pred CcCCCCcccCHHHHHHHHHHcCCEEEEE-CcccccccCCCCCcHHHHcCCCCCCCceEEEeechhhhh-------ccCcE
Confidence 6 78999999999999999999999994 55666554321 134789999996 6543 33467
Q ss_pred EEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccch--hHH--HHHHHHHHHHHhCcchHHHHHH
Q 001989 373 LATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTA--QAL--LANMAAMYAVYHGPEGLKTIAQ 448 (985)
Q Consensus 373 l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~--~~l--~a~~aa~~l~~~g~~Gl~~i~~ 448 (985)
+.+++++++.+.. .+ ...+++. ++. ++..+++ ..+. + .+++.+
T Consensus 219 v~~~~~~~~~~~~--~~---------------------------~~~~~~~~~~p~~~~aa~~al--~~~~-~-~~~~~~ 265 (392)
T PLN03227 219 TVGSEEVVDHQRL--SG---------------------------SGYCFSASAPPFLAKADATAT--AGEL-A-GPQLLN 265 (392)
T ss_pred EecCHHHHHHHHH--hC---------------------------cCccccCCCCHHHHHHHHHHH--HHHh-c-CHHHHH
Confidence 7778776644310 00 0001111 121 1111222 1211 1 246778
Q ss_pred HHHHHHHHHHHHHhcCCCeEEc----------CCCCcceEEEecCC------------HHHHHHHHHHcCceeee-----
Q 001989 449 RVHGLAGTFALGLKKLGTVEVQ----------GLPFFDTVKVKCAD------------AHAIASAAYKIEMNLRV----- 501 (985)
Q Consensus 449 ~~~~~a~~l~~~L~~~g~~~~~----------~~~~~~~~~~~~~~------------~~~v~~~L~~~GI~~~~----- 501 (985)
+..++.++++++|++.+ +..+ .....+.+.+.+.+ ..++.+.|.++||.+..
T Consensus 266 ~l~~~~~~l~~~L~~~~-~~~~~~~rg~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~~~~~~~~ 344 (392)
T PLN03227 266 RLHDSIANLYSTLTNSS-HPYALKLRNRLVITSDPISPIIYLRLSDQEATRRTDETLILDQIAHHSLSEGVAVVSTGGHV 344 (392)
T ss_pred HHHHHHHHHHHHHHhcC-CccccccccccccCCCCCCCEEEEEeCCHHHhhhhhhhhHHHHHHHHHHHCCCEEEeccccc
Confidence 88999999999998643 3211 11112233344332 24888999999997632
Q ss_pred ------ecCCeEEEEeccCCCHHHHHHHHHHHhCC
Q 001989 502 ------VDSNTVTASFDETTTLEDVDKLFIVFAGG 530 (985)
Q Consensus 502 ------~~~~~lris~t~~~t~edId~li~aL~~~ 530 (985)
.++..+|++++..+|+||||+++++|.+.
T Consensus 345 ~~~~~~~P~~~iR~~~~~~~t~eei~~~~~~l~~~ 379 (392)
T PLN03227 345 KKFLQLVPPPCLRVVANASHTREDIDKLLTVLGEA 379 (392)
T ss_pred CCcCCCCCCceEEEEecCCCCHHHHHHHHHHHHHH
Confidence 23578999999999999999999999853
|
|
| >PRK09064 5-aminolevulinate synthase; Validated | Back alignment and domain information |
|---|
Probab=99.79 E-value=9.9e-18 Score=195.30 Aligned_cols=296 Identities=16% Similarity=0.150 Sum_probs=192.7
Q ss_pred HHHHHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcCC
Q 001989 631 QEMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTD 710 (985)
Q Consensus 631 ~~~~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~d 710 (985)
.....++++.+++++|.+. .+++++|+++++.++.++..+ .+++.|+.....|++....+...|+++..++.
T Consensus 90 ~~~~~~l~~~la~~~g~~~-~~~~~sG~~an~~ai~~l~~~------~~~~~i~~~~~~h~s~~~~~~~~~~~~~~~~~- 161 (407)
T PRK09064 90 NHYHVELERELADLHGKEA-ALVFTSGYVSNDATLSTLAKL------IPDCVIFSDELNHASMIEGIRRSRCEKHIFRH- 161 (407)
T ss_pred HHHHHHHHHHHHHHhCCCc-EEEECcHHHHHHHHHHHHhCC------CCCCEEEEeCcchHHHHHHHHHcCCcEEEECC-
Confidence 4556789999999999654 466778888776666554321 24454555555566655556677888777775
Q ss_pred CCCCCCHHHHHHHHHhcC-CCEEEEEEEcCC-CccccccCHHHHHHHHHHcCCEEEEEccccccc-cCCCC-----CC-c
Q 001989 711 AKGNINIEELRKAAEANR-DNLSTLMVTYPS-THGVYEEGIDEICKIIHDNGGQVYMDGANMNAQ-VGLTS-----PG-Y 781 (985)
Q Consensus 711 ~~g~iD~e~L~~~i~~~~-~~t~~Vvv~~pn-~~G~i~~di~eI~~la~~~galliVD~a~~~~~-~~l~~-----pg-~ 781 (985)
.|+++|+++++... +++++|++++++ .+|.+. |+++|.++|+++|++++||++|..+. +.... .+ .
T Consensus 162 ----~d~~~le~~l~~~~~~~~~~v~~~~v~s~~G~~~-~l~~i~~l~~~~~~~livDEa~~~G~~g~~g~g~~~~~~~~ 236 (407)
T PRK09064 162 ----NDVAHLEELLAAADPDRPKLIAFESVYSMDGDIA-PIAEICDLADKYNALTYLDEVHAVGMYGPRGGGIAERDGLM 236 (407)
T ss_pred ----CCHHHHHHHHHhccCCCCeEEEEeCCCCCCcccc-CHHHHHHHHHHcCCEEEEECCCcccccCCCCCChHHhcCCC
Confidence 38999999887432 468899999984 689988 89999999999999999999996443 21100 11 1
Q ss_pred cCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHH
Q 001989 782 IGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIA 861 (985)
Q Consensus 782 ~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~ 861 (985)
..+|+++.+++|.|+. +| |++++++++.+.+.... ......+ +. ++..+.++.+.+.
T Consensus 237 ~~~div~~t~sKa~g~------~G-G~~~~~~~~~~~l~~~~-----------~~~~~t~-~~----~~~~~~aa~~al~ 293 (407)
T PRK09064 237 DRIDIIEGTLAKAFGV------MG-GYIAGSAALVDAVRSYA-----------PGFIFTT-SL----PPAIAAAALASIR 293 (407)
T ss_pred CCCeEEEEecchhhhc------cC-ceEecCHHHHHHHHHhC-----------ccccccC-cC----CHHHHHHHHHHHH
Confidence 2368998899999853 22 78887776654432110 0000000 11 2223334445565
Q ss_pred HhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHH-CCCccCCCCC
Q 001989 862 MMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMD-YGFHGPTMSW 939 (985)
Q Consensus 862 ~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~-~Gi~~~~~~~ 939 (985)
.+...+ ...++..++++++.++|++ ++++. ++.+++ +.+.+.. .....++.++|.+ +||.+..+.+
T Consensus 294 ~~~~~~--~~~~~~~~~~~~l~~~L~~~g~~~~--~~~~~i---v~i~~~~-----~~~~~~l~~~L~~~~gi~v~~~~~ 361 (407)
T PRK09064 294 HLKESN--EERERHQERAAKLKAALDAAGIPVM--PNESHI---VPVMVGD-----PEKCKKASDMLLEEHGIYVQPINY 361 (407)
T ss_pred HHhcCH--HHHHHHHHHHHHHHHHHHHcCCCCC--CCCCCE---EEEEeCC-----HHHHHHHHHHHHHhCCEEEeeECC
Confidence 554432 2345677889999999987 55542 121221 2233320 1246789999875 5999876544
Q ss_pred C-C---CCEEEEeccCCCCHHHHHHHHccCChhHHHHhhcc
Q 001989 940 P-V---PGTLMIEPTESESKSWTGIVMLSSPSEKKLHRLKM 976 (985)
Q Consensus 940 p-~---~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~~~ 976 (985)
| + .+.+||+++.++|++|+|+ +++.|++++.++..
T Consensus 362 p~~~~~~~~lRis~~~~~t~edi~~--l~~~l~~~~~~~~~ 400 (407)
T PRK09064 362 PTVPRGTERLRITPTPFHTDEMIDH--LVEALVEVWARLGL 400 (407)
T ss_pred CCCCCCCceEEEEeCCCCCHHHHHH--HHHHHHHHHHHcCC
Confidence 4 2 2579999999999999999 88999998876543
|
|
| >PRK13392 5-aminolevulinate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=7.4e-18 Score=196.49 Aligned_cols=292 Identities=17% Similarity=0.173 Sum_probs=191.0
Q ss_pred HHHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcCCCC
Q 001989 633 MFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAK 712 (985)
Q Consensus 633 ~~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~d~~ 712 (985)
...++++.+++++|.+. .+.+++|++++..++.++.. ..+++.|+++...|++....+...|.+++.++.+
T Consensus 92 ~~~~Le~~la~~~g~~~-~i~~~sG~~a~~~~i~~l~~------~~~g~~vi~~~~~h~s~~~~~~~~g~~~~~~~~~-- 162 (410)
T PRK13392 92 PHVLLERELADLHGKES-ALLFTSGYVSNDAALSTLGK------LLPGCVILSDALNHASMIEGIRRSGAEKQVFRHN-- 162 (410)
T ss_pred HHHHHHHHHHHHhCCCC-EEEECcHHHHHHHHHHHHhc------CCCCCEEEEehhhhHHHHHHHHHcCCeEEEEeCC--
Confidence 45689999999999754 56777888777555543321 1256777777778887766777889998877653
Q ss_pred CCCCHHHHHHHHHhcC-CCEEEEEEEcCC-CccccccCHHHHHHHHHHcCCEEEEEccccccccCCC------CCC-ccC
Q 001989 713 GNINIEELRKAAEANR-DNLSTLMVTYPS-THGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLT------SPG-YIG 783 (985)
Q Consensus 713 g~iD~e~L~~~i~~~~-~~t~~Vvv~~pn-~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~------~pg-~~g 783 (985)
|.+++++.+++.. +++++|++++|+ .+|.+. |+++|.++|+++|+++++|++|..+..+-. .++ ...
T Consensus 163 ---d~~~l~~~l~~~~~~~t~~v~i~~~~n~tG~~~-~l~~i~~l~~~~~~~livDea~~~g~~g~~g~g~~~~~~~~~~ 238 (410)
T PRK13392 163 ---DLADLEEQLASVDPDRPKLIAFESVYSMDGDIA-PIEAICDLADRYNALTYVDEVHAVGLYGARGGGIAERDGLMDR 238 (410)
T ss_pred ---CHHHHHHHHHhccCCCCEEEEEeCCCCCCcccc-cHHHHHHHHHHcCCEEEEECCccccCcCCCCCchhhhccCCCC
Confidence 6777887775432 578999999985 699887 899999999999999999999864331110 011 114
Q ss_pred CcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHh
Q 001989 784 ADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMM 863 (985)
Q Consensus 784 ~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~l 863 (985)
+|+++.+++|+|+. +| |++++++++.+.+.... ..... +... ++..+.++.+.|..+
T Consensus 239 ~div~~tlsK~~g~------~G-G~~~~~~~~~~~l~~~~-----------~~~~~-s~~~----~~~~~~a~~aaL~~~ 295 (410)
T PRK13392 239 IDMIQGTLAKAFGC------LG-GYIAASADLIDFVRSFA-----------PGFIF-TTAL----PPAVAAGATAAIRHL 295 (410)
T ss_pred CcEEEEEChHhhhc------cc-chhhcCHHHHHHHHHhC-----------cchhc-cCcC----CHHHHHHHHHHHHHH
Confidence 68988899999853 33 67777766654332110 00000 1111 112233334455544
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHH-HCCCccCCCCCC-
Q 001989 864 GSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLM-DYGFHGPTMSWP- 940 (985)
Q Consensus 864 g~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~-~~Gi~~~~~~~p- 940 (985)
...+ +..++..++++++.+.|++ ++++. + +...+ +.+.+. .+....+++++|. ++||.+....+|
T Consensus 296 ~~~~--~~~~~~~~~~~~l~~~L~~~g~~~~-~-~~~~~---~~i~~~-----~~~~~~~~~~~L~~~~GI~v~~~~~p~ 363 (410)
T PRK13392 296 KTSQ--TERDAHQDRVAALKAKLNANGIPVM-P-SPSHI---VPVMVG-----DPTLCKAISDRLMSEHGIYIQPINYPT 363 (410)
T ss_pred hcCH--HHHHHHHHHHHHHHHHHHHcCCCCC-C-CCCCE---EEEEeC-----CHHHHHHHHHHHHHhCCEEEeeeCCCC
Confidence 3322 3345677888999999987 55542 2 21222 223322 0123568999886 579998765444
Q ss_pred C---CCEEEEeccCCCCHHHHHHHHccCChhHHHHhh
Q 001989 941 V---PGTLMIEPTESESKSWTGIVMLSSPSEKKLHRL 974 (985)
Q Consensus 941 ~---~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~ 974 (985)
+ ...+||+++..+|++|+|+ ++++|+++++++
T Consensus 364 ~~~~~~~lRis~~~~~t~edid~--l~~aL~~~~~~~ 398 (410)
T PRK13392 364 VPRGTERLRITPTPLHDDEDIDA--LVAALVAIWDRL 398 (410)
T ss_pred CCCCCceEEEEECCCCCHHHHHH--HHHHHHHHHHHc
Confidence 1 2689999999999999999 889998887654
|
|
| >PRK00854 rocD ornithine--oxo-acid transaminase; Reviewed | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.4e-17 Score=191.66 Aligned_cols=321 Identities=17% Similarity=0.144 Sum_probs=202.1
Q ss_pred ccccccccCCCccccccccccccccccCCCCchhhhhhHHHHHHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHH
Q 001989 592 IPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAY 671 (985)
Q Consensus 592 ~~lG~~t~~~~~~~~~~~~~~~~f~~~~p~~p~e~~~G~~~~~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~ 671 (985)
..+|++++.+..+...+...........+ .+...++++.+++++|.+. .++++||++|++++++++|.|
T Consensus 53 ~~~Gh~~~~i~~a~~~~~~~~~~~~~~~~----------~~~~~~l~~~l~~~~~~~~-~~~~~SGs~A~e~al~~a~~~ 121 (401)
T PRK00854 53 VNQGHCHPKILAAMVEQAGRLTLTSRAFR----------NDQLAPLYEELAALTGSHK-VLPMNSGAEAVETAIKAVRKW 121 (401)
T ss_pred ccCCCCCHHHHHHHHHHHhhccccccccC----------CHHHHHHHHHHHhhCCCCE-EEEeCCcHHHHHHHHHHHHHH
Confidence 45788776666554433322211111111 1235678899999998753 567789999999999998876
Q ss_pred HHh-cCCC-CCCEEEE-cCCCCcccHHHHHHC------------CcEEEEEcCCCCCCCCHHHHHHHHHhcCCCEEEEEE
Q 001989 672 HKA-RGDH-HRNVCII-PVSAHGTNPATAAMC------------GMKIVSVGTDAKGNINIEELRKAAEANRDNLSTLMV 736 (985)
Q Consensus 672 ~~~-~g~~-~~~~IIv-~~~~Hg~~~~~a~~~------------G~~vv~v~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv 736 (985)
... +|.. ++++||+ +..+||......... ...+..+|. .|+++|++++. +++++|++
T Consensus 122 ~~~~~g~~~~~~~vi~~~~~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~le~~i~---~~~~aii~ 193 (401)
T PRK00854 122 GYEVKGVPEGQAEIIVCADNFHGRTLSIVGFSTDPDARGGFGPFTPGFRVVPF-----GDAEALEAAIT---PNTVAFLV 193 (401)
T ss_pred HHhccCCCCCCceEEEECCCcCCccHHHHhccCCccccccCCCCCCCeEEeCC-----CCHHHHHHHhC---CCeEEEEE
Confidence 321 1221 2356655 678899765443211 123445554 48999999997 78999999
Q ss_pred EcC-CCcccccc---CHHHHHHHHHHcCCEEEEEccccccccCCC-----CCCccCCcEEEeCCcccccccCCCCCCceE
Q 001989 737 TYP-STHGVYEE---GIDEICKIIHDNGGQVYMDGANMNAQVGLT-----SPGYIGADVCHLNLHKTFCIPHGGGGPGMG 807 (985)
Q Consensus 737 ~~p-n~~G~i~~---di~eI~~la~~~galliVD~a~~~~~~~l~-----~pg~~g~Di~~~s~hK~l~~p~g~GGPg~G 807 (985)
++| |.+|.+.+ .+++|+++|+++|+++++|++|. +++-.. ......+|+++++ |+|+ +|...+|
T Consensus 194 e~~~~~~G~~~~~~~~l~~l~~l~~~~gi~lI~DEv~~-g~g~~g~~~~~~~~g~~~D~~~~~--K~l~----gg~~~ig 266 (401)
T PRK00854 194 EPIQGEAGVIIPPAGYFTRVRELCTANNVTLILDEIQT-GLGRTGKLLAEEHEGIEADVTLIG--KALS----GGFYPVS 266 (401)
T ss_pred ccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhh-CCCCCchHhHHhhcCCCCCEEEec--cccc----CCccCeE
Confidence 998 46888862 19999999999999999999984 332111 0011246988874 8884 2335678
Q ss_pred EEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhh
Q 001989 808 PIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLE 887 (985)
Q Consensus 808 ~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~ 887 (985)
++++++++...+..... ... +.+++..++++.+.|..+..++ ..++..++++++.+.|+
T Consensus 267 ~v~~~~~~~~~l~~~~~--------------~~t----~~~~~~~~aa~~a~L~~l~~~~---~~~~~~~~~~~l~~~L~ 325 (401)
T PRK00854 267 AVLSNSEVLGVLKPGQH--------------GST----FGGNPLACAVARAALKVLTEEG---MIENAAEMGAYFLEGLR 325 (401)
T ss_pred EEEEcHHHHhcccCCCC--------------CCC----CCcCHHHHHHHHHHHHHHHHcC---HHHHHHHHHHHHHHHHH
Confidence 88888877665532100 001 1123444455556666554433 34566677888999887
Q ss_pred c-cCCeeec-CCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCCCCCCCEEEEeccCCCCHHHHHHHHccC
Q 001989 888 K-HYPILFR-GVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKSWTGIVMLSS 965 (985)
Q Consensus 888 ~-g~~l~~~-~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~~p~~~~lris~t~~~t~eeId~~~~~~ 965 (985)
+ ....... ...+. + +.+.+.. .+.+..++++.|.++||.+.... .+.+|++|+..+|++|||+ +++
T Consensus 326 ~~~~~~~~~~~g~g~-~--~~i~~~~----~~~~~~~~~~~L~~~GV~v~~~~---~~~lR~~p~~~~t~e~i~~--~i~ 393 (401)
T PRK00854 326 SIRSNIVREVRGRGL-M--LAVELEP----EAGGARQYCEALKERGLLAKDTH---DHTIRLAPPLVITREQVDW--ALE 393 (401)
T ss_pred hhccCceEEEeccce-E--EEEEEec----CchhHHHHHHHHHHCCeEEecCC---CCEEEEeCCcccCHHHHHH--HHH
Confidence 6 3322111 11121 1 2233321 12346789999999999985432 3799999999999999999 778
Q ss_pred ChhHHH
Q 001989 966 PSEKKL 971 (985)
Q Consensus 966 ~l~~~~ 971 (985)
.|++++
T Consensus 394 ~l~~~l 399 (401)
T PRK00854 394 QIAKVL 399 (401)
T ss_pred HHHHHh
Confidence 887765
|
|
| >PRK07179 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=9.6e-18 Score=195.34 Aligned_cols=270 Identities=17% Similarity=0.185 Sum_probs=186.0
Q ss_pred HHHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEe---C
Q 001989 211 ESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVS---D 287 (985)
Q Consensus 211 ~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v---~ 287 (985)
+...++++.+|+++|.+. +.++++|+.+.++++.++. +++++|+++...|+++...++. .|++++.+ |
T Consensus 99 ~~~~~le~~la~~~g~~~--~~~~~sG~~An~~~l~~l~---~~g~~v~~~~~~h~s~~~~~~~----~g~~~~~~~~~d 169 (407)
T PRK07179 99 SPKPQFEKKLAAFTGFES--CLLCQSGWAANVGLLQTIA---DPNTPVYIDFFAHMSLWEGVRA----AGAQAHPFRHND 169 (407)
T ss_pred hHHHHHHHHHHHHhCCCc--EEEECCHHHHHHHHHHHhC---CCCCEEEEECCcCHHHHHHHHH----CCCeEEEecCCC
Confidence 455677789999999875 5678899887777665542 3789999999999999877643 46665554 5
Q ss_pred chhhhc-cCC-CEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCCCCC-----cc----cceEEEec
Q 001989 288 LKDIDY-KSG-DVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKPPG-----EL----GADIVVGS 355 (985)
Q Consensus 288 ~~~l~~-l~~-~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~~~~-----~~----GaDi~v~s 355 (985)
++++++ +++ ++++|++.++ |++|.+.|+++|.++|+++|+++++| +.+++|.....+ .+ ++|++++|
T Consensus 170 ~~~l~~~l~~~~~~lV~v~~v~n~tG~i~pl~~I~~l~~~~~~~livD-ea~~~g~~g~~g~g~~~~~~~~~~vdi~~~S 248 (407)
T PRK07179 170 VDHLRRQIERHGPGIIVVDSVYSTTGTIAPLADIVDIAEEFGCVLVVD-ESHSLGTHGPQGAGLVAELGLTSRVHFITAS 248 (407)
T ss_pred HHHHHHHHHhcCCeEEEECCCCCCCCccccHHHHHHHHHHcCCEEEEE-CcccccCcCCCCCchHHhcCCCCCCCEEEee
Confidence 567777 654 4777888777 78999999999999999999999994 344554332111 22 46999999
Q ss_pred C-ccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHH
Q 001989 356 A-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMY 434 (985)
Q Consensus 356 ~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~ 434 (985)
. |.+++ ..|++++++++.+.++.. ..+ + ...+|.+ ++...++.+++
T Consensus 249 ~sK~~g~-------~~G~l~~~~~~~~~~~~~---------~~~-~------------~~~~t~~---~~~~aa~~aal- 295 (407)
T PRK07179 249 LAKAFAG-------RAGIITCPRELAEYVPFV---------SYP-A------------IFSSTLL---PHEIAGLEATL- 295 (407)
T ss_pred chHhhhc-------cCeEEEeCHHHHHHHHHh---------CcC-e------------eeCCCCC---HHHHHHHHHHH-
Confidence 7 87752 257899988776654200 000 0 0012222 12333333333
Q ss_pred HHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCCCcceEEEecCC---HHHHHHHHHHcCceeeee-------cC
Q 001989 435 AVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDTVKVKCAD---AHAIASAAYKIEMNLRVV-------DS 504 (985)
Q Consensus 435 l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~---~~~v~~~L~~~GI~~~~~-------~~ 504 (985)
..+.. .+++.++..++.+++++.|+++| +++.+.. ..+.+..+. +..+.+.|.++||.++.. ..
T Consensus 296 -~~~~~--~~~~~~~l~~~~~~l~~~L~~~g-~~v~~~~--~i~~l~~~~~~~~~~~~~~L~~~GI~~~~~~~p~~~~~~ 369 (407)
T PRK07179 296 -EVIES--ADDRRARLHANARFLREGLSELG-YNIRSES--QIIALETGSERNTEVLRDALEERNVFGAVFCAPATPKNR 369 (407)
T ss_pred -HHHhc--CHHHHHHHHHHHHHHHHHHHHcC-CCCCCCC--CEEEEEeCCHHHHHHHHHHHHHCCceEeeecCCCCCCCC
Confidence 33322 25677889999999999999987 7766322 233444432 577888999999974322 13
Q ss_pred CeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 505 NTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 505 ~~lris~t~~~t~edId~li~aL~~ 529 (985)
+.+|++++..+|++|||+++++|.+
T Consensus 370 ~~lRis~~~~~t~edi~~~~~~l~~ 394 (407)
T PRK07179 370 NLIRLSLNADLTASDLDRVLEVCRE 394 (407)
T ss_pred ceEEEEECCCCCHHHHHHHHHHHHH
Confidence 6899999999999999999999974
|
|
| >PRK13393 5-aminolevulinate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.2e-17 Score=194.41 Aligned_cols=294 Identities=16% Similarity=0.170 Sum_probs=193.1
Q ss_pred HHHHHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcCC
Q 001989 631 QEMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTD 710 (985)
Q Consensus 631 ~~~~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~d 710 (985)
.....++++.+++++|.+. .++++||++++++++.++.. . .+++.|++...+|++........|.+++.++.
T Consensus 89 ~~~~~~le~~la~~~g~~~-~~~~~SG~~An~~ai~~l~~-----~-~~g~~I~~~~~~H~s~~~~~~~~g~~~~~~~~- 160 (406)
T PRK13393 89 NHYHVLLEAELADLHGKEA-ALLFTSGYVSNWAALSTLGS-----R-LPGCVILSDELNHASMIEGIRHSRAEKRIFRH- 160 (406)
T ss_pred hHHHHHHHHHHHHHhCCCc-EEEeCCcHHHHHHHHHHhhc-----C-CCCCEEEEccchhHHHHHHHHHcCCeEEEeCC-
Confidence 3456789999999999754 46677888877666654321 1 24567777788898877777778888888876
Q ss_pred CCCCCCHHHHHHHHHhcC-CCEEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccc-cCCCC-----CC-c
Q 001989 711 AKGNINIEELRKAAEANR-DNLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQ-VGLTS-----PG-Y 781 (985)
Q Consensus 711 ~~g~iD~e~L~~~i~~~~-~~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~galliVD~a~~~~~-~~l~~-----pg-~ 781 (985)
.|++++++.++... +++++|+++++ |.+|.+. |+++|.++|+++|+++++|++|..+. +..+. ++ .
T Consensus 161 ----~d~~~l~~~l~~~~~~~~~~v~~~~v~~~~G~~~-~l~~i~~l~~~~~~~livDea~~~g~~g~~G~g~~~~~~~~ 235 (406)
T PRK13393 161 ----NDPADLERKLSDLDPHRPKLVAFESVYSMDGDIA-PIAEICDVAEKHGAMTYLDEVHAVGLYGPRGGGIAEREGLA 235 (406)
T ss_pred ----CCHHHHHHHHHhccCCCCEEEEEcCCCCCCCchh-CHHHHHHHHHHcCCEEEEECCccccccCCCCCchhhhcCCC
Confidence 38899998886432 36788889887 4689998 89999999999999999999996444 21110 11 1
Q ss_pred cCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHH
Q 001989 782 IGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIA 861 (985)
Q Consensus 782 ~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~ 861 (985)
...|+++.++.|.|+. +| |++++++++.+.+.... +....++ + +++..++++.+.+.
T Consensus 236 ~~~~i~~~tlsKa~g~------~G-G~~~~~~~~~~~l~~~~-----------~~~~~t~-~----~~p~~~aa~~aaL~ 292 (406)
T PRK13393 236 DRLTIIEGTLAKAFGV------MG-GYITGSAALCDFIRSFA-----------SGFIFTT-S----LPPAVAAGALASVR 292 (406)
T ss_pred CCCeEEEEeCchhhcc------cC-ceeeCCHHHHHHHHHhC-----------cCceecC-c----cCHHHHHHHHHHHH
Confidence 1258888888898853 23 67777766554432110 0000000 0 12233344455566
Q ss_pred HhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHH-CCCccCCCCC
Q 001989 862 MMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMD-YGFHGPTMSW 939 (985)
Q Consensus 862 ~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~-~Gi~~~~~~~ 939 (985)
.+...+. ..++..+++++++++|++ ++++. .+ .++. +.+.+. ......++.++|.+ +||++....+
T Consensus 293 ~~~~~~~--~~~~~~~~~~~l~~~L~~~g~~~~-~~-~~~i---~~v~~~-----~~~~~~~l~~~L~~~~Gi~v~~~~~ 360 (406)
T PRK13393 293 HLKASSA--ERERHQDRVARLRARLDKAGIPHL-PN-PSHI---VPVMVG-----DPVLCKQISDELLDRYGIYVQPINY 360 (406)
T ss_pred HHhhCHH--HHHHHHHHHHHHHHHHHHcCCCcC-CC-CCCe---EEEEeC-----CHHHHHHHHHHHHHhCCEEEEeECC
Confidence 5543332 224557788999999986 55442 22 1222 222222 01235789999987 5999876544
Q ss_pred C-C---CCEEEEeccCCCCHHHHHHHHccCChhHHHHhh
Q 001989 940 P-V---PGTLMIEPTESESKSWTGIVMLSSPSEKKLHRL 974 (985)
Q Consensus 940 p-~---~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~ 974 (985)
| + .+.+||+++.++|++|||+ +++.|++++..+
T Consensus 361 p~~p~g~~~iRis~~~~~t~edid~--l~~~l~~~~~~~ 397 (406)
T PRK13393 361 PTVPRGTERLRITPSPLHTDADIEH--LVQALSEIWARL 397 (406)
T ss_pred CCCCCCCceEEEEECCCCCHHHHHH--HHHHHHHHHHhc
Confidence 4 1 2679999999999999999 788888887654
|
|
| >PRK03244 argD acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.1e-17 Score=191.97 Aligned_cols=282 Identities=17% Similarity=0.174 Sum_probs=189.4
Q ss_pred HHHHHHHHHHhCCC--ccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEE-cCCCCcccHHHHHHCCc---------
Q 001989 635 NNLGEWLCTITGFD--SFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCII-PVSAHGTNPATAAMCGM--------- 702 (985)
Q Consensus 635 ~e~~~~la~l~G~~--~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv-~~~~Hg~~~~~a~~~G~--------- 702 (985)
.++++++++++|.+ ...++.+||++|+++++.+++.. ++++||+ ...+||.........|.
T Consensus 88 ~~la~~l~~~~~~~~~~~v~~~~sgsea~~~al~~~~~~-------g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~ 160 (398)
T PRK03244 88 IALAERLVELLGAPEGGRVFFCNSGAEANEAAFKLARLT-------GRTKIVAAEGGFHGRTMGALALTGQPAKRAPFEP 160 (398)
T ss_pred HHHHHHHHHhCCCCCCCEEEEeCchHHHHHHHHHHHHHH-------CCCeEEEECCCcCCccHHHHhccCCcccccCCCC
Confidence 37888999998854 24567789999998887766642 2345555 45788877655443332
Q ss_pred ---EEEEEcCCCCCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccC---HHHHHHHHHHcCCEEEEEccccccccC
Q 001989 703 ---KIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEG---IDEICKIIHDNGGQVYMDGANMNAQVG 775 (985)
Q Consensus 703 ---~vv~v~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~d---i~eI~~la~~~galliVD~a~~~~~~~ 775 (985)
++..+|. .|++++++++. +++++|+++.+ |.+|.+.++ +++|.++|+++|+++|+|+++. ++
T Consensus 161 ~~~~~~~~~~-----~d~~~l~~~~~---~~~~aviiep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~-g~-- 229 (398)
T PRK03244 161 LPGGVEHVPY-----GDVDALAAAVD---DDTAAVFLEPIQGEAGVVPPPAGYLAAAREITDRHGALLVLDEVQT-GI-- 229 (398)
T ss_pred CCCCceEeCC-----CCHHHHHHhhc---CCeEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecccc-CC--
Confidence 2334443 38999999886 78999999876 578988633 8999999999999999999984 22
Q ss_pred CCCCC--------ccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcch
Q 001989 776 LTSPG--------YIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPW 847 (985)
Q Consensus 776 l~~pg--------~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~ 847 (985)
.+.+ ...+|++++ .|+|+ +|..+|++++++++.+.+..... .+++.
T Consensus 230 -gr~g~~~~~~~~~~~pDi~t~--sK~l~-----~G~~ig~~~~~~~~~~~~~~~~~------------------~~t~~ 283 (398)
T PRK03244 230 -GRTGAWFAHQHDGVTPDVVTL--AKGLG-----GGLPIGACLAFGPAADLLTPGLH------------------GSTFG 283 (398)
T ss_pred -cccchHHhhhhhCCCCCEEEE--chhhh-----CCcccEEEEEcHHHHhhccCCCC------------------cCCCC
Confidence 2222 223788766 48884 34568888888776655432100 01122
Q ss_pred hhhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHH
Q 001989 848 GSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKR 926 (985)
Q Consensus 848 g~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~ 926 (985)
++++.++++.++|..+..+.+ .++..++.+++++.|++ ++++.........+ +.+.++ ......+.++
T Consensus 284 ~~~~~~aaa~a~l~~~~~~~~---~~~~~~~~~~l~~~L~~~~~~~~~~v~g~g~~--~~i~~~------~~~~~~~~~~ 352 (398)
T PRK03244 284 GNPVACAAALAVLDTIASEGL---LENAERLGEQLRAGIEALGHPLVDHVRGRGLL--LGIVLT------APVAKAVEAA 352 (398)
T ss_pred CCHHHHHHHHHHHHHHHhccH---HHHHHHHHHHHHHHHHhcCCCceeeEeeccEE--EEEEEe------ccHHHHHHHH
Confidence 355666667777777765443 34666778889999986 33221110001111 334443 1146789999
Q ss_pred HHHCCCccCCCCCCCCCEEEEeccCCCCHHHHHHHHccCChhHHHHhhcc
Q 001989 927 LMDYGFHGPTMSWPVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRLKM 976 (985)
Q Consensus 927 L~~~Gi~~~~~~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~~~ 976 (985)
|.++|+.+.... .+.||++|+..+|++|||+ ++++|++++.++++
T Consensus 353 l~~~Gv~~~~~~---~~~iR~~p~~~~t~~~i~~--~~~~l~~~l~~~~~ 397 (398)
T PRK03244 353 AREAGFLVNAVA---PDVIRLAPPLIITDAQVDA--FVAALPAILDAAAA 397 (398)
T ss_pred HHHCCeEEeecC---CCEEEEECCCcCCHHHHHH--HHHHHHHHHHhccc
Confidence 999999985432 3789999999999999999 88999999987764
|
|
| >PLN02483 serine palmitoyltransferase | Back alignment and domain information |
|---|
Probab=99.79 E-value=4e-17 Score=193.27 Aligned_cols=315 Identities=17% Similarity=0.214 Sum_probs=203.4
Q ss_pred CccceecCCCCCCCCCcHHHHHHHHhCCccccccCCChhhHhhhHHHHHHHHHHHHHHhcCCCCcceeeccchHHHHHHH
Q 001989 165 KVYKSFIGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAM 244 (985)
Q Consensus 165 ~~~~~~lG~g~y~~~~p~~v~~~i~~~~~~~t~~~pyq~e~sqg~l~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~ 244 (985)
.+..||||.+-.+...++.+.+++. + +.+. ...+....|+...+.++++.+|+++|.+. ..++.+|+++..++
T Consensus 105 ~~s~~YLgl~~~~~~~~~~~~~ai~-~--~g~~--~~~sr~~~g~~~~~~ele~~lA~~~g~~~--ai~~~~G~~an~~~ 177 (489)
T PLN02483 105 LGSYNYLGFAAADEYCTPRVIESLK-K--YSAS--TCSSRVDGGTTKLHRELEELVARFVGKPA--AIVFGMGYATNSTI 177 (489)
T ss_pred eecCCccCcCCCCHHHHHHHHHHHH-H--hCCC--CCccccccCCcHHHHHHHHHHHHHhCCCc--EEEECCHHHHHHHH
Confidence 3456799998533334444444533 3 2222 22445556788899999999999999765 55666676655544
Q ss_pred HHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc---hhhhc-c-------CCCE-----eEEEEEcC--
Q 001989 245 AMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL---KDIDY-K-------SGDV-----CGVLVQYP-- 306 (985)
Q Consensus 245 ~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~---~~l~~-l-------~~~t-----~~V~v~~p-- 306 (985)
+.++ . ++||+|++++..|+++...++ ..|++++.++. +++++ + .++| +.+++..+
T Consensus 178 i~al-~--~~Gd~Vi~d~~~h~s~~~~~~----~~Ga~v~~~~~~d~~~le~~l~~~i~~~~p~t~~p~~k~livve~v~ 250 (489)
T PLN02483 178 IPAL-I--GKGGLIISDSLNHNSIVNGAR----GSGATIRVFQHNTPSHLEEVLREQIAEGQPRTHRPWKKIIVIVEGIY 250 (489)
T ss_pred HHHh-C--CCCCEEEEcchhhHHHHHHHH----HcCCeEEEEeCCCHHHHHHHHHhhhhccccccccCCceEEEEECCCC
Confidence 4443 2 389999999999999998864 35788877743 44443 2 1333 55555544
Q ss_pred CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCCCC----------CcccceEEEecC-ccccccCCCCCCcEEEEEE
Q 001989 307 GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKPP----------GELGADIVVGSA-QRFGVPMGYGGPHAAFLAT 375 (985)
Q Consensus 307 n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~~~----------~~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~ 375 (985)
|+.|.+.|+++|.++||++|+++++| +.+++|.+... ...++||+++|. |+|+. .| |++++
T Consensus 251 s~~G~~~~l~~I~~la~~~~~~livD-Ea~s~g~~G~~G~g~~~~~~v~~~~~dI~~~SfSKs~g~---~G----G~i~~ 322 (489)
T PLN02483 251 SMEGELCKLPEIVAVCKKYKAYVYLD-EAHSIGAVGKTGRGVCELLGVDPADVDIMMGTFTKSFGS---CG----GYIAG 322 (489)
T ss_pred CCCCcccCHHHHHHHHHHcCCEEEEE-CcCccCccCCCCCchHHhcCCCcccCcEEEEecchhccc---Cc----eEEEc
Confidence 77999999999999999999999994 45555433211 124679999997 88863 12 79998
Q ss_pred chhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHHHH-hCcch---HHHHHHHHH
Q 001989 376 SQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVY-HGPEG---LKTIAQRVH 451 (985)
Q Consensus 376 ~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~-~g~~G---l~~i~~~~~ 451 (985)
++++++.+.... +++. . ++ .+++....+..+++ .. .+.+| .++..++..
T Consensus 323 ~~~li~~l~~~~----------~~~~------------~-~~--~~~p~~~~~~~aaL--~~l~~~~g~~~~~~~~~~l~ 375 (489)
T PLN02483 323 SKELIQYLKRTC----------PAHL------------Y-AT--SMSPPAVQQVISAI--KVILGEDGTNRGAQKLAQIR 375 (489)
T ss_pred CHHHHHHHHHhC----------cccc------------c-cC--CcCHHHHHHHHHHH--HHHHhCccccchHHHHHHHH
Confidence 888877652100 0000 0 00 01112222222333 22 22222 344567888
Q ss_pred HHHHHHHHHHhcCCCeEEcCCCCcceE--EEecCC-HHHHHHHHHHcCceeeee-------cCCeEEEEeccCCCHHHHH
Q 001989 452 GLAGTFALGLKKLGTVEVQGLPFFDTV--KVKCAD-AHAIASAAYKIEMNLRVV-------DSNTVTASFDETTTLEDVD 521 (985)
Q Consensus 452 ~~a~~l~~~L~~~g~~~~~~~~~~~~~--~~~~~~-~~~v~~~L~~~GI~~~~~-------~~~~lris~t~~~t~edId 521 (985)
++.+++++.|+++| +++........+ .+..+. ..++.++|.++||.+... ..+.+|++++..+|+||||
T Consensus 376 ~~~~~l~~~L~~~G-~~v~~~~~sp~~~l~l~~~~~~~~~~~~Ll~~GI~v~~~~fp~~p~~~~~vRi~isa~~t~edId 454 (489)
T PLN02483 376 ENSNFFRSELQKMG-FEVLGDNDSPVMPIMLYNPAKIPAFSRECLKQNVAVVVVGFPATPLLLARARICISASHSREDLI 454 (489)
T ss_pred HHHHHHHHHHHHCC-CcccCCCCCCEEEEEECCHHHHHHHHHHHHHCCcEEeeeCCCCCCCCCceEEEEeCCCCCHHHHH
Confidence 99999999999997 877632211122 222222 668999999999987532 1267999999999999999
Q ss_pred HHHHHHhC
Q 001989 522 KLFIVFAG 529 (985)
Q Consensus 522 ~li~aL~~ 529 (985)
+++++|.+
T Consensus 455 ~~l~~L~~ 462 (489)
T PLN02483 455 KALEVISE 462 (489)
T ss_pred HHHHHHHH
Confidence 99999974
|
|
| >PLN02483 serine palmitoyltransferase | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.2e-17 Score=195.41 Aligned_cols=299 Identities=15% Similarity=0.105 Sum_probs=193.6
Q ss_pred hHHHHHHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEc
Q 001989 629 GYQEMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVG 708 (985)
Q Consensus 629 G~~~~~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~ 708 (985)
|....+.++++.+|+++|.+.+ +.+++|..++.+++.++. +++|+||+++..|.+....++..|++++.++
T Consensus 143 g~~~~~~ele~~lA~~~g~~~a-i~~~~G~~an~~~i~al~--------~~Gd~Vi~d~~~h~s~~~~~~~~Ga~v~~~~ 213 (489)
T PLN02483 143 GTTKLHRELEELVARFVGKPAA-IVFGMGYATNSTIIPALI--------GKGGLIISDSLNHNSIVNGARGSGATIRVFQ 213 (489)
T ss_pred CCcHHHHHHHHHHHHHhCCCcE-EEECCHHHHHHHHHHHhC--------CCCCEEEEcchhhHHHHHHHHHcCCeEEEEe
Confidence 3345577899999999997654 555667665543333321 4789999999988888777889999999999
Q ss_pred CCCCCCCCHHHHHHHHHhc----CCCE-----EEEEEEcC--CCccccccCHHHHHHHHHHcCCEEEEEccccccccCC-
Q 001989 709 TDAKGNINIEELRKAAEAN----RDNL-----STLMVTYP--STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGL- 776 (985)
Q Consensus 709 ~d~~g~iD~e~L~~~i~~~----~~~t-----~~Vvv~~p--n~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l- 776 (985)
.+ |+++|++.+++. .++| +.+++..+ |..|.+. ++++|.++|+++|+++++|++|..+..+.
T Consensus 214 ~~-----d~~~le~~l~~~i~~~~p~t~~p~~k~livve~v~s~~G~~~-~l~~I~~la~~~~~~livDEa~s~g~~G~~ 287 (489)
T PLN02483 214 HN-----TPSHLEEVLREQIAEGQPRTHRPWKKIIVIVEGIYSMEGELC-KLPEIVAVCKKYKAYVYLDEAHSIGAVGKT 287 (489)
T ss_pred CC-----CHHHHHHHHHhhhhccccccccCCceEEEEECCCCCCCCccc-CHHHHHHHHHHcCCEEEEECcCccCccCCC
Confidence 74 778888777521 1232 55555554 4689888 89999999999999999999986432211
Q ss_pred -------CCCCccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhh
Q 001989 777 -------TSPGYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGS 849 (985)
Q Consensus 777 -------~~pg~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~ 849 (985)
......+.||++.+++|+|++ . +|++++++++.+.+.....+ ...+... +
T Consensus 288 G~g~~~~~~v~~~~~dI~~~SfSKs~g~------~-GG~i~~~~~li~~l~~~~~~-----------~~~~~~~-----~ 344 (489)
T PLN02483 288 GRGVCELLGVDPADVDIMMGTFTKSFGS------C-GGYIAGSKELIQYLKRTCPA-----------HLYATSM-----S 344 (489)
T ss_pred CCchHHhcCCCcccCcEEEEecchhccc------C-ceEEEcCHHHHHHHHHhCcc-----------ccccCCc-----C
Confidence 000123579999999999853 2 28998887776554321000 0001111 1
Q ss_pred hHHHHHHHHHHHHhc-H---HHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHH
Q 001989 850 ALILPISYTYIAMMG-S---KGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVA 924 (985)
Q Consensus 850 ~~~~~~a~a~l~~lg-~---eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~ 924 (985)
+..++.+.+.|+.+- . +-..+..++..++++++++.|++ ++.+. .....+.. .++-+. .....+++
T Consensus 345 p~~~~~~~aaL~~l~~~~g~~~~~~~~~~l~~~~~~l~~~L~~~G~~v~-~~~~sp~~--~l~l~~------~~~~~~~~ 415 (489)
T PLN02483 345 PPAVQQVISAIKVILGEDGTNRGAQKLAQIRENSNFFRSELQKMGFEVL-GDNDSPVM--PIMLYN------PAKIPAFS 415 (489)
T ss_pred HHHHHHHHHHHHHHHhCccccchHHHHHHHHHHHHHHHHHHHHCCCccc-CCCCCCEE--EEEECC------HHHHHHHH
Confidence 112222233344321 1 11234456788899999999987 55442 11112222 111111 12356799
Q ss_pred HHHHHCCCccCCCCCC----CCCEEEEeccCCCCHHHHHHHHccCChhHHHHhhcc
Q 001989 925 KRLMDYGFHGPTMSWP----VPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRLKM 976 (985)
Q Consensus 925 ~~L~~~Gi~~~~~~~p----~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~~~ 976 (985)
+.|.++||.+....+| ..+.+||+++..+|+||||+ +++.|+++...+.-
T Consensus 416 ~~Ll~~GI~v~~~~fp~~p~~~~~vRi~isa~~t~edId~--~l~~L~~~~~~~~~ 469 (489)
T PLN02483 416 RECLKQNVAVVVVGFPATPLLLARARICISASHSREDLIK--ALEVISEVGDLVGI 469 (489)
T ss_pred HHHHHCCcEEeeeCCCCCCCCCceEEEEeCCCCCHHHHHH--HHHHHHHHHHHhCc
Confidence 9999999987654454 13689999999999999999 78888888776543
|
|
| >cd00609 AAT_like Aspartate aminotransferase family | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.1e-17 Score=187.50 Aligned_cols=294 Identities=16% Similarity=0.141 Sum_probs=191.3
Q ss_pred hhHHHHHHHHHHHHHHHhCCC--c-cceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEE
Q 001989 628 QGYQEMFNNLGEWLCTITGFD--S-FSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKI 704 (985)
Q Consensus 628 ~G~~~~~~e~~~~la~l~G~~--~-~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~v 704 (985)
+|..++.+++++++...+|.. . ..++.++|++++.+++.++. .++++|++++..|+.+...++..|+++
T Consensus 36 ~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~t~a~~~~~~~~~--------~~g~~vl~~~~~~~~~~~~~~~~~~~~ 107 (350)
T cd00609 36 PGLPELREAIAEWLGRRGGVDVPPEEIVVTNGAQEALSLLLRALL--------NPGDEVLVPDPTYPGYEAAARLAGAEV 107 (350)
T ss_pred CCcHHHHHHHHHHHHHHhCCCCCcceEEEecCcHHHHHHHHHHhC--------CCCCEEEEcCCCchhHHHHHHHCCCEE
Confidence 566666666666666655531 2 23455666666644443331 357899999999999988899999999
Q ss_pred EEEcCCCCCCCCH--HHHHHHHHhcCCCEEEEEEEcCC-CccccccCHH---HHHHHHHHcCCEEEEEcccccccc-CC-
Q 001989 705 VSVGTDAKGNINI--EELRKAAEANRDNLSTLMVTYPS-THGVYEEGID---EICKIIHDNGGQVYMDGANMNAQV-GL- 776 (985)
Q Consensus 705 v~v~~d~~g~iD~--e~L~~~i~~~~~~t~~Vvv~~pn-~~G~i~~di~---eI~~la~~~galliVD~a~~~~~~-~l- 776 (985)
+.++.++++..+. +.++..++ +++++|++++|+ ++|.+. |++ +|.++|+++|+++++|+++..... +.
T Consensus 108 ~~i~~~~~~~~~~~~~~~~~~~~---~~~~~v~i~~~~~~tG~~~-~~~~l~~l~~~~~~~~~~~ivD~a~~~~~~~~~~ 183 (350)
T cd00609 108 VPVPLDEEGGFLLDLELLEAAKT---PKTKLLYLNNPNNPTGAVL-SEEELEELAELAKKHGILIISDEAYAELVYDGEP 183 (350)
T ss_pred EEEecccccCCccCHHHHHhhcC---ccceEEEEECCCCCCCccc-CHHHHHHHHHHHHhCCeEEEEecchhhceeCCcc
Confidence 9999987776665 66666655 789999999984 689987 555 445899999999999999853221 11
Q ss_pred ----CCCCccCCcEEEeCCcccccccCCCCCCceEEEEEcc-cccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhH
Q 001989 777 ----TSPGYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKK-HLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSAL 851 (985)
Q Consensus 777 ----~~pg~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~-~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~ 851 (985)
..++..+.|+++.|+||+|+. +|+++|++++++ .+.+.+.... . ..+.+.+ ..
T Consensus 184 ~~~~~~~~~~~~~~~~~s~~K~~~~----~g~~~G~i~~~~~~~~~~~~~~~-~-----------~~~~~~~------~~ 241 (350)
T cd00609 184 PPALALLDAYERVIVLRSFSKTFGL----PGLRIGYLIAPPEELLERLKKLL-P-----------YTTSGPS------TL 241 (350)
T ss_pred cccccCcCccCcEEEEeecccccCC----cccceEEEecCHHHHHHHHHHHH-H-----------hcccCCC------hH
Confidence 123456789999999999853 467899999987 6665543210 0 0011111 11
Q ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHC
Q 001989 852 ILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDY 930 (985)
Q Consensus 852 ~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~ 930 (985)
...++...+.... +++++..++..++++++.+.|++ +..... .+... ..+.+.++. +.....+.+.|.++
T Consensus 242 ~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~-~~~~g--~~~~~~~~~-----~~~~~~~~~~l~~~ 312 (350)
T cd00609 242 SQAAAAAALDDGE-EHLEELRERYRRRRDALLEALKELGPLVVV-KPSGG--FFLWLDLPE-----GDDEEFLERLLLEA 312 (350)
T ss_pred HHHHHHHHHhCcH-HHHHHHHHHHHHHHHHHHHHHHhcCCcccc-CCCcc--EEEEEecCC-----CChHHHHHHHHHhC
Confidence 1222233343322 56777777888999999999987 222211 11111 123344431 22456677788888
Q ss_pred CCccCCCC-CC--CCCEEEEeccCCCCHHHHHHHHccCChh
Q 001989 931 GFHGPTMS-WP--VPGTLMIEPTESESKSWTGIVMLSSPSE 968 (985)
Q Consensus 931 Gi~~~~~~-~p--~~~~lris~t~~~t~eeId~~~~~~~l~ 968 (985)
||.+.... +. ...++||++... ++||++ ++++|+
T Consensus 313 gi~i~~~~~~~~~~~~~iRi~~~~~--~~~i~~--~~~al~ 349 (350)
T cd00609 313 GVVVRPGSAFGEGGEGFVRLSFATP--EEELEE--ALERLA 349 (350)
T ss_pred CEEEecccccccCCCCeEEEEeeCC--HHHHHH--HHHHhh
Confidence 99876432 21 357999999887 999999 555554
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi |
| >PLN02955 8-amino-7-oxononanoate synthase | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.8e-17 Score=190.81 Aligned_cols=307 Identities=14% Similarity=0.128 Sum_probs=199.2
Q ss_pred hhhHHHHHHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHH---H---hcCCCCCCEEEEcCCCCcccHHHHHHC
Q 001989 627 AQGYQEMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYH---K---ARGDHHRNVCIIPVSAHGTNPATAAMC 700 (985)
Q Consensus 627 ~~G~~~~~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~---~---~~g~~~~~~IIv~~~~Hg~~~~~a~~~ 700 (985)
..|....++++|+.|++++|.+.+ +.+++|..|+.+++.++.... . ....++++.|+.....|.+....+++.
T Consensus 142 ~~G~~~~h~~LE~~LA~f~g~e~a-ll~sSGy~AN~~~i~aL~~~~~~~~~~~~~~~~~~d~i~~D~~~HaSI~dG~~ls 220 (476)
T PLN02955 142 ICGYTTYHRLLESSLADLKKKEDC-LVCPTGFAANMAAMVAIGSVASLLAASGKPLKNEKVAIFSDALNHASIIDGVRLA 220 (476)
T ss_pred cccChHHHHHHHHHHHHHHCCCcE-EEECChHHHHHHHHHHHhhccccccccccccCCCCcEEEEeccchHHHHHHHHhc
Confidence 456667788999999999999876 455678888876665542100 0 000123455666666676665556555
Q ss_pred ----CcEEEEEcCCCCCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccC
Q 001989 701 ----GMKIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVG 775 (985)
Q Consensus 701 ----G~~vv~v~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~ 775 (985)
+++++.++++ |+++|++++++++++.+.|++... +..|.+- |+++|.++|+++|++++||.+|..+..|
T Consensus 221 ~~~~~a~~~~f~HN-----D~~~Le~~L~~~~~~~~~Vv~EgV~SmdGdia-pL~eL~~L~~~~ga~LiVDEAH~~Gv~G 294 (476)
T PLN02955 221 ERQGNVEVFVYRHC-----DMYHLNSLLSSCKMKRKVVVTDSLFSMDGDFA-PMEELSQLRKKYGFLLVIDDAHGTFVCG 294 (476)
T ss_pred cccCCceEEEeCCC-----CHHHHHHHHHhCCCCceEEEEeCCCCCCCCcC-CHHHHHHHHHHcCcEEEEcccccCceec
Confidence 5888888875 999999999866555566655543 5689887 8999999999999999999999644332
Q ss_pred C---CCCCcc----CCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchh
Q 001989 776 L---TSPGYI----GADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWG 848 (985)
Q Consensus 776 l---~~pg~~----g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g 848 (985)
. +....+ ..||++.++.|.|+. .+|++++++++.+++... + +...+++ +.
T Consensus 295 ~~G~G~~e~~g~~~di~ii~~TLsKA~G~-------~GGfi~gs~~~~~~l~~~--~---------~~~ifSt-al---- 351 (476)
T PLN02955 295 ENGGGVAEEFNCEADVDLCVGTLSKAAGC-------HGGFIACSKKWKQLIQSR--G---------RSFIFST-AI---- 351 (476)
T ss_pred CCCCcHHHHhCCCCCCcEEEEeCccchhc-------cCceeecHHHHHHHHHHh--C---------CCCeecc-cc----
Confidence 2 101112 468899998898742 247888887666554311 0 0001111 11
Q ss_pred hhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhccCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHH
Q 001989 849 SALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLM 928 (985)
Q Consensus 849 ~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~ 928 (985)
.+..++++.+.+..+..+ .+..++..++.+|+++.+ ++.+ . .+. +.+-+. .......+.++|.
T Consensus 352 pp~~aaa~laal~l~~~~--~~~r~~L~~n~~~fr~~~--G~~~--~---sPI---~pI~ig-----~~~~a~~~~~~L~ 414 (476)
T PLN02955 352 PVPMAAAAYAAVVVARKE--KWRRKAIWERVKEFKALS--GVDI--S---SPI---ISLVVG-----NQEKALKASRYLL 414 (476)
T ss_pred cHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHhc--CCCC--C---CCE---EEEEeC-----CHHHHHHHHHHHH
Confidence 122233334444544332 234567788888888742 4442 1 122 222222 1234567899999
Q ss_pred HCCCccCCCCCC-CC---CEEEEeccCCCCHHHHHHHHccCChhHHHHhhccCCcccc
Q 001989 929 DYGFHGPTMSWP-VP---GTLMIEPTESESKSWTGIVMLSSPSEKKLHRLKMGRQIST 982 (985)
Q Consensus 929 ~~Gi~~~~~~~p-~~---~~lris~t~~~t~eeId~~~~~~~l~~~~~~~~~~~~~~~ 982 (985)
++||++..+.+| ++ ..+||+++..+|++|||+ ++++|.++......+.-++.
T Consensus 415 ~~Gi~v~~i~yPtVP~g~~rLRi~lsA~Ht~edId~--lv~~L~~~~~~~~~~~~~~~ 470 (476)
T PLN02955 415 KSGFHVMAIRPPTVPPNSCRLRVTLSAAHTTEDVKK--LITALSSCLDFDNTATYIPS 470 (476)
T ss_pred HCCCEEEEECCCCCCCCCceEEEeeCCCCCHHHHHH--HHHHHHHHHhhhcceeeecc
Confidence 999999887777 32 469999999999999999 88999988877666665443
|
|
| >KOG1402 consensus Ornithine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.78 E-value=6.4e-18 Score=177.60 Aligned_cols=335 Identities=16% Similarity=0.231 Sum_probs=223.8
Q ss_pred HHHHHHHHHHHhccccCcccccccccccccCCCccccccccccccccccCCCCchhhhhhHHHHHHHHHHHHHHHhCCCc
Q 001989 570 EHELLRYIHLLQSKELSLCHSMIPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFDS 649 (985)
Q Consensus 570 e~e~~~~l~~l~~~~~~~~~~~~~lG~~t~~~~~~~~~~~~~~~~f~~~~p~~p~e~~~G~~~~~~e~~~~la~l~G~~~ 649 (985)
+.|..+|++.|+.-. .+..|+|++++-.+...+.......+. --+....-++++.+.++||.+.
T Consensus 55 D~eGk~ylDflsays------aVnqGhchpki~~aLqeq~~kLtlssr----------afYnd~~~~f~~~vt~lf~~~k 118 (427)
T KOG1402|consen 55 DPEGKEYLDFLSAYS------AVNQGHCHPKIIKALQEQADKLTLSSR----------AFYNDVLGEFAEYVTKLFGYDK 118 (427)
T ss_pred CCCccchhhhhhhhh------hcccCCCCHHHHHHHHHHHhHhhhhhH----------HHhhhhHHHHHHHHHHhcCcce
Confidence 467889999998765 345799999887664444321101000 0012334578899999999876
Q ss_pred cceecCcHHHHHHHHHHHHHHHHH-hcCCCCC-CEEEE-cCCCCcccHHH---------HHHCC----cEEEEEcCCCCC
Q 001989 650 FSLQPNAGAAGEYAGLMVIRAYHK-ARGDHHR-NVCII-PVSAHGTNPAT---------AAMCG----MKIVSVGTDAKG 713 (985)
Q Consensus 650 ~~~~~~sGa~a~~a~l~air~~~~-~~g~~~~-~~IIv-~~~~Hg~~~~~---------a~~~G----~~vv~v~~d~~g 713 (985)
. +-+|+|++|.+++++.+|.|.. .++..+. .+|+. -.++||....+ .+.+| ..+..||.+
T Consensus 119 v-lpmnTGaEa~Eta~KLaR~wgy~~K~ip~nka~il~~~~nFhGrT~~ais~s~d~ds~~~fgp~~P~~~~~v~Y~--- 194 (427)
T KOG1402|consen 119 V-LPMNTGAEAVETACKLARKWGYRKKNIPKNKAKILSAENNFHGRTLGAISLSTDPDSWDGFGPFLPGVVDKVPYG--- 194 (427)
T ss_pred e-eecccchhHHHHHHHHHHHHHHhhccCCccceeEEEecccccCceeeeEEecCCcchhhccCCCCCCcceeeccC---
Confidence 3 5578999999999999997753 2332212 23443 56789854222 22222 235667775
Q ss_pred CCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccC---HHHHHHHHHHcCCEEEEEccccccccCCCCCCcc-------
Q 001989 714 NINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEG---IDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYI------- 782 (985)
Q Consensus 714 ~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~d---i~eI~~la~~~galliVD~a~~~~~~~l~~pg~~------- 782 (985)
|.++|+.+++. ++.++++++-- ..-|++.|| ++++.++|++|++++|.|++| .|+.+.|++
T Consensus 195 --d~eale~~l~~--~~vaaFivEPIQGEaGVvvP~~GYL~~vreLCtkynvl~I~DEvQ----TGl~RTGk~la~d~en 266 (427)
T KOG1402|consen 195 --DAEALEVALKS--PNVAAFIVEPIQGEAGVVVPPPGYLKKVRELCTKYNVLLIADEVQ----TGLARTGKLLACDYEN 266 (427)
T ss_pred --CHHHHHHHhcC--CCeeEEEeeccccccceEeCCchhHHHHHHHHHhhcEEEEehhhh----hcccccCcEEEeehhh
Confidence 89999999983 78888888643 467888643 899999999999999999876 455666654
Q ss_pred -CCcEEEeCCcccccccCCCCC--CceEEEEEccccc-CcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHH
Q 001989 783 -GADVCHLNLHKTFCIPHGGGG--PGMGPIGVKKHLA-PFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYT 858 (985)
Q Consensus 783 -g~Di~~~s~hK~l~~p~g~GG--Pg~G~i~~~~~l~-~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a 858 (985)
.+|++.++ |.|+ || |-.++++ +++++ .+-|+. ..+++.|+++.++.+.|
T Consensus 267 v~PDivilg--KalS-----GG~~Pvsavl~-~~~im~~~~pge-------------------HgsTyggNpLg~~vaiA 319 (427)
T KOG1402|consen 267 VRPDIVILG--KALS-----GGVYPVSAVLA-DDDIMLNIKPGE-------------------HGSTYGGNPLGCAVAIA 319 (427)
T ss_pred cCCCeEEEe--cccc-----CCeeeeEEEEe-cHHHHhccCCCc-------------------cccccCCChHHHHHHHH
Confidence 37998874 8774 44 4555555 54444 333432 12356678888888888
Q ss_pred HHHHhcHHHHHHHHHHHHHHHHHHHHHhhcc---C-Cee--ecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCC
Q 001989 859 YIAMMGSKGLTEASKIAILNANYMAKRLEKH---Y-PIL--FRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGF 932 (985)
Q Consensus 859 ~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~g---~-~l~--~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi 932 (985)
.|..+.++.+ .++...+...|+++|.+. + .++ ..+. ..++.+++... +..+.++.+++-+|.++|.
T Consensus 320 alevi~eekL---~era~~lG~~l~~~L~~l~~~~p~~v~~VRGr--Gl~~ai~i~~~---~~~~~~aw~~cl~lk~~g~ 391 (427)
T KOG1402|consen 320 ALEVIVEEKL---VERAAKLGEILRDQLNKLQKKFPHVVKEVRGR--GLLNAIVINPS---KTSGQDAWDVCLALKENGL 391 (427)
T ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHHhccccccchhheeecc--ceEEEEEeccc---cccchhHHHHHHccccccc
Confidence 9998877654 456677788888888752 2 111 1221 23333344322 1235678899999999999
Q ss_pred ccCCCCCCCCCEEEEeccCCCCHHHHHHHHccCChhHHHH
Q 001989 933 HGPTMSWPVPGTLMIEPTESESKSWTGIVMLSSPSEKKLH 972 (985)
Q Consensus 933 ~~~~~~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~ 972 (985)
.+.+.+ .+.+|++|+...+++|++. -++++++.+.
T Consensus 392 LAkptH---~~IiRfaPPL~I~e~dl~e--g~e~i~k~i~ 426 (427)
T KOG1402|consen 392 LAKPTH---GNIIRFAPPLVISEEDLRE--GIEAIEKTIA 426 (427)
T ss_pred ccCCCC---CCeEEecCCcccCHHHHHH--HHHHHHHHhc
Confidence 987655 4789999999999999999 7777776653
|
|
| >TIGR03372 putres_am_tran putrescine aminotransferase | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.2e-17 Score=190.70 Aligned_cols=319 Identities=18% Similarity=0.228 Sum_probs=202.8
Q ss_pred cccccccccCCCccccccccccccccccCCCCchhhhhhHHHHHHHHHHHHHHHhCCC-ccceecCcHHHHHHHHHHHHH
Q 001989 591 MIPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFD-SFSLQPNAGAAGEYAGLMVIR 669 (985)
Q Consensus 591 ~~~lG~~t~~~~~~~~~~~~~~~~f~~~~p~~p~e~~~G~~~~~~e~~~~la~l~G~~-~~~~~~~sGa~a~~a~l~air 669 (985)
...+|+|++.+..+...+......+.++.+ . +...++.+.|++++..+ ...++.+||++|++++++.+|
T Consensus 86 ~~~lGh~hp~v~~Av~~ql~~l~~~~~~~~-~---------~~~~~lAe~L~~~~p~~~~~v~f~~SGsEA~e~AlklAr 155 (442)
T TIGR03372 86 IFNVGHRNPNVIAAVENQLAKQPLHSQELL-D---------PLRALLAKTLAALTPGKLKYSFFCNSGTESVEAALKLAK 155 (442)
T ss_pred hhhcCCCCHHHHHHHHHHHHhCCCcccccC-C---------HHHHHHHHHHHHhCCCCcCEEEEeCCchHHHHHHHHHHH
Confidence 345788877777665555433222222221 1 12346788888887543 235678999999999999999
Q ss_pred HHHHhcCCCCCCEEEE-cCCCCcccHHHHHHCCc------------EEEEEcCCCCCCCCHHHHHHHHHh---cCCCEEE
Q 001989 670 AYHKARGDHHRNVCII-PVSAHGTNPATAAMCGM------------KIVSVGTDAKGNINIEELRKAAEA---NRDNLST 733 (985)
Q Consensus 670 ~~~~~~g~~~~~~IIv-~~~~Hg~~~~~a~~~G~------------~vv~v~~d~~g~iD~e~L~~~i~~---~~~~t~~ 733 (985)
.|...+ ++.+||. ...+||....+....+- .+..+|. .|.+++++.+++ +.+++++
T Consensus 156 ~~t~~~---gr~~ii~~~~~yHG~t~~~ls~t~~~~~~~~~~p~~~~~~~~p~-----~d~~~~~~~l~~~~~~~~~vAa 227 (442)
T TIGR03372 156 AYQSPR---GKFTFIAASGAFHGKSLGALSATAKPAFRKPFMPLLPGFHHVAF-----GDIEAMLKALNECKKTGDDVAA 227 (442)
T ss_pred HHHhhc---CCcEEEEECCCccCCCHHHhhccCCcccCCCCCCCCCCCEEeCC-----CCHHHHHHHHHHHhcCCCcEEE
Confidence 874222 3456665 66799987665433221 1344454 278888888753 3357888
Q ss_pred EEEEcC-CCccccccC----HHHHHHHHHHcCCEEEEEccccccccCCCCCCcc--------CCcEEEeCCcccccccCC
Q 001989 734 LMVTYP-STHGVYEEG----IDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYI--------GADVCHLNLHKTFCIPHG 800 (985)
Q Consensus 734 Vvv~~p-n~~G~i~~d----i~eI~~la~~~galliVD~a~~~~~~~l~~pg~~--------g~Di~~~s~hK~l~~p~g 800 (985)
|+++.. +.-|++. + +++|.++|+++|+++|+|++|. |+++.|.+ .+|++++ .|.+ +
T Consensus 228 vIvEpv~g~gG~~~-p~~~yl~~l~~lc~~~g~llI~DEV~t----G~GRtG~~~a~e~~gv~PDivt~--gK~l----g 296 (442)
T TIGR03372 228 IILEPIQGEGGVIL-PPEGYLPAVRALCDEFGALLILDEVQT----GMGRTGKMFACEHEGVQPDILCL--AKAL----G 296 (442)
T ss_pred EEEeCccCCCCccc-CCHHHHHHHHHHHHHcCCEEEEeeccc----CCCccccchhhhhcCCCCCeeee--hhhh----c
Confidence 888753 3567765 5 9999999999999999999873 34455543 2698875 3766 3
Q ss_pred CC-CCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHHHHHHHHHHHHHH
Q 001989 801 GG-GPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNA 879 (985)
Q Consensus 801 ~G-GPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a 879 (985)
+| -|..+ +++++++.+.+.... ....+++.|++..++++.+.|+.+..+++.+ +..+..
T Consensus 297 ~G~~Piga-vv~~~~i~~~~~~~~----------------~~~~~T~~gnp~~~Aaa~a~L~~i~~~~l~~---~~~~~G 356 (442)
T TIGR03372 297 GGVMPIGA-TIATEAVFSVLFDNP----------------FLHTTTFGGNPLACAAALATINELLEKNLPA---QAAIKG 356 (442)
T ss_pred CCcccceE-EEecHHHHHhhhccC----------------ccccCCCCCCHHHHHHHHHHHHHHHhccHHH---HHHHHH
Confidence 33 26444 556766655442110 0112345667888888889999887766543 556777
Q ss_pred HHHHHHhhcc---CC-ee--ecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCCCCCCCEEEEeccCCC
Q 001989 880 NYMAKRLEKH---YP-IL--FRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESE 953 (985)
Q Consensus 880 ~~l~~~L~~g---~~-l~--~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~~p~~~~lris~t~~~ 953 (985)
++|+++|++. ++ .+ +.+. + .+ +-+.+.. ......+.+.|.++|+++.....+ .+.+|++|+..+
T Consensus 357 ~~l~~~L~~l~~~~~~~i~~vRG~-G-l~--~giel~~-----~~~~~~i~~~l~~~Gvl~~~~~~~-~~~lr~~Ppl~~ 426 (442)
T TIGR03372 357 DFLLDGFQQLAAEYPDLIIEARGK-G-LL--MAIEFRD-----NEIGYAFAKELFQQNILVAGTLNN-AKSIRIEPPLTI 426 (442)
T ss_pred HHHHHHHHHHHHhCCCceEEEecc-e-EE--EEEEeCC-----hHHHHHHHHHHHHCCcEEeecCCC-CCEEEEECCccc
Confidence 8888888652 22 21 1121 1 12 2233320 123467899999999998643322 479999999999
Q ss_pred CHHHHHHHHccCChhHH
Q 001989 954 SKSWTGIVMLSSPSEKK 970 (985)
Q Consensus 954 t~eeId~~~~~~~l~~~ 970 (985)
|++|||+ ++++|++.
T Consensus 427 t~~~id~--~~~~l~~~ 441 (442)
T TIGR03372 427 TIEQCAL--VIKAAKDA 441 (442)
T ss_pred CHHHHHH--HHHHHHHh
Confidence 9999999 76777664
|
Members of this family are putrescine aminotransferase, as found in Escherichia coli, Erwinia carotovora subsp. atroseptica, and closely related species. This pyridoxal phosphate enzyme, as characterized in E. coli, can act also on cadaverine and, more weakly, spermidine. |
| >cd06450 DOPA_deC_like DOPA decarboxylase family | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.3e-17 Score=187.76 Aligned_cols=264 Identities=15% Similarity=0.125 Sum_probs=187.7
Q ss_pred HhhhHHHHHHHHHHHHHHhcCCC--CcceeeccchHHHHHHHHHHhhhh-----------cCCCCEEEEcCCCChhHHHH
Q 001989 205 IAQGRLESLLNFQTMIADLTGLP--MSNASLLDEGTAAAEAMAMCNNIQ-----------KGKKKTFIIASNCHPQTIDI 271 (985)
Q Consensus 205 ~sqg~l~~i~e~q~~ia~L~g~~--~~~~sl~~~~ta~~ea~~~a~~~~-----------~~~g~~Vlv~~~~H~s~~~~ 271 (985)
.+.+..+...++.+++++++|.+ .+++.++.|||.+...++.+.+.. .+.++.|+++...|+++...
T Consensus 32 ~~~~~~~le~~~~~~~~~~~g~~~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~h~~~~~~ 111 (345)
T cd06450 32 ESPAATEMEAEVVNWLAKLFGLPSEDADGVFTSGGSESNLLALLAARDRARKRLKAGGGRGIDKLVIVCSDQAHVSVEKA 111 (345)
T ss_pred cCchhHHHHHHHHHHHHHHhCCCCCCCCEEEeCChhHHHHHHHHHHHHHhhhhhhcccccccCCeEEEEcCcchhHHHHH
Confidence 35566777788889999999986 457888999997766555543211 01234789999999998888
Q ss_pred HHHhhcCCCeEEEEeCc--------hhhhc-cCC------CEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecC
Q 001989 272 CITRADGFDIKVVVSDL--------KDIDY-KSG------DVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDL 335 (985)
Q Consensus 272 ~~~~a~~~gi~v~~v~~--------~~l~~-l~~------~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~ 335 (985)
++. .|.+++.++. ++|++ +++ ++++|++++| |.+|.+.|+++|+++||++|+++++|+ .
T Consensus 112 ~~~----~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~~~~~~v~~~~~~~~tG~~~~~~~i~~~~~~~~~~l~vD~-a 186 (345)
T cd06450 112 AAY----LDVKVRLVPVDEDGRMDPEALEAAIDEDKAEGLNPIMVVATAGTTDTGAIDPLEEIADLAEKYDLWLHVDA-A 186 (345)
T ss_pred HHH----HhcCeEEeeeCCCCCcCHHHHHHHHHHHHHCCCCcEEEEEecccCCCCCCCCHHHHHHHHHHhCCeEEEec-h
Confidence 754 3666666643 45555 555 7888888887 679999999999999999999999953 3
Q ss_pred ccccCCC-CC------CcccceEEEecC-ccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccc
Q 001989 336 LALTILK-PP------GELGADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTR 407 (985)
Q Consensus 336 ~~lg~l~-~~------~~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tr 407 (985)
++.+.+. .. ...++|+++.++ |++++|+ ++|+++++
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~l~~p~-----g~g~~~~~------------------------------- 230 (345)
T cd06450 187 YGGFLLPFPEPRHLDFGIERVDSISVDPHKYGLVPL-----GCSAVLVR------------------------------- 230 (345)
T ss_pred hhHHHhhChhhHHHhcCccccCEEEEchhHhhCCCc-----chHHHHHH-------------------------------
Confidence 3433321 11 113799999898 6665553 34444322
Q ss_pred cccccccccCCCccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCCCcceEEEecC----
Q 001989 408 EQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDTVKVKCA---- 483 (985)
Q Consensus 408 e~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~~~~~~~~~~~---- 483 (985)
..+..++ +.+++.+|++++.++..++++++.+.|+++++++++.++..+.+.|..+
T Consensus 231 ------------------~~~~~~~--l~~l~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~iv~f~~~~~~~ 290 (345)
T cd06450 231 ------------------ALKLWAT--LRRFGRDGYGEHIDRIVDLAKYLAELIRADPGFELLGEPNLSLVCFRLKPSVK 290 (345)
T ss_pred ------------------HHHHHHH--HHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCceeEEEEEECCcch
Confidence 1111222 3677888999999999999999999999985588875544555556543
Q ss_pred -C--HHHHHHHHHHcCce-eeee---cCCeEEEEeccC-CCHHHHHHHHHHHhC
Q 001989 484 -D--AHAIASAAYKIEMN-LRVV---DSNTVTASFDET-TTLEDVDKLFIVFAG 529 (985)
Q Consensus 484 -~--~~~v~~~L~~~GI~-~~~~---~~~~lris~t~~-~t~edId~li~aL~~ 529 (985)
+ +.++.++|.++|+. +... .++.+|++++.+ +|++|+|+|+++|.+
T Consensus 291 ~~~~~~~i~~~L~~~g~~~~~~~~~~~~~~lRis~~~~~~t~~di~~l~~~l~~ 344 (345)
T cd06450 291 LDELNYDLSDRLNERGGWHVPATTLGGPNVLRFVVTNPLTTRDDADALLEDIER 344 (345)
T ss_pred hhHHHHHHHHHHHhcCCEEEEeeEECCeEEEEEEecCCCCCHHHHHHHHHHHHh
Confidence 2 57899999998654 4322 246899999986 599999999999864
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine. |
| >PRK05355 3-phosphoserine/phosphohydroxythreonine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=6.4e-18 Score=192.75 Aligned_cols=300 Identities=8% Similarity=-0.028 Sum_probs=190.0
Q ss_pred hHHHHHHHHHHHHHHHhCCCc---cceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcC-CCCccc-HHHHHHCCcE
Q 001989 629 GYQEMFNNLGEWLCTITGFDS---FSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPV-SAHGTN-PATAAMCGMK 703 (985)
Q Consensus 629 G~~~~~~e~~~~la~l~G~~~---~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~-~~Hg~~-~~~a~~~G~~ 703 (985)
-..++++++++.+++++|.+. +.+..+||+.|+++++..+. .+++++++.. ..+|.. ...++..|..
T Consensus 45 ~f~~~~~~~~~~l~~l~~~~~~~~v~~~~gsgt~~~Ea~~~nl~--------~~g~~~l~i~~G~fg~r~~~~a~~~g~~ 116 (360)
T PRK05355 45 EFEAVAEEAEADLRELLNIPDNYKVLFLQGGASLQFAMVPMNLL--------GGGKKADYVDTGSWSKKAIKEAKKYGEV 116 (360)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcEEEEEcCCchHHHHHHHHhcC--------CCCCeEEEEECCHHHHHHHHHHHHhCCc
Confidence 345778899999999999732 34566888888887765432 2445555432 222211 2235677865
Q ss_pred EEEEcCCC-CCCCCHHHHHH-HHHhcCCCEEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCC
Q 001989 704 IVSVGTDA-KGNINIEELRK-AAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPG 780 (985)
Q Consensus 704 vv~v~~d~-~g~iD~e~L~~-~i~~~~~~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg 780 (985)
+.+..++ .|..+..++++ +++ +++++|.+++- +.+|+..+||++| +|++++||++|+++...+ +..
T Consensus 117 -~~~~~~~~~g~~~~~~~~~~~l~---~~~~~V~~th~eTstGv~~~~i~~i------~g~l~vVDavss~g~~~i-dv~ 185 (360)
T PRK05355 117 -NVAASSEDDGFTYIPPLDEWQLS---DDAAYVHYTSNETIDGTEFHELPDT------GDVPLVADMSSDILSRPI-DVS 185 (360)
T ss_pred -eEEecccccCCCCCCChhhccCC---CCCCEEEEccCCCcceEecCccccc------CCCcEEEEcCccccCccC-CHH
Confidence 5666554 56666666665 676 57888888875 5799996457766 899999999997554433 334
Q ss_pred ccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCC---CCCCCCCCCCCCCCcchhhhHHHHHHH
Q 001989 781 YIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGI---PAPEKSQPLGTIAAAPWGSALILPISY 857 (985)
Q Consensus 781 ~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~---~~~~~~~~~~~i~s~~~g~~~~~~~a~ 857 (985)
++ |++++|+||+|+ .||+|++++++++.+.+.+.. +...+. .......+|+++. .+.+..
T Consensus 186 ~~--d~~~~ssqK~lg------P~Glg~l~~s~~~l~~~~~~~-~~~~~~~~~~~~~~~~~Tp~~~--------~i~aL~ 248 (360)
T PRK05355 186 KF--GLIYAGAQKNIG------PAGLTIVIVREDLLGRALPSI-PSMLDYKTHADNDSMYNTPPTF--------AIYLAG 248 (360)
T ss_pred Hc--cEEEEecccccc------CCceEEEEECHHHHhhcccCC-ChHHHHHHHHhcCCccCCCcHH--------HHHHHH
Confidence 44 699999999883 468999999988776654321 110010 0000001222221 122223
Q ss_pred HHHHHhcHH-HHHHHHHHHHHHHHHHHHHhhc-cC-CeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCcc
Q 001989 858 TYIAMMGSK-GLTEASKIAILNANYMAKRLEK-HY-PILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHG 934 (985)
Q Consensus 858 a~l~~lg~e-Gl~~~~~~~~~~a~~l~~~L~~-g~-~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~ 934 (985)
++|+.+..+ |+.++.++..+++++++++|++ ++ .. +..+.......+.+.++. +....++.+.+.++|+++
T Consensus 249 ~aL~~i~~~gG~e~i~~r~~~l~~~l~~~l~~~~~~~~-~~~~~~rs~~v~sf~~~~-----~~~~~~~~~~~~~~Gi~~ 322 (360)
T PRK05355 249 LVFKWLKEQGGVAAMEKRNQEKAALLYDAIDSSDFYRN-PVAPEDRSRMNVPFTLAD-----EELDKKFLAEAKAAGLVG 322 (360)
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhCCCccc-CCChhhcCCcEEEEEcCC-----hHHHHHHHHHHHHCCCcc
Confidence 456666667 7888999999999999999987 32 22 111111111123444431 223356767888899997
Q ss_pred CCCCCCCCCEEEEeccCCCCHHHHHHHHccCChhHHHHh
Q 001989 935 PTMSWPVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHR 973 (985)
Q Consensus 935 ~~~~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~ 973 (985)
..... ..+.+|+|+..++|+||||+ +++.|++++.+
T Consensus 323 ~~~~~-~~g~vRiS~~~~nt~eei~~--l~~~l~~~~~~ 358 (360)
T PRK05355 323 LKGHR-SVGGMRASIYNAMPLEGVQA--LVDFMKEFERR 358 (360)
T ss_pred cCCCC-ccCcEEEECCCCCCHHHHHH--HHHHHHHHHHh
Confidence 33221 24899999999999999999 88888887653
|
|
| >PLN02721 threonine aldolase | Back alignment and domain information |
|---|
Probab=99.78 E-value=2e-17 Score=188.74 Aligned_cols=292 Identities=15% Similarity=0.123 Sum_probs=185.8
Q ss_pred HHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHH---HHHHCCcEEEEEcCC
Q 001989 634 FNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPA---TAAMCGMKIVSVGTD 710 (985)
Q Consensus 634 ~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~---~a~~~G~~vv~v~~d 710 (985)
..++++.+++++|.+.. ++.++|+++++.++.++. + .++|+|++++..|..... .+...|++++.+|.+
T Consensus 42 ~~~l~~~la~~~~~~~~-~~~~~Gs~a~~~~l~~~~------~-~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~ 113 (353)
T PLN02721 42 ALRLEEEMAKIFGKEAA-LFVPSGTMGNLISVLVHC------D-VRGSEVILGDNSHIHLYENGGISTLGGVHPRTVKNN 113 (353)
T ss_pred HHHHHHHHHHHhCCcee-EEecCccHHHHHHHHHHc------c-CCCCeEEEcCccceehhcccchhhhcCceeEecCCC
Confidence 45788999999998764 455667766644444321 1 267899999887744333 456789999999988
Q ss_pred CCCCCCHHHHHHHHHhcC----CCEEEEEEEcC-C-Cccccc--cCHHHHHHHHHHcCCEEEEEccccccc---cCCCCC
Q 001989 711 AKGNINIEELRKAAEANR----DNLSTLMVTYP-S-THGVYE--EGIDEICKIIHDNGGQVYMDGANMNAQ---VGLTSP 779 (985)
Q Consensus 711 ~~g~iD~e~L~~~i~~~~----~~t~~Vvv~~p-n-~~G~i~--~di~eI~~la~~~galliVD~a~~~~~---~~l~~p 779 (985)
+++.+|+++++++|++.. +++++|+++++ | ++|.+. .++++|.++|+++|+++++|+++.... .+. .+
T Consensus 114 ~~~~~d~~~l~~~i~~~~~~~~~~~~~v~l~~~~~np~G~~~~~~~l~~l~~l~~~~g~~livD~a~~~~~~~~~~~-~~ 192 (353)
T PLN02721 114 EDGTMDLDAIEAAIRPKGDDHFPTTRLICLENTHANCGGRCLSVEYTDKVGELAKRHGLKLHIDGARIFNASVALGV-PV 192 (353)
T ss_pred cCCCcCHHHHHHHHHhccCCCCCcceEEEEeccccccCCccccHHHHHHHHHHHHHcCCEEEEEchhhhcchhhhCC-CH
Confidence 889999999999997321 47889999874 4 577764 138899999999999999999874321 111 22
Q ss_pred C--ccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHH
Q 001989 780 G--YIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISY 857 (985)
Q Consensus 780 g--~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~ 857 (985)
. ..++|.++.++||+|+ +|.+++++.++++...+.... . ...+... +.+. .+++++
T Consensus 193 ~~~~~~~d~~~~s~sK~l~------~~~G~~~~~~~~~~~~~~~~~-~-----------~~~~~~~--~~~~--~~~~~~ 250 (353)
T PLN02721 193 HRLVKAADSVSVCLSKGLG------APVGSVIVGSKSFIRKAKRLR-K-----------TLGGGMR--QVGV--LAAAAL 250 (353)
T ss_pred HHHhhhCCEEEEecccccC------CceeeEEecCHHHHHhHHHHH-H-----------hcCCCee--hhHH--HHHHHH
Confidence 2 2368999999999984 454445666666554322100 0 0000110 1111 111122
Q ss_pred HHHHHhcHHHHHHHHHHHHHHHHHHHHHhhcc--CCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccC
Q 001989 858 TYIAMMGSKGLTEASKIAILNANYMAKRLEKH--YPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGP 935 (985)
Q Consensus 858 a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~g--~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~ 935 (985)
..+.. ..+..++..++++++.+.|++. +.+....+ ..+.+.++++. ..+.+..+++++|.++||.+.
T Consensus 251 ~~l~~-----~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~---~~~~~~~~~~~---~~~~~~~~~~~~L~~~gi~v~ 319 (353)
T PLN02721 251 VALQE-----NVPKLEDDHKKAKLLAEGLNQIKGLRVNVAAV---ETNIVYFDITD---GSRITAEKLCKSLEEHGVLLM 319 (353)
T ss_pred HHHHH-----HHHHHHHHHHHHHHHHHHHHhCCCcEEecCCc---cceEEEEEccC---CccccHHHHHHHHHhCCcEEe
Confidence 22221 1222334456778899999763 32212222 12224455431 011467889999999999986
Q ss_pred CCCCCCCCEEEEeccCCCCHHHHHHHHccCChhHHHH
Q 001989 936 TMSWPVPGTLMIEPTESESKSWTGIVMLSSPSEKKLH 972 (985)
Q Consensus 936 ~~~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~ 972 (985)
... .+++|++++..++++|+++ +++.|++++.
T Consensus 320 ~~~---~~~lR~~~~~~~~~~~i~~--~~~~l~~~~~ 351 (353)
T PLN02721 320 PGN---SSRIRVVTHHQISDSDVQY--TLSCFQQAAL 351 (353)
T ss_pred cCC---CceEEEEecCcCCHHHHHH--HHHHHHHHhh
Confidence 432 4789999998999999999 7788887664
|
|
| >cd06502 TA_like Low-specificity threonine aldolase (TA) | Back alignment and domain information |
|---|
Probab=99.77 E-value=5.7e-18 Score=192.05 Aligned_cols=286 Identities=16% Similarity=0.122 Sum_probs=179.4
Q ss_pred HHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHH---HHHHCCcEEEEEcCC
Q 001989 634 FNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPA---TAAMCGMKIVSVGTD 710 (985)
Q Consensus 634 ~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~---~a~~~G~~vv~v~~d 710 (985)
..++++.+++++| +...++.++|++++..++. .+. .++++|+++++.|..+.. .+...|++++.++.+
T Consensus 34 ~~~l~~~~a~~~g-~~~~~~~~~gt~a~~~~~~---~l~-----~~gd~v~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~ 104 (338)
T cd06502 34 TAKLEARAAELFG-KEAALFVPSGTAANQLALA---AHT-----QPGGSVICHETAHIYTDEAGAPEFLSGVKLLPVPGE 104 (338)
T ss_pred HHHHHHHHHHHhC-CCeEEEecCchHHHHHHHH---Hhc-----CCCCeEEEecCcceeeecCCcHHHHcCceEEeecCC
Confidence 5678899999999 5445666677776643333 321 467899999988876432 345689999999985
Q ss_pred CCCCCCHHHHHHHHHhc----CCCEEEEEEEcCCCcccc-c-cCHHHHHHHHHHcCCEEEEEccccccc---cCCC-CCC
Q 001989 711 AKGNINIEELRKAAEAN----RDNLSTLMVTYPSTHGVY-E-EGIDEICKIIHDNGGQVYMDGANMNAQ---VGLT-SPG 780 (985)
Q Consensus 711 ~~g~iD~e~L~~~i~~~----~~~t~~Vvv~~pn~~G~i-~-~di~eI~~la~~~galliVD~a~~~~~---~~l~-~pg 780 (985)
. +.+|+++|++++++. .+++++|++++||..|.+ . .++++|+++|+++|+++++|+++.... .+.. ...
T Consensus 105 ~-~~~d~~~l~~~i~~~~~~~~~~~~~v~l~~p~n~g~~~~~~~l~~i~~~~~~~~~~livDea~~~~~~~~~~~~~~~~ 183 (338)
T cd06502 105 N-GKLTPEDLEAAIRPRDDIHFPPPSLVSLENTTEGGTVYPLDELKAISALAKENGLPLHLDGARLANAAAALGVALKTY 183 (338)
T ss_pred C-CcCCHHHHHHHhhccCCCcCCcceEEEEEeecCCccccCHHHHHHHHHHHHHcCCeEeechHHHHHHHHhcCCCHHHH
Confidence 4 789999999999732 137899999999755643 1 268899999999999999999873211 1110 111
Q ss_pred ccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHH
Q 001989 781 YIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYI 860 (985)
Q Consensus 781 ~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l 860 (985)
..++|+++.++||+|+. |++++++.++++.+.+...... .+ ++... +...+ ++.+
T Consensus 184 ~~~~d~~~~s~sK~~~~------~~g~~~~~~~~~~~~~~~~~~~-----------~~-~~~~~----~~~~~---~a~~ 238 (338)
T cd06502 184 KSGVDSVSFCLSKGGGA------PVGAVVVGNRDFIARARRRRKQ-----------AG-GGMRQ----SGFLA---AAGL 238 (338)
T ss_pred HhcCCEEEEeccccCCC------ccceEEECCHHHHHHHHHHHHH-----------hC-CChhh----HHHHH---HHHH
Confidence 24789999999999954 4445666676665444211000 00 01000 11111 2223
Q ss_pred HHhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHH---HCCCccCC
Q 001989 861 AMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLM---DYGFHGPT 936 (985)
Q Consensus 861 ~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~---~~Gi~~~~ 936 (985)
..+...++.+..++..++++++.+.|++ ++.+ ++ +..+.+.+.++. ......++.+.|. ++|+.+..
T Consensus 239 ~~L~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~-~~----~~~~~~~v~~~~----~~~~~~~l~~~l~~~~~~gi~~~~ 309 (338)
T cd06502 239 AALENDLWLRRLRHDHEMARRLAEALEELGGLE-SE----VQTNIVLLDPVE----ANAVFVELSKEAIERRGEGVLFYA 309 (338)
T ss_pred HHhcCchHHHHHHHHHHHHHHHHHHHHhcCCCc-cc----ccCCeEEEecCC----ccHHHHHHHHHHHHhhhCCEEEEe
Confidence 3343445666667788889999999986 4432 21 122223444321 0111234444443 57887754
Q ss_pred CCCCCCCEEEEeccCCCCHHHHHHHHccCChh
Q 001989 937 MSWPVPGTLMIEPTESESKSWTGIVMLSSPSE 968 (985)
Q Consensus 937 ~~~p~~~~lris~t~~~t~eeId~~~~~~~l~ 968 (985)
.. .+.+||+++..+|.+|+++ +++.++
T Consensus 310 ~~---~~~lRi~~~~~~~~~~i~~--~~~~l~ 336 (338)
T cd06502 310 WG---EGGVRFVTHWDTTEEDVDE--LLSALK 336 (338)
T ss_pred cC---CCeEEEEeecCCCHHHHHH--HHHHHh
Confidence 32 2789999999999999999 655554
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway. |
| >PRK05964 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.9e-17 Score=191.89 Aligned_cols=337 Identities=13% Similarity=0.115 Sum_probs=205.5
Q ss_pred cccccccccCCCccccccccccccccc-cCCCCchhhhhhHHHHHHHHHHHHHHHhCCC-ccceecCcHHHHHHHHHHHH
Q 001989 591 MIPLGSCTMKLNATTEMMPVTWPSFAN-IHPFAPADQAQGYQEMFNNLGEWLCTITGFD-SFSLQPNAGAAGEYAGLMVI 668 (985)
Q Consensus 591 ~~~lG~~t~~~~~~~~~~~~~~~~f~~-~~p~~p~e~~~G~~~~~~e~~~~la~l~G~~-~~~~~~~sGa~a~~a~l~ai 668 (985)
...||++++.+..+...+......... .++ . +...++.+.|++++... ...++.+||++|++++++.+
T Consensus 53 ~~~lGh~~p~v~~ai~~q~~~~~~~~~~~~~-~---------~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~A~kla 122 (423)
T PRK05964 53 VATHGHNHPYIDQAIREQLDRLDHVIFAGFT-H---------EPAERLAQRLVALTPGGLDHVFFSDSGSVAVEVALKMA 122 (423)
T ss_pred hccCCCCCHHHHHHHHHHHhhCCCccccccC-C---------HHHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHHH
Confidence 346888877776655444322111111 111 1 22346778888887421 23467799999999999999
Q ss_pred HHHHHhcCCCCCCEEEE-cCCCCcccHHHHHHCC------------cEEEEEcCCCC--CCCCHHHHHHHHHhcCCCEEE
Q 001989 669 RAYHKARGDHHRNVCII-PVSAHGTNPATAAMCG------------MKIVSVGTDAK--GNINIEELRKAAEANRDNLST 733 (985)
Q Consensus 669 r~~~~~~g~~~~~~IIv-~~~~Hg~~~~~a~~~G------------~~vv~v~~d~~--g~iD~e~L~~~i~~~~~~t~~ 733 (985)
|.|...+|..++.+||. ...+||.........+ ..+..++...+ ...+++++++.++++.+++++
T Consensus 123 r~~~~~~~~~~r~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~~l~~~~~~iaa 202 (423)
T PRK05964 123 LQYWRNRGEPGRSRFLSLRGGYHGDTIGTMSVGDRGGMHALYTPLLFEQVTAPFPPDGYEQATLDALEALLEKHAGEIAA 202 (423)
T ss_pred HHHHHhcCCCCCcEEEEEcCCcCCccHHHHhcCCCccccccccCcCCCCEEeCCCcchhHHHHHHHHHHHHHhCCCcEEE
Confidence 98865555334567775 6688997655432211 12333444211 112288899999765567888
Q ss_pred EEEEc-C-CCccccc---cCHHHHHHHHHHcCCEEEEEccccccccCCCCCCc--------cCCcEEEeCCcccccccCC
Q 001989 734 LMVTY-P-STHGVYE---EGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGY--------IGADVCHLNLHKTFCIPHG 800 (985)
Q Consensus 734 Vvv~~-p-n~~G~i~---~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~--------~g~Di~~~s~hK~l~~p~g 800 (985)
|+++. . ...|+.. ..+++|.++|+++|+++++|++|. ++ .++|. ..+|+++++ |+|+
T Consensus 203 vi~Ep~i~~~gG~~~~~~~~l~~l~~lc~~~g~llI~DEv~t-g~---gr~G~~~a~~~~~v~pDi~~~~--K~l~---- 272 (423)
T PRK05964 203 FIVEPLVQGAGGMLFYDPRYLAELRRICDRHGVLLIFDEIAT-GF---GRTGTLFACEQAGVSPDIMCLS--KGLT---- 272 (423)
T ss_pred EEEecccccCCCcccCCHHHHHHHHHHHHHcCCEEEEechhh-CC---CcCcchhHHHhcCCCCCeeeee--hhhh----
Confidence 88864 2 2345543 148999999999999999999873 23 23322 237887664 8884
Q ss_pred CCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHH
Q 001989 801 GGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNAN 880 (985)
Q Consensus 801 ~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~ 880 (985)
+|+-.+|.+++++++.+.+.... .. . . ....+++.|+++.++++.+.+..+..+++ .++..++.+
T Consensus 273 gG~~p~~av~~~~~i~~~~~~~~-~~--------~--~-~~~~~T~~~np~~~aaa~a~l~~l~~~~~---~~~~~~~g~ 337 (423)
T PRK05964 273 GGYLPLAATLCTAEIFEAFYSDD-RA--------K--A-FMHSPSYTANPLACAAANASLDLFEDEPV---LERVAALSA 337 (423)
T ss_pred cCcccceEEEEcHHHHHhhhcCC-cc--------c--c-cccCCCCCcCHHHHHHHHHHHHHHHhcCH---HHHHHHHHH
Confidence 33234667888887766553110 00 0 0 00112344566777777788887765544 456777788
Q ss_pred HHHHHhhcc--CCee--ecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCCCCCCCEEEEeccCCCCHH
Q 001989 881 YMAKRLEKH--YPIL--FRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKS 956 (985)
Q Consensus 881 ~l~~~L~~g--~~l~--~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~~p~~~~lris~t~~~t~e 956 (985)
++++.|++. +..+ ..+. + .+ +.+.+.. ...+.....+.+.|.++|+++... .+.+|++|+..+|++
T Consensus 338 ~l~~~l~~l~~~~~i~~vrg~-G-l~--~~i~l~~--~~~~~~~~~l~~~l~~~Gv~v~~~----~~~lR~~p~l~~t~e 407 (423)
T PRK05964 338 GLAEGLEPFRDLPGVADVRVL-G-AI--GAVELDR--PVLERDGPALRAFALERGVLLRPL----GNTIYLMPPYIITAE 407 (423)
T ss_pred HHHHHHHhhccCCCeEEeecc-c-EE--EEEEecc--CcchhHHHHHHHHHHHCCeEEEec----CCEEEEeCCcccCHH
Confidence 888888752 2221 1111 1 11 2233321 000012567889999999998543 368999999999999
Q ss_pred HHHHHHccCChhHHHHhh
Q 001989 957 WTGIVMLSSPSEKKLHRL 974 (985)
Q Consensus 957 eId~~~~~~~l~~~~~~~ 974 (985)
|||+ ++++++++++++
T Consensus 408 dId~--~v~~l~~al~~~ 423 (423)
T PRK05964 408 ELDR--ITDAIVEVADEL 423 (423)
T ss_pred HHHH--HHHHHHHHHhhC
Confidence 9999 789998888653
|
|
| >COG0156 BioF 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.9e-17 Score=186.64 Aligned_cols=292 Identities=15% Similarity=0.173 Sum_probs=197.9
Q ss_pred hhhhHHHHHHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEE
Q 001989 626 QAQGYQEMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIV 705 (985)
Q Consensus 626 ~~~G~~~~~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv 705 (985)
...|....+.++|+.||+++|.+.+ +.++||-.|+.+.+.++. .++|.|+.....|.+....++..+.+++
T Consensus 78 ~i~G~~~~h~~LE~~lA~f~g~e~a-l~f~SGy~AN~~~i~~l~--------~~~dli~~D~lnHASiidG~rls~a~~~ 148 (388)
T COG0156 78 LISGTSDLHVELEEELADFLGAEAA-LLFSSGFVANLGLLSALL--------KKGDLIFSDELNHASIIDGIRLSRAEVR 148 (388)
T ss_pred cccCCcHHHHHHHHHHHHHhCCCcE-EEEcccchhHHHHHHHhc--------CCCcEEEEechhhhhHHHHHHhCCCcEE
Confidence 4567888899999999999999875 455778888866666553 3567666677778777777889999999
Q ss_pred EEcCCCCCCCCHHHHHHHHHhcCC---CEEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCC---CC
Q 001989 706 SVGTDAKGNINIEELRKAAEANRD---NLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGL---TS 778 (985)
Q Consensus 706 ~v~~d~~g~iD~e~L~~~i~~~~~---~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l---~~ 778 (985)
.++++ |+++|++.+.+.+. +.+.|++... +..|.+- |+++|++++++||++++||.||+.+..|- +.
T Consensus 149 ~f~Hn-----D~~~Le~~l~~~~~~~~~~~~IvtegVfSMdGdiA-pL~~l~~L~~ky~a~L~VDEAHa~Gv~G~~GrG~ 222 (388)
T COG0156 149 RFKHN-----DLDHLEALLEEARENGARRKLIVTEGVFSMDGDIA-PLPELVELAEKYGALLYVDEAHAVGVLGPNGRGL 222 (388)
T ss_pred EecCC-----CHHHHHHHHHhhhccCCCceEEEEeccccCCCCcC-CHHHHHHHHHHhCcEEEEEccccccccCCCCccH
Confidence 99984 99999999985211 2344555443 5689987 89999999999999999999997554331 00
Q ss_pred CCcc-----CCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHH
Q 001989 779 PGYI-----GADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALIL 853 (985)
Q Consensus 779 pg~~-----g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~ 853 (985)
.... .+||+++++.|.|+. .+|++.++..+.+++..+. +...+++ +. .+..+
T Consensus 223 ~e~~g~~~~~vdi~~gTlsKAlGs-------~Gg~v~g~~~~~d~L~~~a-----------r~~ifSt-al----pP~~a 279 (388)
T COG0156 223 AEHFGLEPEEVDIIVGTLGKALGS-------SGGYIAGSAALIDYLRNRA-----------RPFIFST-AL----PPAVA 279 (388)
T ss_pred HHHhCCCCccceEEEEEchhhhcc-------cCceeeCcHHHHHHHHHhC-----------CceeccC-CC----CHHHH
Confidence 1112 248999999998852 3478888877666543210 0000111 00 12333
Q ss_pred HHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCC
Q 001989 854 PISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGF 932 (985)
Q Consensus 854 ~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi 932 (985)
+++.+.++.+... .+..++..+++.++++.++. ++.+. +...+.. .+++.. ......+...|.++||
T Consensus 280 aa~~~al~~l~~~--~~~r~~L~~~~~~~~~~~~~~~~~~~--~s~s~I~-pv~~gd-------~~~a~~~s~~l~~~Gi 347 (388)
T COG0156 280 AAALAALRILEEG--PERRERLQELAAFFRSLLKALGLVLL--PSESPII-PVILGD-------EERALEASRALLEEGI 347 (388)
T ss_pred HHHHHHHHHHHhC--HHHHHHHHHHHHHHHHHHHhcCCccC--CCCCCee-eeEeCC-------HHHHHHHHHHHHHCCe
Confidence 4455666666432 44556778888888866655 44431 1111222 233321 1246788999999999
Q ss_pred ccCCCCCC-CC---CEEEEeccCCCCHHHHHHHHccCChhH
Q 001989 933 HGPTMSWP-VP---GTLMIEPTESESKSWTGIVMLSSPSEK 969 (985)
Q Consensus 933 ~~~~~~~p-~~---~~lris~t~~~t~eeId~~~~~~~l~~ 969 (985)
++..+.+| ++ ..||+++|..+|++||++ +++.|.+
T Consensus 348 ~v~~i~~PTVp~gtarlRi~lta~ht~~~I~~--l~~~l~~ 386 (388)
T COG0156 348 YVSAIRPPTVPKGTARLRITLTAAHTEEDIDR--LAEALSE 386 (388)
T ss_pred eEeeecCCCCCCCcceEEEEecCCCCHHHHHH--HHHHHHh
Confidence 99887777 33 689999999999999999 5555554
|
|
| >KOG2862 consensus Alanine-glyoxylate aminotransferase AGT1 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.3e-16 Score=166.93 Aligned_cols=324 Identities=16% Similarity=0.168 Sum_probs=219.4
Q ss_pred ecCCCCCCCCCcHHHHHHHHhCCccccccCCChhhHhhhHHHHHHHHHHHHHHhcCCC-CcceeeccchHHHHHHHHHHh
Q 001989 170 FIGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLP-MSNASLLDEGTAAAEAMAMCN 248 (985)
Q Consensus 170 ~lG~g~y~~~~p~~v~~~i~~~~~~~t~~~pyq~e~sqg~l~~i~e~q~~ia~L~g~~-~~~~sl~~~~ta~~ea~~~a~ 248 (985)
.+|.| |.-+|..|.++ .+++-. +-..||.. |.+.+..+-+--.|... ...+.+-.+|+.++|+++..+
T Consensus 20 L~gPG--Psnl~~~V~~A-~~~~~l----gh~sPe~~----qIm~~v~egikyVFkT~n~~tf~isgsGh~g~E~al~N~ 88 (385)
T KOG2862|consen 20 LLGPG--PSNLSGRVQEA-MSRPSL----GHMSPEFV----QIMDEVLEGIKYVFKTANAQTFVISGSGHSGWEAALVNL 88 (385)
T ss_pred eecCC--CcCCCHHHHHh-hcCCcc----ccCCHHHH----HHHHHHHHHHHHHhccCCCceEEEecCCcchHHHHHHhh
Confidence 66888 56689999844 555532 23356653 33444444444444332 223556678889999987654
Q ss_pred hhhcCCCCEEEEcC-CCChhHHHHHHHhhcCCCeEEEEeCc--------hhhhc-cC-CCEeEEEEEcC-CCCeeecc-H
Q 001989 249 NIQKGKKKTFIIAS-NCHPQTIDICITRADGFDIKVVVSDL--------KDIDY-KS-GDVCGVLVQYP-GTEGEVLD-Y 315 (985)
Q Consensus 249 ~~~~~~g~~Vlv~~-~~H~s~~~~~~~~a~~~gi~v~~v~~--------~~l~~-l~-~~t~~V~v~~p-n~~G~v~d-i 315 (985)
+. +||+|++-. +.+.....-+ ++++|++|..++. +++.+ +. -..++|+|++. +.+|+++| +
T Consensus 89 -le--Pgd~vLv~~~G~wg~ra~D~---~~r~ga~V~~v~~~~G~~~~le~i~~~lsqh~p~~vfv~hgdsSTgV~q~~~ 162 (385)
T KOG2862|consen 89 -LE--PGDNVLVVSTGTWGQRAADC---ARRYGAEVDVVEADIGQAVPLEEITEKLSQHKPKAVFVTHGDSSTGVLQDLL 162 (385)
T ss_pred -cC--CCCeEEEEEechHHHHHHHH---HHhhCceeeEEecCcccCccHHHHHHHHHhcCCceEEEEecCccccccchHH
Confidence 23 899987544 5654333222 3467888887743 45554 43 45678888876 78999999 7
Q ss_pred HHHHHHHHhCCcEEEEEecCccccCCC-CCCcccceEEEecC-ccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeec
Q 001989 316 GDFIKNAHANGVKVVMATDLLALTILK-PPGELGADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSID 393 (985)
Q Consensus 316 ~~I~~~a~~~galliV~a~~~~lg~l~-~~~~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d 393 (985)
+.+.++||+++++++|++ ..|+|... ..++||+|++-..+ |.|+.| ||++++..+++.+.++-.|--
T Consensus 163 ~~~g~lc~k~~~lllVD~-VaSlggt~F~mDewgVDvaytgSQKaL~aP-----~GLsiisfS~ka~~~~~~rK~----- 231 (385)
T KOG2862|consen 163 AISGELCHKHEALLLVDT-VASLGGTEFEMDEWGVDVAYTGSQKALGAP-----AGLSIISFSDKALEAIRDRKT----- 231 (385)
T ss_pred HHHHHHhhcCCeEEEEec-hhhcCCccceehhhcccEEEecchhhcCCC-----CCcceeecCHHHHHHHhhccC-----
Confidence 888999999999999954 45777653 45899999988777 888777 578899999988887743321
Q ss_pred CCCCcceeeecccccccc------cccccCCCccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCe
Q 001989 394 SSGKPALRVAMQTREQHI------RRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTV 467 (985)
Q Consensus 394 ~~g~~~~~l~l~tre~~i------rre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~ 467 (985)
+...|+++...+-+.+ |+...|..+ +.++++.+|+ +.+-++|++++.+|+.+++++++..|+++| +
T Consensus 232 --~~~~~yFd~~~~~~~wgc~~e~~~yhhT~pv---~lly~Lr~AL--~~I~eeGL~~~~~rH~e~s~~l~~~l~~~G-L 303 (385)
T KOG2862|consen 232 --KPVSFYFDILRLGNFWGCDGEPRAYHHTPPV---QLLYSLRAAL--ALIAEEGLENSWRRHREMSKWLKLSLEALG-L 303 (385)
T ss_pred --CceEEEEeHHhhcchhccCCcccccccCCcH---HHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-c
Confidence 1123555532222222 344455555 8899999997 788899999999999999999999999998 8
Q ss_pred EEcC--C-CCcceEE-EecCC---HHHHHHHHHHc-Cceee----eecCCeEEEEeccC-CCHHHHHHHHHHHhC
Q 001989 468 EVQG--L-PFFDTVK-VKCAD---AHAIASAAYKI-EMNLR----VVDSNTVTASFDET-TTLEDVDKLFIVFAG 529 (985)
Q Consensus 468 ~~~~--~-~~~~~~~-~~~~~---~~~v~~~L~~~-GI~~~----~~~~~~lris~t~~-~t~edId~li~aL~~ 529 (985)
++.. + ...++++ +..+- ..+|+..+.++ ++.+. ...+..+||.+.-. -+.|-||..++.|+.
T Consensus 304 q~fv~~e~~rlptvttv~vp~gvDw~dVv~~~~~~~~vei~gglg~~~gKv~RIGl~gcna~~e~i~~v~~ll~~ 378 (385)
T KOG2862|consen 304 QLFVVDEELRLPTVTTVKVPYGVDWKDVVAYAMSHYVVEIGGGLGPTVGKVFRIGLLGCNANVEYIDNVVELLKL 378 (385)
T ss_pred cceecChhhccCcceeeecCCCCCHHHHHHHHHHhcCEEeccccCCCcccEEEEEEeeccCCcHHHHHHHHHHHH
Confidence 8762 1 3333332 33332 77888888776 66553 33456789988664 477888888888764
|
|
| >TIGR01141 hisC histidinol-phosphate aminotransferase | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.1e-17 Score=190.58 Aligned_cols=279 Identities=14% Similarity=0.150 Sum_probs=184.3
Q ss_pred HHHHHHHHHHhCCCccceecCcHH-HHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcCCCCC
Q 001989 635 NNLGEWLCTITGFDSFSLQPNAGA-AGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKG 713 (985)
Q Consensus 635 ~e~~~~la~l~G~~~~~~~~~sGa-~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~d~~g 713 (985)
.++++.+++++|++...+..++|+ ++...++. .+. .++++|+++++.|+.+...++..|++++.+|+++++
T Consensus 57 ~~lr~~ia~~~~~~~~~i~~~~G~~~~l~~~~~---~l~-----~~gd~v~~~~p~y~~~~~~~~~~g~~~~~~~~~~~~ 128 (346)
T TIGR01141 57 AELKQALADYYGVDPEQILLGNGSDEIIELLIR---AFL-----EPGDAVLVPPPTYSMYEISAKIHGAEVVKVPLDEDG 128 (346)
T ss_pred HHHHHHHHHHhCcChHHEEEcCCHHHHHHHHHH---Hhc-----CCCCEEEEcCCCHHHHHHHHHHcCCeEEEeccCCCC
Confidence 478899999999876555554454 44433332 221 367899999887665555677899999999998888
Q ss_pred CCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccCHHHHHHHHHHc--CCEEEEEccccccccCCCCC----CccCCcE
Q 001989 714 NINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDN--GGQVYMDGANMNAQVGLTSP----GYIGADV 786 (985)
Q Consensus 714 ~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~--galliVD~a~~~~~~~l~~p----g~~g~Di 786 (985)
.+|+++++++++ +++++|++++| |++|.+. +++++.++|+.+ |+++++|+++. .+..-..+ .....++
T Consensus 129 ~~d~~~l~~~~~---~~~~~v~l~~p~NptG~~~-~~~~~~~l~~~~~~~~~ii~D~~y~-~~~~~~~~~~~~~~~~~~i 203 (346)
T TIGR01141 129 QLDLEDILVAID---DKPKLVFLCSPNNPTGNLL-SRSDIEAVLERTPEDALVVVDEAYG-EFSGEPSTLPLLAEYPNLI 203 (346)
T ss_pred CCCHHHHHHhcC---CCCCEEEEeCCCCCCCCCC-CHHHHHHHHHhCCCCcEEEEECchh-hhcCCccHHHHHhhCCCEE
Confidence 999999999876 78999999998 4799998 899999999887 99999999874 11111011 1122346
Q ss_pred EEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHH
Q 001989 787 CHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSK 866 (985)
Q Consensus 787 ~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~e 866 (985)
++.|++|+|+. +|+++|++++++++.+.+.... ...+.+ .....++.+++... +
T Consensus 204 ~~~S~sK~~g~----~G~r~G~~~~~~~~~~~~~~~~--------------~~~~~~------~~~~~~~~~~l~~~--~ 257 (346)
T TIGR01141 204 VLRTLSKAFGL----AGLRIGYAIANAEIIDALNKVR--------------APFNLS------RLAQAAAIAALRDD--D 257 (346)
T ss_pred EEehhhHhhhc----hhhhceeeecCHHHHHHHHhcc--------------CCCCCC------HHHHHHHHHHhCCH--H
Confidence 77888999854 3678999999877665543210 001111 11122222333322 2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCC-C-CCCCE
Q 001989 867 GLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMS-W-PVPGT 944 (985)
Q Consensus 867 Gl~~~~~~~~~~a~~l~~~L~~g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~-~-p~~~~ 944 (985)
.+.+..++..++++++++.|++..++...++.+ .+ +.+.++ + +.+++.++|.++||.+.... + ..++.
T Consensus 258 ~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~g-~~--~~~~~~------~-~~~~~~~~L~~~gI~v~~g~~f~~~~~~ 327 (346)
T TIGR01141 258 FIEKTVEEINAERERLYDGLKKLPGLEVYPSDA-NF--VLIRFP------R-DADALFEALLEKGIIVRDLNSYPGLPNC 327 (346)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCEECCCcC-CE--EEEecC------C-CHHHHHHHHHHCCeEEEeCCCcCCCCCe
Confidence 355666677788888999987621222222212 22 345553 2 67899999999999875432 2 12589
Q ss_pred EEEeccCCCCHHHHHHHHccCCh
Q 001989 945 LMIEPTESESKSWTGIVMLSSPS 967 (985)
Q Consensus 945 lris~t~~~t~eeId~~~~~~~l 967 (985)
+|++++ +++|+++ +++.|
T Consensus 328 iRls~~---~~~~i~~--~~~~l 345 (346)
T TIGR01141 328 LRITVG---TREENDR--FLAAL 345 (346)
T ss_pred EEEecC---CHHHHHH--HHHHh
Confidence 999974 8999999 55544
|
Histidinol-phosphate aminotransferase is a pyridoxal-phosphate dependent enzyme. |
| >PRK06108 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=7.4e-17 Score=186.27 Aligned_cols=301 Identities=13% Similarity=0.116 Sum_probs=192.4
Q ss_pred hhhHHHHHHHHHHHHHHHhC--CCccceec-CcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcE
Q 001989 627 AQGYQEMFNNLGEWLCTITG--FDSFSLQP-NAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMK 703 (985)
Q Consensus 627 ~~G~~~~~~e~~~~la~l~G--~~~~~~~~-~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~ 703 (985)
.+|..++.+.+.+++.+.+| .+...+.. +++++|...++.++ . .++++|+++++.|..+...++..|++
T Consensus 60 ~~G~~~lr~~la~~~~~~~~~~~~~~~i~~t~g~~~al~~~~~~l---~-----~~gd~vl~~~p~y~~~~~~~~~~g~~ 131 (382)
T PRK06108 60 NLGIPELREALARYVSRLHGVATPPERIAVTSSGVQALMLAAQAL---V-----GPGDEVVAVTPLWPNLVAAPKILGAR 131 (382)
T ss_pred CCCCHHHHHHHHHHHHHHhCCCcCcceEEEeCChHHHHHHHHHHh---c-----CCCCEEEEeCCCccchHHHHHHCCCE
Confidence 36777777788888888878 44444444 45555553333322 1 36789999998888887788899999
Q ss_pred EEEEcCCC---CCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccc--cCHHHHHHHHHHcCCEEEEEccccccccC--
Q 001989 704 IVSVGTDA---KGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYE--EGIDEICKIIHDNGGQVYMDGANMNAQVG-- 775 (985)
Q Consensus 704 vv~v~~d~---~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~--~di~eI~~la~~~galliVD~a~~~~~~~-- 775 (985)
++.+|.+. ++.+|+++|+++++ +++++|++++| |++|.+. .++++|.++|+++|+++++|+++......
T Consensus 132 ~~~v~~~~~~~~~~~d~~~l~~~~~---~~~~~i~l~~p~NPtG~~~~~~~~~~l~~~~~~~~~~li~De~y~~~~~~~~ 208 (382)
T PRK06108 132 VVCVPLDFGGGGWTLDLDRLLAAIT---PRTRALFINSPNNPTGWTASRDDLRAILAHCRRHGLWIVADEVYERLYYAPG 208 (382)
T ss_pred EEEeeCCCCCCCccCCHHHHHHhcC---ccceEEEEECCCCCCCcccCHHHHHHHHHHHHHCCcEEEEehhhhhhccCCC
Confidence 99999864 24699999999987 68899999998 5799775 25789999999999999999987421111
Q ss_pred CCCC------CccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhh
Q 001989 776 LTSP------GYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGS 849 (985)
Q Consensus 776 l~~p------g~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~ 849 (985)
-..+ ......+++.|++|+|+. .|.++|++++++++.+.+.... . ....+.+
T Consensus 209 ~~~~~~~~~~~~~~~~i~~~S~SK~~g~----~G~RiG~~~~~~~~~~~~~~~~-~-----------~~~~~~~------ 266 (382)
T PRK06108 209 GRAPSFLDIAEPDDRIIFVNSFSKNWAM----TGWRLGWLVAPPALGQVLEKLI-E-----------YNTSCVA------ 266 (382)
T ss_pred CCCCCHhhcCCCcCCEEEEeechhhccC----cccceeeeeCCHHHHHHHHHHH-H-----------hcccCCC------
Confidence 0001 011234778899998854 3678999999876655442110 0 0011111
Q ss_pred hHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhccCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHH-
Q 001989 850 ALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLM- 928 (985)
Q Consensus 850 ~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~- 928 (985)
.....++...+. .+.+.+++..++..++.+++.+.|++...+.+..+.+..+ +.+.++. ..+..+++++|.
T Consensus 267 ~~~q~a~~~~l~-~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~p~~g~~--~~~~l~~-----~~~~~~~~~~ll~ 338 (382)
T PRK06108 267 QFVQRAAVAALD-EGEDFVAELVARLRRSRDHLVDALRALPGVEVAKPDGAMY--AFFRIPG-----VTDSLALAKRLVD 338 (382)
T ss_pred hHHHHHHHHHHh-CChHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCCeeEE--EEEeCCC-----CCCHHHHHHHHHH
Confidence 111122223332 2334456666677788888999887622222222222222 2345541 246778999885
Q ss_pred HCCCccCC-CCC-C-CCCEEEEeccCCCCHHHHHHHHccCChhHHHH
Q 001989 929 DYGFHGPT-MSW-P-VPGTLMIEPTESESKSWTGIVMLSSPSEKKLH 972 (985)
Q Consensus 929 ~~Gi~~~~-~~~-p-~~~~lris~t~~~t~eeId~~~~~~~l~~~~~ 972 (985)
++||.+.. ..| + ..+++|++++. +.++++. .++.|++.++
T Consensus 339 ~~gV~v~pg~~f~~~~~~~~Ris~~~--~~~~l~~--~l~~l~~~l~ 381 (382)
T PRK06108 339 EAGLGLAPGTAFGPGGEGFLRWCFAR--DPARLDE--AVERLRRFLA 381 (382)
T ss_pred hCCEEEeCchhhCCCCCCEEEEEecC--CHHHHHH--HHHHHHHHHh
Confidence 57998743 222 1 25799999987 8899999 6677776654
|
|
| >PF01276 OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; InterPro: IPR000310 Pyridoxal-dependent decarboxylases are bacterial proteins acting on ornithine, lysine, arginine and related substrates [] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.5e-17 Score=188.50 Aligned_cols=266 Identities=18% Similarity=0.194 Sum_probs=180.9
Q ss_pred HHHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc--
Q 001989 211 ESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL-- 288 (985)
Q Consensus 211 ~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~-- 288 (985)
..|.|+|+.+|+++|++.+.+ +++|+|.++.+++++.. . +||+|++++++|.|+...+.. .|++++++++
T Consensus 66 G~I~eAe~~aA~~fGAd~t~f-lvnGsT~g~~a~i~a~~-~--~gd~VLv~RN~HkSv~~alil----~ga~Pvyi~p~~ 137 (417)
T PF01276_consen 66 GIIKEAEELAARAFGADKTFF-LVNGSTSGNQAMIMALC-R--PGDKVLVDRNCHKSVYNALIL----SGAIPVYIPPED 137 (417)
T ss_dssp THHHHHHHHHHHHHTESEEEE-ESSHHHHHHHHHHHHHT-T--TTCEEEEETT--HHHHHHHHH----HTEEEEEEEEEE
T ss_pred cHHHHHHHHHHHhcCCCeEEE-EecCchHHHHHHHHHhc-C--CCCEEEEcCCcHHHHHHHHHH----cCCeEEEecCCc
Confidence 568899999999999998755 67889999999998763 3 899999999999999998753 4888888754
Q ss_pred ----------------hhhhc-c--CCCEeE---EEEEcCCCCeeeccHHHHHHHHHhCCcEEEEE----ecCccccCCC
Q 001989 289 ----------------KDIDY-K--SGDVCG---VLVQYPGTEGEVLDYGDFIKNAHANGVKVVMA----TDLLALTILK 342 (985)
Q Consensus 289 ----------------~~l~~-l--~~~t~~---V~v~~pn~~G~v~di~~I~~~a~~~galliV~----a~~~~lg~l~ 342 (985)
+++++ + .++.++ |++++|||+|.+.|+++|+++||++|.+++|| ++.....++.
T Consensus 138 ~~~gi~~~i~~~~~~~~~i~~~l~~~p~~k~~~~vvlt~PTY~Gv~~di~~I~~~~h~~~~~llvDEAhGah~~F~~lp~ 217 (417)
T PF01276_consen 138 NEYGIIGGISPDEFNEEDIEEALKEHPDAKAPRLVVLTSPTYYGVCYDIKEIAEICHKHGIPLLVDEAHGAHFGFHPLPR 217 (417)
T ss_dssp -TTS-BEEB-GGGGSHHHHHHHHHHCTTCHCESEEEEESS-TTSEEE-HHHHHHHHCCTECEEEEE-TT-TTGGCSGGGT
T ss_pred cccCCccCCChhhhhHHHHHHHHHhCccccCceEEEEeCCCCCeEEECHHHHHHHhcccCCEEEEEccccccccCCCCcc
Confidence 23333 3 355555 99999999999999999999999999999993 2322223334
Q ss_pred CCCcccce-------EEEecC-ccccccCCCCCCcEEEEEEchhh-HhcCCCceeeeeecCCCCcceeeecccccccccc
Q 001989 343 PPGELGAD-------IVVGSA-QRFGVPMGYGGPHAAFLATSQEY-KRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRR 413 (985)
Q Consensus 343 ~~~~~GaD-------i~v~s~-k~lg~P~~~GGP~~G~l~~~~~~-~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irr 413 (985)
..-.+||| +++.|. |.++.-. ++++++++... ++. .|.
T Consensus 218 ~a~~~gad~~~~~~~~vvqS~HKtL~alt-----Qts~lh~~~~~~v~~----------------------------~~~ 264 (417)
T PF01276_consen 218 SALALGADRPNDPGIIVVQSTHKTLPALT-----QTSMLHVKGDRIVDH----------------------------ERV 264 (417)
T ss_dssp TCSSTTSS-CTSBEEEEEEEHHHHSSS-T-----T-EEEEEETCCCTTH----------------------------HHH
T ss_pred chhhccCccccccceeeeechhhcccccc-----cceEEEecCCCcccH----------------------------HHH
Confidence 45679999 999999 7675432 46888887643 110 000
Q ss_pred cccCCCccchhHHHHHHHHHH--HHHh-CcchHHHHHHHHHHHHHHHHHHH---hcCCCeEEcCC-----CC--------
Q 001989 414 DKATSNICTAQALLANMAAMY--AVYH-GPEGLKTIAQRVHGLAGTFALGL---KKLGTVEVQGL-----PF-------- 474 (985)
Q Consensus 414 e~atsni~t~~~l~a~~aa~~--l~~~-g~~Gl~~i~~~~~~~a~~l~~~L---~~~g~~~~~~~-----~~-------- 474 (985)
..+-+-.-|+++.+.++|++- ..++ +.+| +++.++..+++..++++| +++.+++++++ +.
T Consensus 265 ~~~l~~~~TTSPSY~lmASlD~a~~~m~~~~G-~~l~~~~i~~a~~~R~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 343 (417)
T PF01276_consen 265 NEALSMHQTTSPSYPLMASLDVARAQMEEEEG-RELLEEAIELAEEFRKKINRLNDIWGFKVLGPEDVGGEGCWDLDPGE 343 (417)
T ss_dssp HHHHHHHS-SS--HHHHHHHHHHHHHHSHHHH-HHHHHHHHHHHHHHHHHHHHHCCT-SSEESS-SEECTCCGCB--TT-
T ss_pred HHHHHHHcCCChHHHHHHHHHHHHHHHhhhhh-HHHHHHHHHHHHHHHHHHHhcCCCceEecCCccccCCccccccCccc
Confidence 011111224578888898883 2345 3444 567788889999999999 55534777632 11
Q ss_pred --------------cc--eEEEecC-----------C--HHHHHHHHHHcCceeeeecCCeEEEEeccCCCHH
Q 001989 475 --------------FD--TVKVKCA-----------D--AHAIASAAYKIEMNLRVVDSNTVTASFDETTTLE 518 (985)
Q Consensus 475 --------------~~--~~~~~~~-----------~--~~~v~~~L~~~GI~~~~~~~~~lris~t~~~t~e 518 (985)
++ .+++.+| + +..+.+.|+++||.++..+...+++-++..+|++
T Consensus 344 ~whgf~~~~~~~~~lDP~K~ti~~pG~~~~g~~~~~Gi~g~~~~~~L~~~~I~~Ek~d~~~vL~l~t~G~t~~ 416 (417)
T PF01276_consen 344 NWHGFEGLADDYYMLDPTKLTINTPGIDADGELSELGIPGYIVEKYLREHGIQVEKTDLYNVLFLFTIGDTKE 416 (417)
T ss_dssp TTT--TT--TTSEEE-TTEEEEE-STBETTSSB-SS---HHHHHHHHHHTTEE-SEEESSEEEEE--TTS-HH
T ss_pred cchhchhcccCccccCCcEEEEEccCcCcCCcccccCCCHHHHHHHHHHcCCEEEeccCccEEEEecCCCCCC
Confidence 12 2555542 2 7889999999999999888888999999988875
|
One of the regions of sequence similarity contains a conserved lysine residue, which is the site of attachment of the pyridoxal-phosphate group.; GO: 0003824 catalytic activity; PDB: 1C4K_A 1ORD_A 2X3L_B 3Q16_C 3N75_A 2VYC_D. |
| >PRK06939 2-amino-3-ketobutyrate coenzyme A ligase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=4e-17 Score=189.37 Aligned_cols=296 Identities=16% Similarity=0.169 Sum_probs=195.6
Q ss_pred hhhHHHHHHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEE
Q 001989 627 AQGYQEMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVS 706 (985)
Q Consensus 627 ~~G~~~~~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~ 706 (985)
.+|..++.+++++++++++|.+. .+..++|++++.+++.++ .+++|+|+++++.|.++...+...|.+++.
T Consensus 82 ~~G~~~l~~~l~~~la~~~g~~~-~i~~tsG~~a~~~~~~~l--------~~~gd~vi~~~~~~~~~~~~~~~~~~~~~~ 152 (397)
T PRK06939 82 ICGTQDLHKELEEKLAKFLGTED-AILYSSCFDANGGLFETL--------LGKEDAIISDALNHASIIDGVRLCKAKRYR 152 (397)
T ss_pred ccCCcHHHHHHHHHHHHHhCCCc-EEEEcChHHHHHHHHHHh--------CCCCCEEEEEhhhhHHHHHHHHhcCCceEE
Confidence 45777788899999999999763 466677877665544332 147899999998887777777888998887
Q ss_pred EcCCCCCCCCHHHHHHHHHhc---CCCEEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCC-CC--C
Q 001989 707 VGTDAKGNINIEELRKAAEAN---RDNLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGL-TS--P 779 (985)
Q Consensus 707 v~~d~~g~iD~e~L~~~i~~~---~~~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l-~~--p 779 (985)
++. .|++++++++++. +.++++|+..+. |.+|.+. ++++|.++|+++|+++++|+++..+..+. .. +
T Consensus 153 ~~~-----~d~~~l~~~i~~~~~~~~~~~~v~~~~v~~~~G~~~-~~~~l~~la~~~~~~li~De~~~~g~~~~~~~~~~ 226 (397)
T PRK06939 153 YAN-----NDMADLEAQLKEAKEAGARHKLIATDGVFSMDGDIA-PLPEICDLADKYDALVMVDDSHAVGFVGENGRGTV 226 (397)
T ss_pred eCC-----CCHHHHHHHHHhhhccCCCCeEEEEecCcCCCCCcC-CHHHHHHHHHHhCCEEEEECcccccCcCCCCCCHH
Confidence 775 4899999988631 126777776643 4579887 89999999999999999999984332111 00 0
Q ss_pred ---C-ccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHH
Q 001989 780 ---G-YIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPI 855 (985)
Q Consensus 780 ---g-~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~ 855 (985)
+ ..++|++++|+||+|+ |+.+|++++++++.+.+.... .....++.. .+..+.+
T Consensus 227 ~~~~~~~~~~i~~~S~sK~~~------g~r~G~v~~~~~~~~~l~~~~-----------~~~~~~~~~-----~~~~~~a 284 (397)
T PRK06939 227 EHFGVMDRVDIITGTLGKALG------GASGGYTAGRKEVIDWLRQRS-----------RPYLFSNSL-----APAIVAA 284 (397)
T ss_pred HHcCCCCCCcEEEEECHHHhC------ccCceEEEeCHHHHHHHHHhC-----------ccccccCCC-----CHHHHHH
Confidence 1 1246899999999983 456799998876655442110 000001111 1111222
Q ss_pred HHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCcc
Q 001989 856 SYTYIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHG 934 (985)
Q Consensus 856 a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~ 934 (985)
+.+.+..+. + ..+..++..++++++.+.|++ ++++. .+.+.. +.+.++ .+.+..+++++|.++||.+
T Consensus 285 ~~~al~~~~-~-~~~~~~~~~~~~~~l~~~L~~~~~~~~--~~~~~~---~~~~~~-----~~~~~~~~~~~L~~~gI~v 352 (397)
T PRK06939 285 SIKVLELLE-E-SDELRDRLWENARYFREGMTAAGFTLG--PGEHPI---IPVMLG-----DAKLAQEFADRLLEEGVYV 352 (397)
T ss_pred HHHHHHHHh-c-CHHHHHHHHHHHHHHHHHHHHcCCCcC--CCCCCE---EEEEEC-----CHHHHHHHHHHHHHCCceE
Confidence 334444432 1 234556677888999999986 44432 111222 222222 1234678999999999987
Q ss_pred CCCCCCC----CCEEEEeccCCCCHHHHHHHHccCChhHHHHh
Q 001989 935 PTMSWPV----PGTLMIEPTESESKSWTGIVMLSSPSEKKLHR 973 (985)
Q Consensus 935 ~~~~~p~----~~~lris~t~~~t~eeId~~~~~~~l~~~~~~ 973 (985)
....+|. .+.+|++++..++++||++ +++.|++++++
T Consensus 353 ~~~~~~~~~~~~~~iRi~~~~~~~~~~i~~--~l~~L~~~~~~ 393 (397)
T PRK06939 353 IGFSFPVVPKGQARIRTQMSAAHTKEQLDR--AIDAFEKVGKE 393 (397)
T ss_pred eeeCCCCCCCCCceEEEEECCCCCHHHHHH--HHHHHHHHHHH
Confidence 5433431 3679999999999999999 77888887764
|
|
| >PRK13392 5-aminolevulinate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=4e-17 Score=190.36 Aligned_cols=311 Identities=14% Similarity=0.145 Sum_probs=193.4
Q ss_pred cceecCCCCCCCCCcHHHHHHHHhCCccccccCCChhhHhhhHHHHHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHH
Q 001989 167 YKSFIGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAM 246 (985)
Q Consensus 167 ~~~~lG~g~y~~~~p~~v~~~i~~~~~~~t~~~pyq~e~sqg~l~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~ 246 (985)
.++|+|.+..|..+.+... .+ .+ +.+ ++..+....|..+...++++.+|+++|.+. ..++.+|+.+.++++.
T Consensus 53 sn~yl~l~~~p~v~~a~~~-~~-~~--~~~--~~~~s~~~~~~~~~~~~Le~~la~~~g~~~--~i~~~sG~~a~~~~i~ 124 (410)
T PRK13392 53 SNDYLGMGQHPDVIGAMVD-AL-DR--YGA--GAGGTRNISGTSHPHVLLERELADLHGKES--ALLFTSGYVSNDAALS 124 (410)
T ss_pred CCCccCCCCCHHHHHHHHH-HH-HH--cCC--CCchhhhcccChHHHHHHHHHHHHHhCCCC--EEEECcHHHHHHHHHH
Confidence 4567888754433333332 22 22 111 111222334555567789999999999753 5566677766555554
Q ss_pred HhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc---hhhhc-c----CCCEeEEEEEcC-CCCeeeccHHH
Q 001989 247 CNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL---KDIDY-K----SGDVCGVLVQYP-GTEGEVLDYGD 317 (985)
Q Consensus 247 a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~---~~l~~-l----~~~t~~V~v~~p-n~~G~v~di~~ 317 (985)
++.. ..+++.|+++...|.++...++ ..|.++..++. +++++ + +++|++|++.+| |++|.+.|+++
T Consensus 125 ~l~~-~~~g~~vi~~~~~h~s~~~~~~----~~g~~~~~~~~~d~~~l~~~l~~~~~~~t~~v~i~~~~n~tG~~~~l~~ 199 (410)
T PRK13392 125 TLGK-LLPGCVILSDALNHASMIEGIR----RSGAEKQVFRHNDLADLEEQLASVDPDRPKLIAFESVYSMDGDIAPIEA 199 (410)
T ss_pred HHhc-CCCCCEEEEehhhhHHHHHHHH----HcCCeEEEEeCCCHHHHHHHHHhccCCCCEEEEEeCCCCCCcccccHHH
Confidence 3211 1267889998899999988764 24666665532 33433 2 357899999998 78999999999
Q ss_pred HHHHHHhCCcEEEEEecCccccCCCCCC---------cccceEEEecC-ccccccCCCCCCcEEEEEEchhhHhcCCCce
Q 001989 318 FIKNAHANGVKVVMATDLLALTILKPPG---------ELGADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRI 387 (985)
Q Consensus 318 I~~~a~~~galliV~a~~~~lg~l~~~~---------~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~ 387 (985)
|.++|+++|++++|| +.+++|.+.+.+ .-.+|+++++. |.|+++ | |+++.++++++.+...
T Consensus 200 i~~l~~~~~~~livD-ea~~~g~~g~~g~g~~~~~~~~~~~div~~tlsK~~g~~------G-G~~~~~~~~~~~l~~~- 270 (410)
T PRK13392 200 ICDLADRYNALTYVD-EVHAVGLYGARGGGIAERDGLMDRIDMIQGTLAKAFGCL------G-GYIAASADLIDFVRSF- 270 (410)
T ss_pred HHHHHHHcCCEEEEE-CCccccCcCCCCCchhhhccCCCCCcEEEEEChHhhhcc------c-chhhcCHHHHHHHHHh-
Confidence 999999999999994 455555432211 11468888887 888642 2 6887777766543100
Q ss_pred eeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCe
Q 001989 388 VGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTV 467 (985)
Q Consensus 388 vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~ 467 (985)
.+.|.+ +... ++....+..+++ ..+... .+..++..++.+++++.|+++| +
T Consensus 271 ---------~~~~~~--------------s~~~-~~~~~~a~~aaL--~~~~~~--~~~~~~~~~~~~~l~~~L~~~g-~ 321 (410)
T PRK13392 271 ---------APGFIF--------------TTAL-PPAVAAGATAAI--RHLKTS--QTERDAHQDRVAALKAKLNANG-I 321 (410)
T ss_pred ---------Ccchhc--------------cCcC-CHHHHHHHHHHH--HHHhcC--HHHHHHHHHHHHHHHHHHHHcC-C
Confidence 000100 0111 011222333333 333222 2345677888999999999987 7
Q ss_pred EEcCCCCcceEEEecCC---HHHHHHHHH-HcCceeeeec-------CCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 468 EVQGLPFFDTVKVKCAD---AHAIASAAY-KIEMNLRVVD-------SNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 468 ~~~~~~~~~~~~~~~~~---~~~v~~~L~-~~GI~~~~~~-------~~~lris~t~~~t~edId~li~aL~~ 529 (985)
++..+ ..+.+.+..+. +.++.++|. ++||.+.... ...+|++++..+|++|+|+++++|.+
T Consensus 322 ~~~~~-~~~~~~i~~~~~~~~~~~~~~L~~~~GI~v~~~~~p~~~~~~~~lRis~~~~~t~edid~l~~aL~~ 393 (410)
T PRK13392 322 PVMPS-PSHIVPVMVGDPTLCKAISDRLMSEHGIYIQPINYPTVPRGTERLRITPTPLHDDEDIDALVAALVA 393 (410)
T ss_pred CCCCC-CCCEEEEEeCCHHHHHHHHHHHHHhCCEEEeeeCCCCCCCCCceEEEEECCCCCHHHHHHHHHHHHH
Confidence 76532 12223333332 568999886 6799886531 25799999999999999999999974
|
|
| >KOG2862 consensus Alanine-glyoxylate aminotransferase AGT1 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.77 E-value=9.3e-17 Score=168.03 Aligned_cols=310 Identities=15% Similarity=0.125 Sum_probs=209.0
Q ss_pred HHHHHHHHHHHHHHHhCCCcc--ceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHH----HHHHCCcE
Q 001989 630 YQEMFNNLGEWLCTITGFDSF--SLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPA----TAAMCGMK 703 (985)
Q Consensus 630 ~~~~~~e~~~~la~l~G~~~~--~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~----~a~~~G~~ 703 (985)
..+++.++.+-+..+|..... .++.++|..|.++++.-+. .++|+|++-.. |.+.. .++..|++
T Consensus 48 ~~qIm~~v~egikyVFkT~n~~tf~isgsGh~g~E~al~N~l--------ePgd~vLv~~~--G~wg~ra~D~~~r~ga~ 117 (385)
T KOG2862|consen 48 FVQIMDEVLEGIKYVFKTANAQTFVISGSGHSGWEAALVNLL--------EPGDNVLVVST--GTWGQRAADCARRYGAE 117 (385)
T ss_pred HHHHHHHHHHHHHHHhccCCCceEEEecCCcchHHHHHHhhc--------CCCCeEEEEEe--chHHHHHHHHHHhhCce
Confidence 446777888888888876553 4567888888887765332 47888887543 33322 25789999
Q ss_pred EEEEcCCCCCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccC-HHHHHHHHHHcCCEEEEEccccccccCC-CCCC
Q 001989 704 IVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEG-IDEICKIIHDNGGQVYMDGANMNAQVGL-TSPG 780 (985)
Q Consensus 704 vv~v~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~d-i~eI~~la~~~galliVD~a~~~~~~~l-~~pg 780 (985)
|..|+.+..+.+.++.+++++.+| +.++|++++. +.+|+.+ | ++.+.++||+|+++++||++.+ +++. -...
T Consensus 118 V~~v~~~~G~~~~le~i~~~lsqh--~p~~vfv~hgdsSTgV~q-~~~~~~g~lc~k~~~lllVD~VaS--lggt~F~mD 192 (385)
T KOG2862|consen 118 VDVVEADIGQAVPLEEITEKLSQH--KPKAVFVTHGDSSTGVLQ-DLLAISGELCHKHEALLLVDTVAS--LGGTEFEMD 192 (385)
T ss_pred eeEEecCcccCccHHHHHHHHHhc--CCceEEEEecCccccccc-hHHHHHHHHhhcCCeEEEEechhh--cCCccceeh
Confidence 999998888899999999999975 4567888886 5699999 6 8888999999999999999864 4443 1457
Q ss_pred ccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCc---cccCCCC---CC-C--CCC-CCCCCCCCcchhhh
Q 001989 781 YIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHP---VVSTGGI---PA-P--EKS-QPLGTIAAAPWGSA 850 (985)
Q Consensus 781 ~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~---~g~~~~~---~~-~--~~~-~~~~~i~s~~~g~~ 850 (985)
+||+|+.-..++|.++.| ||+++|+.++.....+..+- +...-|. ++ | ..+ +......+ -+.
T Consensus 193 ewgVDvaytgSQKaL~aP-----~GLsiisfS~ka~~~~~~rK~~~~~~yFd~~~~~~~wgc~~e~~~yhhT~p---v~l 264 (385)
T KOG2862|consen 193 EWGVDVAYTGSQKALGAP-----AGLSIISFSDKALEAIRDRKTKPVSFYFDILRLGNFWGCDGEPRAYHHTPP---VQL 264 (385)
T ss_pred hhcccEEEecchhhcCCC-----CCcceeecCHHHHHHHhhccCCceEEEEeHHhhcchhccCCcccccccCCc---HHH
Confidence 899999999999999644 58899998876544332110 0000010 00 0 000 01111111 011
Q ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCC--CceeeEEEEEecCccccCCCCHHHHHHHH
Q 001989 851 LILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVN--GTVAHEFIVDLRGLKNTAGIEPEDVAKRL 927 (985)
Q Consensus 851 ~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~--~~~~~~~iv~~~~~~~~~g~~~~~v~~~L 927 (985)
+ -.--++|+.+-++|+.+..+++.+++++++..|++ |++.....+. .+.. ..+.++ .+++..+|+.++
T Consensus 265 l--y~Lr~AL~~I~eeGL~~~~~rH~e~s~~l~~~l~~~GLq~fv~~e~~rlptv--ttv~vp-----~gvDw~dVv~~~ 335 (385)
T KOG2862|consen 265 L--YSLRAALALIAEEGLENSWRRHREMSKWLKLSLEALGLQLFVVDEELRLPTV--TTVKVP-----YGVDWKDVVAYA 335 (385)
T ss_pred H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccceecChhhccCcc--eeeecC-----CCCCHHHHHHHH
Confidence 1 11125567777899999999999999999999998 7765332211 1222 234444 478999999999
Q ss_pred HHC-CCccCC-CCCCCCCEEEEecc-CCCCHHHHHHHHccCChhHHHHh
Q 001989 928 MDY-GFHGPT-MSWPVPGTLMIEPT-ESESKSWTGIVMLSSPSEKKLHR 973 (985)
Q Consensus 928 ~~~-Gi~~~~-~~~p~~~~lris~t-~~~t~eeId~~~~~~~l~~~~~~ 973 (985)
+++ ++.++. +..-++..+||... ..-+.|-||+ .++.|++.+++
T Consensus 336 ~~~~~vei~gglg~~~gKv~RIGl~gcna~~e~i~~--v~~ll~~alq~ 382 (385)
T KOG2862|consen 336 MSHYVVEIGGGLGPTVGKVFRIGLLGCNANVEYIDN--VVELLKLALQR 382 (385)
T ss_pred HHhcCEEeccccCCCcccEEEEEEeeccCCcHHHHH--HHHHHHHHHhh
Confidence 887 555543 32224567899876 4567788888 56777777654
|
|
| >PRK07678 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.77 E-value=7.8e-17 Score=189.03 Aligned_cols=344 Identities=16% Similarity=0.189 Sum_probs=207.8
Q ss_pred ccccccccCCCccccccccccccccccCCCCchhhhhhHHHHHHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHH
Q 001989 592 IPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAY 671 (985)
Q Consensus 592 ~~lG~~t~~~~~~~~~~~~~~~~f~~~~p~~p~e~~~G~~~~~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~ 671 (985)
..||++++.+..+...+......+...++. +...++.+.|+++++.....++.+||++|++++++.+|.|
T Consensus 59 ~~lGh~~p~v~~ai~~q~~~~~~~~~~~~~----------~~~~~lae~l~~~~~~~~~v~f~~sGseA~e~AlklAr~~ 128 (451)
T PRK07678 59 VNVGYGRKELAEAAYEQLKTLSYFPLTQSH----------EPAIKLAEKLNEWLGGEYVIFFSNSGSEANETAFKIARQY 128 (451)
T ss_pred hcCCCCCHHHHHHHHHHHHhcCccccccCC----------HHHHHHHHHHHHhCCCCCEEEEeCCcHHHHHHHHHHHHHH
Confidence 458888777776554443222222111111 1234778888888865444577899999999999999988
Q ss_pred HHhcCCCCCCEEEE-cCCCCcccHHHHHHCCc------------EEEEEcCCCCCC---------CC---HHHHHHHHH-
Q 001989 672 HKARGDHHRNVCII-PVSAHGTNPATAAMCGM------------KIVSVGTDAKGN---------IN---IEELRKAAE- 725 (985)
Q Consensus 672 ~~~~g~~~~~~IIv-~~~~Hg~~~~~a~~~G~------------~vv~v~~d~~g~---------iD---~e~L~~~i~- 725 (985)
...+|..++.+||. ...+||....+....|. .+..+|.....+ .| ++.+++.++
T Consensus 129 t~~~g~~~r~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 208 (451)
T PRK07678 129 HAQKGEPHRYKFISRYRAYHGNSMGALAATGQAQRKYKYEPLAPGFLHVPPPDCYRMPGIESEDIYDLECVKEIDRVMTW 208 (451)
T ss_pred HHhcCCCCCcEEEEECCCcCCccHHHhhcCCCcccccccCCCCCCCEEeCCCccccccccCChHHHHHHHHHHHHHHHHh
Confidence 64444334566765 66899987655432221 123333321111 12 234566675
Q ss_pred hcCCCEEEEEEEcC-CCcccccc---CHHHHHHHHHHcCCEEEEEccccccccCCCCCCc------cC--CcEEEeCCcc
Q 001989 726 ANRDNLSTLMVTYP-STHGVYEE---GIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGY------IG--ADVCHLNLHK 793 (985)
Q Consensus 726 ~~~~~t~~Vvv~~p-n~~G~i~~---di~eI~~la~~~galliVD~a~~~~~~~l~~pg~------~g--~Di~~~s~hK 793 (985)
.+.+++++|+++-. ...|++.+ -++++.++|+++|+++|+|+++ .|+.+.|. +| +|+++++ |
T Consensus 209 ~~~~~iAAvi~EPiqg~gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~----tGfGRtG~~~~~~~~gv~PDivt~g--K 282 (451)
T PRK07678 209 ELSETIAAVIMEPIITGGGVLMPPQDYMKAVKEICQKHGALLISDEVI----CGFGRTGKAFGFMNYGVKPDIITMA--K 282 (451)
T ss_pred cCCCceEEEEEccccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehh----hcCCcCchhHHHHhcCCCCCEEEee--c
Confidence 33467899998753 34566652 2899999999999999999886 34444442 22 7998763 7
Q ss_pred cccccCCCCC-CceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHHHHHHH
Q 001989 794 TFCIPHGGGG-PGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEAS 872 (985)
Q Consensus 794 ~l~~p~g~GG-Pg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl~~~~ 872 (985)
.++ +|. | +|.+++++++.+.+..... .......+++.|+++.++++.+.|..+..+++.
T Consensus 283 ~lg----gG~~P-i~av~~~~~i~~~~~~~~~------------~~~~~h~~T~~gnp~~~aaa~a~l~~l~~~~~~--- 342 (451)
T PRK07678 283 GIT----SAYLP-LSATAVKKEIYEAFKGKGE------------YEHFRHVNTFGGNPAACALALKNLEIMENENLI--- 342 (451)
T ss_pred ccc----cCCcc-eeEEEEcHHHHHHHhccCc------------ccccccCCCCCcCHHHHHHHHHHHHHHHhCCHH---
Confidence 764 343 5 6666778776654432100 000011235667888888889999988776543
Q ss_pred HHHHHHHHHHHHHhhcc---CCee--ecCCCCceeeEEEEEecC-cccc-CCCCHHHHHHHHHHCCCccCCCCC--C-CC
Q 001989 873 KIAILNANYMAKRLEKH---YPIL--FRGVNGTVAHEFIVDLRG-LKNT-AGIEPEDVAKRLMDYGFHGPTMSW--P-VP 942 (985)
Q Consensus 873 ~~~~~~a~~l~~~L~~g---~~l~--~~~~~~~~~~~~iv~~~~-~~~~-~g~~~~~v~~~L~~~Gi~~~~~~~--p-~~ 942 (985)
++..++.++|+++|++. ..++ ..+. + .+..+.+.-+. .+.. .......+.+.|.++|+++..... | ..
T Consensus 343 ~~~~~~g~~l~~~l~~~~~~~~~v~~vrg~-G-l~~~i~~~~~~~~~~~~~~~~a~~i~~~l~~~Gv~~~~~g~~v~~~~ 420 (451)
T PRK07678 343 ERSAQLGELLLEQLKEELGEHPLVGDIRGK-G-LLVGIELVNDKETKEPADNDKVASVVAACKEKGLIIGKNGDTVAGYN 420 (451)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCEEEEEee-c-eEEEEEEecCCcccCcCchHHHHHHHHHHHHCCcEEeecCccccCCC
Confidence 45667778888877541 2221 1121 1 12112221000 0000 001145788889999998753221 1 13
Q ss_pred CEEEEeccCCCCHHHHHHHHccCChhHHHHhhc
Q 001989 943 GTLMIEPTESESKSWTGIVMLSSPSEKKLHRLK 975 (985)
Q Consensus 943 ~~lris~t~~~t~eeId~~~~~~~l~~~~~~~~ 975 (985)
+.||++|+..+|++|||+ +++++++++.++|
T Consensus 421 ~~lrl~Ppl~it~~eid~--~~~~l~~~l~~~~ 451 (451)
T PRK07678 421 NVLTLSPPLVISSEEIAF--IVGTLKTALERIK 451 (451)
T ss_pred CEEEEECCCcCCHHHHHH--HHHHHHHHHHhcC
Confidence 789999999999999999 8899999988765
|
|
| >PRK13393 5-aminolevulinate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=5.5e-17 Score=188.91 Aligned_cols=312 Identities=13% Similarity=0.139 Sum_probs=196.5
Q ss_pred ccceecCCCCCCCCCcHHHHHHHHhCCccccccCCChhhHhhhHHHHHHHHHHHHHHhcCCCCcceeeccchHHHHHHHH
Q 001989 166 VYKSFIGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMA 245 (985)
Q Consensus 166 ~~~~~lG~g~y~~~~p~~v~~~i~~~~~~~t~~~pyq~e~sqg~l~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~ 245 (985)
..++|||...+|..+.+... ++ .+ |.+. +..+....|..+...++++.+|+++|.+. +.++++|+.+.++++
T Consensus 51 ~sn~ylgl~~~p~v~~a~~~-~~-~~--~~~~--~~~s~~~~~~~~~~~~le~~la~~~g~~~--~~~~~SG~~An~~ai 122 (406)
T PRK13393 51 CSNDYLGMGQHPAVLAAMHE-AL-DT--CGAG--AGGTRNISGTNHYHVLLEAELADLHGKEA--ALLFTSGYVSNWAAL 122 (406)
T ss_pred ecccccCCCCCHHHHHHHHH-HH-HH--cCCC--CcccccccCChHHHHHHHHHHHHHhCCCc--EEEeCCcHHHHHHHH
Confidence 45678888876554444442 32 22 2221 11223333556677889999999999754 567777776666655
Q ss_pred HHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEe---Cchhhhc-c---C-CCEeEEEEEcC-CCCeeeccHH
Q 001989 246 MCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVS---DLKDIDY-K---S-GDVCGVLVQYP-GTEGEVLDYG 316 (985)
Q Consensus 246 ~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v---~~~~l~~-l---~-~~t~~V~v~~p-n~~G~v~di~ 316 (985)
.++. ...+++.|++++..|+++...++. .|.+++.+ |++++++ + + +++++|++.++ |++|.+.|++
T Consensus 123 ~~l~-~~~~g~~I~~~~~~H~s~~~~~~~----~g~~~~~~~~~d~~~l~~~l~~~~~~~~~~v~~~~v~~~~G~~~~l~ 197 (406)
T PRK13393 123 STLG-SRLPGCVILSDELNHASMIEGIRH----SRAEKRIFRHNDPADLERKLSDLDPHRPKLVAFESVYSMDGDIAPIA 197 (406)
T ss_pred HHhh-cCCCCCEEEEccchhHHHHHHHHH----cCCeEEEeCCCCHHHHHHHHHhccCCCCEEEEEcCCCCCCCchhCHH
Confidence 4322 112568888889999999999853 35555554 4455554 3 2 46788888887 6899999999
Q ss_pred HHHHHHHhCCcEEEEEecCccccCCCCCCc---------ccceEEEecC-ccccccCCCCCCcEEEEEEchhhHhcCCCc
Q 001989 317 DFIKNAHANGVKVVMATDLLALTILKPPGE---------LGADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGR 386 (985)
Q Consensus 317 ~I~~~a~~~galliV~a~~~~lg~l~~~~~---------~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~ 386 (985)
+|.++|+++|++++|| +.++.|++.+.+. -..||++++. |.|+.+ | |++..++++.+.+..
T Consensus 198 ~i~~l~~~~~~~livD-ea~~~g~~g~~G~g~~~~~~~~~~~~i~~~tlsKa~g~~---G----G~~~~~~~~~~~l~~- 268 (406)
T PRK13393 198 EICDVAEKHGAMTYLD-EVHAVGLYGPRGGGIAEREGLADRLTIIEGTLAKAFGVM---G----GYITGSAALCDFIRS- 268 (406)
T ss_pred HHHHHHHHcCCEEEEE-CCccccccCCCCCchhhhcCCCCCCeEEEEeCchhhccc---C----ceeeCCHHHHHHHHH-
Confidence 9999999999999994 4555555432221 1258888886 888642 2 677777776655410
Q ss_pred eeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCC
Q 001989 387 IVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGT 466 (985)
Q Consensus 387 ~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~ 466 (985)
..+.|.+ ++-.++....+..+++ ..+...+. ..++..++.+++++.|+++|
T Consensus 269 ---------~~~~~~~---------------t~~~~p~~~aa~~aaL--~~~~~~~~--~~~~~~~~~~~l~~~L~~~g- 319 (406)
T PRK13393 269 ---------FASGFIF---------------TTSLPPAVAAGALASV--RHLKASSA--ERERHQDRVARLRARLDKAG- 319 (406)
T ss_pred ---------hCcCcee---------------cCccCHHHHHHHHHHH--HHHhhCHH--HHHHHHHHHHHHHHHHHHcC-
Confidence 0000110 0000111222333333 33333332 23566788999999999887
Q ss_pred eEEcCCCCcceEEEecCC---HHHHHHHHHH-cCceeeee-----c--CCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 467 VEVQGLPFFDTVKVKCAD---AHAIASAAYK-IEMNLRVV-----D--SNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~---~~~v~~~L~~-~GI~~~~~-----~--~~~lris~t~~~t~edId~li~aL~~ 529 (985)
++++.. ..+.+.+..++ +.++.++|.+ +||.++.. . .+.+|++++.++|++|||+++++|..
T Consensus 320 ~~~~~~-~~~i~~v~~~~~~~~~~l~~~L~~~~Gi~v~~~~~p~~p~g~~~iRis~~~~~t~edid~l~~~l~~ 392 (406)
T PRK13393 320 IPHLPN-PSHIVPVMVGDPVLCKQISDELLDRYGIYVQPINYPTVPRGTERLRITPSPLHTDADIEHLVQALSE 392 (406)
T ss_pred CCcCCC-CCCeEEEEeCCHHHHHHHHHHHHHhCCEEEEeECCCCCCCCCceEEEEECCCCCHHHHHHHHHHHHH
Confidence 765532 11223333332 6789999987 59988643 1 26799999999999999999999974
|
|
| >PRK09064 5-aminolevulinate synthase; Validated | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.9e-17 Score=190.31 Aligned_cols=311 Identities=14% Similarity=0.176 Sum_probs=195.2
Q ss_pred ccceecCCCCCCCCCcHHHHHHHHhCCccccccCCChhhHhhhHHHHHHHHHHHHHHhcCCCCcceeeccchHHHHHHHH
Q 001989 166 VYKSFIGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMA 245 (985)
Q Consensus 166 ~~~~~lG~g~y~~~~p~~v~~~i~~~~~~~t~~~pyq~e~sqg~l~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~ 245 (985)
+.++|||.+..|..+.+... . +.+.+ + ++..+....|..+...++++.+|+++|.+. ..++.+|+.+.++++
T Consensus 52 ~s~dylgl~~~p~v~~a~~~-~-~~~~~--~--~~~~s~~~~g~~~~~~~l~~~la~~~g~~~--~~~~~sG~~an~~ai 123 (407)
T PRK09064 52 CSNDYLGMGQHPKVIEAMIE-A-LDRCG--A--GAGGTRNISGTNHYHVELERELADLHGKEA--ALVFTSGYVSNDATL 123 (407)
T ss_pred ECCCCcCCCCCHHHHHHHHH-H-HHHcC--C--CCCCcCcCccCHHHHHHHHHHHHHHhCCCc--EEEECcHHHHHHHHH
Confidence 45678888864432222221 2 22221 1 111223334556778889999999999653 556677776656554
Q ss_pred HH-hhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEe---Cchhhhc-cC----CCEeEEEEEcC-CCCeeeccH
Q 001989 246 MC-NNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVS---DLKDIDY-KS----GDVCGVLVQYP-GTEGEVLDY 315 (985)
Q Consensus 246 ~a-~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v---~~~~l~~-l~----~~t~~V~v~~p-n~~G~v~di 315 (985)
.. .+. .+++.|+.+...|.+....++. .++++..+ |++++++ +. +++++|++.++ |++|.+.|+
T Consensus 124 ~~l~~~--~~~~~i~~~~~~h~s~~~~~~~----~~~~~~~~~~~d~~~le~~l~~~~~~~~~~v~~~~v~s~~G~~~~l 197 (407)
T PRK09064 124 STLAKL--IPDCVIFSDELNHASMIEGIRR----SRCEKHIFRHNDVAHLEELLAAADPDRPKLIAFESVYSMDGDIAPI 197 (407)
T ss_pred HHHhCC--CCCCEEEEeCcchHHHHHHHHH----cCCcEEEECCCCHHHHHHHHHhccCCCCeEEEEeCCCCCCccccCH
Confidence 33 222 2567777787889999888753 34454443 3456665 42 56888999887 789999999
Q ss_pred HHHHHHHHhCCcEEEEEecCccccCCCCCC---------cccceEEEecC-ccccccCCCCCCcEEEEEEchhhHhcCCC
Q 001989 316 GDFIKNAHANGVKVVMATDLLALTILKPPG---------ELGADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPG 385 (985)
Q Consensus 316 ~~I~~~a~~~galliV~a~~~~lg~l~~~~---------~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~ 385 (985)
++|.++|+++|++++|| +.+++|.+.+.+ ....||++++. |.||.+ | |++++++++++.+..
T Consensus 198 ~~i~~l~~~~~~~livD-Ea~~~G~~g~~g~g~~~~~~~~~~~div~~t~sKa~g~~---G----G~~~~~~~~~~~l~~ 269 (407)
T PRK09064 198 AEICDLADKYNALTYLD-EVHAVGMYGPRGGGIAERDGLMDRIDIIEGTLAKAFGVM---G----GYIAGSAALVDAVRS 269 (407)
T ss_pred HHHHHHHHHcCCEEEEE-CCCcccccCCCCCChHHhcCCCCCCeEEEEecchhhhcc---C----ceEecCHHHHHHHHH
Confidence 99999999999999994 455555433221 12468998887 888632 2 688888877665410
Q ss_pred ceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCC
Q 001989 386 RIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLG 465 (985)
Q Consensus 386 ~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g 465 (985)
. .+.|.+ |... ++....+..+++ .++... +...++..++.+++++.|+++|
T Consensus 270 ~----------~~~~~~--------------t~~~-~~~~~~aa~~al--~~~~~~--~~~~~~~~~~~~~l~~~L~~~g 320 (407)
T PRK09064 270 Y----------APGFIF--------------TTSL-PPAIAAAALASI--RHLKES--NEERERHQERAAKLKAALDAAG 320 (407)
T ss_pred h----------Cccccc--------------cCcC-CHHHHHHHHHHH--HHHhcC--HHHHHHHHHHHHHHHHHHHHcC
Confidence 0 000110 0000 011122222332 444333 3456778899999999999987
Q ss_pred CeEEcCCCCcceEEEecCC---HHHHHHHHHH-cCceeeeec-------CCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 466 TVEVQGLPFFDTVKVKCAD---AHAIASAAYK-IEMNLRVVD-------SNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~---~~~v~~~L~~-~GI~~~~~~-------~~~lris~t~~~t~edId~li~aL~~ 529 (985)
++++.+. .+.+.+..++ +.++.++|.+ +||.++... .+.+|++++.++|++|+|+++++|.+
T Consensus 321 -~~~~~~~-~~iv~i~~~~~~~~~~l~~~L~~~~gi~v~~~~~p~~~~~~~~lRis~~~~~t~edi~~l~~~l~~ 393 (407)
T PRK09064 321 -IPVMPNE-SHIVPVMVGDPEKCKKASDMLLEEHGIYVQPINYPTVPRGTERLRITPTPFHTDEMIDHLVEALVE 393 (407)
T ss_pred -CCCCCCC-CCEEEEEeCCHHHHHHHHHHHHHhCCEEEeeECCCCCCCCCceEEEEeCCCCCHHHHHHHHHHHHH
Confidence 8766421 2223344332 6789998875 599886531 25799999999999999999999974
|
|
| >COG0076 GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.3e-16 Score=185.25 Aligned_cols=328 Identities=16% Similarity=0.189 Sum_probs=216.4
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhcCCCccce----ecCCCCCCCCCcHHHHHHHHhCCccccccCCChhhHhhhHHHHHH
Q 001989 139 MKFSKFDEGLTESQMIEHMQKLASMNKVYKS----FIGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLL 214 (985)
Q Consensus 139 ~~lp~~~~~~se~e~~~~~~~l~~~n~~~~~----~lG~g~y~~~~p~~v~~~i~~~~~~~t~~~pyq~e~sqg~l~~i~ 214 (985)
-.+| +.+.++.+++.++..+..++..+.. +...+.-+..+|+...+.+.. +..-+...++.+.++.....
T Consensus 31 ~~~p--~~g~p~~~v~~~l~~~~~~d~~~~~~~p~~~~~~~~~~~~~~~a~~~~~~----~~~~nl~d~~~~p~a~~~E~ 104 (460)
T COG0076 31 RMAP--EKGEPLEEVLDELAELLIKDELYLDGHPRANLAGFCPTRVPPVAAELLVS----ALNKNLGDPDESPAAAELEE 104 (460)
T ss_pred ccCC--ccCCchhhHHHHHHHHhhcccccccCCcceEEEccCCCCCHHHHHHHHHH----HHhhcCCCcccChhHHHHHH
Confidence 3566 5788999999999999777654321 222333334456665433332 22235556677778889999
Q ss_pred HHHHHHHHhcCC-CCcceeeccchHHHHHHHHHHhhhhc----C-------CCCEEEEcCCCChhHHHHHHHhhcCCCeE
Q 001989 215 NFQTMIADLTGL-PMSNASLLDEGTAAAEAMAMCNNIQK----G-------KKKTFIIASNCHPQTIDICITRADGFDIK 282 (985)
Q Consensus 215 e~q~~ia~L~g~-~~~~~sl~~~~ta~~ea~~~a~~~~~----~-------~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~ 282 (985)
+.-.|+++|+|. +....+++.|||.++.-.+++.+... . ...+||+|...|.|+.+.++. .|++
T Consensus 105 ~~v~~l~~l~~~~~~~~G~~t~GgTean~lal~aar~~~~~~~~~~~~~~~~~P~ii~s~~aH~s~~Kaa~~----lG~~ 180 (460)
T COG0076 105 RVVNMLSDLLGAPEEASGTFTSGGTEANLLALLAARERWRKRALAESGKPGGKPNIVCSETAHFSFEKAARY----LGLG 180 (460)
T ss_pred HHHHHHHHHhCCCCCCceEEEcChHHHHHHHHHHHHHHHHHHhhhcccccCCCCeEEecCcchhHHHHHHHH----hCCC
Confidence 999999999999 55567888999966553333322210 0 022799999999999999764 3444
Q ss_pred EEEe---------Cchhhhc-cCCCEeE--EEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCcccc--CCCCCCcc
Q 001989 283 VVVS---------DLKDIDY-KSGDVCG--VLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALT--ILKPPGEL 347 (985)
Q Consensus 283 v~~v---------~~~~l~~-l~~~t~~--V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg--~l~~~~~~ 347 (985)
.+.+ |++++++ ++++|.. |+.+.+ +.+|.++||++|+++|+++|++++|++-.-++- .....+.|
T Consensus 181 ~~~v~~~~~~~~id~~~l~~~i~~~t~~g~vV~~aGtT~~G~iDdi~~ia~ia~~~~i~lHVDAA~GG~~~pf~~~~~~~ 260 (460)
T COG0076 181 LRRVPTVPTDYRIDVDALEEAIDENTIGGVVVGTAGTTDTGSIDDIEELADIAEEYGIWLHVDAAFGGFLLPFLEPDGRW 260 (460)
T ss_pred ceeEEeccCccccCHHHHHHHHHhhccCceEEEEecCCCCCccCCHHHHHHHHHHcCCcEEEEccccceeecccCccchh
Confidence 4443 2356777 7777776 777777 579999999999999999999999965221111 12222343
Q ss_pred -----cceEEEecC-ccccccCCCCCCcEEEEEEchh--hHhcCC--CceeeeeecCCCCcceeeecccccccccccccC
Q 001989 348 -----GADIVVGSA-QRFGVPMGYGGPHAAFLATSQE--YKRMMP--GRIVGVSIDSSGKPALRVAMQTREQHIRRDKAT 417 (985)
Q Consensus 348 -----GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~--~~~~lp--~~~vG~t~d~~g~~~~~l~l~tre~~irre~at 417 (985)
+||-++.++ |.+..|. ++|++.+|++ +.+.+- ..+.+.+ +.+.|.+.. +|
T Consensus 261 ~f~l~~vdSIt~d~HK~g~aP~-----~~G~il~rd~e~l~~~~~~~~~yl~~~----~~~~~ti~~-sr---------- 320 (460)
T COG0076 261 DFGLEGVDSITVDGHKYGLAPI-----GCGVVLFRDEEALRRILIFADYYLPGG----GIPNFTILG-SR---------- 320 (460)
T ss_pred hcCCCCceEEEECcccccCCCC-----CceEEEEECHHHhhhhhhcccccCCCC----CcCceeEee-cc----------
Confidence 789999999 5555564 4567777764 333321 1111100 111122211 11
Q ss_pred CCccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCCCcceEEEecCC----HHHHHHHHH
Q 001989 418 SNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDTVKVKCAD----AHAIASAAY 493 (985)
Q Consensus 418 sni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~----~~~v~~~L~ 493 (985)
.+-.++..-.-+..+|.+|++++.+++.++++||+++|++.|.++++.+|..+.|+|+.++ ..+...++.
T Consensus 321 ------~~~~~~~~~~~l~~lG~eGy~~l~~~~~~~a~~la~~l~~~~~~e~~~~p~l~~V~fr~~~~~~~~~~~~~~~~ 394 (460)
T COG0076 321 ------PGRQALALYANLRRLGREGYRKLLDRTLELARYLAEELEKLGDFELVNEPELPIVAFRLKDDEDTLADLSERLD 394 (460)
T ss_pred ------chHHHHHHHHHHHHhCHhHHHHHHHHHHHHHHHHHHHHHhCCCcEeecCCccceEEEEcCCcccchhchHHHHH
Confidence 1111111111268999999999999999999999999999977999988888899998754 456667777
Q ss_pred HcCceeeee
Q 001989 494 KIEMNLRVV 502 (985)
Q Consensus 494 ~~GI~~~~~ 502 (985)
+.|+.++..
T Consensus 395 ~~gw~v~~~ 403 (460)
T COG0076 395 RRGWQVPAQ 403 (460)
T ss_pred hcCceeecc
Confidence 789987643
|
|
| >PRK11522 putrescine--2-oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=4.9e-17 Score=190.52 Aligned_cols=324 Identities=17% Similarity=0.213 Sum_probs=206.1
Q ss_pred cccccccccCCCccccccccccccccccCCCCchhhhhhHHHHHHHHHHHHHHHhCCCc-cceecCcHHHHHHHHHHHHH
Q 001989 591 MIPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFDS-FSLQPNAGAAGEYAGLMVIR 669 (985)
Q Consensus 591 ~~~lG~~t~~~~~~~~~~~~~~~~f~~~~p~~p~e~~~G~~~~~~e~~~~la~l~G~~~-~~~~~~sGa~a~~a~l~air 669 (985)
...+|+|++.+..+...+......+..+.+ . +...++.+.|++++..+. ..++.+||++|++++++.+|
T Consensus 93 ~~~lGH~~p~v~~Ai~~ql~~l~~~~~~~~-~---------~~~~~lae~L~~~~p~~~~~v~f~~SGsEAve~AlklAr 162 (459)
T PRK11522 93 IFNVGHRNPVVVSAVQNQLAKQPLHSQELL-D---------PLRAMLAKTLAALTPGKLKYSFFCNSGTESVEAALKLAK 162 (459)
T ss_pred hhhcCCCCHHHHHHHHHHHhhCcccccccC-C---------HHHHHHHHHHHHhCCCCCCEEEEeCCchHHHHHHHHHHH
Confidence 346888887777665554422222222221 1 224467788888874322 35678999999999999998
Q ss_pred HHHHhcCCCCCCEEEE-cCCCCcccHHHHHHCCcE------------EEEEcCCCCCCCCHHHHHHHHHh---cCCCEEE
Q 001989 670 AYHKARGDHHRNVCII-PVSAHGTNPATAAMCGMK------------IVSVGTDAKGNINIEELRKAAEA---NRDNLST 733 (985)
Q Consensus 670 ~~~~~~g~~~~~~IIv-~~~~Hg~~~~~a~~~G~~------------vv~v~~d~~g~iD~e~L~~~i~~---~~~~t~~ 733 (985)
.|...+ .+.+||. ...+||....+....|-. +..+|. .|.+++++.+++ +.+++++
T Consensus 163 ~~t~~~---gr~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~l~~~l~~~~~~~~~iAa 234 (459)
T PRK11522 163 AYQSPR---GKFTFIATSGAFHGKSLGALSATAKSTFRKPFMPLLPGFRHVPF-----GNIEAMRTALSECKKTGDDVAA 234 (459)
T ss_pred HHhccC---CCcEEEEecCCCCCCcHHHhhhcCCcccccCCCCCCCCCcccCC-----CCHHHHHHHHHHhhccCCcEEE
Confidence 874211 2445665 568999876654432211 222333 378899988863 2356788
Q ss_pred EEEEcC-CCccccccC----HHHHHHHHHHcCCEEEEEccccccccCCCCCCcc--------CCcEEEeCCcccccccCC
Q 001989 734 LMVTYP-STHGVYEEG----IDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYI--------GADVCHLNLHKTFCIPHG 800 (985)
Q Consensus 734 Vvv~~p-n~~G~i~~d----i~eI~~la~~~galliVD~a~~~~~~~l~~pg~~--------g~Di~~~s~hK~l~~p~g 800 (985)
|+++.. ...|++. + ++++.++|+++|+++|+|++|. |+++.|.+ .+|+++++ |.++
T Consensus 235 vIvEpv~g~~G~~~-pp~~yl~~lr~lc~~~g~llI~DEV~t----G~GRtG~~~a~e~~gv~PDivt~g--K~lg---- 303 (459)
T PRK11522 235 VILEPIQGEGGVIL-PPEGYLTAVRKLCDEFGALLILDEVQT----GMGRTGKMFACEHENVQPDILCLA--KALG---- 303 (459)
T ss_pred EEEecccCCCCCcc-CCHHHHHHHHHHHHHcCCEEEecccee----cCCccchhhhhhccCCCCCEEEec--hhhh----
Confidence 888753 4567776 4 9999999999999999999873 34444432 26988653 7663
Q ss_pred CC-CCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHHHHHHHHHHHHHH
Q 001989 801 GG-GPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNA 879 (985)
Q Consensus 801 ~G-GPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a 879 (985)
+| -|-.+ +++++++...+....+ ...+++.|+++.++++.+.|..+..+++ .++..++.
T Consensus 304 gG~~Piga-v~~~~~i~~~~~~~~~----------------~~~~T~~gnp~~~Aaala~L~~i~~~~l---~~~~~~~g 363 (459)
T PRK11522 304 GGVMPIGA-TIATEEVFSVLFDNPF----------------LHTTTFGGNPLACAAALATINVLLEQNL---PAQAEQKG 363 (459)
T ss_pred CCCcccee-EEEcHHHHHHhccCCc----------------ccCCCCCCCHHHHHHHHHHHHHHhcchH---HHHHHHHH
Confidence 33 26444 4455555433211100 1123456678888888899998877654 45677888
Q ss_pred HHHHHHhhcc---CC-ee--ecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCCCCCCCEEEEeccCCC
Q 001989 880 NYMAKRLEKH---YP-IL--FRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESE 953 (985)
Q Consensus 880 ~~l~~~L~~g---~~-l~--~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~~p~~~~lris~t~~~ 953 (985)
++|+++|++. ++ ++ +.+. + .+ +-+.+.. ......+.+.|.++|+++.... +-.+.+|++|+..+
T Consensus 364 ~~l~~~L~~l~~~~~~~i~~VrG~-G-l~--~giel~~-----~~~~~~i~~~l~~~Gvl~~~~~-~~~~~lr~~Ppl~~ 433 (459)
T PRK11522 364 DYLLDGFRQLAREYPDLVQEARGK-G-ML--MAIEFVD-----NEIGYNFASEMFRQRVLVAGTL-NNAKTIRIEPPLTL 433 (459)
T ss_pred HHHHHHHHHHHHhCCCceeeEEec-e-eE--EEEEecC-----chHHHHHHHHHHHCCeEEEecC-CCCCEEEEECCccC
Confidence 9999888752 32 21 1121 1 12 2233321 1125678899999999975432 12478999999999
Q ss_pred CHHHHHHHHccCChhHHHHhhc
Q 001989 954 SKSWTGIVMLSSPSEKKLHRLK 975 (985)
Q Consensus 954 t~eeId~~~~~~~l~~~~~~~~ 975 (985)
|++|||+ ++++|++++..++
T Consensus 434 t~~~id~--~l~~l~~~l~~~~ 453 (459)
T PRK11522 434 TIEQCEQ--VLKAARKALAAMR 453 (459)
T ss_pred CHHHHHH--HHHHHHHHHHHHH
Confidence 9999999 8899999887655
|
|
| >TIGR01825 gly_Cac_T_rel pyridoxal phosphate-dependent acyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.76 E-value=6.6e-17 Score=186.89 Aligned_cols=296 Identities=16% Similarity=0.164 Sum_probs=193.2
Q ss_pred hhhHHHHHHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEE
Q 001989 627 AQGYQEMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVS 706 (985)
Q Consensus 627 ~~G~~~~~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~ 706 (985)
.+|..++.+++++++++++|.+. .+..++|+++.++++.++ . +++++|++++..|+.+...+...|++++.
T Consensus 73 ~~g~~~l~~~l~~~l~~~~g~~~-~i~~~sG~~a~~~a~~~~---~-----~~gd~vi~~~~~~~~~~~~~~~~g~~~~~ 143 (385)
T TIGR01825 73 IAGTLRLHEELEEKLAKFKKTEA-ALVFQSGFNTNQGVLSAL---L-----RKGDIVLSDELNHASIIDGLRLTKATKKI 143 (385)
T ss_pred ccCCcHHHHHHHHHHHHHhCCCc-EEEECcHHHHHHHHHHHh---C-----CCCCEEEEEccccHHHHHHHHhcCCceEE
Confidence 35667788899999999999764 466677877665443332 1 46788999888888776667778888876
Q ss_pred EcCCCCCCCCHHHHHHHHHhcC-CCEEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCC-C------
Q 001989 707 VGTDAKGNINIEELRKAAEANR-DNLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGL-T------ 777 (985)
Q Consensus 707 v~~d~~g~iD~e~L~~~i~~~~-~~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l-~------ 777 (985)
++ .+|++++++.+.+.. +++++|++.++ |.+|.+. |+++|.++|+++|+++++|+++..+..+. .
T Consensus 144 ~~-----~~d~~~l~~~l~~~~~~~~~~v~~~~v~~~tG~~~-~~~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~ 217 (385)
T TIGR01825 144 YK-----HADMDDLDRVLRENPSYGKKLIVTDGVFSMDGDVA-PLPEIVELAERYGAVTYVDDAHGSGVMGEAGRGTVHH 217 (385)
T ss_pred eC-----CCCHHHHHHHHHhhccCCCeEEEEecCCcCCCCcc-CHHHHHHHHHHhCCEEEEECcccccCcCCCCCccHhh
Confidence 65 368999999887432 36888877765 5689988 89999999999999999999985332110 0
Q ss_pred CCCccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHH
Q 001989 778 SPGYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISY 857 (985)
Q Consensus 778 ~pg~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~ 857 (985)
..-..+.|+++.+++|+|+. +| |+++.++++.+.+.... .....++. . .+....++.
T Consensus 218 ~~~~~~~~i~~~s~sK~~~~------~g-G~~~~~~~~~~~~~~~~-----------~~~~~~~~-~----~~~~~~a~~ 274 (385)
T TIGR01825 218 FGLEDKVDIQVGTLSKAIGV------VG-GYAAGHKELIEYLKNRA-----------RPFLFSTA-Q----PPAVVAALA 274 (385)
T ss_pred cCCCcCCcEEEEeccHHhhc------CC-CEEecCHHHHHHHHHhC-----------ccccccCC-C----CHHHHHHHH
Confidence 01124578889999999843 33 77877766554432110 00000111 1 112222233
Q ss_pred HHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCC
Q 001989 858 TYIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPT 936 (985)
Q Consensus 858 a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~ 936 (985)
+.+..+... .+..++..++++++.+.|++ ++++. .+..+. +.+.+.. ..+..++++.|.++||.+..
T Consensus 275 ~al~~~~~~--~~~~~~~~~~~~~l~~~L~~~g~~~~--~~~~~~---~~~~~~~-----~~~~~~~~~~L~~~gi~v~~ 342 (385)
T TIGR01825 275 AAVDELQRS--PELMERLWDNTRFFKAGLGKLGYDTG--GSETPI---TPVVIGD-----EKAAQEFSRRLFDEGIFAQS 342 (385)
T ss_pred HHHHHHhcC--HHHHHHHHHHHHHHHHHHHHcCCCCC--CCCCCE---EEEEECC-----HHHHHHHHHHHHHCCcEEcc
Confidence 444433221 23445566788999999976 55542 222222 2222220 12357899999999998754
Q ss_pred CCCCC----CCEEEEeccCCCCHHHHHHHHccCChhHHHHhh
Q 001989 937 MSWPV----PGTLMIEPTESESKSWTGIVMLSSPSEKKLHRL 974 (985)
Q Consensus 937 ~~~p~----~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~ 974 (985)
..+|. .+.+|++++..+++|||++ +++.++++++++
T Consensus 343 ~~~~~~~~~~~~iRi~~~~~~~~e~i~~--~~~~l~~~~~~~ 382 (385)
T TIGR01825 343 IVFPTVPRGTARIRNIPTAEHTKDDLDQ--ALDAYEKVGKEL 382 (385)
T ss_pred cCCCCCCCCCceEEEEEcCCCCHHHHHH--HHHHHHHHHHHh
Confidence 33331 2689999999999999999 788898887654
|
This model represents an enzyme subfamily related to three known enzymes; it appears closest to glycine C-acteyltransferase, shows no overlap with it in species distribution, and may share that function. The three closely related enzymes are glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase), 5-aminolevulinic acid synthase, and 8-amino-7-oxononanoate synthase. All transfer the R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from coenzyme A to an amino acid (Gly, Gly, Ala, respectively), with release of CO2 for the latter two reactions. |
| >PLN03227 serine palmitoyltransferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=7.1e-17 Score=186.52 Aligned_cols=298 Identities=12% Similarity=0.109 Sum_probs=186.5
Q ss_pred HHHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcCCCC
Q 001989 633 MFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAK 712 (985)
Q Consensus 633 ~~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~d~~ 712 (985)
.+.++|+.+++++|.+. .+.+++|..++.+++.++. +++|+||+++..|++....+...++++++++++
T Consensus 44 ~~~~LE~~lA~~~g~e~-al~~~sG~~a~~~~i~~l~--------~~GD~Vl~~~~~h~s~~~~~~l~~~~~~~~~~~-- 112 (392)
T PLN03227 44 AHLELEQCMAEFLGTES-AILYSDGASTTSSTVAAFA--------KRGDLLVVDRGVNEALLVGVSLSRANVRWFRHN-- 112 (392)
T ss_pred HHHHHHHHHHHHhCCCc-EEEecCcHHHHHHHHHHhC--------CCCCEEEEeccccHHHHHHHHHcCCeEEEeCCC--
Confidence 46689999999999875 4556677666645444431 478999999998887766667788888888874
Q ss_pred CCCCHHHHHHHHHhc-----------CCCEEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCC-
Q 001989 713 GNINIEELRKAAEAN-----------RDNLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSP- 779 (985)
Q Consensus 713 g~iD~e~L~~~i~~~-----------~~~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~p- 779 (985)
|++++++.++.. ++++++|+++.+ |..|.+. |+++|.++|+++|+++++|++|..+. +...
T Consensus 113 ---d~~~l~~~~~~i~~~~~a~~~~~~~~t~~vi~E~v~~~~G~i~-~l~~i~~l~~~~g~~livDe~~~~g~--~g~~G 186 (392)
T PLN03227 113 ---DMKDLRRVLEQVRAQDVALKRKPTDQRRFLVVEGLYKNTGTLA-PLKELVALKEEFHYRLILDESFSFGT--LGKSG 186 (392)
T ss_pred ---CHHHHHHHHHHhhhhccccccccCCCcEEEEEcCCcCCCCccc-CHHHHHHHHHHcCCEEEEECcccccc--cCCCC
Confidence 566666544321 136888888887 5688887 89999999999999999999985332 2211
Q ss_pred ----------CccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhh
Q 001989 780 ----------GYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGS 849 (985)
Q Consensus 780 ----------g~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~ 849 (985)
...++|+++++++|.+ ||.+|++++++++.+.+.....+ ..++. +. +
T Consensus 187 ~g~~~~~g~~p~~~~Div~~slsk~~-------g~~gg~v~~~~~~~~~~~~~~~~-----------~~~~~-~~----~ 243 (392)
T PLN03227 187 RGSLEHAGLKPMVHAEIVTFSLENAF-------GSVGGMTVGSEEVVDHQRLSGSG-----------YCFSA-SA----P 243 (392)
T ss_pred CcHHHHcCCCCCCCceEEEeechhhh-------hccCcEEecCHHHHHHHHHhCcC-----------ccccC-CC----C
Confidence 1236799999988876 36667887787655433111000 00111 10 1
Q ss_pred hHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCC------CceeeEEEEEecCccccC----CC
Q 001989 850 ALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVN------GTVAHEFIVDLRGLKNTA----GI 918 (985)
Q Consensus 850 ~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~------~~~~~~~iv~~~~~~~~~----g~ 918 (985)
+..+.++.+.+..+.. ..+..++..+++++++++|++ ++..+..... ....+.+.+.+...+... ..
T Consensus 244 p~~~~aa~~al~~~~~--~~~~~~~l~~~~~~l~~~L~~~~~~~~~~~rg~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~ 321 (392)
T PLN03227 244 PFLAKADATATAGELA--GPQLLNRLHDSIANLYSTLTNSSHPYALKLRNRLVITSDPISPIIYLRLSDQEATRRTDETL 321 (392)
T ss_pred HHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHHhcCCccccccccccccCCCCCCCEEEEEeCCHHHhhhhhhhh
Confidence 2222233333332211 134556778899999999975 3321100000 001112334432100000 00
Q ss_pred CHHHHHHHHHHCCCccCCC------CCC-C-CCEEEEeccCCCCHHHHHHHHccCChhHHHHhh
Q 001989 919 EPEDVAKRLMDYGFHGPTM------SWP-V-PGTLMIEPTESESKSWTGIVMLSSPSEKKLHRL 974 (985)
Q Consensus 919 ~~~~v~~~L~~~Gi~~~~~------~~p-~-~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~ 974 (985)
...++.++|.++|+.+... ..| + +..+|++++..+|+||||+ ++++|+++++.+
T Consensus 322 ~~~~~~~~~~~~Gi~~~~~~~~~~~~~~~~P~~~iR~~~~~~~t~eei~~--~~~~l~~~~~~~ 383 (392)
T PLN03227 322 ILDQIAHHSLSEGVAVVSTGGHVKKFLQLVPPPCLRVVANASHTREDIDK--LLTVLGEAVEAI 383 (392)
T ss_pred HHHHHHHHHHHCCCEEEecccccCCcCCCCCCceEEEEecCCCCHHHHHH--HHHHHHHHHHHH
Confidence 1248889999999987421 111 1 4789999999999999999 789999988765
|
|
| >PRK05958 8-amino-7-oxononanoate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=99.76 E-value=5.4e-17 Score=187.43 Aligned_cols=290 Identities=14% Similarity=0.110 Sum_probs=186.6
Q ss_pred hHHHHHHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEc
Q 001989 629 GYQEMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVG 708 (985)
Q Consensus 629 G~~~~~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~ 708 (985)
|......++++++++++|.+ ..+++++|+++.++++ +.+ .+++++|++++..|+.+...+...|++++.++
T Consensus 81 g~~~~~~~l~~~la~~~~~~-~~i~~~~g~~~~~~~l---~~~-----~~~gd~V~~~~~~~~~~~~~~~~~g~~~~~~~ 151 (385)
T PRK05958 81 GNSPAHEALEEELAEWFGAE-RALLFSSGYAANLAVL---TAL-----AGKGDLIVSDKLNHASLIDGARLSRARVRRYP 151 (385)
T ss_pred CCcHHHHHHHHHHHHHhCCC-cEEEECcHHHHHHHHH---HHh-----CCCCCEEEEeCccCHHHHHHHHhcCCceEEeC
Confidence 44455778999999999864 3466677777554333 322 14678999999988888777888899998888
Q ss_pred CCCCCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCC-C-------CC
Q 001989 709 TDAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGL-T-------SP 779 (985)
Q Consensus 709 ~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l-~-------~p 779 (985)
. .|+++++++++..+++++++++.++ |.+|... ++++|+++|+++|+++++|++|..+..+. . ..
T Consensus 152 ~-----~d~~~l~~~i~~~~~~~~lvi~~~~~~~~G~~~-~l~~i~~ia~~~~~~li~De~~~~g~~~~~g~~~~~~~~~ 225 (385)
T PRK05958 152 H-----NDVDALEALLAKWRAGRALIVTESVFSMDGDLA-PLAELVALARRHGAWLLVDEAHGTGVLGPQGRGLAAEAGL 225 (385)
T ss_pred C-----CCHHHHHHHHHhccCCCeEEEEEecccCCCCcC-CHHHHHHHHHHhCCEEEEECcccccccCCCCCchHHhhCC
Confidence 6 3899999999742224666666666 4589887 89999999999999999999985432110 0 01
Q ss_pred CccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHH
Q 001989 780 GYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTY 859 (985)
Q Consensus 780 g~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~ 859 (985)
.....++++.++||+|+. +| |+++.++++.+.+.... +....+. .. ++..++++++.
T Consensus 226 ~~~~~~i~~~s~sK~~~~------~G-g~~~~~~~~~~~~~~~~-----------~~~~~~~-~~----~~~~~aa~~aa 282 (385)
T PRK05958 226 AGEPDVILVGTLGKALGS------SG-AAVLGSETLIDYLINRA-----------RPFIFTT-AL----PPAQAAAARAA 282 (385)
T ss_pred CCCCceEEEEechhhccc------CC-cEEEcCHHHHHHHHHhC-----------ccceecC-CC----CHHHHHHHHHH
Confidence 112234778899999842 33 67777766554331100 0000000 01 12223334445
Q ss_pred HHHhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCC
Q 001989 860 IAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMS 938 (985)
Q Consensus 860 l~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~ 938 (985)
+..+... .+..++..++++++.+.|++ ++++. .+.+.. +.+.++ .+.+..++.++|.++||.+....
T Consensus 283 l~~~~~~--~~~~~~~~~~~~~l~~~L~~~~~~~~--~~~~~~---~~~~~~-----~~~~~~~~~~~l~~~gI~v~~~~ 350 (385)
T PRK05958 283 LRILRRE--PERRERLAALIARLRAGLRALGFQLM--DSQSAI---QPLIVG-----DNERALALAAALQEQGFWVGAIR 350 (385)
T ss_pred HHHHhcC--HHHHHHHHHHHHHHHHHHHHcCCCcC--CCCCCE---EEEEeC-----CHHHHHHHHHHHHHCCceEeccc
Confidence 5544322 34556778888999999986 45432 222222 334443 12346789999999999986432
Q ss_pred CC----CCCEEEEeccCCCCHHHHHHHHccCChhHH
Q 001989 939 WP----VPGTLMIEPTESESKSWTGIVMLSSPSEKK 970 (985)
Q Consensus 939 ~p----~~~~lris~t~~~t~eeId~~~~~~~l~~~ 970 (985)
.+ ..+.+||+++.+++++|+|+ +++.|+++
T Consensus 351 ~~~~~~~~~~lRis~~~~~~~~~i~~--~l~~l~~~ 384 (385)
T PRK05958 351 PPTVPAGTSRLRITLTAAHTEADIDR--LLEALAEA 384 (385)
T ss_pred CCCCCCCCceEEEEecCCCCHHHHHH--HHHHHHhc
Confidence 22 13689999999999999999 66776654
|
|
| >cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I) | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.5e-16 Score=181.20 Aligned_cols=277 Identities=18% Similarity=0.191 Sum_probs=187.8
Q ss_pred hhhHHHHHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEE
Q 001989 206 AQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVV 285 (985)
Q Consensus 206 sqg~l~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~ 285 (985)
..|......++++.+++++|++. ..++.+||+++.+++.++. ++||+|++++..|+++...++ ..|++++.
T Consensus 41 ~~~~~~~~~~l~~~la~~~~~~~--~iv~~sg~~a~~~~~~~~~---~~gd~Vl~~~~~~~~~~~~~~----~~g~~~~~ 111 (349)
T cd06454 41 ISGTSDLHEELEEELAEFHGKEA--ALVFSSGYAANDGVLSTLA---GKGDLIISDSLNHASIIDGIR----LSGAKKRI 111 (349)
T ss_pred ecCCchHHHHHHHHHHHHhCCCC--EEEeccHHHHHHHHHHHhc---CCCCEEEEehhhhHHHHHHHH----HcCCceEE
Confidence 34556677788899999999874 4566677777666554442 388999999999999887764 35777776
Q ss_pred e---Cchhhhc-cC-----CCEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCC---------CCCc
Q 001989 286 S---DLKDIDY-KS-----GDVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILK---------PPGE 346 (985)
Q Consensus 286 v---~~~~l~~-l~-----~~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~---------~~~~ 346 (985)
+ +.+++++ +. +++++|++.++ |.+|.+.|+++|+++||++|+++++|. ..+.|.+. ....
T Consensus 112 ~~~~~~~~le~~i~~~~~~~~~~~v~~~~~~~~tG~~~~~~~i~~~~~~~~~~livD~-a~~~g~~~~~~~~~~~~~~~~ 190 (349)
T cd06454 112 FKHNDMEDLEKLLREARRPYGKKLIVTEGVYSMDGDIAPLPELVDLAKKYGAILFVDE-AHSVGVYGPHGRGVEEFGGLT 190 (349)
T ss_pred ecCCCHHHHHHHHHHhhccCCCeEEEEeccccCCCCccCHHHHHHHHHHcCCEEEEEc-cccccccCCCCCChhhhcccc
Confidence 5 3355665 43 35677777776 789999999999999999999999942 34444331 1245
Q ss_pred ccceEEEecC-ccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhH
Q 001989 347 LGADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQA 425 (985)
Q Consensus 347 ~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~ 425 (985)
.++|++++|. |.|+. |+ |+++.++++.+.+.... ..|. ..++.+ ...
T Consensus 191 ~~~~i~~~s~sK~~~~------~g-G~i~~~~~~~~~~~~~~----------~~~~------------~~~~~~---~~~ 238 (349)
T cd06454 191 DDVDIIMGTLGKAFGA------VG-GYIAGSKELIDYLRSYA----------RGFI------------FSTSLP---PAV 238 (349)
T ss_pred ccCcEEEeechhhhcc------cC-CEEECCHHHHHHHHHhc----------hhhh------------ccCCCC---HHH
Confidence 7899999998 77653 23 67777877765541100 0010 001111 122
Q ss_pred HHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCCCcceEEEecC-C--HHHHHHHHHHcCceeeee
Q 001989 426 LLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDTVKVKCA-D--AHAIASAAYKIEMNLRVV 502 (985)
Q Consensus 426 l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~~~~~~~~~~~-~--~~~v~~~L~~~GI~~~~~ 502 (985)
..++.+++ ..+.. .+++.++..++.+++.+.|.++| +++...+....+.+..+ . +.++.+.|.++||.+...
T Consensus 239 ~~a~~~~l--~~~~~--~~~~~~~~~~~~~~l~~~l~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gI~~~~~ 313 (349)
T cd06454 239 AAAALAAL--EVLQG--GPERRERLQENVRYLRRGLKELG-FPVGGSPSHIIPPLIGDDPAKAVAFSDALLERGIYVQAI 313 (349)
T ss_pred HHHHHHHH--HHHhc--CHHHHHHHHHHHHHHHHHHHhcC-CcccCCCCCcEEEEeCCChHHHHHHHHHHHhCCceEEEe
Confidence 33344443 33322 46678889999999999999987 77654322112223233 2 788999999999987542
Q ss_pred -------cCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 503 -------DSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 503 -------~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
..+.+|++++.++|++|+++++++|++
T Consensus 314 ~~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~ 347 (349)
T cd06454 314 RYPTVPRGTARLRISLSAAHTKEDIDRLLEALKE 347 (349)
T ss_pred cCCccCCCCCeEEEEEeCCCCHHHHHHHHHHHHH
Confidence 136899999999999999999999974
|
The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life. |
| >PRK12381 bifunctional succinylornithine transaminase/acetylornithine transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.2e-16 Score=185.94 Aligned_cols=327 Identities=14% Similarity=0.122 Sum_probs=202.9
Q ss_pred ccccccccCCCccccccccccccccccCCCCchhhhhhHHHHHHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHH
Q 001989 592 IPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAY 671 (985)
Q Consensus 592 ~~lG~~t~~~~~~~~~~~~~~~~f~~~~p~~p~e~~~G~~~~~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~ 671 (985)
.+||++++.+..+...+......... .+.. +...++.+.++++++.+ ..++.+||++|++++++++|.|
T Consensus 51 ~~lGh~~p~v~~A~~~~~~~~~~~~~--~~~~--------~~~~~la~~l~~~~~~~-~v~~~~sGseA~e~Alk~ar~~ 119 (406)
T PRK12381 51 NALGHAHPALREALNEQASKFWHTGN--GYTN--------EPVLRLAKKLIDATFAD-RVFFCNSGAEANEAALKLARKY 119 (406)
T ss_pred ccCCCCCHHHHHHHHHHHhhcccccC--ccCC--------HHHHHHHHHHHhhCCCC-eEEEcCCcHHHHHHHHHHHHHH
Confidence 46888877666554444321111111 1111 22457888999988765 4577899999999999999887
Q ss_pred HHhcCCCCCCEEEE-cCCCCcccHHHHHHCCc------------EEEEEcCCCCCCCCHHHHHHHHHhcCCCEEEEEEEc
Q 001989 672 HKARGDHHRNVCII-PVSAHGTNPATAAMCGM------------KIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTY 738 (985)
Q Consensus 672 ~~~~g~~~~~~IIv-~~~~Hg~~~~~a~~~G~------------~vv~v~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~ 738 (985)
...++..++.+|+. ...+||.........|. .+..+|. .|++++++.++ +++++|+++-
T Consensus 120 ~~~~~~~~r~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~l~~~l~---~~~aaviiEP 191 (406)
T PRK12381 120 AHDRYGSHKSGIVAFKNAFHGRTLFTVSAGGQPKYSQDFAPLPPDIRHAAY-----NDLNSASALID---DQTCAVIVEP 191 (406)
T ss_pred HhhcCCCCCCeEEEECCCcCCcchhHHhhcCCcccccCCCCCCCCeeEeCC-----CCHHHHHHhcc---CCeeEEEEeC
Confidence 53333224556665 66789987655443331 1233443 48999999997 7888888863
Q ss_pred CCC-ccccc---cCHHHHHHHHHHcCCEEEEEccccccccCCCCC---Cc--cCCcEEEeCCcccccccCCCCCCceEEE
Q 001989 739 PST-HGVYE---EGIDEICKIIHDNGGQVYMDGANMNAQVGLTSP---GY--IGADVCHLNLHKTFCIPHGGGGPGMGPI 809 (985)
Q Consensus 739 pn~-~G~i~---~di~eI~~la~~~galliVD~a~~~~~~~l~~p---g~--~g~Di~~~s~hK~l~~p~g~GGPg~G~i 809 (985)
.+. .|++. ..+++|.++|+++|+++++|++|. +++-.... .. ..+|++++ .|.++ ||..+|.+
T Consensus 192 v~~~gg~~~~~~~~l~~l~~l~~~~~~llI~DEv~t-G~gr~G~~~~~~~~~v~pDi~t~--sK~l~-----gG~~ig~~ 263 (406)
T PRK12381 192 IQGEGGVIPADKAFLQGLRELCDRHNALLIFDEVQT-GVGRTGELYAYMHYGVTPDVLTT--AKALG-----GGFPIGAM 263 (406)
T ss_pred CcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEcchhh-CCCCCcchhhhHhhCCCCCEEEe--hhhhh-----CCCceEEE
Confidence 243 45442 368999999999999999999873 33211111 01 23677644 47774 45678888
Q ss_pred EEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc-
Q 001989 810 GVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK- 888 (985)
Q Consensus 810 ~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~- 888 (985)
++++++.+.+..... + +++.++++.++++.+.|..+..+. ..++..++.+++.++|++
T Consensus 264 ~~~~~~~~~~~~~~~---------------~---~t~~~~pl~~aaa~a~l~~l~~~~---~~~~~~~~~~~l~~~L~~l 322 (406)
T PRK12381 264 LTTEKCASVMTVGTH---------------G---TTYGGNPLASAVAGKVLELINTPE---MLNGVKQRHDWFVERLNTI 322 (406)
T ss_pred EEcHHHHhhcCCCCC---------------C---CCCCCCHHHHHHHHHHHHHHhhcc---HHHHHHHHHHHHHHHHHHH
Confidence 888877765532110 0 112234455555666666664433 445667788889988876
Q ss_pred c--CCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCCCCCCCEEEEeccCCCCHHHHHHHHccCC
Q 001989 889 H--YPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKSWTGIVMLSSP 966 (985)
Q Consensus 889 g--~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~~p~~~~lris~t~~~t~eeId~~~~~~~ 966 (985)
. +.+.........+ +.+.+.. ........+.+.|.++|+.+.... ++.+|++|+..+|++|||+ +++.
T Consensus 323 ~~~~~~~~~vrg~Gl~--~~~~l~~---~~~~~~~~~~~~l~~~Gv~v~~~g---~~~lRl~p~~~~t~~~i~~--~~~~ 392 (406)
T PRK12381 323 NARYGLFSEIRGLGLL--IGCVLNA---EYAGKAKQISQEAAKAGVMVLIAG---PNVVRFAPALNISEEEITT--GLDR 392 (406)
T ss_pred HhhCCCEEEEecCeEE--EEEEecC---chhhHHHHHHHHHHHCCcEEeeCC---CCEEEEeCCccCCHHHHHH--HHHH
Confidence 2 2221111001111 2233320 000135678899999999975332 3699999999999999999 8899
Q ss_pred hhHHHHhhcc
Q 001989 967 SEKKLHRLKM 976 (985)
Q Consensus 967 l~~~~~~~~~ 976 (985)
|++++.++..
T Consensus 393 l~~~l~~~~~ 402 (406)
T PRK12381 393 FARACERFVS 402 (406)
T ss_pred HHHHHHHHHh
Confidence 9999987755
|
|
| >cd06452 SepCysS Sep-tRNA:Cys-tRNA synthase | Back alignment and domain information |
|---|
Probab=99.76 E-value=5.3e-16 Score=177.83 Aligned_cols=279 Identities=17% Similarity=0.151 Sum_probs=186.6
Q ss_pred HHHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc--
Q 001989 211 ESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL-- 288 (985)
Q Consensus 211 ~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~-- 288 (985)
..+.++++.+|+++|+ .++.+++|+|.++.+++.++ . ++||+|++++..|.+....+ +..|++++.++.
T Consensus 44 ~~~~~l~~~la~~~g~--~~i~~~~g~t~al~~~l~~~-~--~~gd~Vl~~~~~~~~~~~~~----~~~g~~~~~v~~~~ 114 (361)
T cd06452 44 PPIKDFHHDLAEFLGM--DEARVTPGAREGKFAVMHSL-C--EKGDWVVVDGLAHYTSYVAA----ERAGLNVREVPNTG 114 (361)
T ss_pred chHHHHHHHHHHHcCC--ceEEEeCCHHHHHHHHHHHh-c--CCCCEEEEcCCcchHHHHHH----HhcCCEEEEEecCC
Confidence 4577889999999998 45888999998877766654 2 38899999999998887654 346888887754
Q ss_pred --------hhhhc-cC-------CCEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCC-CCCCcccce
Q 001989 289 --------KDIDY-KS-------GDVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTIL-KPPGELGAD 350 (985)
Q Consensus 289 --------~~l~~-l~-------~~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l-~~~~~~GaD 350 (985)
+++++ ++ +++++|++++| |.+|.+.|+++|+++||++|++++|| ..++.|.+ ....++|+|
T Consensus 115 ~~~~~~d~~~l~~~l~~~~~~~~~~~~lv~l~~p~n~tG~~~~~~~i~~~~~~~~~~vivD-~a~~~g~~~~~~~~~~~d 193 (361)
T cd06452 115 HPEYHITPEGYAEVIEEVKDEFGKPPALALLTHVDGNYGNLHDAKKIAKVCHEYGVPLLLN-GAYTVGRMPVSGKELGAD 193 (361)
T ss_pred CCCcccCHHHHHHHHHHHhhccCCCceEEEEECCCCCCeeeccHHHHHHHHHHcCCeEEEE-CCcccCCcCCCHHHcCCC
Confidence 23443 43 37899999998 56999999999999999999999995 34555544 234578999
Q ss_pred EEEecC-ccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHH
Q 001989 351 IVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLAN 429 (985)
Q Consensus 351 i~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~ 429 (985)
++++|+ |+|+.| +++|++++++++++++-... ..|.+. + .....+|++. .+..++
T Consensus 194 ~~~~s~~K~l~~~-----~~~G~l~~~~~~~~~l~~~~----------~~~~~~-----~-~~~~~~~~~~---~~~~~~ 249 (361)
T cd06452 194 FIVGSGHKSMAAS-----APIGVLATTEEWADIVFRTS----------QMFKIK-----E-VELLGCTLRG---APLVTL 249 (361)
T ss_pred EEEecCCccccCC-----CCeEEEEECHHHHHHHhccc----------cccccc-----e-eeeeccccCc---hHHHHH
Confidence 999998 777533 35799999988877652110 001110 0 0001122222 233344
Q ss_pred HHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcC-CCeEEcCC--CCcceEEEecCC-----------HHHHHHHHHHc
Q 001989 430 MAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKL-GTVEVQGL--PFFDTVKVKCAD-----------AHAIASAAYKI 495 (985)
Q Consensus 430 ~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~-g~~~~~~~--~~~~~~~~~~~~-----------~~~v~~~L~~~ 495 (985)
.+++ .+. .+.++ ...+..+++++++++|+++ | ++++.. ...+.+.++.+. +.++.+.|.++
T Consensus 250 ~~al--~~~-~~~~~-~~~~~~~~~~~l~~~L~~l~g-~~v~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~ 324 (361)
T cd06452 250 MASF--PHV-KERVK-RWDEEVEKARWFVAELEKIEG-IKQLGEKPKNHDLMFFETPSFDEIAKKHKRRGYFLYSELKKR 324 (361)
T ss_pred HHHH--HHH-HHHHH-HHHHHHHHHHHHHHHHhcCCC-eEEECCCCCCCceEEEEcCCcchhhhhccccchhHHHHHHHc
Confidence 4443 111 12233 3344456779999999999 6 998732 112223333321 34699999999
Q ss_pred Cceeeee-cCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 496 EMNLRVV-DSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 496 GI~~~~~-~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
||.+... ....+|++. ...|+||+++++++|++
T Consensus 325 gI~~~~~~~~~~~ri~~-~g~~~e~~~~l~~al~~ 358 (361)
T cd06452 325 GIHGIKPGLTRYFKLST-YGLTWEQVEYVVDAFKE 358 (361)
T ss_pred CceEEcCCCceEEEEEe-cCCCHHHHHHHHHHHHH
Confidence 9985322 235677777 34799999999999973
|
This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface. |
| >PRK13034 serine hydroxymethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.7e-16 Score=184.77 Aligned_cols=283 Identities=13% Similarity=0.109 Sum_probs=178.5
Q ss_pred hHhhhHHHHHHHHHH----HHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhH-HHHHHHh-h-
Q 001989 204 EIAQGRLESLLNFQT----MIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQT-IDICITR-A- 276 (985)
Q Consensus 204 e~sqg~l~~i~e~q~----~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~-~~~~~~~-a- 276 (985)
+...| .+.+.++++ .+++++|.+.+.+ .+++||++..+++.++ . ++||+|++++..|.+. ...++-. .
T Consensus 64 r~~~G-~~~~~~lE~~~~~~la~l~g~~~alv-~~~SG~~A~~~~l~al-~--~~GD~Vl~~~~~~~~~~~~g~~~~~~~ 138 (416)
T PRK13034 64 RYYGG-CEFVDEVEALAIERAKQLFGCDYANV-QPHSGSQANGAVYLAL-L--KPGDTILGMSLSHGGHLTHGAKVSLSG 138 (416)
T ss_pred cccCC-ChHHHHHHHHHHHHHHHHhCCCceEE-ecCCcHHHHHHHHHHh-c--CCCCEEEEcCccceeeeecCCcceecc
Confidence 34445 366777777 9999999886322 3578898888888776 3 3899999999999873 2222100 0
Q ss_pred -----cCCCeEE--EEeCchhhhc-cC-CCEeEEEEEcCCCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCCCC---
Q 001989 277 -----DGFDIKV--VVSDLKDIDY-KS-GDVCGVLVQYPGTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKPP--- 344 (985)
Q Consensus 277 -----~~~gi~v--~~v~~~~l~~-l~-~~t~~V~v~~pn~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~~~--- 344 (985)
..++++. ..+|++++++ +. .++++|++.++ .+|...|+++|.++||++|++++|| +.+++|+....
T Consensus 139 ~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~klVi~~~~-~~g~~~dl~~l~~la~~~g~~livD-~Aha~G~~~~g~~~ 216 (416)
T PRK13034 139 KWYNAVQYGVDRLTGLIDYDEVEELAKEHKPKLIIAGFS-AYPRELDFARFREIADEVGALLMVD-MAHIAGLVAAGEHP 216 (416)
T ss_pred ceeeeEEcccccccCCcCHHHHHHHHhhcCCeEEEECCC-ccccccCHHHHHHHHHHcCCEEEEe-CcccccCcccCCCC
Confidence 0111111 1145677776 53 35777776554 4688889999999999999999994 34555544221
Q ss_pred Cc-ccceEEEecC-ccccccCCCCCCcEEEEEEchh-hHhcCCC-ceeeeeecCCCCcceeeecccccccccccccCCCc
Q 001989 345 GE-LGADIVVGSA-QRFGVPMGYGGPHAAFLATSQE-YKRMMPG-RIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNI 420 (985)
Q Consensus 345 ~~-~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~-~~~~lp~-~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni 420 (985)
+. .++|++++++ |+|++| ..|+++++++ +..++.. +..| ++ ++++
T Consensus 217 ~~~~~~Di~~~s~~K~l~g~------~GG~v~~~~~~~~~~~~~~~~~~--------------~~----------~~~~- 265 (416)
T PRK13034 217 NPFPHAHVVTTTTHKTLRGP------RGGMILTNDEEIAKKINSAVFPG--------------LQ----------GGPL- 265 (416)
T ss_pred CCCCCceEEEEeCcccCCCC------CCeEEEECcHHHHHHHHhhcCCc--------------cc----------CCcc-
Confidence 11 2599999998 777544 2366666543 3222210 0000 00 0011
Q ss_pred cchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCC-CCcce--EEEecCC--HHHHHHHHHHc
Q 001989 421 CTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGL-PFFDT--VKVKCAD--AHAIASAAYKI 495 (985)
Q Consensus 421 ~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~-~~~~~--~~~~~~~--~~~v~~~L~~~ 495 (985)
+....+...++ ...+ ..+..+..++.++++++|+++|++.| +++... ...+. +.+..++ ...+.++|.++
T Consensus 266 --~~~~aa~~~al-~~~~-~~~~~~~~~~l~~~a~~l~~~L~~~G-~~~~~~~~~t~i~~v~~~~~~~~~~~~~~~L~~~ 340 (416)
T PRK13034 266 --MHVIAAKAVAF-GEAL-QPEFKTYAKQVIANAQALAEVLKERG-YDLVSGGTDNHLLLVDLRPKGLSGKDAEQALERA 340 (416)
T ss_pred --HHHHHHHHHHH-HHHh-ChhHHHHHHHHHHHHHHHHHHHHHcC-CEeccCCCCCcEEEEEcCCCCCCHHHHHHHHHhC
Confidence 11122221111 1222 23445678999999999999999997 988642 22233 4444444 57777899999
Q ss_pred Cceeeee----------cCCeEEEEecc----CCCHHHHHHHHHHHhC
Q 001989 496 EMNLRVV----------DSNTVTASFDE----TTTLEDVDKLFIVFAG 529 (985)
Q Consensus 496 GI~~~~~----------~~~~lris~t~----~~t~edId~li~aL~~ 529 (985)
||++... .+..+|+++++ .+|++|||+++++|..
T Consensus 341 GI~v~~~~~p~~~~~p~~~~~lR~~~~~~t~~~~~~~di~~l~~~l~~ 388 (416)
T PRK13034 341 GITVNKNTVPGDTESPFVTSGIRIGTPAGTTRGFGEAEFREIANWILD 388 (416)
T ss_pred CcEEeccCCCCCCcCCCCCCeeEeCcHHHHhCCCCHHHHHHHHHHHHH
Confidence 9988641 24679999999 6679999999999974
|
|
| >PRK15029 arginine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=4.6e-17 Score=196.91 Aligned_cols=279 Identities=12% Similarity=0.049 Sum_probs=195.0
Q ss_pred HHHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc--
Q 001989 211 ESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL-- 288 (985)
Q Consensus 211 ~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~-- 288 (985)
..|.|+|+..|+++|++.+++ +++|+|+++.+++++.. ++||+|++++++|.|+...+. ..|++.+++++
T Consensus 205 G~I~eAq~~aA~~fgA~~t~F-lvNGST~gn~a~i~a~~---~~gd~Vlv~RN~HKSv~~al~----L~ga~Pvyl~P~~ 276 (755)
T PRK15029 205 GAFGESEKYAARVFGADRSWS-VVVGTSGSNRTIMQACM---TDNDVVVVDRNCHKSIEQGLI----LTGAKPVYMVPSR 276 (755)
T ss_pred cHHHHHHHHHHHHhCCCcEEE-EeCChhHHHHHHHHHhc---CCCCEEEeecccHHHHHHHHH----HcCCeEEEecccc
Confidence 568899999999999998765 67888888888888753 389999999999999999874 35888888743
Q ss_pred ----------------hhhhc-c--CCCEe--------EEEEEcCCCCeeeccHHHHHHHHHhCCcEEEEE----ecCcc
Q 001989 289 ----------------KDIDY-K--SGDVC--------GVLVQYPGTEGEVLDYGDFIKNAHANGVKVVMA----TDLLA 337 (985)
Q Consensus 289 ----------------~~l~~-l--~~~t~--------~V~v~~pn~~G~v~di~~I~~~a~~~galliV~----a~~~~ 337 (985)
+++++ + .++++ +|++|+|||+|++.|+++|+++||++|++++|| +++..
T Consensus 277 ~~~Gi~~~i~~~~~~~e~i~~~l~~~p~~k~~~~~~~~avvlt~PTY~Gv~~di~~I~~~~h~~~~~llvDEAhGah~~F 356 (755)
T PRK15029 277 NRYGIIGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNCTYDGVCYNAKEAQDLLEKTSDRLHFDEAWYGYARF 356 (755)
T ss_pred cccCCccCCCccccCHHHHHHHHHhCchhhhccccCceEEEEECCCCcceeeCHHHHHHHHHhcCCeEEEECcccccccc
Confidence 23433 2 34455 899999999999999999999999999999993 33211
Q ss_pred ccCCC--CCC-----c-ccce-EEEecC-ccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccc
Q 001989 338 LTILK--PPG-----E-LGAD-IVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTR 407 (985)
Q Consensus 338 lg~l~--~~~-----~-~GaD-i~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tr 407 (985)
...+. .+- . .||| +++.|. |+|+.- + ++++++++.. .+.+ |
T Consensus 357 ~~~~p~~sa~~~~~~~~~Gad~~vvqStHKtL~al-T----QaS~LHv~~~-~~~i---------d-------------- 407 (755)
T PRK15029 357 NPIYADHYAMRGEPGDHNGPTVFATHSTHKLLNAL-S----QASYIHVREG-RGAI---------N-------------- 407 (755)
T ss_pred CccccccccccccccccCCCceEEEEchhhcccch-h----hhhhheeCCC-cccc---------C--------------
Confidence 12221 111 3 7999 899999 666542 2 3467777543 0011 0
Q ss_pred cccccccccCCCccchhHHHHHHHHHHH--HHhCc-chHHHHHHHHHHHHHHHHHHHhcCCC------------------
Q 001989 408 EQHIRRDKATSNICTAQALLANMAAMYA--VYHGP-EGLKTIAQRVHGLAGTFALGLKKLGT------------------ 466 (985)
Q Consensus 408 e~~irre~atsni~t~~~l~a~~aa~~l--~~~g~-~Gl~~i~~~~~~~a~~l~~~L~~~g~------------------ 466 (985)
+.|...+-.-..|+++.|.++|++-. .++.. .| +++.++..+.+..++++|.++.+
T Consensus 408 --~~r~~~~l~~~qSTSPSY~LmASLD~ar~~m~~~~G-~~l~~~~i~~~~~~r~~l~~~~~~~~~~~~~~~~~~~~~~v 484 (755)
T PRK15029 408 --FSRFNQAYMMHATTSPLYAICASNDVAVSMMDGNSG-LSLTQEVIDEAVDFRQAMARLYKEFTADGSWFFKPWNKEVV 484 (755)
T ss_pred --HHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhhhh-HHHHHHHHHHHHHHHHHHHhccccccccccccccccCcccc
Confidence 00011111223356888899999832 23322 34 45677778888899999977642
Q ss_pred ------------------------eEEcCC--C------------Ccce--EEEecCC----HH---------HHHHHHH
Q 001989 467 ------------------------VEVQGL--P------------FFDT--VKVKCAD----AH---------AIASAAY 493 (985)
Q Consensus 467 ------------------------~~~~~~--~------------~~~~--~~~~~~~----~~---------~v~~~L~ 493 (985)
+.++.+ . .++. ++|.+++ +. ++.+.|.
T Consensus 485 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~lDp~Klti~~~~~g~sG~~~~~gip~~~l~~~L~ 564 (755)
T PRK15029 485 TDPQTGKTYDFADAPTKLLTTVQDCWVMHPGESWHGFKDLPDNWSMLDPIKVSILAPGMGEDGELEETGVPAALVTAWLG 564 (755)
T ss_pred ccccccccccccccchhhhccccceeeecccccccCcccccccccccCCceEEEEcCCCCCCCcccccCCcHHHHHHHHH
Confidence 222211 0 1232 4555432 33 8999998
Q ss_pred HcCceeeeecCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 494 KIEMNLRVVDSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 494 ~~GI~~~~~~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
++||.++......+++-++..+|++++++|+++|.+
T Consensus 565 ~~gI~~E~~~~~~vL~l~s~g~t~~~~~~L~~aL~~ 600 (755)
T PRK15029 565 RHGIVPTRTTDFQIMFLFSMGVTRGKWGTLVNTLCS 600 (755)
T ss_pred HcCCEEEecCCCeEEEEeCCCCCHHHHHHHHHHHHH
Confidence 899999988888999999999999999999999974
|
|
| >PRK03715 argD acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.2e-16 Score=184.45 Aligned_cols=287 Identities=17% Similarity=0.201 Sum_probs=183.7
Q ss_pred HHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEE-cCCCCcccHHHHHHCCcEEE---EEcC
Q 001989 634 FNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCII-PVSAHGTNPATAAMCGMKIV---SVGT 709 (985)
Q Consensus 634 ~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv-~~~~Hg~~~~~a~~~G~~vv---~v~~ 709 (985)
..++.+++++..+.+. .++.+||++|+++++.++|.|... +..++++||+ ...+||.........|.... ..|.
T Consensus 80 ~~~la~~l~~~~~~~~-v~f~~SGseA~e~Aik~ar~~~~~-~~~~r~~ii~~~~~yHG~t~~~~~~s~~~~~~~~~~~~ 157 (395)
T PRK03715 80 MAKLAGLLTQHSCFDK-VFFANSGAEANEGAIKLARKWGRK-HKNGAYEIITFDHSFHGRTLATMSASGKPGWDTIFAPQ 157 (395)
T ss_pred HHHHHHHHhhccCCCE-EEEeCCcHHHHHHHHHHHHHHhhc-cCCCCcEEEEECCCcCCChHHHHhhcCCcccccCCCCC
Confidence 3466677776655543 567899999999999999876421 1123455665 66889987766554443211 1111
Q ss_pred CCC----CCCCHHHHHHHHHhcCCCEEEEEEEcCC-CccccccC----HHHHHHHHHHcCCEEEEEccccccccCCCCCC
Q 001989 710 DAK----GNINIEELRKAAEANRDNLSTLMVTYPS-THGVYEEG----IDEICKIIHDNGGQVYMDGANMNAQVGLTSPG 780 (985)
Q Consensus 710 d~~----g~iD~e~L~~~i~~~~~~t~~Vvv~~pn-~~G~i~~d----i~eI~~la~~~galliVD~a~~~~~~~l~~pg 780 (985)
..+ ...|+++++++++ +++++|+++... ..|++. + +++|.++|+++|+++|+|++|. + +++.|
T Consensus 158 ~~~~~~~~~~d~~~l~~~l~---~~~aavi~Epv~~~gG~~~-~~~~~l~~l~~l~~~~~~llI~DEv~t-G---~GRtG 229 (395)
T PRK03715 158 VPGFPKAELNDIASVEKLIT---DKTVAVMLEPVQGEGGVIP-ATREFMQQLRALTKQHGLLLIVDEVQT-G---CGRTG 229 (395)
T ss_pred CCCceeeCCchHHHHHHHcC---CCceEEEEeCCcCCCCCcc-CCHHHHHHHHHHHHHcCCEEEEecccc-C---CCCCc
Confidence 111 1258999999986 688899888653 467665 4 9999999999999999999874 3 44444
Q ss_pred cc--------CCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHH
Q 001989 781 YI--------GADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALI 852 (985)
Q Consensus 781 ~~--------g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~ 852 (985)
.+ .+|+++++ |.++ +|-| +|.+++++++..+.++. +.+++.|+++.
T Consensus 230 ~~~a~~~~gv~PDi~t~g--K~lg----~G~p-~~av~~~~~i~~~~~~~-------------------~~~T~~g~pl~ 283 (395)
T PRK03715 230 TLFAYELSGIEPDIMTLG--KGIG----GGVP-LAALLAKAEVAVFEAGD-------------------QGGTYNGNPLM 283 (395)
T ss_pred chhhHhhcCCCCceeeeh--hhhh----CCcc-eEEEEEccccccccCCC-------------------cCCCCCCCHHH
Confidence 32 36887764 8774 3435 55556677765332221 11233456677
Q ss_pred HHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhcc---CCee-ecCCCCceeeEEEEEecCccccCCCCHHHHHHHHH
Q 001989 853 LPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKH---YPIL-FRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLM 928 (985)
Q Consensus 853 ~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~g---~~l~-~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~ 928 (985)
++++.+.|..+..+++ .++..++.++|+++|++. +.+. ..+. + .+ +.+.+. ......+.+.+.
T Consensus 284 ~aaala~L~~l~~~~l---~~~~~~~g~~l~~~L~~l~~~~~i~~vrG~-G-lm--~~i~l~------~~~~~~~~~~~~ 350 (395)
T PRK03715 284 TAVGVAVISQLLAPGF---LEGVRARGEYLKEKLLELSEERGLEGERGE-G-LL--RALLLG------KDIGPQIVEKAR 350 (395)
T ss_pred HHHHHHHHHHHHhccH---HHHHHHHHHHHHHHHHHHhhcCCcCeEEcc-e-eE--EEEEec------CchHHHHHHHHH
Confidence 7888888888865544 456778888999888752 2221 1121 1 11 233332 112344554454
Q ss_pred HC---CCccCCCCCCCCCEEEEeccCCCCHHHHHHHHccCChhHHHHhh
Q 001989 929 DY---GFHGPTMSWPVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRL 974 (985)
Q Consensus 929 ~~---Gi~~~~~~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~ 974 (985)
+. |+++.... .++||++|+..+|++|||+ ++++|++++..+
T Consensus 351 ~~~~~Gi~~~~~~---~~~lR~~p~l~~t~~ei~~--~~~~l~~~l~~~ 394 (395)
T PRK03715 351 DMQPDGLLLNAPR---PNLLRFMPALNVTTEEIDQ--MIAMLRSVLDKL 394 (395)
T ss_pred hccCCCEEEeecC---CCEEEEeCCcccCHHHHHH--HHHHHHHHHHhh
Confidence 44 98875433 3689999999999999999 889998888754
|
|
| >TIGR01366 serC_3 phosphoserine aminotransferase, putative | Back alignment and domain information |
|---|
Probab=99.75 E-value=4.9e-17 Score=185.76 Aligned_cols=304 Identities=12% Similarity=0.035 Sum_probs=186.8
Q ss_pred HHHHHHHHHHHHHHHhCCCc--cc-eecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccH-HHHHHC--CcE
Q 001989 630 YQEMFNNLGEWLCTITGFDS--FS-LQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNP-ATAAMC--GMK 703 (985)
Q Consensus 630 ~~~~~~e~~~~la~l~G~~~--~~-~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~-~~a~~~--G~~ 703 (985)
..+.++++++.+++++|.+. .. |..+||+.++++++..+ . .+ +.+++....|+... ..++.. +.+
T Consensus 39 f~~~~~~~r~~l~~l~~~~~~~~v~f~~gs~T~a~~~~~~~l---~-----~~-~~l~i~~G~~~~~~~~~a~~~~~~~~ 109 (361)
T TIGR01366 39 VKNLVGRVREGLAELFSLPDGYEVILGNGGATAFWDAATFGL---I-----EK-KSLHLSFGEFSSKFAKAVKLAPWLGE 109 (361)
T ss_pred HHHHHHHHHHHHHHHhCCCCCceEEEECCchhHHHHHHHHhc---c-----cc-cccEEecCHHHHHHHHHHHhhhccCC
Confidence 45778899999999999853 22 34567887776554432 1 12 23344444444322 223331 226
Q ss_pred EEEEcCCCCCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCcc
Q 001989 704 IVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYI 782 (985)
Q Consensus 704 vv~v~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~ 782 (985)
+..++.+++..++. .++ +++++|.+++. |.+|++. |+++| +|++|++++||++|+++...+ +..
T Consensus 110 ~~~~~~~~~~~~~~-----~~~---~~~~lV~~~h~et~tG~~~-pi~~I---~~~~g~~~iVDavqs~g~~~i-dv~-- 174 (361)
T TIGR01366 110 PIIVTADPGSAPEP-----QAD---PGVDVIAWAHNETSTGVAV-PVRRP---EGSDDALVVIDATSGAGGLPV-DIA-- 174 (361)
T ss_pred ceEEecCCCCCCCC-----ccC---CCCCEEEEcccCCccceec-ccccc---cccCCCeEEEEcCccccCCCC-CHH--
Confidence 77777765544443 233 78999988885 6799999 89888 588999999999997555443 223
Q ss_pred CCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccC-----CCC---CCCCCCCCCCCCCCcchhhhHHHH
Q 001989 783 GADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVST-----GGI---PAPEKSQPLGTIAAAPWGSALILP 854 (985)
Q Consensus 783 g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~-----~~~---~~~~~~~~~~~i~s~~~g~~~~~~ 854 (985)
.+|++++++||+|+.| ||++++++++++.+.+.....+.. .+. .....+..+.++.. . ..+.
T Consensus 175 ~~D~~~~s~~K~lg~~-----~Gl~~~~~s~~~~~~~~~~~~~~~~~p~~~d~~~~~~~~~~~~t~~tp~----i-~~i~ 244 (361)
T TIGR01366 175 ETDVYYFAPQKNFASD-----GGLWLAIMSPAALERIEAIAASGRWVPEFLSLPTAVDNSLKNQTYNTPA----I-ATLA 244 (361)
T ss_pred HCCEEEEEchhhcCCC-----CceEEEEECHHHHhhhhcccCCCCCCchhhhHHHHHhccccCCCCCCch----H-HHHH
Confidence 2899999999998532 378888888876544432111110 000 00001122333221 1 1111
Q ss_pred HHHHHHHHhcHH-HHHHHHHHHHHHHHHHHHHhhc-c-CCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCC
Q 001989 855 ISYTYIAMMGSK-GLTEASKIAILNANYMAKRLEK-H-YPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYG 931 (985)
Q Consensus 855 ~a~a~l~~lg~e-Gl~~~~~~~~~~a~~l~~~L~~-g-~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~G 931 (985)
+..+.++.+..+ |+..+.++..+++++++++|++ + +.+....+........++.++ .+.+..++.+.|.++|
T Consensus 245 ~l~~al~~l~~~gg~e~~~~r~~~l~~~l~~~l~~~~~~~~~~~~~~~~s~~v~~v~~~-----~g~~~~~v~~~L~~~g 319 (361)
T TIGR01366 245 LLAEQIDWMNGNGGLDWAVARTADSSSRLYSWAQERPYATPFVTDPGKRSQVVGTIDFV-----DDIDAATVAKILRANG 319 (361)
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhCCCcccCCCChhhcccceEEEECC-----CccCHHHHHHHHHHCC
Confidence 122344545455 5777778899999999999987 3 333222211111111234443 3678899999999999
Q ss_pred CccCCCCCCC-CCEEEEeccCCCCHHHHHHHHccCChhHHHHhh
Q 001989 932 FHGPTMSWPV-PGTLMIEPTESESKSWTGIVMLSSPSEKKLHRL 974 (985)
Q Consensus 932 i~~~~~~~p~-~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~ 974 (985)
|.+....... .+.+||+...++|.+|||+ +++.|+++++++
T Consensus 320 I~i~~~~~~l~~~~vRis~~~~~t~~di~~--l~~al~~~~~~~ 361 (361)
T TIGR01366 320 IVDTEPYRKLGRNQLRVAMFPAIDPDDVEA--LTECVDWVVERL 361 (361)
T ss_pred CeeccCccccCCCcEEEEcCCCCCHHHHHH--HHHHHHHHHhhC
Confidence 9874321111 3679999999999999999 888898887654
|
This model represents a putative variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in Mycobacterium tuberculosis and related high-GC Gram-positive bacteria. |
| >TIGR01885 Orn_aminotrans ornithine aminotransferase | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.1e-16 Score=183.70 Aligned_cols=296 Identities=15% Similarity=0.192 Sum_probs=189.9
Q ss_pred HHHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhc-CC-CCCCEEEE-cCCCCcccHHHHHHCC--------
Q 001989 633 MFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKAR-GD-HHRNVCII-PVSAHGTNPATAAMCG-------- 701 (985)
Q Consensus 633 ~~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~-g~-~~~~~IIv-~~~~Hg~~~~~a~~~G-------- 701 (985)
...++++++++++|.+ ..++++||++|+++++.++|.+...+ +. +++++|+. ...+||.........|
T Consensus 80 ~~~~l~~~l~~~~~~~-~~~~~~SGs~A~e~ai~~a~~~~~~~~~~~~~~~~i~~~~~~yhg~~~~~~~~~~~~~~~~~~ 158 (401)
T TIGR01885 80 VFGEFAEYVTKLFGYD-KVLPMNTGAEAVETAIKLARKWGYKVKGIPENQAIIVSAKGNFHGRTLGAISMSTDPDSRTNF 158 (401)
T ss_pred HHHHHHHHHHhhcCCC-EEEEeCccHHHHHHHHHHHHHHhhhhcCCCCCCCEEEEECCCcCcccHHHHhCcCCccccccc
Confidence 3567889999999865 45678999999999999888764321 21 13456665 4456887554433322
Q ss_pred ----cEEEEEcCCCCCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCcccccc---CHHHHHHHHHHcCCEEEEEccccccc
Q 001989 702 ----MKIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEE---GIDEICKIIHDNGGQVYMDGANMNAQ 773 (985)
Q Consensus 702 ----~~vv~v~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~---di~eI~~la~~~galliVD~a~~~~~ 773 (985)
..+..+|.+ |+++|+++++++.+++++|+++.+ +..|.+.+ .+++|.++|+++|+++++|++|. ++
T Consensus 159 ~~~~~~~~~~~~~-----d~~~le~~l~~~~~~~~avi~E~v~~~~G~~~~~~~~l~~l~~l~~~~~~lli~DEv~~-g~ 232 (401)
T TIGR01885 159 GPYVPGFKKIPYN-----NLEALEEALEDHGPNVCAFIVEPIQGEAGVVVPDDGYLKKVRELCTKHNVLLIADEIQT-GL 232 (401)
T ss_pred CCCCCCceEeCCC-----CHHHHHHHHHhcCCCEEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhh-CC
Confidence 124445543 899999999755567888888765 46788762 29999999999999999999983 43
Q ss_pred cCCCCC-----CccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchh
Q 001989 774 VGLTSP-----GYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWG 848 (985)
Q Consensus 774 ~~l~~p-----g~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g 848 (985)
+-.+.. ..+.+|+++++ |.++ +|+..+|+++.++++.+.+..... + +++.+
T Consensus 233 g~~G~~~~~~~~~~~~di~~~g--K~l~----~g~~~ig~v~~~~~i~~~~~~~~~---------------~---~t~~~ 288 (401)
T TIGR01885 233 GRTGKLLCVDHENVKPDIVLLG--KALS----GGVYPVSAVLADDDVMLTIKPGEH---------------G---STYGG 288 (401)
T ss_pred CccchhhHHhhcCCCCCEEEee--cccc----CCCCCcEEEEEcHHHHhhccCCCC---------------C---CCCCC
Confidence 311111 12357888764 8774 355568888888777655432110 0 01122
Q ss_pred hhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHH
Q 001989 849 SALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRL 927 (985)
Q Consensus 849 ~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L 927 (985)
++..+.++.+.|..+..+++. ++..+++++++++|++ +.++.........+..+.+..+. .+.+..++.++|
T Consensus 289 ~p~~~~aa~a~L~~i~~~~l~---~~~~~~~~~~~~~L~~l~~~~~~~~~g~g~~~~i~~~~~~----~~~~~~~l~~~l 361 (401)
T TIGR01885 289 NPLACAVAVAALEVLEEEKLA---ENAEKLGEIFRDQLKKLPKPIITEVRGRGLLNAIVIDESK----TGRTAWDLCLKL 361 (401)
T ss_pred CHHHHHHHHHHHHHHHhccHH---HHHHHHHHHHHHHHHhccCCceeEEeecCeeEEEEeccCc----chhHHHHHHHHH
Confidence 344455566777777654444 4566678999999986 33332110001222222232210 012467899999
Q ss_pred HHCCCccCCCCCCCCCEEEEeccCCCCHHHHHHHHccCChhHHH
Q 001989 928 MDYGFHGPTMSWPVPGTLMIEPTESESKSWTGIVMLSSPSEKKL 971 (985)
Q Consensus 928 ~~~Gi~~~~~~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~~ 971 (985)
.++|+.+.... ++.+||+|+..+|++|||+ +++.|++++
T Consensus 362 ~~~Gv~v~~~~---~~~lRi~p~l~~t~~~i~~--~l~~l~~~l 400 (401)
T TIGR01885 362 KEKGLLAKPTH---GNIIRLAPPLVITEEQLDE--GLEIIKKVI 400 (401)
T ss_pred HhCCEEEEecC---CCEEEEeCCccCCHHHHHH--HHHHHHHHh
Confidence 99999875432 4789999999999999999 777777654
|
This model describes the final step in the biosynthesis of ornithine from glutamate via the non-acetylated pathway. Ornithine amino transferase takes L-glutamate 5-semialdehyde and makes it into ornithine, which is used in the urea cycle, as well as in the biosynthesis of arginine. This model includes low-GC bacteria and eukaryotic species. The genes from two species are annotated as putative acetylornithine aminotransferases - one from Porphyromonas gingivalis, and the other from Staphylococcus aureus. After homology searching using BLAST it was determined that these two sequences were most closely related to ornithine aminotransferases. This model's seed includes one characterized hit, from Bacillus subtilis. |
| >PLN02624 ornithine-delta-aminotransferase | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.3e-16 Score=186.22 Aligned_cols=325 Identities=17% Similarity=0.235 Sum_probs=199.2
Q ss_pred ccccccccCCCccccccccccccccccCCCCchhhhhhHHHHHHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHH
Q 001989 592 IPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAY 671 (985)
Q Consensus 592 ~~lG~~t~~~~~~~~~~~~~~~~f~~~~p~~p~e~~~G~~~~~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~ 671 (985)
..+|+|++.+..+...+............. +...++.+.++++++.+. .++.+||++|++++++.+|.|
T Consensus 87 ~~~Gh~~p~v~~ai~~ql~~~~~~~~~~~~----------~~~~~la~~L~~~~~~~~-~~f~~SGseA~e~AlklAr~~ 155 (474)
T PLN02624 87 VNQGHCHPKIIKALTEQAEKLTLSSRAFYN----------DKFPEFAEYLTSMFGYDM-VLPMNTGAEGVETAIKLARKW 155 (474)
T ss_pred ccCCCCCHHHHHHHHHHHHhcCCcccccCC----------HHHHHHHHHHHhhcCCCe-EEEeCChHHHHHHHHHHHHHH
Confidence 347777776665544443222211111111 224478889999998764 466799999999999988876
Q ss_pred HHh-cCCC-CCCEEEE-cCCCCcccHHHHHHCC------------cEEEEEcCCCCCCCCHHHHHHHHHhcCCCEEEEEE
Q 001989 672 HKA-RGDH-HRNVCII-PVSAHGTNPATAAMCG------------MKIVSVGTDAKGNINIEELRKAAEANRDNLSTLMV 736 (985)
Q Consensus 672 ~~~-~g~~-~~~~IIv-~~~~Hg~~~~~a~~~G------------~~vv~v~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv 736 (985)
... +|.. .+.+||. ...+||....+....+ -.+..+|. .|++.|++.++.+.+++++|++
T Consensus 156 ~~~~~g~~~~~~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~l~~~l~~~~~~iaaiii 230 (474)
T PLN02624 156 GYEKKGIPKNEAIIVSCCGCFHGRTLAAISMSCDNEATRGFGPLLPGHLKVDF-----GDLDALEKIFEEDGDRIAAFLF 230 (474)
T ss_pred HHhhcCCCCCCcEEEEECCCcCCCCHHHhhcCCCccccccCCCCCCCceEeCC-----CCHHHHHHHHHhCCCCEEEEEE
Confidence 422 2211 1234554 5678987655543221 11334454 2889999999755567999999
Q ss_pred EcC-CCcccccc-C--HHHHHHHHHHcCCEEEEEccccccccCCCCCC--------ccCCcEEEeCCcccccccCCCCCC
Q 001989 737 TYP-STHGVYEE-G--IDEICKIIHDNGGQVYMDGANMNAQVGLTSPG--------YIGADVCHLNLHKTFCIPHGGGGP 804 (985)
Q Consensus 737 ~~p-n~~G~i~~-d--i~eI~~la~~~galliVD~a~~~~~~~l~~pg--------~~g~Di~~~s~hK~l~~p~g~GGP 804 (985)
+.+ +..|.+.+ + +++|.++|+++|+++|+|++|. +++ +.| ...+|+++++ |.| ++|+.
T Consensus 231 Epv~~~~G~v~p~~~~L~~l~~lc~~~gillI~DEv~t-G~G---rtG~~~a~~~~~i~pDiv~ls--K~l----ggG~~ 300 (474)
T PLN02624 231 EPIQGEAGVVIPPDGYLKAVRELCSKHNVLMIADEIQT-GLA---RTGKMLACDWEEVRPDVVILG--KAL----GGGVI 300 (474)
T ss_pred CCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecccc-CcC---cCcchhhHHhcCCCCCEEEec--ccc----cCCCC
Confidence 876 46787752 2 9999999999999999999984 332 222 2247888763 766 44555
Q ss_pred ceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHH
Q 001989 805 GMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAK 884 (985)
Q Consensus 805 g~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~ 884 (985)
.+|.+++++++...+.... ..+++.++++.++++.+.|..+..+++. ++..++.+++++
T Consensus 301 pigav~~~~~i~~~~~~~~------------------~~~T~~g~pl~~aaa~aaLe~l~~~~l~---~~~~~~~~~l~~ 359 (474)
T PLN02624 301 PVSAVLADKDVMLCIKPGE------------------HGSTFGGNPLASAVAMAALQVVQDEKLA---ERSAKLGQELRD 359 (474)
T ss_pred cceeeeecHHHHhHhccCC------------------cCCCCCCCHHHHHHHHHHHHHHHhchHH---HHHHHHHHHHHH
Confidence 6788887776554332110 0112223455566666777766554443 345566677777
Q ss_pred Hhhcc---CC-ee--ecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCCCCCCCEEEEeccCCCCHHHH
Q 001989 885 RLEKH---YP-IL--FRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKSWT 958 (985)
Q Consensus 885 ~L~~g---~~-l~--~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~~p~~~~lris~t~~~t~eeI 958 (985)
+|++. +. ++ ..+. + .+..+.++.+. .......++++.|.++|+.+.... .+.|||+|+..+|++||
T Consensus 360 ~L~~l~~~~~~~i~~vrg~-G-~~~~i~l~~~~---~~~~~a~~~~~~L~e~GV~v~p~~---~~~lR~~p~l~~t~e~i 431 (474)
T PLN02624 360 QLQKIQKQFPKLIKEVRGR-G-LLNAVVLNSPK---LGPVSAYDVCLKLKERGLLAKPTH---DTIIRLAPPLSISEDEL 431 (474)
T ss_pred HHHHHHHhCCCceEEEEee-E-EEEEEEecCCC---cChHHHHHHHHHHHhCCeEEecCC---CCEEEEECCccCCHHHH
Confidence 77651 22 11 1111 1 22222222110 001235689999999999975432 47899999999999999
Q ss_pred HHHHccCChhHHHHh
Q 001989 959 GIVMLSSPSEKKLHR 973 (985)
Q Consensus 959 d~~~~~~~l~~~~~~ 973 (985)
|+ +++.|++++..
T Consensus 432 d~--~l~~L~~~l~~ 444 (474)
T PLN02624 432 QE--CSKALSDVLEH 444 (474)
T ss_pred HH--HHHHHHHHHHH
Confidence 99 77888887755
|
|
| >TIGR00858 bioF 8-amino-7-oxononanoate synthase | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.4e-16 Score=182.12 Aligned_cols=284 Identities=13% Similarity=0.133 Sum_probs=184.2
Q ss_pred HHHHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcCCC
Q 001989 632 EMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDA 711 (985)
Q Consensus 632 ~~~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~d~ 711 (985)
....++++.+++++|.+. .+..++|+++.+++ ++.+. +++++|++++..|+.+...++..|++++.++.
T Consensus 61 ~~~~~l~~~la~~~~~~~-~i~~~~G~~~~~~~---l~~~~-----~~gd~v~~~~~~~~~~~~~~~~~g~~~~~~~~-- 129 (360)
T TIGR00858 61 PLHEELEEELAEWKGTEA-ALLFSSGYLANVGV---ISALV-----GKGDLILSDALNHASLIDGCRLSGARVRRYRH-- 129 (360)
T ss_pred HHHHHHHHHHHHHhCCCC-EEEECchHHHHHHH---HHHhC-----CCCCEEEEEccccHHHHHHHHhcCCceEEecC--
Confidence 446678899999998654 56667777665433 33321 46789999988888777778888999988874
Q ss_pred CCCCCHHHHHHHHHhcC-CCEEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCCC-CC-------Cc
Q 001989 712 KGNINIEELRKAAEANR-DNLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLT-SP-------GY 781 (985)
Q Consensus 712 ~g~iD~e~L~~~i~~~~-~~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~-~p-------g~ 781 (985)
+|+++|++++++.. +++++|++.++ |.+|.+. |+++|.++|+++|+++++|++|..+..+.. .+ ..
T Consensus 130 ---~d~~~l~~~~~~~~~~~~~~v~~~~~~~~~G~~~-~~~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~ 205 (360)
T TIGR00858 130 ---NDVEHLERLLEKNRGERRKLIVTDGVFSMDGDIA-PLPQLVALAERYGAWLMVDDAHGTGVLGEDGRGTLEHFGLKP 205 (360)
T ss_pred ---CCHHHHHHHHHHcccCCCeEEEEeCCccCCCCCc-CHHHHHHHHHHcCcEEEEECcccccCcCCCCCchHHhcCCCc
Confidence 58999999997432 35788888777 4689887 899999999999999999999853321110 00 11
Q ss_pred cCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHH
Q 001989 782 IGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIA 861 (985)
Q Consensus 782 ~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~ 861 (985)
.+.|+++.|++|+|+. +| |+++.++++.+.+.... ....... .. .+..++++.+++.
T Consensus 206 ~~~~i~i~s~sK~~~~------~g-G~~~~~~~~~~~~~~~~-----------~~~~~~~-~~----~~~~~~a~~~al~ 262 (360)
T TIGR00858 206 EPVDIQVGTLSKALGS------YG-AYVAGSQALIDYLINRA-----------RTLIFST-AL----PPAVAAAALAALE 262 (360)
T ss_pred cCCcEEEEechhhhhc------cC-cEEEcCHHHHHHHHHhC-----------ccceecC-CC----CHHHHHHHHHHHH
Confidence 3578999999999853 33 78887776554431110 0000000 01 1111222233343
Q ss_pred HhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCCC-
Q 001989 862 MMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSW- 939 (985)
Q Consensus 862 ~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~~- 939 (985)
.+.. ..+..++..++++++.+.|++ ++.+. .+.+. .+.+.++. +.+..++.++|.++||.+.....
T Consensus 263 ~~~~--~~~~~~~~~~~~~~l~~~L~~~~~~~~--~~~~~---~~~~~~~~-----~~~~~~~~~~l~~~gI~v~~~~~~ 330 (360)
T TIGR00858 263 LIQE--EPWRREKLLALIARLRAGLEALGFTLM--PSCTP---IVPVIIGD-----NASALALAEELQQQGIFVGAIRPP 330 (360)
T ss_pred HHhh--CHHHHHHHHHHHHHHHHHHHHcCCccC--CCCCC---EEEEEeCC-----HHHHHHHHHHHHHCCeeEeeeCCC
Confidence 3321 234556778889999999987 33332 22122 23344431 23467899999999999854221
Q ss_pred --C-CCCEEEEeccCCCCHHHHHHHHccCCh
Q 001989 940 --P-VPGTLMIEPTESESKSWTGIVMLSSPS 967 (985)
Q Consensus 940 --p-~~~~lris~t~~~t~eeId~~~~~~~l 967 (985)
+ ..+.+||+++.+++++|+++ +++.|
T Consensus 331 ~~~~~~~~iRis~~~~~~~~~i~~--~l~~l 359 (360)
T TIGR00858 331 TVPAGTSRLRLTLSAAHTPGDIDR--LAEAL 359 (360)
T ss_pred CCCCCCceEEEEEcCCCCHHHHHH--HHHhh
Confidence 1 23589999999999999999 54544
|
This model represents 8-amino-7-oxononanoate synthase, the BioF protein of biotin biosynthesis. This model is based on a careful phylogenetic analysis to separate members of this family from 2-amino-3-ketobutyrate and other related pyridoxal phosphate-dependent enzymes. In several species, including Staphylococcus and Coxiella, a candidate 8-amino-7-oxononanoate synthase is confirmed by location in the midst of a biotin biosynthesis operon but scores below the trusted cutoff of this model. |
| >PLN02822 serine palmitoyltransferase | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.9e-16 Score=187.04 Aligned_cols=298 Identities=14% Similarity=0.116 Sum_probs=192.2
Q ss_pred hhHHHHHHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEE
Q 001989 628 QGYQEMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSV 707 (985)
Q Consensus 628 ~G~~~~~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v 707 (985)
-|..+.+.++++.+++++|.+...++. +|..++.++ ++++. +++|.|++...+|++....+.+.|.+++++
T Consensus 150 yg~~~~~~~Lee~La~~~~~~~~i~~s-~G~~a~~sa---i~a~~-----~~gd~Ii~d~~~H~s~~~~~~ls~~~~~~~ 220 (481)
T PLN02822 150 YGTIDVHLDCETKIAKFLGTPDSILYS-YGLSTIFSV---IPAFC-----KKGDIIVADEGVHWGIQNGLYLSRSTIVYF 220 (481)
T ss_pred ccCHHHHHHHHHHHHHHhCCCCEEEEC-CHHHHHHHH---HHHhC-----CCCCEEEEeCCccHHHHHHHHHcCCeEEEE
Confidence 356677889999999999987654444 455455444 33332 467888888888877766778889999999
Q ss_pred cCCCCCCCCHHHHHHHHHhcC------CCE-EEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCC
Q 001989 708 GTDAKGNINIEELRKAAEANR------DNL-STLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSP 779 (985)
Q Consensus 708 ~~d~~g~iD~e~L~~~i~~~~------~~t-~~Vvv~~p-n~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~p 779 (985)
+++ |.++++..+++.+ +++ ++|+++.+ +.+|.+. |+++|.++|+++|+++++|++|..+. ++..
T Consensus 221 ~~n-----d~~~l~~~l~~~~~~~~~~~~~~~~Ivve~i~~~~G~i~-~L~~i~~l~~k~~~~LIvDEa~s~gv--lG~~ 292 (481)
T PLN02822 221 KHN-----DMESLRNTLEKLTAENKRKKKLRRYIVVEAIYQNSGQIA-PLDEIVRLKEKYRFRVLLDESNSFGV--LGKS 292 (481)
T ss_pred CCC-----CHHHHHHHHHHHhhhhcccCCCcEEEEEecCCCCCCCcc-CHHHHHHHHHHcCCEEEEECCccccc--cCCC
Confidence 975 6777777665321 234 67777776 4689998 89999999999999999999996332 2222
Q ss_pred C-----c-----cCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhh
Q 001989 780 G-----Y-----IGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGS 849 (985)
Q Consensus 780 g-----~-----~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~ 849 (985)
| . ..+|++++|++|+|+++ | |++++++++.+.+.....+ .+ .+++. .
T Consensus 293 G~G~~e~~~v~~~~~dii~~s~sKalg~~------G-G~i~g~~~ii~~~~~~~~~------------~~--fsa~l--P 349 (481)
T PLN02822 293 GRGLSEHFGVPIEKIDIITAAMGHALATE------G-GFCTGSARVVDHQRLSSSG------------YV--FSASL--P 349 (481)
T ss_pred CCChHHHcCCCCCCCeEEEecchhhhhhC------C-eEEEcCHHHHHHHHhcCCc------------ee--ecccc--C
Confidence 1 1 14689999999998532 2 7888887766543211000 00 01100 1
Q ss_pred hHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc--cCCeeecCCCCceeeEEEEEecCccccCCCC---HHHHH
Q 001989 850 ALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK--HYPILFRGVNGTVAHEFIVDLRGLKNTAGIE---PEDVA 924 (985)
Q Consensus 850 ~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~--g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~---~~~v~ 924 (985)
+..+.++.++|..+.. ..+..++..+++++++++|++ ++.+..+ ...+. +.+.++........+ ..+++
T Consensus 350 p~~~~Aa~~aL~~l~~--~~~~~~~l~~~~~~l~~~L~~~~g~~~~~~-~~spi---~~l~l~~~~~~~~~~~~~~~~~~ 423 (481)
T PLN02822 350 PYLASAAITAIDVLED--NPSVLAKLKENIALLHKGLSDIPGLSIGSN-TLSPI---VFLHLEKSTGSAKEDLSLLEHIA 423 (481)
T ss_pred HHHHHHHHHHHHHHHh--CHHHHHHHHHHHHHHHHHHHhcCCcccCCC-CCCCE---EEEEeCCCcccccchHHHHHHHH
Confidence 2223334445554432 245666788999999999986 4444211 11222 233333100000001 35789
Q ss_pred HHHH-HCCCccCCCCCC------CCCEEEEeccCCCCHHHHHHHHccCChhHHHHh
Q 001989 925 KRLM-DYGFHGPTMSWP------VPGTLMIEPTESESKSWTGIVMLSSPSEKKLHR 973 (985)
Q Consensus 925 ~~L~-~~Gi~~~~~~~p------~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~ 973 (985)
++|. ++||.+....+| .+..+|++++..+|++||++ +++.|++++..
T Consensus 424 ~~Ll~e~GV~v~~~~~~~~~~~~~~~~lRi~is~~~t~edI~~--~~~~l~~~~~~ 477 (481)
T PLN02822 424 DRMLKEDSVLVVVSKRSTLDKCRLPVGIRLFVSAGHTESDILK--ASESLKRVAAS 477 (481)
T ss_pred HHHHhcCCEEEEeeCCCCcCCCCCCCcEEEEECCCCCHHHHHH--HHHHHHHHHHH
Confidence 9987 779987643222 23579999999999999999 88889888765
|
|
| >PRK08114 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.7e-16 Score=179.60 Aligned_cols=211 Identities=14% Similarity=0.124 Sum_probs=161.6
Q ss_pred HHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc---hhh
Q 001989 215 NFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL---KDI 291 (985)
Q Consensus 215 e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~---~~l 291 (985)
.+++.+|+|.|.+. +.++++|++++.++++++ + ++||+||+++..|..+...++.+++.+|+++.+++. +++
T Consensus 66 ~le~~la~LEg~~~--a~~~~SGmaAi~~~~~~l-l--~~GD~Vv~~~~~Yg~t~~l~~~~l~~~Gi~v~~vd~~d~~~l 140 (395)
T PRK08114 66 SLQEAMCELEGGAG--CALYPCGAAAVANAILAF-V--EQGDHVLMTGTAYEPTQDFCSKILSKLGVTTTWFDPLIGADI 140 (395)
T ss_pred HHHHHHHHHhCCCe--EEEEhHHHHHHHHHHHHH-c--CCCCEEEEeCCCcHHHHHHHHHHHHhcCcEEEEECCCCHHHH
Confidence 46789999999875 778899999999888765 3 389999999999999998887777789999999875 456
Q ss_pred hc-cCCCEeEEEEEcC-CCCeeeccHHHHHHHHHhCC--cEEEEEecCccccCCCCCCcccceEEEecC-ccccccCCCC
Q 001989 292 DY-KSGDVCGVLVQYP-GTEGEVLDYGDFIKNAHANG--VKVVMATDLLALTILKPPGELGADIVVGSA-QRFGVPMGYG 366 (985)
Q Consensus 292 ~~-l~~~t~~V~v~~p-n~~G~v~di~~I~~~a~~~g--alliV~a~~~~lg~l~~~~~~GaDi~v~s~-k~lg~P~~~G 366 (985)
++ ++++|++|++++| |++|.+.||++|+++||++| ++++|| +.++.+.+.+|.+|||||++.|+ |+|++|-.
T Consensus 141 ~~~l~~~TrlV~~EtpsNp~~~v~DI~~Ia~ia~~~g~g~~lvVD-nT~a~p~~~~pl~~GaDivv~S~tKyl~Ghsd-- 217 (395)
T PRK08114 141 AKLIQPNTKVVFLESPGSITMEVHDVPAIVAAVRSVNPDAVIMID-NTWAAGVLFKALDFGIDISIQAGTKYLVGHSD-- 217 (395)
T ss_pred HHhcCCCceEEEEECCCCCCCEeecHHHHHHHHHHhCCCCEEEEE-CCCccccccCHHHcCCcEEEEcCcccccCCCc--
Confidence 66 8889999999997 89999999999999999985 999994 56777888899999999999999 77765422
Q ss_pred CCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcchHHHH
Q 001989 367 GPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTI 446 (985)
Q Consensus 367 GP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i 446 (985)
-.+|+++.++++.+.+- ..++..|. .. ++. ..|+...|-+-|.-+
T Consensus 218 -v~~G~v~~~~~~~~~l~-------------------------~~~~~~G~--~~--~p~-----~a~l~~rgl~TL~lR 262 (395)
T PRK08114 218 -AMIGTAVANARCWEQLR-------------------------ENSYLMGQ--MV--DAD-----TAYMTSRGLRTLGVR 262 (395)
T ss_pred -ceeEEEEcCHHHHHHHH-------------------------HHHHhccC--CC--CHH-----HHHHHHcCCCcHHHH
Confidence 24577777765433220 00011111 00 111 124566677777788
Q ss_pred HHHHHHHHHHHHHHHhcCCCeE
Q 001989 447 AQRVHGLAGTFALGLKKLGTVE 468 (985)
Q Consensus 447 ~~~~~~~a~~l~~~L~~~g~~~ 468 (985)
.++..++|..+++.|++...++
T Consensus 263 ~~~~~~na~~va~~L~~hp~V~ 284 (395)
T PRK08114 263 LRQHEESSLKVAEWLAEHPEVA 284 (395)
T ss_pred HHHHHHHHHHHHHHHHcCCCEe
Confidence 8899999999999999885454
|
|
| >PRK05957 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.7e-16 Score=182.01 Aligned_cols=302 Identities=15% Similarity=0.114 Sum_probs=190.2
Q ss_pred hhhHHHHHHHHHHHHHHHhCCC---ccceecCcHH-HHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCc
Q 001989 627 AQGYQEMFNNLGEWLCTITGFD---SFSLQPNAGA-AGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGM 702 (985)
Q Consensus 627 ~~G~~~~~~e~~~~la~l~G~~---~~~~~~~sGa-~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~ 702 (985)
.+|..++.+.+++++++.+|.+ ...+..++|+ ++...+ ++.+. .++|+|+++++.|..+....+..|+
T Consensus 64 ~~G~~~lr~~~~~~l~~~~g~~~~~~~~i~~t~G~~~~l~~~---~~~~~-----~~gd~Vlv~~P~y~~~~~~~~~~g~ 135 (389)
T PRK05957 64 VQGIPPLLEAITQKLQQDNGIELNNEQAIVVTAGSNMAFMNA---ILAIT-----DPGDEIILNTPYYFNHEMAITMAGC 135 (389)
T ss_pred CCCCHHHHHHHHHHHHHHhCCCCCCCCeEEEeCChHHHHHHH---HHHhc-----CCCCEEEEeCCCCcCHHHHHHhcCC
Confidence 4687888889999999999974 3345555554 444322 32221 3678999998878777777788999
Q ss_pred EEEEEcCCCCCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCcccccc--CHHHHHHHHHHcCCEEEEEccccccc-cC--C
Q 001989 703 KIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEE--GIDEICKIIHDNGGQVYMDGANMNAQ-VG--L 776 (985)
Q Consensus 703 ~vv~v~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~--di~eI~~la~~~galliVD~a~~~~~-~~--l 776 (985)
+++.+|.+.++.+|+++|+++++ +++++|++++| |++|.+.+ ++++|+++|+++|+++++|+++..-. .. .
T Consensus 136 ~~~~v~~~~~~~~d~~~l~~~i~---~~~klv~~~~p~NPtG~~~~~~~~~~i~~~a~~~~~~li~De~y~~~~~~~~~~ 212 (389)
T PRK05957 136 QPILVPTDDNYQLQPEAIEQAIT---PKTRAIVTISPNNPTGVVYPEALLRAVNQICAEHGIYHISDEAYEYFTYDGVKH 212 (389)
T ss_pred EEEEeecCCCCCcCHHHHHHhcC---cCceEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEeccchhccCCCCCc
Confidence 99999998778899999999997 78999999998 47998872 38999999999999999999863111 10 0
Q ss_pred CC----CCccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHH
Q 001989 777 TS----PGYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALI 852 (985)
Q Consensus 777 ~~----pg~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~ 852 (985)
.. +....--|++.|+.|.|+.| |.++|++++++++.+.+.... .+...+.+...+.
T Consensus 213 ~~~~~~~~~~~~~i~~~S~SK~~g~~----GlRiG~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~q~-- 272 (389)
T PRK05957 213 FSPGSIPGSGNHTISLYSLSKAYGFA----SWRIGYMVIPIHLLEAIKKIQ--------------DTILICPPVVSQY-- 272 (389)
T ss_pred cChhhCCCccCcEEEEecchhhccCc----cceeEEEecCHHHHHHHHHHH--------------hhcccCCCcHHHH--
Confidence 01 11112236778888988543 567999999877665543210 0001111111111
Q ss_pred HHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhccCCe-eecCCCCceeeEEEEEecCccccCCCCHHHHHHHHH-HC
Q 001989 853 LPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPI-LFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLM-DY 930 (985)
Q Consensus 853 ~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~g~~l-~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~-~~ 930 (985)
++..+|. -+.+-+++..++..++++++.+.|++...+ .+..+.+.++ +.++++ .+.+..+++++|. ++
T Consensus 273 --~~~~~l~-~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~gg~~--~~~~~~-----~~~~~~~~~~~l~~~~ 342 (389)
T PRK05957 273 --AALGALQ-VGKSYCQQHLPEIAQVRQILLKSLGQLQDRCTLHPANGAFY--CFLKVN-----TDLNDFELVKQLIREY 342 (389)
T ss_pred --HHHHHHh-CChHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCCCeeEE--EEEeCC-----CCCChHHHHHHHHHHC
Confidence 1112222 122234555556677788888888752121 1212222222 335554 2567889999987 57
Q ss_pred CCccCCC-CCC--CCCEEEEeccCCCCHHHHHHHHccCChhHHHH
Q 001989 931 GFHGPTM-SWP--VPGTLMIEPTESESKSWTGIVMLSSPSEKKLH 972 (985)
Q Consensus 931 Gi~~~~~-~~p--~~~~lris~t~~~t~eeId~~~~~~~l~~~~~ 972 (985)
||.+... .|. ..+++||++... +++++++ .++.|.+.++
T Consensus 343 gv~v~pg~~f~~~~~~~iRis~~~~-~~~~l~~--~~~~l~~~~~ 384 (389)
T PRK05957 343 RVAVIPGTTFGMKNGCYLRIAYGAL-QKATAKE--GIERLVQGLK 384 (389)
T ss_pred CEEEccchhhCCCCCCEEEEEEecC-CHHHHHH--HHHHHHHHHH
Confidence 9986532 222 246899998653 5666666 4455555544
|
|
| >PRK01278 argD acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=4e-16 Score=180.72 Aligned_cols=325 Identities=16% Similarity=0.132 Sum_probs=196.8
Q ss_pred ccccccccCCCccccccccccccccccCCCCchhhhhhHHHHHHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHH
Q 001989 592 IPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAY 671 (985)
Q Consensus 592 ~~lG~~t~~~~~~~~~~~~~~~~f~~~~p~~p~e~~~G~~~~~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~ 671 (985)
.+||++++.+..+...+......+.+.+ . .+...+++++++++++.+. .++.+||++|++++++++|.|
T Consensus 43 ~~lGh~~p~v~~a~~~~~~~~~~~~~~~--~--------~~~~~~la~~l~~~~~~~~-v~~~~sGseA~~~al~~ar~~ 111 (389)
T PRK01278 43 NSLGHAHPHLVEALKEQAEKLWHVSNLY--R--------IPEQERLAERLVENSFADK-VFFTNSGAEAVECAIKTARRY 111 (389)
T ss_pred ccCCCCCHHHHHHHHHHHHhcCcccccc--C--------ChHHHHHHHHHHhhCCCCE-EEEcCCcHHHHHHHHHHHHHH
Confidence 4678877666655444432111111111 1 1234578888999886553 466789999999999999887
Q ss_pred HHhcCCCCCCEEEE-cCCCCcccHHHHHHCCcEEEE---EcCCCCC----CCCHHHHHHHHHhcCCCEEEEEEEcCC-Cc
Q 001989 672 HKARGDHHRNVCII-PVSAHGTNPATAAMCGMKIVS---VGTDAKG----NINIEELRKAAEANRDNLSTLMVTYPS-TH 742 (985)
Q Consensus 672 ~~~~g~~~~~~IIv-~~~~Hg~~~~~a~~~G~~vv~---v~~d~~g----~iD~e~L~~~i~~~~~~t~~Vvv~~pn-~~ 742 (985)
...+|...+++||+ ...+||.........+..... .|..++. ..|+++++++++ +++++|+++.++ ..
T Consensus 112 ~~~~G~~~r~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~---~~~~avivep~~~~~ 188 (389)
T PRK01278 112 HYGKGHPERYRIITFEGAFHGRTLATIAAGGQEKYLEGFGPLVPGFDQVPFGDIEALKAAIT---PNTAAILIEPIQGEG 188 (389)
T ss_pred HHhcCCCCCCEEEEECCCcCCCcHHHHhccCChhhcccCCCCCCCceEeCCCCHHHHHHhhC---CCeEEEEEecccCCC
Confidence 55555334457776 556888776655433322111 0111111 158999999997 689999998654 45
Q ss_pred cccc---cCHHHHHHHHHHcCCEEEEEccccccccCCCC--C-C--ccCCcEEEeCCcccccccCCCCCCceEEEEEccc
Q 001989 743 GVYE---EGIDEICKIIHDNGGQVYMDGANMNAQVGLTS--P-G--YIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKH 814 (985)
Q Consensus 743 G~i~---~di~eI~~la~~~galliVD~a~~~~~~~l~~--p-g--~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~ 814 (985)
|.+. .++++|.++|+++|+++|+|+++. +++-... + . ...+|++++ .|.++ +|..+|.++++++
T Consensus 189 G~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~-g~g~~g~~~~~~~~~~~pdi~t~--sK~l~-----~G~~ig~~~~~~~ 260 (389)
T PRK01278 189 GIRPAPDEFLKGLRQLCDENGLLLIFDEVQC-GMGRTGKLFAHEWAGVTPDIMAV--AKGIG-----GGFPLGACLATEE 260 (389)
T ss_pred CCcCCCHHHHHHHHHHHHHcCCEEEEecccc-CCCcCCcceeecccCCCCCEEEE--ehhcc-----CCcceEEEEEcHH
Confidence 6332 369999999999999999999884 2221111 0 0 123577654 48774 4567888888877
Q ss_pred ccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhcc---CC
Q 001989 815 LAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKH---YP 891 (985)
Q Consensus 815 l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~g---~~ 891 (985)
+.+.+..... .. ++.+++..++++.+.|..+..+++. ++..++.++++++|++. ..
T Consensus 261 ~~~~~~~~~~--------------~~----t~~~~~~~~aaa~a~l~~l~~~~~~---~~~~~~~~~l~~~l~~l~~~~~ 319 (389)
T PRK01278 261 AAKGMTPGTH--------------GS----TYGGNPLAMAVGNAVLDVILAPGFL---DNVQRMGLYLKQKLEGLVDRFP 319 (389)
T ss_pred HHhccCCCCC--------------CC----CCCccHHHHHHHHHHHHHHhhhHHH---HHHHHHHHHHHHHHHHHHhhCC
Confidence 6655432100 01 1122445555566667666444332 34556667777777641 21
Q ss_pred -eeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCCCCCCCEEEEeccCCCCHHHHHHHHccCChhHH
Q 001989 892 -ILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKSWTGIVMLSSPSEKK 970 (985)
Q Consensus 892 -l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~ 970 (985)
+.........+ +.+.+. .+..+++++|.++|+.+.... .+.+||+|+...+++||++ +++.|+++
T Consensus 320 ~~~~~v~g~G~~--~~i~~~-------~~~~~~~~~l~~~GV~~~p~~---~~~lR~~p~~~~~~~~i~~--~l~~l~~~ 385 (389)
T PRK01278 320 DVIEEVRGKGLL--LGLKCV-------VPNRDLVQALRDEGLLTVGAG---DNVVRLLPPLIITEEEIDE--ALERLERA 385 (389)
T ss_pred CceeeEecccEE--EEEEEe-------cCHHHHHHHHHHCCeEEeecC---CCEEEEeCCcccCHHHHHH--HHHHHHHH
Confidence 21100001111 223332 246789999999999864322 3789999999999999999 77888887
Q ss_pred HHh
Q 001989 971 LHR 973 (985)
Q Consensus 971 ~~~ 973 (985)
+.+
T Consensus 386 l~~ 388 (389)
T PRK01278 386 AES 388 (389)
T ss_pred HHh
Confidence 764
|
|
| >PRK06225 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.3e-16 Score=182.09 Aligned_cols=297 Identities=14% Similarity=0.169 Sum_probs=187.4
Q ss_pred HHHHHHHHHHHhCCCcccee-cCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcCCC-
Q 001989 634 FNNLGEWLCTITGFDSFSLQ-PNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDA- 711 (985)
Q Consensus 634 ~~e~~~~la~l~G~~~~~~~-~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~d~- 711 (985)
..++++++++++|.+..++. .+++++|...+ ++.+. .++++|+++++.|..+...++..|++++.++++.
T Consensus 68 ~~~lr~~ia~~l~~~~~~v~~~~g~t~al~~~---~~~~~-----~~gd~vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~ 139 (380)
T PRK06225 68 FPELRELILKDLGLDDDEALITAGATESLYLV---MRAFL-----SPGDNAVTPDPGYLIIDNFASRFGAEVIEVPIYSE 139 (380)
T ss_pred hHHHHHHHHHhcCCCCCcEEEeCCHHHHHHHH---HHHhc-----CCCCEEEEcCCCCcchHHHHHHhCceEEeeccccc
Confidence 34678899999998775544 44555555333 33321 3678899988877766667788999999998742
Q ss_pred --CCCCCHHHHHHHHHhcCCCEEEEEEEcCC-Cccccc--cCHHHHHHHHHHcCCEEEEEccccccccCCCCCC--ccCC
Q 001989 712 --KGNINIEELRKAAEANRDNLSTLMVTYPS-THGVYE--EGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPG--YIGA 784 (985)
Q Consensus 712 --~g~iD~e~L~~~i~~~~~~t~~Vvv~~pn-~~G~i~--~di~eI~~la~~~galliVD~a~~~~~~~l~~pg--~~g~ 784 (985)
++.+|+++++++++ +++++|++++|+ ++|.+. .++++|+++|+++|+++++|+++..-..+..... ....
T Consensus 140 ~~~~~~d~~~l~~~~~---~~~~~v~l~~p~NptG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~ 216 (380)
T PRK06225 140 ECNYKLTPELVKENMD---ENTRLIYLIDPLNPLGSSYTEEEIKEFAEIARDNDAFLLHDCTYRDFAREHTLAAEYAPEH 216 (380)
T ss_pred cCCccCCHHHHHhhcC---CCceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHCCcEEEEehhHHHHhccCCchhhcCCCC
Confidence 35799999999987 789999999984 689874 2599999999999999999998621000100001 1123
Q ss_pred cEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhc
Q 001989 785 DVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMG 864 (985)
Q Consensus 785 Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg 864 (985)
.+++.+++|+|+.| |.++|++++++++.+.+..... ...+.+ .....++.+.+...
T Consensus 217 ~i~~~s~SK~~g~~----G~RiG~i~~~~~l~~~~~~~~~---------------~~~~~~----~~~~~~a~~~l~~~- 272 (380)
T PRK06225 217 TVTSYSFSKIFGMA----GLRIGAVVATPDLIEVVKSIVI---------------NDLGTN----VIAQEAAIAGLKVK- 272 (380)
T ss_pred EEEEeechhhcCCc----cceeEEEecCHHHHHHHHHHHh---------------cccCCC----HHHHHHHHHHHhcc-
Confidence 56677888998543 5678999998776654422100 011111 11112222333221
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhc--cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCC-C-C
Q 001989 865 SKGLTEASKIAILNANYMAKRLEK--HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMS-W-P 940 (985)
Q Consensus 865 ~eGl~~~~~~~~~~a~~l~~~L~~--g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~-~-p 940 (985)
.+-+++..+...++.+++.+.|++ +..+...++ +..+ +.+.++. .+.+..++++.|.++||.+.... + +
T Consensus 273 ~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~-~g~~--~~~~~~~----~~~~~~~l~~~l~~~gi~v~~g~~~~~ 345 (380)
T PRK06225 273 DEWIDRIRRTTFKNQKLIKEAVDEIEGVFLPVYPS-HGNM--MVIDISE----AGIDPEDLVEYLLERKIFVRQGTYTSK 345 (380)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCcCCccccCCC-CCeE--EEEEccc----ccCCHHHHHHHHHHCCEEEcCCcccCc
Confidence 122233333344556677777775 322221122 2222 3455531 24578899999999999875422 1 1
Q ss_pred --CCCEEEEeccCCCCHHHHHHHHccCChhHHHHhhcc
Q 001989 941 --VPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRLKM 976 (985)
Q Consensus 941 --~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~~~ 976 (985)
..+.+|+++. .++||+++ +++.|+++++.++.
T Consensus 346 ~~~~~~iR~s~~--~~~e~l~~--~~~~l~~~~~~~~~ 379 (380)
T PRK06225 346 RFGDRYIRVSFS--IPREQVEV--FCEEFPDVVETLRT 379 (380)
T ss_pred CCCCceEEEEeC--CCHHHHHH--HHHHHHHHHHHhhc
Confidence 1368999985 47999999 88999999987764
|
|
| >PRK04612 argD acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.8e-16 Score=180.91 Aligned_cols=326 Identities=15% Similarity=0.149 Sum_probs=200.7
Q ss_pred cccccccccCCCccccccccccccccccCCCCchhhhhhHHHHHHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHH
Q 001989 591 MIPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRA 670 (985)
Q Consensus 591 ~~~lG~~t~~~~~~~~~~~~~~~~f~~~~p~~p~e~~~G~~~~~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~ 670 (985)
...||++++.+..+...+........+.+. . +...++.++|+++++.....++.+||++|++++++.+|.
T Consensus 51 ~~~lGh~~p~v~~ai~~q~~~~~~~~~~~~-~---------~~~~~la~~L~~~~~~~~~v~f~~sGseA~e~AlklAr~ 120 (408)
T PRK04612 51 VCGLGHNDPDLVAALTEQAGKLWHTSNVFY-S---------APPLKLAEELVTASRFAEKVFLCNSGTEANEAAIKLVRK 120 (408)
T ss_pred hccCCCCCHHHHHHHHHHHHhccccccccC-C---------HHHHHHHHHHHhhCCCCCEEEEcCchHHHHHHHHHHHHH
Confidence 345888877777655544322111111111 1 123467788888775333457789999999999999998
Q ss_pred HHHhcCC-CCCCEEEE-cCCCCcccHHHHHHCCc------------EEEEEcCCCCCCCCHHHHHHHHHhcCCCEEEEEE
Q 001989 671 YHKARGD-HHRNVCII-PVSAHGTNPATAAMCGM------------KIVSVGTDAKGNINIEELRKAAEANRDNLSTLMV 736 (985)
Q Consensus 671 ~~~~~g~-~~~~~IIv-~~~~Hg~~~~~a~~~G~------------~vv~v~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv 736 (985)
|...+|. .++.+||. ...+||....+....|- .+..+|. .|+++++++++ .+++++|++
T Consensus 121 ~~~~~g~~~~r~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~l~~~~~--~~~~aavi~ 193 (408)
T PRK04612 121 WASSQGRPADKRVIVTFRGSFHGRTLAAVTATAQPKYQEGYEPLPGGFRYVDF-----NDVEALEAAMA--GGDVAAVML 193 (408)
T ss_pred HHHhhCCCCCCcEEEEECCCcCCccHHHHHhcCCcccccCCCCCCCCceEcCC-----CCHHHHHHhhC--CCCEEEEEE
Confidence 8644442 12456665 66899987655432221 1222333 38999999885 245666665
Q ss_pred EcCC-Ccccccc---CHHHHHHHHHHcCCEEEEEccccccccCCCCCCc--------cCCcEEEeCCcccccccCCCCCC
Q 001989 737 TYPS-THGVYEE---GIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGY--------IGADVCHLNLHKTFCIPHGGGGP 804 (985)
Q Consensus 737 ~~pn-~~G~i~~---di~eI~~la~~~galliVD~a~~~~~~~l~~pg~--------~g~Di~~~s~hK~l~~p~g~GGP 804 (985)
+-.+ ..|++.+ .+++|.++|+++|+++|+|+++. + +.+.+. .-+|++++ .|.++ +|.
T Consensus 194 eP~~~~gg~~~~~~~~l~~l~~l~~~~g~llI~DEv~t-g---~gr~G~~~a~~~~~~~pdi~t~--~K~l~-----~G~ 262 (408)
T PRK04612 194 EPIQGEGGVMPAAPGFLARVRALCDQHDALLVLDEIQC-G---MGRTGTLFAHWQEQVTPDIVTL--AKALG-----GGF 262 (408)
T ss_pred CCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecccc-C---CCcCCchhhhhhcCCCCCEEEE--cchhc-----CCC
Confidence 4323 3455543 28999999999999999999874 2 333332 12577655 48774 345
Q ss_pred ceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHH
Q 001989 805 GMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAK 884 (985)
Q Consensus 805 g~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~ 884 (985)
.+|.+++++++.+.+.... . .+++.|++..++++.+.|..+..+.+ .++..++.+++.+
T Consensus 263 piga~~~~~~~~~~~~~~~---------------~---~~t~~~~p~~~aaa~a~L~~~~~~~l---~~~~~~~g~~l~~ 321 (408)
T PRK04612 263 PIGAMLAGPKVAETMQFGA---------------H---GTTFGGNPLAAAVARVALRKLASPQI---AANVARQSAALRA 321 (408)
T ss_pred ceEEEEECHHHHhhhcCCC---------------c---CCCCCCCHHHHHHHHHHHHHHHhccH---HHHHHHHHHHHHH
Confidence 5777777776655442210 0 01223455666777777887765543 4566777888888
Q ss_pred Hhhcc---CCee--ecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCCCCCCCEEEEeccCCCCHHHHH
Q 001989 885 RLEKH---YPIL--FRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKSWTG 959 (985)
Q Consensus 885 ~L~~g---~~l~--~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~~p~~~~lris~t~~~t~eeId 959 (985)
+|++. ++++ ..+. + .+. -+.+.. .......++.+.|.++|+.+.... .+.+|+.|+...|++|||
T Consensus 322 ~l~~l~~~~~~i~~vrg~-G-l~~--~i~~~~---~~~~~a~~i~~~l~~~Gvlv~~~g---~~~lRl~Ppl~it~eeid 391 (408)
T PRK04612 322 GLEALNAEFGVFAQVRGR-G-LML--GAVLAP---AHAGQAGAILDLAAEHGLLLLQAG---PDVLRFVPALNLTDAELA 391 (408)
T ss_pred HHHHHHhhCCCeeeeecc-c-eEE--EEEecC---chhhHHHHHHHHHHHCCeEEeeCC---CCEEEEcCCccCCHHHHH
Confidence 88752 3322 1121 1 221 222210 001135678899999999875432 379999999999999999
Q ss_pred HHHccCChhHHHHhhccC
Q 001989 960 IVMLSSPSEKKLHRLKMG 977 (985)
Q Consensus 960 ~~~~~~~l~~~~~~~~~~ 977 (985)
+ +++++++++.++...
T Consensus 392 ~--~l~~l~~~l~~~~~~ 407 (408)
T PRK04612 392 D--GLARLRLALADYVAQ 407 (408)
T ss_pred H--HHHHHHHHHHHHhhc
Confidence 9 889999988776543
|
|
| >PRK05764 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=6e-16 Score=179.48 Aligned_cols=308 Identities=16% Similarity=0.162 Sum_probs=191.2
Q ss_pred hhHHHHHHHHHHHHHHHhCC--Cccce-ecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEE
Q 001989 628 QGYQEMFNNLGEWLCTITGF--DSFSL-QPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKI 704 (985)
Q Consensus 628 ~G~~~~~~e~~~~la~l~G~--~~~~~-~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~v 704 (985)
+|..++.+.+.+++.+..|. +...+ ..+++++|+..++.++ . .++++|+++++.|+.+...++..|+++
T Consensus 68 ~g~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~~---~-----~~gd~vl~~~p~y~~~~~~~~~~g~~~ 139 (393)
T PRK05764 68 AGIPELREAIAAKLKRDNGLDYDPSQVIVTTGAKQALYNAFMAL---L-----DPGDEVIIPAPYWVSYPEMVKLAGGVP 139 (393)
T ss_pred CChHHHHHHHHHHHHHHhCCCCCHHHEEEeCCcHHHHHHHHHHh---c-----CCCCEEEecCCCCcchHHHHHHcCCEE
Confidence 56655555555555555454 33334 4444555654333322 1 367899999998888877888899999
Q ss_pred EEEcCCC--CCCCCHHHHHHHHHhcCCCEEEEEEEcCC-Cccccc--cCHHHHHHHHHHcCCEEEEEccccccc-cCCC-
Q 001989 705 VSVGTDA--KGNINIEELRKAAEANRDNLSTLMVTYPS-THGVYE--EGIDEICKIIHDNGGQVYMDGANMNAQ-VGLT- 777 (985)
Q Consensus 705 v~v~~d~--~g~iD~e~L~~~i~~~~~~t~~Vvv~~pn-~~G~i~--~di~eI~~la~~~galliVD~a~~~~~-~~l~- 777 (985)
+.+++++ ++.+|+++++++++ +++++|++++|+ ++|.+. .++++|.++|+++|+++++|.++.... .+..
T Consensus 140 ~~~~~~~~~~~~~d~~~l~~~l~---~~~~~v~~~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~ 216 (393)
T PRK05764 140 VFVPTGEENGFKLTVEQLEAAIT---PKTKALILNSPSNPTGAVYSPEELEAIADVAVEHDIWVLSDEIYEKLVYDGAEF 216 (393)
T ss_pred EEEecCcccCCcCCHHHHHHhhC---ccceEEEEECCCCCCCcccCHHHHHHHHHHHHHCCcEEEEeccccceeeCCCCc
Confidence 9999874 35789999999997 788999999984 699884 258999999999999999999874211 1100
Q ss_pred -C-----CCccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhH
Q 001989 778 -S-----PGYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSAL 851 (985)
Q Consensus 778 -~-----pg~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~ 851 (985)
. +...+.++++.|++|+|+.| |.++|+++.++++.+.+.... . ..+.+++ ..
T Consensus 217 ~~~~~~~~~~~~~~i~~~s~SK~~~~~----G~RiG~i~~~~~~~~~~~~~~-~-----------~~~~~~~------~~ 274 (393)
T PRK05764 217 TSIASLSPELRDRTITVNGFSKAYAMT----GWRLGYAAGPKELIKAMSKLQ-S-----------HSTSNPT------SI 274 (393)
T ss_pred ccHHHcCCCCcCCEEEEecCcccccCc----cceeEEEecCHHHHHHHHHHH-h-----------hcccCCC------hH
Confidence 0 12234578888999998654 567999998877665442110 0 0011111 11
Q ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhccCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHH-HC
Q 001989 852 ILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLM-DY 930 (985)
Q Consensus 852 ~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~-~~ 930 (985)
...++...+.. ..+.+.+..+...++++++.+.|++..++.+..+.+..+ +.+.++......+.+..++.+.|. ++
T Consensus 275 ~q~~~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~g~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~ 351 (393)
T PRK05764 275 AQYAAVAALNG-PQDEVEEMRQAFEERRDLMVDGLNEIPGLECPKPEGAFY--VFPNVSKLLGKSITDSLEFAEALLEEA 351 (393)
T ss_pred HHHHHHHHHcC-ChHHHHHHHHHHHHHHHHHHHHHhhCCCCcccCCCcceE--EEEecccccccccCCHHHHHHHHHHhC
Confidence 11112222221 233444555556677888888887621222222323222 233443110001223578888875 57
Q ss_pred CCccCC-CCCCCCCEEEEeccCCCCHHHHHHHHccCChhHHHHhhc
Q 001989 931 GFHGPT-MSWPVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRLK 975 (985)
Q Consensus 931 Gi~~~~-~~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~~ 975 (985)
||.+.. ..|+..+++||++. .+++++++ +++.|.+.+.++|
T Consensus 352 gi~v~~g~~f~~~~~vRis~~--~~~~~~~~--~i~~l~~~~~~~~ 393 (393)
T PRK05764 352 GVAVVPGIAFGAPGYVRLSYA--TSLEDLEE--GLERIERFLESLK 393 (393)
T ss_pred CEEEccccccCCCCEEEEEec--CCHHHHHH--HHHHHHHHHHhhC
Confidence 998643 33444689999986 47999999 7788888877653
|
|
| >PRK06943 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.9e-16 Score=182.97 Aligned_cols=336 Identities=14% Similarity=0.134 Sum_probs=208.6
Q ss_pred ccccccccCCCccccccccccccccc-cCCCCchhhhhhHHHHHHHHHHHHHHHhCCC-ccceecCcHHHHHHHHHHHHH
Q 001989 592 IPLGSCTMKLNATTEMMPVTWPSFAN-IHPFAPADQAQGYQEMFNNLGEWLCTITGFD-SFSLQPNAGAAGEYAGLMVIR 669 (985)
Q Consensus 592 ~~lG~~t~~~~~~~~~~~~~~~~f~~-~~p~~p~e~~~G~~~~~~e~~~~la~l~G~~-~~~~~~~sGa~a~~a~l~air 669 (985)
..||++++.+..+...+......... .++. +...++.+.++++++.+ ...++.+||++|++++++.+|
T Consensus 66 ~~lGh~~p~v~~Ai~~ql~~~~~~~~~~~~~----------~~~~~lAe~L~~~~p~~~~~v~f~~sGseAve~AlKlA~ 135 (453)
T PRK06943 66 NLFGHANPRINAALKDQLDTLEHAMLAGCTH----------EPAIELAERLAALTGGTLGHAFFASDGASAVEIALKMSF 135 (453)
T ss_pred hcCCCCCHHHHHHHHHHHHhcCCccccccCC----------HHHHHHHHHHHHhCCCCCCEEEEeCCCHHHHHHHHHHHH
Confidence 45788877777665554322111111 1111 12346788888887643 235778999999999999998
Q ss_pred HHHHhcCCCCCCEEEE-cCCCCcccHHHHHHCCc------------EEEEEcCCCC-C-----------CCCHHHHHHHH
Q 001989 670 AYHKARGDHHRNVCII-PVSAHGTNPATAAMCGM------------KIVSVGTDAK-G-----------NINIEELRKAA 724 (985)
Q Consensus 670 ~~~~~~g~~~~~~IIv-~~~~Hg~~~~~a~~~G~------------~vv~v~~d~~-g-----------~iD~e~L~~~i 724 (985)
.|...+|..++.+||. ...+||....+....|- .+..+|.... + .-|++++++.+
T Consensus 136 ~~~~~rg~~~r~~Ii~~~~~yHG~t~gals~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~l 215 (453)
T PRK06943 136 HAWRNRGRGDKREFVCLANGYHGETIGALGVTDVALFKDAYDPLIRHAHVVASPDARGARPGETAADVAARALADVRRLF 215 (453)
T ss_pred HHHHHhCCCCCCEEEEECCCcCCCcHHhhcccCChhhhcccccCCCCCEEECCCCccccccCCCHHHHHHHHHHHHHHHH
Confidence 8765455444567775 67899977544332211 1333443211 1 12357888888
Q ss_pred HhcCCCEEEEEEEc-C-CCcccccc---CHHHHHHHHHHcCCEEEEEccccccccCCCCCCcc--------CCcEEEeCC
Q 001989 725 EANRDNLSTLMVTY-P-STHGVYEE---GIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYI--------GADVCHLNL 791 (985)
Q Consensus 725 ~~~~~~t~~Vvv~~-p-n~~G~i~~---di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~--------g~Di~~~s~ 791 (985)
+++.+++++|+++- . ...|++.+ -++++.++|+++|+++|+|+++ .|++++|.+ .+|+++++
T Consensus 216 ~~~~~~iAAviiEPvvqg~gG~~~~~~~yl~~lr~lc~~~gillI~DEV~----TG~GRtG~~fa~~~~gv~PDivt~g- 290 (453)
T PRK06943 216 AERAGKIAALIVEPLVQCAAGMAMHDPSYLRGLRALCDRYGVHLIADEIA----VGCGRTGTFFACEQAGVWPDFLCLS- 290 (453)
T ss_pred HhCCCceEEEEEeccccccCCcccCCHHHHHHHHHHHHHcCCEEEeechh----hCCCCCcchhHHHhCCCCCCeEeee-
Confidence 76667899999875 2 34566542 4899999999999999999876 445555543 27999874
Q ss_pred cccccccCCCC-CCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHHHHH
Q 001989 792 HKTFCIPHGGG-GPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTE 870 (985)
Q Consensus 792 hK~l~~p~g~G-GPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl~~ 870 (985)
|.++ +| -| +|.+++++++.+.+.... . ... ....+++.|+++.++++.+.|..+.++++.
T Consensus 291 -Kgl~----gG~~P-i~av~~~~ei~~~~~~~~--~---------~~~-~~~~~T~~gnpl~~aaa~a~L~~i~~~~l~- 351 (453)
T PRK06943 291 -KGIS----GGYLP-LSLVLSRDAIFAAFYDDD--V---------TRG-FLHSHSYTGNPLACRAALATLDLFAEDDVL- 351 (453)
T ss_pred -hhhc----cCccc-ceEEEEcHHHHHhhcccC--c---------cCC-ccCCCCCCCCHHHHHHHHHHHHHHHhcCHH-
Confidence 7763 33 25 556666777665442110 0 000 012235667888888899999998776554
Q ss_pred HHHHHHHHHHHHHHHhhcc--CC-ee-ecCCCCceeeEEEEEecCccccCCC-CHHHHHHHHHHCCCccCCCCCCCCCEE
Q 001989 871 ASKIAILNANYMAKRLEKH--YP-IL-FRGVNGTVAHEFIVDLRGLKNTAGI-EPEDVAKRLMDYGFHGPTMSWPVPGTL 945 (985)
Q Consensus 871 ~~~~~~~~a~~l~~~L~~g--~~-l~-~~~~~~~~~~~~iv~~~~~~~~~g~-~~~~v~~~L~~~Gi~~~~~~~p~~~~l 945 (985)
++..+..++|.++|++. .. +. ..+. + .+ +.+.+.. ..+... ....+.+++.++|+++... .+.+
T Consensus 352 --~~~~~~G~~l~~~L~~l~~~~~v~~vrG~-G-l~--~gvel~~-~~~~~~~~~~~i~~~~~~~Gll~~~~----g~~l 420 (453)
T PRK06943 352 --ARNARKSARLRAALAPLAAHPQVRHLRQR-G-TI--FAFDVAL-DGDAARTFSRRFFEAALERELLLRPI----GTTV 420 (453)
T ss_pred --HHHHHHHHHHHHHHHHHhcCCCEEeEecc-c-cE--EEEEEcc-CCCcchHHHHHHHHHHHHCCcEEEec----CCEE
Confidence 45666778888888652 11 11 1121 2 22 2223210 000010 1356888889999987533 3679
Q ss_pred EEeccCCCCHHHHHHHHccCChhHHHHhh
Q 001989 946 MIEPTESESKSWTGIVMLSSPSEKKLHRL 974 (985)
Q Consensus 946 ris~t~~~t~eeId~~~~~~~l~~~~~~~ 974 (985)
|++|+..+|++|||+ ++++|++++.++
T Consensus 421 ~~~Ppl~it~~eid~--~~~~l~~al~~~ 447 (453)
T PRK06943 421 YLMPPYVLDDDEIAW--LAERTRATLDAT 447 (453)
T ss_pred EEeCCCcCCHHHHHH--HHHHHHHHHHHH
Confidence 999999999999999 888998888765
|
|
| >PRK05093 argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.74 E-value=5.8e-16 Score=180.09 Aligned_cols=294 Identities=15% Similarity=0.126 Sum_probs=185.0
Q ss_pred HHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEE-cCCCCcccHHHHHHC------------
Q 001989 634 FNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCII-PVSAHGTNPATAAMC------------ 700 (985)
Q Consensus 634 ~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv-~~~~Hg~~~~~a~~~------------ 700 (985)
..+++++++++++.+ ..++.+||++|+++++.++|.|...++...+++||. ...+||.........
T Consensus 84 ~~~l~~~l~~~~~~~-~~~~~~sGseA~e~a~klar~~~~~~~~~~~~~ii~~~~~~HG~~~~~~~~~~~~~~~~~~~~~ 162 (403)
T PRK05093 84 ALRLAKKLIDATFAE-RVFFANSGAEANEAAFKLARRYACDRHGPEKTEIIAFHNSFHGRTLFTVSVGGQPKYSDGFGPK 162 (403)
T ss_pred HHHHHHHHHhhCCCC-EEEEeCchHHHHHHHHHHHHHHHhhcCCCCCCeEEEEcCCcCCchhhhHhhcCChhhhhcCCCC
Confidence 347888999988654 456779999999999998887743221123445554 668999876443221
Q ss_pred CcEEEEEcCCCCCCCCHHHHHHHHHhcCCCEEEEEEEcCCC-ccccc---cCHHHHHHHHHHcCCEEEEEccccccccCC
Q 001989 701 GMKIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPST-HGVYE---EGIDEICKIIHDNGGQVYMDGANMNAQVGL 776 (985)
Q Consensus 701 G~~vv~v~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~pn~-~G~i~---~di~eI~~la~~~galliVD~a~~~~~~~l 776 (985)
..+++.+|.+ |++++++.+. +++++|+++..+. .|++. ..+++|.++|+++|+++|+|.++. +++-.
T Consensus 163 ~~~~~~~~~~-----d~~~l~~~l~---~~~aaiiiep~~~~gg~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~-g~g~~ 233 (403)
T PRK05093 163 PADITHVPFN-----DLAAVKAVID---DHTCAVVVEPIQGEGGVIPATPEFLQGLRELCDQHNALLIFDEVQT-GMGRT 233 (403)
T ss_pred CCCcEEeCCC-----CHHHHHHHhc---CCeEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhh-CCCCC
Confidence 1234455543 8999999997 7899999985454 45442 139999999999999999999974 33211
Q ss_pred CCC---Cc--cCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhH
Q 001989 777 TSP---GY--IGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSAL 851 (985)
Q Consensus 777 ~~p---g~--~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~ 851 (985)
..+ .. ..+|+.++ .|+++ +|..+|++++++++.+.+..... . .. +.+++.
T Consensus 234 g~~~~~~~~~~~pdi~s~--sK~l~-----~G~rig~vv~~~~i~~~l~~~~~-------------~-~t----~~~~~~ 288 (403)
T PRK05093 234 GDLFAYMHYGVTPDILTS--AKALG-----GGFPIGAMLTTAEIASHFKVGTH-------------G-ST----YGGNPL 288 (403)
T ss_pred ccchhhhhcCCCCCEEEe--ccccc-----CCcceEEEEEcHHHHhhcCCCCC-------------C-CC----CCCCHH
Confidence 111 11 23676654 48774 45779999998887665532110 0 01 112334
Q ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc-c--CCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHH
Q 001989 852 ILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK-H--YPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLM 928 (985)
Q Consensus 852 ~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g--~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~ 928 (985)
.+.++.+.|+.+..+ +..++..++.+++.+.|++ + +.+....+....+ +.+.++. .......++++.|.
T Consensus 289 ~~~aa~a~L~~~~~~---~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~G~~--~~~~l~~---~~~~~~~~~~~~l~ 360 (403)
T PRK05093 289 ACAVAEAVFDIINTP---EVLEGVKARRQRFVDGLQKINQKYGVFSEIRGMGLL--IGAELKP---QYKGRARDFLNAAA 360 (403)
T ss_pred HHHHHHHHHHHHhhc---cHHHHHHHHHHHHHHHHHHHHhhCCCeEeEeeCceE--EEEEecC---cchhHHHHHHHHHH
Confidence 444455555555333 2335667788889988876 2 2221111111111 2233321 00013568999999
Q ss_pred HCCCccCCCCCCCCCEEEEeccCCCCHHHHHHHHccCChhHHHHhhc
Q 001989 929 DYGFHGPTMSWPVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRLK 975 (985)
Q Consensus 929 ~~Gi~~~~~~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~~ 975 (985)
++|+.+.... .+.+|++|+..++++||++ +++.|++++.++.
T Consensus 361 ~~Gv~v~~~g---~~~lRl~~~~~~~~~~i~~--~~~~l~~~l~~~~ 402 (403)
T PRK05093 361 EEGVMVLVAG---PDVLRFAPSLVIEEADIDE--GLARFEKAVAKVV 402 (403)
T ss_pred HCCeEEecCC---CCEEEEeCCCCCCHHHHHH--HHHHHHHHHHHhc
Confidence 9998875322 3789999999999999999 7899998887653
|
|
| >PLN02760 4-aminobutyrate:pyruvate transaminase | Back alignment and domain information |
|---|
Probab=99.74 E-value=6.7e-16 Score=182.65 Aligned_cols=339 Identities=14% Similarity=0.147 Sum_probs=202.5
Q ss_pred ccccccccCCCccccccccccccccccCCCCchhhhhhHHHHHHHHHHHHHHHhC-CCc-cceecCcHHHHHHHHHHHHH
Q 001989 592 IPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITG-FDS-FSLQPNAGAAGEYAGLMVIR 669 (985)
Q Consensus 592 ~~lG~~t~~~~~~~~~~~~~~~~f~~~~p~~p~e~~~G~~~~~~e~~~~la~l~G-~~~-~~~~~~sGa~a~~a~l~air 669 (985)
.+||++++.+..+...+....+.+.... .+..+...++.+.|++++. .+. ..++.+||++|++++++++|
T Consensus 101 ~~lGh~hp~v~~Av~~ql~~~~~~~~~~--------~~~~~~~~~lae~L~~~~~~~~~~~v~f~~SGsEA~e~AlKlAr 172 (504)
T PLN02760 101 TALGGSEPRLVAAATEQLNKLPFYHSFW--------NRTTKPSLDLAKELLEMFTARKMGKVFFTNSGSEANDTQVKLVW 172 (504)
T ss_pred cccCCCCHHHHHHHHHHHhhccceeccc--------ccCcHHHHHHHHHHHhhcCCCCCCEEEEeCChHHHHHHHHHHHH
Confidence 4688887777766555542222221110 0112334577888888753 222 34678999999999999999
Q ss_pred HHHHhcCCCCCCEEEE-cCCCCcccHHHHHHCCcE------------EEEEcCCCCCC-------------CCHHHHHHH
Q 001989 670 AYHKARGDHHRNVCII-PVSAHGTNPATAAMCGMK------------IVSVGTDAKGN-------------INIEELRKA 723 (985)
Q Consensus 670 ~~~~~~g~~~~~~IIv-~~~~Hg~~~~~a~~~G~~------------vv~v~~d~~g~-------------iD~e~L~~~ 723 (985)
.|...+|...+.+||. ...+||.........|.. +..++.+...+ ...++|+++
T Consensus 173 ~~~~~~g~~~r~~iI~~~~~yHG~t~~a~slsg~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~le~~ 252 (504)
T PLN02760 173 YYNNALGRPNKKKFIARSKSYHGSTLISASLSGLPALHQKFDLPAPFVLHTDCPHYWRFHLPGETEEEFSTRLADNLENL 252 (504)
T ss_pred HHHHhcCCCCCcEEEEECCCccCChHhhhhccCChhhccCCCCCCCCcEEeCCCcccccCCCCCcHHHHHHHHHHHHHHH
Confidence 8764445333456665 668999865444333221 22333211000 113567777
Q ss_pred HHh-cCCCEEEEEEEcC-CCccccccC----HHHHHHHHHHcCCEEEEEccccccccCCCCCCcc--------CCcEEEe
Q 001989 724 AEA-NRDNLSTLMVTYP-STHGVYEEG----IDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYI--------GADVCHL 789 (985)
Q Consensus 724 i~~-~~~~t~~Vvv~~p-n~~G~i~~d----i~eI~~la~~~galliVD~a~~~~~~~l~~pg~~--------g~Di~~~ 789 (985)
+.+ .++++++|+++.. ...|++. + +++|.++|+++|+++|+|+++ .|+++.|.+ -+|++++
T Consensus 253 l~~~~~~~iAAvI~EPv~g~gG~~~-p~~~yl~~lr~lc~~~g~lLI~DEV~----TGfGRtG~~~a~e~~gv~PDivtl 327 (504)
T PLN02760 253 ILKEGPETIAAFIAEPVMGAGGVIP-PPATYFEKIQAVLKKYDILFIADEVI----CAFGRLGTMFGCDKYNIKPDLVSL 327 (504)
T ss_pred HHhcCCCceEEEEECCccCCCCCcC-CCHHHHHHHHHHHHHcCCEEEecchh----hCCcccchhhHHHhcCCCCcEEEe
Confidence 742 3356778877653 3467776 5 999999999999999999887 344444432 2798876
Q ss_pred CCcccccccCCCCC-CceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHHH
Q 001989 790 NLHKTFCIPHGGGG-PGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGL 868 (985)
Q Consensus 790 s~hK~l~~p~g~GG-Pg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl 868 (985)
+ |.++ +|. |. |.+++++++.+.+.... . . .......+++.|+++.++++.+.|..+..+++
T Consensus 328 g--K~lg----gG~~Pi-gAv~~~~~i~d~~~~~~--~--------~-~~~~~h~~T~~gnPl~~Aaala~Le~i~~~~l 389 (504)
T PLN02760 328 A--KALS----SAYMPI-GAVLVSPEISDVIHSQS--N--------K-LGSFAHGFTYSGHPVSCAVALEALKIYKERNI 389 (504)
T ss_pred c--cccc----CCcccc-ceEeecHHHHhhhhccc--c--------c-ccCcccCCCCCCCHHHHHHHHHHHHHHHhCCH
Confidence 4 7763 332 54 44666777765542110 0 0 00001123455678888888899998876644
Q ss_pred HHHHHHHHHHHHHHHHHhhcc--CCee--ecCCCCceeeEEEEEecCcccc-CCC-----CHHHHHHHHHHCCCccCCCC
Q 001989 869 TEASKIAILNANYMAKRLEKH--YPIL--FRGVNGTVAHEFIVDLRGLKNT-AGI-----EPEDVAKRLMDYGFHGPTMS 938 (985)
Q Consensus 869 ~~~~~~~~~~a~~l~~~L~~g--~~l~--~~~~~~~~~~~~iv~~~~~~~~-~g~-----~~~~v~~~L~~~Gi~~~~~~ 938 (985)
.++..++.++|+++|++. ..++ +.+. + .+ +.+.+..-... ... -...+.+.|.++|+++...
T Consensus 390 ---~~~~~~~g~~l~~~L~~l~~~~~v~~vrG~-G-l~--~gie~~~~~~~~~~~~~~~~~~~~i~~~~~~~Gvl~~~~- 461 (504)
T PLN02760 390 ---PEHVNKIAPRFQDGIKAFSGSPIIGEIRGT-G-LI--LGTEFVDNKSPNDPFPAEWGVGAYFGAECKKRGMLVRVA- 461 (504)
T ss_pred ---HHHHHHHHHHHHHHHHHHhcCCCeeeEEeC-c-eE--EEEEEecCCcccccccchhHHHHHHHHHHHhCCcEEEec-
Confidence 456777888888888652 2221 1111 1 12 22222100000 000 0346778889999987532
Q ss_pred CCCCCEEEEeccCCCCHHHHHHHHccCChhHHHHhh
Q 001989 939 WPVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRL 974 (985)
Q Consensus 939 ~p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~ 974 (985)
.+.+|++|+..+|++|||+ +++++++++..+
T Consensus 462 ---g~~lrl~Ppl~it~eeid~--~~~~l~~al~~~ 492 (504)
T PLN02760 462 ---GDNIMMSPPLIITPEEVDE--LISIYGKALKAT 492 (504)
T ss_pred ---CCEEEEECCCCCCHHHHHH--HHHHHHHHHHHH
Confidence 2689999999999999999 778888887665
|
|
| >cd00609 AAT_like Aspartate aminotransferase family | Back alignment and domain information |
|---|
Probab=99.73 E-value=9.9e-16 Score=173.84 Aligned_cols=306 Identities=17% Similarity=0.149 Sum_probs=197.6
Q ss_pred cCCCCCCCCCcHHHHHHHHh--CCccccccCCChhhHhhhHHHHHHHHHHHHHHhcCCC------CcceeeccchHHHHH
Q 001989 171 IGMGYYNTHVPPVILRNIME--NPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLP------MSNASLLDEGTAAAE 242 (985)
Q Consensus 171 lG~g~y~~~~p~~v~~~i~~--~~~~~t~~~pyq~e~sqg~l~~i~e~q~~ia~L~g~~------~~~~sl~~~~ta~~e 242 (985)
++.|.||...++.+...+.. .......|. ..+|. .++++.++++++.+ ..++.+++|+|+++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~----~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~t~a~~ 73 (350)
T cd00609 3 LSIGEPDFPPPPEVLEALAAAALRAGLLGYY-----PDPGL----PELREAIAEWLGRRGGVDVPPEEIVVTNGAQEALS 73 (350)
T ss_pred CCCCCCCCCCCHHHHHHHHHHhhccCCCCCC-----CCCCc----HHHHHHHHHHHHHHhCCCCCcceEEEecCcHHHHH
Confidence 36677787766666544442 111112222 22233 33455566665544 557888899998887
Q ss_pred HHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCch----------hhhc-cCCCEeEEEEEcC-CCCe
Q 001989 243 AMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDLK----------DIDY-KSGDVCGVLVQYP-GTEG 310 (985)
Q Consensus 243 a~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~~----------~l~~-l~~~t~~V~v~~p-n~~G 310 (985)
+++.++. ++|++|++++..|+++...++. .|++++.++.+ +++. .++++++|++++| |++|
T Consensus 74 ~~~~~~~---~~g~~vl~~~~~~~~~~~~~~~----~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~i~~~~~~tG 146 (350)
T cd00609 74 LLLRALL---NPGDEVLVPDPTYPGYEAAARL----AGAEVVPVPLDEEGGFLLDLELLEAAKTPKTKLLYLNNPNNPTG 146 (350)
T ss_pred HHHHHhC---CCCCEEEEcCCCchhHHHHHHH----CCCEEEEEecccccCCccCHHHHHhhcCccceEEEEECCCCCCC
Confidence 7666552 3789999999999999888753 57788777642 2233 5778999999988 6799
Q ss_pred eeccHHHH---HHHHHhCCcEEEEEecCccccC--------CCCCCcccceEEEecC-ccccccCCCCCCcEEEEEEch-
Q 001989 311 EVLDYGDF---IKNAHANGVKVVMATDLLALTI--------LKPPGELGADIVVGSA-QRFGVPMGYGGPHAAFLATSQ- 377 (985)
Q Consensus 311 ~v~di~~I---~~~a~~~galliV~a~~~~lg~--------l~~~~~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~- 377 (985)
.+.|++++ .++||++|++++||. .++.+. +...+.++.|+++++. |+++ .+|+++|++++++
T Consensus 147 ~~~~~~~l~~l~~~~~~~~~~~ivD~-a~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~K~~~----~~g~~~G~i~~~~~ 221 (350)
T cd00609 147 AVLSEEELEELAELAKKHGILIISDE-AYAELVYDGEPPPALALLDAYERVIVLRSFSKTFG----LPGLRIGYLIAPPE 221 (350)
T ss_pred cccCHHHHHHHHHHHHhCCeEEEEec-chhhceeCCcccccccCcCccCcEEEEeecccccC----CcccceEEEecCHH
Confidence 99876555 489999999999943 222111 1224678899999998 7775 3467789999998
Q ss_pred hhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHH
Q 001989 378 EYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTF 457 (985)
Q Consensus 378 ~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l 457 (985)
++.+.+.... + ..+.+.. .....++.+++ ... .++++++.++..++++++
T Consensus 222 ~~~~~~~~~~-------------------------~-~~~~~~~-~~~~~~~~~~l--~~~-~~~~~~~~~~~~~~~~~l 271 (350)
T cd00609 222 ELLERLKKLL-------------------------P-YTTSGPS-TLSQAAAAAAL--DDG-EEHLEELRERYRRRRDAL 271 (350)
T ss_pred HHHHHHHHHH-------------------------H-hcccCCC-hHHHHHHHHHH--hCc-HHHHHHHHHHHHHHHHHH
Confidence 6776652100 0 0011111 12222222221 221 168899999999999999
Q ss_pred HHHHhcCCCeEEcCCCCcceEEEecCC---HHHHHHHHHHcCceeeee------cCCeEEEEeccCCCHHHHHHHHHHHh
Q 001989 458 ALGLKKLGTVEVQGLPFFDTVKVKCAD---AHAIASAAYKIEMNLRVV------DSNTVTASFDETTTLEDVDKLFIVFA 528 (985)
Q Consensus 458 ~~~L~~~g~~~~~~~~~~~~~~~~~~~---~~~v~~~L~~~GI~~~~~------~~~~lris~t~~~t~edId~li~aL~ 528 (985)
.+.|++.+...+........+.+..+. ...+.+.|.++||.+... .+..+|++++.. ++||++++++|+
T Consensus 272 ~~~L~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~gi~i~~~~~~~~~~~~~iRi~~~~~--~~~i~~~~~al~ 349 (350)
T cd00609 272 LEALKELGPLVVVKPSGGFFLWLDLPEGDDEEFLERLLLEAGVVVRPGSAFGEGGEGFVRLSFATP--EEELEEALERLA 349 (350)
T ss_pred HHHHHhcCCccccCCCccEEEEEecCCCChHHHHHHHHHhCCEEEecccccccCCCCeEEEEeeCC--HHHHHHHHHHhh
Confidence 999999863332222222233445443 566777777889987653 357899999988 999999999986
Q ss_pred C
Q 001989 529 G 529 (985)
Q Consensus 529 ~ 529 (985)
+
T Consensus 350 ~ 350 (350)
T cd00609 350 E 350 (350)
T ss_pred C
Confidence 3
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi |
| >PRK07482 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=7.7e-16 Score=181.02 Aligned_cols=344 Identities=13% Similarity=0.154 Sum_probs=207.3
Q ss_pred cccccccccCCCccccccccccccccccCCCCchhhhhhHHHHHHHHHHHHHHHhCCC-ccceecCcHHHHHHHHHHHHH
Q 001989 591 MIPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFD-SFSLQPNAGAAGEYAGLMVIR 669 (985)
Q Consensus 591 ~~~lG~~t~~~~~~~~~~~~~~~~f~~~~p~~p~e~~~G~~~~~~e~~~~la~l~G~~-~~~~~~~sGa~a~~a~l~air 669 (985)
...||++++.+..+...+......+..+.-+. .+...++.+.|++++..+ ...++.+||++|++++++.+|
T Consensus 61 ~~~lGh~~p~v~~Av~~q~~~~~~~~~~~~~~--------~~~~~~lAe~L~~~~p~~~~~v~f~~sGSEAve~AlKlAr 132 (461)
T PRK07482 61 CVNVGYGRTEVAEAIAEQAKELAYYHTYVGHG--------TEASITLSKRIIDRAPAGMSKVYYGLSGSDANETQIKLVW 132 (461)
T ss_pred hhcCCCCCHHHHHHHHHHHHhcCccccccccC--------CHHHHHHHHHHHHhCCCCcCEEEEeCchHHHHHHHHHHHH
Confidence 34688888877776555542222121110010 123457788888887432 234678999999999999999
Q ss_pred HHHHhcCCCCCCEEEE-cCCCCcccHHHHHHCC------------cEEEEEcCCC--C----C-------CCCHHHHHHH
Q 001989 670 AYHKARGDHHRNVCII-PVSAHGTNPATAAMCG------------MKIVSVGTDA--K----G-------NINIEELRKA 723 (985)
Q Consensus 670 ~~~~~~g~~~~~~IIv-~~~~Hg~~~~~a~~~G------------~~vv~v~~d~--~----g-------~iD~e~L~~~ 723 (985)
.|...+|..++.+||. ..++||....+....| -.+..++... . + .-++++|++.
T Consensus 133 ~~~~~~g~~~r~~Ii~~~~~YHG~t~ga~s~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l~~~ 212 (461)
T PRK07482 133 YYNNVLGRPEKKKIISRWRGYHGSGVVTGSLTGLSLFHQHFDLPIARVLHTEAPHYYRRADAGMSEEQFSAYCADELEEL 212 (461)
T ss_pred HHHHhcCCCCCceEEEecCccCCccHhhhhccCCchhhhccCCCCCCCEEcCCCccccccccCCCHHHHHHHHHHHHHHH
Confidence 8764445434667776 6789997644322211 1122333211 0 0 0146788888
Q ss_pred HHh-cCCCEEEEEEEcC-CCcccccc---CHHHHHHHHHHcCCEEEEEccccccccCCCCCCcc--------CCcEEEeC
Q 001989 724 AEA-NRDNLSTLMVTYP-STHGVYEE---GIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYI--------GADVCHLN 790 (985)
Q Consensus 724 i~~-~~~~t~~Vvv~~p-n~~G~i~~---di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~--------g~Di~~~s 790 (985)
+.+ .++++++|+++-. ...|++.+ -+++|.++|+++|+++|+|+++ .|+++.|.+ -+|+++++
T Consensus 213 ~~~~~~~~iAAvi~EPvqg~gG~~~~~~~yl~~lr~lc~~~giLlI~DEV~----tGfGRtG~~~a~~~~gv~PDiv~~g 288 (461)
T PRK07482 213 ILAEGPDTIAAFIAEPVLGTGGIVPPPAGYWPAIQAVLKKYDILLIADEVV----TGFGRLGSMFGSDHYGIEPDLITVA 288 (461)
T ss_pred HHhcCCCcEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHhCCEEEEeccc----cCCCcCcchhhHHhcCCCCCEEEEc
Confidence 853 2357888988743 34466642 3899999999999999999876 455555543 27999874
Q ss_pred CcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHHHHH
Q 001989 791 LHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTE 870 (985)
Q Consensus 791 ~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl~~ 870 (985)
|.++ +|-..+|.+++++++.+.+.... . ........+++.|+++.++++.+.|..+..+++.+
T Consensus 289 --Kgl~----gG~~Pi~av~~~~~i~~~~~~~~--~---------~~~~~~h~~T~~gnpl~~Aaa~a~L~~~~~~~l~~ 351 (461)
T PRK07482 289 --KGLT----SAYAPLSGSIVGEKVWDVLEQGS--D---------EHGAIGHGWTYSGHPICAAAALANLDILERENLVG 351 (461)
T ss_pred --cccc----cCccccceeeecHHHHHHHhccc--c---------cCCccccCCCCCcCHHHHHHHHHHHHHHHhCCHHH
Confidence 7763 33223455556766654332110 0 00000122356678888999999999887766544
Q ss_pred HHHHHHHHHHHHHHHhhcc---CCee--ecCCCCceeeEEEEEecCcccc-CCC-----CHHHHHHHHHHCCCccCCCCC
Q 001989 871 ASKIAILNANYMAKRLEKH---YPIL--FRGVNGTVAHEFIVDLRGLKNT-AGI-----EPEDVAKRLMDYGFHGPTMSW 939 (985)
Q Consensus 871 ~~~~~~~~a~~l~~~L~~g---~~l~--~~~~~~~~~~~~iv~~~~~~~~-~g~-----~~~~v~~~L~~~Gi~~~~~~~ 939 (985)
+..++.++|.++|++. ..++ +.+. + .+ +-+.+..-... ... ....+.+.|.++|+++...
T Consensus 352 ---~~~~~g~~l~~~L~~l~~~~~~v~~vrG~-G-lm--~giel~~~~~~~~~~~~~~~~~~~i~~~~~~~Gvl~~~~-- 422 (461)
T PRK07482 352 ---NAAEVGAYFRARLRAAFGDHPLVGEVRGV-G-ML--AAVEFVADRDDRTPFDPALKIGPQVSAAALERGVIARAM-- 422 (461)
T ss_pred ---HHHHHHHHHHHHHHHHHhcCCCEEEEeec-e-eE--EEEEeccCCCcCCCCChhhHHHHHHHHHHHHCCcEEecC--
Confidence 5567778888888642 2221 1121 1 22 22332100000 000 1356888899999987432
Q ss_pred CCCCEEEEeccCCCCHHHHHHHHccCChhHHHHhh
Q 001989 940 PVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRL 974 (985)
Q Consensus 940 p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~ 974 (985)
|..+.+|+.|+..+|++|||+ +++++++++.++
T Consensus 423 ~~~~~i~~~Ppl~it~~ei~~--~~~~l~~~l~~~ 455 (461)
T PRK07482 423 PHGDILGFAPPLVLTRAEADE--IVAIAKDAVDEV 455 (461)
T ss_pred CCCCEEEEeCCCCCCHHHHHH--HHHHHHHHHHHH
Confidence 124789999999999999999 788898888764
|
|
| >PLN02822 serine palmitoyltransferase | Back alignment and domain information |
|---|
Probab=99.73 E-value=5.3e-16 Score=183.33 Aligned_cols=280 Identities=12% Similarity=0.096 Sum_probs=185.1
Q ss_pred hhhHhhhHHHHHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCe
Q 001989 202 QAEIAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDI 281 (985)
Q Consensus 202 q~e~sqg~l~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi 281 (985)
.|+..-|+.+.+.++++.+|+++|.+. ..++.+|.+++.+++.++ . +++|.|+++...|.++...++. .+.
T Consensus 145 g~r~~yg~~~~~~~Lee~La~~~~~~~--~i~~s~G~~a~~sai~a~--~-~~gd~Ii~d~~~H~s~~~~~~l----s~~ 215 (481)
T PLN02822 145 GPRGFYGTIDVHLDCETKIAKFLGTPD--SILYSYGLSTIFSVIPAF--C-KKGDIIVADEGVHWGIQNGLYL----SRS 215 (481)
T ss_pred ccCccccCHHHHHHHHHHHHHHhCCCC--EEEECCHHHHHHHHHHHh--C-CCCCEEEEeCCccHHHHHHHHH----cCC
Confidence 344556788899999999999999764 445555555566655554 2 4889999999999999877642 355
Q ss_pred EEEEeCc---hhhhc-c---C------CCE-eEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCCCCC-
Q 001989 282 KVVVSDL---KDIDY-K---S------GDV-CGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKPPG- 345 (985)
Q Consensus 282 ~v~~v~~---~~l~~-l---~------~~t-~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~~~~- 345 (985)
++++++. ++++. + . +++ ++|++..+ +.+|.+.|+++|.++|+++|+++++ ++.+++|++...+
T Consensus 216 ~~~~~~~nd~~~l~~~l~~~~~~~~~~~~~~~~Ivve~i~~~~G~i~~L~~i~~l~~k~~~~LIv-DEa~s~gvlG~~G~ 294 (481)
T PLN02822 216 TIVYFKHNDMESLRNTLEKLTAENKRKKKLRRYIVVEAIYQNSGQIAPLDEIVRLKEKYRFRVLL-DESNSFGVLGKSGR 294 (481)
T ss_pred eEEEECCCCHHHHHHHHHHHhhhhcccCCCcEEEEEecCCCCCCCccCHHHHHHHHHHcCCEEEE-ECCccccccCCCCC
Confidence 6666643 33432 2 1 335 56666655 6799999999999999999999999 4667777664332
Q ss_pred ----cc-----cceEEEecC-ccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccc
Q 001989 346 ----EL-----GADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDK 415 (985)
Q Consensus 346 ----~~-----GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~ 415 (985)
.+ ..||++++. |+|+. .| ||+++++++++.+.. ...+|.+
T Consensus 295 G~~e~~~v~~~~~dii~~s~sKalg~---~G----G~i~g~~~ii~~~~~----------~~~~~~f------------- 344 (481)
T PLN02822 295 GLSEHFGVPIEKIDIITAAMGHALAT---EG----GFCTGSARVVDHQRL----------SSSGYVF------------- 344 (481)
T ss_pred ChHHHcCCCCCCCeEEEecchhhhhh---CC----eEEEcCHHHHHHHHh----------cCCceee-------------
Confidence 12 458999986 98863 22 788888887765410 0011111
Q ss_pred cCCCccchhHHHHHHHHH-HHHHhCcchHHHHHHHHHHHHHHHHHHHhcC-CCeEEcCCC--CcceEEEecC------C-
Q 001989 416 ATSNICTAQALLANMAAM-YAVYHGPEGLKTIAQRVHGLAGTFALGLKKL-GTVEVQGLP--FFDTVKVKCA------D- 484 (985)
Q Consensus 416 atsni~t~~~l~a~~aa~-~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~-g~~~~~~~~--~~~~~~~~~~------~- 484 (985)
+++.+.....|++ .+..+. ..+++.++..++.+++++.|+++ | +++...+ ++-.+.+... +
T Consensus 345 -----sa~lPp~~~~Aa~~aL~~l~--~~~~~~~~l~~~~~~l~~~L~~~~g-~~~~~~~~spi~~l~l~~~~~~~~~~~ 416 (481)
T PLN02822 345 -----SASLPPYLASAAITAIDVLE--DNPSVLAKLKENIALLHKGLSDIPG-LSIGSNTLSPIVFLHLEKSTGSAKEDL 416 (481)
T ss_pred -----ccccCHHHHHHHHHHHHHHH--hCHHHHHHHHHHHHHHHHHHHhcCC-cccCCCCCCCEEEEEeCCCcccccchH
Confidence 1111111222222 122221 12567888999999999999987 5 7765322 2212333211 1
Q ss_pred --HHHHHHHHH-HcCceeeee---------cCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 485 --AHAIASAAY-KIEMNLRVV---------DSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 485 --~~~v~~~L~-~~GI~~~~~---------~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
..+++++|. ++||.+... .+..+|++++..+|++||++++++|++
T Consensus 417 ~~~~~~~~~Ll~e~GV~v~~~~~~~~~~~~~~~~lRi~is~~~t~edI~~~~~~l~~ 473 (481)
T PLN02822 417 SLLEHIADRMLKEDSVLVVVSKRSTLDKCRLPVGIRLFVSAGHTESDILKASESLKR 473 (481)
T ss_pred HHHHHHHHHHHhcCCEEEEeeCCCCcCCCCCCCcEEEEECCCCCHHHHHHHHHHHHH
Confidence 367899987 789987532 124699999999999999999999974
|
|
| >PRK06173 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=6.1e-16 Score=180.08 Aligned_cols=332 Identities=15% Similarity=0.129 Sum_probs=204.2
Q ss_pred ccccccccCCCccccccccccccccccCCCCchhhhhhHHHHHHHHHHHHHHHhCCC-ccceecCcHHHHHHHHHHHHHH
Q 001989 592 IPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFD-SFSLQPNAGAAGEYAGLMVIRA 670 (985)
Q Consensus 592 ~~lG~~t~~~~~~~~~~~~~~~~f~~~~p~~p~e~~~G~~~~~~e~~~~la~l~G~~-~~~~~~~sGa~a~~a~l~air~ 670 (985)
..||++++.+..+...+.............. +...++.+.+++++..+ ...++.+||++|++++++.+|.
T Consensus 56 ~~lGh~~p~v~~ai~~q~~~~~~~~~~~~~~---------~~~~~lae~L~~~~p~~~~~v~f~~sGseAve~AlklAr~ 126 (429)
T PRK06173 56 ALHGYNHPRLNAAATNQLAKMSHIMFGGFTH---------EPAVELAQKLLEILPPSLNKIFFADSGSVAVEVAMKMALQ 126 (429)
T ss_pred ccCCCCCHHHHHHHHHHHHhcCCccccccCC---------HHHHHHHHHHHhhCCCCcCEEEEeCCchHHHHHHHHHHHH
Confidence 4578887777665544432222111101111 12346778888887422 1346789999999999999998
Q ss_pred HHHhcCCCCCCEEEE-cCCCCcccHHHHHHCC--------c-----EEEEEcCCCC------CCCCHHHHHHHHHhcCCC
Q 001989 671 YHKARGDHHRNVCII-PVSAHGTNPATAAMCG--------M-----KIVSVGTDAK------GNINIEELRKAAEANRDN 730 (985)
Q Consensus 671 ~~~~~g~~~~~~IIv-~~~~Hg~~~~~a~~~G--------~-----~vv~v~~d~~------g~iD~e~L~~~i~~~~~~ 730 (985)
|...+|..++.+||. ...+||....+....| + .+..+|.... ...+++.|++.+.++.++
T Consensus 127 ~~~~~g~~~r~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~l~~~i~~~~~~ 206 (429)
T PRK06173 127 YQQAKGEVQRTKFATIRSGYHGDTWHAMSVCDPVTGMHGLFNHSLPVQYFLPQPSIKFGEEWNDEAIEPLQDLLEQKGDE 206 (429)
T ss_pred HHHHhCCCCCcEEEEECCCcCCcchhhhccCCCchhhhhcccccCCCCeEeCCCCcccchhHHHHHHHHHHHHHHhCCCc
Confidence 865555334566765 6678996433322111 0 1233443110 012477788888755568
Q ss_pred EEEEEEEcC--CCcccccc---CHHHHHHHHHHcCCEEEEEccccccccCCCCCCcc--------CCcEEEeCCcccccc
Q 001989 731 LSTLMVTYP--STHGVYEE---GIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYI--------GADVCHLNLHKTFCI 797 (985)
Q Consensus 731 t~~Vvv~~p--n~~G~i~~---di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~--------g~Di~~~s~hK~l~~ 797 (985)
+++|+++-. ...|++.+ -+++|.++|+++|+++|+|++| .++ .+.|.+ .+|++++ .|.++
T Consensus 207 iAAvi~EPi~qg~gG~~~~~~~yl~~l~~lc~~~g~llI~DEv~-tG~---GrtG~~~a~~~~gv~PDiv~~--gK~l~- 279 (429)
T PRK06173 207 IAALILEPVVQGAGGMYFYSPTYLVKARELCDQYGVLLIFDEIA-TGF---GRTGKLFALEHAGVVPDIMCI--GKALT- 279 (429)
T ss_pred EEEEEEcchhhccCCcccCCHHHHHHHHHHHHHcCCeEEecchh-cCC---CcCCcchHHHhcCCCCCEEEe--ehhhh-
Confidence 999998752 34465532 3899999999999999999988 333 333322 3688875 47763
Q ss_pred cCCCCC-CceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHHHHHHHHHHH
Q 001989 798 PHGGGG-PGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAI 876 (985)
Q Consensus 798 p~g~GG-Pg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl~~~~~~~~ 876 (985)
|| .-++.+++++++.+.+..... + .. ...+++.|+++.++++.+.|+.+.++.+ .++..
T Consensus 280 ----gG~~p~~a~~~~~~i~~~~~~~~~----------~--~~-~~~~T~~g~p~~~aaa~a~l~~i~~~~~---~~~~~ 339 (429)
T PRK06173 280 ----GGYLTLSATITTEAIAQTICSGEA----------K--CF-MHGPTFMANPLACAIAAESIRLLLESPW---QQNIQ 339 (429)
T ss_pred ----CCccccceEEecHHHHHHHhcCCC----------C--cc-ccCCCCCcCHHHHHHHHHHHHHHHhCCH---HHHHH
Confidence 44 334555567666554421100 0 00 1112344577788888888888866544 44677
Q ss_pred HHHHHHHHHhhc--cCCeee--cCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCCCCCCCEEEEeccCC
Q 001989 877 LNANYMAKRLEK--HYPILF--RGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTES 952 (985)
Q Consensus 877 ~~a~~l~~~L~~--g~~l~~--~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~~p~~~~lris~t~~ 952 (985)
++.++|+++|++ .+..+. .+. + .+ +.+.+.. ......+.+.|.++|+++... .+.||+.|+..
T Consensus 340 ~~g~~l~~~L~~~~~~~~v~~vRg~-G-l~--~~iel~~-----~~~~~~i~~~l~e~Gi~v~~~----g~~l~~~Ppl~ 406 (429)
T PRK06173 340 RIEAQLKQELAPAAEFDSVAEVRVL-G-AI--GVVEMKE-----PVNMATLQPRFVEHGIWVRPF----GKLVYIMPPFI 406 (429)
T ss_pred HHHHHHHHHHHHhhcCCCeeeeecc-c-eE--EEEEeCC-----cccHHHHHHHHHHCCeEEEec----CCEEEEeCCcc
Confidence 788889998874 233211 111 1 12 2233321 124578999999999988543 36999999999
Q ss_pred CCHHHHHHHHccCChhHHHHhh
Q 001989 953 ESKSWTGIVMLSSPSEKKLHRL 974 (985)
Q Consensus 953 ~t~eeId~~~~~~~l~~~~~~~ 974 (985)
.|++|||+ ++++|++++...
T Consensus 407 it~~ei~~--~~~~l~~~l~~~ 426 (429)
T PRK06173 407 ISPDELSQ--LTSGLLRVLKQE 426 (429)
T ss_pred CCHHHHHH--HHHHHHHHHHHH
Confidence 99999999 889999888653
|
|
| >PRK08117 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=7.5e-16 Score=180.63 Aligned_cols=331 Identities=13% Similarity=0.106 Sum_probs=198.8
Q ss_pred cccccccccCCCcccccccccccccc-ccCCCCchhhhhhHHHHHHHHHHHHHHHhC-CCccceecCcHHHHHHHHHHHH
Q 001989 591 MIPLGSCTMKLNATTEMMPVTWPSFA-NIHPFAPADQAQGYQEMFNNLGEWLCTITG-FDSFSLQPNAGAAGEYAGLMVI 668 (985)
Q Consensus 591 ~~~lG~~t~~~~~~~~~~~~~~~~f~-~~~p~~p~e~~~G~~~~~~e~~~~la~l~G-~~~~~~~~~sGa~a~~a~l~ai 668 (985)
...||++++.+..+...+........ +.+.. +...++.+.|+++++ .....++.+||++|++++++++
T Consensus 54 ~~~lGh~~p~v~~a~~~q~~~~~~~~~~~~~~----------~~~~~la~~L~~~~~~~~~~v~f~~SGseA~e~AlklA 123 (433)
T PRK08117 54 VANVGHRHPKVVQAIKEQADKLMHGPSGVIYY----------ESILKLAEELAEITPGGLDCFFFSNSGAEAIEGALKLA 123 (433)
T ss_pred hccCCCCCHHHHHHHHHHHHhccCccccccCC----------HHHHHHHHHHHHhCCCCCCEEEEeCcHHHHHHHHHHHH
Confidence 45688888777766555432211111 11111 234578889999883 2234567799999999999988
Q ss_pred HHHHHhcCCCCCCEEEE-cCCCCcccHHHHHHCC--------c-----EEEEEcCCCCCC------------CCHHHHHH
Q 001989 669 RAYHKARGDHHRNVCII-PVSAHGTNPATAAMCG--------M-----KIVSVGTDAKGN------------INIEELRK 722 (985)
Q Consensus 669 r~~~~~~g~~~~~~IIv-~~~~Hg~~~~~a~~~G--------~-----~vv~v~~d~~g~------------iD~e~L~~ 722 (985)
|.|. ++++||. ...+||.........+ . .+..+|...... .|++++++
T Consensus 124 r~~t------gr~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 197 (433)
T PRK08117 124 KHVT------KRPYIISFTGCFHGRTLGALSVTTSKSKYRKYYQPLLGSVYQAPYPYCDRCPKGEDPEVCFLECLRDLES 197 (433)
T ss_pred HHhc------CCCeEEEECCCcCCcCHHHHhhcCCCccccccCCCCCCCcEEeCCCccccccccCchhHHHHHHHHHHHH
Confidence 8762 3455665 6789998766532211 0 123444321111 26777888
Q ss_pred HHHh--cCCCEEEEEEEcC-CCccccccC----HHHHHHHHHHcCCEEEEEccccccccCCCCCCc------cC--CcEE
Q 001989 723 AAEA--NRDNLSTLMVTYP-STHGVYEEG----IDEICKIIHDNGGQVYMDGANMNAQVGLTSPGY------IG--ADVC 787 (985)
Q Consensus 723 ~i~~--~~~~t~~Vvv~~p-n~~G~i~~d----i~eI~~la~~~galliVD~a~~~~~~~l~~pg~------~g--~Di~ 787 (985)
.+++ .++++++|+++-. +..|.+. + +++|.++|+++|+++++|++|. + +.+.|. +| +|++
T Consensus 198 ~~~~~~~~~~~aavi~Epi~~~~G~~~-~~~~~l~~l~~lc~~~g~llI~DEv~t-G---~gr~G~~~~~~~~gv~pDi~ 272 (433)
T PRK08117 198 LFKHQVTPEEVAAVIIEPVLGEGGYIV-PPKSFLKKLREICDRHGILLIFDEVQT-G---FGRTGEWFAAQTFGVVPDIM 272 (433)
T ss_pred HHHhccCCCcEEEEEECCeeCCCCCcc-CCHHHHHHHHHHHHHcCCEEEEecchh-c---cCccccchhHhhcCCCCCEe
Confidence 7763 2356888887653 4567775 5 9999999999999999999884 3 333331 22 5775
Q ss_pred EeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHH
Q 001989 788 HLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKG 867 (985)
Q Consensus 788 ~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eG 867 (985)
++ .|.++ +|..+|.+++++++...+..... .+++.|+++.++++.+.|..+..++
T Consensus 273 t~--sK~lg-----~G~pigav~~~~~i~~~~~~~~~------------------~~T~~~np~~~aaa~a~L~~l~~~~ 327 (433)
T PRK08117 273 TI--AKGIA-----SGLPLSAVVASKELMEQWPLGSH------------------GTTFGGNPVACAAALATLEVIKEEK 327 (433)
T ss_pred eh--hhhcc-----CCCcceeEEEcHHHHhhccCCCC------------------CCCCCcCHHHHHHHHHHHHHHHhcc
Confidence 44 47774 33446677778776654421100 1123345666677778888775554
Q ss_pred HHHHHHHHHHHHHHHHHHhhcc---CCeeecCCCCceeeEEEEEecCc-cccCCCCHHHHHHHHHHCCCccCCCCCCCCC
Q 001989 868 LTEASKIAILNANYMAKRLEKH---YPILFRGVNGTVAHEFIVDLRGL-KNTAGIEPEDVAKRLMDYGFHGPTMSWPVPG 943 (985)
Q Consensus 868 l~~~~~~~~~~a~~l~~~L~~g---~~l~~~~~~~~~~~~~iv~~~~~-~~~~g~~~~~v~~~L~~~Gi~~~~~~~p~~~ 943 (985)
+ .++..++.++++++|++. +.+....+....+ +-+.+..- +.........+.+.|.++|+.+..... ..+
T Consensus 328 l---~~~~~~~g~~l~~~L~~l~~~~~~~~~vrg~Gl~--~gi~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~g~-~~~ 401 (433)
T PRK08117 328 L---LDNANEMGAYALERLEVLKEKHPVIGDVRGIGLM--IGIEIVDPDGEPDGDAVEKILDKCLEKGLLFYLCGN-AGN 401 (433)
T ss_pred H---HHHHHHHHHHHHHHHHHHHhcCCceeeeecCCcE--EEEEEecCCCCcchHHHHHHHHHHHHCCCEEeecCC-CCC
Confidence 4 345566778888888652 2321111101122 12222100 000011245678889999998643321 147
Q ss_pred EEEEeccCCCCHHHHHHHHccCChhHHHHhhc
Q 001989 944 TLMIEPTESESKSWTGIVMLSSPSEKKLHRLK 975 (985)
Q Consensus 944 ~lris~t~~~t~eeId~~~~~~~l~~~~~~~~ 975 (985)
.+|++|+..+|++|||+ +++.|.+++.++.
T Consensus 402 ~lRl~p~~~~t~~~i~~--~~~~l~~~l~~~~ 431 (433)
T PRK08117 402 VLRMIPPLTVTKEEIDE--GLDILDEALTEYE 431 (433)
T ss_pred EEEEeCCccCCHHHHHH--HHHHHHHHHHHHh
Confidence 99999999999999999 8899999887664
|
|
| >PRK06541 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=7.1e-16 Score=181.12 Aligned_cols=341 Identities=16% Similarity=0.154 Sum_probs=204.4
Q ss_pred ccccccccCCCccccccccccccccccCCCCchhhhhhHHHHHHHHHHHHHHHhCCCc-cceecCcHHHHHHHHHHHHHH
Q 001989 592 IPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFDS-FSLQPNAGAAGEYAGLMVIRA 670 (985)
Q Consensus 592 ~~lG~~t~~~~~~~~~~~~~~~~f~~~~p~~p~e~~~G~~~~~~e~~~~la~l~G~~~-~~~~~~sGa~a~~a~l~air~ 670 (985)
..||++++.+..+...+......+.+. .+. .+...++.+.+++++..+. ..++.+||++|++++++.+|.
T Consensus 64 ~~lGh~~p~v~~Av~~q~~~~~~~~~~-~~~--------~~~~~~la~~l~~~~p~~~~~v~f~~sGseAve~AlklAr~ 134 (460)
T PRK06541 64 VQVGHGRAELAEAAAKQAGTLAFFPLW-SYA--------HPPAIELAERLAALAPGDLNRVFFTTGGSEAVESAWKLAKQ 134 (460)
T ss_pred ccCCCCCHHHHHHHHHHHhhCcCcccc-ccC--------CHHHHHHHHHHHHhCCCCcCEEEEcCCcHHHHHHHHHHHHH
Confidence 458888877776655554322222111 111 1223467778888874322 346789999999999999998
Q ss_pred HHHhcCCCCCCEEEE-cCCCCcccHHHHHHCCc------------EEEEEcCCCCC-----CCC--------HHHHHHHH
Q 001989 671 YHKARGDHHRNVCII-PVSAHGTNPATAAMCGM------------KIVSVGTDAKG-----NIN--------IEELRKAA 724 (985)
Q Consensus 671 ~~~~~g~~~~~~IIv-~~~~Hg~~~~~a~~~G~------------~vv~v~~d~~g-----~iD--------~e~L~~~i 724 (985)
|....|..++.+||. ...+||....+....|. .+..+|.+... ..| ++++++.+
T Consensus 135 ~~~~~g~~~r~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 214 (460)
T PRK06541 135 YFKLTGKPGKHKVISRAIAYHGTTQGALAITGLPAFKAPFEPLVPGGFRVPNTNFYRAPELGDDPEAFGRWAADRIEEAI 214 (460)
T ss_pred HHHhcCCCCccEEEEEcCcccCcchhhhcCcCChhhccccCCCCCCcEEeCCCccccccccCCCHHHHHHHHHHHHHHHH
Confidence 754344323566765 67899987655432211 13334432111 112 36788888
Q ss_pred Hhc-CCCEEEEEEEcC-CCccccccC----HHHHHHHHHHcCCEEEEEccccccccCCCCCCcc--------CCcEEEeC
Q 001989 725 EAN-RDNLSTLMVTYP-STHGVYEEG----IDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYI--------GADVCHLN 790 (985)
Q Consensus 725 ~~~-~~~t~~Vvv~~p-n~~G~i~~d----i~eI~~la~~~galliVD~a~~~~~~~l~~pg~~--------g~Di~~~s 790 (985)
++. ++++++|+++-. +..|.+. + +++|.++|+++|+++|+|+++. ++++.|.+ .+|++++
T Consensus 215 ~~~~~~~~Aavi~EPv~g~~G~~~-~~~~yl~~l~~lc~~~g~llI~DEV~t----GfGR~G~~~a~~~~gv~PDivt~- 288 (460)
T PRK06541 215 EFEGPDTVAAVFLEPVQNAGGCFP-PPPGYFERVREICDRYDVLLVSDEVIC----AFGRLGEMFGCERFGYVPDIITC- 288 (460)
T ss_pred HhcCCCCEEEEEECCccCCCCCcc-CCHHHHHHHHHHHHHcCCEEEEechhh----CCCcCchhhhhhhcCCCCCEEEe-
Confidence 642 345666666542 4567775 5 9999999999999999999872 22233322 3688875
Q ss_pred CcccccccCCCCCC-ceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHHHH
Q 001989 791 LHKTFCIPHGGGGP-GMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLT 869 (985)
Q Consensus 791 ~hK~l~~p~g~GGP-g~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl~ 869 (985)
.|.++ ||. .+|.+++++++...+.... . ... ..+++.|++..++++.+.|..+..+++.
T Consensus 289 -gK~l~-----~G~~pigav~~~~~i~~~~~~~~-~------------~~~-~~~T~~gnp~~~aaala~l~~l~~~~~~ 348 (460)
T PRK06541 289 -AKGIT-----SGYSPLGAMIASDRLFEPFLDGP-T------------MFL-HGYTFGGHPVSAAVALANLDIFEREGLL 348 (460)
T ss_pred -ccccc-----CCccceeEEEEcHHHHHHhhcCC-C------------ccc-cCCCCCCCHHHHHHHHHHHHHHHhccHH
Confidence 37763 343 3666667776654332110 0 000 1123455677777888888887766543
Q ss_pred HHHHHHHHHHHHHHHHhhcc--CCee--ecCCCCceeeEEEEEecC---ccccC-CCC-----HHHHHHHHHHCCCccCC
Q 001989 870 EASKIAILNANYMAKRLEKH--YPIL--FRGVNGTVAHEFIVDLRG---LKNTA-GIE-----PEDVAKRLMDYGFHGPT 936 (985)
Q Consensus 870 ~~~~~~~~~a~~l~~~L~~g--~~l~--~~~~~~~~~~~~iv~~~~---~~~~~-g~~-----~~~v~~~L~~~Gi~~~~ 936 (985)
++..++.++|.++|++. ..++ ..+. +. + +.+.+.. .+... ... ...+.+.|.++|+++..
T Consensus 349 ---~~~~~~g~~l~~~L~~l~~~~~v~~vrg~-Gl-~--~~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~ 421 (460)
T PRK06541 349 ---DHVRDNEPAFRATLEKLLDLPIVGDVRGD-GY-F--YGIELVKDKATKETFTDDESERLLRGFLSPALFEAGLYCRA 421 (460)
T ss_pred ---HHHHHHHHHHHHHHHHhhcCCCeEEEEec-ce-E--EEEEEecCcccccCCcchhhhhhHHHHHHHHHHhCCeEEEe
Confidence 56778889999988762 2221 1121 22 2 2222210 00000 000 12567888999999854
Q ss_pred CCCCCCCEEEEeccCCCCHHHHHHHHccCChhHHHHhhccC
Q 001989 937 MSWPVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRLKMG 977 (985)
Q Consensus 937 ~~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~~~~ 977 (985)
... -.+.||++|+..+|++|||+ ++++|++++.++.++
T Consensus 422 ~~~-g~~~lrl~Ppl~~t~~~id~--~~~~l~~~l~~~~~~ 459 (460)
T PRK06541 422 DDR-GDPVVQLAPPLISGQEEFDE--IEQILRSVLTEAWAR 459 (460)
T ss_pred cCC-CCCEEEEECCCCCCHHHHHH--HHHHHHHHHHHHHhc
Confidence 211 13689999999999999999 889999999887764
|
|
| >TIGR01437 selA_rel uncharacterized pyridoxal phosphate-dependent enzyme | Back alignment and domain information |
|---|
Probab=99.73 E-value=5.4e-16 Score=177.43 Aligned_cols=297 Identities=15% Similarity=0.125 Sum_probs=193.0
Q ss_pred CcHHHHHHHHhCCccccccCCChhhHhhhHHHHHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCC---
Q 001989 180 VPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKK--- 256 (985)
Q Consensus 180 ~p~~v~~~i~~~~~~~t~~~pyq~e~sqg~l~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~--- 256 (985)
.|+.+.+++... ...|+ +.-+.+.++++.+|+++|.+ ++.+++|+|+++..+++++ .. +||
T Consensus 25 ~~~~v~~a~~~~---~~~~~--------~~~~~~~~~~~~~a~~~g~~--~~~~~~g~t~al~~al~al-~~--~Gd~~~ 88 (363)
T TIGR01437 25 VSDEVADAQKRG---AQNYF--------EIKELVNKTGEYIANLLGVE--DAVIVSSASAGIAQSVAAV-IT--RGNRYL 88 (363)
T ss_pred CCHHHHHHHHHH---HhcCC--------CHHHHHHHHHHHHHHhhCCC--eEEEEcCHHHHHHHHHHHH-hc--CCCcch
Confidence 677776555542 22232 22366788999999999987 4778999999888877765 22 566
Q ss_pred ------------EEEEcCCCChhHHHHHHHhhcCCCeEEEEeC------chhhhc-cCCCEeEEE-EEc-CCCCeeeccH
Q 001989 257 ------------TFIIASNCHPQTIDICITRADGFDIKVVVSD------LKDIDY-KSGDVCGVL-VQY-PGTEGEVLDY 315 (985)
Q Consensus 257 ------------~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~------~~~l~~-l~~~t~~V~-v~~-pn~~G~v~di 315 (985)
+||++...+..+...+.......|.++++++ ++++++ ++++|++++ +++ +|++|.+.|+
T Consensus 89 ~~~~~~s~~~~~eVi~~~~~~~~~~~~~~~~~~~~g~~~v~v~~~~~~d~~~le~ai~~~t~ai~~v~~~~~~~g~~~~~ 168 (363)
T TIGR01437 89 VENLHDSKIEVNEVVLPKGHNVDYGAPVETMVRLGGGKVVEAGYANECSAEQLEAAITEKTAAILYIKSHHCVQKSMLSV 168 (363)
T ss_pred hhcccccccccceEEEECccchhcCCchHHHHHhcCCeEEEEcCCCCCCHHHHHHhcChhceEEEEEecCCCCcCCcCCH
Confidence 7777763333332122222334688888764 467777 889999776 555 4889999999
Q ss_pred HHHHHHHHhCCcEEEEEecCccccCCCCCCcccceEEEecC-ccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecC
Q 001989 316 GDFIKNAHANGVKVVMATDLLALTILKPPGELGADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDS 394 (985)
Q Consensus 316 ~~I~~~a~~~galliV~a~~~~lg~l~~~~~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~ 394 (985)
++|+++||++|+++++|+ ..+.. +....++|+|++++|+ |+|+ ||-.|+++.++++++.+.....|
T Consensus 169 ~~i~~~a~~~gi~vivD~-a~~~~-~~~~~~~g~D~~~~S~~K~l~------gp~~G~l~~~~~~i~~~~~~~~~----- 235 (363)
T TIGR01437 169 EDAAQVAQEHNLPLIVDA-AAEED-LQKYYRLGADLVIYSGAKAIE------GPTSGLVLGKKKYIEWVKLQSKG----- 235 (363)
T ss_pred HHHHHHHHHcCCeEEEEC-CCCCc-hHHHHHcCCCEEEEeCCcccC------CCceEEEEEcHHHHHHHHhccCC-----
Confidence 999999999999999953 22321 1223468999999998 6564 44568888888777665321111
Q ss_pred CCCcceeeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcC--C
Q 001989 395 SGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQG--L 472 (985)
Q Consensus 395 ~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~--~ 472 (985)
..+. .+.+|. .+.++.+++ .++...|.+.+.++. +++.+++++|++++|+++.. +
T Consensus 236 -~~~~-------------~~~~~~------~~~gl~aAl--~~~~~~~~~~~~~~~-~~~~~l~~~L~~i~g~~~~~~~~ 292 (363)
T TIGR01437 236 -IGRA-------------MKVGKE------NILGLTAAL--EQYLSTGKESGAEMV-AKLTPFIEALNTLKGVSASIVQD 292 (363)
T ss_pred -Ccce-------------eccCHH------HHHHHHHHH--HHHHccCcccHHHHH-HHHHHHHHHHhcCCCeEEEEecC
Confidence 0010 112222 244555555 333334444444444 45668999999985588762 1
Q ss_pred -C--Cc--ceEEEecC--C--HHHHHHHHHHcC--ceeeee--cCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 473 -P--FF--DTVKVKCA--D--AHAIASAAYKIE--MNLRVV--DSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 473 -~--~~--~~~~~~~~--~--~~~v~~~L~~~G--I~~~~~--~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
. .+ ..++|+.. + +.++.++|.++| |..+.. ..+.+++++.. ++++|+|+++++|.+
T Consensus 293 ~~~~~~~~~~v~~~~~~~g~~~~~l~~~L~~~~~~I~~r~~~~~~~~~~l~~~~-~~~~e~~~~~~~l~~ 361 (363)
T TIGR01437 293 EAGRDIARAEIRFDESELGMTAADVVQALRQGEPAIYTRGYKANEGIIEIDPRS-VTGGQLDIIVERIRE 361 (363)
T ss_pred CCCCcCceEEEEEeccCCCCCHHHHHHHHhcCCCCEEEeeeeecCCeEEEEeec-CCHHHHHHHHHHHHH
Confidence 1 11 23555542 3 899999999877 555542 46889999986 559999999999974
|
This model describes a protein related to a number of pyridoxal phosphate-dependent enzymes, and in particular to selenocysteine synthase (SelA), which converts Ser to selenocysteine on its tRNA. While resembling SelA, this protein is found only in species that have a better candidate SelA or else lack the other genes (selB, selC, and selD) required for selenocysteine incorporation. |
| >PRK00950 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.9e-16 Score=181.49 Aligned_cols=283 Identities=14% Similarity=0.156 Sum_probs=180.8
Q ss_pred HHHHHHHHHHhCCCccceec-CcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcCCCCC
Q 001989 635 NNLGEWLCTITGFDSFSLQP-NAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKG 713 (985)
Q Consensus 635 ~e~~~~la~l~G~~~~~~~~-~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~d~~g 713 (985)
.++++.+++++|.+...+.. ++|+++. ...+++.+. +++++|+++++.+..+...++..|++++.+|.++++
T Consensus 72 ~~lr~~ia~~~~~~~~~i~~~~~Ga~~~--i~~~~~~~~-----~~gd~vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~ 144 (361)
T PRK00950 72 PELREALSKYTGVPVENIIVGGDGMDEV--IDTLMRTFI-----DPGDEVIIPTPTFSYYEISAKAHGAKPVYAKREEDF 144 (361)
T ss_pred HHHHHHHHHHhCCCHHHEEEeCCCHHHH--HHHHHHHhc-----CCCCEEEEcCCChHHHHHHHHHcCCEEEEeecCCCC
Confidence 57888999999988765555 5565422 122233221 367889998876655555677889999999987777
Q ss_pred CCCHHHHHHHHHhcCCCEEEEEEEcCC-CccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCC--CccCCcEEEeC
Q 001989 714 NINIEELRKAAEANRDNLSTLMVTYPS-THGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSP--GYIGADVCHLN 790 (985)
Q Consensus 714 ~iD~e~L~~~i~~~~~~t~~Vvv~~pn-~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~p--g~~g~Di~~~s 790 (985)
.+|++++++.++ +++++|++++|+ ++|.+. +.++|.++|+++|+++++|+++..-...-..+ ....--+++.|
T Consensus 145 ~~~~~~l~~~~~---~~~~~v~~~~p~nptG~~~-~~~~l~~l~~~~~~~li~De~y~~~~~~~~~~~~~~~~~vi~~~S 220 (361)
T PRK00950 145 SLDVDSVLNAIT---EKTKVIFLCTPNNPTGNLI-PEEDIRKILESTDALVFVDEAYVEFAEYDYTPLALEYDNLIIGRT 220 (361)
T ss_pred CcCHHHHHHHhc---cCCCEEEEeCCCCCCCCCc-CHHHHHHHHHHCCcEEEEECchhhhCccchHHHHHhcCCEEEEEe
Confidence 899999999987 678889999984 799998 89999999999999999999984211110000 11112256678
Q ss_pred CcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHHHHH
Q 001989 791 LHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTE 870 (985)
Q Consensus 791 ~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl~~ 870 (985)
++|.|+.| |.++|++++++++...+... + ...+++ .....++..++. ..+-+.+
T Consensus 221 ~SK~~g~~----GlRiG~~~~~~~~~~~~~~~------------~--~~~~~~------~~~~~~a~~~l~--~~~~~~~ 274 (361)
T PRK00950 221 FSKVFGLA----GLRIGYGFVPEWLIDYYMRA------------K--TPFSLT------RLSQAAAIAALS--DKEYIEK 274 (361)
T ss_pred ehHhhcCc----hhhcchhcCCHHHHHHHHHh------------c--CCCCCC------HHHHHHHHHHhc--CHHHHHH
Confidence 88988543 56799999887665433211 0 001111 111122223332 1222444
Q ss_pred HHHHHHHHHHHHHHHhhccCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCC-CCC--CCCEEEE
Q 001989 871 ASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTM-SWP--VPGTLMI 947 (985)
Q Consensus 871 ~~~~~~~~a~~l~~~L~~g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~-~~p--~~~~lri 947 (985)
..++..++++++.+.|. +.+ . ++ +..+ +.++++ +.+..+++++|.++||.+... .++ .++++|+
T Consensus 275 ~~~~~~~~r~~l~~~l~--~~~-~-~~-~~~~--i~~~~~------~~~~~~~~~~l~~~gv~v~~~~~f~~~~~~~lRi 341 (361)
T PRK00950 275 SIEHGIKSREYLYNELP--FKV-Y-PS-EANF--VLVDVT------PMTAKEFCEELLKRGVIVRDCTSFRGLGDYYIRV 341 (361)
T ss_pred HHHHHHHHHHHHHhhcC--eeE-C-CC-cceE--EEEECC------CCCHHHHHHHHHHCCEEEeeCCccCCCCCCeEEE
Confidence 44445555566666654 222 1 22 2222 334443 457889999999999987542 233 2468999
Q ss_pred eccCCCCHHHHHHHHccCChhHHHH
Q 001989 948 EPTESESKSWTGIVMLSSPSEKKLH 972 (985)
Q Consensus 948 s~t~~~t~eeId~~~~~~~l~~~~~ 972 (985)
++. +.+|+++ ++++|+++++
T Consensus 342 s~~---~~~~~~~--l~~~L~~il~ 361 (361)
T PRK00950 342 SIG---TFEENER--FLEILKEIVE 361 (361)
T ss_pred ECC---CHHHHHH--HHHHHHHHhC
Confidence 985 8889999 7788877653
|
|
| >TIGR01364 serC_1 phosphoserine aminotransferase | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.1e-16 Score=179.41 Aligned_cols=299 Identities=9% Similarity=0.010 Sum_probs=186.0
Q ss_pred hHHHHHHHHHHHHHHHhCCCc---cceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCC-CCccc-HHHHHHCCcE
Q 001989 629 GYQEMFNNLGEWLCTITGFDS---FSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVS-AHGTN-PATAAMCGMK 703 (985)
Q Consensus 629 G~~~~~~e~~~~la~l~G~~~---~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~-~Hg~~-~~~a~~~G~~ 703 (985)
-+.++++++++.++++++.+. +.++.+||+.|+++++..+. .+++++++... .+|.. ...++..|+
T Consensus 34 ~f~~~~~~~~~~l~~l~~~~~~~~v~~~~gsgT~a~ea~~~nl~--------~~~~~~l~i~~G~fg~r~~~~a~~~g~- 104 (349)
T TIGR01364 34 EFEAVANEAESDLRELLNIPDNYEVLFLQGGATGQFAAVPLNLL--------AEGKVADYIVTGAWSKKAAKEAKKYGV- 104 (349)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCceEEEEcCCchHHHHHHHHhcC--------CCCCeEEEEECCHHHHHHHHHHHHhCC-
Confidence 345778899999999999743 34566778888877665432 24566655322 22211 223667888
Q ss_pred EEEEcCCC----CCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCC
Q 001989 704 IVSVGTDA----KGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTS 778 (985)
Q Consensus 704 vv~v~~d~----~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~ 778 (985)
++.+..++ .-.+|+++++ ++ +++++|.+++. +.+|+.. + ++++.+|++++||++++++...+ +
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~--~~---~~~~~v~~th~ETstGv~~-~-----~l~~~~~~l~iVDavss~g~~~i-d 172 (349)
T TIGR01364 105 VNVVASGKEGNYTKIPDPSTWE--IS---EDAAYVHYCANETIHGVEF-R-----ELPDVKNAPLVADMSSNILSRPI-D 172 (349)
T ss_pred cEEEeccccCCCCCCCCHHhcC--CC---CCCCEEEEcCCCCcccEec-c-----eecccCCCeEEEEccccccCccC-C
Confidence 77776542 2346666655 23 57888888885 5699987 4 56677899999999997554433 3
Q ss_pred CCccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCC---CCCCCCCCCCCCCcchhhhHHHHH
Q 001989 779 PGYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIP---APEKSQPLGTIAAAPWGSALILPI 855 (985)
Q Consensus 779 pg~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~---~~~~~~~~~~i~s~~~g~~~~~~~ 855 (985)
..+ .|++++++||+|+ .||+|++++++++++.+.+.... ..+.. ......+|+++ ..+.+
T Consensus 173 ~~~--~d~~~~ssqK~lg------P~Glg~l~~s~~~~~~~~~~~~~-~~~~~~~~~~~~~~~Tp~~--------~~i~a 235 (349)
T TIGR01364 173 VSK--FGLIYAGAQKNIG------PAGLTVVIVRKDLLGRASRITPS-MLNYKIHAENDSMYNTPPT--------FAIYV 235 (349)
T ss_pred HHH--ccEEEEecccccC------CCceEEEEECHHHHhhcccCCCC-cchHHHHHhcCCCCCCCcH--------HHHHH
Confidence 334 4699999999883 46899999998877655332110 00100 00000112222 11222
Q ss_pred HHHHHHHhcHH-HHHHHHHHHHHHHHHHHHHhhccCCe--eecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCC
Q 001989 856 SYTYIAMMGSK-GLTEASKIAILNANYMAKRLEKHYPI--LFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGF 932 (985)
Q Consensus 856 a~a~l~~lg~e-Gl~~~~~~~~~~a~~l~~~L~~g~~l--~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi 932 (985)
..++|+.+..+ |++++.++...++++++++|++..++ ....+.......+.+.+++ .+. ..++.+.+.++|+
T Consensus 236 l~~al~~l~~~gG~e~i~~r~~~l~~~l~~~l~~~~gl~~~~~~~~~rs~~v~sf~~~~----~~~-~~~~~~~~~~~Gi 310 (349)
T TIGR01364 236 SGLVFKWLKEQGGVKAIEKRNQAKAQLLYDTIDNSNGFYRNPVDPRNRSRMNVVFTLGN----EEL-EKRFLKEAEERGL 310 (349)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhCCCeeccCCCHHHcCCeEEEEecCC----hhH-hHHHHHHHHHCCC
Confidence 23556666677 68999999999999999999873223 1111111111123344331 011 2566677888999
Q ss_pred ccCCCCCCCCCEEEEeccCCCCHHHHHHHHccCChhHHHHh
Q 001989 933 HGPTMSWPVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHR 973 (985)
Q Consensus 933 ~~~~~~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~ 973 (985)
++..... ..+.+|+|+..++|+||||+ +++.|+++.++
T Consensus 311 ~~~~~~~-~~g~vRvS~~~~nt~edid~--l~~al~~~~~~ 348 (349)
T TIGR01364 311 VSLKGHR-SVGGMRASIYNAMPLEGVQA--LVDFMKEFQKK 348 (349)
T ss_pred cccCCcc-ccCeeEEECcCCCCHHHHHH--HHHHHHHHHHh
Confidence 6543321 23799999999999999999 77888886653
|
This model represents the common form of the phosphoserine aminotransferase SerC. The phosphoserine aminotransferase of the archaeon Methanosarcina barkeri and putative phosphoserine aminotransferase of Mycobacterium tuberculosis are represented by separate models. All are members of the class V aminotransferases (pfam00266). |
| >PRK08064 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=6.7e-16 Score=178.19 Aligned_cols=276 Identities=16% Similarity=0.130 Sum_probs=189.2
Q ss_pred HHHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCch-
Q 001989 211 ESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDLK- 289 (985)
Q Consensus 211 ~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~~- 289 (985)
....++++.+|++.|.+. ..++.+|++++.+++.. + ++||+||+++..|+++...+...++..|++++++|.+
T Consensus 54 p~~~~le~~lA~l~g~~~--~v~~~sG~~ai~~~l~~--l--~~Gd~Vlv~~~~y~~~~~~~~~~~~~~G~~v~~v~~~d 127 (390)
T PRK08064 54 PTREALEDIIAELEGGTK--GFAFASGMAAISTAFLL--L--SKGDHVLISEDVYGGTYRMITEVLSRFGIEHTFVDMTN 127 (390)
T ss_pred hhHHHHHHHHHHHhCCCC--eEEECCHHHHHHHHHHH--h--CCCCEEEEccCccchHHHHHHHHHHHcCCEEEEECCCC
Confidence 344567899999999874 45667888777655532 2 3899999999999988888877677789999998764
Q ss_pred --hhhc-cCCCEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCCCCCcccceEEEecC-ccccccCC
Q 001989 290 --DIDY-KSGDVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKPPGELGADIVVGSA-QRFGVPMG 364 (985)
Q Consensus 290 --~l~~-l~~~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~~~~~~GaDi~v~s~-k~lg~P~~ 364 (985)
++++ ++++|++|++++| |++|.+.|+++|.++||++|++++||. .++.+....|.++|+|+++.|+ |.+++|.+
T Consensus 128 ~~~l~~~l~~~tklV~l~~p~NptG~~~dl~~I~~la~~~g~~vvvD~-a~~~~~~~~~~~~g~Divv~S~tK~~~G~~~ 206 (390)
T PRK08064 128 LEEVAQNIKPNTKLFYVETPSNPLLKVTDIRGVVKLAKAIGCLTFVDN-TFLTPLLQKPLDLGADVVLHSATKFLAGHSD 206 (390)
T ss_pred HHHHHHhcCCCceEEEEECCCCCCcEeccHHHHHHHHHHcCCEEEEEC-CCCcccccCchhhCCcEEEeecceeccCCcc
Confidence 4555 7889999999998 789999999999999999999999953 3444544556689999999998 77664422
Q ss_pred CCCCcEEEEEEc-hhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcchH
Q 001989 365 YGGPHAAFLATS-QEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGL 443 (985)
Q Consensus 365 ~GGP~~G~l~~~-~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl 443 (985)
--+|+++++ +++.+++.... ...| ++. .+. -+ |+...|-+-+
T Consensus 207 ---~laG~~v~~~~~~~~~l~~~~-------------------------~~~g---~~~-~~~---~a--~l~~~gl~tl 249 (390)
T PRK08064 207 ---VLAGLAVVKDEELAQKLYFLQ-------------------------NSFG---AVL-GVQ---DC--WLVLRGLKTL 249 (390)
T ss_pred ---ceeEEEEeCCHHHHHHHHHHH-------------------------HhcC---CCC-CHH---HH--HHHHcccCcH
Confidence 124777775 35554441100 0001 100 111 11 1233444456
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCeE-EcCC-----C-----------CcceEEEecCCHHHHHHHHHHcCce-----ee-
Q 001989 444 KTIAQRVHGLAGTFALGLKKLGTVE-VQGL-----P-----------FFDTVKVKCADAHAIASAAYKIEMN-----LR- 500 (985)
Q Consensus 444 ~~i~~~~~~~a~~l~~~L~~~g~~~-~~~~-----~-----------~~~~~~~~~~~~~~v~~~L~~~GI~-----~~- 500 (985)
....++..+++..+.+.|++.+.+. ++-+ | +...|+|.+.+.+++.+.+...++. ++
T Consensus 250 ~~R~~~~~~~a~~la~~L~~~~~v~~v~yp~l~~~p~~~~~~~~~~g~gg~~sf~~~~~~~~~~f~~~l~l~~~~~s~G~ 329 (390)
T PRK08064 250 HVRLEHSSETANKIALYLQEHPKVQNVYYPGLQTHLGFDIQQSQATSAGAVLSFTLQSEEAVRQFVSHVKLPVFAVSLGA 329 (390)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCcceEECCCCCCCccHHHHHHhCCCcceEEEEEECCHHHHHHHHHhCCcceEcccCCC
Confidence 6777888899999999999875332 2211 1 1124777776544555555555552 11
Q ss_pred -----------------e-------ecCCeEEEEeccCCCHHHHHHHHHHHhCC
Q 001989 501 -----------------V-------VDSNTVTASFDETTTLEDVDKLFIVFAGG 530 (985)
Q Consensus 501 -----------------~-------~~~~~lris~t~~~t~edId~li~aL~~~ 530 (985)
. +.++.+|+|++..++++.|+.|.++|...
T Consensus 330 ~~sl~~~~~~~~h~~~~~~~~~~~gi~~~liR~SvGle~~~dli~dl~~Al~~~ 383 (390)
T PRK08064 330 VESILSYPAKMSHAAMPKEERDERGITDGLLRLSVGLENVDDLIADFEQALSYV 383 (390)
T ss_pred CcceeECCcccccccCCHHHHHhcCCCCCeEEEEeccCCHHHHHHHHHHHHHhc
Confidence 0 12468999999999999999999999864
|
|
| >PRK06767 methionine gamma-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=8e-16 Score=177.52 Aligned_cols=273 Identities=20% Similarity=0.147 Sum_probs=186.9
Q ss_pred HHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc---hh
Q 001989 214 LNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL---KD 290 (985)
Q Consensus 214 ~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~---~~ 290 (985)
.++++.+|+++|.+. +.++.+|++++.++++++ . ++||+||++...|+.....+...++..|+++.+++. ++
T Consensus 64 ~~Le~~lA~l~G~~~--al~~~sG~~Ai~~~l~al-~--~~Gd~Vv~~~~~y~~~~~~~~~~~~~~gi~~~~~~~~d~~~ 138 (386)
T PRK06767 64 KLFEERMAVLEGGEE--ALAFGSGMAAISATLIGF-L--KAGDHIICSNGLYGCTYGFLEVLEEKFMITHSFCDMETEAD 138 (386)
T ss_pred HHHHHHHHHHhCCCc--EEEECCHHHHHHHHHHHH-h--CCCCEEEEcCCcHHHHHHHHHHHHhhcCeEEEEeCCCCHHH
Confidence 457789999999764 667788888777766655 2 389999999999999888887766678898888764 45
Q ss_pred hhc-cCCCEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCCCCCcccceEEEecC-ccccccCCCCC
Q 001989 291 IDY-KSGDVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKPPGELGADIVVGSA-QRFGVPMGYGG 367 (985)
Q Consensus 291 l~~-l~~~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~~~~~~GaDi~v~s~-k~lg~P~~~GG 367 (985)
+++ ++++|++|++.+| |++|.+.|+++|.++||++|++++|| +.++.+....|.++|+|+++.|. |.|+++ |+
T Consensus 139 l~~~i~~~tklV~lesp~NptG~v~dl~~I~~la~~~g~~vivD-~a~a~~~~~~pl~~g~Div~~S~sK~l~g~---g~ 214 (386)
T PRK06767 139 IENKIRPNTKLIFVETPINPTMKLIDLKQVIRVAKRNGLLVIVD-NTFCSPYLQRPLELGCDAVVHSATKYIGGH---GD 214 (386)
T ss_pred HHHhhCcCceEEEEeCCCCCCceecCHHHHHHHHHHcCCEEEEE-CCCcccccCCchhcCCcEEEecCcceecCC---CC
Confidence 665 7788999999998 78999999999999999999999995 34555555566788999999998 877532 33
Q ss_pred CcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcchHHHHH
Q 001989 368 PHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIA 447 (985)
Q Consensus 368 P~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i~ 447 (985)
+-+|+++++++++.++-. ..++.-|+. .+++ .+. +...+-+-+..+.
T Consensus 215 ~~gG~v~~~~~~i~~~~~------------------------~~~~~~g~~----~~~~---~a~--l~~~~L~tl~~r~ 261 (386)
T PRK06767 215 VVAGVTICKTRALAEKIR------------------------PMRKDIGGI----MAPF---DAW--LLLRGLKTLAVRM 261 (386)
T ss_pred ceeEEEEeChHHHHHHHH------------------------HHHHHhCCC----CCHH---HHH--HHHcCCCcHHHHH
Confidence 446899988876544200 000111110 0122 122 2334444566677
Q ss_pred HHHHHHHHHHHHHHhcCCCeEEcC-C----------CCcceEEEecCC----HHHHHHHHHHcCceeee-----------
Q 001989 448 QRVHGLAGTFALGLKKLGTVEVQG-L----------PFFDTVKVKCAD----AHAIASAAYKIEMNLRV----------- 501 (985)
Q Consensus 448 ~~~~~~a~~l~~~L~~~g~~~~~~-~----------~~~~~~~~~~~~----~~~v~~~L~~~GI~~~~----------- 501 (985)
++..+++.++++.|+++.+++.+. + .....|+|..++ +.++.++|...++.++.
T Consensus 262 ~~~~~~a~~la~~L~~~p~v~~v~~p~~~~~~~~~~~~gg~vsf~l~~~~~~~~~f~~~l~~~~~~~s~G~~~sl~~~p~ 341 (386)
T PRK06767 262 DRHCDNAEKIVSFLKNHDAVEGVWYPEGELASRQMKRGGGVISFSIKGGKEETQAFINDLHFITIAVSLGDTETLIQHPA 341 (386)
T ss_pred HHHHHHHHHHHHHHHcCCCccEEECCCcHHHHHhCCCCCceEEEEEcCCHHHHHHHHHhCCccEEecCCCCcCccccCCC
Confidence 888999999999999985476432 1 112346776653 56777777665543210
Q ss_pred ----------------ecCCeEEEEeccCCCHHHHHHHHHHHh
Q 001989 502 ----------------VDSNTVTASFDETTTLEDVDKLFIVFA 528 (985)
Q Consensus 502 ----------------~~~~~lris~t~~~t~edId~li~aL~ 528 (985)
+.++.+|+|++.-+.++=|+.|-++|.
T Consensus 342 ~~~~~~~~~~~~~~~gi~~~l~R~svGlE~~~dl~~dl~~al~ 384 (386)
T PRK06767 342 TMTHAAIPAELRQEMGIYDNLIRLSVGLESWEDIVSDLEQALK 384 (386)
T ss_pred ccccccCCHHHHHhcCCCCCeEEEEeccCCHHHHHHHHHHHHh
Confidence 113578999887654444455555553
|
|
| >PRK12403 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.6e-15 Score=178.26 Aligned_cols=338 Identities=15% Similarity=0.163 Sum_probs=200.1
Q ss_pred ccccccccCCCccccccccccccccccCCCCchhhhhhHHHHHHHHHHHHHHHhCCC-ccceecCcHHHHHHHHHHHHHH
Q 001989 592 IPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFD-SFSLQPNAGAAGEYAGLMVIRA 670 (985)
Q Consensus 592 ~~lG~~t~~~~~~~~~~~~~~~~f~~~~p~~p~e~~~G~~~~~~e~~~~la~l~G~~-~~~~~~~sGa~a~~a~l~air~ 670 (985)
..||++++.+..+...+.........+.. +..+...++.+.|+++++.+ ...++.+||++|++++++++|.
T Consensus 66 ~~lGh~hp~v~~A~~~q~~~~~~~~~~~~--------~~~~~~~~lae~L~~~~p~~~~~v~f~~SGseA~e~AiklAr~ 137 (460)
T PRK12403 66 TNLGYGRKDLAAAAARQMEQLPYYNMFFH--------TTHPAVIELSELLFSLLPGHYSHAIYTNSGSEANEVLIRTVRR 137 (460)
T ss_pred hcCCCCCHHHHHHHHHHHHhCCCeecccc--------cCCHHHHHHHHHHHHhCCCCcCEEEEeCCcHHHHHHHHHHHHH
Confidence 35888877776665554422222111111 11233557889999998743 2357789999999999999998
Q ss_pred HHHhcCCCCCCEEEE-cCCCCcccHHHHHHCCcE-----------EEEEcCCCCC----C--------CCHHHHHHHHH-
Q 001989 671 YHKARGDHHRNVCII-PVSAHGTNPATAAMCGMK-----------IVSVGTDAKG----N--------INIEELRKAAE- 725 (985)
Q Consensus 671 ~~~~~g~~~~~~IIv-~~~~Hg~~~~~a~~~G~~-----------vv~v~~d~~g----~--------iD~e~L~~~i~- 725 (985)
|....|..++.+|+. ...+||.........|.+ +..+|...-. . .++++|++.+.
T Consensus 138 ~~~~~g~~~r~~ii~~~~~yHG~t~~~~s~s~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~le~~~~~ 217 (460)
T PRK12403 138 YWQVLGKPQKKIMIGRWNGYHGSTLAATALGGMKFMHEMGGLIPDVAHIDEPYWYANGGELTPAEFGRRAALQLEEKILE 217 (460)
T ss_pred HHHhhCCCCCcEEEEECCCcCcccHhhhhcCCCccccccCCCCCCCEEeCCCcccccccCCChHHHHHHHHHHHHHHHHH
Confidence 854444222344444 567899765554433321 3334321100 0 11356766664
Q ss_pred hcCCCEEEEEEEcC-CCccccccC---HHHHHHHHHHcCCEEEEEccccccccCCCCCCcc--------CCcEEEeCCcc
Q 001989 726 ANRDNLSTLMVTYP-STHGVYEEG---IDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYI--------GADVCHLNLHK 793 (985)
Q Consensus 726 ~~~~~t~~Vvv~~p-n~~G~i~~d---i~eI~~la~~~galliVD~a~~~~~~~l~~pg~~--------g~Di~~~s~hK 793 (985)
..++++++|+++.. +..|++.++ +++|.++|+++|+++|+|+++ +++++.|.+ -+|++++ .|
T Consensus 218 ~~~~~iaavI~Epv~g~gG~~~~~~~yl~~lr~lc~~~g~lLI~DEV~----tGfGRtG~~~a~e~~gv~PDiv~~--gK 291 (460)
T PRK12403 218 LGAENVAGFVAEPFQGAGGMIFPPESYWPEIQRICRQYDVLLCADEVI----GGFGRTGEWFAHEHFGFEPDTLSI--AK 291 (460)
T ss_pred hCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccc----cCCCcCchhhhhhhcCCCCCeEEE--cc
Confidence 23356888888653 346777622 999999999999999999887 445455433 2699875 37
Q ss_pred cccccCCCC-CCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHHHHHHH
Q 001989 794 TFCIPHGGG-GPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEAS 872 (985)
Q Consensus 794 ~l~~p~g~G-GPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl~~~~ 872 (985)
.++ +| .|-.|++ +++++.+.+... + + . ....+++.|+++.++++.+.|+.+..+++.
T Consensus 292 ~lg----gG~~Piga~v-~~~~i~~~~~~~--~---------~--~-~~~~~T~~gnPl~~Aaala~L~~i~~~~l~--- 349 (460)
T PRK12403 292 GLT----SGYVPMGGLV-LSKRIAEALVEQ--G---------G--V-FAHGLTYSGHPVAAAVAIANLKALRDEGVV--- 349 (460)
T ss_pred ccc----ccccceEEEE-ECHHHHHHHhcC--C---------C--c-cccCCCCCCCHHHHHHHHHHHHHHHhccHH---
Confidence 764 33 2655555 676665544211 0 0 0 001234556788888888999988776543
Q ss_pred HHHH-HHHHHHHHHhhc---cCCee--ecCCCCceeeEEEEEecC--ccccCCCC----HHHHHHHHHHCCCccCCCCCC
Q 001989 873 KIAI-LNANYMAKRLEK---HYPIL--FRGVNGTVAHEFIVDLRG--LKNTAGIE----PEDVAKRLMDYGFHGPTMSWP 940 (985)
Q Consensus 873 ~~~~-~~a~~l~~~L~~---g~~l~--~~~~~~~~~~~~iv~~~~--~~~~~g~~----~~~v~~~L~~~Gi~~~~~~~p 940 (985)
++.. ++.++|++.|++ .++++ +.+. + .+. .+.+.. ..+..... ...+.+.+.++|+.+...
T Consensus 350 ~~~~~~~g~~l~~~L~~l~~~~~~i~~vrG~-G-l~~--gie~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gll~~~~--- 422 (460)
T PRK12403 350 TRVKDDTGPYLQRCLREVFGDHPLVGEVQGA-G-LVA--ALQFAEDKATRKRFANENDLAWRCRTIGFEEGVIIRST--- 422 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCEEeEeec-c-eEE--EEEEccCccccccccchhHHHHHHHHHHHhCCEEEEec---
Confidence 3453 667788877764 23321 1121 1 221 222210 00000001 223455668899987532
Q ss_pred CCCEEEEeccCCCCHHHHHHHHccCChhHHHHhhc
Q 001989 941 VPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRLK 975 (985)
Q Consensus 941 ~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~~ 975 (985)
.+.++++|+...|++|||+ ++++++++++++.
T Consensus 423 -~~~~~l~Ppl~it~~eid~--~~~~l~~al~~~~ 454 (460)
T PRK12403 423 -LGRMIMAPALVAGRAEIDE--LVDKTRIAVDRTA 454 (460)
T ss_pred -CCEEEEECCCCCCHHHHHH--HHHHHHHHHHHHH
Confidence 2579999999999999999 8899999998763
|
|
| >PRK07986 adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated | Back alignment and domain information |
|---|
Probab=99.72 E-value=7.4e-16 Score=179.17 Aligned_cols=329 Identities=12% Similarity=0.116 Sum_probs=201.0
Q ss_pred ccccccccCCCccccccccccccccccCCCCchhhhhhHHHHHHHHHHHHHHHhCCC-ccceecCcHHHHHHHHHHHHHH
Q 001989 592 IPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFD-SFSLQPNAGAAGEYAGLMVIRA 670 (985)
Q Consensus 592 ~~lG~~t~~~~~~~~~~~~~~~~f~~~~p~~p~e~~~G~~~~~~e~~~~la~l~G~~-~~~~~~~sGa~a~~a~l~air~ 670 (985)
..||++++.+..+...+.............. +...++.+.|+++++.+ ...++.+||++|++++++.+|.
T Consensus 55 ~~lGh~~p~i~~Ai~~q~~~~~~~~~~~~~~---------~~~~~la~~L~~~~p~~~~~v~f~~SGsEAve~AlklAr~ 125 (428)
T PRK07986 55 AIHGYNHPQLNAAMKSQIDAMSHVMFGGITH---------PPAIELCRKLVAMTPQPLECVFLADSGSVAVEVAMKMALQ 125 (428)
T ss_pred hcCCCCCHHHHHHHHHHHhhcCCccccccCC---------HHHHHHHHHHHhhCCCCcCEEEEeCCcHHHHHHHHHHHHH
Confidence 4678887766655544432211111000011 22346778888887532 2357789999999999999998
Q ss_pred HHHhcCCCCCCEEEE-cCCCCcccHHHHHHCC-------------cEEEEEcCCCC------CCCCHHHHHHHHHhcCCC
Q 001989 671 YHKARGDHHRNVCII-PVSAHGTNPATAAMCG-------------MKIVSVGTDAK------GNINIEELRKAAEANRDN 730 (985)
Q Consensus 671 ~~~~~g~~~~~~IIv-~~~~Hg~~~~~a~~~G-------------~~vv~v~~d~~------g~iD~e~L~~~i~~~~~~ 730 (985)
|...+| .++.+||. ...+||....+....+ -.+..+|.... ...|++++++.++++.++
T Consensus 126 ~~~~~g-~~r~kii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~d~~~l~~~l~~~~~~ 204 (428)
T PRK07986 126 YWQAKG-EPRQRFLTLRHGYHGDTFGAMSVCDPDNSMHSLYKGYLPENLFAPAPQSRFDGEWDERDIAPFARLMAAHRHE 204 (428)
T ss_pred HHHhcC-CCCcEEEEECCCcCCCcHhhhcccCCchhhhhccCCCCCCCEEECCCCcccchhhHHHHHHHHHHHHHhCCCc
Confidence 765444 24566775 6789997644432211 01223332110 124678889888755567
Q ss_pred EEEEEEEcC-C-Ccccccc---CHHHHHHHHHHcCCEEEEEccccccccCCCCCCcc--------CCcEEEeCCcccccc
Q 001989 731 LSTLMVTYP-S-THGVYEE---GIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYI--------GADVCHLNLHKTFCI 797 (985)
Q Consensus 731 t~~Vvv~~p-n-~~G~i~~---di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~--------g~Di~~~s~hK~l~~ 797 (985)
+++|+++.. . ..|++.+ .+++|.++|+++|+++|+|++| .++ ++.|.+ .+|++++ .|.+
T Consensus 205 iaavi~Epi~~g~gg~~~~~~~~L~~l~~lc~~~g~lLI~DEv~-tG~---GrtG~~fa~~~~gv~PDi~t~--gK~l-- 276 (428)
T PRK07986 205 IAAVILEPIVQGAGGMRIYHPEWLKRVRKLCDREGILLIADEIA-TGF---GRTGKLFACEHAGIAPDILCL--GKAL-- 276 (428)
T ss_pred EEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEeccc-cCC---ccCCCeeeecccCCCCCEEEe--chhh--
Confidence 888888752 3 3454431 3899999999999999999987 233 334322 2688865 3766
Q ss_pred cCCCCC-CceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHHHHHHHHHHH
Q 001989 798 PHGGGG-PGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAI 876 (985)
Q Consensus 798 p~g~GG-Pg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl~~~~~~~~ 876 (985)
+ || --+|.+++++++.+.+.....+ . ....+++.|+++.++++.+.|+.+.++++ .++..
T Consensus 277 --~-gG~~p~~av~~~~~i~~~~~~~~~~------------~-~~~~~T~~g~p~~~aaa~a~L~~i~~~~~---~~~~~ 337 (428)
T PRK07986 277 --T-GGTMTLSATLTTREVAETISNGEAG------------C-FMHGPTFMGNPLACAVANASLSLLESGDW---QQQVA 337 (428)
T ss_pred --h-CCcccCcchhchHHHHHHhhcCCCC------------c-cccCCCCCcCHHHHHHHHHHHHHHHhCCH---HHHHH
Confidence 3 34 2244555676666554321000 0 00112345677888888888988876654 45667
Q ss_pred HHHHHHHHHhhcc--CCee--ecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCCCCCCCEEEEeccCC
Q 001989 877 LNANYMAKRLEKH--YPIL--FRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTES 952 (985)
Q Consensus 877 ~~a~~l~~~L~~g--~~l~--~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~~p~~~~lris~t~~ 952 (985)
++.++|++.|++. +..+ +.+. ..+ ..+.+.. ......+.+.|.++|+++... .+.+|++|+..
T Consensus 338 ~~g~~l~~~l~~l~~~~~i~~vRg~--Gl~--~~ve~~~-----~~~~~~~~~~l~~~Gl~~~~~----g~~i~~~Ppl~ 404 (428)
T PRK07986 338 AIEAQLREELAPLRDAPMVADVRVL--GAI--GVVETTR-----PVNMAALQRFFVEQGVWIRPF----GKLIYLMPPYI 404 (428)
T ss_pred HHHHHHHHHHHHHhcCCCEEeEecc--ceE--EEEEeCC-----cccHHHHHHHHHHCCcEEEec----CCEEEEeCCCC
Confidence 7788888888752 2211 1111 122 2233321 124568899999999987533 36899999999
Q ss_pred CCHHHHHHHHccCChhHHHH
Q 001989 953 ESKSWTGIVMLSSPSEKKLH 972 (985)
Q Consensus 953 ~t~eeId~~~~~~~l~~~~~ 972 (985)
.|++|||+ ++++|.++++
T Consensus 405 it~~ei~~--~~~~l~~~l~ 422 (428)
T PRK07986 405 ILPEQLQR--LTAAVNRAVQ 422 (428)
T ss_pred CCHHHHHH--HHHHHHHHHh
Confidence 99999999 7788888874
|
|
| >PRK05965 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.5e-15 Score=178.53 Aligned_cols=343 Identities=15% Similarity=0.146 Sum_probs=207.4
Q ss_pred ccccccccCCCccccccccccccccccCCCCchhhhhhHHHHHHHHHHHHHHHhCCCc-cceecCcHHHHHHHHHHHHHH
Q 001989 592 IPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFDS-FSLQPNAGAAGEYAGLMVIRA 670 (985)
Q Consensus 592 ~~lG~~t~~~~~~~~~~~~~~~~f~~~~p~~p~e~~~G~~~~~~e~~~~la~l~G~~~-~~~~~~sGa~a~~a~l~air~ 670 (985)
..+|++++.+..+...+..........+.+.. +...++.+.|++++..+. ..++.+||++|++++++.+|.
T Consensus 58 ~~lGh~~p~i~~Ai~~q~~~~~~~~~~~~~~~--------~~~~~lae~L~~~~p~~~~~v~f~~sGSEAve~AlKlAr~ 129 (459)
T PRK05965 58 VNVGYGQESIVEAAAEQMRELPYATGYFHFGS--------EPAIRLAAKLAERAPGSLNHVYFTLGGSDAVDSAVRFIRH 129 (459)
T ss_pred ccCCCCCHHHHHHHHHHHHhcCCcccccccCC--------HHHHHHHHHHHhhCCCCcCEEEEeCChhHHHHHHHHHHHH
Confidence 46788877777665554422111111111111 223467788888874222 346678999999999999998
Q ss_pred HHHhcCCCCCCEEEE-cCCCCcccHHHHHHC---------C---cEEEEEcCCCC----CCCC--------HHHHHHHHH
Q 001989 671 YHKARGDHHRNVCII-PVSAHGTNPATAAMC---------G---MKIVSVGTDAK----GNIN--------IEELRKAAE 725 (985)
Q Consensus 671 ~~~~~g~~~~~~IIv-~~~~Hg~~~~~a~~~---------G---~~vv~v~~d~~----g~iD--------~e~L~~~i~ 725 (985)
|...+|..++.+||. ..++||....+.... | -.+..+|.... ...| ++++++.++
T Consensus 130 ~~~~~g~~~r~kii~~~~~YHG~t~~a~s~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~ 209 (459)
T PRK05965 130 YWNATGRPSKKQFISLERGYHGSSSVGAGLTALPAFHRGFDLPLPWQHKIPSPYPYRNPVGDDPQAIIAASVAALRAKVA 209 (459)
T ss_pred HHHhcCCCCccEEEEecCCcCcccHHHHHhcCCchhhcccCCCCCCCEEcCCCcccccccCCChHHHHHHHHHHHHHHHH
Confidence 865555334567775 678999764432211 1 01233432110 1123 367888886
Q ss_pred hcC-CCEEEEEEEcC-CCcccccc---CHHHHHHHHHHcCCEEEEEccccccccCCCCCCcc--------CCcEEEeCCc
Q 001989 726 ANR-DNLSTLMVTYP-STHGVYEE---GIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYI--------GADVCHLNLH 792 (985)
Q Consensus 726 ~~~-~~t~~Vvv~~p-n~~G~i~~---di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~--------g~Di~~~s~h 792 (985)
++. +++++|+++-. ...|++.+ -+++|.++|+++|+++|+|+++ .|+.+.|.+ -+|+++++
T Consensus 210 ~~~~~~iAAvIvEPiqg~gG~~~p~~~yl~~lr~lc~~~gillI~DEV~----tGfGRtG~~~a~~~~gv~PDiv~~g-- 283 (459)
T PRK05965 210 ELGADNVAAFFCEPIQGSGGVIVPPKGWLKAMREACRELGILFVADEVI----TGFGRTGPLFACEAEGVVPDLMTVA-- 283 (459)
T ss_pred hcCCCceEEEEEeccccCCCCccCCHHHHHHHHHHHHHcCCEEEEechh----ccCccCchhhhHhhcCCCCCeEEec--
Confidence 543 57889988753 34566542 3899999999999999999876 455555543 27999874
Q ss_pred ccccccCCCCC-CceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHHHHHH
Q 001989 793 KTFCIPHGGGG-PGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEA 871 (985)
Q Consensus 793 K~l~~p~g~GG-Pg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl~~~ 871 (985)
|.++ +|- | +|.+++++++.+.+.... . . .......+++.|+++.++++.+.|..+.++++.
T Consensus 284 Kgl~----gG~~P-i~av~~~~~i~~~~~~~~--~--------~-~~~~~h~~T~~gnpl~~Aaa~a~L~~l~~~~l~-- 345 (459)
T PRK05965 284 KGLT----SGYVP-MGAVLMSDHVYQGIADGA--G--------A-AAPVGHGYTYSAHPVSAAVGLEVLRLYHEGGLL-- 345 (459)
T ss_pred hhhc----cCCcc-eeEEEEcHHHHHHHhccc--c--------c-cccccccCCCCCCHHHHHHHHHHHHHHHhccHH--
Confidence 7763 331 5 566667877665432110 0 0 000012235667888888899999988776554
Q ss_pred HHHHHHHHHHHHHHhhcc--CCee--ecCCCCceeeEEEEEecC---ccccCCC---CHHHHHHHHHHCCCccCCCCCCC
Q 001989 872 SKIAILNANYMAKRLEKH--YPIL--FRGVNGTVAHEFIVDLRG---LKNTAGI---EPEDVAKRLMDYGFHGPTMSWPV 941 (985)
Q Consensus 872 ~~~~~~~a~~l~~~L~~g--~~l~--~~~~~~~~~~~~iv~~~~---~~~~~g~---~~~~v~~~L~~~Gi~~~~~~~p~ 941 (985)
++..+..++|.++|++. ..++ +.+. + .+. .+.+.. .+..... -...+.+.+.++|+++....
T Consensus 346 -~~~~~~g~~l~~~l~~l~~~~~v~~vrG~-G-l~~--gie~~~~~~~~~~~~~~~~~~~~i~~~~~~~Gll~~~~g--- 417 (459)
T PRK05965 346 -ANGQKAGPRFAAGLDALRAHPLVGDVRGR-G-LLG--ALELVADKATKTPFDAALDPADRIFDRAYANGLVFRAFG--- 417 (459)
T ss_pred -HHHHHHHHHHHHHHHhhccCCCEEEEeec-c-eEE--EEEEeccccccCCCCchhHHHHHHHHHHHhCCeEEEecC---
Confidence 35667788888888652 2211 1111 1 121 222210 0000000 13467778889999885432
Q ss_pred CCEEEEeccCCCCHHHHHHHHccCChhHHHHhhcc
Q 001989 942 PGTLMIEPTESESKSWTGIVMLSSPSEKKLHRLKM 976 (985)
Q Consensus 942 ~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~~~ 976 (985)
.+.||++|+...|++|||+ +++++.+++.++.+
T Consensus 418 ~~~i~~~PpL~it~~ei~~--~~~~l~~~l~~~~~ 450 (459)
T PRK05965 418 DGVLGFAPALCCTEGEFDL--IFERTRKTLDDVLA 450 (459)
T ss_pred CcEEEEECCCcCCHHHHHH--HHHHHHHHHHHHhc
Confidence 3679999999999999999 88999999887644
|
|
| >PRK07682 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=99.72 E-value=5.2e-16 Score=179.05 Aligned_cols=302 Identities=12% Similarity=0.117 Sum_probs=193.5
Q ss_pred hhHHHHHHHHHHHHHHHhCCC--cc-ceec-CcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcE
Q 001989 628 QGYQEMFNNLGEWLCTITGFD--SF-SLQP-NAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMK 703 (985)
Q Consensus 628 ~G~~~~~~e~~~~la~l~G~~--~~-~~~~-~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~ 703 (985)
+|..++.+.+.+++.+.+|.+ .. .+.. +++++|...++ +.+. +++++|+++++.|+.+...++..|.+
T Consensus 57 ~g~~~lr~~ia~~~~~~~g~~~~~~~~i~~t~G~~~al~~~~---~~l~-----~~gd~vl~~~p~y~~~~~~~~~~g~~ 128 (378)
T PRK07682 57 AGLLELRQEIAKYLKKRFAVSYDPNDEIIVTVGASQALDVAM---RAII-----NPGDEVLIVEPSFVSYAPLVTLAGGV 128 (378)
T ss_pred CCcHHHHHHHHHHHHHHhCCCCCCCCcEEEeCChHHHHHHHH---HHhC-----CCCCEEEEeCCCchhhHHHHHHcCCE
Confidence 577777777777777766653 22 3444 44455554333 3321 47789999988777777778889999
Q ss_pred EEEEcCCC--CCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccc--cCHHHHHHHHHHcCCEEEEEccccccc-cC-C
Q 001989 704 IVSVGTDA--KGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYE--EGIDEICKIIHDNGGQVYMDGANMNAQ-VG-L 776 (985)
Q Consensus 704 vv~v~~d~--~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~--~di~eI~~la~~~galliVD~a~~~~~-~~-l 776 (985)
++.++.+. ++.+|+++|++++. +++++|++++| |++|.+. .++++|.++|+++|+++++|.++.... .+ .
T Consensus 129 ~~~~~~~~~~~~~~d~~~l~~~~~---~~~~~v~~~~p~NPtG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~ 205 (378)
T PRK07682 129 PVPVATTLENEFKVQPAQIEAAIT---AKTKAILLCSPNNPTGAVLNKSELEEIAVIVEKHDLIVLSDEIYAELTYDEAY 205 (378)
T ss_pred EEEeecCCccCCCCCHHHHHhhcC---cccEEEEEECCCCCcCcCcCHHHHHHHHHHHHHcCcEEEEehhhhhcccCCCC
Confidence 99998753 46899999999987 68899999999 5799885 258999999999999999999874211 00 0
Q ss_pred C----CCCccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHH
Q 001989 777 T----SPGYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALI 852 (985)
Q Consensus 777 ~----~pg~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~ 852 (985)
. .++...-.+++.|++|+|++| |.++|++++++++.+.+.... .....+.+ ...
T Consensus 206 ~~~~~~~~~~~~~i~~~S~SK~~~~~----GlR~G~~~~~~~~i~~l~~~~--------------~~~~~~~~----~~~ 263 (378)
T PRK07682 206 TSFASIKGMRERTILISGFSKGFAMT----GWRLGFIAAPVYFSEAMLKIH--------------QYSMMCAP----TMA 263 (378)
T ss_pred CChhhcccccCCEEEEecCcccccCh----hhhhhhhhcCHHHHHHHHHHH--------------HhhccCCC----HHH
Confidence 0 011112357788889998654 567999999877665442110 00011111 111
Q ss_pred HHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHH-HC
Q 001989 853 LPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLM-DY 930 (985)
Q Consensus 853 ~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~-~~ 930 (985)
..++..+|. -+.+.+++..+...++++++.+.|++ ++++ ..+.+.++ +.+.++. .+.+..++++.|. ++
T Consensus 264 q~a~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~--~~p~g~~~--~~~~~~~----~~~~~~~~~~~ll~~~ 334 (378)
T PRK07682 264 QFAALEALR-AGNDDVIRMRDSYRKRRNFFVTSFNEIGLTC--HVPGGAFY--AFPSISS----TGLSSEEFAEQLLLEE 334 (378)
T ss_pred HHHHHHHHh-CChHHHHHHHHHHHHHHHHHHHHHHHCCCcc--CCCCeeEE--EEEeccC----CCCCHHHHHHHHHHhC
Confidence 122223332 23334555566677888899999987 4443 22223222 2233321 1356788998876 67
Q ss_pred CCccCCC-CCC--CCCEEEEeccCCCCHHHHHHHHccCChhHHHHhhc
Q 001989 931 GFHGPTM-SWP--VPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRLK 975 (985)
Q Consensus 931 Gi~~~~~-~~p--~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~~ 975 (985)
|+.+... .|. .++++||++.. +.+++++ .++.|++++++.|
T Consensus 335 gv~v~pg~~f~~~~~~~iRis~~~--~~~~l~~--~l~~l~~~l~~~~ 378 (378)
T PRK07682 335 KVAVVPGSVFGESGEGFIRCSYAT--SLEQLQE--AMKRMKRFVENKK 378 (378)
T ss_pred CEEEcCchhhCcCCCCeEEEEeCC--CHHHHHH--HHHHHHHHHhhcC
Confidence 9987532 222 25899999974 6899999 7788888877653
|
|
| >COG0161 BioA Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.8e-16 Score=177.54 Aligned_cols=355 Identities=14% Similarity=0.131 Sum_probs=224.3
Q ss_pred CHHHHHHHHHHHhccccCcccccccccccccCCCccccccccccccccccCCCCchhhhhhHHHHHHHHHHHHHHHhCCC
Q 001989 569 TEHELLRYIHLLQSKELSLCHSMIPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFD 648 (985)
Q Consensus 569 se~e~~~~l~~l~~~~~~~~~~~~~lG~~t~~~~~~~~~~~~~~~~f~~~~p~~p~e~~~G~~~~~~e~~~~la~l~G~~ 648 (985)
-+.+..++|+.+++-= .+..|++.+.++.+...|....+.. +++.- .+ +...++.++|+++..-.
T Consensus 39 ~d~~G~r~lDg~sg~W------~~~~Gh~~~~i~~Ai~~Q~~~l~~~---~~~~~----t~--~Pa~~LA~~L~~~aP~~ 103 (449)
T COG0161 39 TDIDGRRYLDGMSGLW------CVNHGHGRPEIAEAIKKQLDKLPHV---MFGGF----TH--EPAIELAEKLAELAPEG 103 (449)
T ss_pred EeCCCCEEEecccHHH------HhhcCcCCHHHHHHHHHHHHhCCch---hhccc----CC--chHHHHHHHHHHhCCCC
Confidence 3344556666555421 2357999888888877776443322 11110 01 11347889999998722
Q ss_pred -c-cceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEE-cCCCCcccHHHHHHCC-------------cEEEEEcCCC-
Q 001989 649 -S-FSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCII-PVSAHGTNPATAAMCG-------------MKIVSVGTDA- 711 (985)
Q Consensus 649 -~-~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv-~~~~Hg~~~~~a~~~G-------------~~vv~v~~d~- 711 (985)
- ..|+.+|||+|++++++.++.|++.+|...+.++|. ...+||....+....| ..+..+|...
T Consensus 104 ~l~~vFf~~sGSeAvEtAlKma~qY~~~~G~p~r~~~Isr~~gYHG~T~ga~Sv~g~~~~~~~~~~~ll~~~~~~~~P~~ 183 (449)
T COG0161 104 GLDHVFFTDSGSEAVETALKMALQYWRARGQPQRKKFISRRNGYHGDTLGAMSVGGPVALRHAFYDPLLPEVLHLPAPYA 183 (449)
T ss_pred CccEEEEeCCchHHHHHHHHHHHHHHHhcCCCcceEEEEeccCcCcccchheeccCchhhhhhhccccccCceecCCCcc
Confidence 2 247789999999999999999999998655666776 6789997654432222 1233444321
Q ss_pred -----CCC------CCHHHHHHHHHhcC-CCEEEEEEEcC-C-Ccccccc---CHHHHHHHHHHcCCEEEEEcccccccc
Q 001989 712 -----KGN------INIEELRKAAEANR-DNLSTLMVTYP-S-THGVYEE---GIDEICKIIHDNGGQVYMDGANMNAQV 774 (985)
Q Consensus 712 -----~g~------iD~e~L~~~i~~~~-~~t~~Vvv~~p-n-~~G~i~~---di~eI~~la~~~galliVD~a~~~~~~ 774 (985)
++. -..++|+++|.++. +++++++++-- . ..|++.+ -++++.++|++||+++|+|++ ..
T Consensus 184 y~~~~~~~~~~~~~~~a~~le~~i~~~g~~~IAAfI~EPv~g~agG~~~pp~~Yl~~vr~iC~ky~ILlI~DEV----~t 259 (449)
T COG0161 184 YRRGFFGEGDEEFAEAADELEALILEHGPETIAAFIVEPVVGGAGGMLVPPPGYLKRVREICDKYGILLIADEV----AT 259 (449)
T ss_pred cccCCCCCChHHHHHHHHHHHHHHHhcCcccEEEEEecccccccCCcccCChHHHHHHHHHHHHcCcEEEeecc----ee
Confidence 111 23678888888776 56667766532 2 3666653 289999999999999999965 57
Q ss_pred CCCCCCccC--------CcEEEeCCcccccccCCCC-CCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCc
Q 001989 775 GLTSPGYIG--------ADVCHLNLHKTFCIPHGGG-GPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAA 845 (985)
Q Consensus 775 ~l~~pg~~g--------~Di~~~s~hK~l~~p~g~G-GPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~ 845 (985)
||+++|.+. +|+++.+ |.+.. | -| +|.+.+++++.+.+.....+ .+ ....+
T Consensus 260 GFGRTG~~FA~e~~gi~PDi~~~a--KGLT~----GY~P-l~a~l~~~~I~~~~~~~~~~------------~f-~HG~T 319 (449)
T COG0161 260 GFGRTGKMFACEHAGIVPDILCLA--KGLTG----GYLP-LSAVLTSDRIYEAFSDGDAG------------AF-MHGHT 319 (449)
T ss_pred CCCcCchhhhhhhcCCCCCeeeec--ccccc----cchh-hHhHhhhHHHHHHHhcccCC------------ee-ccCCc
Confidence 788887653 6999874 87742 2 24 34344455544332211000 01 11123
Q ss_pred chhhhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc-cC--CeeecCCCCceeeEEEEEecCccccCCCC---
Q 001989 846 PWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK-HY--PILFRGVNGTVAHEFIVDLRGLKNTAGIE--- 919 (985)
Q Consensus 846 ~~g~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~--~l~~~~~~~~~~~~~iv~~~~~~~~~g~~--- 919 (985)
+.|++++|++|.+.|..+.++++.+ +..+...+|.++|++ .. ..+-.-..... ...+.+.. +.....
T Consensus 320 YsghPlacAaAla~L~i~e~e~l~~---~~~~~~~~l~~~L~~~l~~~p~VgdVR~~Gl--i~~iElv~--d~~t~~~f~ 392 (449)
T COG0161 320 YSGNPLACAAALANLDILEEEDLLE---RVAEIGAYLQAGLQAALADHPLVGDVRGLGL--IGAIELVA--DKATKTPFE 392 (449)
T ss_pred cccCHHHHHHHHHHHHHHHhcCHHH---HHHHHHHHHHHHHHHhcccCCcEEEeeccce--EEEEEEec--ccccccchh
Confidence 5568899999999999998887765 556788899999885 22 12110000011 12233221 001111
Q ss_pred ---HHHHHHHHHHCCCccCCCCCCCCCEEEEeccCCCCHHHHHHHHccCChhHHHHhhc
Q 001989 920 ---PEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRLK 975 (985)
Q Consensus 920 ---~~~v~~~L~~~Gi~~~~~~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~~ 975 (985)
...+.+.+.++|+++.++ .+.+-++|+...|++|||+ +++++.+.+++..
T Consensus 393 ~~~~~~~~~~~~e~Gl~iRp~----g~~i~~~PPliit~~eid~--l~~~l~~al~~~~ 445 (449)
T COG0161 393 ARVGARVRAAALERGLLIRPL----GDVIYLMPPLIITREEIDE--LVDALREALDETL 445 (449)
T ss_pred hhHHHHHHHHHHHCCeEEeec----CCEEEEcCCccCCHHHHHH--HHHHHHHHHHHHH
Confidence 567888889999998655 3799999999999999999 8888988887643
|
|
| >PRK13360 omega amino acid--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.5e-15 Score=177.57 Aligned_cols=337 Identities=16% Similarity=0.159 Sum_probs=200.9
Q ss_pred ccccccccCCCccccccccccccccccCCCCchhhhhhHHHHHHHHHHHHHHHhC--CCccceecCcHHHHHHHHHHHHH
Q 001989 592 IPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITG--FDSFSLQPNAGAAGEYAGLMVIR 669 (985)
Q Consensus 592 ~~lG~~t~~~~~~~~~~~~~~~~f~~~~p~~p~e~~~G~~~~~~e~~~~la~l~G--~~~~~~~~~sGa~a~~a~l~air 669 (985)
..||++++.+..+...+.........+.-.. +...++.+.+++++. .+ ..++.+||++|++++++.+|
T Consensus 58 ~~lGh~~p~v~~ai~~ql~~l~~~~~~~~~~---------~~~~~la~~l~~~~p~~~~-~v~f~~sGseA~e~AlklAr 127 (442)
T PRK13360 58 VNAGHGRPEIVEAVRAQAGELDYAPAFQMGH---------PKAFELANRIAEIAPGGLN-HVFFTNSGSESVDTALKIAL 127 (442)
T ss_pred hccCCCCHHHHHHHHHHHHhCCCcccCCcCC---------HHHHHHHHHHHHhCCCCCC-EEEEeCCcHHHHHHHHHHHH
Confidence 4578887777766554432211111111111 223477788888873 33 34678999999999999999
Q ss_pred HHHHhcCCCCCCEEEE-cCCCCcccHHHHHHCC------------cEEEEEcCCCC-----CC--------CCHHHHHHH
Q 001989 670 AYHKARGDHHRNVCII-PVSAHGTNPATAAMCG------------MKIVSVGTDAK-----GN--------INIEELRKA 723 (985)
Q Consensus 670 ~~~~~~g~~~~~~IIv-~~~~Hg~~~~~a~~~G------------~~vv~v~~d~~-----g~--------iD~e~L~~~ 723 (985)
.|...+|..++.+||. ..++||....+....| -.+..+|...+ .. -++++|+++
T Consensus 128 ~~~~~~g~~~r~~ii~~~~~yHG~t~gals~tg~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~le~~ 207 (442)
T PRK13360 128 AYHRARGEGSRTRLIGRERGYHGVGFGGISVGGIVPNRKAFGALLPGVDHLPHTLDLARNAFSKGQPEHGAELADELERL 207 (442)
T ss_pred HHHHhcCCCCCcEEEEEcCCcCCccHhhhhccCChhhhhccCCCCCCCEEeCCCchhhccccCCChHHHHHHHHHHHHHH
Confidence 8754444223556775 6789997654332111 12334444211 00 025688888
Q ss_pred HHhc-CCCEEEEEEEcC-CCccccccC----HHHHHHHHHHcCCEEEEEccccccccCCCCCCcc--------CCcEEEe
Q 001989 724 AEAN-RDNLSTLMVTYP-STHGVYEEG----IDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYI--------GADVCHL 789 (985)
Q Consensus 724 i~~~-~~~t~~Vvv~~p-n~~G~i~~d----i~eI~~la~~~galliVD~a~~~~~~~l~~pg~~--------g~Di~~~ 789 (985)
+..+ .+++++|+++.. ...|.+. + +++|.++|+++|+++|+|++|. |+++.|.+ .+|++++
T Consensus 208 l~~~~~~~~aavivEpi~g~~G~~~-~~~~fl~~lr~lc~~~g~llI~DEv~t----G~GrtG~~~a~~~~gv~PDivt~ 282 (442)
T PRK13360 208 VTLHDASTIAAVIVEPVAGSTGVLI-PPKGYLQRLREICDKHGILLIFDEVIT----GFGRLGAPFAAQYFGVTPDLLTC 282 (442)
T ss_pred HHhcCCCcEEEEEEccccCCCCCcc-CCHHHHHHHHHHHHHcCCEEEEechhh----CCCCCccchhhhhcCCCCceeee
Confidence 8643 256788887653 3467775 5 9999999999999999999873 23333322 2688866
Q ss_pred CCcccccccCCCC-CCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHHH
Q 001989 790 NLHKTFCIPHGGG-GPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGL 868 (985)
Q Consensus 790 s~hK~l~~p~g~G-GPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl 868 (985)
.|.++ +| -|- |.+.+++++.+.+..... . .... -..+++.|+++.++++.+.|+.+..+++
T Consensus 283 --gK~l~----gG~~P~-gav~~~~~i~~~~~~~~~---~-------~~~~-~~~~T~~g~pl~~aaa~a~L~~l~~~~l 344 (442)
T PRK13360 283 --AKGLT----NGAIPM-GAVFVSSEIHDAFMQGPE---A-------GIEF-FHGYTYSGHPLACAAALATLDLYEREGL 344 (442)
T ss_pred --eeccc----cCccce-EEEEEcHHHHHHhhcCCc---c-------cccc-ccCCCCCCCHHHHHHHHHHHHHHHhCCH
Confidence 37763 33 254 446667776554321100 0 0000 0112445677778888888988877654
Q ss_pred HHHHHHHHHHHHHHHHHhhcc--CCeee--cCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCCCCCCCE
Q 001989 869 TEASKIAILNANYMAKRLEKH--YPILF--RGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGT 944 (985)
Q Consensus 869 ~~~~~~~~~~a~~l~~~L~~g--~~l~~--~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~~p~~~~ 944 (985)
. ++..++.+++++.|++. +..+. .+. + .+..+.+... .........++.++|.++|+++... .+.
T Consensus 345 ~---~~~~~~g~~l~~~l~~l~~~~~v~~vrG~-G-l~~~~~l~~~--~~~~~~~~~~~~~~l~~~Gvl~~~~----~~~ 413 (442)
T PRK13360 345 L---TRAARLAPYWEDALHSLRDAPHVIDIRNL-G-LVGAVELAPR--DGKPGKRAYEVFLKCFEKGLMIRYT----GDI 413 (442)
T ss_pred H---HHHHHHHHHHHHHHHHhhcCCCeeeeecc-c-eEEEEEEecC--CCCcchhHHHHHHHHHHCCcEEEec----CCE
Confidence 4 46667788888888751 22211 111 1 1211212111 0000113467888899999988533 368
Q ss_pred EEEeccCCCCHHHHHHHHccCChhHHHHhh
Q 001989 945 LMIEPTESESKSWTGIVMLSSPSEKKLHRL 974 (985)
Q Consensus 945 lris~t~~~t~eeId~~~~~~~l~~~~~~~ 974 (985)
+|++|+..+|++|||+ ++++|++++.++
T Consensus 414 lr~~Ppl~~t~~eid~--~~~~l~~~l~~~ 441 (442)
T PRK13360 414 LALSPPLIIEEAQIDE--LFDILAQALKET 441 (442)
T ss_pred EEEeCCCccCHHHHHH--HHHHHHHHHHHh
Confidence 9999999999999999 889998888653
|
|
| >PRK06916 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=9.2e-16 Score=180.32 Aligned_cols=346 Identities=12% Similarity=0.111 Sum_probs=211.2
Q ss_pred ccccccccCCCccccccccccccccccCCCCchhhhhhHHHHHHHHHHHHHHHhCCC-ccceecCcHHHHHHHHHHHHHH
Q 001989 592 IPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFD-SFSLQPNAGAAGEYAGLMVIRA 670 (985)
Q Consensus 592 ~~lG~~t~~~~~~~~~~~~~~~~f~~~~p~~p~e~~~G~~~~~~e~~~~la~l~G~~-~~~~~~~sGa~a~~a~l~air~ 670 (985)
..||+|++.+..+...+.............. +...++.+.|++++... ...++.+||++|++++++.+|.
T Consensus 68 ~~lGh~~p~v~~Ai~~ql~~l~~~~~~~~~~---------~~~~~lae~L~~~~p~~~~~v~f~~SGseAve~AlklAr~ 138 (460)
T PRK06916 68 NVHGHQVPELDEAIREQLNKIAHSTLLGLAN---------VPSILLAEKLIEVVPEGLKKVFYSDSGATAVEIAIKMAFQ 138 (460)
T ss_pred hhcCCCCHHHHHHHHHHHHhCCCccccccCC---------HHHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHHHHH
Confidence 3578888887766555542211111111011 22346778888887532 2457789999999999999998
Q ss_pred HHHhcCCCCCCEEEE-cCCCCcccHHHHHHCC------------cEEEEEcCCCC-----C-------CCCHHHHHHHHH
Q 001989 671 YHKARGDHHRNVCII-PVSAHGTNPATAAMCG------------MKIVSVGTDAK-----G-------NINIEELRKAAE 725 (985)
Q Consensus 671 ~~~~~g~~~~~~IIv-~~~~Hg~~~~~a~~~G------------~~vv~v~~d~~-----g-------~iD~e~L~~~i~ 725 (985)
|...+|.+++.+||. ...+||....+....| ..+..+|.... + ..|++++++.++
T Consensus 139 ~~~~~g~tgr~~ii~~~~~YHG~t~~als~s~~~~~~~~~~~~~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~l~~~l~ 218 (460)
T PRK06916 139 YWQNKGKPKKQRFVTLKNAYHGDTIGAVSVGAIDLFHQVYSSLLFEAIKMPYPYTYRSPYGNDKAEIVKKHLEELEELLK 218 (460)
T ss_pred HHHhcCCCCCcEEEEECCcCCcccHHhHhccCCcccccccCCCCCCCEEeCCCcccccccCCChHHHHHHHHHHHHHHHH
Confidence 765555444567765 6789997755543322 12333443210 0 124677888887
Q ss_pred hcCCCEEEEEEEc-C-CCcccccc---CHHHHHHHHHHcCCEEEEEccccccccCCCCCCcc--------CCcEEEeCCc
Q 001989 726 ANRDNLSTLMVTY-P-STHGVYEE---GIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYI--------GADVCHLNLH 792 (985)
Q Consensus 726 ~~~~~t~~Vvv~~-p-n~~G~i~~---di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~--------g~Di~~~s~h 792 (985)
++.+++++|+++- . ...|++.+ -+++|.++|+++|+++|+|+++ .|+.+.|.+ .+|+++++
T Consensus 219 ~~~~~iAAvi~EP~iqg~gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~----TG~GRtG~~~a~~~~gv~PDiv~~g-- 292 (460)
T PRK06916 219 EKHEEIAAIIVEPLVQGAGGMITMPKGYLKGLRNLCTKYNVLFITDEVA----TGFGRTGKMFACEHENVTPDIMTAG-- 292 (460)
T ss_pred hCCCcEEEEEEeccccCCCCcccCCHHHHHHHHHHHHHcCCEEEeechh----hCCCcCchhhHHHhcCCCCCeeeee--
Confidence 6667899999876 3 34566542 3899999999999999999886 334455533 27998763
Q ss_pred ccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHHHHHHH
Q 001989 793 KTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEAS 872 (985)
Q Consensus 793 K~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl~~~~ 872 (985)
|.+ ++|-.-+|.+++++++.+.+....-.. .. ....+++.|+++.++++.+.|..+..+++.
T Consensus 293 K~l----~gG~~Pi~av~~~~ei~~~~~~~~~~~----------~~-~~~~~T~~gnpl~~aaa~a~l~~l~~~~l~--- 354 (460)
T PRK06916 293 KGL----TGGYLPIAITVTTDEIYNAFYGDYEEQ----------KT-FFHGHSYTGNPLGCAVALANLELYEKTNLI--- 354 (460)
T ss_pred hhh----hcCccccceeeecHHHHHHhhcccccc----------Cc-cccCCCCCCCHHHHHHHHHHHHHHHhccHH---
Confidence 766 333223566666776654332110000 00 001224556778888888889888776654
Q ss_pred HHHHHHHHHHHHHhhcc--CCee--ecCCCCceeeEEEEEec-CccccCCCC---HHHHHHHHHHCCCccCCCCCCCCCE
Q 001989 873 KIAILNANYMAKRLEKH--YPIL--FRGVNGTVAHEFIVDLR-GLKNTAGIE---PEDVAKRLMDYGFHGPTMSWPVPGT 944 (985)
Q Consensus 873 ~~~~~~a~~l~~~L~~g--~~l~--~~~~~~~~~~~~iv~~~-~~~~~~g~~---~~~v~~~L~~~Gi~~~~~~~p~~~~ 944 (985)
++..++.+++++.|++. ..++ +.+. + .+..+.+.-+ ..+.....+ ...+.+.|.++|+++... .+.
T Consensus 355 ~~~~~~g~~l~~~l~~l~~~~~v~~vrG~-G-lm~giel~~~~~~~~~~~~~~~~~~~i~~~~~~~Gvl~~~~----g~~ 428 (460)
T PRK06916 355 EQVARKTEYVATQLEDLFALKHVGDIRQL-G-LMVGIELVKNKETKEPFEWTERVGVQVCKRSRELGMLTRPL----GNT 428 (460)
T ss_pred HHHHHHHHHHHHHHHHhhcCCCeEEeecC-C-ceeeEEeecccccccCCCchhhHHHHHHHHHHHCCeEEEec----CCE
Confidence 46677788888888752 2211 1121 2 2222222111 000000001 246888899999987533 378
Q ss_pred EEEeccCCCCHHHHHHHHccCChhHHHHhhccCC
Q 001989 945 LMIEPTESESKSWTGIVMLSSPSEKKLHRLKMGR 978 (985)
Q Consensus 945 lris~t~~~t~eeId~~~~~~~l~~~~~~~~~~~ 978 (985)
+|+.|+..+|++|||. ++++|+++++++..|+
T Consensus 429 l~~~Ppl~it~~~id~--~~~~l~~~l~~~~~~~ 460 (460)
T PRK06916 429 IVFMPPLASTIDELDE--MLRILYKAISDVTEGE 460 (460)
T ss_pred EEEeCCcccCHHHHHH--HHHHHHHHHHhhccCC
Confidence 9999999999999999 8899999998877664
|
|
| >PRK09221 beta alanine--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.8e-15 Score=177.07 Aligned_cols=341 Identities=14% Similarity=0.139 Sum_probs=202.7
Q ss_pred ccccccccCCCccccccccccccccccCCCCchhhhhhHHHHHHHHHHHHHHHhCCC-ccceecCcHHHHHHHHHHHHHH
Q 001989 592 IPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFD-SFSLQPNAGAAGEYAGLMVIRA 670 (985)
Q Consensus 592 ~~lG~~t~~~~~~~~~~~~~~~~f~~~~p~~p~e~~~G~~~~~~e~~~~la~l~G~~-~~~~~~~sGa~a~~a~l~air~ 670 (985)
..||++++.+..+...+.......... .+. .+...++.+.|++++... ...++.+||++|++++++.+|.
T Consensus 61 ~~lGh~~p~v~~ai~~ql~~l~~~~~~-~~~--------~~~~~~la~~L~~~~p~~~~~v~f~~sGseAve~AlklAr~ 131 (445)
T PRK09221 61 CNAGHGRPEIVEAVARQAATLDYAPAF-QMG--------HPLAFELAERLAELAPGGLDHVFFTNSGSESVDTALKIALA 131 (445)
T ss_pred ccCCCCCHHHHHHHHHHHHhccCcccc-ccC--------CHHHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHHHHH
Confidence 457888777765544443211111111 010 122346778888887422 2346789999999999999998
Q ss_pred HHHhcCCCCCCEEEE-cCCCCcccHHHHHHCC------------cEEEEEcCCC-C-----CC-------CCHHHHHHHH
Q 001989 671 YHKARGDHHRNVCII-PVSAHGTNPATAAMCG------------MKIVSVGTDA-K-----GN-------INIEELRKAA 724 (985)
Q Consensus 671 ~~~~~g~~~~~~IIv-~~~~Hg~~~~~a~~~G------------~~vv~v~~d~-~-----g~-------iD~e~L~~~i 724 (985)
|...+|...+.+||. ...+||....+....| ..+..+|... . +. .+++++++.+
T Consensus 132 ~~~~~g~~~r~~ii~~~~~yHG~t~gals~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i 211 (445)
T PRK09221 132 YHRARGQGTRTRLIGRERGYHGVGFGGISVGGIVNNRKMFGGLLPGVDHLPHTLDLPENAFSKGQPEHGAELADDLERLV 211 (445)
T ss_pred HHHhcCCCCCcEEEEECCCcCccchhhhccCCChhhhhccCCCCCCCeEeCCCccccccccCCChHHHHHHHHHHHHHHH
Confidence 864444323556765 7789997654332111 1133344321 0 00 1146788888
Q ss_pred HhcC-CCEEEEEEEcC-CCccccccC----HHHHHHHHHHcCCEEEEEccccccccCCCCCCcc--------CCcEEEeC
Q 001989 725 EANR-DNLSTLMVTYP-STHGVYEEG----IDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYI--------GADVCHLN 790 (985)
Q Consensus 725 ~~~~-~~t~~Vvv~~p-n~~G~i~~d----i~eI~~la~~~galliVD~a~~~~~~~l~~pg~~--------g~Di~~~s 790 (985)
+++. +++++|+++.. +..|++. + +++|.++|+++|+++|+|++|. |+++.|.+ .+|+++++
T Consensus 212 ~~~~~~~iAavi~Epv~g~~G~~~-~~~~yl~~l~~lc~~~g~llI~DEV~t----G~GRtG~~~~~~~~gv~PDi~~~g 286 (445)
T PRK09221 212 ALHDASTIAAVIVEPMAGSAGVLV-PPKGYLQRLREICDKHGILLIFDEVIT----GFGRLGAAFAAERFGVTPDIITFA 286 (445)
T ss_pred HhcCCCcEEEEEEecccCCCCccc-CCHHHHHHHHHHHHHcCCEEEEeehhh----CCCcCchhhHHHhcCCCCCEEEec
Confidence 6543 57888888753 4568776 5 9999999999999999999873 33343322 25888764
Q ss_pred CcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHHHHH
Q 001989 791 LHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTE 870 (985)
Q Consensus 791 ~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl~~ 870 (985)
|.++ +|..-+|.+++++++.+.+.... .. .... ...+++.|+++.++++.+.|+.+..+++
T Consensus 287 --K~l~----gG~~Pi~av~~~~~i~~~~~~~~---~~-------~~~~-~~~~T~~~~pl~~aaa~a~L~~i~~~~l-- 347 (445)
T PRK09221 287 --KGLT----NGAIPMGAVIASDEIYDAFMQGP---EY-------AIEF-FHGYTYSAHPVACAAGLATLDIYREEDL-- 347 (445)
T ss_pred --cccc----cCcccceeeEEcHHHHHhhccCc---cc-------cccc-ccccCCCcCHHHHHHHHHHHHHHHhccH--
Confidence 7763 34222555677777655442110 00 0000 0112345677777788888888866654
Q ss_pred HHHHHHHHHHHHHHHhhcc--CCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCCCCCCCEEEEe
Q 001989 871 ASKIAILNANYMAKRLEKH--YPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIE 948 (985)
Q Consensus 871 ~~~~~~~~a~~l~~~L~~g--~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~~p~~~~lris 948 (985)
.++..++.++|+++|++. +..+..-.....+. .+.+.............+.++|.++|+++... .+.+|++
T Consensus 348 -~~~~~~~g~~l~~~l~~l~~~~~v~~vrg~Gl~~--~v~~~~~~~~~~~~~~~~~~~~~~~Gv~~~~~----~~~lr~~ 420 (445)
T PRK09221 348 -FERAAELAPYFEDAVHSLKGLPHVIDIRNIGLVA--GIELAPRPGAPGARGYEAFMKCFEKGLLVRYT----GDTIALS 420 (445)
T ss_pred -HHHHHHHHHHHHHHHHhhccCCCEEEEecCceEE--EEEEecccccccchHHHHHHHHHHCCeEEeec----CCEEEEE
Confidence 456778888999888752 22211100001221 22221100000122467889999999987532 3689999
Q ss_pred ccCCCCHHHHHHHHccCChhHHHHhh
Q 001989 949 PTESESKSWTGIVMLSSPSEKKLHRL 974 (985)
Q Consensus 949 ~t~~~t~eeId~~~~~~~l~~~~~~~ 974 (985)
|+..+|++|||+ ++++|++++.++
T Consensus 421 Ppl~~t~~eid~--~~~~l~~~l~~~ 444 (445)
T PRK09221 421 PPLIIEKAQIDE--LVDALGDALRAV 444 (445)
T ss_pred CCccCCHHHHHH--HHHHHHHHHHhh
Confidence 999999999999 889999888654
|
|
| >PRK09082 methionine aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.72 E-value=5.7e-16 Score=179.21 Aligned_cols=337 Identities=11% Similarity=0.131 Sum_probs=205.7
Q ss_pred HHHHHHHHhccccCcccccccccccccCCCccccccccccccc-cccCCCCchhhhhhHHHHHHHHHHHHHHHhCCCc--
Q 001989 573 LLRYIHLLQSKELSLCHSMIPLGSCTMKLNATTEMMPVTWPSF-ANIHPFAPADQAQGYQEMFNNLGEWLCTITGFDS-- 649 (985)
Q Consensus 573 ~~~~l~~l~~~~~~~~~~~~~lG~~t~~~~~~~~~~~~~~~~f-~~~~p~~p~e~~~G~~~~~~e~~~~la~l~G~~~-- 649 (985)
+++.+..+.+++ +++.|+.+.+.++............. ...+.|.+ .+|..++.+++++++.+++|.+.
T Consensus 19 ~~~~~~~~~~~~-----~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~Y~~---~~G~~~lr~~~a~~l~~~~~~~~~~ 90 (386)
T PRK09082 19 IFTVMSALAAEH-----GAINLSQGFPDFDGPPYLVEALAYAMAAGHNQYPP---MTGVAALREAIAAKTARLYGRQYDA 90 (386)
T ss_pred HHHHHHHHHhhC-----CEEEecCCCCCCCCCHHHHHHHHHHHHcCCCCCCC---CCCcHHHHHHHHHHHHHHhCCCCCC
Confidence 455555555432 35778776655543222222111111 11223333 36888888888999998888753
Q ss_pred -cceec-CcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcCCC-CCCCCHHHHHHHHHh
Q 001989 650 -FSLQP-NAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDA-KGNINIEELRKAAEA 726 (985)
Q Consensus 650 -~~~~~-~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~d~-~g~iD~e~L~~~i~~ 726 (985)
..+.. +++++|...++ +.+. .++|+|+++++.|+.+...++..|.+++.++.+. ++.+|+++++++++
T Consensus 91 ~~~i~~t~G~~~al~~~~---~~~~-----~~gd~Vli~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~~~- 161 (386)
T PRK09082 91 DSEITVTAGATEALFAAI---LALV-----RPGDEVIVFDPSYDSYAPAIELAGGRAVRVALQPPDFRVDWQRFAAAIS- 161 (386)
T ss_pred CCcEEEeCCHHHHHHHHH---HHHc-----CCCCEEEEeCCCchhhHHHHHHcCCEEEEEecCcccccCCHHHHHHhcC-
Confidence 23444 44455554333 3321 4678999999988887777888999999999864 57899999999997
Q ss_pred cCCCEEEEEEEcC-CCccccc--cCHHHHHHHHHHcCCEEEEEccccccc-cC--CCC----CCccCCcEEEeCCccccc
Q 001989 727 NRDNLSTLMVTYP-STHGVYE--EGIDEICKIIHDNGGQVYMDGANMNAQ-VG--LTS----PGYIGADVCHLNLHKTFC 796 (985)
Q Consensus 727 ~~~~t~~Vvv~~p-n~~G~i~--~di~eI~~la~~~galliVD~a~~~~~-~~--l~~----pg~~g~Di~~~s~hK~l~ 796 (985)
+++++|++++| |++|.+. .++++|.++|+++|+++++|.++.... .+ ... ++...-.+++.|++|.|+
T Consensus 162 --~~~~~v~l~~p~NPtG~~~~~~~~~~i~~~a~~~~i~li~De~y~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~~ 239 (386)
T PRK09082 162 --PRTRLIILNTPHNPSGTVWSAADMRALWQLIAGTDIYVLSDEVYEHIVFDGAGHASVLRHPELRERAFVVSSFGKTYH 239 (386)
T ss_pred --ccceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHCCEEEEEehhhhhhccCCCCCCChhhCcCccCcEEEEeechhhcc
Confidence 78899999988 5799762 278999999999999999999873211 11 001 111234577888899886
Q ss_pred ccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHHHHHHHHHHH
Q 001989 797 IPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAI 876 (985)
Q Consensus 797 ~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl~~~~~~~~ 876 (985)
+| |.++|++++++++...+.... .....+++ ...+. ++..++.. .++-+++..+...
T Consensus 240 ~~----G~RiG~iv~~~~l~~~~~~~~------------~~~~~~~~--~~~q~----~~~~~l~~-~~~~~~~~~~~~~ 296 (386)
T PRK09082 240 VT----GWKVGYCVAPAALSAEFRKVH------------QYNTFTVN--TPAQL----ALADYLRA-EPEHYLELPAFYQ 296 (386)
T ss_pred ch----hhhhhhhhCCHHHHHHHHHHH------------hhhcCCCC--hHHHH----HHHHHHhC-ChHHHHHHHHHHH
Confidence 54 678999998876654332100 00001111 11111 12233321 3444555555667
Q ss_pred HHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHH-HHCCCccCCC-CC---C-CCCEEEEec
Q 001989 877 LNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRL-MDYGFHGPTM-SW---P-VPGTLMIEP 949 (985)
Q Consensus 877 ~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L-~~~Gi~~~~~-~~---p-~~~~lris~ 949 (985)
++.+++.+.|++ ++++ ..+.+.++ +.++++.+ .+.+..++++.| .++|+.+... .| + ..+++|+++
T Consensus 297 ~~~~~~~~~L~~~~~~~--~~~~g~~~--~~~~~~~~---~~~~~~~~~~~l~~~~~v~v~pg~~f~~~~~~~~~~Ri~~ 369 (386)
T PRK09082 297 AKRDRFRAALANSRFKL--LPCEGTYF--QLVDYSAI---SDLDDVEFCQWLTREHGVAAIPLSVFYADPFPHRLVRLCF 369 (386)
T ss_pred HHHHHHHHHHHhCCCcc--cCCCeeEE--EEEecccc---CCCCHHHHHHHHHHhCCEEEeCcHHhCCCCCCCCEEEEEe
Confidence 888889999886 4443 12222222 33455411 135678899987 5679986432 23 2 247899999
Q ss_pred cCCCCHHHHHH
Q 001989 950 TESESKSWTGI 960 (985)
Q Consensus 950 t~~~t~eeId~ 960 (985)
+. +++++++
T Consensus 370 ~~--~~~~l~~ 378 (386)
T PRK09082 370 AK--QEETLDA 378 (386)
T ss_pred cC--CHHHHHH
Confidence 74 6777777
|
|
| >PLN00175 aminotransferase family protein; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.5e-15 Score=176.94 Aligned_cols=334 Identities=16% Similarity=0.154 Sum_probs=204.7
Q ss_pred ccccccccccCCCcccccccccccccc-ccCCCCchhhhhhHHHHHHHHHHHHHHHhCCC--cc-ceecCcH-HHHHHHH
Q 001989 590 SMIPLGSCTMKLNATTEMMPVTWPSFA-NIHPFAPADQAQGYQEMFNNLGEWLCTITGFD--SF-SLQPNAG-AAGEYAG 664 (985)
Q Consensus 590 ~~~~lG~~t~~~~~~~~~~~~~~~~f~-~~~p~~p~e~~~G~~~~~~e~~~~la~l~G~~--~~-~~~~~sG-a~a~~a~ 664 (985)
+++.|+.|.+.+++............. ..+.|.+ .+|..++.+.+.+++.+..|.+ .. .+..++| ++|...+
T Consensus 55 ~~i~l~~G~P~~~~~~~~~~~~~~~~~~~~~~Y~~---~~G~~~Lr~aia~~~~~~~g~~~~~~~~I~vt~G~~~al~~~ 131 (413)
T PLN00175 55 GAINLGQGFPNFDGPDFVKEAAIQAIRDGKNQYAR---GFGVPELNSAIAERFKKDTGLVVDPEKEVTVTSGCTEAIAAT 131 (413)
T ss_pred CeEecCCCCCCCCCCHHHHHHHHHHHhcCCCCcCC---CCCCHHHHHHHHHHHHHHhCCCCCCCCCEEEeCCHHHHHHHH
Confidence 367788777666543222111000000 1123333 3577777777777777766754 33 3555555 4454333
Q ss_pred HHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcCCC-CCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCc
Q 001989 665 LMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDA-KGNINIEELRKAAEANRDNLSTLMVTYP-STH 742 (985)
Q Consensus 665 l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~d~-~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~ 742 (985)
++.+. +++|+|+++++.|..+...++..|++++.+++++ ++.+|+++|++++. +++++|++++| |++
T Consensus 132 ---~~~l~-----~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~l~~~~~---~~~k~i~i~~p~NPt 200 (413)
T PLN00175 132 ---ILGLI-----NPGDEVILFAPFYDSYEATLSMAGAKIKTVTLRPPDFAVPEDELKAAFT---SKTRAILINTPHNPT 200 (413)
T ss_pred ---HHHhC-----CCCCEEEEeCCCchhHHHHHHHcCCEEEEEECCcccCCCCHHHHHHhcC---cCceEEEecCCCCCC
Confidence 33221 4789999999888777777889999999999864 47899999999997 78999999998 579
Q ss_pred cccc--cCHHHHHHHHHHcCCEEEEEccccccc-cC----C-CCCCccCCcEEEeCCcccccccCCCCCCceEEEEEccc
Q 001989 743 GVYE--EGIDEICKIIHDNGGQVYMDGANMNAQ-VG----L-TSPGYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKH 814 (985)
Q Consensus 743 G~i~--~di~eI~~la~~~galliVD~a~~~~~-~~----l-~~pg~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~ 814 (985)
|.+. .++++|+++|+++|+++++|+++.... .+ + ..++..+..|++.|+.|.|++| |.++|+++++++
T Consensus 201 G~~~s~~~l~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~s~~~~~~~~~~vi~i~SfSK~~~~~----G~RiG~~v~~~~ 276 (413)
T PLN00175 201 GKMFTREELELIASLCKENDVLAFTDEVYDKLAFEGDHISMASLPGMYERTVTMNSLGKTFSLT----GWKIGWAIAPPH 276 (413)
T ss_pred CcCCCHHHHHHHHHHHHHcCcEEEEecccCccccCCcccChhhCCCCcCcEEEEecchhhccCc----chheeeeEeCHH
Confidence 9985 258889999999999999999874211 11 0 0111123357788989998654 788999999877
Q ss_pred ccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCee
Q 001989 815 LAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPIL 893 (985)
Q Consensus 815 l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~ 893 (985)
+...+.... .....+.+...+. ++..+|. -+.+-+++..+...++++++.+.|++ ++.+.
T Consensus 277 l~~~l~~~~--------------~~~~~~~s~~~Q~----a~~~~l~-~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~ 337 (413)
T PLN00175 277 LTWGVRQAH--------------SFLTFATATPMQW----AAVAALR-APESYYEELKRDYSAKKDILVEGLKEVGFKVY 337 (413)
T ss_pred HHHHHHHHH--------------hhccCCCCHHHHH----HHHHHHh-CCHHHHHHHHHHHHHHHHHHHHHHHHCCCeec
Confidence 654432110 0001111111121 1222332 23334556666677888899999987 44432
Q ss_pred ecCCCCceeeEEEEEecCccccCCC-CHHHHHHHHH-HCCCccCC-CCC-----CCCCEEEEeccCCCCHHHHHHHHccC
Q 001989 894 FRGVNGTVAHEFIVDLRGLKNTAGI-EPEDVAKRLM-DYGFHGPT-MSW-----PVPGTLMIEPTESESKSWTGIVMLSS 965 (985)
Q Consensus 894 ~~~~~~~~~~~~iv~~~~~~~~~g~-~~~~v~~~L~-~~Gi~~~~-~~~-----p~~~~lris~t~~~t~eeId~~~~~~ 965 (985)
.+.+.++ +.+++.. .+. +..++++.|. ++|+.+.+ ..| +..+.+||++.. ++++++. .++
T Consensus 338 --~p~g~~f--~~~~~~~----~~~~~~~~~~~~ll~~~gV~v~pg~~F~~~~~~~~~~iRls~~~--~~e~l~~--~~~ 405 (413)
T PLN00175 338 --PSSGTYF--VMVDHTP----FGFENDIAFCEYLIEEVGVAAIPPSVFYLNPEDGKNLVRFAFCK--DEETLRA--AVE 405 (413)
T ss_pred --CCCeeEE--EEEeccc----cCCCCHHHHHHHHHHhCCEEEeCchHhCCCCCCCCCEEEEEEcC--CHHHHHH--HHH
Confidence 2223332 3344421 133 4678999886 56987543 222 124689999973 7888888 667
Q ss_pred ChhHHHH
Q 001989 966 PSEKKLH 972 (985)
Q Consensus 966 ~l~~~~~ 972 (985)
.|++.++
T Consensus 406 rL~~~~~ 412 (413)
T PLN00175 406 RMKTKLK 412 (413)
T ss_pred HHHHHHh
Confidence 7776654
|
|
| >PRK04013 argD acetylornithine/acetyl-lysine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=7.2e-16 Score=175.37 Aligned_cols=301 Identities=14% Similarity=0.131 Sum_probs=194.6
Q ss_pred ccccccccCCCccccccccccccccccCCCCchhhhhhHHHHHHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHH
Q 001989 592 IPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAY 671 (985)
Q Consensus 592 ~~lG~~t~~~~~~~~~~~~~~~~f~~~~p~~p~e~~~G~~~~~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~ 671 (985)
..+|+|++++..+...+......+...++. +...++.+.++++++.+. .++.+||++|++++++++|.|
T Consensus 36 ~~lGh~~p~v~~ai~~ql~~~~~~~~~~~~----------~~~~~la~~l~~~~~~~~-v~~~~SGseA~e~Alklar~~ 104 (364)
T PRK04013 36 NVLGHNHPEWVEEMSEQLEKLVVAGPMFEH----------EEKEEMLEELSKWVNYEY-VYMGNSGTEAVEAALKFARLY 104 (364)
T ss_pred ccCCCCCHHHHHHHHHHHHhcCCccCCcCC----------HHHHHHHHHHHhhcCCCE-EEEeCchHHHHHHHHHHHHHH
Confidence 458888777766555444322222222221 224577888999887654 466799999999999998876
Q ss_pred HHhcCCCCCCEEEE-cCCCCcccHHHHHH-------CCc-----EEEEEcCCCCCCCCHHHHHHHHHhcCCCEEEEEEEc
Q 001989 672 HKARGDHHRNVCII-PVSAHGTNPATAAM-------CGM-----KIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTY 738 (985)
Q Consensus 672 ~~~~g~~~~~~IIv-~~~~Hg~~~~~a~~-------~G~-----~vv~v~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~ 738 (985)
.++++||. ..++||....+... .++ .+..+|. .|++++++.+. +++++|+++.
T Consensus 105 ------~gr~~Ii~~~~syHG~t~~~ls~~~~~~~~~~~~p~~~~~~~~~~-----~d~~~l~~~i~---~~~aAvivEp 170 (364)
T PRK04013 105 ------TGRKEIIAMTNAFHGRTMGALSATWKPKYREDFEPLVPGFKHIPF-----NDVEAAKEAIT---KETAAVIFEP 170 (364)
T ss_pred ------hCCCEEEEECCccccCchhhccCCCCcccccCCCCCCCCcEEecC-----CCHHHHHHHhc---CCcEEEEEcC
Confidence 24467776 66789976554331 111 2333443 27899999987 7899999876
Q ss_pred CC-CccccccC---HHHHHHHHHHcCCEEEEEccccccccCCCCCCcc--------CCcEEEeCCcccccccCCCCCCce
Q 001989 739 PS-THGVYEEG---IDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYI--------GADVCHLNLHKTFCIPHGGGGPGM 806 (985)
Q Consensus 739 pn-~~G~i~~d---i~eI~~la~~~galliVD~a~~~~~~~l~~pg~~--------g~Di~~~s~hK~l~~p~g~GGPg~ 806 (985)
.. ..|.+.+| +++|.++|+++|+++|+|+++. |+ +.|.+ .+|+++++ |.++ +|-|-
T Consensus 171 i~g~gG~~~~~~~yl~~lr~lc~~~gillI~DEv~t----G~-RtG~~~a~~~~gv~PDiv~~g--K~lg----gG~P~- 238 (364)
T PRK04013 171 IQGEGGIVPAKEEFVKTLRDLTEDVGALLIADEVQS----GL-RTGKFLAIEHYKVEPDIVTMG--KGIG----NGVPV- 238 (364)
T ss_pred CcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhh----cC-CCCchhHHHhcCCCCCEEEec--cccc----CCcee-
Confidence 43 45666545 9999999999999999999873 44 45433 37988773 7663 44454
Q ss_pred EEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHh
Q 001989 807 GPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRL 886 (985)
Q Consensus 807 G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L 886 (985)
|.+..++++.+ +. ..+++.|+++.++++.+.|..+.++++.+.+++. + +++
T Consensus 239 ~a~~~~~~~~~---~~-------------------~~~T~~gnp~~~aaa~a~l~~i~~~~l~~~~~~~------l-~~l 289 (364)
T PRK04013 239 SLTLTNFDVER---GK-------------------HGSTFGGNPLACKAVAVTLRILRRERLVEKAGEK------F-IEI 289 (364)
T ss_pred EEEEecccccC---CC-------------------cCCCCCcCHHHHHHHHHHHHHHHhccHHHHHHHH------H-HHh
Confidence 44445544311 10 1124566788888889999999887766544332 2 233
Q ss_pred hccCCe-eecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCCCCCCCEEEEeccCCCCHHHHHHHHccC
Q 001989 887 EKHYPI-LFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKSWTGIVMLSS 965 (985)
Q Consensus 887 ~~g~~l-~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~~p~~~~lris~t~~~t~eeId~~~~~~ 965 (985)
... .+ -..+. ..+ +-+.+. .....+.+.+.++|+.+.... .+.+|+.|+...|++|+|. +++
T Consensus 290 ~~~-~v~~vRG~--Gl~--~gve~~-------~~~~~i~~~~~~~Gll~~~~g---~~vlr~~Ppl~it~~~i~~--~~~ 352 (364)
T PRK04013 290 KGE-RVVTTRGR--GLM--IGIVLK-------KPVGKYVEELQNRGYLVHTAG---QRVIRLLPPLIISKDTMEE--AKS 352 (364)
T ss_pred ccC-cceeeeeC--cEE--EEEEeC-------CcHHHHHHHHHhCCcEEeeCC---CCEEEEeCCcccCHHHHHH--HHH
Confidence 221 11 01121 122 223332 125678899999999875432 3789999999999999999 889
Q ss_pred ChhHHHHhhc
Q 001989 966 PSEKKLHRLK 975 (985)
Q Consensus 966 ~l~~~~~~~~ 975 (985)
+|++++.++-
T Consensus 353 ~l~~~l~~~~ 362 (364)
T PRK04013 353 AIEGVINDIL 362 (364)
T ss_pred HHHHHHHHHh
Confidence 9999887643
|
|
| >PRK07681 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.4e-15 Score=176.66 Aligned_cols=295 Identities=13% Similarity=0.104 Sum_probs=186.3
Q ss_pred hhHHHHHHHHHHHHHHHhCC--Cc-cceecCcHHH-HHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcE
Q 001989 628 QGYQEMFNNLGEWLCTITGF--DS-FSLQPNAGAA-GEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMK 703 (985)
Q Consensus 628 ~G~~~~~~e~~~~la~l~G~--~~-~~~~~~sGa~-a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~ 703 (985)
+|..++.+.+.+++.+..|. +. ..+..++|++ +.. +++..+. .+||+|+++++.|+.+...++..|++
T Consensus 69 ~G~~~lr~aia~~~~~~~g~~~~~~~~I~it~G~~~al~---~~~~~~~-----~~Gd~Vlv~~P~y~~~~~~~~~~G~~ 140 (399)
T PRK07681 69 SGIQEFHEAVTEYYNNTHNVILNADKEVLLLMGSQDGLV---HLPMVYA-----NPGDIILVPDPGYTAYETGIQMAGAT 140 (399)
T ss_pred CCcHHHHHHHHHHHHHHhCCCCCCCCeEEECCCcHHHHH---HHHHHhC-----CCCCEEEECCCCccchHHHHHhcCCE
Confidence 57666666666666665554 43 4565555554 432 2233321 47899999999888888888899999
Q ss_pred EEEEcCCCC--CCCCHHHHHHHHHhcCCCEEEEEEEcC-CCcccccc--CHHHHHHHHHHcCCEEEEEccccccc-cCCC
Q 001989 704 IVSVGTDAK--GNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEE--GIDEICKIIHDNGGQVYMDGANMNAQ-VGLT 777 (985)
Q Consensus 704 vv~v~~d~~--g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~--di~eI~~la~~~galliVD~a~~~~~-~~l~ 777 (985)
++.+|++++ +.+|++++++++. +++++|++++| |++|.+.+ .+++|.++|+++|+++++|.++..-. .+-.
T Consensus 141 ~~~v~~~~~~~~~~d~~~l~~~~~---~~~k~v~l~~P~NPTG~~~s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~~ 217 (399)
T PRK07681 141 SYYMPLKKENDFLPDLELIPEEIA---DKAKMMILNFPGNPVPAMAHEDFFKEVIAFAKKHNIIVVHDFAYAEFYFDGNK 217 (399)
T ss_pred EEEEecCCCCCCcCCHHHHHHhcc---ccceEEEEeCCCCCcCcCCCHHHHHHHHHHHHHcCeEEEEeccchhheeCCCC
Confidence 999998754 4689999999886 68999999998 57999861 37889999999999999999874211 1100
Q ss_pred --C----CCccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhH
Q 001989 778 --S----PGYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSAL 851 (985)
Q Consensus 778 --~----pg~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~ 851 (985)
. ++.....|++.|++|.|+.| |.++|++++++++.+.+.... .....+.+...+
T Consensus 218 ~~~~~~~~~~~~~~i~~~S~SK~~~~~----GlRiG~~i~~~~l~~~~~~~~--------------~~~~~~~s~~~q-- 277 (399)
T PRK07681 218 PISFLSVPGAKEVGVEINSLSKSYSLA----GSRIGYMIGNEEIVRALTQFK--------------SNTDYGVFLPIQ-- 277 (399)
T ss_pred CCChhhCCCCcccEEEEeecccccCCc----cceeEEEecCHHHHHHHHHHH--------------hhcccCCCHHHH--
Confidence 0 11112347778889988644 678999998876654432100 000111111111
Q ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHH-
Q 001989 852 ILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMD- 929 (985)
Q Consensus 852 ~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~- 929 (985)
.++..++. -+.+-+++..+...++.+++.+.|++ ++++. .+.+..+ +.++++ .+.+..+++++|.+
T Consensus 278 --~~~~~~l~-~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~--~p~~g~f--~~~~l~-----~~~~~~~~~~~l~~~ 345 (399)
T PRK07681 278 --KAACAALR-NGAAFCEKNRGIYQERRDTLVDGFRTFGWNVD--KPAGSMF--VWAEIP-----KGWTSLSFAYALMDR 345 (399)
T ss_pred --HHHHHHHh-CcHHHHHHHHHHHHHHHHHHHHHHHHCCCccc--CCCeeeE--EEEECC-----CCCCHHHHHHHHHHh
Confidence 11222222 22233444455567778888888876 44432 2222222 345554 24567889999887
Q ss_pred CCCccCCC-CCC--CCCEEEEeccCCCCHHHHHHHHccCChhH
Q 001989 930 YGFHGPTM-SWP--VPGTLMIEPTESESKSWTGIVMLSSPSEK 969 (985)
Q Consensus 930 ~Gi~~~~~-~~p--~~~~lris~t~~~t~eeId~~~~~~~l~~ 969 (985)
+||.+... .|. .++++||++. .+++++++ +++.|++
T Consensus 346 ~gv~v~pg~~f~~~~~~~iRis~~--~~~~~~~~--~l~~l~~ 384 (399)
T PRK07681 346 ANVVVTPGHAFGPHGEGFVRIALV--QDEEVLQQ--AVENIRN 384 (399)
T ss_pred CCEEEeCChhhCcCCCCeEEEEec--CCHHHHHH--HHHHHHH
Confidence 79986542 222 2478999997 46899998 6666665
|
|
| >TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.3e-15 Score=174.50 Aligned_cols=211 Identities=15% Similarity=0.141 Sum_probs=155.3
Q ss_pred HHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc---hh
Q 001989 214 LNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL---KD 290 (985)
Q Consensus 214 ~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~---~~ 290 (985)
.++++.+|++.|.+. +.++.+|++++.++++++ . ++||+||+++..|+.+...+....+..|+++++++. ++
T Consensus 53 ~~lE~~lA~l~g~~~--~~~~~sG~~Ai~~al~al-l--~~GD~Vl~~~~~y~~t~~~~~~~~~~~gi~v~~~d~~~~e~ 127 (377)
T TIGR01324 53 FALQDAMCELEGGAG--CYLYPSGLAAVTNSILAF-V--KAGDHVLMVDSAYEPTRYFCDIVLKRMGVDITYYDPLIGED 127 (377)
T ss_pred HHHHHHHHHHhCCCc--EEEECcHHHHHHHHHHHh-c--CCCCEEEEcCCCcHHHHHHHHHHHHhcCcEEEEECCCCHHH
Confidence 447789999999764 778999999888877765 3 389999999999987766554444567999988876 56
Q ss_pred hhc-cCCCEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCCCCCcccceEEEecC-ccccccCCCCC
Q 001989 291 IDY-KSGDVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKPPGELGADIVVGSA-QRFGVPMGYGG 367 (985)
Q Consensus 291 l~~-l~~~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~~~~~~GaDi~v~s~-k~lg~P~~~GG 367 (985)
+++ ++++|++|++++| |++|.+.|+++|+++||++|++++|| +.++.|.+..|.++|+||+++|+ |+++++ |+
T Consensus 128 l~~~i~~~tklV~lesp~Np~g~~~dl~~I~~la~~~g~~livD-~t~a~g~~~~pl~~gaDivv~S~tK~l~G~---~d 203 (377)
T TIGR01324 128 IATLIQPNTKVLFLEAPSSITFEIQDIPAIAKAARNPGIVIMID-NTWAAGLLFKPLEHGVDISIQAGTKYLVGH---SD 203 (377)
T ss_pred HHHhcCCCceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEE-CCCccccccCccccCceEEEecCceeccCC---CC
Confidence 777 8889999999998 78999999999999999999999994 46777877788899999999998 888654 22
Q ss_pred CcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcchHHHHH
Q 001989 368 PHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIA 447 (985)
Q Consensus 368 P~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i~ 447 (985)
-.+|+++++++..+++-. .++-.|+. . ++. ..|+..-|.+-+..+.
T Consensus 204 ~~gG~v~~~~~~~~~l~~-------------------------~~~~~G~~-l---~p~-----~a~~~~rgl~tl~~R~ 249 (377)
T TIGR01324 204 IMIGTVVANARTWDQLRE-------------------------HSYLMGQM-V---DAD-----DAYTTLRGLRTLGVRL 249 (377)
T ss_pred ceEEEEEeCHHHHHHHHH-------------------------HHHHhCCC-C---CHH-----HHHHHHhhhhhHHHHH
Confidence 345888888765544310 00111110 0 111 1223344445556667
Q ss_pred HHHHHHHHHHHHHHhcCCCe
Q 001989 448 QRVHGLAGTFALGLKKLGTV 467 (985)
Q Consensus 448 ~~~~~~a~~l~~~L~~~g~~ 467 (985)
++..++|..+++.|++...+
T Consensus 250 ~~~~~~a~~la~~L~~~p~v 269 (377)
T TIGR01324 250 KQHQESSLAIAKWLSEQPEV 269 (377)
T ss_pred HHHHHHHHHHHHHHHhCCCc
Confidence 88889999999999987434
|
This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys. |
| >PLN02880 tyrosine decarboxylase | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.7e-15 Score=178.86 Aligned_cols=358 Identities=13% Similarity=0.059 Sum_probs=212.4
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhcCCCc-c--ceecCCCCCCCCCcHHHHHHHHhCCccccccCCC--hhhHhhhHHHHHH
Q 001989 140 KFSKFDEGLTESQMIEHMQKLASMNKV-Y--KSFIGMGYYNTHVPPVILRNIMENPAWYTQYTPY--QAEIAQGRLESLL 214 (985)
Q Consensus 140 ~lp~~~~~~se~e~~~~~~~l~~~n~~-~--~~~lG~g~y~~~~p~~v~~~i~~~~~~~t~~~py--q~e~sqg~l~~i~ 214 (985)
.+| +++.+-.++++++.+.-..+.. + ..|.|--.-+...++.+.+-+.+ +++.. .-+.+.+..+...
T Consensus 54 ~~p--~~~~~~~~~l~~~~~~i~~~~~~~~hP~f~~~~~~~~~~~~~lad~l~~------~~n~~~~~~~~sp~~~~lE~ 125 (490)
T PLN02880 54 SAP--NQPETLDQVLDDVQAKILPGVTHWQSPNYFAYYPSNSSVAGFLGEMLSA------GLNIVGFSWITSPAATELEM 125 (490)
T ss_pred cCC--CCCCCHHHHHHHHHHHHhcCCCCCCCCCeeEeccCCCcHHHHHHHHHHH------hhccCCcccccCcccHHHHH
Confidence 455 4566888999999875433321 1 22333211111234444432221 11211 1134556667777
Q ss_pred HHHHHHHHhcCCCCc-------ceeeccchHHHH-HHHHHHhhhh-c--C----CCCEEEEcCCCChhHHHHHHHhhcCC
Q 001989 215 NFQTMIADLTGLPMS-------NASLLDEGTAAA-EAMAMCNNIQ-K--G----KKKTFIIASNCHPQTIDICITRADGF 279 (985)
Q Consensus 215 e~q~~ia~L~g~~~~-------~~sl~~~~ta~~-ea~~~a~~~~-~--~----~g~~Vlv~~~~H~s~~~~~~~~a~~~ 279 (985)
+.-+++++|+|++.. ...+++|||.+. .|+..|+... + + ++-.|++++..|.|+.+.++.+ +.
T Consensus 126 ~vi~wl~~l~g~p~~~~~~~~~gG~~tsggs~anl~al~~AR~~~~~~~g~~~~~~~vv~~S~~aH~Sv~Kaa~~l--Gl 203 (490)
T PLN02880 126 IVLDWLAKLLNLPEQFLSTGNGGGVIQGTASEAVLVVLLAARDRVLRKVGKNALEKLVVYASDQTHSALQKACQIA--GI 203 (490)
T ss_pred HHHHHHHHHhCCCchhhcCCCCceEEcCccHHHHHHHHHHHHHHHHHHhcccccCCeEEEEcCCchHHHHHHHHHc--CC
Confidence 888999999999864 366777777654 3333444321 0 0 2235678999999999998653 33
Q ss_pred Ce-EEEEeCc----------hhhhc-cCC------CEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCccccC
Q 001989 280 DI-KVVVSDL----------KDIDY-KSG------DVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTI 340 (985)
Q Consensus 280 gi-~v~~v~~----------~~l~~-l~~------~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~ 340 (985)
|- .++.|+. ++|++ +.+ ...+|+.+.+ +.+|.++|+++|+++|+++|++++||+ .++.+.
T Consensus 204 g~~~v~~Vp~d~~~~~~md~~~L~~~i~~~~~~g~~p~~vvataGTT~~GaiDpl~eI~~i~~~~~iwlHVDa-A~gg~~ 282 (490)
T PLN02880 204 HPENCRLLKTDSSTNYALAPELLSEAISTDLSSGLIPFFLCATVGTTSSTAVDPLLELGKIAKSNGMWFHVDA-AYAGSA 282 (490)
T ss_pred CHHHEEEeecCCCcCCcCCHHHHHHHHHHHHHCCCccEEEEEecCCCcCcccCcHHHHHHHHHHcCCEEEEeh-hhHHHH
Confidence 31 1333332 34544 422 2456677776 569999999999999999999999954 233332
Q ss_pred CCC-------CCcccceEEEecC-ccccccCCCCCCcEEEEEEchh--hHhcCC--Cceeee-eecCCCCcce-eeeccc
Q 001989 341 LKP-------PGELGADIVVGSA-QRFGVPMGYGGPHAAFLATSQE--YKRMMP--GRIVGV-SIDSSGKPAL-RVAMQT 406 (985)
Q Consensus 341 l~~-------~~~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~--~~~~lp--~~~vG~-t~d~~g~~~~-~l~l~t 406 (985)
+.. .+-.+||.++.+. |+++.|.+ +|++++++. +.+.+. ..++.. ..+..+...+ .+.+
T Consensus 283 ~~~~~~~~~l~gie~aDSit~d~HKwl~~P~~-----~g~llvr~~~~l~~~~~~~~~Yl~~~~~~~~~~~~~~~~~i-- 355 (490)
T PLN02880 283 CICPEYRHYIDGVEEADSFNMNAHKWFLTNFD-----CSLLWVKDRNALIQSLSTNPEFLKNKASQANSVVDYKDWQI-- 355 (490)
T ss_pred HhCHHHHHHhcCchhcCEEEECchhhcCCCcc-----EEEEEEeCHHHHHHHHccCHHHhcCccccccCCCChhccCc--
Confidence 222 1225799999999 77777754 688999852 222221 000000 0000000000 0001
Q ss_pred ccccccccccCCCccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCCCcceEEEecCC--
Q 001989 407 REQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDTVKVKCAD-- 484 (985)
Q Consensus 407 re~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~-- 484 (985)
+--||.. ++..-+-+..+|.+|++++.+++.++++|+.+.|++..+++++.++.++.++|+.+.
T Consensus 356 --~~~rr~~------------alklw~~l~~~G~~g~~~~i~~~~~lA~~~~~~l~~~~~~el~~~~~~~iv~Fr~~~~~ 421 (490)
T PLN02880 356 --PLGRRFR------------SLKLWMVLRLYGVENLQSYIRNHIKLAKEFEQLVAQDSRFEVVTPRIFSLVCFRLVPPK 421 (490)
T ss_pred --CCCCccc------------HHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCCceEEEEEEEeCCC
Confidence 1112211 111111146899999999999999999999999998844999977777777777541
Q ss_pred ---------HHHHHHHHHHcCc-eeeee--c-CCeEEEEeccCCC-HHHHHHHHHHHhC
Q 001989 485 ---------AHAIASAAYKIEM-NLRVV--D-SNTVTASFDETTT-LEDVDKLFIVFAG 529 (985)
Q Consensus 485 ---------~~~v~~~L~~~GI-~~~~~--~-~~~lris~t~~~t-~edId~li~aL~~ 529 (985)
..++.++|.+.|. ++... . ...+|+|++..+| ++|+|++++.+.+
T Consensus 422 ~~~~~~~~~n~~l~~~l~~~g~~~v~~t~~~g~~~lR~~~~n~~tt~~di~~~~~~i~~ 480 (490)
T PLN02880 422 NNEDNGNKLNHDLLDAVNSSGKIFISHTVLSGKYVLRFAVGAPLTEERHVTAAWKVLQD 480 (490)
T ss_pred CChhhHHHHHHHHHHHHHhCCCEEEEEEEECCEEEEEEEecCCCCCHHHHHHHHHHHHH
Confidence 2345566665544 45432 2 3579999988665 5999999999975
|
|
| >TIGR03576 pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 family | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.7e-15 Score=170.23 Aligned_cols=312 Identities=16% Similarity=0.119 Sum_probs=203.8
Q ss_pred HHHHHHHHHHhcCC--CccceecCCCCCCCCCcHHHHHHHHhCCccccccCCChhhHhhhHHHHHHHHHHHHHHhcCCCC
Q 001989 151 SQMIEHMQKLASMN--KVYKSFIGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPM 228 (985)
Q Consensus 151 ~e~~~~~~~l~~~n--~~~~~~lG~g~y~~~~p~~v~~~i~~~~~~~t~~~pyq~e~sqg~l~~i~e~q~~ia~L~g~~~ 228 (985)
.+.++|+++--+++ .+.++|||...+|..+.+... .+.. |+ |..+.+.++++.+|+++|.++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~ylgl~~~~~~~~~~~~-~~~~-------~~--------g~~~~~~~Le~~lA~~~g~~~ 71 (346)
T TIGR03576 8 EKALEIIREKISRGGRDSLYDLTGLAGGFKIDEEDLE-LLET-------YV--------GPAIFEEKVQELGREHLGGPE 71 (346)
T ss_pred HHHHHHHHHHHhccCCccccccccCCCChhHHHHHHH-HHHH-------hc--------CCHHHHHHHHHHHHHHcCCCc
Confidence 45667777666665 468899999987655555443 3222 21 445778889999999999988
Q ss_pred cceeeccchHHHHHHHHHHhhhhcCCCCEEEEc---CCCChhHHHHHHHhhcCCCeEEEEe-CchhhhccCCCEeEEEEE
Q 001989 229 SNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIA---SNCHPQTIDICITRADGFDIKVVVS-DLKDIDYKSGDVCGVLVQ 304 (985)
Q Consensus 229 ~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~---~~~H~s~~~~~~~~a~~~gi~v~~v-~~~~l~~l~~~t~~V~v~ 304 (985)
.++.+++||+.++.+++.++. ++||+|+++ ...|+++...++. .|.++... ++++++. .+++++|+++
T Consensus 72 e~ilv~~gg~~a~~~~~~al~---~~gd~Vli~~~d~p~~~s~~~~~~l----~ga~~~~~~~l~~l~~-~~~~~lIiit 143 (346)
T TIGR03576 72 EKILVFNRTSSAILATILALE---PPGRKVVHYLPEKPAHPSIPRSCKL----AGAEYFESDELSELKK-IDGTSLVVIT 143 (346)
T ss_pred ceEEEECCHHHHHHHHHHHhC---CCCCEEEECCCCCCCchhHHHHHHH----cCCEEeccCCHHHHhh-CcCceEEEEE
Confidence 889999999988887777653 389999864 4699999888753 46665432 3444432 3567888888
Q ss_pred cCCCCeee---ccHHHHHHHHHhCCcEEEEEecCccccCCC-----CCCcccceEEEecC-ccccccCCCCCCcEEEEEE
Q 001989 305 YPGTEGEV---LDYGDFIKNAHANGVKVVMATDLLALTILK-----PPGELGADIVVGSA-QRFGVPMGYGGPHAAFLAT 375 (985)
Q Consensus 305 ~pn~~G~v---~di~~I~~~a~~~galliV~a~~~~lg~l~-----~~~~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~ 375 (985)
.++++|.+ .|+++|+++|+++|++++|| +.++.++.. +..++|+|++++|. |++ +|+-+||+++
T Consensus 144 g~s~~G~v~~~~~L~~i~~la~~~~~~livD-EAy~~~~~~~~~~~~~~~~~~divv~s~SKal------aG~r~G~v~~ 216 (346)
T TIGR03576 144 GSTMDLKVVSEEDLKRVIKQAKSKEAIVLVD-DASGARVRRLYGQPPALDLGADLVVTSTDKLM------DGPRGGLLAG 216 (346)
T ss_pred CCCCCCcccCHHHHHHHHHHHHHcCCEEEEE-CCccccccccCCCCCHHHcCCcEEEeccchhc------cccceEEEEe
Confidence 77889998 79999999999999999994 455544321 11346789999987 754 3455689999
Q ss_pred chhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHH-HHHhCcchHHHHHHHHHHHH
Q 001989 376 SQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMY-AVYHGPEGLKTIAQRVHGLA 454 (985)
Q Consensus 376 ~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~-l~~~g~~Gl~~i~~~~~~~a 454 (985)
++++++.|.. ...+++.|.++. ...+++. +..+ ..+.+.+...++.
T Consensus 217 ~~~li~~l~~-----------------------------~~~~~~~s~~~~-~~~aa~~aL~~~---~~~~~~~~l~~r~ 263 (346)
T TIGR03576 217 RKELVDKIKS-----------------------------VGEQFGLEAQAP-LLAAVVRALEEF---ELSRIRDAFKRKE 263 (346)
T ss_pred CHHHHHHHHH-----------------------------hhcCcccCccHH-HHHHHHHHHhhc---cHHHHHHHHHHHH
Confidence 9888776510 001111111111 2222221 1221 2355667777777
Q ss_pred HHHHHHHhcCCCeEEcCCCCcceEEEecCC---HHHHHHHHHHcCceeeeec-----CCeEEEEeccCC-CHHHHHHHHH
Q 001989 455 GTFALGLKKLGTVEVQGLPFFDTVKVKCAD---AHAIASAAYKIEMNLRVVD-----SNTVTASFDETT-TLEDVDKLFI 525 (985)
Q Consensus 455 ~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~---~~~v~~~L~~~GI~~~~~~-----~~~lris~t~~~-t~edId~li~ 525 (985)
+++.+.++++ .+...+ .+=+.++++. .+.+.+.|.++||.+.... ++++|+|+.... ++.+.++|++
T Consensus 264 ~~~~~~l~~~---~~~~~~-~~f~~~~~~~~~~~~~~~~ll~~~gV~v~~~~~f~~~~~~vRis~~~~~~~~~~~~~~~~ 339 (346)
T TIGR03576 264 EVYLRLFDKL---NVERTP-TGFVIKGVEEEKLIEIGLDLLRNYGIITITAVGMPGASKTLRFDLAAKDAERIGDDYLVE 339 (346)
T ss_pred HHHHHHHHhC---CCCcCC-CeEEEEeCCCCCHHHHHHHHHHhCCEEEeCCcccCCCCCeEEEEEecChHHhcCHHHHHH
Confidence 7877777744 332212 1113334442 3455566667899876531 578999998544 4458999999
Q ss_pred HHhCC
Q 001989 526 VFAGG 530 (985)
Q Consensus 526 aL~~~ 530 (985)
+|++.
T Consensus 340 al~~~ 344 (346)
T TIGR03576 340 AVKDS 344 (346)
T ss_pred HHHhc
Confidence 99864
|
Members of this archaeal protein family are pyridoxal phosphate enzymes of unknown function. Sequence similarity to SelA, a bacterial enzyme of selenocysteine biosynthesis, has led to some members being misannotated as functionally equivalent, but selenocysteine is made on tRNA in Archaea by a two-step process that does not involve a SelA homolog. |
| >cd00616 AHBA_syn 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn) | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.4e-15 Score=173.59 Aligned_cols=280 Identities=17% Similarity=0.169 Sum_probs=184.8
Q ss_pred HHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc---
Q 001989 212 SLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL--- 288 (985)
Q Consensus 212 ~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~--- 288 (985)
...++++.+++++|.+ ++.++.+||.+++.++.++.. ++||+|+++...|+++...+.. .|++++.++.
T Consensus 19 ~~~~~~~~la~~~~~~--~~~~~~sgt~al~~~l~~l~~--~~gd~vl~~~~~~~~~~~~~~~----~g~~~~~~~~~~~ 90 (352)
T cd00616 19 KVREFEKAFAEYLGVK--YAVAVSSGTAALHLALRALGI--GPGDEVIVPSFTFVATANAILL----LGATPVFVDIDPD 90 (352)
T ss_pred HHHHHHHHHHHHhCCC--eEEEECCHHHHHHHHHHHcCC--CCCCEEEeCCcchHHHHHHHHH----cCCeEEEEecCCC
Confidence 3557889999999975 477788999887777766533 3889999999999999888753 5778877653
Q ss_pred ------hhhhc-cCCCEeEEEEEcCCCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCCC---CCcccceEEEecC--
Q 001989 289 ------KDIDY-KSGDVCGVLVQYPGTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKP---PGELGADIVVGSA-- 356 (985)
Q Consensus 289 ------~~l~~-l~~~t~~V~v~~pn~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~~---~~~~GaDi~v~s~-- 356 (985)
+++++ +++++++|++++ ++|.+.|+++|.++|+++|+++++|+ .+++|.... .+.+ .|+.+.|.
T Consensus 91 ~~~~d~~~l~~~i~~~~~~v~~~~--~~G~~~~~~~i~~l~~~~~i~li~D~-a~~~g~~~~~~~~~~~-~d~~~~S~~~ 166 (352)
T cd00616 91 TYNIDPELIEAAITPRTKAIIPVH--LYGNPADMDAIMAIAKRHGLPVIEDA-AQALGATYKGRKVGTF-GDAGAFSFHP 166 (352)
T ss_pred cCCcCHHHHHHhcCcCCeEEEEEC--CCCCcCCHHHHHHHHHHcCCeEEEEC-CCCCCCeECCEEcccC-cceeEEcCCC
Confidence 34555 778899999886 58999999999999999999999953 445553321 1223 58877773
Q ss_pred -ccccccCCCCCCcEEEEEEc-hhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHH
Q 001989 357 -QRFGVPMGYGGPHAAFLATS-QEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMY 434 (985)
Q Consensus 357 -k~lg~P~~~GGP~~G~l~~~-~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~ 434 (985)
|+++ +|..|++.++ +++.+++....-+ |..... .+.+..+.+. +..+..+.+++
T Consensus 167 ~K~~~------~~~gg~~~~~~~~~~~~~~~~~~~------~~~~~~---------~~~~~~~~~~--~~~~~~~~aa~- 222 (352)
T cd00616 167 TKNLT------TGEGGAVVTNDEELAERARLLRNH------GRDRDR---------FKYEHEILGY--NYRLSEIQAAI- 222 (352)
T ss_pred CCCCc------ccCceEEEECCHHHHHHHHHHHHc------CCCCCC---------Cccccceeee--ccCcCHHHHHH-
Confidence 5552 2223666665 4665544211100 000000 0011111110 01111222332
Q ss_pred HHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCC-----CcceEEEecC---C--HHHHHHHHHHcCceeeeec-
Q 001989 435 AVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLP-----FFDTVKVKCA---D--AHAIASAAYKIEMNLRVVD- 503 (985)
Q Consensus 435 l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~-----~~~~~~~~~~---~--~~~v~~~L~~~GI~~~~~~- 503 (985)
.....++++++.++..++++++++.|+++.+++++..+ ....+.|.++ + ..++.+.|.++||.++...
T Consensus 223 -~~~~l~~~~~~~~~~~~~~~~~~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~L~~~gI~~~~~~~ 301 (352)
T cd00616 223 -GLAQLEKLDEIIARRREIAERYKELLADLPGIRLPDVPPGVKHSYHLYVIRLDPEAGESRDELIEALKEAGIETRVHYP 301 (352)
T ss_pred -HHHHHHhhHHHHHHHHHHHHHHHHHhcCCCCccCCCCCCCCceeeEEEEEEECCcCCCCHHHHHHHHHHCCCCeeeecC
Confidence 22233567888899999999999999997448877432 1123555544 3 8899999999999653210
Q ss_pred --------------------------CCeEEEEeccCCCHHHHHHHHHHHh
Q 001989 504 --------------------------SNTVTASFDETTTLEDVDKLFIVFA 528 (985)
Q Consensus 504 --------------------------~~~lris~t~~~t~edId~li~aL~ 528 (985)
.+.+|++++.++|++||++++++|+
T Consensus 302 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~l~~~~~~t~~di~~i~~~l~ 352 (352)
T cd00616 302 PLHHQPPYKKLLGYPPGDLPNAEDLAERVLSLPLHPSLTEEEIDRVIEALR 352 (352)
T ss_pred ccccCHhhhhccCCCcCCChHHHHHHhCeEEccCCCCCCHHHHHHHHHHhC
Confidence 1579999999999999999999874
|
AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein |
| >PRK06939 2-amino-3-ketobutyrate coenzyme A ligase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.6e-15 Score=175.91 Aligned_cols=279 Identities=16% Similarity=0.177 Sum_probs=183.9
Q ss_pred hHhhhHHHHHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEE
Q 001989 204 EIAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKV 283 (985)
Q Consensus 204 e~sqg~l~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v 283 (985)
+..+|..+...++++.+++++|.+ .++ ++.+|+.+..+++.++ . ++||+|++++..|+++...++. .|.++
T Consensus 80 ~~~~G~~~l~~~l~~~la~~~g~~-~~i-~~tsG~~a~~~~~~~l-~--~~gd~vi~~~~~~~~~~~~~~~----~~~~~ 150 (397)
T PRK06939 80 RFICGTQDLHKELEEKLAKFLGTE-DAI-LYSSCFDANGGLFETL-L--GKEDAIISDALNHASIIDGVRL----CKAKR 150 (397)
T ss_pred ccccCCcHHHHHHHHHHHHHhCCC-cEE-EEcChHHHHHHHHHHh-C--CCCCEEEEEhhhhHHHHHHHHh----cCCce
Confidence 456788888888999999999976 344 4444566666655443 2 4899999999999999888753 34455
Q ss_pred EEe---Cchhhhc-cC----C--CEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCCCCC-------
Q 001989 284 VVS---DLKDIDY-KS----G--DVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKPPG------- 345 (985)
Q Consensus 284 ~~v---~~~~l~~-l~----~--~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~~~~------- 345 (985)
+.+ +++++++ +. + ++++|++.+. |.+|.+.|+++|.++|+++|+++++| +..+.|.+...+
T Consensus 151 ~~~~~~d~~~l~~~i~~~~~~~~~~~~v~~~~v~~~~G~~~~~~~l~~la~~~~~~li~D-e~~~~g~~~~~~~~~~~~~ 229 (397)
T PRK06939 151 YRYANNDMADLEAQLKEAKEAGARHKLIATDGVFSMDGDIAPLPEICDLADKYDALVMVD-DSHAVGFVGENGRGTVEHF 229 (397)
T ss_pred EEeCCCCHHHHHHHHHhhhccCCCCeEEEEecCcCCCCCcCCHHHHHHHHHHhCCEEEEE-CcccccCcCCCCCCHHHHc
Confidence 544 4556655 43 3 6777776543 67899999999999999999999994 344444332111
Q ss_pred --cccceEEEecC-ccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccc
Q 001989 346 --ELGADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICT 422 (985)
Q Consensus 346 --~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t 422 (985)
..++|++++|. |+|++ +.+|++++++++++.+-.. ... +.+ +++ +.
T Consensus 230 ~~~~~~~i~~~S~sK~~~g------~r~G~v~~~~~~~~~l~~~---------~~~-~~~-------------~~~--~~ 278 (397)
T PRK06939 230 GVMDRVDIITGTLGKALGG------ASGGYTAGRKEVIDWLRQR---------SRP-YLF-------------SNS--LA 278 (397)
T ss_pred CCCCCCcEEEEECHHHhCc------cCceEEEeCHHHHHHHHHh---------Ccc-ccc-------------cCC--CC
Confidence 12579999997 87742 2348999888877665110 000 100 011 11
Q ss_pred hhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCCCcceEEEecCC---HHHHHHHHHHcCcee
Q 001989 423 AQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDTVKVKCAD---AHAIASAAYKIEMNL 499 (985)
Q Consensus 423 ~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~---~~~v~~~L~~~GI~~ 499 (985)
++...+..+++ .++. + .+++.++..++.+++++.|+++| +++.. +...-+.+..+. ..++.+.|.++||.+
T Consensus 279 ~~~~~a~~~al--~~~~-~-~~~~~~~~~~~~~~l~~~L~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~L~~~gI~v 352 (397)
T PRK06939 279 PAIVAASIKVL--ELLE-E-SDELRDRLWENARYFREGMTAAG-FTLGP-GEHPIIPVMLGDAKLAQEFADRLLEEGVYV 352 (397)
T ss_pred HHHHHHHHHHH--HHHh-c-CHHHHHHHHHHHHHHHHHHHHcC-CCcCC-CCCCEEEEEECCHHHHHHHHHHHHHCCceE
Confidence 12222233333 3332 2 25677888899999999999887 76543 211223233332 678999999999977
Q ss_pred eee-------cCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 500 RVV-------DSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 500 ~~~-------~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
... ..+.+|++++.++|++||+++++.|..
T Consensus 353 ~~~~~~~~~~~~~~iRi~~~~~~~~~~i~~~l~~L~~ 389 (397)
T PRK06939 353 IGFSFPVVPKGQARIRTQMSAAHTKEQLDRAIDAFEK 389 (397)
T ss_pred eeeCCCCCCCCCceEEEEECCCCCHHHHHHHHHHHHH
Confidence 432 125799999999999999999999974
|
|
| >PRK05968 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=8e-16 Score=177.49 Aligned_cols=274 Identities=18% Similarity=0.130 Sum_probs=192.8
Q ss_pred HHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCch---
Q 001989 213 LLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDLK--- 289 (985)
Q Consensus 213 i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~~--- 289 (985)
..++++.+|+++|.+. +.++.+|++++.++++++ . ++||+||++...|+++...+...++..|++++++|.+
T Consensus 65 ~~~le~~lA~l~g~~~--av~~~sG~~Ai~~al~al-~--~~Gd~Vl~~~~~y~~t~~~~~~~~~~~G~~v~~vd~~d~~ 139 (389)
T PRK05968 65 VRAFEEMLAKLEGAED--ARGFASGMAAISSTVLSF-V--EPGDRIVAVRHVYPDAFRLFETILKRMGVEVDYVDGRDEE 139 (389)
T ss_pred HHHHHHHHHHHhCCCc--EEEECCHHHHHHHHHHHH-h--CCCCEEEEeCCCchHHHHHHHHHHHHcCceEEEeCCCCHH
Confidence 5568899999999975 456788887776666554 2 3899999999999998877766666789999998764
Q ss_pred hhhc-cCCCEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCCCCCcccceEEEecC-ccccccCCCC
Q 001989 290 DIDY-KSGDVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKPPGELGADIVVGSA-QRFGVPMGYG 366 (985)
Q Consensus 290 ~l~~-l~~~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~~~~~~GaDi~v~s~-k~lg~P~~~G 366 (985)
++++ + ++|++|++++| |..+.+.|+++|+++||++|++++||. .++.+....|.++|+|+++.|. |.|++| |
T Consensus 140 ~l~~~i-~~tklV~ie~pt~~~~~~~dl~~i~~la~~~gi~vivD~-a~a~~~~~~p~~~g~Divv~S~tK~l~g~---~ 214 (389)
T PRK05968 140 AVAKAL-PGAKLLYLESPTSWVFELQDVAALAALAKRHGVVTMIDN-SWASPVFQRPITLGVDLVIHSASKYLGGH---S 214 (389)
T ss_pred HHHHhc-ccCCEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEEC-CCcchhccCchhcCCcEEEeeccccccCC---C
Confidence 4555 6 67899999998 778999999999999999999999953 4555555556789999999998 777643 3
Q ss_pred CCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcchHHHH
Q 001989 367 GPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTI 446 (985)
Q Consensus 367 GP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i 446 (985)
++.+|+++.++++++++... + ....| +..++ ..|++ ...+-+.+..+
T Consensus 215 ~~~gG~i~~~~~~~~~l~~~--------------------~----~~~~g----~~~~~---~~A~~--~l~~L~tl~~r 261 (389)
T PRK05968 215 DTVAGVVAGSKEHIARINAE--------------------A----YPYLG----AKLSP---FEAWL--LLRGLRTLPLR 261 (389)
T ss_pred CeEEEEEEECHHHHHHHHHH--------------------H----HHhCC----CCCCh---HHHHH--HHcccCcHHHH
Confidence 45568888888776554100 0 00001 00011 12222 34445567778
Q ss_pred HHHHHHHHHHHHHHHhcCCCeEEcC-C--C---------CcceEEEecCC---HHHHHHHHHHcCceee-----e-----
Q 001989 447 AQRVHGLAGTFALGLKKLGTVEVQG-L--P---------FFDTVKVKCAD---AHAIASAAYKIEMNLR-----V----- 501 (985)
Q Consensus 447 ~~~~~~~a~~l~~~L~~~g~~~~~~-~--~---------~~~~~~~~~~~---~~~v~~~L~~~GI~~~-----~----- 501 (985)
.++..+++.++++.|+++.+++.+. + + +...|+|..++ +.++.++|...++-++ .
T Consensus 262 ~~~~~~~a~~la~~L~~~p~v~~v~~p~l~~~~~~~~~g~g~~~sf~~~~~~~~~~f~~~L~~~~~~~s~G~~~slv~p~ 341 (389)
T PRK05968 262 MKAHEASALEIARRLKAHPVVERVCHPALANHPPAGLSGTSGLFSFIFREGIDVRAFADALKLFRLGVSWGGHESLVVPA 341 (389)
T ss_pred HHHHHHHHHHHHHHHHhCCCccEEECCCCCCChHHhCCCCceEEEEEECCHHHHHHHHHhCCccEEecCCCCCCceeeeC
Confidence 8888899999999999885465432 1 1 12257777653 6677788866554211 0
Q ss_pred -----------------ecCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 502 -----------------VDSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 502 -----------------~~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
+.++.+|+|++..++++=|+.|-++|..
T Consensus 342 ~~~~~~~~~~~~~~~~gi~~~liR~SvGlE~~~dl~~dl~~al~~ 386 (389)
T PRK05968 342 EVVLQQKAQPNSAARFGVSPRSVRLHVGLEGTEALWADLEQALAA 386 (389)
T ss_pred cccccccCCHHHHHhcCCCCCeEEEEeccCCHHHHHHHHHHHHHH
Confidence 0146899999999888778888888763
|
|
| >PRK06207 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.1e-15 Score=175.51 Aligned_cols=305 Identities=14% Similarity=0.146 Sum_probs=193.6
Q ss_pred hhHHHHHHHHHHHHHHHhCCC--c-cceecCcH-HHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcE
Q 001989 628 QGYQEMFNNLGEWLCTITGFD--S-FSLQPNAG-AAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMK 703 (985)
Q Consensus 628 ~G~~~~~~e~~~~la~l~G~~--~-~~~~~~sG-a~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~ 703 (985)
+|..++.+.+.+++++.+|.+ . ..+..++| +++...+ ++.+. .++|+|+++++.|..+...++..|.+
T Consensus 78 ~G~~~LR~aia~~l~~~~g~~~~~~~~I~it~Ga~~al~~~---~~~l~-----~~Gd~Vlv~~P~y~~~~~~~~~~g~~ 149 (405)
T PRK06207 78 RGDADIRELLAARLAAFTGAPVDAADELIITPGTQGALFLA---VAATV-----ARGDKVAIVQPDYFANRKLVEFFEGE 149 (405)
T ss_pred CCCHHHHHHHHHHHHHHhCCCCCCCCCEEEeCCcHHHHHHH---HHHhc-----CCCCEEEEeCCCchhHHHHHHHcCCE
Confidence 576777778888888888853 3 44444444 4454333 33221 47899999988887777778899999
Q ss_pred EEEEcCC-----CCCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCcccccc--CHHHHHHHHHHcCCEEEEEccccccc-c
Q 001989 704 IVSVGTD-----AKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEE--GIDEICKIIHDNGGQVYMDGANMNAQ-V 774 (985)
Q Consensus 704 vv~v~~d-----~~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~--di~eI~~la~~~galliVD~a~~~~~-~ 774 (985)
++.++++ .+..+|+++|+++++ +++++|++++| |++|.+.+ ++++|+++|+++|+++++|.++..-. .
T Consensus 150 v~~v~~~~~~~~~~~~~d~~~l~~~~~---~~~k~v~l~~P~NPTG~~~s~e~l~~l~~~a~~~~~~iI~De~Y~~~~~~ 226 (405)
T PRK06207 150 MVPVQLDYLSADKRAGLDLDQLEEAFK---AGVRVFLFSNPNNPAGVVYSAEEIAQIAALARRYGATVIVDQLYSRLLYD 226 (405)
T ss_pred EEEEeccccCcccCCCcCHHHHHHhhh---hcCeEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccccccC
Confidence 9999875 246799999999997 67889999999 57999862 48889999999999999999874211 1
Q ss_pred C--CCCCCccCCc----EEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchh
Q 001989 775 G--LTSPGYIGAD----VCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWG 848 (985)
Q Consensus 775 ~--l~~pg~~g~D----i~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g 848 (985)
+ ......+..| +++.|++|+|++| |.++|++++++++...+.... ....++.+...
T Consensus 227 ~~~~~~~~~~~~~~~~vi~i~SfSK~~~lp----GlRiG~ii~~~~l~~~~~~~~--------------~~~~~~~~~~~ 288 (405)
T PRK06207 227 GTSYTHLRALPIDPENVITIMGPSKTESLS----GYRLGVAFGSPAIIDRMEKLQ--------------AIVSLRAAGYS 288 (405)
T ss_pred CCCCCchhcCCCCcCcEEEEecchhhccCc----ccceEEEEcCHHHHHHHHHHH--------------hHhccCCCHHH
Confidence 1 1111111112 6788889998665 678999998876654432100 00011111111
Q ss_pred hhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhccCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHH
Q 001989 849 SALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLM 928 (985)
Q Consensus 849 ~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~ 928 (985)
+. ++..++.. +..-+.+..++..++++++.+.|++...+.+..+.+..+ +.++++. .+.+..+++++|.
T Consensus 289 q~----a~~~~l~~-~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~p~gg~f--l~~~l~~----~~~~~~~~~~~l~ 357 (405)
T PRK06207 289 QA----VLRTWFSE-PDGWMKDRIARHQAIRDDLLRVLRGVEGVFVRAPQAGSY--LFPRLPR----LAVSLHDFVKILR 357 (405)
T ss_pred HH----HHHHHHhC-cHHHHHHHHHHHHHHHHHHHHHHhcCCCceecCCCeeEE--EEEeCcc----cCCCHHHHHHHHH
Confidence 11 11222321 212244555556667788888887521222222222222 3455541 1246788999997
Q ss_pred -HCCCccCCC-CC--CCCCEEEEeccCCCCHHHHHHHHccCChhHHHHhhcc
Q 001989 929 -DYGFHGPTM-SW--PVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRLKM 976 (985)
Q Consensus 929 -~~Gi~~~~~-~~--p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~~~ 976 (985)
++||.+... .| +.++++||++.. +.++++. .++.|.+.+++.|+
T Consensus 358 ~~~gV~v~pG~~F~~~~~~~~Ris~~~--~~~~l~~--al~rl~~~l~~~~~ 405 (405)
T PRK06207 358 LQAGVIVTPGTEFSPHTADSIRLNFSQ--DHAAAVA--AAERIAQLIERYRA 405 (405)
T ss_pred HhcCEEEeCchHhCCCCCCeEEEEecC--CHHHHHH--HHHHHHHHHHHhhC
Confidence 679986532 22 235899999985 6888888 77888888876653
|
|
| >PRK06062 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.4e-15 Score=178.43 Aligned_cols=330 Identities=15% Similarity=0.135 Sum_probs=199.9
Q ss_pred ccccccccCCCccccccccccccccccCCCCchhhhhhHHHHHHHHHHHHHHHhCCC-ccceecCcHHHHHHHHHHHHHH
Q 001989 592 IPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFD-SFSLQPNAGAAGEYAGLMVIRA 670 (985)
Q Consensus 592 ~~lG~~t~~~~~~~~~~~~~~~~f~~~~p~~p~e~~~G~~~~~~e~~~~la~l~G~~-~~~~~~~sGa~a~~a~l~air~ 670 (985)
..||++++.+..+...+......+...++. +...++.+.|++++..+ ...++.+||++|++++++.+|.
T Consensus 65 ~~lGh~~p~v~~Ai~~q~~~~~~~~~~~~~----------~~~~~lae~L~~~~p~~~~~v~f~~SGsEAve~AlklAr~ 134 (451)
T PRK06062 65 TNIGHQHPKVVAAIQEQAARLCTVAPAHAN----------DARSEAARLIAERAPGDLSKVFFTNGGADANEHAVRMARL 134 (451)
T ss_pred hcCCCCCHHHHHHHHHHHHhcCCcCCccCC----------HHHHHHHHHHHHhCCCCCCEEEEcCChHHHHHHHHHHHHH
Confidence 458988887776655543222222111111 22346778888887432 2356789999999999999987
Q ss_pred HHHhcCCCCCCEEEE-cCCCCcccHHHHHHCCc-----------EEEEEcCCCCC------CCC-------HHHHHHHHH
Q 001989 671 YHKARGDHHRNVCII-PVSAHGTNPATAAMCGM-----------KIVSVGTDAKG------NIN-------IEELRKAAE 725 (985)
Q Consensus 671 ~~~~~g~~~~~~IIv-~~~~Hg~~~~~a~~~G~-----------~vv~v~~d~~g------~iD-------~e~L~~~i~ 725 (985)
| +++.+||. ...+||....+....|- .+..++..... ..| +++|+++++
T Consensus 135 ~------tgr~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~le~~l~ 208 (451)
T PRK06062 135 H------TGRPKVLSAYRSYHGGTGSAINLTGDPRRWPNDTGRAGVVHFFGPFLYRSEFHATTEEEECERALAHLERVIE 208 (451)
T ss_pred h------hCCceEEEEeCCCCCCCHHHHhhcCCcccccCCCCCCCCEEeCCCCccccccCCCChHHHHHHHHHHHHHHHH
Confidence 6 23556765 66899988666543221 12223221111 123 678888886
Q ss_pred hc-CCCEEEEEEEcC-CCccccccC----HHHHHHHHHHcCCEEEEEccccccccCCCCCCcc--------CCcEEEeCC
Q 001989 726 AN-RDNLSTLMVTYP-STHGVYEEG----IDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYI--------GADVCHLNL 791 (985)
Q Consensus 726 ~~-~~~t~~Vvv~~p-n~~G~i~~d----i~eI~~la~~~galliVD~a~~~~~~~l~~pg~~--------g~Di~~~s~ 791 (985)
.. .+++++|+++-. ...|++. + +++|.++|+++|+++|+|+++. |+.+.|.+ .+|+++++
T Consensus 209 ~~~~~~iAaviiEPv~g~gG~~~-p~~~yl~~lr~lc~~~g~lLI~DEV~t----GfGRtG~~~a~~~~gv~PDi~t~g- 282 (451)
T PRK06062 209 LEGPSTIAAILLESVPGTAGILV-PPPGYLAGVRELCDRHGIVLIADEVMA----GFGRTGKWFAIEHFGVVPDLITFA- 282 (451)
T ss_pred hcCCCceEEEEEccccCCCCccc-CCHHHHHHHHHHHHHcCCEEEeecccc----CCCcCcHHHHHHhcCCCCCeeeec-
Confidence 43 256788888653 3457775 5 9999999999999999999873 34444432 37988763
Q ss_pred cccccccCCCCC-CceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHHHHH
Q 001989 792 HKTFCIPHGGGG-PGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTE 870 (985)
Q Consensus 792 hK~l~~p~g~GG-Pg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl~~ 870 (985)
|.++ +|- |-.+ +++++++.+.+....+ ...+++.|+++.++++.+.|..+..+++.+
T Consensus 283 -K~lg----gG~~Piga-v~~~~~i~~~~~~~~~----------------~~~~T~~gnpl~~Aaa~a~L~~l~~~~l~~ 340 (451)
T PRK06062 283 -KGVN----SGYVPLGG-VAISEAIAATFADRPY----------------PGGLTYSGHPLACAAAVATINAMEEEGIVE 340 (451)
T ss_pred -hhhh----cCCcCcEE-EEEcHHHHHHhccCCC----------------CCCCCCCCCHHHHHHHHHHHHHHHhcCHHH
Confidence 7763 331 5544 4556666654421100 011235567788888889999887665443
Q ss_pred HHHHHHHHH-HHHHHHhhcc---CCee--ecCCCCceeeEEEEEecCc-ccc-CCC-----CHHHHHHHHHHCCCccCCC
Q 001989 871 ASKIAILNA-NYMAKRLEKH---YPIL--FRGVNGTVAHEFIVDLRGL-KNT-AGI-----EPEDVAKRLMDYGFHGPTM 937 (985)
Q Consensus 871 ~~~~~~~~a-~~l~~~L~~g---~~l~--~~~~~~~~~~~~iv~~~~~-~~~-~g~-----~~~~v~~~L~~~Gi~~~~~ 937 (985)
+..+.. .+|.++|++. ++++ ..+. + .+..+.+.-+.. +.. ... ....+.+.|.++|+++...
T Consensus 341 ---~~~~~G~~~l~~~L~~l~~~~~~v~~vrG~-G-l~~gve~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gvl~~~~ 415 (451)
T PRK06062 341 ---NAARIGAEVLGPGLRELAERHPSVGEVRGL-G-VFWALELVADRETREPLAPYGASSAAMAAVKAACKERGLLPFVN 415 (451)
T ss_pred ---HHHHHHHHHHHHHHHHHHhcCCcEEeEecc-c-cEEEEEEcccccccCCCcccchhhHHHHHHHHHHHHCCcEEeec
Confidence 445555 4677777642 2321 1121 2 221222211100 000 000 1347888899999986421
Q ss_pred CCCCCCEEEEeccCCCCHHHHHHHHccCChhHHHHhhcc
Q 001989 938 SWPVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRLKM 976 (985)
Q Consensus 938 ~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~~~ 976 (985)
.+.+|++|+..+|++|||+ +++++++++..++.
T Consensus 416 ----~~~lrl~ppl~~t~~eid~--~~~~l~~~l~~~~~ 448 (451)
T PRK06062 416 ----GNRIHVVPPCTVTEDEVRE--GLAILDAALAVADA 448 (451)
T ss_pred ----CCEEEEECCccCCHHHHHH--HHHHHHHHHHHhhh
Confidence 4789999999999999999 88999999887653
|
|
| >PLN02263 serine decarboxylase | Back alignment and domain information |
|---|
Probab=99.71 E-value=8.7e-15 Score=168.57 Aligned_cols=283 Identities=14% Similarity=0.103 Sum_probs=191.5
Q ss_pred hHHHHHHHHHHHHHHhcCCCCc--ceeeccchHHHHHHHH-HHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEE
Q 001989 208 GRLESLLNFQTMIADLTGLPMS--NASLLDEGTAAAEAMA-MCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVV 284 (985)
Q Consensus 208 g~l~~i~e~q~~ia~L~g~~~~--~~sl~~~~ta~~ea~~-~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~ 284 (985)
++.+...+.-+++++|+|.+.. ...+++|||.+.-..+ .|+... ++..|++|+..|.|+.+.++. .|++++
T Consensus 130 ~s~~~E~~Vi~wla~L~g~p~~~~~G~vtsGGTEaNL~Al~aARe~~--~~~vvy~S~~aH~Sv~KAa~l----lgi~~~ 203 (470)
T PLN02263 130 HSRQFEVGVLDWFARLWEIEKNEYWGYITNCGTEGNLHGILVGREVF--PDGILYASRESHYSVFKAARM----YRMECV 203 (470)
T ss_pred hHHHHHHHHHHHHHHHhCCCCCCCeEEEeCcHHHHHHHHHHHHHhhc--CCcEEEEcCCccHHHHHHHHh----cCCcce
Confidence 4566777788999999999753 5778888885433322 233221 344789999999999999754 577777
Q ss_pred EeCc--------hhhhc-cCCC---EeEEEEEcC-CCCeeeccHHHHHHHHHhCCc-----EEEEEecCccccC--CCC-
Q 001989 285 VSDL--------KDIDY-KSGD---VCGVLVQYP-GTEGEVLDYGDFIKNAHANGV-----KVVMATDLLALTI--LKP- 343 (985)
Q Consensus 285 ~v~~--------~~l~~-l~~~---t~~V~v~~p-n~~G~v~di~~I~~~a~~~ga-----lliV~a~~~~lg~--l~~- 343 (985)
.++. ++|++ +..+ ...|+.+.+ +.+|.++||++|+++|+++|+ +++||+-..+.-+ +..
T Consensus 204 ~Vp~d~~g~mD~~aL~~aI~~d~~~P~iVvataGTT~~GAiDpi~eIa~i~~~~g~~~~~iwlHVDAA~GG~~lPf~~~~ 283 (470)
T PLN02263 204 KVDTLVSGEIDCADFKAKLLANKDKPAIINVNIGTTVKGAVDDLDLVIKTLEECGFSQDRFYIHCDGALFGLMMPFVKRA 283 (470)
T ss_pred EeccCCCCcCcHHHHHHHHHhCCCCcEEEEEEecCCCCcCCCCHHHHHHHHHHcCCccCCeeEEEeccchhhHhhhcccc
Confidence 7764 45665 5433 456666776 579999999999999999997 9999652212111 111
Q ss_pred ---CCcccceEEEecC-ccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCC
Q 001989 344 ---PGELGADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSN 419 (985)
Q Consensus 344 ---~~~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsn 419 (985)
....++|-+..++ |+++.|++ +|++.+|++.++.+... ..|.- .+...+ .|+-+
T Consensus 284 ~~~df~~~vDSIsvD~HK~l~~P~~-----cgvll~R~~~~~~~~~~-----------~~Yl~---~~d~ti---~gSR~ 341 (470)
T PLN02263 284 PKVTFKKPIGSVSVSGHKFVGCPMP-----CGVQITRMEHINVLSSN-----------VEYLA---SRDATI---MGSRN 341 (470)
T ss_pred cccCCCcCccEEEECCccccCCCcC-----EEEEEEehhhHhhhccC-----------hHhhC---CCCCCc---CCCCC
Confidence 1233489999999 66677864 67888887665433110 00100 000000 11111
Q ss_pred ccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCCCcceEEEecCCHHHHHHHHHHcCcee
Q 001989 420 ICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDTVKVKCADAHAIASAAYKIEMNL 499 (985)
Q Consensus 420 i~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~~~L~~~GI~~ 499 (985)
+..++.....+..+|.+|++++.+++.++|+|+.++|++.| ++++..|...+|+|..+... +..+||.+
T Consensus 342 -----g~~al~lW~~L~~~G~~G~~~~i~~~~~~A~~l~~~l~~~g-~~~~~~p~s~~V~f~~p~~~-----~~~~gW~L 410 (470)
T PLN02263 342 -----GHAPIFLWYTLNRKGYRGFQKEVQKCLRNAHYLKDRLREAG-ISAMLNELSSTVVFERPKDE-----EFVRRWQL 410 (470)
T ss_pred -----cHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHhCC-CeEEeCCCceEEEEecCchH-----HhhcceEE
Confidence 11122222236899999999999999999999999999997 77775566677888765321 23478988
Q ss_pred eeecCCeEEEEeccCCCHHHHHHHHHHHhCC
Q 001989 500 RVVDSNTVTASFDETTTLEDVDKLFIVFAGG 530 (985)
Q Consensus 500 ~~~~~~~lris~t~~~t~edId~li~aL~~~ 530 (985)
... +..++++++...|++.+|+|++.|.+.
T Consensus 411 ~~~-~~~~Hivvmphv~~~~id~fi~DL~~~ 440 (470)
T PLN02263 411 ACQ-GNIAHVVVMPSVTIEKLDYFLKELVEK 440 (470)
T ss_pred ccC-CCcEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 763 467999999999999999999999865
|
|
| >cd00615 Orn_deC_like Ornithine decarboxylase family | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.1e-16 Score=178.00 Aligned_cols=165 Identities=20% Similarity=0.207 Sum_probs=128.9
Q ss_pred HHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcCCCC-
Q 001989 634 FNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAK- 712 (985)
Q Consensus 634 ~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~d~~- 712 (985)
+.++++.+++++|.+.+.+.++++++|+.++++++. .++++|++++..|.++...+...|+++++++++.+
T Consensus 61 i~~~~~~~A~~~ga~~~~~~~~Gst~a~~~~l~al~--------~~gd~Vlv~~~~h~s~~~~~~~~g~~~~~v~~~~~~ 132 (294)
T cd00615 61 IKEAQELAARAFGAKHTFFLVNGTSSSNKAVILAVC--------GPGDKILIDRNCHKSVINGLVLSGAVPVYLKPERNP 132 (294)
T ss_pred HHHHHHHHHHHhCCCCEEEEcCcHHHHHHHHHHHcC--------CCCCEEEEeCCchHHHHHHHHHCCCEEEEecCccCc
Confidence 678999999999998766656777777765555432 47899999999898887778889999999977533
Q ss_pred -----CCCCHHHHHHHHHhcCCCEEEEEEEcCCCccccccCHHHHHHHHHHcCCEEEEEccccccc--cC-CC-CCCccC
Q 001989 713 -----GNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQ--VG-LT-SPGYIG 783 (985)
Q Consensus 713 -----g~iD~e~L~~~i~~~~~~t~~Vvv~~pn~~G~i~~di~eI~~la~~~galliVD~a~~~~~--~~-l~-~pg~~g 783 (985)
+.+|+++++++++++ +++++|++++||++|.+. |+++|+++||++|++++||++|.... .+ +. ....++
T Consensus 133 ~~~~~~~i~~~~l~~~l~~~-~~~k~v~l~~p~~~G~~~-dl~~I~~~~~~~g~~livDeA~~~~~~~~~~~~~~~~~~~ 210 (294)
T cd00615 133 YYGIAGGIPPETFKKALIEH-PDAKAAVITNPTYYGICY-NLRKIVEEAHHRGLPVLVDEAHGAHFRFHPILPSSAAMAG 210 (294)
T ss_pred ccCcCCCCCHHHHHHHHHhC-CCceEEEEECCCCCCEec-CHHHHHHHHHhcCCeEEEECcchhhhccCcccCcchhhcC
Confidence 479999999999742 578999999999999998 89999999999999999999985211 11 11 123468
Q ss_pred CcEEEeCCcccccccCCCCCC-ceEEEEEccc
Q 001989 784 ADVCHLNLHKTFCIPHGGGGP-GMGPIGVKKH 814 (985)
Q Consensus 784 ~Di~~~s~hK~l~~p~g~GGP-g~G~i~~~~~ 814 (985)
+|+++.|+||++ +|| ++|++.+++.
T Consensus 211 ~div~~S~hK~l------~g~~~~~~l~~~~~ 236 (294)
T cd00615 211 ADIVVQSTHKTL------PALTQGSMIHVKGD 236 (294)
T ss_pred CcEEEEchhccc------chHhHHHHHHhCCC
Confidence 999999999997 344 4567766654
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life. |
| >cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.2e-15 Score=173.10 Aligned_cols=215 Identities=22% Similarity=0.208 Sum_probs=158.8
Q ss_pred HHHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCch-
Q 001989 211 ESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDLK- 289 (985)
Q Consensus 211 ~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~~- 289 (985)
....++++.+|+++|.+. +.++++|++++.+++.++ . ++||+|+++...|......+...++..|++++++|.+
T Consensus 40 p~~~~le~~la~l~g~~~--a~~~~sG~~Ai~~~l~~l-~--~~gd~Vl~~~~~y~~~~~~~~~~~~~~g~~~~~v~~~d 114 (369)
T cd00614 40 PTVDALEKKLAALEGGEA--ALAFSSGMAAISTVLLAL-L--KAGDHVVASDDLYGGTYRLFERLLPKLGIEVTFVDPDD 114 (369)
T ss_pred hhHHHHHHHHHHHHCCCC--EEEEcCHHHHHHHHHHHH-c--CCCCEEEECCCCcchHHHHHHHHHhhcCeEEEEeCCCC
Confidence 344567889999999865 678889998888777665 2 3899999999999998887776666789999998764
Q ss_pred --hhhc-cCCCEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCCCCCcccceEEEecC-ccccccCC
Q 001989 290 --DIDY-KSGDVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKPPGELGADIVVGSA-QRFGVPMG 364 (985)
Q Consensus 290 --~l~~-l~~~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~~~~~~GaDi~v~s~-k~lg~P~~ 364 (985)
++++ +++++++|++.+| |++|.+.|+++|+++||++|++++|| +.++.+....|.++|+|++++|. |.++++
T Consensus 115 ~~~l~~~i~~~~~~v~~e~~~np~g~~~dl~~i~~la~~~g~~livD-~t~~~~~~~~~~~~g~Divv~S~tK~l~g~-- 191 (369)
T cd00614 115 PEALEAAIKPETKLVYVESPTNPTLKVVDIEAIAELAHEHGALLVVD-NTFATPYLQRPLELGADIVVHSATKYIGGH-- 191 (369)
T ss_pred HHHHHHhcCCCCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEE-CCCcchhcCChhhhCCcEEEeccceeccCC--
Confidence 4555 7788999999988 78999999999999999999999994 46666666667789999999998 777532
Q ss_pred CCCCcEEEEEEch-hhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcchH
Q 001989 365 YGGPHAAFLATSQ-EYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGL 443 (985)
Q Consensus 365 ~GGP~~G~l~~~~-~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl 443 (985)
|..-+|++.+++ ++.+++.. .++.-|+ .. ++. .+ |+...+-+.+
T Consensus 192 -~~~~gG~v~~~~~~l~~~l~~-------------------------~~~~~g~-~~---~p~---~a--~~~l~~l~tl 236 (369)
T cd00614 192 -SDVIAGVVVGSGEALIQRLRF-------------------------LRLALGT-IL---SPF---DA--WLLLRGLKTL 236 (369)
T ss_pred -CCceEEEEEeCcHHHHHHHHH-------------------------HHHhhCC-CC---CHH---HH--HHHHcCCCCH
Confidence 223368888876 66554410 0011111 01 122 11 1234445667
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCeE
Q 001989 444 KTIAQRVHGLAGTFALGLKKLGTVE 468 (985)
Q Consensus 444 ~~i~~~~~~~a~~l~~~L~~~g~~~ 468 (985)
....++..+++.+++++|++.++++
T Consensus 237 ~~r~~~~~~na~~la~~L~~~~~v~ 261 (369)
T cd00614 237 PLRMERHSENALKVAEFLEKHPKVE 261 (369)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCcc
Confidence 7788889999999999999986454
|
This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life. |
| >PRK06105 aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.8e-15 Score=177.81 Aligned_cols=356 Identities=16% Similarity=0.167 Sum_probs=210.8
Q ss_pred HHHHHHHHHHhccccCcccccccccccccCCCccccccccccccccccCCCCchhhhhhHHHHHHHHHHHHHHHhCCCc-
Q 001989 571 HELLRYIHLLQSKELSLCHSMIPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFDS- 649 (985)
Q Consensus 571 ~e~~~~l~~l~~~~~~~~~~~~~lG~~t~~~~~~~~~~~~~~~~f~~~~p~~p~e~~~G~~~~~~e~~~~la~l~G~~~- 649 (985)
.+..+|++..++-. ...||++++.+..+...+....+.+.....+. .+...++.+.|++++..+.
T Consensus 45 ~dG~~ylD~~~g~~------~~~lGh~~p~i~~Ai~~q~~~~~~~~~~~~~~--------~~~~~~lae~L~~~~p~~~~ 110 (460)
T PRK06105 45 DAGKRYIEGMAGLW------SVALGFSEQRLVEAAARQMKKLPFYHTFSHKS--------HGPVIDLAEKLVAMAPVPMS 110 (460)
T ss_pred CCCCEEEEcchhHH------hccCCCCCHHHHHHHHHHHHhCCCeecccccC--------CHHHHHHHHHHHHhCCCCCC
Confidence 34455555544322 24588887777666554432221111111111 1234478888988875432
Q ss_pred cceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEE-cCCCCcccHHHHHHCC------------cEEEEEcCCCCCC--
Q 001989 650 FSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCII-PVSAHGTNPATAAMCG------------MKIVSVGTDAKGN-- 714 (985)
Q Consensus 650 ~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv-~~~~Hg~~~~~a~~~G------------~~vv~v~~d~~g~-- 714 (985)
..++.+||++|++++++.+|.|...++..++.+||. ...+||....+....| ..+..+|......
T Consensus 111 ~v~f~~SGseAve~AlKlar~~~~~~g~t~r~~il~~~~~yHG~t~~a~s~t~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 190 (460)
T PRK06105 111 KVFFTNSGSEANDTVVKLVWYYNNALGRPEKKKIISRQRGYHGVTIASASLTGLPNNHRSFDLPLDRILHTGCPHYYRFG 190 (460)
T ss_pred EEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCccCCcchhheeccCCcccccccCCCCCCCEEcCCCcccccc
Confidence 346779999999999999987754555334566775 6789997754422111 1233333311000
Q ss_pred -----------CCHHHHHHHHHhc-CCCEEEEEEEcC-CCccccccC----HHHHHHHHHHcCCEEEEEccccccccCCC
Q 001989 715 -----------INIEELRKAAEAN-RDNLSTLMVTYP-STHGVYEEG----IDEICKIIHDNGGQVYMDGANMNAQVGLT 777 (985)
Q Consensus 715 -----------iD~e~L~~~i~~~-~~~t~~Vvv~~p-n~~G~i~~d----i~eI~~la~~~galliVD~a~~~~~~~l~ 777 (985)
..++++++++.+. .+++++|+++-. ...|++. + +++|.++|+++|+++|+|+++ .|++
T Consensus 191 ~~~~~~~~~~~~~~~~le~~~~~~~~~~iAavIvEPiqg~gG~~~-~~~~yl~~lr~lc~~~~~llI~DEv~----tG~G 265 (460)
T PRK06105 191 LPGESEEAFATRLANELEALILAEGPDTIAAFIGEPVMGAGGVIV-PPKTYWEKIQAVLRKYDILLVADEVI----CGFG 265 (460)
T ss_pred cCCCChHHHHHHHHHHHHHHHHHcCCCceEEEEEccccCCCCCcc-CCHHHHHHHHHHHHHcCCeEEEeccc----cCCC
Confidence 1246778877532 357888888753 3456665 4 899999999999999999887 3333
Q ss_pred CCCcc--------CCcEEEeCCcccccccCCCCC-CceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchh
Q 001989 778 SPGYI--------GADVCHLNLHKTFCIPHGGGG-PGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWG 848 (985)
Q Consensus 778 ~pg~~--------g~Di~~~s~hK~l~~p~g~GG-Pg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g 848 (985)
+.|.+ -+|+++++ |.++ +|. | +|.+++++++.+.+.... . ........+++.|
T Consensus 266 RtG~~f~~~~~~v~PDi~~~g--K~lg----gG~~P-~~av~~~~~i~~~~~~~~-~----------~~~~~~h~~T~~g 327 (460)
T PRK06105 266 RTGNMFGCETFGIKPDILVMS--KQLS----SSYQP-LSAVLMNEKVYDPIADES-G----------KIGTFGHGFTASG 327 (460)
T ss_pred cCchhhhHHhcCCCCCeeeee--cccc----cCccc-ceEEEEcHHHHHHHhccc-c----------cCcccccCCCCCC
Confidence 44322 37888764 7663 332 5 455556766655432110 0 0000011234566
Q ss_pred hhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhcc--CCee--ecCCCCceeeEEEEEecCccc-cCC-----C
Q 001989 849 SALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKH--YPIL--FRGVNGTVAHEFIVDLRGLKN-TAG-----I 918 (985)
Q Consensus 849 ~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~g--~~l~--~~~~~~~~~~~~iv~~~~~~~-~~g-----~ 918 (985)
+++.++++.+.|..+.++++ .++..++.++|.++|++. ++++ +.+. + .+. .+.+..-.. ... .
T Consensus 328 npl~~aaa~a~L~~i~~~~l---~~~v~~~g~~l~~~L~~l~~~~~v~~vrG~-G-l~~--gie~~~~~~~~~~~~~~~~ 400 (460)
T PRK06105 328 HPVAAAVALENLAIIEERDL---VGNAAERGARLQARLRALADHPLVGEVRGV-G-LIA--AVELVADKATKTPFEPPGK 400 (460)
T ss_pred CHHHHHHHHHHHHHHHhccH---HHHHHHHHHHHHHHHHHhhcCCCeEEEEec-c-eEE--EEEEecCcccCCCCCchhH
Confidence 78888888888988877654 446677888888888752 2221 1121 1 221 222210000 000 0
Q ss_pred CHHHHHHHHHHCCCccCCCCCCCCCEEEEeccCCCCHHHHHHHHccCChhHHHHhhcc
Q 001989 919 EPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRLKM 976 (985)
Q Consensus 919 ~~~~v~~~L~~~Gi~~~~~~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~~~ 976 (985)
....+.+.+.++|+++... .+.+|++|+...|++|||+ +++++.+++.+++.
T Consensus 401 ~a~~i~~~~~~~Gvl~~~~----g~~i~l~Ppl~it~~eid~--~~~~l~~~l~~~~~ 452 (460)
T PRK06105 401 VGARANAAAHEHGVISRAM----GDTLAFCPPLIITAAQVDE--MVDRFGRALDDVAA 452 (460)
T ss_pred HHHHHHHHHHHCCeEEEec----CCEEEEECCCccCHHHHHH--HHHHHHHHHHHHHH
Confidence 1346788888999988543 3689999999999999999 78899888877643
|
|
| >PRK05630 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.4e-15 Score=176.90 Aligned_cols=329 Identities=12% Similarity=0.125 Sum_probs=199.5
Q ss_pred ccccccccCCCccccccccccccccccCCCCchhhhhhHHHHHHHHHHHHHHHhCCC-ccceecCcHHHHHHHHHHHHHH
Q 001989 592 IPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFD-SFSLQPNAGAAGEYAGLMVIRA 670 (985)
Q Consensus 592 ~~lG~~t~~~~~~~~~~~~~~~~f~~~~p~~p~e~~~G~~~~~~e~~~~la~l~G~~-~~~~~~~sGa~a~~a~l~air~ 670 (985)
..||++++.+..+...+.............. +...++.+.++++++.. ...++.+||++|++++++.+|.
T Consensus 52 ~~lGh~~p~i~~ai~~q~~~~~~~~~~~~~~---------~~~~~lae~L~~~~p~~~~~v~f~~SGseA~e~AlklAr~ 122 (422)
T PRK05630 52 AAHGHGHPRLKAAAHKQIDTMSHVMFGGLTH---------EPAIKLTRKLLNLTDNGLDHVFYSDSGSVSVEVAIKMALQ 122 (422)
T ss_pred hcCCCCCHHHHHHHHHHHHhCCCcccCCcCC---------HHHHHHHHHHHhhCCCCcCEEEEeCCcHHHHHHHHHHHHH
Confidence 4578887777665544432211111101111 12346778888887432 2356789999999999999998
Q ss_pred HHHhcCCCCCCEEEE-cCCCCcccHHHHHHCC-------------cEEEEEcCCCCCCCC-------HHHHHHHHHhcCC
Q 001989 671 YHKARGDHHRNVCII-PVSAHGTNPATAAMCG-------------MKIVSVGTDAKGNIN-------IEELRKAAEANRD 729 (985)
Q Consensus 671 ~~~~~g~~~~~~IIv-~~~~Hg~~~~~a~~~G-------------~~vv~v~~d~~g~iD-------~e~L~~~i~~~~~ 729 (985)
|...+|..++.+||. ..++||....+....+ ..+..+|.......+ .+.+++.+. +
T Consensus 123 ~~~~~g~~~r~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~---~ 199 (422)
T PRK05630 123 YSKGQGHPERTRLLTWRSGYHGDTFAAMSVCDPEGGMHSLWKGTLPEQIFAPAPPVRGSSPQEISEYLRSLELLID---E 199 (422)
T ss_pred HHHhcCCCCCcEEEEECCCcCCccHHHhccCCCcccccccccccCCCCeEcCCCcccCCChHHHHHHHHHHHHHHh---h
Confidence 865445334566765 7789997655443221 122334432111112 244555555 6
Q ss_pred CEEEEEEEcC--CCcccccc---CHHHHHHHHHHcCCEEEEEccccccccCCCCCCcc--------CCcEEEeCCccccc
Q 001989 730 NLSTLMVTYP--STHGVYEE---GIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYI--------GADVCHLNLHKTFC 796 (985)
Q Consensus 730 ~t~~Vvv~~p--n~~G~i~~---di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~--------g~Di~~~s~hK~l~ 796 (985)
++++|+++-. ...|++.+ .+++|.++|+++|+++|+|+++ .|+.+.|.+ .+|++++ .|.++
T Consensus 200 ~iAAvi~EPi~qg~gG~~~~~~~~l~~lr~lc~~~g~llI~DEv~----tG~GrtG~~~a~~~~gv~PDi~t~--gK~l~ 273 (422)
T PRK05630 200 TVAAIIIEPIVQGAGGMRFHDVALIEGVRTLCDKHDILLIADEIA----TGFGRTGELFATLAAGVTPDIMCV--GKALT 273 (422)
T ss_pred ceEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEecce----eCCCcCchhhHHHhcCCCCCeeee--echhh
Confidence 8899988752 23465532 5899999999999999999987 333444432 3688865 37663
Q ss_pred ccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHHHHHHHHHHH
Q 001989 797 IPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAI 876 (985)
Q Consensus 797 ~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl~~~~~~~~ 876 (985)
+|-+-+|.+++++++.+.+.... +. .. ....+++.|++..++++.+.|+.+.++.+ .++..
T Consensus 274 ----gG~~p~~av~~~~~i~~~~~~~~-~~----------~~-~~h~~T~~g~Pla~aaa~aaL~~l~~~~~---~~~~~ 334 (422)
T PRK05630 274 ----GGFMSFAATLCTDKVAQLISTPN-GG----------GA-LMHGPTFMANPLACAVAHASLEIIETGMW---RKQVK 334 (422)
T ss_pred ----cCccccceeeccHHHHHHHhccC-CC----------Cc-cccCCCCcCCHHHHHHHHHHHHHHHhCcH---HHHHH
Confidence 23244566777877665442110 00 00 01123455677888888888888876644 34666
Q ss_pred HHHHHHHHHhhcc--CCee--ecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCCCCCCCEEEEeccCC
Q 001989 877 LNANYMAKRLEKH--YPIL--FRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTES 952 (985)
Q Consensus 877 ~~a~~l~~~L~~g--~~l~--~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~~p~~~~lris~t~~ 952 (985)
++.++|++.|++. ...+ +.+. + .+ +-+.+.. ......+.+.+.++|+++... .+.+|+.|+..
T Consensus 335 ~~g~~l~~~L~~l~~~~~v~~vRg~-G-l~--~~ie~~~-----~~~~~~~~~~~~~~Gl~~~~~----g~~l~~~PpL~ 401 (422)
T PRK05630 335 RIEAELIAGLSPLAHLPGVADVRVL-G-AI--GVVEMEQ-----PVDMEEATQAAVDHGVWLRPF----GRLVYVMPPYI 401 (422)
T ss_pred HHHHHHHHHHHHhhcCCCeeeeecc-c-cE--EEEEECC-----cccHHHHHHHHHHCCeEEEec----CCEEEEECCcc
Confidence 7778888877641 1111 1111 1 12 2233321 123568889999999988543 37899999999
Q ss_pred CCHHHHHHHHccCChhHHHH
Q 001989 953 ESKSWTGIVMLSSPSEKKLH 972 (985)
Q Consensus 953 ~t~eeId~~~~~~~l~~~~~ 972 (985)
.|++|||+ ++++|++++.
T Consensus 402 it~~~i~~--~~~~l~~al~ 419 (422)
T PRK05630 402 TTSEQIAQ--ICAALAAAVK 419 (422)
T ss_pred CCHHHHHH--HHHHHHHHHh
Confidence 99999999 7788888775
|
|
| >PRK05639 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.5e-15 Score=176.24 Aligned_cols=330 Identities=15% Similarity=0.155 Sum_probs=201.6
Q ss_pred ccccccccCCCccccccccccccccc-cCCCCchhhhhhHHHHHHHHHHHHHHHhCCC-ccceecCcHHHHHHHHHHHHH
Q 001989 592 IPLGSCTMKLNATTEMMPVTWPSFAN-IHPFAPADQAQGYQEMFNNLGEWLCTITGFD-SFSLQPNAGAAGEYAGLMVIR 669 (985)
Q Consensus 592 ~~lG~~t~~~~~~~~~~~~~~~~f~~-~~p~~p~e~~~G~~~~~~e~~~~la~l~G~~-~~~~~~~sGa~a~~a~l~air 669 (985)
..||++++.+..+...+......... +++ . +...++.+.|+++++.+ ...++.+||++|++++++.+|
T Consensus 65 ~~lGh~~p~i~~Ai~~ql~~~~~~~~~~~~-~---------~~~~~lae~L~~~~p~~~~~v~f~~SGsEA~e~AlklAr 134 (457)
T PRK05639 65 ASTGYSHPKLVKAVQEQVALIQHSMIGYTH-S---------ERAIRVAEKLAEISPIENPKVLFGLSGSDAVDMAIKVSK 134 (457)
T ss_pred hccCCCCHHHHHHHHHHHHhccccccCccC-C---------HHHHHHHHHHHhhCCCCcCEEEEeCchHHHHHHHHHHHH
Confidence 45788877776655544322111111 111 1 12346788888887643 245778999999999999988
Q ss_pred HHHHhcCCCCCCEEEE-cCCCCcccHHHHHHCC--------c-----EEEEEcCCCCCC--------CCH--------HH
Q 001989 670 AYHKARGDHHRNVCII-PVSAHGTNPATAAMCG--------M-----KIVSVGTDAKGN--------INI--------EE 719 (985)
Q Consensus 670 ~~~~~~g~~~~~~IIv-~~~~Hg~~~~~a~~~G--------~-----~vv~v~~d~~g~--------iD~--------e~ 719 (985)
.| +++.+||. ...+||....+....| + .++.+|.+...+ .|. +.
T Consensus 135 ~~------tgr~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (457)
T PRK05639 135 FS------TRRPWILAFIGAYHGQTLGATSVAAFQSSQKRGFSPLMPNVVWIPYPNPYRNPWGINGYEEPDELINRFLDY 208 (457)
T ss_pred Hh------cCCCeEEEECCCcCCccHHHHHHcCCCcccccCCCCCCCCceEeCCCccccccccccccCCHHHHHHHHHHH
Confidence 76 24556775 6689998765543221 1 244555532111 122 23
Q ss_pred HHHHHHh---cCCCEEEEEEEcC-CCcccccc---CHHHHHHHHHHcCCEEEEEccccccccCCCCCCcc--------CC
Q 001989 720 LRKAAEA---NRDNLSTLMVTYP-STHGVYEE---GIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYI--------GA 784 (985)
Q Consensus 720 L~~~i~~---~~~~t~~Vvv~~p-n~~G~i~~---di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~--------g~ 784 (985)
+++.+.. ..+++++|+++-. ...|++.+ -+++|.++|+++|+++|+|+++. |+.+.|.+ .+
T Consensus 209 le~~l~~~~~~~~~iAAvI~EPiqg~gG~~~p~~~yl~~l~~lc~~~g~llI~DEv~t----G~GrtG~~~a~~~~gv~P 284 (457)
T PRK05639 209 LENYVFSHVVPPDEVAALFAEPIQGDAGIVVPPENFFKELKKLLDEHGILLVMDEVQT----GIGRTGKWFASEWFEVKP 284 (457)
T ss_pred HHHHHHHhhcCCCceEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhh----ccCcCchHHHHHhcCCCC
Confidence 5554422 2367889988643 34466542 38999999999999999999874 34445432 37
Q ss_pred cEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhc
Q 001989 785 DVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMG 864 (985)
Q Consensus 785 Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg 864 (985)
|++++ .|.++ +| -.+|.+++++++.+...+.. . +++.|+++.++++.+.|..+.
T Consensus 285 Div~~--gK~l~----gG-~pi~av~~~~~i~~~~~~~~------------------~-~T~~g~p~~~aaa~a~l~~l~ 338 (457)
T PRK05639 285 DLIIF--GKGVA----SG-MGLSGVIGRKELMDLTSGSA------------------L-LTPAANPVISAAAEATLEIIE 338 (457)
T ss_pred CEEEe--chhhc----CC-CcceeEEehHHHHhhcCCCc------------------c-cCCCcCHHHHHHHHHHHHHHH
Confidence 99885 37764 33 34677788887766322110 0 123456677777888888887
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhc---cCCee--ecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCCC
Q 001989 865 SKGLTEASKIAILNANYMAKRLEK---HYPIL--FRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSW 939 (985)
Q Consensus 865 ~eGl~~~~~~~~~~a~~l~~~L~~---g~~l~--~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~~ 939 (985)
.+++. ++..++.++|+++|++ .++++ +.+. + .+..+.+..+. ..........+.+.|.++|+++.....
T Consensus 339 ~~~l~---~~~~~~g~~l~~~L~~l~~~~~~~~~VrG~-G-l~~gve~~~~~-~~~~~~~~~~~~~~~~~~Gv~~~~~g~ 412 (457)
T PRK05639 339 EENLL---KNALKVGEFIKKRLLEMKESFEVIGDVRGK-G-LMIGVEIVKEN-GKPDPELTGKICWRAFELGLILPSYGM 412 (457)
T ss_pred HccHH---HHHHHHHHHHHHHHHHHHHhCCCEEeeccc-e-eEEEEEEecCC-CCCCHHHHHHHHHHHHhCCeEEeecCC
Confidence 66543 4556678888888875 23432 1121 1 22112111110 000001135678888999999854421
Q ss_pred CCCCEEEEeccCCCCHHHHHHHHccCChhHHHHhhcc
Q 001989 940 PVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRLKM 976 (985)
Q Consensus 940 p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~~~ 976 (985)
..+.||++|+..+|++|||+ ++++|++++..+..
T Consensus 413 -~~~~lr~~Ppl~it~~~id~--~~~~l~~~l~~~~~ 446 (457)
T PRK05639 413 -FGNVIRITPPLVITKEIAEK--GLEIMERAIKDALA 446 (457)
T ss_pred -CCCEEEEeCCCccCHHHHHH--HHHHHHHHHHHHHH
Confidence 14799999999999999999 88999999877643
|
|
| >PRK09028 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=2e-15 Score=173.05 Aligned_cols=212 Identities=19% Similarity=0.229 Sum_probs=156.9
Q ss_pred HHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc---hh
Q 001989 214 LNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL---KD 290 (985)
Q Consensus 214 ~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~---~~ 290 (985)
.++++.+|+|.|.+ ++.++.+|++++.++++++ +. +||+||+++..|+.+...+....+.+|+++.+++. ++
T Consensus 64 ~~Le~~iA~le~~~--~~~~~~sG~~Ai~~~l~al-l~--~GD~Vvv~~~~Y~~t~~l~~~~l~~~Gi~v~~v~~~~~e~ 138 (394)
T PRK09028 64 FAFQAAIVELEGGA--GTALYPSGAAAISNALLSF-LK--AGDHLLMVDSCYEPTRDLCDKILKGFGIETTYYDPMIGEG 138 (394)
T ss_pred HHHHHHHHHHhCCC--cEEEECCHHHHHHHHHHHH-hC--CCCEEEEECCCcHHHHHHHHHhhhhcceEEEEECCCCHHH
Confidence 35778999999875 4789999999888877765 33 89999999999988887665445668999998875 45
Q ss_pred hhc-cCCCEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCCCCCcccceEEEecC-ccccccCCCCC
Q 001989 291 IDY-KSGDVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKPPGELGADIVVGSA-QRFGVPMGYGG 367 (985)
Q Consensus 291 l~~-l~~~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~~~~~~GaDi~v~s~-k~lg~P~~~GG 367 (985)
+++ ++++|++|++++| |++|.+.|+++|+++||++|++++|| +.++.+....|.++||||++.|+ |++++| |.
T Consensus 139 l~~~l~~~TklV~lespsNPtg~v~dl~~I~~la~~~g~~lvvD-~t~a~p~~~~Pl~~GaDivv~S~tK~l~Gh---~d 214 (394)
T PRK09028 139 IRELIRPNTKVLFLESPGSITMEVQDVPTLSRIAHEHDIVVMLD-NTWASPINSRPFEMGVDISIQAATKYIVGH---SD 214 (394)
T ss_pred HHHhcCcCceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEE-CCccccccCCccccCceEEEEeCCeEecCC---CC
Confidence 766 8889999999998 78999999999999999999999994 46666777788999999999999 777643 22
Q ss_pred CcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcchHHHHH
Q 001989 368 PHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIA 447 (985)
Q Consensus 368 P~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i~ 447 (985)
--.|.++.++++.+++- . .++.-|. | .++. ..|+...|-+-|.-+.
T Consensus 215 ~~~G~~~~~~~~~~~l~--------~-----------------~~~~~G~---~-~~p~-----~a~l~~rgl~TL~lR~ 260 (394)
T PRK09028 215 VMLGTATANEKHWDQLR--------E-----------------HSYLMGQ---C-TSPD-----DVYLAMRGLRTLGVRL 260 (394)
T ss_pred EEEEEEECCHHHHHHHH--------H-----------------HHHhcCC---C-CCHH-----HHHHHHcccCcHHHHH
Confidence 22465555555443320 0 0011110 0 0111 1245666777788888
Q ss_pred HHHHHHHHHHHHHHhcCCCeE
Q 001989 448 QRVHGLAGTFALGLKKLGTVE 468 (985)
Q Consensus 448 ~~~~~~a~~l~~~L~~~g~~~ 468 (985)
++..++|..+++.|++.+.++
T Consensus 261 ~~~~~na~~la~~L~~~p~v~ 281 (394)
T PRK09028 261 AQHEKNALKVANWLATRPEVD 281 (394)
T ss_pred HHHHHHHHHHHHHHhcCCCcc
Confidence 999999999999999885343
|
|
| >PRK07324 transaminase; Validated | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.9e-15 Score=173.88 Aligned_cols=292 Identities=14% Similarity=0.137 Sum_probs=180.3
Q ss_pred HHHHHHHHHhC-CCccceec-CcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcCCCC-
Q 001989 636 NLGEWLCTITG-FDSFSLQP-NAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAK- 712 (985)
Q Consensus 636 e~~~~la~l~G-~~~~~~~~-~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~d~~- 712 (985)
++++.++++++ .+..++.. +++++|+..++.++ . .++|+|+++.+.|..+...++..|++++.+|++.+
T Consensus 66 ~lr~~ia~~~~~~~~~~vi~t~G~~~al~~~~~~l---~-----~~gd~Vl~~~P~y~~~~~~~~~~g~~v~~v~~~~~~ 137 (373)
T PRK07324 66 EFKEAVASLYQNVKPENILQTNGATGANFLVLYAL---V-----EPGDHVISVYPTYQQLYDIPESLGAEVDYWQLKEEN 137 (373)
T ss_pred HHHHHHHHHhcCCChhhEEEcCChHHHHHHHHHHh---C-----CCCCEEEEcCCCchhHHHHHHHcCCEEEEEeccccc
Confidence 56777888764 55545444 44455554333322 1 47889999988887777778899999999998653
Q ss_pred -CCCCHHHHHHHHHhcCCCEEEEEEEcCC-CccccccC---HHHHHHHHHHcCCEEEEEccccc-cccC-CCCCCc-cCC
Q 001989 713 -GNINIEELRKAAEANRDNLSTLMVTYPS-THGVYEEG---IDEICKIIHDNGGQVYMDGANMN-AQVG-LTSPGY-IGA 784 (985)
Q Consensus 713 -g~iD~e~L~~~i~~~~~~t~~Vvv~~pn-~~G~i~~d---i~eI~~la~~~galliVD~a~~~-~~~~-l~~pg~-~g~ 784 (985)
+.+|+++++++++ +++++|++++|+ ++|.+. + +++|+++|+++|+++++|+++.. ...+ ...... ..-
T Consensus 138 ~~~~d~~~l~~~~~---~~~kli~i~~p~NPtG~~~-~~~~l~~i~~~a~~~~~~ii~De~y~~l~~~~~~~s~~~~~~~ 213 (373)
T PRK07324 138 GWLPDLDELRRLVR---PNTKLICINNANNPTGALM-DRAYLEEIVEIARSVDAYVLSDEVYRPLDEDGSTPSIADLYEK 213 (373)
T ss_pred CCCCCHHHHHHhCC---CCCcEEEEeCCCCCCCCCC-CHHHHHHHHHHHHHCCCEEEEEccccccccCCCCCChhhccCC
Confidence 4689999999887 789999999994 799886 5 89999999999999999998631 1111 101111 112
Q ss_pred cEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhc
Q 001989 785 DVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMG 864 (985)
Q Consensus 785 Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg 864 (985)
.|.+.|++|+|++| |.++|++++++++.+.+... + ....++.+...+ .++...+.. .
T Consensus 214 ~I~~~s~SK~~~~~----G~RiG~i~~~~~li~~~~~~------------~--~~~~~~~~~~~q----~~a~~~l~~-~ 270 (373)
T PRK07324 214 GISTNSMSKTYSLP----GIRVGWIAANEEVIDILRKY------------R--DYTMICAGVFDD----MLASLALEH-R 270 (373)
T ss_pred EEEEecchhhcCCc----cceeEEEecCHHHHHHHHHH------------h--CcEEecCChHHH----HHHHHHHcC-H
Confidence 46777889988654 78899999887665443211 0 001112111111 112222221 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHH-HCCCccCC-CCCCCC
Q 001989 865 SKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLM-DYGFHGPT-MSWPVP 942 (985)
Q Consensus 865 ~eGl~~~~~~~~~~a~~l~~~L~~g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~-~~Gi~~~~-~~~p~~ 942 (985)
.+-+++..+...++.+.+.+.|++...+....+.+..+ +.+.++ .+.+..+++++|. ++|+.+.. ..|..+
T Consensus 271 ~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~p~gg~~--~~i~~~-----~~~~~~~~~~~ll~~~gv~v~pg~~F~~~ 343 (373)
T PRK07324 271 DAILERNRKIVRTNLAILDEWVAKEPRVSYVKPKAVST--SFVKLD-----VDMPSEDFCLKLLKETGVLLVPGNRFDLE 343 (373)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCceEECCCceEE--EEEEeC-----CCCCHHHHHHHHHHhcCEEEECccccCCC
Confidence 12233333445566677777776521221112222222 234443 1356788999875 67988643 334556
Q ss_pred CEEEEeccCCCCHHHHHHHHccCChhHHHHh
Q 001989 943 GTLMIEPTESESKSWTGIVMLSSPSEKKLHR 973 (985)
Q Consensus 943 ~~lris~t~~~t~eeId~~~~~~~l~~~~~~ 973 (985)
+++||++.. +++.+++ .++.|++.+++
T Consensus 344 ~~iRis~~~--~~~~l~~--~l~rl~~~l~~ 370 (373)
T PRK07324 344 GHVRIGYCC--DTETLKK--GLKKLSEFLRE 370 (373)
T ss_pred CeEEEEecC--CHHHHHH--HHHHHHHHHHh
Confidence 899999864 5788888 66777776654
|
|
| >PLN02590 probable tyrosine decarboxylase | Back alignment and domain information |
|---|
Probab=99.71 E-value=5.9e-15 Score=174.26 Aligned_cols=360 Identities=12% Similarity=0.072 Sum_probs=215.6
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhcCCCc-c--ceecCCCCCCCCCcHHHHHHHHhCCccccccCCChhhHhhhHHHHHHH
Q 001989 139 MKFSKFDEGLTESQMIEHMQKLASMNKV-Y--KSFIGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLN 215 (985)
Q Consensus 139 ~~lp~~~~~~se~e~~~~~~~l~~~n~~-~--~~~lG~g~y~~~~p~~v~~~i~~~~~~~t~~~pyq~e~sqg~l~~i~e 215 (985)
..+| ..+.+-.++++++.+.-..... + ..|.|-=.-+...++.+.+-+.+ .| .-..+.-+.+.+..++..+
T Consensus 101 ~~~P--~~g~~~~~il~~~~~~i~p~~~~~~hP~f~a~~~~~~~~~~~lgd~l~s--a~--n~~~~~~~~sPa~t~lE~~ 174 (539)
T PLN02590 101 DSAP--ERPESLKELLDDVSKKIMPGITHWQSPSYFAYYASSTSVAGFLGEMLNA--GL--SVVGFTWLTSPAATELEII 174 (539)
T ss_pred CCCC--CCCCCHHHHHHHHHHHHhccCCcCCCCCeeEeccCCCcHHHHHHHHHHH--hc--ccccCCcccCchhHHHHHH
Confidence 3456 4567888999999876544321 1 12222211011133444432222 11 1122333456666777778
Q ss_pred HHHHHHHhcCCCC-------cceeeccchHHHHHHHH-HHhhhh-c--C----CCCEEEEcCCCChhHHHHHHHhhcCCC
Q 001989 216 FQTMIADLTGLPM-------SNASLLDEGTAAAEAMA-MCNNIQ-K--G----KKKTFIIASNCHPQTIDICITRADGFD 280 (985)
Q Consensus 216 ~q~~ia~L~g~~~-------~~~sl~~~~ta~~ea~~-~a~~~~-~--~----~g~~Vlv~~~~H~s~~~~~~~~a~~~g 280 (985)
.-.++++|+|++. ....+++|||.+.-.++ .|+... + + ++-.|++++..|.|+.+.++.+ +.|
T Consensus 175 vi~wl~~l~glp~~~~~~~~~gG~~~sGgSeAnl~al~aAR~~~~~~~g~~~~~~~vvy~S~~aH~Sv~KAa~il--Glg 252 (539)
T PLN02590 175 VLDWLAKLLQLPDHFLSTGNGGGVIQGTGCEAVLVVVLAARDRILKKVGKTLLPQLVVYGSDQTHSSFRKACLIG--GIH 252 (539)
T ss_pred HHHHHHHHhCCCcccccCCCCceEEcCchHHHHHHHHHHHHHHHHhhhcccCCCCEEEEecCCchHHHHHHHHHc--CCC
Confidence 8899999999986 34667888885443333 333211 0 0 2225678999999999987643 233
Q ss_pred e-EEEEeCc----------hhhhc-cCC------CEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCC
Q 001989 281 I-KVVVSDL----------KDIDY-KSG------DVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTIL 341 (985)
Q Consensus 281 i-~v~~v~~----------~~l~~-l~~------~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l 341 (985)
- .++.|+. ++|++ |.. ...+|+.+.. +.+|.++||++|+++|+++|++++||+-.-+..++
T Consensus 253 ~~~vr~Vp~d~~~~~~md~~~L~~~I~~d~~~g~~P~~VvaTaGTT~tGaiDpl~~Ia~i~~~~g~WlHVDaA~GG~al~ 332 (539)
T PLN02590 253 EENIRLLKTDSSTNYGMPPESLEEAISHDLAKGFIPFFICATVGTTSSAAVDPLVPLGNIAKKYGIWLHVDAAYAGNACI 332 (539)
T ss_pred cccEEEEeCCCCCCCcCCHHHHHHHHHHHHhcCCCcEEEEEEeCCCCCcccCCHHHHHHHHHHhCCeEEEecchhhhhhc
Confidence 1 2444433 34544 432 2456777776 56999999999999999999999996422111112
Q ss_pred CCC------CcccceEEEecC-ccccccCCCCCCcEEEEEEchh--hHhcC--CCceeeeeecCCC-Cc---ceeeeccc
Q 001989 342 KPP------GELGADIVVGSA-QRFGVPMGYGGPHAAFLATSQE--YKRMM--PGRIVGVSIDSSG-KP---ALRVAMQT 406 (985)
Q Consensus 342 ~~~------~~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~--~~~~l--p~~~vG~t~d~~g-~~---~~~l~l~t 406 (985)
.+. +--.||-+..+. |+++.|+. +|++.++++ +.+.+ .+.++....+..+ .. .+.+.+
T Consensus 333 ~~~~r~~~~Gie~ADSit~D~HK~l~~p~~-----cg~llvr~~~~l~~a~~~~~~YL~~~~~~~~~~~d~~d~~i~l-- 405 (539)
T PLN02590 333 CPEYRKFIDGIENADSFNMNAHKWLFANQT-----CSPLWVKDRYSLIDALKTNPEYLEFKVSKKDTVVNYKDWQISL-- 405 (539)
T ss_pred ChhhHHHhcCCccCCEEEECchhhcCcCcC-----EEEEEecCHHHHHHHhhcCHHHhCCcccccccCCCccccCCCC--
Confidence 111 223479999999 77777864 678888863 22222 1111111000000 00 011111
Q ss_pred ccccccccccCCCccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCCCcceEEEecCC--
Q 001989 407 REQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDTVKVKCAD-- 484 (985)
Q Consensus 407 re~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~-- 484 (985)
-||.. ++...+-+..+|.+|++++.+++.++|+|+.+.|++..+|+++.++.++.|+|+...
T Consensus 406 ----sRr~r------------aLklW~~lr~~G~~G~~~~i~~~~~lA~~~~~~l~~~~~fel~~~~~l~iVcFr~~~~~ 469 (539)
T PLN02590 406 ----SRRFR------------SLKLWMVLRLYGSENLRNFIRDHVNLAKHFEDYVAQDPSFEVVTTRYFSLVCFRLAPVD 469 (539)
T ss_pred ----CCchH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCceEEEEEEecCCC
Confidence 13321 122122258899999999999999999999999999866999987878888887531
Q ss_pred ---------HHHHHHHHHHcCc-eeeee-c--CCeEEEEec-cCCCHHHHHHHHHHHhC
Q 001989 485 ---------AHAIASAAYKIEM-NLRVV-D--SNTVTASFD-ETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 485 ---------~~~v~~~L~~~GI-~~~~~-~--~~~lris~t-~~~t~edId~li~aL~~ 529 (985)
..++.++|.+.|. ++... . .-.+|+|+. +.+|++|||.+++.|.+
T Consensus 470 ~~~~~~~~ln~~l~~~l~~~G~~~vs~t~~~g~~~lR~~i~n~~T~~~dv~~~~~~i~~ 528 (539)
T PLN02590 470 GDEDQCNERNRELLAAVNSTGKIFISHTALSGKFVLRFAVGAPLTEEKHVTEAWQIIQK 528 (539)
T ss_pred CCHHHHHHHHHHHHHHHHhCCCEEEEeeEECCEEEEEEEecCCCCCHHHHHHHHHHHHH
Confidence 3456666666665 34332 2 246899985 46789999999998875
|
|
| >PRK08593 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.8e-15 Score=175.65 Aligned_cols=331 Identities=17% Similarity=0.220 Sum_probs=201.1
Q ss_pred ccccccccCCCccccccccccccccc-cCCCCchhhhhhHHHHHHHHHHHHHHHhCCC--ccceecCcHHHHHHHHHHHH
Q 001989 592 IPLGSCTMKLNATTEMMPVTWPSFAN-IHPFAPADQAQGYQEMFNNLGEWLCTITGFD--SFSLQPNAGAAGEYAGLMVI 668 (985)
Q Consensus 592 ~~lG~~t~~~~~~~~~~~~~~~~f~~-~~p~~p~e~~~G~~~~~~e~~~~la~l~G~~--~~~~~~~sGa~a~~a~l~ai 668 (985)
..||++++.+..+...+......+.. +++ . +...++.+.|++++... ...++.+||++|++++++.+
T Consensus 54 ~~lGH~~p~v~~Ai~~ql~~~~~~~~~~~~-~---------~~~~~lae~L~~~~p~~~~~~v~f~~SGseA~e~AiklA 123 (445)
T PRK08593 54 QNVGHAPPRVVEAIKAQADKFIHYTPAYMY-H---------EPLVRLAKKLCELAPGDFEKRVTFGLSGSDANDGIIKFA 123 (445)
T ss_pred hcCCCCCHHHHHHHHHHHHhccCccccccC-C---------HHHHHHHHHHHHhCCCCCCCEEEECCchHHHHHHHHHHH
Confidence 45888888777665554422222211 111 1 22447888899987533 24567799999999999988
Q ss_pred HHHHHhcCCCCCCEEEE-cCCCCcccHHHHHHCCc-------------EEEEEcCCCC-----CCCC-------HHHHHH
Q 001989 669 RAYHKARGDHHRNVCII-PVSAHGTNPATAAMCGM-------------KIVSVGTDAK-----GNIN-------IEELRK 722 (985)
Q Consensus 669 r~~~~~~g~~~~~~IIv-~~~~Hg~~~~~a~~~G~-------------~vv~v~~d~~-----g~iD-------~e~L~~ 722 (985)
|.|. ++.+||. ...+||....+....+. .+..+|.... +..+ ++++++
T Consensus 124 r~~t------gr~~ii~~~~~YHG~t~~als~s~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 197 (445)
T PRK08593 124 RAYT------GRPYIISFTNAYHGSTYGSLSMSGISLNMRRKYGPLLPGFVHIPFPDKYRGMYEEPDANFVEEYLAPLKE 197 (445)
T ss_pred HHhh------CCCeEEEECCCcCCCcHHHHhhcCCCcccccCCCCCCCCcEEeCCCccccccccCCcHHHHHHHHHHHHH
Confidence 8762 3456665 66899987655432221 2344554221 1112 244555
Q ss_pred HHHhc--CCCEEEEEEEcC-CCccccccC----HHHHHHHHHHcCCEEEEEccccccccCCCCCCcc--------CCcEE
Q 001989 723 AAEAN--RDNLSTLMVTYP-STHGVYEEG----IDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYI--------GADVC 787 (985)
Q Consensus 723 ~i~~~--~~~t~~Vvv~~p-n~~G~i~~d----i~eI~~la~~~galliVD~a~~~~~~~l~~pg~~--------g~Di~ 787 (985)
.++++ .+++++|+++.. +..|++. + +++|.++|+++|+++|+|+++. ++.+.|.+ .+|++
T Consensus 198 ~~~~~~~~~~iAavI~EPv~g~gG~~~-~~~~yl~~l~~lc~~~g~llI~DEv~t----g~GrtG~~~a~~~~gv~pDi~ 272 (445)
T PRK08593 198 MFEKYLPADEVACIVIETIQGDGGLLE-PVPGYFEALYKFCREHGILFAVDDIQQ----GLGRTGKWSSISHFNITPDLM 272 (445)
T ss_pred HHHhhcCCCceEEEEEccccCCCCCcC-CCHHHHHHHHHHHHHcCCEEEEechhh----CCCcCchHHHHHhcCCCCCEe
Confidence 55432 357888888764 3457664 4 9999999999999999999873 23333322 26887
Q ss_pred EeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHH
Q 001989 788 HLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKG 867 (985)
Q Consensus 788 ~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eG 867 (985)
++ .|.++ + |-.+|.+++++++.+.+.... .+ .++.|+++.++++.+.|..+..++
T Consensus 273 t~--gK~l~----~-G~p~gav~~~~~i~~~~~~~~-----------------~~-~T~~~~pl~~aaa~a~l~~l~~~~ 327 (445)
T PRK08593 273 SF--GKSLA----G-GMPMSAIVGRKEIMESLEAPA-----------------HL-FTTGANPVSCAAALATIDMIEDES 327 (445)
T ss_pred ee--ccccc----C-CcccEEEEEcHHHHhhhccCC-----------------CC-CCCCCCHHHHHHHHHHHHHHHhcc
Confidence 65 37663 3 333677778887766553110 00 123346666777778888876654
Q ss_pred HHHHHHHHHHHHHHHHHHhhcc---CCeee--cCCCCceeeEEEEEecC-ccccCCCCHHHHHHHHHHCCCccCCCCCCC
Q 001989 868 LTEASKIAILNANYMAKRLEKH---YPILF--RGVNGTVAHEFIVDLRG-LKNTAGIEPEDVAKRLMDYGFHGPTMSWPV 941 (985)
Q Consensus 868 l~~~~~~~~~~a~~l~~~L~~g---~~l~~--~~~~~~~~~~~iv~~~~-~~~~~g~~~~~v~~~L~~~Gi~~~~~~~p~ 941 (985)
+ .++..++.++|+++|++. ++++. .+. + .+..+-+.... ...........+.+.|.++|+++....
T Consensus 328 l---~~~~~~~g~~l~~~L~~l~~~~~~v~~vrG~-G-l~~gi~l~~~~~~~~~~~~~~~~~~~~~~~~Gv~~~~~~--- 399 (445)
T PRK08593 328 L---LQRSAEKGEYARKRFDQWVSKYNFVGDVRGY-G-LSIGIDIVSDKKLKTRDNEAALKICNYCFEHGVVIIAVA--- 399 (445)
T ss_pred H---HHHHHHHHHHHHHHHHHHHhcCCcEEEEecc-c-eEEEEEEecCCCcCCCcHHHHHHHHHHHHHCCeEEeccC---
Confidence 3 446667778888888652 23211 111 1 12111111100 000000123568888999999875432
Q ss_pred CCEEEEeccCCCCHHHHHHHHccCChhHHHHhhccCC
Q 001989 942 PGTLMIEPTESESKSWTGIVMLSSPSEKKLHRLKMGR 978 (985)
Q Consensus 942 ~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~~~~~ 978 (985)
.+.+|++|+..+|++|||+ +++++++++..+.++.
T Consensus 400 ~~~lr~~p~l~~t~~~id~--~~~~l~~~l~~~~~~~ 434 (445)
T PRK08593 400 GNVLRFQPPLVITYEQLDT--ALNTIEQAFTALEAGK 434 (445)
T ss_pred CCEEEEECCCccCHHHHHH--HHHHHHHHHHHHhccc
Confidence 3689999999999999999 8899999998877643
|
|
| >PRK08360 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.7e-15 Score=175.53 Aligned_cols=334 Identities=17% Similarity=0.139 Sum_probs=204.5
Q ss_pred cccccccccCCCccccccccccccccccCCCCchhhhhhHHHHHHHHHHHHHHHhCCC-ccceecCcHHHHHHHHHHHHH
Q 001989 591 MIPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFD-SFSLQPNAGAAGEYAGLMVIR 669 (985)
Q Consensus 591 ~~~lG~~t~~~~~~~~~~~~~~~~f~~~~p~~p~e~~~G~~~~~~e~~~~la~l~G~~-~~~~~~~sGa~a~~a~l~air 669 (985)
...||++++.+..+...+......+...+-.. +...++.+.|+++++.. ...++.+||++|++++++.+|
T Consensus 52 ~~~lGh~~p~v~~Ai~~ql~~~~~~~~~~~~~---------~~~~~la~~L~~~~p~~~~~v~f~~sGsEAve~AlklAr 122 (443)
T PRK08360 52 VQNVGHNNPRVVKAIKEQTDKLIHYTPIYGFP---------VEPLLLAEKLIEIAPGDNPKVSFGLSGSDANDGAIKFAR 122 (443)
T ss_pred hcccCCCCHHHHHHHHHHHHhccCccccccCc---------HHHHHHHHHHHHhCCCCCCEEEEcCCHHHHHHHHHHHHH
Confidence 34689888877766555542222221110001 22347788888888643 245778999999999999998
Q ss_pred HHHHhcCCCCCCEEEE-cCCCCcccHHHHHHCCc------------EEEEEcCCCCCC------------CCHHHHHHHH
Q 001989 670 AYHKARGDHHRNVCII-PVSAHGTNPATAAMCGM------------KIVSVGTDAKGN------------INIEELRKAA 724 (985)
Q Consensus 670 ~~~~~~g~~~~~~IIv-~~~~Hg~~~~~a~~~G~------------~vv~v~~d~~g~------------iD~e~L~~~i 724 (985)
.| +++.+|+. ...+||.........|. .+..+|.+.... .+++.+++.+
T Consensus 123 ~~------tgr~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 196 (443)
T PRK08360 123 AY------TKRRKILSYLRSYYGSTYGAMSLTGLDFPVRALVGELSDVHYIPYPDCYRCPFGKEPGSCKMECVEYIKEKF 196 (443)
T ss_pred Hh------cCCCeEEEEeCCcCCcCHHHHHhcCCCcccccCCCCCCCcEEEeCCccccccccCchhhhHHHHHHHHHHHH
Confidence 76 24556765 56899987554432221 234444321100 2355677777
Q ss_pred Hh--cCCCEEEEEEEcC-CCcccccc---CHHHHHHHHHHcCCEEEEEccccccccCCCCCC--------ccCCcEEEeC
Q 001989 725 EA--NRDNLSTLMVTYP-STHGVYEE---GIDEICKIIHDNGGQVYMDGANMNAQVGLTSPG--------YIGADVCHLN 790 (985)
Q Consensus 725 ~~--~~~~t~~Vvv~~p-n~~G~i~~---di~eI~~la~~~galliVD~a~~~~~~~l~~pg--------~~g~Di~~~s 790 (985)
++ +.+++++|+++-- +..|++.+ -+++|.++|+++|+++++|+++. ++ .+.+ ....|++++
T Consensus 197 ~~~~~~~~iAAvi~eP~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~-g~---gr~G~~~a~~~~~~~pDiitl- 271 (443)
T PRK08360 197 EGEVYAEGVAALFAEPIQGDAGMIVPPEDYFKKLKKILDEHGILLVVDEVQS-GL---GRTGKWFAIEHFGVEPDIITL- 271 (443)
T ss_pred HhccCCCCeEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecccc-CC---CcCccchhhhhcCCCCCEEEe-
Confidence 53 2367899988732 46787652 28999999999999999999874 22 2222 123688765
Q ss_pred CcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHHHHH
Q 001989 791 LHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTE 870 (985)
Q Consensus 791 ~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl~~ 870 (985)
.|.++ +|..+|++++++++.+.+..... . +++.+++..++++.+.|..+..+++
T Consensus 272 -sK~l~-----~G~pigav~~~~~i~~~~~~~~~--------------~----~T~~~~p~~~aaa~a~l~~l~~~~l-- 325 (443)
T PRK08360 272 -GKPLG-----GGLPISATIGRAEIMDSLPPLAH--------------A----FTLSGNPVASAAALAVIEEIEEKNL-- 325 (443)
T ss_pred -ccccc-----CCceeEEEEEcHHHHhhhcCCCC--------------C----CCCCcCHHHHHHHHHHHHHHHHcCH--
Confidence 47774 34557888888777665532100 0 1123355566677788887766544
Q ss_pred HHHHHHHHHHHHHHHhhcc---CCeeecCCCCceeeEEEEEecCcc--ccCC-CCHHHHHHHHHHCCCccCCCCCCCCCE
Q 001989 871 ASKIAILNANYMAKRLEKH---YPILFRGVNGTVAHEFIVDLRGLK--NTAG-IEPEDVAKRLMDYGFHGPTMSWPVPGT 944 (985)
Q Consensus 871 ~~~~~~~~a~~l~~~L~~g---~~l~~~~~~~~~~~~~iv~~~~~~--~~~g-~~~~~v~~~L~~~Gi~~~~~~~p~~~~ 944 (985)
.++..++.++++++|++. ++++........+ +-+.+..-. +..+ .....+.++|.++|+++.... .+.
T Consensus 326 -~~~~~~~g~~l~~~L~~l~~~~~~v~~vrg~Gl~--~gie~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~---~~~ 399 (443)
T PRK08360 326 -LKRAEKLGNYTKKRLEEMKKKHELIGDVRGIGLM--IGVDLVKDRETKERAYEEAAKVVWRAWELGLIVTFFS---GNV 399 (443)
T ss_pred -HHHHHHHHHHHHHHHHHHHHhCCCeeeeeccceE--EEEEEecCCcccCccHHHHHHHHHHHHHCCeEEeecC---CCE
Confidence 446667778888888652 3322111101122 222221000 0000 123568888999999875432 378
Q ss_pred EEEeccCCCCHHHHHHHHccCChhHHHHhhccCC
Q 001989 945 LMIEPTESESKSWTGIVMLSSPSEKKLHRLKMGR 978 (985)
Q Consensus 945 lris~t~~~t~eeId~~~~~~~l~~~~~~~~~~~ 978 (985)
+|++|+..+|++|||+ +++++++++..++.+.
T Consensus 400 lr~~P~l~~t~~~id~--~~~~l~~~l~~~~~~~ 431 (443)
T PRK08360 400 LRIQPPLTIEKEVLDE--GLDILEEAIEDVEEGK 431 (443)
T ss_pred EEEeCCCCCCHHHHHH--HHHHHHHHHHHHHhcc
Confidence 9999999999999999 8899999998887653
|
|
| >PRK09105 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.4e-15 Score=174.81 Aligned_cols=280 Identities=14% Similarity=0.123 Sum_probs=183.2
Q ss_pred HHHHHHHHHHHhCCCccceecCcHH-HHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcCCCC
Q 001989 634 FNNLGEWLCTITGFDSFSLQPNAGA-AGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAK 712 (985)
Q Consensus 634 ~~e~~~~la~l~G~~~~~~~~~sGa-~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~d~~ 712 (985)
..++++.+++.+|.+..++..+.|+ ++. .++++.+. +++++|+++++.|+.+...++..|++++.+|.+++
T Consensus 80 ~~~Lr~aia~~~~v~~e~I~it~Gs~~ai---~~~~~~l~-----~~gd~Vli~~P~y~~~~~~~~~~g~~~~~v~~~~~ 151 (370)
T PRK09105 80 EDDLRTLFAAQEGLPADHVMAYAGSSEPL---NYAVLAFT-----SPTAGLVTADPTYEAGWRAADAQGAPVAKVPLRAD 151 (370)
T ss_pred HHHHHHHHHHHhCcChhhEEEcCChHHHH---HHHHHHHc-----CCCCEEEEeCCChHHHHHHHHHcCCeEEEecCCCC
Confidence 3467888999999887666555554 444 33333332 36789999999888787788899999999999877
Q ss_pred CCCCHHHHHHHHHhcCCCEEEEEEEcCC-CccccccCHHHHHHHHHH--cCCEEEEEccccccccCCCCCC---ccCCcE
Q 001989 713 GNINIEELRKAAEANRDNLSTLMVTYPS-THGVYEEGIDEICKIIHD--NGGQVYMDGANMNAQVGLTSPG---YIGADV 786 (985)
Q Consensus 713 g~iD~e~L~~~i~~~~~~t~~Vvv~~pn-~~G~i~~di~eI~~la~~--~galliVD~a~~~~~~~l~~pg---~~g~Di 786 (985)
+.+|++++++. . +++++|++++|| ++|.+. +.++|.++++. +|+++++|+++.. +....... ....++
T Consensus 152 ~~~d~~~l~~~-~---~~~~~v~l~nP~NPTG~~~-~~~~l~~l~~~~~~~~~lIvDEaY~~-f~~~~s~~~~~~~~~~v 225 (370)
T PRK09105 152 GAHDVKAMLAA-D---PNAGLIYICNPNNPTGTVT-PRADIEWLLANKPAGSVLLVDEAYIH-FSDAPSVVDLVAQRKDL 225 (370)
T ss_pred CCCCHHHHHhc-C---CCCCEEEEeCCCCCCCcCc-CHHHHHHHHHhCCCCcEEEEECchHH-hccCcchHHHHhhCCCE
Confidence 88999999876 3 578899999994 799997 77888877754 4899999998731 21111111 123454
Q ss_pred -EEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcH
Q 001989 787 -CHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGS 865 (985)
Q Consensus 787 -~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~ 865 (985)
++.|++|+|++| |.++|++++++++.+.+... + ..+.+ . ....++.+++. ..
T Consensus 226 i~~~SfSK~~g~~----GlRiG~~v~~~~~i~~l~~~--~-------------~~~~~-----~-~~~~aa~~~L~--~~ 278 (370)
T PRK09105 226 IVLRTFSKLYGMA----GMRLGLAAARPDLLAKLARF--G-------------HNPLP-----V-PAAAAGLASLR--DP 278 (370)
T ss_pred EEEecccHhhcCC----ccceeeeecCHHHHHHHHhc--C-------------CCCcC-----H-HHHHHHHHHHh--CH
Confidence 456778888554 67899999887665443211 0 01111 1 11122223332 12
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCCCCCCCE
Q 001989 866 KGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGT 944 (985)
Q Consensus 866 eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~~p~~~~ 944 (985)
+-+++..++..++.+++.+.|++ ++.+. .+.+.+ +.++++ .+..++.+.|.++||.++......+++
T Consensus 279 ~~~~~~~~~~~~~r~~l~~~L~~~g~~~~--~~~~~f---~~~~~~-------~~~~~l~~~L~~~gI~v~~~~~~~~~~ 346 (370)
T PRK09105 279 KLVPQRRAENAAVREDTIAWLKKKGYKCT--PSQANC---FMVDVK-------RPAKAVADAMAKQGVFIGRSWPIWPNW 346 (370)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCcC--CCCCcE---EEEeCC-------CCHHHHHHHHHHCCcEEecCCCCCCCe
Confidence 33444455667778888888886 44432 222322 234432 357889999999999884321123589
Q ss_pred EEEeccCCCCHHHHHHHHccCChhHHH
Q 001989 945 LMIEPTESESKSWTGIVMLSSPSEKKL 971 (985)
Q Consensus 945 lris~t~~~t~eeId~~~~~~~l~~~~ 971 (985)
+||++. +.+++++ +++.|++++
T Consensus 347 ~Ris~~---~~~~~~~--l~~al~~~~ 368 (370)
T PRK09105 347 VRVTVG---SEEEMAA--FRSAFAKVM 368 (370)
T ss_pred EEEEcC---CHHHHHH--HHHHHHHHh
Confidence 999984 7899999 777777654
|
|
| >PRK11658 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.8e-15 Score=174.30 Aligned_cols=309 Identities=16% Similarity=0.084 Sum_probs=191.1
Q ss_pred HHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcCCCC-
Q 001989 634 FNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAK- 712 (985)
Q Consensus 634 ~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~d~~- 712 (985)
..++++.+++++|.+.+ +.+++|++|+..++.++ +..+||+||+++..|..+...+...|++++.++++++
T Consensus 35 ~~~le~~la~~~g~~~~-v~~~sgt~al~lal~al-------~~~~Gd~Viv~~~~~~~~~~~~~~~G~~~v~vd~~~~~ 106 (379)
T PRK11658 35 NQALEQAFCQLTGNQHA-IAVSSATAGMHITLMAL-------GIGPGDEVITPSLTWVSTLNMIVLLGATPVMVDVDRDT 106 (379)
T ss_pred HHHHHHHHHHHhCCCeE-EEECCHHHHHHHHHHHc-------CCCCCCEEEECCCcHHHHHHHHHHcCCEEEEEecCCCc
Confidence 35788999999998754 55677877765444432 1247899999998777776677889999999999765
Q ss_pred CCCCHHHHHHHHHhcCCCEEEEEEEcCCCccccccCHHHHHHHHHHcCCEEEEEccccccccCCC-CCCccCCcEEEeCC
Q 001989 713 GNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLT-SPGYIGADVCHLNL 791 (985)
Q Consensus 713 g~iD~e~L~~~i~~~~~~t~~Vvv~~pn~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~-~pg~~g~Di~~~s~ 791 (985)
+.+|+++++++++ ++|++|+.+++ +|... |+++|.++|+++|+++++|++|..+..... ..+.+|.|+.+++.
T Consensus 107 ~~~d~~~l~~~i~---~~tkav~~~~~--~G~~~-d~~~i~~~a~~~gi~vi~D~a~a~g~~~~~~~~g~~g~~~~Sf~~ 180 (379)
T PRK11658 107 LMVTPEAIEAAIT---PRTKAIIPVHY--AGAPA-DLDAIRAIGERYGIPVIEDAAHAVGTYYKGRHIGARGTAIFSFHA 180 (379)
T ss_pred CCcCHHHHHHhcc---cCCeEEEEeCC--CCCcC-CHHHHHHHHHHcCCeEEEECCCccCCeECCeecCCCCCEEEeCCC
Confidence 5799999999997 78999887664 68887 899999999999999999999964432111 34667777777777
Q ss_pred cccccccCCCCCCceEEEEEc-ccccCcCCC-CccccCCCCC---CCCCCCCCC--CCCCcchhhhHHHHHHHHHHHHhc
Q 001989 792 HKTFCIPHGGGGPGMGPIGVK-KHLAPFLPS-HPVVSTGGIP---APEKSQPLG--TIAAAPWGSALILPISYTYIAMMG 864 (985)
Q Consensus 792 hK~l~~p~g~GGPg~G~i~~~-~~l~~~lp~-~~~g~~~~~~---~~~~~~~~~--~i~s~~~g~~~~~~~a~a~l~~lg 864 (985)
+|.+. + +.+|+++.+ +++...+.. +..|...+.. ......... ....++ ....+.+| +....
T Consensus 181 ~K~l~-----~-g~GG~v~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~G~n~--~~~~l~AA---l~~~q 249 (379)
T PRK11658 181 IKNIT-----C-AEGGLVVTDDDELADRLRSLKFHGLGVDAFDRQTQGRAPQAEVLTPGYKY--NLADINAA---IALVQ 249 (379)
T ss_pred CCcCc-----c-cCceEEEECCHHHHHHHHHHHHcCCCcchhhhhcccCCCcceeecccccc--CcCHHHHH---HHHHH
Confidence 78763 2 345666664 444332211 0111111000 000000000 000000 00111222 22233
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcc-CCeeecCCC--CceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCC---
Q 001989 865 SKGLTEASKIAILNANYMAKRLEKH-YPILFRGVN--GTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMS--- 938 (985)
Q Consensus 865 ~eGl~~~~~~~~~~a~~l~~~L~~g-~~l~~~~~~--~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~--- 938 (985)
.+++.+..++..++++++.+.|++. +..+..... ....+.+.+.++. ...+.+.+++.+.|.++||.+....
T Consensus 250 l~~l~~~~~~r~~~a~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~r~~~~~~L~~~gI~~~~~~~~~ 327 (379)
T PRK11658 250 LAKLEALNARRREIAARYLQALADLPFQPLSLPAWPHQHAWHLFIIRVDE--ERCGISRDALMEALKERGIGTGLHFRAA 327 (379)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCccCcCCCCCCceeEEEEEEEECC--ccccCCHHHHHHHHHHCCCCCcccCcCc
Confidence 4567777778888888898999762 211111111 1122344555431 0014567899999999998754211
Q ss_pred --------------CC-----CCCEEEEeccCCCCHHHHHHHHccCChhHHH
Q 001989 939 --------------WP-----VPGTLMIEPTESESKSWTGIVMLSSPSEKKL 971 (985)
Q Consensus 939 --------------~p-----~~~~lris~t~~~t~eeId~~~~~~~l~~~~ 971 (985)
+| ....+.+-++...|.||+++ .++++++++
T Consensus 328 ~~~~~~~~~~~~~~~p~~~~~~~~~l~lP~~~~l~~~~~~~--i~~~i~~~~ 377 (379)
T PRK11658 328 HTQKYYRERFPTLSLPNTEWNSERICSLPLFPDMTDADVDR--VITALQQIA 377 (379)
T ss_pred ccChhhhccCCCCCChHHHHHHhCeEEccCCCCCCHHHHHH--HHHHHHHHH
Confidence 12 12456666667799999999 778887765
|
|
| >PRK05387 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.1e-15 Score=174.68 Aligned_cols=282 Identities=15% Similarity=0.156 Sum_probs=185.4
Q ss_pred HHHHHHHHHHhCCCccceecCcHHH-HHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcCCCCC
Q 001989 635 NNLGEWLCTITGFDSFSLQPNAGAA-GEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKG 713 (985)
Q Consensus 635 ~e~~~~la~l~G~~~~~~~~~sGa~-a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~d~~g 713 (985)
.++++.++++++.+...+..++|++ +. .++++.+. .++|+|+++++.|+.+...++..|++++.+|.++++
T Consensus 63 ~~lr~aia~~~~~~~~~I~it~G~~~al---~~~~~~l~-----~~gd~vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~ 134 (353)
T PRK05387 63 DALRQAIAAYYGLDPEQVFVGNGSDEVL---AHAFLAFF-----NHDRPLLFPDITYSFYPVYAGLYGIPYEEIPLDDDF 134 (353)
T ss_pred HHHHHHHHHHhCCCHHHEEEcCCHHHHH---HHHHHHhc-----CCCCEEEEeCCCHHHHHHHHHHcCCEEEEeecCCCC
Confidence 3788899999998876666655554 43 33334332 478999999987766677788899999999998788
Q ss_pred CCCHHHHHHHHHhcCCCEEEEEEEcCC-CccccccCHHHHHHHHHHc-CCEEEEEccccccccCCCC---CCccCCcEEE
Q 001989 714 NINIEELRKAAEANRDNLSTLMVTYPS-THGVYEEGIDEICKIIHDN-GGQVYMDGANMNAQVGLTS---PGYIGADVCH 788 (985)
Q Consensus 714 ~iD~e~L~~~i~~~~~~t~~Vvv~~pn-~~G~i~~di~eI~~la~~~-galliVD~a~~~~~~~l~~---pg~~g~Di~~ 788 (985)
.+|++++++ .+++|++++|+ ++|.+. +.+++.++++.+ |+++++|+++.. +++-.. .....-.+++
T Consensus 135 ~~d~~~l~~-------~~~~v~~~~P~NPtG~~~-~~~~~~~l~~~~~~~~livDe~y~~-~~~~~~~~~~~~~~~~i~~ 205 (353)
T PRK05387 135 SIDVEDYLR-------PNGGIIFPNPNAPTGIAL-PLAEIERILAANPDSVVVIDEAYVD-FGGESAIPLIDRYPNLLVV 205 (353)
T ss_pred CCCHHHHHh-------cCCEEEEeCCCCCCCCCC-CHHHHHHHHHhCCCcEEEEeCcccc-cCCcchHHHHhhCCCEEEE
Confidence 899998863 23568888994 799998 899999999876 999999998731 221100 0122345888
Q ss_pred eCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHHH
Q 001989 789 LNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGL 868 (985)
Q Consensus 789 ~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl 868 (985)
.|++|+|++| |.++|++++++++.+.+.... ......+.+..++ .++..++. ..+.+
T Consensus 206 ~S~SK~~~~~----GlR~G~~~~~~~~~~~l~~~~-------------~~~~~~~~~~~~q----~~~~~~l~--~~~~~ 262 (353)
T PRK05387 206 QTFSKSRSLA----GLRVGFAIGHPELIEALNRVK-------------NSFNSYPLDRLAQ----AGAIAAIE--DEAYF 262 (353)
T ss_pred EehhHhhcch----hhhceeeecCHHHHHHHHHhh-------------ccCCCCCcCHHHH----HHHHHHhc--CHHHH
Confidence 8999988654 678999998876654432110 0000111111111 11112222 23345
Q ss_pred HHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCCCC-CCCEEE
Q 001989 869 TEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWP-VPGTLM 946 (985)
Q Consensus 869 ~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~~p-~~~~lr 946 (985)
++..++..++++++.+.|++ ++.+ . ++ +..+ +.+.++ +.+..++++.|.++||.+.....+ ..+++|
T Consensus 263 ~~~~~~~~~~~~~l~~~L~~~g~~~-~-~~-~~~~--~~~~~~------~~~~~~~~~~l~~~gi~v~~~~~~~~~~~iR 331 (353)
T PRK05387 263 EETRAKVIATRERLVEELEALGFEV-L-PS-KANF--VFARHP------SHDAAELAAKLRERGIIVRHFNKPRIDQFLR 331 (353)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCeE-C-CC-cCcE--EEEECC------CCCHHHHHHHHHHCCEEEEECCCCCCCCeEE
Confidence 56666677888899999987 4433 2 22 2222 234433 356789999999999987543322 357899
Q ss_pred EeccCCCCHHHHHHHHccCChhHHHH
Q 001989 947 IEPTESESKSWTGIVMLSSPSEKKLH 972 (985)
Q Consensus 947 is~t~~~t~eeId~~~~~~~l~~~~~ 972 (985)
+++. +.+++++ +++.|++++.
T Consensus 332 is~~---~~~~~~~--~~~~L~~~~~ 352 (353)
T PRK05387 332 ITIG---TDEEMEA--LVDALKEILA 352 (353)
T ss_pred EEeC---CHHHHHH--HHHHHHHHhh
Confidence 9985 7799999 7788877654
|
|
| >KOG1360 consensus 5-aminolevulinate synthase [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.71 E-value=3e-16 Score=168.38 Aligned_cols=316 Identities=14% Similarity=0.176 Sum_probs=210.6
Q ss_pred cceecCCCCCCCCCcHHHHHHHHhCCccccccCCChhhHhhhHHHHHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHH
Q 001989 167 YKSFIGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAM 246 (985)
Q Consensus 167 ~~~~lG~g~y~~~~p~~v~~~i~~~~~~~t~~~pyq~e~sqg~l~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~ 246 (985)
.++|||++-+|...-+.-+ . +.+.+- +...-+-..|+-+-..+++..+|+|-+-|. +.++++.--+..+.+.
T Consensus 178 SNDYLgms~Hp~V~~A~~~-t-l~~hG~----GAGGTRNIsG~s~~hv~LE~eLA~LHqK~a--ALlFsSCfVANDstLf 249 (570)
T KOG1360|consen 178 SNDYLGMSRHPEVLDAMHD-T-LDRHGA----GAGGTRNISGHSKHHVRLEAELADLHQKEA--ALLFSSCFVANDSTLF 249 (570)
T ss_pred cCccccccCChHHHHHHHH-H-HHHcCC----CcCCccccCCCCchhhhHHHHHHHHhcCcc--eeeeeeeeeccchHHH
Confidence 4679999987655444442 2 333222 112224446777778889999999999887 4444444334444442
Q ss_pred HhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCchhhhc-c---CCC-EeEEEEEcC-CCCeeeccHHHHHH
Q 001989 247 CNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDLKDIDY-K---SGD-VCGVLVQYP-GTEGEVLDYGDFIK 320 (985)
Q Consensus 247 a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~~~l~~-l---~~~-t~~V~v~~p-n~~G~v~di~~I~~ 320 (985)
.+. .+-++-+|+.++.+|.|.+..++. +.--...+++.|+++|++ + ++. .+.|.+... ++.|.|.||+||++
T Consensus 250 tLa-k~lpgcei~SD~gNHASMI~GIrn-s~v~K~IFrHND~~hL~~lL~~~~~svPKivAFEtVhSM~GavcpleelcD 327 (570)
T KOG1360|consen 250 TLA-KKLPGCEIFSDEGNHASMIQGIRN-SRVPKHIFRHNDLDHLEQLLQSSPKSVPKIVAFETVHSMDGAVCPLEELCD 327 (570)
T ss_pred HHH-HHCCCcEEeccccchHHHHHHhhh-cCCcceeeccCCHHHHHHHHHhCCCCCCceEEEeeeeccCCCcCCHHHHHH
Confidence 221 112889999999999999999986 333456677789888876 3 333 466667664 89999999999999
Q ss_pred HHHhCCcEEEEEecCccccCCCCCCc-----c----cceEEEecC-ccccccCCCCCCcEEEEEEchhhHhcCCCceeee
Q 001989 321 NAHANGVKVVMATDLLALTILKPPGE-----L----GADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGV 390 (985)
Q Consensus 321 ~a~~~galliV~a~~~~lg~l~~~~~-----~----GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~ 390 (985)
++|++|++..+ ++.++.|+..+-|. - -+||+.|+. |+||. .| ||++.+..+++.+...
T Consensus 328 vah~yGAiTFl-DEVHAVGlYG~rGaGvgerdGvm~kvDiIsGTLgKafGc---VG----GYIAat~~LvDmiRSy---- 395 (570)
T KOG1360|consen 328 VAHKYGAITFL-DEVHAVGLYGPRGAGVGERDGVMHKVDIISGTLGKAFGC---VG----GYIAATRKLVDMIRSY---- 395 (570)
T ss_pred HHHHhCceeee-ehhhhhccccCCCCCccccCCcchhhhhcccchhhhccc---cc----ceehhhhhHHHHHHHh----
Confidence 99999999999 45677776654321 2 379999997 99974 44 5999888877654111
Q ss_pred eecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEc
Q 001989 391 SIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQ 470 (985)
Q Consensus 391 t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~ 470 (985)
..+|.++-+ - .+..+.+...++- -+-..|| +.+++...++..|+++.|.++| +.++
T Consensus 396 ------AaGFIFTTS-------------L--PP~vl~GAleaVr-~lk~~eg-~~lR~~hqrnv~~~kq~l~~~G-iPVi 451 (570)
T KOG1360|consen 396 ------AAGFIFTTS-------------L--PPMVLAGALEAVR-ILKSEEG-RVLRRQHQRNVKYVKQLLMELG-IPVI 451 (570)
T ss_pred ------cCceEEecC-------------C--ChHHHHhHHHHHH-HHhhhhh-HHHHHHHHHHHHHHHHHHHHcC-Cccc
Confidence 112433210 0 0123444444441 1223445 3456667888999999999998 8877
Q ss_pred CCCCcceEEEecCC---HHHHHHHHHH-cCceeeeec-------CCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 471 GLPFFDTVKVKCAD---AHAIASAAYK-IEMNLRVVD-------SNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 471 ~~~~~~~~~~~~~~---~~~v~~~L~~-~GI~~~~~~-------~~~lris~t~~~t~edId~li~aL~~ 529 (985)
..| .+.+.+.+.+ +.++.+.|.. +||++..+. .+.+|+.+|+.+|.+-++.|+++|..
T Consensus 452 ~~p-SHIiPv~vgda~l~~~~sd~Li~~h~iYvQaINyPTV~rG~E~LRiaPTP~HT~~mm~~lv~~l~~ 520 (570)
T KOG1360|consen 452 PNP-SHIIPVRVGDAALAKQASDILISKHNIYVQAINYPTVARGTERLRIAPTPHHTPQMMNILVNALLD 520 (570)
T ss_pred CCC-cceeeeeccCHHHHHHHHHHHHHhcCeEEEeccCCcccccceeeecCCCCCCCHHHHHHHHHHHHH
Confidence 433 2344444443 7778888875 599885431 36799999999999999999998863
|
|
| >PRK08361 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.9e-15 Score=175.12 Aligned_cols=301 Identities=16% Similarity=0.148 Sum_probs=187.3
Q ss_pred hhHHHHHHHHHHHHHHHhCC--Cccceec-CcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEE
Q 001989 628 QGYQEMFNNLGEWLCTITGF--DSFSLQP-NAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKI 704 (985)
Q Consensus 628 ~G~~~~~~e~~~~la~l~G~--~~~~~~~-~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~v 704 (985)
+|..++.+.+.+++.+.+|. +...+.. ++++++...+ ++.+. .++++|+++++.|..+...+...|+++
T Consensus 70 ~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~---~~~l~-----~~g~~Vlv~~p~y~~~~~~~~~~g~~~ 141 (391)
T PRK08361 70 AGIPELREAIAEYYKKFYGVDVDVDNVIVTAGAYEATYLA---FESLL-----EEGDEVIIPDPAFVCYVEDAKIAEAKP 141 (391)
T ss_pred CCcHHHHHHHHHHHHHHhCCCCCcccEEEeCChHHHHHHH---HHHhc-----CCCCEEEEcCCCCcccHHHHHHcCCEE
Confidence 56666666666666555564 3334444 4445555333 33321 367899999998888887788899999
Q ss_pred EEEcCCCC--CCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccC---HHHHHHHHHHcCCEEEEEccccccc-cC--
Q 001989 705 VSVGTDAK--GNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEG---IDEICKIIHDNGGQVYMDGANMNAQ-VG-- 775 (985)
Q Consensus 705 v~v~~d~~--g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~d---i~eI~~la~~~galliVD~a~~~~~-~~-- 775 (985)
+.+|++++ +.+|+++++++++ +++++|++++| |++|.+. | +++|+++|+++++++++|+++..-. .+
T Consensus 142 ~~v~~~~~~~~~~d~~~l~~~i~---~~~~~v~i~~p~NPtG~~~-~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~ 217 (391)
T PRK08361 142 IRIPLREENEFQPDPDELLELIT---KRTRMIVINYPNNPTGATL-DKEVAKAIADIAEDYNIYILSDEPYEHFLYEGAK 217 (391)
T ss_pred EEEecCCccCCCCCHHHHHHhcc---cccEEEEEeCCCCCCCcCc-CHHHHHHHHHHHHHcCeEEEEEcccccceeCCCC
Confidence 99998764 5799999999997 78899999998 4799987 6 8999999999999999999873211 00
Q ss_pred CCCCC--ccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHH
Q 001989 776 LTSPG--YIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALIL 853 (985)
Q Consensus 776 l~~pg--~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~ 853 (985)
..... ....++++.|++|+|+.| |.++|++++++++...+.... .....++++ ...
T Consensus 218 ~~~~~~~~~~~~i~~~s~SK~~~~~----GlRiG~~~~~~~~~~~~~~~~------------~~~~~~~~~------~~q 275 (391)
T PRK08361 218 HYPMIKYAPDNTILANSFSKTFAMT----GWRLGFVIAPEQVIKDMIKLH------------AYIIGNVAS------FVQ 275 (391)
T ss_pred CCCHhhcCCCCEEEEecCchhcCCc----HhhhhhhccCHHHHHHHHHHH------------hhhccCCCh------HHH
Confidence 00001 123467889999998543 456899998876654331100 000112211 111
Q ss_pred HHHHHHHHHhcH--HHHHHHHHHHHHHHHHHHHHhhccCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHH-C
Q 001989 854 PISYTYIAMMGS--KGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMD-Y 930 (985)
Q Consensus 854 ~~a~a~l~~lg~--eGl~~~~~~~~~~a~~l~~~L~~g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~-~ 930 (985)
.++...+.. +. +.+++..++..++.+++.+.|++...+.+..+.+..+ +.+.++. .+.+..+++++|.+ +
T Consensus 276 ~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~p~g~~~--~~~~l~~----~~~~~~~l~~~l~~~~ 348 (391)
T PRK08361 276 IAGIEALRS-KESWKAVEEMRKEYNERRKLVLKRLKEMPHIKVFEPKGAFY--VFANIDE----TGMSSEDFAEWLLEKA 348 (391)
T ss_pred HHHHHHhcC-CcccHHHHHHHHHHHHHHHHHHHHHHhCCCCeecCCCEEEE--EEEECCC----CCCCHHHHHHHHHHhC
Confidence 111122221 11 2355556666777888888887621332222322222 3345541 14567889988864 7
Q ss_pred CCccCCC-CCC--CCCEEEEeccCCCCHHHHHHHHccCChhHHHHh
Q 001989 931 GFHGPTM-SWP--VPGTLMIEPTESESKSWTGIVMLSSPSEKKLHR 973 (985)
Q Consensus 931 Gi~~~~~-~~p--~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~ 973 (985)
||.+... .|. .++++||++.. +.++++. .++.|++.+++
T Consensus 349 gv~v~pg~~f~~~~~~~iRi~~~~--~~~~l~~--al~~l~~~l~~ 390 (391)
T PRK08361 349 RVVVIPGTAFGKAGEGYIRISYAT--SKEKLIE--AMERMEKALEE 390 (391)
T ss_pred CEEEcCchhhCCCCCCEEEEEecC--CHHHHHH--HHHHHHHHHhc
Confidence 9987532 222 24789999874 6778888 66777776654
|
|
| >PRK08742 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=3.3e-15 Score=175.58 Aligned_cols=342 Identities=15% Similarity=0.171 Sum_probs=203.8
Q ss_pred ccccccccCCCccccccccccccccccCCCCchhhhhhHHHHHHHHHHHHHHHhCCC------ccceecCcHHHHHHHHH
Q 001989 592 IPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFD------SFSLQPNAGAAGEYAGL 665 (985)
Q Consensus 592 ~~lG~~t~~~~~~~~~~~~~~~~f~~~~p~~p~e~~~G~~~~~~e~~~~la~l~G~~------~~~~~~~sGa~a~~a~l 665 (985)
..+|++++.+..+...+........+. .+.. +...++.+.+++++.-. ...++.+||++|+++++
T Consensus 76 ~~lGh~~p~i~~Ai~~q~~~l~~~~~~-~~~~--------~~~~~lae~L~~~~p~~~~~~~~~~v~f~~sGSEAvE~Al 146 (472)
T PRK08742 76 NLFGHAEPRIGAAIAAQAGELEQVMLA-GFTH--------EPAVQLAEQLLAIAPRQDGRAPLSKVFYADNGSAGVEVAL 146 (472)
T ss_pred ccCCCCCHHHHHHHHHHHHhCCCcccc-ccCC--------HHHHHHHHHHHHhCCCcccCCCCCEEEEeCCchHHHHHHH
Confidence 457888777766554443111111111 0110 12346778888877421 13577899999999999
Q ss_pred HHHHHHHHhcCCCCCCEEEE-cCCCCcccHHHHHHCCc------------EEEEEcCCCC-----CC-------CCHHHH
Q 001989 666 MVIRAYHKARGDHHRNVCII-PVSAHGTNPATAAMCGM------------KIVSVGTDAK-----GN-------INIEEL 720 (985)
Q Consensus 666 ~air~~~~~~g~~~~~~IIv-~~~~Hg~~~~~a~~~G~------------~vv~v~~d~~-----g~-------iD~e~L 720 (985)
+.+|.|...+|..++.+||. ..++||....+....|. .+..+|.... +. .+++.+
T Consensus 147 KlAr~~~~~~g~~~r~~ii~~~~syHG~t~gals~~~~~~~~~~~~p~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l 226 (472)
T PRK08742 147 KMAFHYFHNRGEHRRTRFIALENGYHGETIGALAVGDIPLYRRVYAPLLLESLFAPSPDAYLAEPGQSAEDYALQAADAL 226 (472)
T ss_pred HHHHHHHHhcCCCCCcEEEEECCCcCCCchhhhhccCCcccccccCCCCCCCEEeCCCCccccccCCCHHHHHHHHHHHH
Confidence 99998865555334567765 67899987555432221 2333443211 11 136778
Q ss_pred HHHHHhcCCCEEEEEEEc-C-CCcccccc---CHHHHHHHHHHcCCEEEEEccccccccCCCCCCcc--------CCcEE
Q 001989 721 RKAAEANRDNLSTLMVTY-P-STHGVYEE---GIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYI--------GADVC 787 (985)
Q Consensus 721 ~~~i~~~~~~t~~Vvv~~-p-n~~G~i~~---di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~--------g~Di~ 787 (985)
++.++++.+++++|+++- . ...|++.+ -++++.++|+++|+++|+|+++ .|+.++|.+ -+|++
T Consensus 227 ~~~~~~~~~~iAAvI~EPviqg~gG~~~~p~~fl~~lr~lc~~~gillI~DEV~----TGfGRtG~~~a~e~~gv~PDiv 302 (472)
T PRK08742 227 QALFEQSPGEICALILEPRLQCAGGMRMHHPAYLRRARELCDAHGAFLIADEIA----TGFGRTGTLFACEQAGVMPDLL 302 (472)
T ss_pred HHHHHhCCCceEEEEEccccccCCCcccCCHHHHHHHHHHHHHcCCEEEEechh----hCCCCCccchHHHhcCCCCCEE
Confidence 888865556889998875 2 34566542 3899999999999999999876 445555533 27999
Q ss_pred EeCCcccccccCCCC-CCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHH
Q 001989 788 HLNLHKTFCIPHGGG-GPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSK 866 (985)
Q Consensus 788 ~~s~hK~l~~p~g~G-GPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~e 866 (985)
+++ |.++ +| -| +|.+++++++.+.+..... . ......+++.|+++.++++.+.|..+.++
T Consensus 303 ~~g--Kgl~----gG~~P-laav~~~~ei~~~~~~~~~-----------~-~~~~h~~T~~gnpl~~Aaa~a~L~~i~~~ 363 (472)
T PRK08742 303 CLS--KGLT----GGFLP-LSAVLATQQLYDAFLDDSR-----------E-RAFLHSHSYTGNPLACAAALATLDIFADD 363 (472)
T ss_pred EEc--cccc----CCCCC-cceeeccHHHHHHhhccCc-----------c-CccCcCCCCCccHHHHHHHHHHHHHHHHC
Confidence 874 7763 33 25 5556667766543321100 0 00012234567888888888999988877
Q ss_pred HHHHHHHHHHHHHHHHHHHhhc--cCCee--ecCCCCceeeEEEEEecCccccC-CCC---HHHHHHHHHHCCCccCCCC
Q 001989 867 GLTEASKIAILNANYMAKRLEK--HYPIL--FRGVNGTVAHEFIVDLRGLKNTA-GIE---PEDVAKRLMDYGFHGPTMS 938 (985)
Q Consensus 867 Gl~~~~~~~~~~a~~l~~~L~~--g~~l~--~~~~~~~~~~~~iv~~~~~~~~~-g~~---~~~v~~~L~~~Gi~~~~~~ 938 (985)
++.+ +..+..++|.+.++. .+.++ +.+. + .+..+.+..+.-.+.. ..+ ...+.+++.++|+++...
T Consensus 364 ~l~~---~~~~~g~~l~~~~~~~~~~~~i~dvRG~-G-l~~giel~~~~~~~~~~~~~~~~~~~~~~~~~~~Gll~~~~- 437 (472)
T PRK08742 364 DVIA---RNQPTAARMTQLAAQIGEHPHVADVRQA-G-MVVAFELTRGGNKRTPFPPAARVGLHAYRAALARGVVLRPL- 437 (472)
T ss_pred CHHH---HHHHHHHHHHHHHHHHhcCCCeeeEecc-c-eEEEEEeccCccccccCCchhHHHHHHHHHHHHCCeEEEec-
Confidence 6654 444555666654432 12221 1121 1 2222222111000000 001 245778888999987543
Q ss_pred CCCCCEEEEeccCCCCHHHHHHHHccCChhHHHHhhcc
Q 001989 939 WPVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRLKM 976 (985)
Q Consensus 939 ~p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~~~ 976 (985)
.+.|||.|+...|++|||. ++++|+++++.+.+
T Consensus 438 ---g~vi~~~PpL~it~~ei~~--~~~~l~~~l~~~~~ 470 (472)
T PRK08742 438 ---GDVLYWMPPYCVDEAQLAL--LADTTRHAIDEAVA 470 (472)
T ss_pred ---CCEEEEECCCCCCHHHHHH--HHHHHHHHHHHHhc
Confidence 3799999999999999999 88999999887643
|
|
| >PLN03026 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.6e-15 Score=174.98 Aligned_cols=283 Identities=14% Similarity=0.110 Sum_probs=184.3
Q ss_pred HHHHHHHHHHhCCCccceecCcHHH-HHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcCCCCC
Q 001989 635 NNLGEWLCTITGFDSFSLQPNAGAA-GEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKG 713 (985)
Q Consensus 635 ~e~~~~la~l~G~~~~~~~~~sGa~-a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~d~~g 713 (985)
.++++++++++|.+..++..++|++ +. .++++.+. .++++|+++++.++.+...++..|++++.+|.++++
T Consensus 89 ~~lr~~ia~~~~~~~~~I~~t~Ga~~~i---~~~~~~~~-----~~gd~Vlv~~P~y~~y~~~~~~~g~~~~~v~~~~~~ 160 (380)
T PLN03026 89 RRLRAALAEDSGLESENILVGCGADELI---DLLMRCVL-----DPGDKIIDCPPTFGMYVFDAAVNGAEVIKVPRTPDF 160 (380)
T ss_pred HHHHHHHHHHhCcChhhEEEcCCHHHHH---HHHHHHhc-----CCCCEEEEcCCChHHHHHHHHHcCCEEEEeecCCCC
Confidence 4688899999998876666666654 33 23333321 367899999887766666678899999999987778
Q ss_pred CCCHHHHHHHHHhcCCCEEEEEEEcCC-CccccccCHHHHHHHHHHcCCEEEEEccccccccCCCC----CCccCCcEEE
Q 001989 714 NINIEELRKAAEANRDNLSTLMVTYPS-THGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTS----PGYIGADVCH 788 (985)
Q Consensus 714 ~iD~e~L~~~i~~~~~~t~~Vvv~~pn-~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~----pg~~g~Di~~ 788 (985)
.+|+++|++++.. +++++|++++|| ++|.+. +.+++.++++.. +++++|+++.. +..... .....-.+++
T Consensus 161 ~~d~~~l~~~~~~--~~~~~v~l~~P~NPTG~~~-~~~~l~~l~~~~-~~vi~DeaY~~-~~~~~~~~~~~~~~~~viv~ 235 (380)
T PLN03026 161 SLDVPRIVEAVET--HKPKLLFLTSPNNPDGSII-SDDDLLKILELP-ILVVLDEAYIE-FSTQESRMKWVKKYDNLIVL 235 (380)
T ss_pred CcCHHHHHHHHhc--cCCcEEEEeCCCCCCCCCC-CHHHHHHHHhcC-CEEEEECcchh-hcCCcchHHHHHhCCCEEEE
Confidence 8999999999831 688999999995 799998 899999999865 89999999731 111000 1122234778
Q ss_pred eCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHHH
Q 001989 789 LNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGL 868 (985)
Q Consensus 789 ~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl 868 (985)
.|+.|.|++| |.++|++++++++...+... + ...+++. .++ .++.++|.. .+-+
T Consensus 236 ~SfSK~~gla----GlRiGy~~~~~~~i~~l~~~------------~--~~~~~~~--~~q----~aa~~aL~~--~~~~ 289 (380)
T PLN03026 236 RTFSKRAGLA----GLRVGYGAFPLSIIEYLWRA------------K--QPYNVSV--AAE----VAACAALSN--PKYL 289 (380)
T ss_pred ecchHhhcCc----cccceeeecCHHHHHHHHHh------------c--CCCCCCH--HHH----HHHHHHhhC--HHHH
Confidence 8888988654 78999999887665443210 0 0011211 111 112223321 2234
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCC-CCCCCEEEE
Q 001989 869 TEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMS-WPVPGTLMI 947 (985)
Q Consensus 869 ~~~~~~~~~~a~~l~~~L~~g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~-~p~~~~lri 947 (985)
++..+...++++++.+.|++.-.+...++ +..+ +.+.++ .+.+..++.+.|.++||.+.... .+.++++||
T Consensus 290 ~~~~~~~~~~r~~l~~~L~~~~~~~~~p~-~~~f--~~~~~~-----~~~~~~~~~~~l~~~gI~v~~~~~~~~~~~lRi 361 (380)
T PLN03026 290 EDVKNALVEERERLFGLLKEVPFLEPYPS-DANF--ILCRVT-----SGRDAKKLKEDLAKMGVMVRHYNSKELKGYIRV 361 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCeECCC-CCeE--EEEECC-----CCCCHHHHHHHHHHCCeEEEECCCCCCCCEEEE
Confidence 45555667778888888876211111122 2222 334543 13567899999999999875432 234579999
Q ss_pred eccCCCCHHHHHHHHccCChhH
Q 001989 948 EPTESESKSWTGIVMLSSPSEK 969 (985)
Q Consensus 948 s~t~~~t~eeId~~~~~~~l~~ 969 (985)
++. +.+|+++ +.+.|++
T Consensus 362 s~~---~~~~~~~--l~~al~~ 378 (380)
T PLN03026 362 SVG---KPEHTDA--LMEALKQ 378 (380)
T ss_pred ecC---CHHHHHH--HHHHHHH
Confidence 984 7889999 5555543
|
|
| >PRK07309 aromatic amino acid aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.70 E-value=4.3e-15 Score=172.15 Aligned_cols=306 Identities=14% Similarity=0.143 Sum_probs=186.4
Q ss_pred hhHHHHHHHHHHHHHHHhCCC---ccce-ecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcE
Q 001989 628 QGYQEMFNNLGEWLCTITGFD---SFSL-QPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMK 703 (985)
Q Consensus 628 ~G~~~~~~e~~~~la~l~G~~---~~~~-~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~ 703 (985)
.|..++.+.+.+++...+|.. ...+ ..+++++|...++.++ . .++++|+++++.|+.+...++..|++
T Consensus 67 ~g~~~lr~~ia~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~~---~-----~~gd~vl~~~p~y~~~~~~~~~~g~~ 138 (391)
T PRK07309 67 AGLLELRQAAADFVKEKYNLDYAPENEILVTIGATEALSASLTAI---L-----EPGDKVLLPAPAYPGYEPIVNLVGAE 138 (391)
T ss_pred CCcHHHHHHHHHHHHHHhCCCCCCCCcEEEeCChHHHHHHHHHHh---c-----CCCCEEEEeCCCCcchHHHHHHcCCE
Confidence 465555555555555555542 2234 4455555554333322 1 36789999988887777778889999
Q ss_pred EEEEcCCCC-CCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccc--cCHHHHHHHHHHcCCEEEEEcccccccc-C-C-
Q 001989 704 IVSVGTDAK-GNINIEELRKAAEANRDNLSTLMVTYP-STHGVYE--EGIDEICKIIHDNGGQVYMDGANMNAQV-G-L- 776 (985)
Q Consensus 704 vv~v~~d~~-g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~--~di~eI~~la~~~galliVD~a~~~~~~-~-l- 776 (985)
++.+|.+++ +.+|+++|++++++.++++++|++++| |++|.+- .++++|+++|+++|+++++|+++..-.- + .
T Consensus 139 ~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~i~l~~P~NPtG~~~s~~~~~~l~~~~~~~~~~ii~D~~y~~~~~~~~~~ 218 (391)
T PRK07309 139 IVEIDTTENDFVLTPEMLEKAILEQGDKLKAVILNYPANPTGVTYSREQIKALADVLKKYDIFVISDEVYSELTYTGEPH 218 (391)
T ss_pred EEEEecCCcCCcCCHHHHHHHhhccCCCeEEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEEccccceeeCCCCC
Confidence 999998654 579999999999744457899999998 5799874 2589999999999999999998742110 1 0
Q ss_pred CCCCccCC--cEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHH
Q 001989 777 TSPGYIGA--DVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILP 854 (985)
Q Consensus 777 ~~pg~~g~--Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~ 854 (985)
.....+.. -+++.|++|.|+.| |.++|++++++++.+.+.... .....+.+ ...+ .
T Consensus 219 ~~~~~~~~~~~i~~~S~SK~~g~~----GlRvG~~v~~~~~~~~~~~~~------------~~~~~~~~--~~~q----~ 276 (391)
T PRK07309 219 VSIAEYLPDQTILINGLSKSHAMT----GWRIGLIFAPAEFTAQLIKSH------------QYLVTAAT--TMAQ----F 276 (391)
T ss_pred CCHHHhccCCEEEEecChhhccCc----cceeEEEEeCHHHHHHHHHHH------------hhcccCCC--hHHH----H
Confidence 01111112 37788999998654 678999999877654432100 00001111 1111 1
Q ss_pred HHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHH-HHCCC
Q 001989 855 ISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRL-MDYGF 932 (985)
Q Consensus 855 ~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L-~~~Gi 932 (985)
++..++.. +..-.....++..++++++.+.|++ ++.+. .+.+.++ +.+.++. ..+.+..+++++| .++||
T Consensus 277 ~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~p~gg~~--~~~~l~~---~~~~~~~~~~~~l~~~~gv 348 (391)
T PRK07309 277 AAVEALTN-GKDDALPMKKEYIKRRDYIIEKMTDLGFKII--KPDGAFY--IFAKIPA---GYNQDSFKFLQDFARKKAV 348 (391)
T ss_pred HHHHHHhC-ChhHHHHHHHHHHHHHHHHHHHHHHCCCeec--CCCeeEE--EEEECCC---CCCCCHHHHHHHHHHhCCE
Confidence 12222321 2221223334456677888888876 44332 2222222 2344431 0122467788775 46799
Q ss_pred ccCCCC-C-C-CCCEEEEeccCCCCHHHHHHHHccCChhHHHHhhc
Q 001989 933 HGPTMS-W-P-VPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRLK 975 (985)
Q Consensus 933 ~~~~~~-~-p-~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~~ 975 (985)
.+.... | + .++++||++.. +.++++. .++.|++++++++
T Consensus 349 ~v~pg~~f~~~~~~~iRi~~~~--~~~~l~~--~i~~l~~~~~~~~ 390 (391)
T PRK07309 349 AFIPGAAFGPYGEGYVRLSYAA--SMETIKE--AMKRLKEYMEEHA 390 (391)
T ss_pred EEeCchhhCCCCCCEEEEEecC--CHHHHHH--HHHHHHHHHHhhc
Confidence 875322 2 2 25799999874 5789999 7788988887765
|
|
| >PRK12389 glutamate-1-semialdehyde aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.3e-15 Score=175.91 Aligned_cols=319 Identities=14% Similarity=0.158 Sum_probs=196.8
Q ss_pred ccccccccCCCccccccccccccccccCCCCchhhhhhHHHHHHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHH
Q 001989 592 IPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAY 671 (985)
Q Consensus 592 ~~lG~~t~~~~~~~~~~~~~~~~f~~~~p~~p~e~~~G~~~~~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~ 671 (985)
..+|+|++.+..+...+......+...++ ...++.+.|++++......++.+||++|++++++.+|.|
T Consensus 65 ~~lGh~~p~v~~ai~~q~~~~~~~~~~~~------------~~~~la~~l~~~~p~~~~v~f~~sGseA~e~AlklAr~~ 132 (428)
T PRK12389 65 IITGHAHPHITKAITEAAENGVLYGTPTE------------LEIEFAKMLKEAIPSLEKVRFVNSGTEAVMTTIRVARAY 132 (428)
T ss_pred cccCCCCHHHHHHHHHHHHhCCccCCCCH------------HHHHHHHHHHHhCCCCcEEEEeCCHHHHHHHHHHHHHHh
Confidence 45898888777665554422111211111 134677788887642223567899999999999999886
Q ss_pred HHhcCCCCCCEEEE-cCCCCcccHHHHHHCCc-------------------EEEEEcCCCCCCCCHHHHHHHHHhcCCCE
Q 001989 672 HKARGDHHRNVCII-PVSAHGTNPATAAMCGM-------------------KIVSVGTDAKGNINIEELRKAAEANRDNL 731 (985)
Q Consensus 672 ~~~~g~~~~~~IIv-~~~~Hg~~~~~a~~~G~-------------------~vv~v~~d~~g~iD~e~L~~~i~~~~~~t 731 (985)
. ++.+||. ...+||.........|. ++..+|. .|++++++.++++.+++
T Consensus 133 t------gr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~l~~~l~~~~~~v 201 (428)
T PRK12389 133 T------GRTKIIKFAGCYHGHSDLVLVAAGSGPSTLGTPDSAGVPKSIAQEVITVPF-----NDIEALKEALDKWGDEV 201 (428)
T ss_pred h------CCCEEEEECCCcCCChHHHHHhcCCcccccCCCCCCCCCCcccCceEEcCC-----CCHHHHHHHHHhcCCcE
Confidence 2 4556665 67899977655433221 1222332 38999999997665678
Q ss_pred EEEEEEcC-CCccccccC----HHHHHHHHHHcCCEEEEEccccccccCCCCCC------c--cCCcEEEeCCccccccc
Q 001989 732 STLMVTYP-STHGVYEEG----IDEICKIIHDNGGQVYMDGANMNAQVGLTSPG------Y--IGADVCHLNLHKTFCIP 798 (985)
Q Consensus 732 ~~Vvv~~p-n~~G~i~~d----i~eI~~la~~~galliVD~a~~~~~~~l~~pg------~--~g~Di~~~s~hK~l~~p 798 (985)
++|+++-. +..|++. + +++|.++|+++|+++|+|+++. |+ +.+ . ..+|+++++ |.+
T Consensus 202 aavi~EPv~g~~G~~~-p~~~yl~~l~~lc~~~g~llI~DEV~t----G~-Rt~~~~a~~~~gv~PDivt~g--K~l--- 270 (428)
T PRK12389 202 AAVLVEPIVGNFGIVE-PKPGFLEAVNELAHEAGALVIYDEVIT----AF-RFMYGGAQDLLGVEPDLTALG--KII--- 270 (428)
T ss_pred EEEEEeCCCCCCCCcC-CCHHHHHHHHHHHHHcCCEEEEEcccc----cc-ccCcchhhHHhCCCCCeeeec--hhh---
Confidence 88888753 4567775 5 9999999999999999999873 22 221 1 237987653 766
Q ss_pred CCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHHHHHHHHHHHHH
Q 001989 799 HGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILN 878 (985)
Q Consensus 799 ~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~ 878 (985)
++|-| +|.+++++++.+.+... + .....+++.|+++.++++.+.|..+..+++ .++..++
T Consensus 271 -ggG~P-i~av~~~~~i~~~~~~~--~-------------~~~~~~T~~gnpl~~Aaala~L~~l~~~~l---~~~~~~~ 330 (428)
T PRK12389 271 -GGGLP-IGAYGGRKDIMEQVAPL--G-------------PAYQAGTMAGNPASMAAGIACLEVLQQEGV---YEKLDRL 330 (428)
T ss_pred -cCCCc-eeEEeEHHHHHhhhccC--C-------------CcccccCCccCHHHHHHHHHHHHHHhcccH---HHHHHHH
Confidence 44445 44557787776655310 0 001123456678888888899998876654 4467778
Q ss_pred HHHHHHHhhcc---CCee--ecCCCCceeeEEEEEecCccc-----c-CCCCHHHHHHHHHHCCCccCCCCCCCCCEEEE
Q 001989 879 ANYMAKRLEKH---YPIL--FRGVNGTVAHEFIVDLRGLKN-----T-AGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMI 947 (985)
Q Consensus 879 a~~l~~~L~~g---~~l~--~~~~~~~~~~~~iv~~~~~~~-----~-~g~~~~~v~~~L~~~Gi~~~~~~~p~~~~lri 947 (985)
.++|+++|++. +++. ...- ...+ .+.+....... . .......+.+.|.++|+++.....+ . +
T Consensus 331 g~~l~~~L~~l~~~~~~~~~v~r~-~g~~-gi~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~---~--~ 403 (428)
T PRK12389 331 GAMLEEGILEAAEKHGITITINRL-KGAL-TVYFTDEKVTNYDQAERSDGEAFGKFFKLMLNQGINLAPSKYE---A--W 403 (428)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEec-CcEE-EEEEeCCCCCChhhhcccCHHHHHHHHHHHHHCCcEeecCCCC---C--e
Confidence 88888888752 2221 1111 1122 12221110000 0 0001356788899999988544322 2 3
Q ss_pred eccCCCCHHHHHHHHccCChhHHHHh
Q 001989 948 EPTESESKSWTGIVMLSSPSEKKLHR 973 (985)
Q Consensus 948 s~t~~~t~eeId~~~~~~~l~~~~~~ 973 (985)
.|+..+|++|||+ +++++++++.+
T Consensus 404 ~~~l~~t~e~id~--~~~~l~~~l~~ 427 (428)
T PRK12389 404 FLTTAHTEEDIEE--TLEAVDRAFAQ 427 (428)
T ss_pred eecCCCCHHHHHH--HHHHHHHHHHh
Confidence 4778999999999 77888888764
|
|
| >PRK07030 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=3e-15 Score=175.97 Aligned_cols=339 Identities=14% Similarity=0.151 Sum_probs=207.3
Q ss_pred ccccccccCCCccccccccccccccccCCCCchhhhhhHHHHHHHHHHHHHHHhCCC-ccceecCcHHHHHHHHHHHHHH
Q 001989 592 IPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFD-SFSLQPNAGAAGEYAGLMVIRA 670 (985)
Q Consensus 592 ~~lG~~t~~~~~~~~~~~~~~~~f~~~~p~~p~e~~~G~~~~~~e~~~~la~l~G~~-~~~~~~~sGa~a~~a~l~air~ 670 (985)
..||++++.+..+...+.......... .+. .+...++.+.+++++..+ ...++.+||++|++++++.+|.
T Consensus 59 ~~lGh~~p~v~~Ai~~ql~~l~~~~~~-~~~--------~~~~~~lae~L~~~~p~~~~~v~f~~sGsEAve~AlKlAr~ 129 (466)
T PRK07030 59 NVFGHANPRINQRIKDQVDQLEHVILA-GFS--------HEPVIELSERLVKITPPGLSRCFYADNGSSAIEVALKMSFH 129 (466)
T ss_pred hcCCCCCHHHHHHHHHHHHhcCCcccc-ccC--------CHHHHHHHHHHHHhCCCCcCEEEEeCCcHHHHHHHHHHHHH
Confidence 357888777766544443221111110 011 122446778888887422 2357789999999999999998
Q ss_pred HHHhcCCCCCCEEEE-cCCCCcccHHHHHHCCc------------EEEEEcCCCC-----C-------CCCHHHHHHHHH
Q 001989 671 YHKARGDHHRNVCII-PVSAHGTNPATAAMCGM------------KIVSVGTDAK-----G-------NINIEELRKAAE 725 (985)
Q Consensus 671 ~~~~~g~~~~~~IIv-~~~~Hg~~~~~a~~~G~------------~vv~v~~d~~-----g-------~iD~e~L~~~i~ 725 (985)
|...+|.+++.+||. ...+||....+....|- .+..+|.... + ..+++++++.++
T Consensus 130 ~~~~~g~t~r~~ii~~~~~yHG~t~ga~s~~~~~~~~~~~~p~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~le~~~~ 209 (466)
T PRK07030 130 YWRNRGKPRKKRFVTLTNSYHGETLAAMSVGDVALFTETYKPLLLDTIKVPSPDCYLRPEGMSWEEHSRRMFAHMEQTLA 209 (466)
T ss_pred HHHHhCCCCCcEEEEECCCcCcccHHHHhccCCccccccCCccCCCCEEcCCCCccccccCCCHHHHHHHHHHHHHHHHH
Confidence 865555434566765 67899977555432221 1333443211 1 113677888887
Q ss_pred hcCCCEEEEEEEc-C-CCcccccc---CHHHHHHHHHHcCCEEEEEccccccccCCCCCCcc--------CCcEEEeCCc
Q 001989 726 ANRDNLSTLMVTY-P-STHGVYEE---GIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYI--------GADVCHLNLH 792 (985)
Q Consensus 726 ~~~~~t~~Vvv~~-p-n~~G~i~~---di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~--------g~Di~~~s~h 792 (985)
++.+++++|+++- . ...|++.+ -+++|.++|+++|+++|+|+++ .|+.+.|.+ -+|+++++
T Consensus 210 ~~~~~iAAvi~EP~iqg~gG~~~~~~~yl~~lr~lc~~~g~llI~DEV~----TGfGRtG~~~a~~~~gv~PDiv~~g-- 283 (466)
T PRK07030 210 EHHDEIAAVIVEPLIQGAGGMRMYHPVYLKLLREACDRYGVHLIHDEIA----VGFGRTGTMFACEQAGIRPDFLCLS-- 283 (466)
T ss_pred hCCCceEEEEEecccccCCCcccCCHHHHHHHHHHHHHcCCEEEEeehh----hCcCccccchHHHhcCCCCCEEeee--
Confidence 6667899998875 2 34566542 3899999999999999999876 445555542 27999874
Q ss_pred ccccccCCCC-CCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHHHHHH
Q 001989 793 KTFCIPHGGG-GPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEA 871 (985)
Q Consensus 793 K~l~~p~g~G-GPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl~~~ 871 (985)
|.++ +| -| +|.+++++++.+.+.... . .... ....+++.|+++.++++.+.|+.+.++++.
T Consensus 284 Kgl~----gG~~P-i~av~~~~ei~~~~~~~~-~---------~~~~-~~h~~T~~gnpla~aaa~a~L~~i~~~~l~-- 345 (466)
T PRK07030 284 KALT----GGYLP-LAAVLTTDTVYQAFYDDY-P---------TLRA-FLHSHSYTGNPLACAAALATLDIFEQDNVI-- 345 (466)
T ss_pred hhcc----CCccc-ceEEEecHHHHHHHhccc-c---------cccc-cccCCCCCCCHHHHHHHHHHHHHHHhcCHH--
Confidence 7763 33 25 566666777654431100 0 0000 011234567888888888999988776554
Q ss_pred HHHHHHHHHHHHHHhhcc--CCee--ecCCCCceeeEEEEEecC--c-cccCCC---CHHHHHHHHHHCCCccCCCCCCC
Q 001989 872 SKIAILNANYMAKRLEKH--YPIL--FRGVNGTVAHEFIVDLRG--L-KNTAGI---EPEDVAKRLMDYGFHGPTMSWPV 941 (985)
Q Consensus 872 ~~~~~~~a~~l~~~L~~g--~~l~--~~~~~~~~~~~~iv~~~~--~-~~~~g~---~~~~v~~~L~~~Gi~~~~~~~p~ 941 (985)
++..++.++|+++|++. ...+ +.+. + .+ +.+.+.. . +.+... ....+.+++.++|+++...
T Consensus 346 -~~~~~~G~~l~~~L~~l~~~~~v~~vrG~-G-l~--~gie~~~~~~~~~~~~~~~~~~~~i~~~~~~~Gvl~~~~---- 416 (466)
T PRK07030 346 -ENNRALARRMAEATAHLADHPHVAEVRQT-G-MI--LAIEMVQDKASKTPYPWQERRGLKVYQHALERGALLRPL---- 416 (466)
T ss_pred -HHHHHHHHHHHHHHHHHhcCCCEEEeEec-e-eE--EEEEeccCccccccCcchhHHHHHHHHHHHHCCeEEEec----
Confidence 46667788888888652 2211 1121 1 12 2222210 0 000000 1246788889999987533
Q ss_pred CCEEEEeccCCCCHHHHHHHHccCChhHHHHhh
Q 001989 942 PGTLMIEPTESESKSWTGIVMLSSPSEKKLHRL 974 (985)
Q Consensus 942 ~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~ 974 (985)
.+.+|+.|+..+|++|||. ++++++++++.+
T Consensus 417 g~~i~~~Ppl~it~~eid~--~~~~l~~al~~~ 447 (466)
T PRK07030 417 GSVVYFLPPYVITPEQIDF--LAEVASEGIDIA 447 (466)
T ss_pred CCEEEEECCccCCHHHHHH--HHHHHHHHHHHH
Confidence 3689999999999999999 889999999887
|
|
| >TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.8e-15 Score=172.29 Aligned_cols=272 Identities=18% Similarity=0.184 Sum_probs=185.6
Q ss_pred HHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc---h
Q 001989 213 LLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL---K 289 (985)
Q Consensus 213 i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~---~ 289 (985)
..++++.+|+++|.+. +.++.+|++++.+++. . + ++||+||+++..|+++...|+.+++..|++++++|. +
T Consensus 49 ~~~le~~la~l~g~~~--~l~~~sG~~al~~~l~-l-l--~~Gd~Vl~~~~~y~~~~~~~~~~~~~~G~~v~~vd~~d~~ 122 (378)
T TIGR01329 49 RTALESLLAKLDKADR--AFAFSSGMAALDVITR-L-L--NNGDEIIAGDDLYGGTDRLLTQVVPRSGVVVVHVDTTDLD 122 (378)
T ss_pred HHHHHHHHHHHhCCCc--EEEECCHHHHHHHHHH-H-h--CCCCEEEEcCCCchHHHHHHHHHHHHcCcEEEEeCCCCHH
Confidence 4568899999999854 6677888876655332 2 2 389999999999999988887767778999999976 4
Q ss_pred hhhc-cCCCEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCCCCCcccceEEEecC-ccccccCCCC
Q 001989 290 DIDY-KSGDVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKPPGELGADIVVGSA-QRFGVPMGYG 366 (985)
Q Consensus 290 ~l~~-l~~~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~~~~~~GaDi~v~s~-k~lg~P~~~G 366 (985)
++++ ++++|++|++++| |++|.+.|+++|+++||++|++++||. .++.+....|.++|+|++++|+ |++++|.
T Consensus 123 ~le~~i~~~tklv~le~psnptg~v~dl~~I~~la~~~g~~vivD~-a~~~~~~~~~l~~g~Di~v~S~tK~l~G~~--- 198 (378)
T TIGR01329 123 KVKAALGPKTKLVLLESPTNPLQKIVDIRKISEMAHAQNALVVVDN-TMMSPLLCNPLELGADIVYHSATKFLAGHS--- 198 (378)
T ss_pred HHHHhcCcCceEEEEECCCCCCCeeecHHHHHHHHHHcCCEEEEEC-CCcccccCChhhcCCcEEEEecceeccCCc---
Confidence 5666 7889999999998 789999999999999999999999953 4555555667789999999998 7775432
Q ss_pred CCcEEEEEEchh-hHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcchHHH
Q 001989 367 GPHAAFLATSQE-YKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKT 445 (985)
Q Consensus 367 GP~~G~l~~~~~-~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~ 445 (985)
+.-+|+++++++ +.+++. ..++..|+ +. ++. .+ |+...+.+-+..
T Consensus 199 ~~~~G~v~~~~~~~~~~~~-------------------------~~~~~~G~---~~-~~~---~a--~l~~~~l~tl~~ 244 (378)
T TIGR01329 199 DVMAGVLAVKGEEIAKKVY-------------------------FLQNSTGS---GL-APF---DC--WLLLRGIKTLAI 244 (378)
T ss_pred cceeEEEEeCcHHHHHHHH-------------------------HHHHhcCC---cC-CHH---HH--HHHHccCCCHHH
Confidence 122688888653 323331 00111110 00 111 11 334556677888
Q ss_pred HHHHHHHHHHHHHHHHhcCCCeE-Ec-C---C-C-----------CcceEEEecCC---HHHHHHHHHHcCceeee----
Q 001989 446 IAQRVHGLAGTFALGLKKLGTVE-VQ-G---L-P-----------FFDTVKVKCAD---AHAIASAAYKIEMNLRV---- 501 (985)
Q Consensus 446 i~~~~~~~a~~l~~~L~~~g~~~-~~-~---~-~-----------~~~~~~~~~~~---~~~v~~~L~~~GI~~~~---- 501 (985)
+.++..+++..+.+.|++...++ +. . . | +...|+|.+.+ +.++.+.|...+|.++.
T Consensus 245 R~e~~~~na~~la~~L~~~~~v~~v~~p~l~~~p~~~l~~~~~~g~~~~~sf~~~~~~~~~~~~~~L~~~~i~~s~G~~~ 324 (378)
T TIGR01329 245 RIEKQQENARAIAMFLSTHPRVKKVRYAGLPSHPGFHLHFSQAKGAGSVLSFETGSVALSKRLVEATKLFSITVSFGSVN 324 (378)
T ss_pred HHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHHhCCCcceEEEEEECCHHHHHHHHHhCcCcccccCCCCCC
Confidence 88888999999999998764332 21 1 1 1 11357777754 66788888655553210
Q ss_pred -----------------------ecCCeEEEEeccCCCHHHHHHHHHHHh
Q 001989 502 -----------------------VDSNTVTASFDETTTLEDVDKLFIVFA 528 (985)
Q Consensus 502 -----------------------~~~~~lris~t~~~t~edId~li~aL~ 528 (985)
+.++.+|+|++.-+.++=|+.|-++|.
T Consensus 325 sl~~~p~~~~~~~~~~~~~~~~gi~~~liR~svGlE~~~dl~~dl~~al~ 374 (378)
T TIGR01329 325 SLISMPCFMSHASIPAEVREERGLPEDLVRLSVGIEDVDDLISDLDIAFV 374 (378)
T ss_pred ceeeCCCccccccCCHHHHHhcCCCCCeEEEEeccCCHHHHHHHHHHHHH
Confidence 113678898886554444455555554
|
This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys. |
| >PRK13578 ornithine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=5.8e-16 Score=185.56 Aligned_cols=283 Identities=11% Similarity=0.074 Sum_probs=196.6
Q ss_pred HHHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHH-HHHhhcCCCeEEEEeCc-
Q 001989 211 ESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDI-CITRADGFDIKVVVSDL- 288 (985)
Q Consensus 211 ~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~-~~~~a~~~gi~v~~v~~- 288 (985)
..+.|+|+.+|+++|++.+.+ +++|+|+++.+++++.. ++||+||+++++|.|+... +. ..|++.+++.+
T Consensus 174 G~i~eAq~~AA~~fgAd~tyF-lvNGTS~gn~a~i~a~~---~~Gd~VLvdRN~HKSv~hgaLi----LsGa~PVYl~P~ 245 (720)
T PRK13578 174 GAAKDAQKHAAKVFNADKTYF-VLNGTSASNKVVTNALL---TPGDLVLFDRNNHKSNHHGALI----QAGATPVYLETA 245 (720)
T ss_pred hHHHHHHHHHHHHhCCCceEE-EeCChhHHHHHHHHHhc---CCCCEEEeecccHHHHHHHHHH----HcCCeEEEeecc
Confidence 568899999999999998765 67888889999888753 3899999999999999985 43 25888888743
Q ss_pred ------------hh-----hhc-cC---CC-------EeEEEEEcCCCCeeeccHHHHHHH-HHhCCcEEEEE----ecC
Q 001989 289 ------------KD-----IDY-KS---GD-------VCGVLVQYPGTEGEVLDYGDFIKN-AHANGVKVVMA----TDL 335 (985)
Q Consensus 289 ------------~~-----l~~-l~---~~-------t~~V~v~~pn~~G~v~di~~I~~~-a~~~galliV~----a~~ 335 (985)
++ +++ +. ++ .++|++|+|||+|.+.|+++|+++ +|.++ .++|| ++.
T Consensus 246 ~n~~Gi~g~I~~~~~~~~~i~~~i~~~~p~~~~~~~p~k~vvit~pTYdG~~ydi~~I~~~~~h~~~-~llvDEAhgah~ 324 (720)
T PRK13578 246 RNPFGFIGGIDAHCFDEEYLREQIREVAPERADEARPFRLAVIQLGTYDGTIYNARQVVDKIGHLCD-YILFDSAWVGYE 324 (720)
T ss_pred ccccCCcCCCChHHccHHHHHHHHHhcCccccccccCceEEEEECCCCcceeecHHHHHHHhhccCC-cEEEeCcchhhh
Confidence 12 443 32 22 689999999999999999999999 68888 88884 222
Q ss_pred ccccC----CCCCCcccce----EEEecC-ccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeeccc
Q 001989 336 LALTI----LKPPGELGAD----IVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQT 406 (985)
Q Consensus 336 ~~lg~----l~~~~~~GaD----i~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~t 406 (985)
..... .....+.|+| +++.|. |.|++ ++ ++.++++++..++ | .+.|.
T Consensus 325 ~F~p~~~~~p~~al~~GaD~p~i~v~QStHKtL~a-lT----QaS~LHvk~~~i~-------g-------~~~~v----- 380 (720)
T PRK13578 325 QFIPMMADCSPLLLELNENDPGIFVTQSVHKQQAG-FS----QTSQIHKKDNHIK-------G-------QARYC----- 380 (720)
T ss_pred ccCcccccCChhhhhcCCCCCCeEEEEChhhcchh-hh----hHhhhhcCCcccc-------c-------ccccC-----
Confidence 11121 1122578999 999999 66643 22 3467776544321 1 00000
Q ss_pred ccccccccccCCCccchhHHHHHHHHHHH--HHhC-cchHHHHHHHHHHHHHHHHHHH-hcCCCeEEcCC----------
Q 001989 407 REQHIRRDKATSNICTAQALLANMAAMYA--VYHG-PEGLKTIAQRVHGLAGTFALGL-KKLGTVEVQGL---------- 472 (985)
Q Consensus 407 re~~irre~atsni~t~~~l~a~~aa~~l--~~~g-~~Gl~~i~~~~~~~a~~l~~~L-~~~g~~~~~~~---------- 472 (985)
.+.|...+-.-.-|+++++.++|++-. .++. +.| +++.+...+++..++++| +.+.+++++.+
T Consensus 381 --~~~r~~~al~m~qSTSPsY~LmASLDva~~~m~~~~G-~~l~~~~i~~a~~~R~~l~~~~~~~~~~~p~~v~~~~~~~ 457 (720)
T PRK13578 381 --PHKRLNNAFMLHASTSPFYPLFAALDVNAKMHEGESG-RRLWMECVKLGIEARKLILARCKLIRPFIPPVVDGKPWQD 457 (720)
T ss_pred --CHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHhhC-HHHHHHHHHHHHHHHHHHHHhCCCeeeccccccccccccc
Confidence 011112222223356889999999832 2232 234 567788888999999988 55544776621
Q ss_pred -------------------C------------Ccce--EEEecCC--------------HHHHHHHHHHcCceeeeecCC
Q 001989 473 -------------------P------------FFDT--VKVKCAD--------------AHAIASAAYKIEMNLRVVDSN 505 (985)
Q Consensus 473 -------------------~------------~~~~--~~~~~~~--------------~~~v~~~L~~~GI~~~~~~~~ 505 (985)
. ..++ ++|.+++ +..+.+.|+++||.++..+..
T Consensus 458 ~~~~~~~~~~~~w~~~p~~~whgf~~~~~~~~~lDP~KltI~t~G~~~~~G~~~~~Gipg~~l~~~L~e~gI~~E~~d~~ 537 (720)
T PRK13578 458 YPTEQIASDLRFFSFEPGEKWHGFEGYAEDQYFVDPCKLLLTTPGIDAETGEYEDFGIPATILANYLRENGIVPEKCDLN 537 (720)
T ss_pred CchhhhcccccccccccCccccccccccccccccCCceEEEEcCCcCcccccccccCccHHHHHHHHHHcCCEEEecCCC
Confidence 0 1132 4444443 378999998889999988888
Q ss_pred eEEEEeccCCCHHHHHHHHHHHhC
Q 001989 506 TVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 506 ~lris~t~~~t~edId~li~aL~~ 529 (985)
.+++-++..+|++++++|+++|..
T Consensus 538 ~vL~l~s~g~t~~~~~~Lv~aL~~ 561 (720)
T PRK13578 538 SILFLLTPAEDMAKLQQLVAMLAR 561 (720)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHH
Confidence 999999999999999999999974
|
|
| >PRK15029 arginine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.9e-15 Score=183.10 Aligned_cols=304 Identities=13% Similarity=0.070 Sum_probs=193.7
Q ss_pred HHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcCCCC-
Q 001989 634 FNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAK- 712 (985)
Q Consensus 634 ~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~d~~- 712 (985)
+.|+|+..|++||.+...|.+|++|.|+.++++++. +++|+||+++++|-+....+.+.|++++++++..+
T Consensus 207 I~eAq~~aA~~fgA~~t~FlvNGST~gn~a~i~a~~--------~~gd~Vlv~RN~HKSv~~al~L~ga~Pvyl~P~~~~ 278 (755)
T PRK15029 207 FGESEKYAARVFGADRSWSVVVGTSGSNRTIMQACM--------TDNDVVVVDRNCHKSIEQGLILTGAKPVYMVPSRNR 278 (755)
T ss_pred HHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHHhc--------CCCCEEEeecccHHHHHHHHHHcCCeEEEecccccc
Confidence 779999999999999988888988888877776553 47899999999999988889999999999975432
Q ss_pred ----CCCC-----HHHHHHHHHhcCCCEE--------EEEEEcCCCccccccCHHHHHHHHHHcCCEEEEEccccccccC
Q 001989 713 ----GNIN-----IEELRKAAEANRDNLS--------TLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVG 775 (985)
Q Consensus 713 ----g~iD-----~e~L~~~i~~~~~~t~--------~Vvv~~pn~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~ 775 (985)
+.++ ++.++++|+++ ++++ ++++++|++.|++. |+++|+++||++|+.|+||+||. ++..
T Consensus 279 ~Gi~~~i~~~~~~~e~i~~~l~~~-p~~k~~~~~~~~avvlt~PTY~Gv~~-di~~I~~~~h~~~~~llvDEAhG-ah~~ 355 (755)
T PRK15029 279 YGIIGPIYPQEMQPETLQKKISES-PLTKDKAGQKPSYCVVTNCTYDGVCY-NAKEAQDLLEKTSDRLHFDEAWY-GYAR 355 (755)
T ss_pred cCCccCCCccccCHHHHHHHHHhC-chhhhccccCceEEEEECCCCcceee-CHHHHHHHHHhcCCeEEEECccc-cccc
Confidence 4455 99999999765 3444 89999999999998 99999999999999999999984 2222
Q ss_pred CC--CCC---------c-cCCc-EEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCC
Q 001989 776 LT--SPG---------Y-IGAD-VCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTI 842 (985)
Q Consensus 776 l~--~pg---------~-~g~D-i~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i 842 (985)
|. -|. . .|+| +++.|.||+++.- -...++-++.. .+.+....+- +.. .....
T Consensus 356 F~~~~p~~sa~~~~~~~~~Gad~~vvqStHKtL~al-----TQaS~LHv~~~-~~~id~~r~~-------~~l-~~~qS- 420 (755)
T PRK15029 356 FNPIYADHYAMRGEPGDHNGPTVFATHSTHKLLNAL-----SQASYIHVREG-RGAINFSRFN-------QAY-MMHAT- 420 (755)
T ss_pred cCccccccccccccccccCCCceEEEEchhhcccch-----hhhhhheeCCC-ccccCHHHHH-------HHH-HHHcC-
Confidence 21 111 2 6899 9999999999531 13345544332 0011100000 000 00001
Q ss_pred CCcchhhhHHHHHHHHHHHH-hcHHHHHHHHHHHHHHHHHHHHHhhccCC------------------------------
Q 001989 843 AAAPWGSALILPISYTYIAM-MGSKGLTEASKIAILNANYMAKRLEKHYP------------------------------ 891 (985)
Q Consensus 843 ~s~~~g~~~~~~~a~a~l~~-lg~eGl~~~~~~~~~~a~~l~~~L~~g~~------------------------------ 891 (985)
+|..|-..+.+-.|..+|+. .|.+ ..++..+.+..++++|.+...
T Consensus 421 TSPSY~LmASLD~ar~~m~~~~G~~----l~~~~i~~~~~~r~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 496 (755)
T PRK15029 421 TSPLYAICASNDVAVSMMDGNSGLS----LTQEVIDEAVDFRQAMARLYKEFTADGSWFFKPWNKEVVTDPQTGKTYDFA 496 (755)
T ss_pred CCcHHHHHHHHHHHHHHHhhhhhHH----HHHHHHHHHHHHHHHHHhccccccccccccccccCcccccccccccccccc
Confidence 11222222333334444443 3433 344556666677777743100
Q ss_pred ------------eeecCC--C--C-------c---eeeEEEEEecCc-----cccCCCCHHHHHHHHHHCCCccCCCCCC
Q 001989 892 ------------ILFRGV--N--G-------T---VAHEFIVDLRGL-----KNTAGIEPEDVAKRLMDYGFHGPTMSWP 940 (985)
Q Consensus 892 ------------l~~~~~--~--~-------~---~~~~~iv~~~~~-----~~~~g~~~~~v~~~L~~~Gi~~~~~~~p 940 (985)
+...++ . + . ...-+++.++++ ..+.|+.+..+.+.|.++||.+-...
T Consensus 497 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~lDp~Klti~~~~~g~sG~~~~~gip~~~l~~~L~~~gI~~E~~~-- 574 (755)
T PRK15029 497 DAPTKLLTTVQDCWVMHPGESWHGFKDLPDNWSMLDPIKVSILAPGMGEDGELEETGVPAALVTAWLGRHGIVPTRTT-- 574 (755)
T ss_pred ccchhhhccccceeeecccccccCcccccccccccCCceEEEEcCCCCCCCcccccCCcHHHHHHHHHHcCCEEEecC--
Confidence 100000 0 0 0 001123443221 11234455599999988999875433
Q ss_pred CCCEEEEeccCCCCHHHHHHHHccCChhHHHH
Q 001989 941 VPGTLMIEPTESESKSWTGIVMLSSPSEKKLH 972 (985)
Q Consensus 941 ~~~~lris~t~~~t~eeId~~~~~~~l~~~~~ 972 (985)
...+.+-++..+|++++++ +++.|.++.+
T Consensus 575 -~~~vL~l~s~g~t~~~~~~--L~~aL~~~~~ 603 (755)
T PRK15029 575 -DFQIMFLFSMGVTRGKWGT--LVNTLCSFKR 603 (755)
T ss_pred -CCeEEEEeCCCCCHHHHHH--HHHHHHHHHH
Confidence 2577778888999999999 6667777644
|
|
| >PRK07495 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=4.2e-15 Score=173.14 Aligned_cols=330 Identities=15% Similarity=0.176 Sum_probs=200.0
Q ss_pred ccccccccCCCccccccccccccccc-cCCCCchhhhhhHHHHHHHHHHHHHHHhCCC--ccceecCcHHHHHHHHHHHH
Q 001989 592 IPLGSCTMKLNATTEMMPVTWPSFAN-IHPFAPADQAQGYQEMFNNLGEWLCTITGFD--SFSLQPNAGAAGEYAGLMVI 668 (985)
Q Consensus 592 ~~lG~~t~~~~~~~~~~~~~~~~f~~-~~p~~p~e~~~G~~~~~~e~~~~la~l~G~~--~~~~~~~sGa~a~~a~l~ai 668 (985)
..||++++.+..+...+......... .++. +...++.+.++++++-+ ...++.+||++|++++++.+
T Consensus 52 ~~lGh~~p~v~~ai~~ql~~l~~~~~~~~~~----------~~~~~la~~l~~~~p~~~~~~v~f~~SGseA~e~AlklA 121 (425)
T PRK07495 52 VNTGHRHPRVIAAVKAQLDRFTHTCHQVVPY----------ENYVRLAERLNALVPGDFAKKTIFVTTGAEAVENAVKIA 121 (425)
T ss_pred hccCCCCHHHHHHHHHHHhhccCcccCccCC----------HHHHHHHHHHHHhCCCCCCCEEEECCchHHHHHHHHHHH
Confidence 45898888777665554322111111 1111 22446778888887532 24578899999999999999
Q ss_pred HHHHHhcCCCCCCEEEE-cCCCCcccHHHHHHCC--------c-----EEEEEcCCCC--CC---CCHHHHHHHHHh--c
Q 001989 669 RAYHKARGDHHRNVCII-PVSAHGTNPATAAMCG--------M-----KIVSVGTDAK--GN---INIEELRKAAEA--N 727 (985)
Q Consensus 669 r~~~~~~g~~~~~~IIv-~~~~Hg~~~~~a~~~G--------~-----~vv~v~~d~~--g~---iD~e~L~~~i~~--~ 727 (985)
|.| +++.+||. ...+||....+....| + .++.+|.+.+ +. -+++++++.+++ .
T Consensus 122 r~~------tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~~~ 195 (425)
T PRK07495 122 RAA------TGRSAVIAFGGGFHGRTFMGMSLTGKVVPYKVGFGAMMPDVYHVPFPVELHGVSVEQSLAALDKLFKADVD 195 (425)
T ss_pred HHh------hCCCeEEEECCCcCCccHHHhhhcCCCcccccCCCCCCCCeEEecCCcccccccHHHHHHHHHHHHHhccC
Confidence 876 23456665 7789997654432211 1 3445555321 21 125556777753 2
Q ss_pred CCCEEEEEEEcC-CCcccccc---CHHHHHHHHHHcCCEEEEEccccccccCCCCCCc--------cCCcEEEeCCcccc
Q 001989 728 RDNLSTLMVTYP-STHGVYEE---GIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGY--------IGADVCHLNLHKTF 795 (985)
Q Consensus 728 ~~~t~~Vvv~~p-n~~G~i~~---di~eI~~la~~~galliVD~a~~~~~~~l~~pg~--------~g~Di~~~s~hK~l 795 (985)
++++++|+++-. ...|++.+ -+++|.++|+++|+++|+|+++. + +.+.+. .-+|++++ .|.+
T Consensus 196 ~~~iaavi~EPv~g~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~t-G---~gr~G~~~a~~~~gv~pDi~tl--sK~l 269 (425)
T PRK07495 196 PQRVAAIIIEPVQGEGGFYPAPAAFMKALRELCDQHGILLIADEVQT-G---FARTGKLFAMEHHEVAADLTTM--AKGL 269 (425)
T ss_pred CCceEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhh-c---CCcCCCceeecccCCCCCEEee--hhhh
Confidence 356888887642 23565531 48999999999999999999874 2 323322 23687765 3776
Q ss_pred cccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHHHHHHHHHH
Q 001989 796 CIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIA 875 (985)
Q Consensus 796 ~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl~~~~~~~ 875 (985)
+ ||-.+|++++++++.+.+.... ..+++.|+++.++++.+.+..+..+++. ++.
T Consensus 270 ~-----~G~pigav~~~~~i~~~~~~~~------------------~~~T~~~~pl~~aaa~a~l~~l~~~~l~---~~~ 323 (425)
T PRK07495 270 A-----GGFPLAAVTGRAEIMDAPGPGG------------------LGGTYGGNPLGIAAAHAVLDVIEEEDLC---ERA 323 (425)
T ss_pred c-----CCccceEEEEcHHHHhccCCCC------------------cCCCCCCCHHHHHHHHHHHHHHHhchHH---HHH
Confidence 4 3344777888877765543210 0112344666677777888888665444 456
Q ss_pred HHHHHHHHHHhhcc---CCee--ecCCCCceeeEEEEEecCccc-cCC-CCHHHHHHHHHHCCCccCCCCCCCCCEEEEe
Q 001989 876 ILNANYMAKRLEKH---YPIL--FRGVNGTVAHEFIVDLRGLKN-TAG-IEPEDVAKRLMDYGFHGPTMSWPVPGTLMIE 948 (985)
Q Consensus 876 ~~~a~~l~~~L~~g---~~l~--~~~~~~~~~~~~iv~~~~~~~-~~g-~~~~~v~~~L~~~Gi~~~~~~~p~~~~lris 948 (985)
.++.++|+++|++. +..+ +.+. + .+ +.+.+..-.. ... .....+.+.+.++|+++.... +..+.+|+.
T Consensus 324 ~~~g~~l~~~L~~l~~~~~~i~~vrG~-G-l~--~~iel~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~~g-~~~~~~r~~ 398 (425)
T PRK07495 324 NQLGNRLKQRLASLRETVPEIADIRGP-G-FM--NAVEFNDADSGLPSAEFANRVRLKALEKGLILLTCG-VHGNVIRFL 398 (425)
T ss_pred HHHHHHHHHHHHHHHhhCCCeeeeecC-c-eE--EEEEEecCCCCCccHHHHHHHHHHHHHCCeEEeecC-CCCCEEEEe
Confidence 67778888887652 2221 1121 2 22 2233321000 000 013467788889999875432 124799999
Q ss_pred ccCCCCHHHHHHHHccCChhHHHHhhcc
Q 001989 949 PTESESKSWTGIVMLSSPSEKKLHRLKM 976 (985)
Q Consensus 949 ~t~~~t~eeId~~~~~~~l~~~~~~~~~ 976 (985)
|+...|++|||+ ++++|++++.++++
T Consensus 399 Ppl~it~~~id~--~~~~l~~~l~~~~~ 424 (425)
T PRK07495 399 APITIQDDVFAE--ALDILEASILEASA 424 (425)
T ss_pred CCCccCHHHHHH--HHHHHHHHHHHHhc
Confidence 999999999999 88999999987764
|
|
| >TIGR03537 DapC succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.4e-15 Score=171.65 Aligned_cols=289 Identities=16% Similarity=0.166 Sum_probs=180.0
Q ss_pred hhHHHHHHHHHHHHHHHhCC--Ccc-ceecCcHHH-HHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcE
Q 001989 628 QGYQEMFNNLGEWLCTITGF--DSF-SLQPNAGAA-GEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMK 703 (985)
Q Consensus 628 ~G~~~~~~e~~~~la~l~G~--~~~-~~~~~sGa~-a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~ 703 (985)
+|..++.+.+.+++.+..|. +.. ++..++|++ +. ..++..+. ..| .++++|+++.+.+..+...++..|++
T Consensus 36 ~G~~~lr~aia~~~~~~~g~~~~~~~~Iiit~Gs~~ai---~~~~~~~~-~~g-~~~d~Vl~~~p~y~~~~~~~~~~g~~ 110 (350)
T TIGR03537 36 LGTKALREAISGWFERRFGVKLDPDAQVLPSAGSKEAI---FHFPLVFI-DPE-EDRRRVIFGTPGYPVYERGALFAGGE 110 (350)
T ss_pred CCCHHHHHHHHHHHHHHhCCCCCCCCcEEEcCChHHHH---HHHHHHHc-CCC-CCCceEEEcCCCCcchHHHHHhcCCE
Confidence 56666666666676666674 343 566666654 33 33333221 111 12379999998888888888999999
Q ss_pred EEEEcCCC-C-CCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccC---HHHHHHHHHHcCCEEEEEcccccc-ccC-
Q 001989 704 IVSVGTDA-K-GNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEG---IDEICKIIHDNGGQVYMDGANMNA-QVG- 775 (985)
Q Consensus 704 vv~v~~d~-~-g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~d---i~eI~~la~~~galliVD~a~~~~-~~~- 775 (985)
++.++.++ + ..+|+++++++++ ++++++++++| |++|.+. + +++|.++|+++|+++++|+++... ...
T Consensus 111 ~~~v~~~~~~~~~~d~~~l~~~~~---~~~~~i~i~~p~NPtG~~~-~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~ 186 (350)
T TIGR03537 111 PTAVKLKKEDGFLLRLEKVEKSIL---EETKIVWINYPHNPTGATA-PRSYLKETIAMCREHGIILCSDECYTEIYFGEP 186 (350)
T ss_pred EEEcccCcccCCccCHHHHHHhhh---hccEEEEEeCCCCCcCccc-CHHHHHHHHHHHHHcCcEEEEeccccccccCCC
Confidence 99999863 3 4689999999997 68899999998 5799886 5 899999999999999999987421 111
Q ss_pred CCCCCccCC--cEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHH
Q 001989 776 LTSPGYIGA--DVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALIL 853 (985)
Q Consensus 776 l~~pg~~g~--Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~ 853 (985)
......++. .+++.|++|+++.| |.++|++++++++...+.... ...+++++...+
T Consensus 187 ~~~~~~~~~~~~i~~~s~SK~~g~~----GlRiG~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~q---- 244 (350)
T TIGR03537 187 PHSALEVGIENVLAFHSLSKRSGMT----GYRSGFVAGDEKLISFLRKLR--------------ANFGVASPDFVQ---- 244 (350)
T ss_pred CCchhhcCcCCEEEEeecccccCCc----cccceeeecCHHHHHHHHHHH--------------HhhccCCCHHHH----
Confidence 000111222 36677889988543 677999988766554432110 001112111111
Q ss_pred HHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCC
Q 001989 854 PISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGF 932 (985)
Q Consensus 854 ~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi 932 (985)
.++.+.+. ..+.+++..++..++.+.+.+.|++ ++++. .+.+.++ +.++++ .+.+..++++.|.++||
T Consensus 245 ~~~~~~l~--~~~~~~~~r~~l~~~~~~~~~~l~~~g~~~~--~~~g~~~--~~~~~~-----~~~~~~~l~~~L~~~gv 313 (350)
T TIGR03537 245 AAAKAAWS--DDNHVLERRKIFKRKRDLFIEFFNKVGLEYL--YPDATFY--LWVKVP-----SGIDAKDYALRLLENGI 313 (350)
T ss_pred HHHHHHhC--CcHHHHHHHHHHHHHHHHHHHHHHHCCCccc--CCCeEEE--EEEECC-----CCCCHHHHHHHHHHCCE
Confidence 11112221 2233445555567777788888876 44332 2222222 235554 13567899999999999
Q ss_pred ccCCC-CCC--CCCEEEEeccCCCCHHHHHH
Q 001989 933 HGPTM-SWP--VPGTLMIEPTESESKSWTGI 960 (985)
Q Consensus 933 ~~~~~-~~p--~~~~lris~t~~~t~eeId~ 960 (985)
.+... .|. ..+++||++. .+.+++++
T Consensus 314 ~v~~g~~f~~~~~~~~Ri~~~--~~~~~~~~ 342 (350)
T TIGR03537 314 VVAPGENFGSGEEGYVRVALV--PTLEECEE 342 (350)
T ss_pred EEcCchhhCCCCCCEEEEEec--CCHHHHHH
Confidence 87542 232 2478999974 56788777
|
Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade. |
| >PRK13580 serine hydroxymethyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=2e-15 Score=174.15 Aligned_cols=277 Identities=13% Similarity=0.078 Sum_probs=176.7
Q ss_pred HHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhh--------------------------cC--CCCEEEEcCCCC-
Q 001989 215 NFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQ--------------------------KG--KKKTFIIASNCH- 265 (985)
Q Consensus 215 e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~--------------------------~~--~g~~Vlv~~~~H- 265 (985)
.+.+.+.+|+|++.+|+-.++|..+ ..++.+|+.-. ++ +||+|+.-+..|
T Consensus 99 l~~~ra~~lf~a~~anvqp~Sg~~A-n~~v~~all~~~~~~p~~~~~g~~~~~~~~~~~~~~~~~~~~gd~i~~l~l~~G 177 (493)
T PRK13580 99 EAAEHAKELFGAEHAYVQPHSGADA-NLVAFWAILAHKVESPALEKLGAKTVNDLTEEDWEALRAELGNQRLLGMSLDSG 177 (493)
T ss_pred HHHHHHHHHhCCCcccccCCCcHHH-HHHHHHHHhcccccCcchhccccccccccchhhhhhhhccCCCCEEEeecCCCC
Confidence 3457788999999988877766544 44555554210 00 178988665443
Q ss_pred -------hhHHHHHHHhhcCCCeEE--EEeCchhhhc-cCCCEeEEEEEcCCCCeeeccHHHHHHHHHhCCcEEEEEecC
Q 001989 266 -------PQTIDICITRADGFDIKV--VVSDLKDIDY-KSGDVCGVLVQYPGTEGEVLDYGDFIKNAHANGVKVVMATDL 335 (985)
Q Consensus 266 -------~s~~~~~~~~a~~~gi~v--~~v~~~~l~~-l~~~t~~V~v~~pn~~G~v~di~~I~~~a~~~galliV~a~~ 335 (985)
+.+.......+..+|++- -.+|++++++ +.+++..|++.+.+.+|.+.|+++|.++||++|++++|| ..
T Consensus 178 GHlthg~~~n~~~~~~~~~~y~vd~~~g~iD~d~l~~~~~~~~plvii~g~S~~~~~~dl~~i~eia~~~gA~L~VD-~A 256 (493)
T PRK13580 178 GHLTHGFRPNISGKMFHQRSYGVDPDTGLLDYDEIAALAREFKPLILVAGYSAYPRRVNFAKLREIADEVGAVLMVD-MA 256 (493)
T ss_pred CeeecCcccchhhheeeeEecccCcccCccCHHHHHHHHhhcCCEEEEeCccccCCCcCHHHHHHHHHHcCCEEEEE-Cc
Confidence 222222111122334332 1245677777 778888888887544466789999999999999999994 34
Q ss_pred ccccCCCC---C----CcccceEEEecC-ccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccc
Q 001989 336 LALTILKP---P----GELGADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTR 407 (985)
Q Consensus 336 ~~lg~l~~---~----~~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tr 407 (985)
+++|++.- + ...++||+++++ |+|++ |..||+++++++.+++.- ..+ |.+
T Consensus 257 H~~Gligg~~~~~~~~~~~~~D~vtgT~hKaL~G------P~GG~I~~~~~l~~~L~~----------a~P-~i~----- 314 (493)
T PRK13580 257 HFAGLVAGKVFTGDEDPVPHADIVTTTTHKTLRG------PRGGLVLAKKEYADAVDK----------GCP-LVL----- 314 (493)
T ss_pred hhhceeccccchhhcCCCCCCcEEEeCChhhccC------CCeEEEEecHHHHHHHhh----------CCC-ccc-----
Confidence 56665431 1 123799999998 77754 445899999988776610 000 100
Q ss_pred cccccccccCCCccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcC-CCCcceEEEecCC--
Q 001989 408 EQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQG-LPFFDTVKVKCAD-- 484 (985)
Q Consensus 408 e~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~-~~~~~~~~~~~~~-- 484 (985)
+++.. +...+.+.++ ..+...+.++.+++..+++++|++.|.+.| ++++. ....+.+.+.+.+
T Consensus 315 --------gg~l~---p~iAA~avAl--~e~~~~ef~~y~~~l~~Na~~La~~L~~~G-~~vv~ggTdshIV~V~lg~~~ 380 (493)
T PRK13580 315 --------GGPLP---HVMAAKAVAL--AEARTPEFQKYAQQVVDNARALAEGFLKRG-ARLVTGGTDNHLVLIDVTSFG 380 (493)
T ss_pred --------CCCcc---HHHHHHHHHH--HHHhCccHHHHHHHHHHHHHHHHHHHHhcC-CCccCCCCCCCEEEEEeCCHH
Confidence 11111 2222222222 233233457789999999999999999998 88863 2233455565543
Q ss_pred --HHHHHHHHHHcCceeeee----------cCCeEEEEeccCC----CHHHHHHHHHHHhC
Q 001989 485 --AHAIASAAYKIEMNLRVV----------DSNTVTASFDETT----TLEDVDKLFIVFAG 529 (985)
Q Consensus 485 --~~~v~~~L~~~GI~~~~~----------~~~~lris~t~~~----t~edId~li~aL~~ 529 (985)
...+.+.|.+.||.+... ....||+++++.+ +++||+++++.|..
T Consensus 381 ~~g~~a~~~L~e~GI~vn~i~~Ptvp~g~~~~srLRIg~~A~ttrg~teedi~~iad~l~~ 441 (493)
T PRK13580 381 LTGRQAESALLDAGIVTNRNSIPSDPNGAWYTSGIRLGTPALTTLGMGSDEMDEVAELIVK 441 (493)
T ss_pred HHHHHHHHHHHHCCeEEccccCCCCCCCCCCCceEEeccchhhhcCCCHHHHHHHHHHHHH
Confidence 346778999999987432 1467999999944 69999999999974
|
|
| >TIGR03588 PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase | Back alignment and domain information |
|---|
Probab=99.70 E-value=3e-15 Score=172.78 Aligned_cols=306 Identities=14% Similarity=0.097 Sum_probs=186.7
Q ss_pred HHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcCCC-C
Q 001989 634 FNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDA-K 712 (985)
Q Consensus 634 ~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~d~-~ 712 (985)
..++++.+++++|.+.. +.+++|++|...++.++ +.++||+||++...|......+...|++++.+++++ +
T Consensus 31 ~~~le~~la~~~g~~~~-v~~~sgt~al~~~l~al-------~~~~Gd~Viv~~~~~~~~~~~~~~~G~~~~~~~~~~~~ 102 (380)
T TIGR03588 31 VPAFEEALAEYVGAKYA-VAFNSATSALHIACLAL-------GVGPGDRVWTTPITFVATANCALYCGAKVDFVDIDPDT 102 (380)
T ss_pred HHHHHHHHHHHHCCCeE-EEEcCHHHHHHHHHHHc-------CCCCCCEEEeCCcchHHHHHHHHHcCCEEEEEecCCCc
Confidence 34788899999998764 44567777664444332 124789999998877666666778999999999965 5
Q ss_pred CCCCHHHHHHHHHhcC-CCEEEEEEEcCCCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCccCC----cEE
Q 001989 713 GNINIEELRKAAEANR-DNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIGA----DVC 787 (985)
Q Consensus 713 g~iD~e~L~~~i~~~~-~~t~~Vvv~~pn~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~g~----Di~ 787 (985)
+.+|++++++++++.+ ++|++|+++++ +|... |+++|.++|+++|+++++|++|+.+.. + ....+|. |+.
T Consensus 103 ~~~d~~~l~~~i~~~~~~~t~~v~~~~~--~G~~~-~~~~i~~l~~~~~~~lI~D~a~a~g~~-~-~~~~~g~~~~~d~~ 177 (380)
T TIGR03588 103 GNIDEDALEKKLAAAKGKLPKAIVPVDF--AGKSV-DMQAIAALAKKHGLKIIEDASHALGAE-Y-GGKPVGNCRYADAT 177 (380)
T ss_pred CCcCHHHHHHHhhcccCCCceEEEEeCC--CCccC-CHHHHHHHHHHcCCEEEEECCCcccCc-c-CCEeCCCccccceE
Confidence 7899999999997321 36888888764 68877 899999999999999999999975432 2 1122334 999
Q ss_pred EeCCc--ccccccCCCCCCceEEEEEc-ccccCcCCC-CccccCCCC---C-----CCCCCCCCCCCCCcchhhhHHHHH
Q 001989 788 HLNLH--KTFCIPHGGGGPGMGPIGVK-KHLAPFLPS-HPVVSTGGI---P-----APEKSQPLGTIAAAPWGSALILPI 855 (985)
Q Consensus 788 ~~s~h--K~l~~p~g~GGPg~G~i~~~-~~l~~~lp~-~~~g~~~~~---~-----~~~~~~~~~~i~s~~~g~~~~~~~ 855 (985)
++|+| |+++. +.+|+++.+ +++.+.+.. +..|...+. . .+..+... +..++.-....++.
T Consensus 178 ~~S~~~~K~~~~------~~GG~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~--~g~n~~m~~l~aa~ 249 (380)
T TIGR03588 178 VFSFHPVKIITT------AEGGAVTTNDEELAERMRLLRSHGITKDPLLFEKQDEGPWYYEQQE--LGFNYRMTDIQAAL 249 (380)
T ss_pred EEecCCCCcccc------cCceEEEECCHHHHHHHHHHHHCCCCCCcccccccccCcceeeeec--cccccCccHHHHHH
Confidence 99998 77742 234555554 444332210 000110000 0 00000000 00000001111111
Q ss_pred HHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhcc--CCeeecCCC-CceeeEEEEEecCccccCCCCHHHHHHHHHHCCC
Q 001989 856 SYTYIAMMGSKGLTEASKIAILNANYMAKRLEKH--YPILFRGVN-GTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGF 932 (985)
Q Consensus 856 a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~g--~~l~~~~~~-~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi 932 (985)
+.+-| +.+.+..++..++++++.+.|.+. +.+...... ....+.+.+.+.. ..+.+.+++.+.|.++||
T Consensus 250 g~~qL-----~~l~~~~~~r~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~---~~~~~r~~l~~~L~~~gI 321 (380)
T TIGR03588 250 GLSQL-----KKLDRFVAKRREIAARYDRLLKDLPYFTPLTIPLGSKSAWHLYPILLDQ---EFGCTRKEVFEALRAAGI 321 (380)
T ss_pred HHHHH-----HHHHHHHHHHHHHHHHHHHHhcCCCCccCCCCCCCCEeEEEEEEEEECC---cCCCCHHHHHHHHHHCCC
Confidence 11112 335666677788899999999863 222111111 1122334444431 024578899999999999
Q ss_pred ccCCCCCC---------------C-------CCEEEEeccCCCCHHHHHHHHccCChhHH
Q 001989 933 HGPTMSWP---------------V-------PGTLMIEPTESESKSWTGIVMLSSPSEKK 970 (985)
Q Consensus 933 ~~~~~~~p---------------~-------~~~lris~t~~~t~eeId~~~~~~~l~~~ 970 (985)
.+.....| . ...+++.++...|++||++ .+++++++
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~p~a~~~~~~~l~lP~~~~l~~~dv~~--i~~~l~~~ 379 (380)
T TIGR03588 322 GVQVHYIPVHLQPYYRQGFGDGDLPSAENFYLAEISLPLHPALTLEQQQR--VVETLRKV 379 (380)
T ss_pred CcccCCcccccChhhhccCCcCCCcHHHHHHhceEEcCCCCCCCHHHHHH--HHHHHHHh
Confidence 76421111 1 2568888888899999999 77777765
|
This family of enzymes are aminotransferases of the pfam01041 family involved in the biosynthesis of pseudaminic acid. They convert UDP-4-keto-6-deoxy-N-acetylglucosamine into UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic acid has a role in surface polysaccharide in Pseudomonas as well as in the modification of flagellin in Campylobacter and Helicobacter species. |
| >PRK08064 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.8e-15 Score=173.05 Aligned_cols=279 Identities=17% Similarity=0.184 Sum_probs=179.3
Q ss_pred HHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccH----HHHHHCCcEEEEEcC
Q 001989 634 FNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNP----ATAAMCGMKIVSVGT 709 (985)
Q Consensus 634 ~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~----~~a~~~G~~vv~v~~ 709 (985)
..++++.++++.|.+. .+.+++|+.++.+++. .. .++|+||+++..|+... ..++..|++++.++.
T Consensus 56 ~~~le~~lA~l~g~~~-~v~~~sG~~ai~~~l~----~l-----~~Gd~Vlv~~~~y~~~~~~~~~~~~~~G~~v~~v~~ 125 (390)
T PRK08064 56 REALEDIIAELEGGTK-GFAFASGMAAISTAFL----LL-----SKGDHVLISEDVYGGTYRMITEVLSRFGIEHTFVDM 125 (390)
T ss_pred HHHHHHHHHHHhCCCC-eEEECCHHHHHHHHHH----Hh-----CCCCEEEEccCccchHHHHHHHHHHHcCCEEEEECC
Confidence 4578899999999875 4556788776643332 11 36789999888776433 224568999999987
Q ss_pred CCCCCCCHHHHHHHHHhcCCCEEEEEEEcCC-CccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCccCCcEEE
Q 001989 710 DAKGNINIEELRKAAEANRDNLSTLMVTYPS-THGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIGADVCH 788 (985)
Q Consensus 710 d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~pn-~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~g~Di~~ 788 (985)
+ |+++++++++ ++|++|++++|+ ++|.+. |+++|+++||++|++++||+++..+. ...|.++|+|+++
T Consensus 126 ~-----d~~~l~~~l~---~~tklV~l~~p~NptG~~~-dl~~I~~la~~~g~~vvvD~a~~~~~--~~~~~~~g~Divv 194 (390)
T PRK08064 126 T-----NLEEVAQNIK---PNTKLFYVETPSNPLLKVT-DIRGVVKLAKAIGCLTFVDNTFLTPL--LQKPLDLGADVVL 194 (390)
T ss_pred C-----CHHHHHHhcC---CCceEEEEECCCCCCcEec-cHHHHHHHHHHcCCEEEEECCCCccc--ccCchhhCCcEEE
Confidence 4 7999999997 789999999995 799998 99999999999999999999875322 2345678999999
Q ss_pred eCCcccccccCCCCCCceEEEEEcc-cccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHH
Q 001989 789 LNLHKTFCIPHGGGGPGMGPIGVKK-HLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKG 867 (985)
Q Consensus 789 ~s~hK~l~~p~g~GGPg~G~i~~~~-~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eG 867 (985)
.|+||+++.+ +|-..|++++++ ++.+.+.... ...+...+ ...+|..+ .|.+.
T Consensus 195 ~S~tK~~~G~---~~~laG~~v~~~~~~~~~l~~~~-------------~~~g~~~~--------~~~a~l~~--~gl~t 248 (390)
T PRK08064 195 HSATKFLAGH---SDVLAGLAVVKDEELAQKLYFLQ-------------NSFGAVLG--------VQDCWLVL--RGLKT 248 (390)
T ss_pred eecceeccCC---ccceeEEEEeCCHHHHHHHHHHH-------------HhcCCCCC--------HHHHHHHH--cccCc
Confidence 9999998522 111257777763 4444332110 00111111 11233332 34444
Q ss_pred HHHHHHHHHHHHHHHHHHhhcc---CCeeecCCCC------------ceeeEEEEEecCccccCCCCHHHHHHHHHHCCC
Q 001989 868 LTEASKIAILNANYMAKRLEKH---YPILFRGVNG------------TVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGF 932 (985)
Q Consensus 868 l~~~~~~~~~~a~~l~~~L~~g---~~l~~~~~~~------------~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi 932 (985)
+..+.++..+++..+.+.|++. ..+.+++-.+ .....+.+.+. + .+++.+.+...++
T Consensus 249 l~~R~~~~~~~a~~la~~L~~~~~v~~v~yp~l~~~p~~~~~~~~~~g~gg~~sf~~~------~--~~~~~~f~~~l~l 320 (390)
T PRK08064 249 LHVRLEHSSETANKIALYLQEHPKVQNVYYPGLQTHLGFDIQQSQATSAGAVLSFTLQ------S--EEAVRQFVSHVKL 320 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCcceEECCCCCCCccHHHHHHhCCCcceEEEEEEC------C--HHHHHHHHHhCCc
Confidence 5677788889999999999863 2333432110 01112233332 2 3344444444455
Q ss_pred c-----cCC----C---------CCC--------C-CCEEEEeccCCCCHHHHHHHHccCChhH
Q 001989 933 H-----GPT----M---------SWP--------V-PGTLMIEPTESESKSWTGIVMLSSPSEK 969 (985)
Q Consensus 933 ~-----~~~----~---------~~p--------~-~~~lris~t~~~t~eeId~~~~~~~l~~ 969 (985)
. .++ + ..+ + ++.+|+|+...++++.|+. +.++|++
T Consensus 321 ~~~~~s~G~~~sl~~~~~~~~h~~~~~~~~~~~gi~~~liR~SvGle~~~dli~d--l~~Al~~ 382 (390)
T PRK08064 321 PVFAVSLGAVESILSYPAKMSHAAMPKEERDERGITDGLLRLSVGLENVDDLIAD--FEQALSY 382 (390)
T ss_pred ceEcccCCCCcceeECCcccccccCCHHHHHhcCCCCCeEEEEeccCCHHHHHHH--HHHHHHh
Confidence 2 111 0 011 2 4789999999999999999 5555554
|
|
| >cd00611 PSAT_like Phosphoserine aminotransferase (PSAT) family | Back alignment and domain information |
|---|
Probab=99.69 E-value=5.8e-16 Score=176.86 Aligned_cols=296 Identities=11% Similarity=0.028 Sum_probs=177.4
Q ss_pred hHHHHHHHHHHHHHHHhCCCc---cceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHH----HHHHCC
Q 001989 629 GYQEMFNNLGEWLCTITGFDS---FSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPA----TAAMCG 701 (985)
Q Consensus 629 G~~~~~~e~~~~la~l~G~~~---~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~----~a~~~G 701 (985)
-+.+.++++++.+++++|.+. +.|..+||+.+++++.. ++. .++ .++++|++. .+.. .++..|
T Consensus 41 ~~~~~~~~~r~~l~~l~~~~~~~~vvf~~gs~T~a~~~~~~---~l~-~~~-~~~~~i~~g-----~~~~~~~~~a~~~g 110 (355)
T cd00611 41 DFEAIVNEAESDLRELLNIPDNYKVLFLQGGATGQFAAVPL---NLL-GDK-GTADYVVTG-----AWSAKAAKEAKRYG 110 (355)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCceEEEEcCCchHHHHHHHH---hcC-CCC-CeEEEEECC-----HHHHHHHHHHHhcC
Confidence 345778899999999999743 23444667877754443 321 112 244545442 2222 457789
Q ss_pred cEEEEEcCCCCCCC-C-HHHHHHHHHhcCCCEEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCC
Q 001989 702 MKIVSVGTDAKGNI-N-IEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTS 778 (985)
Q Consensus 702 ~~vv~v~~d~~g~i-D-~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~ 778 (985)
++++.++++++|.. + ++..+..++ +++++|.+++. |.+|+.. .+ +++.+|++++||++|+++...+ +
T Consensus 111 ~~~~~~~~~~~g~~~~~~~~~~~~~~---~~~~lV~~~h~~t~tG~~~---~~---i~~~~g~~~~VDa~qs~g~~~i-d 180 (355)
T cd00611 111 GVVVIVAAKEEGKYTKIPDVETWDLA---PDAAYVHYCSNETIHGVEF---DE---VPDTGGVPLVADMSSNILSRPI-D 180 (355)
T ss_pred CCcEEEecccccCCCCCCCHhhcCCC---CCCCEEEEeCCcccccEEc---ce---ecccCCCeEEEEccccccCCCC-C
Confidence 99999998655433 4 333333344 78899988885 5689874 33 4455999999999997655443 3
Q ss_pred CCccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCC---CCCCCCCCCCCCCCcchhhhHHHHH
Q 001989 779 PGYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGI---PAPEKSQPLGTIAAAPWGSALILPI 855 (985)
Q Consensus 779 pg~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~---~~~~~~~~~~~i~s~~~g~~~~~~~ 855 (985)
..+++ +++.++||+| |.||+|++++++++.+.+++..... .+. .......+|+++. .+.+
T Consensus 181 v~~~~--~~~ss~~K~l------GP~G~g~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~Tpn~~--------~i~~ 243 (355)
T cd00611 181 VSKFG--VIYAGAQKNL------GPAGVTVVIVRKDLLGKARKITPSM-LNYKTHADNNSLYNTPPTF--------AIYM 243 (355)
T ss_pred HHHhC--EEEeeccccc------CCCceEEEEECHHHHhhcccCCCCc-ccHHHHHhcCCCCCCChHH--------HHHH
Confidence 44444 5667789987 3468999999987765544321100 000 0000011222221 1122
Q ss_pred HHHHHHHhcHH-HHHHHHHHHHHHHHHHHHHhhccCCee-ec-CCCCceeeEEEEEecCccccCCC-CHHHHHHHHHHCC
Q 001989 856 SYTYIAMMGSK-GLTEASKIAILNANYMAKRLEKHYPIL-FR-GVNGTVAHEFIVDLRGLKNTAGI-EPEDVAKRLMDYG 931 (985)
Q Consensus 856 a~a~l~~lg~e-Gl~~~~~~~~~~a~~l~~~L~~g~~l~-~~-~~~~~~~~~~iv~~~~~~~~~g~-~~~~v~~~L~~~G 931 (985)
..+.++.+..+ |++++.++..+++++++++|++..++. .. .+.......+.+.++ +. ...++.+.+.+.|
T Consensus 244 L~aal~~l~~~gg~e~i~~~~~~l~~~l~~~l~~~~gl~~~~~~~~~rs~~vvsf~~~------~~~l~~~~~~~~~r~G 317 (355)
T cd00611 244 MGLVLKWLKEQGGVEAMEKRNRQKAQLLYDTIDNSNGFYRGPVDKRARSRMNVPFRLG------KEELEKEFLKEAEAAG 317 (355)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhCccccccCCCHHHcCceEEEEEcC------ChhhhHHHHHHHHHCC
Confidence 23456666666 688888899999999999998732331 11 111111111333433 22 1245556677799
Q ss_pred CccCCCCCCCCCEEEEeccCCCCHHHHHHHHccCChhHH
Q 001989 932 FHGPTMSWPVPGTLMIEPTESESKSWTGIVMLSSPSEKK 970 (985)
Q Consensus 932 i~~~~~~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~ 970 (985)
+++..... ..+.+|+|+..++|+||||+ +++.|+++
T Consensus 318 ~~~~~~~~-~~g~vR~S~~~~nt~edi~~--l~~al~~~ 353 (355)
T cd00611 318 MIGLKGHR-SVGGIRASIYNALSLEGVQA--LADFMKEF 353 (355)
T ss_pred CcccCCCc-ccCeEEEEccCCCCHHHHHH--HHHHHHHH
Confidence 98543321 24899999999999999999 76777663
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major group in this CD corresponds to phosphoserine aminotransferase (PSAT). PSAT is active as a dimer and catalyzes the conversion of phosphohydroxypyruvate to phosphoserine. |
| >PTZ00125 ornithine aminotransferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=4.4e-15 Score=172.65 Aligned_cols=295 Identities=15% Similarity=0.188 Sum_probs=187.6
Q ss_pred HHHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHh-cCC-CCCCEEEE-cCCCCcccHHHHHHCCc-------
Q 001989 633 MFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKA-RGD-HHRNVCII-PVSAHGTNPATAAMCGM------- 702 (985)
Q Consensus 633 ~~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~-~g~-~~~~~IIv-~~~~Hg~~~~~a~~~G~------- 702 (985)
...++++.+++++|.+. .++++||++|+++++..++.+... +|. ..+++||+ ...+||.........+-
T Consensus 74 ~~~~~~~~l~~~~~~~~-~~~~~SGs~A~e~al~~~~~~~~~~~~~~~~~~~vl~~~~~~Hg~~~~~~~~~~~~~~~~~~ 152 (400)
T PTZ00125 74 VLGLAEKYITDLFGYDK-VLPMNSGAEAGETALKFARKWGYEVKGIPENQAKIIFCNGNFSGRTIGACSASTDPKCYNNF 152 (400)
T ss_pred HHHHHHHHHHhCCCCCE-EEEeCCcHHHHHHHHHHHHHHHHhccCCCCCCCeEEEECCCcCCccHHHHhhcCCcchhccC
Confidence 46688899999988764 467789999999999888765322 221 12355665 66788877655433221
Q ss_pred -----EEEEEcCCCCCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccC---HHHHHHHHHHcCCEEEEEccccccc
Q 001989 703 -----KIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEG---IDEICKIIHDNGGQVYMDGANMNAQ 773 (985)
Q Consensus 703 -----~vv~v~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~d---i~eI~~la~~~galliVD~a~~~~~ 773 (985)
.+..+++ .|+++|+++++ .+++++|+++.+ |.+|++.++ +++|.++|+++|+++++|+++. ++
T Consensus 153 ~~~~~~~~~~~~-----~d~~~le~~l~--~~~~~~v~~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~lli~Dev~~-g~ 224 (400)
T PTZ00125 153 GPFVPGFELVDY-----NDVEALEKLLQ--DPNVAAFIVEPIQGEAGVIVPDDGYLKQVYELCKKYNVLLIVDEIQT-GL 224 (400)
T ss_pred CCCCCCceEeCC-----CCHHHHHHHhC--CCCeEEEEEcCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEecccc-CC
Confidence 1222332 48999999995 257999988765 578988622 9999999999999999999873 33
Q ss_pred c--CCC-CC--CccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchh
Q 001989 774 V--GLT-SP--GYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWG 848 (985)
Q Consensus 774 ~--~l~-~p--g~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g 848 (985)
+ +-. .. ....+|+++++ |+|+ +|++++|++++++++.+.+.....+ . ++.+
T Consensus 225 g~~G~~~~~~~~~~~pd~~~~s--K~l~----~g~~~ig~v~~~~~~~~~~~~~~~~------------~------t~~~ 280 (400)
T PTZ00125 225 GRTGKLLAHDHEGVKPDIVLLG--KALS----GGLYPISAVLANDDVMLVIKPGEHG------------S------TYGG 280 (400)
T ss_pred CccchhhHHHhcCCCCCEEEEc--cccc----CCCcCcEEEEEcHHHHhhccCCCCC------------C------CCCc
Confidence 2 100 01 11236888764 8884 3445789999998876654321100 0 1112
Q ss_pred hhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhcc---CCee--ecCCCCceeeEEEEEecCccccCCCCHHHH
Q 001989 849 SALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKH---YPIL--FRGVNGTVAHEFIVDLRGLKNTAGIEPEDV 923 (985)
Q Consensus 849 ~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~g---~~l~--~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v 923 (985)
++..++++.+.++.+..+++. ++..++.++++++|++. .... ..+ .+. + +.+.++. ..+....++
T Consensus 281 ~~~~~~aa~~~l~~i~~~~~~---~~~~~~~~~l~~~l~~l~~~~~~~~~~~~-~g~-~--~~v~~~~---~~~~~~~~~ 350 (400)
T PTZ00125 281 NPLACAVAVEALEVLKEEKLA---ENAQRLGEVFRDGLKELLKKSPWVKEIRG-KGL-L--NAIVFDH---SDGVNAWDL 350 (400)
T ss_pred CHHHHHHHHHHHHHHHhcCHH---HHHHHHHHHHHHHHHHHHhcCCCeEEEec-ccE-E--EEEEEcc---CcchHHHHH
Confidence 333444455566666544443 34455677777777652 1211 111 121 2 2233321 012356789
Q ss_pred HHHHHHCCCccCCCCCCCCCEEEEeccCCCCHHHHHHHHccCChhHHHHhhc
Q 001989 924 AKRLMDYGFHGPTMSWPVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRLK 975 (985)
Q Consensus 924 ~~~L~~~Gi~~~~~~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~~ 975 (985)
+++|.++|+.+.... .+.+||+++..++++||++ +++.|.+++.+++
T Consensus 351 ~~~l~~~Gv~v~~~~---~~~lRi~~~~~~~~~~i~~--~l~~l~~~l~~~~ 397 (400)
T PTZ00125 351 CLKLKENGLLAKPTH---DNIIRFAPPLVITKEQLDQ--ALEIIKKVLKSFD 397 (400)
T ss_pred HHHHHHCCeEEeecC---CCEEEEECCccCCHHHHHH--HHHHHHHHHHHHh
Confidence 999999999875322 3789999999999999999 8899988887764
|
|
| >PRK06290 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=4.5e-15 Score=172.66 Aligned_cols=305 Identities=13% Similarity=0.111 Sum_probs=192.2
Q ss_pred hhHHHHHHHHHHHHHHHhCCC---cc-ceecCcHHH-HHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCc
Q 001989 628 QGYQEMFNNLGEWLCTITGFD---SF-SLQPNAGAA-GEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGM 702 (985)
Q Consensus 628 ~G~~~~~~e~~~~la~l~G~~---~~-~~~~~sGa~-a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~ 702 (985)
+|..++.+.+.+++.+.+|.+ .. ++..++|++ +.. .+++.+ ..+++.|+++.+.+..+...++..|+
T Consensus 81 ~G~~~lr~aia~~~~~~~g~~~~~~~~~I~it~Gs~~al~---~~~~~~-----~~~gd~Vlv~~P~y~~~~~~~~~~g~ 152 (410)
T PRK06290 81 NGIQEFKEAAARYMEKVFGVKDIDPVTEVIHSIGSKPALA---MLPSCF-----INPGDVTLMTVPGYPVTGTHTKYYGG 152 (410)
T ss_pred CCcHHHHHHHHHHHHHHcCCCcCCCcceEEEccCHHHHHH---HHHHHh-----CCCCCEEEEeCCCCccHHHHHHHcCC
Confidence 466666666666666666654 33 466666665 332 223322 14788999999877777777889999
Q ss_pred EEEEEcCCCC--CCCCHHHHHHHHHhcCCCEEEEEEEcC-CCcccccc--CHHHHHHHHHHcCCEEEEEccccccc-cC-
Q 001989 703 KIVSVGTDAK--GNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEE--GIDEICKIIHDNGGQVYMDGANMNAQ-VG- 775 (985)
Q Consensus 703 ~vv~v~~d~~--g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~--di~eI~~la~~~galliVD~a~~~~~-~~- 775 (985)
+++.+|.+++ +.+|++++++++. +++++|++++| |++|.+.+ .+++|.++|+++|+++++|.++.... .+
T Consensus 153 ~v~~v~~~~~~~~~~d~~~l~~~~~---~~~k~i~l~nP~NPTG~v~s~e~l~~l~~la~~~~~~iI~DEaY~~~~~~~~ 229 (410)
T PRK06290 153 EVYNLPLLEENNFLPDLDSIPKDIK---EKAKLLYLNYPNNPTGAVATKEFYEEVVDFAKENNIIVVQDAAYAALTFDGK 229 (410)
T ss_pred EEEEEecCCCcCCcCCHHHHHHhhc---ccceEEEEECCCCCCCcCCCHHHHHHHHHHHHHcCeEEEEecchhhceeCCC
Confidence 9999999753 5679999999887 68899999999 57999972 36888889999999999999874211 11
Q ss_pred CCC----CCccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhH
Q 001989 776 LTS----PGYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSAL 851 (985)
Q Consensus 776 l~~----pg~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~ 851 (985)
... ....+.+|++.|+.|.|++| |.++|++++++++...+.... ...+.+++ ..
T Consensus 230 ~~s~~~~~~~~~~~I~i~SfSK~~g~~----GlRiG~ii~~~~l~~~l~~~~--------------~~~~~~~~----~~ 287 (410)
T PRK06290 230 PLSFLSVPGAKEVGVEIHSLSKAYNMT----GWRLAFVVGNELIVKAFATVK--------------DNNDSGQF----IA 287 (410)
T ss_pred CcChhcCCCccccEEEEeechhhcCCc----hhheEeEEeCHHHHHHHHHHH--------------hccccCCc----HH
Confidence 000 11123568888999988654 678999998877654432110 00011110 01
Q ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCcc-cc-CCCCHHHHHHHHH
Q 001989 852 ILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLK-NT-AGIEPEDVAKRLM 928 (985)
Q Consensus 852 ~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~-~~-~g~~~~~v~~~L~ 928 (985)
...++..+|.. .+-+++..++..++++++.+.|++ ++.+ ..+.+.++ +.+.++.-. .. ...+..+++++|.
T Consensus 288 ~q~aa~~~l~~--~~~~~~~~~~~~~~~~~l~~~L~~~g~~~--~~p~g~f~--l~v~lp~~~~~~~~~~~~~~~~~~Ll 361 (410)
T PRK06290 288 IQKAGIYALDH--PEITEKIREKYSRRLDKLVKILNEVGFKA--EMPGGTFY--LYVKAPKGTKSGIKFENAEEFSQYLI 361 (410)
T ss_pred HHHHHHHHhhC--cHHHHHHHHHHHHHHHHHHHHHHhCCCee--cCCCeeeE--EEEECCCccccCCCCCCHHHHHHHHH
Confidence 11112222321 122344455567778889998887 3332 22222222 234554100 00 0025788999999
Q ss_pred HCCCccC--CCCCCCCCEEEEecc-CCCCHHHHHHHHccCChhHHHHhhc
Q 001989 929 DYGFHGP--TMSWPVPGTLMIEPT-ESESKSWTGIVMLSSPSEKKLHRLK 975 (985)
Q Consensus 929 ~~Gi~~~--~~~~p~~~~lris~t-~~~t~eeId~~~~~~~l~~~~~~~~ 975 (985)
++|+++. ...+ .+++||+++ ...++|+.++ ++++|++.+.++.
T Consensus 362 ~~~~v~~~p~~~~--~~~lRi~~~~~~~~~~~~~~--~~~~l~~~~~~~~ 407 (410)
T PRK06290 362 KEKLISTVPWDDA--GHFLRFSVTFEAKDEEEEDR--ILEEIKRRLSDVE 407 (410)
T ss_pred HhCCEEEECCccc--cCeEEEEEEcccccccchhH--HHHHHHHHHhhcc
Confidence 9876542 1122 378999996 4568889999 7888988887653
|
|
| >PRK07582 cystathionine gamma-lyase; Validated | Back alignment and domain information |
|---|
Probab=99.69 E-value=5.6e-15 Score=169.18 Aligned_cols=272 Identities=19% Similarity=0.129 Sum_probs=184.1
Q ss_pred HHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCchhhh-
Q 001989 214 LNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDLKDID- 292 (985)
Q Consensus 214 ~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~~~l~- 292 (985)
.++++.+|++.+ .++.++.+|++++.+++.++ + ++||+||++...|..+...++..++..|+++++++.++..
T Consensus 54 ~~Le~~lA~l~~---~~~v~~~sG~~Ai~~~l~al-l--~~Gd~Vl~~~~~y~~~~~~~~~~l~~~G~~v~~v~~~~~~~ 127 (366)
T PRK07582 54 RALEAALGELEG---AEALVFPSGMAAITAVLRAL-L--RPGDTVVVPADGYYQVRALAREYLAPLGVTVREAPTAGMAE 127 (366)
T ss_pred HHHHHHHHHHcC---CCEEEECCHHHHHHHHHHHh-c--CCCCEEEEeCCCcHhHHHHHHHHHhcCeEEEEEECCCChHH
Confidence 456789999993 34667788888777766654 3 3899999999888777666544445689999999875433
Q ss_pred ccCCCEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCCCCCcccceEEEecC-ccccccCCCCCCcE
Q 001989 293 YKSGDVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKPPGELGADIVVGSA-QRFGVPMGYGGPHA 370 (985)
Q Consensus 293 ~l~~~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~~~~~~GaDi~v~s~-k~lg~P~~~GGP~~ 370 (985)
.+.++|++|++.+| |++|.+.|+++|+++||++|++++||. .++.+....|.++|+|++++|+ |++++|- |--+
T Consensus 128 ~~~~~t~lV~le~p~NPtg~v~di~~I~~~a~~~g~~lvVD~-t~~~~~~~~p~~~g~Divv~S~sK~l~G~~---g~~~ 203 (366)
T PRK07582 128 AALAGADLVLAETPSNPGLDVCDLAALAAAAHAAGALLVVDN-TTATPLGQRPLELGADLVVASDTKALTGHS---DLLL 203 (366)
T ss_pred HhccCceEEEEECCCCCCCCccCHHHHHHHHHHcCCEEEEEC-CCCCccccCchhcCCcEEEecccccccCCC---CeeE
Confidence 24468999999998 688999999999999999999999953 3322223346679999999998 7765431 2225
Q ss_pred EEEEEc-hhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcchHHHHHHH
Q 001989 371 AFLATS-QEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQR 449 (985)
Q Consensus 371 G~l~~~-~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~ 449 (985)
|+++++ +++.+++.. .++..|. +.+++ .+ |+...|-+-++.+.++
T Consensus 204 G~v~~~~~~l~~~l~~-------------------------~~~~~g~----~~~~~---~a--~l~~r~l~tl~~R~~~ 249 (366)
T PRK07582 204 GYVAGRDPELMAAVER-------------------------WRLLAGA----IPGPF---EA--WLAHRSLGTLGLRFAR 249 (366)
T ss_pred EEEEcCcHHHHHHHHH-------------------------HHHHhCC----CCCHH---HH--HHHHhccccHHHHHHH
Confidence 888875 455444310 0011010 01122 11 2344444556777788
Q ss_pred HHHHHHHHHHHHhcCCCeEEcC------CC-----------CcceEEEecCCHHHHHHHHHHcCceee--------e---
Q 001989 450 VHGLAGTFALGLKKLGTVEVQG------LP-----------FFDTVKVKCADAHAIASAAYKIEMNLR--------V--- 501 (985)
Q Consensus 450 ~~~~a~~l~~~L~~~g~~~~~~------~~-----------~~~~~~~~~~~~~~v~~~L~~~GI~~~--------~--- 501 (985)
..+++..+++.|++...++-+. .| +...|+|.+++.+++.+.|...++... .
T Consensus 250 ~~~na~~la~~L~~~p~v~~v~yp~l~~~p~~~~~~~~~~~~gg~~s~~~~~~~~~~~~~~~l~~~~~~~s~G~~~sl~~ 329 (366)
T PRK07582 250 QCANALAVAELLAGHPAVRGVRYPGLPGDPAHEVAARQMRRFGGLVSFELADAAAAERFVAASRLVVAATSFGGVHTSAD 329 (366)
T ss_pred HHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHhhCCCCcceEEEEeCCHHHHHHHHHhCCcceecccCCCccchhh
Confidence 8899999999999885454321 12 223577777666666677766666431 1
Q ss_pred --------ecCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 502 --------VDSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 502 --------~~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
+.++.||+|++..++++.|+.|.++|..
T Consensus 330 ~~~~~~~~~~~~liR~svGlE~~~dli~dl~~al~~ 365 (366)
T PRK07582 330 RRARWGDAVPEGFVRLSCGIEDTDDLVADLERALDA 365 (366)
T ss_pred hHHHcCCCCCCCeEEEEeccCCHHHHHHHHHHHHhh
Confidence 1236799999999999999999999863
|
|
| >TIGR01141 hisC histidinol-phosphate aminotransferase | Back alignment and domain information |
|---|
Probab=99.69 E-value=6.4e-15 Score=167.83 Aligned_cols=299 Identities=16% Similarity=0.131 Sum_probs=197.9
Q ss_pred cCCCCCCCCCcHHHHHHHHhCCccccccCCChhhHhhhHHHHHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhh
Q 001989 171 IGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNI 250 (985)
Q Consensus 171 lG~g~y~~~~p~~v~~~i~~~~~~~t~~~pyq~e~sqg~l~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~ 250 (985)
++.|.++...|+.+.+++.+..+..+.|.+- ++ .++++.+|+++|+++.++.+++|++.++..++.++.
T Consensus 24 l~~~~~~~~~~~~~~~a~~~~~~~~~~y~~~-----~~-----~~lr~~ia~~~~~~~~~i~~~~G~~~~l~~~~~~l~- 92 (346)
T TIGR01141 24 LNSNENPFGPPPKAKEALRAEADKLHRYPDP-----DP-----AELKQALADYYGVDPEQILLGNGSDEIIELLIRAFL- 92 (346)
T ss_pred ccCCCCCCCCCHHHHHHHHHhHHHhhcCCCC-----CH-----HHHHHHHHHHhCcChHHEEEcCCHHHHHHHHHHHhc-
Confidence 3566667777777765555422222333211 11 468899999999988899999999988766665542
Q ss_pred hcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc--------hhhhc-cCCCEeEEEEEcC-CCCeeeccHHHHHH
Q 001989 251 QKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL--------KDIDY-KSGDVCGVLVQYP-GTEGEVLDYGDFIK 320 (985)
Q Consensus 251 ~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~--------~~l~~-l~~~t~~V~v~~p-n~~G~v~di~~I~~ 320 (985)
++||+|++++..|+.+...++ ..|++++.++. +++++ +++++++|++++| |.+|.+.|++++.+
T Consensus 93 --~~gd~v~~~~p~y~~~~~~~~----~~g~~~~~~~~~~~~~~d~~~l~~~~~~~~~~v~l~~p~NptG~~~~~~~~~~ 166 (346)
T TIGR01141 93 --EPGDAVLVPPPTYSMYEISAK----IHGAEVVKVPLDEDGQLDLEDILVAIDDKPKLVFLCSPNNPTGNLLSRSDIEA 166 (346)
T ss_pred --CCCCEEEEcCCCHHHHHHHHH----HcCCeEEEeccCCCCCCCHHHHHHhcCCCCCEEEEeCCCCCCCCCCCHHHHHH
Confidence 378999999988876655443 46888888754 34444 5778999999988 78999999999999
Q ss_pred HHHhC--CcEEEEEecCcc-ccCCCCC----CcccceEEEecC-ccccccCCCCCCcEEEEEEchhhHhcCCCceeeeee
Q 001989 321 NAHAN--GVKVVMATDLLA-LTILKPP----GELGADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSI 392 (985)
Q Consensus 321 ~a~~~--galliV~a~~~~-lg~l~~~----~~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~ 392 (985)
+++.+ |+++++|. ..+ +.....+ ...+-+|+++|. |+|+. +|..+|++++++++++++....
T Consensus 167 l~~~~~~~~~ii~D~-~y~~~~~~~~~~~~~~~~~~~i~~~S~sK~~g~----~G~r~G~~~~~~~~~~~~~~~~----- 236 (346)
T TIGR01141 167 VLERTPEDALVVVDE-AYGEFSGEPSTLPLLAEYPNLIVLRTLSKAFGL----AGLRIGYAIANAEIIDALNKVR----- 236 (346)
T ss_pred HHHhCCCCcEEEEEC-chhhhcCCccHHHHHhhCCCEEEEehhhHhhhc----hhhhceeeecCHHHHHHHHhcc-----
Confidence 99887 99999843 222 2111011 122335667776 87753 3456899999888777652100
Q ss_pred cCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCC
Q 001989 393 DSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGL 472 (985)
Q Consensus 393 d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~ 472 (985)
.+.+. ++....+..+ ++.. ...++++.++..++.+++++.|+++.|+++...
T Consensus 237 -----------------------~~~~~-~~~~~~~~~~--~l~~--~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~ 288 (346)
T TIGR01141 237 -----------------------APFNL-SRLAQAAAIA--ALRD--DDFIEKTVEEINAERERLYDGLKKLPGLEVYPS 288 (346)
T ss_pred -----------------------CCCCC-CHHHHHHHHH--HhCC--HHHHHHHHHHHHHHHHHHHHHHHhcCCCEECCC
Confidence 00111 1111111111 1121 124778888889999999999998833876532
Q ss_pred CCcceEEEecCC-HHHHHHHHHHcCceeeeec-----CCeEEEEeccCCCHHHHHHHHHHHh
Q 001989 473 PFFDTVKVKCAD-AHAIASAAYKIEMNLRVVD-----SNTVTASFDETTTLEDVDKLFIVFA 528 (985)
Q Consensus 473 ~~~~~~~~~~~~-~~~v~~~L~~~GI~~~~~~-----~~~lris~t~~~t~edId~li~aL~ 528 (985)
...-+.+..+. ..++.++|.++||.+.... ++.+|+|++ |++|+++++++|+
T Consensus 289 -~g~~~~~~~~~~~~~~~~~L~~~gI~v~~g~~f~~~~~~iRls~~---~~~~i~~~~~~l~ 346 (346)
T TIGR01141 289 -DANFVLIRFPRDADALFEALLEKGIIVRDLNSYPGLPNCLRITVG---TREENDRFLAALR 346 (346)
T ss_pred -cCCEEEEecCCCHHHHHHHHHHCCeEEEeCCCcCCCCCeEEEecC---CHHHHHHHHHHhC
Confidence 12234455553 8889999999999875432 588999976 8999999999874
|
Histidinol-phosphate aminotransferase is a pyridoxal-phosphate dependent enzyme. |
| >PF01276 OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; InterPro: IPR000310 Pyridoxal-dependent decarboxylases are bacterial proteins acting on ornithine, lysine, arginine and related substrates [] | Back alignment and domain information |
|---|
Probab=99.69 E-value=7.5e-16 Score=174.74 Aligned_cols=286 Identities=20% Similarity=0.236 Sum_probs=177.5
Q ss_pred HHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcCCCC-
Q 001989 634 FNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAK- 712 (985)
Q Consensus 634 ~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~d~~- 712 (985)
+.|.|+.+|+++|.+...|..|+++.|+.++++++. +++|+||+++.+|-+....+.+.|+++++++...+
T Consensus 68 I~eAe~~aA~~fGAd~t~flvnGsT~g~~a~i~a~~--------~~gd~VLv~RN~HkSv~~alil~ga~Pvyi~p~~~~ 139 (417)
T PF01276_consen 68 IKEAEELAARAFGADKTFFLVNGSTSGNQAMIMALC--------RPGDKVLVDRNCHKSVYNALILSGAIPVYIPPEDNE 139 (417)
T ss_dssp HHHHHHHHHHHHTESEEEEESSHHHHHHHHHHHHHT--------TTTCEEEEETT--HHHHHHHHHHTEEEEEEEEEE-T
T ss_pred HHHHHHHHHHhcCCCeEEEEecCchHHHHHHHHHhc--------CCCCEEEEcCCcHHHHHHHHHHcCCeEEEecCCccc
Confidence 779999999999999988888888889988877664 47899999999999888888999999999977421
Q ss_pred ----CCCCH-----HHHHHHHHhcCCCEE---EEEEEcCCCccccccCHHHHHHHHHHcCCEEEEEccccccccCCC---
Q 001989 713 ----GNINI-----EELRKAAEANRDNLS---TLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLT--- 777 (985)
Q Consensus 713 ----g~iD~-----e~L~~~i~~~~~~t~---~Vvv~~pn~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~--- 777 (985)
+.+++ +.++++|+++ ++.+ +|++++|++.|++. |+++|+++||++|..|+||+||. ++..|.
T Consensus 140 ~gi~~~i~~~~~~~~~i~~~l~~~-p~~k~~~~vvlt~PTY~Gv~~-di~~I~~~~h~~~~~llvDEAhG-ah~~F~~lp 216 (417)
T PF01276_consen 140 YGIIGGISPDEFNEEDIEEALKEH-PDAKAPRLVVLTSPTYYGVCY-DIKEIAEICHKHGIPLLVDEAHG-AHFGFHPLP 216 (417)
T ss_dssp TS-BEEB-GGGGSHHHHHHHHHHC-TTCHCESEEEEESS-TTSEEE--HHHHHHHHCCTECEEEEE-TT--TTGGCSGGG
T ss_pred cCCccCCChhhhhHHHHHHHHHhC-ccccCceEEEEeCCCCCeEEE-CHHHHHHHhcccCCEEEEEcccc-ccccCCCCc
Confidence 34667 9999999876 4444 49999999999999 99999999999999999999984 333332
Q ss_pred -CCCccCCc-------EEEeCCcccccccCCCCCCceEEEEEcccc-cC--cCCCCccccCCCCCCCCCCCCCCCCCCcc
Q 001989 778 -SPGYIGAD-------VCHLNLHKTFCIPHGGGGPGMGPIGVKKHL-AP--FLPSHPVVSTGGIPAPEKSQPLGTIAAAP 846 (985)
Q Consensus 778 -~pg~~g~D-------i~~~s~hK~l~~p~g~GGPg~G~i~~~~~l-~~--~lp~~~~g~~~~~~~~~~~~~~~~i~s~~ 846 (985)
..-.+|+| +++.|.||+++.- -..++|-++... .. .+.. .+.. -..| |..
T Consensus 217 ~~a~~~gad~~~~~~~~vvqS~HKtL~al-----tQts~lh~~~~~~v~~~~~~~-~l~~---------~~TT----SPS 277 (417)
T PF01276_consen 217 RSALALGADRPNDPGIIVVQSTHKTLPAL-----TQTSMLHVKGDRIVDHERVNE-ALSM---------HQTT----SPS 277 (417)
T ss_dssp TTCSSTTSS-CTSBEEEEEEEHHHHSSS------TT-EEEEEETCCCTTHHHHHH-HHHH---------HS-S----S--
T ss_pred cchhhccCccccccceeeeechhhccccc-----ccceEEEecCCCcccHHHHHH-HHHH---------HcCC----ChH
Confidence 22457899 9999999998521 256777776543 21 1100 0000 0011 111
Q ss_pred hhhhHHHHHHHHHHHHh-cHHHHHHHHHHHHHHHHHHHHHhh---c--cCCeee----cCCC------------------
Q 001989 847 WGSALILPISYTYIAMM-GSKGLTEASKIAILNANYMAKRLE---K--HYPILF----RGVN------------------ 898 (985)
Q Consensus 847 ~g~~~~~~~a~a~l~~l-g~eGl~~~~~~~~~~a~~l~~~L~---~--g~~l~~----~~~~------------------ 898 (985)
|-..+.+-.|. ..+ +.+| ++..++..+.+..++++|+ + ++++.. .++.
T Consensus 278 Y~lmASlD~a~---~~m~~~~G-~~l~~~~i~~a~~~R~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~whgf~~~~~ 353 (417)
T PF01276_consen 278 YPLMASLDVAR---AQMEEEEG-RELLEEAIELAEEFRKKINRLNDIWGFKVLGPEDVGGEGCWDLDPGENWHGFEGLAD 353 (417)
T ss_dssp HHHHHHHHHHH---HHHSHHHH-HHHHHHHHHHHHHHHHHHHHHCCT-SSEESS-SEECTCCGCB--TT-TTT--TT--T
T ss_pred HHHHHHHHHHH---HHHhhhhh-HHHHHHHHHHHHHHHHHHHhcCCCceEecCCccccCCccccccCccccchhchhccc
Confidence 21222222222 333 3444 3456677888888999883 3 333321 1110
Q ss_pred Cce-e--eEEEEEecCc-----cccCCCCHHHHHHHHHHCCCccCCCCCCCCCEEEEeccCCCCHH
Q 001989 899 GTV-A--HEFIVDLRGL-----KNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKS 956 (985)
Q Consensus 899 ~~~-~--~~~iv~~~~~-----~~~~g~~~~~v~~~L~~~Gi~~~~~~~p~~~~lris~t~~~t~e 956 (985)
+.+ . .-+.+.++++ ..+.|+++..+.+.|.++||.+-... ...+.+-++.-.|++
T Consensus 354 ~~~~lDP~K~ti~~pG~~~~g~~~~~Gi~g~~~~~~L~~~~I~~Ek~d---~~~vL~l~t~G~t~~ 416 (417)
T PF01276_consen 354 DYYMLDPTKLTINTPGIDADGELSELGIPGYIVEKYLREHGIQVEKTD---LYNVLFLFTIGDTKE 416 (417)
T ss_dssp TSEEE-TTEEEEE-STBETTSSB-SS---HHHHHHHHHHTTEE-SEEE---SSEEEEE--TTS-HH
T ss_pred CccccCCcEEEEEccCcCcCCcccccCCCHHHHHHHHHHcCCEEEecc---CccEEEEecCCCCCC
Confidence 000 0 0133444321 02357889999999999999875433 256777777766654
|
One of the regions of sequence similarity contains a conserved lysine residue, which is the site of attachment of the pyridoxal-phosphate group.; GO: 0003824 catalytic activity; PDB: 1C4K_A 1ORD_A 2X3L_B 3Q16_C 3N75_A 2VYC_D. |
| >PRK14807 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=3e-15 Score=170.97 Aligned_cols=281 Identities=17% Similarity=0.172 Sum_probs=184.0
Q ss_pred HHHHHHHHHHhCCCccceecCcHHH-HHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcCCCCC
Q 001989 635 NNLGEWLCTITGFDSFSLQPNAGAA-GEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKG 713 (985)
Q Consensus 635 ~e~~~~la~l~G~~~~~~~~~sGa~-a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~d~~g 713 (985)
.++++.++++++.+...+..++|++ +. ..+++.+. .++|+|+++++.++.+...++..|++++.++.++++
T Consensus 62 ~~lr~~ia~~~~~~~~~i~it~G~~~~l---~~~~~~l~-----~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~ 133 (351)
T PRK14807 62 EKLREELARYCSVVPTNIFVGNGSDEII---HLIMLAFI-----NKGDVVIYPHPSFAMYSVYSKIAGAVEIPVKLKEDY 133 (351)
T ss_pred HHHHHHHHHHhCCCcccEEEecCHHHHH---HHHHHHhc-----CCCCEEEEeCCChHHHHHHHHHcCCeEEEeecCCCC
Confidence 4678889999998776665555654 33 22333321 478899998876665555678899999999998778
Q ss_pred CCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCC---CCccCCcEEEe
Q 001989 714 NINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTS---PGYIGADVCHL 789 (985)
Q Consensus 714 ~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~---pg~~g~Di~~~ 789 (985)
.+|+++++++++. .++++|++++| |++|.+. +.+++.++|++++.++++|+++.. ..+-.. .....--+++.
T Consensus 134 ~~d~~~l~~~~~~--~~~k~v~l~~p~NPtG~~~-~~~~l~~l~~~~~~~~ivDe~y~~-~~~~~~~~~~~~~~~vi~~~ 209 (351)
T PRK14807 134 TYDVGSFIKVIEK--YQPKLVFLCNPNNPTGSVI-EREDIIKIIEKSRGIVVVDEAYFE-FYGNTIVDVINEFENLIVLR 209 (351)
T ss_pred CCCHHHHHHHhhc--cCCCEEEEeCCCCCCCCCC-CHHHHHHHHHhCCCEEEEeCcchh-hcccchHHHhhhCCCEEEEe
Confidence 8999999999972 37899999999 5799998 899999999998899999998732 111000 11122347788
Q ss_pred CCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHHHH
Q 001989 790 NLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLT 869 (985)
Q Consensus 790 s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl~ 869 (985)
|++|+|++| |.++|+++.++++...+.... ...+++ ...+. ++..++. ...+.
T Consensus 210 S~SK~~~~~----GlRiG~~v~~~~~~~~~~~~~--------------~~~~~~--~~~q~----~~~~~l~---~~~~~ 262 (351)
T PRK14807 210 TLSKAFGLA----GLRVGYAVANENILKYLNLVK--------------SPYNIN--SLSQV----IALKVLR---TGVLK 262 (351)
T ss_pred cchHhcccc----hhceeeeecCHHHHHHHHHcc--------------CCCCcC--HHHHH----HHHHHHh---HHHHH
Confidence 889998654 788999998877655442110 001111 11111 1222332 22345
Q ss_pred HHHHHHHHHHHHHHHHhhccCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCC--CCCCCEEEE
Q 001989 870 EASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMS--WPVPGTLMI 947 (985)
Q Consensus 870 ~~~~~~~~~a~~l~~~L~~g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~--~p~~~~lri 947 (985)
+..+...++++++.+.|++..++.+.++.+. + +.+.++ +..++.+.|.++||.+.... ...++++||
T Consensus 263 ~~~~~~~~~r~~l~~~l~~~~g~~~~~~~~~-~--~~i~~~--------~~~~~~~~l~~~gV~v~~~~~~~~~~~~iRi 331 (351)
T PRK14807 263 ERVNYILNERERLIKELSKIPGIKVYPSKTN-F--ILVKFK--------DADYVYQGLLERGILVRDFSKVEGLEGALRI 331 (351)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCcEECcCCcc-E--EEEEcC--------CHHHHHHHHHHCCEEEEECCCCCCCCCeEEE
Confidence 5555566777788888865223322222222 2 335543 46789999999999875432 223578999
Q ss_pred eccCCCCHHHHHHHHccCChhHH
Q 001989 948 EPTESESKSWTGIVMLSSPSEKK 970 (985)
Q Consensus 948 s~t~~~t~eeId~~~~~~~l~~~ 970 (985)
++ .+.++.++ +++.|+++
T Consensus 332 s~---~~~~~~~~--l~~~l~~~ 349 (351)
T PRK14807 332 TV---SSCEANDY--LINGLKEL 349 (351)
T ss_pred Ec---CCHHHHHH--HHHHHHHh
Confidence 98 46888998 66777664
|
|
| >COG0079 HisC Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.5e-15 Score=169.93 Aligned_cols=287 Identities=17% Similarity=0.184 Sum_probs=193.0
Q ss_pred HHHHHHHHHHHhC-CCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcCCCC
Q 001989 634 FNNLGEWLCTITG-FDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAK 712 (985)
Q Consensus 634 ~~e~~~~la~l~G-~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~d~~ 712 (985)
..++++.+++.+| .+..++..+.|+... .-..++.+. .+||+|+++.+.++.+...++..|++++.+|.++
T Consensus 59 ~~~l~~a~a~~~~~~~~~~V~~gnGsde~--i~~l~~~~~-----~~gd~vl~~~Ptf~~Y~~~a~~~g~~~~~v~~~~- 130 (356)
T COG0079 59 YRELRAALAEYYGVVDPENVLVGNGSDEL--IELLVRAFV-----EPGDTVLIPEPTFSMYEIAAQLAGAEVVKVPLKE- 130 (356)
T ss_pred HHHHHHHHHHHhCCCCcceEEEcCChHHH--HHHHHHHhh-----cCCCEEEEcCCChHHHHHHHHhcCCeEEEecccc-
Confidence 3477889999999 665666655566522 233344442 4678999998888888888999999999999977
Q ss_pred CCCCHHHHHHHHHhcCCCEEEEEEEcCC-CccccccCHHHHHHHHHHc--CCEEEEEccccccccCCCC-C-CccCCcEE
Q 001989 713 GNINIEELRKAAEANRDNLSTLMVTYPS-THGVYEEGIDEICKIIHDN--GGQVYMDGANMNAQVGLTS-P-GYIGADVC 787 (985)
Q Consensus 713 g~iD~e~L~~~i~~~~~~t~~Vvv~~pn-~~G~i~~di~eI~~la~~~--galliVD~a~~~~~~~l~~-p-g~~g~Di~ 787 (985)
+..|++++.+.++ +++++|++++|| +||.+- +.++|.+++... +++|+||+|+..- ++-.. + -....+++
T Consensus 131 ~~~d~~~~~~~~~---~~~~lv~i~nPNNPTG~~~-~~~~l~~l~~~~~~~~~vVvDEAY~eF-~~~~~~~l~~~~~nli 205 (356)
T COG0079 131 FRLDLDAILAAIR---DKTKLVFLCNPNNPTGTLL-PREELRALLEALPEGGLVVIDEAYIEF-SPESSLELLKYPPNLI 205 (356)
T ss_pred cccCHHHHHHhhh---cCCCEEEEeCCCCCCCCCC-CHHHHHHHHHhCCCCcEEEEeCchhhc-CCchhhhhccCCCCEE
Confidence 9999999999998 689999999995 799997 677777777654 8899999987321 11000 0 01223366
Q ss_pred EeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHH
Q 001989 788 HLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKG 867 (985)
Q Consensus 788 ~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eG 867 (985)
+. +||++.||..|-++|+++.++++...+... +...++++ .+..++.+.+..- +-
T Consensus 206 vl---RTfSKa~gLAGlRlGy~ia~~~~i~~l~~v--------------r~p~~v~~------~a~~aa~aal~~~--~~ 260 (356)
T COG0079 206 VL---RTFSKAFGLAGLRVGYAIANPELIAALNKV--------------RPPFNVSS------PALAAAIAALRDA--DY 260 (356)
T ss_pred EE---EecHHhhhcchhceeeccCCHHHHHHHHHh--------------cCCCCCCH------HHHHHHHHHcccH--HH
Confidence 55 556666667789999999888877655311 01113331 1122222322221 34
Q ss_pred HHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCCC-C-CCCE
Q 001989 868 LTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSW-P-VPGT 944 (985)
Q Consensus 868 l~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~~-p-~~~~ 944 (985)
+++..+++.+.+.++.+.|++ ++.-+++.. ..| +.++++ .+. ...+.+.|.++||.+..+.. + .+++
T Consensus 261 ~~~~~~~~~~~r~rl~~~l~~~~~~~v~pS~--aNF--vlv~~~-----~~~-~~~l~~~L~~~giivR~~~~~~~~~~~ 330 (356)
T COG0079 261 LEESVERIREERERLYAALKALGLFGVFPSQ--ANF--VLVRVP-----DAE-AAALAEALLKKGILVRDCSSVGLLPGY 330 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCeecCCC--CcE--EEEECC-----Ccc-HHHHHHHHHHCCEEEEeCCCCCCCCCe
Confidence 556666677888899999986 322123221 122 345554 123 56899999999999876532 2 3579
Q ss_pred EEEeccCCCCHHHHHHHHccCChhHHHHh
Q 001989 945 LMIEPTESESKSWTGIVMLSSPSEKKLHR 973 (985)
Q Consensus 945 lris~t~~~t~eeId~~~~~~~l~~~~~~ 973 (985)
+||++ .|.||.++ ++++|++++..
T Consensus 331 lRitv---gt~een~~--ll~AL~~~~~~ 354 (356)
T COG0079 331 LRITV---GTPEENDR--LLAALREVLKG 354 (356)
T ss_pred EEEEe---CCHHHHHH--HHHHHHHHHhc
Confidence 99999 89999999 77888877654
|
|
| >TIGR03799 NOD_PanD_pyr putative pyridoxal-dependent aspartate 1-decarboxylase | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.2e-14 Score=172.07 Aligned_cols=298 Identities=13% Similarity=0.081 Sum_probs=183.7
Q ss_pred hHhhhHHHHHHHHHHHHHHhcCCC-------------CcceeeccchHHHHHHHH-HHhhhhcC----------------
Q 001989 204 EIAQGRLESLLNFQTMIADLTGLP-------------MSNASLLDEGTAAAEAMA-MCNNIQKG---------------- 253 (985)
Q Consensus 204 e~sqg~l~~i~e~q~~ia~L~g~~-------------~~~~sl~~~~ta~~ea~~-~a~~~~~~---------------- 253 (985)
+.|....+...+.-.|++++++.. .+...+++|||.+.-.++ .|+....+
T Consensus 122 ~~spa~t~lE~~v~~wl~~l~~~~~~~~~~~~~~~~~~~~G~~tsGGS~ANl~Al~~AR~~~~~~~~~~~~~~~~gl~~~ 201 (522)
T TIGR03799 122 ETSKAFTPLERQVLGMMHHLVYGQDDDFYRKWMHSADHSLGAFCSGGTVANITALWVARNRLLKADGDFKGVAREGLFAA 201 (522)
T ss_pred ecCcchHHHHHHHHHHHHHHhccCcccchhhcccCCCCCCeEEcCchHHHHHHHHHHHHHHhccccccccccccccchhh
Confidence 345555566667778888888521 234667788876444333 34332100
Q ss_pred ------CCCEEEEcCCCChhHHHHHHHhhcCCCe-EEEEeCc--------hhhhc-cC----CCEeEEEE--EcC-CCCe
Q 001989 254 ------KKKTFIIASNCHPQTIDICITRADGFDI-KVVVSDL--------KDIDY-KS----GDVCGVLV--QYP-GTEG 310 (985)
Q Consensus 254 ------~g~~Vlv~~~~H~s~~~~~~~~a~~~gi-~v~~v~~--------~~l~~-l~----~~t~~V~v--~~p-n~~G 310 (985)
++..|++++.+|.|+.+.++.+ +.|. +++.++. ++|++ +. .+++.++| +.. +.+|
T Consensus 202 ~~~~~~~~~~v~~S~~~H~S~~kaa~~l--glg~~~v~~vp~d~~g~~d~~~L~~~i~~~~~~g~~~~~vvataGtt~tG 279 (522)
T TIGR03799 202 LKHYGYDGLAILVSERGHYSLGKAADVL--GIGRDNLIAIKTDANNRIDVDALRDKCAELAEQNIKPLAIVGVAGTTETG 279 (522)
T ss_pred hhhccCCceEEEECCCchHHHHHHHHHc--CCCcccEEEEEeCCCCcCCHHHHHHHHHHHHHCCCCcEEEEEEecCcCCC
Confidence 2357999999999998887543 2221 5665544 34554 42 34444433 444 5799
Q ss_pred eeccHHHHHHHHHhCCcEEEEEecCccccCCCCC------Cc-ccceEEEecC-ccccccCCCCCCcEEEEEEch-hhHh
Q 001989 311 EVLDYGDFIKNAHANGVKVVMATDLLALTILKPP------GE-LGADIVVGSA-QRFGVPMGYGGPHAAFLATSQ-EYKR 381 (985)
Q Consensus 311 ~v~di~~I~~~a~~~galliV~a~~~~lg~l~~~------~~-~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~-~~~~ 381 (985)
.++||++|+++|+++|++++||+ .++.+.+..+ .. .+||.++.++ |++++|++ +|++++++ ++.+
T Consensus 280 aiDpl~eIa~i~~~~g~~lHVDa-A~gg~~~~~~~~r~~l~gle~aDSit~d~HK~l~~P~g-----~G~llvr~~~~~~ 353 (522)
T TIGR03799 280 NIDPLDEMADIAQELGCHFHVDA-AWGGATLLSNTYRHLLKGIERADSVTIDAHKQLYVPMG-----AGMVLFKDPALMS 353 (522)
T ss_pred CcCCHHHHHHHHHHcCCeEEEEc-hhhhHHHhCHHHHHHhcCchhCCEEEEChhhcCCcCcc-----cEEEEEeCHHHHH
Confidence 99999999999999999999954 2232222211 22 3899999999 55777754 67888875 4545
Q ss_pred cCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHH
Q 001989 382 MMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGL 461 (985)
Q Consensus 382 ~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L 461 (985)
.+... ..+-.. .+...+ .+.+.+-++++. ++ .+-++ +.++|.+|++++.+++.++++|+.+.|
T Consensus 354 ~~~~~-~~Yl~~-~~~~d~--------~~~~legsR~~~----al-~lw~a--L~~lG~~G~~~ii~~~~~la~~l~~~L 416 (522)
T TIGR03799 354 AIEHH-AEYILR-KGSKDL--------GSHTLEGSRPGM----AM-LVYAG--LHIIGRKGYELLIDQSIEKAKYFADLI 416 (522)
T ss_pred HhccC-cchhcC-CCCCcc--------ccceeecCcchH----HH-HHHHH--HHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 44321 000000 000000 011122222221 21 23333 488999999999999999999999999
Q ss_pred hcCCCeEEcCCCCcceEEEecC-C------------------------HHHHHHHHHHcCce-eeee--c----C----C
Q 001989 462 KKLGTVEVQGLPFFDTVKVKCA-D------------------------AHAIASAAYKIEMN-LRVV--D----S----N 505 (985)
Q Consensus 462 ~~~g~~~~~~~~~~~~~~~~~~-~------------------------~~~v~~~L~~~GI~-~~~~--~----~----~ 505 (985)
++..+++++.++.++.++|+.. . ...+.+++.+.|.. +... . . -
T Consensus 417 ~~~~~~el~~~p~l~iv~Fr~~p~~~~~~l~~~~~~~~~~~~~~~~~ln~~i~~~~~~~G~~~vs~t~l~~~~~~g~~~~ 496 (522)
T TIGR03799 417 QQQPDFELVTEPELCLLTYRYVPEEVQQALAKADEEQREKINELLDRLTKFIQKRQREAGKSFVSRTRLTPAQYDHQPTV 496 (522)
T ss_pred hhCCCeEEecCCCccEEEEEEeChhhcccccccchhhhhhHHHHHHHHHHHHHHHHHhcCCEEEEEEEecccccCCCCcE
Confidence 9985599998777777777631 0 23566666667763 3321 1 1 2
Q ss_pred eEEEEe-ccCCCHHHHHHHHHH
Q 001989 506 TVTASF-DETTTLEDVDKLFIV 526 (985)
Q Consensus 506 ~lris~-t~~~t~edId~li~a 526 (985)
.+|+++ .+.+|++||+.+++.
T Consensus 497 ~lR~~~~np~tt~~~i~~~l~~ 518 (522)
T TIGR03799 497 VFRVVLANPLTTHEILQDILDE 518 (522)
T ss_pred EEEEEecCCCCCHHHHHHHHHH
Confidence 489998 567889999988754
|
This enzyme is proposed here to be a form of aspartate 1-decarboxylase, pyridoxal-dependent, that represents a non-orthologous displacement to the more widely distributed pyruvoyl-dependent form (TIGR00223). Aspartate 1-decarboxylase makes beta-alanine, used usually in pathothenate biosynthesis, by decarboxylation from asparatate. A number of species with the PanB and PanC enzymes, however, lack PanD. This protein family occurs in a number of Proteobacteria that lack PanD. This enzyme family appears to be a pyridoxal-dependent enzyme (see pfam00282). The family was identified by Partial Phylogenetic Profiling; members in Geobacter sulfurreducens, G. metallireducens, and Pseudoalteromonas atlantica are clustered with the genes for PanB and PanC. We suggest the gene symbol panP (panthothenate biosynthesis enzyme, Pyridoxal-dependent). |
| >PRK07505 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.8e-15 Score=176.06 Aligned_cols=292 Identities=15% Similarity=0.125 Sum_probs=172.1
Q ss_pred HHHHHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHH--HHHCCcEEEEEc
Q 001989 631 QEMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPAT--AAMCGMKIVSVG 708 (985)
Q Consensus 631 ~~~~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~--a~~~G~~vv~v~ 708 (985)
.+...++++.+++++|. ..++.+||++|+++++..++... ..+ .+++.|+....+|++.... ....+.+++.+|
T Consensus 90 ~~~~~~l~~~la~~~~~--~~~~~~sG~~a~~~ai~~~~~~~-~~~-~~~~vi~~~~~~H~s~~~~~~~~~~~~~v~~~~ 165 (402)
T PRK07505 90 SQILKDLEEALSELFGA--SVLTFTSCSAAHLGILPLLASGH-LTG-GVPPHMVFDKNAHASLNILKGICADETEVETID 165 (402)
T ss_pred hHHHHHHHHHHHHHhCC--CEEEECChHHHHHHHHHHHHhcc-cCC-CCCCEEEEchhhhHhHHhhhhhhhcCCeEEEeC
Confidence 45678999999999987 44666788888877776544211 011 1223334455788865322 122456888888
Q ss_pred CCCCCCCCHHHHHHHHHhcCCCEEEEEEEcCC-CccccccCHHHHHHHHHHcCCEEEEEcccccc-ccCCCCC---CccC
Q 001989 709 TDAKGNINIEELRKAAEANRDNLSTLMVTYPS-THGVYEEGIDEICKIIHDNGGQVYMDGANMNA-QVGLTSP---GYIG 783 (985)
Q Consensus 709 ~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~pn-~~G~i~~di~eI~~la~~~galliVD~a~~~~-~~~l~~p---g~~g 783 (985)
.+ |+++|+++++ ++++++++++|+ .+|.+. ++++|.++|+++|+++++|++|..+ .+..... ..++
T Consensus 166 ~~-----d~~~l~~~~~---~~~~~~vl~~p~~~~G~~~-~~~~i~~l~~~~~~~li~DEa~~~~~~g~~g~~~~~~~~~ 236 (402)
T PRK07505 166 HN-----DLDALEDICK---TNKTVAYVADGVYSMGGIA-PVKELLRLQEKYGLFLYIDDAHGLSIYGKNGEGYVRSELD 236 (402)
T ss_pred CC-----CHHHHHHHHh---cCCCEEEEEecccccCCcC-CHHHHHHHHHHcCCEEEEECcccccCcCCCCCchHHHHcC
Confidence 73 8999999987 566788888884 688887 7999999999999999999998421 1111110 0112
Q ss_pred ---Cc--EEEeCCcccccccCCCCCCceEEEEE-cccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHH
Q 001989 784 ---AD--VCHLNLHKTFCIPHGGGGPGMGPIGV-KKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISY 857 (985)
Q Consensus 784 ---~D--i~~~s~hK~l~~p~g~GGPg~G~i~~-~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~ 857 (985)
.| +++.++.|.|+. + +|++.+ ++++.+.+.....+.+ ..+++ ++..++++.
T Consensus 237 ~~~~d~~i~~~s~sK~~~~------~-Gg~~~~~~~~~~~~~~~~~~~~t----------~~~~~------~~~a~aa~~ 293 (402)
T PRK07505 237 YRLNERTIIAASLGKAFGA------S-GGVIMLGDAEQIELILRYAGPLA----------FSQSL------NVAALGAIL 293 (402)
T ss_pred CCCCCCeEEEEechhhhhc------c-CeEEEeCCHHHHHHHHHhCCCce----------eCCCC------CHHHHHHHH
Confidence 24 555677787742 2 266654 4444433321000000 00111 123334445
Q ss_pred HHHHHhcHHHHHHHHHHHHHHHHHHHHHhhccCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCC
Q 001989 858 TYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTM 937 (985)
Q Consensus 858 a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~ 937 (985)
+.+..+..+.+.+..++..++.+++.+.+.. . ..+ .......+.+. ......++.++|.++||.+...
T Consensus 294 a~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~--~--~~g---~~~~i~~~~~~-----~~~~~~~~~~~l~~~Gi~v~~~ 361 (402)
T PRK07505 294 ASAEIHLSEELDQLQQKLQNNIALFDSLIPT--E--QSG---SFLPIRLIYIG-----DEDTAIKAAKQLLDRGFYTSPV 361 (402)
T ss_pred HHHHHHhccCcHHHHHHHHHHHHHHHHHHHh--c--CCC---CCCCEEEEEeC-----CHHHHHHHHHHHHHCCCeEeee
Confidence 5555555555544444444443333322211 1 011 11111122222 0113578999999999998765
Q ss_pred CCC-C---CCEEEEeccCCCCHHHHHHHHccCChhHHHH
Q 001989 938 SWP-V---PGTLMIEPTESESKSWTGIVMLSSPSEKKLH 972 (985)
Q Consensus 938 ~~p-~---~~~lris~t~~~t~eeId~~~~~~~l~~~~~ 972 (985)
.+| + .+.|||+|+..+|+||+|+ +++.|++++.
T Consensus 362 ~~p~~~~~~~~lRi~~~~~~t~eei~~--~~~~l~~~l~ 398 (402)
T PRK07505 362 FFPVVAKGRAGLRIMFRASHTNDEIKR--LCSLLKEILD 398 (402)
T ss_pred cCCCCCCCCceEEEecCccCCHHHHHH--HHHHHHHHHH
Confidence 544 1 2689999999999999999 7888888764
|
|
| >TIGR00858 bioF 8-amino-7-oxononanoate synthase | Back alignment and domain information |
|---|
Probab=99.69 E-value=6.1e-15 Score=168.55 Aligned_cols=274 Identities=18% Similarity=0.189 Sum_probs=180.0
Q ss_pred hhHHHHHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEe
Q 001989 207 QGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVS 286 (985)
Q Consensus 207 qg~l~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v 286 (985)
.|......++++.+++++|.+. ++ ++.+|+.++.+++.++ . ++||+|++++..|+++...++. .|++++.+
T Consensus 57 ~g~~~~~~~l~~~la~~~~~~~-~i-~~~~G~~~~~~~l~~~-~--~~gd~v~~~~~~~~~~~~~~~~----~g~~~~~~ 127 (360)
T TIGR00858 57 SGNSPLHEELEEELAEWKGTEA-AL-LFSSGYLANVGVISAL-V--GKGDLILSDALNHASLIDGCRL----SGARVRRY 127 (360)
T ss_pred cCCcHHHHHHHHHHHHHhCCCC-EE-EECchHHHHHHHHHHh-C--CCCCEEEEEccccHHHHHHHHh----cCCceEEe
Confidence 4444556778899999999643 34 4445555555444333 2 3889999999999999887653 46666665
Q ss_pred C---chhhhc-cC----CCEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCCCC----------Ccc
Q 001989 287 D---LKDIDY-KS----GDVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKPP----------GEL 347 (985)
Q Consensus 287 ~---~~~l~~-l~----~~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~~~----------~~~ 347 (985)
+ ++++++ ++ +++++|++.++ |.+|.+.|+++|.++|+++|+++++| +..+.+.+... ...
T Consensus 128 ~~~d~~~l~~~~~~~~~~~~~~v~~~~~~~~~G~~~~~~~i~~l~~~~~~~li~D-e~~~~~~~~~~~~~~~~~~~~~~~ 206 (360)
T TIGR00858 128 RHNDVEHLERLLEKNRGERRKLIVTDGVFSMDGDIAPLPQLVALAERYGAWLMVD-DAHGTGVLGEDGRGTLEHFGLKPE 206 (360)
T ss_pred cCCCHHHHHHHHHHcccCCCeEEEEeCCccCCCCCcCHHHHHHHHHHcCcEEEEE-CcccccCcCCCCCchHHhcCCCcc
Confidence 4 456665 43 35777777776 67999999999999999999999994 33443322110 124
Q ss_pred cceEEEecC-ccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHH
Q 001989 348 GADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQAL 426 (985)
Q Consensus 348 GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l 426 (985)
+.||+++|. |.|+. +| |+++.++++.+.+... .+.+.. .+ -+++...
T Consensus 207 ~~~i~i~s~sK~~~~------~g-G~~~~~~~~~~~~~~~----------~~~~~~-------------~~--~~~~~~~ 254 (360)
T TIGR00858 207 PVDIQVGTLSKALGS------YG-AYVAGSQALIDYLINR----------ARTLIF-------------ST--ALPPAVA 254 (360)
T ss_pred CCcEEEEechhhhhc------cC-cEEEcCHHHHHHHHHh----------Ccccee-------------cC--CCCHHHH
Confidence 789999987 77753 23 6888887776654100 000000 00 0111223
Q ss_pred HHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCCCcceEEEecCC---HHHHHHHHHHcCceeeee-
Q 001989 427 LANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDTVKVKCAD---AHAIASAAYKIEMNLRVV- 502 (985)
Q Consensus 427 ~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~---~~~v~~~L~~~GI~~~~~- 502 (985)
.+..+++ .++. ..+++.++..++.+++.+.|+++| +++..+ ...-+.+..+. ..++.++|.++||.+...
T Consensus 255 ~a~~~al--~~~~--~~~~~~~~~~~~~~~l~~~L~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~gI~v~~~~ 328 (360)
T TIGR00858 255 AAALAAL--ELIQ--EEPWRREKLLALIARLRAGLEALG-FTLMPS-CTPIVPVIIGDNASALALAEELQQQGIFVGAIR 328 (360)
T ss_pred HHHHHHH--HHHh--hCHHHHHHHHHHHHHHHHHHHHcC-CccCCC-CCCEEEEEeCCHHHHHHHHHHHHHCCeeEeeeC
Confidence 3333333 2222 235677889999999999999987 776532 22234455543 678999999999988531
Q ss_pred ----c--CCeEEEEeccCCCHHHHHHHHHHHh
Q 001989 503 ----D--SNTVTASFDETTTLEDVDKLFIVFA 528 (985)
Q Consensus 503 ----~--~~~lris~t~~~t~edId~li~aL~ 528 (985)
. .+.+|++++.++|++|+++++++|+
T Consensus 329 ~~~~~~~~~~iRis~~~~~~~~~i~~~l~~l~ 360 (360)
T TIGR00858 329 PPTVPAGTSRLRLTLSAAHTPGDIDRLAEALK 360 (360)
T ss_pred CCCCCCCCceEEEEEcCCCCHHHHHHHHHhhC
Confidence 1 2589999999999999999999874
|
This model represents 8-amino-7-oxononanoate synthase, the BioF protein of biotin biosynthesis. This model is based on a careful phylogenetic analysis to separate members of this family from 2-amino-3-ketobutyrate and other related pyridoxal phosphate-dependent enzymes. In several species, including Staphylococcus and Coxiella, a candidate 8-amino-7-oxononanoate synthase is confirmed by location in the midst of a biotin biosynthesis operon but scores below the trusted cutoff of this model. |
| >PRK05769 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=9.5e-15 Score=171.03 Aligned_cols=324 Identities=15% Similarity=0.129 Sum_probs=194.5
Q ss_pred ccccccccCCCcccccccccccccccc-CCCCchhhhhhHHHHHHHHHHHHHHHhCCC--ccceecCcHHHHHHHHHHHH
Q 001989 592 IPLGSCTMKLNATTEMMPVTWPSFANI-HPFAPADQAQGYQEMFNNLGEWLCTITGFD--SFSLQPNAGAAGEYAGLMVI 668 (985)
Q Consensus 592 ~~lG~~t~~~~~~~~~~~~~~~~f~~~-~p~~p~e~~~G~~~~~~e~~~~la~l~G~~--~~~~~~~sGa~a~~a~l~ai 668 (985)
..||++++.+..+...+......+.+. ++ . +...++.+.|+++++.+ ...++.+||++|++++++++
T Consensus 66 ~~lGh~~p~v~~Ai~~ql~~~~~~~~~~~~-~---------~~~~~lAe~L~~~~p~~~~~~v~f~~SGsEA~e~AlklA 135 (441)
T PRK05769 66 TNVGHAHPKVVKAVKEQAEKFLHYSLTDFY-Y---------EPAVELAERLVEIAPGGFEKKVFFTNSGTESNEAAIKIA 135 (441)
T ss_pred cccCCCCHHHHHHHHHHHHhccCccCcccC-C---------HHHHHHHHHHHHhCCCCCCCEEEECCchHHHHHHHHHHH
Confidence 457888777766555443222222211 11 1 22347788888887522 24577899999999999999
Q ss_pred HHHHHhcCCCCCCEEEE-cCCCCcccHHHHHHCCc-------------EEEEEcCCCCCC-----C--------CHHHHH
Q 001989 669 RAYHKARGDHHRNVCII-PVSAHGTNPATAAMCGM-------------KIVSVGTDAKGN-----I--------NIEELR 721 (985)
Q Consensus 669 r~~~~~~g~~~~~~IIv-~~~~Hg~~~~~a~~~G~-------------~vv~v~~d~~g~-----i--------D~e~L~ 721 (985)
|.|. ++++||. ...+||.........|. .+..+|...... - +++.++
T Consensus 136 r~~t------gr~~Ii~~~~~yHG~t~~~ls~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le 209 (441)
T PRK05769 136 RYHT------GRKYIIAFLGAFHGRTYGSLSLTASKPVQRKGFFPLMPGVIHVPYPNPYRNPWGIENPEECGNAVLDFIE 209 (441)
T ss_pred HHHh------CCCeEEEECCCcCCccHHHHHhcCCCcccccCCCCCCCCeEEeCCCccccccccCCchHHHHHHHHHHHH
Confidence 8762 3556765 66899987655433211 233444321100 1 134466
Q ss_pred H-HHHh--cCCCEEEEEEEcC-CCccccccC----HHHHHHHHHHcCCEEEEEccccccccCCCCCCc------cC--Cc
Q 001989 722 K-AAEA--NRDNLSTLMVTYP-STHGVYEEG----IDEICKIIHDNGGQVYMDGANMNAQVGLTSPGY------IG--AD 785 (985)
Q Consensus 722 ~-~i~~--~~~~t~~Vvv~~p-n~~G~i~~d----i~eI~~la~~~galliVD~a~~~~~~~l~~pg~------~g--~D 785 (985)
+ .+++ ..+++++|+++.. +..|++. + +++|.++|+++|+++++|+++. + +.+.|. +| +|
T Consensus 210 ~~~~~~~~~~~~iaavi~Epv~g~~G~~~-~~~~~l~~l~~l~~~~g~lli~DEv~t-G---~gr~G~~~a~~~~gv~pD 284 (441)
T PRK05769 210 DYLFKKLVPPEEVAAIIVEPIQGEGGYVV-PPKNFFKELRKLADKYGILLIDDEVQT-G---MGRTGKMFAIEHFGVEPD 284 (441)
T ss_pred HHHHhhccCCCceEEEEECcccCCCCCcC-CCHHHHHHHHHHHHHcCCEEEEechhh-C---CCcccceehhhccCCCCC
Confidence 6 3332 2357888887653 3567766 5 9999999999999999999874 2 333332 22 68
Q ss_pred EEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcH
Q 001989 786 VCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGS 865 (985)
Q Consensus 786 i~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~ 865 (985)
+++++ |.++ ||..+|.+++++++....+.. ..+++.|+++.++++.+.|..+..
T Consensus 285 ivt~~--K~l~-----~G~p~gav~~~~~i~~~~~~~-------------------~~~T~~g~p~~~aaa~a~L~~l~~ 338 (441)
T PRK05769 285 IITLA--KAIA-----GGLPLGAVIGRAELMFLPPGS-------------------HANTFGGNPVAAAAALATLEELEE 338 (441)
T ss_pred EEEEc--cccc-----CCcccEEEEEehhhhhcCCCC-------------------CCCCCCcCHHHHHHHHHHHHHHHH
Confidence 88653 7663 334467777787766443211 011234466677777888887754
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhc-c--CCeeecCCCCceeeEEEEEecCc-cccCCCCHHHHHHHHHHCCCccCCCCCCC
Q 001989 866 KGLTEASKIAILNANYMAKRLEK-H--YPILFRGVNGTVAHEFIVDLRGL-KNTAGIEPEDVAKRLMDYGFHGPTMSWPV 941 (985)
Q Consensus 866 eGl~~~~~~~~~~a~~l~~~L~~-g--~~l~~~~~~~~~~~~~iv~~~~~-~~~~g~~~~~v~~~L~~~Gi~~~~~~~p~ 941 (985)
+ ..++..++.++|++.|++ . +.++........+ +.+.+..- ++........+.+.|.++|+++....
T Consensus 339 -~---~~~~~~~~g~~l~~~L~~l~~~~~~~~~vrg~G~~--~~i~~~~~~~~~~~~~~~~~~~~~~~~Gil~~~~~--- 409 (441)
T PRK05769 339 -G---LLENAQKLGEYLRKELKELKEKYEFIGDVRGLGLM--IGVELVKDRKEPDPKLRDKVLYEAFKRGLLLLGAG--- 409 (441)
T ss_pred -H---HHHHHHHHHHHHHHHHHHHHHhCCCeeeeecceEE--EEEEeccCCccccHHHHHHHHHHHHhCCcEEecCC---
Confidence 3 345677788899988875 1 3332110000112 22333100 00000113467788889999875332
Q ss_pred CCEEEEeccCCCCHHHHHHHHccCChhHHHHh
Q 001989 942 PGTLMIEPTESESKSWTGIVMLSSPSEKKLHR 973 (985)
Q Consensus 942 ~~~lris~t~~~t~eeId~~~~~~~l~~~~~~ 973 (985)
.+.+|++|+..+|++|||+ +++++++++.+
T Consensus 410 ~~~lr~~p~l~~t~~~id~--~~~~l~~~l~~ 439 (441)
T PRK05769 410 KSAIRIIPPLIITEEEADI--GLEILEEAIKE 439 (441)
T ss_pred CCEEEEeCCCCCCHHHHHH--HHHHHHHHHHH
Confidence 2689999999999999999 78888888764
|
|
| >PRK13238 tnaA tryptophanase/L-cysteine desulfhydrase, PLP-dependent; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.1e-14 Score=170.91 Aligned_cols=300 Identities=17% Similarity=0.137 Sum_probs=186.2
Q ss_pred HHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcCCC--
Q 001989 634 FNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDA-- 711 (985)
Q Consensus 634 ~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~d~-- 711 (985)
+.++++.+++++|.+.+ +.+++|++|+..+++++ .++|| ||++++.+.++.....+.|++++.+++++
T Consensus 80 ~~~Lreaia~~~~~~~v-v~t~ggt~A~~~~~~al--------l~pGD-Vii~~p~~~~~~~~i~~~G~~~v~v~~~~~~ 149 (460)
T PRK13238 80 YYRLEDAVKDIFGYPYT-IPTHQGRAAEQILFPVL--------IKKGD-VVPSNYHFDTTRAHIELNGATAVDLVIDEAL 149 (460)
T ss_pred HHHHHHHHHHHhCCCcE-EECCCHHHHHHHHHHHh--------CCCCC-EEccCCcccchHHHHHHcCCEEEEEeccccc
Confidence 44778899999998764 55567777775544433 14788 88888766666666788999999999853
Q ss_pred --------CCCCCHHHHHHHHHhcC-CCEEEEEEEcCC-Ccc-ccc--cCHHHHHHHHHHcCCEEEEEcccccc--cc--
Q 001989 712 --------KGNINIEELRKAAEANR-DNLSTLMVTYPS-THG-VYE--EGIDEICKIIHDNGGQVYMDGANMNA--QV-- 774 (985)
Q Consensus 712 --------~g~iD~e~L~~~i~~~~-~~t~~Vvv~~pn-~~G-~i~--~di~eI~~la~~~galliVD~a~~~~--~~-- 774 (985)
.|.+|+++|+++|+++. ++|++|++++|+ .+| .+- .++++|+++|+++|++|+.|+++... ..
T Consensus 150 ~~~~~~~f~g~id~e~Le~~i~~~~~~~tk~Ivl~~p~NptGG~v~s~~~l~~I~~ia~~~gi~li~Daa~~~e~a~f~~ 229 (460)
T PRK13238 150 DTGSRHPFKGNFDLEKLEALIEEVGAENVPFIVMTITNNSAGGQPVSMANLRAVYEIAKKYGIPVVIDAARFAENAYFIK 229 (460)
T ss_pred cccccccccCCcCHHHHHHHHhhcCCCceeEEEEecCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEECcchhhhhhhhh
Confidence 25599999999998432 479999999984 566 332 25789999999999999999988421 00
Q ss_pred ----CC--CCCCc------cCCcEEEeCCcccccccCCCCCCceEEEEEc-ccccCcCCCCccccCCCCCCCCCCCCCCC
Q 001989 775 ----GL--TSPGY------IGADVCHLNLHKTFCIPHGGGGPGMGPIGVK-KHLAPFLPSHPVVSTGGIPAPEKSQPLGT 841 (985)
Q Consensus 775 ----~l--~~pg~------~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~-~~l~~~lp~~~~g~~~~~~~~~~~~~~~~ 841 (985)
+. ....+ -..|++++|++|.+. +|.+|+++++ +++...+....+.. .+.
T Consensus 230 ~~e~g~~~~si~~i~~~~~s~~D~~~~Sg~K~g~------~~~GG~i~~~d~~l~~~~~~~~~~~------------~g~ 291 (460)
T PRK13238 230 QREPGYKDKSIKEIAREMFSYADGLTMSAKKDAM------VNIGGLLCFRDEDLFTECRTLCILY------------EGF 291 (460)
T ss_pred hccccccCCCHHHHhhhhcccCcEEEEecccCCC------CcceeEEEcChHHHHHHhhhccccc------------CCc
Confidence 11 01111 137999999999763 4555888888 46655543221100 000
Q ss_pred CCCcchhhhHHHHHHHH-HHH-HhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccc---c
Q 001989 842 IAAAPWGSALILPISYT-YIA-MMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKN---T 915 (985)
Q Consensus 842 i~s~~~g~~~~~~~a~a-~l~-~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~---~ 915 (985)
+ ++.|.+.....|.+ .+. .+..+ ..+...+++++|.+.|++ |+++.. +.+.+ -+.+++..+.. .
T Consensus 292 ~--t~~g~~~~~~~Ala~~l~e~~~~~----~~~~~~~~~~~l~~~L~~~G~~~~~--p~Gg~--~v~~d~~~~~~~~~~ 361 (460)
T PRK13238 292 P--TYGGLAGRDMEALAVGLYEGMDED----YLAYRIGQVEYLGEGLEEAGVPIQT--PAGGH--AVFVDAGKFLPHIPA 361 (460)
T ss_pred c--cccCcHHHHHHHHHhhHHHhhChH----HHHHHHHHHHHHHHHHHHCCCCeEc--cCCce--EEEEEchhcCCCCCC
Confidence 0 11122222222222 222 22222 222334467999999987 777653 22333 35666653310 0
Q ss_pred CCCCHHHHHHHHHH-CCCccCC---CCCC-----------CCCEEEEeccC-CCCHHHHHHHHccCChhHHHHh
Q 001989 916 AGIEPEDVAKRLMD-YGFHGPT---MSWP-----------VPGTLMIEPTE-SESKSWTGIVMLSSPSEKKLHR 973 (985)
Q Consensus 916 ~g~~~~~v~~~L~~-~Gi~~~~---~~~p-----------~~~~lris~t~-~~t~eeId~~~~~~~l~~~~~~ 973 (985)
.+....+++.+|.+ .||.+.. ...+ ..+.+|+++.- .-|.+.+|. .++.|+++.++
T Consensus 362 ~~~~~~~~a~~L~~e~GV~~~~~~~f~~~~~~~~~~~~~~~~~~~Rla~~rr~~~~~~~~~--~~~~l~~~~~~ 433 (460)
T PRK13238 362 EQFPAQALACELYLEAGIRGVEIGSLLLGRDPKTGEQLPAPAELLRLAIPRRVYTQSHMDY--VAEALKAVKEN 433 (460)
T ss_pred CCCchHHHHHHHHHHcCeeeecccceecccCCCCccccCCccceEEEecccccCCHHHHHH--HHHHHHHHHHh
Confidence 12245778888765 5887532 1111 13789999884 358999999 66777766643
|
|
| >PRK06082 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=6.8e-15 Score=172.84 Aligned_cols=325 Identities=17% Similarity=0.179 Sum_probs=198.5
Q ss_pred ccccccccCCCccccccccccccccccCCCCchhhhhhHHHHHHHHHHHHHHHhCCC-ccceecCcHHHHHHHHHHHHHH
Q 001989 592 IPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFD-SFSLQPNAGAAGEYAGLMVIRA 670 (985)
Q Consensus 592 ~~lG~~t~~~~~~~~~~~~~~~~f~~~~p~~p~e~~~G~~~~~~e~~~~la~l~G~~-~~~~~~~sGa~a~~a~l~air~ 670 (985)
..||++++.+..+...+........+.++ .+...++.+.|+++++.. ...++.+||++|++++++.+|.
T Consensus 83 ~~lGh~~p~v~~Ai~~ql~~~~~~~~~~~----------~~~~~~lae~L~~~~p~~~~~v~f~~sGseAve~AlklAr~ 152 (459)
T PRK06082 83 HQLGYGHPHVIEKVKEQMAKLPFSPRRFT----------NETAIECAEKLTEIAGGELNRVLFAPGGTSAIGMALKLARH 152 (459)
T ss_pred cccCCCCHHHHHHHHHHHHhCCCccCccC----------CHHHHHHHHHHHHhCCCCCCEEEECCCcHHHHHHHHHHHHH
Confidence 45788877776655444322211111111 123457888999998633 2457789999999999999887
Q ss_pred HHHhcCCCCCCEEEE-cCCCCcccHHHHHHCCc------------EEEEEcCCCC-----CCCC------HHHHHHHHHh
Q 001989 671 YHKARGDHHRNVCII-PVSAHGTNPATAAMCGM------------KIVSVGTDAK-----GNIN------IEELRKAAEA 726 (985)
Q Consensus 671 ~~~~~g~~~~~~IIv-~~~~Hg~~~~~a~~~G~------------~vv~v~~d~~-----g~iD------~e~L~~~i~~ 726 (985)
| .++.+||. ...+||.........|- .+..+|.... ...| +++|++.+++
T Consensus 153 ~------tgr~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ 226 (459)
T PRK06082 153 I------TGNFKVVSLWDSFHGASLDAISVGGEACFRQGMGPLMAGVERIPPAVSYRGAFPDADGSDVHYADYLEYVIEK 226 (459)
T ss_pred h------cCCCEEEEEeCCCcCccHHHHhhcCCcccccCCCCCCCCCEEeCCCcccccccCChhHHHHHHHHHHHHHHhc
Confidence 6 23456665 77899987554432221 1233432110 0111 3568888864
Q ss_pred cCCCEEEEEEEcCCCccccccC---HHHHHHHHHHcCCEEEEEccccccccCCCCCCcc--------CCcEEEeCCcccc
Q 001989 727 NRDNLSTLMVTYPSTHGVYEEG---IDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYI--------GADVCHLNLHKTF 795 (985)
Q Consensus 727 ~~~~t~~Vvv~~pn~~G~i~~d---i~eI~~la~~~galliVD~a~~~~~~~l~~pg~~--------g~Di~~~s~hK~l 795 (985)
. +++++|+++-....|.+.+| +++|.++|+++|+++|+|+++. |+++.|.+ .+|++++ .|.+
T Consensus 227 ~-~~vAavIvEPv~g~g~~~~~~~yl~~lr~lc~~~g~llI~DEV~t----G~GRtG~~fa~e~~gv~PDiv~~--gKgl 299 (459)
T PRK06082 227 E-GGIGAFIAEAVRNTDVQVPSKAYWKRVREICDKHNVLLIIDEIPN----GMGRTGEWFTHQAYGIEPDILCI--GKGL 299 (459)
T ss_pred C-CCEEEEEECCccCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhh----CCCccchhhHhHhhCCCCCEEEe--cccc
Confidence 3 57888888653223543334 8999999999999999998873 45555533 2799875 3766
Q ss_pred cccCCCCC-CceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHHHHHHHHH
Q 001989 796 CIPHGGGG-PGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKI 874 (985)
Q Consensus 796 ~~p~g~GG-Pg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl~~~~~~ 874 (985)
++|. | +|.+++++++....... . .. +++.|+++.++++.+.|..+..+++ .++
T Consensus 300 ----~gG~~P-~~av~~~~~i~~~~~~~----------------~-~~-~T~~gnpl~~aaa~a~L~~l~~~~l---~~~ 353 (459)
T PRK06082 300 ----GGGLVP-IAAMITKDKYNTAAQIS----------------L-GH-YTHEKSPLGCAAALATIEVIEQEGL---LEK 353 (459)
T ss_pred ----cCCCCc-ceEEEEcHHHHhhccCC----------------C-CC-CCCCcCHHHHHHHHHHHHHHHhcCH---HHH
Confidence 3443 5 45555566654332211 0 01 2355677888888888988866654 446
Q ss_pred HHHHHHHHHHHhhcc---CCee--ecCCCCceeeEEEEEecCccccCCC---CHHHHHHHHHHCCCccCCCCCCCCCEEE
Q 001989 875 AILNANYMAKRLEKH---YPIL--FRGVNGTVAHEFIVDLRGLKNTAGI---EPEDVAKRLMDYGFHGPTMSWPVPGTLM 946 (985)
Q Consensus 875 ~~~~a~~l~~~L~~g---~~l~--~~~~~~~~~~~~iv~~~~~~~~~g~---~~~~v~~~L~~~Gi~~~~~~~p~~~~lr 946 (985)
..++.++|+++|++. +.++ +.+. + .+ +.+.+..-...... ....+...+.++|+.+.... .+.+|
T Consensus 354 ~~~~g~~l~~~L~~l~~~~~~i~~vrG~-G-l~--~~ve~~~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~~~---~~~i~ 426 (459)
T PRK06082 354 VKADSQFMRERLLEMKAKYPLIGDVRGI-G-LL--WGVELVTDRHTKERAYDEAEAVLYRCLNNGLSFKVSQ---GNVIQ 426 (459)
T ss_pred HHHHHHHHHHHHHHHHhhCCCeeeeeec-c-ce--eEEEEccCccccCccHHHHHHHHHHHHhCCCEEEecC---CCEEE
Confidence 778888898888752 2322 1121 2 22 12222100000000 13467778889999875432 37899
Q ss_pred EeccCCCCHHHHHHHHccCChhHHHHhh
Q 001989 947 IEPTESESKSWTGIVMLSSPSEKKLHRL 974 (985)
Q Consensus 947 is~t~~~t~eeId~~~~~~~l~~~~~~~ 974 (985)
++|+..+|++|||+ +++++++++.++
T Consensus 427 ~~Ppl~it~~eid~--~~~~l~~~l~~~ 452 (459)
T PRK06082 427 LSPPLIITREELTQ--ALAILEEAIAKI 452 (459)
T ss_pred EeCCCccCHHHHHH--HHHHHHHHHHHH
Confidence 99999999999999 889999888765
|
|
| >PRK07481 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=9.8e-15 Score=171.27 Aligned_cols=340 Identities=15% Similarity=0.157 Sum_probs=201.7
Q ss_pred ccccccccCCCccccccccccccccccC-CCCchhhhhhHHHHHHHHHHHHHHHhCCC--ccceecCcHHHHHHHHHHHH
Q 001989 592 IPLGSCTMKLNATTEMMPVTWPSFANIH-PFAPADQAQGYQEMFNNLGEWLCTITGFD--SFSLQPNAGAAGEYAGLMVI 668 (985)
Q Consensus 592 ~~lG~~t~~~~~~~~~~~~~~~~f~~~~-p~~p~e~~~G~~~~~~e~~~~la~l~G~~--~~~~~~~sGa~a~~a~l~ai 668 (985)
+.||++++.+..+...+......+..+. ... +...++.+.|+++++-+ ...++.+||++|++++++++
T Consensus 54 ~~lGh~~p~v~~Ai~~ql~~~~~~~~~~~~~~---------~~~~~lae~L~~~~~~~~~~~v~f~~sGsEAve~AlklA 124 (449)
T PRK07481 54 VNVGHNREEVKEAIVRQLDELEYYSTFDGTTH---------PRAIELSYELIDMFAPEGMRRVFFSSGGSDSVETALKLA 124 (449)
T ss_pred hcCCCCCHHHHHHHHHHHHhccceecccccCC---------HHHHHHHHHHHHhcCCCCCCEEEEcCchHHHHHHHHHHH
Confidence 4588888877766554432222211110 111 22346778888887421 13467899999999999999
Q ss_pred HHHHHhcCCCCCCEEEE-cCCCCcccHHHHHHCC------------cEEEEEcCCCC-----CCCCHHHH--------HH
Q 001989 669 RAYHKARGDHHRNVCII-PVSAHGTNPATAAMCG------------MKIVSVGTDAK-----GNINIEEL--------RK 722 (985)
Q Consensus 669 r~~~~~~g~~~~~~IIv-~~~~Hg~~~~~a~~~G------------~~vv~v~~d~~-----g~iD~e~L--------~~ 722 (985)
|.|...+|..++.+||. ...+||....+....| ..+..++.+.. ...|++++ ++
T Consensus 125 r~~~~~~g~~~r~~ii~~~~~yHG~t~ga~s~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~ 204 (449)
T PRK07481 125 RQYWKVRGQPERTKFISLKQGYHGTHFGGASVNGNTVFRRNYEPLLPGCFHVETPWLYRNPFTEQDPEELARICARLLER 204 (449)
T ss_pred HHHHHhcCCCCCcEEEEECCCcCCcchhhhccCCCcccccccCCCCCCCEEeCCCcccccccCCCCHHHHHHHHHHHHHH
Confidence 98865555334566665 6789997755432111 01223332110 01244443 44
Q ss_pred HHH-hcCCCEEEEEEEcC-CCcccccc---CHHHHHHHHHHcCCEEEEEccccccccCCCCCCcc--------CCcEEEe
Q 001989 723 AAE-ANRDNLSTLMVTYP-STHGVYEE---GIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYI--------GADVCHL 789 (985)
Q Consensus 723 ~i~-~~~~~t~~Vvv~~p-n~~G~i~~---di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~--------g~Di~~~ 789 (985)
.|. ++++++++|+++-. ...|++.+ -+++|.++|+++|+++|+|+++ .|+.+.|.+ -+|++++
T Consensus 205 ~i~~~~~~~iAAviiEPvqg~gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~----tGfGRtG~~~a~~~~gv~PDiv~~ 280 (449)
T PRK07481 205 EIAFQGPDTIAAFIAEPVQGAGGVIVPPANFWPLVREVCDRHGILLIADEVV----TGFGRTGSWFGSRGWGVKPDIMCL 280 (449)
T ss_pred HHHhcCCCcEEEEEEecccCCcCCccCCHHHHHHHHHHHHHcCCEEEEeehh----hCcCcCchhhHhhhcCCCCCEEEE
Confidence 443 23467899998753 34566542 2899999999999999999886 344444432 2799887
Q ss_pred CCcccccccCCCCC-CceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHHH
Q 001989 790 NLHKTFCIPHGGGG-PGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGL 868 (985)
Q Consensus 790 s~hK~l~~p~g~GG-Pg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl 868 (985)
+ |.++ +|- | +|.+++++++.+.+..... ........+++.|+++.++++.+.|..+..+++
T Consensus 281 g--Kgl~----gG~~P-i~av~~~~~i~~~~~~~~~-----------~~~~~~h~~T~~gnpl~~aaa~a~L~~l~~~~l 342 (449)
T PRK07481 281 A--KGIT----SGYVP-LGATMVNARIADAFEANAD-----------FGGAIMHGYTYSGHPVACAAALATLDIVVREDL 342 (449)
T ss_pred e--eccc----CCCcC-ceEEEEcHHHHHHHhccCc-----------cccccccCCCCCCCHHHHHHHHHHHHHHHhhhH
Confidence 4 7763 331 5 5556667766554421100 000001123456788888888899998877655
Q ss_pred HHHHHHHHHHHHHHHHHhhcc---CCee--ecCCCCceeeEEEEEecC---ccccCC---CCHHHHHHHHHHCCCccCCC
Q 001989 869 TEASKIAILNANYMAKRLEKH---YPIL--FRGVNGTVAHEFIVDLRG---LKNTAG---IEPEDVAKRLMDYGFHGPTM 937 (985)
Q Consensus 869 ~~~~~~~~~~a~~l~~~L~~g---~~l~--~~~~~~~~~~~~iv~~~~---~~~~~g---~~~~~v~~~L~~~Gi~~~~~ 937 (985)
. ++..+..++|.+.|++. ++++ +.+. + .+ +-+.+.. .+...+ .....+.+.|.++|+++...
T Consensus 343 ~---~~~~~~g~~l~~~L~~l~~~~~~i~~vrG~-G-lm--~gi~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~~ 415 (449)
T PRK07481 343 P---ANAAKRGAYLLEGLQPLKERFELVGDVRGK-G-LM--LALDLVADKATREPIDPSKGYANAVADVARENGVLVRPS 415 (449)
T ss_pred H---HHHHHHHHHHHHHHHHHhhcCCCeEEEeec-c-eE--EEEEecccccccCCCCchhHHHHHHHHHHHhCCeEEEec
Confidence 4 45666778888887652 2322 1121 1 12 2222210 000000 01346778888999987543
Q ss_pred CCCCCCEEEEeccCCCCHHHHHHHHccCChhHHHHhhc
Q 001989 938 SWPVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRLK 975 (985)
Q Consensus 938 ~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~~ 975 (985)
.+.+|++|+...|++|||+ +++++++++.+++
T Consensus 416 ----g~~i~l~Ppl~it~~eid~--~~~~l~~~l~~~~ 447 (449)
T PRK07481 416 ----GTKIILSPPLVIQREDVDR--IVDALDAGLSAVP 447 (449)
T ss_pred ----CCEEEEECCCCCCHHHHHH--HHHHHHHHHHhcc
Confidence 2579999999999999999 7899998887653
|
|
| >PRK06058 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=5.2e-15 Score=173.64 Aligned_cols=327 Identities=15% Similarity=0.139 Sum_probs=194.7
Q ss_pred ccccccccCCCccccccccccccccccCCCCchhhhhhHHHHHHHHHHHHHHHhCCC--ccceecCcHHHHHHHHHHHHH
Q 001989 592 IPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFD--SFSLQPNAGAAGEYAGLMVIR 669 (985)
Q Consensus 592 ~~lG~~t~~~~~~~~~~~~~~~~f~~~~p~~p~e~~~G~~~~~~e~~~~la~l~G~~--~~~~~~~sGa~a~~a~l~air 669 (985)
..||++++.+..+...+..... + ++.. ....+...++.+.++++++.. ...++.+||++|++++++.+|
T Consensus 68 ~~lGh~~p~v~~ai~~q~~~~~-~--~~~~------~~~~~~~~~la~~l~~~~p~~~~~~v~f~~sGseA~e~AlklAr 138 (443)
T PRK06058 68 TSVGNSAPRVVEAVREQVARFT-H--TCFM------VTPYEGYVAVAEQLNRLTPGDHEKRSALFNSGAEAVENAVKIAR 138 (443)
T ss_pred hccCCCCHHHHHHHHHHHHhcc-C--cccc------ccCCHHHHHHHHHHHHhCCCCCCCEEEEeCCcHHHHHHHHHHHH
Confidence 4578887777665544432211 1 1110 001123457788888887533 245778999999999999888
Q ss_pred HHHHhcCCCCCCEEEE-cCCCCcccHHHHHHCC--------c-----EEEEEcCCCCCC------CC--------HHHHH
Q 001989 670 AYHKARGDHHRNVCII-PVSAHGTNPATAAMCG--------M-----KIVSVGTDAKGN------IN--------IEELR 721 (985)
Q Consensus 670 ~~~~~~g~~~~~~IIv-~~~~Hg~~~~~a~~~G--------~-----~vv~v~~d~~g~------iD--------~e~L~ 721 (985)
.|. ++++||. ...+||....+....+ + .+..+|.....+ .+ ++.++
T Consensus 139 ~~t------gr~~ii~~~~~yHG~t~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 212 (443)
T PRK06058 139 SYT------GRQAVVVFDHAYHGRTNLTMALTAKSMPYKSGFGPFAPEVYRAPMSYPYRDPKGLATDGEEAAARAITVIE 212 (443)
T ss_pred Hhh------CCCeEEEECCCcCcChHHHHhhcCCCcccccccCCCCCCceEcCCCcccccccccccchHHHHHHHHHHHH
Confidence 762 3456765 6678998766543222 1 122333211000 11 22233
Q ss_pred HHHHhcCCCEEEEEEEcCC-Ccccccc---CHHHHHHHHHHcCCEEEEEccccccccCCCCCCcc--------CCcEEEe
Q 001989 722 KAAEANRDNLSTLMVTYPS-THGVYEE---GIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYI--------GADVCHL 789 (985)
Q Consensus 722 ~~i~~~~~~t~~Vvv~~pn-~~G~i~~---di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~--------g~Di~~~ 789 (985)
+.+. .+++++|+++-.. ..|++.+ -+++|.++|+++|+++|+|+++. |+.+.|.+ -+|++++
T Consensus 213 ~~~~--~~~iAavi~EPi~g~gG~~~p~~~yl~~lr~lc~~~gillI~DEV~t----GfgRtG~~fa~~~~gv~PDiv~~ 286 (443)
T PRK06058 213 KQVG--ADNLAAVIIEPIQGEGGFIVPAEGFLPALLEWCRENGVVFIADEVQT----GFARTGAWFACEHEGIVPDLITT 286 (443)
T ss_pred HhhC--CCceEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecccc----CCCcChhhhHHHhcCCCCCEEEE
Confidence 3332 2578888875422 3566641 28999999999999999998873 34444422 2699877
Q ss_pred CCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHHHH
Q 001989 790 NLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLT 869 (985)
Q Consensus 790 s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl~ 869 (985)
+ |.++ ||..+|.+++++++.+.+.... ..+++.|+++.++++.+.|..+..+++.
T Consensus 287 g--K~l~-----~G~Pi~av~~~~~i~~~~~~~~------------------~~~T~~gnpl~~aaa~a~L~~~~~~~l~ 341 (443)
T PRK06058 287 A--KGIA-----GGLPLSAVTGRAEIMDAPHPGG------------------LGGTYGGNPVACAAALAAIETIEEDDLV 341 (443)
T ss_pred c--cccc-----CCCccEEEEEcHHHHhhccCCC------------------CCCCCCCCHHHHHHHHHHHHHHHHcCHH
Confidence 4 7774 3444777777877765542110 1123455777788888888887665443
Q ss_pred HHHHHHHHHHHHHHHHhhcc---CCee--ecCCCCceeeEEEEEecC--ccccCCCCHHHHHHHHHHCCCccCCCCCCCC
Q 001989 870 EASKIAILNANYMAKRLEKH---YPIL--FRGVNGTVAHEFIVDLRG--LKNTAGIEPEDVAKRLMDYGFHGPTMSWPVP 942 (985)
Q Consensus 870 ~~~~~~~~~a~~l~~~L~~g---~~l~--~~~~~~~~~~~~iv~~~~--~~~~~g~~~~~v~~~L~~~Gi~~~~~~~p~~ 942 (985)
++..++.++|.++|++. ++++ +.+. +. + +.+.+.. .+.........+.+.|.++|+.+.... +..
T Consensus 342 ---~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~-G~-~--~~i~~~~~~~~~~~~~~~~~l~~~~~~~Gv~~~~~~-~~~ 413 (443)
T PRK06058 342 ---ARARQIEALMTDRLRALAAEDDRIGDVRGR-GA-M--IAIELVKPGTTEPDAELTKALAAAAHAAGVIVLTCG-TYG 413 (443)
T ss_pred ---HHHHHHHHHHHHHHHHHHhhCCcEEeeecc-ce-E--EEEEEecCCCCCCcHHHHHHHHHHHHHCCeEEeccC-CCC
Confidence 45667788888888752 3332 1221 22 2 2222210 000000013457777889999875432 113
Q ss_pred CEEEEeccCCCCHHHHHHHHccCChhHHHHhh
Q 001989 943 GTLMIEPTESESKSWTGIVMLSSPSEKKLHRL 974 (985)
Q Consensus 943 ~~lris~t~~~t~eeId~~~~~~~l~~~~~~~ 974 (985)
++||+.|+...|++|||+ +++.|+++++++
T Consensus 414 ~~lr~~Ppl~~t~~~i~~--~~~~l~~~l~~~ 443 (443)
T PRK06058 414 NVIRLLPPLVIGDELLRE--GLDVLEAALADL 443 (443)
T ss_pred CEEEEECCCccCHHHHHH--HHHHHHHHHHhC
Confidence 799999999999999999 788898887653
|
|
| >cd06502 TA_like Low-specificity threonine aldolase (TA) | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.5e-15 Score=170.50 Aligned_cols=273 Identities=18% Similarity=0.105 Sum_probs=176.0
Q ss_pred HHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc----
Q 001989 213 LLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL---- 288 (985)
Q Consensus 213 i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~---- 288 (985)
..++++.+++++| ..++.++.+||.++..++.++ .++||+|+++...|+++...+. .+...|++++.++.
T Consensus 34 ~~~l~~~~a~~~g--~~~~~~~~~gt~a~~~~~~~l---~~~gd~v~~~~~~~~~~~~~~~-~~~~~g~~~~~v~~~~~~ 107 (338)
T cd06502 34 TAKLEARAAELFG--KEAALFVPSGTAANQLALAAH---TQPGGSVICHETAHIYTDEAGA-PEFLSGVKLLPVPGENGK 107 (338)
T ss_pred HHHHHHHHHHHhC--CCeEEEecCchHHHHHHHHHh---cCCCCeEEEecCcceeeecCCc-HHHHcCceEEeecCCCCc
Confidence 5567789999999 345778888886665544443 2489999999999987654321 12235888877754
Q ss_pred ---hhhhc-cCC-------CEeEEEEEcCCCCee---eccHHHHHHHHHhCCcEEEEEe-cCc----cccCCCCCCcccc
Q 001989 289 ---KDIDY-KSG-------DVCGVLVQYPGTEGE---VLDYGDFIKNAHANGVKVVMAT-DLL----ALTILKPPGELGA 349 (985)
Q Consensus 289 ---~~l~~-l~~-------~t~~V~v~~pn~~G~---v~di~~I~~~a~~~galliV~a-~~~----~lg~l~~~~~~Ga 349 (985)
+++++ +.+ ++++|++.+||..|. +.|+++|+++||++|++++||. +.. +.|........++
T Consensus 108 ~d~~~l~~~i~~~~~~~~~~~~~v~l~~p~n~g~~~~~~~l~~i~~~~~~~~~~livDea~~~~~~~~~~~~~~~~~~~~ 187 (338)
T cd06502 108 LTPEDLEAAIRPRDDIHFPPPSLVSLENTTEGGTVYPLDELKAISALAKENGLPLHLDGARLANAAAALGVALKTYKSGV 187 (338)
T ss_pred CCHHHHHHHhhccCCCcCCcceEEEEEeecCCccccCHHHHHHHHHHHHHcCCeEeechHHHHHHHHhcCCCHHHHHhcC
Confidence 45555 543 789999999966675 4578899999999999999942 110 1121001123589
Q ss_pred eEEEecC-ccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHH
Q 001989 350 DIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLA 428 (985)
Q Consensus 350 Di~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a 428 (985)
|+++.+. |+|+.| +.++++.++++++++.... . + ..++.+. .++.+
T Consensus 188 d~~~~s~sK~~~~~------~g~~~~~~~~~~~~~~~~~----------~----------~----~~~~~~~---~~~~~ 234 (338)
T cd06502 188 DSVSFCLSKGGGAP------VGAVVVGNRDFIARARRRR----------K----------Q----AGGGMRQ---SGFLA 234 (338)
T ss_pred CEEEEeccccCCCc------cceEEECCHHHHHHHHHHH----------H----------H----hCCChhh---HHHHH
Confidence 9999887 777644 3356777877776652100 0 0 0011111 12211
Q ss_pred HHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCCCcceEEEecCC----HHHHHHHHH---HcCceeee
Q 001989 429 NMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDTVKVKCAD----AHAIASAAY---KIEMNLRV 501 (985)
Q Consensus 429 ~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~----~~~v~~~L~---~~GI~~~~ 501 (985)
.++ +..+...+..+..++..++++++.+.|+++| +.+.. +..+.+.+..+. ..++.+.|. ++|+.+..
T Consensus 235 -~a~--~~~L~~~~~~~~~~~~~~~~~~l~~~L~~~~-~~~~~-~~~~~~~v~~~~~~~~~~~l~~~l~~~~~~gi~~~~ 309 (338)
T cd06502 235 -AAG--LAALENDLWLRRLRHDHEMARRLAEALEELG-GLESE-VQTNIVLLDPVEANAVFVELSKEAIERRGEGVLFYA 309 (338)
T ss_pred -HHH--HHHhcCchHHHHHHHHHHHHHHHHHHHHhcC-CCccc-ccCCeEEEecCCccHHHHHHHHHHHHhhhCCEEEEe
Confidence 122 2333344667777888999999999999987 54432 333445555543 334444443 57998876
Q ss_pred ecCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 502 VDSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 502 ~~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
...+.+|++++.++|++|++++++++..
T Consensus 310 ~~~~~lRi~~~~~~~~~~i~~~~~~l~~ 337 (338)
T cd06502 310 WGEGGVRFVTHWDTTEEDVDELLSALKA 337 (338)
T ss_pred cCCCeEEEEeecCCCHHHHHHHHHHHhc
Confidence 5458999999999999999999999863
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway. |
| >PRK02731 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.2e-15 Score=173.07 Aligned_cols=284 Identities=14% Similarity=0.143 Sum_probs=183.9
Q ss_pred HHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcCCCCCC
Q 001989 635 NNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKGN 714 (985)
Q Consensus 635 ~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~d~~g~ 714 (985)
.++++.+++++|.+...+..++|++..+ ..+++.+. .++++|+++++.|..+...++..|++++.+|. .++.
T Consensus 70 ~~lr~~ia~~~~~~~~~i~~t~G~~~~l--~~~~~~l~-----~~gd~vl~~~p~y~~~~~~~~~~g~~~~~~~~-~~~~ 141 (367)
T PRK02731 70 FELKAALAEKFGVDPERIILGNGSDEIL--ELLARAYL-----GPGDEVIYSEHGFAVYPIAAQAVGAKPVEVPA-KDYG 141 (367)
T ss_pred HHHHHHHHHHhCcCHHHEEEcCCHHHHH--HHHHHHhc-----CCCCEEEEecCCHHHHHHHHHHcCCeEEEecc-cCCC
Confidence 3688899999998776666666655221 22223221 36789999887776666667789999999998 4577
Q ss_pred CCHHHHHHHHHhcCCCEEEEEEEcCC-CccccccCHHHHHHHHHHc--CCEEEEEcccccccc-CCCCC----CccCC-c
Q 001989 715 INIEELRKAAEANRDNLSTLMVTYPS-THGVYEEGIDEICKIIHDN--GGQVYMDGANMNAQV-GLTSP----GYIGA-D 785 (985)
Q Consensus 715 iD~e~L~~~i~~~~~~t~~Vvv~~pn-~~G~i~~di~eI~~la~~~--galliVD~a~~~~~~-~l~~p----g~~g~-D 785 (985)
+|+++++++++ +++++|++++|+ ++|.+. +.++|.++++.. |+++++|+++..... ....+ ..... .
T Consensus 142 ~~~~~l~~~~~---~~~~~v~l~~p~nptG~~~-~~~~l~~l~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~ 217 (367)
T PRK02731 142 HDLDAMLAAVT---PRTRLVFIANPNNPTGTYL-PAEEVERFLAGVPPDVLVVLDEAYAEYVRRKDYEDGLELVAKFPNV 217 (367)
T ss_pred CCHHHHHHHhC---CCCcEEEEeCCCCCCCcCC-CHHHHHHHHHhCCCCcEEEEECcHHHhccCcCcccHHHHHhhcCCE
Confidence 99999999997 788999999994 799998 899999999875 899999998732110 00000 01112 3
Q ss_pred EEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcH
Q 001989 786 VCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGS 865 (985)
Q Consensus 786 i~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~ 865 (985)
+++.|+.|.|+. .|.++|++++++++.+.+.... ...+++ .....++..++. ..
T Consensus 218 i~~~S~SK~~g~----~G~RiG~l~~~~~~~~~l~~~~--------------~~~~~~------~~~~~~a~~~l~--~~ 271 (367)
T PRK02731 218 VVTRTFSKAYGL----AGLRVGYGIAPPEIIDALNRVR--------------QPFNVN------SLALAAAVAALD--DD 271 (367)
T ss_pred EEEeeehHhhcC----cccceeeeeCCHHHHHHHHHcc--------------CCCCCC------HHHHHHHHHHhC--CH
Confidence 556677787743 4678999999877654432110 001111 111122223332 12
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCC-CCCCC
Q 001989 866 KGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMS-WPVPG 943 (985)
Q Consensus 866 eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~-~p~~~ 943 (985)
+.+++..+...++.+++.+.|++ ++.+. ++.+. + +.+.++ .+.+..++++.|.++||.+.... +..++
T Consensus 272 ~~~~~~~~~~~~~~~~l~~~L~~~g~~~~--~~~g~-~--~~i~~~-----~~~~~~~~~~~L~~~gI~v~~~~~~~~~~ 341 (367)
T PRK02731 272 AFVEKSRALNAEGMAWLTEFLAELGLEYI--PSVGN-F--ILVDFD-----DGKDAAEAYQALLKRGVIVRPVAGYGLPN 341 (367)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCccC--CCCce-E--EEEECC-----CCCCHHHHHHHHHHCCEEEEeCCCCCCCC
Confidence 33445555566777888888876 44332 22222 2 345543 13578899999999999876432 32357
Q ss_pred EEEEeccCCCCHHHHHHHHccCChhHHH
Q 001989 944 TLMIEPTESESKSWTGIVMLSSPSEKKL 971 (985)
Q Consensus 944 ~lris~t~~~t~eeId~~~~~~~l~~~~ 971 (985)
++|+++ .+.+|+++ ++++|++++
T Consensus 342 ~iRis~---~~~~e~~~--l~~aL~~~~ 364 (367)
T PRK02731 342 ALRITI---GTEEENRR--FLAALKEFL 364 (367)
T ss_pred eEEEec---CCHHHHHH--HHHHHHHHH
Confidence 999998 48999999 778888765
|
|
| >PRK02936 argD acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=6.4e-15 Score=169.94 Aligned_cols=281 Identities=15% Similarity=0.145 Sum_probs=176.0
Q ss_pred HHHHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEE-cCCCCcccHHHHHHCCc--------
Q 001989 632 EMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCII-PVSAHGTNPATAAMCGM-------- 702 (985)
Q Consensus 632 ~~~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv-~~~~Hg~~~~~a~~~G~-------- 702 (985)
+...++.+++++.++.+ ..++.+||++|++++++.++.+ .++++||+ ...+||.........+.
T Consensus 71 ~~~~~la~~l~~~~~~~-~~~~~~sG~~a~~~A~~~a~~~------~g~~~vi~~~~~~Hg~~~~~~~~~~~~~~~~~~~ 143 (377)
T PRK02936 71 SLQEEVASLLAENSAGD-LVFFCNSGAEANEAALKLARKH------TGKSKIVTFEQSFHGRTFGTMSATGQEKIKEGFG 143 (377)
T ss_pred HHHHHHHHHHHhcCCCC-EEEEeCCcHHHHHHHHHHHHHh------cCCCeEEEECCCcCCCcHHhhhccCCccccccCC
Confidence 34557777888777654 3466789999999888877654 23456666 46789877655443332
Q ss_pred ----EEEEEcCCCCCCCCHHHHHHHHHhcCCCEEEEEEEcCC-Ccccccc---CHHHHHHHHHHcCCEEEEEcccccccc
Q 001989 703 ----KIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPS-THGVYEE---GIDEICKIIHDNGGQVYMDGANMNAQV 774 (985)
Q Consensus 703 ----~vv~v~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~pn-~~G~i~~---di~eI~~la~~~galliVD~a~~~~~~ 774 (985)
++..+|. .|++++++.+. +++++|+++.+. ..|.+.+ ++++|.++|+++|+++++|++|. +++
T Consensus 144 ~~~~~~~~~~~-----~d~~~l~~~~~---~~~~~ii~e~i~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DEv~~-g~g 214 (377)
T PRK02936 144 PLLPGFTHVPF-----NDIKALKEVMN---EEVAAVMLEVVQGEGGVIPADPAFLQEVQTLCKKFGALLIIDEVQT-GIG 214 (377)
T ss_pred CCCCCceEeCC-----CCHHHHHHhcc---CCeEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEEecccc-CCC
Confidence 2233443 28999999997 789999998763 4565531 39999999999999999999983 332
Q ss_pred CCCCC---Ccc--CCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhh
Q 001989 775 GLTSP---GYI--GADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGS 849 (985)
Q Consensus 775 ~l~~p---g~~--g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~ 849 (985)
-...+ ..+ ..|++++ .|+|+ +|..+|++++++++.+.+.... ... ++.++
T Consensus 215 ~~g~~~~~~~~~~~~di~t~--sK~l~-----~G~~ig~v~~~~~~~~~~~~~~--------------~~~----t~~~~ 269 (377)
T PRK02936 215 RTGTLFAYEQFGLDPDIVTV--AKGLG-----NGIPVGAMIGKKELGTAFGPGS--------------HGS----TFGGN 269 (377)
T ss_pred cCchhhHHHhhCCCCcEEEE--ccccc-----CCCccEEEEEcHHHHhhccCCC--------------CCC----CCCCC
Confidence 11111 112 3577654 58774 3445778888877766543210 000 11224
Q ss_pred hHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhcc---CCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHH
Q 001989 850 ALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKH---YPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKR 926 (985)
Q Consensus 850 ~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~g---~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~ 926 (985)
+..++++.+.|..+..+ +..++..++.++++++|++. +........... .+.+.+. .+...+.+.
T Consensus 270 ~~~~aaa~a~l~~~~~~---~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~--~~~i~~~-------~~~~~~~~~ 337 (377)
T PRK02936 270 PLAMAAAKEVLQVIKQP---SFLEEVQEKGEYFLQKLQEELEHLECVKNIRGKGL--MIGIECT-------EEVAPVIEQ 337 (377)
T ss_pred HHHHHHHHHHHHHHHhc---cHHHHHHHHHHHHHHHHHHHHhhCCcEEeEeecce--EEEEEec-------chHHHHHHH
Confidence 44455556666655332 23345667778888888652 332211000111 2334443 136788999
Q ss_pred HHHCCCccCCCCCCCCCEEEEeccCCCCHHHHHHHHccCChhHH
Q 001989 927 LMDYGFHGPTMSWPVPGTLMIEPTESESKSWTGIVMLSSPSEKK 970 (985)
Q Consensus 927 L~~~Gi~~~~~~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~ 970 (985)
|.++|+.+.... .+.+|++|+..++++||++ +++.|+++
T Consensus 338 l~~~gv~v~~~g---~~~lRi~p~~~~~~~~i~~--~i~~l~~~ 376 (377)
T PRK02936 338 LREEGLLVLSAG---PNVIRLLPPLVVTKEELDQ--AVYLLKKV 376 (377)
T ss_pred HHHCCeEEecCC---CCEEEEECCcccCHHHHHH--HHHHHHHh
Confidence 999999874322 3789999999999999999 66766654
|
|
| >TIGR02407 ectoine_ectB diaminobutyrate--2-oxoglutarate aminotransferase | Back alignment and domain information |
|---|
Probab=99.68 E-value=8.7e-15 Score=170.17 Aligned_cols=339 Identities=15% Similarity=0.149 Sum_probs=203.4
Q ss_pred HHHHHHHHHHhccccCcccccccccccccCCCccccccccccccccccCCCCchhhhhhHHHHHHHHHHHHHHHhC----
Q 001989 571 HELLRYIHLLQSKELSLCHSMIPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITG---- 646 (985)
Q Consensus 571 ~e~~~~l~~l~~~~~~~~~~~~~lG~~t~~~~~~~~~~~~~~~~f~~~~p~~p~e~~~G~~~~~~e~~~~la~l~G---- 646 (985)
.+..+|++..++-. ...||++++.+..+...+........+. .+. .+...++.+++++++.
T Consensus 32 ~dG~~ylD~~~g~~------~~~lGh~~p~v~~ai~~ql~~~~~~~~~-~~~--------~~~~~~lae~l~~~~~~~~~ 96 (412)
T TIGR02407 32 EDGKEYIDFFAGAG------ALNYGHNNPKLKQALIDYLADDGIIHSL-DMA--------TEAKREFLETFNEIILKPRG 96 (412)
T ss_pred CCCCEEEEcccchh------hccCCCCCHHHHHHHHHHHhhccceecc-ccC--------cHHHHHHHHHHHHhccCccC
Confidence 44455666544432 3458998888876655543221111111 110 1223467777777642
Q ss_pred CCc-cceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEE-cCCCCcccHHHHHHCC------------cEEEEEcCCCC
Q 001989 647 FDS-FSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCII-PVSAHGTNPATAAMCG------------MKIVSVGTDAK 712 (985)
Q Consensus 647 ~~~-~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv-~~~~Hg~~~~~a~~~G------------~~vv~v~~d~~ 712 (985)
.+. ..|+.+||++|++++++.+|.| +++++||. ...+||....+....| ..+..+|.+..
T Consensus 97 ~~~~~~f~~~sGseA~e~AlklAr~~------tgr~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~p~~~~ 170 (412)
T TIGR02407 97 LDYKVQFPGPTGTNAVESALKLARKV------TGRSNVVSFTNAFHGMTLGSLSVTGNRFKRQGAGVPLSNVSRMPYDGY 170 (412)
T ss_pred CCceEEEeCCCchHHHHHHHHHHhhh------cCCCeEEEECCCcCCchHHHHHhcCCcccccCCCCCCCCeEECCCCCc
Confidence 222 2344589999999999999876 23556765 6789998765543211 13444554211
Q ss_pred C---CCCHHHHHHHHHhcC---CCEEEEEEEcC-CCccccc---cCHHHHHHHHHHcCCEEEEEccccccccCCCCCC--
Q 001989 713 G---NINIEELRKAAEANR---DNLSTLMVTYP-STHGVYE---EGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPG-- 780 (985)
Q Consensus 713 g---~iD~e~L~~~i~~~~---~~t~~Vvv~~p-n~~G~i~---~di~eI~~la~~~galliVD~a~~~~~~~l~~pg-- 780 (985)
. ..+++.+++.++++. +++++|+++-. +..|++. ..+++|.++|+++|+++|+|+++. |+.+.|
T Consensus 171 ~~~~~~~~~~l~~~~~~~~~~~~~~aavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~t----G~GRtG~~ 246 (412)
T TIGR02407 171 LGGDVDTIAYFEKLLEDSSSGVDLPAAVILETVQGEGGINVASDEWLQRLEKLCRRHDILLIVDDIQA----GCGRTGTF 246 (412)
T ss_pred cccchhHHHHHHHHHHhccCCCCceEEEEeccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhh----CCCccchh
Confidence 1 135788898887542 45788887542 4567643 258999999999999999999873 333332
Q ss_pred ------ccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHH
Q 001989 781 ------YIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILP 854 (985)
Q Consensus 781 ------~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~ 854 (985)
...+|+++++ |+++ .||-.+|++++++++ ..+.... ..+++.|+++.++
T Consensus 247 ~a~~~~~v~PDi~~~~--K~lg----~~G~pigav~~~~~~-~~~~~~~------------------~~~T~~gnpl~~a 301 (412)
T TIGR02407 247 FSFEPAGIEPDIVCLS--KSIS----GYGLPLALTLIKPEL-DVWKPGE------------------HNGTFRGNNLAFV 301 (412)
T ss_pred HHhcccCCCCCEEEec--hhcc----CCccceeEEEEchhh-hccCCCc------------------cCCCCCccHHHHH
Confidence 2347988764 8873 324458888888765 3222110 0112344666666
Q ss_pred HHHHHHHH-hcHHHHHHHHHHHHHHHHHHHHHhhc---cCC-eeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHH
Q 001989 855 ISYTYIAM-MGSKGLTEASKIAILNANYMAKRLEK---HYP-ILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMD 929 (985)
Q Consensus 855 ~a~a~l~~-lg~eGl~~~~~~~~~~a~~l~~~L~~---g~~-l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~ 929 (985)
++.+.+.. +..+.+. ++..+..++++++|+. .+. +.........+ +.+.++. ......+.+.|.+
T Consensus 302 aa~a~l~~~i~~~~l~---~~~~~~g~~l~~~l~~l~~~~~~~~~~vrg~Gl~--~~l~l~~-----~~~~~~~~~~~~~ 371 (412)
T TIGR02407 302 TATAALEYYWSDDAFE---KAVQRKSEIIQERLDRIVAEYPELIKQVRGRGLM--QGIECGD-----GDLAGKIAKAAFE 371 (412)
T ss_pred HHHHHHHHHhcccHHH---HHHHHHHHHHHHHHHHHHhhCCCceEeeecceeE--EEEEecC-----hHHHHHHHHHHHH
Confidence 66777874 6554443 4555667777777764 122 21111111111 2344431 2235678899999
Q ss_pred CCCccCCCCCCCCCEEEEeccCCCCHHHHHHHHccCChhHHHH
Q 001989 930 YGFHGPTMSWPVPGTLMIEPTESESKSWTGIVMLSSPSEKKLH 972 (985)
Q Consensus 930 ~Gi~~~~~~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~ 972 (985)
+|+.+.... +..+.||++|+..+|++|+|+ ++++++++++
T Consensus 372 ~Gv~v~~~~-~~~~~lr~~p~l~~t~~~i~~--~~~~l~~~l~ 411 (412)
T TIGR02407 372 NGLIIETSG-PNDEVIKLLPPLTIDEETLQQ--GLDILEQAVE 411 (412)
T ss_pred CCCEEeccC-CCCCEEEEECCCCCCHHHHHH--HHHHHHHHHh
Confidence 999885432 124789999999999999999 7788888774
|
Members of this family of class III pyridoxal-phosphate-dependent aminotransferases are diaminobutyrate--2-oxoglutarate aminotransferase (EC 2.6.1.76) that catalyze the first step in ectoine biosynthesis from L-aspartate beta-semialdehyde. This family is readily separated phylogenetically from enzymes with the same substrate and product but involved in other process such as siderophore or 1,3-diaminopropane biosynthesis. The family TIGR00709 previously included both groups but has now been revised to exclude the ectoine biosynthesis proteins of this family. Ectoine is a compatible solute particularly effective in conferring salt tolerance. |
| >TIGR01328 met_gam_lyase methionine gamma-lyase | Back alignment and domain information |
|---|
Probab=99.68 E-value=8.2e-15 Score=169.14 Aligned_cols=214 Identities=23% Similarity=0.251 Sum_probs=156.5
Q ss_pred HHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCchh---
Q 001989 214 LNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDLKD--- 290 (985)
Q Consensus 214 ~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~~~--- 290 (985)
.++++.+|+++|.+. +.++.+|++++.+++.++ . ++||+|+++...|+.....+...+...|++++++|.++
T Consensus 62 ~~le~~lA~l~g~~~--av~~~sG~~Ai~~~l~al-~--~~Gd~Vi~~~~~y~~t~~~~~~~~~~~G~~~~~vd~~d~e~ 136 (391)
T TIGR01328 62 SNLEGRIAFLEGTEA--AVATSSGMGAIAATLLTI-L--KAGDHLISDECLYGCTFALLEHALTKFGIQVDFINMAIPEE 136 (391)
T ss_pred HHHHHHHHHHhCCCc--EEEECCHHHHHHHHHHHH-h--CCCCEEEEecCcchHHHHHHHHHHhcCCeEEEEECCCCHHH
Confidence 457899999999886 667888888777666554 2 38999999999999888887776777899999998754
Q ss_pred hhc-cCCCEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCCCCCcccceEEEecC-ccccccCCCCC
Q 001989 291 IDY-KSGDVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKPPGELGADIVVGSA-QRFGVPMGYGG 367 (985)
Q Consensus 291 l~~-l~~~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~~~~~~GaDi~v~s~-k~lg~P~~~GG 367 (985)
+++ ++++|++|++.+| |++|.+.|+++|+++||++|++++|| +.++.+....|.++|+|+++.|. |.+++| |+
T Consensus 137 l~~~i~~~tklV~le~p~Np~G~v~dl~~I~~la~~~gi~livD-~a~a~~~~~~~~~~g~Divv~S~sK~lgg~---g~ 212 (391)
T TIGR01328 137 VKAHIKDNTKIVYFETPANPTMKLIDMERVCRDAHSQGVKVIVD-NTFATPMLTNPVALGVDVVVHSATKYIGGH---GD 212 (391)
T ss_pred HHHhhccCCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEE-CCCchhccCCchhcCCCEEEccccccccCC---CC
Confidence 445 7889999999998 78999999999999999999999994 45566666667788999999998 777643 33
Q ss_pred CcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcchHHHHH
Q 001989 368 PHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIA 447 (985)
Q Consensus 368 P~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i~ 447 (985)
+.+|+++.++++++++- ..+ ++.... + ..++. .|+ +...+.+-+..+.
T Consensus 213 ~~gG~v~~~~~li~~l~--~~~----------------------~~~~~g-~--~l~~~---~a~--l~l~~L~tl~~r~ 260 (391)
T TIGR01328 213 VVAGLICGKAELLQQIR--MVG----------------------IKDMTG-S--VISPF---DAW--LILRGLKTLNIRM 260 (391)
T ss_pred ceEEEEEcCHHHHHHHH--HHH----------------------HHhCCC-C--CCCcH---HHH--HHHhCcCcHHHHH
Confidence 44688888887765541 000 000000 0 00111 122 2333445667777
Q ss_pred HHHHHHHHHHHHHHhcCCCeE
Q 001989 448 QRVHGLAGTFALGLKKLGTVE 468 (985)
Q Consensus 448 ~~~~~~a~~l~~~L~~~g~~~ 468 (985)
++..+++.++.+.|++..+++
T Consensus 261 ~~~~~na~~la~~L~~~p~v~ 281 (391)
T TIGR01328 261 KRHSENAMKVAEYLKSHPAVE 281 (391)
T ss_pred HHHHHHHHHHHHHHHhCCCcc
Confidence 888899999999999885454
|
This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine. |
| >cd00610 OAT_like Acetyl ornithine aminotransferase family | Back alignment and domain information |
|---|
Probab=99.68 E-value=6.8e-15 Score=171.76 Aligned_cols=298 Identities=16% Similarity=0.153 Sum_probs=185.8
Q ss_pred HHHHHHHHHHHHHHhCCCc-cceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEc-CCCCcccHHHHHHCC-------
Q 001989 631 QEMFNNLGEWLCTITGFDS-FSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIP-VSAHGTNPATAAMCG------- 701 (985)
Q Consensus 631 ~~~~~e~~~~la~l~G~~~-~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~-~~~Hg~~~~~a~~~G------- 701 (985)
.+...++++.+++++|.+. ..++.+||++|+++++.+++.+ .++++|++. ..+||.........+
T Consensus 78 ~~~~~~l~~~l~~~~~~~~~~v~~~~sgsea~~~al~~~~~~------~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~ 151 (413)
T cd00610 78 NEPAVELAELLLALTPEGLDKVFFVNSGTEAVEAALKLARAY------TGRKKIISFEGAYHGRTLGALSLTGSKKYRGG 151 (413)
T ss_pred CHHHHHHHHHHHHhCCCCCCEEEEcCcHHHHHHHHHHHHHHH------cCCCeEEEECCCcCCccHHHHHhcCCcccccc
Confidence 3556789999999998433 3466789999998888877654 246777774 468887765544322
Q ss_pred -----cEEEEEcCCCC------CCCCHHHHHHHHHhcCCCEEEEEEEcCC-CccccccC----HHHHHHHHHHcCCEEEE
Q 001989 702 -----MKIVSVGTDAK------GNINIEELRKAAEANRDNLSTLMVTYPS-THGVYEEG----IDEICKIIHDNGGQVYM 765 (985)
Q Consensus 702 -----~~vv~v~~d~~------g~iD~e~L~~~i~~~~~~t~~Vvv~~pn-~~G~i~~d----i~eI~~la~~~galliV 765 (985)
.+++.+|.+.. ...|+++|+++++++++++++|+++..+ .+|.+. + +++|.++|+++|+++++
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~vi~~p~~~~~G~~~-~~~~~l~~l~~l~~~~~~~li~ 230 (413)
T cd00610 152 FGPLLPGVLHVPYPYRYRPPAELADDLEALEEALEEHPEEVAAVIVEPIQGEGGVIV-PPPGYLKALRELCRKHGILLIA 230 (413)
T ss_pred CCCCCCCcEEeCCCccccchhhHHHHHHHHHHHHhcCCCCEEEEEEccccCCCCCcc-CCHHHHHHHHHHHHHcCCEEEE
Confidence 24667776532 2348999999998543467767665433 468765 5 99999999999999999
Q ss_pred EccccccccCCCCC---C--ccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCC
Q 001989 766 DGANMNAQVGLTSP---G--YIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLG 840 (985)
Q Consensus 766 D~a~~~~~~~l~~p---g--~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~ 840 (985)
|+++. +++..... . ...+|++++| |+|+ +|.++|++++++++.+.+....+ ...+
T Consensus 231 Dev~~-g~g~~g~~~~~~~~~~~~d~~t~s--K~l~-----~g~~~g~~~~~~~~~~~~~~~~~------------~~~~ 290 (413)
T cd00610 231 DEVQT-GFGRTGKMFAFEHFGVEPDIVTLG--KGLG-----GGLPLGAVLGREEIMDAFPAGPG------------LHGG 290 (413)
T ss_pred ecccc-CCCcCcchhhHhhcCCCCCeEEEc--cccc-----CccccEEEEEcHHHHHhhccCCC------------CCCC
Confidence 99874 22111110 1 1235776554 8885 23568888888877765411100 0001
Q ss_pred CCCCcchhhhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhcc---CCeeecC-CCCceeeEEEEEecCccc--
Q 001989 841 TIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKH---YPILFRG-VNGTVAHEFIVDLRGLKN-- 914 (985)
Q Consensus 841 ~i~s~~~g~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~g---~~l~~~~-~~~~~~~~~iv~~~~~~~-- 914 (985)
. +.+++..++++.+.++.+..+ +..++..+++++++++|++. .++.... ..+. .+.+.+..-..
T Consensus 291 t----~~~~~~~~~a~~a~l~~l~~~---~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~---~~~~~~~~~~~~~ 360 (413)
T cd00610 291 T----FGGNPLACAAALAVLEVLEEE---GLLENAAELGEYLRERLRELAEKHPLVGDVRGRGL---MIGIELVKDRATK 360 (413)
T ss_pred C----CCcCHHHHHHHHHHHHHHHhc---cHHHHHHHHHHHHHHHHHHHHhhCCcEEEeecCce---EEEEEEecCCCcC
Confidence 1 112334445556667766543 34456777888888888752 1222111 1122 12333321000
Q ss_pred -cCCCCHHHHHHHHHHCCCccCCCCCCCCCEEEEeccCCCCHHHHHHHHccCChhHH
Q 001989 915 -TAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKSWTGIVMLSSPSEKK 970 (985)
Q Consensus 915 -~~g~~~~~v~~~L~~~Gi~~~~~~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~ 970 (985)
........+.+.|.++|+.+.... .+.+|++++..+|++||++ +++.|+++
T Consensus 361 ~~~~~~~~~~~~~l~~~gv~v~~~~---~~~lR~~~~~~~t~~~i~~--~~~~l~~~ 412 (413)
T cd00610 361 PPDKELAAKIIKAALERGLLLRPSG---GNVIRLLPPLIITEEEIDE--GLDALDEA 412 (413)
T ss_pred CcchHHHHHHHHHHHHCCeEEeecC---CCEEEEECCCcCCHHHHHH--HHHHHHHh
Confidence 000245779999999999885443 3789999999999999999 66766654
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation. |
| >PRK09264 diaminobutyrate--2-oxoglutarate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.2e-14 Score=169.71 Aligned_cols=342 Identities=15% Similarity=0.126 Sum_probs=205.0
Q ss_pred HHHHHHHHHHhccccCcccccccccccccCCCccccccccccccccccCCCCchhhhhhHHHHHHHHHHHHHHHhC----
Q 001989 571 HELLRYIHLLQSKELSLCHSMIPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITG---- 646 (985)
Q Consensus 571 ~e~~~~l~~l~~~~~~~~~~~~~lG~~t~~~~~~~~~~~~~~~~f~~~~p~~p~e~~~G~~~~~~e~~~~la~l~G---- 646 (985)
.+..+|++..++-. ...||++++.+..+...+.......... .+. .+...++.+.+++++.
T Consensus 36 ~dG~~ylD~~~g~~------~~~lGh~~p~v~~ai~~ql~~~~~~~~~-~~~--------~~~~~~lae~l~~~~~~~~~ 100 (425)
T PRK09264 36 EDGKEYIDFFAGAG------ALNYGHNNPVLKQALIDYLQRDGITHGL-DMH--------TTAKREFLETFEETILKPRG 100 (425)
T ss_pred CCCCEeeecccchh------hccCCCCCHHHHHHHHHHHHhccccccc-ccC--------cHHHHHHHHHHHHhhcCCcC
Confidence 45566777655432 3468999888877655544221111111 111 0223466777777652
Q ss_pred CCc-cceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEE-cCCCCcccHHHHHHC---------C---cEEEEEcCCCC
Q 001989 647 FDS-FSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCII-PVSAHGTNPATAAMC---------G---MKIVSVGTDAK 712 (985)
Q Consensus 647 ~~~-~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv-~~~~Hg~~~~~a~~~---------G---~~vv~v~~d~~ 712 (985)
.+. ..|..+||++|++++++.+|.| +++.+||. ..++||....+.... + ..+..+|.+..
T Consensus 101 ~~~~~~f~~~sGseA~e~AlklAr~~------tgr~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~p~~~~ 174 (425)
T PRK09264 101 LDYKVQFTGPTGTNAVEAALKLARKV------TGRTNIVAFTNGFHGMTLGSLAVTGNSHKRQGAGVPLNNVTRMPYDGY 174 (425)
T ss_pred CCceEEEeCCCHHHHHHHHHHHHHHh------cCCCeEEEECCccCCccHHHHHhcCCcccccCCCCCCCCeEEeCCCCc
Confidence 322 2344589999999999999876 23456665 678999876554321 1 13455665321
Q ss_pred C---CCCHHHHHHHHHhcC---CCEEEEEEEcC-CCcccccc---CHHHHHHHHHHcCCEEEEEccccccccCCCCCCc-
Q 001989 713 G---NINIEELRKAAEANR---DNLSTLMVTYP-STHGVYEE---GIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGY- 781 (985)
Q Consensus 713 g---~iD~e~L~~~i~~~~---~~t~~Vvv~~p-n~~G~i~~---di~eI~~la~~~galliVD~a~~~~~~~l~~pg~- 781 (985)
. ..|++++++.+++++ +++++|+++-. +..|++.+ .+++|.++|+++|+++|+|++|. ++++.|.
T Consensus 175 ~~~~~~~~~~l~~~l~~~~~~~~~~aavi~Epv~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~t----G~GrtG~~ 250 (425)
T PRK09264 175 FGGDVDTLAYLEKLLEDSSSGVDLPAAVIVETVQGEGGINVASAEWLQRLAKLCRKHDILLIVDDIQA----GCGRTGTF 250 (425)
T ss_pred cccchhHHHHHHHHHHhccCCCCceEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCcEEEEechhh----CCccccHH
Confidence 1 137888999987532 35788887653 34565432 59999999999999999999873 2333331
Q ss_pred -------cCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHH
Q 001989 782 -------IGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILP 854 (985)
Q Consensus 782 -------~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~ 854 (985)
..+|+++++ |.++ .+|-.+|++++++++..+.+.. ..+++.|++..++
T Consensus 251 ~~~~~~~v~PDi~t~~--K~l~----~~G~pigav~~~~~i~~~~~~~-------------------~~~T~~gnp~~~a 305 (425)
T PRK09264 251 FSFERAGITPDIVTLS--KSIS----GYGLPMALVLIKPELDVWKPGE-------------------HNGTFRGNNLAFV 305 (425)
T ss_pred HHHhhcCCCCCEEEec--cccC----CCccceEEEEEchhhhccCCCc-------------------cCCCCCCCHHHHH
Confidence 347888764 8773 3243468888887653221110 0112334455555
Q ss_pred HHHHHH-HHhcHHHHHHHHHHHHHHHHHHHHHhhc---cCC-eeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHH
Q 001989 855 ISYTYI-AMMGSKGLTEASKIAILNANYMAKRLEK---HYP-ILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMD 929 (985)
Q Consensus 855 ~a~a~l-~~lg~eGl~~~~~~~~~~a~~l~~~L~~---g~~-l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~ 929 (985)
++.+.+ ..+..+.+ .++..++.++++++|++ .++ +.........+ +.+.+.. ......+.+.|.+
T Consensus 306 aa~a~l~~~~~~~~l---~~~~~~~g~~l~~~l~~l~~~~~~~~~~vrg~Gl~--~~i~l~~-----~~~~~~l~~~~~~ 375 (425)
T PRK09264 306 TATAALEEYWSDDAF---EKEVKAKGELVRERLEEIAAKYPGLGAEVRGRGMM--QGIDFGD-----GELAGKIAAEAFE 375 (425)
T ss_pred HHHHHHHHHHhhhHH---HHHHHHHHHHHHHHHHHHHHhCCCceecceecccE--EEEEecC-----hHHHHHHHHHHHH
Confidence 565666 44443333 44566777888877764 222 11111101112 2344431 1235678899999
Q ss_pred CCCccCCCCCCCCCEEEEeccCCCCHHHHHHHHccCChhHHHHhhc
Q 001989 930 YGFHGPTMSWPVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRLK 975 (985)
Q Consensus 930 ~Gi~~~~~~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~~ 975 (985)
+|+.+..... ..+.||++|+..+|++|||+ +++.|++++..+.
T Consensus 376 ~Gv~~~~~~~-~~~~lr~~p~l~~t~~ei~~--~~~~l~~~l~~~~ 418 (425)
T PRK09264 376 NGLIIETSGP-EDEVVKLLPPLTIDEEELEE--GLDILEEAVAEVL 418 (425)
T ss_pred CCCEEeccCC-CCCEEEEeCCCCCCHHHHHH--HHHHHHHHHHHHH
Confidence 9998754321 13799999999999999999 8899999887653
|
|
| >PRK07483 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=1e-14 Score=170.66 Aligned_cols=345 Identities=15% Similarity=0.141 Sum_probs=207.0
Q ss_pred cccccccccCCCccccccccccccccccCCCCchhhhhhHHHHHHHHHHHHHHHhCCC-ccceecCcHHHHHHHHHHHHH
Q 001989 591 MIPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFD-SFSLQPNAGAAGEYAGLMVIR 669 (985)
Q Consensus 591 ~~~lG~~t~~~~~~~~~~~~~~~~f~~~~p~~p~e~~~G~~~~~~e~~~~la~l~G~~-~~~~~~~sGa~a~~a~l~air 669 (985)
...||++++.+..+...+.... .+.+...+. .+...++.+.|++++.-. ...++.+||++|++++++.+|
T Consensus 41 ~~~lGh~~p~v~~av~~ql~~~-~~~~~~~~~--------~~~~~~lae~L~~~~p~~~~~v~f~~sGsEAve~AlklAr 111 (443)
T PRK07483 41 VSCLGHSHPRVIAAIHAQIDRL-AYAHTSFFT--------TEPAEALADRLVAAAPAGLEHVYFVSGGSEAVEAALKLAR 111 (443)
T ss_pred hhccCCCCHHHHHHHHHHHHhc-cCccccccC--------CHHHHHHHHHHHHhCCCCCCEEEEcCCcHHHHHHHHHHHH
Confidence 3468888887776655443221 111100011 122346778888887422 235678999999999999999
Q ss_pred HHHHhcCCCCCCEEEE-cCCCCcccHHHHHHCCc------------EEEEEcCCCCCC-C------------CHHHHHHH
Q 001989 670 AYHKARGDHHRNVCII-PVSAHGTNPATAAMCGM------------KIVSVGTDAKGN-I------------NIEELRKA 723 (985)
Q Consensus 670 ~~~~~~g~~~~~~IIv-~~~~Hg~~~~~a~~~G~------------~vv~v~~d~~g~-i------------D~e~L~~~ 723 (985)
.|...+|.+++.+||. ...+||....+....|- .+..++.....+ . .+++++++
T Consensus 112 ~~~~~~g~~~r~~Ii~~~~~YHG~t~~a~s~s~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 191 (443)
T PRK07483 112 QYFVEIGQPQRRHFIARRQSYHGNTLGALAIGGNAWRREPFAPLLIEAHHVSPCYAYREQRAGESDEAYGQRLADELEAK 191 (443)
T ss_pred HHHHhcCCCCCcEEEEECCCcCCcCHHHhhhcCCcccccccCCCCCCCEEeCCCccccccccCCCHHHHHHHHHHHHHHH
Confidence 8865555334567776 77899987655432211 123333211111 0 13567776
Q ss_pred HHh-cCCCEEEEEEEcCC--Ccccccc---CHHHHHHHHHHcCCEEEEEccccccccCCCCCCcc--------CCcEEEe
Q 001989 724 AEA-NRDNLSTLMVTYPS--THGVYEE---GIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYI--------GADVCHL 789 (985)
Q Consensus 724 i~~-~~~~t~~Vvv~~pn--~~G~i~~---di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~--------g~Di~~~ 789 (985)
+.+ +.+++++|+++-.- .-|++.+ -+++|.++|+++|+++|+|+++ .|+.++|.+ .+|++++
T Consensus 192 ~~~~~~~~iAAvivEPiqg~~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~----tGfGRtG~~~a~~~~gv~PDiv~~ 267 (443)
T PRK07483 192 ILELGPDTVAAFVAETVVGATAGAVPPVPGYFKRIREVCDRYGVLLILDEVM----CGMGRTGTLFACEEDGVAPDLVTI 267 (443)
T ss_pred HHhcCCCceEEEEEeCcccCcCCeEeCCHHHHHHHHHHHHHhCCEEEEecce----eCcccCcHHHHHhhcCCCCCeeee
Confidence 642 33678899887532 2366642 2899999999999999999886 345555533 2799877
Q ss_pred CCcccccccCCCCC-CceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHHH
Q 001989 790 NLHKTFCIPHGGGG-PGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGL 868 (985)
Q Consensus 790 s~hK~l~~p~g~GG-Pg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl 868 (985)
+ |.++ +|- | +|.+++++++.+.+.... + . ....+++.|+++.++++.+.|..+.++++
T Consensus 268 g--K~l~----gG~~P-i~av~~~~~i~~~~~~~~-~------------~-~~h~~T~~gnpl~~aaa~a~l~~i~~~~l 326 (443)
T PRK07483 268 A--KGLG----AGYQP-IGAVLASDRIYDAIADGS-G------------F-FQHGHTYLGHATACAAALAVQRVIAEDGL 326 (443)
T ss_pred h--hhhc----cCccc-cEEEEEcHHHHHHHhcCC-C------------c-cccCCCCCCCHHHHHHHHHHHHHHHhcCH
Confidence 4 7763 332 5 566666777655442110 0 0 01123456788888888899988877655
Q ss_pred HHHHHHHHHHHHHHHHHhhc---cCCee--ecCCCCceeeEEEEEecC-cccc--CC-CCHHHHHHHHHHCCCccCCCCC
Q 001989 869 TEASKIAILNANYMAKRLEK---HYPIL--FRGVNGTVAHEFIVDLRG-LKNT--AG-IEPEDVAKRLMDYGFHGPTMSW 939 (985)
Q Consensus 869 ~~~~~~~~~~a~~l~~~L~~---g~~l~--~~~~~~~~~~~~iv~~~~-~~~~--~g-~~~~~v~~~L~~~Gi~~~~~~~ 939 (985)
. ++..+..++|+++|++ .++++ +.+. + .+..+-+..+. .+.. .. .....+.+.+.++|+++.....
T Consensus 327 ~---~~~~~~g~~l~~~L~~l~~~~~~i~~vRG~-G-lm~gie~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gll~~~~~~ 401 (443)
T PRK07483 327 L---ANVRARGEQLRARLRERLGQHPHVGDIRGR-G-LFVGVELVADRATKAPFDPALKLHARIKREAMARGLMVYPMGG 401 (443)
T ss_pred H---HHHHHHHHHHHHHHHHHHhcCCCeeeEeec-c-cEEEEEEeecccccCCCCchhhHHHHHHHHHHHCCcEEEecCc
Confidence 4 4566777888888864 22321 1121 1 22112121110 0000 00 0135688888999998743211
Q ss_pred ----CCCCEEEEeccCCCCHHHHHHHHccCChhHHHHhhcc
Q 001989 940 ----PVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRLKM 976 (985)
Q Consensus 940 ----p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~~~ 976 (985)
+.++.+|+.|+...|++|||+ ++++|++++.++.+
T Consensus 402 ~~~~~~~~~l~~~PpL~it~~eid~--~~~~l~~~l~~~~~ 440 (443)
T PRK07483 402 TIDGVRGDHVLLAPPFIITAAQIDE--IVERLGDAIDAALA 440 (443)
T ss_pred cccCCCCCEEEEECCCCCCHHHHHH--HHHHHHHHHHHHHh
Confidence 123799999999999999999 88999999987654
|
|
| >PRK07480 putative aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.68 E-value=6e-15 Score=173.11 Aligned_cols=340 Identities=18% Similarity=0.201 Sum_probs=200.2
Q ss_pred ccccccccCCCccccccccccccccccCCCCchhhhhhHHHHHHHHHHHHHHHhCCCc-cceecCcHHHHHHHHHHHHHH
Q 001989 592 IPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFDS-FSLQPNAGAAGEYAGLMVIRA 670 (985)
Q Consensus 592 ~~lG~~t~~~~~~~~~~~~~~~~f~~~~p~~p~e~~~G~~~~~~e~~~~la~l~G~~~-~~~~~~sGa~a~~a~l~air~ 670 (985)
..+|++++.+..+...+........+.+-+ ..+...++.+.|+++++.+. ..++.+||++|++++++++|.
T Consensus 62 ~~lGh~~p~v~~Ai~~q~~~~~~~~~~~~~--------~~~~~~~lae~L~~~~p~~~~~v~f~~SGseA~e~AlklAr~ 133 (456)
T PRK07480 62 VNVGYGRKELADAAARQMRELPYYNTFFKT--------THPPAIELAAKLAEVAPPGFNHVFFTNSGSEANDTVLRMVRH 133 (456)
T ss_pred hcCCCCCHHHHHHHHHHHHhcCCccccccc--------CCHHHHHHHHHHHHhCCCCcCEEEEeCCcHHHHHHHHHHHHH
Confidence 457888777766655443222211111101 11234577888888875322 346789999999999999998
Q ss_pred HHHhcCCCCCCEEEE-cCCCCcccHHHHHHCCc------------EEEEEcCCCCC----CCC--------HHHHHHHHH
Q 001989 671 YHKARGDHHRNVCII-PVSAHGTNPATAAMCGM------------KIVSVGTDAKG----NIN--------IEELRKAAE 725 (985)
Q Consensus 671 ~~~~~g~~~~~~IIv-~~~~Hg~~~~~a~~~G~------------~vv~v~~d~~g----~iD--------~e~L~~~i~ 725 (985)
|...+|...+.+||. ..++||.........|. .+..++..... ..+ +++|++.+.
T Consensus 134 ~~~~~g~~~r~~ii~~~~~yHG~tl~a~s~~g~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~ 213 (456)
T PRK07480 134 YWALKGKPQKKVIISRKNGYHGSTVAGASLGGMKYMHEQGDLPIPGIVHIDQPYWFGEGGDMTPEEFGLAAARQLEAKIL 213 (456)
T ss_pred HHHhcCCCCCcEEEEECCCcCCcchhhhhccCChhhhcccCCCCCCCeecCCCcccccccCCChHHHHHHHHHHHHHHHH
Confidence 865555334566775 56799976443322111 12223321100 011 366665553
Q ss_pred -hcCCCEEEEEEEcC-CCccccccC---HHHHHHHHHHcCCEEEEEccccccccCCCCCCcc--------CCcEEEeCCc
Q 001989 726 -ANRDNLSTLMVTYP-STHGVYEEG---IDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYI--------GADVCHLNLH 792 (985)
Q Consensus 726 -~~~~~t~~Vvv~~p-n~~G~i~~d---i~eI~~la~~~galliVD~a~~~~~~~l~~pg~~--------g~Di~~~s~h 792 (985)
...+++++|+++-. ...|++.+| +++|.++|+++|+++|+|+++ .|+.+.|.+ -+|+++++
T Consensus 214 ~~~~~~vAAvi~EPiqg~gG~~~~~~~yl~~lr~lc~~~g~llI~DEV~----tGfGRtG~~~a~~~~gv~PDiv~~g-- 287 (456)
T PRK07480 214 ELGADNVAAFIGEPIQGAGGVIIPPATYWPEIQRICRKYDILLVADEVI----CGFGRTGEWFGSQHFGIKPDLMTIA-- 287 (456)
T ss_pred hcCCCcEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechh----hCCCcCcchhhhhhcCCCCCeeeee--
Confidence 23357888888753 345666522 899999999999999999886 344445433 26888764
Q ss_pred ccccccCCCCC-CceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHHHHHH
Q 001989 793 KTFCIPHGGGG-PGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEA 871 (985)
Q Consensus 793 K~l~~p~g~GG-Pg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl~~~ 871 (985)
|.++ +|- | +|.+++++++.+.+.... + .....+++.|+++.++++.+.|..+.++++.+
T Consensus 288 K~l~----gG~~P-i~av~~~~~i~~~~~~~~-~-------------~~~~~~T~~gnpl~~Aaa~a~L~~l~~~~l~~- 347 (456)
T PRK07480 288 KGLT----SGYIP-MGAVGVGDRVAEVLIEEG-G-------------EFNHGFTYSGHPVAAAVALANLRILRDEGIVE- 347 (456)
T ss_pred hhhc----cCCcc-ceEEEEcHHHHHHHhcCC-C-------------CcccCCCCCcCHHHHHHHHHHHHHHHhCCHHH-
Confidence 7763 231 5 455555766655441100 0 00112345668888888999999887766543
Q ss_pred HHHH-HHHHHHHHHHhhcc--CCee--ecCCCCceeeEEEEEec-CccccC-C--CCHHHHHHHHHHCCCccCCCCCCCC
Q 001989 872 SKIA-ILNANYMAKRLEKH--YPIL--FRGVNGTVAHEFIVDLR-GLKNTA-G--IEPEDVAKRLMDYGFHGPTMSWPVP 942 (985)
Q Consensus 872 ~~~~-~~~a~~l~~~L~~g--~~l~--~~~~~~~~~~~~iv~~~-~~~~~~-g--~~~~~v~~~L~~~Gi~~~~~~~p~~ 942 (985)
+. .++.++|.++|++. ..++ +.+. + .+..+.+.-+ ..+... . .....+.+++.++|+++... .
T Consensus 348 --~~~~~~g~~l~~~l~~l~~~~~i~~vrG~-G-lm~gie~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gll~~~~----~ 419 (456)
T PRK07480 348 --RVRDDTGPYLQKRLRELADHPLVGEVRGV-G-LVGAIELVKDKATRERFEAGGGVGTICRDHCFANGLIMRAV----G 419 (456)
T ss_pred --HHHHHHHHHHHHHHHHhhcCCCeeeEEee-c-ceEEEEEeccccccccCcchhhHHHHHHHHHHHCCcEEeec----C
Confidence 44 35667777777651 2221 1121 1 2212222111 000000 0 01246777888999988532 3
Q ss_pred CEEEEeccCCCCHHHHHHHHccCChhHHHHhhc
Q 001989 943 GTLMIEPTESESKSWTGIVMLSSPSEKKLHRLK 975 (985)
Q Consensus 943 ~~lris~t~~~t~eeId~~~~~~~l~~~~~~~~ 975 (985)
+.+|++|+...|++|||+ ++++|++++.+++
T Consensus 420 ~~l~~~Ppl~it~~eid~--~~~~l~~al~~~~ 450 (456)
T PRK07480 420 DRMIISPPLVITHAEIDE--LVEKARKALDATA 450 (456)
T ss_pred CEEEEECCCCCCHHHHHH--HHHHHHHHHHHHH
Confidence 689999999999999999 8899999988764
|
|
| >TIGR00474 selA seryl-tRNA(sec) selenium transferase | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.3e-14 Score=168.80 Aligned_cols=302 Identities=16% Similarity=0.172 Sum_probs=181.7
Q ss_pred CcHHHHHHHHhCCccccccCCChhhHh-hhHHHHHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEE
Q 001989 180 VPPVILRNIMENPAWYTQYTPYQAEIA-QGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTF 258 (985)
Q Consensus 180 ~p~~v~~~i~~~~~~~t~~~pyq~e~s-qg~l~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~V 258 (985)
+|+.+.+++.+ ++..|++...... ..+-..+.++++.+|+|+|++. +.+++++++++..++.++ .+||+|
T Consensus 93 l~~~vieAv~~---~~~~y~~l~~~l~~g~~g~r~~~le~~lA~l~gae~--alvv~sg~aAi~l~l~~l----~~GdeV 163 (454)
T TIGR00474 93 LAEEAIEAVTD---AARGYSNLEYDLETGKRGSRYSHVEGLLCELTGAED--ALVVNNNAAAVLLALNTL----AKGKEV 163 (454)
T ss_pred CCHHHHHHHHH---HHhcccchhccccccccchHHHHHHHHHHHHhCCCc--EEEECCHHHHHHHHHHHh----CCcCEE
Confidence 66666555543 3444442111111 1123456788899999999987 456788887665544332 289999
Q ss_pred EEcCCCChhH----HHHHHHhhcCCCeEEEEeCc------hhhhc-cCCCEeEEEEEcC-CC--Ce--eeccHHHHHHHH
Q 001989 259 IIASNCHPQT----IDICITRADGFDIKVVVSDL------KDIDY-KSGDVCGVLVQYP-GT--EG--EVLDYGDFIKNA 322 (985)
Q Consensus 259 lv~~~~H~s~----~~~~~~~a~~~gi~v~~v~~------~~l~~-l~~~t~~V~v~~p-n~--~G--~v~di~~I~~~a 322 (985)
|+++.+|+++ .-+. ..+..|+++++++. +++++ ++++|++|++.++ |+ .| .+.|+++|+++|
T Consensus 164 Ivs~~e~v~~ggs~~i~~--~~~~~G~~~~~v~~~~~~~l~dle~aI~~~T~lv~~~h~sN~~~~G~~~~~dl~~I~~la 241 (454)
T TIGR00474 164 IVSRGELVEIGGSFRIPD--VMEQSGAKLVEVGTTNRTHLKDYEDAITENTALLLKVHTSNYRIVGFTEEVSIAELVALG 241 (454)
T ss_pred EECCChhhhhcchhhHHH--HHHHcCCEEEEeCCCCCCCHHHHHHhcCcCCEEEEEEccCcccccCCCCCCCHHHHHHHH
Confidence 9999998543 2221 23457999999864 45666 8899999988775 54 46 578999999999
Q ss_pred HhCCcEEEEEecCcc-------ccC-----CCCCCcccceEEEecC-ccccccCCCCCCcEEEEEEchhhHhcCCCceee
Q 001989 323 HANGVKVVMATDLLA-------LTI-----LKPPGELGADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVG 389 (985)
Q Consensus 323 ~~~galliV~a~~~~-------lg~-----l~~~~~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG 389 (985)
|++|++++||. ... +|+ +..+.++|||++++|+ |+| |||++|++++++++++++...-++
T Consensus 242 ~~~g~~vivD~-~sG~l~~~~~~gl~~~p~~~~~~~~GaDiv~fSg~K~L------gGp~~G~i~g~~~~i~~l~~~~l~ 314 (454)
T TIGR00474 242 REHGLPVMEDL-GSGSLVDLSRYGLPDEPTVQEVIAAGVDLVTFSGDKLL------GGPQAGIIVGKKELIERLKKNPLT 314 (454)
T ss_pred HHcCCeEEEEC-CCcccccchhccCCCCcccccHhHcCCCEEEecCcccc------CCCeEEEEEECHHHHHhhhhchhH
Confidence 99999999953 110 111 1234579999999999 655 556789999999888776321111
Q ss_pred eeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHH--HH----HHhCcchHHH---HHHHHHHHHHHHHHH
Q 001989 390 VSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAM--YA----VYHGPEGLKT---IAQRVHGLAGTFALG 460 (985)
Q Consensus 390 ~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~--~l----~~~g~~Gl~~---i~~~~~~~a~~l~~~ 460 (985)
|. .|-.| -.+.++.+++ |+ ++..-.|++. ..+++.++|..+.+.
T Consensus 315 -----------------r~--lr~~k--------~~la~l~~~l~~~~~~~~a~~~~~~l~~l~~~~~~~~~~A~~la~~ 367 (454)
T TIGR00474 315 -----------------RA--LRVDK--------LTLAALEATLRLYLDPEKALEKIPTLRMLTQSPEELRARAERLAKR 367 (454)
T ss_pred -----------------HH--HhhCh--------HHHHHHHHHHHHHhCchhhhhhchHHHHhccCHHHHHHHHHHHHHH
Confidence 00 00011 0122222222 11 1222223332 234556677888888
Q ss_pred HhcC--CCe--EEcC-C--------C--CcceEE--EecCC--HHHHHHHHHHcCcee-eeecCCeEEEEeccCCCHHHH
Q 001989 461 LKKL--GTV--EVQG-L--------P--FFDTVK--VKCAD--AHAIASAAYKIEMNL-RVVDSNTVTASFDETTTLEDV 520 (985)
Q Consensus 461 L~~~--g~~--~~~~-~--------~--~~~~~~--~~~~~--~~~v~~~L~~~GI~~-~~~~~~~lris~t~~~t~edI 520 (985)
|++. .++ ++.. . | ..+.+. +...+ +.++.++|++....+ ..+..+.+.+-+-.. .++|+
T Consensus 368 L~~~~~~~~~~~~~~~~~~~ggg~~p~~~l~~~~v~~~~~~~~~~~l~~~lr~~~~~ii~r~~~~~~~ld~r~~-~~~~~ 446 (454)
T TIGR00474 368 LKAALGPGFELEIVPGLSQVGGGSLPDERLPSYAVTLTPDGLSAEKLEARLRELPPPIIGRIEDDRFLLDLRTL-LEDEE 446 (454)
T ss_pred HHhhccCCceEEEEEcCCcccCCCCcCCCCCeEEEEEecCCCCHHHHHHHHhcCCCCEEEEEECCEEEEEeCcC-CHHHH
Confidence 8763 123 3331 1 1 133444 44333 889999999765432 224456666655433 56788
Q ss_pred HHHHHHH
Q 001989 521 DKLFIVF 527 (985)
Q Consensus 521 d~li~aL 527 (985)
+.++++|
T Consensus 447 ~~~~~~~ 453 (454)
T TIGR00474 447 ELLIEAL 453 (454)
T ss_pred HHHHHHh
Confidence 8888776
|
In bacteria, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes SelA. This model excludes homologs that appear to differ in function from Frankia alni, Helicobacter pylori, Methanococcus jannaschii and other archaea, and so on. |
| >PLN02482 glutamate-1-semialdehyde 2,1-aminomutase | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.5e-15 Score=175.12 Aligned_cols=323 Identities=15% Similarity=0.154 Sum_probs=194.6
Q ss_pred ccccccccCCCccccccccccccccccCCCCchhhhhhHHHHHHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHH
Q 001989 592 IPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAY 671 (985)
Q Consensus 592 ~~lG~~t~~~~~~~~~~~~~~~~f~~~~p~~p~e~~~G~~~~~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~ 671 (985)
..||++++.+..+...+...-..+ .++. +...++.+++++.+..-...++.+||++|++++++.+|.|
T Consensus 111 ~~lGh~~p~v~~av~~ql~~~~~~--~~~~----------~~~~~lAe~l~~~~p~~~~v~f~~SGsEA~e~AlklAR~~ 178 (474)
T PLN02482 111 AIIGHADDEVLAALAETMKKGTSF--GAPC----------LLENVLAEMVIDAVPSVEMVRFVNSGTEACMGVLRLARAY 178 (474)
T ss_pred cccCCCCHHHHHHHHHHHhhCCCC--CCCC----------HHHHHHHHHHHHhCCCCCEEEEeCChHHHHHHHHHHHHHh
Confidence 457888777766655544221122 1121 1234677888888743233467799999999999999886
Q ss_pred HHhcCCCCCCEEEE-cCCCCcccHHHHHH-------------CCc------EEEEEcCCCCCCCCHHHHHHHHHhcCCCE
Q 001989 672 HKARGDHHRNVCII-PVSAHGTNPATAAM-------------CGM------KIVSVGTDAKGNINIEELRKAAEANRDNL 731 (985)
Q Consensus 672 ~~~~g~~~~~~IIv-~~~~Hg~~~~~a~~-------------~G~------~vv~v~~d~~g~iD~e~L~~~i~~~~~~t 731 (985)
+++++||. ...+||.+...... .|+ .+..+|. .|+++|++.++++.+++
T Consensus 179 ------tgr~~Ii~~~g~YHG~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-----nd~~~l~~~l~~~~~~i 247 (474)
T PLN02482 179 ------TGREKIIKFEGCYHGHADSFLVKAGSGVATLGLPDSPGVPKAATSATLTAPY-----NDLEAVKKLFEANKGEI 247 (474)
T ss_pred ------cCCCEEEEECCccCCCcchhhhhcCCCccccCCCCCCCCCCCCCCCeEEecC-----CChHHHHHHHHhCCCce
Confidence 34567775 66799965332111 111 1233343 38999999998665678
Q ss_pred EEEEEEcC-CCccccccC---HHHHHHHHHHcCCEEEEEccccccccCCCCC---Ccc--CCcEEEeCCcccccccCCCC
Q 001989 732 STLMVTYP-STHGVYEEG---IDEICKIIHDNGGQVYMDGANMNAQVGLTSP---GYI--GADVCHLNLHKTFCIPHGGG 802 (985)
Q Consensus 732 ~~Vvv~~p-n~~G~i~~d---i~eI~~la~~~galliVD~a~~~~~~~l~~p---g~~--g~Di~~~s~hK~l~~p~g~G 802 (985)
++|+++-. +..|.+.++ +++|.++|+++|+++|+|+++. +. ..... ..+ .+|++++ .|.+ ++|
T Consensus 248 AavI~Epv~g~~G~i~p~~~fl~~lr~lc~~~g~lLI~DEV~t-Gf-R~g~~ga~~~~gv~PDi~t~--gK~l----ggG 319 (474)
T PLN02482 248 AAVILEPVVGNSGFIVPKKEFLEGLREITKENGALLVFDEVMT-GF-RIAYGGAQEYFGITPDLTTL--GKVI----GGG 319 (474)
T ss_pred EEEEECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecccc-Ce-ecCcchHhHHhCCCCCEEEe--cchh----hCC
Confidence 88877653 456776522 6789999999999999999873 22 11111 112 3788765 3776 334
Q ss_pred CCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHH
Q 001989 803 GPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYM 882 (985)
Q Consensus 803 GPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l 882 (985)
-| +|.+++++++.+.+... + .....+++.|+++.++++.+.|..+..++ ..++..++.++|
T Consensus 320 ~P-igav~g~~ei~~~~~~~--~-------------~~~~~~T~~gnpl~~aAala~L~~l~~~~---~~~~~~~~g~~l 380 (474)
T PLN02482 320 LP-VGAYGGRREIMEMVAPA--G-------------PMYQAGTLSGNPLAMTAGIHTLKRLQQPG---TYEYLDKITKKL 380 (474)
T ss_pred Cc-eEEEEEcHHHHHhhccC--C-------------CcccccCcchhHHHHHHHHHHHHHHhccC---HHHHHHHHHHHH
Confidence 45 45557787776655311 0 00112345567788888888898886554 345667788899
Q ss_pred HHHhhcc-----CCeeecCCCCceeeEEEEEecCcc---ccCCCC---HHHHHHHHHHCCCccCCCCCCCCCEEEEeccC
Q 001989 883 AKRLEKH-----YPILFRGVNGTVAHEFIVDLRGLK---NTAGIE---PEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTE 951 (985)
Q Consensus 883 ~~~L~~g-----~~l~~~~~~~~~~~~~iv~~~~~~---~~~g~~---~~~v~~~L~~~Gi~~~~~~~p~~~~lris~t~ 951 (985)
+++|++. +.+...+. +..+. +.+...... .....+ ...+.+.|.++|+++....++. + .|+.
T Consensus 381 ~~~L~~l~~~~g~~~~~~~v-~g~~g-i~f~~~~~~~~~~~~~~d~~~~~~~~~~l~~~Gv~~~~~~~~~----~-~psl 453 (474)
T PLN02482 381 IQGILEAGKKAGHEMCGGYI-SGMFG-FFFTEGPVYNFADAKKSDTAKFARFHRGMLEEGVYLAPSQFEA----G-FTSL 453 (474)
T ss_pred HHHHHHHHHhcCCCEEEccc-ceEEE-EEEecCCccChhhhccCCHHHHHHHHHHHHHCCeEEeccCCCC----C-cCCC
Confidence 9888752 22221111 12111 111110000 000001 3467888899999986544332 1 3788
Q ss_pred CCCHHHHHHHHccCChhHHHHh
Q 001989 952 SESKSWTGIVMLSSPSEKKLHR 973 (985)
Q Consensus 952 ~~t~eeId~~~~~~~l~~~~~~ 973 (985)
.+|++|||+ +++++++++.+
T Consensus 454 ~ht~~dId~--~l~al~~~l~~ 473 (474)
T PLN02482 454 AHTEEDIDF--TIAAAERVLAR 473 (474)
T ss_pred CCCHHHHHH--HHHHHHHHHHh
Confidence 899999999 88899888765
|
|
| >PRK12414 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=5.3e-15 Score=170.96 Aligned_cols=323 Identities=11% Similarity=0.114 Sum_probs=193.8
Q ss_pred cccccccccCCCcccccccccccccc-ccCCCCchhhhhhHHHHHHHHHHHHHHHhCCCc---cc-eecCcHHHHHHHHH
Q 001989 591 MIPLGSCTMKLNATTEMMPVTWPSFA-NIHPFAPADQAQGYQEMFNNLGEWLCTITGFDS---FS-LQPNAGAAGEYAGL 665 (985)
Q Consensus 591 ~~~lG~~t~~~~~~~~~~~~~~~~f~-~~~p~~p~e~~~G~~~~~~e~~~~la~l~G~~~---~~-~~~~sGa~a~~a~l 665 (985)
++.|+.+.+.+++..+.......... ....|.| .+|..++.+++++++++++|.+. .+ +..++|++|...++
T Consensus 31 ~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~Y~~---~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~it~g~~~al~~~~ 107 (384)
T PRK12414 31 ALNLSQGAPNFAPDPALVEGVARAMRDGHNQYAP---MAGIAALREALAEKTERLYGARYDPASEVTVIASASEGLYAAI 107 (384)
T ss_pred eEEcCCCCCCCCCCHHHHHHHHHHHHhCCCCcCC---CCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEECChHHHHHHHH
Confidence 56777766665543322221100000 1123433 46888888899999999999752 23 44455555553333
Q ss_pred HHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcCCC-CCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCcc
Q 001989 666 MVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDA-KGNINIEELRKAAEANRDNLSTLMVTYP-STHG 743 (985)
Q Consensus 666 ~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~d~-~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G 743 (985)
+.+. .++|+|+++++.|..+...++..|.+++.+|+++ ++.+|+++|+++++ +++++|++++| |++|
T Consensus 108 ---~~l~-----~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~---~~~~~v~i~~p~NPTG 176 (384)
T PRK12414 108 ---SALV-----HPGDEVIYFEPSFDSYAPIVRLQGATPVAIKLSPEDFRVNWDEVAAAIT---PRTRMIIVNTPHNPSA 176 (384)
T ss_pred ---HHhc-----CCCCEEEEeCCCccchHHHHHHcCCEEEEEecCccccccCHHHHHhhcC---cccEEEEEcCCCCCCC
Confidence 3321 4789999999888777777788999999999874 46799999999997 78999999998 5799
Q ss_pred ccc--cCHHHHHHHHHHcCCEEEEEccccccc-cC-CCCC-Cc----cCCcEEEeCCcccccccCCCCCCceEEEEEccc
Q 001989 744 VYE--EGIDEICKIIHDNGGQVYMDGANMNAQ-VG-LTSP-GY----IGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKH 814 (985)
Q Consensus 744 ~i~--~di~eI~~la~~~galliVD~a~~~~~-~~-l~~p-g~----~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~ 814 (985)
.+. .++++|+++|+++|+++++|+++..-. .+ ...+ .. .+--+++.|++|.|++| |.++|+++++++
T Consensus 177 ~~~s~~~~~~i~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~~~p----GlRiG~~v~~~~ 252 (384)
T PRK12414 177 TVFSAADLARLAQLTRNTDIVILSDEVYEHVVFDGARHHSMARHRELAERSVIVSSFGKSYHVT----GWRVGYCLAPAE 252 (384)
T ss_pred cCCCHHHHHHHHHHHHHCCeEEEEhhhhhhccCCCCCccCcccCcCccCcEEEEecccccccCc----cceEEEEecCHH
Confidence 873 268999999999999999999874211 11 0001 11 11237788899988654 678999999877
Q ss_pred ccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCee
Q 001989 815 LAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPIL 893 (985)
Q Consensus 815 l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~ 893 (985)
+...+.... .....+.+...+. ++..+|.. + +.+.+..+...++++++.+.|++ ++.+
T Consensus 253 l~~~l~~~~--------------~~~~~~~s~~~q~----a~~~~l~~-~-~~~~~~~~~~~~~r~~l~~~L~~~g~~~- 311 (384)
T PRK12414 253 LMDEIRKVH--------------QFMVFSADTPMQH----AFAEALAE-P-ASYLGLGAFYQRKRDLLARELAGSRFEL- 311 (384)
T ss_pred HHHHHHHHH--------------hheecCCCcHHHH----HHHHHhcC-C-hHHHHHHHHHHHHHHHHHHHHHhCCCee-
Confidence 654432110 0001111111121 11122221 1 22333444566778888888887 4333
Q ss_pred ecCCCCceeeEEEEEecCccccCCCCHHHHH-HHHHHCCCccCCC-CCC---C-CCEEEEeccCCCCHHHHHH
Q 001989 894 FRGVNGTVAHEFIVDLRGLKNTAGIEPEDVA-KRLMDYGFHGPTM-SWP---V-PGTLMIEPTESESKSWTGI 960 (985)
Q Consensus 894 ~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~-~~L~~~Gi~~~~~-~~p---~-~~~lris~t~~~t~eeId~ 960 (985)
. .+.+.++ +.++++.. .+....+++ +.|.++||.+... .|. . .+++||++.. ++++++.
T Consensus 312 ~-~~~gg~~--~~~~~~~~---~~~~~~~~~~~~l~~~gV~v~pg~~f~~~~~~~~~iRis~~~--~~~~~~~ 376 (384)
T PRK12414 312 L-PSEGSFF--MLARFRHF---SDESDSDFVLRLIRDARVATIPLSAFYTDGTDTGLIRLSFSK--DDATLVE 376 (384)
T ss_pred c-CCCcceE--EEEccccc---CCCCHHHHHHHHHHhCCEEEecchhhcCCCCCCCEEEEEecC--CHHHHHH
Confidence 2 2223332 23454311 012345566 5566789986542 231 1 4689999984 5777777
|
|
| >PLN00144 acetylornithine transaminase | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.1e-14 Score=167.86 Aligned_cols=321 Identities=16% Similarity=0.171 Sum_probs=197.2
Q ss_pred ccccccccCCCccccccccccccccccCCCCchhhhhhHHHHHHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHH
Q 001989 592 IPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAY 671 (985)
Q Consensus 592 ~~lG~~t~~~~~~~~~~~~~~~~f~~~~p~~p~e~~~G~~~~~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~ 671 (985)
..||++++.+..+...+......+...+. . +...++.+.|+++++.+ ..++.+||++|++++++.+|.|
T Consensus 27 ~~lGh~~p~v~~ai~~q~~~~~~~~~~~~-~---------~~~~~la~~l~~~~~~~-~v~f~~sGseA~e~AlklAr~~ 95 (382)
T PLN00144 27 NALGHGDPDWVKAVAEQAGTLAHVSNVYH-T---------IPQVELAKRLVASSFAD-RVFFCNSGTEANEAAIKFARKY 95 (382)
T ss_pred ccCCCCCHHHHHHHHHHHHhcCCcccccc-C---------HHHHHHHHHHHhcCCCC-eEEEeCCcHHHHHHHHHHHHHH
Confidence 35788877776655444322222221111 1 12346777888877654 3567899999999999999987
Q ss_pred HHhcCCCC-------CCEEEE-cCCCCcccHHHHHHCCc------------EEEEEcCCCCCCCCHHHHHHHHHhcCCCE
Q 001989 672 HKARGDHH-------RNVCII-PVSAHGTNPATAAMCGM------------KIVSVGTDAKGNINIEELRKAAEANRDNL 731 (985)
Q Consensus 672 ~~~~g~~~-------~~~IIv-~~~~Hg~~~~~a~~~G~------------~vv~v~~d~~g~iD~e~L~~~i~~~~~~t 731 (985)
...++..+ +.+||. ...+||....+....+- .+..+|. .|+++|++.+. ++++
T Consensus 96 ~~~~~~~~~~~~~~~r~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~l~~~~~--~~~~ 168 (382)
T PLN00144 96 QRVRAPDKKDPAASSATEFVSFSNSFHGRTLGALALTSKEQYRTPFEPLMPGVTFVEY-----GNLEAARKLIQ--KGKT 168 (382)
T ss_pred HhccCCCCccccccccceEEEECCCcccccHHHHhcCCCccccccCCCCCCCeEEeCC-----CCHHHHHHhcC--CCCe
Confidence 53332111 356665 67899987665443221 1334444 38999999885 2567
Q ss_pred EEEEEEcC-CCccccc-cC--HHHHHHHHHHcCCEEEEEccccccccCCCCC-----CccCCcEEEeCCcccccccCCCC
Q 001989 732 STLMVTYP-STHGVYE-EG--IDEICKIIHDNGGQVYMDGANMNAQVGLTSP-----GYIGADVCHLNLHKTFCIPHGGG 802 (985)
Q Consensus 732 ~~Vvv~~p-n~~G~i~-~d--i~eI~~la~~~galliVD~a~~~~~~~l~~p-----g~~g~Di~~~s~hK~l~~p~g~G 802 (985)
++|+++-. +..|++. ++ +++|.++|+++|+++|+|+++. +++-...+ ....+|++++ .|.++ +
T Consensus 169 aavi~eP~q~~gg~~~~~~~~~~~l~~l~~~~g~llI~DEv~t-g~gr~g~~~~~~~~~~~PDi~t~--sK~l~-----~ 240 (382)
T PLN00144 169 AAVFVEPVQGEGGIYPATKEFLQGLRALCDEAGALLVFDEVQC-GLGRTGYLWAHEAYGVEPDIMTL--AKPLA-----G 240 (382)
T ss_pred EEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhh-CCCccchHhhhhhcCCCCCEEEe--ccccc-----C
Confidence 77777532 3444543 24 8999999999999999999873 22111111 1224687766 48874 3
Q ss_pred CCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHH
Q 001989 803 GPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYM 882 (985)
Q Consensus 803 GPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l 882 (985)
|-.+|++++++++.+.+.... ..+++.++++.++++.+.|..+..+.+.+ +.....+++
T Consensus 241 G~pig~v~~~~~~~~~~~~~~------------------~~~T~~~~pl~~aaa~a~l~~i~~~~~~~---~~~~~g~~l 299 (382)
T PLN00144 241 GLPIGAVLVTEKVASAINPGD------------------HGSTFAGGPLVCNAALAVLDKISKPGFLA---SVAKKGEYL 299 (382)
T ss_pred CcceEEEEEcHHHHhccCCCC------------------CCCCCCCCHHHHHHHHHHHHHHhhchHHH---HHHHHHHHH
Confidence 445888888887766553210 01123345666777777788876555543 445555666
Q ss_pred HHHhhc---cCCee--ecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCCCCCCCEEEEeccCCCCHHH
Q 001989 883 AKRLEK---HYPIL--FRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKSW 957 (985)
Q Consensus 883 ~~~L~~---g~~l~--~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~~p~~~~lris~t~~~t~ee 957 (985)
.+.|++ ..+.. +.+ .+ .+ +.+.+. .+...+.+++.++|+.+..... .+.||++|+...|++|
T Consensus 300 ~~~l~~~~~~~~~~~~vrg-~G-~~--~~l~l~-------~~~~~~~~~~~~~Gv~i~~~~~--~~~lrl~p~~~~~~~~ 366 (382)
T PLN00144 300 RELLRRKLGGNPHVKEVRG-VG-LL--VGIQLD-------VPAGPLVDACRDSGLLVLTAGK--GDVVRLVPPLVISEAE 366 (382)
T ss_pred HHHHHHHHhhCCCceeeec-Cc-eE--EEEEec-------CccHHHHHHHHHCCeEEeecCC--CCEEEEeCCCccCHHH
Confidence 665543 12211 112 12 22 223332 2356789999999998754321 3799999999899999
Q ss_pred HHHHHccCChhHHHHhh
Q 001989 958 TGIVMLSSPSEKKLHRL 974 (985)
Q Consensus 958 Id~~~~~~~l~~~~~~~ 974 (985)
|+. ++++|++++.++
T Consensus 367 i~~--~~~~l~~~l~~~ 381 (382)
T PLN00144 367 LEQ--AVEILADCLPAL 381 (382)
T ss_pred HHH--HHHHHHHHHHhc
Confidence 999 888888888653
|
|
| >PRK04635 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=2e-15 Score=172.51 Aligned_cols=280 Identities=14% Similarity=0.089 Sum_probs=179.4
Q ss_pred HHHHHHHHHHhCCCccceecCcHHH-HHHHHHHHHHHHHHhcCCCCC-CEEEEcCCCCcccHHHHHHCCcEEEEEcCCCC
Q 001989 635 NNLGEWLCTITGFDSFSLQPNAGAA-GEYAGLMVIRAYHKARGDHHR-NVCIIPVSAHGTNPATAAMCGMKIVSVGTDAK 712 (985)
Q Consensus 635 ~e~~~~la~l~G~~~~~~~~~sGa~-a~~a~l~air~~~~~~g~~~~-~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~d~~ 712 (985)
.++++.+++.+|.+..++..+.|++ +. .++++.+. .++ ++|+++++.+..+...++..|++++.+|++.+
T Consensus 63 ~~Lr~aia~~~~~~~~~I~it~Gs~~~i---~~~~~~~~-----~~g~d~vlv~~P~y~~y~~~~~~~g~~v~~v~~~~~ 134 (354)
T PRK04635 63 PELINAYSAYAGVAPEQILTSRGADEAI---ELLIRAFC-----EPGQDSIACFGPTYGMYAISAETFNVGVKALPLTAD 134 (354)
T ss_pred HHHHHHHHHHhCcCHHHEEEeCCHHHHH---HHHHHHhc-----CCCCCeEEEcCCChHHHHHHHHHcCCEEEEEecCCC
Confidence 3678889999999887766666654 43 33333331 245 78999888666666667889999999999877
Q ss_pred CCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccCHHHHHHHHHHc-CCEEEEEccccccccCCCCC----CccCCcE
Q 001989 713 GNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDN-GGQVYMDGANMNAQVGLTSP----GYIGADV 786 (985)
Q Consensus 713 g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~-galliVD~a~~~~~~~l~~p----g~~g~Di 786 (985)
+.+|++.++ .+ +++++|++++| |++|.+. +.+++.++++.. ++++++|+++.. ....... ....-=+
T Consensus 135 ~~~~~~~l~-~~----~~~~li~i~nP~NPTG~~~-~~~~l~~l~~~~~~~~vivDeay~~-~~~~~s~~~~~~~~~~~i 207 (354)
T PRK04635 135 YQLPLDYIE-QL----DGAKLVFICNPNNPTGTVI-DRADIEQLIEMTPDAIVVVDEAYIE-FCPEYSVADLLASYPNLV 207 (354)
T ss_pred CCCCHHHHH-hc----cCCCEEEEeCCCCCCCccC-CHHHHHHHHHhCCCcEEEEeCchHh-hccCcchHHHHhhCCCEE
Confidence 889999887 33 57899999999 4799998 889999998764 799999998732 1110000 0111114
Q ss_pred EEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHH
Q 001989 787 CHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSK 866 (985)
Q Consensus 787 ~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~e 866 (985)
++.|++|+|+.| |.++|++++++++.+.+.... ...++++ ....++.+++...+.+
T Consensus 208 v~~S~SK~~~l~----GlRlG~~i~~~~~~~~l~~~~--------------~~~~~~~------~~~~~a~~~l~~~~~~ 263 (354)
T PRK04635 208 VLRTLSKAFALA----GARCGFTLANEELIEILMRVI--------------APYPVPL------PVSEIATQALSEAGLA 263 (354)
T ss_pred EEechHHHhhhh----HHHHhhhhCCHHHHHHHHhhc--------------CCCCCCH------HHHHHHHHHHhcccHH
Confidence 677889988543 678999998877665442110 0001111 1112223334332333
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCC-CCCCCEE
Q 001989 867 GLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMS-WPVPGTL 945 (985)
Q Consensus 867 Gl~~~~~~~~~~a~~l~~~L~~g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~-~p~~~~l 945 (985)
-+++..+...++++++.+.|++...+.+.++.+. + +.++++ +..++.+.|.++||.+.... ...++++
T Consensus 264 ~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~g~-f--~~~~~~--------~~~~~~~~l~~~gv~v~~~~~~~~~~~l 332 (354)
T PRK04635 264 RMKFQVLDLNAQGARLQAALSMYGGAKVLEGNGN-Y--VLAKFD--------DVDAVFKALWDAGIVARAYKDPRLANCI 332 (354)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCceECCCCCc-E--EEEECC--------CHHHHHHHHHHCCEEEEECCCCCCCCeE
Confidence 3444445566777888899986211222222232 2 334443 46788889999999875433 2235799
Q ss_pred EEeccCCCCHHHHHHHHccCChhH
Q 001989 946 MIEPTESESKSWTGIVMLSSPSEK 969 (985)
Q Consensus 946 ris~t~~~t~eeId~~~~~~~l~~ 969 (985)
||++ .+.+|+++ ++++|++
T Consensus 333 Ris~---~~~e~~~~--l~~al~~ 351 (354)
T PRK04635 333 RFSF---SNRAETDK--LIGLIRN 351 (354)
T ss_pred EEEe---CCHHHHHH--HHHHHHH
Confidence 9997 68999999 6666653
|
|
| >TIGR00707 argD acetylornithine and succinylornithine aminotransferases | Back alignment and domain information |
|---|
Probab=99.68 E-value=6.1e-15 Score=170.16 Aligned_cols=290 Identities=20% Similarity=0.190 Sum_probs=177.2
Q ss_pred HHHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcC-CCCcccHHHHHHCCcEE---EEEc
Q 001989 633 MFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPV-SAHGTNPATAAMCGMKI---VSVG 708 (985)
Q Consensus 633 ~~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~-~~Hg~~~~~a~~~G~~v---v~v~ 708 (985)
...++++.+++++|.+ ..+..+||+++++.++.+++.+...++ .++++|++++ .+|+.........+-.. ...+
T Consensus 70 ~~~~l~~~la~~~g~~-~~~~~~sg~~a~~~a~~~~~~~~~~~~-~~~~~vi~~~~~yh~~~~~~~~~~~~~~~~~~~~~ 147 (379)
T TIGR00707 70 PQEELAEKLVEHSGAD-RVFFCNSGAEANEAALKLARKYTGDKG-KEKKKIIAFENSFHGRTMGALSATGQPKYQKGFEP 147 (379)
T ss_pred HHHHHHHHHHhhCCCC-EEEEeCCcHHHHHHHHHHHHHHhhccC-CCCCeEEEECCCcCCccHHHHHhcCChhhhccCCC
Confidence 3568899999999987 346678899988877777765432122 1357888754 56665444322211110 0112
Q ss_pred CCCCC----CCCHHHHHHHHHhcCCCEEEEEEEcCC-Cccccc---cCHHHHHHHHHHcCCEEEEEccccccccCCCC--
Q 001989 709 TDAKG----NINIEELRKAAEANRDNLSTLMVTYPS-THGVYE---EGIDEICKIIHDNGGQVYMDGANMNAQVGLTS-- 778 (985)
Q Consensus 709 ~d~~g----~iD~e~L~~~i~~~~~~t~~Vvv~~pn-~~G~i~---~di~eI~~la~~~galliVD~a~~~~~~~l~~-- 778 (985)
...+. ..|+++|+++++ +++++|+++.++ ++|++. .++++|.++|+++|+++++|+++. +++.-..
T Consensus 148 ~~~~~~~~~~~d~~~l~~~~~---~~~~~v~~~p~~~~~g~~~~~~~~l~~i~~l~~~~~~~~i~De~~~-~~~~~g~~~ 223 (379)
T TIGR00707 148 LVPGFSYAPYNDIESLKKAID---DETAAVIVEPIQGEGGVNPASAEFLKALREICKDKDALLIFDEVQT-GIGRTGKFF 223 (379)
T ss_pred CCCCceeeCCCCHHHHHHHhh---hCeeEEEEEccccCCCCccCCHHHHHHHHHHHHHcCCEEEEecccc-CCCccchhh
Confidence 21111 128999999997 688999997654 466542 248999999999999999999984 2211000
Q ss_pred C-C--ccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHH
Q 001989 779 P-G--YIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPI 855 (985)
Q Consensus 779 p-g--~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~ 855 (985)
+ . ....|++++ +|+|+ +|.++|++++++++.+.+..... . ...+ +++..+.+
T Consensus 224 ~~~~~~~~~d~~t~--sK~~~-----~G~riG~~~~~~~~~~~~~~~~~-------------~-~~~~----~~~~~~~a 278 (379)
T TIGR00707 224 AYEHYGIEPDIITL--AKGLG-----GGVPIGATLAKEEVAEAFTPGDH-------------G-STFG----GNPLACAA 278 (379)
T ss_pred hHHhcCCCCCEEEE--ccccc-----CCcccEEEEEcHHHHhhhcCCCC-------------C-CCCC----CCHHHHHH
Confidence 1 1 123577654 58874 45779999988777655432100 0 0111 12344445
Q ss_pred HHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeec-CCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCc
Q 001989 856 SYTYIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFR-GVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFH 933 (985)
Q Consensus 856 a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~-~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~ 933 (985)
+++.|..+... +..++..+++++++++|++ +...... .+.... .+.+.++ .+..++.++|.++||.
T Consensus 279 a~aaL~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~--~~~~~~~-------~~~~~~~~~l~~~Gv~ 346 (379)
T TIGR00707 279 ALAVLEVIEKE---RLLENVKEKGDYFKERLEELGKNYPNKEVRGKGL--MLGIELE-------APCKDIVKKALEKGLL 346 (379)
T ss_pred HHHHHHHHHhh---hHHHHHHHHHHHHHHHHHHHHhhCCCCccccCce--EEEEEec-------CcHHHHHHHHHHCCcE
Confidence 55666655433 2345666778888888875 3222111 000111 1334443 1467899999999998
Q ss_pred cCCCCCCCCCEEEEeccCCCCHHHHHHHHccCChhHH
Q 001989 934 GPTMSWPVPGTLMIEPTESESKSWTGIVMLSSPSEKK 970 (985)
Q Consensus 934 ~~~~~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~ 970 (985)
+.... .+.+|++++..+|++||++ +++.|+++
T Consensus 347 v~~~~---~~~lRi~~~~~~t~~~i~~--~~~~l~~~ 378 (379)
T TIGR00707 347 VNCAG---PKVLRFLPPLIITKEEIDE--AVSALEEA 378 (379)
T ss_pred EeeCC---CCEEEEECCCcCCHHHHHH--HHHHHHHh
Confidence 75432 3789999999999999999 66777654
|
Members of this family may also act on ornithine, like ornithine aminotransferase (EC 2.6.1.13) (see MEDLINE:90337349) and on succinyldiaminopimelate, like N-succinyldiaminopmelate-aminotransferase (EC 2.6.1.17, DapC, an enzyme of lysine biosynthesis) (see MEDLINE:99175097) |
| >PRK09792 4-aminobutyrate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.1e-14 Score=169.72 Aligned_cols=329 Identities=12% Similarity=0.133 Sum_probs=196.5
Q ss_pred ccccccccCCCccccccccccccccccCCCCchhhhhhHHHHHHHHHHHHHHHhCCC--ccceecCcHHHHHHHHHHHHH
Q 001989 592 IPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFD--SFSLQPNAGAAGEYAGLMVIR 669 (985)
Q Consensus 592 ~~lG~~t~~~~~~~~~~~~~~~~f~~~~p~~p~e~~~G~~~~~~e~~~~la~l~G~~--~~~~~~~sGa~a~~a~l~air 669 (985)
..||++++.+..+...+..... +..+..+. .+...++.+.+++++... ...++.+||++|++++++.+|
T Consensus 52 ~~lGh~~p~v~~ai~~ql~~~~-~~~~~~~~--------~~~~~~la~~l~~~~p~~~~~~~~f~~sGseA~e~AlklAr 122 (421)
T PRK09792 52 LNTGHRHPDLVAAVEQQLQQFT-HTAYQIVP--------YESYVTLAEKINALAPVSGQAKTAFFTTGAEAVENAVKIAR 122 (421)
T ss_pred hcCCCCCHHHHHHHHHHHHhcc-CcccCccC--------CHHHHHHHHHHHHhCCCCCCceEEEeCChHHHHHHHHHHHH
Confidence 4588887777766555432211 11110011 112346777888877432 234667899999999999988
Q ss_pred HHHHhcCCCCCCEEEE-cCCCCcccHHHHHHCCc-------------EEEEEcCCCC--C---CCCHHHHHHHHHhc--C
Q 001989 670 AYHKARGDHHRNVCII-PVSAHGTNPATAAMCGM-------------KIVSVGTDAK--G---NINIEELRKAAEAN--R 728 (985)
Q Consensus 670 ~~~~~~g~~~~~~IIv-~~~~Hg~~~~~a~~~G~-------------~vv~v~~d~~--g---~iD~e~L~~~i~~~--~ 728 (985)
.| +++.+||. ...+||....+....|. .+..+|+..+ + ..|++++++.++++ .
T Consensus 123 ~~------tgr~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~v~~p~~~~~~~~~~~~~~l~~~~~~~~~~ 196 (421)
T PRK09792 123 AH------TGRPGVIAFSGGFHGRTYMTMALTGKVAPYKIGFGPFPGSVYHVPYPSDLHGISTQDSLDAIERLFKSDIEA 196 (421)
T ss_pred Hh------cCCCeEEEECCCcCCccHHHHhhcCCCcccccCCCCCCCCcEEcCCCcccccccHHHHHHHHHHHHHhccCC
Confidence 75 24456665 66799987655432221 1334444211 1 12457888888632 3
Q ss_pred CCEEEEEEEcC-CCccccccC---HHHHHHHHHHcCCEEEEEccccccccCCCCCC------cc--CCcEEEeCCccccc
Q 001989 729 DNLSTLMVTYP-STHGVYEEG---IDEICKIIHDNGGQVYMDGANMNAQVGLTSPG------YI--GADVCHLNLHKTFC 796 (985)
Q Consensus 729 ~~t~~Vvv~~p-n~~G~i~~d---i~eI~~la~~~galliVD~a~~~~~~~l~~pg------~~--g~Di~~~s~hK~l~ 796 (985)
+++++|+++-. +..|+..++ +++|.++|+++|+++|+|+++. ++.+.+ .+ .+|++++ .|+++
T Consensus 197 ~~iaavi~EPvq~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~t----g~gr~G~~~a~~~~~~~pDi~t~--gK~l~ 270 (421)
T PRK09792 197 KQVAAIIFEPVQGEGGFNVAPKELVAAIRRLCDEHGIVMIADEVQS----GFARTGKLFAMDHYADKPDLMTM--AKSLA 270 (421)
T ss_pred CceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEecccc----CCCCCCchhHHHhcCCCCcEEEe--ehhhc
Confidence 56888887643 356765434 8999999999999999999873 222222 12 3687765 48874
Q ss_pred ccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHHHHHHHHHHH
Q 001989 797 IPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAI 876 (985)
Q Consensus 797 ~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl~~~~~~~~ 876 (985)
||..+|.+++++++.+.+.... ..+++.|+++.++++.+.+..+..+.+ .++..
T Consensus 271 -----~G~pigav~~~~~i~~~~~~~~------------------~~~T~~gnpl~~aaa~a~l~~l~~~~~---~~~~~ 324 (421)
T PRK09792 271 -----GGMPLSGVVGNANIMDAPAPGG------------------LGGTYAGNPLAVAAAHAVLNIIDKESL---CERAN 324 (421)
T ss_pred -----CCCceEEEEEcHHHHhccCCCC------------------cCCCCCCCHHHHHHHHHHHHHHHhhhH---HHHHH
Confidence 3455788888887765543210 112344566777777788888765533 33455
Q ss_pred HHHHHHHHHhhc---cCCeeecCCCCceeeEEEEEecCc-c-ccCCCCHHHHHHHHHHCCCccCCCCCCCCCEEEEeccC
Q 001989 877 LNANYMAKRLEK---HYPILFRGVNGTVAHEFIVDLRGL-K-NTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTE 951 (985)
Q Consensus 877 ~~a~~l~~~L~~---g~~l~~~~~~~~~~~~~iv~~~~~-~-~~~g~~~~~v~~~L~~~Gi~~~~~~~p~~~~lris~t~ 951 (985)
+..+++.+.|++ .++.+........+ +.+.+..- . .........+.+.+.++|+.+.... +..+.+|+.|+.
T Consensus 325 ~~g~~l~~~l~~l~~~~p~v~~vrG~Gl~--~~ie~~~~~~~~~~~~~~~~l~~~~~~~Gv~i~~~g-~~~~~irl~P~l 401 (421)
T PRK09792 325 QLGQRLKNTLIDAKESVPAIAAVRGLGSM--IAAEFNDPQTGEPSAAIAQKIQQRALAQGLLLLTCG-AYGNVIRFLYPL 401 (421)
T ss_pred HHHHHHHHHHHHHHHhCCCcceecccceE--EEEEecCCccCCcchHHHHHHHHHHHHCCcEEeecC-CCCCEEEEeCCC
Confidence 666777776654 23321111110122 33444310 0 0000124668888899999874221 224899999999
Q ss_pred CCCHHHHHHHHccCChhHHHH
Q 001989 952 SESKSWTGIVMLSSPSEKKLH 972 (985)
Q Consensus 952 ~~t~eeId~~~~~~~l~~~~~ 972 (985)
..+++|||+ +++++.+++.
T Consensus 402 ~i~~~ei~~--~~~~l~~~l~ 420 (421)
T PRK09792 402 TIPDAQFDA--AMKILQDALS 420 (421)
T ss_pred cCCHHHHHH--HHHHHHHHHh
Confidence 999999999 7788877663
|
|
| >cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis | Back alignment and domain information |
|---|
Probab=99.68 E-value=3e-15 Score=171.91 Aligned_cols=209 Identities=20% Similarity=0.165 Sum_probs=149.1
Q ss_pred HHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHH----HHHCCcEEEEEcC
Q 001989 634 FNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPAT----AAMCGMKIVSVGT 709 (985)
Q Consensus 634 ~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~----a~~~G~~vv~v~~ 709 (985)
..++++.+++++|.+.+ +.++||++|+..++.++. .++++||++...|+..... +...|++++.++.
T Consensus 42 ~~~le~~la~l~g~~~a-~~~~sG~~Ai~~~l~~l~--------~~gd~Vl~~~~~y~~~~~~~~~~~~~~g~~~~~v~~ 112 (369)
T cd00614 42 VDALEKKLAALEGGEAA-LAFSSGMAAISTVLLALL--------KAGDHVVASDDLYGGTYRLFERLLPKLGIEVTFVDP 112 (369)
T ss_pred HHHHHHHHHHHHCCCCE-EEEcCHHHHHHHHHHHHc--------CCCCEEEECCCCcchHHHHHHHHHhhcCeEEEEeCC
Confidence 55888999999998764 555778877765555442 3678999988777654432 4467999999987
Q ss_pred CCCCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCccCCcEEE
Q 001989 710 DAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIGADVCH 788 (985)
Q Consensus 710 d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~g~Di~~ 788 (985)
+ |+++++++++ +++++|++++| |.+|.+. |+++|+++||++|++++||+++.. +.+..|..+|+|+++
T Consensus 113 ~-----d~~~l~~~i~---~~~~~v~~e~~~np~g~~~-dl~~i~~la~~~g~~livD~t~~~--~~~~~~~~~g~Divv 181 (369)
T cd00614 113 D-----DPEALEAAIK---PETKLVYVESPTNPTLKVV-DIEAIAELAHEHGALLVVDNTFAT--PYLQRPLELGADIVV 181 (369)
T ss_pred C-----CHHHHHHhcC---CCCeEEEEECCCCCCCeec-CHHHHHHHHHHcCCEEEEECCCcc--hhcCChhhhCCcEEE
Confidence 4 7999999997 78999999998 5789998 899999999999999999998753 333456678999999
Q ss_pred eCCcccccccCCCCCCceEEEEEcc-cccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHH
Q 001989 789 LNLHKTFCIPHGGGGPGMGPIGVKK-HLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKG 867 (985)
Q Consensus 789 ~s~hK~l~~p~g~GGPg~G~i~~~~-~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eG 867 (985)
.|++|+++.+ |...+|++++++ ++.+.+.... ...+...+ + ..+|+.+..+ +.
T Consensus 182 ~S~tK~l~g~---~~~~gG~v~~~~~~l~~~l~~~~-------------~~~g~~~~-----p---~~a~~~l~~l--~t 235 (369)
T cd00614 182 HSATKYIGGH---SDVIAGVVVGSGEALIQRLRFLR-------------LALGTILS-----P---FDAWLLLRGL--KT 235 (369)
T ss_pred eccceeccCC---CCceEEEEEeCcHHHHHHHHHHH-------------HhhCCCCC-----H---HHHHHHHcCC--CC
Confidence 9999998421 223588998876 5554432110 00111111 1 1233433333 45
Q ss_pred HHHHHHHHHHHHHHHHHHhhc
Q 001989 868 LTEASKIAILNANYMAKRLEK 888 (985)
Q Consensus 868 l~~~~~~~~~~a~~l~~~L~~ 888 (985)
+..+.++..+++.++++.|++
T Consensus 236 l~~r~~~~~~na~~la~~L~~ 256 (369)
T cd00614 236 LPLRMERHSENALKVAEFLEK 256 (369)
T ss_pred HHHHHHHHHHHHHHHHHHHHc
Confidence 566777889999999999986
|
This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life. |
| >PRK08912 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=8.6e-15 Score=169.48 Aligned_cols=302 Identities=14% Similarity=0.097 Sum_probs=186.8
Q ss_pred hhhHHHHHHHHHHHHHHHhCCC--cc-cee-cCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCc
Q 001989 627 AQGYQEMFNNLGEWLCTITGFD--SF-SLQ-PNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGM 702 (985)
Q Consensus 627 ~~G~~~~~~e~~~~la~l~G~~--~~-~~~-~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~ 702 (985)
.+|..++.+.+.+++.+.+|.+ .. .+. .+++++|...+ ++.+. .++++|+++++.|+.+...++..|+
T Consensus 62 ~~G~~~lr~~ia~~~~~~~g~~~~~~~~i~~t~G~~~al~~~---~~~~~-----~~gd~Vlv~~p~y~~~~~~~~~~g~ 133 (387)
T PRK08912 62 MMGLPELRQAVAAHYARFQGLDLDPETEVMVTSGATEALAAA---LLALV-----EPGDEVVLFQPLYDAYLPLIRRAGG 133 (387)
T ss_pred CCCcHHHHHHHHHHHHHHhCCCCCCcccEEEeCCcHHHHHHH---HHHhc-----CCCCEEEEeCCCchhhHHHHHHcCC
Confidence 3676666666666766666653 33 444 44445554322 22221 3678999999888877777889999
Q ss_pred EEEEEcCCC-CCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccc--cCHHHHHHHHHHcCCEEEEEccccccc-cC--
Q 001989 703 KIVSVGTDA-KGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYE--EGIDEICKIIHDNGGQVYMDGANMNAQ-VG-- 775 (985)
Q Consensus 703 ~vv~v~~d~-~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~--~di~eI~~la~~~galliVD~a~~~~~-~~-- 775 (985)
+++.+|+++ ++.+|+++|+++++ +++++|++++| |++|.+. .++++|.++|+++|+++++|.++.... .+
T Consensus 134 ~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~v~l~~p~NPtG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~ 210 (387)
T PRK08912 134 VPRLVRLEPPHWRLPRAALAAAFS---PRTKAVLLNNPLNPAGKVFPREELALLAEFCQRHDAVAICDEVWEHVVFDGRR 210 (387)
T ss_pred EEEEEecCcccCcCCHHHHHHHhC---ccceEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCeEEEEhhhhhhcccCCCC
Confidence 999999864 57899999999987 78899999998 5799886 147889999999999999999873111 10
Q ss_pred ---CC-CCCccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhH
Q 001989 776 ---LT-SPGYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSAL 851 (985)
Q Consensus 776 ---l~-~pg~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~ 851 (985)
+. .++..+.++++.|++|.|+.| |.++|++++++++.+.+.... .....+.++ ..+.
T Consensus 211 ~~~~~~~~~~~~~~i~~~S~SK~~g~~----GlRiG~~~~~~~~~~~l~~~~------------~~~~~~~~~--~~q~- 271 (387)
T PRK08912 211 HIPLMTLPGMRERTVKIGSAGKIFSLT----GWKVGFVCAAPPLLRVLAKAH------------QFLTFTTPP--NLQA- 271 (387)
T ss_pred CcChhhCCCccCceEEEeechhhccCc----CceeEEEecCHHHHHHHHHHH------------hhccccCCh--HHHH-
Confidence 10 111123568899999998653 678999999876654432100 000001110 0011
Q ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHH-H
Q 001989 852 ILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLM-D 929 (985)
Q Consensus 852 ~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~-~ 929 (985)
++...+. -..+-+++..++..++++++.+.|++ ++.+. .+.+.++ +.+.++.. ....+..++++.|. +
T Consensus 272 ---~~~~~l~-~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~--~~~g~~~--l~~~l~~~--~~~~~~~~~~~~l~~~ 341 (387)
T PRK08912 272 ---AVAYGLG-KPDDYFEGMRADLARSRDRLAAGLRRIGFPVL--PSQGTYF--LTVDLAPL--GLAEDDVAFCRRLVEE 341 (387)
T ss_pred ---HHHHHHh-CCHHHHHHHHHHHHHHHHHHHHHHHhCCCccc--CCCcceE--EEeccccc--CCCCCHHHHHHHHHhc
Confidence 1112221 11223345555667788889999986 44432 2223222 23444310 01246778999875 5
Q ss_pred CCCccCCC-CC----CCCCEEEEeccCCCCHHHHHHHHccCChhHHHH
Q 001989 930 YGFHGPTM-SW----PVPGTLMIEPTESESKSWTGIVMLSSPSEKKLH 972 (985)
Q Consensus 930 ~Gi~~~~~-~~----p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~ 972 (985)
+||.+... .| +..+++|+++.. +.++++. .++.|++.+.
T Consensus 342 ~gV~v~pg~~f~~~~~~~~~iRl~~~~--~~~~l~~--~l~rl~~~l~ 385 (387)
T PRK08912 342 AGVAAIPVSAFYEEDPVTSVVRFCFAK--RDATLDE--AVERLAAARR 385 (387)
T ss_pred CCEEEecchhhCCCCCCCCEEEEEEeC--CHHHHHH--HHHHHHHHHh
Confidence 79986532 22 235899999985 4788877 5566665544
|
|
| >PRK01688 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.9e-15 Score=172.56 Aligned_cols=278 Identities=15% Similarity=0.139 Sum_probs=178.1
Q ss_pred HHHHHHHHHHhCCCccceecCcHHH-HHHHHHHHHHHHHHhcCCCCC-CEEEEcCCCCcccHHHHHHCCcEEEEEcCCCC
Q 001989 635 NNLGEWLCTITGFDSFSLQPNAGAA-GEYAGLMVIRAYHKARGDHHR-NVCIIPVSAHGTNPATAAMCGMKIVSVGTDAK 712 (985)
Q Consensus 635 ~e~~~~la~l~G~~~~~~~~~sGa~-a~~a~l~air~~~~~~g~~~~-~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~d~~ 712 (985)
.++++++++.+|.+..++..+.|++ +. .++++.+. .++ ++|+++.+.|+.+...++..|++++.+|.+++
T Consensus 60 ~~l~~~~a~~~g~~~~~I~~~~Gs~e~i---~~~~~~~~-----~~g~~~vli~~P~y~~y~~~~~~~G~~~~~v~~~~~ 131 (351)
T PRK01688 60 KAVIENYAAYAGVKPEQVLVSRGADEGI---ELLIRAFC-----EPGKDAILYCPPTYGMYSVSAETIGVEIRTVPTLDN 131 (351)
T ss_pred HHHHHHHHHHhCCCHHHEEEcCCHHHHH---HHHHHHhc-----CCCCCEEEEcCCCHHHHHHHHHHcCCEEEEeecCCC
Confidence 3678899999999887766665654 33 33344332 244 78999988777777778899999999999878
Q ss_pred CCCCHHHHHHHHHhcCCCEEEEEEEcCC-CccccccCHHHHHHHHHHc--CCEEEEEccccccccCCCCC----CccCCc
Q 001989 713 GNINIEELRKAAEANRDNLSTLMVTYPS-THGVYEEGIDEICKIIHDN--GGQVYMDGANMNAQVGLTSP----GYIGAD 785 (985)
Q Consensus 713 g~iD~e~L~~~i~~~~~~t~~Vvv~~pn-~~G~i~~di~eI~~la~~~--galliVD~a~~~~~~~l~~p----g~~g~D 785 (985)
+.+|++++++++ +++++|++++|| ++|.+. +.+++.++++.. ++++++|+++.. +...... ....-=
T Consensus 132 ~~~d~~~l~~~~----~~~~lv~l~nPnNPTG~~~-~~~~l~~l~~~~~~~~~vivDEay~~-f~~~~s~~~~~~~~~n~ 205 (351)
T PRK01688 132 WQLDLPAIADNL----DGVKVVYVCSPNNPTGNLI-NPQDLRTLLELTRGKAIVVADEAYIE-FCPQASLAGWLAEYPHL 205 (351)
T ss_pred CCCCHHHHHHhc----cCCcEEEEeCCCCCCCCCC-CHHHHHHHHHhCCCCcEEEEECchhh-cCCCCChHHHHhhCCCE
Confidence 899999999887 378899999995 799998 677776666532 689999998732 1110010 111122
Q ss_pred EEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcH
Q 001989 786 VCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGS 865 (985)
Q Consensus 786 i~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~ 865 (985)
+++.|++|+|+. .|.++|++++++++.+.+.... ...++++ ....++.++|..-+.
T Consensus 206 iv~rSfSK~~gl----aGlRiGy~i~~~~~i~~l~~~~--------------~~~~v~~------~~~~~a~~~L~~~~~ 261 (351)
T PRK01688 206 VILRTLSKAFAL----AGLRCGFTLANEEVINLLLKVI--------------APYPLST------PVADIAAQALSPQGI 261 (351)
T ss_pred EEEecchHhhcC----HHHHHhHHhCCHHHHHHHHhcc--------------CCCCCCH------HHHHHHHHHHhcchH
Confidence 566778888754 3678899998877665443110 0012221 111222233332222
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcc--CCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCC-C-CC
Q 001989 866 KGLTEASKIAILNANYMAKRLEKH--YPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMS-W-PV 941 (985)
Q Consensus 866 eGl~~~~~~~~~~a~~l~~~L~~g--~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~-~-p~ 941 (985)
+-+++..+...++++++.+.|++. +...++ + +..+ +.++++ +..++.+.|.++||.+.... + ..
T Consensus 262 ~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~p-s-~~nf--i~~~~~--------~~~~l~~~L~~~gi~vr~~~~~~~~ 329 (351)
T PRK01688 262 AAMRERVAEINANRQWLIAALKEIPCVEQVFD-S-ETNY--ILARFT--------ASSAVFKSLWDQGIILRDQNKQPGL 329 (351)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCCeECC-C-CCcE--EEEEcC--------CHHHHHHHHHHCCeEEEECCCcCCC
Confidence 334455555667788899988762 222222 2 2222 334442 46889999999999886432 2 34
Q ss_pred CCEEEEeccCCCCHHHHHHHHccCCh
Q 001989 942 PGTLMIEPTESESKSWTGIVMLSSPS 967 (985)
Q Consensus 942 ~~~lris~t~~~t~eeId~~~~~~~l 967 (985)
++++||++. +.+|+++ ++++|
T Consensus 330 ~~~iRis~~---~~~e~~~--l~~al 350 (351)
T PRK01688 330 SNCLRITIG---TREECQR--VIDAL 350 (351)
T ss_pred CCeEEEeCC---CHHHHHH--HHHhh
Confidence 589999984 7899999 44444
|
|
| >PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.67 E-value=5.2e-15 Score=172.25 Aligned_cols=239 Identities=18% Similarity=0.106 Sum_probs=157.9
Q ss_pred HHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCch--
Q 001989 212 SLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDLK-- 289 (985)
Q Consensus 212 ~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~~-- 289 (985)
.+.++++.+|++.|.+. +.++++||+++.+++.++ +. +||+||++..+|+++...+...++..|++++++|++
T Consensus 65 ~~~~le~~lA~l~g~~~--av~~sSGt~Al~~al~~l-l~--~Gd~Vi~~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~d~ 139 (433)
T PRK08134 65 TVAVLEERVAALEGGVG--AIATASGQAALHLAIATL-MG--AGSHIVASSALYGGSHNLLHYTLRRFGIETTFVKPGDI 139 (433)
T ss_pred HHHHHHHHHHHHhCCCc--EEEeCCHHHHHHHHHHHH-hC--CCCEEEEeCCccHHHHHHHHHHHhhCCeEEEEECCCCH
Confidence 36678899999999876 678899998888777665 33 899999999999988887765556789999999764
Q ss_pred -hhhc-cCCCEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCCCCCcccceEEEecC-ccccccCCC
Q 001989 290 -DIDY-KSGDVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKPPGELGADIVVGSA-QRFGVPMGY 365 (985)
Q Consensus 290 -~l~~-l~~~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~~~~~~GaDi~v~s~-k~lg~P~~~ 365 (985)
++++ ++++|++|++++| |.+|.+.|+++|+++||++|++++||+ .++.+....|.++|||+++.|+ |++++ ++
T Consensus 140 ~~l~~~i~~~TklV~~e~~~np~g~v~Di~~I~~la~~~gi~livD~-t~a~~~~~~pl~~GaD~vv~S~tK~l~g-~g- 216 (433)
T PRK08134 140 DGWRAAIRPNTRLLFGETLGNPGLEVLDIPTVAAIAHEAGVPLLVDS-TFTTPYLLRPFEHGADLVYHSATKFLGG-HG- 216 (433)
T ss_pred HHHHHhcCCCCeEEEEECCCcccCcccCHHHHHHHHHHcCCEEEEEC-CCcccccCCchhcCCCEEEeccccccCC-CC-
Confidence 5666 8899999999887 789999999999999999999999953 4566666667799999999999 65543 22
Q ss_pred CCCcEEEEEEch-------hhHhcCCCceeeee-ecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHHHH
Q 001989 366 GGPHAAFLATSQ-------EYKRMMPGRIVGVS-IDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVY 437 (985)
Q Consensus 366 GGP~~G~l~~~~-------~~~~~lp~~~vG~t-~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~ 437 (985)
.--+|++..+. +....+.+.+.|+. .....+ +... ......| ..++.+.... +....| |+..
T Consensus 217 -~~~gG~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~--~~~~--~~~~~~~-~~~~~~~G~~--ls~~~A--~l~~ 286 (433)
T PRK08134 217 -TAIGGVLVDGGRFDWEASGKFPELTEPYAGFHGMVFAEE--STVA--AFLLRAR-REGLRDFGAC--LSPMNA--WQLL 286 (433)
T ss_pred -CceEEEEEecCccccccccccccccCCcccccccchhhc--cchh--HHHHHHH-HHHHHhcCCC--CCHHHH--HHHh
Confidence 10113332221 22223333333320 000000 0000 0000011 1122222111 111122 2355
Q ss_pred hCcchHHHHHHHHHHHHHHHHHHHhcCCCeE
Q 001989 438 HGPEGLKTIAQRVHGLAGTFALGLKKLGTVE 468 (985)
Q Consensus 438 ~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~ 468 (985)
.|-+-+..+.++..+++..+.+.|++...++
T Consensus 287 ~gL~tl~~R~~~~~~nA~~la~~L~~~p~V~ 317 (433)
T PRK08134 287 QGIETLPLRMERHVANTRKVVAFLASHPAVA 317 (433)
T ss_pred cCCCcHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 6666778888888999999999999875454
|
|
| >TIGR03540 DapC_direct LL-diaminopimelate aminotransferase | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.2e-14 Score=167.94 Aligned_cols=288 Identities=14% Similarity=0.139 Sum_probs=179.3
Q ss_pred hhHHHHHHHHHHHHHHHhCCC--cc-ceecCcH-HHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcE
Q 001989 628 QGYQEMFNNLGEWLCTITGFD--SF-SLQPNAG-AAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMK 703 (985)
Q Consensus 628 ~G~~~~~~e~~~~la~l~G~~--~~-~~~~~sG-a~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~ 703 (985)
+|..++.+.+.+++.+.+|.+ .. .+..++| +++... +++.+ ..++|+|+++++.++.+...++..|++
T Consensus 67 ~G~~~lr~~ia~~~~~~~~~~~~~~~~vi~t~G~~~~l~~---~~~~~-----~~~gd~vlv~~P~y~~~~~~~~~~G~~ 138 (383)
T TIGR03540 67 EGMLAYRQAVADWYKRRFGVELDPETEVLSLIGSKEGIAH---IPLAF-----VNPGDIVLVPDPGYPVYRIGTLFAGGE 138 (383)
T ss_pred CCCHHHHHHHHHHHHHhhCCCCCCCCeEEECCCcHHHHHH---HHHHh-----CCCCCEEEEeCCCCcchHHHHHhcCCE
Confidence 566666666677776666663 33 3544444 444432 23332 147889999998887777778899999
Q ss_pred EEEEcCCCC--CCCCHHHHHHHHHhcCCCEEEEEEEcC-CCcccccc--CHHHHHHHHHHcCCEEEEEccccccc-cCCC
Q 001989 704 IVSVGTDAK--GNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEE--GIDEICKIIHDNGGQVYMDGANMNAQ-VGLT 777 (985)
Q Consensus 704 vv~v~~d~~--g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~--di~eI~~la~~~galliVD~a~~~~~-~~l~ 777 (985)
++.+|.+.+ ..+|++++++++. +++++|++++| |++|.+.+ .+++|.++|+++|+++++|+++..-. .+..
T Consensus 139 v~~v~~~~~~g~~~d~~~l~~~~~---~~~~~v~i~~P~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~l~~~~~~ 215 (383)
T TIGR03540 139 PYEMPLKEENGFLPDFDAIPEDIA---KKAKLMFINYPNNPTGAVAPLKFFKELVEFAKEYNIIVCHDNAYSEITFDGYK 215 (383)
T ss_pred EEEEecCcccCCccCHHHHHhhcc---ccceEEEEeCCCCCcCccCCHHHHHHHHHHHHHcCEEEEEecchhhhccCCCC
Confidence 999998643 4679999999887 68999999998 57999871 37999999999999999999974111 1100
Q ss_pred CC--C----ccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhH
Q 001989 778 SP--G----YIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSAL 851 (985)
Q Consensus 778 ~p--g----~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~ 851 (985)
.+ . .....+++.|+.|+|+.| |.++|++++++++...+.... .....+.+. .
T Consensus 216 ~~~~~~~~~~~~~~i~~~SfSK~~g~~----GlRiG~~i~~~~l~~~~~~~~------------~~~~~~~~~------~ 273 (383)
T TIGR03540 216 APSFLEVDGAKDVGIEFHSLSKTYNMT----GWRIGMAVGNADLIAGLGKVK------------TNVDSGVFQ------A 273 (383)
T ss_pred CcCcccCCCcccCEEEEEecccccCCc----cceeeEEeCCHHHHHHHHHHH------------HhcccCCCh------H
Confidence 01 0 112346677888988543 677999998877654432100 000011110 1
Q ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHH-H
Q 001989 852 ILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLM-D 929 (985)
Q Consensus 852 ~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~-~ 929 (985)
...++..+|. -+.+-+++..+...++++++.+.|++ ++.+ ..+.+.++ +.+.++ .+.+..+++++|. +
T Consensus 274 ~q~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~--~~~~~~~~--~~~~l~-----~~~~~~~~~~~ll~~ 343 (383)
T TIGR03540 274 IQYAAIAALN-GPQDVVKEIRKIYQRRRDLLLEALKKIGIDV--EKPKATFY--VWVPVP-----EGYTSAEFAARLLEE 343 (383)
T ss_pred HHHHHHHHHh-CCHHHHHHHHHHHHHHHHHHHHHHHhCCCEe--cCCCcceE--EEEECC-----CCCCHHHHHHHHHHH
Confidence 1111223332 22344455555667888889999987 4333 22222222 345554 2457788998875 6
Q ss_pred CCCccCCC-CCCC--CCEEEEeccCCCCHHHHHH
Q 001989 930 YGFHGPTM-SWPV--PGTLMIEPTESESKSWTGI 960 (985)
Q Consensus 930 ~Gi~~~~~-~~p~--~~~lris~t~~~t~eeId~ 960 (985)
+||.+... .|+. .+++||++. .+++++++
T Consensus 344 ~gi~v~~g~~f~~~~~~~~Ris~~--~~~~~l~~ 375 (383)
T TIGR03540 344 TGVVVTPGVGFGEYGEGYIRISLT--VPDERLEE 375 (383)
T ss_pred CCEEEecchhhCccCCCeEEEEec--CCHHHHHH
Confidence 79987542 2332 478999996 45666666
|
This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation. |
| >PRK08153 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=5.9e-15 Score=169.66 Aligned_cols=292 Identities=13% Similarity=0.122 Sum_probs=184.6
Q ss_pred HHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcCCCCCC
Q 001989 635 NNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKGN 714 (985)
Q Consensus 635 ~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~d~~g~ 714 (985)
.++++.+++.++++..++..++|++..+. .+++.+. .+++.|+++++.|..+...++..|.+++.+|.+.+ .
T Consensus 70 ~~Lr~~ia~~~~~~~~~I~it~G~~~~l~--~~~~~~~-----~~gd~vlv~~p~y~~~~~~~~~~g~~~~~vp~~~~-~ 141 (369)
T PRK08153 70 HDLRHALAAHHGVAPENIMVGEGIDGLLG--LIVRLYV-----EPGDPVVTSLGAYPTFNYHVAGFGGRLVTVPYRDD-R 141 (369)
T ss_pred HHHHHHHHHHhCCCHHHEEEcCCHHHHHH--HHHHHhc-----CCCCEEEECCCcchHHHHHHHHcCCeEEEeeCCCC-C
Confidence 47888999999988767766667653322 2222221 47889999988776666667788999999998655 4
Q ss_pred CCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccCHHHHHHHHHHc--CCEEEEEccccccc-cC-CCCCCccCCc-EEE
Q 001989 715 INIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDN--GGQVYMDGANMNAQ-VG-LTSPGYIGAD-VCH 788 (985)
Q Consensus 715 iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~--galliVD~a~~~~~-~~-l~~pg~~g~D-i~~ 788 (985)
+|++++.+.+.. +++++|++++| |++|.+. +.+++.++++.. |+++++|+++..-. .+ .........+ +++
T Consensus 142 ~~~~~l~~~~~~--~~~~~i~l~~P~NPtG~~~-~~~~l~~l~~~~~~~~~lI~DE~y~~~~~~~~~~~~~~~~~~~i~~ 218 (369)
T PRK08153 142 EDLDALLDAARR--ENAPLVYLANPDNPMGSWH-PAADIVAFIEALPETTLLVLDEAYCETAPAGAAPPIDTDDPNVIRM 218 (369)
T ss_pred CCHHHHHHHhcc--cCCcEEEEeCCCCCCCCCC-CHHHHHHHHHhCCCCcEEEEeCchhhhcCcccchhhhhcCCCEEEE
Confidence 899998877642 57888999999 4699997 677777766543 89999999873110 11 0000111122 567
Q ss_pred eCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHHH
Q 001989 789 LNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGL 868 (985)
Q Consensus 789 ~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl 868 (985)
.|+.|+|++| |.++|++++++++.+.+.... ...+++ .....++.+++. ..+-+
T Consensus 219 ~SfSK~~g~~----GlRiG~~v~~~~~~~~l~~~~--------------~~~~~s------~~~q~~~~~~l~--~~~~~ 272 (369)
T PRK08153 219 RTFSKAYGLA----GARVGYAIGAPGTIKAFDKVR--------------NHFGMN------RIAQAAALAALK--DQAYL 272 (369)
T ss_pred ecchHhccCc----chheeeeecCHHHHHHHHHhh--------------cCCCCC------HHHHHHHHHHhc--CHHHH
Confidence 7778887543 778999999876654432110 011111 122222333332 22334
Q ss_pred HHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCC-CCCCCEEE
Q 001989 869 TEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMS-WPVPGTLM 946 (985)
Q Consensus 869 ~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~-~p~~~~lr 946 (985)
++..+...++.+++.+.|++ ++.+ . +. +..+ +.++++. ......++.+.|.++||.+.... .+..+++|
T Consensus 273 ~~~~~~~~~~r~~~~~~L~~~g~~~-~-p~-~~~f--~~~~~~~----~~~~a~~l~~~l~~~Gi~v~~p~~~~~~~~iR 343 (369)
T PRK08153 273 AEVVGKIAAARDRIAAIARANGLTP-L-PS-ATNF--VAIDCGR----DGAFARAVLDGLIARDIFVRMPGVAPLDRCIR 343 (369)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCcc-C-CC-cCcE--EEEECCC----CcccHHHHHHHHHHCCeEEeeCCCCCCCCeEE
Confidence 45555567777888888876 4432 1 11 2222 2344320 12357789999999999874211 12247999
Q ss_pred EeccCCCCHHHHHHHHccCChhHHHHhhccC
Q 001989 947 IEPTESESKSWTGIVMLSSPSEKKLHRLKMG 977 (985)
Q Consensus 947 is~t~~~t~eeId~~~~~~~l~~~~~~~~~~ 977 (985)
|++. +++|+++ ++++|+++++.++.|
T Consensus 344 is~~---~~~~~~~--~~~al~~~~~~~~~~ 369 (369)
T PRK08153 344 VSCG---PDEELDL--FAEALPEALEAARKG 369 (369)
T ss_pred EecC---CHHHHHH--HHHHHHHHHHHhhcC
Confidence 9984 8999999 889999999877654
|
|
| >PRK04311 selenocysteine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.7e-14 Score=168.29 Aligned_cols=306 Identities=17% Similarity=0.167 Sum_probs=184.3
Q ss_pred CcHHHHHHHHhCCccccccCCChhhHhh-hHHHHHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEE
Q 001989 180 VPPVILRNIMENPAWYTQYTPYQAEIAQ-GRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTF 258 (985)
Q Consensus 180 ~p~~v~~~i~~~~~~~t~~~pyq~e~sq-g~l~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~V 258 (985)
+|..+.+++.. ++..|......... ..-+.+.++++.+|+|+|++. +.+++++++++..++.++ .+||+|
T Consensus 98 l~~~v~eav~~---~~~~~~~le~~l~~g~~g~r~~~~e~~lA~l~Gae~--a~vv~sgtaAl~l~l~~l----~~GdeV 168 (464)
T PRK04311 98 LSEAAIEAVTE---AARGYSNLEYDLATGKRGSRDRALAALLCALTGAED--ALVVNNNAAAVLLALNAL----AAGKEV 168 (464)
T ss_pred CCHHHHHHHHH---HHhcccccccchhhcccchHHHHHHHHHHHHhCCCe--EEEECCHHHHHHHHHHHh----CCCCEE
Confidence 66666655543 23334321111211 112446678899999999885 667888887665544332 288999
Q ss_pred EEcCCCChhHHHH--HHHhhcCCCeEEEEeCc------hhhhc-cCCCEeEEEEEcC-CC--Ce--eeccHHHHHHHHHh
Q 001989 259 IIASNCHPQTIDI--CITRADGFDIKVVVSDL------KDIDY-KSGDVCGVLVQYP-GT--EG--EVLDYGDFIKNAHA 324 (985)
Q Consensus 259 lv~~~~H~s~~~~--~~~~a~~~gi~v~~v~~------~~l~~-l~~~t~~V~v~~p-n~--~G--~v~di~~I~~~a~~ 324 (985)
|+++.+|.++... +....+..|+++++++. +++++ ++++|++|++.++ |+ +| ...|+++|+++||+
T Consensus 169 Ivs~~e~~~~ggs~~i~~~~~~~G~~l~~v~~~~~t~~~dle~aI~~~TklV~~vh~sN~~i~G~~~~~dl~eI~~lak~ 248 (464)
T PRK04311 169 IVSRGELVEIGGAFRIPDVMRQAGARLVEVGTTNRTHLRDYEQAINENTALLLKVHTSNYRIEGFTKEVSLAELAALGKE 248 (464)
T ss_pred EEcchhhhhcCcchhhHHHHHHCCcEEEEECCCCCCCHHHHHHhcCccCeEEEEEcCCCccccccCCcCCHHHHHHHHHH
Confidence 9999887632110 11123457999988864 45666 8899999998876 54 44 56799999999999
Q ss_pred CCcEEEEEecCc------cccCC-----CCCCcccceEEEecC-ccccccCCCCCCcEEEEEEchhhHhcCCCceeeeee
Q 001989 325 NGVKVVMATDLL------ALTIL-----KPPGELGADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSI 392 (985)
Q Consensus 325 ~galliV~a~~~------~lg~l-----~~~~~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~ 392 (985)
+|++++||+-.. .+|+. ..+.++|+|++++|+ |+| |||++|++++++++++++...-++
T Consensus 249 ~gi~vivD~gsG~l~~~~~~gl~~~p~~~~~l~~GaDiv~fSg~K~L------gGp~~G~i~g~~~li~~l~~~~~~--- 319 (464)
T PRK04311 249 HGLPVVYDLGSGSLVDLSQYGLPDEPTVQELLAAGVDLVTFSGDKLL------GGPQAGIIVGKKELIARLKKHPLK--- 319 (464)
T ss_pred cCCeEEEECCCcccccchhccCCCCCchhhHHhcCCcEEEecCcccc------cCCceEEEEEcHHHHHHHhhchhH---
Confidence 999999964110 11111 123459999999999 655 567789999999988876321111
Q ss_pred cCCCCcceeeecccccccccccccCCCccchhHHHHHHHHH--HH----HHhCcchH---HHHHHHHHHHHHHHHHHHhc
Q 001989 393 DSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAM--YA----VYHGPEGL---KTIAQRVHGLAGTFALGLKK 463 (985)
Q Consensus 393 d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~--~l----~~~g~~Gl---~~i~~~~~~~a~~l~~~L~~ 463 (985)
+.+ |-.| ..+.++.+++ |+ ++.+-.++ ....++..++|..+++.|++
T Consensus 320 -----r~l-----------r~dk--------~~l~~l~~~l~~~~~~~~~~~~i~~l~~l~~~~~~~~~~A~~la~~L~~ 375 (464)
T PRK04311 320 -----RAL-----------RVDK--------LTLAALEATLRLYLDPEKLAEEIPTLRLLTRSPEELRARAERLAAALKA 375 (464)
T ss_pred -----HHH-----------hcch--------HHHHHHHHHHHHHhChhhhhhhCcHHHHhcCCHHHHHHHHHHHHHHHHh
Confidence 000 0111 1233333333 21 12222232 22335556678888888876
Q ss_pred CC--Ce--EEcCC---------C--CcceEE--EecCC--HHHHHHHHHHcC--ceeeeecCCeEEEEeccCCCHHHHHH
Q 001989 464 LG--TV--EVQGL---------P--FFDTVK--VKCAD--AHAIASAAYKIE--MNLRVVDSNTVTASFDETTTLEDVDK 522 (985)
Q Consensus 464 ~g--~~--~~~~~---------~--~~~~~~--~~~~~--~~~v~~~L~~~G--I~~~~~~~~~lris~t~~~t~edId~ 522 (985)
.. ++ ++... | ..+.+. +...+ +.++.++|++.. |..+ +..+.+.+-+-.. .++|++.
T Consensus 376 ~~~~~~~~~~~~~~~~~gggs~p~~~~~~~~v~~~~~~~~~~~l~~~lr~~~~~i~~r-~~~~~~~ld~r~~-~~~~~~~ 453 (464)
T PRK04311 376 ALGAAFAVEVVPSFSQVGGGSLPVDRLPSAAVTLTPKDRSLEALAARLRLLPPPVIGR-IEDGRLLLDLRTL-EEEDEER 453 (464)
T ss_pred ccCCCeeEEEEEccCccCCCCCcCCCCCeEEEEEeCCCCCHHHHHHHHhcCCCCEEEE-EECCEEEEEeCcC-CHHHHHH
Confidence 52 23 44311 1 134444 44333 899999999754 3343 4456666655433 5678888
Q ss_pred HHHHHhC
Q 001989 523 LFIVFAG 529 (985)
Q Consensus 523 li~aL~~ 529 (985)
++++|.+
T Consensus 454 ~~~~~~~ 460 (464)
T PRK04311 454 LAAALLE 460 (464)
T ss_pred HHHHHHH
Confidence 8888764
|
|
| >PRK06938 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.6e-14 Score=169.81 Aligned_cols=330 Identities=12% Similarity=0.103 Sum_probs=198.6
Q ss_pred cccccccccCCCccccccccccccccccCCCCchhhhhhHHHHHHHHHHHHHHHhCCC----cccee-cCcHHHHHHHHH
Q 001989 591 MIPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFD----SFSLQ-PNAGAAGEYAGL 665 (985)
Q Consensus 591 ~~~lG~~t~~~~~~~~~~~~~~~~f~~~~p~~p~e~~~G~~~~~~e~~~~la~l~G~~----~~~~~-~~sGa~a~~a~l 665 (985)
...||++++.+..+...+......+.+..-.. +...++.+.+++++..+ ...++ .+||++|+++++
T Consensus 74 ~~~lGh~~p~v~~Ai~~ql~~~~~~~~~~~~~---------~~~~~la~~L~~~~p~~~~~~~~v~f~~~SGSEAve~Al 144 (464)
T PRK06938 74 TLALGHNHPVVIEAIQQVLADELPLHTLDLTT---------PVKDQFVQDLFASLPEAFAREAKIQFCGPTGTDAVEAAL 144 (464)
T ss_pred ccccCCCCHHHHHHHHHHHHhhhcccccccCC---------HHHHHHHHHHHHhCcccccccceEEEeCCCcHHHHHHHH
Confidence 34688887777766554432111111111011 12335666777776422 12234 479999999999
Q ss_pred HHHHHHHHhcCCCCCCEEEE-cCCCCcccHHHHHHCC------------cEEEEEcCCCCCC------------CCHHHH
Q 001989 666 MVIRAYHKARGDHHRNVCII-PVSAHGTNPATAAMCG------------MKIVSVGTDAKGN------------INIEEL 720 (985)
Q Consensus 666 ~air~~~~~~g~~~~~~IIv-~~~~Hg~~~~~a~~~G------------~~vv~v~~d~~g~------------iD~e~L 720 (985)
+.+|.| +++.+||. ..++||....+....| -.+..+|.....+ .+++.+
T Consensus 145 klAr~~------tgr~~ii~~~~~yHG~t~~als~t~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l 218 (464)
T PRK06938 145 KLVKTA------TGRSTVLSFQGGYHGMSQGALSLMGNLGPKKPLGALLPGVQFLPYPYDYRCPFGLGGEAGVRANLHYL 218 (464)
T ss_pred HHHHHh------hCCCeEEEECCccCCccHHHHhhcCCccccccCCCCCCCcEEeCCCccccccccCchhhHHHHHHHHH
Confidence 998876 24556665 6689998766543221 1234455422111 236778
Q ss_pred HHHHHhcC---CCEEEEEEEcC-CCcccccc---CHHHHHHHHHHcCCEEEEEccccccccCCCCCCcc--------CCc
Q 001989 721 RKAAEANR---DNLSTLMVTYP-STHGVYEE---GIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYI--------GAD 785 (985)
Q Consensus 721 ~~~i~~~~---~~t~~Vvv~~p-n~~G~i~~---di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~--------g~D 785 (985)
++.+++.. +++++|+++-. ..-|++.+ -++++.++|+++|+++|+|+++ .|+.+.|.+ -+|
T Consensus 219 ~~~i~~~~~~~~~iAAvI~EPiqg~gG~~~p~~~yl~~lr~lc~~~giLlI~DEV~----tGfGRtG~~~a~e~~gv~PD 294 (464)
T PRK06938 219 ENLLDDPESGVVLPAAVILEVVQGEGGVIPAPIEWLRGLRRITEEAGIPLIVDEIQ----SGFGRTGKMFAFEHAGIIPD 294 (464)
T ss_pred HHHHHhhccCCCceEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccc----cCCCcCcHHHHHHhcCCCCC
Confidence 88886422 36888888642 23466542 3899999999999999999876 455555533 279
Q ss_pred EEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcH
Q 001989 786 VCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGS 865 (985)
Q Consensus 786 i~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~ 865 (985)
+++++ |.+ ++|-| +|.++.++++ ..+... ...+++.|+++.++++.+.|..+..
T Consensus 295 iv~~g--Kgl----ggG~P-lsAv~~~~~~-~~~~~~------------------~~~~T~~gnpla~Aaa~a~L~~l~~ 348 (464)
T PRK06938 295 VVVLS--KAI----GGSLP-LAVVVYREWL-DTWQPG------------------AHAGTFRGNQMAMAAGSATLRYIKE 348 (464)
T ss_pred EEEee--ccc----cCCCc-eEEEeehhHh-hccCCC------------------CCCCCCCcCHHHHHHHHHHHHHHHH
Confidence 99874 766 44445 5555667654 322110 1123456788888888899998877
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcc---CCee--ecCCCCceeeEEEEEecCcccc------CC---CCHHHHHHHHHHCC
Q 001989 866 KGLTEASKIAILNANYMAKRLEKH---YPIL--FRGVNGTVAHEFIVDLRGLKNT------AG---IEPEDVAKRLMDYG 931 (985)
Q Consensus 866 eGl~~~~~~~~~~a~~l~~~L~~g---~~l~--~~~~~~~~~~~~iv~~~~~~~~------~g---~~~~~v~~~L~~~G 931 (985)
+++. ++..+..++|.++|++. ++++ +.+. ..+. -+.+..-... .. .....+.+.+.++|
T Consensus 349 ~~l~---~~~~~~G~~l~~~L~~l~~~~~~i~~VrG~--Glm~--gie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G 421 (464)
T PRK06938 349 HRLA---EHAAAMGERLREHLRQLQRDYPQLGDVRGR--GLML--GVEIVDPQGEPDALGHPPANGELASLIQRECLRRG 421 (464)
T ss_pred hHHH---HHHHHHHHHHHHHHHHHHHhCCCeeeeecc--ceEE--EEEeccCcccccccccCCccHHHHHHHHHHHHHCC
Confidence 6554 45666778888888652 3322 1121 2222 2222100000 00 01345778888999
Q ss_pred CccCCCCCCCCCEEEEeccCCCCHHHHHHHHccCChhHHHHhhc
Q 001989 932 FHGPTMSWPVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRLK 975 (985)
Q Consensus 932 i~~~~~~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~~ 975 (985)
+.+.... +..+.||+.|+..+|++|||+ +++++++++..+.
T Consensus 422 ll~~~~g-~~~~~l~~~Ppl~it~~eid~--~~~~l~~~l~~~~ 462 (464)
T PRK06938 422 LILELGG-RHGSVVRFLPPLIITAEQIDE--VAEIFAEAVAAAV 462 (464)
T ss_pred eEEeecC-CCCCEEEEECCCccCHHHHHH--HHHHHHHHHHHHh
Confidence 9875322 123799999999999999999 8899999887654
|
|
| >PRK08133 O-succinylhomoserine sulfhydrylase; Validated | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.6e-14 Score=166.86 Aligned_cols=213 Identities=22% Similarity=0.213 Sum_probs=154.9
Q ss_pred HHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCch---
Q 001989 213 LLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDLK--- 289 (985)
Q Consensus 213 i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~~--- 289 (985)
+.++++.+|+++|.+. +.++.+|++++.++++++ . ++||+||+++..|+++...+...++..|++++++|.+
T Consensus 63 ~~~le~~la~l~g~~~--~v~~ssG~~Ai~~al~al-~--~~Gd~Vi~~~~~y~~t~~~~~~~~~~~G~~v~~vd~~d~~ 137 (390)
T PRK08133 63 VTMFQERLAALEGAEA--CVATASGMAAILAVVMAL-L--QAGDHVVSSRSLFGSTVSLFEKIFARFGIETTFVDLTDLD 137 (390)
T ss_pred HHHHHHHHHHHhCCCc--EEEECCHHHHHHHHHHHH-h--CCCCEEEEccCcchhHHHHHHHHHHHcCcEEEEECCCCHH
Confidence 5568899999999875 678889998887776655 2 3899999999999998887766566789999999764
Q ss_pred hhhc-cCCCEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCCCCCcccceEEEecC-ccccccCCCC
Q 001989 290 DIDY-KSGDVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKPPGELGADIVVGSA-QRFGVPMGYG 366 (985)
Q Consensus 290 ~l~~-l~~~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~~~~~~GaDi~v~s~-k~lg~P~~~G 366 (985)
++++ ++++|++|++.+| |++|.+.|+++|+++||++|++++|| +.++.+....|.++|+|++++|. |+++++ |
T Consensus 138 ~l~~~i~~~tklV~ie~p~NptG~v~dl~~I~~la~~~gi~livD-~t~~~~~~~~pl~~g~Divv~S~sK~~~g~---g 213 (390)
T PRK08133 138 AWRAAVRPNTKLFFLETPSNPLTELADIAALAEIAHAAGALLVVD-NCFCTPALQQPLKLGADVVIHSATKYLDGQ---G 213 (390)
T ss_pred HHHHhcCcCCeEEEEECCCCCCCCcCCHHHHHHHHHHcCCEEEEE-CCCcccccCCchhhCCcEEEeecceeecCC---c
Confidence 5666 7889999999998 78999999999999999999999995 34555555667788999999998 777532 1
Q ss_pred CCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcchHHHH
Q 001989 367 GPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTI 446 (985)
Q Consensus 367 GP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i 446 (985)
-.-+|++..+++.++++- ...+..|. +.+++ .+ |+...|.+.+..+
T Consensus 214 ~~~GG~vv~~~~~~~~~~-------------------------~~~~~~g~----~~~~~---~a--~~~l~gl~tl~~R 259 (390)
T PRK08133 214 RVLGGAVVGSKELMEEVF-------------------------GFLRTAGP----TLSPF---NA--WVFLKGLETLSLR 259 (390)
T ss_pred ceEeEEEEcCHHHHHHHH-------------------------HHHHHhCC----CCCHH---HH--HHHHcccchHHHH
Confidence 122367777766544330 00011110 11122 11 2234455567778
Q ss_pred HHHHHHHHHHHHHHHhcCCCeE
Q 001989 447 AQRVHGLAGTFALGLKKLGTVE 468 (985)
Q Consensus 447 ~~~~~~~a~~l~~~L~~~g~~~ 468 (985)
.++..+++.++.+.|++..+++
T Consensus 260 ~~~~~~~a~~la~~L~~~p~v~ 281 (390)
T PRK08133 260 MEAHSANALALAEWLEAHPGVE 281 (390)
T ss_pred HHHHHHHHHHHHHHHHhCCCee
Confidence 8888899999999999884465
|
|
| >PRK01533 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.7e-15 Score=171.99 Aligned_cols=281 Identities=10% Similarity=0.102 Sum_probs=179.7
Q ss_pred HHHHHHHHHHhCCCccceecCcHHH-HHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcCCCCC
Q 001989 635 NNLGEWLCTITGFDSFSLQPNAGAA-GEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKG 713 (985)
Q Consensus 635 ~e~~~~la~l~G~~~~~~~~~sGa~-a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~d~~g 713 (985)
.++++.+++++|.+..++..++|++ +. ..+++.+. .++++|+++++.+..+...++..|++++.+|.+ ++
T Consensus 67 ~~Lr~aia~~~~~~~~~I~vt~Gs~e~i---~~~~~~l~-----~~gd~vlv~~P~y~~~~~~~~~~g~~v~~v~~~-~~ 137 (366)
T PRK01533 67 TTLRQTIANKLHVKMEQVLCGSGLDEVI---QIISRAVL-----KAGDNIVTAGATFPQYRHHAIIEGCEVKEVALN-NG 137 (366)
T ss_pred HHHHHHHHHHhCCCcceEEECCCHHHHH---HHHHHHhc-----CCCCEEEEcCCcHHHHHHHHHHcCCEEEEeecC-CC
Confidence 3677888999999887766665654 33 33333331 367899999887766777788999999999985 45
Q ss_pred CCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccCHHHHHHHHHH--cCCEEEEEcccccccc--CCCC----CCccCC
Q 001989 714 NINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHD--NGGQVYMDGANMNAQV--GLTS----PGYIGA 784 (985)
Q Consensus 714 ~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~di~eI~~la~~--~galliVD~a~~~~~~--~l~~----pg~~g~ 784 (985)
.+|+++|+++++ +++++|++++| |++|.+. +.+++.++++. .+.++++|.++..-.. .... .....-
T Consensus 138 ~~d~~~l~~~~~---~~~~~v~i~~P~NPTG~~~-~~~~l~~l~~~~~~~~~~iiDe~y~~~~~~~~~~~~~~~~~~~~~ 213 (366)
T PRK01533 138 VYDLDEISSVVD---NDTKIVWICNPNNPTGTYV-NDRKLTQFIEGISENTLIVIDEAYYEYVTAKDFPETLPLLEKHKN 213 (366)
T ss_pred CcCHHHHHHHhC---cCCcEEEEeCCCCCCCCCc-CHHHHHHHHHhCCCCCEEEEEccHHHhhccccCcchhHHhccCCC
Confidence 699999999987 68899999999 4799997 66665555542 2347788998731110 0000 011122
Q ss_pred cEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhc
Q 001989 785 DVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMG 864 (985)
Q Consensus 785 Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg 864 (985)
-+++.|+.|+|++| |.++|++++++++.+.+.... ...+++ .....++.++|. .
T Consensus 214 vi~~~SfSK~~~l~----GlRiG~~i~~~~~~~~l~~~~--------------~~~~~~------~~~q~aa~~~l~--~ 267 (366)
T PRK01533 214 ILVLRTFSKAYGLA----SFRVGYAVGHEELIEKLNVVR--------------LPFNVS------SLAQKAATIAFG--D 267 (366)
T ss_pred EEEEeCchHHhcCh----HHHHhHHhCCHHHHHHHHHhc--------------CCCCcC------HHHHHHHHHHhC--C
Confidence 36778888888654 788999998876655442110 011121 111122223332 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCCCCCCC
Q 001989 865 SKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPG 943 (985)
Q Consensus 865 ~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~~p~~~ 943 (985)
.+-+++..+...++.+++.+.|+. ++++ + .+.+. + +.+.++ +..++.+.|.++||.+..+ ++
T Consensus 268 ~~~~~~~~~~~~~~r~~~~~~l~~~g~~~-~-~~~~n-f--~~~~~~--------~~~~~~~~l~~~GI~Vr~~----~~ 330 (366)
T PRK01533 268 DEFIEEIVRVNTEGLRQYESFCKENEIPF-Y-QSQTN-F--IFLPVE--------NGGEIYEACAHAGFIIRPF----PN 330 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCcc-C-CCcCc-E--EEEeCC--------CHHHHHHHHHHCCcEEccC----CC
Confidence 222334444455666677777765 4443 2 22222 2 334442 3578999999999998753 37
Q ss_pred EEEEeccCCCCHHHHHHHHccCChhHHHHhhcc
Q 001989 944 TLMIEPTESESKSWTGIVMLSSPSEKKLHRLKM 976 (985)
Q Consensus 944 ~lris~t~~~t~eeId~~~~~~~l~~~~~~~~~ 976 (985)
++||++ .+.+|.++ ++++|+++++..|.
T Consensus 331 ~iRis~---~~~~~~~~--l~~al~~~~~~~~~ 358 (366)
T PRK01533 331 GVRITV---GTREQNEG--VISVLQQHFENKKR 358 (366)
T ss_pred ceEEeC---CCHHHHHH--HHHHHHHHHHhccc
Confidence 899998 88999999 88899988766543
|
|
| >PRK06917 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.3e-14 Score=167.91 Aligned_cols=340 Identities=16% Similarity=0.136 Sum_probs=205.5
Q ss_pred ccccccccCCCccccccccccccccccCCCCchhhhhhHHHHHHHHHHHHHHHhCCC-ccceecCcHHHHHHHHHHHHHH
Q 001989 592 IPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFD-SFSLQPNAGAAGEYAGLMVIRA 670 (985)
Q Consensus 592 ~~lG~~t~~~~~~~~~~~~~~~~f~~~~p~~p~e~~~G~~~~~~e~~~~la~l~G~~-~~~~~~~sGa~a~~a~l~air~ 670 (985)
..||++++.+..+...+.... .+.....+.. +...++.+.|++++... ...++.+||++|++++++.+|.
T Consensus 43 ~~lGh~hp~v~~Ai~~ql~~~-~~~~~~~~~~--------~~~~~lae~L~~~~p~~~~~v~f~~sGsEAve~AlklAr~ 113 (447)
T PRK06917 43 AGIGHGVKEIADAIKEQAEEV-SFVYRSQFTS--------EPAEKLAKKLSDLSPGDLNWSFFVNSGSEANETAMKIAIQ 113 (447)
T ss_pred ccCCCCCHHHHHHHHHHHhhC-cCccccccCC--------HHHHHHHHHHHHhCCCCCCEEEEeCChHHHHHHHHHHHHH
Confidence 458988888877655554221 1111001111 23447888888887543 2357789999999999999988
Q ss_pred HHHhcCCCCCCEEEE-cCCCCcccHHHHHHCCc------------EEEEEcCCCCC------------CCCHHHHHHHHH
Q 001989 671 YHKARGDHHRNVCII-PVSAHGTNPATAAMCGM------------KIVSVGTDAKG------------NINIEELRKAAE 725 (985)
Q Consensus 671 ~~~~~g~~~~~~IIv-~~~~Hg~~~~~a~~~G~------------~vv~v~~d~~g------------~iD~e~L~~~i~ 725 (985)
|...++.+++.+||. ...+||.+..+....|. .+..+|..... ..|++.+++.++
T Consensus 114 ~~~~rg~t~r~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~le~~i~ 193 (447)
T PRK06917 114 HFQERGIQGKHKILSRWMSYHGITMGALSMSGHPLRRQRFVSLLEDYPTISAPYCYRCPVQKVYPTCQLACATELETAIE 193 (447)
T ss_pred HHHhcCCCCCCEEEEECCCcCCccHHHHHhcCCccccccCCCCCCCCeEeCCCcccccccCCChHHHHHHHHHHHHHHHH
Confidence 765556445667776 56799988766443221 12223221100 013567788887
Q ss_pred hcC-CCEEEEEEEcC-C-Ccccccc---CHHHHHHHHHHcCCEEEEEccccccccCCCCCCcc--------CCcEEEeCC
Q 001989 726 ANR-DNLSTLMVTYP-S-THGVYEE---GIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYI--------GADVCHLNL 791 (985)
Q Consensus 726 ~~~-~~t~~Vvv~~p-n-~~G~i~~---di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~--------g~Di~~~s~ 791 (985)
++. +++++|+++-. . .-|++.+ -+++|.++|+++|+++|+|+++. |+.++|.+ .+|+++++
T Consensus 194 ~~~~~~iAAvi~EPi~g~~gG~~~p~~~fl~~lr~lc~~~g~llI~DEv~t----GfGRtG~~~a~~~~gv~PDi~~~g- 268 (447)
T PRK06917 194 RIGAEHIAAFIAEPIIGAAGAAVVPPKGYYKVIKEICDHYDILFIADEVMT----GLGRTGAMFAMEHWGVEPDIMTLG- 268 (447)
T ss_pred hcCCCceEEEEEeccccCcCceecCCHHHHHHHHHHHHHcCCEEEEechhh----CcCcccchhhHHhcCCCCCEEEee-
Confidence 543 46888988752 2 2345432 38999999999999999998873 34455433 27998763
Q ss_pred cccccccCCCCC-CceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHHHHH
Q 001989 792 HKTFCIPHGGGG-PGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTE 870 (985)
Q Consensus 792 hK~l~~p~g~GG-Pg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl~~ 870 (985)
|.++ +|- | +|.+.+++++.+.+.... + . ....+++.|+++.++++.+.|..+..+++.
T Consensus 269 -K~l~----~G~~P-i~a~~~~~~i~~~~~~~~-~------------~-~~~~~T~~gnpl~~aaa~a~l~~l~~~~l~- 327 (447)
T PRK06917 269 -KGLG----AGYTP-IAATVVSDRVMEPILRGS-R------------S-IMSGHTLSANPLSAATALAVLEYMEKHNLP- 327 (447)
T ss_pred -ehhc----cCCcc-eEEEEEcHHHHHHHhccC-c------------c-cccccCCCCCHHHHHHHHHHHHHHHHCCHH-
Confidence 7763 332 5 455666766654432110 0 0 001124556778888888889888666543
Q ss_pred HHHHHHHHHHHHHHHhhcc---CCee--ecCCCCceeeEEEEEec--CccccCC----CCHHHHHHHHHHCCCccCCCCC
Q 001989 871 ASKIAILNANYMAKRLEKH---YPIL--FRGVNGTVAHEFIVDLR--GLKNTAG----IEPEDVAKRLMDYGFHGPTMSW 939 (985)
Q Consensus 871 ~~~~~~~~a~~l~~~L~~g---~~l~--~~~~~~~~~~~~iv~~~--~~~~~~g----~~~~~v~~~L~~~Gi~~~~~~~ 939 (985)
++..++.++|++.|++. ++++ +.+. + .+ +.+.+. ....+.. .....+.+.|.++|+++.....
T Consensus 328 --~~~~~~g~~l~~~L~~l~~~~~~i~~vrG~-G-l~--~~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~~~~ 401 (447)
T PRK06917 328 --EKAAEKGEYLIKGLQKVQQQSTIIGDVRGK-G-LL--IGVEFVADKKTKQPFSKSQAVASELISVAAKNGLLLYPAVA 401 (447)
T ss_pred --HHHHHHHHHHHHHHHHHHhcCCCEEEEeec-c-eE--EEEEEeccCCcCCCCcchhHHHHHHHHHHHhCCcEEEeccc
Confidence 46667778888888652 3322 1121 1 22 222221 0000000 0145677888999998743210
Q ss_pred ----CCCCEEEEeccCCCCHHHHHHHHccCChhHHHHhh
Q 001989 940 ----PVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRL 974 (985)
Q Consensus 940 ----p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~ 974 (985)
+..+.+|++|+..+|++|||+ +++++++++.++
T Consensus 402 ~~~g~~~~~i~l~Ppl~it~~eid~--~~~~l~~~l~~~ 438 (447)
T PRK06917 402 GQDGKEGDAVIIAPPMTITYSELDE--LLSIFAKSVEEM 438 (447)
T ss_pred ccCCCCCCEEEEECCCcCCHHHHHH--HHHHHHHHHHHH
Confidence 114799999999999999999 889999888765
|
|
| >PRK08114 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=4.7e-15 Score=169.47 Aligned_cols=211 Identities=14% Similarity=0.122 Sum_probs=151.8
Q ss_pred HHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHH----HHHCCcEEEEEcC
Q 001989 634 FNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPAT----AAMCGMKIVSVGT 709 (985)
Q Consensus 634 ~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~----a~~~G~~vv~v~~ 709 (985)
...+++.++++-|.+.+.+ +.||..|+.++++++. +++|+||+++..|+..... ++..|+++.+++.
T Consensus 64 ~~~le~~la~LEg~~~a~~-~~SGmaAi~~~~~~ll--------~~GD~Vv~~~~~Yg~t~~l~~~~l~~~Gi~v~~vd~ 134 (395)
T PRK08114 64 HFSLQEAMCELEGGAGCAL-YPCGAAAVANAILAFV--------EQGDHVLMTGTAYEPTQDFCSKILSKLGVTTTWFDP 134 (395)
T ss_pred HHHHHHHHHHHhCCCeEEE-EhHHHHHHHHHHHHHc--------CCCCEEEEeCCCcHHHHHHHHHHHHhcCcEEEEECC
Confidence 3468899999998876544 4568877755554432 4789999987766544333 3567999999885
Q ss_pred CCCCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccCHHHHHHHHHHcC--CEEEEEccccccccCCCCCCccCCcE
Q 001989 710 DAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDNG--GQVYMDGANMNAQVGLTSPGYIGADV 786 (985)
Q Consensus 710 d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~g--alliVD~a~~~~~~~l~~pg~~g~Di 786 (985)
.|.++++++|+ ++|++|++++| |++|.+. ||++|+++||++| ++++||++++. +.+.+|.++|+|+
T Consensus 135 -----~d~~~l~~~l~---~~TrlV~~EtpsNp~~~v~-DI~~Ia~ia~~~g~g~~lvVDnT~a~--p~~~~pl~~GaDi 203 (395)
T PRK08114 135 -----LIGADIAKLIQ---PNTKVVFLESPGSITMEVH-DVPAIVAAVRSVNPDAVIMIDNTWAA--GVLFKALDFGIDI 203 (395)
T ss_pred -----CCHHHHHHhcC---CCceEEEEECCCCCCCEee-cHHHHHHHHHHhCCCCEEEEECCCcc--ccccCHHHcCCcE
Confidence 38899999998 89999999998 5789998 9999999999984 99999999854 3346899999999
Q ss_pred EEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHH
Q 001989 787 CHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSK 866 (985)
Q Consensus 787 ~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~e 866 (985)
++.|+||+++.+ +.-++|+++.+++....+... ...++...+ ...+| |...|-+
T Consensus 204 vv~S~tKyl~Gh---sdv~~G~v~~~~~~~~~l~~~-------------~~~~G~~~~--------p~~a~--l~~rgl~ 257 (395)
T PRK08114 204 SIQAGTKYLVGH---SDAMIGTAVANARCWEQLREN-------------SYLMGQMVD--------ADTAY--MTSRGLR 257 (395)
T ss_pred EEEcCcccccCC---CcceeEEEEcCHHHHHHHHHH-------------HHhccCCCC--------HHHHH--HHHcCCC
Confidence 999999999522 112678777666543322100 001222221 12234 4445556
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccC
Q 001989 867 GLTEASKIAILNANYMAKRLEKHY 890 (985)
Q Consensus 867 Gl~~~~~~~~~~a~~l~~~L~~g~ 890 (985)
-+.-++++..+++..+++.|++..
T Consensus 258 TL~lR~~~~~~na~~va~~L~~hp 281 (395)
T PRK08114 258 TLGVRLRQHEESSLKVAEWLAEHP 281 (395)
T ss_pred cHHHHHHHHHHHHHHHHHHHHcCC
Confidence 677788999999999999999743
|
|
| >PLN00145 tyrosine/nicotianamine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.1e-14 Score=168.07 Aligned_cols=312 Identities=13% Similarity=0.059 Sum_probs=183.0
Q ss_pred hhHHHHHHHHHHHHHHHhCC--Cccceec-CcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEE
Q 001989 628 QGYQEMFNNLGEWLCTITGF--DSFSLQP-NAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKI 704 (985)
Q Consensus 628 ~G~~~~~~e~~~~la~l~G~--~~~~~~~-~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~v 704 (985)
+|..++.+.+.+++..-.|. +...+.. +++++|... +++.+. .++|+|+++++.+..+...+...|+++
T Consensus 94 ~G~~~lr~aia~~~~~~~~~~~~~~~v~it~G~~~al~l---~~~~l~-----~~Gd~Vlv~~P~y~~y~~~~~~~g~~~ 165 (430)
T PLN00145 94 VGLLPARRAIAEYLSRDLPYELSTDDIYLTAGCAQAIEI---IMSVLA-----QPGANILLPRPGYPLYEARAVFSGLEV 165 (430)
T ss_pred ccCHHHHHHHHHHHhhccCCCCChhhEEEeCCHHHHHHH---HHHHhc-----CCCCEEEEcCCCCccHHHHHHHcCCEE
Confidence 56554444444444333333 3334444 444555533 333321 478899999987777777788899999
Q ss_pred EEEcCC--CCCCCCHHHHHHHHHhcCCCEEEEEEEcCC-Ccccccc--CHHHHHHHHHHcCCEEEEEcccccc-ccC--C
Q 001989 705 VSVGTD--AKGNINIEELRKAAEANRDNLSTLMVTYPS-THGVYEE--GIDEICKIIHDNGGQVYMDGANMNA-QVG--L 776 (985)
Q Consensus 705 v~v~~d--~~g~iD~e~L~~~i~~~~~~t~~Vvv~~pn-~~G~i~~--di~eI~~la~~~galliVD~a~~~~-~~~--l 776 (985)
+.+++. .++.+|+++|+++++ ++++++++++|| ++|.+.+ .+++|+++|+++|+++++|+++..- ... +
T Consensus 166 ~~~~~~~~~~~~~d~~~l~~~~~---~~~~~i~i~~P~NPtG~v~~~~~l~~i~~~a~~~~i~ii~De~Y~~~~~~~~~~ 242 (430)
T PLN00145 166 RHFDLLPERGWEVDLEGVEALAD---ENTVAMVIINPNNPCGSVYSYEHLAKIAETARKLGILVIADEVYDHLTFGSKPF 242 (430)
T ss_pred EEeeCCcccCCcCCHHHHHHHhC---cCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeccchhhccCCCCc
Confidence 998864 347899999999987 789999999995 7999872 3889999999999999999987321 111 1
Q ss_pred CCCCcc---CCcEEEeCCcccccccCCCCCCceEEEEEc--ccccCcC--CCCccccCCCCCCCCCCCCCCCCCCcchhh
Q 001989 777 TSPGYI---GADVCHLNLHKTFCIPHGGGGPGMGPIGVK--KHLAPFL--PSHPVVSTGGIPAPEKSQPLGTIAAAPWGS 849 (985)
Q Consensus 777 ~~pg~~---g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~--~~l~~~l--p~~~~g~~~~~~~~~~~~~~~~i~s~~~g~ 849 (985)
.....+ ..=+++.|+.|.|++| |+++|++++. +.+.... ...+ . .......+.+...+
T Consensus 243 ~~~~~~~~~~~vi~~~S~SK~~~~p----G~RlG~iv~~~~~~~~~~~~~~~~~-~----------~~~~~~~~~~~~~Q 307 (430)
T PLN00145 243 VPMGVFGEVAPVLTLGSISKRWVVP----GWRLGWIATCDPNGILKETKVVDSI-R----------NYLNISTDPATFVQ 307 (430)
T ss_pred cchhhhcccCcEEEEeccccccCCC----CeeEEEEEEecchhhhhhhHHHHHH-H----------HHhcccCCCCHHHH
Confidence 111111 1226677888988765 7999999973 2222110 0000 0 00000111111111
Q ss_pred hHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhccCCeee-cCCCCceeeEEEEEecCccccCCC-CHHHHHHHH
Q 001989 850 ALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILF-RGVNGTVAHEFIVDLRGLKNTAGI-EPEDVAKRL 927 (985)
Q Consensus 850 ~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~g~~l~~-~~~~~~~~~~~iv~~~~~~~~~g~-~~~~v~~~L 927 (985)
. ++..+|..-..+-+++..++..++++++.+.|++...+.. ..+.+..+ +.++++.-. -.+. +..+++.+|
T Consensus 308 ~----a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~g~~~~~~P~ga~y--~~v~l~~~~-~~~~~~~~~~~~~l 380 (430)
T PLN00145 308 G----AIPQIIANTKEEFFTKTLGLLKETADICYEKIKEIKCITCPHKPEGSMF--VMVKLDLSC-LSGIKDDMDFCCKL 380 (430)
T ss_pred H----HHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcCCCeeeE--EEeccChhh-cCCCCCHHHHHHHH
Confidence 1 1112232111234555566677788889999976322211 12223333 334443100 0012 456677666
Q ss_pred H-HCCCccCC-CCCCCCCEEEEeccCCCCHHHHHHHHccCChhHHHHhhcc
Q 001989 928 M-DYGFHGPT-MSWPVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRLKM 976 (985)
Q Consensus 928 ~-~~Gi~~~~-~~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~~~ 976 (985)
. ++|+.+.. ..|..++++||++.. +.++++. .++.|++.+++.++
T Consensus 381 l~~~gV~v~pG~~fg~~~~lRis~~~--~~~~l~~--al~rl~~~~~~~~~ 427 (430)
T PLN00145 381 AKEESVVVLPGSALGMKNWLRITFAI--DPPSLED--GLERLKSFCLRHAK 427 (430)
T ss_pred HHhCCEEEeCccccCCCCeEEEEeCC--CHHHHHH--HHHHHHHHHHHhcc
Confidence 5 56887543 334456899999983 6788888 77888888877654
|
|
| >PRK05958 8-amino-7-oxononanoate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=99.67 E-value=3.1e-14 Score=164.46 Aligned_cols=277 Identities=17% Similarity=0.197 Sum_probs=178.9
Q ss_pred HhhhHHHHHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEE
Q 001989 205 IAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVV 284 (985)
Q Consensus 205 ~sqg~l~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~ 284 (985)
..+|......++++.+++++|.+ ...++.+|+.+..+++.++ .++||+|++++..|+++...++ ..|.+++
T Consensus 78 ~~~g~~~~~~~l~~~la~~~~~~--~~i~~~~g~~~~~~~l~~~---~~~gd~V~~~~~~~~~~~~~~~----~~g~~~~ 148 (385)
T PRK05958 78 LVTGNSPAHEALEEELAEWFGAE--RALLFSSGYAANLAVLTAL---AGKGDLIVSDKLNHASLIDGAR----LSRARVR 148 (385)
T ss_pred cccCCcHHHHHHHHHHHHHhCCC--cEEEECcHHHHHHHHHHHh---CCCCCEEEEeCccCHHHHHHHH----hcCCceE
Confidence 44555566778899999999954 3455666665555443332 2489999999999999988864 2466776
Q ss_pred EeC---chhhhc-cCC---CEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCCC----------CCc
Q 001989 285 VSD---LKDIDY-KSG---DVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKP----------PGE 346 (985)
Q Consensus 285 ~v~---~~~l~~-l~~---~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~~----------~~~ 346 (985)
.++ .+++++ +++ +++++++.++ |.+|.+.|+++|+++||++|+++++| +..+.|.+.. ...
T Consensus 149 ~~~~~d~~~l~~~i~~~~~~~~lvi~~~~~~~~G~~~~l~~i~~ia~~~~~~li~D-e~~~~g~~~~~g~~~~~~~~~~~ 227 (385)
T PRK05958 149 RYPHNDVDALEALLAKWRAGRALIVTESVFSMDGDLAPLAELVALARRHGAWLLVD-EAHGTGVLGPQGRGLAAEAGLAG 227 (385)
T ss_pred EeCCCCHHHHHHHHHhccCCCeEEEEEecccCCCCcCCHHHHHHHHHHhCCEEEEE-CcccccccCCCCCchHHhhCCCC
Confidence 664 456666 543 3555665555 67899999999999999999999994 3344333211 111
Q ss_pred ccceEEEecC-ccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhH
Q 001989 347 LGADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQA 425 (985)
Q Consensus 347 ~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~ 425 (985)
..-+|++++. |+|+. +| |++..++++.+.+-. . ..+ +.. + .-+++..
T Consensus 228 ~~~~i~~~s~sK~~~~------~G-g~~~~~~~~~~~~~~-------~--~~~-~~~-------------~--~~~~~~~ 275 (385)
T PRK05958 228 EPDVILVGTLGKALGS------SG-AAVLGSETLIDYLIN-------R--ARP-FIF-------------T--TALPPAQ 275 (385)
T ss_pred CCceEEEEechhhccc------CC-cEEEcCHHHHHHHHH-------h--Ccc-cee-------------c--CCCCHHH
Confidence 2234777776 87753 22 677777766554310 0 000 100 0 0011122
Q ss_pred HHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCCCcceEEEecCC---HHHHHHHHHHcCceeeee
Q 001989 426 LLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDTVKVKCAD---AHAIASAAYKIEMNLRVV 502 (985)
Q Consensus 426 l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~---~~~v~~~L~~~GI~~~~~ 502 (985)
..+..+++ .++.. . +++.++..++.+++.+.|+++| +++.. +...-+.+..++ +.++.++|.++||.+...
T Consensus 276 ~aa~~aal--~~~~~-~-~~~~~~~~~~~~~l~~~L~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~gI~v~~~ 349 (385)
T PRK05958 276 AAAARAAL--RILRR-E-PERRERLAALIARLRAGLRALG-FQLMD-SQSAIQPLIVGDNERALALAAALQEQGFWVGAI 349 (385)
T ss_pred HHHHHHHH--HHHhc-C-HHHHHHHHHHHHHHHHHHHHcC-CCcCC-CCCCEEEEEeCCHHHHHHHHHHHHHCCceEecc
Confidence 22222332 33322 2 5678889999999999999887 77653 222234455543 678999999999988542
Q ss_pred -----c--CCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 503 -----D--SNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 503 -----~--~~~lris~t~~~t~edId~li~aL~~ 529 (985)
. .+.+|++++.++|++|+|++++.|..
T Consensus 350 ~~~~~~~~~~~lRis~~~~~~~~~i~~~l~~l~~ 383 (385)
T PRK05958 350 RPPTVPAGTSRLRITLTAAHTEADIDRLLEALAE 383 (385)
T ss_pred cCCCCCCCCceEEEEecCCCCHHHHHHHHHHHHh
Confidence 1 25799999999999999999999864
|
|
| >PRK07550 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.6e-14 Score=167.20 Aligned_cols=347 Identities=12% Similarity=0.092 Sum_probs=202.1
Q ss_pred HHHHHHHHHHhccccCcccccccccccccCCCccccccccccc--cccccCCCCchhhhhhHHHHHHHHHHHHHHHhCCC
Q 001989 571 HELLRYIHLLQSKELSLCHSMIPLGSCTMKLNATTEMMPVTWP--SFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFD 648 (985)
Q Consensus 571 ~e~~~~l~~l~~~~~~~~~~~~~lG~~t~~~~~~~~~~~~~~~--~f~~~~p~~p~e~~~G~~~~~~e~~~~la~l~G~~ 648 (985)
.++.+.+.++++.+. +.+.|+.+.+.+.+.......... .......|.+ .+|..++.+.+.+++.+..|..
T Consensus 15 ~~~~~~~~~~~~~~~----~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~---~~G~~~lr~~ia~~~~~~~g~~ 87 (386)
T PRK07550 15 PEVRAWLAGYDGADG----PLIDLSQAVPGYPPPPELLRALAEAAADPAAHLYGP---VEGLPELREAYAAHYSRLYGAA 87 (386)
T ss_pred HHHHHHHHHHhhcCC----CeEEeCCCCCCCCCCHHHHHHHHHHHhCcCCcCCCC---CCCCHHHHHHHHHHHHHHhCCC
Confidence 566666766655442 356778766655433222221100 0011222333 3577677777777777766643
Q ss_pred --ccceecCcH-HHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcCCC--CCCCCHHHHHHH
Q 001989 649 --SFSLQPNAG-AAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDA--KGNINIEELRKA 723 (985)
Q Consensus 649 --~~~~~~~sG-a~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~d~--~g~iD~e~L~~~ 723 (985)
...+..++| ++|...+ ++.+. .+||+|+++++.|..+...++..|++++.++.++ ++.+|+++++++
T Consensus 88 ~~~~~i~~t~G~~~al~~~---~~~l~-----~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~l~~~ 159 (386)
T PRK07550 88 ISPEQVHITSGCNQAFWAA---MVTLA-----GAGDEVILPLPWYFNHKMWLDMLGIRPVYLPCDEGPGLLPDPAAAEAL 159 (386)
T ss_pred CCcceEEEecCcHHHHHHH---HHHhc-----CCCCEEEEcCCCCcchHHHHHhcCCEEEEEecCCCcCCCCCHHHHHHH
Confidence 334444445 4454333 32221 3788999999888777777888999999999964 356899999999
Q ss_pred HHhcCCCEEEEEEEcCC-Ccccccc--CHHHHHHHHHHcCCEEEEEccccccccCCCCC---C---ccCC-cEEEeCCcc
Q 001989 724 AEANRDNLSTLMVTYPS-THGVYEE--GIDEICKIIHDNGGQVYMDGANMNAQVGLTSP---G---YIGA-DVCHLNLHK 793 (985)
Q Consensus 724 i~~~~~~t~~Vvv~~pn-~~G~i~~--di~eI~~la~~~galliVD~a~~~~~~~l~~p---g---~~g~-Di~~~s~hK 793 (985)
++ +++++|++++|| ++|.+.+ ++++|+++|+++|+++++|+++..-......+ . ..+. .+++.|++|
T Consensus 160 ~~---~~~~~v~~~~P~NPtG~~~~~~~~~~i~~~~~~~~~~iI~Dd~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK 236 (386)
T PRK07550 160 IT---PRTRAIALVTPNNPTGVVYPPELLHELYDLARRHGIALILDETYRDFDSGGGAPHDLFADPDWDDTLVHLYSFSK 236 (386)
T ss_pred hc---ccCcEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCeEEEEeccchhhccCCCCCcchhhCCCccccEEEEecchh
Confidence 97 678888888985 7898752 48899999999999999999863111000011 0 1121 356788999
Q ss_pred cccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHHHHHHHH
Q 001989 794 TFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASK 873 (985)
Q Consensus 794 ~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl~~~~~ 873 (985)
+|+.| |.++|++++++++...+.... . ....+.+..++. ++...+..+ .+-+++..+
T Consensus 237 ~~g~~----G~RiG~i~~~~~~~~~~~~~~-~-------------~~~~~~s~~~q~----~~~~~l~~~-~~~~~~~~~ 293 (386)
T PRK07550 237 SYALT----GHRVGAVVASPARIAEIEKFM-D-------------TVAICAPRIGQI----AVAWGLPNL-ADWRAGNRA 293 (386)
T ss_pred hccCc----ccceEeeecCHHHHHHHHHHH-h-------------hcccCCCcHHHH----HHHHHhccH-HHHHHHHHH
Confidence 88544 678999998876554332110 0 001111111121 111222211 222333444
Q ss_pred HHHHHHHHHHHHhhccCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHH-HCCCccCCC-CCC--CCCEEEEec
Q 001989 874 IAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLM-DYGFHGPTM-SWP--VPGTLMIEP 949 (985)
Q Consensus 874 ~~~~~a~~l~~~L~~g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~-~~Gi~~~~~-~~p--~~~~lris~ 949 (985)
...++++++.+.|.+...+...+ .+..+ +.+.++. .+.+..+++++|. ++||.+... .|. ..+++||++
T Consensus 294 ~~~~~~~~l~~~L~~~~~~~~~~-~g~~~--~~~~~~~----~~~~~~~l~~~l~~~~gv~v~pg~~f~~~~~~~iRis~ 366 (386)
T PRK07550 294 EIARRRDAFRAVFARLPGWELLA-SGAYF--AYVRHPF----PDRPSREVARRLAKEAGILCLPGTMFGPGQEGYLRLAF 366 (386)
T ss_pred HHHHHHHHHHHHHHhCCCceeCC-CceEE--EEecCCC----CCCCHHHHHHHHHHhcCEEEeCchhhCCCCCCEEEEEe
Confidence 56677788888887532222222 12222 3344431 1457889999875 579987532 121 247899999
Q ss_pred cCCCCHHHHHHHHccCChh
Q 001989 950 TESESKSWTGIVMLSSPSE 968 (985)
Q Consensus 950 t~~~t~eeId~~~~~~~l~ 968 (985)
+. .+.+++++ .++.|.
T Consensus 367 ~~-~~~~~~~~--~~~~l~ 382 (386)
T PRK07550 367 AN-ADVAGIGE--LVERLR 382 (386)
T ss_pred ec-CCHHHHHH--HHHHHH
Confidence 64 45888888 444443
|
|
| >PRK06234 methionine gamma-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.1e-14 Score=168.80 Aligned_cols=274 Identities=16% Similarity=0.153 Sum_probs=185.1
Q ss_pred HHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc---hh
Q 001989 214 LNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL---KD 290 (985)
Q Consensus 214 ~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~---~~ 290 (985)
.++++.+|++.|.+. +.++.+|++++.++++++ . ++||+||++...|+++...+...++..|++++++|. ++
T Consensus 67 ~~Le~~iA~~~g~~~--~l~~~sG~~Ai~~al~~l-l--~~Gd~Vl~~~~~y~~~~~~~~~~~~~~G~~v~~vd~~d~e~ 141 (400)
T PRK06234 67 TEVENKLALLEGGEA--AVVAASGMGAISSSLWSA-L--KAGDHVVASDTLYGCTFALLNHGLTRYGVEVTFVDTSNLEE 141 (400)
T ss_pred HHHHHHHHHHhCCCc--EEEEcCHHHHHHHHHHHH-h--CCCCEEEEecCccchHHHHHHHHHhhCCeEEEEECCCCHHH
Confidence 357789999999764 678889998877766554 2 389999999999999888876666778999999876 45
Q ss_pred hhc-cCCCEeEEEEEcC-CCCeeeccHHHHHHHHHhC--CcEEEEEecCccccCCCCCCcccceEEEecC-ccccccCCC
Q 001989 291 IDY-KSGDVCGVLVQYP-GTEGEVLDYGDFIKNAHAN--GVKVVMATDLLALTILKPPGELGADIVVGSA-QRFGVPMGY 365 (985)
Q Consensus 291 l~~-l~~~t~~V~v~~p-n~~G~v~di~~I~~~a~~~--galliV~a~~~~lg~l~~~~~~GaDi~v~s~-k~lg~P~~~ 365 (985)
+++ ++++|++|++.+| |++|.+.|+++|+++||++ |++++|| +.++.+....+.++|+||+++|. |.++++
T Consensus 142 l~~~i~~~tklI~iesP~NPtG~v~dl~~I~~la~~~~~~i~livD-ea~~~~~~~~~l~~g~Divv~S~sK~l~g~--- 217 (400)
T PRK06234 142 VRNALKANTKVVYLETPANPTLKVTDIKAISNIAHENNKECLVFVD-NTFCTPYIQRPLQLGADVVVHSATKYLNGH--- 217 (400)
T ss_pred HHHHhccCCeEEEEECCCCCCCCcCCHHHHHHHHHhcCCCCEEEEE-CCCCchhcCCchhhCCcEEEeeccccccCC---
Confidence 655 7889999999998 7899999999999999997 8999994 45555555566788999999998 777532
Q ss_pred CCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcchHHH
Q 001989 366 GGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKT 445 (985)
Q Consensus 366 GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~ 445 (985)
|...+|++++++++.+++- ..+ . +...| . +.+++ .+. +...+.+-+..
T Consensus 218 g~~~gG~v~~~~~~~~~l~--~~~-------~--------------~~~~g--~--~l~p~---~a~--l~~~~l~tl~~ 265 (400)
T PRK06234 218 GDVIAGFVVGKEEFINQVK--LFG-------I--------------KDMTG--S--VIGPF---EAF--LIIRGMKTLQI 265 (400)
T ss_pred CCceeEEEEecHHHHHHHH--HHH-------H--------------HHhcC--C--CCCHH---HHH--HHHhccCcHHH
Confidence 2233689999887766541 000 0 00001 0 01122 222 23444555667
Q ss_pred HHHHHHHHHHHHHHHHhcCCCeE-EcCC-----C-----------CcceEEEecCC----HHHHHHHHHHcCce--ee--
Q 001989 446 IAQRVHGLAGTFALGLKKLGTVE-VQGL-----P-----------FFDTVKVKCAD----AHAIASAAYKIEMN--LR-- 500 (985)
Q Consensus 446 i~~~~~~~a~~l~~~L~~~g~~~-~~~~-----~-----------~~~~~~~~~~~----~~~v~~~L~~~GI~--~~-- 500 (985)
+.++..+++.++.+.|++...+. +..+ | +..-|+|.+++ +.++.+.|.-.++- +.
T Consensus 266 r~~~~~~na~~~a~~L~~~~~V~~V~~p~l~~~~~~~~~~~~~~~~g~l~s~~l~~~~~~~~~f~~~l~~~~~~~s~G~~ 345 (400)
T PRK06234 266 RMEKHCKNAMKVAKFLESHPAVEKVYYPGLESFEYYELAKKQMSLPGAMISFELKGGVEEGKVVMNNVKLATLAVSLGDA 345 (400)
T ss_pred HHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCCcHHHHHHhCCCCCceEEEEecCcHHHHHHHHHhCCcceEeccCCCC
Confidence 78888899999999999875343 2211 1 11246777754 44555555433321 10
Q ss_pred --e---------------------ecCCeEEEEeccCCCHHHHHHHHHHHh
Q 001989 501 --V---------------------VDSNTVTASFDETTTLEDVDKLFIVFA 528 (985)
Q Consensus 501 --~---------------------~~~~~lris~t~~~t~edId~li~aL~ 528 (985)
. +.++.+|+|++.-+.++=|+.|.++|.
T Consensus 346 ~sl~~~p~~~~~~~~~~~~~~~~gi~~~l~R~svGlE~~~dl~~dl~~al~ 396 (400)
T PRK06234 346 ETLIQHPASMTHSPYTAEERKEAGISDGLVRLSVGLEDVDDIIADLKQALD 396 (400)
T ss_pred CceecCCccCCCCCCCHHHHHhcCCCCCeEEEEeCCCCHHHHHHHHHHHHH
Confidence 0 113679999987665555566666654
|
|
| >TIGR00713 hemL glutamate-1-semialdehyde-2,1-aminomutase | Back alignment and domain information |
|---|
Probab=99.67 E-value=6.7e-15 Score=172.36 Aligned_cols=294 Identities=15% Similarity=0.180 Sum_probs=175.3
Q ss_pred HHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEE-cCCCCcccHHHHHHC--Cc---------
Q 001989 635 NNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCII-PVSAHGTNPATAAMC--GM--------- 702 (985)
Q Consensus 635 ~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv-~~~~Hg~~~~~a~~~--G~--------- 702 (985)
.++.+.|++++......++.+||++|++++++++|.|. ++++||+ ...+||......... |.
T Consensus 91 ~~lae~l~~~~~~~~~v~~~~sGseA~e~Alk~ar~~~------gr~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~ 164 (423)
T TIGR00713 91 ILLAKEIISRVPSVEMVRFVNSGTEATMSAVRLARGYT------GRDKIIKFEGCYHGHHDALLVKAGSGAATLGLPTSP 164 (423)
T ss_pred HHHHHHHHHhCCcccEEEEeCCHHHHHHHHHHHHHHhh------CCCEEEEEcCCCCCChhhhhccccCcccccCCCCCC
Confidence 46778888877543345678999999999999888762 3567776 556888654332211 10
Q ss_pred --------EEEEEcCCCCCCCCHHHHHHHHHhcCCCEEEEEEE-cCCCccccccC---HHHHHHHHHHcCCEEEEEcccc
Q 001989 703 --------KIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVT-YPSTHGVYEEG---IDEICKIIHDNGGQVYMDGANM 770 (985)
Q Consensus 703 --------~vv~v~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~-~pn~~G~i~~d---i~eI~~la~~~galliVD~a~~ 770 (985)
.+..+|. .|+++|+++++++.+++++|+++ .++..|.+.++ +++|.++|+++|+++|+|+++.
T Consensus 165 ~~~~~~~~~~~~~~~-----~d~~~l~~~i~~~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~ 239 (423)
T TIGR00713 165 GVPEDFAKLTLVLPY-----NDLEALEEVFEEYGEEIAGVIVEPVAGNMGVVPPKPEFLAGLRALTEEYGSLLIFDEVMT 239 (423)
T ss_pred CCCcccccceEEeCC-----CCHHHHHHHHHHcCCcEEEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHhCCEEEEEcccc
Confidence 1222332 38999999997554678888886 56667877632 8999999999999999999873
Q ss_pred cccc-C-CCCC--CccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcc
Q 001989 771 NAQV-G-LTSP--GYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAP 846 (985)
Q Consensus 771 ~~~~-~-l~~p--g~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~ 846 (985)
++. + .... ....+|+++ +.|.+ + +|..+|++++++++.+.+... +. ....+++
T Consensus 240 -g~r~g~~~~~~~~~~~pDi~t--~sK~l----~-~G~pig~v~~~~~i~~~~~~~--~~-------------~~~~~T~ 296 (423)
T TIGR00713 240 -GFRVALGGAQEYFGVEPDLTT--LGKII----G-GGLPVGAFGGRREIMERLAPE--GP-------------VYQAGTL 296 (423)
T ss_pred -ccccCcchhHHHhCCCcchhh--hhhhh----c-CCCceeeeeEHHHHHHhhCcC--CC-------------eeeccCC
Confidence 221 0 0000 012357664 34766 3 456688999998877655311 00 0011123
Q ss_pred hhhhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhh----c-cCCeeecCCCCceeeEEEEEecCccc---cCCC
Q 001989 847 WGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLE----K-HYPILFRGVNGTVAHEFIVDLRGLKN---TAGI 918 (985)
Q Consensus 847 ~g~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~----~-g~~l~~~~~~~~~~~~~iv~~~~~~~---~~g~ 918 (985)
.+++..++++.+.|..+..+++.+ +..++.+++++.|. + ++.....+. +..+ .+.+..+...+ ....
T Consensus 297 ~~~~~~~aaa~a~l~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~v~~~-g~~~-~v~~~~~~~~~~~~~~~~ 371 (423)
T TIGR00713 297 SGNPLAMAAGLATLKLLDEEGVYT---ELDELAKRLAEGLSEVLEDTGIPHTVNRV-GSMF-SLFFTEEEVTNYADAKKS 371 (423)
T ss_pred CCCHHHHHHHHHHHHHHhcccHHH---HHHHHHHHHHHHHHHHHHhcCCCeEEEee-ccEE-EEEEecCCCCChhhhhcc
Confidence 345666677777787775544333 33444455555543 3 222211221 2222 12222110000 0001
Q ss_pred C---HHHHHHHHHHCCCccCCCCCCCCCEEEEeccCCCCHHHHHHHHccCChhHHHHhh
Q 001989 919 E---PEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRL 974 (985)
Q Consensus 919 ~---~~~v~~~L~~~Gi~~~~~~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~ 974 (985)
+ ...+.+.|.++|+.+....+ +.+|+++. +|++||++ +++.|++++.++
T Consensus 372 ~~~~~~~~~~~l~~~Gv~v~~~~~---~~~~l~~~--~t~~~i~~--~~~~l~~~l~~~ 423 (423)
T TIGR00713 372 DTELFAKFFHEMLDKGVFLPPSQF---EACFLSAA--HTEEDIEN--TIEAAEEVFAEL 423 (423)
T ss_pred cHHHHHHHHHHHHHCCeEEecCCc---cceeeECC--CCHHHHHH--HHHHHHHHHhhC
Confidence 1 23688889999998754332 46788876 79999999 778888887653
|
This enzyme, glutamate-1-semialdehyde-2,1-aminomutase (glutamate-1-semialdehyde aminotransferase, GSA aminotransferase), contains a pyridoxal phosphate attached at a Lys residue at position 283 of the seed alignment. It is in the family of class III aminotransferases. |
| >TIGR00508 bioA adenosylmethionine-8-amino-7-oxononanoate transaminase | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.2e-14 Score=169.67 Aligned_cols=296 Identities=15% Similarity=0.180 Sum_probs=185.6
Q ss_pred HHHHHHHHHHhCCCc-cceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEE-cCCCCcccHHHHHHCCc----------
Q 001989 635 NNLGEWLCTITGFDS-FSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCII-PVSAHGTNPATAAMCGM---------- 702 (985)
Q Consensus 635 ~e~~~~la~l~G~~~-~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv-~~~~Hg~~~~~a~~~G~---------- 702 (985)
.++.++++++++.+. ..++.+||++|++++++.+|.|...+|..++.+||. ...+||....+....|-
T Consensus 91 ~~la~~l~~~~~~~~~~v~f~~sGseA~e~AlklAr~~~~~~~~~~r~~il~~~~~yHG~t~~~~s~~~~~~~~~~~~~~ 170 (427)
T TIGR00508 91 IELCQKLVKMTPNALDCVFLADSGSVAVEVALKMALQYWQAKGEKNRQKFLTIRSGYHGDTFGAMSVCDPENSMHSLYKG 170 (427)
T ss_pred HHHHHHHHhhCCCCCCEEEEeCCcHHHHHHHHHHHHHHHHhhCCCCccEEEEEcCCcCCccHhhhcccCCcccccccccc
Confidence 467778888875432 356778999999999999988754444333456665 77899976544332221
Q ss_pred ---EEEEEcCCCC-C-----CCCHHHHHHHHHhcCCCEEEEEEEcC-C-Cccccc---cCHHHHHHHHHHcCCEEEEEcc
Q 001989 703 ---KIVSVGTDAK-G-----NINIEELRKAAEANRDNLSTLMVTYP-S-THGVYE---EGIDEICKIIHDNGGQVYMDGA 768 (985)
Q Consensus 703 ---~vv~v~~d~~-g-----~iD~e~L~~~i~~~~~~t~~Vvv~~p-n-~~G~i~---~di~eI~~la~~~galliVD~a 768 (985)
.+..+|.... . ..|++++++++.++.+++++|+++.. . .-|.+. .++++|.++|+++|+++|+|++
T Consensus 171 ~~~~~~~~~~p~~~~~~~~~~~~~~~l~~~l~~~~~~vaavivEPv~~g~gG~~~~~~~~l~~l~~lc~~~~~llI~DEv 250 (427)
T TIGR00508 171 YLPEQIFAPAPQNRFDEEWNEEAITPLAKLMELHSDEIAAVILEPIVQGAGGMRFYHPTYLKRVQALCKQYDILLIADEI 250 (427)
T ss_pred cCCCCeEcCCCCccccchhHHHHHHHHHHHHHhcCCcEEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEecc
Confidence 1112222110 0 12577888888765567888888752 3 334332 2699999999999999999999
Q ss_pred ccccccCCCCCCc--------cCCcEEEeCCcccccccCCCCC-CceEEEEEcccccCcCCCCccccCCCCCCCCCCCCC
Q 001989 769 NMNAQVGLTSPGY--------IGADVCHLNLHKTFCIPHGGGG-PGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPL 839 (985)
Q Consensus 769 ~~~~~~~l~~pg~--------~g~Di~~~s~hK~l~~p~g~GG-Pg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~ 839 (985)
|. ++ .+.|. ..+|++++ .|.|+ || .-++.++.++++.+.+.....+ ..
T Consensus 251 ~t-G~---Gr~G~~~~~~~~~v~pDi~~~--gK~l~-----gG~~p~~a~~~~~~~~~~~~~~~~~------------~~ 307 (427)
T TIGR00508 251 AT-GF---GRTGKLFACEHAGVVPDILCV--GKALT-----GGYMTLSATVTTDKVAQTISSGEAG------------CF 307 (427)
T ss_pred cc-CC---CcCCccchhhhcCCCCCEEEe--chhhh-----cCcccceEEEEcHHHHHHHhcCCCC------------cc
Confidence 72 33 23332 24788875 48773 44 3456666676665544311000 00
Q ss_pred CCCCCcchhhhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhcc--CCee--ecCCCCceeeEEEEEecCcccc
Q 001989 840 GTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKH--YPIL--FRGVNGTVAHEFIVDLRGLKNT 915 (985)
Q Consensus 840 ~~i~s~~~g~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~g--~~l~--~~~~~~~~~~~~iv~~~~~~~~ 915 (985)
...+++.|++..++++.+.|..+..+.+ .++..++.++|+++|++. .... ..+. + .+ +.+.+..
T Consensus 308 -~~~~T~~g~p~~~aaa~a~l~~l~~~~~---~~~~~~~~~~l~~~L~~l~~~~~i~~vrg~-G-~~--~~i~~~~---- 375 (427)
T TIGR00508 308 -MHGPTFMGNPLACAVAEASLAILLEGEW---QKQVSAIENQLKRELSPLRKNPVVKDVRVL-G-AI--GVVEMYK---- 375 (427)
T ss_pred -ccCCCCCcCHHHHHHHHHHHHHHHhCCH---HHHHHHHHHHHHHHHHHhhcCCCEEeEecc-c-cE--EEEEECC----
Confidence 0112344567777778888888765543 456778889999988762 1111 1111 1 12 2233321
Q ss_pred CCCCHHHHHHHHHHCCCccCCCCCCCCCEEEEeccCCCCHHHHHHHHccCChhHHHH
Q 001989 916 AGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKSWTGIVMLSSPSEKKLH 972 (985)
Q Consensus 916 ~g~~~~~v~~~L~~~Gi~~~~~~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~ 972 (985)
......+.++|.++|+++... .+.+|++|+..+|++|||+ +++++++++.
T Consensus 376 -~~~~~~~~~~l~~~Gv~~~~~----~~~l~~~ppl~~t~~~id~--~~~~l~~~l~ 425 (427)
T TIGR00508 376 -PVNVEELQKKFVEQGVWIRPF----GKLIYVMPPYIITTEQLQK--LTAALIEALH 425 (427)
T ss_pred -ccCHHHHHHHHHHCCeEEEec----CCEEEEECCCCCCHHHHHH--HHHHHHHHHh
Confidence 234678999999999998543 2589999999999999999 7788888774
|
All members of the seed alignment have been demonstrated experimentally to act as EC 2.6.1.62, an enzyme in the biotin biosynthetic pathway. Alternate names include 7,8-diaminopelargonic acid aminotransferase, DAPA aminotransferase, and adenosylmethionine-8-amino-7-oxononanoate aminotransferase. The gene symbol is bioA in E. coli and BIO3 in S. cerevisiae. |
| >PRK07504 O-succinylhomoserine sulfhydrylase; Reviewed | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.3e-14 Score=167.91 Aligned_cols=212 Identities=20% Similarity=0.219 Sum_probs=151.6
Q ss_pred HHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc---hh
Q 001989 214 LNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL---KD 290 (985)
Q Consensus 214 ~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~---~~ 290 (985)
.++++.+|+++|++.+. .+.+|++++.+++++. + ++||+|+++...|+++...++..++..|++++.++. ++
T Consensus 68 ~~Le~~lA~l~G~~~~~--~~~sG~~Ai~~~l~~~-l--~~Gd~Vl~~~~~y~~~~~~~~~~~~~~G~~v~~vd~~d~e~ 142 (398)
T PRK07504 68 DMFEKRMCALEGAEDAR--ATASGMAAVTAAILCQ-V--KAGDHVVAARALFGSCRYVVETLLPRYGIESTLVDGLDLDN 142 (398)
T ss_pred HHHHHHHHHHhCCCeee--EecCHHHHHHHHHHHH-h--CCCCEEEEcCCchhHHHHHHHHHHhhcCeEEEEECCCCHHH
Confidence 45779999999998743 4668887766555443 2 389999999999999888877666678999998764 55
Q ss_pred hhc-cCCCEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCCCCCcccceEEEecC-ccccccCCCCC
Q 001989 291 IDY-KSGDVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKPPGELGADIVVGSA-QRFGVPMGYGG 367 (985)
Q Consensus 291 l~~-l~~~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~~~~~~GaDi~v~s~-k~lg~P~~~GG 367 (985)
+++ ++++|++|++.+| |++|.+.|+++|.++||++|++++|| +.++.+....|.++|+|+++.|. |+|+++ |.
T Consensus 143 l~~ai~~~tklV~lesp~NptG~v~dl~~I~~la~~~gi~lvvD-~a~a~~~~~~~~~~gaDivv~S~sK~l~g~---g~ 218 (398)
T PRK07504 143 WEKAVRPNTKVFFLESPTNPTLEVIDIAAVAKIANQAGAKLVVD-NVFATPLFQKPLELGAHIVVYSATKHIDGQ---GR 218 (398)
T ss_pred HHHhcCcCceEEEEECCCCCCcEecCHHHHHHHHHHcCCEEEEE-CCccccccCCchhhCCCEEEeeccccccCC---cc
Confidence 666 7889999999998 78999999999999999999999994 45566666677889999999998 877542 21
Q ss_pred CcEEEEEEchhhHhc-CCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcchHHHH
Q 001989 368 PHAAFLATSQEYKRM-MPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTI 446 (985)
Q Consensus 368 P~~G~l~~~~~~~~~-lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i 446 (985)
.-+|++..+++.+.+ +. ...+..|. +.++. .|+ +...+.+-+..+
T Consensus 219 ~~GG~vv~~~~~i~~~~~-------------------------~~~~~~g~----~~s~~---~A~--~~l~~L~tl~~R 264 (398)
T PRK07504 219 CLGGVVLSDKAWIEEHLQ-------------------------DYFRHTGP----SLSPF---NAW--TLLKGLETLPVR 264 (398)
T ss_pred ceEEEEEeCcHHHHHHHH-------------------------HHHHHhCC----CCCHH---HHH--HHHhccchHHHH
Confidence 224677666654421 10 00011110 01111 222 234455667778
Q ss_pred HHHHHHHHHHHHHHHhcCCCeE
Q 001989 447 AQRVHGLAGTFALGLKKLGTVE 468 (985)
Q Consensus 447 ~~~~~~~a~~l~~~L~~~g~~~ 468 (985)
.++..+++.++.+.|++..+++
T Consensus 265 ~~~~~~na~~la~~L~~~p~v~ 286 (398)
T PRK07504 265 VRQQTESAAAIADFLAGHPKVA 286 (398)
T ss_pred HHHHHHHHHHHHHHHHcCCCcc
Confidence 8888899999999999874454
|
|
| >PRK09028 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.1e-14 Score=166.84 Aligned_cols=216 Identities=16% Similarity=0.096 Sum_probs=150.3
Q ss_pred HHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHH----HHHCCcEEEEEcCC
Q 001989 635 NNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPAT----AAMCGMKIVSVGTD 710 (985)
Q Consensus 635 ~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~----a~~~G~~vv~v~~d 710 (985)
.++++.++++.|.+.+ +.+.||+.|+.++++++. ++||+||+++..|+..... ....|+++..++.+
T Consensus 64 ~~Le~~iA~le~~~~~-~~~~sG~~Ai~~~l~all--------~~GD~Vvv~~~~Y~~t~~l~~~~l~~~Gi~v~~v~~~ 134 (394)
T PRK09028 64 FAFQAAIVELEGGAGT-ALYPSGAAAISNALLSFL--------KAGDHLLMVDSCYEPTRDLCDKILKGFGIETTYYDPM 134 (394)
T ss_pred HHHHHHHHHHhCCCcE-EEECCHHHHHHHHHHHHh--------CCCCEEEEECCCcHHHHHHHHHhhhhcceEEEEECCC
Confidence 4688899999887654 455678777755555442 4789999988766544332 34578898887753
Q ss_pred CCCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCccCCcEEEe
Q 001989 711 AKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIGADVCHL 789 (985)
Q Consensus 711 ~~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~g~Di~~~ 789 (985)
|.++++++++ ++|++|++++| |++|.+. |+++|+++||++|++++||.++.. +...+|.++|+|+++.
T Consensus 135 -----~~e~l~~~l~---~~TklV~lespsNPtg~v~-dl~~I~~la~~~g~~lvvD~t~a~--p~~~~Pl~~GaDivv~ 203 (394)
T PRK09028 135 -----IGEGIRELIR---PNTKVLFLESPGSITMEVQ-DVPTLSRIAHEHDIVVMLDNTWAS--PINSRPFEMGVDISIQ 203 (394)
T ss_pred -----CHHHHHHhcC---cCceEEEEECCCCCCCcHH-HHHHHHHHHHHcCCEEEEECCccc--cccCCccccCceEEEE
Confidence 6788999887 88999999999 5789887 899999999999999999999853 3346788999999999
Q ss_pred CCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHHHH
Q 001989 790 NLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLT 869 (985)
Q Consensus 790 s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl~ 869 (985)
|+|||++.+ +.--+|+++.++++.+.+.... ..++...+ + ..+| +...|-+.+.
T Consensus 204 S~tK~l~Gh---~d~~~G~~~~~~~~~~~l~~~~-------------~~~G~~~~-----p---~~a~--l~~rgl~TL~ 257 (394)
T PRK09028 204 AATKYIVGH---SDVMLGTATANEKHWDQLREHS-------------YLMGQCTS-----P---DDVY--LAMRGLRTLG 257 (394)
T ss_pred eCCeEecCC---CCEEEEEEECCHHHHHHHHHHH-------------HhcCCCCC-----H---HHHH--HHHcccCcHH
Confidence 999999521 1123666665554433221100 01122221 1 1234 4445666677
Q ss_pred HHHHHHHHHHHHHHHHhhccC---CeeecC
Q 001989 870 EASKIAILNANYMAKRLEKHY---PILFRG 896 (985)
Q Consensus 870 ~~~~~~~~~a~~l~~~L~~g~---~l~~~~ 896 (985)
-++++..+++..+++.|++.. .+.|++
T Consensus 258 lR~~~~~~na~~la~~L~~~p~v~~V~yPg 287 (394)
T PRK09028 258 VRLAQHEKNALKVANWLATRPEVDHVRHPA 287 (394)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCccEEECCC
Confidence 888999999999999998743 345543
|
|
| >PRK15407 lipopolysaccharide biosynthesis protein RfbH; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.4e-14 Score=169.18 Aligned_cols=378 Identities=14% Similarity=0.119 Sum_probs=219.7
Q ss_pred CCHHHHHHHHHHHhccccCcccccccccccccCCCccccccccc-cccccc-cCCCCchhhhhhHHHHHHHHHHHHHHHh
Q 001989 568 HTEHELLRYIHLLQSKELSLCHSMIPLGSCTMKLNATTEMMPVT-WPSFAN-IHPFAPADQAQGYQEMFNNLGEWLCTIT 645 (985)
Q Consensus 568 ~se~e~~~~l~~l~~~~~~~~~~~~~lG~~t~~~~~~~~~~~~~-~~~f~~-~~p~~p~e~~~G~~~~~~e~~~~la~l~ 645 (985)
+.|.++++.+-++.+.-..+++.+-+|+.|.++++......+.. ...... ...+ ....| ....++++.+++++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~a~~~~~~~~---~~~~G--~~~~~fe~~lA~~~ 76 (438)
T PRK15407 2 MTEEELRQQILELVREYAELAHAPKPFVPGKSPIPPSGKVIDAKELQNLVDASLDF---WLTTG--RFNDAFEKKLAEFL 76 (438)
T ss_pred ccHHHHHHHHHHHHHHHHHHhcccccccCCCCCCCcCccCCCHHHHHHHHHHHHhC---cccCC--hhHHHHHHHHHHHh
Confidence 46788888888887776666666666776666554432222210 000000 0000 00112 12568899999999
Q ss_pred CCCccceecCcHHHHHHHHHHHHHHH-HHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcCCC-CCCCCHHHHHHH
Q 001989 646 GFDSFSLQPNAGAAGEYAGLMVIRAY-HKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDA-KGNINIEELRKA 723 (985)
Q Consensus 646 G~~~~~~~~~sGa~a~~a~l~air~~-~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~d~-~g~iD~e~L~~~ 723 (985)
|.+. .+.++||++|...++.++... ....+..+|++||++...|..+.......|++++.++++. ++.+|+++++++
T Consensus 77 g~~~-~v~~~sGt~al~~aL~al~~~~~~~~~~~pGd~VIv~~~t~~a~~~~v~~~G~~pv~vdvd~~~~~id~~~le~~ 155 (438)
T PRK15407 77 GVRY-ALLVNSGSSANLLAFSALTSPKLGDRALKPGDEVITVAAGFPTTVNPIIQNGLVPVFVDVELPTYNIDASLLEAA 155 (438)
T ss_pred CCCe-EEEECCHHHHHHHHHHHHhhccccccCCCCCCEEEECCCCcHHHHHHHHHcCCEEEEEecCCCcCCcCHHHHHHH
Confidence 9875 356778888776666544210 0011235789999999878777777778899999999874 588999999999
Q ss_pred HHhcCCCEEEEEEEcCCCccccccCHHHHHHHHHHcCCEEEEEccccccccCCC-CCCccCCcEEEeCCcccccccCCCC
Q 001989 724 AEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLT-SPGYIGADVCHLNLHKTFCIPHGGG 802 (985)
Q Consensus 724 i~~~~~~t~~Vvv~~pn~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~-~pg~~g~Di~~~s~hK~l~~p~g~G 802 (985)
++ ++|++|+++++ .|... |+++|.++|+++|++|++|++|+.+...-. ..|.+| |+.++|+|..-.+ . .
T Consensus 156 i~---~~tkaVi~~~~--~G~p~-dl~~I~~la~~~gi~vIeDaa~a~G~~~~g~~~G~~g-d~~~fSf~~~k~~--~-~ 225 (438)
T PRK15407 156 VS---PKTKAIMIAHT--LGNPF-DLAAVKAFCDKHNLWLIEDNCDALGSTYDGRMTGTFG-DIATLSFYPAHHI--T-M 225 (438)
T ss_pred cC---cCCeEEEEeCC--CCChh-hHHHHHHHHHHCCCEEEEECccchhhhcCCeeeeccC-ceEEEeCCCCCCc--c-c
Confidence 97 78999999874 56666 899999999999999999999965432211 245665 9999998764322 2 2
Q ss_pred CCceEEEEEccc-ccCcCCC-CccccCC------CC------------CCCCCC--CCCCCCCCcchhhhHHHHHHHHHH
Q 001989 803 GPGMGPIGVKKH-LAPFLPS-HPVVSTG------GI------------PAPEKS--QPLGTIAAAPWGSALILPISYTYI 860 (985)
Q Consensus 803 GPg~G~i~~~~~-l~~~lp~-~~~g~~~------~~------------~~~~~~--~~~~~i~s~~~g~~~~~~~a~a~l 860 (985)
|.| |+++++++ +.+.+.. +..|... +. ..+... .....+..++--+-..++.+..-|
T Consensus 226 geG-G~l~t~d~~l~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~n~rmsel~AAig~~qL 304 (438)
T PRK15407 226 GEG-GAVFTNDPLLKKIIESFRDWGRDCWCAPGCDNTCGKRFGWQLGELPFGYDHKYTYSHLGYNLKITDMQAAIGLAQL 304 (438)
T ss_pred cCc-eEEEECCHHHHHHHHHHHHhCcccccccccccccccccccccccccccccccccccccccccCccHHHHHHHHHHH
Confidence 444 78888753 3322110 0011100 00 000000 000000000000112222222222
Q ss_pred HHhcHHHHHHHHHHHHHHHHHHHHHhhccCC-eeec--CCC-CceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCC
Q 001989 861 AMMGSKGLTEASKIAILNANYMAKRLEKHYP-ILFR--GVN-GTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPT 936 (985)
Q Consensus 861 ~~lg~eGl~~~~~~~~~~a~~l~~~L~~g~~-l~~~--~~~-~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~ 936 (985)
+.+.+..++..++++++.+.|.+..+ +..+ .+. .+.++.+.+.+.. ..+.+.+++.+.|.++||.+..
T Consensus 305 -----~~l~~~~~~R~~~a~~y~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~~---~~~~~Rd~l~~~L~~~GI~~~~ 376 (438)
T PRK15407 305 -----EKLPGFIEARKANFAYLKEGLASLEDFLILPEATPNSDPSWFGFPITVKE---DAGFTRVELVKYLEENKIGTRL 376 (438)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHhccCCCccccCcCCCCCeeEEEEEEEEECC---cCCCCHHHHHHHHHHCCCCccc
Confidence 34555566677788888888875221 2111 111 1333445555431 1135678999999999996531
Q ss_pred -----CC---------------CC-----CCCEEEEeccCCCCHHHHHHHHccCChhHHHH
Q 001989 937 -----MS---------------WP-----VPGTLMIEPTESESKSWTGIVMLSSPSEKKLH 972 (985)
Q Consensus 937 -----~~---------------~p-----~~~~lris~t~~~t~eeId~~~~~~~l~~~~~ 972 (985)
+. +| ....|.+-+...-|++|+++ .+++++++++
T Consensus 377 ~~~~~~~~~p~~~~~~~~~~~~~P~ae~~~~~~l~LP~~~~l~~~~v~~--i~~~i~~~~~ 435 (438)
T PRK15407 377 LFAGNLTRQPYFKGVKYRVVGELTNTDRIMNDTFWIGVYPGLTEEMLDY--VIEKIEEFFG 435 (438)
T ss_pred cCCCccccChhhhhcCCCCCCCChHHHHHHhCeEEecCCCCCCHHHHHH--HHHHHHHHHh
Confidence 11 11 01335554555679999999 7888888764
|
|
| >PRK08960 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=2e-14 Score=166.45 Aligned_cols=299 Identities=10% Similarity=0.061 Sum_probs=177.9
Q ss_pred hhHHHHHHHHHHHHHHHhCC--CccceecCcH-HHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEE
Q 001989 628 QGYQEMFNNLGEWLCTITGF--DSFSLQPNAG-AAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKI 704 (985)
Q Consensus 628 ~G~~~~~~e~~~~la~l~G~--~~~~~~~~sG-a~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~v 704 (985)
+|..++.+.+.+++.+.+|. +...+..++| ++|.. .+++.+. .++|+|+++++.|..+...+...|.++
T Consensus 69 ~g~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~---~~~~~~~-----~~gd~vlv~~p~y~~~~~~~~~~g~~~ 140 (387)
T PRK08960 69 RGLPALREAIAGFYAQRYGVDVDPERILVTPGGSGALL---LASSLLV-----DPGKHWLLADPGYPCNRHFLRLVEGAA 140 (387)
T ss_pred CCCHHHHHHHHHHHHHHhCCCCChhhEEEccCcHHHHH---HHHHHhc-----CCCCEEEEcCCCCcchHHHHHhcCCeE
Confidence 56555555555555555454 3444544444 44543 2333321 478999999998888888888889999
Q ss_pred EEEcCCCC--CCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccc--cCHHHHHHHHHHcCCEEEEEccccccc-cC-CC
Q 001989 705 VSVGTDAK--GNINIEELRKAAEANRDNLSTLMVTYP-STHGVYE--EGIDEICKIIHDNGGQVYMDGANMNAQ-VG-LT 777 (985)
Q Consensus 705 v~v~~d~~--g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~--~di~eI~~la~~~galliVD~a~~~~~-~~-l~ 777 (985)
+.+|++.+ +.+|+++++++++ ++++++++++| |++|.+. .++++|+++|+++|+++++|+++..-. .. ..
T Consensus 141 ~~v~~~~~~~~~~d~~~l~~~~~---~~~~~i~i~~p~NPtG~~~~~~~~~~l~~~~~~~~~~li~De~Y~~~~~~~~~~ 217 (387)
T PRK08960 141 QLVPVGPDSRYQLTPALVERHWN---ADTVGALVASPANPTGTLLSRDELAALSQALRARGGHLVVDEIYHGLTYGVDAA 217 (387)
T ss_pred EEEecCcccCCCCCHHHHHHHhC---ccceEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCC
Confidence 99998654 4799999999887 77888999999 5799986 146778888999999999999863111 10 00
Q ss_pred CCCccCCc-EEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHH
Q 001989 778 SPGYIGAD-VCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPIS 856 (985)
Q Consensus 778 ~pg~~g~D-i~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a 856 (985)
.......+ +++.|++|.|+.| |.++|++++++++.+.+.... .....+.+...+. ++
T Consensus 218 ~~~~~~~~vi~~~S~SK~~g~~----GlRiG~~~~~~~~~~~~~~~~--------------~~~~~~~s~~~q~----a~ 275 (387)
T PRK08960 218 SVLEVDDDAFVLNSFSKYFGMT----GWRLGWLVAPPAAVPELEKLA--------------QNLYISASTPAQH----AA 275 (387)
T ss_pred ChhhccCCEEEEeecccccCCc----ccEEEEEEcCHHHHHHHHHHH--------------hhhccCCCHHHHH----HH
Confidence 11112223 5677888988543 677999999877654432100 0001111111121 12
Q ss_pred HHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHH-HCCCcc
Q 001989 857 YTYIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLM-DYGFHG 934 (985)
Q Consensus 857 ~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~-~~Gi~~ 934 (985)
.+.+..-..+-+.+..+...++.+.+.+.|++ ++.+.. .+.+..+ +.++++. .+.+..+++++|. ++||.+
T Consensus 276 ~~~l~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~-~p~g~~f--~~~~~~~----~~~~~~~~~~~ll~~~gi~v 348 (387)
T PRK08960 276 LACFEPETLAILEARRAEFARRRDFLLPALRELGFGIAV-EPQGAFY--LYADISA----FGGDAFAFCRHFLETEHVAF 348 (387)
T ss_pred HHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCc-CCCeeEE--EEEeccc----cCCCHHHHHHHHHHhCCEEE
Confidence 22222111233444445566677888888876 333211 1222222 3455541 1246788988875 579987
Q ss_pred CCC-CCC---CCCEEEEeccCCCCHHHHHHHHccCChhHH
Q 001989 935 PTM-SWP---VPGTLMIEPTESESKSWTGIVMLSSPSEKK 970 (985)
Q Consensus 935 ~~~-~~p---~~~~lris~t~~~t~eeId~~~~~~~l~~~ 970 (985)
... .|. ..+++||+++. +.+++.. .++.|++.
T Consensus 349 ~pg~~f~~~~~~~~iRi~~~~--~~~~l~~--al~~l~~~ 384 (387)
T PRK08960 349 TPGLDFGRHQAGQHVRFAYTQ--SLPRLQE--AVERIARG 384 (387)
T ss_pred cCchHhCCCCCCCeEEEEecC--CHHHHHH--HHHHHHHH
Confidence 532 221 24689999985 4566666 44444443
|
|
| >PRK13578 ornithine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=7.2e-15 Score=176.24 Aligned_cols=308 Identities=11% Similarity=0.044 Sum_probs=193.6
Q ss_pred HHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHH-HHHCCcEEEEEcCCCC
Q 001989 634 FNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPAT-AAMCGMKIVSVGTDAK 712 (985)
Q Consensus 634 ~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~-a~~~G~~vv~v~~d~~ 712 (985)
+.|.|+.+|++||.+...|..|++|+|+.++++++. .++|+||++++.|-+.... ..+.|++.++++...+
T Consensus 176 i~eAq~~AA~~fgAd~tyFlvNGTS~gn~a~i~a~~--------~~Gd~VLvdRN~HKSv~hgaLiLsGa~PVYl~P~~n 247 (720)
T PRK13578 176 AKDAQKHAAKVFNADKTYFVLNGTSASNKVVTNALL--------TPGDLVLFDRNNHKSNHHGALIQAGATPVYLETARN 247 (720)
T ss_pred HHHHHHHHHHHhCCCceEEEeCChhHHHHHHHHHhc--------CCCCEEEeecccHHHHHHHHHHHcCCeEEEeecccc
Confidence 778999999999999988888988888887777653 4789999999999887775 7899999999976442
Q ss_pred -----CCCCHHH-----HHHHHHhcCCC-------EEEEEEEcCCCccccccCHHHHHHH-HHHcCCEEEEEcccccccc
Q 001989 713 -----GNINIEE-----LRKAAEANRDN-------LSTLMVTYPSTHGVYEEGIDEICKI-IHDNGGQVYMDGANMNAQV 774 (985)
Q Consensus 713 -----g~iD~e~-----L~~~i~~~~~~-------t~~Vvv~~pn~~G~i~~di~eI~~l-a~~~galliVD~a~~~~~~ 774 (985)
|.++.+. ++++|.++.++ .+++++++|++.|++. |+++|+++ +|.++ .++||+||. ++.
T Consensus 248 ~~Gi~g~I~~~~~~~~~i~~~i~~~~p~~~~~~~p~k~vvit~pTYdG~~y-di~~I~~~~~h~~~-~llvDEAhg-ah~ 324 (720)
T PRK13578 248 PFGFIGGIDAHCFDEEYLREQIREVAPERADEARPFRLAVIQLGTYDGTIY-NARQVVDKIGHLCD-YILFDSAWV-GYE 324 (720)
T ss_pred ccCCcCCCChHHccHHHHHHHHHhcCccccccccCceEEEEECCCCcceee-cHHHHHHHhhccCC-cEEEeCcch-hhh
Confidence 4567555 99999865222 6899999999999999 99999998 68888 999999983 232
Q ss_pred CCCC--------CCccCCc----EEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCC
Q 001989 775 GLTS--------PGYIGAD----VCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTI 842 (985)
Q Consensus 775 ~l~~--------pg~~g~D----i~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i 842 (985)
.|.. ..+.|+| +++.|.||+++. --...+|-++....+.- .+.+ +..+..........
T Consensus 325 ~F~p~~~~~p~~al~~GaD~p~i~v~QStHKtL~a-----lTQaS~LHvk~~~i~g~-~~~v----~~~r~~~al~m~qS 394 (720)
T PRK13578 325 QFIPMMADCSPLLLELNENDPGIFVTQSVHKQQAG-----FSQTSQIHKKDNHIKGQ-ARYC----PHKRLNNAFMLHAS 394 (720)
T ss_pred ccCcccccCChhhhhcCCCCCCeEEEEChhhcchh-----hhhHhhhhcCCcccccc-cccC----CHHHHHHHHHHHcC
Confidence 2211 1356899 999999999852 11344554443221100 0000 00000000000001
Q ss_pred CCcchhhhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHh-hc--cCCeeec------------------------
Q 001989 843 AAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRL-EK--HYPILFR------------------------ 895 (985)
Q Consensus 843 ~s~~~g~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L-~~--g~~l~~~------------------------ 895 (985)
.|..|...+.+-.|...+.. ..| ++..++..+.+..++++| +. ++++..+
T Consensus 395 TSPsY~LmASLDva~~~m~~--~~G-~~l~~~~i~~a~~~R~~l~~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~~w~ 471 (720)
T PRK13578 395 TSPFYPLFAALDVNAKMHEG--ESG-RRLWMECVKLGIEARKLILARCKLIRPFIPPVVDGKPWQDYPTEQIASDLRFFS 471 (720)
T ss_pred CChHHHHHHHHHHHHHHHHH--hhC-HHHHHHHHHHHHHHHHHHHHhCCCeeecccccccccccccCchhhhcccccccc
Confidence 12223333333333333332 223 234455666677777776 32 3333210
Q ss_pred ---CCC--------------CceeeEEEEEecCcc------ccCCCCHHHHHHHHHHCCCccCCCCCCCCCEEEEeccCC
Q 001989 896 ---GVN--------------GTVAHEFIVDLRGLK------NTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTES 952 (985)
Q Consensus 896 ---~~~--------------~~~~~~~iv~~~~~~------~~~g~~~~~v~~~L~~~Gi~~~~~~~p~~~~lris~t~~ 952 (985)
+.. ++. -+.+..+++. .+.|+.+..+.+.|.++||.+-... ...+.+-++..
T Consensus 472 ~~p~~~whgf~~~~~~~~~lDP~--KltI~t~G~~~~~G~~~~~Gipg~~l~~~L~e~gI~~E~~d---~~~vL~l~s~g 546 (720)
T PRK13578 472 FEPGEKWHGFEGYAEDQYFVDPC--KLLLTTPGIDAETGEYEDFGIPATILANYLRENGIVPEKCD---LNSILFLLTPA 546 (720)
T ss_pred cccCccccccccccccccccCCc--eEEEEcCCcCcccccccccCccHHHHHHHHHHcCCEEEecC---CCeEEEEeCCC
Confidence 000 111 1223333221 1224558899999988899875433 36788888889
Q ss_pred CCHHHHHHHHccCChhHHHH
Q 001989 953 ESKSWTGIVMLSSPSEKKLH 972 (985)
Q Consensus 953 ~t~eeId~~~~~~~l~~~~~ 972 (985)
+|++++++ +++.|.++.+
T Consensus 547 ~t~~~~~~--Lv~aL~~f~~ 564 (720)
T PRK13578 547 EDMAKLQQ--LVAMLARFEK 564 (720)
T ss_pred CCHHHHHH--HHHHHHHHHH
Confidence 99999999 6667776644
|
|
| >PRK03158 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=9.5e-15 Score=167.35 Aligned_cols=280 Identities=13% Similarity=0.102 Sum_probs=180.9
Q ss_pred HHHHHHHHHHhCCCccceecCcHHH-HHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcCCCCC
Q 001989 635 NNLGEWLCTITGFDSFSLQPNAGAA-GEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKG 713 (985)
Q Consensus 635 ~e~~~~la~l~G~~~~~~~~~sGa~-a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~d~~g 713 (985)
.++++.++++++.+...+..++|++ +. ..+++.+. .++++|+++++.++.+...+...|++++.+|.+ ++
T Consensus 67 ~~lr~~ia~~~~~~~~~i~~t~G~~~~l---~~~~~~~~-----~~gd~v~~~~p~y~~~~~~~~~~g~~~~~~~~~-~~ 137 (359)
T PRK03158 67 PELRTKVAKHLGVDEEQLLFGAGLDEVI---QMISRALL-----NPGTNTVMAEPTFSQYRHNAIIEGAEVREVPLK-DG 137 (359)
T ss_pred HHHHHHHHHHhCCCHHHEEECCCHHHHH---HHHHHHHh-----CCCCEEEEcCCCHHHHHHHHHHcCCeEEEEecC-CC
Confidence 4677888999998776665555554 33 23333332 367899998876665556677889999999986 67
Q ss_pred CCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccCHHHHHHHHHH--cCCEEEEEccccccc-cCC-CCC----CccCC
Q 001989 714 NINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHD--NGGQVYMDGANMNAQ-VGL-TSP----GYIGA 784 (985)
Q Consensus 714 ~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~di~eI~~la~~--~galliVD~a~~~~~-~~l-~~p----g~~g~ 784 (985)
.+|+++++++++ +++++|++++| |++|.+. +.++|.++++. +|+++++|+++.... .+. ..+ ...+-
T Consensus 138 ~~d~~~l~~~~~---~~~~~v~i~~p~NPtG~~~-~~~~l~~~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~ 213 (359)
T PRK03158 138 GHDLEAMLKAID---EQTKIVWICNPNNPTGTYV-NHEELLSFLESVPSHVLVVLDEAYYEYVTAEDYPDTLPLLEKYEN 213 (359)
T ss_pred CcCHHHHHHhcC---CCCCEEEEeCCCCCCCCCC-CHHHHHHHHHhCCCCcEEEEECchHhhcCCcccccHHHHHHhcCC
Confidence 899999999887 78889999999 5799998 78999998887 599999999974211 110 000 12234
Q ss_pred cEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhc
Q 001989 785 DVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMG 864 (985)
Q Consensus 785 Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg 864 (985)
.+++.|+.|+|+.| |.++|++++++++.+.+... + .+.+++ .....++.+++. .
T Consensus 214 vi~~~S~SK~~g~~----GlRiG~~v~~~~~~~~~~~~------------~--~~~~~~------~~~q~~~~~~l~--~ 267 (359)
T PRK03158 214 LIVLRTFSKAYGLA----ALRVGYGIASEELIEKLNIA------------R--PPFNTT------RIAQYAAIAALE--D 267 (359)
T ss_pred EEEEEechHhhcCc----chhhehhcCCHHHHHHHHHh------------c--CCCCCC------HHHHHHHHHHhc--C
Confidence 57778888988543 67789999887665443211 0 011111 122222333332 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCC-CCCCC
Q 001989 865 SKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTM-SWPVP 942 (985)
Q Consensus 865 ~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~-~~p~~ 942 (985)
.+-+++..+...++.+++.+.|++ ++.+ . ++.+. + +.+.++ .+..++.+.|.++||.+... .+..+
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-~~~g~-~--i~~~~~-------~~~~~~~~~l~~~gv~v~~g~~f~~~ 335 (359)
T PRK03158 268 QAFLKECVEKNAEGLEQYYAFCKEYGLFY-Y-PSQTN-F--IFVDTG-------RDANELFEALLKKGYIVRSGAALGFP 335 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCee-C-CCcCc-E--EEEECC-------CCHHHHHHHHHHCCeEEeeCCCCCCC
Confidence 222344444456667777787876 3333 2 22222 2 234432 35788999999999987542 23345
Q ss_pred CEEEEeccCCCCHHHHHHHHccCChhHH
Q 001989 943 GTLMIEPTESESKSWTGIVMLSSPSEKK 970 (985)
Q Consensus 943 ~~lris~t~~~t~eeId~~~~~~~l~~~ 970 (985)
+++||++ .+.+|+++ ++++|+++
T Consensus 336 ~~iRi~~---~~~~~~~~--l~~al~~~ 358 (359)
T PRK03158 336 TGVRITI---GLKEQNDK--IIELLKEL 358 (359)
T ss_pred CeEEEec---CCHHHHHH--HHHHHHHh
Confidence 8999997 58999999 66777654
|
|
| >PRK05942 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.9e-14 Score=167.00 Aligned_cols=281 Identities=16% Similarity=0.161 Sum_probs=173.5
Q ss_pred hhhHHHHHHHHHHHHHHHhCCC--cc-ceecCcH-HHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCc
Q 001989 627 AQGYQEMFNNLGEWLCTITGFD--SF-SLQPNAG-AAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGM 702 (985)
Q Consensus 627 ~~G~~~~~~e~~~~la~l~G~~--~~-~~~~~sG-a~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~ 702 (985)
.+|..++.+.+.+++.+.+|.+ .. .+..++| ++|... +++.+. .++|+|+++++.|+.+...+...|+
T Consensus 72 ~~G~~~lr~aia~~~~~~~~~~~~~~~~i~vt~G~~~al~~---~~~~~~-----~~gd~Vlv~~P~y~~~~~~~~~~g~ 143 (394)
T PRK05942 72 FEGTASFRQAITDWYHRRYGVELDPDSEALPLLGSKEGLTH---LALAYV-----NPGDVVLVPSPAYPAHFRGPLIAGA 143 (394)
T ss_pred CCCCHHHHHHHHHHHHHHHCCCcCCCCeEEEccChHHHHHH---HHHHhC-----CCCCEEEEcCCCCcchHHHHHHcCC
Confidence 3676666666667776666743 33 3544444 445433 233321 4789999999888777767788999
Q ss_pred EEEEEcCCCC--CCCCHHHHHHHHHhcCCCEEEEEEEcC-CCcccccc--CHHHHHHHHHHcCCEEEEEccccccc-c--
Q 001989 703 KIVSVGTDAK--GNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEE--GIDEICKIIHDNGGQVYMDGANMNAQ-V-- 774 (985)
Q Consensus 703 ~vv~v~~d~~--g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~--di~eI~~la~~~galliVD~a~~~~~-~-- 774 (985)
+++.+|++.+ +.+|+++++++++ +++++|++++| |++|.+.+ ++++|.++|+++|+++++|+++.... .
T Consensus 144 ~~~~v~~~~~~~~~~d~~~l~~~~~---~~~k~i~l~~P~NPtG~~~s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~ 220 (394)
T PRK05942 144 QIYPIILKPENDWLIDLSSIPEEVA---QQAKILYFNYPSNPTTATAPREFFEEIVAFARKYEIMLVHDLCYAELAFDGY 220 (394)
T ss_pred EEEEeecCCccCCccCHHHHHHhcc---ccceEEEEcCCCCCCCCcCCHHHHHHHHHHHHHcCeEEEEeccchhhccCCC
Confidence 9999998643 5699999999987 78999999998 57999861 38899999999999999999863211 0
Q ss_pred ---CCC-CCCccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhh
Q 001989 775 ---GLT-SPGYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSA 850 (985)
Q Consensus 775 ---~l~-~pg~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~ 850 (985)
.+. .++.....+.+.|+.|.|+. .|.++|++++++++.+.+.... .....++.+ ..+
T Consensus 221 ~~~~~~~~~~~~~~~i~~~SfSK~~~~----~GlRiG~i~~~~~l~~~l~~~~------------~~~~~~~~~--~~q- 281 (394)
T PRK05942 221 QPTSLLEIPGAKDIGVEFHTLSKTYNM----AGWRVGFVVGNRHIIQGLRTLK------------TNLDYGIFS--ALQ- 281 (394)
T ss_pred CCCChhhCCCccccEEEEecchhccCC----hhhheeeeecCHHHHHHHHHHH------------hhcccCCCH--HHH-
Confidence 110 01111234667888898854 3678999998877665442110 000001111 001
Q ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHH-H
Q 001989 851 LILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRL-M 928 (985)
Q Consensus 851 ~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L-~ 928 (985)
.++..++. ...+.+++..++..++.+++.+.|++ ++.+ ..+.+..+ +.++++ .+.+..+++.++ .
T Consensus 282 ---~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~--~~~~~~~f--~~~~~~-----~~~~~~~~~~~~l~ 348 (394)
T PRK05942 282 ---KAAETALQ-LPDSYLQQVQERYRTRRDFLIQGLGELGWNI--PPTKATMY--LWVPCP-----VGMGSTDFALNVLQ 348 (394)
T ss_pred ---HHHHHHHh-CcHHHHHHHHHHHHHHHHHHHHHHHHCCCee--cCCCeeeE--EEEECC-----CCCCHHHHHHHHHH
Confidence 11122232 22445556666667778888888876 4433 22222222 235554 135667777654 5
Q ss_pred HCCCccCC-CCCC--CCCEEEEecc
Q 001989 929 DYGFHGPT-MSWP--VPGTLMIEPT 950 (985)
Q Consensus 929 ~~Gi~~~~-~~~p--~~~~lris~t 950 (985)
++||.+.. ..|. .++++||++.
T Consensus 349 ~~gV~v~~g~~f~~~~~~~iRis~~ 373 (394)
T PRK05942 349 KTGVVVTPGNAFGEGGEGYVRISLI 373 (394)
T ss_pred HCCEEEeCChhhCcCCCCeEEEEec
Confidence 78998743 2232 2479999995
|
|
| >PRK03321 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.8e-15 Score=171.32 Aligned_cols=282 Identities=12% Similarity=0.098 Sum_probs=181.7
Q ss_pred HHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcCCCCC
Q 001989 634 FNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKG 713 (985)
Q Consensus 634 ~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~d~~g 713 (985)
..++++.+++++|.+...+..++|++.. ...+++.. ..++++|+++.+.+..++..++..|++++.+|.++++
T Consensus 59 ~~~lr~~ia~~~~~~~~~I~~~~G~~~~--l~~~~~~~-----~~~gd~Vli~~p~y~~~~~~~~~~g~~~~~v~~~~~~ 131 (352)
T PRK03321 59 AVELRAALAEHLGVPPEHVAVGCGSVAL--CQQLVQAT-----AGPGDEVIFAWRSFEAYPILVQVAGATPVQVPLTPDH 131 (352)
T ss_pred HHHHHHHHHHHhCcCHHHEEECCCHHHH--HHHHHHHh-----cCCCCEEEeCCCCHHHHHHHHHHcCCEEEEccCCCCC
Confidence 3577888999999877666666676532 12222322 1478899998775555556678899999999997678
Q ss_pred CCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccCHHHHHHHHHH--cCCEEEEEccccccc-cCCCCCC----ccCCc
Q 001989 714 NINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHD--NGGQVYMDGANMNAQ-VGLTSPG----YIGAD 785 (985)
Q Consensus 714 ~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~di~eI~~la~~--~galliVD~a~~~~~-~~l~~pg----~~g~D 785 (985)
.+|+++++++++ +++++|++++| |++|.+. |.++|.++|+. +|+++++|+++..-. .+...+. ....+
T Consensus 132 ~~~~~~l~~~~~---~~~~~v~l~~p~NPtG~~~-~~~~l~~l~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~ 207 (352)
T PRK03321 132 THDLDAMAAAIT---DRTRLIFVCNPNNPTGTVV-TPAELARFLDAVPADVLVVLDEAYVEYVRDDDVPDGLELVRDHPN 207 (352)
T ss_pred CCCHHHHHHhhc---cCCCEEEEeCCCCCcCCCc-CHHHHHHHHHhCCCCeEEEEechHHHhccCcCCCcHHHHHhhCCC
Confidence 899999999997 68899999998 5799998 89999999997 589999999873111 1100010 11123
Q ss_pred -EEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhc
Q 001989 786 -VCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMG 864 (985)
Q Consensus 786 -i~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg 864 (985)
+++.|+.|.|++| |-++|++++++++.+.+.... ....++ .....++.+.+. .
T Consensus 208 vi~~~S~SK~~g~~----GlRiG~~v~~~~~~~~~~~~~--------------~~~~~s------~~~q~~a~~~l~--~ 261 (352)
T PRK03321 208 VVVLRTFSKAYGLA----GLRVGYAVGHPEVIAALRKVA--------------VPFSVN------SLAQAAAIASLA--A 261 (352)
T ss_pred EEEEecchHHhhhH----HHhhhhhcCCHHHHHHHHHhc--------------CCCCCC------HHHHHHHHHHhc--C
Confidence 4566788888543 567999998877665442110 001111 111112223332 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCCCCCCC
Q 001989 865 SKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPG 943 (985)
Q Consensus 865 ~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~~p~~~ 943 (985)
.+.+.+..++..+..+++.+.|++ ++.+ .++.+. + +.+.+. .+..++.+.|.++||.+.... .+
T Consensus 262 ~~~~~~~~~~~~~~r~~~~~~L~~~~~~~--~~~~g~-~--i~i~l~-------~~~~~~~~~l~~~gI~v~~~~---~~ 326 (352)
T PRK03321 262 EDELLERVDAVVAERDRVRAALRAAGWTV--PPSQAN-F--VWLPLG-------ERTADFAAAAAEAGVVVRPFA---GE 326 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCcc--CCCCCC-E--EEEeCC-------CCHHHHHHHHHHCCEEEEccC---CC
Confidence 233444445555666778888876 4332 222222 2 334432 357889999999999876432 35
Q ss_pred EEEEeccCCCCHHHHHHHHccCChhHHHH
Q 001989 944 TLMIEPTESESKSWTGIVMLSSPSEKKLH 972 (985)
Q Consensus 944 ~lris~t~~~t~eeId~~~~~~~l~~~~~ 972 (985)
.+||++ .+.+++++ ++++|+++++
T Consensus 327 ~iRi~~---~~~~~~~~--~~~al~~~~~ 350 (352)
T PRK03321 327 GVRVTI---GAPEENDA--FLRAARAWRA 350 (352)
T ss_pred cEEEee---CCHHHHHH--HHHHHHHHhc
Confidence 699997 79999999 7777776654
|
|
| >PLN02187 rooty/superroot1 | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.3e-14 Score=167.67 Aligned_cols=362 Identities=14% Similarity=0.109 Sum_probs=206.4
Q ss_pred HHHHHHHHHHhccc-cCcccccccccccccCCCc----cccccc-----cccccccccCCCCchhhhhhHHHHHHHHHHH
Q 001989 571 HELLRYIHLLQSKE-LSLCHSMIPLGSCTMKLNA----TTEMMP-----VTWPSFANIHPFAPADQAQGYQEMFNNLGEW 640 (985)
Q Consensus 571 ~e~~~~l~~l~~~~-~~~~~~~~~lG~~t~~~~~----~~~~~~-----~~~~~f~~~~p~~p~e~~~G~~~~~~e~~~~ 640 (985)
..++.....+.++- ......+++||.+.|.+.+ ..+... +.... .+.|.| .+|..++.+.+.++
T Consensus 47 ~~~~~~~~~~~~~~~~~~~~~vi~l~~Gdp~~~p~~~~~~~~~~~~~~~~~~~~---~~~Y~~---~~G~~~lR~aiA~~ 120 (462)
T PLN02187 47 VTLRGVIYMLFDNCGKDVNKTILPLGHGDPSVYPCFRTCIEAEDAVVDVLRSGK---GNSYGP---GAGILPARRAVADY 120 (462)
T ss_pred chHhhHHHHHHhhcccCCCCCeEECCCCCCCCCCCCCCCHHHHHHHHHHHhCCC---CCCCCC---CCChHHHHHHHHHH
Confidence 34555555553321 1123457899988665322 111111 11122 223433 35766555555555
Q ss_pred HHHHhC--CCccceecCcH-HHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcCC--CCCCC
Q 001989 641 LCTITG--FDSFSLQPNAG-AAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTD--AKGNI 715 (985)
Q Consensus 641 la~l~G--~~~~~~~~~sG-a~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~d--~~g~i 715 (985)
+.+.+| .+...+..++| ++|...++. .+. .++|+|+++++.+..+...++..|++++.++.. .++.+
T Consensus 121 ~~~~~~~~~~~~~I~it~G~~~al~~~~~---~l~-----~pGd~Vlv~~P~y~~y~~~~~~~g~~~~~~~l~~~~~~~~ 192 (462)
T PLN02187 121 MNRDLPHKLTPEDIFLTAGCNQGIEIVFE---SLA-----RPNANILLPRPGFPHYDARAAYSGLEVRKFDLLPEKEWEI 192 (462)
T ss_pred HHHhcCCCCCcccEEEeCCHHHHHHHHHH---Hhc-----CCCCEEEEeCCCCccHHHHHHHcCCEEEEEeCccccCCcc
Confidence 554444 34445544444 455533333 321 478999999988777777788999999999874 35789
Q ss_pred CHHHHHHHHHhcCCCEEEEEEEcC-CCccccc--cCHHHHHHHHHHcCCEEEEEcccccc-ccC--CCCCCccC---CcE
Q 001989 716 NIEELRKAAEANRDNLSTLMVTYP-STHGVYE--EGIDEICKIIHDNGGQVYMDGANMNA-QVG--LTSPGYIG---ADV 786 (985)
Q Consensus 716 D~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~--~di~eI~~la~~~galliVD~a~~~~-~~~--l~~pg~~g---~Di 786 (985)
|+++|+++++ +++++|++++| |++|.+. ..+++|.++|+++|+++++|+++..- ..+ +.....+. .=+
T Consensus 193 d~~~l~~~~~---~~~~~v~i~nP~NPTG~v~s~e~l~~i~~~a~~~~i~iI~DE~Y~~l~f~~~~~~s~~~~~~~~~vi 269 (462)
T PLN02187 193 DLEGIEAIAD---ENTVAMVVINPNNPCGNVYSHDHLKKVAETARKLGIMVISDEVYDRTIFGDNPFVSMGKFASIVPVL 269 (462)
T ss_pred CHHHHHHhcC---CCcEEEEEeCCCCCCCCccCHHHHHHHHHHHHHCCCEEEEeccccccccCCCCceeHHHhccCCcEE
Confidence 9999999987 78899999999 4799986 24889999999999999999987421 111 00111111 125
Q ss_pred EEeCCcccccccCCCCCCceEEEEEc-cc-c---cCcCCCCccccCCCCCCCCCCCCCCCC--CCcchhhhHHHHHHHHH
Q 001989 787 CHLNLHKTFCIPHGGGGPGMGPIGVK-KH-L---APFLPSHPVVSTGGIPAPEKSQPLGTI--AAAPWGSALILPISYTY 859 (985)
Q Consensus 787 ~~~s~hK~l~~p~g~GGPg~G~i~~~-~~-l---~~~lp~~~~g~~~~~~~~~~~~~~~~i--~s~~~g~~~~~~~a~a~ 859 (985)
++.|+.|+|++| |.++|++++. ++ . ...+... + ...++ +.+...+. ++.++
T Consensus 270 ~l~SfSK~f~~p----GlRiG~~v~~~p~~~~~~~~~~~~~------------~--~~~~~~~~~s~~~Q~----a~~~~ 327 (462)
T PLN02187 270 TLAGISKGWVVP----GWKIGWIALNDPEGVFETTKVLQSI------------K--QNLDVTPDPATIIQA----ALPAI 327 (462)
T ss_pred EEecchhhcCCc----cceeEEEEecCchhHHHHHHHHHHH------------H--HhccccCCCCHHHHH----HHHHH
Confidence 667888988765 7899999984 22 1 1111100 0 00011 11111121 12223
Q ss_pred HHHhcHHHHHHHHHHHHHHHHHHHHHhhccCCee-ecCCCCceeeEEEEEecCccccCCC-CHHHHHHHH-HHCCCccCC
Q 001989 860 IAMMGSKGLTEASKIAILNANYMAKRLEKHYPIL-FRGVNGTVAHEFIVDLRGLKNTAGI-EPEDVAKRL-MDYGFHGPT 936 (985)
Q Consensus 860 l~~lg~eGl~~~~~~~~~~a~~l~~~L~~g~~l~-~~~~~~~~~~~~iv~~~~~~~~~g~-~~~~v~~~L-~~~Gi~~~~ 936 (985)
+..-..+-+++..+...++++++.+.|++...+. +..+.+..+ +.++++.- ...+. +..+++..| .++|+.+..
T Consensus 328 L~~~~~~~l~~~~~~l~~~r~~l~~~L~~~~~~~~~~~P~gg~f--l~~~l~~~-~~~~~~~~~~~~~~ll~~~gV~v~p 404 (462)
T PLN02187 328 LEKADKNFFAKKNKILKHNVDLVCDRLKDIPCVVCPKKPESCTY--LLTKLELS-LMDNIKDDIDFCVKLAREENLVFLP 404 (462)
T ss_pred HhcCcHHHHHHHHHHHHHHHHHHHHHHhhCCCCcCCCCCCEeEE--EEeecChh-hCCCCCCHHHHHHHHHhhCCEEEEC
Confidence 3221233455555667778888999998621111 112222222 22333200 00122 355665554 778987643
Q ss_pred -CCCCCCCEEEEeccCCCCHHHHHHHHccCChhHHHHhhccCC
Q 001989 937 -MSWPVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRLKMGR 978 (985)
Q Consensus 937 -~~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~~~~~ 978 (985)
..|..++++||++.. ..+.++. .++.|.+.++++....
T Consensus 405 G~~fg~~~~iRis~~~--~~e~l~~--al~rL~~~l~~~~~~~ 443 (462)
T PLN02187 405 GDALGLKNWMRITIGV--EAHMLED--ALERLKGFCTRHAKKT 443 (462)
T ss_pred ccccCCCCeEEEEeCC--CHHHHHH--HHHHHHHHHHHhhhcc
Confidence 234446899999974 5788888 7788888888766544
|
|
| >PRK05968 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=5e-15 Score=170.86 Aligned_cols=275 Identities=14% Similarity=0.116 Sum_probs=176.8
Q ss_pred HHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccH----HHHHHCCcEEEEEcC
Q 001989 634 FNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNP----ATAAMCGMKIVSVGT 709 (985)
Q Consensus 634 ~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~----~~a~~~G~~vv~v~~ 709 (985)
..++++.+++++|.+.+ +.+++|+.|+..+++++. .+||+||++...|+... ..+...|+++++++.
T Consensus 65 ~~~le~~lA~l~g~~~a-v~~~sG~~Ai~~al~al~--------~~Gd~Vl~~~~~y~~t~~~~~~~~~~~G~~v~~vd~ 135 (389)
T PRK05968 65 VRAFEEMLAKLEGAEDA-RGFASGMAAISSTVLSFV--------EPGDRIVAVRHVYPDAFRLFETILKRMGVEVDYVDG 135 (389)
T ss_pred HHHHHHHHHHHhCCCcE-EEECCHHHHHHHHHHHHh--------CCCCEEEEeCCCchHHHHHHHHHHHHcCceEEEeCC
Confidence 55889999999999765 445678776654444321 47889999877666432 234568999999886
Q ss_pred CCCCCCCHHHHHHHHHhcCCCEEEEEEEcCC-CccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCccCCcEEE
Q 001989 710 DAKGNINIEELRKAAEANRDNLSTLMVTYPS-THGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIGADVCH 788 (985)
Q Consensus 710 d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~pn-~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~g~Di~~ 788 (985)
+ |++++++++ ++|++|++++|+ ..+.+. |+++|+++||++|+++++|+++... ....|..+|+|+++
T Consensus 136 ~-----d~~~l~~~i----~~tklV~ie~pt~~~~~~~-dl~~i~~la~~~gi~vivD~a~a~~--~~~~p~~~g~Divv 203 (389)
T PRK05968 136 R-----DEEAVAKAL----PGAKLLYLESPTSWVFELQ-DVAALAALAKRHGVVTMIDNSWASP--VFQRPITLGVDLVI 203 (389)
T ss_pred C-----CHHHHHHhc----ccCCEEEEECCCCCCCcHH-HHHHHHHHHHHcCCEEEEECCCcch--hccCchhcCCcEEE
Confidence 3 899999887 367899999985 567776 8999999999999999999987432 23456678999999
Q ss_pred eCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCC-CCCCcchhhhHHHHHHHHHHHHhcHHH
Q 001989 789 LNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLG-TIAAAPWGSALILPISYTYIAMMGSKG 867 (985)
Q Consensus 789 ~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~-~i~s~~~g~~~~~~~a~a~l~~lg~eG 867 (985)
.|++|+|+.| |++++|+++.++++.+.+..... ...+ .+. + ..||..+. +-+.
T Consensus 204 ~S~tK~l~g~---~~~~gG~i~~~~~~~~~l~~~~~------------~~~g~~~~------~---~~A~~~l~--~L~t 257 (389)
T PRK05968 204 HSASKYLGGH---SDTVAGVVAGSKEHIARINAEAY------------PYLGAKLS------P---FEAWLLLR--GLRT 257 (389)
T ss_pred eeccccccCC---CCeEEEEEEECHHHHHHHHHHHH------------HhCCCCCC------h---HHHHHHHc--ccCc
Confidence 9999999632 34567888888765543321000 0011 111 1 11233333 3345
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCC---eeecCCCC-------ceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccC--
Q 001989 868 LTEASKIAILNANYMAKRLEKHYP---ILFRGVNG-------TVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGP-- 935 (985)
Q Consensus 868 l~~~~~~~~~~a~~l~~~L~~g~~---l~~~~~~~-------~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~-- 935 (985)
+..+.++..+++.++++.|++... +.+++-.. .....+.+.+. .+.+..++.++|...++.++
T Consensus 258 l~~r~~~~~~~a~~la~~L~~~p~v~~v~~p~l~~~~~~~~~g~g~~~sf~~~-----~~~~~~~f~~~L~~~~~~~s~G 332 (389)
T PRK05968 258 LPLRMKAHEASALEIARRLKAHPVVERVCHPALANHPPAGLSGTSGLFSFIFR-----EGIDVRAFADALKLFRLGVSWG 332 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCChHHhCCCCceEEEEEEC-----CHHHHHHHHHhCCccEEecCCC
Confidence 667777888889999999986332 22332110 11113344443 13456778888866554322
Q ss_pred C-CC------------C--------CC-CCEEEEeccCCCCHHHHHH
Q 001989 936 T-MS------------W--------PV-PGTLMIEPTESESKSWTGI 960 (985)
Q Consensus 936 ~-~~------------~--------p~-~~~lris~t~~~t~eeId~ 960 (985)
. .+ . .+ ++.+|+|+...++++=|+.
T Consensus 333 ~~~slv~p~~~~~~~~~~~~~~~~~gi~~~liR~SvGlE~~~dl~~d 379 (389)
T PRK05968 333 GHESLVVPAEVVLQQKAQPNSAARFGVSPRSVRLHVGLEGTEALWAD 379 (389)
T ss_pred CCCceeeeCcccccccCCHHHHHhcCCCCCeEEEEeccCCHHHHHHH
Confidence 1 00 0 01 4689999988776555555
|
|
| >TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.5e-14 Score=166.55 Aligned_cols=213 Identities=24% Similarity=0.264 Sum_probs=155.8
Q ss_pred HHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCch---
Q 001989 213 LLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDLK--- 289 (985)
Q Consensus 213 i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~~--- 289 (985)
..++++.+|+++|.+. +.++++|++++.++++++ . ++||+||++...|+.....+..+++..|++++++|.+
T Consensus 56 ~~~le~~la~l~g~~~--~~~~~sG~~Ai~~al~al-~--~~Gd~Vl~~~~~~~~t~~~~~~~~~~~g~~v~~v~~~d~~ 130 (380)
T TIGR01325 56 VAAFEERIAALEGAER--AVATATGMSAIQAALMTL-L--QAGDHVVASRSLFGSTVGFISEILPRFGIEVSFVDPTDLN 130 (380)
T ss_pred HHHHHHHHHHHhCCCc--EEEECCHHHHHHHHHHHH-h--CCCCEEEEecCCcchHHHHHHHHHHHhCCEEEEECCCCHH
Confidence 4567799999999865 667899999888877665 2 3789999999999888777776667789999998764
Q ss_pred hhhc-cCCCEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCCCCCcccceEEEecC-ccccccCCCC
Q 001989 290 DIDY-KSGDVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKPPGELGADIVVGSA-QRFGVPMGYG 366 (985)
Q Consensus 290 ~l~~-l~~~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~~~~~~GaDi~v~s~-k~lg~P~~~G 366 (985)
++++ +++++++|++++| |++|.+.|+++|+++||++|++++|| +.++.+....|.++|+||++.|. |.++++ |
T Consensus 131 ~l~~~i~~~tklV~le~p~np~g~~~dl~~I~~la~~~gi~livD-~a~~~~~~~~pl~~g~Divv~S~sK~l~g~---g 206 (380)
T TIGR01325 131 AWEAAVKPNTKLVFVETPSNPLGELVDIAALAELAHAIGALLVVD-NVFATPVLQQPLKLGADVVVYSATKHIDGQ---G 206 (380)
T ss_pred HHHHhcCCCceEEEEECCCCCCCeeeCHHHHHHHHHHcCCEEEEE-CCCcccccCCchhhCCCEEEeeccceecCC---C
Confidence 4555 7788999999998 78999999999999999999999994 34444445556788999999998 777542 1
Q ss_pred CCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcchHHHH
Q 001989 367 GPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTI 446 (985)
Q Consensus 367 GP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i 446 (985)
-.-+|++..++++.+.+-. .++..|.. .++.. + ++...+.+-++.+
T Consensus 207 ~~~gG~vv~~~~~~~~l~~-------------------------~~~~~g~~----~~p~~---a--~~~l~~l~tl~~r 252 (380)
T TIGR01325 207 RVMGGVIAGSEELMAEVAV-------------------------YLRHTGPA----MSPFN---A--WVLLKGLETLSLR 252 (380)
T ss_pred CeEEEEEEeCHHHHHHHHH-------------------------HHHhhCCC----CCHHH---H--HHHHhccCcHHHH
Confidence 1224777777776554310 00111111 12221 1 2245566677778
Q ss_pred HHHHHHHHHHHHHHHhcCCCeE
Q 001989 447 AQRVHGLAGTFALGLKKLGTVE 468 (985)
Q Consensus 447 ~~~~~~~a~~l~~~L~~~g~~~ 468 (985)
.++..+++.++.+.|++.++++
T Consensus 253 ~~~~~~~a~~la~~L~~~p~v~ 274 (380)
T TIGR01325 253 MQKQFDSALAIAEWLQAQPQVQ 274 (380)
T ss_pred HHHHHHHHHHHHHHHHcCCCcc
Confidence 8888999999999999886454
|
This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis. |
| >PRK05967 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.8e-14 Score=164.91 Aligned_cols=212 Identities=17% Similarity=0.108 Sum_probs=156.7
Q ss_pred HHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc---h
Q 001989 213 LLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL---K 289 (985)
Q Consensus 213 i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~---~ 289 (985)
...+++.++.|.|.+. ..++.+|++++.++++++ + ++||+||+++..++.+...+...++..|+++++++. +
T Consensus 66 ~~~Le~~la~le~~~~--~v~~sSG~aAi~~~l~al-l--~~GD~Vlv~~~~Y~~~~~l~~~~l~~~Gi~v~~vd~~~~e 140 (395)
T PRK05967 66 TDALCKAIDALEGSAG--TILVPSGLAAVTVPFLGF-L--SPGDHALIVDSVYYPTRHFCDTMLKRLGVEVEYYDPEIGA 140 (395)
T ss_pred HHHHHHHHHHHhCCCC--EEEECcHHHHHHHHHHHh-c--CCCCEEEEccCCcHHHHHHHHHHHHhcCeEEEEeCCCCHH
Confidence 3346688999988664 567777888888877765 3 389999999999999888776667789999999986 3
Q ss_pred hhhc-cCCCEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCCCCCcccceEEEecC-ccccccCCCC
Q 001989 290 DIDY-KSGDVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKPPGELGADIVVGSA-QRFGVPMGYG 366 (985)
Q Consensus 290 ~l~~-l~~~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~~~~~~GaDi~v~s~-k~lg~P~~~G 366 (985)
++++ ++++|++|++++| |++|.+.||++|+++||++|++++|| +.++.++...|.+|||||++.|+ |.+++ .|
T Consensus 141 ~l~~al~~~TklV~lesPsNP~l~v~dl~~I~~la~~~g~~vvVD-~t~a~p~~~~pl~~GaDivv~S~tKy~~G---h~ 216 (395)
T PRK05967 141 GIAKLMRPNTKVVHTEAPGSNTFEMQDIPAIAEAAHRHGAIVMMD-NTWATPLYFRPLDFGVDISIHAATKYPSG---HS 216 (395)
T ss_pred HHHHhcCcCceEEEEECCCCCCCcHHHHHHHHHHHHHhCCEEEEE-CCccCceecChhHcCCCEEEEecccccCC---CC
Confidence 4676 8889999999987 78999999999999999999999995 45566667789999999999999 65542 23
Q ss_pred CCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcchHHHH
Q 001989 367 GPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTI 446 (985)
Q Consensus 367 GP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i 446 (985)
+--+|.+..++++.+++- ..++..|.. + ++. ..|+...|.+-|.-+
T Consensus 217 d~~~G~v~~~~~~~~~l~-------------------------~~~~~~G~~-~---~p~-----da~l~~rgl~Tl~lR 262 (395)
T PRK05967 217 DILLGTVSANEKCWPQLL-------------------------EAHGTLGLC-A---GPD-----DTYQILRGLRTMGIR 262 (395)
T ss_pred CeeEEEEEcCHHHHHHHH-------------------------HHHHHcCCC-C---CHH-----HHHHHHcCcccHHHH
Confidence 323466666655433320 001111211 0 111 134567777778888
Q ss_pred HHHHHHHHHHHHHHHhcCCCe
Q 001989 447 AQRVHGLAGTFALGLKKLGTV 467 (985)
Q Consensus 447 ~~~~~~~a~~l~~~L~~~g~~ 467 (985)
.++..+++..+++.|++...+
T Consensus 263 ~~~~~~na~~lA~~L~~hp~v 283 (395)
T PRK05967 263 LEHHRKSALEIARWLEGRPDV 283 (395)
T ss_pred HHHHHHHHHHHHHHHHhCCCC
Confidence 889999999999999987534
|
|
| >TIGR00709 dat 2,4-diaminobutyrate 4-transaminases | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.7e-14 Score=166.38 Aligned_cols=328 Identities=13% Similarity=0.126 Sum_probs=195.0
Q ss_pred ccccccccCCCccccccccccccccccCCCCchhhhhhHHHHHHHHHHHHHHHhCCC----ccceecCcHHHHHHHHHHH
Q 001989 592 IPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFD----SFSLQPNAGAAGEYAGLMV 667 (985)
Q Consensus 592 ~~lG~~t~~~~~~~~~~~~~~~~f~~~~p~~p~e~~~G~~~~~~e~~~~la~l~G~~----~~~~~~~sGa~a~~a~l~a 667 (985)
..+|++++.+..+...+.......... .+. .+...++.+.|++++... ...|+.+||++|++++++.
T Consensus 51 ~~lGh~~p~i~~ai~~q~~~~~~~~~~-~~~--------~~~~~~lae~L~~~~p~~~~~~~~~f~~~sGsEA~e~Alkl 121 (442)
T TIGR00709 51 LALGHNHPNMKQKILDYLQSGLPLHTL-DLT--------TPLKDAFIEALLNIIPKRKMDYKLQFPGPSGADAVEAAIKL 121 (442)
T ss_pred hcCCCCCHHHHHHHHHHHHhccCcccc-ccC--------cHHHHHHHHHHHHhCCCcCCCccEEEeCCCHHHHHHHHHHH
Confidence 468998887776655543221111110 011 123446778888887532 2235568999999999999
Q ss_pred HHHHHHhcCCCCCCEEEE-cCCCCcccHHHHHHCC-------c-----EEEEEcCCCCCCC--------CH----HHHHH
Q 001989 668 IRAYHKARGDHHRNVCII-PVSAHGTNPATAAMCG-------M-----KIVSVGTDAKGNI--------NI----EELRK 722 (985)
Q Consensus 668 ir~~~~~~g~~~~~~IIv-~~~~Hg~~~~~a~~~G-------~-----~vv~v~~d~~g~i--------D~----e~L~~ 722 (985)
+|.| +++.+||. ..++||.........| . .+..+|.....+. +. +.+++
T Consensus 122 Ar~~------tgr~~Ii~~~~~yHG~t~~~~s~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (442)
T TIGR00709 122 AKTY------TGRTNVISFSGGFHGMTIGALAVTGNLFAKNAVGMLMPGVQFMPYPHEYRCPFGIGGEAGSNASIEYFEN 195 (442)
T ss_pred HHHh------cCCCeEEEEcCCcCCchHHHHhhcCChhhhccCCCCCCCcEEeCCCccccccccCCchhHHHHHHHHHHH
Confidence 9886 23456665 7789998766654322 1 2333443211111 11 22344
Q ss_pred HHHh---cCCCEEEEEEEcC-CCcccccc---CHHHHHHHHHHcCCEEEEEccccccccCCCCCCcc--------CCcEE
Q 001989 723 AAEA---NRDNLSTLMVTYP-STHGVYEE---GIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYI--------GADVC 787 (985)
Q Consensus 723 ~i~~---~~~~t~~Vvv~~p-n~~G~i~~---di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~--------g~Di~ 787 (985)
.++. ..+++++|+++.. +..|++.+ -+++|.++|+++|+++|+|+++ .++.+.|.+ -+|++
T Consensus 196 ~~~~~~~~~~~iaavi~Epi~g~~G~~~~~~~yl~~lr~lc~~~g~llI~DEV~----tGfGRtG~~~a~~~~gv~PDiv 271 (442)
T TIGR00709 196 FIEDVESGVDKPAAVILEAIQGEGGVVAAPSEWLQKIREVTRKHDIKLILDEVQ----AGFGRSGTMFAFEHAGIEPDFV 271 (442)
T ss_pred HHHhhccCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccc----cCCCCCCchhHHHHcCCCCcEE
Confidence 4431 1246888888763 44565532 4899999999999999999886 344444432 26998
Q ss_pred EeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHH
Q 001989 788 HLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKG 867 (985)
Q Consensus 788 ~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eG 867 (985)
++ .|.++ +| ..+|.+++++++....+.. ..+++.|+++.++++.+.|..+..++
T Consensus 272 ~~--gK~l~----~G-~Pigav~~~~~~~~~~~~~-------------------~~~T~~gnpla~aaa~a~L~~i~~~~ 325 (442)
T TIGR00709 272 VM--SKAVG----GG-LPLAVLLIAPEFDAWQPAG-------------------HTGTFRGNQLAMVTGTEALNYWKDDN 325 (442)
T ss_pred EE--ccccc----CC-cccEEEEEchHHhccCCCc-------------------CCCCCCcCHHHHHHHHHHHHHHHhcC
Confidence 85 37764 34 4567777776643222110 01234567777888888888887665
Q ss_pred HHHHHHHHHHHHHHHHHHhhc---cCCee--ecCCCCceeeEEEEEecCc---ccc---C--CC-CHHHHHHHHHHCCCc
Q 001989 868 LTEASKIAILNANYMAKRLEK---HYPIL--FRGVNGTVAHEFIVDLRGL---KNT---A--GI-EPEDVAKRLMDYGFH 933 (985)
Q Consensus 868 l~~~~~~~~~~a~~l~~~L~~---g~~l~--~~~~~~~~~~~~iv~~~~~---~~~---~--g~-~~~~v~~~L~~~Gi~ 933 (985)
+.+ +..++.++|.++|++ .++++ +.+. + .+ +.+.+..- ++. . .. ....+...+.++|++
T Consensus 326 l~~---~~~~~g~~l~~~L~~l~~~~~~v~~vrG~-G-l~--~~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gvl 398 (442)
T TIGR00709 326 LAQ---NAQERGERITSFLDDMIKEHPCIGNVRGR-G-LM--QGIMIVDERQSKDATGAYPRDCELAAAIQGACFENGLL 398 (442)
T ss_pred HHH---HHHHHHHHHHHHHHHHHHhCCCeeeeecc-c-eE--EEEEEccCcccccccccCCcchHHHHHHHHHHHHCCeE
Confidence 544 566777888888864 22321 1121 2 22 12222100 000 0 00 135677788899998
Q ss_pred cCCCCCCCCCEEEEeccCCCCHHHHHHHHccCChhHHHHhh
Q 001989 934 GPTMSWPVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRL 974 (985)
Q Consensus 934 ~~~~~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~ 974 (985)
+..... ..+.||+.|+..+|++|||+ +++++++++.++
T Consensus 399 ~~~~~~-~~~~l~~~Ppl~it~~ei~~--~~~~l~~~l~~~ 436 (442)
T TIGR00709 399 LETGGR-EGEVFRLLCPITIDQEECEE--GISRFKQAVEEA 436 (442)
T ss_pred EeecCC-CCCEEEEECCCCCCHHHHHH--HHHHHHHHHHHH
Confidence 753221 14799999999999999999 778888888654
|
This family consists of L-diaminobutyric acid transaminases. This general designation covers both 2.6.1.76 (diaminobutyrate-2-oxoglutarate transaminase, which uses glutamate as the amino donor in DABA biosynthesis), and 2.6.1.46 (diaminobutyrate--pyruvate transaminase, which uses alanine as the amino donor). Most members with known function are 2.6.1.76, and at least some annotations as 2.6.1.46 in current databases at time of model revision are incorrect. A distinct branch of this family contains examples of 2.6.1.76 nearly all of which are involved in ectoine biosynthesis. A related enzyme is 4-aminobutyrate aminotransferase (EC 2.6.1.19), also called GABA transaminase. These enzymes all are pyridoxal phosphate-containing class III aminotransferase. |
| >TIGR01825 gly_Cac_T_rel pyridoxal phosphate-dependent acyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.4e-14 Score=167.43 Aligned_cols=277 Identities=17% Similarity=0.186 Sum_probs=181.1
Q ss_pred HhhhHHHHHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEE
Q 001989 205 IAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVV 284 (985)
Q Consensus 205 ~sqg~l~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~ 284 (985)
..+|..+...++++.+++++|.+. ..+..+|+.++.+++.++ + ++||+|+++...|+++...++. .|++++
T Consensus 72 ~~~g~~~l~~~l~~~l~~~~g~~~--~i~~~sG~~a~~~a~~~~-~--~~gd~vi~~~~~~~~~~~~~~~----~g~~~~ 142 (385)
T TIGR01825 72 TIAGTLRLHEELEEKLAKFKKTEA--ALVFQSGFNTNQGVLSAL-L--RKGDIVLSDELNHASIIDGLRL----TKATKK 142 (385)
T ss_pred cccCCcHHHHHHHHHHHHHhCCCc--EEEECcHHHHHHHHHHHh-C--CCCCEEEEEccccHHHHHHHHh----cCCceE
Confidence 456778888899999999999753 344455565555444443 2 3889999999999999877653 355544
Q ss_pred E---eCchhhhc-c----CCCEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCCC---------CCc
Q 001989 285 V---SDLKDIDY-K----SGDVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKP---------PGE 346 (985)
Q Consensus 285 ~---v~~~~l~~-l----~~~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~~---------~~~ 346 (985)
. +|++++++ + ++++++|++.++ |.+|.+.|+++|.++||++|+++++| +..+.+.+.. .-.
T Consensus 143 ~~~~~d~~~l~~~l~~~~~~~~~~v~~~~v~~~tG~~~~~~~i~~l~~~~~~~li~D-e~~~~~~~~~~~~~~~~~~~~~ 221 (385)
T TIGR01825 143 IYKHADMDDLDRVLRENPSYGKKLIVTDGVFSMDGDVAPLPEIVELAERYGAVTYVD-DAHGSGVMGEAGRGTVHHFGLE 221 (385)
T ss_pred EeCCCCHHHHHHHHHhhccCCCeEEEEecCCcCCCCccCHHHHHHHHHHhCCEEEEE-CcccccCcCCCCCccHhhcCCC
Confidence 4 45556655 3 246888877665 78999999999999999999999994 3444332221 113
Q ss_pred ccceEEEecC-ccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhH
Q 001989 347 LGADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQA 425 (985)
Q Consensus 347 ~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~ 425 (985)
.+.||++++. |+|+. ++ |+++.++++++.+... ..+ |.+ ++ ..++..
T Consensus 222 ~~~~i~~~s~sK~~~~------~g-G~~~~~~~~~~~~~~~---------~~~-~~~-------------~~--~~~~~~ 269 (385)
T TIGR01825 222 DKVDIQVGTLSKAIGV------VG-GYAAGHKELIEYLKNR---------ARP-FLF-------------ST--AQPPAV 269 (385)
T ss_pred cCCcEEEEeccHHhhc------CC-CEEecCHHHHHHHHHh---------Ccc-ccc-------------cC--CCCHHH
Confidence 5788988997 88753 22 6888787776654100 000 100 11 001122
Q ss_pred HHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCCCcceEEEecCC---HHHHHHHHHHcCceeeee
Q 001989 426 LLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDTVKVKCAD---AHAIASAAYKIEMNLRVV 502 (985)
Q Consensus 426 l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~---~~~v~~~L~~~GI~~~~~ 502 (985)
..+..+++ ..+... .++.++..++.+++.+.|+++| +++..+ ..+.+.+..+. ..++.+.|.++||.++..
T Consensus 270 ~~a~~~al--~~~~~~--~~~~~~~~~~~~~l~~~L~~~g-~~~~~~-~~~~~~~~~~~~~~~~~~~~~L~~~gi~v~~~ 343 (385)
T TIGR01825 270 VAALAAAV--DELQRS--PELMERLWDNTRFFKAGLGKLG-YDTGGS-ETPITPVVIGDEKAAQEFSRRLFDEGIFAQSI 343 (385)
T ss_pred HHHHHHHH--HHHhcC--HHHHHHHHHHHHHHHHHHHHcC-CCCCCC-CCCEEEEEECCHHHHHHHHHHHHHCCcEEccc
Confidence 33333443 222221 2466777788999999999887 776532 11223333332 678999999999987431
Q ss_pred -------cCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 503 -------DSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 503 -------~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
....+|++++.++|+|||++++++|++
T Consensus 344 ~~~~~~~~~~~iRi~~~~~~~~e~i~~~~~~l~~ 377 (385)
T TIGR01825 344 VFPTVPRGTARIRNIPTAEHTKDDLDQALDAYEK 377 (385)
T ss_pred CCCCCCCCCceEEEEEcCCCCHHHHHHHHHHHHH
Confidence 125799999999999999999999974
|
This model represents an enzyme subfamily related to three known enzymes; it appears closest to glycine C-acteyltransferase, shows no overlap with it in species distribution, and may share that function. The three closely related enzymes are glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase), 5-aminolevulinic acid synthase, and 8-amino-7-oxononanoate synthase. All transfer the R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from coenzyme A to an amino acid (Gly, Gly, Ala, respectively), with release of CO2 for the latter two reactions. |
| >PRK07777 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.8e-14 Score=166.74 Aligned_cols=297 Identities=15% Similarity=0.092 Sum_probs=184.7
Q ss_pred hhHHHHHHHHHHHHHHHhCCCc--c-c-eecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcE
Q 001989 628 QGYQEMFNNLGEWLCTITGFDS--F-S-LQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMK 703 (985)
Q Consensus 628 ~G~~~~~~e~~~~la~l~G~~~--~-~-~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~ 703 (985)
+|..++.+.+.+++.+.+|.+. . . +..++|++|..+++.++ . .++|+|+++.+.|+.+...++..|.+
T Consensus 61 ~g~~~lr~~ia~~~~~~~g~~~~~~~~i~~t~G~~~al~~~~~~~---~-----~~gd~vli~~p~y~~~~~~~~~~g~~ 132 (387)
T PRK07777 61 PGIPELRAAIAAQRRRRYGLEYDPDTEVLVTVGATEAIAAAVLGL---V-----EPGDEVLLIEPYYDSYAAVIAMAGAH 132 (387)
T ss_pred CCCHHHHHHHHHHHHHHhCCCCCCCCcEEEeCCcHHHHHHHHHHh---c-----CCCCEEEEeCCCchhhHHHHHHCCCE
Confidence 5666666666677777778652 2 3 44455565664433322 1 46789999888777777777889999
Q ss_pred EEEEcCCCC---CCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccc--cCHHHHHHHHHHcCCEEEEEccccccc--c-
Q 001989 704 IVSVGTDAK---GNINIEELRKAAEANRDNLSTLMVTYP-STHGVYE--EGIDEICKIIHDNGGQVYMDGANMNAQ--V- 774 (985)
Q Consensus 704 vv~v~~d~~---g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~--~di~eI~~la~~~galliVD~a~~~~~--~- 774 (985)
++.++.+++ +.+|+++|+++++ +++++|++++| |++|.+. .++++|.++|+++|+++++|.++.... +
T Consensus 133 ~~~~~~~~~~~~~~~d~~~l~~~~~---~~~~~v~l~~p~NPtG~~~~~~~~~~l~~~~~~~~~~li~De~y~~~~~~~~ 209 (387)
T PRK07777 133 RVPVPLVPDGRGFALDLDALRAAVT---PRTRALIVNSPHNPTGTVLTAAELAAIAELAVEHDLLVITDEVYEHLVFDGA 209 (387)
T ss_pred EEEeecCCccCCCcCCHHHHHHhcC---cccEEEEEcCCCCCCCccCCHHHHHHHHHHHHhcCcEEEEeccchhcccCCC
Confidence 999998654 4699999999987 68899999998 5789874 258999999999999999999873211 0
Q ss_pred ---CCCC-CCccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhh
Q 001989 775 ---GLTS-PGYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSA 850 (985)
Q Consensus 775 ---~l~~-pg~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~ 850 (985)
.+.. ++..+.++++.|++|+|+.| |.++|++++++++...+.... .......+ ++ .+.
T Consensus 210 ~~~~~~~~~~~~~~~i~~~S~SK~~g~~----GlRiG~~~~~~~l~~~~~~~~------------~~~~~~~~-~~-~q~ 271 (387)
T PRK07777 210 RHLPLATLPGMRERTVTISSAAKTFNVT----GWKIGWACGPAPLIAAVRAAK------------QYLTYVGG-AP-FQP 271 (387)
T ss_pred CcccHhhCCCCcCcEEEEeechhhccCc----CceeEEEecCHHHHHHHHHHH------------hhcccCCC-CH-HHH
Confidence 1111 12234678899999998654 667999998876654332110 00000111 11 011
Q ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHH-
Q 001989 851 LILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLM- 928 (985)
Q Consensus 851 ~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~- 928 (985)
++..++. .+.+-+++..+...++++++.+.|++ ++++. .+.+.++ +.+.++.. ...+..++++.|.
T Consensus 272 ----~~~~~l~-~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~--~~~g~~~--~~~~~~~~---~~~~~~~~~~~l~~ 339 (387)
T PRK07777 272 ----AVAHALD-HEDAWVAALRDSLQAKRDRLAAGLAEAGFEVH--DSAGTYF--LCADPRPL---GYDDGTEFCRALPE 339 (387)
T ss_pred ----HHHHHHh-CCcHHHHHHHHHHHHHHHHHHHHHHhCCCCcc--CCCcceE--EEeccccc---CCCCHHHHHHHHHH
Confidence 1112222 12333445555677888889999976 44432 2223222 22343211 0236788999996
Q ss_pred HCCCccCCCC-C-----CCCCEEEEeccCCCCHHHHHHHHccCChhH
Q 001989 929 DYGFHGPTMS-W-----PVPGTLMIEPTESESKSWTGIVMLSSPSEK 969 (985)
Q Consensus 929 ~~Gi~~~~~~-~-----p~~~~lris~t~~~t~eeId~~~~~~~l~~ 969 (985)
++||.+.... | +..+.+||++.. +++++++ .++.|.+
T Consensus 340 ~~gv~v~pg~~f~~~~~~~~~~~Ri~~~~--~~~~l~~--~l~~l~~ 382 (387)
T PRK07777 340 RVGVAAIPMSVFYDPADAWNHLVRFAFCK--RDDTLDE--AIRRLRA 382 (387)
T ss_pred hCCEEEeCchHhCCCCcCCCCeEEEEecC--CHHHHHH--HHHHHHH
Confidence 5799864321 2 124689999864 6888888 5555544
|
|
| >PRK09276 LL-diaminopimelate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.1e-14 Score=164.68 Aligned_cols=288 Identities=15% Similarity=0.143 Sum_probs=178.6
Q ss_pred hhHHHHHHHHHHHHHHHhCCC--cc-ceecCcHH-HHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcE
Q 001989 628 QGYQEMFNNLGEWLCTITGFD--SF-SLQPNAGA-AGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMK 703 (985)
Q Consensus 628 ~G~~~~~~e~~~~la~l~G~~--~~-~~~~~sGa-~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~ 703 (985)
+|..++.+.+.+++.+.+|.+ .. .+..++|+ ++.. .+++.+. .++|+|+++++.++.+...++..|++
T Consensus 69 ~G~~~lr~aia~~~~~~~g~~~~~~~~ii~t~G~~~~i~---~~~~~~~-----~~gd~Vl~~~P~y~~~~~~~~~~g~~ 140 (385)
T PRK09276 69 EGMLEFRKAVADWYKRRFGVELDPETEVISLIGSKEGIA---HIPLAFV-----NPGDVVLVPDPGYPVYKIGTIFAGGE 140 (385)
T ss_pred CCcHHHHHHHHHHHHHHhCCCCCCCCcEEEccCcHHHHH---HHHHHhC-----CCCCEEEEcCCCCcChHHHHHHcCCE
Confidence 565566666666666655653 33 35554554 4442 3333331 47889999998887777778899999
Q ss_pred EEEEcCCCC--CCCCHHHHHHHHHhcCCCEEEEEEEcC-CCcccccc--CHHHHHHHHHHcCCEEEEEccccccc-cCCC
Q 001989 704 IVSVGTDAK--GNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEE--GIDEICKIIHDNGGQVYMDGANMNAQ-VGLT 777 (985)
Q Consensus 704 vv~v~~d~~--g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~--di~eI~~la~~~galliVD~a~~~~~-~~l~ 777 (985)
++.+|.+.+ +.+|++++++++. +++++|++++| |++|.+.+ .+++|+++|+++|+++++|.++.... .+..
T Consensus 141 ~~~v~~~~~~g~~~d~~~l~~~~~---~~~~~v~l~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~ 217 (385)
T PRK09276 141 PYFMPLKEENGFLPDLDAIPEDVA---KKAKLMFINYPNNPTGAVADLEFFEEVVDFAKKYDIIVCHDAAYSEIAYDGYK 217 (385)
T ss_pred EEEEecCCCCCCcCCHHHHHHhcc---ccceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEecchhheecCCCC
Confidence 999998643 5689999998886 68899999998 57999872 36899999999999999999874211 1110
Q ss_pred CC------CccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhH
Q 001989 778 SP------GYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSAL 851 (985)
Q Consensus 778 ~p------g~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~ 851 (985)
.+ ...+..+++.|+.|.|+.| |.++|++++++++.+.+.... ......+. ..
T Consensus 218 ~~~~~~~~~~~~~~i~~~S~SK~~g~~----GlRiG~~i~~~~l~~~~~~~~------------~~~~~~~~------~~ 275 (385)
T PRK09276 218 PPSFLEVPGAKDVGIEFHSLSKTYNMT----GWRIGFAVGNADLIAGLGKVK------------SNVDSGVF------QA 275 (385)
T ss_pred CCChhccCCCcCCEEEEecchhhcCCc----chhheeeeCCHHHHHHHHHHH------------hhccCCCC------HH
Confidence 01 1122347778888988543 667999998877655432100 00000111 11
Q ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHH-H
Q 001989 852 ILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLM-D 929 (985)
Q Consensus 852 ~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~-~ 929 (985)
...++..++.. ..+-+++..++..++++++.+.|++ ++.+. .+.+.++ +.+.++ .+.+..+++++|. +
T Consensus 276 ~q~~~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~--~~~~~~~--~~v~~~-----~~~~~~~l~~~ll~~ 345 (385)
T PRK09276 276 IQEAGIAALNG-PQEVVEELRKIYQERRDILVEGLRKLGLEVE--PPKATFY--VWAPVP-----KGYTSAEFATLLLDK 345 (385)
T ss_pred HHHHHHHHHcC-cHHHHHHHHHHHHHHHHHHHHHHHhCCCccc--CCCcceE--EEEECC-----CCCCHHHHHHHHHHh
Confidence 11112222321 2333455555667778889998887 33332 2222222 345554 2457788998876 5
Q ss_pred CCCccCCC-CCC--CCCEEEEeccCCCCHHHHHH
Q 001989 930 YGFHGPTM-SWP--VPGTLMIEPTESESKSWTGI 960 (985)
Q Consensus 930 ~Gi~~~~~-~~p--~~~~lris~t~~~t~eeId~ 960 (985)
+||.+... .|. .++++||++. .+++++..
T Consensus 346 ~gi~v~~g~~f~~~~~~~~Ris~~--~~~~~l~~ 377 (385)
T PRK09276 346 AGVVVTPGNGFGEYGEGYFRIALT--VPDERIEE 377 (385)
T ss_pred CCEEECCchhhCCCCCCeEEEEeC--CCHHHHHH
Confidence 79987542 222 2479999986 35666666
|
|
| >PRK07036 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=3.2e-14 Score=167.51 Aligned_cols=338 Identities=14% Similarity=0.176 Sum_probs=200.6
Q ss_pred ccccccccCCCccccccccccccccccCCCCchhhhhhHHHHHHHHHHHHHHHhCCCc-cceecCcHHHHHHHHHHHHHH
Q 001989 592 IPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFDS-FSLQPNAGAAGEYAGLMVIRA 670 (985)
Q Consensus 592 ~~lG~~t~~~~~~~~~~~~~~~~f~~~~p~~p~e~~~G~~~~~~e~~~~la~l~G~~~-~~~~~~sGa~a~~a~l~air~ 670 (985)
..+|++++.+..+...+.........+..+. .+...++.+.|++++..+. ..++.+||++|++++++.+|.
T Consensus 63 ~~lGh~~p~v~~Ai~~q~~~~~~~~~~~~~~--------~~~~~~lae~L~~~~p~~~~~v~f~~sGseAve~AlklAr~ 134 (466)
T PRK07036 63 VNVGYGREEMADAIADQARRLPYYTPFGDMT--------NAPAAELAAKLAELAPGDLNHVFLTTGGSTAVDSALRFVHY 134 (466)
T ss_pred hcCCCCCHHHHHHHHHHHHhCcccccccccC--------CHHHHHHHHHHHHhCCCCcCEEEEeCCchHHHHHHHHHHHH
Confidence 4578887777766554432211111110011 1224467788888874322 356789999999999999998
Q ss_pred HHHhcCCCCCCEEEE-cCCCCcccHHHHHHCC------------cEEEEEcCCCC----CCC--------CHHHHHHHHH
Q 001989 671 YHKARGDHHRNVCII-PVSAHGTNPATAAMCG------------MKIVSVGTDAK----GNI--------NIEELRKAAE 725 (985)
Q Consensus 671 ~~~~~g~~~~~~IIv-~~~~Hg~~~~~a~~~G------------~~vv~v~~d~~----g~i--------D~e~L~~~i~ 725 (985)
|...+|..++.+||. ...+||....+....| ..+..+|.... ... .++.+++.+.
T Consensus 135 ~~~~~g~t~r~~Ii~~~~~YHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~i~ 214 (466)
T PRK07036 135 YFNVRGRPAKKHIITRGDAYHGSTYLTASLTGKAADRTEFDYASDLVHHLSSPNPYRRPAGMSEAAFCDFLVDEFEDKIL 214 (466)
T ss_pred HHHhcCCCCccEEEEEcCccCCccHhhhcccCCCcccccccCCCCCcEEecCCcccccccCCChHHHHHHHHHHHHHHHH
Confidence 765555334566775 6679997754432211 11333443110 011 1345666665
Q ss_pred h-cCCCEEEEEEEcC-CCccccccC---HHHHHHHHHHcCCEEEEEccccccccCCCCCCc-------c--CCcEEEeCC
Q 001989 726 A-NRDNLSTLMVTYP-STHGVYEEG---IDEICKIIHDNGGQVYMDGANMNAQVGLTSPGY-------I--GADVCHLNL 791 (985)
Q Consensus 726 ~-~~~~t~~Vvv~~p-n~~G~i~~d---i~eI~~la~~~galliVD~a~~~~~~~l~~pg~-------~--g~Di~~~s~ 791 (985)
. ..+++++|+++-. ...|++.+| +++|.++|+++|+++|+|+++ .|+++.|. + .+|+++++
T Consensus 215 ~~~~~~iAavi~EPv~g~gG~~~p~~~yl~~lr~lc~~~g~llI~DEV~----tGfGRtG~~~~~~~~~gv~PDivt~g- 289 (466)
T PRK07036 215 SLGADNIAAFIAEPILGSGGVIVPPPGYHARMREICRRYDILYISDEVV----TGFGRLGHFFASEAVFGIQPDIITFA- 289 (466)
T ss_pred HcCCCceEEEEEeCCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeech----hCCCcCchhhhhhhhcCCCCCEEEEc-
Confidence 3 3467889988753 345766522 899999999999999999887 33334331 2 37898774
Q ss_pred cccccccCCCCC--CceEEEEEcccccCcCCCC-ccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHHH
Q 001989 792 HKTFCIPHGGGG--PGMGPIGVKKHLAPFLPSH-PVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGL 868 (985)
Q Consensus 792 hK~l~~p~g~GG--Pg~G~i~~~~~l~~~lp~~-~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl 868 (985)
|.++ || | +|.+++++++.+.+... ..+ .. ....+++.|+++.++++.+.|..+..+++
T Consensus 290 -K~l~-----gG~~P-i~av~~~~~i~~~~~~~~~~~-----------~~-~~~~~T~~gnpl~~aaa~a~Le~i~~~~l 350 (466)
T PRK07036 290 -KGLT-----SGYQP-LGAVIISERLLDVISGPNAKG-----------NV-FTHGFTYSGHPVACAAALKNIEIMEREGL 350 (466)
T ss_pred -cccc-----cCccc-cEEEEEcHHHHHHHhcccCcC-----------cc-cccCCCCCCCHHHHHHHHHHHHHHHhCCH
Confidence 7763 34 5 55566687766543211 000 00 01123456678888888899988876654
Q ss_pred HHHHHHHHHHHHHHHHHhhcc--CCee--ecCCCCceeeEEEEEecC---ccccCCC---CHHHHHHHHHHCCCccCCCC
Q 001989 869 TEASKIAILNANYMAKRLEKH--YPIL--FRGVNGTVAHEFIVDLRG---LKNTAGI---EPEDVAKRLMDYGFHGPTMS 938 (985)
Q Consensus 869 ~~~~~~~~~~a~~l~~~L~~g--~~l~--~~~~~~~~~~~~iv~~~~---~~~~~g~---~~~~v~~~L~~~Gi~~~~~~ 938 (985)
. ++..++.++|+++|++. ++++ ..+. + .+ +.+.+.. .+..... ....+.+.+.++|+.+...
T Consensus 351 ~---~~~~~~g~~l~~~L~~l~~~~~v~~vrG~-G-l~--~~ve~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~~- 422 (466)
T PRK07036 351 C---EHVREVGPYFEERLASLRELPLVGDVRGD-H-LM--ACVECVADKGSKALLPEDIAIGQRIDRHCQERGLLVRPL- 422 (466)
T ss_pred H---HHHHHHHHHHHHHHHHhccCCCEEEEEee-c-eE--EEEEEccCccccCCCCchhHHHHHHHHHHHHCCcEEeec-
Confidence 3 46677788888888642 2221 1111 1 12 2233310 0000000 1346778888999987432
Q ss_pred CCCCCEEEEeccCCCCHHHHHHHHccCChhHHHHhh
Q 001989 939 WPVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRL 974 (985)
Q Consensus 939 ~p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~ 974 (985)
.+.++++|+...|++|||+ +++++.+++..+
T Consensus 423 ---~~~~~l~Ppl~it~~~id~--~~~~l~~al~~~ 453 (466)
T PRK07036 423 ---EHLCVLSPPLIITRAQIDE--IVAILRAAIEET 453 (466)
T ss_pred ---CCEEEEeCCCcCCHHHHHH--HHHHHHHHHHHH
Confidence 3689999999999999999 778888887665
|
|
| >PRK07050 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.1e-14 Score=168.11 Aligned_cols=212 Identities=20% Similarity=0.113 Sum_probs=155.8
Q ss_pred HHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc---hh
Q 001989 214 LNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL---KD 290 (985)
Q Consensus 214 ~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~---~~ 290 (985)
.++++.+|++.|.+ ++.+++|||+++.++++++ + ++||+||+++..|+.+...+...++..|+++++++. ++
T Consensus 68 ~~Le~~lA~l~g~~--~~l~~~sgt~Ai~~~l~al-~--~~GD~Vl~~~~~y~~~~~~~~~~~~~~Gi~v~~vd~~~~~~ 142 (394)
T PRK07050 68 LALAQRLAEIEGGR--HALLQPSGLAAISLVYFGL-V--KAGDDVLIPDNAYGPNRDHGEWLARDFGITVRFYDPLIGAG 142 (394)
T ss_pred HHHHHHHHHHhCCC--eEEEeccHHHHHHHHHHHH-h--CCCCEEEEecCCcccHHHHHHHHHHhcCeEEEEECCCCHHH
Confidence 45778999999976 4888899999888877765 3 389999999999998887766556678999999875 45
Q ss_pred hhc-cCCCEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCCCCCcccceEEEecC-ccccccCCCCC
Q 001989 291 IDY-KSGDVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKPPGELGADIVVGSA-QRFGVPMGYGG 367 (985)
Q Consensus 291 l~~-l~~~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~~~~~~GaDi~v~s~-k~lg~P~~~GG 367 (985)
+++ ++++|++|++.+| |.+|.+.|+++|+++||++|+++++| +.++.+....|.++|+||++.|. |.+++. |+
T Consensus 143 l~~~i~~~tklV~le~p~Np~~~~~di~~I~~ia~~~gi~livD-~a~a~~~~~~~l~~GaDi~v~S~tK~~~g~---~~ 218 (394)
T PRK07050 143 IADLIQPNTRLIWLEAPGSVTMEVPDVPAITAAARARGVVTAID-NTYSAGLAFKPFEHGVDISVQALTKYQSGG---SD 218 (394)
T ss_pred HHHhcCCCCeEEEEECCCCCCccHhhHHHHHHHHHHcCCEEEEE-CCcccccccCHHHcCCeEEEEECCceecCC---CC
Confidence 777 8889999999998 78999999999999999999999994 45667777778889999999998 888531 22
Q ss_pred CcEEEEEE-chhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcchHHHH
Q 001989 368 PHAAFLAT-SQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTI 446 (985)
Q Consensus 368 P~~G~l~~-~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i 446 (985)
.-.|.+.+ ++++.+++- ..|..-| +| ..+. ..|+...|.+.+..+
T Consensus 219 ~~gG~v~~~~~~~~~~~~-------------------------~~~~~~G---~~-~~~~-----~a~l~lr~l~tl~~R 264 (394)
T PRK07050 219 VLMGATITADAELHAKLK-------------------------LARMRLG---IG-VSAD-----DCSLVLRGLPSLQVR 264 (394)
T ss_pred eeEEEEEECCHHHHHHHH-------------------------HHHHhcC---CC-CCHH-----HHHHHHcCCCcHHHH
Confidence 21344444 455544430 0011111 01 0111 124455666677778
Q ss_pred HHHHHHHHHHHHHHHhcCCCeE
Q 001989 447 AQRVHGLAGTFALGLKKLGTVE 468 (985)
Q Consensus 447 ~~~~~~~a~~l~~~L~~~g~~~ 468 (985)
.++..+++.++.+.|++...+.
T Consensus 265 l~~~~~~a~~la~~L~~~p~v~ 286 (394)
T PRK07050 265 LAAHDRSALEVAEWLKARPEIA 286 (394)
T ss_pred HHHHHHHHHHHHHHHHhCCCcc
Confidence 8888899999999999874343
|
|
| >PRK15399 lysine decarboxylase LdcC; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.3e-14 Score=173.77 Aligned_cols=272 Identities=14% Similarity=0.105 Sum_probs=190.6
Q ss_pred HHHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc--
Q 001989 211 ESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL-- 288 (985)
Q Consensus 211 ~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~-- 288 (985)
..+.++|+.+|+++|++.+.+ +++|+|++..+++++.. ++||+||+++++|.|+...+. ..|++.+++++
T Consensus 195 G~i~eAe~~aA~~fgAd~tyf-vvNGTS~~n~av~~a~~---~~Gd~VLvdRN~HKSv~~aLi----lsga~PVYl~P~~ 266 (713)
T PRK15399 195 GPHLEAEEYIARTFGAEQSYI-VTNGTSTSNKIVGMYAA---PAGSTLLIDRNCHKSLAHLLM----MSDVVPIWLKPTR 266 (713)
T ss_pred hHHHHHHHHHHHHhCCCcEEE-EeCChHHHHHHHHHHhc---CCCCEEEeecccHHHHHHHHH----HcCCeeEEecccc
Confidence 568899999999999998765 66888888888888753 389999999999999998764 35888888743
Q ss_pred ----------------hhhhc-c--CCCE---eEEEEEcCCCCeeeccHHHHHHHHHhCCcEE-EEEecCcc-----ccC
Q 001989 289 ----------------KDIDY-K--SGDV---CGVLVQYPGTEGEVLDYGDFIKNAHANGVKV-VMATDLLA-----LTI 340 (985)
Q Consensus 289 ----------------~~l~~-l--~~~t---~~V~v~~pn~~G~v~di~~I~~~a~~~gall-iV~a~~~~-----lg~ 340 (985)
+.+++ + .++. +++++|+|||+|.+.|+++|++++ |+.+ +|| .+|. ...
T Consensus 267 n~~Gi~g~I~~~~~~~e~I~~~i~~~p~~~~p~~vvit~pTYdGi~yd~~~I~~~~---g~~~ilvD-EAhgah~~F~p~ 342 (713)
T PRK15399 267 NALGILGGIPRREFTRDSIEEKVAATTQAQWPVHAVITNSTYDGLLYNTDWIKQTL---DVPSIHFD-SAWVPYTHFHPI 342 (713)
T ss_pred cccCCcCCCChhhccHHHHHHHHHhCCCcCCceEEEEECCCCCceeeCHHHHHHHh---CCCEEEEe-ccchhhhhcCcc
Confidence 23333 3 2343 689999999999999999999999 6766 473 2221 111
Q ss_pred CC--CCCcc--cceEE---EecC-ccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeeccccccccc
Q 001989 341 LK--PPGEL--GADIV---VGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIR 412 (985)
Q Consensus 341 l~--~~~~~--GaDi~---v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~ir 412 (985)
+. .+-.. |+|.+ +.|. |.|++- + ++++++++.. + | +.|
T Consensus 343 ~~~~sam~~~~~aD~~i~~tQStHKtL~al-T----QaS~iHvk~~----v---------d----------------~~~ 388 (713)
T PRK15399 343 YQGKSGMSGERVPGKVIFETQSTHKMLAAF-S----QASLIHIKGE----Y---------D----------------EET 388 (713)
T ss_pred cCCcChhhCCCCCCeeeeeeeehhcccccc-c----hheeeeecCC----C---------C----------------HHH
Confidence 22 11112 68888 8888 666532 2 4577777532 1 0 000
Q ss_pred ccccCCCccchhHHHHHHHHHH--HHHhC-cchHHHHHHHHHHHHHHHHHHHhcCCC------eEEcCC-----------
Q 001989 413 RDKATSNICTAQALLANMAAMY--AVYHG-PEGLKTIAQRVHGLAGTFALGLKKLGT------VEVQGL----------- 472 (985)
Q Consensus 413 re~atsni~t~~~l~a~~aa~~--l~~~g-~~Gl~~i~~~~~~~a~~l~~~L~~~g~------~~~~~~----------- 472 (985)
.+.+-.-.-|+++.+.++|++- ..++. +.| +++.++..+.+..++++|.++++ |+++.+
T Consensus 389 ~n~a~~m~~STSPsY~LmASLD~a~~~m~~~~G-~~l~~~~i~~a~~fR~~l~~~~~~~~~w~f~~~~~~~~~~~~~w~l 467 (713)
T PRK15399 389 FNEAFMMHTSTSPSYPIVASVETAAAMLRGNPG-KRLINRSVERALHFRKEVQRLREESDGWFFDIWQPENVDEAECWPV 467 (713)
T ss_pred HHHHHHHHcCCCcHHHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHHHHHhccccccCceeeecCccccCCccceec
Confidence 1111112234578889999883 23333 344 56788888999999999988754 455421
Q ss_pred ----C------------Ccce--EEEecC-----------C--HHHHHHHHHHcCceeeeecCCeEEEEeccCCCHHHHH
Q 001989 473 ----P------------FFDT--VKVKCA-----------D--AHAIASAAYKIEMNLRVVDSNTVTASFDETTTLEDVD 521 (985)
Q Consensus 473 ----~------------~~~~--~~~~~~-----------~--~~~v~~~L~~~GI~~~~~~~~~lris~t~~~t~edId 521 (985)
. ..++ +++.++ + +..+.+.|+++||.++..+...+++.++..+|+++++
T Consensus 468 ~p~~~whgf~~~~~~~~~lDP~KltI~t~g~~~~g~~~~~Gi~g~~l~~~L~e~gI~~E~~d~~~vL~l~s~g~t~~~~~ 547 (713)
T PRK15399 468 APGEQWHGFKDADADHMFLDPVKVTILTPGMDEQGNMSEEGIPAALVAKFLDERGIVVEKTGPYNLLFLFSIGIDKTKAM 547 (713)
T ss_pred CCCcccccccccccccccCCCceEEEEecCcccccccccCCCCHHHHHHHHHHcCCEEEecCCCeEEEEeCCCCCHHHHH
Confidence 0 1232 445443 3 7789999999999999888889999999999999999
Q ss_pred HHHHHHhC
Q 001989 522 KLFIVFAG 529 (985)
Q Consensus 522 ~li~aL~~ 529 (985)
+|+++|.+
T Consensus 548 ~L~~aL~~ 555 (713)
T PRK15399 548 GLLRGLTE 555 (713)
T ss_pred HHHHHHHH
Confidence 99999974
|
|
| >PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal) | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.4e-14 Score=163.49 Aligned_cols=213 Identities=22% Similarity=0.194 Sum_probs=153.5
Q ss_pred HHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc---h
Q 001989 213 LLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL---K 289 (985)
Q Consensus 213 i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~---~ 289 (985)
...+++.||+|.|.+. +.++++|.+|+.++++++. . +||+||+++..+......++.+...+|+++.++|. +
T Consensus 57 ~~~le~~la~Le~g~~--a~~~~SGmaAi~~~l~~ll-~--~Gd~iv~~~~~Y~~t~~~~~~~l~~~gv~v~~~d~~d~~ 131 (386)
T PF01053_consen 57 VRALEQRLAALEGGED--ALLFSSGMAAISAALLALL-K--PGDHIVASDDLYGGTYRLLEELLPRFGVEVTFVDPTDLE 131 (386)
T ss_dssp HHHHHHHHHHHHT-SE--EEEESSHHHHHHHHHHHHS----TTBEEEEESSSSHHHHHHHHHCHHHTTSEEEEESTTSHH
T ss_pred HHHHHHHHHHhhcccc--eeeccchHHHHHHHHHhhc-c--cCCceEecCCccCcchhhhhhhhcccCcEEEEeCchhHH
Confidence 3456789999999865 7788999999988887762 3 79999999999999999998878889999999987 4
Q ss_pred hhhc-cCCCEeEEEEEcC-CCCeeeccHHHHHHHHHhCC-cEEEEEecCccccCCCCCCcccceEEEecC-ccccccCCC
Q 001989 290 DIDY-KSGDVCGVLVQYP-GTEGEVLDYGDFIKNAHANG-VKVVMATDLLALTILKPPGELGADIVVGSA-QRFGVPMGY 365 (985)
Q Consensus 290 ~l~~-l~~~t~~V~v~~p-n~~G~v~di~~I~~~a~~~g-alliV~a~~~~lg~l~~~~~~GaDi~v~s~-k~lg~P~~~ 365 (985)
++++ ++++|++|++..| |++..+.||++|+++||++| ++++|| +.++-+++..|-++||||++.|+ |.+++.
T Consensus 132 ~l~~~l~~~t~~v~~EspsNP~l~v~Dl~~i~~~a~~~g~~~~vVD-nT~atp~~~~pL~~GaDivv~S~TKyl~Gh--- 207 (386)
T PF01053_consen 132 ALEAALRPNTKLVFLESPSNPTLEVPDLEAIAKLAKEHGDILVVVD-NTFATPYNQNPLELGADIVVHSATKYLSGH--- 207 (386)
T ss_dssp HHHHHHCTTEEEEEEESSBTTTTB---HHHHHHHHHHTTT-EEEEE-CTTTHTTTC-GGGGT-SEEEEETTTTTTTS---
T ss_pred HHHhhccccceEEEEEcCCCcccccccHHHHHHHHHHhCCceEEee-ccccceeeeccCcCCceEEEeeccccccCC---
Confidence 5666 8899999999998 89999999999999999999 999994 57777777888999999999998 777532
Q ss_pred CCCcEEEEEEch--hhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcchH
Q 001989 366 GGPHAAFLATSQ--EYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGL 443 (985)
Q Consensus 366 GGP~~G~l~~~~--~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl 443 (985)
|.--+|.+.++. ++.+++- ..++.-| +. +...- .|+...|-+-+
T Consensus 208 sdv~~G~vv~~~~~~~~~~l~-------------------------~~~~~~G--~~-----~~p~d--a~ll~rgl~Tl 253 (386)
T PF01053_consen 208 SDVMGGAVVVNGSSELYDRLR-------------------------EFRRLLG--AT-----LSPFD--AWLLLRGLRTL 253 (386)
T ss_dssp SSE-EEEEEESSHHHHHHHHH-------------------------HHHHHHT---B-------HHH--HHHHHHHHTTH
T ss_pred cceeeEEEEECchhhhhhhhc-------------------------chhhhcC--cc-----chHHH--HHHHhcCCCcH
Confidence 222257777664 4443320 0011111 01 11111 23345555667
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCeE
Q 001989 444 KTIAQRVHGLAGTFALGLKKLGTVE 468 (985)
Q Consensus 444 ~~i~~~~~~~a~~l~~~L~~~g~~~ 468 (985)
..+.++..++|..+++.|++...++
T Consensus 254 ~~R~~~~~~nA~~lA~~L~~hp~V~ 278 (386)
T PF01053_consen 254 PLRMERQNENAEALAEFLEEHPKVK 278 (386)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSTTEE
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 7778888999999999999985465
|
Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B .... |
| >COG0001 HemL Glutamate-1-semialdehyde aminotransferase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.8e-14 Score=159.48 Aligned_cols=295 Identities=16% Similarity=0.194 Sum_probs=186.8
Q ss_pred HHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEE-cCCCCcccHHHHHHC------------
Q 001989 634 FNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCII-PVSAHGTNPATAAMC------------ 700 (985)
Q Consensus 634 ~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv-~~~~Hg~~~~~a~~~------------ 700 (985)
.-++.++++++++.-...-++|||++|+.+++..+|+| ++|++||. ...+||.+.......
T Consensus 95 Ei~~Aell~~~~p~~e~vrfvnSGTEAtmsAiRlARa~------TgR~kIikF~G~YHG~~D~~lv~agsg~~t~g~p~s 168 (432)
T COG0001 95 EVELAELLIERVPSIEKVRFVNSGTEATMSAIRLARAY------TGRDKIIKFEGCYHGHSDSLLVKAGSGAATLGSPSS 168 (432)
T ss_pred HHHHHHHHHHhcCcccEEEEecchhHHHHHHHHHHHHh------hCCCeEEEEcCCCCCCccHHHhhcCcCcccCCCCCC
Confidence 34677888888876333345789999998888888876 57788886 667899887664321
Q ss_pred -Cc------EEEEEcCCCCCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCcccccc---CHHHHHHHHHHcCCEEEEEccc
Q 001989 701 -GM------KIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEE---GIDEICKIIHDNGGQVYMDGAN 769 (985)
Q Consensus 701 -G~------~vv~v~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~---di~eI~~la~~~galliVD~a~ 769 (985)
|+ .+..+|.| |++++++++++..++.++|+++-. ...|++.| -+++|.++|+++|+++|.|++.
T Consensus 169 ~Gvp~~~a~~ti~~~yN-----D~~al~~~~~~~g~~IAaVIvEPv~gn~g~i~p~~~Fl~~Lr~lt~e~G~lLI~DEVi 243 (432)
T COG0001 169 PGVPADVAKHTLVLPYN-----DLEALEEAFEEYGDDIAAVIVEPVAGNMGVVPPEPGFLEGLRELTEEHGALLIFDEVI 243 (432)
T ss_pred CCCChhhhccEEEecCC-----CHHHHHHHHHHcCCcEEEEEeccccCCCCCCCCCHHHHHHHHHHHHHcCcEEEEecch
Confidence 11 35566775 999999999987789999998753 45788753 3899999999999999999875
Q ss_pred c---ccccCCCCCCccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCC-ccccCCCCCCCCCCCCCCCCCCc
Q 001989 770 M---NAQVGLTSPGYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSH-PVVSTGGIPAPEKSQPLGTIAAA 845 (985)
Q Consensus 770 ~---~~~~~l~~pg~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~-~~g~~~~~~~~~~~~~~~~i~s~ 845 (985)
. .+.+|...--..-+|+.+++ |.+ | ||--+|.+..++++++.+.+. .+. ..++
T Consensus 244 TGFR~~~gGaq~~~gi~PDlttlG--KiI----G-GGlP~ga~gGr~eiM~~~~p~g~vy----------------qaGT 300 (432)
T COG0001 244 TGFRVALGGAQGYYGVEPDLTTLG--KII----G-GGLPIGAFGGRAEIMEQLAPLGPVY----------------QAGT 300 (432)
T ss_pred hhcccCCcccccccCcCcchhhhh--hhh----c-CCcceeeeccHHHHHhhhCCCCCcc----------------ccCC
Confidence 2 11122111111236887543 555 4 455688888898888765321 111 1123
Q ss_pred chhhhHHHHHHHHHHHHhcH-HHHHHHHHHHHHHHHHHHHHhhc-----cCCeeecCCCCceeeEEEEEecCc-----cc
Q 001989 846 PWGSALILPISYTYIAMMGS-KGLTEASKIAILNANYMAKRLEK-----HYPILFRGVNGTVAHEFIVDLRGL-----KN 914 (985)
Q Consensus 846 ~~g~~~~~~~a~a~l~~lg~-eGl~~~~~~~~~~a~~l~~~L~~-----g~~l~~~~~~~~~~~~~iv~~~~~-----~~ 914 (985)
+.|+++.+++..+.+..+.. ++ ..++..+.++.|++.|++ ++.+..... +..+ .+-|... .+
T Consensus 301 ~sgnplamaAG~atl~~l~~~~~---~y~~l~~~~~~L~~gl~~~~~~~g~~~~v~~~-gsm~---~i~F~~~~~~n~~d 373 (432)
T COG0001 301 LSGNPLAMAAGLATLEELMTEEG---VYERLDALGERLAEGLRAAAERHGIPLTVNRV-GSMF---GIFFTEEGVRNYAD 373 (432)
T ss_pred CCCcHHHHHHHHHHHHHHHhccc---HHHHHHHHHHHHHHHHHHHHHHhCCCeEEeee-cceE---EEEecCCCCCCHHH
Confidence 45677777777888887765 34 233455666677776654 444433221 2222 2222210 00
Q ss_pred --cCCC-CHHHHHHHHHHCCCccCCCCCCCCCEEEEeccCCCCHHHHHHHHccCChhHHHHhhcc
Q 001989 915 --TAGI-EPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRLKM 976 (985)
Q Consensus 915 --~~g~-~~~~v~~~L~~~Gi~~~~~~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~~~ 976 (985)
..+. ....+.+.|.++|+++....+ +..- ++.-+|++|||+ +++++++++.++..
T Consensus 374 a~~sd~~~~~~~~~~~l~~GV~l~ps~~---ea~f--lS~ahte~di~~--~~~a~~~~~~~~~~ 431 (432)
T COG0001 374 AKRSDVERFAKFFHHLLNRGVYLAPSQF---EAGF--LSTAHTEEDIDR--TLEAADEAFKELAG 431 (432)
T ss_pred HHhhchHHHHHHHHHHHhCCcccCCccc---ccee--eecccCHHHHHH--HHHHHHHHHHHhhc
Confidence 0001 123455678889999865432 1222 344689999999 77888888877654
|
|
| >cd00378 SHMT Serine-glycine hydroxymethyltransferase (SHMT) | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.7e-14 Score=166.15 Aligned_cols=277 Identities=15% Similarity=0.127 Sum_probs=174.6
Q ss_pred HHHHH-HHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHH-hhcCCCeEEEEe--
Q 001989 211 ESLLN-FQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICIT-RADGFDIKVVVS-- 286 (985)
Q Consensus 211 ~~i~e-~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~-~a~~~gi~v~~v-- 286 (985)
+.+.+ .++.+++++|.+.+++.. .+||.++.+++.++ . ++||+|+++...|+++...+.. .++..|.+++.+
T Consensus 64 ~~l~~~~~~~~~~~~g~~~~~v~~-~sgt~a~~~~l~~l-~--~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 139 (402)
T cd00378 64 DEIEDLAIERAKKLFGAEYANVQP-HSGSQANLAVYFAL-L--EPGDTIMGLDLSHGGHLTHGSFTKVSASGKLFESVPY 139 (402)
T ss_pred HHHHHHHHHHHHHHhCCCceeeec-CCcHHHHHHHHHHh-c--CCCCEEEEecCccCccccccccccccccceeEEEecC
Confidence 44444 456788999998755533 45677777666555 2 3899999999999876554321 123356554443
Q ss_pred ---------Cchhhhc-c-CCCEeEEEEEcCCCCeeeccHHHHHHHHHhCCcEEEEEecCccccCC-----CCCCcccce
Q 001989 287 ---------DLKDIDY-K-SGDVCGVLVQYPGTEGEVLDYGDFIKNAHANGVKVVMATDLLALTIL-----KPPGELGAD 350 (985)
Q Consensus 287 ---------~~~~l~~-l-~~~t~~V~v~~pn~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l-----~~~~~~GaD 350 (985)
|++++++ + .+++++|++.+|+ +|...|+++|+++||++|+++++|. .++.|.. ..+.. ++|
T Consensus 140 ~~~~~~~~id~~~l~~~i~~~~~~~v~~~~~~-~~~~~~~~~I~~l~~~~~~~li~D~-a~~~g~~~~g~~~~~~~-~~d 216 (402)
T cd00378 140 GVDPETGLIDYDALEKMALEFKPKLIVAGASA-YPRPIDFKRFREIADEVGAYLLVDM-AHVAGLVAGGVFPNPLP-GAD 216 (402)
T ss_pred CcCcccCCcCHHHHHHHHHhCCCCEEEecCcc-cCCCcCHHHHHHHHHhcCCEEEEEc-cchhhhhhcccCCCccc-CCc
Confidence 2344555 5 4578888877764 4778899999999999999999942 3233321 22233 789
Q ss_pred EEEecC-ccccccCCCCCCcEEEEEEch-hhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHH
Q 001989 351 IVVGSA-QRFGVPMGYGGPHAAFLATSQ-EYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLA 428 (985)
Q Consensus 351 i~v~s~-k~lg~P~~~GGP~~G~l~~~~-~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a 428 (985)
++++|+ |+|+ ||.+|++.+++ ++.+.+.... .. + ..++++. ....+
T Consensus 217 v~~~s~sK~l~------G~~gg~i~~~~~~~~~~l~~~~---------~~-~-------------~~~~~~~---~~~~a 264 (402)
T cd00378 217 VVTTTTHKTLR------GPRGGLILTRKGELAKKINSAV---------FP-G-------------LQGGPHL---HVIAA 264 (402)
T ss_pred EEEeccccCCC------CCCceEEEeccHHHHHHHHHHh---------Cc-c-------------ccCCchH---HHHHH
Confidence 999998 7663 34456666665 6665541000 00 0 0011111 22222
Q ss_pred HHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCC-CcceEEEecC--C--HHHHHHHHHHcCceeeee-
Q 001989 429 NMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLP-FFDTVKVKCA--D--AHAIASAAYKIEMNLRVV- 502 (985)
Q Consensus 429 ~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~-~~~~~~~~~~--~--~~~v~~~L~~~GI~~~~~- 502 (985)
+..++ ......++++..++..++++++++.|++.| ++++..+ ....+.+.++ + ..++.+.|.++||.+...
T Consensus 265 ~~~al--~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~~~~~v~v~~~~~~~~~~~~~~~l~~~gI~v~~~~ 341 (402)
T cd00378 265 KAVAL--KEALEPEFKAYAKQVVENAKALAEALKERG-FKVVSGGTDNHLVLVDLRPKGITGKAAEDALEEAGITVNKNT 341 (402)
T ss_pred HHHHH--HHHhhHHHHHHHHHHHHHHHHHHHHHHhCC-CeEeecCCCCeEEEEeCCccCCCHHHHHHHHHHcCcEEcCCc
Confidence 22222 222223567888889999999999999987 8876322 2223445554 2 567777788889987521
Q ss_pred ---------cCCeEEEEeccCC----CHHHHHHHHHHHhC
Q 001989 503 ---------DSNTVTASFDETT----TLEDVDKLFIVFAG 529 (985)
Q Consensus 503 ---------~~~~lris~t~~~----t~edId~li~aL~~ 529 (985)
.+..+|++++..+ +.+||+.+++.|..
T Consensus 342 ~p~~~~~~~~~~~lRi~~~~~~~~~~~~~di~~~~~~l~~ 381 (402)
T cd00378 342 LPWDPSSPFVPSGIRIGTPAMTTRGMGEEEMEEIADFIAR 381 (402)
T ss_pred CCCCCCCCCCCCeeEecCHHHHHhCCCHHHHHHHHHHHHH
Confidence 2357999998865 79999999999975
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). SHMT carries out interconversion of serine and glycine; it catalyzes the transfer of hydroxymethyl group of N5, N10-methylene tetrahydrofolate to glycine resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers; the mammalian enzyme forms a homotetramer comprising four pyridoxal phosphate-bound active sites. |
| >PRK06176 cystathionine gamma-synthase/cystathionine beta-lyase; Validated | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.9e-14 Score=165.31 Aligned_cols=212 Identities=17% Similarity=0.161 Sum_probs=152.4
Q ss_pred HHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc---h
Q 001989 213 LLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL---K 289 (985)
Q Consensus 213 i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~---~ 289 (985)
..++++.+|++.|.+. +.++.+|++++.+++.. . ++||+||+++..|+.....+...++..|++++++|. +
T Consensus 52 ~~~Le~~la~l~g~~~--al~~~SG~~Al~~~l~~--l--~pGd~Vi~~~~~y~~t~~~~~~~~~~~gi~v~~vd~~d~e 125 (380)
T PRK06176 52 RFALEELIADLEGGVK--GFAFASGLAGIHAVFSL--F--QSGDHVLLGDDVYGGTFRLFDKVLVKNGLSCTIIDTSDLS 125 (380)
T ss_pred HHHHHHHHHHHhCCCC--EEEECCHHHHHHHHHHH--c--CCCCEEEEcCCChhHHHHHHHHHHHhcCeEEEEcCCCCHH
Confidence 3457799999999876 56778888887754432 2 389999999999999888887777788999998875 4
Q ss_pred hhhc-cCCCEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCCCCCcccceEEEecC-ccccccCCCC
Q 001989 290 DIDY-KSGDVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKPPGELGADIVVGSA-QRFGVPMGYG 366 (985)
Q Consensus 290 ~l~~-l~~~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~~~~~~GaDi~v~s~-k~lg~P~~~G 366 (985)
++++ ++++|++|++++| |++|.+.|+++|+++||++|++++|| +.++.+....|.++|+|++++|+ |.+++|-.
T Consensus 126 ~l~~ai~~~t~lV~lesP~Nptg~~~di~~I~~la~~~gi~vivD-~t~a~~~~~~p~~~gaDivv~S~tK~l~g~~d-- 202 (380)
T PRK06176 126 QIKKAIKPNTKALYLETPSNPLLKITDLAQCASVAKDHGLLTIVD-NTFATPYYQNPLLLGADIVVHSGTKYLGGHSD-- 202 (380)
T ss_pred HHHHhcCcCceEEEEECCCCCCceecCHHHHHHHHHHcCCEEEEE-CCccccccCCccccCCCEEEecCceeccCCcc--
Confidence 5666 7889999999998 78999999999999999999999995 45555555567789999999998 77764421
Q ss_pred CCcEEEEEEch-hhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcchHHH
Q 001989 367 GPHAAFLATSQ-EYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKT 445 (985)
Q Consensus 367 GP~~G~l~~~~-~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~ 445 (985)
.-.|++.+++ ++.+++. ..++..|. .. ++. ..|+...|.+.+..
T Consensus 203 -~~gG~vv~~~~~~~~~~~-------------------------~~~~~~G~--~~--~~~-----~~~l~~~gl~tl~~ 247 (380)
T PRK06176 203 -VVAGLVTTNNEALAQEIA-------------------------FFQNAIGG--VL--GPQ-----DSWLLQRGIKTLGL 247 (380)
T ss_pred -ceeeEEEecHHHHHHHHH-------------------------HHHHHhcC--CC--CHH-----HHHHHHhccCcHHH
Confidence 1246777654 3333220 00011010 00 111 12344556667778
Q ss_pred HHHHHHHHHHHHHHHHhcCCCeE
Q 001989 446 IAQRVHGLAGTFALGLKKLGTVE 468 (985)
Q Consensus 446 i~~~~~~~a~~l~~~L~~~g~~~ 468 (985)
+.++..+++..+.+.|++...+.
T Consensus 248 R~~~~~~~a~~la~~L~~~p~v~ 270 (380)
T PRK06176 248 RMEAHQKNALCVAEFLEKHPKVE 270 (380)
T ss_pred HHHHHHHHHHHHHHHHHhCCCee
Confidence 88888899999999999874353
|
|
| >PRK04870 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.4e-14 Score=165.75 Aligned_cols=281 Identities=13% Similarity=0.105 Sum_probs=181.1
Q ss_pred HHHHHHHHHHhCCCcc-ceecCcHHH-HHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcCCCC
Q 001989 635 NNLGEWLCTITGFDSF-SLQPNAGAA-GEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAK 712 (985)
Q Consensus 635 ~e~~~~la~l~G~~~~-~~~~~sGa~-a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~d~~ 712 (985)
.++++.+++++|.+.. .+..++|++ +.. ++++.+. .++++|+++++.|..+...++..|++++.+|.+++
T Consensus 66 ~~lr~~ia~~~~~~~~~~I~~t~G~~~~i~---~~~~~~~-----~~gd~vlv~~P~y~~~~~~~~~~g~~~~~i~~~~~ 137 (356)
T PRK04870 66 AALKAALRAAMGVPAGADVLLGNGSDELIQ---LLALACA-----KPGATVLAPEPGFVMYRMSAKLAGLEFVGVPLTAD 137 (356)
T ss_pred HHHHHHHHHHhCcCCCCcEEEcCCHHHHHH---HHHHHhc-----CCCCEEEECCCCHHHHHHHHHHcCCEEEEecCCCC
Confidence 4678889999998653 555556655 332 2222221 46889999988776666667899999999999877
Q ss_pred CCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccC--C-CCCCccCCcEEE
Q 001989 713 GNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVG--L-TSPGYIGADVCH 788 (985)
Q Consensus 713 g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~--l-~~pg~~g~Di~~ 788 (985)
+.+|+++|++++.. .++++|++++| |++|.+. +.+++.++++..++++++|+++.. +.. + .......--+++
T Consensus 138 ~~~d~~~l~~~~~~--~~~~~v~l~~p~NPtG~~~-~~~~~~~i~~~~~~~ii~De~y~~-~~~~~~~~~~~~~~~vi~~ 213 (356)
T PRK04870 138 FTLDLPAMLAAIAE--HRPALVFLAYPNNPTGNLF-DDADVERIIEAAPGLVVVDEAYQP-FAGDSWLPRLARFPNLLVM 213 (356)
T ss_pred CCCCHHHHHHHhhc--CCCCEEEEcCCCCCCCCCC-CHHHHHHHHHHCCCEEEEECCchh-hcCcchHHHHhhCCCEEEE
Confidence 89999999999862 47889999998 5799998 788888888777899999998731 111 1 011122223667
Q ss_pred eCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHHH
Q 001989 789 LNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGL 868 (985)
Q Consensus 789 ~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl 868 (985)
.|++| ++. .|.++|++++++++.+.+.... ...+++ ..++ .++...+.. .+.+
T Consensus 214 ~S~SK-~~~----~GlRiG~~i~~~~~i~~~~~~~--------------~~~~~~--~~~q----~~a~~~l~~--~~~~ 266 (356)
T PRK04870 214 RTVSK-LGL----AGLRLGYLAGHPAWIAELDKVR--------------PPYNVN--VLTQ----ATALFALEH--VDVL 266 (356)
T ss_pred ecchh-hhh----HHHhhhhhhCCHHHHHHHHHcc--------------CCCcCC--HHHH----HHHHHHHhC--HHHH
Confidence 78888 644 3678999998876654432110 001111 1111 112222221 2335
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCC-CC-C-CCCEE
Q 001989 869 TEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTM-SW-P-VPGTL 945 (985)
Q Consensus 869 ~~~~~~~~~~a~~l~~~L~~g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~-~~-p-~~~~l 945 (985)
++..++..++++++.+.|++..++.+.++ +..+ +.+.++ +..++.+.|.++||.+... .+ + .++++
T Consensus 267 ~~~~~~~~~~~~~l~~~L~~~~~~~~~~~-~~~~--~~~~~~--------~~~~~~~~l~~~gI~v~~~~~f~~~~~~~i 335 (356)
T PRK04870 267 DAQAAQLRAERTRLAAALAALPGVTVFPS-AANF--ILVRVP--------DAAAVFDGLKTRGVLVKNLSGMHPLLANCL 335 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCcEECCC-CCeE--EEEECC--------CHHHHHHHHHHCCEEEEECCCCCCCCCCeE
Confidence 55566677788888888876223322222 2222 334432 4678899999999987542 22 1 35799
Q ss_pred EEeccCCCCHHHHHHHHccCChhHH
Q 001989 946 MIEPTESESKSWTGIVMLSSPSEKK 970 (985)
Q Consensus 946 ris~t~~~t~eeId~~~~~~~l~~~ 970 (985)
||++. +.+|+++ |+++|+++
T Consensus 336 Ris~~---~~~~~~~--l~~al~~~ 355 (356)
T PRK04870 336 RVTVG---TPEENAQ--FLAALKAA 355 (356)
T ss_pred EEeCC---CHHHHHH--HHHHHHHh
Confidence 99984 8999999 76777654
|
|
| >PRK07504 O-succinylhomoserine sulfhydrylase; Reviewed | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.1e-14 Score=166.15 Aligned_cols=208 Identities=15% Similarity=0.198 Sum_probs=145.2
Q ss_pred HHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHH----HHHCCcEEEEEcC
Q 001989 634 FNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPAT----AAMCGMKIVSVGT 709 (985)
Q Consensus 634 ~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~----a~~~G~~vv~v~~ 709 (985)
..++++.+++++|.+.+.+ +++|+.++.+++++.. +++|+||+++..|+.+... +...|++++.++.
T Consensus 67 ~~~Le~~lA~l~G~~~~~~-~~sG~~Ai~~~l~~~l--------~~Gd~Vl~~~~~y~~~~~~~~~~~~~~G~~v~~vd~ 137 (398)
T PRK07504 67 VDMFEKRMCALEGAEDARA-TASGMAAVTAAILCQV--------KAGDHVVAARALFGSCRYVVETLLPRYGIESTLVDG 137 (398)
T ss_pred HHHHHHHHHHHhCCCeeeE-ecCHHHHHHHHHHHHh--------CCCCEEEEcCCchhHHHHHHHHHHhhcCeEEEEECC
Confidence 4578899999999987654 5577776644443221 4789999988767654333 3457999988863
Q ss_pred CCCCCCCHHHHHHHHHhcCCCEEEEEEEcCC-CccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCccCCcEEE
Q 001989 710 DAKGNINIEELRKAAEANRDNLSTLMVTYPS-THGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIGADVCH 788 (985)
Q Consensus 710 d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~pn-~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~g~Di~~ 788 (985)
+|+++++++++ ++|++|++++|+ ++|.+. |+++|+++|+++|++++||+++..+ .+..|..+|+|+++
T Consensus 138 -----~d~e~l~~ai~---~~tklV~lesp~NptG~v~-dl~~I~~la~~~gi~lvvD~a~a~~--~~~~~~~~gaDivv 206 (398)
T PRK07504 138 -----LDLDNWEKAVR---PNTKVFFLESPTNPTLEVI-DIAAVAKIANQAGAKLVVDNVFATP--LFQKPLELGAHIVV 206 (398)
T ss_pred -----CCHHHHHHhcC---cCceEEEEECCCCCCcEec-CHHHHHHHHHHcCCEEEEECCcccc--ccCCchhhCCCEEE
Confidence 69999999997 899999999995 699998 8999999999999999999998533 23456678999999
Q ss_pred eCCcccccccCCCCCCce-EEEEEcccccC-cCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHH
Q 001989 789 LNLHKTFCIPHGGGGPGM-GPIGVKKHLAP-FLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSK 866 (985)
Q Consensus 789 ~s~hK~l~~p~g~GGPg~-G~i~~~~~l~~-~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~e 866 (985)
.|+||+|+. .|.++ |+++.+++... .+.... + ..+...+ + ..||..+. +.+
T Consensus 207 ~S~sK~l~g----~g~~~GG~vv~~~~~i~~~~~~~~-----------~--~~g~~~s-----~---~~A~~~l~--~L~ 259 (398)
T PRK07504 207 YSATKHIDG----QGRCLGGVVLSDKAWIEEHLQDYF-----------R--HTGPSLS-----P---FNAWTLLK--GLE 259 (398)
T ss_pred eeccccccC----CccceEEEEEeCcHHHHHHHHHHH-----------H--HhCCCCC-----H---HHHHHHHh--ccc
Confidence 999999953 23434 57776655432 111000 0 0111111 1 12333333 334
Q ss_pred HHHHHHHHHHHHHHHHHHHhhc
Q 001989 867 GLTEASKIAILNANYMAKRLEK 888 (985)
Q Consensus 867 Gl~~~~~~~~~~a~~l~~~L~~ 888 (985)
.+..+.++..+++..+.+.|++
T Consensus 260 tl~~R~~~~~~na~~la~~L~~ 281 (398)
T PRK07504 260 TLPVRVRQQTESAAAIADFLAG 281 (398)
T ss_pred hHHHHHHHHHHHHHHHHHHHHc
Confidence 5667777888999999999986
|
|
| >PRK10534 L-threonine aldolase; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.6e-15 Score=170.16 Aligned_cols=283 Identities=12% Similarity=0.121 Sum_probs=169.4
Q ss_pred HHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcc-cHHH-HHHC-CcEEEEEcCC
Q 001989 634 FNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGT-NPAT-AAMC-GMKIVSVGTD 710 (985)
Q Consensus 634 ~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~-~~~~-a~~~-G~~vv~v~~d 710 (985)
..++++.+++++|.+... ..++|++++...+.+.. .++++|+++.+.|.. +... +... +++++.++++
T Consensus 36 ~~~L~~~la~~~g~~~~~-v~~~g~~a~~~~l~~~~--------~~gd~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (333)
T PRK10534 36 VNALQDYAAELSGKEAAL-FLPTGTQANLVALLSHC--------ERGEEYIVGQAAHNYLYEAGGAAVLGSIQPQPIDAA 106 (333)
T ss_pred HHHHHHHHHHHhCCCeEE-EeCchHHHHHHHHHHhc--------CCCCeeEEechhhhhHhcCCchHHhcCceEEeecCC
Confidence 457889999999998764 44556666644444321 367888887766642 2111 2333 4788888887
Q ss_pred CCCCCCHHHHHHHHHhcC---CCEEEEEEEcCCCccccc--cCHHHHHHHHHHcCCEEEEEcccccccc-CCCCC-C--c
Q 001989 711 AKGNINIEELRKAAEANR---DNLSTLMVTYPSTHGVYE--EGIDEICKIIHDNGGQVYMDGANMNAQV-GLTSP-G--Y 781 (985)
Q Consensus 711 ~~g~iD~e~L~~~i~~~~---~~t~~Vvv~~pn~~G~i~--~di~eI~~la~~~galliVD~a~~~~~~-~l~~p-g--~ 781 (985)
.++.+|+++|+++++... .++++|++++|++ |.+. .++++|.++|+++|+++++|+|+..... ..... . .
T Consensus 107 ~~~~~d~~~l~~~i~~~~~~~~~~~lv~l~np~~-G~v~~~~~l~~i~~~~~~~~~~lvvDEA~~~~~~~~~~~~~~~~~ 185 (333)
T PRK10534 107 ADGTLPLDKVAAKIKPDDIHFARTRLLSLENTHN-GKVLPREYLKQAWEFTRERNLALHVDGARIFNAVVAYGCELKEIT 185 (333)
T ss_pred CCCCCCHHHHHHhhcccCcCcccceEEEEecCCC-CeecCHHHHHHHHHHHHHcCCeEEeeHHHHHHHHHHcCCCHHHHH
Confidence 789999999999996210 1688999999874 8876 1345566788999999999998642110 00111 0 1
Q ss_pred cCCcEEEeCCcccccccCCCCCCceE-EEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHH
Q 001989 782 IGADVCHLNLHKTFCIPHGGGGPGMG-PIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYI 860 (985)
Q Consensus 782 ~g~Di~~~s~hK~l~~p~g~GGPg~G-~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l 860 (985)
...|.++.+++|.|+++ +| +++.++++...+.... .....++.. .+...+++.+.+
T Consensus 186 ~~~~~~~~s~SK~~~~~-------~G~~~~~~~~~i~~~~~~~------------~~~~~~~~~----~~~~~a~~~~~l 242 (333)
T PRK10534 186 QYCDSFTICLSKGLGTP-------VGSLLVGNRDYIKRARRWR------------KMTGGGMRQ----AGILAAAGLYAL 242 (333)
T ss_pred hcCCEEEEEeEcCCCCc-------ccceEEcCHHHHHHHHHHH------------HHhCCchhh----HHHHHHHHHHHH
Confidence 13476666788987543 34 5666776655442110 000001110 111112222222
Q ss_pred HHhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCCC
Q 001989 861 AMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSW 939 (985)
Q Consensus 861 ~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~~ 939 (985)
.. ..+..++..++++++.++|++ ++++. .+ .. +-+.++++ +.+..++.+.|.++||.+...
T Consensus 243 ~~-----~~~~~~~~~~~r~~l~~~L~~~g~~~~--~~-~~--nfv~~~~~------~~~~~~~~~~l~~~gi~v~~~-- 304 (333)
T PRK10534 243 KH-----NVARLQEDHDNAAWLAEQLREAGADVM--RQ-DT--NMLFVRVG------EEQAAALGEYMRERNVLINAS-- 304 (333)
T ss_pred Hh-----hHHHHHHHHHHHHHHHHHHHhCCCccC--CC-Cc--eEEEEECC------chhHHHHHHHHHHcCeeecCC--
Confidence 21 123333455567899999987 55542 22 12 22334543 124678889999999998532
Q ss_pred CCCCEEEEeccCCCCHHHHHHHHccCChhHHHH
Q 001989 940 PVPGTLMIEPTESESKSWTGIVMLSSPSEKKLH 972 (985)
Q Consensus 940 p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~ 972 (985)
..+|++.+..+|+||+++ +++.|++.+.
T Consensus 305 ---~~~rl~~~~r~t~e~~~~--~~~~l~~~~~ 332 (333)
T PRK10534 305 ---PIVRLVTHLDVSREQLAE--VVAHWRAFLA 332 (333)
T ss_pred ---ceEEEEEEeCCCHHHHHH--HHHHHHHHhc
Confidence 257888876789999999 7777775543
|
|
| >PRK07337 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.65 E-value=2e-14 Score=166.56 Aligned_cols=302 Identities=13% Similarity=0.120 Sum_probs=179.4
Q ss_pred hhHHHHHHHHHHHHHHHhCC--Cccceec-CcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEE
Q 001989 628 QGYQEMFNNLGEWLCTITGF--DSFSLQP-NAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKI 704 (985)
Q Consensus 628 ~G~~~~~~e~~~~la~l~G~--~~~~~~~-~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~v 704 (985)
+|..++.+.+.+++.+..|. +...+.. +++++|... ++..+. .++|+|+++++.|+.+...++..|.++
T Consensus 67 ~g~~~lr~~ia~~~~~~~~~~~~~~~i~~t~G~~~al~~---~~~~l~-----~~gd~Vlv~~p~y~~~~~~~~~~g~~~ 138 (388)
T PRK07337 67 LGLAPLREAIAAWYARRFGLDVAPERIVVTAGASAALLL---ACLALV-----ERGDEVLMPDPSYPCNRHFVAAAEGRP 138 (388)
T ss_pred CCCHHHHHHHHHHHHHHhCCCCChHhEEEecCcHHHHHH---HHHHhc-----CCCCEEEEeCCCchhhHHHHHHcCCEE
Confidence 56656665666666655565 3344444 344444432 222221 468899999998888777778889999
Q ss_pred EEEcCCC--CCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccc--cCHHHHHHHHHHcCCEEEEEccccc-cccC-CC
Q 001989 705 VSVGTDA--KGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYE--EGIDEICKIIHDNGGQVYMDGANMN-AQVG-LT 777 (985)
Q Consensus 705 v~v~~d~--~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~--~di~eI~~la~~~galliVD~a~~~-~~~~-l~ 777 (985)
+.+|.+. ++.+|+++++++++ +++++|++++| |++|.+. .++++|+++|+++|+++++|.++.. .... ..
T Consensus 139 ~~~~~~~~~~~~~~~~~l~~~~~---~~~~~v~l~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~ 215 (388)
T PRK07337 139 VLVPSGPAERFQLTAADVEAAWG---ERTRGVLLASPSNPTGTSIAPDELRRIVEAVRARGGFTIVDEIYQGLSYDAAPV 215 (388)
T ss_pred EEeecCCccCCcCCHHHHHhhcC---ccceEEEEECCCCCCCcCcCHHHHHHHHHHHHHCCCEEEEeccccccccCCCCc
Confidence 9999864 36899999999997 78999999999 5799875 2588999999999999999988631 1111 01
Q ss_pred CCCccCCcE-EEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHH
Q 001989 778 SPGYIGADV-CHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPIS 856 (985)
Q Consensus 778 ~pg~~g~Di-~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a 856 (985)
....++.++ ++.|++|.|+.| |.++|++++++++.+.+.... .....+.+ ..++. ++
T Consensus 216 ~~~~~~~~vi~~~S~SK~~~~~----G~RiG~~~~~~~l~~~l~~~~------------~~~~~~~s--~~~q~----~~ 273 (388)
T PRK07337 216 SALSLGDDVITINSFSKYFNMT----GWRLGWLVVPEALVGTFEKLA------------QNLFICAS--ALAQH----AA 273 (388)
T ss_pred ChhhccCCEEEEEechhhcCCc----hhheeeeecCHHHHHHHHHHH------------HHhccCCC--hHHHH----HH
Confidence 112234455 466889988544 678999998876654432110 00000111 11111 11
Q ss_pred HHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHH-HHCCCcc
Q 001989 857 YTYIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRL-MDYGFHG 934 (985)
Q Consensus 857 ~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L-~~~Gi~~ 934 (985)
..++..-..+.+++..+...++++++.+.|++ +..+.. .+.+..+ +.++++........+..+++++| .++||.+
T Consensus 274 ~~~l~~~~~~~~~~~~~~~~~~r~~~~~~L~~~~~~~~~-~p~~g~f--~~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v 350 (388)
T PRK07337 274 LACFEPDTLAIYERRRAEFKRRRDFIVPALESLGFKVPV-MPDGAFY--VYADCRGVAHPAAGDSAALTQAMLHDAGVVL 350 (388)
T ss_pred HHHhccCchHHHHHHHHHHHHHHHHHHHHHHhcCCcccc-CCCeeEE--EEEecccccCCCCCCHHHHHHHHHHhCCEEE
Confidence 12221111123444455566778888888876 333211 1222222 34555421100124677888775 5679987
Q ss_pred CCC-CCC---CCCEEEEeccCCCCHHHHHHHHccCChhH
Q 001989 935 PTM-SWP---VPGTLMIEPTESESKSWTGIVMLSSPSEK 969 (985)
Q Consensus 935 ~~~-~~p---~~~~lris~t~~~t~eeId~~~~~~~l~~ 969 (985)
... .|. ..+++||++.. +.++++. .++.|.+
T Consensus 351 ~pg~~f~~~~~~~~~Ri~~~~--~~~~l~~--~l~rl~~ 385 (388)
T PRK07337 351 VPGRDFGPHAPRDYIRLSYAT--SMSRLEE--AVARLGK 385 (388)
T ss_pred eCchhhCCCCCCCEEEEEecC--CHHHHHH--HHHHHHH
Confidence 431 121 24799999975 5677766 4444443
|
|
| >TIGR01328 met_gam_lyase methionine gamma-lyase | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.8e-14 Score=164.71 Aligned_cols=211 Identities=20% Similarity=0.199 Sum_probs=148.2
Q ss_pred HHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHH----HHHHCCcEEEEEcC
Q 001989 634 FNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPA----TAAMCGMKIVSVGT 709 (985)
Q Consensus 634 ~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~----~a~~~G~~vv~v~~ 709 (985)
..++++.+++++|.+.+ +.+++|+.|+..++.++. .++++||++...|+.... .+...|++++.++.
T Consensus 61 ~~~le~~lA~l~g~~~a-v~~~sG~~Ai~~~l~al~--------~~Gd~Vi~~~~~y~~t~~~~~~~~~~~G~~~~~vd~ 131 (391)
T TIGR01328 61 VSNLEGRIAFLEGTEAA-VATSSGMGAIAATLLTIL--------KAGDHLISDECLYGCTFALLEHALTKFGIQVDFINM 131 (391)
T ss_pred HHHHHHHHHHHhCCCcE-EEECCHHHHHHHHHHHHh--------CCCCEEEEecCcchHHHHHHHHHHhcCCeEEEEECC
Confidence 45789999999998874 566778877654443331 367899998877764332 24568999999987
Q ss_pred CCCCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCccCCcEEE
Q 001989 710 DAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIGADVCH 788 (985)
Q Consensus 710 d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~g~Di~~ 788 (985)
+ |+++++++++ ++|++|++++| |++|.+. |+++|+++||++|+++++|+++..+ .+..|...++|+++
T Consensus 132 ~-----d~e~l~~~i~---~~tklV~le~p~Np~G~v~-dl~~I~~la~~~gi~livD~a~a~~--~~~~~~~~g~Divv 200 (391)
T TIGR01328 132 A-----IPEEVKAHIK---DNTKIVYFETPANPTMKLI-DMERVCRDAHSQGVKVIVDNTFATP--MLTNPVALGVDVVV 200 (391)
T ss_pred C-----CHHHHHHhhc---cCCeEEEEECCCCCCCccc-CHHHHHHHHHHcCCEEEEECCCchh--ccCCchhcCCCEEE
Confidence 4 8999999997 78999999999 4689987 8999999999999999999998532 23456677999999
Q ss_pred eCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHHH
Q 001989 789 LNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGL 868 (985)
Q Consensus 789 ~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl 868 (985)
.|++|+|+.+ |++.+|+++.++++...+... +. + ...+...+ + ..+|..+. +.+.+
T Consensus 201 ~S~sK~lgg~---g~~~gG~v~~~~~li~~l~~~--~~--------~-~~~g~~l~-----~---~~a~l~l~--~L~tl 256 (391)
T TIGR01328 201 HSATKYIGGH---GDVVAGLICGKAELLQQIRMV--GI--------K-DMTGSVIS-----P---FDAWLILR--GLKTL 256 (391)
T ss_pred ccccccccCC---CCceEEEEEcCHHHHHHHHHH--HH--------H-hCCCCCCC-----c---HHHHHHHh--CcCcH
Confidence 9999998532 233478888877665443210 00 0 00111111 1 11233333 33445
Q ss_pred HHHHHHHHHHHHHHHHHhhc
Q 001989 869 TEASKIAILNANYMAKRLEK 888 (985)
Q Consensus 869 ~~~~~~~~~~a~~l~~~L~~ 888 (985)
..+.++..+++.++.+.|++
T Consensus 257 ~~r~~~~~~na~~la~~L~~ 276 (391)
T TIGR01328 257 NIRMKRHSENAMKVAEYLKS 276 (391)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 66677888999999999986
|
This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine. |
| >PLN02509 cystathionine beta-lyase | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.8e-14 Score=168.15 Aligned_cols=212 Identities=18% Similarity=0.183 Sum_probs=151.3
Q ss_pred HHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc---h
Q 001989 213 LLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL---K 289 (985)
Q Consensus 213 i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~---~ 289 (985)
..++++.+|++.|.+. +.++.+|++++.++. ++ . ++||+||+++..|+.+...++......|+++++++. +
T Consensus 135 ~~aLE~~lA~leg~e~--ai~~~SG~aAi~~il-~l-l--~~GD~VI~~~~~y~~t~~ll~~~l~~~G~~v~~vd~~d~e 208 (464)
T PLN02509 135 RDALESLLAKLDKADR--AFCFTSGMAALSAVT-HL-I--KNGEEIVAGDDVYGGSDRLLSQVVPRSGVVVKRVNTTNLD 208 (464)
T ss_pred HHHHHHHHHHHhCCCE--EEEeCcHHHHHHHHH-HH-h--CCCCEEEEcCCchhhHHHHHHHHHHHCCeEEEEeCCCCHH
Confidence 4567789999998765 566778887664433 32 2 389999999999999887776655678999998865 4
Q ss_pred hhhc-cCCCEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCCCCCcccceEEEecC-ccccccCCCC
Q 001989 290 DIDY-KSGDVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKPPGELGADIVVGSA-QRFGVPMGYG 366 (985)
Q Consensus 290 ~l~~-l~~~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~~~~~~GaDi~v~s~-k~lg~P~~~G 366 (985)
++++ ++++|++|++.+| |++|.+.|+++|+++||++|++++|| +.++.+.+..|.++|+|++++|+ |++++| |
T Consensus 209 ~l~~ai~~~TklV~lesPsNPtG~i~Dl~~I~~lAk~~g~~lIVD-~A~a~~~~~~pl~~gaDivv~S~tK~l~G~---g 284 (464)
T PLN02509 209 EVAAAIGPQTKLVWLESPTNPRQQISDIRKIAEMAHAQGALVLVD-NSIMSPVLSRPLELGADIVMHSATKFIAGH---S 284 (464)
T ss_pred HHHHhCCcCCeEEEEECCCCCCCCHHHHHHHHHHHHHcCCEEEEE-CCccccccCChhhcCCcEEEecCcccccCC---C
Confidence 5666 7889999999998 78999999999999999999999994 45666666677789999999998 877643 3
Q ss_pred CCcEEEEEEchhhH-hcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcchHHH
Q 001989 367 GPHAAFLATSQEYK-RMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKT 445 (985)
Q Consensus 367 GP~~G~l~~~~~~~-~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~ 445 (985)
+..+|+++++++.+ +.+ + ..++..++ .+....| |+...+-+-+..
T Consensus 285 dv~gG~v~~~~~~l~~~~----------------~---------~~~~~~g~-------~l~p~~A--~l~lr~L~tL~~ 330 (464)
T PLN02509 285 DVMAGVLAVKGEKLAKEV----------------Y---------FLQNSEGS-------GLAPFDC--WLCLRGIKTMAL 330 (464)
T ss_pred ccceeEEEeccHHHHHHH----------------H---------HHHHhcCC-------CcCHHHH--HHHHhhhhhHHH
Confidence 33468888765432 111 0 00011111 0111112 224444555667
Q ss_pred HHHHHHHHHHHHHHHHhcCCCeE
Q 001989 446 IAQRVHGLAGTFALGLKKLGTVE 468 (985)
Q Consensus 446 i~~~~~~~a~~l~~~L~~~g~~~ 468 (985)
+.++..+++.++.+.|++...++
T Consensus 331 R~~r~~~nA~~la~~L~~~p~V~ 353 (464)
T PLN02509 331 RIEKQQENARKIAMYLSSHPRVK 353 (464)
T ss_pred HHHHHHHHHHHHHHHHhcCCCcc
Confidence 77888999999999999875454
|
|
| >PRK15400 lysine decarboxylase CadA; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=6.6e-15 Score=176.41 Aligned_cols=274 Identities=13% Similarity=0.091 Sum_probs=190.9
Q ss_pred HHHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc--
Q 001989 211 ESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL-- 288 (985)
Q Consensus 211 ~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~-- 288 (985)
..+.|+|+.+|+++|++.+.+ +++|+|++..+++++.. ++||+||+++++|.|+...+. ..|++.+++++
T Consensus 195 G~i~eAe~~AA~~fgAd~tyf-vvNGTS~~n~av~~a~~---~~Gd~VLvdRN~HKSv~haLi----lsga~PVYl~P~r 266 (714)
T PRK15400 195 GPHKEAEEYIARVFNADRSYM-VTNGTSTANKIVGMYSA---PAGSTVLIDRNCHKSLTHLMM----MSDVTPIYFRPTR 266 (714)
T ss_pred hHHHHHHHHHHHHhCCCcEEE-EeCchHHHHHHHHHHhc---CCCCEEEeecccHHHHHHHHH----HcCCeEEEecccc
Confidence 567899999999999998765 66788888888888753 389999999999999998764 35888888743
Q ss_pred ----------------hhhhc-c--CCCEe---EEEEEcCCCCeeeccHHHHHHHHHhCCcEEEEE----ecCccccCCC
Q 001989 289 ----------------KDIDY-K--SGDVC---GVLVQYPGTEGEVLDYGDFIKNAHANGVKVVMA----TDLLALTILK 342 (985)
Q Consensus 289 ----------------~~l~~-l--~~~t~---~V~v~~pn~~G~v~di~~I~~~a~~~galliV~----a~~~~lg~l~ 342 (985)
+.+++ + .++.+ .+++|+|||+|.+.|+++|++++|.++ ++|| ++......++
T Consensus 267 n~~Gi~g~I~~~~~~~e~i~~~i~~~p~ak~p~~~vit~pTYdG~~yd~~~I~~~~~~~~--ilvDEAwgah~~F~p~~~ 344 (714)
T PRK15400 267 NAYGILGGIPQSEFQHATIAKRVKETPNATWPVHAVITNSTYDGLLYNTDFIKKTLDVKS--IHFDSAWVPYTNFSPIYE 344 (714)
T ss_pred cccCCccCCCccccCHHHHHHHHHhCccccCccEEEEECCCCccEecCHHHHHHHhCCCC--EEEEccchhhhccCcccC
Confidence 23333 3 33444 799999999999999999999999988 4673 2211112221
Q ss_pred --CCCcccc---e--EEEecC-ccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeeccccccccccc
Q 001989 343 --PPGELGA---D--IVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRD 414 (985)
Q Consensus 343 --~~~~~Ga---D--i~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre 414 (985)
.+-..|+ | +++.|. |.|++- + ++++++++.. + | +.|.+
T Consensus 345 ~~sam~~ga~~~~~i~vtQStHKtL~al-T----QaS~LHvkg~----v---------d----------------~~~~n 390 (714)
T PRK15400 345 GKCGMSGGRVEGKVIYETQSTHKLLAAF-S----QASMIHVKGD----V---------N----------------EETFN 390 (714)
T ss_pred CcChhhcCCCCCCceEEEEchhhcccch-h----HHhHHHHcCC----C---------C----------------HHHHH
Confidence 2334677 5 999999 666431 1 2344443221 1 1 00111
Q ss_pred ccCCCccchhHHHHHHHHHH--HHHhC-cchHHHHHHHHHHHHHHHHHHHhcCCC------eEEcCCC------------
Q 001989 415 KATSNICTAQALLANMAAMY--AVYHG-PEGLKTIAQRVHGLAGTFALGLKKLGT------VEVQGLP------------ 473 (985)
Q Consensus 415 ~atsni~t~~~l~a~~aa~~--l~~~g-~~Gl~~i~~~~~~~a~~l~~~L~~~g~------~~~~~~~------------ 473 (985)
.+-.-.-|+++.+.++|++- ..++. +.| +++.++..+.+..++++|.++.+ ++++.+.
T Consensus 391 ~a~~m~~STSPsY~l~ASLD~a~~~m~~~~G-~~l~~~~i~~a~~~R~~l~~~~~~~~~w~~~~~~~~~~~~~~~w~~~p 469 (714)
T PRK15400 391 EAYMMHTTTSPHYGIVASTETAAAMMKGNAG-KRLINGSIERAIKFRKEIKRLRTESDGWFFDVWQPDHIDTTECWPLRS 469 (714)
T ss_pred HHHHHHcCCCcHHHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHHHHHhCCCcccCceEEecChhhcccchhcccCc
Confidence 11122235578889999883 23333 234 66788888999999999988765 5655210
Q ss_pred ---------------Ccce--EEEecC-----------C--HHHHHHHHHHcCceeeeecCCeEEEEeccCCCHHHHHHH
Q 001989 474 ---------------FFDT--VKVKCA-----------D--AHAIASAAYKIEMNLRVVDSNTVTASFDETTTLEDVDKL 523 (985)
Q Consensus 474 ---------------~~~~--~~~~~~-----------~--~~~v~~~L~~~GI~~~~~~~~~lris~t~~~t~edId~l 523 (985)
..++ +++.++ + +..+.+.|.++||.++..+...+++.++..+|++++++|
T Consensus 470 ~~~whgf~~~~~~~~~lDP~Klti~tpgi~~~g~~~~~Gipg~~v~~~L~e~gI~~E~~d~~~iLfl~s~g~t~~~~~~L 549 (714)
T PRK15400 470 DSTWHGFKNIDNEHMYLDPIKVTLLTPGMKKDGTMSDFGIPASIVAKYLDEHGIVVEKTGPYNLLFLFSIGIDKTKALSL 549 (714)
T ss_pred cccccCcccccccccccCCceEEEEeCCCCCCccccccCCCHHHHHHHHHHcCCEEEecCCCeEEEEeCCCCCHHHHHHH
Confidence 1132 444442 2 678899999999999988888999999999999999999
Q ss_pred HHHHhC
Q 001989 524 FIVFAG 529 (985)
Q Consensus 524 i~aL~~ 529 (985)
+++|.+
T Consensus 550 ~~aL~~ 555 (714)
T PRK15400 550 LRALTD 555 (714)
T ss_pred HHHHHH
Confidence 999974
|
|
| >PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.5e-15 Score=172.27 Aligned_cols=284 Identities=18% Similarity=0.185 Sum_probs=181.5
Q ss_pred HHHHHHHHHhC------CCcc-ceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEc
Q 001989 636 NLGEWLCTITG------FDSF-SLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVG 708 (985)
Q Consensus 636 e~~~~la~l~G------~~~~-~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~ 708 (985)
++++.++++++ .+.. .+..++|+++....+..+.. ..++++|+++++.|..+...++..|++++.+|
T Consensus 48 ~lr~~ia~~~~~~~~~~~~~~~~i~~~~G~~~~~~~~~~~~~------~~~~~~vlv~~P~y~~~~~~~~~~g~~~~~~~ 121 (363)
T PF00155_consen 48 ELREAIADFLGRRYGVPVDPEANILVTSGAQAALFLLLRLLK------INPGDTVLVPDPCYPSYIEAARLLGAEVIPVP 121 (363)
T ss_dssp HHHHHHHHHHHHHHTHHTTGGEGEEEESHHHHHHHHHHHHHH------SSTTSEEEEEESSSTHHHHHHHHTTSEEEEEE
T ss_pred HHHHHHHHHhhhccCcccccceEEEEecccccchhhhhhccc------ccccccceecCCccccccccccccCceeeecc
Confidence 55666666666 4455 67777787644333222211 13678999999988888888999999999999
Q ss_pred CC--CCCCCCHHHHHHHHHhcC-C--CEEEEEEEcC-CCccccc--cCHHHHHHHHHHcCCEEEEEccccccccCCCC--
Q 001989 709 TD--AKGNINIEELRKAAEANR-D--NLSTLMVTYP-STHGVYE--EGIDEICKIIHDNGGQVYMDGANMNAQVGLTS-- 778 (985)
Q Consensus 709 ~d--~~g~iD~e~L~~~i~~~~-~--~t~~Vvv~~p-n~~G~i~--~di~eI~~la~~~galliVD~a~~~~~~~l~~-- 778 (985)
++ .++.+|+++|++.+++.+ + ++++|++++| |++|..- +++++|+++|+++|+++++|.++.....+-..
T Consensus 122 ~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~~~~p~nPtG~~~~~~~l~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~ 201 (363)
T PF00155_consen 122 LDSENDFHLDPEALEEALDELPSKGPRPKAVLICNPNNPTGSVLSLEELRELAELAREYNIIIIVDEAYSDLIFGDPDFG 201 (363)
T ss_dssp EEETTTTEETHHHHHHHHHTSHTTTETEEEEEEESSBTTTTBB--HHHHHHHHHHHHHTTSEEEEEETTTTGBSSSSHTH
T ss_pred ccccccccccccccccccccccccccccceeeecccccccccccccccccchhhhhcccccceeeeeceeccccCCCccC
Confidence 64 467899999999998421 1 5789999999 4799875 24666666699999999999998422211000
Q ss_pred ---C-CccCCc-EEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHH
Q 001989 779 ---P-GYIGAD-VCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALIL 853 (985)
Q Consensus 779 ---p-g~~g~D-i~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~ 853 (985)
. ...+.+ +++.|++|.|+.| |.++|++++++++.+.+..... ....+ + .++.
T Consensus 202 ~~~~~~~~~~~vi~~~S~SK~~g~~----GlRvG~i~~~~~~~~~l~~~~~--------------~~~~~-~-~~~~--- 258 (363)
T PF00155_consen 202 PIRSLLDEDDNVIVVGSLSKSFGLP----GLRVGYIVAPPELIERLRRFQR--------------SGLSS-S-PMQA--- 258 (363)
T ss_dssp HHHGHHTTTSTEEEEEESTTTTTSG----GGTEEEEEEEHHHHHHHHHHHH--------------HTTSS-H-HHHH---
T ss_pred cccccccccccceeeeecccccccc----ccccccccchhhhhhhhhhccc--------------ccccc-c-hhhH---
Confidence 0 011234 7788888988554 6779999998766655431100 00111 1 1111
Q ss_pred HHHHHHHHHhcH--HHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHC
Q 001989 854 PISYTYIAMMGS--KGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDY 930 (985)
Q Consensus 854 ~~a~a~l~~lg~--eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~ 930 (985)
.+...+..-+. +-+++..++..++++++.+.|++ ++.+. .++ +..+ +.+..+ ..+..++.+.|.++
T Consensus 259 -~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~~~~~~-~~~-~~~~--~~~~~~------~~~~~~l~~~L~~~ 327 (363)
T PF00155_consen 259 -AAAAALSDPELVEKWLEELRERLRENRDLLREALEEIGITVL-PPE-AGFF--LWVRLD------PNDAEELAQELLEE 327 (363)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSEEE-HHS-BSSE--EEEEES------HHHHHHHHHHHHHH
T ss_pred -HHHHhhhcccccccccccchhhHHHHHHHHHHHHHHhhhhee-ecc-CccE--EEEEcc------cchHHHHHHHHHHh
Confidence 11122222221 14456666778888999999976 44442 221 2222 233333 11467899999998
Q ss_pred -CCccCCC-CCCCCCEEEEeccCCCCHHHHHH
Q 001989 931 -GFHGPTM-SWPVPGTLMIEPTESESKSWTGI 960 (985)
Q Consensus 931 -Gi~~~~~-~~p~~~~lris~t~~~t~eeId~ 960 (985)
||.+... .+..++++||++ ...++|++++
T Consensus 328 ~gi~v~pg~~~~~~~~iRi~~-a~~~~e~~~~ 358 (363)
T PF00155_consen 328 YGILVRPGSYFGVPGYIRISL-ASHSEEDLEE 358 (363)
T ss_dssp HTEEEEEGGGGTSTTEEEEEG-GCSCHHHHHH
T ss_pred CCEEEEecCCCCCCCEEEEEe-ccCCHHHHHH
Confidence 9986542 233468999999 8899999999
|
On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A .... |
| >PLN02242 methionine gamma-lyase | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.1e-14 Score=169.19 Aligned_cols=220 Identities=18% Similarity=0.192 Sum_probs=151.6
Q ss_pred HHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHH-----HHCCcEEEEEc
Q 001989 634 FNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATA-----AMCGMKIVSVG 708 (985)
Q Consensus 634 ~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a-----~~~G~~vv~v~ 708 (985)
.+++++.+++++|.+.+. .++||++|+.++++++. +++|+||++...++.+.... +..|++++.++
T Consensus 78 ~~~LE~~lA~l~g~~~~l-~~~sG~~Ai~~al~al~--------~~GD~Vl~~~~~Y~~~~~~~~~~~~~~~G~~~~~~d 148 (418)
T PLN02242 78 VLNLGRQMAALEGTEAAY-CTASGMSAISSVLLQLC--------SSGGHVVASNTLYGGTHALLAHFLPRKCNITTTFVD 148 (418)
T ss_pred HHHHHHHHHHHhCCCeEE-EEccHHHHHHHHHHHHh--------CCCCEEEEcCCcHHHHHHHHHHhhhhccCceEEEcC
Confidence 458899999999998764 45778887765555442 37899999887665554432 34788888777
Q ss_pred CCCCCCCCHHHHHHHHHhcCC-CEEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCccCCcE
Q 001989 709 TDAKGNINIEELRKAAEANRD-NLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIGADV 786 (985)
Q Consensus 709 ~d~~g~iD~e~L~~~i~~~~~-~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~g~Di 786 (985)
.+ |+++++++++ + +|++|++++| |++|.+. |+++|+++||++|+++++|.++. .. ...+..+|+|+
T Consensus 149 ~~-----d~e~l~~~i~---~~~tklV~lesp~NPtG~v~-dl~~I~~la~~~gi~livDea~~--~~-~~~~~~~g~di 216 (418)
T PLN02242 149 IT-----DLEAVKKAVV---PGKTKVLYFESISNPTLTVA-DIPELARIAHEKGVTVVVDNTFA--PM-VLSPARLGADV 216 (418)
T ss_pred CC-----CHHHHHHhcC---cCCCEEEEEecCCCCCCccc-CHHHHHHHHHHhCCEEEEECCCC--cc-CCCHHHcCCcE
Confidence 63 8999999997 6 4999999998 5799998 89999999999999999999874 12 23556678999
Q ss_pred EEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHH
Q 001989 787 CHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSK 866 (985)
Q Consensus 787 ~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~e 866 (985)
++.|++|+|+.+ |...+|++++++++...+.....+ +....+.. .....||.. ..+.+
T Consensus 217 vv~S~SK~l~g~---g~~~gG~iv~~~~li~~l~~~~~~---------~~~~~g~~--------~~~~~A~l~--~~~l~ 274 (418)
T PLN02242 217 VVHSISKFISGG---ADIIAGAVCGPAELVNSMMDLHHG---------ALMLLGPT--------MNPKVAFEL--SERLP 274 (418)
T ss_pred EEEeCccccCCC---CCceEEEEEcCHHHHHHHHHHhhh---------hhhccCCC--------CCHHHHHHH--HcCCC
Confidence 999999998532 222368888887665443211000 00001111 111223333 33444
Q ss_pred HHHHHHHHHHHHHHHHHHHhhc-cCCeeecC
Q 001989 867 GLTEASKIAILNANYMAKRLEK-HYPILFRG 896 (985)
Q Consensus 867 Gl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~ 896 (985)
.+..+.++..++++++++.|++ ++.+.+++
T Consensus 275 tl~~r~~~~~~~a~~la~~L~~~~~~V~yP~ 305 (418)
T PLN02242 275 HLSLRMKEHCRRAMEYAKRMKELGLKVIYPG 305 (418)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhCCCEEECCC
Confidence 5666677888999999999987 45565544
|
|
| >PRK06767 methionine gamma-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=6.2e-15 Score=170.13 Aligned_cols=211 Identities=16% Similarity=0.092 Sum_probs=145.1
Q ss_pred HHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHH----HHHCCcEEEEEcC
Q 001989 634 FNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPAT----AAMCGMKIVSVGT 709 (985)
Q Consensus 634 ~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~----a~~~G~~vv~v~~ 709 (985)
..++++.+++++|.+. .+.+++|+.|+.+++.++. .++++||+++..|+..... +...|+++..++.
T Consensus 63 ~~~Le~~lA~l~G~~~-al~~~sG~~Ai~~~l~al~--------~~Gd~Vv~~~~~y~~~~~~~~~~~~~~gi~~~~~~~ 133 (386)
T PRK06767 63 VKLFEERMAVLEGGEE-ALAFGSGMAAISATLIGFL--------KAGDHIICSNGLYGCTYGFLEVLEEKFMITHSFCDM 133 (386)
T ss_pred hHHHHHHHHHHhCCCc-EEEECCHHHHHHHHHHHHh--------CCCCEEEEcCCcHHHHHHHHHHHHhhcCeEEEEeCC
Confidence 3478899999999865 4556778776644444332 3788999988777654333 2345777777765
Q ss_pred CCCCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCccCCcEEE
Q 001989 710 DAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIGADVCH 788 (985)
Q Consensus 710 d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~g~Di~~ 788 (985)
.|+++++++++ ++|++|++++| |++|.+. |+++|.++||++|+++++|+++.. +.+..|...|+|+++
T Consensus 134 -----~d~~~l~~~i~---~~tklV~lesp~NptG~v~-dl~~I~~la~~~g~~vivD~a~a~--~~~~~pl~~g~Div~ 202 (386)
T PRK06767 134 -----ETEADIENKIR---PNTKLIFVETPINPTMKLI-DLKQVIRVAKRNGLLVIVDNTFCS--PYLQRPLELGCDAVV 202 (386)
T ss_pred -----CCHHHHHHhhC---cCceEEEEeCCCCCCceec-CHHHHHHHHHHcCCEEEEECCCcc--cccCCchhcCCcEEE
Confidence 38999999997 78999999999 4699998 899999999999999999999742 223456678999999
Q ss_pred eCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHHH
Q 001989 789 LNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGL 868 (985)
Q Consensus 789 ~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl 868 (985)
.|++|+|+.+ |.+.+|+++++++.+..+..... ...+...+ + ..+|..+..+ +.+
T Consensus 203 ~S~sK~l~g~---g~~~gG~v~~~~~~i~~~~~~~~------------~~~g~~~~-----~---~~a~l~~~~L--~tl 257 (386)
T PRK06767 203 HSATKYIGGH---GDVVAGVTICKTRALAEKIRPMR------------KDIGGIMA-----P---FDAWLLLRGL--KTL 257 (386)
T ss_pred ecCcceecCC---CCceeEEEEeChHHHHHHHHHHH------------HHhCCCCC-----H---HHHHHHHcCC--CcH
Confidence 9999998522 22336899888765433211000 00111111 1 1133444433 334
Q ss_pred HHHHHHHHHHHHHHHHHhhcc
Q 001989 869 TEASKIAILNANYMAKRLEKH 889 (985)
Q Consensus 869 ~~~~~~~~~~a~~l~~~L~~g 889 (985)
..+.++..+++.++++.|++.
T Consensus 258 ~~r~~~~~~~a~~la~~L~~~ 278 (386)
T PRK06767 258 AVRMDRHCDNAEKIVSFLKNH 278 (386)
T ss_pred HHHHHHHHHHHHHHHHHHHcC
Confidence 556677889999999999874
|
|
| >PRK00011 glyA serine hydroxymethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.65 E-value=3.4e-14 Score=166.06 Aligned_cols=272 Identities=14% Similarity=0.126 Sum_probs=173.5
Q ss_pred HHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHH-hhcCCCeEEEEeCc------
Q 001989 216 FQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICIT-RADGFDIKVVVSDL------ 288 (985)
Q Consensus 216 ~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~-~a~~~gi~v~~v~~------ 288 (985)
++..+++++|.+.+++.+ .+||.++++++.++ . ++||+|+++...|+++...+.. .....|++++.++.
T Consensus 76 ~~~~la~~~g~~~~~i~~-~sgt~al~~~l~~l-~--~~gd~Vl~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 151 (416)
T PRK00011 76 AIDRAKELFGAEYANVQP-HSGSQANAAVYFAL-L--KPGDTILGMDLAHGGHLTHGSPVNFSGKLYNVVSYGVDEETGL 151 (416)
T ss_pred HHHHHHHHhCCCceeeec-CCchHHHHHHHHHh-c--CCCCEEEEeccccCCccccccccccccceeeEeecCcCcccCC
Confidence 456899999998866543 45677766655554 3 3899999999999875433211 11234666666543
Q ss_pred ---hhhhc-cC-CCEeEEEEEcCCCCeeeccHHHHHHHHHhCCcEEEEEecCccccCC-----CCCCcccceEEEecC-c
Q 001989 289 ---KDIDY-KS-GDVCGVLVQYPGTEGEVLDYGDFIKNAHANGVKVVMATDLLALTIL-----KPPGELGADIVVGSA-Q 357 (985)
Q Consensus 289 ---~~l~~-l~-~~t~~V~v~~pn~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l-----~~~~~~GaDi~v~s~-k 357 (985)
+++++ +. .++++|++..+ .+|...|+++|+++||++|+++++|+ .++.|.. ..+-. ++|++++|+ |
T Consensus 152 ~d~~~l~~~i~~~~~k~v~~~~~-~~~~~~~~~~I~~la~~~~~~livD~-a~~~g~~~~g~~~~~~~-~~di~~~S~~K 228 (416)
T PRK00011 152 IDYDEVEKLALEHKPKLIIAGAS-AYSRPIDFKRFREIADEVGAYLMVDM-AHIAGLVAAGVHPSPVP-HADVVTTTTHK 228 (416)
T ss_pred cCHHHHHHHHHhcCCCEEEECCC-cCCCccCHHHHHHHHHHcCCEEEEEC-cchhcccccCccCCCCC-CCcEEEecCCc
Confidence 45555 54 37888887654 45777899999999999999999943 2333322 12233 789999998 6
Q ss_pred cccccCCCCCCcEEEEEEc-hhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHHH
Q 001989 358 RFGVPMGYGGPHAAFLATS-QEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAV 436 (985)
Q Consensus 358 ~lg~P~~~GGP~~G~l~~~-~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~ 436 (985)
+|+ ||.+|++.++ +++.+++.... .. + ..+++. .....++.++. .
T Consensus 229 ~l~------g~~gg~i~~~~~~~~~~l~~~~---------~~-~-------------~~~~~~---~~~~aa~~~a~--~ 274 (416)
T PRK00011 229 TLR------GPRGGLILTNDEELAKKINSAV---------FP-G-------------IQGGPL---MHVIAAKAVAF--K 274 (416)
T ss_pred CCC------CCCceEEEeCCHHHHHHHHHHh---------Cc-c-------------ccCCcc---HHHHHHHHHHH--H
Confidence 563 3445677774 56665541000 00 0 001111 11222222222 2
Q ss_pred HhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcC-CCCcceEEEecC----CHHHHHHHHHHcCceeee----e-----
Q 001989 437 YHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQG-LPFFDTVKVKCA----DAHAIASAAYKIEMNLRV----V----- 502 (985)
Q Consensus 437 ~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~-~~~~~~~~~~~~----~~~~v~~~L~~~GI~~~~----~----- 502 (985)
....++++++.++..++++++++.|++.| +++.. ....+.+.+..+ ...++.+.|.++||.++. .
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~L~~~GI~v~~~~~p~~~~~~ 353 (416)
T PRK00011 275 EALEPEFKEYAQQVVKNAKALAEALAERG-FRVVSGGTDNHLVLVDLRSKGLTGKEAEAALEEANITVNKNAVPFDPRSP 353 (416)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHhCC-CeeeecCCCCeEEEEeCcccCCCHHHHHHHHHHcCcEEccCcCCCCCCCC
Confidence 22345788899999999999999999987 88753 222233445443 267888999999998752 1
Q ss_pred -cCCeEEEEecc----CCCHHHHHHHHHHHhC
Q 001989 503 -DSNTVTASFDE----TTTLEDVDKLFIVFAG 529 (985)
Q Consensus 503 -~~~~lris~t~----~~t~edId~li~aL~~ 529 (985)
.+..+|++.+. ..|++|+++++++|..
T Consensus 354 ~~~~~~Ri~~~~~~~~~~t~~di~~l~~~l~~ 385 (416)
T PRK00011 354 FVTSGIRIGTPAITTRGFKEAEMKEIAELIAD 385 (416)
T ss_pred CCCCceEecCHHHhhcCcCHHHHHHHHHHHHH
Confidence 13568987644 4579999999999974
|
|
| >PLN02656 tyrosine transaminase | Back alignment and domain information |
|---|
Probab=99.65 E-value=3.1e-14 Score=166.00 Aligned_cols=306 Identities=13% Similarity=0.059 Sum_probs=180.5
Q ss_pred hhHHHHHHHHHHHHHHHhCC--Cccceec-CcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEE
Q 001989 628 QGYQEMFNNLGEWLCTITGF--DSFSLQP-NAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKI 704 (985)
Q Consensus 628 ~G~~~~~~e~~~~la~l~G~--~~~~~~~-~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~v 704 (985)
+|..++.+.+.+++....|. +...+.. +++++|... +++.+. .++|+|+++++.|+.+...++..|+++
T Consensus 73 ~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~---~~~~l~-----~~gd~Vlv~~p~y~~~~~~~~~~g~~~ 144 (409)
T PLN02656 73 VGLPQARRAIAEYLSRDLPYKLSLDDVFITSGCTQAIDV---ALSMLA-----RPGANILLPRPGFPIYELCAAFRHLEV 144 (409)
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCcccEEEeCChHHHHHH---HHHHHh-----CCCCeEEEeCCCCCcHHHHHHHcCCEE
Confidence 56555555555555544443 3344444 444445433 333321 378899999998877777778899999
Q ss_pred EEEcCCC--CCCCCHHHHHHHHHhcCCCEEEEEEEcCC-Cccccc--cCHHHHHHHHHHcCCEEEEEcccccc-ccCCC-
Q 001989 705 VSVGTDA--KGNINIEELRKAAEANRDNLSTLMVTYPS-THGVYE--EGIDEICKIIHDNGGQVYMDGANMNA-QVGLT- 777 (985)
Q Consensus 705 v~v~~d~--~g~iD~e~L~~~i~~~~~~t~~Vvv~~pn-~~G~i~--~di~eI~~la~~~galliVD~a~~~~-~~~l~- 777 (985)
+.+|+++ ++.+|+++++++++ +++++|++++|+ ++|.+. .++++|+++|+++|+++++|+++..- ..+-.
T Consensus 145 ~~i~~~~~~~~~~d~~~l~~~~~---~~~~~v~l~~P~NPtG~~~s~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~ 221 (409)
T PLN02656 145 RYVDLLPEKGWEVDLDAVEALAD---QNTVALVIINPGNPCGNVYSYQHLKKIAETAEKLKILVIADEVYGHLAFGSNPF 221 (409)
T ss_pred EEEeCCCcCCCCCCHHHHHHHhc---cCceEEEEECCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEehhhhhcccCCCCc
Confidence 9999853 35799999999987 788999999994 799883 26999999999999999999987411 11100
Q ss_pred CC-Ccc---CCcEEEeCCcccccccCCCCCCceEEEEEcc--------cccCcCCCCccccCCCCCCCCCCCCCCCCCCc
Q 001989 778 SP-GYI---GADVCHLNLHKTFCIPHGGGGPGMGPIGVKK--------HLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAA 845 (985)
Q Consensus 778 ~p-g~~---g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~--------~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~ 845 (985)
.+ ..+ ..=+++.|+.|+|++| |.++|++++.+ ++...+... .. ....++
T Consensus 222 ~~~~~~~~~~~vi~~~SfSK~f~~p----GlRiG~~i~~~~~~~~~~~~~~~~~~~~------------~~-~~~~~s-- 282 (409)
T PLN02656 222 VPMGVFGSIVPVLTLGSLSKRWIVP----GWRLGWFVTTDPSGSFRDPKIVERIKKY------------FD-ILGGPA-- 282 (409)
T ss_pred ccHHHhcccCcEEEEcccchhccCc----ceeEEEEEEeCcccccccHHHHHHHHHH------------Hh-hhcCCC--
Confidence 11 111 1225677888988654 78999999842 232222100 00 000111
Q ss_pred chhhhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhccCCee-ecCCCCceeeEEEEEecCccccCCC-CHHHH
Q 001989 846 PWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPIL-FRGVNGTVAHEFIVDLRGLKNTAGI-EPEDV 923 (985)
Q Consensus 846 ~~g~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~g~~l~-~~~~~~~~~~~~iv~~~~~~~~~g~-~~~~v 923 (985)
...+ .++..++.....+-+++..++..++++++.+.|++..... ...+.+..+ +.++++... ..+. +..++
T Consensus 283 ~~~q----~a~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~L~~~~~~~~~~~p~gg~~--~w~~l~~~~-~~~~~~~~~~ 355 (409)
T PLN02656 283 TFIQ----AAVPTILEQTDESFFKKTINILKQSSDICCDRIKEIPCITCPHKPEGSMA--VMVKLNLSL-LEDISDDIDF 355 (409)
T ss_pred HHHH----HHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHhhCCCCcCCcCCCeEEE--EEEecchhh-cCCCCCHHHH
Confidence 1111 1122333321233455556666777888888887621111 112222222 234443100 0011 24444
Q ss_pred -HHHHHHCCCccCC-CCCCCCCEEEEeccCCCCHHHHHHHHccCChhHHHHhh
Q 001989 924 -AKRLMDYGFHGPT-MSWPVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRL 974 (985)
Q Consensus 924 -~~~L~~~Gi~~~~-~~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~ 974 (985)
.+.|.++|+.+.. ..|..++++||+++. +.+++++ .++.|++++++.
T Consensus 356 ~~~~l~~~gV~v~pg~~fg~~~~iRi~~~~--~~e~l~e--al~rl~~~~~~~ 404 (409)
T PLN02656 356 CFKLAREESVIILPGTAVGLKNWLRITFAA--DPSSLEE--ALGRIKSFYLRH 404 (409)
T ss_pred HHHHHHhCCEEEecchhcCCCCeEEEEeCC--CHHHHHH--HHHHHHHHHHHh
Confidence 4667778998643 234446899999984 6888888 677777776643
|
|
| >PRK06777 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=3.1e-14 Score=166.00 Aligned_cols=323 Identities=15% Similarity=0.192 Sum_probs=193.0
Q ss_pred ccccccccCCCccccccccccccccc-cCCCCchhhhhhHHHHHHHHHHHHHHHhCCC--ccceecCcHHHHHHHHHHHH
Q 001989 592 IPLGSCTMKLNATTEMMPVTWPSFAN-IHPFAPADQAQGYQEMFNNLGEWLCTITGFD--SFSLQPNAGAAGEYAGLMVI 668 (985)
Q Consensus 592 ~~lG~~t~~~~~~~~~~~~~~~~f~~-~~p~~p~e~~~G~~~~~~e~~~~la~l~G~~--~~~~~~~sGa~a~~a~l~ai 668 (985)
..||++++.+..+...+......... .++. +...++.+.+++++... ...++.+||++|++++++.+
T Consensus 52 ~~lGh~~p~v~~ai~~ql~~~~~~~~~~~~~----------~~~~~la~~l~~~~p~~~~~~~~f~~sGseA~e~AlklA 121 (421)
T PRK06777 52 LNTGHRHPKVVAAVRQQLDQFTHTAYQIVPY----------ASYVTLAERINALAPIDGPAKTAFFTTGAEAVENAVKIA 121 (421)
T ss_pred hccCCCCHHHHHHHHHHHhhcccccccccCC----------hHHHHHHHHHHHhCCCCCCceEEEeCCcHHHHHHHHHHH
Confidence 45888888777665544322111111 1111 11336777788887532 23466789999999999998
Q ss_pred HHHHHhcCCCCCCEEEE-cCCCCcccHHHHHHCCc-------------EEEEEcCCCC--C---CCCHHHHHHHHHh--c
Q 001989 669 RAYHKARGDHHRNVCII-PVSAHGTNPATAAMCGM-------------KIVSVGTDAK--G---NINIEELRKAAEA--N 727 (985)
Q Consensus 669 r~~~~~~g~~~~~~IIv-~~~~Hg~~~~~a~~~G~-------------~vv~v~~d~~--g---~iD~e~L~~~i~~--~ 727 (985)
|.| +++.+||. ...+||....+....|. .+..+|.... + ..|++++++.+++ +
T Consensus 122 r~~------tgr~~ii~~~~~yHG~t~~~~s~t~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~~~~~~~~ 195 (421)
T PRK06777 122 RAY------TGRPGVIAFGGAFHGRTLLTMALTGKVAPYKVGFGPFPGSIFHALYPNELHGVSVEEALSSVERLFKADIA 195 (421)
T ss_pred HHh------hCCCeEEEEcCCcCCccHHHHhhcCCCcccccCCCCCCCCcEEcCCCccccCcCHHHHHHHHHHHHHhccC
Confidence 876 23456665 67899988666543221 1222332111 1 1236778888863 3
Q ss_pred CCCEEEEEEEcC-CCccccccC---HHHHHHHHHHcCCEEEEEccccccccCCCCCCc------c--CCcEEEeCCcccc
Q 001989 728 RDNLSTLMVTYP-STHGVYEEG---IDEICKIIHDNGGQVYMDGANMNAQVGLTSPGY------I--GADVCHLNLHKTF 795 (985)
Q Consensus 728 ~~~t~~Vvv~~p-n~~G~i~~d---i~eI~~la~~~galliVD~a~~~~~~~l~~pg~------~--g~Di~~~s~hK~l 795 (985)
.+++++|+++-. +..|+..++ +++|.++|+++|+++|+|+++. ++ .+.+. + .+|++++ .|.+
T Consensus 196 ~~~iaavi~Epv~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~t-g~---gr~g~~~~~~~~~~~pDiv~~--sK~l 269 (421)
T PRK06777 196 PDQVAAILLEPIQGEGGFNVAPPEFMSALRTLCDEHGILLIADEVQT-GF---ARTGKLFAMEYYDVKPDLITM--AKSL 269 (421)
T ss_pred CCceEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhh-CC---ccCCchhhhhhcCCCCCEEee--ehhh
Confidence 457888887643 345654323 9999999999999999999874 22 22221 2 2687754 4766
Q ss_pred cccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHHHHHHHHHH
Q 001989 796 CIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIA 875 (985)
Q Consensus 796 ~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl~~~~~~~ 875 (985)
+ ||..+|++++++++.+.+.... ..+++.|+++.++++.+.|..+..+. ..++.
T Consensus 270 ----~-~G~pigav~~~~~i~~~~~~~~------------------~~~T~~~~p~~~aaa~a~L~~~~~~~---l~~~~ 323 (421)
T PRK06777 270 ----G-GGMPISAVVGRAEVMDAPAPGG------------------LGGTYAGNPLAVAAALAVLDVIAEEK---LCQRA 323 (421)
T ss_pred ----c-CCCceEEEEEcHHHHhccCCCC------------------CCCCCCcCHHHHHHHHHHHHHHHhcc---HHHHH
Confidence 3 4566888888887765543210 01123345666777777787765543 44567
Q ss_pred HHHHHHHHHHhhcc---CCee--ecCCCCceeeEEEEEecCccccCCCC----HHHHHHHHHHCCCccCCCCCCCCCEEE
Q 001989 876 ILNANYMAKRLEKH---YPIL--FRGVNGTVAHEFIVDLRGLKNTAGIE----PEDVAKRLMDYGFHGPTMSWPVPGTLM 946 (985)
Q Consensus 876 ~~~a~~l~~~L~~g---~~l~--~~~~~~~~~~~~iv~~~~~~~~~g~~----~~~v~~~L~~~Gi~~~~~~~p~~~~lr 946 (985)
.++.++++++|++. .+++ ..+ .+..+ .+.+.. ...+.+ ...+.+.|.++|+.+..... ..+.+|
T Consensus 324 ~~~g~~l~~~L~~l~~~~~~i~~vrg-~G~~~---~i~~~~--~~~~~~~~~~~~~l~~~~~~~Gv~i~~~~~-~g~~lr 396 (421)
T PRK06777 324 LILGAHLVEVLEKAKASCPAIVDIRA-RGSMV---AVEFND--PQTGKPSPEFTRQYQRQALEEGLLLLSCGV-HGNVIR 396 (421)
T ss_pred HHHHHHHHHHHHHHHHhCCCeEEecC-ceEEE---EEEEec--CccCCccHHHHHHHHHHHHhCCeEEeecCC-CCCEEE
Confidence 77888898888752 2221 112 12222 222210 001111 23455666889998754321 137999
Q ss_pred EeccCCCCHHHHHHHHccCChhHHH
Q 001989 947 IEPTESESKSWTGIVMLSSPSEKKL 971 (985)
Q Consensus 947 is~t~~~t~eeId~~~~~~~l~~~~ 971 (985)
|+|+...|++|||+ .++.|++.+
T Consensus 397 ~~ppl~i~~~~i~~--~~~~l~~~l 419 (421)
T PRK06777 397 FLYPLTIPDAQFSK--ALNILTRLL 419 (421)
T ss_pred EeCCCCCCHHHHHH--HHHHHHHHH
Confidence 99999999999999 667777765
|
|
| >PRK13355 bifunctional HTH-domain containing protein/aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.8e-14 Score=172.71 Aligned_cols=310 Identities=13% Similarity=0.049 Sum_probs=177.2
Q ss_pred hhhHHHHHHHHHHHHHHHh--CCCccceecCcHHH-HHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcE
Q 001989 627 AQGYQEMFNNLGEWLCTIT--GFDSFSLQPNAGAA-GEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMK 703 (985)
Q Consensus 627 ~~G~~~~~~e~~~~la~l~--G~~~~~~~~~sGa~-a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~ 703 (985)
.+|..++.+.+.+++.+.. +.+...+..++|++ +.. ++++.+. ++||+|+++++.+..+...++..|++
T Consensus 184 ~~G~~~lReaia~~~~~~~~~~~~~~~I~it~G~~eal~---~~~~~l~-----~~Gd~Vli~~P~y~~y~~~~~~~g~~ 255 (517)
T PRK13355 184 SKGLFSARKAIMQYAQLKGLPNVDVDDIYTGNGVSELIN---LSMSALL-----DDGDEVLIPSPDYPLWTACVNLAGGT 255 (517)
T ss_pred CcChHHHHHHHHHHHHhcCCCCCChhHEEEeCcHHHHHH---HHHHHhC-----CCCCEEEEcCCCCcCHHHHHHHCCCE
Confidence 4676555544444443322 34445555555544 442 3333321 47899999999888888888899999
Q ss_pred EEEEcCCC--CCCCCHHHHHHHHHhcCCCEEEEEEEcCC-Cccccc--cCHHHHHHHHHHcCCEEEEEccccccc-cC--
Q 001989 704 IVSVGTDA--KGNINIEELRKAAEANRDNLSTLMVTYPS-THGVYE--EGIDEICKIIHDNGGQVYMDGANMNAQ-VG-- 775 (985)
Q Consensus 704 vv~v~~d~--~g~iD~e~L~~~i~~~~~~t~~Vvv~~pn-~~G~i~--~di~eI~~la~~~galliVD~a~~~~~-~~-- 775 (985)
++.+++++ ++.+|+++|+++++ ++|++|++++|| ++|.+. ..+++|.++|+++|+++++|+++..-. .+
T Consensus 256 ~v~~~~~~~~~~~~d~~~l~~~~~---~~~k~i~i~nP~NPTG~v~~~~~l~~i~~~a~~~~~~ii~DE~Y~~~~~~~~~ 332 (517)
T PRK13355 256 AVHYRCDEQSEWYPDIDDIRSKIT---SRTKAIVIINPNNPTGALYPREVLQQIVDIAREHQLIIFSDEIYDRLVMDGLE 332 (517)
T ss_pred EEEeecCcccCCCCCHHHHHHhcC---cCceEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEehhhhhhcCCCCC
Confidence 99998865 36799999999997 789999999994 799886 138999999999999999999873111 11
Q ss_pred CCCCCccCCcE--E-EeCCcccccccCCCCCCceEEEEEc--ccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhh
Q 001989 776 LTSPGYIGADV--C-HLNLHKTFCIPHGGGGPGMGPIGVK--KHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSA 850 (985)
Q Consensus 776 l~~pg~~g~Di--~-~~s~hK~l~~p~g~GGPg~G~i~~~--~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~ 850 (985)
......+..|+ + +.|+.|+|++| |+++|++++. +++.+.+-..+ .. . .....+.+..++.
T Consensus 333 ~~s~~~~~~~~~vi~~~S~SK~~~~~----G~RiG~~i~~~~~~~~~~~~~~l-~~--------~--~~~~~~~~~~~q~ 397 (517)
T PRK13355 333 HTSIASLAPDLFCVTFSGLSKSHMIA----GYRIGWMILSGNKRIAKDYIEGL-NM--------L--ANMRLCSNVPAQS 397 (517)
T ss_pred cccHHHhCCCCeEEEEecchhhccCc----ccceEEEEeeCchhhHHHHHHHH-HH--------H--hcCcCCcChHHHH
Confidence 11111222342 2 36778888654 7899999864 32211100000 00 0 0000111111121
Q ss_pred HHHHHHHHHHHHhc--HHHHHHHHHHHHHHHHHHHHHhhccCCeeecCCCCceeeEEEEEecCccccCCCCHHHHH-HHH
Q 001989 851 LILPISYTYIAMMG--SKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVA-KRL 927 (985)
Q Consensus 851 ~~~~~a~a~l~~lg--~eGl~~~~~~~~~~a~~l~~~L~~g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~-~~L 927 (985)
++..+|.... .+-+.+ .++..++++++.+.|++..++.+..+.+.++ +.++++.-.. ...+..+++ +.|
T Consensus 398 ----a~~~aL~~~~~~~~~~~~-~~~~~~~r~~l~~~L~~~~g~~~~~p~g~fy--~~~~l~~~~~-~~~~~~~~~~~ll 469 (517)
T PRK13355 398 ----IVQTALGGHQSVKDYLVP-GGRVYEQRELVYNALNAIPGISAVKPKAAFY--IFPKIDVKKF-NIHDDEQFALDLL 469 (517)
T ss_pred ----HHHHHhcCCccHHHHHHH-HHHHHHHHHHHHHHHhcCCCcccCCCCeeeE--EEeecCcccC-CCCCHHHHHHHHH
Confidence 1112221100 111222 2344556788888887621232223333333 2334431000 001344555 456
Q ss_pred HHCCCccCC-CCCC--CCCEEEEeccCCCCHHHHHHHHccCChhHHHHhh
Q 001989 928 MDYGFHGPT-MSWP--VPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRL 974 (985)
Q Consensus 928 ~~~Gi~~~~-~~~p--~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~ 974 (985)
.++|+.+.. ..|. .++++||++. .+.++|+. .++.|.+.++..
T Consensus 470 ~~~gV~v~pg~~F~~~~~~~~Ris~~--~~~~~l~~--a~~rl~~~~~~~ 515 (517)
T PRK13355 470 HDKKVLIVQGTGFNWDKPDHFRVVYL--PRLEDLED--AMDRLADFFSYY 515 (517)
T ss_pred HhCCEEEeCcchhCCCCcCEEEEEeC--CCHHHHHH--HHHHHHHHHHHh
Confidence 778998643 2332 4589999984 67888888 778888877654
|
|
| >TIGR03531 selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium transferase | Back alignment and domain information |
|---|
Probab=99.64 E-value=8.6e-14 Score=160.72 Aligned_cols=342 Identities=17% Similarity=0.162 Sum_probs=214.6
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhcCCCc-cceecCCCCCC-CCCcHHHHHHHHhCCccccc------cCCChhhH--hhh
Q 001989 139 MKFSKFDEGLTESQMIEHMQKLASMNKV-YKSFIGMGYYN-THVPPVILRNIMENPAWYTQ------YTPYQAEI--AQG 208 (985)
Q Consensus 139 ~~lp~~~~~~se~e~~~~~~~l~~~n~~-~~~~lG~g~y~-~~~p~~v~~~i~~~~~~~t~------~~pyq~e~--sqg 208 (985)
-.|| .+++++..+...|.+|+.++.. +.+-.|.|-=. ...-+.+.+. ...|+.. ..--||.. +..
T Consensus 28 ~~~p--~~g~~~~~i~~~l~~l~~~~~~~~~~~~~~gere~rv~~~~~~~~---~~~~~hgigr~~~l~~~q~ka~gss~ 102 (444)
T TIGR03531 28 RKIP--EEGWDDETIELFLHELSVMDTNNFPNNVGVGEREGRVFSKLVARR---HYRFCHGIGRSGDLVAPQPKAAGSSL 102 (444)
T ss_pred CcCC--ccCCCHHHHHHHHHHHhcCCcCCCccccCcCcccceeechhhhhc---ccceecCCCCcccccccCccccCccH
Confidence 3677 6899999999999999987642 33334555311 1122222211 1112111 12345552 334
Q ss_pred HHHHHHHHHHHHHHhcCCCCc-ceeeccchHH-HHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEe
Q 001989 209 RLESLLNFQTMIADLTGLPMS-NASLLDEGTA-AAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVS 286 (985)
Q Consensus 209 ~l~~i~e~q~~ia~L~g~~~~-~~sl~~~~ta-~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v 286 (985)
......+++..+++++|.+.. .+.+++++|+ +...++++++..+.++++||+++..|.++.+++.. .|++++++
T Consensus 103 ~~~l~~~~e~~~~~~~G~~~~~~a~~v~~~Tg~al~laL~alr~~~~~gd~VI~p~~th~S~~kAi~~----~G~~pv~V 178 (444)
T TIGR03531 103 LYKLTNKLVKDFLKLLGLRSIKSAFVVPLATGMSLSLCLSALRHKRPKAKYVIWPRIDQKSCIKAIST----AGFEPRVI 178 (444)
T ss_pred HHHHHHHHHHHHHHHcCCCCCCEEEEECCHHHHHHHHHHHHcCCcCCCCCEEEEECcChHHHHHHHHH----cCCeEEEe
Confidence 667888899999999999732 3777889985 33333344432211579999999999999998754 57777777
Q ss_pred Cc-----------hhhhc-cCC---CEeEEEEEcCCCC--eeeccHHHHHHHHHhCCcEEEEEecCccccCCC------C
Q 001989 287 DL-----------KDIDY-KSG---DVCGVLVQYPGTE--GEVLDYGDFIKNAHANGVKVVMATDLLALTILK------P 343 (985)
Q Consensus 287 ~~-----------~~l~~-l~~---~t~~V~v~~pn~~--G~v~di~~I~~~a~~~galliV~a~~~~lg~l~------~ 343 (985)
|+ ++|++ +++ ++.++++.+|+++ |..+|+++|+++|+++|++++||+ ..+++... .
T Consensus 179 d~~~d~~~~~iD~e~Le~aIt~~~~kai~~Vv~Tp~t~~~g~~ddL~eIa~la~k~gI~lIvDa-Ayg~~~~~~~~~~~~ 257 (444)
T TIGR03531 179 ETVLDGDELTTDVEDIERAIEEIGPDNILCVLSTTSCFAPRSPDDIEEIAKICANYDIPHIVNN-AYGLQSNKYMELINK 257 (444)
T ss_pred eeeecCcCCCcCHHHHHHHHHhccCCCEEEEEEcCCcCCCcchhCHHHHHHHHHHcCCEEEEEC-cCcCcChhhhhhhhc
Confidence 62 34555 654 5566777777655 478999999999999999999953 33332211 1
Q ss_pred CCccc-ceEEEecC-ccccccCCCCCCcEEEEEE-chhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCc
Q 001989 344 PGELG-ADIVVGSA-QRFGVPMGYGGPHAAFLAT-SQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNI 420 (985)
Q Consensus 344 ~~~~G-aDi~v~s~-k~lg~P~~~GGP~~G~l~~-~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni 420 (985)
..+.| +|+++++. |++..|.+ .|++++ ++++.+.+.. . | +. +. ++
T Consensus 258 g~~~Grad~vv~s~hK~l~~pg~-----Gg~I~~~d~el~~~i~~-------~------y---------~g-~~---~~- 305 (444)
T TIGR03531 258 AIKVGRVDAVVSSTDKNFMVPVG-----GAIIYSFDENFIQEISK-------S------Y---------PG-RA---SA- 305 (444)
T ss_pred cccccCCCeEEEeCccCCCCCCC-----EEEEEECCHHHHHHHHH-------h------c---------cC-CC---CC-
Confidence 23354 79999998 87876522 366666 4556554410 0 0 00 11 00
Q ss_pred cchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcC----CCeEEcCCCCcce--EEEecC----C-HHHHH
Q 001989 421 CTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKL----GTVEVQGLPFFDT--VKVKCA----D-AHAIA 489 (985)
Q Consensus 421 ~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~----g~~~~~~~~~~~~--~~~~~~----~-~~~v~ 489 (985)
... +.+.+.+..+|.+|++++.++..++++++.+.|+++ | .++++.+ .|+ +.+... . ...+.
T Consensus 306 ---s~~--~~~~~~ll~~G~~g~~~li~~~~~~a~~l~~~L~~l~~~~~-~~~~~~~-~n~is~~~~~~~~~~~~~~~~g 378 (444)
T TIGR03531 306 ---SPS--LDVLITLLSLGSKGYLELLKERKEMYKYLKELLQKLAERHG-ERLLDTP-ENPISSAMTLSTLKGKDPTMLG 378 (444)
T ss_pred ---hHH--HHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC-cEeecCC-CCceeEEEecccccccCHHHHH
Confidence 112 223333468899999999999999999999999875 4 5666432 122 223322 2 78888
Q ss_pred HHHHHcCcee-eee---------------c--------CCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 490 SAAYKIEMNL-RVV---------------D--------SNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 490 ~~L~~~GI~~-~~~---------------~--------~~~lris~t~~~t~edId~li~aL~~ 529 (985)
..|..++|.- +.+ + -..+.+......|++|||.|++.|..
T Consensus 379 ~~l~~~~v~g~r~v~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~g~~~~~~~~~~~~l~~ 442 (444)
T TIGR03531 379 SMLYSRRVTGPRVVTNGDSKTVGGCEFKGYGSHTSNYPCPYITAAAAIGMTKEDVDTFVSRLEK 442 (444)
T ss_pred HHHHhCCCCCceeecCCCceEECCEEeecccccccCCCchhHHHHHHhCCcHHHHHHHHHHHhh
Confidence 8998887731 100 0 01345555566789999999998864
|
In the archaea and eukaryotes, the conversion of the mischarged serine to selenocysteine (Sec) on its tRNA is accomplished in two steps. This enzyme, O-phosphoseryl-tRNA(Sec) selenium transferase, acts second, after a phosphophorylation step catalyzed by a homolog of the bacterial SelA protein. |
| >COG3844 Kynureninase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.5e-14 Score=150.95 Aligned_cols=310 Identities=17% Similarity=0.130 Sum_probs=194.5
Q ss_pred hHHHHHHHHHHHHHHHhCCCccceecCcHHHHHH-HHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHH-----HHHCCc
Q 001989 629 GYQEMFNNLGEWLCTITGFDSFSLQPNAGAAGEY-AGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPAT-----AAMCGM 702 (985)
Q Consensus 629 G~~~~~~e~~~~la~l~G~~~~~~~~~sGa~a~~-a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~-----a~~~G~ 702 (985)
.+..+-+.+-.+++-+.|.....+....+++.+. ..|.+. ++ ..+++.||+++...+-..-+ +.+.|.
T Consensus 73 ~W~~lp~~lgdklApLiGA~~~Evvv~dtts~nl~k~L~aa--lr----~~~~r~vIv~E~~~fpTdly~a~g~~~~~~~ 146 (407)
T COG3844 73 DWFDLPERLGDKLAPLIGARAGEVVVTDTTSINLFKVLAAA--LR----PQEGRRVIVSEGDNFPTDLYIAEGLADLLGI 146 (407)
T ss_pred chhhchhHHHHHhhhhhcCCCCceEEeCCcchHHHHHHHHH--hc----cCCCceEEeecCCCCCcchhhhcchhhhhcc
Confidence 3444455677889999998775544433443342 222222 21 13467788877532211112 233332
Q ss_pred EEEEEcCCCCCCCCHHHHHHHHHhcCCCEEEEEEEcCCC-ccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCc
Q 001989 703 KIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPST-HGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGY 781 (985)
Q Consensus 703 ~vv~v~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~pn~-~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~ 781 (985)
. .+-.+.+++++++++++ ++++.|++++.|+ +|..- |+.+|.+++|++|+++..|-||+.+...+ ....
T Consensus 147 ~-----~~~~~~~~P~~~~~~~~---dd~AvV~L~~V~y~TGql~-dm~aiT~~AH~~galv~wDLAHsaGavp~-~Lh~ 216 (407)
T COG3844 147 G-----YDLEGVIAPRALEEAIT---DDVAVVLLSHVNYKTGQLL-DMRAITALAHQHGALVGWDLAHSAGAVPV-DLHA 216 (407)
T ss_pred c-----ccceeeeChHHHHHhhc---cceEEEEecccccccccee-eHHHHHHHHHhcCceEEeehhcccCCcce-eecc
Confidence 2 12235567889999998 9999999999986 99998 99999999999999999999997554433 4567
Q ss_pred cCCcEEEeCCcccccccCCCCCCc-eEEEEEccccc-CcCCCCccccCCCCCCC----CCCCC---CCCCCCcchhhhHH
Q 001989 782 IGADVCHLNLHKTFCIPHGGGGPG-MGPIGVKKHLA-PFLPSHPVVSTGGIPAP----EKSQP---LGTIAAAPWGSALI 852 (985)
Q Consensus 782 ~g~Di~~~s~hK~l~~p~g~GGPg-~G~i~~~~~l~-~~lp~~~~g~~~~~~~~----~~~~~---~~~i~s~~~g~~~~ 852 (985)
+|+|+.+.++||+|. |||| .+++++.++.. +..|. .-||.+..-++ ..+.+ ..-.|+++ +...
T Consensus 217 ~gaDfaigcsyKYLN-----gGPGapa~l~v~~~h~e~~~~~-lsgW~gha~pf~m~~~y~p~~ga~rf~~gt~--~V~s 288 (407)
T COG3844 217 AGADFAIGCSYKYLN-----GGPGAPAGLFVAPRHRERSWPP-LSGWWGHARPFAMEEVYAPGPGARRFLCGTQ--PVLS 288 (407)
T ss_pred cCCCeeeeeeceecc-----CCCCCceeEEeccccccccccc-cccccCCCCcchhhhccCcCccccceeeCCc--chhh
Confidence 899999999999996 7884 67777765433 33332 22332210000 00000 01122221 1111
Q ss_pred HHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc---c--CCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHH
Q 001989 853 LPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK---H--YPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRL 927 (985)
Q Consensus 853 ~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~---g--~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L 927 (985)
+++--..|....+-++.+..++...+++|+.+-++. . +++..+......-..+.+..+ ..+.|.+.|
T Consensus 289 ~aal~~aLDifa~~~i~~lR~kSlaLTd~fieLvEa~~~~~~l~l~tPr~~~~rGsqvS~~hp--------~~~~V~qaL 360 (407)
T COG3844 289 LAALEGALDIFADVDITELRKKSLALTDYFIELVEARCEYYGLTLVTPRAHEERGSQVSLYHP--------HGYQVMQAL 360 (407)
T ss_pred hHHHhhhhhhhhhcCHHHHHHhhhHHHHHHHHHHHhccccCCcEEeccchhhhccceeeEecC--------cHHHHHHHH
Confidence 122224466666667888888999999999988874 2 333322111111222334433 578999999
Q ss_pred HHCCCccCCCCCCCCCEEEEecc-CCCCHHHHHHHHccCChhHHHHhhc
Q 001989 928 MDYGFHGPTMSWPVPGTLMIEPT-ESESKSWTGIVMLSSPSEKKLHRLK 975 (985)
Q Consensus 928 ~~~Gi~~~~~~~p~~~~lris~t-~~~t~eeId~~~~~~~l~~~~~~~~ 975 (985)
.++|++.- .. .++.||+.|| .|++-+||-. .++.|.+++..+.
T Consensus 361 i~rGVigD-~R--~P~vlRfgftPlY~~~~DVw~--AV~~L~evL~t~a 404 (407)
T COG3844 361 IDRGVIGD-FR--EPDVLRFGFTPLYVSFVDVWD--AVDALEEVLDTLA 404 (407)
T ss_pred HHcCcccc-cc--CCCeeeecCccceechhHHHH--HHHHHHHHHHhhc
Confidence 99999763 22 2589999999 5899999988 8899999987653
|
|
| >PRK08068 transaminase; Reviewed | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.9e-14 Score=165.16 Aligned_cols=288 Identities=12% Similarity=0.079 Sum_probs=177.5
Q ss_pred hhHHHHHHHHHHHHHHHhCC--Ccc-ceecCcH-HHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcE
Q 001989 628 QGYQEMFNNLGEWLCTITGF--DSF-SLQPNAG-AAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMK 703 (985)
Q Consensus 628 ~G~~~~~~e~~~~la~l~G~--~~~-~~~~~sG-a~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~ 703 (985)
+|..++.+.+.+++.+.+|. +.. .+..++| .++... +++.+. .++++|+++++.++.+...++..|++
T Consensus 70 ~g~~~lr~aia~~~~~~~g~~~~~~~~i~it~G~~~~l~~---~~~~~~-----~~gd~vlv~~P~y~~~~~~~~~~g~~ 141 (389)
T PRK08068 70 RGYPFLKEAAADFYKREYGVTLDPETEVAILFGGKAGLVE---LPQCLM-----NPGDTILVPDPGYPDYLSGVALARAQ 141 (389)
T ss_pred CCCHHHHHHHHHHHHHHhCCCCCCCccEEEcCCcHHHHHH---HHHHhC-----CCCCEEEEcCCCCcchHHHHHhcCCE
Confidence 56655555555555555564 333 4444444 444432 233321 46789999999888888888899999
Q ss_pred EEEEcCCCC--CCCCHHHHHHHHHhcCCCEEEEEEEcCC-Cccccc--cCHHHHHHHHHHcCCEEEEEccccc-cccC--
Q 001989 704 IVSVGTDAK--GNINIEELRKAAEANRDNLSTLMVTYPS-THGVYE--EGIDEICKIIHDNGGQVYMDGANMN-AQVG-- 775 (985)
Q Consensus 704 vv~v~~d~~--g~iD~e~L~~~i~~~~~~t~~Vvv~~pn-~~G~i~--~di~eI~~la~~~galliVD~a~~~-~~~~-- 775 (985)
++.+|++++ ..+|+++++++++ +++++|++++|| ++|.+. ..+++|.++|+++|+++++|.++.. ...+
T Consensus 142 ~~~i~~~~~~~~~~d~~~l~~~~~---~~~~~v~l~~P~NPTG~~~s~~~~~~l~~la~~~~~~ii~Deay~~~~~~~~~ 218 (389)
T PRK08068 142 FETMPLIAENNFLPDYTKIPEEVA---EKAKLMYLNYPNNPTGAVATKAFFEETVAFAKKHNIGVVHDFAYGAIGFDGQK 218 (389)
T ss_pred EEEeecccccCCCCCHHHHHHhcc---ccceEEEEECCCCCCCCcCCHHHHHHHHHHHHHcCeEEEEehhhhhhccCCCC
Confidence 999999753 5789999999886 678999999994 799986 1357888899999999999998731 1111
Q ss_pred C----CCCCccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhH
Q 001989 776 L----TSPGYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSAL 851 (985)
Q Consensus 776 l----~~pg~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~ 851 (985)
. ...+.....+++.|+.|.|+.| |.++|++++++++...+.... ....++. .+.
T Consensus 219 ~~s~~~~~~~~~~~i~~~S~SK~~g~~----GlRiG~~~~~~~l~~~l~~~~--------------~~~~~~~----~~~ 276 (389)
T PRK08068 219 PVSFLQTPGAKDVGIELYTLSKTFNMA----GWRVAFAVGNESVIEAINLLQ--------------DHLFVSL----FGA 276 (389)
T ss_pred CcChhhCCCccCCEEEEecchhccCCc----cceeEeEecCHHHHHHHHHHH--------------hhccCCC----ChH
Confidence 0 0011112347778888988654 678999998877655432110 0001111 001
Q ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHH-
Q 001989 852 ILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMD- 929 (985)
Q Consensus 852 ~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~- 929 (985)
...++..++. -+.+-+++..++..++++++.+.|++ ++.+ ..+.+.++ +.+.++ .+.+..++++.|.+
T Consensus 277 ~q~~~~~~l~-~~~~~~~~~~~~~~~~r~~~~~~L~~~g~~~--~~~~g~~~--~~v~~~-----~~~~~~~~~~~l~~~ 346 (389)
T PRK08068 277 IQDAAIEALL-SDQSCVAELVARYESRRNAFISACREIGWEV--DAPKGSFF--AWMPVP-----KGYTSEQFADLLLEK 346 (389)
T ss_pred HHHHHHHHHh-CcHHHHHHHHHHHHHHHHHHHHHHHHCCCcc--cCCCeeEE--EEEECC-----CCCCHHHHHHHHHHh
Confidence 1111112222 12344555566677788889998876 4432 22222222 245554 13577899999986
Q ss_pred CCCccCCC-CCC--CCCEEEEeccCCCCHHHHHH
Q 001989 930 YGFHGPTM-SWP--VPGTLMIEPTESESKSWTGI 960 (985)
Q Consensus 930 ~Gi~~~~~-~~p--~~~~lris~t~~~t~eeId~ 960 (985)
+||.+... .|+ ..+++||++. .+++.+..
T Consensus 347 ~gi~v~pg~~f~~~~~~~iRi~~~--~~~~~l~~ 378 (389)
T PRK08068 347 AHVAVAPGNGFGEHGEGYVRVGLL--TDEERLRE 378 (389)
T ss_pred CCEEEecchHhCccCCCeEEEEEc--CCHHHHHH
Confidence 59987542 232 2479999995 34555555
|
|
| >TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.4e-14 Score=166.46 Aligned_cols=208 Identities=19% Similarity=0.174 Sum_probs=145.4
Q ss_pred HHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHH----HHHCCcEEEEEcC
Q 001989 634 FNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPAT----AAMCGMKIVSVGT 709 (985)
Q Consensus 634 ~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~----a~~~G~~vv~v~~ 709 (985)
.+++++.+++++|.+.. +.+++|+.|..+++ . .. +++|+||+++..|+.+... +...|++++.++.
T Consensus 49 ~~~le~~la~l~g~~~~-l~~~sG~~al~~~l---~-ll-----~~Gd~Vl~~~~~y~~~~~~~~~~~~~~G~~v~~vd~ 118 (378)
T TIGR01329 49 RTALESLLAKLDKADRA-FAFSSGMAALDVIT---R-LL-----NNGDEIIAGDDLYGGTDRLLTQVVPRSGVVVVHVDT 118 (378)
T ss_pred HHHHHHHHHHHhCCCcE-EEECCHHHHHHHHH---H-Hh-----CCCCEEEEcCCCchHHHHHHHHHHHHcCcEEEEeCC
Confidence 56889999999998653 45567776553222 2 21 4788999988777655432 4568999999987
Q ss_pred CCCCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCccCCcEEE
Q 001989 710 DAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIGADVCH 788 (985)
Q Consensus 710 d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~g~Di~~ 788 (985)
+ |+++++++++ ++|++|++++| |.+|.+. |+++|+++||++|++++||+++..+ ....|..+|+|+++
T Consensus 119 ~-----d~~~le~~i~---~~tklv~le~psnptg~v~-dl~~I~~la~~~g~~vivD~a~~~~--~~~~~l~~g~Di~v 187 (378)
T TIGR01329 119 T-----DLDKVKAALG---PKTKLVLLESPTNPLQKIV-DIRKISEMAHAQNALVVVDNTMMSP--LLCNPLELGADIVY 187 (378)
T ss_pred C-----CHHHHHHhcC---cCceEEEEECCCCCCCeee-cHHHHHHHHHHcCCEEEEECCCccc--ccCChhhcCCcEEE
Confidence 3 8999999997 89999999999 5799998 8999999999999999999987433 23456678999999
Q ss_pred eCCcccccccCCCCCCceEEEEEcc-cccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHH
Q 001989 789 LNLHKTFCIPHGGGGPGMGPIGVKK-HLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKG 867 (985)
Q Consensus 789 ~s~hK~l~~p~g~GGPg~G~i~~~~-~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eG 867 (985)
+|+||+++.| ++..+|++++++ .+.+.+.... ...+...+ +. .+ ++...+.+.
T Consensus 188 ~S~tK~l~G~---~~~~~G~v~~~~~~~~~~~~~~~-------------~~~G~~~~-----~~---~a--~l~~~~l~t 241 (378)
T TIGR01329 188 HSATKFLAGH---SDVMAGVLAVKGEEIAKKVYFLQ-------------NSTGSGLA-----PF---DC--WLLLRGIKT 241 (378)
T ss_pred EecceeccCC---ccceeEEEEeCcHHHHHHHHHHH-------------HhcCCcCC-----HH---HH--HHHHccCCC
Confidence 9999998521 122378888864 3323221100 00011111 11 12 233445556
Q ss_pred HHHHHHHHHHHHHHHHHHhhc
Q 001989 868 LTEASKIAILNANYMAKRLEK 888 (985)
Q Consensus 868 l~~~~~~~~~~a~~l~~~L~~ 888 (985)
+..+.++..+++..+++.|++
T Consensus 242 l~~R~e~~~~na~~la~~L~~ 262 (378)
T TIGR01329 242 LAIRIEKQQENARAIAMFLST 262 (378)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 777788888999999999986
|
This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys. |
| >KOG1404 consensus Alanine-glyoxylate aminotransferase AGT2 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.8e-15 Score=161.85 Aligned_cols=337 Identities=17% Similarity=0.199 Sum_probs=204.0
Q ss_pred CHHHHHHHHHHHhccccCcccccccccccccCCCccccccccc-cccccccCCCCchhhhhhHHHHHHHHHHHHHHHhCC
Q 001989 569 TEHELLRYIHLLQSKELSLCHSMIPLGSCTMKLNATTEMMPVT-WPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGF 647 (985)
Q Consensus 569 se~e~~~~l~~l~~~~~~~~~~~~~lG~~t~~~~~~~~~~~~~-~~~f~~~~p~~p~e~~~G~~~~~~e~~~~la~l~G~ 647 (985)
=+++..|||+..+..- ...+|+|+++++++.+.+... |-.+..|. ..| +.++.+.|++.+--
T Consensus 45 yDe~G~ryLD~f~Gi~------tvslGHchP~v~~a~~kQl~~l~H~t~~~~-~~p----------i~~~Ae~L~s~~P~ 107 (442)
T KOG1404|consen 45 YDEEGRRYLDAFGGIV------TVSLGHCHPDVVAAAVKQLKKLYHTTSGYL-NPP----------IHDLAEALVSKLPG 107 (442)
T ss_pred EcCCCceeehhhCCeE------EEEcCCCChHHHHHHHHhhhhhEEeecccc-CCc----------HHHHHHHHHHhCCC
Confidence 3567789999887654 346899999999987777632 22232222 113 45777778777744
Q ss_pred Cc-cceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEE-cCCCCcccHHHHHHCCcEEEEEc-------------CCCC
Q 001989 648 DS-FSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCII-PVSAHGTNPATAAMCGMKIVSVG-------------TDAK 712 (985)
Q Consensus 648 ~~-~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv-~~~~Hg~~~~~a~~~G~~vv~v~-------------~d~~ 712 (985)
+- +.++.|||++|++.+++.+|.|. ..-+||. ..++||..+..+...|.....-+ .|+.
T Consensus 108 ~l~~vfF~nsGsEANelal~mar~Yt------~~~diIa~r~~YHG~t~~t~glt~~~~~k~~~~~~~~~~~~~~~Pdp~ 181 (442)
T KOG1404|consen 108 DLKVVFFVNSGSEANELALKMARLYT------GNLDIIARRNSYHGNTLYTLGLTGLSPWKQNFPGVASGVHHTMNPDPY 181 (442)
T ss_pred CceEEEEecCCchHHHHHHHHHHHhc------CCceEEEeeccccCCchhhcccccCCcccccCCCCCCcccccCCCCcc
Confidence 43 45788999999999999999883 2335554 77899987776543332221111 1110
Q ss_pred -----CC-----CC--HHHHHHHHHhcCC-CEEEEEEEcC-CCcccccc---CHHHHHHHHHHcCCEEEEEccccccccC
Q 001989 713 -----GN-----IN--IEELRKAAEANRD-NLSTLMVTYP-STHGVYEE---GIDEICKIIHDNGGQVYMDGANMNAQVG 775 (985)
Q Consensus 713 -----g~-----iD--~e~L~~~i~~~~~-~t~~Vvv~~p-n~~G~i~~---di~eI~~la~~~galliVD~a~~~~~~~ 775 (985)
+. .| .++++..|....+ .+++.+++.- ..-|++++ -+++..++|+++|.++|.|++| .+
T Consensus 182 r~~~~~~~~~e~~d~~a~~l~d~i~~~~~~~vAafiaEtIqGvgG~v~~p~GYlka~~~~v~k~Ggl~IaDEVq----tG 257 (442)
T KOG1404|consen 182 RGIFGGSNEEEASDRYAKELEDLILYDGPETVAAFIAETIQGVGGIVELPPGYLKAAYKVVRKRGGLFIADEVQ----TG 257 (442)
T ss_pred cccCCCCchhhhHHHHHHHHHHHHHhcCCCceeEEEeehhccCCccccCCchHHHHHHHHHHHcCCEEEehhhh----hc
Confidence 11 00 2344445443223 3556666543 34577763 3899999999999999999876 45
Q ss_pred CCCCCc-cC-------CcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcch
Q 001989 776 LTSPGY-IG-------ADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPW 847 (985)
Q Consensus 776 l~~pg~-~g-------~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~ 847 (985)
+++.|. || +||++. .|.++ .| --+|.++..+++..-+..... ..+ ++.
T Consensus 258 fGRtG~~wgfe~h~v~PDIvTm--AKgiG----nG-~Pl~AVvtt~EIa~v~~~~~~--------------~fn---Tyg 313 (442)
T KOG1404|consen 258 FGRTGHMWGFESHGVVPDIVTM--AKGIG----NG-FPLGAVVTTPEIADVLNQKSS--------------HFN---TYG 313 (442)
T ss_pred cccccccccccccCCCccHHHH--Hhhcc----CC-CcceeeecCHHHHHHHHhccc--------------ccc---ccC
Confidence 666653 22 577754 37663 34 445566667776654432210 011 244
Q ss_pred hhhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc---cCCeeecCCCCceeeEE-EEEec-CccccCCCCHHH
Q 001989 848 GSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK---HYPILFRGVNGTVAHEF-IVDLR-GLKNTAGIEPED 922 (985)
Q Consensus 848 g~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~---g~~l~~~~~~~~~~~~~-iv~~~-~~~~~~g~~~~~ 922 (985)
|++.+++++.+.|..+.+|.+.+ +..+...||.++|.+ ..+++-.-.....+..+ +++.+ ..+.........
T Consensus 314 gnP~a~avg~aVL~Vikee~LqE---~aa~vG~yl~~~l~~l~d~h~iIGdVRG~GLm~GvE~V~dk~~~~pp~~~~~~~ 390 (442)
T KOG1404|consen 314 GNPVACAVGLAVLKVIKEENLQE---NAAEVGSYLLEKLAALKDKHPIIGDVRGRGLMLGVELVSDKSEPKPPATAEGAV 390 (442)
T ss_pred CCchhHHHHHHHHHHHHHHhHHH---HHHHHHHHHHHHHHHHhhcCCceeecccceeEEEEEEecccCCCCCcchHHHHH
Confidence 56777788888899888776554 666788999998865 33442111111122111 12222 000011112456
Q ss_pred HHHHHHHCCCccCCCCCCCCCEEEEeccCCCCHHHHHH
Q 001989 923 VAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKSWTGI 960 (985)
Q Consensus 923 v~~~L~~~Gi~~~~~~~p~~~~lris~t~~~t~eeId~ 960 (985)
+.+.+.+.|+.++.-... .+.+||+|+...|+||||.
T Consensus 391 i~~~cke~Gvlvg~g~i~-G~vfriaPPlciT~edi~f 427 (442)
T KOG1404|consen 391 IGEQCKELGVLVGKGGIH-GNVFRIAPPLCITKEDIDF 427 (442)
T ss_pred HHHHHHHhCeeeeccccc-ceEEEecCCeeccHHHHHH
Confidence 778889999998632211 3689999999999999976
|
|
| >PRK07810 O-succinylhomoserine sulfhydrylase; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.1e-14 Score=164.75 Aligned_cols=213 Identities=19% Similarity=0.191 Sum_probs=156.4
Q ss_pred HHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCch---
Q 001989 213 LLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDLK--- 289 (985)
Q Consensus 213 i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~~--- 289 (985)
..++++.+|++.|.+ ++.++.+|++++.++++++ +. +||+||+++..|+.....+...++..|++++++|.+
T Consensus 72 ~~~le~~lA~l~g~~--~al~~~sG~~Ai~~~l~al-l~--~Gd~Vl~~~~~~~~t~~~~~~~~~~~G~~v~~vd~~d~~ 146 (403)
T PRK07810 72 VSMFEERLRLIEGAE--ACFATASGMSAVFTALGAL-LG--AGDRLVAARSLFGSCFVVCNEILPRWGVETVFVDGEDLS 146 (403)
T ss_pred HHHHHHHHHHHhCCC--cEEEECChHHHHHHHHHHH-hC--CCCEEEEccCCcchHHHHHHHHHHHcCcEEEEECCCCHH
Confidence 345789999999977 4778899998888777665 23 899999999999877777766667789999999764
Q ss_pred hhhc-cCCCEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCCCCCcccceEEEecC-ccccccCCCC
Q 001989 290 DIDY-KSGDVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKPPGELGADIVVGSA-QRFGVPMGYG 366 (985)
Q Consensus 290 ~l~~-l~~~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~~~~~~GaDi~v~s~-k~lg~P~~~G 366 (985)
++++ ++++|++|++.+| |++|.+.|+++|+++||++|++++|| +.++.+....|.++|+||++.|+ |.+++ .|
T Consensus 147 ~l~~ai~~~tklV~~esp~Nptg~v~dl~~I~~la~~~g~~vivD-~a~a~~~~~~~~~~gaDivv~S~tK~l~g---~g 222 (403)
T PRK07810 147 QWEEALSVPTQAVFFETPSNPMQSLVDIAAVSELAHAAGAKVVLD-NVFATPLLQRGLPLGADVVVYSGTKHIDG---QG 222 (403)
T ss_pred HHHHhcCcCceEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEE-CCCCccccCChhhcCCcEEEccCCceecC---Cc
Confidence 4666 7889999999998 78999999999999999999999994 45666666667789999999998 77753 22
Q ss_pred CCcEEEEEEchhhHhc-CCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcchHHH
Q 001989 367 GPHAAFLATSQEYKRM-MPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKT 445 (985)
Q Consensus 367 GP~~G~l~~~~~~~~~-lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~ 445 (985)
..-+|+++++++.+.. +- ..++..|. | .++. .|+ +...+-+-+..
T Consensus 223 ~~~gG~v~~~~~~~~~~l~-------------------------~~~~~~g~---~-~s~~---~a~--l~l~~L~tl~~ 268 (403)
T PRK07810 223 RVLGGAILGDREYIDGPVQ-------------------------KLMRHTGP---A-LSAF---NAW--VLLKGLETLAL 268 (403)
T ss_pred CceeEEEEeChHHHHHHHH-------------------------HHHHHhCC---C-CCHH---HHH--HHHhccCcHHH
Confidence 2225788887765431 10 00011111 0 0111 222 24555667788
Q ss_pred HHHHHHHHHHHHHHHHhcCCCeE
Q 001989 446 IAQRVHGLAGTFALGLKKLGTVE 468 (985)
Q Consensus 446 i~~~~~~~a~~l~~~L~~~g~~~ 468 (985)
+.++..+++.++.+.|++...++
T Consensus 269 R~~~~~~~a~~~a~~L~~~p~v~ 291 (403)
T PRK07810 269 RVRHSNASALRIAEFLEGHPAVR 291 (403)
T ss_pred HHHHHHHHHHHHHHHHhcCCCcc
Confidence 88888999999999999875454
|
|
| >COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.64 E-value=5.7e-14 Score=158.29 Aligned_cols=214 Identities=21% Similarity=0.200 Sum_probs=158.7
Q ss_pred HHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCchh--
Q 001989 213 LLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDLKD-- 290 (985)
Q Consensus 213 i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~~~-- 290 (985)
...+|+.+|+|-|.+. +..+++|.+++.++.+++. ++||+||+++..+......+....+.+|+++.++|..+
T Consensus 65 ~~~lE~~~a~LEg~~~--~~afsSGmaAI~~~~l~ll---~~GD~vl~~~~~YG~t~~~~~~~l~~~gi~~~~~d~~~~~ 139 (396)
T COG0626 65 RDALEEALAELEGGED--AFAFSSGMAAISTALLALL---KAGDHVLLPDDLYGGTYRLFEKILQKFGVEVTFVDPGDDE 139 (396)
T ss_pred HHHHHHHHHHhhCCCc--EEEecCcHHHHHHHHHHhc---CCCCEEEecCCccchHHHHHHHHHHhcCeEEEEECCCChH
Confidence 4457789999999876 7788999999888777652 37999999999999999988888888999999998633
Q ss_pred -hhc-cC-CCEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCCCCCcccceEEEecC-ccccccCCC
Q 001989 291 -IDY-KS-GDVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKPPGELGADIVVGSA-QRFGVPMGY 365 (985)
Q Consensus 291 -l~~-l~-~~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~~~~~~GaDi~v~s~-k~lg~P~~~ 365 (985)
+++ +. ++|++|++..| |++-.+.||++|+++||++|++++| ++.++-+++..|-++||||++.|+ |.+++.-.
T Consensus 140 ~~~~~~~~~~tk~v~lEtPsNP~l~v~DI~~i~~~A~~~g~~vvV-DNTfatP~~q~PL~~GaDIVvhSaTKyl~GHsD- 217 (396)
T COG0626 140 ALEAAIKEPNTKLVFLETPSNPLLEVPDIPAIARLAKAYGALVVV-DNTFATPVLQRPLELGADIVVHSATKYLGGHSD- 217 (396)
T ss_pred HHHHHhcccCceEEEEeCCCCcccccccHHHHHHHHHhcCCEEEE-ECCcccccccChhhcCCCEEEEeccccccCCcc-
Confidence 333 44 69999999998 8999999999999999999988888 578888899999999999999998 88865321
Q ss_pred CCCcEEEEEEchh-hHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcchHH
Q 001989 366 GGPHAAFLATSQE-YKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLK 444 (985)
Q Consensus 366 GGP~~G~l~~~~~-~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~ 444 (985)
--+|.+..+++ +.+++ ....++.-|+ +. ++. - .|+.+-|.+-|.
T Consensus 218 --vl~G~v~~~~~~~~~~~------------------------~~~~~~~~G~--~l--~p~---d--A~l~lRGlkTL~ 262 (396)
T COG0626 218 --VLGGVVLTPNEELYELL------------------------FFAQRANTGA--VL--SPF---D--AWLLLRGLRTLA 262 (396)
T ss_pred --eeeeEEecChHHHHHHH------------------------HHHHHhhcCC--CC--CHH---H--HHHHHhccchHH
Confidence 12244443433 22221 0001111111 00 111 1 155666777777
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCeE
Q 001989 445 TIAQRVHGLAGTFALGLKKLGTVE 468 (985)
Q Consensus 445 ~i~~~~~~~a~~l~~~L~~~g~~~ 468 (985)
-+.+++.++|..+++.|++...++
T Consensus 263 ~Rm~~~~~nA~~IA~~L~~~p~V~ 286 (396)
T COG0626 263 LRMERHNENALKIAEFLADHPKVK 286 (396)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCeE
Confidence 788888999999999999875455
|
|
| >PRK09147 succinyldiaminopimelate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=4.6e-14 Score=163.87 Aligned_cols=294 Identities=13% Similarity=0.082 Sum_probs=180.6
Q ss_pred hhHHHHHHHHHHHHHHHhCCC---cc-ceecCcHH-HHHHHHHHHHHHHHHhcCCCC---CCEEEEcCCCCcccHHHHHH
Q 001989 628 QGYQEMFNNLGEWLCTITGFD---SF-SLQPNAGA-AGEYAGLMVIRAYHKARGDHH---RNVCIIPVSAHGTNPATAAM 699 (985)
Q Consensus 628 ~G~~~~~~e~~~~la~l~G~~---~~-~~~~~sGa-~a~~a~l~air~~~~~~g~~~---~~~IIv~~~~Hg~~~~~a~~ 699 (985)
+|..++.+.+.+++.+.+|.+ .. .+..+.|+ ++...+ ++.+. .+ +++|+++++.+..+...++.
T Consensus 65 ~G~~~lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~---~~~l~-----~~~~~gd~vlv~~P~y~~~~~~~~~ 136 (396)
T PRK09147 65 AGLPALREAIAAWLERRYGLPALDPATQVLPVNGSREALFAF---AQTVI-----DRDGPGPLVVCPNPFYQIYEGAALL 136 (396)
T ss_pred CCCHHHHHHHHHHHHHHhCCCcCCccceEEECCChHHHHHHH---HHHHc-----CCCCCCCEEEEcCCCccchHHHHHh
Confidence 566666666777777776854 33 55554454 444333 33321 24 78899999877777777888
Q ss_pred CCcEEEEEcCCCC--CCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccc--cCHHHHHHHHHHcCCEEEEEccccccc-
Q 001989 700 CGMKIVSVGTDAK--GNINIEELRKAAEANRDNLSTLMVTYP-STHGVYE--EGIDEICKIIHDNGGQVYMDGANMNAQ- 773 (985)
Q Consensus 700 ~G~~vv~v~~d~~--g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~--~di~eI~~la~~~galliVD~a~~~~~- 773 (985)
.|++++.||++++ +.+|+++|++.+. +++++|++++| |++|.+. ..+++|.++|+++++++++|.++..-.
T Consensus 137 ~g~~~~~vp~~~~~~~~~d~~~l~~~~~---~~~k~i~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~ 213 (396)
T PRK09147 137 AGAEPYFLNCDPANNFAPDFDAVPAEVW---ARTQLLFVCSPGNPTGAVLPLDDWKKLFALSDRYGFVIASDECYSEIYF 213 (396)
T ss_pred cCCEEEEeccCccccCccCHHHHHHHHh---hccEEEEEcCCCCCcCccCCHHHHHHHHHHHHHcCeEEEeecccccccc
Confidence 9999999998643 5799999998886 68899999999 5799885 258888999999999999999874211
Q ss_pred cCC-CCC------CccCCc-----EEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCC
Q 001989 774 VGL-TSP------GYIGAD-----VCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGT 841 (985)
Q Consensus 774 ~~l-~~p------g~~g~D-----i~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~ 841 (985)
..- ..+ ...+.| +++.|+.|.|++| |.++|++++++++.+.+.... .....+
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~~----GlRiG~~~~~~~l~~~~~~~~------------~~~~~~ 277 (396)
T PRK09147 214 DEAAPPLGLLEAAAELGRDDFKRLVVFHSLSKRSNVP----GLRSGFVAGDAALLKKFLLYR------------TYHGCA 277 (396)
T ss_pred CCCCCCchhhhhccccCccccccEEEEeccccccCCc----cceeeeecCCHHHHHHHHHHh------------hhcccC
Confidence 110 000 011222 7778888887554 788999998876654432100 000011
Q ss_pred CCCcchhhhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhccCCeeecCCCCceeeEEEEEecCccccCCCCHH
Q 001989 842 IAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPE 921 (985)
Q Consensus 842 i~s~~~g~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~ 921 (985)
+++ ..+. ++.+.+ ...+-+++..+...++.+.+.+.|++.+.+. .+.+..+ +.++++ .+..
T Consensus 278 ~~~--~~q~----a~~~~~--~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~--~p~~g~f--~~~~~~-------~~~~ 338 (396)
T PRK09147 278 MPP--AVQA----ASIAAW--NDEAHVRENRALYREKFDAVTPILAPVLDVQ--LPDAGFY--LWAKVP-------GDDT 338 (396)
T ss_pred CCH--HHHH----HHHHHh--cchhHHHHHHHHHHHHHHHHHHHHHHhcCCC--CCCeeEE--EEEECC-------CCHH
Confidence 111 1111 111111 1223344555556677777888887643332 1222222 345553 2467
Q ss_pred HHHHHHH-HCCCccCC-CCC--------CCCCEEEEeccCCCCHHHHHHHHccCChhHHH
Q 001989 922 DVAKRLM-DYGFHGPT-MSW--------PVPGTLMIEPTESESKSWTGIVMLSSPSEKKL 971 (985)
Q Consensus 922 ~v~~~L~-~~Gi~~~~-~~~--------p~~~~lris~t~~~t~eeId~~~~~~~l~~~~ 971 (985)
+++++|. ++|+.+.. ..| +..+++||++.. +.+++++ .++.|++.+
T Consensus 339 ~~~~~ll~~~gv~v~pg~~f~~~~~~~~~~~~~iRi~~~~--~~~~l~~--~l~rl~~~~ 394 (396)
T PRK09147 339 EFARRLYADYNVTVLPGSYLAREAHGVNPGAGRVRIALVA--PLAECVE--AAERIVDFC 394 (396)
T ss_pred HHHHHHHHhCCEEEeCCccccccccCCCCCCCeEEEEecC--CHHHHHH--HHHHHHHHh
Confidence 7888875 57987643 111 124789999874 5777877 556666544
|
|
| >TIGR03576 pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 family | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.3e-14 Score=164.60 Aligned_cols=280 Identities=17% Similarity=0.140 Sum_probs=173.7
Q ss_pred hHHHHHHHHHHHHHHHhCCCcc-ceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEc---CCCCcccHHHHHHCCcEE
Q 001989 629 GYQEMFNNLGEWLCTITGFDSF-SLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIP---VSAHGTNPATAAMCGMKI 704 (985)
Q Consensus 629 G~~~~~~e~~~~la~l~G~~~~-~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~---~~~Hg~~~~~a~~~G~~v 704 (985)
|..+.+.++++++++++|.+.. .+.+++|.+++.+++.++. +++++|+++ .+.|.++...+++.|+++
T Consensus 51 g~~~~~~~Le~~lA~~~g~~~e~ilv~~gg~~a~~~~~~al~--------~~gd~Vli~~~d~p~~~s~~~~~~l~ga~~ 122 (346)
T TIGR03576 51 GPAIFEEKVQELGREHLGGPEEKILVFNRTSSAILATILALE--------PPGRKVVHYLPEKPAHPSIPRSCKLAGAEY 122 (346)
T ss_pred CCHHHHHHHHHHHHHHcCCCcceEEEECCHHHHHHHHHHHhC--------CCCCEEEECCCCCCCchhHHHHHHHcCCEE
Confidence 4446788999999999999543 4556778887765555442 478889874 357777777788899886
Q ss_pred EEEcCCCCCCCCHHHHHHHHHhcCCCEEEEEEEcCCCcccc---ccCHHHHHHHHHHcCCEEEEEccccccccCC-C--C
Q 001989 705 VSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPSTHGVY---EEGIDEICKIIHDNGGQVYMDGANMNAQVGL-T--S 778 (985)
Q Consensus 705 v~v~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~pn~~G~i---~~di~eI~~la~~~galliVD~a~~~~~~~l-~--~ 778 (985)
+. + .|+++++. . +++++|+++..+.+|.+ . |+++|+++|+++|++++||.||..+..+. . .
T Consensus 123 ~~--~-----~~l~~l~~--~---~~~~lIiitg~s~~G~v~~~~-~L~~i~~la~~~~~~livDEAy~~~~~~~~~~~~ 189 (346)
T TIGR03576 123 FE--S-----DELSELKK--I---DGTSLVVITGSTMDLKVVSEE-DLKRVIKQAKSKEAIVLVDDASGARVRRLYGQPP 189 (346)
T ss_pred ec--c-----CCHHHHhh--C---cCceEEEEECCCCCCcccCHH-HHHHHHHHHHHcCCEEEEECCccccccccCCCCC
Confidence 43 2 25666432 1 46788888766777877 4 79999999999999999999986432211 1 1
Q ss_pred CCccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHH
Q 001989 779 PGYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYT 858 (985)
Q Consensus 779 pg~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a 858 (985)
...+++|+++.+++|++ +|+.+|++++++++.+.+.... + .. ..+. ++....++.+
T Consensus 190 ~~~~~~divv~s~SKal------aG~r~G~v~~~~~li~~l~~~~-----------~--~~-~~s~----~~~~~~aa~~ 245 (346)
T TIGR03576 190 ALDLGADLVVTSTDKLM------DGPRGGLLAGRKELVDKIKSVG-----------E--QF-GLEA----QAPLLAAVVR 245 (346)
T ss_pred HHHcCCcEEEeccchhc------cccceEEEEeCHHHHHHHHHhh-----------c--Cc-ccCc----cHHHHHHHHH
Confidence 12346799999999965 4788999999987766553210 0 00 1111 1122333344
Q ss_pred HHHHhcHHHHHHHHHHHHHHHHHHHHHhhccCCeeecCCCCceeeEEEEEecCccccCCCCH-HHHHHHHHHCCCccCCC
Q 001989 859 YIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEP-EDVAKRLMDYGFHGPTM 937 (985)
Q Consensus 859 ~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~-~~v~~~L~~~Gi~~~~~ 937 (985)
+|..+.. ....+...++.+++.+.+++ +++. +.+ .. + +.++++ +.+. +.+.+.|.++||.+...
T Consensus 246 aL~~~~~---~~~~~~l~~r~~~~~~~l~~-~~~~-~~~-~~-f--~~~~~~------~~~~~~~~~~ll~~~gV~v~~~ 310 (346)
T TIGR03576 246 ALEEFEL---SRIRDAFKRKEEVYLRLFDK-LNVE-RTP-TG-F--VIKGVE------EEKLIEIGLDLLRNYGIITITA 310 (346)
T ss_pred HHhhccH---HHHHHHHHHHHHHHHHHHHh-CCCC-cCC-Ce-E--EEEeCC------CCCHHHHHHHHHHhCCEEEeCC
Confidence 4544322 23334455666666666653 4432 222 11 2 334543 1223 44555566789987653
Q ss_pred -CCC-CCCEEEEeccCCC-CHHHHHHHHccCChhHH
Q 001989 938 -SWP-VPGTLMIEPTESE-SKSWTGIVMLSSPSEKK 970 (985)
Q Consensus 938 -~~p-~~~~lris~t~~~-t~eeId~~~~~~~l~~~ 970 (985)
.|+ .++++|||+.... ++.|+++ ++++|++.
T Consensus 311 ~~f~~~~~~vRis~~~~~~~~~~~~~--~~~al~~~ 344 (346)
T TIGR03576 311 VGMPGASKTLRFDLAAKDAERIGDDY--LVEAVKDS 344 (346)
T ss_pred cccCCCCCeEEEEEecChHHhcCHHH--HHHHHHhc
Confidence 333 3689999986432 3337888 66666653
|
Members of this archaeal protein family are pyridoxal phosphate enzymes of unknown function. Sequence similarity to SelA, a bacterial enzyme of selenocysteine biosynthesis, has led to some members being misannotated as functionally equivalent, but selenocysteine is made on tRNA in Archaea by a two-step process that does not involve a SelA homolog. |
| >PRK08861 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=8e-14 Score=160.04 Aligned_cols=212 Identities=20% Similarity=0.201 Sum_probs=156.0
Q ss_pred HHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc---hh
Q 001989 214 LNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL---KD 290 (985)
Q Consensus 214 ~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~---~~ 290 (985)
.++++.+|++.|.+ ++.++.|+++++.++++++ . ++||+|+++...|+.....+....+..|++++.++. ++
T Consensus 56 ~~Le~~lA~leg~e--~ivvt~gg~~Ai~~~l~al-l--~~Gd~Il~~~~~y~~~~~~~~~~~~~~gi~v~~vd~~d~e~ 130 (388)
T PRK08861 56 GLLEQTLSELESGK--GAVVTNCGTSALNLWVSAL-L--GPDDLIVAPHDCYGGTYRLFNTRANKGDFKVQFVDQSDAAA 130 (388)
T ss_pred HHHHHHHHHHhCCC--eEEEECCHHHHHHHHHHHH-c--CCCCEEEEcCCchHHHHHHHHHHHhcCCeEEEEECCCCHHH
Confidence 34678999999964 5888999999888887765 3 389999999999998887776655567899988864 45
Q ss_pred hhc-cCCCEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCCCCCcccceEEEecC-ccccccCCCCC
Q 001989 291 IDY-KSGDVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKPPGELGADIVVGSA-QRFGVPMGYGG 367 (985)
Q Consensus 291 l~~-l~~~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~~~~~~GaDi~v~s~-k~lg~P~~~GG 367 (985)
+++ ++++|++|++.+| |++|.+.|+++|+++||++|++++|| +.++.+....|-++|||++++|+ |++++|..
T Consensus 131 l~~~i~~~tklV~lesP~NPtG~v~dl~~I~~la~~~gi~vIvD-ea~~~~~~~~pl~~GaDivv~S~tK~l~G~~d--- 206 (388)
T PRK08861 131 LDAALAKKPKLILLETPSNPLVRVVDIAELCQKAKAVGALVAVD-NTFLTPVLQKPLELGADFVIHSTTKYINGHSD--- 206 (388)
T ss_pred HHHhcCcCCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEE-CCccccccCCCcccCCCEEEeecceeccCCCc---
Confidence 666 7789999999998 78999999999999999999999994 45566666677889999999999 77764421
Q ss_pred CcEEEEEEch-hhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcchHHHH
Q 001989 368 PHAAFLATSQ-EYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTI 446 (985)
Q Consensus 368 P~~G~l~~~~-~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i 446 (985)
--.|++.+++ ++.+++. ..|..-|. . .++. ..|+...|-+-|.-+
T Consensus 207 ~~gG~i~~~~~~~~~~~~-------------------------~~~~~~G~--~--~~p~-----~a~l~~rgl~Tl~lR 252 (388)
T PRK08861 207 VIGGVLITKTKEHAEELA-------------------------WWGNCIGA--T--GTPF-----DSYMTLRGIRTLGAR 252 (388)
T ss_pred ceeEEEEecHHHHHHHHH-------------------------HHHhccCC--C--CChH-----HHHHHHhcCCCHHHH
Confidence 1146666654 3332220 00111110 0 0122 124567777778888
Q ss_pred HHHHHHHHHHHHHHHhcCCCeE
Q 001989 447 AQRVHGLAGTFALGLKKLGTVE 468 (985)
Q Consensus 447 ~~~~~~~a~~l~~~L~~~g~~~ 468 (985)
.++..++|..+++.|++...++
T Consensus 253 ~~~~~~~a~~~a~~L~~~p~v~ 274 (388)
T PRK08861 253 MRVHEESAQQILAYLQTQSLVG 274 (388)
T ss_pred HHHHHHHHHHHHHHHHhCCCee
Confidence 8999999999999999885454
|
|
| >PRK08249 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=7.2e-14 Score=161.46 Aligned_cols=214 Identities=19% Similarity=0.206 Sum_probs=153.7
Q ss_pred HHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc---
Q 001989 212 SLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL--- 288 (985)
Q Consensus 212 ~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~--- 288 (985)
...++++.+|++.|.+. +.++.+|++++.+++.++ . ++||+||++...|+++...++.+++..|+++++++.
T Consensus 65 ~~~~le~~lA~l~g~~~--~i~~ssG~~Ai~~~l~al-l--~~GD~Vi~~~~~y~~~~~~~~~~~~~~Gi~v~~vd~~d~ 139 (398)
T PRK08249 65 TVQAFEEKVRILEGAEA--ATAFSTGMAAISNTLYTF-L--KPGDRVVSIKDTYGGTNKIFTEFLPRMGVDVTLCETGDH 139 (398)
T ss_pred HHHHHHHHHHHHhCCCe--EEEeCChHHHHHHHHHHh-c--CCCCEEEEcCCchHHHHHHHHHHHhhCCeEEEEcCCCCH
Confidence 34568899999999765 567788887777666554 2 389999999999999888887666778999998765
Q ss_pred hhhhc-cCCCEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCCCCCcccceEEEecC-ccccccCCC
Q 001989 289 KDIDY-KSGDVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKPPGELGADIVVGSA-QRFGVPMGY 365 (985)
Q Consensus 289 ~~l~~-l~~~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~~~~~~GaDi~v~s~-k~lg~P~~~ 365 (985)
+++++ ++++|++|++.+| |++|.+.|+++|+++||++|++++|| +.++.+....|..+|+|+++.|. |.++++
T Consensus 140 e~l~~~i~~~tklV~ie~p~NPtg~v~dl~~I~~la~~~gi~livD-~t~a~~~~~~~l~~~~Divv~S~sK~l~g~--- 215 (398)
T PRK08249 140 EQIEAEIAKGCDLLYLETPTNPTLKIVDIERLAAAAKKVGALVVVD-NTFATPINQNPLALGADLVIHSATKFLSGH--- 215 (398)
T ss_pred HHHHHhcCCCCeEEEEECCCCCCCccCCHHHHHHHHHHcCCEEEEE-CCcCccccCCchhhCCCEEeccCceecCCC---
Confidence 45666 8889999999988 78999999999999999999999995 34454444456678999999998 777542
Q ss_pred CCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcchHHH
Q 001989 366 GGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKT 445 (985)
Q Consensus 366 GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~ 445 (985)
|...+|++..++++.+++.. .|+..+ .+.++. .+ |+...+.+-+..
T Consensus 216 ~~~~gG~vv~~~~l~~~l~~-------------------------~~~~~g----~~~s~~---~a--~l~l~~l~tL~~ 261 (398)
T PRK08249 216 ADALGGVVCGSKELMEQVYH-------------------------YREING----ATMDPM---SA--YLILRGMKTLKL 261 (398)
T ss_pred CCceEEEEECCHHHHHHHHH-------------------------HHHhcC----CCCCHH---HH--HHHHhCcchHHH
Confidence 21124777777666654410 001111 011122 11 123445566777
Q ss_pred HHHHHHHHHHHHHHHHhcCCCeE
Q 001989 446 IAQRVHGLAGTFALGLKKLGTVE 468 (985)
Q Consensus 446 i~~~~~~~a~~l~~~L~~~g~~~ 468 (985)
..++..+++..+.+.|++...++
T Consensus 262 R~~~~~~na~~la~~L~~~p~v~ 284 (398)
T PRK08249 262 RVRQQQESAMALAKYLQTHPKVE 284 (398)
T ss_pred HHHHHHHHHHHHHHHHHcCCCee
Confidence 77888899999999999875454
|
|
| >PRK08861 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.5e-14 Score=166.10 Aligned_cols=208 Identities=18% Similarity=0.176 Sum_probs=147.0
Q ss_pred HHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHH----HHHCCcEEEEEcC
Q 001989 634 FNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPAT----AAMCGMKIVSVGT 709 (985)
Q Consensus 634 ~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~----a~~~G~~vv~v~~ 709 (985)
..++++.++++.|.+.+ +..+||++|+..+++++. +++++|++++..|+..... ....|++++.++.
T Consensus 55 ~~~Le~~lA~leg~e~i-vvt~gg~~Ai~~~l~all--------~~Gd~Il~~~~~y~~~~~~~~~~~~~~gi~v~~vd~ 125 (388)
T PRK08861 55 RGLLEQTLSELESGKGA-VVTNCGTSALNLWVSALL--------GPDDLIVAPHDCYGGTYRLFNTRANKGDFKVQFVDQ 125 (388)
T ss_pred HHHHHHHHHHHhCCCeE-EEECCHHHHHHHHHHHHc--------CCCCEEEEcCCchHHHHHHHHHHHhcCCeEEEEECC
Confidence 45788999999997543 455677777654444331 3788999988767643322 2345788888864
Q ss_pred CCCCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCccCCcEEE
Q 001989 710 DAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIGADVCH 788 (985)
Q Consensus 710 d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~g~Di~~ 788 (985)
.|+++++++++ ++|++|++++| |++|.+. |+++|+++|+++|++++||.++..+ .+..|.++|+|+++
T Consensus 126 -----~d~e~l~~~i~---~~tklV~lesP~NPtG~v~-dl~~I~~la~~~gi~vIvDea~~~~--~~~~pl~~GaDivv 194 (388)
T PRK08861 126 -----SDAAALDAALA---KKPKLILLETPSNPLVRVV-DIAELCQKAKAVGALVAVDNTFLTP--VLQKPLELGADFVI 194 (388)
T ss_pred -----CCHHHHHHhcC---cCCeEEEEECCCCCCCccc-CHHHHHHHHHHcCCEEEEECCcccc--ccCCCcccCCCEEE
Confidence 48999999997 78999999999 5799998 8999999999999999999998532 24567788999999
Q ss_pred eCCcccccccCCCCCCc---eEEEEEcc-cccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhc
Q 001989 789 LNLHKTFCIPHGGGGPG---MGPIGVKK-HLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMG 864 (985)
Q Consensus 789 ~s~hK~l~~p~g~GGPg---~G~i~~~~-~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg 864 (985)
.|+||+++ ||+ +|++++++ ++.+.+... ...++...+ + ..+| +...|
T Consensus 195 ~S~tK~l~------G~~d~~gG~i~~~~~~~~~~~~~~-------------~~~~G~~~~-p-------~~a~--l~~rg 245 (388)
T PRK08861 195 HSTTKYIN------GHSDVIGGVLITKTKEHAEELAWW-------------GNCIGATGT-P-------FDSY--MTLRG 245 (388)
T ss_pred eecceecc------CCCcceeEEEEecHHHHHHHHHHH-------------HhccCCCCC-h-------HHHH--HHHhc
Confidence 99999984 442 57777653 333322100 001122221 1 1234 44455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccC
Q 001989 865 SKGLTEASKIAILNANYMAKRLEKHY 890 (985)
Q Consensus 865 ~eGl~~~~~~~~~~a~~l~~~L~~g~ 890 (985)
-+.+.-+++++.+++..+++.|++..
T Consensus 246 l~Tl~lR~~~~~~~a~~~a~~L~~~p 271 (388)
T PRK08861 246 IRTLGARMRVHEESAQQILAYLQTQS 271 (388)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhCC
Confidence 56677788999999999999998743
|
|
| >TIGR02379 ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase | Back alignment and domain information |
|---|
Probab=99.64 E-value=4.5e-14 Score=162.13 Aligned_cols=308 Identities=15% Similarity=0.089 Sum_probs=182.5
Q ss_pred HHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcCCCC-
Q 001989 634 FNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAK- 712 (985)
Q Consensus 634 ~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~d~~- 712 (985)
..++++++++++|.+.. +.+++|++|...++.++ +.+++|+||+++..|......+...|++++.++++++
T Consensus 33 ~~~~e~~la~~~g~~~~-v~~~sgt~aL~~~l~al-------~~~pGd~Viv~~~t~~~~~~~~~~~G~~~v~vd~d~~~ 104 (376)
T TIGR02379 33 SRRCETWLENRTGTKKA-LLTPSCTAALEMAALLL-------DIQPGDEVIMPSYTFVSTANAFVLRGAKIVFVDIRPDT 104 (376)
T ss_pred HHHHHHHHHHHhCCCeE-EEeCCHHHHHHHHHHHc-------CCCCcCEEEECCCCcHHHHHHHHHcCCEEEEEecCCCc
Confidence 45788899999988764 55667777654333322 1247899999998776666667788999999999876
Q ss_pred CCCCHHHHHHHHHhcCCCEEEEEEEcCCCccccccCHHHHHHHHHHcCCEEEEEccccccccCC-CCCCccCCcEEEeCC
Q 001989 713 GNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGL-TSPGYIGADVCHLNL 791 (985)
Q Consensus 713 g~iD~e~L~~~i~~~~~~t~~Vvv~~pn~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l-~~pg~~g~Di~~~s~ 791 (985)
+.+|+++++++++ ++|++|+.++| +|... |+++|.++|+++|+++++|++|..+..-- ...+.+ .|+.++|+
T Consensus 105 ~~~d~~~le~~i~---~~tk~Iip~~~--~G~~~-d~~~I~~la~~~~i~vIeDaa~~~g~~~~~~~~g~~-~~~~~fSf 177 (376)
T TIGR02379 105 MNIDETLIESAIT---HRTKAIVPVHY--AGVAC-DMDTIMALANKHQLFVIEDAAQGVMSTYKGRALGSI-GHLGTFSF 177 (376)
T ss_pred CCCCHHHHHHhcC---cCceEEEEeCC--CCCcc-CHHHHHHHHHHCCCEEEEECccccCCccCCcccCCC-CCEEEEeC
Confidence 6899999999997 78999987765 58777 89999999999999999999986432111 122332 48889998
Q ss_pred cccccccCCCCCCceEEEEEc-ccccCcCCC-CccccCCCCCCC-CC-CCCCCCCCCcchhhhHHHHHHHHHHHHhcHHH
Q 001989 792 HKTFCIPHGGGGPGMGPIGVK-KHLAPFLPS-HPVVSTGGIPAP-EK-SQPLGTIAAAPWGSALILPISYTYIAMMGSKG 867 (985)
Q Consensus 792 hK~l~~p~g~GGPg~G~i~~~-~~l~~~lp~-~~~g~~~~~~~~-~~-~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eG 867 (985)
|++ +.+..||. +|+++++ +++.+.+.. +..|...+...+ .. ......+..++--....++...+.|. .
T Consensus 178 ~~~--K~l~~g~~-gG~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~n~~~~~~~Aa~g~~qL~-----~ 249 (376)
T TIGR02379 178 HET--KNYTSGGE-GGALLINDQAFIERAEIIREKGTNRSQFFRGEVDKYTWRDIGSSYLPSELQAAYLWAQLE-----Q 249 (376)
T ss_pred CCC--CcCcccCC-ceEEEECCHHHHHHHHHHHHhCCCCccccccCCCcceeeeecccCCccHHHHHHHHHHHH-----H
Confidence 874 33333434 4555555 555443321 011111000000 00 00000010000001111122222232 3
Q ss_pred HHHHHHHHHHHHHHHHHHhhccC--C-eeecC-CC--CceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCC---
Q 001989 868 LTEASKIAILNANYMAKRLEKHY--P-ILFRG-VN--GTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMS--- 938 (985)
Q Consensus 868 l~~~~~~~~~~a~~l~~~L~~g~--~-l~~~~-~~--~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~--- 938 (985)
+.+..++..+++++..++|.+.. . +..+. +. ....+.+.+.++ .+.+.+++.+.|.++||.+....
T Consensus 250 l~~~~~~r~~~~~~y~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-----~~~~r~~l~~~L~~~gI~~~~~~~p~ 324 (376)
T TIGR02379 250 ADRINQDRLATWQLYQDALKPLEEKGIIELPSIPNGCQHNAHMFYIKLK-----DEDDRNELIKYLKEQEIMAVFHYVPL 324 (376)
T ss_pred hHHHHHHHHHHHHHHHHHhccCCcCCeeeCCCCCCCCeeeeEEEEEEEC-----CcCCHHHHHHHHHHCCCCccccCcCC
Confidence 44445555666777777776421 1 11111 11 122344555554 12467899999999999754211
Q ss_pred --CC------------------CCCEEEEeccCCCCHHHHHHHHccCChhHHH
Q 001989 939 --WP------------------VPGTLMIEPTESESKSWTGIVMLSSPSEKKL 971 (985)
Q Consensus 939 --~p------------------~~~~lris~t~~~t~eeId~~~~~~~l~~~~ 971 (985)
.| ....+.+-++...|++|+++ .++++++++
T Consensus 325 ~~~~~~~~~~~~~~~~p~~~~~~~~~l~LP~~~~l~~~~~~~--i~~~i~~~~ 375 (376)
T TIGR02379 325 HSSPAGRYFGRFHGEDIYTTKESERLVRLPLYYGLSKEDQAR--VIQTICDYL 375 (376)
T ss_pred CcchhHHhhCCCCCCChHHHHHHhceEEccCCCCCCHHHHHH--HHHHHHHHh
Confidence 11 02356776677899999999 777777653
|
This family consists of TDP-4-keto-6-deoxy-D-glucose transaminases, the WecE (formerly RffA) protein of enterobacterial common antigen (ECA) biosynthesis, from enterobacteria. It also includes closely matching sequence from species not expected to make ECA, but which contain other genes for the biosynthesis of TDP-4-keto-6-deoxy-D-Glc, an intermediate in the biosynthesis of other compounds as well and the substrate of WecA. This family belongs to the DegT/DnrJ/EryC1/StrS aminotransferase family (pfam01041). |
| >PRK07046 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.8e-14 Score=168.79 Aligned_cols=329 Identities=15% Similarity=0.114 Sum_probs=198.7
Q ss_pred ccccccccCCCccccccccccccccccCCCCchhhhhhHHHHHHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHH
Q 001989 592 IPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAY 671 (985)
Q Consensus 592 ~~lG~~t~~~~~~~~~~~~~~~~f~~~~p~~p~e~~~G~~~~~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~ 671 (985)
..||++++.+..+...+...-..+. .+. +...++.+.++++++++. ..+.+||++|++++++++|.|
T Consensus 87 ~~lGh~~p~i~~Av~~q~~~~~~~~--~~~----------~~~~~lAe~l~~~~~~~~-v~F~nSGtEA~e~AlrlAR~~ 153 (453)
T PRK07046 87 AMFGHSPAPVARALAEQARRGLTTM--LPS----------EDAAWVGEELARRFGLPY-WQVATTATDANRFVLRWARAV 153 (453)
T ss_pred cccCCCCHHHHHHHHHHHHhCCCCC--CCC----------HHHHHHHHHHHHHhCCCE-EEEECCHHHHHHHHHHHHHHh
Confidence 4578887777766554432211111 111 223467888888887554 466899999999999999886
Q ss_pred HHhcCCCCCCEEEE-cCCCCcccHHHHHH------------CCc------EEEEEcCCCCCCCCHHHHHHHHHhcCCCEE
Q 001989 672 HKARGDHHRNVCII-PVSAHGTNPATAAM------------CGM------KIVSVGTDAKGNINIEELRKAAEANRDNLS 732 (985)
Q Consensus 672 ~~~~g~~~~~~IIv-~~~~Hg~~~~~a~~------------~G~------~vv~v~~d~~g~iD~e~L~~~i~~~~~~t~ 732 (985)
+++++||. ...+||.+...... .|. .+..+|. .|++++++.+. +++++
T Consensus 154 ------TGr~~ii~~~g~YHG~~d~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-----nd~~~l~~~l~--~~~vA 220 (453)
T PRK07046 154 ------TGRPKILVFNGCYHGTVDDVFVDLVDGRPVQRPGLLGQVHDLTATTRVVEF-----NDLAALEAALA--DGDVA 220 (453)
T ss_pred ------hCCCEEEEECCCCCCCcHHhHhhccCCCCCCCCCCCCCCccccCceEeeCC-----CCHHHHHHHhC--CCCeE
Confidence 34667775 66799976443211 111 1233333 38999999985 36788
Q ss_pred EEEEEcC-CCccccccC---HHHHHHHHHHcCCEEEEEcccc--ccccCCCCCCccCCcEEEeCCcccccccCCCCCCce
Q 001989 733 TLMVTYP-STHGVYEEG---IDEICKIIHDNGGQVYMDGANM--NAQVGLTSPGYIGADVCHLNLHKTFCIPHGGGGPGM 806 (985)
Q Consensus 733 ~Vvv~~p-n~~G~i~~d---i~eI~~la~~~galliVD~a~~--~~~~~l~~pg~~g~Di~~~s~hK~l~~p~g~GGPg~ 806 (985)
+|+++-. ...|.+.++ ++++.++|+++|+++|+|+++. .+.++...--..-+|++++ .|.+ ++|-| +
T Consensus 221 avi~EPi~g~~G~~~p~~~fl~~lr~lc~~~g~llI~DEV~tfr~g~Gg~~~~~gv~PDi~t~--gK~l----ggG~P-i 293 (453)
T PRK07046 221 AVLAEPAMTNIGMVLPEPGFHEALRELTRRYGTLLVIDETHTISSGPGGYTRAHGLEPDFLVV--GKPI----AGGVP-C 293 (453)
T ss_pred EEEECCCCCCCCCcCCCHHHHHHHHHHHHHhCCEEEEEccccCccCCcchhHHhCCCccceee--hhhh----cCCCc-c
Confidence 8888642 345666533 8999999999999999999985 2344331111223799875 3776 44445 6
Q ss_pred EEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHh
Q 001989 807 GPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRL 886 (985)
Q Consensus 807 G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L 886 (985)
|.+++++++.+.+...... .........+++.|+++.++++.+.|..+..+++ .++..+..++|+++|
T Consensus 294 ~av~g~~~i~~~~~~~~~~---------~~~~~~~~~~T~~gnpl~~aa~~a~L~~l~~~~~---~~~~~~~g~~l~~~L 361 (453)
T PRK07046 294 AVYGFSAELAERAQAAKAS---------APPGHSGIGTTLSANALAMAAMRATLAEVMTEAA---YAHMLALAARLAAGL 361 (453)
T ss_pred eeeeehHHHHHHHhhcccc---------CCCCCceeCCCCcccHHHHHHHHHHHHHHhcccH---HHHHHHHHHHHHHHH
Confidence 7777787766544211000 0000112234566788888888899988865443 446667788888888
Q ss_pred hc---cCC--eeecCCCCceeeEEEEEecCccc--c--CCCC---HHHHHHHHHHCCCccCCCCCCCCCEEEEeccCCCC
Q 001989 887 EK---HYP--ILFRGVNGTVAHEFIVDLRGLKN--T--AGIE---PEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESES 954 (985)
Q Consensus 887 ~~---g~~--l~~~~~~~~~~~~~iv~~~~~~~--~--~g~~---~~~v~~~L~~~Gi~~~~~~~p~~~~lris~t~~~t 954 (985)
++ ..+ ..+.+. +..+ .+.+.-..... . ...+ ...+...|.++|+++... .+.++++++ +|
T Consensus 362 ~~l~~~~~~~~~v~g~-G~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gv~~~~~----~~~~~~~p~--~t 433 (453)
T PRK07046 362 RAVIARHGLPWHVTRV-GARV-EFQFAPTPPRNGAEAAAALDPELEAALHLYLLNRGVLITPF----HNMMLVCPA--TT 433 (453)
T ss_pred HHHHHhCCCCeEEEEe-CcEE-EEEEeCCCCCCHHHHhcccCHHHHHHHHHHHHHCCCEEecc----cCcEEEeCC--CC
Confidence 64 122 222221 2211 22221110000 0 0001 235667788899987432 256788875 89
Q ss_pred HHHHHHHHccCChhHHHHhhc
Q 001989 955 KSWTGIVMLSSPSEKKLHRLK 975 (985)
Q Consensus 955 ~eeId~~~~~~~l~~~~~~~~ 975 (985)
++|||+ +++++++++.++.
T Consensus 434 ~~did~--~~~~~~~~l~~~~ 452 (453)
T PRK07046 434 AADVDR--LVAAFDACLGELL 452 (453)
T ss_pred HHHHHH--HHHHHHHHHHHHh
Confidence 999999 8899999887653
|
|
| >PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.64 E-value=6.5e-14 Score=163.15 Aligned_cols=142 Identities=24% Similarity=0.253 Sum_probs=117.6
Q ss_pred HHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc---hh
Q 001989 214 LNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL---KD 290 (985)
Q Consensus 214 ~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~---~~ 290 (985)
..+++.+|++.|.+. +.++.+|++++.++++++ +. +||+|+++...|+.....+...++..|++++++|. ++
T Consensus 67 ~~Le~~lA~leg~~~--al~~~sG~~Ai~~al~~l-l~--~GD~Vlv~~~~y~~t~~~~~~~~~~~Gv~v~~vd~~d~e~ 141 (431)
T PRK08248 67 DVFEKRIAALEGGIG--ALAVSSGQAAITYSILNI-AS--AGDEIVSSSSLYGGTYNLFAHTLPKLGITVKFVDPSDPEN 141 (431)
T ss_pred HHHHHHHHHHhCCCc--EEEECCHHHHHHHHHHHH-hC--CCCEEEEccCchhhHHHHHHHHHHhCCEEEEEECCCCHHH
Confidence 347789999999764 778899999888877665 33 89999999999998888887767789999999976 45
Q ss_pred hhc-cCCCEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCCCCCcccceEEEecC-ccccc
Q 001989 291 IDY-KSGDVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKPPGELGADIVVGSA-QRFGV 361 (985)
Q Consensus 291 l~~-l~~~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~~~~~~GaDi~v~s~-k~lg~ 361 (985)
+++ ++++|++|++++| |++|.+.|+++|+++||++|++++|| +.++.+....|.++|+|+++.|+ |.+++
T Consensus 142 l~~ai~~~tklV~l~sp~NPtG~v~di~~I~~la~~~gi~vIvD-~t~a~~~~~~pl~~gaDivv~S~tK~lgg 214 (431)
T PRK08248 142 FEAAITDKTKALFAETIGNPKGDVLDIEAVAAIAHEHGIPLIVD-NTFASPYLLRPIEHGADIVVHSATKFIGG 214 (431)
T ss_pred HHHhcCCCCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEe-CCCCccccCChhHcCCCEEEEcCccccCC
Confidence 556 7888999999887 88999999999999999999999995 34555555666789999999998 66654
|
|
| >PRK07812 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.63 E-value=3.4e-14 Score=165.29 Aligned_cols=230 Identities=21% Similarity=0.198 Sum_probs=154.8
Q ss_pred HHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeC-c---hh
Q 001989 215 NFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSD-L---KD 290 (985)
Q Consensus 215 e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~-~---~~ 290 (985)
++++.+|++.|.+. +.++.+|++++.++++++ .. +||+||++...|..+...+...++..|++++.++ . ++
T Consensus 73 ~Le~~lA~l~g~~~--av~~sSG~aAi~~al~al-l~--~Gd~Vv~~~~~y~~t~~~~~~~l~~~Gi~v~~vdd~~d~e~ 147 (436)
T PRK07812 73 VVEQRIAALEGGVA--ALLLASGQAAETFAILNL-AG--AGDHIVSSPRLYGGTYNLFHYTLPKLGIEVSFVEDPDDLDA 147 (436)
T ss_pred HHHHHHHHHhCCCe--EEEEccHHHHHHHHHHHH-hC--CCCEEEEeCCcchHHHHHHHHHhhcCeEEEEEECCCCCHHH
Confidence 57789999999876 678889999888877765 23 8999999999998888777665567899999985 3 34
Q ss_pred hhc-cCCCEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCCCCCcccceEEEecC-ccccccCCCCC
Q 001989 291 IDY-KSGDVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKPPGELGADIVVGSA-QRFGVPMGYGG 367 (985)
Q Consensus 291 l~~-l~~~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~~~~~~GaDi~v~s~-k~lg~P~~~GG 367 (985)
+++ ++++|++|++.+| |++|.+.|+++|+++||++|++++||+ .++.+.+..|.++|+|+++.|+ |.++++ |+
T Consensus 148 l~~ai~~~tklV~ie~~sNp~G~v~Dl~~I~~la~~~gi~liVD~-t~a~~~~~~pl~~GaDivv~S~tK~lgg~---G~ 223 (436)
T PRK07812 148 WRAAVRPNTKAFFAETISNPQIDVLDIPGVAEVAHEAGVPLIVDN-TIATPYLIRPLEHGADIVVHSATKYLGGH---GT 223 (436)
T ss_pred HHHhCCCCCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEEC-CCcccccCCchhcCCCEEEEecccccCCC---CC
Confidence 555 7889999999987 789999999999999999999999953 5566666677889999999998 666532 22
Q ss_pred CcEEEEEEc-hhhHhcCCCceeeeeecCCCCcceee----ec-------ccccccccccccCCCccchhHHHHHHHHHHH
Q 001989 368 PHAAFLATS-QEYKRMMPGRIVGVSIDSSGKPALRV----AM-------QTREQHIRRDKATSNICTAQALLANMAAMYA 435 (985)
Q Consensus 368 P~~G~l~~~-~~~~~~lp~~~vG~t~d~~g~~~~~l----~l-------~tre~~irre~atsni~t~~~l~a~~aa~~l 435 (985)
.+|.+++. ..+...-+ .+..+..+ .+.|.- .+ +-+ ...++.-| +..++ . ..|+
T Consensus 224 -~i~G~vv~~~~~~~~~~-~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~G----~~l~p---~--~a~l 288 (436)
T PRK07812 224 -AIAGVIVDGGTFDWTQG-RFPGFTTP---DPSYHGVVFAELGPPAYALKAR-VQLLRDLG----SAISP---F--NAFL 288 (436)
T ss_pred -eEEEEEEcCCccccccc-cccccccC---CcccccchhhhcchhHHHHHHH-HHHHHhcC----CCCCH---H--HHHH
Confidence 23444443 32111111 11121111 000100 00 000 00111111 00011 1 1245
Q ss_pred HHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeE
Q 001989 436 VYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVE 468 (985)
Q Consensus 436 ~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~ 468 (985)
...|-+-+..+.++..++|..+++.|++.+.++
T Consensus 289 ~~rgl~tL~~R~~~~~~nA~~la~~L~~~p~v~ 321 (436)
T PRK07812 289 IAQGLETLSLRIERHVANAQRVAEFLEARDEVA 321 (436)
T ss_pred HhcCcCcHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 667777788888999999999999999985454
|
|
| >TIGR01264 tyr_amTase_E tyrosine aminotransferase, eukaryotic | Back alignment and domain information |
|---|
Probab=99.63 E-value=1e-13 Score=161.35 Aligned_cols=298 Identities=12% Similarity=0.065 Sum_probs=175.4
Q ss_pred HHHHHHHHHhC-----CCccceec-CcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcC
Q 001989 636 NLGEWLCTITG-----FDSFSLQP-NAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGT 709 (985)
Q Consensus 636 e~~~~la~l~G-----~~~~~~~~-~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~ 709 (985)
++++.++++++ .+...+.. +++++|... +++.+. .++++|+++++.+..+...++..|++++.+++
T Consensus 77 ~lr~aia~~~~~~~~~~~~~~i~~t~G~~~al~~---~~~~l~-----~~gd~v~i~~P~y~~~~~~~~~~g~~v~~~~~ 148 (401)
T TIGR01264 77 SAREAIASYYHNPDGPIEADDVVLCSGCSHAIEM---CIAALA-----NAGQNILVPRPGFPLYETLAESMGIEVKLYNL 148 (401)
T ss_pred HHHHHHHHHHhhcCCCCCHHHEEECcChHHHHHH---HHHHhC-----CCCCEEEEeCCCChhHHHHHHHcCCEEEEeec
Confidence 34455555554 33344444 444455433 333321 36789999988776666678889999999987
Q ss_pred CC--CCCCCHHHHHHHHHhcCCCEEEEEEEcCC-Cccccc--cCHHHHHHHHHHcCCEEEEEccccccc-cC--CCCCCc
Q 001989 710 DA--KGNINIEELRKAAEANRDNLSTLMVTYPS-THGVYE--EGIDEICKIIHDNGGQVYMDGANMNAQ-VG--LTSPGY 781 (985)
Q Consensus 710 d~--~g~iD~e~L~~~i~~~~~~t~~Vvv~~pn-~~G~i~--~di~eI~~la~~~galliVD~a~~~~~-~~--l~~pg~ 781 (985)
+. ++.+|+++|+++++ +++++|++++|+ ++|.+. .++++|.++|+++|+++++|+++..-. .+ +.....
T Consensus 149 ~~~~~~~~d~~~l~~~~~---~~~~~v~~~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~ 225 (401)
T TIGR01264 149 LPDKSWEIDLKQLESLID---EKTAALIVNNPSNPCGSVFSRQHLEEILAVAERQCLPIIADEIYGDMVFSGATFEPLAS 225 (401)
T ss_pred CCccCCCCCHHHHHHHhc---cCceEEEEcCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEhhhhhhccCCcccccHHH
Confidence 54 46899999999887 678899999994 799885 258999999999999999999874211 11 100011
Q ss_pred cCC---cEEEeCCcccccccCCCCCCceEEEEEccc------ccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHH
Q 001989 782 IGA---DVCHLNLHKTFCIPHGGGGPGMGPIGVKKH------LAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALI 852 (985)
Q Consensus 782 ~g~---Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~------l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~ 852 (985)
+.. -|++.|+.|+|++| |.++|++++.+. +...+... .. ...++++ ..+.
T Consensus 226 ~~~~~~vi~~~SfSK~~~~~----GlRiG~iv~~~~~~~~~~~~~~~~~~------------~~-~~~~~~~--~~q~-- 284 (401)
T TIGR01264 226 LSSTVPILSCGGLAKRWLVP----GWRLGWIIIHDRRGILRDIRDGLVKL------------SQ-RILGPCT--IVQG-- 284 (401)
T ss_pred cCCCCcEEEEccCcccCCCc----cceEEEEEecCcchhHHHHHHHHHHH------------hh-ccCCCCc--HHHH--
Confidence 111 25677888887654 788999998641 11111100 00 0011111 1121
Q ss_pred HHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhccCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHH-HCC
Q 001989 853 LPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLM-DYG 931 (985)
Q Consensus 853 ~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~-~~G 931 (985)
++..+|.....+-+++..+...++.+++.+.|++..++.+..+.+..+ +.++++........+..+++++|. ++|
T Consensus 285 --a~~~~l~~~~~~~l~~~~~~~~~~r~~l~~~L~~~~~~~~~~p~~g~f--~~~~~~~~~~~~~~~~~~~~~~l~~~~g 360 (401)
T TIGR01264 285 --ALPSILLRTPQEYFDGTLSVLESNAMLCYGALAAVPGLRPVMPSGAMY--MMVGIEMEHFPEFKNDVEFTERLVAEQS 360 (401)
T ss_pred --HHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCCeeeE--EEEEecccccCCCCCHHHHHHHHHHhCC
Confidence 122333321233445555566777888888887621222212222222 234443100001134678888875 689
Q ss_pred CccCCC-CCCCCCEEEEeccCCCCHHHHHHHHccCChhHHHHh
Q 001989 932 FHGPTM-SWPVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHR 973 (985)
Q Consensus 932 i~~~~~-~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~ 973 (985)
|.+... .|..++++||++.. +.++++. .++.|.+.+++
T Consensus 361 I~v~pg~~f~~~~~iRis~~~--~~~~l~~--~l~rl~~~~~~ 399 (401)
T TIGR01264 361 VFCLPGSCFEYPGFFRVVLTV--PVVMMEE--ACSRIQEFCER 399 (401)
T ss_pred EEEeCchhcCCCCeEEEEEcC--CHHHHHH--HHHHHHHHHhc
Confidence 986532 23345899999974 4788888 66777776654
|
This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs. |
| >PRK07582 cystathionine gamma-lyase; Validated | Back alignment and domain information |
|---|
Probab=99.63 E-value=3e-14 Score=163.17 Aligned_cols=269 Identities=15% Similarity=0.109 Sum_probs=167.7
Q ss_pred HHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHH----HHHCCcEEEEEcC
Q 001989 634 FNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPAT----AAMCGMKIVSVGT 709 (985)
Q Consensus 634 ~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~----a~~~G~~vv~v~~ 709 (985)
..++++.++++.+ ...+.+++|+.|+.+++.++ . +++|+||+++..|+..... +...|++++.++.
T Consensus 53 ~~~Le~~lA~l~~--~~~v~~~sG~~Ai~~~l~al---l-----~~Gd~Vl~~~~~y~~~~~~~~~~l~~~G~~v~~v~~ 122 (366)
T PRK07582 53 WRALEAALGELEG--AEALVFPSGMAAITAVLRAL---L-----RPGDTVVVPADGYYQVRALAREYLAPLGVTVREAPT 122 (366)
T ss_pred HHHHHHHHHHHcC--CCEEEECCHHHHHHHHHHHh---c-----CCCCEEEEeCCCcHhHHHHHHHHHhcCeEEEEEECC
Confidence 3478889999982 33456677877664444332 1 4778999987655443332 2457999999987
Q ss_pred CCCCCCCHHHHHHHHHhcCCCEEEEEEEcCC-CccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCccCCcEEE
Q 001989 710 DAKGNINIEELRKAAEANRDNLSTLMVTYPS-THGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIGADVCH 788 (985)
Q Consensus 710 d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~pn-~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~g~Di~~ 788 (985)
++++ + .+. +++++|++++|+ ++|.+. |+++|+++||++|++++||+++....+ ..|.++++|+++
T Consensus 123 ~~~~-------~-~~~---~~t~lV~le~p~NPtg~v~-di~~I~~~a~~~g~~lvVD~t~~~~~~--~~p~~~g~Divv 188 (366)
T PRK07582 123 AGMA-------E-AAL---AGADLVLAETPSNPGLDVC-DLAALAAAAHAAGALLVVDNTTATPLG--QRPLELGADLVV 188 (366)
T ss_pred CChH-------H-Hhc---cCceEEEEECCCCCCCCcc-CHHHHHHHHHHcCCEEEEECCCCCccc--cCchhcCCcEEE
Confidence 5321 1 233 689999999995 688777 899999999999999999998742222 246678999999
Q ss_pred eCCcccccccCCCCCCceEEEEEc-ccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHH
Q 001989 789 LNLHKTFCIPHGGGGPGMGPIGVK-KHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKG 867 (985)
Q Consensus 789 ~s~hK~l~~p~g~GGPg~G~i~~~-~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eG 867 (985)
.|+||+++.+ +|-.+|+++++ +++.+.+.... ..++...+ + ..+|..+..+ +-
T Consensus 189 ~S~sK~l~G~---~g~~~G~v~~~~~~l~~~l~~~~-------------~~~g~~~~-----~---~~a~l~~r~l--~t 242 (366)
T PRK07582 189 ASDTKALTGH---SDLLLGYVAGRDPELMAAVERWR-------------LLAGAIPG-----P---FEAWLAHRSL--GT 242 (366)
T ss_pred ecccccccCC---CCeeEEEEEcCcHHHHHHHHHHH-------------HHhCCCCC-----H---HHHHHHHhcc--cc
Confidence 9999998421 22346888875 44444332100 00111111 1 1234333333 34
Q ss_pred HHHHHHHHHHHHHHHHHHhhccC---CeeecCCC-Cc-----------eeeEEEEEecCccccCCCCHHHHHHHHHHCCC
Q 001989 868 LTEASKIAILNANYMAKRLEKHY---PILFRGVN-GT-----------VAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGF 932 (985)
Q Consensus 868 l~~~~~~~~~~a~~l~~~L~~g~---~l~~~~~~-~~-----------~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi 932 (985)
+..+.++..+++..+++.|++.. .+.+++-. .+ ....+.+.++ +.+++.+.|...++
T Consensus 243 l~~R~~~~~~na~~la~~L~~~p~v~~v~yp~l~~~p~~~~~~~~~~~~gg~~s~~~~--------~~~~~~~~~~~l~~ 314 (366)
T PRK07582 243 LGLRFARQCANALAVAELLAGHPAVRGVRYPGLPGDPAHEVAARQMRRFGGLVSFELA--------DAAAAERFVAASRL 314 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHhhCCCCcceEEEEeC--------CHHHHHHHHHhCCc
Confidence 56667888899999999998743 33444311 11 1112333332 35666666666666
Q ss_pred ccCCCCC---------C------C-CCEEEEeccCCCCHHHHHH
Q 001989 933 HGPTMSW---------P------V-PGTLMIEPTESESKSWTGI 960 (985)
Q Consensus 933 ~~~~~~~---------p------~-~~~lris~t~~~t~eeId~ 960 (985)
.....++ + + ++.||+|+...++++.|+.
T Consensus 315 ~~~~~s~G~~~sl~~~~~~~~~~~~~~liR~svGlE~~~dli~d 358 (366)
T PRK07582 315 VVAATSFGGVHTSADRRARWGDAVPEGFVRLSCGIEDTDDLVAD 358 (366)
T ss_pred ceecccCCCccchhhhHHHcCCCCCCCeEEEEeccCCHHHHHHH
Confidence 5321110 1 1 3679999999988888888
|
|
| >PRK06107 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=3.6e-14 Score=165.04 Aligned_cols=307 Identities=15% Similarity=0.104 Sum_probs=187.6
Q ss_pred hhHHHHHHHHHHHHHHHhCCCc--cceecCcH-HHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEE
Q 001989 628 QGYQEMFNNLGEWLCTITGFDS--FSLQPNAG-AAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKI 704 (985)
Q Consensus 628 ~G~~~~~~e~~~~la~l~G~~~--~~~~~~sG-a~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~v 704 (985)
+|..++.+.+.+++++.+|.+. .++..++| ++|...++. .. .++++.|+++++.++.+.......|.++
T Consensus 70 ~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~---~~-----~~~gd~vl~~~p~y~~y~~~~~~~~~~~ 141 (402)
T PRK06107 70 NGTPALRKAIIAKLERRNGLHYADNEITVGGGAKQAIFLALM---AT-----LEAGDEVIIPAPYWVSYPDMVLANDGTP 141 (402)
T ss_pred CCCHHHHHHHHHHHHHhcCCCCChhhEEEeCCHHHHHHHHHH---Hh-----cCCCCEEEEecCCCcCHHHHHHHcCCEE
Confidence 6777777888888888888743 34555555 455533332 22 1468899999988888877777888888
Q ss_pred EEEcCCC--CCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccc--cCHHHHHHHHHHc-CCEEEEEcccccc-ccC--
Q 001989 705 VSVGTDA--KGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYE--EGIDEICKIIHDN-GGQVYMDGANMNA-QVG-- 775 (985)
Q Consensus 705 v~v~~d~--~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~--~di~eI~~la~~~-galliVD~a~~~~-~~~-- 775 (985)
+.++++. ++.+|+++|+++++ +++++|++++| |++|.+. .++++|+++|+++ |+++++|.++..- ...
T Consensus 142 ~~v~~~~~~~~~~~~~~l~~~~~---~~~~~v~l~~p~NPtG~~~s~~~~~~l~~~a~~~~~~~iI~De~y~~l~~~~~~ 218 (402)
T PRK06107 142 VIVACPEEQGFKLTPEALEAAIT---PRTRWLILNAPSNPTGAVYSRAELRALADVLLRHPHVLVLTDDIYDHIRFDDEP 218 (402)
T ss_pred EEecCCcccCCCCCHHHHHhhcC---cCceEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCCeEEEEehhccccccCCCC
Confidence 8888753 35799999999987 68889999998 5799885 2478888899998 9999999987310 011
Q ss_pred CCC-----CCccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhh
Q 001989 776 LTS-----PGYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSA 850 (985)
Q Consensus 776 l~~-----pg~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~ 850 (985)
+.. ++..+--+++.|++|.|+.| |.++|++++++++...+.... .......+ ...+.
T Consensus 219 ~~~~~~~~~~~~~~vi~~~S~SK~~~~p----GlRiG~~~~~~~~~~~~~~~~------------~~~~~~~s--~~~q~ 280 (402)
T PRK06107 219 TPHLLAAAPELRDRVLVTNGVSKTYAMT----GWRIGYAAGPADLIAAINKLQ------------SQSSSCPS--SISQA 280 (402)
T ss_pred CCCHHHhCcCccCCEEEEeccchhhcCc----ccceeeeecCHHHHHHHHHHH------------HhcccCCC--hHHHH
Confidence 100 11111235677889998654 568899998877654432110 00001111 11121
Q ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhccCCeeecCCCCceeeEEEEEecCc---cccCC---CCHHHHH
Q 001989 851 LILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGL---KNTAG---IEPEDVA 924 (985)
Q Consensus 851 ~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~g~~l~~~~~~~~~~~~~iv~~~~~---~~~~g---~~~~~v~ 924 (985)
++..+|. -+..-+++..+...++.+++.+.|++..++.+..+.+.++ +.++++.+ ....+ .+..+++
T Consensus 281 ----~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~L~~~~g~~~~~p~gg~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (402)
T PRK06107 281 ----AAAAALN-GDQSFVTESVAVYKQRRDYALALLNAIPGLSCLVPDGAFY--LYVNCAGLIGKTTPEGKVLETDQDVV 353 (402)
T ss_pred ----HHHHHhc-CChHHHHHHHHHHHHHHHHHHHHHhcCCCCcccCCCcceE--EeeecccccccccccccCCCCHHHHH
Confidence 1112222 1233344445556777788888887621222222223222 23343211 00011 1456777
Q ss_pred HHH-HHCCCccCC-CCCCCCCEEEEeccCCCCHHHHHHHHccCChhHHHHhh
Q 001989 925 KRL-MDYGFHGPT-MSWPVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRL 974 (985)
Q Consensus 925 ~~L-~~~Gi~~~~-~~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~ 974 (985)
+.| .++||.+.. ..|...+++||++.. +.|++++ .++.|++.+.++
T Consensus 354 ~~l~~~~gv~v~pg~~Fg~~~~iRis~~~--~~e~l~~--~l~~l~~~l~~~ 401 (402)
T PRK06107 354 LYLLDSAGVAVVQGTAYGLSPYFRLSIAT--SLETLEE--ACARIERAVAAL 401 (402)
T ss_pred HHHHHhCCEEEeCccccCCCCeEEEEeCC--CHHHHHH--HHHHHHHHHHhc
Confidence 665 567998653 334446899999984 6899999 778888777654
|
|
| >PRK00615 glutamate-1-semialdehyde aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.3e-14 Score=166.85 Aligned_cols=322 Identities=13% Similarity=0.108 Sum_probs=191.7
Q ss_pred ccccccccCCCccccccccccccccccCCCCchhhhhhHHHHHHHHHHHHHHHhCCC-ccceecCcHHHHHHHHHHHHHH
Q 001989 592 IPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFD-SFSLQPNAGAAGEYAGLMVIRA 670 (985)
Q Consensus 592 ~~lG~~t~~~~~~~~~~~~~~~~f~~~~p~~p~e~~~G~~~~~~e~~~~la~l~G~~-~~~~~~~sGa~a~~a~l~air~ 670 (985)
..||++++.+..+...+......+. .+ . +...++.+.|+++++.. ...++.+||++|++++++.+|.
T Consensus 65 ~~lGh~~p~v~~ai~~q~~~~~~~~--~~-~---------~~~~~la~~L~~~~~~~~~~v~f~~SGsEA~e~AiklAr~ 132 (433)
T PRK00615 65 LIHGHSHPKICDAIQQGAERGTSYG--LT-S---------EQEILFAEELFSYLGLEDHKIRFVSSGTEATMTAVRLARG 132 (433)
T ss_pred cccCCCCHHHHHHHHHHHHhCCCCC--CC-C---------HHHHHHHHHHHHhCCCCcCEEEEeCchHHHHHHHHHHHHH
Confidence 4688888777766544432211111 11 1 12346778888887643 2456779999999999999887
Q ss_pred HHHhcCCCCCCEEEE-cCCCCcccHH---HHHHCCc----------------EEEEEcCCCCCCCCHHHHHHHHHhcCCC
Q 001989 671 YHKARGDHHRNVCII-PVSAHGTNPA---TAAMCGM----------------KIVSVGTDAKGNINIEELRKAAEANRDN 730 (985)
Q Consensus 671 ~~~~~g~~~~~~IIv-~~~~Hg~~~~---~a~~~G~----------------~vv~v~~d~~g~iD~e~L~~~i~~~~~~ 730 (985)
| +++.+||. ...+||.... .....+- ....++ ..|++++++.+.++.++
T Consensus 133 ~------tgr~~ii~~~~~yHG~td~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~d~~~l~~~l~~~~~~ 201 (433)
T PRK00615 133 I------TGRSIIIKFLGCYHGHADTLLQGISFSETSLDTLTHLVDTDLAHPLTLSLP-----YNDFQIFQTVMNSLGHR 201 (433)
T ss_pred h------hCCCEEEEEcCccCCCCcccCcccccCCCCcCcCCCCCCCCCCCCCeEeCC-----CCCHHHHHHHHHhcCCc
Confidence 6 24556765 6679996522 1111110 011112 23889999999765567
Q ss_pred EEEEEEEcC-CCccccccC---HHHHHHHHHHcCCEEEEEccccccc--cCCCCCCc--cCCcEEEeCCcccccccCCCC
Q 001989 731 LSTLMVTYP-STHGVYEEG---IDEICKIIHDNGGQVYMDGANMNAQ--VGLTSPGY--IGADVCHLNLHKTFCIPHGGG 802 (985)
Q Consensus 731 t~~Vvv~~p-n~~G~i~~d---i~eI~~la~~~galliVD~a~~~~~--~~l~~pg~--~g~Di~~~s~hK~l~~p~g~G 802 (985)
+++|+++.. +..|.+.++ +++|.++|+++|+++|+|++|. +. +.+..... ..+|++++ .|.+ ++|
T Consensus 202 ~aavI~Epv~~~~G~~~p~~~yl~~l~~lc~~~g~llI~DEv~t-G~R~G~~ga~~~~gv~PDi~~~--gK~l----ggG 274 (433)
T PRK00615 202 VAGVIFEPICANMGVVLPKPGFIEGIIQTCRRTGSLSIMDEVVT-GFRVAQGGAAAIYHVKPDITVY--GKIL----GGG 274 (433)
T ss_pred eEEEEECCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEEcccc-cccccHhHHHHhcCCCCCeEEE--cccc----cCC
Confidence 788877653 345776521 5699999999999999999883 32 11100111 23788875 3776 334
Q ss_pred CCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHH
Q 001989 803 GPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYM 882 (985)
Q Consensus 803 GPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l 882 (985)
-| +|.+++++++.+.+... + ...+.+++.|+++.++++.+.|..+..+.+ .++..++.++|
T Consensus 275 ~p-~~av~~~~~i~~~~~~~--~-------------~~~~~~T~~g~p~~~aa~la~L~~i~~~~~---~~~~~~~g~~l 335 (433)
T PRK00615 275 LP-AAAVVAHKSIMDHLAPE--G-------------TIFQAGTLSGNPLAMAAGKASINLCREQGF---YTQLSTLEQNF 335 (433)
T ss_pred cc-eeeeeecHHHHhhhcCC--C-------------CcccCCCCcccHHHHHHHHHHHHHHhcccH---HHHHHHHHHHH
Confidence 35 56677787776655211 0 001122344577778888888988876544 44666777888
Q ss_pred HHHhhc-----cCCeeecCCCCceeeEEEEEecCccccCC---------CCHHHHHHHHHHCCCccCCCCCCCCCEEEEe
Q 001989 883 AKRLEK-----HYPILFRGVNGTVAHEFIVDLRGLKNTAG---------IEPEDVAKRLMDYGFHGPTMSWPVPGTLMIE 948 (985)
Q Consensus 883 ~~~L~~-----g~~l~~~~~~~~~~~~~iv~~~~~~~~~g---------~~~~~v~~~L~~~Gi~~~~~~~p~~~~lris 948 (985)
.++|++ ++.+.... .+. + +.+.+..- ...+ .....+.+.|.++|+++....+|. ..
T Consensus 336 ~~~l~~~~~~~g~~v~~~r-~G~-~--~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~-----~~ 405 (433)
T PRK00615 336 LSPIEEMIRSQGFPVSLVR-YGS-M--FSFFFNEN-RPNNLAEAQLSDIEAFQTFYQSAFSKGVYLSPSPFEA-----SF 405 (433)
T ss_pred HHHHHHHHHHcCCCeEEEe-ece-E--EEEEEeCC-CCCChHHHhhCCHHHHHHHHHHHHHCCeeecCccccc-----cc
Confidence 777754 23332211 121 1 22222100 0000 012368888999999886544331 14
Q ss_pred ccCCCCHHHHHHHHccCChhHHHHhh
Q 001989 949 PTESESKSWTGIVMLSSPSEKKLHRL 974 (985)
Q Consensus 949 ~t~~~t~eeId~~~~~~~l~~~~~~~ 974 (985)
++..+|++|||+ ++++++++++..
T Consensus 406 ls~~ht~~did~--~~~a~~~~~~~~ 429 (433)
T PRK00615 406 LSSAHSMENLDY--AQNVLIDSLEKV 429 (433)
T ss_pred eecCCCHHHHHH--HHHHHHHHHHHH
Confidence 556689999999 889999888764
|
|
| >PRK03317 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.3e-14 Score=164.79 Aligned_cols=288 Identities=14% Similarity=0.126 Sum_probs=180.7
Q ss_pred hHHHHHHHHHHHHHHHhCC--CccceecCcHHH-HHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEE
Q 001989 629 GYQEMFNNLGEWLCTITGF--DSFSLQPNAGAA-GEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIV 705 (985)
Q Consensus 629 G~~~~~~e~~~~la~l~G~--~~~~~~~~sGa~-a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv 705 (985)
|..++.+.+.+++.+..|. +...+..++|++ +. .++++.+. .+++.|+++.+.+..+...++..|.+++
T Consensus 66 g~~~lr~aia~~~~~~~~~~~~~~~I~it~G~~~~l---~~~~~~~~-----~~gd~v~v~~P~y~~~~~~~~~~g~~~~ 137 (368)
T PRK03317 66 DAVALRADLAAYLTAQTGVGLTVENVWAANGSNEIL---QQLLQAFG-----GPGRTALGFVPSYSMHPIIARGTHTEWV 137 (368)
T ss_pred chHHHHHHHHHHhhhhccCCCChhhEEECCCHHHHH---HHHHHHhc-----CCCCEEEEeCCChHHHHHHHHhcCCeeE
Confidence 5444444444555444454 445566666654 33 23333332 4778999988877667777788999998
Q ss_pred EEcCCCCCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEcccccc-ccCCCCCC---
Q 001989 706 SVGTDAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNA-QVGLTSPG--- 780 (985)
Q Consensus 706 ~v~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~galliVD~a~~~~-~~~l~~pg--- 780 (985)
.++.++++.+|++++++++++ .++++|++++| |++|.+. +.+++.++++..++++++|+++..- ..+.....
T Consensus 138 ~~~~~~~~~~d~~~l~~~~~~--~~~~~i~l~~p~NPtG~~~-~~~~l~~l~~~~~~~lI~DE~y~~~~~~~~~~~~~~~ 214 (368)
T PRK03317 138 EGPRAADFTLDVDAAVAAIAE--HRPDVVFLTSPNNPTGTAL-PLDDVEAILDAAPGIVVVDEAYAEFRRSGTPSALTLL 214 (368)
T ss_pred EcccCCCCCCCHHHHHHHHhc--cCCCEEEEeCCCCCCCCCC-CHHHHHHHHHHCCceEEEeCCchhhcccCCcCHHHHH
Confidence 888766778999999999973 36778889999 4699998 8999999999999999999998421 01110000
Q ss_pred ccCCc-EEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHH
Q 001989 781 YIGAD-VCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTY 859 (985)
Q Consensus 781 ~~g~D-i~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~ 859 (985)
....+ +++.|+.|.|++ .|.++|++++++++...+.... ...+++ .....++.++
T Consensus 215 ~~~~~~i~~~SfSK~~g~----~GlRiG~~~~~~~~~~~l~~~~--------------~~~~~s------~~~~~a~~~~ 270 (368)
T PRK03317 215 PEYPRLVVSRTMSKAFAF----AGGRLGYLAAAPAVVDALRLVR--------------LPYHLS------AVTQAAARAA 270 (368)
T ss_pred HhCCCEEEEEechhhhcc----chhhhhhhhCCHHHHHHHHhcC--------------CCCCCC------HHHHHHHHHH
Confidence 01124 456678888754 3678899998877665442110 001111 1112222233
Q ss_pred HHHhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCC
Q 001989 860 IAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMS 938 (985)
Q Consensus 860 l~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~ 938 (985)
+.. .+.+.+..++..++.+++.+.|++ ++.+ ..+.+.++ ++..+ .+..++.+.|.++||.+....
T Consensus 271 l~~--~~~~~~~~~~~~~~~~~l~~~L~~~g~~~--~~~~~~~~--~~~~~--------~~~~~~~~~l~~~Gv~v~~~~ 336 (368)
T PRK03317 271 LRH--ADELLASVAALRAERDRVVAWLRELGLRV--APSDANFV--LFGRF--------ADRHAVWQGLLDRGVLIRDVG 336 (368)
T ss_pred hhC--HHHHHHHHHHHHHHHHHHHHHHHHCCCEe--CCCCCcEE--EEecc--------CCHHHHHHHHHHCCEEEEeCC
Confidence 332 233444445566677788888876 4432 22222221 12222 146789999999999886543
Q ss_pred CCCCCEEEEeccCCCCHHHHHHHHccCChhHHHH
Q 001989 939 WPVPGTLMIEPTESESKSWTGIVMLSSPSEKKLH 972 (985)
Q Consensus 939 ~p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~ 972 (985)
. ++++||++ .+.+|+++ ++++|+++++
T Consensus 337 ~--~~~iRi~~---~~~~~~~~--~~~~l~~~~~ 363 (368)
T PRK03317 337 I--PGWLRVTI---GTPEENDA--FLAALAEVLA 363 (368)
T ss_pred C--CCeEEEec---CCHHHHHH--HHHHHHHHHH
Confidence 2 48999997 47899999 7788887764
|
|
| >KOG2467 consensus Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.3e-14 Score=154.88 Aligned_cols=347 Identities=18% Similarity=0.183 Sum_probs=207.5
Q ss_pred HHhccccCcccccccccccccCCCccccccccccccccccCCCCchhhhhhHHHHHHHHHHHHHHHhCCCc----cceec
Q 001989 579 LLQSKELSLCHSMIPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFDS----FSLQP 654 (985)
Q Consensus 579 ~l~~~~~~~~~~~~~lG~~t~~~~~~~~~~~~~~~~f~~~~p~~p~e~~~G~~~~~~e~~~~la~l~G~~~----~~~~~ 654 (985)
-++++|+....-|-.|||| -.|.+.|-.|-.+ ||--. | =.-++..-+|+..-+.||+|+ +++++
T Consensus 45 LIaSENFts~aVmeAlGS~--ltNKYSEGyPG~R-----YYGGn--e---~ID~iE~LCq~RALeaF~ldp~kWGVNVQp 112 (477)
T KOG2467|consen 45 LIASENFTSRAVMEALGSC--LTNKYSEGYPGAR-----YYGGN--E---YIDQIELLCQKRALEAFGLDPEKWGVNVQP 112 (477)
T ss_pred EeecccchHHHHHHHHhHH--hhcccccCCCccc-----ccCcc--h---HHHHHHHHHHHHHHHHhCCCHHHCceeecc
Confidence 3566665544445567876 3344555544221 22111 1 112223334556667899987 47999
Q ss_pred CcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCccc---HHHH---HHCC----cEEEEEcCCC-CCCCCHHHHHHH
Q 001989 655 NAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTN---PATA---AMCG----MKIVSVGTDA-KGNINIEELRKA 723 (985)
Q Consensus 655 ~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~---~~~a---~~~G----~~vv~v~~d~-~g~iD~e~L~~~ 723 (985)
.||+-|++++..|+. .++++|.--+.-||.| .... +... ++-..+.+|+ .|-+|.|.|++.
T Consensus 113 ~SGSPANfavYtall--------~Ph~RiMGLDLP~GGHLsHGy~T~~kkISa~SiyFeSmPYkv~~~TG~IDYD~Le~~ 184 (477)
T KOG2467|consen 113 YSGSPANFAVYTALL--------KPHERIMGLDLPSGGHLSHGYQTPTKKISATSIYFESMPYKVDPSTGYIDYDKLEKT 184 (477)
T ss_pred CCCCchhhHHHhhhc--------CCCCeeeeccCCCCCccccccccCCceeeeeeeecccCceeeCCCCCceehHHHHHH
Confidence 999999988877764 4778888655545543 2221 1111 1222234454 599999999988
Q ss_pred HHhcCCCEEEEEEEcCCCccccccCHHHHHHHHHHcCCEEEEEccccccc---cCCCCCCccCCcEEEeCCcccccccCC
Q 001989 724 AEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQ---VGLTSPGYIGADVCHLNLHKTFCIPHG 800 (985)
Q Consensus 724 i~~~~~~t~~Vvv~~pn~~G~i~~di~eI~~la~~~galliVD~a~~~~~---~~l~~pg~~g~Di~~~s~hK~l~~p~g 800 (985)
.... +.++|+.....+.-.+ |.+.+.++|.+.|+.+++|.||..++ +...+|.++ +||++.+.||+|
T Consensus 185 A~~f--rPk~iiaG~SaY~R~~--DYaR~R~Iad~~gA~Lm~DMAHISgLVAA~vipsPFey-~DiVTTTTHKsL----- 254 (477)
T KOG2467|consen 185 ATLF--RPKLIIAGTSAYSRLI--DYARFRKIADKVGAYLMADMAHISGLVAAGVIPSPFEY-CDIVTTTTHKSL----- 254 (477)
T ss_pred HHhc--CCcEEEeccccchhhc--cHHHHHHHHHhcCceeehhhhhHHHHHhcccCCCcccc-cceeeccccccc-----
Confidence 7644 3444555443444444 79999999999999999999994333 233456554 899999999998
Q ss_pred CCCCceEEEEEcccccCcCCCC--ccccC-CCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHHHHHHHHHHHH
Q 001989 801 GGGPGMGPIGVKKHLAPFLPSH--PVVST-GGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAIL 877 (985)
Q Consensus 801 ~GGPg~G~i~~~~~l~~~lp~~--~~g~~-~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl~~~~~~~~~ 877 (985)
.||++|+|..|+.....-+.. -+... .+.+... .++..-+.+.... +++.| .+|..-....++++.++...
T Consensus 255 -RGPRg~mIFyRkGvk~~~~k~g~~i~ydlE~kINfa---VFP~lQGGPHNht-IaalA-vALkQa~tpefk~Yq~qV~~ 328 (477)
T KOG2467|consen 255 -RGPRGAMIFYRKGVKSIKPKQGKEILYDLEDKINFA---VFPGLQGGPHNHT-IAALA-VALKQAMTPEFKEYQKQVLK 328 (477)
T ss_pred -cCCcceeEEEeccCCcCCCCCCCcceechhhhhhhh---ccccccCCCCcch-HHHHH-HHHHhhCCHHHHHHHHHHHH
Confidence 799999999987554333221 00000 0000000 0000000011011 11222 23444455668999999999
Q ss_pred HHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCC------CCCCCCEEEEecc
Q 001989 878 NANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTM------SWPVPGTLMIEPT 950 (985)
Q Consensus 878 ~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~------~~p~~~~lris~t 950 (985)
|++.|.++|.+ |++++..| ...|.+++++++ .|++...+-+-|..-+|.++.. +.-.++.|||.-+
T Consensus 329 Nakala~~l~~~Gy~lvtgG---TDnHlvLvDLr~----~G~dGarvE~vle~~~I~~NKNtvpGD~Sal~PgGiRiGtP 401 (477)
T KOG2467|consen 329 NAKALASALISRGYKLVTGG---TDNHLVLVDLRP----KGVDGARVEKVLELCHIALNKNTVPGDKSALSPGGIRIGTP 401 (477)
T ss_pred HHHHHHHHHHHcCceEecCC---ccceEEEEeccc----cCCchHHHHHHHHHhhhhhcCCcCCCCccccCCCceeccch
Confidence 99999999987 88887543 456778899874 5788777777676667765421 1113689999765
Q ss_pred CCC----CHHHHHHHHccCChhHH
Q 001989 951 ESE----SKSWTGIVMLSSPSEKK 970 (985)
Q Consensus 951 ~~~----t~eeId~~~~~~~l~~~ 970 (985)
..+ .++|.++ ..+-|.+.
T Consensus 402 AmTsRG~~e~df~~--v~~fi~~a 423 (477)
T KOG2467|consen 402 AMTSRGFGEEDFEK--VADFIDRA 423 (477)
T ss_pred hhcccCccHHHHHH--HHHHHHHH
Confidence 443 4567666 44444443
|
|
| >PRK06931 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=6.7e-14 Score=164.44 Aligned_cols=328 Identities=15% Similarity=0.217 Sum_probs=195.6
Q ss_pred ccccccccCCCccccccccccccccccCCCCchhhhhhHHHHHHHHHHHHHHHhCCCc----cceecCcHHHHHHHHHHH
Q 001989 592 IPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFDS----FSLQPNAGAAGEYAGLMV 667 (985)
Q Consensus 592 ~~lG~~t~~~~~~~~~~~~~~~~f~~~~p~~p~e~~~G~~~~~~e~~~~la~l~G~~~----~~~~~~sGa~a~~a~l~a 667 (985)
..+|+|++.+..+...+......+.+.. +. .+...++.+.++++++... ..|+.+||++|++++++.
T Consensus 70 ~~lGH~~p~v~~Ai~~q~~~~~~~~~~~-~~--------~~~~~~lAe~L~~~~p~~~~~~~~~f~~~SGsEAve~Alkl 140 (459)
T PRK06931 70 LALGHNHPDVLQSIQDVLTSGLPLHTLD-LT--------TPLKDAFSEYLLSLLPGQGKEYCLQFTGPSGADAVEAAIKL 140 (459)
T ss_pred ccCCCCCHHHHHHHHHHHhhhccccccc-cC--------CHHHHHHHHHHHHhCCCccccceEEEeCCCcHHHHHHHHHH
Confidence 4689998888776555432211111110 11 1234467788888875321 235558999999999999
Q ss_pred HHHHHHhcCCCCCCEEEE-cCCCCcccHHHHHHCC------------cEEEEEcCCCCC--------CCCHHHH----HH
Q 001989 668 IRAYHKARGDHHRNVCII-PVSAHGTNPATAAMCG------------MKIVSVGTDAKG--------NINIEEL----RK 722 (985)
Q Consensus 668 ir~~~~~~g~~~~~~IIv-~~~~Hg~~~~~a~~~G------------~~vv~v~~d~~g--------~iD~e~L----~~ 722 (985)
+|.| +++++||. ...+||....+....| ..+..+|.+... .-+.+++ ++
T Consensus 141 Ar~~------tgr~~Ii~~~~~yHG~t~~als~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (459)
T PRK06931 141 AKTY------TGRSNVISFSGGYHGMTHGALAVTGNLSPKNAVNGLMPGVQFMPYPHEYRCPLGIGGEAGVKALTYYFEN 214 (459)
T ss_pred HHHh------cCCCeEEEECCCcCCccHHHHhhcCCcccccCCCCCCCCcEEeCCCccccccccCCchhHHHHHHHHHHH
Confidence 9876 24566775 6789998866653211 123444432111 1123433 33
Q ss_pred HHHh---cCCCEEEEEEEcC-CCcccccc---CHHHHHHHHHHcCCEEEEEccccccccCCCCCCcc--------CCcEE
Q 001989 723 AAEA---NRDNLSTLMVTYP-STHGVYEE---GIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYI--------GADVC 787 (985)
Q Consensus 723 ~i~~---~~~~t~~Vvv~~p-n~~G~i~~---di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~--------g~Di~ 787 (985)
.+++ ..+++++|+++-. ...|++.+ -+++|.++|+++|+++|+|+++ .|+.+.|.+ -+|++
T Consensus 215 ~~~~~~~~~~~iAAvI~EPiqg~gG~~~~~~~yl~~lr~lc~~~g~LlI~DEV~----tGfGRtG~~~a~~~~gv~PDiv 290 (459)
T PRK06931 215 FIEDVESGVRKPAAVILEAIQGEGGVNPAPVEWLQKIREVTQKHGILLIVDEVQ----AGFARTGKMFAFEHAGIEPDII 290 (459)
T ss_pred HHHhhhcCCCceEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecch----hcCCcCchHHHhhhcCCCCCEE
Confidence 3331 2245888888642 34566542 3899999999999999999886 445455532 27998
Q ss_pred EeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHH
Q 001989 788 HLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKG 867 (985)
Q Consensus 788 ~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eG 867 (985)
+++ |.+ ++|-| +|.++.++++ +.+... ...+++.|+++.++++.+.|..+..++
T Consensus 291 t~g--K~l----~gG~P-i~av~~~~~~-~~~~~~------------------~~~~T~~gnpla~aaala~L~~l~~~~ 344 (459)
T PRK06931 291 VMS--KAV----GGGLP-LAVLGIKKEF-DAWQPG------------------GHTGTFRGNQLAMATGLTTLKILKEEN 344 (459)
T ss_pred Eec--ccc----cCCcc-eeeeeeHHHH-hhccCC------------------CCCCCCCCCHHHHHHHHHHHHHHHhCC
Confidence 774 766 44445 4556666554 222110 012345567888888889999887765
Q ss_pred HHHHHHHHHHHHHHHHHHhhcc---CCee--ecCCCCceeeEEEEEecCcccc------CC---CCHHHHHHHHHHCCCc
Q 001989 868 LTEASKIAILNANYMAKRLEKH---YPIL--FRGVNGTVAHEFIVDLRGLKNT------AG---IEPEDVAKRLMDYGFH 933 (985)
Q Consensus 868 l~~~~~~~~~~a~~l~~~L~~g---~~l~--~~~~~~~~~~~~iv~~~~~~~~------~g---~~~~~v~~~L~~~Gi~ 933 (985)
+. ++..+..++|.++|++. ++++ +.+. + .+. -+.+..-... .. .-...+.+.|.++|++
T Consensus 345 l~---~~~~~~G~~l~~~L~~l~~~~~~i~~vrG~-G-lm~--giel~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gvl 417 (459)
T PRK06931 345 LA---QNAAERGEWLKAQLAELQKRYPCIGNVRGR-G-LMI--GIEIVDERQPADAMGSYPADGELAAAIQKACFENGLL 417 (459)
T ss_pred HH---HHHHHHHHHHHHHHHHHHHhCCCeEeEecC-c-eEE--EEEEccCcccccccccCCccHHHHHHHHHHHHHCCcE
Confidence 54 45667778888888652 2321 1121 2 221 2222100000 00 0134677788899998
Q ss_pred cCCCCCCCCCEEEEeccCCCCHHHHHHHHccCChhHHHHhh
Q 001989 934 GPTMSWPVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRL 974 (985)
Q Consensus 934 ~~~~~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~ 974 (985)
+..... ..+.+|+.|+...|++|||. +++++++++..+
T Consensus 418 ~~~~~~-~~~~l~~~Ppl~it~~eid~--~~~~l~~~l~~~ 455 (459)
T PRK06931 418 LERGGR-NGNVVRLLPPLLITQAECEE--FIDRFEQALLAA 455 (459)
T ss_pred EeecCC-CCCEEEEECCCCcCHHHHHH--HHHHHHHHHHHH
Confidence 743211 14789999999999999999 889999888764
|
|
| >PRK07503 methionine gamma-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.8e-14 Score=165.40 Aligned_cols=212 Identities=19% Similarity=0.195 Sum_probs=147.1
Q ss_pred HHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHH----HHHHCCcEEEEEcC
Q 001989 634 FNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPA----TAAMCGMKIVSVGT 709 (985)
Q Consensus 634 ~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~----~a~~~G~~vv~v~~ 709 (985)
..++++.+++++|.+.. +.+++|+.|...++.++ ..+||+||++...|+.... .+...|++++.++.
T Consensus 67 ~~~le~~lA~l~g~~~~-i~~~sG~~Al~~~l~~l--------l~~Gd~Viv~~~~y~~t~~~~~~~~~~~G~~v~~vd~ 137 (403)
T PRK07503 67 LALLEQRMASLEGGEAA-VALASGMGAITATLWTL--------LRPGDEVIVDQTLYGCTFAFLHHGLGEFGVTVRHVDL 137 (403)
T ss_pred HHHHHHHHHHHhCCCcE-EEEcCHHHHHHHHHHHH--------cCCCCEEEEccCccchHHHHHHHHHhhCCEEEEEeCC
Confidence 45788999999998764 55667887664444322 1478999998877764322 24568999999987
Q ss_pred CCCCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCccCCcEEE
Q 001989 710 DAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIGADVCH 788 (985)
Q Consensus 710 d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~g~Di~~ 788 (985)
+ |+++++++++ ++|++|++++| |++|.+. |+++|+++|+++|+++++|+++..+. ...|..+++|+++
T Consensus 138 ~-----d~~~l~~~i~---~~tklV~le~p~NPtG~~~-di~~I~~la~~~gi~lIvD~a~a~~~--~~~~l~~g~Di~v 206 (403)
T PRK07503 138 T-----DPAALKAAIS---DKTRMVYFETPANPNMRLV-DIAAVAEIAHGAGAKVVVDNTYCTPY--LQRPLELGADLVV 206 (403)
T ss_pred C-----CHHHHHHhcC---ccCcEEEEeCCCCCCCeee-CHHHHHHHHHHcCCEEEEECCCcccc--cCCchhhCCCEEE
Confidence 4 8999999997 78999999998 5799998 89999999999999999999985332 2345567899999
Q ss_pred eCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHHH
Q 001989 789 LNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGL 868 (985)
Q Consensus 789 ~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl 868 (985)
.|++|+++.+ |+..+|+++.++++...+... +. + ..++...+ + ..+|..+. +-+-+
T Consensus 207 ~S~tK~l~g~---gd~~gG~v~~~~~l~~~l~~~--~~--------~-~~~g~~~s-----~---~~a~l~l~--~L~tl 262 (403)
T PRK07503 207 HSATKYLGGH---GDITAGLVVGGKALADRIRLE--GL--------K-DMTGAVMS-----P---FDAFLLMR--GLKTL 262 (403)
T ss_pred ccccccccCC---CceeEEEEEcCHHHHHHHHhh--hH--------H-hCcCCCCC-----H---HHHHHHHc--CcchH
Confidence 9999998521 223478888777665544211 00 0 01111111 1 11233333 33445
Q ss_pred HHHHHHHHHHHHHHHHHhhcc
Q 001989 869 TEASKIAILNANYMAKRLEKH 889 (985)
Q Consensus 869 ~~~~~~~~~~a~~l~~~L~~g 889 (985)
..+.++..+++..+.+.|++.
T Consensus 263 ~~r~~~~~~na~~~a~~L~~~ 283 (403)
T PRK07503 263 ALRMDRHCASAQAVAEWLARH 283 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHhC
Confidence 566677788999999999863
|
|
| >PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.63 E-value=6.3e-14 Score=163.07 Aligned_cols=144 Identities=22% Similarity=0.259 Sum_probs=115.5
Q ss_pred HHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeC-c---
Q 001989 213 LLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSD-L--- 288 (985)
Q Consensus 213 i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~-~--- 288 (985)
..++++.+|++.|.+ ....+.+|++++.++++++ + ++||+||++...|.++...+...++..|++++++| .
T Consensus 71 ~~~le~~la~l~g~~--~~v~fsSG~~Ai~~al~~l-l--~~Gd~VI~~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~~d~ 145 (437)
T PRK05613 71 VEALENRIASLEGGV--HAVAFASGQAAETAAILNL-A--GAGDHIVTSPRLYGGTETLFLVTLNRLGIEVTFVENPDDP 145 (437)
T ss_pred HHHHHHHHHHHhCCC--eEEEeCCHHHHHHHHHHHh-c--CCCCEEEECCCccHHHHHHHHHHHHhcCeEEEEECCCCCH
Confidence 556889999999985 3667777777777766654 2 38999999999999987666555667899999986 3
Q ss_pred hhhhc-cCCCEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCCCCCcccceEEEecCcccccc
Q 001989 289 KDIDY-KSGDVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKPPGELGADIVVGSAQRFGVP 362 (985)
Q Consensus 289 ~~l~~-l~~~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~~~~~~GaDi~v~s~k~lg~P 362 (985)
+++++ ++++|++|++.++ |.+|.+.||++|+++||++|++++||+ .++.|.+..|.++|+|++++|++|+.++
T Consensus 146 e~l~~~l~~~tk~V~~e~~~Np~~~v~di~~I~~la~~~gi~livD~-t~a~g~~~~p~~~GaDivv~S~~K~l~G 220 (437)
T PRK05613 146 ESWQAAVQPNTKAFFGETFANPQADVLDIPAVAEVAHRNQVPLIVDN-TIATAALVRPLELGADVVVASLTKFYTG 220 (437)
T ss_pred HHHHHhCCccCeEEEEECCCCCCCcccCHHHHHHHHHHcCCeEEEEC-CCccccccChHHhCCCEEEeeccceecC
Confidence 45666 8889998888765 889999999999999999999999953 5566766778899999999999445333
|
|
| >PTZ00433 tyrosine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=7.9e-14 Score=162.73 Aligned_cols=307 Identities=11% Similarity=0.068 Sum_probs=181.5
Q ss_pred hhHHHHHHHHHHHHHHHhC--------CCccceecCcH-HHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHH
Q 001989 628 QGYQEMFNNLGEWLCTITG--------FDSFSLQPNAG-AAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAA 698 (985)
Q Consensus 628 ~G~~~~~~e~~~~la~l~G--------~~~~~~~~~sG-a~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~ 698 (985)
+|..++.+.+.+++.+.++ .+...+..++| +++... +++.+. .++++|+++.+.|..+...++
T Consensus 75 ~G~~~Lr~aia~~~~~~~~~~~~~~~~~~~~~i~it~G~~~al~~---~~~~~~-----~~gd~vlv~~P~y~~~~~~~~ 146 (412)
T PTZ00433 75 VGSPEAREAVATYWRNSFVHKESLKSTIKKDNVVLCSGVSHAILM---ALTALC-----DEGDNILVPAPGFPHYETVCK 146 (412)
T ss_pred CCcHHHHHHHHHHHHhhccccccccCCCChhhEEEeCChHHHHHH---HHHHhc-----CCCCEEEEccCCcccHHHHHH
Confidence 5655555555555544332 33444545444 445433 333321 467899999988878878888
Q ss_pred HCCcEEEEEcCCC--CCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccc--cCHHHHHHHHHHcCCEEEEEccccccc
Q 001989 699 MCGMKIVSVGTDA--KGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYE--EGIDEICKIIHDNGGQVYMDGANMNAQ 773 (985)
Q Consensus 699 ~~G~~vv~v~~d~--~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~--~di~eI~~la~~~galliVD~a~~~~~ 773 (985)
..|++++.+|.++ ++.+|+++|+++++ +++++|++++| |++|.+. .++++|.++|+++|+++++|+++..-.
T Consensus 147 ~~g~~~~~i~~~~~~~~~~d~~~l~~~~~---~~~~~i~~~~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~ 223 (412)
T PTZ00433 147 AYGIEMRFYNCRPEKDWEADLDEIRRLVD---DRTKALIMTNPSNPCGSNFSRKHVEDIIRLCEELRLPLISDEIYAGMV 223 (412)
T ss_pred HcCCEEEEEecCccccCcCCHHHHHHHhc---cCceEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCCeEEEeccccccc
Confidence 9999999999854 46899999999887 68899999999 5699864 258888999999999999999874211
Q ss_pred -cC--CCCCCcc---CCcEEEeCCcccccccCCCCCCceEEEEEc-c-----cccCcCCCCccccCCCCCCCCCCCCCCC
Q 001989 774 -VG--LTSPGYI---GADVCHLNLHKTFCIPHGGGGPGMGPIGVK-K-----HLAPFLPSHPVVSTGGIPAPEKSQPLGT 841 (985)
Q Consensus 774 -~~--l~~pg~~---g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~-~-----~l~~~lp~~~~g~~~~~~~~~~~~~~~~ 841 (985)
.+ +.....+ ..-+++.|+.|+|+.| |.++|++++. + ++...+... . ....+
T Consensus 224 ~~~~~~~~~~~~~~~~~~i~~~SfSK~~~~p----GlRlG~~i~~~p~~~~~~~~~~~~~~--~-----------~~~~~ 286 (412)
T PTZ00433 224 FNGATFTSVADFDTTVPRVILGGTAKNLVVP----GWRLGWLLLVDPHGNGGDFLDGMKRL--G-----------MLVCG 286 (412)
T ss_pred cCCCCccchhhccCCCceEEEccchhhcCCC----CeeEEEEEEeCCcccHHHHHHHHHHH--h-----------hccCC
Confidence 11 0000111 1126677888888654 7899999972 2 222221100 0 00011
Q ss_pred CCCcchhhhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhccCCeeecCCCCceeeEEEEEecCccccCC-CCH
Q 001989 842 IAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAG-IEP 920 (985)
Q Consensus 842 i~s~~~g~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~g~~l~~~~~~~~~~~~~iv~~~~~~~~~g-~~~ 920 (985)
+++ ....++..++..-..+-+++..+...++.+++.+.|++...+.+..+.+..+ +.+.++.-.. .+ .+.
T Consensus 287 ~~~------~~q~a~~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~p~gg~f--~~~~l~~~~~-~~~~~~ 357 (412)
T PTZ00433 287 PCS------VVQAALGEALLNTPQEHLEQIVAKLEEGAMVLYNHIGECIGLSPTMPRGSMF--LMSRLDLEKF-RDIKSD 357 (412)
T ss_pred CCh------HHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccCCCeeEE--EEEEechhhc-CCCCCH
Confidence 111 1111112223221123344455566777888888887622222222222222 2344431000 01 246
Q ss_pred HHHHHHHHH-CCCccCCC-CCCCCCEEEEeccCCCCHHHHHHHHccCChhHHHHhhc
Q 001989 921 EDVAKRLMD-YGFHGPTM-SWPVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRLK 975 (985)
Q Consensus 921 ~~v~~~L~~-~Gi~~~~~-~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~~ 975 (985)
.+++++|.+ +||.+... .|..++++||++.. ..+++++ .++.|.+.+++.+
T Consensus 358 ~~~~~~ll~~~gV~v~pg~~f~~~~~iRis~~~--~~e~l~~--al~~l~~~~~~~~ 410 (412)
T PTZ00433 358 VEFYEKLLEEENVQVLPGEIFHMPGFTRLTISR--PVEVLRE--AVERIKAFCERHK 410 (412)
T ss_pred HHHHHHHHHhcCEEEeCccccCCCCeEEEEecC--CHHHHHH--HHHHHHHHHHHhc
Confidence 788988874 79986532 24346899999974 4788988 7788888776554
|
|
| >PRK07683 aminotransferase A; Validated | Back alignment and domain information |
|---|
Probab=99.63 E-value=7.2e-14 Score=161.74 Aligned_cols=299 Identities=15% Similarity=0.130 Sum_probs=182.2
Q ss_pred hhHHHHHHHHHHHHHHHhCC--Ccc-ceec-CcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcE
Q 001989 628 QGYQEMFNNLGEWLCTITGF--DSF-SLQP-NAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMK 703 (985)
Q Consensus 628 ~G~~~~~~e~~~~la~l~G~--~~~-~~~~-~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~ 703 (985)
+|..++.+++.+++.+..|. +.. .+.. +++++|...+ ++.+. .++++|+++.+.+..+...++..|++
T Consensus 65 ~g~~~lr~~ia~~l~~~~g~~~~~~~~I~~t~G~~~al~~~---~~~l~-----~~gd~Vl~~~p~y~~~~~~~~~~g~~ 136 (387)
T PRK07683 65 AGLLELRKAACNFVKDKYDLHYSPESEIIVTIGASEAIDIA---FRTIL-----EPGTEVILPAPIYPGYEPIIRLCGAK 136 (387)
T ss_pred CCCHHHHHHHHHHHHHHhCCCCCCCCcEEEeCChHHHHHHH---HHHhC-----CCCCEEEEcCCCccchHHHHHHcCCE
Confidence 56555555555555554454 333 4444 4445555333 33221 36789999988777777778889999
Q ss_pred EEEEcCCCC-CCCCHHHHHHHHHhcCCCEEEEEEEcCC-Cccccc--cCHHHHHHHHHHcCCEEEEEccccccc-cC-CC
Q 001989 704 IVSVGTDAK-GNINIEELRKAAEANRDNLSTLMVTYPS-THGVYE--EGIDEICKIIHDNGGQVYMDGANMNAQ-VG-LT 777 (985)
Q Consensus 704 vv~v~~d~~-g~iD~e~L~~~i~~~~~~t~~Vvv~~pn-~~G~i~--~di~eI~~la~~~galliVD~a~~~~~-~~-l~ 777 (985)
++.++.+.+ ..+|++++++.++ +++++|++.+|+ ++|.+. .++++|+++|+++|+++++|+++.... .. ..
T Consensus 137 ~~~~~~~~~~~~~~~~~l~~~~~---~~~~~i~i~~p~NPtG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~ 213 (387)
T PRK07683 137 PVFIDTRSTGFRLTAEALENAIT---EKTRCVVLPYPSNPTGVTLSKEELQDIADVLKDKNIFVLSDEIYSELVYEQPHT 213 (387)
T ss_pred EEEeecCcccCCCCHHHHHHhcC---cCceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHcCeEEEEecccccceeCCCcC
Confidence 999998654 5679999999987 678999999984 799974 258999999999999999999974211 11 00
Q ss_pred C----CCccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHH
Q 001989 778 S----PGYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALIL 853 (985)
Q Consensus 778 ~----pg~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~ 853 (985)
. ++..+-.+++.|+.|.|+.| |.++|++++++++.+.+.... .....+.+...+
T Consensus 214 ~~~~~~~~~~~vi~~~s~SK~~~~p----GlRiG~i~~~~~l~~~~~~~~--------------~~~~~~~~~~~q---- 271 (387)
T PRK07683 214 SIAHFPEMREKTIVINGLSKSHSMT----GWRIGFLFAPSYLAKHILKVH--------------QYNVTCASSISQ---- 271 (387)
T ss_pred ChhhccCCcCCeEEEeeccccccCc----cceeEEEEcCHHHHHHHHHHH--------------HhccCCCChHHH----
Confidence 0 01112347788888988654 678999999876654432110 000111111111
Q ss_pred HHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHH-HHHCC
Q 001989 854 PISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKR-LMDYG 931 (985)
Q Consensus 854 ~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~-L~~~G 931 (985)
.++...|. -+..-+++..++..++++++.+.|++ ++.+ ..+.+.++ +.+.++. .+.+..++++. |.++|
T Consensus 272 ~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~--~~~~~~~----~~~~~~~~~~~ll~~~g 342 (387)
T PRK07683 272 YAALEALT-AGKDDAKMMRHQYKKRRDYVYNRLISMGLDV--EKPTGAFY--LFPSIGH----FTMSSFDFALDLVEEAG 342 (387)
T ss_pred HHHHHHHh-CChHHHHHHHHHHHHHHHHHHHHHHHcCCcc--cCCCeeEE--EEEeccc----CCCCHHHHHHHHHHhCC
Confidence 11122222 23333444455566777888888876 3332 12222222 2334431 13456677766 46689
Q ss_pred CccCCC-CC-C-CCCEEEEeccCCCCHHHHHHHHccCChhHHHH
Q 001989 932 FHGPTM-SW-P-VPGTLMIEPTESESKSWTGIVMLSSPSEKKLH 972 (985)
Q Consensus 932 i~~~~~-~~-p-~~~~lris~t~~~t~eeId~~~~~~~l~~~~~ 972 (985)
|.+... .| + .++++||++.. +++++.. .++.|.+++.
T Consensus 343 I~v~pg~~f~~~~~~~~Ri~~~~--~~~~~~~--al~~l~~~l~ 382 (387)
T PRK07683 343 LAVVPGSAFSEYGEGYVRLSYAY--SIETLKE--GLDRLEAFLQ 382 (387)
T ss_pred EEEcCchhhCCCCCCeEEEEecC--CHHHHHH--HHHHHHHHHH
Confidence 987432 22 2 25899999974 6788888 6677777664
|
|
| >PRK07811 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.2e-13 Score=159.28 Aligned_cols=213 Identities=20% Similarity=0.209 Sum_probs=151.9
Q ss_pred HHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc---h
Q 001989 213 LLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL---K 289 (985)
Q Consensus 213 i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~---~ 289 (985)
..++++.+|++.|.+. ...+.+|++++.+++.++ . ++||+||++...|++....+...++..|++++.++. +
T Consensus 63 ~~~Le~~lA~~~g~~~--~i~~~sG~~Ai~~~l~al-l--~~Gd~Vl~~~~~y~~t~~~~~~~~~~~gi~~~~~d~~d~e 137 (388)
T PRK07811 63 RTALEEQLAALEGGAY--GRAFSSGMAATDCLLRAV-L--RPGDHIVIPNDAYGGTFRLIDKVFTRWGVEYTPVDLSDLD 137 (388)
T ss_pred HHHHHHHHHHHhCCCc--eEEeCCHHHHHHHHHHHH-h--CCCCEEEEcCCCchHHHHHHHHhCcCCCeEEEEeCCCCHH
Confidence 4467899999999886 455677888877777665 3 389999999999998887776666678999998865 4
Q ss_pred hhhc-cCCCEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCCCCCcccceEEEecC-ccccccCCCC
Q 001989 290 DIDY-KSGDVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKPPGELGADIVVGSA-QRFGVPMGYG 366 (985)
Q Consensus 290 ~l~~-l~~~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~~~~~~GaDi~v~s~-k~lg~P~~~G 366 (985)
++++ ++++|++|++.+| |++|.+.|+++|+++||++|++++|| +.++.+....|..+|+|++++|. |.|++|-
T Consensus 138 ~l~~~i~~~tklV~ie~p~NPtg~~~dl~~I~~la~~~gi~lIvD-~a~a~~~~~~p~~~gaDivv~S~sK~l~g~~--- 213 (388)
T PRK07811 138 AVRAAITPRTKLIWVETPTNPLLSITDIAALAELAHDAGAKVVVD-NTFASPYLQQPLALGADVVVHSTTKYIGGHS--- 213 (388)
T ss_pred HHHHhcCcCCeEEEEECCCCCcceecCHHHHHHHHHHcCCEEEEE-CCCCccccCCchhhCCcEEEecCceeecCCC---
Confidence 5666 7889999999998 68999999999999999999999995 45566655567788999999998 7775331
Q ss_pred CCcEEEEEEch-hhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcchHHH
Q 001989 367 GPHAAFLATSQ-EYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKT 445 (985)
Q Consensus 367 GP~~G~l~~~~-~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~ 445 (985)
+--+|++++++ ++.+++.. .+...|. + .+++ .+ |+...+.+-+..
T Consensus 214 ~~~gG~vv~~~~~l~~~~~~-------------------------~~~~~g~---~-~s~~---~a--~l~~~~L~tl~~ 259 (388)
T PRK07811 214 DVVGGALVTNDEELDEAFAF-------------------------LQNGAGA---V-PGPF---DA--YLTLRGLKTLAV 259 (388)
T ss_pred CcEEEEEEECCHHHHHHHHH-------------------------HHHhcCC---C-CCHH---HH--HHHHhccCcHHH
Confidence 11147777754 44333310 0000010 0 0111 11 223444455677
Q ss_pred HHHHHHHHHHHHHHHHhcCCCeE
Q 001989 446 IAQRVHGLAGTFALGLKKLGTVE 468 (985)
Q Consensus 446 i~~~~~~~a~~l~~~L~~~g~~~ 468 (985)
+.++..+++..+++.|++..+++
T Consensus 260 R~~~~~~na~~la~~L~~~p~v~ 282 (388)
T PRK07811 260 RMDRHSENAEAVAEFLAGHPEVS 282 (388)
T ss_pred HHHHHHHHHHHHHHHHHhCCCee
Confidence 77778889999999999885465
|
|
| >PRK08574 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=9.4e-14 Score=159.91 Aligned_cols=212 Identities=22% Similarity=0.201 Sum_probs=151.5
Q ss_pred HHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc--hh
Q 001989 213 LLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL--KD 290 (985)
Q Consensus 213 i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~--~~ 290 (985)
..++++.+|+++|.+. +.++.+|++++.+++.++ + ++||+||++...|+++...++.+ +..|+++++++. ++
T Consensus 55 ~~~lE~~lA~l~g~~~--~l~~~sG~~Ai~~~l~~l-l--~~GD~Vlv~~~~y~~~~~~~~~~-~~~g~~v~~~~~d~~~ 128 (385)
T PRK08574 55 LRPLEEALAKLEGGVD--ALAFNSGMAAISTLFFSL-L--KAGDRVVLPMEAYGTTLRLLKSL-EKFGVKVVLAYPSTED 128 (385)
T ss_pred HHHHHHHHHHHhCCCc--EEEeCCHHHHHHHHHHHH-h--CCCCEEEEcCCCchhHHHHHHHh-hccCcEEEEECCCHHH
Confidence 3457899999999864 667888998877776654 2 38999999999999999888764 567998887654 56
Q ss_pred hhc-cCC-CEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCCCCCcccceEEEecC-ccccccCCCC
Q 001989 291 IDY-KSG-DVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKPPGELGADIVVGSA-QRFGVPMGYG 366 (985)
Q Consensus 291 l~~-l~~-~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~~~~~~GaDi~v~s~-k~lg~P~~~G 366 (985)
+++ +++ +|++|++.+| |++|.+.|+++|+++||++|++++|| +.++.++...+.++|+|++++|. |+|++| |
T Consensus 129 l~~~i~~~~tklV~ie~p~NPtG~v~dl~~I~~la~~~gi~livD-~t~a~~~~~~~l~~GaDivv~S~sK~l~g~---~ 204 (385)
T PRK08574 129 IIEAIKEGRTKLVFIETMTNPTLKVIDVPEVAKAAKELGAILVVD-NTFATPLLYRPLRHGADFVVHSLTKYIAGH---N 204 (385)
T ss_pred HHHhcCccCceEEEEECCCCCCCEecCHHHHHHHHHHcCCEEEEE-CCCCccccCChhhhCCcEEEeeCceeecCC---C
Confidence 777 777 8999999887 78999999999999999999999995 45666666667789999999998 777643 2
Q ss_pred CCcEEEEEE-chhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcchHHH
Q 001989 367 GPHAAFLAT-SQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKT 445 (985)
Q Consensus 367 GP~~G~l~~-~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~ 445 (985)
..-.|.+.+ ++++.+++- ..|+..|+. .+++ .| |+...+-+-+..
T Consensus 205 d~~gG~vi~~~~~~~~~~~-------------------------~~~~~~g~~----~~p~---~a--~l~l~~l~tL~~ 250 (385)
T PRK08574 205 DVVGGVAVAWSGEFLEELW-------------------------EWRRRLGTI----MQPF---EA--YLVLRGLKTLEV 250 (385)
T ss_pred CceeEEEEECcHHHHHHHH-------------------------HHHHhcCCC----CCHH---HH--HHHHcccCcHHH
Confidence 122354444 455444330 001111110 0122 12 234445556777
Q ss_pred HHHHHHHHHHHHHHHHhcCCCeE
Q 001989 446 IAQRVHGLAGTFALGLKKLGTVE 468 (985)
Q Consensus 446 i~~~~~~~a~~l~~~L~~~g~~~ 468 (985)
+.++..+++.++.+.|++...++
T Consensus 251 R~~~~~~na~~la~~L~~~p~v~ 273 (385)
T PRK08574 251 RFERQCRNAMAIAEFLSEHPKVA 273 (385)
T ss_pred HHHHHHHHHHHHHHHHHcCCCcC
Confidence 77888899999999999875454
|
|
| >KOG0257 consensus Kynurenine aminotransferase, glutamine transaminase K [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.5e-14 Score=158.56 Aligned_cols=293 Identities=18% Similarity=0.160 Sum_probs=189.3
Q ss_pred HHHHHHHHHhccccCcccccccccccccCCCccc----ccccccc-ccccccCCCCchhhhhhHHHHHHHHHHHHHHHhC
Q 001989 572 ELLRYIHLLQSKELSLCHSMIPLGSCTMKLNATT----EMMPVTW-PSFANIHPFAPADQAQGYQEMFNNLGEWLCTITG 646 (985)
Q Consensus 572 e~~~~l~~l~~~~~~~~~~~~~lG~~t~~~~~~~----~~~~~~~-~~f~~~~p~~p~e~~~G~~~~~~e~~~~la~l~G 646 (985)
.++-++.+++.+... ..+||-|-+..++.. ++.-+.+ +....|++ .-|..++...+.+++++++|
T Consensus 18 ~vw~e~~~la~e~~~----~~~LgqGfp~~~~P~fv~ea~~~~~~~~~~~qYt~------~~G~p~L~~aL~k~~se~~~ 87 (420)
T KOG0257|consen 18 YVWTEINRLAAEHKV----PNPLGQGFPDFPPPKFVTEAAKNAAKEPSTNQYTR------GYGLPQLRKALAKAYSEFYG 87 (420)
T ss_pred cHHHHHHHHHHhcCC----CCcccCCCCCCCCcHHHHHHHHHHhccchhccccc------cCCchHHHHHHHHHHHHHhc
Confidence 566777777776632 233887766655532 1221222 23333443 24666778888899999887
Q ss_pred CCc---cceecCcHHH-HHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcCC--------CCCC
Q 001989 647 FDS---FSLQPNAGAA-GEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTD--------AKGN 714 (985)
Q Consensus 647 ~~~---~~~~~~sGa~-a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~d--------~~g~ 714 (985)
... ..+.+++|+. +..++++++. ++||+||+.++++..+-....+.|...+.|+.. .++.
T Consensus 88 ~~~~~~~eVlVT~GA~~ai~~~~~~l~--------~~GDeVii~eP~fd~Y~~~~~maG~tpv~v~~~~~~g~~~s~~~~ 159 (420)
T KOG0257|consen 88 GLLDPDDEVLVTAGANEAISSALLGLL--------NPGDEVIVFEPFFDCYIPQVVMAGGTPVFVPLKPKEGNVSSSDWT 159 (420)
T ss_pred cccCCcccEEEecCchHHHHHHHHHHc--------CCCCEEEEecCcchhhhhHHhhcCCcceeeccccccccccCcccc
Confidence 543 3466666653 5544444432 588999999987777767788999999999876 2478
Q ss_pred CCHHHHHHHHHhcCCCEEEEEEEcC-CCccccc--cCHHHHHHHHHHcCCEEEEEcccc---------ccccCCCCCCcc
Q 001989 715 INIEELRKAAEANRDNLSTLMVTYP-STHGVYE--EGIDEICKIIHDNGGQVYMDGANM---------NAQVGLTSPGYI 782 (985)
Q Consensus 715 iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~--~di~eI~~la~~~galliVD~a~~---------~~~~~l~~pg~~ 782 (985)
+|.++|+.+++ ++|++|++++| |++|.+- +.+++|+++|+++|.+++.|.++- .... ..||.+
T Consensus 160 ~D~~~le~~~t---~kTk~Ii~ntPhNPtGkvfsReeLe~ia~l~~k~~~lvisDevYe~~v~d~~~h~r~a--slPgm~ 234 (420)
T KOG0257|consen 160 LDPEELESKIT---EKTKAIILNTPHNPTGKVFSREELERIAELCKKHGLLVISDEVYEWLVYDGNKHIRIA--SLPGMY 234 (420)
T ss_pred CChHHHHhhcc---CCccEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCEEEEEhhHhHHHhhCCCcceeee--cCCchh
Confidence 99999999999 89999999999 5799884 369999999999999999998861 1111 237888
Q ss_pred CCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHH-HHH
Q 001989 783 GADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYT-YIA 861 (985)
Q Consensus 783 g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a-~l~ 861 (985)
..-+-++|+.|+|++ .||.+|+++.++++...+..-. . .....+++ +. +.+ .++|.+ .+.
T Consensus 235 ertitvgS~gKtf~~----TGWrlGW~igp~~L~~~~~~vh--~----------~~~~~~~T-p~-q~A-~a~a~~~~~~ 295 (420)
T KOG0257|consen 235 ERTITVGSFGKTFGV----TGWRLGWAIGPKHLYSALFPVH--Q----------NFVFTCPT-PI-QEA-SAAAFALELA 295 (420)
T ss_pred heEEEeccccceeee----eeeeeeeeechHHhhhhHHHHh--h----------ccccccCc-HH-HHH-HHHHHhhhhh
Confidence 888999999999964 6899999999777765432110 0 00112222 11 211 111111 111
Q ss_pred HhcHHH--H-HHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEec
Q 001989 862 MMGSKG--L-TEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLR 910 (985)
Q Consensus 862 ~lg~eG--l-~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~ 910 (985)
....+| + .++.+...++++.|.+.|.+ |+++. ++.+..+ +.++++
T Consensus 296 ~~~p~~~y~~~~~~~~y~~krdil~k~L~~lg~~v~--~p~gayy--l~adfs 344 (420)
T KOG0257|consen 296 CLQPGGSYFITELVKEYKEKRDILAKALEELGLKVT--GPEGAYY--LWADFS 344 (420)
T ss_pred ccCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccc--cCCCceE--EEEecc
Confidence 111222 2 22555678889999999988 66653 3334444 355655
|
|
| >TIGR01365 serC_2 phosphoserine aminotransferase, Methanosarcina type | Back alignment and domain information |
|---|
Probab=99.63 E-value=4.3e-14 Score=160.70 Aligned_cols=294 Identities=15% Similarity=0.080 Sum_probs=188.8
Q ss_pred HHHHHHHHHHHHHhcCCCCcc--eeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHH-HhhcCCCe-EEEE
Q 001989 210 LESLLNFQTMIADLTGLPMSN--ASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICI-TRADGFDI-KVVV 285 (985)
Q Consensus 210 l~~i~e~q~~ia~L~g~~~~~--~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~-~~a~~~gi-~v~~ 285 (985)
.+.+.+.++.+.++++.+..+ +.+..+||+++||+++.+- . ++|++|++.. .|. .-|. ..++..|+ ++..
T Consensus 38 ~~i~~e~~~~L~~l~~~~~~~~v~~l~GsGT~a~Eaa~~nl~-~-~~g~~vLv~g-~FG---~r~~~eia~~~g~~~v~~ 111 (374)
T TIGR01365 38 KEKLAEAIKKTREMLGVPADYLIGIVPASDTGAVEMALWSML-G-CRGVDVLAWE-SFG---KGWVTDVTKQLKLPDVRV 111 (374)
T ss_pred HHHHHHHHHHHHHHhCCCCCcEEEEECCchHHHHHHHHHHcC-C-CCCCeEEEEC-HHH---HHHHHHHHHhcCCCCcEE
Confidence 577888889999999985432 5567899999999998652 1 2678888864 443 3322 33555677 3555
Q ss_pred eCch-----hhhccCCCEeEEEEEc-CCCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCCCCCcccceEEEecC-cc
Q 001989 286 SDLK-----DIDYKSGDVCGVLVQY-PGTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKPPGELGADIVVGSA-QR 358 (985)
Q Consensus 286 v~~~-----~l~~l~~~t~~V~v~~-pn~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~~~~~~GaDi~v~s~-k~ 358 (985)
++.+ +++++..+ +.|++++ -+++|+..|+++|++.. ++++++||+ ..++|...-.-+ ++|+++.++ |.
T Consensus 112 l~~~~g~~~~~~~ve~~-~~v~~vhnETSTGv~npv~~i~~~~--~~~lliVDa-vSs~g~~~l~~d-~iDv~~tgsQK~ 186 (374)
T TIGR01365 112 LEAEYGKLPDLKKVDFK-NDVVFTWNGTTSGVRVPNGDFIPAD--REGLTICDA-TSAAFAQDLDYH-KLDVVTFSWQKV 186 (374)
T ss_pred EcCCCCCCCCHHHcCCC-CCEEEecCCCchheecccccccccc--CCCcEEEEc-cchhcCCCCChh-HCcEEEEechhc
Confidence 5331 12223222 2255555 58899999998777433 488999964 456665432222 599999999 77
Q ss_pred ccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeeccccc---ccccccccCCCccchhHHHHHHHHHHH
Q 001989 359 FGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTRE---QHIRRDKATSNICTAQALLANMAAMYA 435 (985)
Q Consensus 359 lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre---~~irre~atsni~t~~~l~a~~aa~~l 435 (985)
|++| ||++|+.++++.+++...+--- .| -+. .+.+.... .+.+ ..-|.|......++++..++
T Consensus 187 L~~p-----pGls~v~vs~~Al~~~~~~~~y--~~---~~~-~~~~~~~~~~~~~~~-~~~t~~TP~v~~l~a~~~~l-- 252 (374)
T TIGR01365 187 LGGE-----GAHGMLILSPRAVARLESYTPA--WP---LPK-IFRLTKGGKLNKKIF-EGSTINTPSMLCVEDWLDAL-- 252 (374)
T ss_pred cCCC-----CceEEEEECHHHHHHHhhcCCC--CC---Chh-hhccccccchhhhhh-cCCCCCChHHHHHHHHHHHH--
Confidence 8766 7899999999988765311000 00 000 12211100 0111 12356655445555554444
Q ss_pred HHhCcc-hHHHHHHHHHHHHHHHHHHHhcCCCeEEcCC---CCcce-EEEec--C-------C-----HHHHHHHHHHcC
Q 001989 436 VYHGPE-GLKTIAQRVHGLAGTFALGLKKLGTVEVQGL---PFFDT-VKVKC--A-------D-----AHAIASAAYKIE 496 (985)
Q Consensus 436 ~~~g~~-Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~---~~~~~-~~~~~--~-------~-----~~~v~~~L~~~G 496 (985)
.++..+ |++++.+|+.+++++++++++++|.++++.. ...++ +++.. + + +.++.+.|.++|
T Consensus 253 ~~i~~egGle~~~~Rh~~~a~~l~~~l~~lg~l~~~~~~~~~rS~tvt~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g 332 (374)
T TIGR01365 253 KWAESIGGLKPLIARADDNLAVLEAFVAKNNWIHFLAETPEIRSNTSVCLKVVDPAIDALDEDAQADFAKELISTLEKEG 332 (374)
T ss_pred HHHHHccCHHHHHHHHHHHHHHHHHHHHHCCCcccCCCChhhcCCCeEEEEeCCccccccccchhhHHHHHHHHHHHHCC
Confidence 445554 8999999999999999999999974666642 12332 22333 2 1 478899999999
Q ss_pred ceeee----ecCCeEEEEeccCCCHHHHHHHHHHHh
Q 001989 497 MNLRV----VDSNTVTASFDETTTLEDVDKLFIVFA 528 (985)
Q Consensus 497 I~~~~----~~~~~lris~t~~~t~edId~li~aL~ 528 (985)
|.+.. ..+..+||.-.-..+.+||++|+++|.
T Consensus 333 i~i~~G~~~~~~~~fRIg~~G~i~~~di~~l~~~l~ 368 (374)
T TIGR01365 333 VAYDIGSYRDAPSGLRIWCGATVEKSDLECLCPWLD 368 (374)
T ss_pred EEEeccccccCCCceEEecCCcCCHHHHHHHHHHHH
Confidence 97642 124779999999999999999999885
|
This model represents a variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in a small number of distantly related species, including Caulobacter crescentus, Mesorhizobium loti, and the archaeon Methanosarcina barkeri. |
| >PRK02627 acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.2e-13 Score=160.50 Aligned_cols=294 Identities=20% Similarity=0.209 Sum_probs=179.9
Q ss_pred HHHHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEE-cCCCCcccHHHHHHCCcEEE---EE
Q 001989 632 EMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCII-PVSAHGTNPATAAMCGMKIV---SV 707 (985)
Q Consensus 632 ~~~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv-~~~~Hg~~~~~a~~~G~~vv---~v 707 (985)
....+++++++++.|.+. .++.+||++|+++++.+++.+....+. .+++|++ ...+||.........+.... ..
T Consensus 81 ~~~~~la~~l~~~~~~~~-v~~~~gg~eA~~~al~~a~~~~~~~~~-~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~ 158 (396)
T PRK02627 81 EPQEELAEKLVELSGMDK-VFFCNSGAEANEAAIKLARKYGHKKGI-EKPEIITAENSFHGRTLATLSATGQPKYQEGFE 158 (396)
T ss_pred HHHHHHHHHHHhhcCCCE-EEECCCcHHHHHHHHHHHHHHhcccCC-CCCeEEEECCCcCcccHHHHHhcCCccccccCC
Confidence 345678889999888754 466788999998888877765321111 2256766 55678876655444332211 11
Q ss_pred cCCCCC----CCCHHHHHHHHHhcCCCEEEEEEEcCC-Cccccc---cCHHHHHHHHHHcCCEEEEEccccccccCCC--
Q 001989 708 GTDAKG----NINIEELRKAAEANRDNLSTLMVTYPS-THGVYE---EGIDEICKIIHDNGGQVYMDGANMNAQVGLT-- 777 (985)
Q Consensus 708 ~~d~~g----~iD~e~L~~~i~~~~~~t~~Vvv~~pn-~~G~i~---~di~eI~~la~~~galliVD~a~~~~~~~l~-- 777 (985)
+...+. ..|++++++++. +++++|+++.++ .+|... ..+++|.++|+++|+++++|+++. +++-..
T Consensus 159 ~~~~~~~~~~~~d~~~l~~~i~---~~~~~vii~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DE~~~-g~g~~g~~ 234 (396)
T PRK02627 159 PLVEGFIYVPFNDIEALKAAIT---DKTAAVMLEPIQGEGGVNPADKEYLQALRELCDENGILLILDEVQT-GMGRTGKL 234 (396)
T ss_pred CCCCCceEeCCCCHHHHHHhcC---CCeEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhc-CCCccCce
Confidence 111111 238999999996 789999998763 566432 248999999999999999999874 221100
Q ss_pred -CCCcc--CCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHH
Q 001989 778 -SPGYI--GADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILP 854 (985)
Q Consensus 778 -~pg~~--g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~ 854 (985)
..... .+|++++ .|.++ +|..+|++++++++.+.+.... ...+ +.+++..+.
T Consensus 235 ~~~~~~~~~pdi~t~--sK~~~-----~G~rig~~~~~~~~~~~~~~~~--------------~~~t----~~~~~~~~~ 289 (396)
T PRK02627 235 FAYQHYGIEPDIMTL--AKGLG-----GGVPIGAVLAKEKVADVFTPGD--------------HGST----FGGNPLACA 289 (396)
T ss_pred eeehhcCCCCCEEEE--cchhh-----CCcccEEEEEcHHHHhccCCCC--------------CCCC----CCCCHHHHH
Confidence 01112 3577654 47774 4567899998887765542110 0011 112334445
Q ss_pred HHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhcc---CCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCC
Q 001989 855 ISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKH---YPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYG 931 (985)
Q Consensus 855 ~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~g---~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~G 931 (985)
++.+.|..+..+++ .++..++.++++++|.+. ++..........+ +.+.+. .+..+++++|.++|
T Consensus 290 aa~~~l~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~--~~i~~~-------~~~~~~~~~l~~~G 357 (396)
T PRK02627 290 AALAVIEIIEEEGL---LENAAEVGEYLRAKLRELLEKYPGIKEVRGLGLM--IGIELD-------RPAAEIVKKALEKG 357 (396)
T ss_pred HHHHHHHHHhhccH---HHHHHHHHHHHHHHHHHHHHhCCCeeeeccCcEE--EEEEec-------CcHHHHHHHHHHCC
Confidence 55566665544333 345556667777776541 2211110001111 233332 25788999999999
Q ss_pred CccCCCCCCCCCEEEEeccCCCCHHHHHHHHccCChhHHHHh
Q 001989 932 FHGPTMSWPVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHR 973 (985)
Q Consensus 932 i~~~~~~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~ 973 (985)
+.+.... .+.+|++|+...+++||++ +++.|++++++
T Consensus 358 v~v~~~~---~~~lRi~~~~~~~~~~i~~--~~~~l~~~l~~ 394 (396)
T PRK02627 358 LLINVTG---DNVLRLLPPLIISKEEIDE--AVDRLEEVLKE 394 (396)
T ss_pred eEEeecC---CCEEEEECCcccCHHHHHH--HHHHHHHHHHh
Confidence 9875432 3689999998999999999 77888887764
|
|
| >PRK06348 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.1e-13 Score=160.01 Aligned_cols=297 Identities=13% Similarity=0.128 Sum_probs=178.7
Q ss_pred hhHHHHHHHHHHHHHHHhCC--CccceecCcHH-HHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEE
Q 001989 628 QGYQEMFNNLGEWLCTITGF--DSFSLQPNAGA-AGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKI 704 (985)
Q Consensus 628 ~G~~~~~~e~~~~la~l~G~--~~~~~~~~sGa-~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~v 704 (985)
+|..++.+.+.+++.+..|. +..++..++|+ +|.. .+++.+. .++++|+++++.|+.+...++..|.++
T Consensus 66 ~G~~~lr~~ia~~~~~~~~~~~~~~~i~it~G~~~al~---~~~~~~~-----~~gd~vlv~~p~y~~~~~~~~~~g~~~ 137 (384)
T PRK06348 66 GGDVELIEEIIKYYSKNYDLSFKRNEIMATVGACHGMY---LALQSIL-----DPGDEVIIHEPYFTPYKDQIEMVGGKP 137 (384)
T ss_pred CCcHHHHHHHHHHHHHHhCCCCChhhEEEcCChHHHHH---HHHHHhc-----CCCCEEEEeCCCCcchHHHHHHcCCEE
Confidence 56555555556666555454 34455554454 4443 3333321 467899999988877777888899999
Q ss_pred EEEcCCC--CCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccc--cCHHHHHHHHHHcCCEEEEEccccccc-cC-CC
Q 001989 705 VSVGTDA--KGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYE--EGIDEICKIIHDNGGQVYMDGANMNAQ-VG-LT 777 (985)
Q Consensus 705 v~v~~d~--~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~--~di~eI~~la~~~galliVD~a~~~~~-~~-l~ 777 (985)
+.+|.++ ++.+|+++|+++++ +++++|++++| |++|.+. .++++|.++|+++|+++++|.++..-. .. ..
T Consensus 138 ~~~~~~~~~~~~~d~~~l~~~~~---~~~~~v~l~~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~ 214 (384)
T PRK06348 138 IILETYEEDGFQINVKKLEALIT---SKTKAIILNSPNNPTGAVFSKETLEEIAKIAIEYDLFIISDEVYDGFSFYEDFV 214 (384)
T ss_pred EEecCCcCcCCcCCHHHHHHhhC---cCccEEEEeCCCCCCCcCCCHHHHHHHHHHHHHCCeEEEEecccccceeCCCcc
Confidence 9998742 35699999999987 67889999998 4799885 248899999999999999999874211 11 00
Q ss_pred C----CCccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHH
Q 001989 778 S----PGYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALIL 853 (985)
Q Consensus 778 ~----pg~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~ 853 (985)
. .+..+-.+++.|+.|+|++| |.++|++++++++...+.... .....+.+..++.
T Consensus 215 ~~~~~~~~~~~vi~~~SfSK~~~l~----GlRiG~~v~~~~~~~~~~~~~--------------~~~~~~~~~~~q~--- 273 (384)
T PRK06348 215 PMATLAGMPERTITFGSFSKDFAMT----GWRIGYVIAPDYIIETAKIIN--------------EGICFSAPTISQR--- 273 (384)
T ss_pred chhhcCCCcCcEEEEecchhccCCc----cccceeeecCHHHHHHHHHHH--------------HhccCCCCHHHHH---
Confidence 1 01112346777888988654 678999999876654432100 0001111111121
Q ss_pred HHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhccCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHH-HCCC
Q 001989 854 PISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLM-DYGF 932 (985)
Q Consensus 854 ~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~-~~Gi 932 (985)
++..++.. ..+-+++..+...++.+++.+.|++...+.+..+.+.++ +.++++. .+.+..++++.|. ++||
T Consensus 274 -~~~~~l~~-~~~~~~~~~~~~~~r~~~~~~~L~~~~~~~~~~p~gg~~--~~~~~~~----~~~~~~~l~~~l~~~~gv 345 (384)
T PRK06348 274 -AAIYALKH-RDTIVPLIKEEFQKRLEYAYKRIESIPNLSLHPPKGSIY--AFINIKK----TGLSSVEFCEKLLKEAHV 345 (384)
T ss_pred -HHHHHHhC-cHHHHHHHHHHHHHHHHHHHHHHhcCCCceeccCCeeEE--EEEeccc----CCCCHHHHHHHHHHhCCE
Confidence 11222321 222234444455667788888887621222222223222 3445431 1456788998876 5699
Q ss_pred ccCC-CCCC--CCCEEEEeccCCCCHHHHHHHHccCChh
Q 001989 933 HGPT-MSWP--VPGTLMIEPTESESKSWTGIVMLSSPSE 968 (985)
Q Consensus 933 ~~~~-~~~p--~~~~lris~t~~~t~eeId~~~~~~~l~ 968 (985)
.+.. ..|. ..+++||+++ .+.++++. .++.|+
T Consensus 346 ~v~pg~~f~~~~~~~iRi~~~--~~~~~l~~--al~~l~ 380 (384)
T PRK06348 346 LVIPGKAFGESGEGYIRLACT--VGIEVLEE--AFNRIE 380 (384)
T ss_pred EEcCchhhccCCCCeEEEEec--CCHHHHHH--HHHHHH
Confidence 8653 2232 2479999985 47788777 444443
|
|
| >PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.62 E-value=4.3e-14 Score=163.48 Aligned_cols=295 Identities=18% Similarity=0.137 Sum_probs=189.6
Q ss_pred HHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc----
Q 001989 213 LLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL---- 288 (985)
Q Consensus 213 i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~---- 288 (985)
+.++++.+|++.|.+. +..+.+|++|+.++++++ + ++||+||++...|..+...+....+..|+++++++.
T Consensus 63 v~~lE~~la~leg~~~--av~~~SG~aAi~~al~al-l--~~GD~VI~~~~~Y~~T~~~~~~~l~~~Gi~v~~vd~~~d~ 137 (432)
T PRK06702 63 LAAFEQKLAELEGGVG--AVATASGQAAIMLAVLNI-C--SSGDHLLCSSTVYGGTFNLFGVSLRKLGIDVTFFNPNLTA 137 (432)
T ss_pred HHHHHHHHHHHhCCCc--EEEECCHHHHHHHHHHHh-c--CCCCEEEECCCchHHHHHHHHHHHHHCCCEEEEECCCCCH
Confidence 4457899999999876 677999999998888765 3 389999999999988888766555678999999875
Q ss_pred hhhhc-cCCCEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCCCCCcccceEEEecC-ccccccCCC
Q 001989 289 KDIDY-KSGDVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKPPGELGADIVVGSA-QRFGVPMGY 365 (985)
Q Consensus 289 ~~l~~-l~~~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~~~~~~GaDi~v~s~-k~lg~P~~~ 365 (985)
+++++ ++++|++|++.+| |+++.+.|+++|+++||++|+++++| +.++.+.+..|.++||||++.|. |.++++-
T Consensus 138 ~~l~~~I~~~Tk~I~~e~pgnP~~~v~Di~~I~~iA~~~gi~livD-~T~~tP~~~~pl~~GADIvv~S~TKy~~Ghs-- 214 (432)
T PRK06702 138 DEIVALANDKTKLVYAESLGNPAMNVLNFKEFSDAAKELEVPFIVD-NTLATPYLCQAFEHGANIIVHSTTKYIDGHA-- 214 (432)
T ss_pred HHHHHhCCcCCeEEEEEcCCCccccccCHHHHHHHHHHcCCEEEEE-CCCCchhhCChhhcCCCEEEEccccccCCCc--
Confidence 46777 8999999999887 88999999999999999999999995 45566667778899999999998 8887642
Q ss_pred CCCcEEEEEEchhhHhcCC--CceeeeeecCCCCcceeeeccc---cc-------ccccccccCCCccchhHHHHHHHHH
Q 001989 366 GGPHAAFLATSQEYKRMMP--GRIVGVSIDSSGKPALRVAMQT---RE-------QHIRRDKATSNICTAQALLANMAAM 433 (985)
Q Consensus 366 GGP~~G~l~~~~~~~~~lp--~~~vG~t~d~~g~~~~~l~l~t---re-------~~irre~atsni~t~~~l~a~~aa~ 433 (985)
+--.|.+..+..+-..-. ..++- .| ... +.+.+.. |. ...+|.-| .| .+++ ..
T Consensus 215 -d~l~G~v~~~~~~~w~~~~~~~l~~--~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g---~~-~sp~-----~a 279 (432)
T PRK06702 215 -SSLGGIVIDGGNFDWTNGKYPELVE--PD--PSY-HGVSYVQNFGAAAYIVKARVQLLRDYG---NC-MSPF-----NA 279 (432)
T ss_pred -ceeceEEEeCCCccccccccccccc--cc--ccc-cccchhhccchhhHHHHHHHHHHHHcc---CC-CCHH-----HH
Confidence 112233332222110000 00000 00 000 0000000 00 01111112 11 1222 12
Q ss_pred HHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEc-CC-----C------------CcceEEEecCC----HHHHHHH
Q 001989 434 YAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQ-GL-----P------------FFDTVKVKCAD----AHAIASA 491 (985)
Q Consensus 434 ~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~-~~-----~------------~~~~~~~~~~~----~~~v~~~ 491 (985)
|+...|-+-++.+.++..+++..+++.|++.+.++.+ .+ + +...|+|.+++ +.++.+.
T Consensus 280 ~l~~rgL~Tl~lR~~r~~~Na~~la~~L~~~p~V~~V~yPgl~~~p~~~l~~~~~~~g~gg~~sf~l~~~~~~~~~f~~~ 359 (432)
T PRK06702 280 YISNIGLETLHLRMERHSENALAVAKWLADHERIEWVNYPGLDSNENYSLAQKYLKKGASGVLTFGIKGGLEAAKEFIAN 359 (432)
T ss_pred HHHHhccCcHHHHHHHHHHHHHHHHHHHHhCCCcceEECCCCCCCccHHHHHHhCcCCCceEEEEEecCCHHHHHHHHHh
Confidence 3466677778888889999999999999988545532 11 1 11246777653 3344444
Q ss_pred HHHc--Ccee---ee----------------------ecCCeEEEEeccCCCHHHHHHHHHHHhCC
Q 001989 492 AYKI--EMNL---RV----------------------VDSNTVTASFDETTTLEDVDKLFIVFAGG 530 (985)
Q Consensus 492 L~~~--GI~~---~~----------------------~~~~~lris~t~~~t~edId~li~aL~~~ 530 (985)
|.=- +..+ +. +.++.||+|++.-+.++=|+.|.++|...
T Consensus 360 l~l~~~a~slGg~~Slv~~p~~~th~~~~~~~~~~~Gi~~~liRlSvGlEd~eDLi~Dl~~Al~~~ 425 (432)
T PRK06702 360 VKLATLVTHVADARTCVIHPASTTHRQLSAEDQRLAGVTSDLIRLSVGIEDVSDIIADLEAALVGG 425 (432)
T ss_pred CccceeccccCCCCcceECCCCCCcccCCHHHHHhcCCCCCeEEEEeccCCHHHHHHHHHHHHhcC
Confidence 4311 1111 00 11367999999876666667777788755
|
|
| >PRK09148 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.62 E-value=9.4e-14 Score=161.70 Aligned_cols=304 Identities=13% Similarity=0.078 Sum_probs=182.5
Q ss_pred hhHHHHHHHHHHHHHHHhCCC--cc-ceecCcHHH-HHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcE
Q 001989 628 QGYQEMFNNLGEWLCTITGFD--SF-SLQPNAGAA-GEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMK 703 (985)
Q Consensus 628 ~G~~~~~~e~~~~la~l~G~~--~~-~~~~~sGa~-a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~ 703 (985)
+|..++.+.+.+++.+.+|.+ .. .+..++|++ |.... ++.+. .++|+|+++++.+..+...+...|++
T Consensus 68 ~G~~~lr~aia~~~~~~~g~~~~~~~~I~it~G~~~al~~~---~~~l~-----~~gd~Vl~~~P~y~~~~~~~~~~g~~ 139 (405)
T PRK09148 68 KGIPGLRRAQAAYYARRFGVKLNPDTQVVATLGSKEGFANM---AQAIT-----APGDVILCPNPSYPIHAFGFIMAGGV 139 (405)
T ss_pred CCCHHHHHHHHHHHHHHhCCCCCCCCcEEEcCChHHHHHHH---HHHhc-----CCCCEEEEcCCCCcccHHHHHhcCCE
Confidence 576666666667776666753 33 455555544 44332 33321 46889999998887777777889999
Q ss_pred EEEEcCCCCCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCcccccc--CHHHHHHHHHHcCCEEEEEccccccc-cC--CC
Q 001989 704 IVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEE--GIDEICKIIHDNGGQVYMDGANMNAQ-VG--LT 777 (985)
Q Consensus 704 vv~v~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~--di~eI~~la~~~galliVD~a~~~~~-~~--l~ 777 (985)
++.+|.+.++. ++++++++++.+.+++++|++++| |++|.+.+ .+++|.++|+++|+++++|+++..-. .. ..
T Consensus 140 v~~v~~~~~~~-~~~~l~~~~~~~~~~~~~v~l~~P~NPtG~~~s~~~l~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~ 218 (405)
T PRK09148 140 IRSVPAEPDEE-FFPALERAVRHSIPKPIALIVNYPSNPTAYVADLDFYKDVVAFAKKHDIIILSDLAYSEIYFDGNPPP 218 (405)
T ss_pred EEEEeCCCCCC-CccCHHHHHhhccccceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHcCeEEEEeccchhhhcCCCCCC
Confidence 99999865432 355566666544468899999998 57999872 25788999999999999999874211 01 11
Q ss_pred CCCc----cCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHH
Q 001989 778 SPGY----IGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALIL 853 (985)
Q Consensus 778 ~pg~----~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~ 853 (985)
.... .+..+++.|++|.|+.| |.++|++++++++...+... . ...+.+.+...+
T Consensus 219 s~~~~~~~~~~~i~~~SfSK~~~~p----GlR~G~~v~~~~~i~~l~~~-~-------------~~~~~~~~~~~q---- 276 (405)
T PRK09148 219 SVLQVPGAKDVTVEFTSMSKTFSMA----GWRMGFAVGNERLIAALTRV-K-------------SYLDYGAFTPIQ---- 276 (405)
T ss_pred ChhhCCCccCcEEEEeccccccCCc----chheeeeeCCHHHHHHHHHH-H-------------HHhccCCChHHH----
Confidence 1111 12235678999998655 67899999887765444210 0 000111110111
Q ss_pred HHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHH-HCC
Q 001989 854 PISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLM-DYG 931 (985)
Q Consensus 854 ~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~-~~G 931 (985)
.++...+. -..+-+++..+...++.+++.+.|++ ++.+ ..+.+..+ +.++++... .+.+..++++.|. ++|
T Consensus 277 ~~~~~~L~-~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~--~~p~~g~f--~~~~l~~~~--~~~~~~~~~~~ll~~~g 349 (405)
T PRK09148 277 VAATAALN-GPQDCIAEMRELYKKRRDVLVESFGRAGWDI--PPPAASMF--AWAPIPEAF--RHLGSLEFSKLLVEKAD 349 (405)
T ss_pred HHHHHHHh-CcHHHHHHHHHHHHHHHHHHHHHHHHcCCcc--CCCCeeEE--EEEECCCcc--CCCCHHHHHHHHHHhCC
Confidence 11122222 12333445555667788888888876 4332 22223222 345554100 0124578888776 679
Q ss_pred CccCC-CCCC--CCCEEEEeccCCCCHHHHHHHHccCChhHHHHh
Q 001989 932 FHGPT-MSWP--VPGTLMIEPTESESKSWTGIVMLSSPSEKKLHR 973 (985)
Q Consensus 932 i~~~~-~~~p--~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~ 973 (985)
|.+.. ..|+ .++++||++. .+.++++. .++.|.+++++
T Consensus 350 V~v~pg~~f~~~~~~~~Ri~~~--~~~~~l~~--al~~l~~~l~~ 390 (405)
T PRK09148 350 VAVAPGVGFGEHGDGYVRIALV--ENEQRIRQ--AARNIKRFLSS 390 (405)
T ss_pred EEEeCchhhCCCCCCeEEEEec--CCHHHHHH--HHHHHHHHHHH
Confidence 98653 2233 2478999986 46788777 56666666654
|
|
| >PLN02242 methionine gamma-lyase | Back alignment and domain information |
|---|
Probab=99.62 E-value=8.1e-14 Score=161.83 Aligned_cols=218 Identities=18% Similarity=0.151 Sum_probs=154.1
Q ss_pred HHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHh-hcCCCeEEEEeCc--
Q 001989 212 SLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITR-ADGFDIKVVVSDL-- 288 (985)
Q Consensus 212 ~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~-a~~~gi~v~~v~~-- 288 (985)
...++++.+|+++|.+. +.++.+|++++.++++++ . ++||+||++...|+.+...+... .+..|+++++++.
T Consensus 77 t~~~LE~~lA~l~g~~~--~l~~~sG~~Ai~~al~al-~--~~GD~Vl~~~~~Y~~~~~~~~~~~~~~~G~~~~~~d~~d 151 (418)
T PLN02242 77 TVLNLGRQMAALEGTEA--AYCTASGMSAISSVLLQL-C--SSGGHVVASNTLYGGTHALLAHFLPRKCNITTTFVDITD 151 (418)
T ss_pred hHHHHHHHHHHHhCCCe--EEEEccHHHHHHHHHHHH-h--CCCCEEEEcCCcHHHHHHHHHHhhhhccCceEEEcCCCC
Confidence 34567899999999987 567899998888777665 2 38999999999998887766432 2347899888765
Q ss_pred -hhhhc-cCC-CEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCCCCCcccceEEEecC-ccccccC
Q 001989 289 -KDIDY-KSG-DVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKPPGELGADIVVGSA-QRFGVPM 363 (985)
Q Consensus 289 -~~l~~-l~~-~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~~~~~~GaDi~v~s~-k~lg~P~ 363 (985)
+++++ +++ +|++|++.+| |++|.+.|+++|+++||++|++++|| +.++. +...+.++|+||+++|. |.|+++
T Consensus 152 ~e~l~~~i~~~~tklV~lesp~NPtG~v~dl~~I~~la~~~gi~livD-ea~~~-~~~~~~~~g~divv~S~SK~l~g~- 228 (418)
T PLN02242 152 LEAVKKAVVPGKTKVLYFESISNPTLTVADIPELARIAHEKGVTVVVD-NTFAP-MVLSPARLGADVVVHSISKFISGG- 228 (418)
T ss_pred HHHHHHhcCcCCCEEEEEecCCCCCCcccCHHHHHHHHHHhCCEEEEE-CCCCc-cCCCHHHcCCcEEEEeCccccCCC-
Confidence 45656 777 4999999998 78999999999999999999999995 34442 23456778999999998 877642
Q ss_pred CCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcchH
Q 001989 364 GYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGL 443 (985)
Q Consensus 364 ~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl 443 (985)
|..-+|++++++++++.+.... . . + ....|. .+....|++ ...+..-+
T Consensus 229 --g~~~gG~iv~~~~li~~l~~~~----------~-----------~-~----~~~~g~--~~~~~~A~l--~~~~l~tl 276 (418)
T PLN02242 229 --ADIIAGAVCGPAELVNSMMDLH----------H-----------G-A----LMLLGP--TMNPKVAFE--LSERLPHL 276 (418)
T ss_pred --CCceEEEEEcCHHHHHHHHHHh----------h-----------h-h----hhccCC--CCCHHHHHH--HHcCCCcH
Confidence 3233588888887765541000 0 0 0 000110 111112222 34455566
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCeEEc
Q 001989 444 KTIAQRVHGLAGTFALGLKKLGTVEVQ 470 (985)
Q Consensus 444 ~~i~~~~~~~a~~l~~~L~~~g~~~~~ 470 (985)
..+.++..+++.++++.|++++ +++.
T Consensus 277 ~~r~~~~~~~a~~la~~L~~~~-~~V~ 302 (418)
T PLN02242 277 SLRMKEHCRRAMEYAKRMKELG-LKVI 302 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHhCC-CEEE
Confidence 7777888999999999999997 7775
|
|
| >PRK07503 methionine gamma-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.3e-13 Score=159.75 Aligned_cols=215 Identities=23% Similarity=0.230 Sum_probs=151.6
Q ss_pred HHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCch---
Q 001989 213 LLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDLK--- 289 (985)
Q Consensus 213 i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~~--- 289 (985)
..++++.+|++.|.+. +.++.+|++++..++.++ + ++||+||++...|+.....+...++..|++++.+|.+
T Consensus 67 ~~~le~~lA~l~g~~~--~i~~~sG~~Al~~~l~~l-l--~~Gd~Viv~~~~y~~t~~~~~~~~~~~G~~v~~vd~~d~~ 141 (403)
T PRK07503 67 LALLEQRMASLEGGEA--AVALASGMGAITATLWTL-L--RPGDEVIVDQTLYGCTFAFLHHGLGEFGVTVRHVDLTDPA 141 (403)
T ss_pred HHHHHHHHHHHhCCCc--EEEEcCHHHHHHHHHHHH-c--CCCCEEEEccCccchHHHHHHHHHhhCCEEEEEeCCCCHH
Confidence 3457789999999875 567788888777666554 3 3899999999999877766655566789999998764
Q ss_pred hhhc-cCCCEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCCCCCcccceEEEecC-ccccccCCCC
Q 001989 290 DIDY-KSGDVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKPPGELGADIVVGSA-QRFGVPMGYG 366 (985)
Q Consensus 290 ~l~~-l~~~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~~~~~~GaDi~v~s~-k~lg~P~~~G 366 (985)
++++ ++++|++|++.+| |++|.+.|+++|+++||++|++++|| +.++.+....|..+|+|++++|. |.+++| |
T Consensus 142 ~l~~~i~~~tklV~le~p~NPtG~~~di~~I~~la~~~gi~lIvD-~a~a~~~~~~~l~~g~Di~v~S~tK~l~g~---g 217 (403)
T PRK07503 142 ALKAAISDKTRMVYFETPANPNMRLVDIAAVAEIAHGAGAKVVVD-NTYCTPYLQRPLELGADLVVHSATKYLGGH---G 217 (403)
T ss_pred HHHHhcCccCcEEEEeCCCCCCCeeeCHHHHHHHHHHcCCEEEEE-CCCcccccCCchhhCCCEEEccccccccCC---C
Confidence 5656 7889999999888 78999999999999999999999994 45555555556678999999998 777532 2
Q ss_pred CCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcchHHHH
Q 001989 367 GPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTI 446 (985)
Q Consensus 367 GP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i 446 (985)
+..+|++..++++.+++.. .+ . +. ....|. +++ .|+ +...+.+-+..+
T Consensus 218 d~~gG~v~~~~~l~~~l~~--~~-------~---------------~~--~~g~~~-s~~---~a~--l~l~~L~tl~~r 265 (403)
T PRK07503 218 DITAGLVVGGKALADRIRL--EG-------L---------------KD--MTGAVM-SPF---DAF--LLMRGLKTLALR 265 (403)
T ss_pred ceeEEEEEcCHHHHHHHHh--hh-------H---------------Hh--CcCCCC-CHH---HHH--HHHcCcchHHHH
Confidence 2336888877776655410 00 0 00 001111 122 222 233344455666
Q ss_pred HHHHHHHHHHHHHHHhcCCCeE
Q 001989 447 AQRVHGLAGTFALGLKKLGTVE 468 (985)
Q Consensus 447 ~~~~~~~a~~l~~~L~~~g~~~ 468 (985)
.++..+++..+.+.|++...++
T Consensus 266 ~~~~~~na~~~a~~L~~~p~v~ 287 (403)
T PRK07503 266 MDRHCASAQAVAEWLARHPAVE 287 (403)
T ss_pred HHHHHHHHHHHHHHHHhCCCcc
Confidence 6777899999999999875354
|
|
| >TIGR00700 GABAtrnsam 4-aminobutyrate aminotransferase, prokaryotic type | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.4e-13 Score=160.73 Aligned_cols=325 Identities=16% Similarity=0.159 Sum_probs=191.7
Q ss_pred ccccccccCCCccccccccccccccc-cCCCCchhhhhhHHHHHHHHHHHHHHHhCCC--ccceecCcHHHHHHHHHHHH
Q 001989 592 IPLGSCTMKLNATTEMMPVTWPSFAN-IHPFAPADQAQGYQEMFNNLGEWLCTITGFD--SFSLQPNAGAAGEYAGLMVI 668 (985)
Q Consensus 592 ~~lG~~t~~~~~~~~~~~~~~~~f~~-~~p~~p~e~~~G~~~~~~e~~~~la~l~G~~--~~~~~~~sGa~a~~a~l~ai 668 (985)
..||++++.+..+...+......+.. .++. +...++.+.|++++... ...++.+||++|++++++.+
T Consensus 45 ~~lGh~~p~v~~a~~~ql~~~~~~~~~~~~~----------~~~~~la~~l~~~~p~~~~~~v~f~~sGseA~e~AlklA 114 (420)
T TIGR00700 45 LNIGHSHPRVVDAVRTQVAEFTHTCFMVTPY----------EGYVALAEKLNRIAPGSGPKKSVFFNSGAEAVENAVKIA 114 (420)
T ss_pred ccCCCCCHHHHHHHHHHHHhccCccccccCC----------hHHHHHHHHHHHhCCCCCCCEEEEeCCcHHHHHHHHHHH
Confidence 45788877776655444322111111 1111 12346777788877422 23577799999999999999
Q ss_pred HHHHHhcCCCCCCEEEE-cCCCCcccHHHHHHCC--------c-----EEEEEcCCCCCC-----------CCHHHHHHH
Q 001989 669 RAYHKARGDHHRNVCII-PVSAHGTNPATAAMCG--------M-----KIVSVGTDAKGN-----------INIEELRKA 723 (985)
Q Consensus 669 r~~~~~~g~~~~~~IIv-~~~~Hg~~~~~a~~~G--------~-----~vv~v~~d~~g~-----------iD~e~L~~~ 723 (985)
|.| +++.+||. ..++||....+....| + .+..+|.....+ -+++.+++.
T Consensus 115 r~~------tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (420)
T TIGR00700 115 RSY------TGRPGVVAFDHGFHGRTNMTMALTAKVMPYKSGFGPFAPEVYRAPLPYPYRDGLLDKQLSTDGELAAARAI 188 (420)
T ss_pred HHh------cCCCcEEEECCCcCCCcHHHHHhcCCCcccccCCCCCCCCcEEeCCCccccccccccchhHHHHHHHHHHH
Confidence 876 23455664 7789998766543221 1 223344311000 125677777
Q ss_pred HH--hcCCCEEEEEEEcC-CCcccccc---CHHHHHHHHHHcCCEEEEEccccccccCCCCCC--------ccCCcEEEe
Q 001989 724 AE--ANRDNLSTLMVTYP-STHGVYEE---GIDEICKIIHDNGGQVYMDGANMNAQVGLTSPG--------YIGADVCHL 789 (985)
Q Consensus 724 i~--~~~~~t~~Vvv~~p-n~~G~i~~---di~eI~~la~~~galliVD~a~~~~~~~l~~pg--------~~g~Di~~~ 789 (985)
+. ...+++++|+++-. ...|++.+ .+++|.++|+++|+++|+|+++. ++.+.+ ..-+|++++
T Consensus 189 ~~~~~~~~~iAavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~t----g~gr~g~~~a~~~~~~~pDi~~l 264 (420)
T TIGR00700 189 FVIDVGANNVAALVIEPVQGEGGFIVPAKGFVPALLDWCREHGIVFIADEVQT----GFARTGAMFACEHEGPEPDLITT 264 (420)
T ss_pred HHhhcCCCcEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEEeccc----CCcccchhHHHhhcCCCCCEEEe
Confidence 63 23467888888643 34566541 28999999999999999999873 222222 123788764
Q ss_pred CCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHHHH
Q 001989 790 NLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLT 869 (985)
Q Consensus 790 s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl~ 869 (985)
.|.++ +|..+|++++++++.+.+.... ..+++.|+++.++++.+.|..+..+++.
T Consensus 265 --sK~l~-----~G~pig~v~~~~~i~~~~~~~~------------------~~~T~~~~pl~~aaa~a~l~~l~~~~~~ 319 (420)
T TIGR00700 265 --AKSLA-----DGLPLSGVTGRAEIMDAPAPGG------------------LGGTYAGNPLACAAALAVLAIIESEGLI 319 (420)
T ss_pred --ecccc-----CCcceEEEEecHHHHhhcCCCC------------------cCCCCCcCHHHHHHHHHHHHHHHhccHH
Confidence 47774 4567889998887765543211 0112334566667777778777666554
Q ss_pred HHHHHHHHHHHHHHHHhhcc---CCee--ecCCCCceeeEEEEEecCc--cccCCCCHHHHHHHHHHCCCccCCC-CCCC
Q 001989 870 EASKIAILNANYMAKRLEKH---YPIL--FRGVNGTVAHEFIVDLRGL--KNTAGIEPEDVAKRLMDYGFHGPTM-SWPV 941 (985)
Q Consensus 870 ~~~~~~~~~a~~l~~~L~~g---~~l~--~~~~~~~~~~~~iv~~~~~--~~~~g~~~~~v~~~L~~~Gi~~~~~-~~p~ 941 (985)
+ +..+..++++++|++. ++.+ +.+. +.. +.+.+..- ..+.......+.+.+.++|+.+.+. .+
T Consensus 320 ~---~~~~~g~~l~~~L~~l~~~~~~~~~vrg~-G~~---~~i~~~~~~~~~~~~~~~~~l~~~~~~~Gv~i~p~~~f-- 390 (420)
T TIGR00700 320 E---RARQIGRLVTDRLTTLKAVDPRIGDVRGL-GAM---IAVELVDPGTTEPDAGLAERIATAAHAAGLLLLTCGMF-- 390 (420)
T ss_pred H---HHHHHHHHHHHHHHHHHhhCCCEEEeecc-ceE---EEEEEecCCCCCccHHHHHHHHHHHHHCCeEEeccCCC--
Confidence 4 4445556677666541 2211 1122 222 22332100 0000011345667777899987542 22
Q ss_pred CCEEEEeccCCCCHHHHHHHHccCChhHHHH
Q 001989 942 PGTLMIEPTESESKSWTGIVMLSSPSEKKLH 972 (985)
Q Consensus 942 ~~~lris~t~~~t~eeId~~~~~~~l~~~~~ 972 (985)
.+.+|++|+...++++|++ .+++|.+.+.
T Consensus 391 ~~~lRl~p~l~~~~~~l~~--~~~~l~~~l~ 419 (420)
T TIGR00700 391 GNIIRFLPPLTIGDELLSE--GLDILCAILA 419 (420)
T ss_pred CCEEEEECCCCcCHHHHHH--HHHHHHHHhh
Confidence 3799999998899999999 7788877653
|
Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase. |
| >COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.62 E-value=9.6e-14 Score=149.53 Aligned_cols=233 Identities=22% Similarity=0.236 Sum_probs=150.7
Q ss_pred HHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCch---hhh
Q 001989 216 FQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDLK---DID 292 (985)
Q Consensus 216 ~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~~---~l~ 292 (985)
+++.||.|-|.-. +.-+.+|.++.-.+++.+. +.||+||.+...+......+....+.+|++++++|.+ +++
T Consensus 67 lE~RiAaLEGG~a--a~a~aSG~AA~~~ai~~la---~aGD~iVss~~LYGGT~~lf~~tl~~~Gi~v~fvd~~d~~~~~ 141 (426)
T COG2873 67 LEERIAALEGGVA--ALAVASGQAAITYAILNLA---GAGDNIVSSSKLYGGTYNLFSHTLKRLGIEVRFVDPDDPENFE 141 (426)
T ss_pred HHHHHHHhhcchh--hhhhccchHHHHHHHHHhc---cCCCeeEeeccccCchHHHHHHHHHhcCcEEEEeCCCCHHHHH
Confidence 5579999998543 2233455555444443321 3899999999999888888876678899999999765 455
Q ss_pred c-cCCCEeEEEEEc-CCCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCCCCCcccceEEEecC-ccccccCCCCCCc
Q 001989 293 Y-KSGDVCGVLVQY-PGTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKPPGELGADIVVGSA-QRFGVPMGYGGPH 369 (985)
Q Consensus 293 ~-l~~~t~~V~v~~-pn~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~~~~~~GaDi~v~s~-k~lg~P~~~GGP~ 369 (985)
+ ++++|++|++.. .|+-+.+.|+++|+++||++|++++|+ +.++-+.+..|-+.|||||+.|. |++|+. |. .
T Consensus 142 ~aI~~nTkavf~EtigNP~~~v~Die~ia~iAh~~gvpliVD-NT~atpyl~rP~~hGADIVvHS~TK~igGh-Gt---~ 216 (426)
T COG2873 142 AAIDENTKAVFAETIGNPGLDVLDIEAIAEIAHRHGVPLIVD-NTFATPYLCRPIEHGADIVVHSATKYIGGH-GT---A 216 (426)
T ss_pred HHhCcccceEEEEeccCCCccccCHHHHHHHHHHcCCcEEEe-cCCCcceecchhhcCCCEEEEeecccccCC-cc---c
Confidence 6 899999999975 699999999999999999999999994 56777788899999999999998 887652 21 2
Q ss_pred E-EEEEEchhhHhcCCCceeeeeecCCCCcceeee---------cccccccccccccCCCccchhHHHHHHHHHHHHHhC
Q 001989 370 A-AFLATSQEYKRMMPGRIVGVSIDSSGKPALRVA---------MQTREQHIRRDKATSNICTAQALLANMAAMYAVYHG 439 (985)
Q Consensus 370 ~-G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~---------l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g 439 (985)
+ |.+.-.-.+-...++|+-..+...++-.+..++ +..|-+-. |.-|. +.++. ..|+...|
T Consensus 217 iGG~iVD~G~FDw~~~~rfP~~~~p~p~YhGl~~~~~~g~~af~~~~r~~~l-RDlGa----~lsPf-----nAfl~lqG 286 (426)
T COG2873 217 IGGVIVDGGKFDWTANGRFPEFTTPDPSYHGLVYTETFGNAAFIIKARVQLL-RDLGA----TLSPF-----NAFLLLQG 286 (426)
T ss_pred cceEEEeCCccccccCCCCcccCCCCccccceehhhhcccHHHHHHHHHHHH-Hhccc----ccCcH-----HHHHHHhc
Confidence 2 343333222212244443332211111111110 00011111 11110 00111 11345556
Q ss_pred cchHHHHHHHHHHHHHHHHHHHhcCCCeE
Q 001989 440 PEGLKTIAQRVHGLAGTFALGLKKLGTVE 468 (985)
Q Consensus 440 ~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~ 468 (985)
-|-|.-+.+|+.++|..+++.|++...+.
T Consensus 287 lETL~LRmerH~~NA~~vA~~L~~HpkV~ 315 (426)
T COG2873 287 LETLSLRMERHCENALKVAEFLENHPKVA 315 (426)
T ss_pred hhhhHHHHHHHHHhHHHHHHHHhcCCCee
Confidence 66666677888999999999999874343
|
|
| >PRK08574 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=4.9e-14 Score=162.29 Aligned_cols=208 Identities=20% Similarity=0.162 Sum_probs=142.7
Q ss_pred HHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHH---HHCCcEEEEEcCC
Q 001989 634 FNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATA---AMCGMKIVSVGTD 710 (985)
Q Consensus 634 ~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a---~~~G~~vv~v~~d 710 (985)
..++++.+++++|.+.+ +.++||+.|+.+++.++. .++|+||++...|+.+.... ...|++++.++.
T Consensus 55 ~~~lE~~lA~l~g~~~~-l~~~sG~~Ai~~~l~~ll--------~~GD~Vlv~~~~y~~~~~~~~~~~~~g~~v~~~~~- 124 (385)
T PRK08574 55 LRPLEEALAKLEGGVDA-LAFNSGMAAISTLFFSLL--------KAGDRVVLPMEAYGTTLRLLKSLEKFGVKVVLAYP- 124 (385)
T ss_pred HHHHHHHHHHHhCCCcE-EEeCCHHHHHHHHHHHHh--------CCCCEEEEcCCCchhHHHHHHHhhccCcEEEEECC-
Confidence 45789999999998754 556778877755554332 47899999988787665443 446888877653
Q ss_pred CCCCCCHHHHHHHHHhcCC-CEEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCccCCcEEE
Q 001989 711 AKGNINIEELRKAAEANRD-NLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIGADVCH 788 (985)
Q Consensus 711 ~~g~iD~e~L~~~i~~~~~-~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~g~Di~~ 788 (985)
|+++++++++ + +|++|++++| |++|.+. |+++|+++||++|+++++|+++..+ ....|..+|+|+++
T Consensus 125 -----d~~~l~~~i~---~~~tklV~ie~p~NPtG~v~-dl~~I~~la~~~gi~livD~t~a~~--~~~~~l~~GaDivv 193 (385)
T PRK08574 125 -----STEDIIEAIK---EGRTKLVFIETMTNPTLKVI-DVPEVAKAAKELGAILVVDNTFATP--LLYRPLRHGADFVV 193 (385)
T ss_pred -----CHHHHHHhcC---ccCceEEEEECCCCCCCEec-CHHHHHHHHHHcCCEEEEECCCCcc--ccCChhhhCCcEEE
Confidence 6899999997 5 8999999998 5789887 8999999999999999999998533 22345578999999
Q ss_pred eCCcccccccCCCCCCceEEEEE-cccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHH
Q 001989 789 LNLHKTFCIPHGGGGPGMGPIGV-KKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKG 867 (985)
Q Consensus 789 ~s~hK~l~~p~g~GGPg~G~i~~-~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eG 867 (985)
+|++|+++.| |...+|.+++ ++++...+... + ...+...+ + ..+|. ...|-+-
T Consensus 194 ~S~sK~l~g~---~d~~gG~vi~~~~~~~~~~~~~------------~-~~~g~~~~-----p---~~a~l--~l~~l~t 247 (385)
T PRK08574 194 HSLTKYIAGH---NDVVGGVAVAWSGEFLEELWEW------------R-RRLGTIMQ-----P---FEAYL--VLRGLKT 247 (385)
T ss_pred eeCceeecCC---CCceeEEEEECcHHHHHHHHHH------------H-HhcCCCCC-----H---HHHHH--HHcccCc
Confidence 9999998422 1112464555 44444332100 0 00111111 1 11232 3334445
Q ss_pred HHHHHHHHHHHHHHHHHHhhc
Q 001989 868 LTEASKIAILNANYMAKRLEK 888 (985)
Q Consensus 868 l~~~~~~~~~~a~~l~~~L~~ 888 (985)
+..+.++..+++.++.+.|++
T Consensus 248 L~~R~~~~~~na~~la~~L~~ 268 (385)
T PRK08574 248 LEVRFERQCRNAMAIAEFLSE 268 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHHc
Confidence 667778888899999999986
|
|
| >PRK11706 TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=8.7e-14 Score=160.27 Aligned_cols=306 Identities=14% Similarity=0.051 Sum_probs=180.6
Q ss_pred HHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcCCCC-
Q 001989 634 FNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAK- 712 (985)
Q Consensus 634 ~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~d~~- 712 (985)
.+++++++++++|.+.+ +.+++|++|...++.++ +.+++++||++...|......+...|++++.++++++
T Consensus 33 ~~~~e~~la~~~g~~~~-v~~~sgt~al~~~l~~~-------~~~~Gd~Viv~~~t~~~~~~~~~~~G~~~v~~d~d~~~ 104 (375)
T PRK11706 33 TRRCQQWLEQRFGSAKV-LLTPSCTAALEMAALLL-------DIQPGDEVIMPSYTFVSTANAFVLRGAKIVFVDIRPDT 104 (375)
T ss_pred HHHHHHHHHHHhCCCeE-EEECCHHHHHHHHHHHh-------CCCCCCEEEECCCCcHHHHHHHHHcCCEEEEEecCCCc
Confidence 45778889999998753 45567777653333322 1247899999998777777777889999999999876
Q ss_pred CCCCHHHHHHHHHhcCCCEEEEEEEcCCCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCC-CCccCCcEEEeCC
Q 001989 713 GNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTS-PGYIGADVCHLNL 791 (985)
Q Consensus 713 g~iD~e~L~~~i~~~~~~t~~Vvv~~pn~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~-pg~~g~Di~~~s~ 791 (985)
+.+|+++++++++ ++|++|+++++ +|... |+++|.++|+++|+++++|++|..+...-.. .+.+ .|+.++|+
T Consensus 105 ~~~d~~~le~~i~---~~tk~i~~~~~--~G~~~-~~~~i~~la~~~~i~vIeD~a~a~g~~~~~~~~g~~-~~~~~~Sf 177 (375)
T PRK11706 105 MNIDETLIEAAIT---PKTRAIVPVHY--AGVAC-EMDTIMALAKKHNLFVVEDAAQGVMSTYKGRALGTI-GHIGCFSF 177 (375)
T ss_pred CCcCHHHHHHhcC---CCCeEEEEeCC--CCCcc-CHHHHHHHHHHcCCEEEEECccccccccCCeeeecC-cCEEEEeC
Confidence 5799999999997 78999998764 68776 8999999999999999999998644311111 2332 58889998
Q ss_pred c--ccccccCCCCCCceEEEEEcccccCcCCCC-ccccCCCC-CC-CCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHH
Q 001989 792 H--KTFCIPHGGGGPGMGPIGVKKHLAPFLPSH-PVVSTGGI-PA-PEKSQPLGTIAAAPWGSALILPISYTYIAMMGSK 866 (985)
Q Consensus 792 h--K~l~~p~g~GGPg~G~i~~~~~l~~~lp~~-~~g~~~~~-~~-~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~e 866 (985)
| |.++. |-|++++..++++...+... ..|...+. .. +........+..++.-+...++...+-++
T Consensus 178 ~~~K~l~~-----g~gG~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~~~ql~----- 247 (375)
T PRK11706 178 HETKNYTA-----GEGGALLINDPALIERAEIIREKGTNRSQFFRGQVDKYTWVDIGSSYLPSELQAAYLWAQLE----- 247 (375)
T ss_pred CCCccccc-----cCCeEEEECCHHHHHHHHHHHHcCCCcchhhccCCCcceeeecccccCcCHHHHHHHHHHHH-----
Confidence 8 88742 22344554445544322100 00100000 00 00000000011111101121222222222
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccC--C-eeec-CCCC--ceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCC----
Q 001989 867 GLTEASKIAILNANYMAKRLEKHY--P-ILFR-GVNG--TVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPT---- 936 (985)
Q Consensus 867 Gl~~~~~~~~~~a~~l~~~L~~g~--~-l~~~-~~~~--~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~---- 936 (985)
.+.+..++..++++++.+.|.+.. + +..+ .+.+ ...+.+.+.++ .+.+..++.+.|.++||.+..
T Consensus 248 ~l~~~~~~R~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~r~~l~~~L~~~gI~~~~~~~p 322 (375)
T PRK11706 248 AADRINQRRLALWQRYYDALAPLAEAGRIELPSIPDDCKHNAHMFYIKLR-----DLEDRSALINFLKEAGIMAVFHYIP 322 (375)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCcCCeeecCCCCCCCceeeEEEEEEEC-----CcCCHHHHHHHHHHCCCCccccCCc
Confidence 244455556677777888786521 1 2211 1111 12333444443 134678999999999998531
Q ss_pred CC--------------CC-----CCCEEEEeccCCCCHHHHHHHHccCChhHHH
Q 001989 937 MS--------------WP-----VPGTLMIEPTESESKSWTGIVMLSSPSEKKL 971 (985)
Q Consensus 937 ~~--------------~p-----~~~~lris~t~~~t~eeId~~~~~~~l~~~~ 971 (985)
+. +| ....+.+-+....+++|+++ .++++++++
T Consensus 323 ~~~~~~~~~~~~~~~~~p~a~~~~~~~l~lP~~~~l~~~~~~~--i~~~i~~~~ 374 (375)
T PRK11706 323 LHSSPAGERFGRFHGEDRYTTKESERLLRLPLFYNLTDVEQRT--VIDTILEFF 374 (375)
T ss_pred cCcchhhHhcCCCCCCChHHHHHHhCcEeccCCCCCCHHHHHH--HHHHHHHHh
Confidence 11 11 12446666666789999999 667776643
|
|
| >PRK07366 succinyldiaminopimelate transaminase; Validated | Back alignment and domain information |
|---|
Probab=99.61 E-value=6.4e-14 Score=162.27 Aligned_cols=297 Identities=11% Similarity=0.083 Sum_probs=180.6
Q ss_pred hhHHHHHHHHHHHHHHHhCC--Ccc-ceecCcHHH-HHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcE
Q 001989 628 QGYQEMFNNLGEWLCTITGF--DSF-SLQPNAGAA-GEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMK 703 (985)
Q Consensus 628 ~G~~~~~~e~~~~la~l~G~--~~~-~~~~~sGa~-a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~ 703 (985)
+|..++.+.+.+++.+..|. +.. .+..++|++ |.. ++++.+. .++|+|+++++.+..+...++..|++
T Consensus 68 ~G~~~lr~aia~~~~~~~g~~~~~~~~I~it~Gs~~al~---~~~~~l~-----~~gd~Vlv~~P~y~~~~~~~~~~g~~ 139 (388)
T PRK07366 68 HGTLDFREAAAQWYEQRFGLAVDPETEVLPLIGSQEGTA---HLPLAVL-----NPGDFALLLDPGYPSHAGGVYLAGGQ 139 (388)
T ss_pred CCCHHHHHHHHHHHHHhhCCcCCCcCeEEECCCcHHHHH---HHHHHhC-----CCCCEEEEcCCCCcchHHHHHhcCCE
Confidence 56666666666666655564 444 466555544 443 2333221 47899999998887787888899999
Q ss_pred EEEEcCCCC--CCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccc--cCHHHHHHHHHHcCCEEEEEccccccc-cCCC
Q 001989 704 IVSVGTDAK--GNINIEELRKAAEANRDNLSTLMVTYP-STHGVYE--EGIDEICKIIHDNGGQVYMDGANMNAQ-VGLT 777 (985)
Q Consensus 704 vv~v~~d~~--g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~--~di~eI~~la~~~galliVD~a~~~~~-~~l~ 777 (985)
++.+|++++ ...|++++++.+. +++++|++++| |++|.+. ..+++|.++|+++|+++++|.++..-. .+-.
T Consensus 140 ~~~v~~~~~~~~~~d~~~l~~~~~---~~~k~i~l~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~ 216 (388)
T PRK07366 140 IYPMPLRAENDFLPVFADIPTEVL---AQARLMVLSYPHNPTTAIAPLSFFQEAVAFCQQHDLVLVHDFPYVDLVFDGEV 216 (388)
T ss_pred EEEEECCCccCCCCCHHHHHHhhc---ccceEEEEeCCCCCCCccCCHHHHHHHHHHHHHcCeEEEEecchhhcccCCCC
Confidence 999999754 4688999988776 67899999998 5799985 247788889999999999999874211 1100
Q ss_pred -CC--Cc---cC-CcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhh
Q 001989 778 -SP--GY---IG-ADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSA 850 (985)
Q Consensus 778 -~p--g~---~g-~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~ 850 (985)
.+ .. .+ .-+++.|+.|+|++| |.++|++++++++...+.... ...++++ ..
T Consensus 217 ~~~~~~~~~~~~~~vi~~~SfSK~~g~~----GlRiG~~v~~~~li~~l~~~~--------------~~~~~~~----~~ 274 (388)
T PRK07366 217 EPPSILQADPEKSVSIEFFTLSKSYNMG----GFRIGFAIGNAQLIQALRQVK--------------AVVDFNQ----YR 274 (388)
T ss_pred CCCChhhCCCCcccEEEEeecccccCCc----chhheehcCCHHHHHHHHHHH--------------hhcccCC----CH
Confidence 01 11 11 125677888988654 789999998877665442110 0011111 01
Q ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHH-H
Q 001989 851 LILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRL-M 928 (985)
Q Consensus 851 ~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L-~ 928 (985)
....++.+.+.. ..+-+++..+...++.+++.+.|++ ++.. ..+.+..+ +.++++. ..+.+..+++++| .
T Consensus 275 ~~~~~a~~~l~~-~~~~l~~~~~~~~~~r~~l~~~L~~~~~~~--~~p~~g~f--~~~~~~~---~~~~~~~~~~~~l~~ 346 (388)
T PRK07366 275 GILNGAIAALTG-PQATVQQTVQIFRQRRDAFINALHQIGWPV--PLPEATMY--VWAKLPE---PWQGNSVEFCTQLVA 346 (388)
T ss_pred HHHHHHHHHHhC-cHHHHHHHHHHHHHHHHHHHHHHHHCCCcc--cCCCeeEE--EEEECCc---ccCCCHHHHHHHHHH
Confidence 111122222211 2344555566677788888888876 3332 22222222 3455541 0012467788777 5
Q ss_pred HCCCccCCC-CCC--CCCEEEEeccCCCCHHHHHHHHccCChhH
Q 001989 929 DYGFHGPTM-SWP--VPGTLMIEPTESESKSWTGIVMLSSPSEK 969 (985)
Q Consensus 929 ~~Gi~~~~~-~~p--~~~~lris~t~~~t~eeId~~~~~~~l~~ 969 (985)
++|+.+... .|+ ..+++||++. .+.+++++ .++.|.+
T Consensus 347 ~~gv~v~pg~~f~~~~~~~iRi~~~--~~~~~l~~--~l~rl~~ 386 (388)
T PRK07366 347 QTGVAASPGSGFGKSGEGYVRFALV--HDPDILEE--AVERIAA 386 (388)
T ss_pred hCCEEEeCchHhCcCCCCeEEEEec--CCHHHHHH--HHHHHHH
Confidence 679986532 232 2479999986 35788887 5455543
|
|
| >PRK00062 glutamate-1-semialdehyde aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=3.4e-14 Score=166.20 Aligned_cols=292 Identities=15% Similarity=0.198 Sum_probs=175.9
Q ss_pred HHHHHHHHHHh-CCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEE-cCCCCcccHHHHHHC------------
Q 001989 635 NNLGEWLCTIT-GFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCII-PVSAHGTNPATAAMC------------ 700 (985)
Q Consensus 635 ~e~~~~la~l~-G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv-~~~~Hg~~~~~a~~~------------ 700 (985)
.++.+++++++ +.+ ..++.+||++|+++++++++.+. ++++||. ...+||.........
T Consensus 93 ~~la~~L~~~~~~~~-~v~~~~sGseA~e~Aik~a~~~~------g~~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~ 165 (426)
T PRK00062 93 VELAELVIELVPSIE-MVRMVNSGTEATMSAIRLARGYT------GRDKIIKFEGCYHGHADSLLVKAGSGAATLGLPDS 165 (426)
T ss_pred HHHHHHHHHhCCCCC-EEEEecCHHHHHHHHHHHHHHHh------CCCeEEEEcCccCCchhhhhhccCccccccCCCCC
Confidence 46778888876 343 35677999999999999888752 3456665 667888754332211
Q ss_pred -CcE------EEEEcCCCCCCCCHHHHHHHHHhcCCCEEEEEEEc-CCCccccccC----HHHHHHHHHHcCCEEEEEcc
Q 001989 701 -GMK------IVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTY-PSTHGVYEEG----IDEICKIIHDNGGQVYMDGA 768 (985)
Q Consensus 701 -G~~------vv~v~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~-pn~~G~i~~d----i~eI~~la~~~galliVD~a 768 (985)
+.. +..+|. .|++++++.++++.+++++|+++. ++..|.+. + +++|.++|+++|+++++|++
T Consensus 166 ~~~~~~~~~~~~~~~~-----~d~~~l~~~i~~~~~~~aaiivEpv~~~~G~~~-~~~~~l~~l~~l~~~~~~llI~DEv 239 (426)
T PRK00062 166 PGVPEDFAKHTLTAPY-----NDLEAVEELFEEYGDEIAAVIVEPVAGNMGVVP-PKPGFLEGLRELCDEHGALLIFDEV 239 (426)
T ss_pred CCCCcccccceEEcCC-----CCHHHHHHHHHhCCCcEEEEEEeCCcCCCCCcC-CCHHHHHHHHHHHHHcCCEEEEeec
Confidence 110 111222 389999999975556788888874 45678776 5 89999999999999999999
Q ss_pred ccccc--cCCCCCCccC--CcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCC
Q 001989 769 NMNAQ--VGLTSPGYIG--ADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAA 844 (985)
Q Consensus 769 ~~~~~--~~l~~pg~~g--~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s 844 (985)
|. ++ +.......++ +|++++ .|.++ +|..+|++++++++.+.+... +. ....+
T Consensus 240 ~~-G~r~g~~~~~~~~~~~pDi~~~--gK~l~-----~G~p~ga~~~~~~i~~~~~~~--~~-------------~~~~~ 296 (426)
T PRK00062 240 MT-GFRVALGGAQGYYGVTPDLTTL--GKIIG-----GGLPVGAFGGRREIMEQLAPL--GP-------------VYQAG 296 (426)
T ss_pred hh-ccccCCccHHHHhCCCcchHhh--hhHhh-----CCCcceeeeEHHHHHHhhccC--CC-------------ceecc
Confidence 84 32 1111111122 576543 47774 344466777787776655311 00 00011
Q ss_pred cchhhhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhcc---CCee--ecCCCCceeeEEEEEecCccc----c
Q 001989 845 APWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKH---YPIL--FRGVNGTVAHEFIVDLRGLKN----T 915 (985)
Q Consensus 845 ~~~g~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~g---~~l~--~~~~~~~~~~~~iv~~~~~~~----~ 915 (985)
++.+++..++++.+.|..+..+. ..++..++.++++++|++. .++. ..+ .+..+ .+.+..+.... .
T Consensus 297 T~~~~p~~~aaa~a~L~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~vrg-~G~~~-~i~l~~~~~~~~~~~~ 371 (426)
T PRK00062 297 TLSGNPLAMAAGLATLKLLKEPG---FYEELEALTKRLAEGLKEAAKKAGIPLTVNR-VGSMF-GLFFTDEPVTNYADAK 371 (426)
T ss_pred cCcCCHHHHHHHHHHHHHHhcch---HHHHHHHHHHHHHHHHHHHHHHcCCceEEEE-ecceE-EEEEecCCCcchhhhc
Confidence 22345566667778888776543 4456667778888877641 2221 112 12222 22222110000 0
Q ss_pred CC--CCHHHHHHHHHHCCCccCCCCCCCCCEEEEeccCCCCHHHHHHHHccCChhHHHHhh
Q 001989 916 AG--IEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRL 974 (985)
Q Consensus 916 ~g--~~~~~v~~~L~~~Gi~~~~~~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~ 974 (985)
.+ .....+.+.|.++|+.+....+ +.+++ +..+|++|||+ +++++++++.++
T Consensus 372 ~~~~~~~~~i~~~l~~~Gv~v~~~~~---~~~~~--~~~~t~~ei~~--~~~~l~~~l~~~ 425 (426)
T PRK00062 372 KSDTERFARFFHAMLDEGVYLAPSQF---EAGFV--SAAHTDEDIEK--TLEAARKAFAAL 425 (426)
T ss_pred cccHHHHHHHHHHHHHCCeEeecCCc---Cceee--eccCCHHHHHH--HHHHHHHHHHhh
Confidence 00 0135788899999999865433 35555 46889999999 788998888654
|
|
| >PRK08056 threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=5.1e-14 Score=161.15 Aligned_cols=280 Identities=11% Similarity=0.052 Sum_probs=171.3
Q ss_pred HHHHHHHHHHhCCCccceecCcHHH-HHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcCCCC-
Q 001989 635 NNLGEWLCTITGFDSFSLQPNAGAA-GEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAK- 712 (985)
Q Consensus 635 ~e~~~~la~l~G~~~~~~~~~sGa~-a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~d~~- 712 (985)
.++++.+++++|.+...+..++|++ +. ..+++.+ .+++ +++..+.+..+...++..|++++.+|.+++
T Consensus 58 ~~lr~~ia~~~~~~~~~i~it~Ga~~~l---~~~~~~l------~~g~-viv~~P~y~~~~~~~~~~g~~~~~v~~~~~~ 127 (356)
T PRK08056 58 RHLHQALARHHQVPASWILAGNGETESI---FAVVSGL------KPRR-AMIVTPGFAEYRRALQQVGCEIRRYSLREAD 127 (356)
T ss_pred HHHHHHHHHHhCcChhhEEECCCHHHHH---HHHHHHh------CCCC-EEEeCCCcHHHHHHHHHcCCeEEEEeccccc
Confidence 5788899999998876666655654 33 2333332 2455 555555444445557889999999998643
Q ss_pred -CCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccC---HHHHHHHHHHcCCEEEEEccccccc-cC--C-CCCCccC
Q 001989 713 -GNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEG---IDEICKIIHDNGGQVYMDGANMNAQ-VG--L-TSPGYIG 783 (985)
Q Consensus 713 -g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~d---i~eI~~la~~~galliVD~a~~~~~-~~--l-~~pg~~g 783 (985)
..+| +++.+.+. +++++|++++| |++|.+. + +++|+++|+++|+++++|+++..-. .+ . .......
T Consensus 128 ~~~~~-~~~~~~~~---~~~k~v~l~~p~NPTG~~~-~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~ 202 (356)
T PRK08056 128 GWQLT-DAILEALT---PDLDCLFLCTPNNPTGLLP-ERQLLQAIAERCKSLNIALILDEAFIDFIPDETGFIPQLADNP 202 (356)
T ss_pred CCCcc-HHHHHhcc---CCCCEEEEeCCcCCCCCCC-CHHHHHHHHHHHHhcCCEEEEecchhccCCcchHHHHHhccCC
Confidence 3455 45556665 78899999999 5799986 5 8889999999999999999862110 00 0 0011234
Q ss_pred CcEEEeCCcccccccCCCCCCceEEEEEc-ccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHH
Q 001989 784 ADVCHLNLHKTFCIPHGGGGPGMGPIGVK-KHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAM 862 (985)
Q Consensus 784 ~Di~~~s~hK~l~~p~g~GGPg~G~i~~~-~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~ 862 (985)
.++++.|++|+|++| |.++|+++++ +++...+.... ...+++ .....++...+.
T Consensus 203 ~~i~~~S~SK~~~~~----G~RiG~~v~~~~~~~~~l~~~~--------------~~~~~~------~~~~~~a~~~l~- 257 (356)
T PRK08056 203 HLWVLRSLTKFYAIP----GLRLGYLVNSDDAAVARMRRQQ--------------MPWSIN------AFAALAGEVILQ- 257 (356)
T ss_pred CEEEEEechhhccCc----chhheeeecCCHHHHHHHHHhC--------------CCCchh------HHHHHHHHHHhC-
Confidence 568889999999765 7899999874 34433321100 001111 111111222221
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHHhhccCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCC-CCC-
Q 001989 863 MGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTM-SWP- 940 (985)
Q Consensus 863 lg~eGl~~~~~~~~~~a~~l~~~L~~g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~-~~p- 940 (985)
+.+-+++..++..++++++.+.|++...+....+.+ .+ +.++++ .+..++++.|.++||.+... .|+
T Consensus 258 -~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~-~~--~~~~~~-------~~~~~~~~~l~~~gI~v~~~~~f~~ 326 (356)
T PRK08056 258 -DRAYQQATWQWLAEEGARFYQALCALPLLTVWPGRA-NY--LFLRCE-------RPDIDLQRALLTQRILIRSCANYPG 326 (356)
T ss_pred -CHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEcCCCC-cE--EEEEcC-------CChHHHHHHHHHCCeEEEECCCCCC
Confidence 223334445556777888888887622222222222 22 335543 24578999999999987542 232
Q ss_pred -CCCEEEEeccCCCCHHHHHHHHccCChhHH
Q 001989 941 -VPGTLMIEPTESESKSWTGIVMLSSPSEKK 970 (985)
Q Consensus 941 -~~~~lris~t~~~t~eeId~~~~~~~l~~~ 970 (985)
..+++||++ .+.++.++ +++.|+++
T Consensus 327 ~~~~~iRis~---~~~~~~~~--l~~~l~~~ 352 (356)
T PRK08056 327 LDSRYYRVAI---RSAAENER--LLAALRNV 352 (356)
T ss_pred CCCCEEEEEE---cCHHHHHH--HHHHHHHH
Confidence 236899998 57899999 66666655
|
|
| >PRK07568 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.5e-13 Score=159.56 Aligned_cols=294 Identities=15% Similarity=0.132 Sum_probs=176.7
Q ss_pred HHHHHHHHHh-----CCCccceec-CcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcC
Q 001989 636 NLGEWLCTIT-----GFDSFSLQP-NAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGT 709 (985)
Q Consensus 636 e~~~~la~l~-----G~~~~~~~~-~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~ 709 (985)
++++.+++++ +.+...+.. ++|++|...+ ++.+. .++++|+++++.++.+...++..|++++.++.
T Consensus 70 ~lr~~ia~~~~~~~~~~~~~~i~~t~G~~~al~~~---~~~l~-----~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~v~~ 141 (397)
T PRK07568 70 ELREAFAKYYKKWGIDVEPDEILITNGGSEAILFA---MMAIC-----DPGDEILVPEPFYANYNGFATSAGVKIVPVTT 141 (397)
T ss_pred HHHHHHHHHHHHhCCCCCcceEEEcCChHHHHHHH---HHHhc-----CCCCEEEEecCCCccHHHHHHHcCCEEEEeec
Confidence 3444555554 344444444 4455555333 32221 36789999888777666667889999999998
Q ss_pred CC-CC-C-CCHHHHHHHHHhcCCCEEEEEEEcCC-Ccccccc--CHHHHHHHHHHcCCEEEEEccccccc-cC--CCCCC
Q 001989 710 DA-KG-N-INIEELRKAAEANRDNLSTLMVTYPS-THGVYEE--GIDEICKIIHDNGGQVYMDGANMNAQ-VG--LTSPG 780 (985)
Q Consensus 710 d~-~g-~-iD~e~L~~~i~~~~~~t~~Vvv~~pn-~~G~i~~--di~eI~~la~~~galliVD~a~~~~~-~~--l~~pg 780 (985)
+. +| . .|+++|+++++ +++++|++++|+ ++|.+.+ ++++|+++|+++|+++++|+++..-. .+ .....
T Consensus 142 ~~~~g~~~~~~~~l~~~~~---~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~s~~ 218 (397)
T PRK07568 142 KIEEGFHLPSKEEIEKLIT---PKTKAILISNPGNPTGVVYTKEELEMLAEIAKKHDLFLISDEVYREFVYDGLKYTSAL 218 (397)
T ss_pred CcccCCCCCCHHHHHHhcC---ccceEEEEECCCCCCCccCCHHHHHHHHHHHHHCCcEEEEeccchhcccCCCCccChh
Confidence 63 34 3 36899999987 788999999994 7998852 58999999999999999999873110 11 00111
Q ss_pred cc----CCcEEEeCCcccccccCCCCCCceEEEEEc-ccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHH
Q 001989 781 YI----GADVCHLNLHKTFCIPHGGGGPGMGPIGVK-KHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPI 855 (985)
Q Consensus 781 ~~----g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~-~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~ 855 (985)
.+ .--+++.|++|+|+.| |.++|++++. +++...+.... . . ..+.+...+. +
T Consensus 219 ~~~~~~~~~i~~~S~SK~~~~~----G~R~G~~~~~~~~~~~~~~~~~------------~-~--~~~~s~~~q~----~ 275 (397)
T PRK07568 219 SLEGLEDRVIIIDSVSKRYSAC----GARIGCLISKNKELIAAAMKLC------------Q-A--RLSPPTLEQI----G 275 (397)
T ss_pred hcCCCcCCEEEEecchhhccCC----CcceEEEecCCHHHHHHHHHHh------------h-c--cCCCCcHHHH----H
Confidence 11 1126777889988643 6789999875 44443221000 0 0 0111111121 1
Q ss_pred HHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhccCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHH------
Q 001989 856 SYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMD------ 929 (985)
Q Consensus 856 a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~------ 929 (985)
+..++. .+.+-+++..+...++++++.+.|++...+.+..+.+.++ +.++++ ..+..++++.|.+
T Consensus 276 ~~~~l~-~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~p~g~~~--~~~~l~------~~~~~~~~~~l~~~~~~~~ 346 (397)
T PRK07568 276 AAALLD-TPESYFDEVREEYKKRRDILYEELNKIPGVVCEKPKGAFY--IIAKLP------VDDAEDFAKWLLTDFNYNG 346 (397)
T ss_pred HHHHhh-CCHHHHHHHHHHHHHHHHHHHHHHhcCCCceecCCCcceE--EEEecC------CCCHHHHHHHHHhhccccc
Confidence 112232 2334455555567778888989987622222222223222 235554 2256788888865
Q ss_pred CCCccCCC-CC---C--CCCEEEEeccCCCCHHHHHHHHccCChhHHHHhhcc
Q 001989 930 YGFHGPTM-SW---P--VPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRLKM 976 (985)
Q Consensus 930 ~Gi~~~~~-~~---p--~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~~~ 976 (985)
+|+.+... .| + ..+++|+++. .+.+++++ .++.|.+.+++..+
T Consensus 347 ~gv~v~pg~~f~~~~~~~~~~iRls~~--~~~~~~~~--~~~~l~~~l~~~~~ 395 (397)
T PRK07568 347 ETVMVAPASGFYATPGLGKNEIRIAYV--LNEEDLKR--AMEILKEALEKYNK 395 (397)
T ss_pred ceEEEeCchHhcCCCCCCCCeEEEEEe--CCHHHHHH--HHHHHHHHHHHhhc
Confidence 47875431 12 2 1368999986 45799999 77888888876553
|
|
| >PRK07269 cystathionine gamma-synthase; Reviewed | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.4e-13 Score=157.29 Aligned_cols=228 Identities=18% Similarity=0.125 Sum_probs=154.4
Q ss_pred HHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEe-Cchhh
Q 001989 213 LLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVS-DLKDI 291 (985)
Q Consensus 213 i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v-~~~~l 291 (985)
..++++.+|++.|.+. +..+.+|++++.+++.. + ++||+||++...+......+.......++++.+. |++++
T Consensus 56 ~~~le~~lA~leg~~~--~v~~~sG~aAi~~~l~~--l--~~GD~VI~~~~~yg~~~~~~~~~~~~~~~~~~~~~d~~~l 129 (364)
T PRK07269 56 RAKLEETLAAIESADY--ALATSSGMSAIVLAFSV--F--PVGSKVVAVRDLYGGSFRWFNQQEKEGRFHFTYANTEEEL 129 (364)
T ss_pred HHHHHHHHHHHhCCCe--EEEeCCHHHHHHHHHHH--h--CCCCEEEEecCCcCchHHHHHHHHhcCcEEEEecCCHHHH
Confidence 3457899999998764 78889999887765532 2 3899999999888766654444333346665543 46778
Q ss_pred hc-cCCCEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCCCCCcccceEEEecC-ccccccCCCCCC
Q 001989 292 DY-KSGDVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKPPGELGADIVVGSA-QRFGVPMGYGGP 368 (985)
Q Consensus 292 ~~-l~~~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~~~~~~GaDi~v~s~-k~lg~P~~~GGP 368 (985)
++ ++++|++|++.+| |++|.+.|+++|+++||++|++++|| +.++.+....|-++|+||+++|+ |.++++ |.-
T Consensus 130 ~~~i~~~TklV~lesP~NPtg~~~di~~I~~la~~~gi~vvvD-~t~~~~~~~~pl~~gaDivv~S~tK~l~g~---~d~ 205 (364)
T PRK07269 130 IAAIEEDTDIVYIETPTNPLMVEFDIEKVAKLAHAKGAKVIVD-NTFYSPIYQRPIELGADIVLHSATKYLSGH---NDV 205 (364)
T ss_pred HHhcCcCceEEEEECCCCCCCeeeCHHHHHHHHHHcCCEEEEE-CCCcccccCCchhhCCcEEEecCceeccCC---Ccc
Confidence 77 8889999999998 77999999999999999999999995 34454555567789999999998 777643 211
Q ss_pred cEEEEEEch-hhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcchHHHHH
Q 001989 369 HAAFLATSQ-EYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIA 447 (985)
Q Consensus 369 ~~G~l~~~~-~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i~ 447 (985)
-.|++++++ ++.+++- ..+...| .| .+++ .| |+...+-+-++.+.
T Consensus 206 ~gG~v~~~~~~l~~~~~-------------------------~~~~~~G---~~-~s~~---~a--~l~~~~L~tL~~r~ 251 (364)
T PRK07269 206 LAGVVVTNDLELYEKLF-------------------------YNLNTTG---AV-LSPF---DS--YLLMRGLKTLSLRM 251 (364)
T ss_pred cceEEEeCcHHHHHHHH-------------------------HHHHHhC---CC-CCHH---HH--HHHHcCCCcHHHHH
Confidence 135666653 4433330 0000011 11 0122 22 23555666788888
Q ss_pred HHHHHHHHHHHHHHhcCCCeE-EcCCCCcceEEEecCC
Q 001989 448 QRVHGLAGTFALGLKKLGTVE-VQGLPFFDTVKVKCAD 484 (985)
Q Consensus 448 ~~~~~~a~~l~~~L~~~g~~~-~~~~~~~~~~~~~~~~ 484 (985)
++..+++.++++.|++...+. ++-++....++|...+
T Consensus 252 ~~~~~na~~~a~~L~~~p~v~~v~ypg~gg~~sf~~~~ 289 (364)
T PRK07269 252 ERSTANAQEVVAFLKKSPAVKEVLYTGKGGMISFKVAD 289 (364)
T ss_pred HHHHHHHHHHHHHHHhCCCccEEeCCCcCcEEEEEECC
Confidence 889999999999999875354 3333444456666544
|
|
| >PRK15400 lysine decarboxylase CadA; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=4.7e-14 Score=169.17 Aligned_cols=296 Identities=15% Similarity=0.113 Sum_probs=190.6
Q ss_pred HHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcCCCC-
Q 001989 634 FNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAK- 712 (985)
Q Consensus 634 ~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~d~~- 712 (985)
+.++|+.+|++||.+...|..|++|+|+.++++++. +++|+||++++.|-+....+.+.|+..+++++..+
T Consensus 197 i~eAe~~AA~~fgAd~tyfvvNGTS~~n~av~~a~~--------~~Gd~VLvdRN~HKSv~haLilsga~PVYl~P~rn~ 268 (714)
T PRK15400 197 HKEAEEYIARVFNADRSYMVTNGTSTANKIVGMYSA--------PAGSTVLIDRNCHKSLTHLMMMSDVTPIYFRPTRNA 268 (714)
T ss_pred HHHHHHHHHHHhCCCcEEEEeCchHHHHHHHHHHhc--------CCCCEEEeecccHHHHHHHHHHcCCeEEEecccccc
Confidence 678999999999999988888888888877776653 47899999999998888888999999999976542
Q ss_pred ----CCCC-----HHHHHHHHHhcCCCEE---EEEEEcCCCccccccCHHHHHHHHHHcCCEEEEEccccccccCCC---
Q 001989 713 ----GNIN-----IEELRKAAEANRDNLS---TLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLT--- 777 (985)
Q Consensus 713 ----g~iD-----~e~L~~~i~~~~~~t~---~Vvv~~pn~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~--- 777 (985)
|.++ .+.++++|.+++ +.+ .+++++|++.|++. |+++|.++||.++ ++||+||. +...|.
T Consensus 269 ~Gi~g~I~~~~~~~e~i~~~i~~~p-~ak~p~~~vit~pTYdG~~y-d~~~I~~~~~~~~--ilvDEAwg-ah~~F~p~~ 343 (714)
T PRK15400 269 YGILGGIPQSEFQHATIAKRVKETP-NATWPVHAVITNSTYDGLLY-NTDFIKKTLDVKS--IHFDSAWV-PYTNFSPIY 343 (714)
T ss_pred cCCccCCCccccCHHHHHHHHHhCc-cccCccEEEEECCCCccEec-CHHHHHHHhCCCC--EEEEccch-hhhccCccc
Confidence 4456 899999998653 334 79999999999999 9999999999887 68999983 222221
Q ss_pred ---CCCccCC---c--EEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhh
Q 001989 778 ---SPGYIGA---D--VCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGS 849 (985)
Q Consensus 778 ---~pg~~g~---D--i~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~ 849 (985)
.+-..|+ | +++.|.||+++.- -...+|-++.. +....+- + ........|..|..
T Consensus 344 ~~~sam~~ga~~~~~i~vtQStHKtL~al-----TQaS~LHvkg~----vd~~~~n-------~--a~~m~~STSPsY~l 405 (714)
T PRK15400 344 EGKCGMSGGRVEGKVIYETQSTHKLLAAF-----SQASMIHVKGD----VNEETFN-------E--AYMMHTTTSPHYGI 405 (714)
T ss_pred CCcChhhcCCCCCCceEEEEchhhcccch-----hHHhHHHHcCC----CCHHHHH-------H--HHHHHcCCCcHHHH
Confidence 1112345 5 9999999998521 12233322211 1100000 0 00000111222333
Q ss_pred hHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc--c------CCeeecCC---------------C--------
Q 001989 850 ALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK--H------YPILFRGV---------------N-------- 898 (985)
Q Consensus 850 ~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~--g------~~l~~~~~---------------~-------- 898 (985)
.+.+-.|.++|.. ..| ++..++..+.+..++++|.+ + +.+..+.. .
T Consensus 406 ~ASLD~a~~~m~~--~~G-~~l~~~~i~~a~~~R~~l~~~~~~~~~w~~~~~~~~~~~~~~~w~~~p~~~whgf~~~~~~ 482 (714)
T PRK15400 406 VASTETAAAMMKG--NAG-KRLINGSIERAIKFRKEIKRLRTESDGWFFDVWQPDHIDTTECWPLRSDSTWHGFKNIDNE 482 (714)
T ss_pred HHHHHHHHHHHHh--hhh-HHHHHHHHHHHHHHHHHHHhCCCcccCceEEecChhhcccchhcccCccccccCccccccc
Confidence 3333334344432 233 23455667777778877754 2 22211000 0
Q ss_pred ----CceeeEEEEEecCcc-----ccCCCCHHHHHHHHHHCCCccCCCCCCCCCEEEEeccCCCCHHHHHHHHccCChhH
Q 001989 899 ----GTVAHEFIVDLRGLK-----NTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKSWTGIVMLSSPSEK 969 (985)
Q Consensus 899 ----~~~~~~~iv~~~~~~-----~~~g~~~~~v~~~L~~~Gi~~~~~~~p~~~~lris~t~~~t~eeId~~~~~~~l~~ 969 (985)
++. -+.+..+++. .+.|+++..+.+.|.++||.+-... ...+.+.++..+|++++++ +++.|.+
T Consensus 483 ~~~lDP~--Klti~tpgi~~~g~~~~~Gipg~~v~~~L~e~gI~~E~~d---~~~iLfl~s~g~t~~~~~~--L~~aL~~ 555 (714)
T PRK15400 483 HMYLDPI--KVTLLTPGMKKDGTMSDFGIPASIVAKYLDEHGIVVEKTG---PYNLLFLFSIGIDKTKALS--LLRALTD 555 (714)
T ss_pred ccccCCc--eEEEEeCCCCCCccccccCCCHHHHHHHHHHcCCEEEecC---CCeEEEEeCCCCCHHHHHH--HHHHHHH
Confidence 111 1233333221 1247788999999999999875433 3688999999999999999 5566766
Q ss_pred H
Q 001989 970 K 970 (985)
Q Consensus 970 ~ 970 (985)
+
T Consensus 556 f 556 (714)
T PRK15400 556 F 556 (714)
T ss_pred H
Confidence 5
|
|
| >PRK07671 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.1e-13 Score=159.16 Aligned_cols=212 Identities=17% Similarity=0.192 Sum_probs=149.1
Q ss_pred HHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc---h
Q 001989 213 LLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL---K 289 (985)
Q Consensus 213 i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~---~ 289 (985)
..++++.+|++.|.+. ..++.+|++++.+++ +. . ++||+||+++..|++....+...++..|++++.++. +
T Consensus 52 ~~~Le~~lA~l~g~~~--~~~~~sG~aai~~~~-~~-l--~~Gd~Viv~~~~y~~~~~~~~~~~~~~G~~v~~v~~~d~~ 125 (377)
T PRK07671 52 RAALEELIAVLEGGHA--GFAFGSGMAAITAVM-ML-F--SSGDHVILTDDVYGGTYRVMTKVLNRFGIEHTFVDTSNLE 125 (377)
T ss_pred HHHHHHHHHHHhCCCc--eEEeCCHHHHHHHHH-HH-h--CCCCEEEECCCccchHHHHHHHHHhcCCeEEEEECCCCHH
Confidence 4568899999999876 456778887666543 22 2 389999999999998877776656678999999875 4
Q ss_pred hhhc-cCCCEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCCCCCcccceEEEecC-ccccccCCCC
Q 001989 290 DIDY-KSGDVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKPPGELGADIVVGSA-QRFGVPMGYG 366 (985)
Q Consensus 290 ~l~~-l~~~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~~~~~~GaDi~v~s~-k~lg~P~~~G 366 (985)
++++ ++++|++|++.+| |++|.+.|+++|+++||++|++++|| +.++.+....|.++|+||+++|. |+|++|.+
T Consensus 126 ~l~~ai~~~tklV~le~P~NPtg~~~dl~~I~~la~~~g~~lvvD-~a~~~~~~~~p~~~g~Divv~S~sK~l~G~~~-- 202 (377)
T PRK07671 126 EVEEAIRPNTKAIYVETPTNPLLKITDIKKISTIAKEKGLLTIVD-NTFMTPYWQSPISLGADIVLHSATKYLGGHSD-- 202 (377)
T ss_pred HHHHhcCCCCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEE-CCCCccccCChhhhCCeEEEecCcccccCCcc--
Confidence 5666 8889999999998 78999999999999999999999995 34444445566789999999998 87765421
Q ss_pred CCcEEEEEEch-hhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcchHHH
Q 001989 367 GPHAAFLATSQ-EYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKT 445 (985)
Q Consensus 367 GP~~G~l~~~~-~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~ 445 (985)
--.|++.+++ ++.+++. ..|..-| .. ..+. . .|+...+.+-+..
T Consensus 203 -~~~G~~v~~~~~l~~~~~-------------------------~~~~~~g--~~--~~~~---~--a~l~~~~l~tl~~ 247 (377)
T PRK07671 203 -VVAGLVVVNSPELAEDLH-------------------------FVQNSTG--GI--LGPQ---D--SWLLLRGLKTLGI 247 (377)
T ss_pred -ceeEEEEeCcHHHHHHHH-------------------------HHHHhhc--CC--CCHH---H--HHHHHcCcChHHH
Confidence 1246666643 4443331 0000000 00 0111 1 1234455556677
Q ss_pred HHHHHHHHHHHHHHHHhcCCCeE
Q 001989 446 IAQRVHGLAGTFALGLKKLGTVE 468 (985)
Q Consensus 446 i~~~~~~~a~~l~~~L~~~g~~~ 468 (985)
..++..+++.++.+.|++..++.
T Consensus 248 R~~~~~~na~~la~~L~~~~~v~ 270 (377)
T PRK07671 248 RMEEHETNSRAIAEFLNNHPAVN 270 (377)
T ss_pred HHHHHHHHHHHHHHHHHcCCCee
Confidence 78888899999999999875454
|
|
| >PRK07812 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.61 E-value=3.4e-13 Score=156.93 Aligned_cols=144 Identities=16% Similarity=0.163 Sum_probs=112.8
Q ss_pred HHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHH----HHHHCCcEEEEEcC
Q 001989 634 FNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPA----TAAMCGMKIVSVGT 709 (985)
Q Consensus 634 ~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~----~a~~~G~~vv~v~~ 709 (985)
..++++.++++.|.+.+ +.++||+.|+.+++.++. .+|++||++...|+.... .+...|++++.++
T Consensus 71 ~~~Le~~lA~l~g~~~a-v~~sSG~aAi~~al~all--------~~Gd~Vv~~~~~y~~t~~~~~~~l~~~Gi~v~~vd- 140 (436)
T PRK07812 71 QDVVEQRIAALEGGVAA-LLLASGQAAETFAILNLA--------GAGDHIVSSPRLYGGTYNLFHYTLPKLGIEVSFVE- 140 (436)
T ss_pred HHHHHHHHHHHhCCCeE-EEEccHHHHHHHHHHHHh--------CCCCEEEEeCCcchHHHHHHHHHhhcCeEEEEEEC-
Confidence 44788999999998775 556788877765554432 367899998776654332 2344788888885
Q ss_pred CCCCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCccCCcEEE
Q 001989 710 DAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIGADVCH 788 (985)
Q Consensus 710 d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~g~Di~~ 788 (985)
+. .|+++++++++ ++|++|++++| |++|.+. |+++|+++||++|++++||+++..+ .+..|.++|+|+++
T Consensus 141 d~---~d~e~l~~ai~---~~tklV~ie~~sNp~G~v~-Dl~~I~~la~~~gi~liVD~t~a~~--~~~~pl~~GaDivv 211 (436)
T PRK07812 141 DP---DDLDAWRAAVR---PNTKAFFAETISNPQIDVL-DIPGVAEVAHEAGVPLIVDNTIATP--YLIRPLEHGADIVV 211 (436)
T ss_pred CC---CCHHHHHHhCC---CCCeEEEEECCCCCCCeec-CHHHHHHHHHHcCCEEEEECCCccc--ccCCchhcCCCEEE
Confidence 32 38999999997 88999999998 5799998 9999999999999999999988532 33467788999999
Q ss_pred eCCccccc
Q 001989 789 LNLHKTFC 796 (985)
Q Consensus 789 ~s~hK~l~ 796 (985)
.|+||+++
T Consensus 212 ~S~tK~lg 219 (436)
T PRK07812 212 HSATKYLG 219 (436)
T ss_pred EecccccC
Confidence 99999985
|
|
| >PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions | Back alignment and domain information |
|---|
Probab=99.61 E-value=4.6e-14 Score=161.79 Aligned_cols=300 Identities=17% Similarity=0.135 Sum_probs=179.3
Q ss_pred HHHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcCC-C
Q 001989 633 MFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTD-A 711 (985)
Q Consensus 633 ~~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~d-~ 711 (985)
..+++++.+++++|.+.+ +.++||+.|.+.++.++ |.+++++||+|...+.....+....|+++++++++ +
T Consensus 26 ~~~~fE~~~a~~~g~~~~-~~~~sgt~Al~~al~~l-------~~~~gdeVi~p~~t~~~~~~ai~~~G~~pv~~Di~~~ 97 (363)
T PF01041_consen 26 YVEEFEKEFAEYFGVKYA-VAVSSGTSALHLALRAL-------GLGPGDEVIVPAYTFPATASAILWAGAEPVFVDIDPE 97 (363)
T ss_dssp HHHHHHHHHHHHHTSSEE-EEESSHHHHHHHHHHHT-------TGGTTSEEEEESSS-THHHHHHHHTT-EEEEE-BETT
T ss_pred HHHHHHHHHHHHhCCCeE-EEeCChhHHHHHHHHhc-------CCCcCceEecCCCcchHHHHHHHHhccEEEEEeccCC
Confidence 466899999999997764 55678888876666543 23478999999875555556667899999999998 4
Q ss_pred CCCCCHHHHHHHHHhcCCCEEEEEEEcCCCccccccCHHHHHHHHHHcCCEEEEEccccccccCC-CCCCccCCcEEEeC
Q 001989 712 KGNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGL-TSPGYIGADVCHLN 790 (985)
Q Consensus 712 ~g~iD~e~L~~~i~~~~~~t~~Vvv~~pn~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l-~~pg~~g~Di~~~s 790 (985)
++.+|+++++++|+ ++|++|++++ ..|... |+++|.++|+++|++||-|+||+.+.--- ...|.+| |+.++|
T Consensus 98 ~~~id~~~~~~~i~---~~t~ai~~~h--~~G~~~-d~~~i~~~~~~~~i~lIeD~a~a~g~~~~g~~~G~~g-d~~~fS 170 (363)
T PF01041_consen 98 TLNIDPEALEKAIT---PKTKAILVVH--LFGNPA-DMDAIRAIARKHGIPLIEDAAQAFGARYKGRPVGSFG-DIAIFS 170 (363)
T ss_dssp TSSB-HHHHHHHHH---TTEEEEEEE---GGGB----HHHHHHHHHHTT-EEEEE-TTTTT-EETTEETTSSS-SEEEEE
T ss_pred cCCcCHHHHHHHhc---cCccEEEEec--CCCCcc-cHHHHHHHHHHcCCcEEEccccccCceeCCEeccCCC-CceEec
Confidence 69999999999999 8999999987 678887 89999999999999999999996432111 1345554 999999
Q ss_pred Cc--ccccccCCCCCCceEEEEEcc-cccCcCCC-CccccCCCC-CCCCCCC-CCCCCCCcchhhhHHHHHHHHHHHHhc
Q 001989 791 LH--KTFCIPHGGGGPGMGPIGVKK-HLAPFLPS-HPVVSTGGI-PAPEKSQ-PLGTIAAAPWGSALILPISYTYIAMMG 864 (985)
Q Consensus 791 ~h--K~l~~p~g~GGPg~G~i~~~~-~l~~~lp~-~~~g~~~~~-~~~~~~~-~~~~i~s~~~g~~~~~~~a~a~l~~lg 864 (985)
+| |.+ + .| .+|++++++ ++.+.+.. +..|...+. .+...+. ...|..- +...++.+..-|
T Consensus 171 f~~~K~i--~--~g--eGG~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~n~rm----~~~~AAigl~QL---- 236 (363)
T PF01041_consen 171 FHPTKII--T--TG--EGGAVVTNDPELAERARALRNHGRSRDAFRRYRHELPPGYNFRM----SELQAAIGLAQL---- 236 (363)
T ss_dssp SSTTSSS-----SS--S-EEEEESTHHHHHHHHHHTBTTEETSECSTTEESSSS--B-B-----BHHHHHHHHHHH----
T ss_pred CCCCCCC--c--CC--CCeeEEecHHHHHHHhhhhhccCcCccccccccccccCCccccc----HHHHHHHHHHHH----
Confidence 87 444 2 12 347888874 33322210 011111000 0000000 0011111 122222222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCe--eecCCCC--ceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCC--
Q 001989 865 SKGLTEASKIAILNANYMAKRLEKHYPI--LFRGVNG--TVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMS-- 938 (985)
Q Consensus 865 ~eGl~~~~~~~~~~a~~l~~~L~~g~~l--~~~~~~~--~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~-- 938 (985)
+.+.+..++..++++++.+.|.+...+ ....+.. ...+.+.+.++. ....+.+++.+.|.++||.+....
T Consensus 237 -~~L~~~~~~R~~~a~~y~~~L~~~~~~~~~~~~~~~~~~~~~~f~i~~~~---~~~~~rd~l~~~L~~~GI~~~~~~~~ 312 (363)
T PF01041_consen 237 -KRLDEIIARRRENAQRYREALAGIPGIKPPPIPDGAERSSYYRFPIRLPD---EALADRDELVEALRARGIETRPHYPK 312 (363)
T ss_dssp -HTHHHHHHHHHHHHHHHHHHHTTGTTEEEEGCGTTTEEBCESSEEEEETC---CGCSTHHHHHHHHHHTTBEEBCSTSS
T ss_pred -HHhhhhHHHHHHHHHHHHHHHhcCCCcccccccccccccccccccccccc---cccchHHHHHHHHHHCCCcccccccC
Confidence 235555666678888999999874333 1111111 234445666542 001357899999999999765321
Q ss_pred ----CC-------------------CCCEEEEeccCCCCHHHHHHHHccCCh
Q 001989 939 ----WP-------------------VPGTLMIEPTESESKSWTGIVMLSSPS 967 (985)
Q Consensus 939 ----~p-------------------~~~~lris~t~~~t~eeId~~~~~~~l 967 (985)
.| ....|.+-.+...+.+|+++ .+++|
T Consensus 313 pl~~~~~~~~~~~~~~~~~P~ae~l~~r~l~LP~~~~lt~edv~~--I~~~i 362 (363)
T PF01041_consen 313 PLHRQPVYRSYPYYAPGDLPNAERLSQRLLSLPIHPRLTEEDVDY--IAEAI 362 (363)
T ss_dssp CGGGSGGGTTGEEEETSSSHHHHHHHHHEEEEEHSTTSCHHHHHH--HHHHH
T ss_pred chhhhHHHHhcCccccCCCHHHHHHHhCeEECcCCCCCCHHHHHH--Hhhcc
Confidence 01 01456777778899999999 44443
|
The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A .... |
| >COG0399 WecE Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.2e-13 Score=154.85 Aligned_cols=303 Identities=16% Similarity=0.102 Sum_probs=190.6
Q ss_pred HHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHH---HHHCCcEEEEEcCC
Q 001989 634 FNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPAT---AAMCGMKIVSVGTD 710 (985)
Q Consensus 634 ~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~---a~~~G~~vv~v~~d 710 (985)
..++++++++++|.+.+ +.++||+.|...+++++. ..++|+||+|.. ++.+. .-..|+++++|++|
T Consensus 36 v~~FE~~~ae~~G~k~a-va~~sgT~AL~laL~al~-------ig~GDeVI~ps~---TfvATan~i~~~Ga~PVFvDid 104 (374)
T COG0399 36 VRRFEQAFAEYLGVKYA-VAVSSGTAALHLALLALA-------IGPGDEVIVPSF---TFVATANAVLLVGAKPVFVDID 104 (374)
T ss_pred HHHHHHHHHHHhCCCeE-EEecChHHHHHHHHHhcC-------CCCCCEEEecCC---chHHHHHHHHHcCCeEEEEecC
Confidence 45788999999999875 456778877755555332 358999999987 55554 45789999999999
Q ss_pred CC-CCCCHHHHHHHHHhcCCCEEEEEEEcCCCccccccCHHHHHHHHHHcCCEEEEEccccccccCC-CCCCccCCcEEE
Q 001989 711 AK-GNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGL-TSPGYIGADVCH 788 (985)
Q Consensus 711 ~~-g~iD~e~L~~~i~~~~~~t~~Vvv~~pn~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l-~~pg~~g~Di~~ 788 (985)
++ +.+|++.||++|+ ++|++|+..+ ..|..- |+++|.++|++||++|+-|+||+.+..-- ...|.+ .|+.+
T Consensus 105 ~~T~nid~~~ie~aIt---~~tKAIipVh--l~G~~~-dm~~i~~la~~~~l~vIEDaAqa~Ga~y~gk~vGt~-Gd~~~ 177 (374)
T COG0399 105 PDTLNIDPDLIEAAIT---PRTKAIIPVH--LAGQPC-DMDAIMALAKRHGLPVIEDAAQAHGATYKGKKVGSF-GDIGA 177 (374)
T ss_pred CcccCCCHHHHHHHcc---cCCeEEEEeh--hccCCC-CHHHHHHHHHHcCCeEEEEcchhccCeecCcccccc-cceEE
Confidence 76 8999999999998 8899999866 778887 89999999999999999999996433211 234555 47877
Q ss_pred eCCcccccccCCCCCCceEEEEEcc-cccCcCCC-CccccCCCC-CCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcH
Q 001989 789 LNLHKTFCIPHGGGGPGMGPIGVKK-HLAPFLPS-HPVVSTGGI-PAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGS 865 (985)
Q Consensus 789 ~s~hK~l~~p~g~GGPg~G~i~~~~-~l~~~lp~-~~~g~~~~~-~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~ 865 (985)
+|+|-+= +++.| -+|.+.+++ ++.+.+.. +..|...+. .++. ....+... ....+. +++....-
T Consensus 178 fSF~~~K--~ittg--EGGav~tnd~ela~k~~~lr~hG~~~~~~~~y~--~~~~G~N~----rm~~iq---AAigl~QL 244 (374)
T COG0399 178 FSFHATK--NLTTG--EGGAVVTNDEELAEKARSLRNHGLSRDAVFKYL--HEELGYNY----RLTEIQ---AAIGLAQL 244 (374)
T ss_pred EEecCCC--Ccccc--CceEEEeCCHHHHHHHHHHHHhCcCCCccccce--eeeccccc----CHHHHH---HHHHHHHH
Confidence 8775432 22333 346777774 44433210 011211100 0000 00000100 000111 11222223
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcc--CCeeecCCCC-ceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccC----CCC
Q 001989 866 KGLTEASKIAILNANYMAKRLEKH--YPILFRGVNG-TVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGP----TMS 938 (985)
Q Consensus 866 eGl~~~~~~~~~~a~~l~~~L~~g--~~l~~~~~~~-~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~----~~~ 938 (985)
+.+.+..++..+++++..+.|++. +.+....... ...|.+.+.++. .+.+-+.+.+.|.++||... ++.
T Consensus 245 ~~l~~~~~~R~~~a~~Y~~~l~~~~~~~~p~~~~~~~~~~~~~~i~~~~----~~~~R~~l~~~L~~~gi~~~~~~~P~~ 320 (374)
T COG0399 245 ERLDEINERRREIAQIYAEALKGLPGITLPPEPDGAVHAWHLYTILVDE----EGISRDALMESLKEAGVGAVVYFRPLH 320 (374)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCccccCCCCCceeeeeeeEEEecC----CCCCHHHHHHHHHhCCCCceEEeeccc
Confidence 445566666677788888888762 2332222111 334555566541 14677899999999976521 111
Q ss_pred ---------------CCC-----CCEEEEeccCCCCHHHHHHHHccCChhHHHHh
Q 001989 939 ---------------WPV-----PGTLMIEPTESESKSWTGIVMLSSPSEKKLHR 973 (985)
Q Consensus 939 ---------------~p~-----~~~lris~t~~~t~eeId~~~~~~~l~~~~~~ 973 (985)
+|. ...+.+-.....+.+|+++ .++++++++++
T Consensus 321 ~~~~~~~~~~~~~~~lp~ae~~~~r~l~LP~~p~l~~~~~~~--V~~~l~~~~~~ 373 (374)
T COG0399 321 LQPAYRQLGYFPEGDLPNAEDLSERILSLPLHPNLSEEDVDR--VIEALKEVLGS 373 (374)
T ss_pred cchhhhcccccccCCCchHHHHhhCeEEccCCCCCCHHHHHH--HHHHHHHHhcc
Confidence 121 2567777778899999999 77888887753
|
|
| >PRK08363 alanine aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.5e-13 Score=159.67 Aligned_cols=306 Identities=13% Similarity=0.059 Sum_probs=176.5
Q ss_pred hhHHHHHHHHHHHHHHHhC--CCccceec-CcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEE
Q 001989 628 QGYQEMFNNLGEWLCTITG--FDSFSLQP-NAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKI 704 (985)
Q Consensus 628 ~G~~~~~~e~~~~la~l~G--~~~~~~~~-~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~v 704 (985)
+|..++.+.+.+++....| .+...+.. +++++|...++ +.+. +++|.|+++++.|..+...++..|.++
T Consensus 70 ~g~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~---~~~~-----~~gd~Vl~~~p~y~~~~~~~~~~g~~~ 141 (398)
T PRK08363 70 EGLPELREAIVKREKRKNGVDITPDDVRVTAAVTEALQLIF---GALL-----DPGDEILIPGPSYPPYTGLVKFYGGVP 141 (398)
T ss_pred CCcHHHHHHHHHHHHHhcCCCCChhhEEEeCCHHHHHHHHH---HHhC-----CCCCEEEEcCCCCcchHHHHHHcCCEE
Confidence 4655444444444444335 33344444 44455553333 3221 478899999988877777788889988
Q ss_pred EEE-cCCCC-CCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccc--cCHHHHHHHHHHcCCEEEEEccccccc-cC-CC
Q 001989 705 VSV-GTDAK-GNINIEELRKAAEANRDNLSTLMVTYP-STHGVYE--EGIDEICKIIHDNGGQVYMDGANMNAQ-VG-LT 777 (985)
Q Consensus 705 v~v-~~d~~-g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~--~di~eI~~la~~~galliVD~a~~~~~-~~-l~ 777 (985)
+.+ +.+++ +.+|+++|+++++ +++++|++++| |++|.+. .++++|.++|+++|+++++|+++..-. .+ ..
T Consensus 142 v~~~~~~~~~~~~d~~~l~~~~~---~~~~~v~l~~p~NPtG~~~~~~~~~~l~~~a~~~~~~li~Deay~~~~~~~~~~ 218 (398)
T PRK08363 142 VEYRTIEEEGWQPDIDDIRKKIT---EKTKAIAVINPNNPTGALYEKKTLKEILDIAGEHDLPVISDEIYDLMTYEGKHV 218 (398)
T ss_pred EEeccccccCCcCCHHHHHhhCC---cceEEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCeEEEEhhhhhhhccCCccc
Confidence 888 55444 5799999999987 78899999998 5799886 138999999999999999999873210 01 00
Q ss_pred CCCcc-CC--cEEEeCCcccccccCCCCCCceEEEEE--cccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHH
Q 001989 778 SPGYI-GA--DVCHLNLHKTFCIPHGGGGPGMGPIGV--KKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALI 852 (985)
Q Consensus 778 ~pg~~-g~--Di~~~s~hK~l~~p~g~GGPg~G~i~~--~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~ 852 (985)
....+ .. -+++.|++|+|+.| |.++|++++ ++++.+.+....... ... ..+.+..++.
T Consensus 219 ~~~~~~~~~~vi~~~SfSK~~~~~----GlRiG~~~~~~~~~~~~~l~~~~~~~---------~~~--~~~~s~~~q~-- 281 (398)
T PRK08363 219 SPGSLTKDVPVIVMNGLSKVYFAT----GWRLGYIYFVDPEGKLAEVREAIDKL---------ARI--RLCPNTPAQF-- 281 (398)
T ss_pred CHHHcCcCCcEEEEecchhccCCc----cceEEEEEEeCcHHHHHHHHHHHHHH---------hcc--cccCChHHHH--
Confidence 00111 11 24567889987644 788999997 444332221100000 000 0111111111
Q ss_pred HHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhccCCeeecCCCCceeeEEEEEecCccccCCCCHHHHH-HHHHHCC
Q 001989 853 LPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVA-KRLMDYG 931 (985)
Q Consensus 853 ~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~-~~L~~~G 931 (985)
++..+|.. ..+-+++..++..++.+++.+.|++...+.+..+.+.++ +.+.++.. ...+..+++ +.|.++|
T Consensus 282 --~~~~~l~~-~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~p~g~~~--~~~~l~~~---~~~~~~~~~~~~l~~~g 353 (398)
T PRK08363 282 --AAIAGLTG-PMDYLEEYMKKLKERRDYIYKRLNEIPGISTTKPQGAFY--IFPRIEEG---PWKDDKEFVLDVLHEAH 353 (398)
T ss_pred --HHHHHHhC-ChHHHHHHHHHHHHHHHHHHHHHhcCCCCEecCCCeEEE--EEEEeccC---CCCCHHHHHHHHHHhCC
Confidence 12223321 234555666667788888988887621222222223222 22344310 012344554 5567889
Q ss_pred CccCC-CCCC--CCCEEEEeccCCCCHHHHHHHHccCChhHHHHh
Q 001989 932 FHGPT-MSWP--VPGTLMIEPTESESKSWTGIVMLSSPSEKKLHR 973 (985)
Q Consensus 932 i~~~~-~~~p--~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~ 973 (985)
|.+.. ..|+ .++++||++. .+.+++++ .++.|++.+.+
T Consensus 354 V~v~~g~~f~~~~~~~iRis~~--~~~~~l~~--~l~~l~~~~~~ 394 (398)
T PRK08363 354 VLFVHGSGFGEYGAGHFRLVFL--PPVEILEE--AMDRFEEFMRE 394 (398)
T ss_pred EEEeCchhhCCCCCCeEEEEec--CCHHHHHH--HHHHHHHHHHH
Confidence 98643 2232 2478999985 56888888 66777776654
|
|
| >PRK08247 cystathionine gamma-synthase; Reviewed | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.4e-13 Score=157.83 Aligned_cols=228 Identities=18% Similarity=0.180 Sum_probs=157.2
Q ss_pred HHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCch---
Q 001989 213 LLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDLK--- 289 (985)
Q Consensus 213 i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~~--- 289 (985)
..++++.+|++.|.+. ..++.+|++++.++. ++ . ++||+||+++..++.....+...++..|++++++|..
T Consensus 54 ~~~le~~la~l~g~~~--~~~~~sG~~ai~~~~-~l-l--~~Gd~Vl~~~~~y~~t~~~~~~~~~~~G~~v~~vd~~d~~ 127 (366)
T PRK08247 54 RGVLEQAIADLEGGDQ--GFACSSGMAAIQLVM-SL-F--RSGDELIVSSDLYGGTYRLFEEHWKKWNVRFVYVNTASLK 127 (366)
T ss_pred HHHHHHHHHHHhCCCc--EEEEcCHHHHHHHHH-HH-h--CCCCEEEEecCCcCcHHHHHHHHhhccCceEEEECCCCHH
Confidence 3567899999999987 467888888776543 32 2 3889999999999988887776667789999998764
Q ss_pred hhhc-cCCCEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCCCCCcccceEEEecC-ccccccCCCC
Q 001989 290 DIDY-KSGDVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKPPGELGADIVVGSA-QRFGVPMGYG 366 (985)
Q Consensus 290 ~l~~-l~~~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~~~~~~GaDi~v~s~-k~lg~P~~~G 366 (985)
++++ ++++|++|++.+| |++|.+.|+++|+++||++|+++++| +..+.+....|.++|+||+++|. |.++++ |
T Consensus 128 ~l~~~i~~~tklv~le~P~NP~~~~~dl~~I~~la~~~g~~lIvD-~t~~~~~~~~p~~~g~di~i~S~sK~~~g~---~ 203 (366)
T PRK08247 128 AIEQAITPNTKAIFIETPTNPLMQETDIAAIAKIAKKHGLLLIVD-NTFYTPVLQRPLEEGADIVIHSATKYLGGH---N 203 (366)
T ss_pred HHHHhcccCceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEE-CCCccccccCchhcCCcEEEeecceeccCC---C
Confidence 4555 7889999999998 68999999999999999999999995 45555555566778999999998 877532 1
Q ss_pred CCcEEEEEEc-hhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcchHHH
Q 001989 367 GPHAAFLATS-QEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKT 445 (985)
Q Consensus 367 GP~~G~l~~~-~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~ 445 (985)
+--.|++.++ +++.+.+. ..+.. ...|. +++ .+ |+...+-+-+..
T Consensus 204 d~~~G~iv~~~~~l~~~~~-------------------------~~~~~---~g~~~-s~~---~a--~l~~~~l~tl~~ 249 (366)
T PRK08247 204 DVLAGLVVAKGQELCERLA-------------------------YYQNA---AGAVL-SPF---DS--WLLIRGMKTLAL 249 (366)
T ss_pred ceeeeEEecChHHHHHHHH-------------------------HHHHh---cCCCC-ChH---HH--HHHHhccCcHHH
Confidence 2234677765 44443320 00000 01111 111 11 223334455666
Q ss_pred HHHHHHHHHHHHHHHHhcCCCeEEcCCC-CcceEEEecCC
Q 001989 446 IAQRVHGLAGTFALGLKKLGTVEVQGLP-FFDTVKVKCAD 484 (985)
Q Consensus 446 i~~~~~~~a~~l~~~L~~~g~~~~~~~~-~~~~~~~~~~~ 484 (985)
+.++..+++..+.+.|++..++..+..| ...-++|.+++
T Consensus 250 r~~~~~~~a~~l~~~L~~~p~v~~v~~P~~gg~~sf~~~~ 289 (366)
T PRK08247 250 RMRQHEENAKAIAAFLNEQPGVTDVLYPGRGGMLSFRLQD 289 (366)
T ss_pred HHHHHHHHHHHHHHHHHhCCCeeEEecCCcCcEEEEEECC
Confidence 7777899999999999998447643222 33445565544
|
|
| >PLN02721 threonine aldolase | Back alignment and domain information |
|---|
Probab=99.60 E-value=8e-14 Score=159.12 Aligned_cols=273 Identities=15% Similarity=0.106 Sum_probs=172.1
Q ss_pred HHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc----
Q 001989 213 LLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL---- 288 (985)
Q Consensus 213 i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~---- 288 (985)
..++++.+|+++|.+. +.++.+||.+..+++.+.. ..+||+|++++..|.+...... .++..|++++.++.
T Consensus 42 ~~~l~~~la~~~~~~~--~~~~~~Gs~a~~~~l~~~~--~~~gd~Vl~~~~~~~~~~~~~~-~~~~~g~~~~~v~~~~~~ 116 (353)
T PLN02721 42 ALRLEEEMAKIFGKEA--ALFVPSGTMGNLISVLVHC--DVRGSEVILGDNSHIHLYENGG-ISTLGGVHPRTVKNNEDG 116 (353)
T ss_pred HHHHHHHHHHHhCCce--eEEecCccHHHHHHHHHHc--cCCCCeEEEcCccceehhcccc-hhhhcCceeEecCCCcCC
Confidence 3567899999999875 5566777766554444432 1278999999999976655210 13356888887653
Q ss_pred ----hhhhc-cC-------CCEeEEEEEcC--CCCeeecc---HHHHHHHHHhCCcEEEEEecCccccCC----CCCC--
Q 001989 289 ----KDIDY-KS-------GDVCGVLVQYP--GTEGEVLD---YGDFIKNAHANGVKVVMATDLLALTIL----KPPG-- 345 (985)
Q Consensus 289 ----~~l~~-l~-------~~t~~V~v~~p--n~~G~v~d---i~~I~~~a~~~galliV~a~~~~lg~l----~~~~-- 345 (985)
+++++ ++ +++++|+++++ |++|.+.| +++|.++||++|+++++|. ...++.. .++.
T Consensus 117 ~~d~~~l~~~i~~~~~~~~~~~~~v~l~~~~~np~G~~~~~~~l~~l~~l~~~~g~~livD~-a~~~~~~~~~~~~~~~~ 195 (353)
T PLN02721 117 TMDLDAIEAAIRPKGDDHFPTTRLICLENTHANCGGRCLSVEYTDKVGELAKRHGLKLHIDG-ARIFNASVALGVPVHRL 195 (353)
T ss_pred CcCHHHHHHHHHhccCCCCCcceEEEEeccccccCCccccHHHHHHHHHHHHHcCCEEEEEc-hhhhcchhhhCCCHHHH
Confidence 45555 55 68899998764 46788765 7899999999999999953 2222211 1122
Q ss_pred cccceEEEecC-ccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchh
Q 001989 346 ELGADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQ 424 (985)
Q Consensus 346 ~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~ 424 (985)
..++|.++.+. |+|++ |..++++.++++++.+.... . ...++.+. .
T Consensus 196 ~~~~d~~~~s~sK~l~~------~~G~~~~~~~~~~~~~~~~~-----~-------------------~~~~~~~~---~ 242 (353)
T PLN02721 196 VKAADSVSVCLSKGLGA------PVGSVIVGSKSFIRKAKRLR-----K-------------------TLGGGMRQ---V 242 (353)
T ss_pred hhhCCEEEEecccccCC------ceeeEEecCHHHHHhHHHHH-----H-------------------hcCCCeeh---h
Confidence 34899988887 77753 33345666777665431100 0 00000000 0
Q ss_pred HHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEE-cCCCCcceEEEecC----C-HHHHHHHHHHcCce
Q 001989 425 ALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEV-QGLPFFDTVKVKCA----D-AHAIASAAYKIEMN 498 (985)
Q Consensus 425 ~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~-~~~~~~~~~~~~~~----~-~~~v~~~L~~~GI~ 498 (985)
+..+. +++ ..+ .+-++. .++..++.+++.+.|++++++++ +..+..+-+.++.+ . ..++.++|.++||.
T Consensus 243 ~~~~~-~~~-~~l--~~~~~~-~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gi~ 317 (353)
T PLN02721 243 GVLAA-AAL-VAL--QENVPK-LEDDHKKAKLLAEGLNQIKGLRVNVAAVETNIVYFDITDGSRITAEKLCKSLEEHGVL 317 (353)
T ss_pred HHHHH-HHH-HHH--HHHHHH-HHHHHHHHHHHHHHHHhCCCcEEecCCccceEEEEEccCCccccHHHHHHHHHhCCcE
Confidence 11111 111 011 111222 23345678899999998844765 43332233444443 2 77899999999999
Q ss_pred eeeecCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 499 LRVVDSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 499 ~~~~~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
+.....+.+|++++.+++++|+++++++|++
T Consensus 318 v~~~~~~~lR~~~~~~~~~~~i~~~~~~l~~ 348 (353)
T PLN02721 318 LMPGNSSRIRVVTHHQISDSDVQYTLSCFQQ 348 (353)
T ss_pred EecCCCceEEEEecCcCCHHHHHHHHHHHHH
Confidence 9876678999999999999999999999974
|
|
| >PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.8e-13 Score=159.39 Aligned_cols=143 Identities=18% Similarity=0.181 Sum_probs=113.7
Q ss_pred HHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccH----HHHHHCCcEEEEEcC
Q 001989 634 FNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNP----ATAAMCGMKIVSVGT 709 (985)
Q Consensus 634 ~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~----~~a~~~G~~vv~v~~ 709 (985)
..++++.++++.|.+.+ +.++||+.|+.+++.++. .++|+||+++..|+... ..++..|++++.++.
T Consensus 66 ~~~Le~~lA~leg~~~a-l~~~sG~~Ai~~al~~ll--------~~GD~Vlv~~~~y~~t~~~~~~~~~~~Gv~v~~vd~ 136 (431)
T PRK08248 66 TDVFEKRIAALEGGIGA-LAVSSGQAAITYSILNIA--------SAGDEIVSSSSLYGGTYNLFAHTLPKLGITVKFVDP 136 (431)
T ss_pred HHHHHHHHHHHhCCCcE-EEECCHHHHHHHHHHHHh--------CCCCEEEEccCchhhHHHHHHHHHHhCCEEEEEECC
Confidence 34688999999997654 567788887755554432 36889999887665322 234578999999987
Q ss_pred CCCCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCccCCcEEE
Q 001989 710 DAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIGADVCH 788 (985)
Q Consensus 710 d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~g~Di~~ 788 (985)
+ |+++++++++ ++|++|++++| |++|.+. |+++|+++||++|+++++|+++.. +....|.++|+|+++
T Consensus 137 ~-----d~e~l~~ai~---~~tklV~l~sp~NPtG~v~-di~~I~~la~~~gi~vIvD~t~a~--~~~~~pl~~gaDivv 205 (431)
T PRK08248 137 S-----DPENFEAAIT---DKTKALFAETIGNPKGDVL-DIEAVAAIAHEHGIPLIVDNTFAS--PYLLRPIEHGADIVV 205 (431)
T ss_pred C-----CHHHHHHhcC---CCCeEEEEECCCCCCCccc-CHHHHHHHHHHcCCEEEEeCCCCc--cccCChhHcCCCEEE
Confidence 3 8999999997 78999999998 5799998 899999999999999999998752 223456678999999
Q ss_pred eCCccccc
Q 001989 789 LNLHKTFC 796 (985)
Q Consensus 789 ~s~hK~l~ 796 (985)
.|+||+++
T Consensus 206 ~S~tK~lg 213 (431)
T PRK08248 206 HSATKFIG 213 (431)
T ss_pred EcCccccC
Confidence 99999995
|
|
| >PRK07050 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=3.6e-14 Score=163.90 Aligned_cols=210 Identities=18% Similarity=0.065 Sum_probs=145.8
Q ss_pred HHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHH----HHHHCCcEEEEEcC
Q 001989 634 FNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPA----TAAMCGMKIVSVGT 709 (985)
Q Consensus 634 ~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~----~a~~~G~~vv~v~~ 709 (985)
.+++++.++++.|.+.+ +..+||+.|+..+++++. ++||+||+++..|+.+.. .+...|++++.++.
T Consensus 67 ~~~Le~~lA~l~g~~~~-l~~~sgt~Ai~~~l~al~--------~~GD~Vl~~~~~y~~~~~~~~~~~~~~Gi~v~~vd~ 137 (394)
T PRK07050 67 SLALAQRLAEIEGGRHA-LLQPSGLAAISLVYFGLV--------KAGDDVLIPDNAYGPNRDHGEWLARDFGITVRFYDP 137 (394)
T ss_pred HHHHHHHHHHHhCCCeE-EEeccHHHHHHHHHHHHh--------CCCCEEEEecCCcccHHHHHHHHHHhcCeEEEEECC
Confidence 45788999999997653 455778877755554442 478999999887876542 35678999998875
Q ss_pred CCCCCCCHHHHHHHHHhcCCCEEEEEEEcCC-CccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCccCCcEEE
Q 001989 710 DAKGNINIEELRKAAEANRDNLSTLMVTYPS-THGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIGADVCH 788 (985)
Q Consensus 710 d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~pn-~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~g~Di~~ 788 (985)
. |.++++++++ ++|++|++++|+ .+|... |+++|+++||++|+++++|+++.. +.+..|.++|+|+++
T Consensus 138 ~-----~~~~l~~~i~---~~tklV~le~p~Np~~~~~-di~~I~~ia~~~gi~livD~a~a~--~~~~~~l~~GaDi~v 206 (394)
T PRK07050 138 L-----IGAGIADLIQ---PNTRLIWLEAPGSVTMEVP-DVPAITAAARARGVVTAIDNTYSA--GLAFKPFEHGVDISV 206 (394)
T ss_pred C-----CHHHHHHhcC---CCCeEEEEECCCCCCccHh-hHHHHHHHHHHcCCEEEEECCccc--ccccCHHHcCCeEEE
Confidence 3 5678999887 889999999984 688887 899999999999999999999853 334567788999999
Q ss_pred eCCcccccccCCCCCCceEEEEE-cccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHH
Q 001989 789 LNLHKTFCIPHGGGGPGMGPIGV-KKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKG 867 (985)
Q Consensus 789 ~s~hK~l~~p~g~GGPg~G~i~~-~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eG 867 (985)
.|++|+++. .++..+|.+++ ++++.+.+... + ..++...+ + ..+|..+ -|.+.
T Consensus 207 ~S~tK~~~g---~~~~~gG~v~~~~~~~~~~~~~~------------~-~~~G~~~~-----~---~~a~l~l--r~l~t 260 (394)
T PRK07050 207 QALTKYQSG---GSDVLMGATITADAELHAKLKLA------------R-MRLGIGVS-----A---DDCSLVL--RGLPS 260 (394)
T ss_pred EECCceecC---CCCeeEEEEEECCHHHHHHHHHH------------H-HhcCCCCC-----H---HHHHHHH--cCCCc
Confidence 999999952 12222555555 45554433210 0 00111111 1 1233333 34445
Q ss_pred HHHHHHHHHHHHHHHHHHhhcc
Q 001989 868 LTEASKIAILNANYMAKRLEKH 889 (985)
Q Consensus 868 l~~~~~~~~~~a~~l~~~L~~g 889 (985)
+..+.++..+++..+.+.|++.
T Consensus 261 l~~Rl~~~~~~a~~la~~L~~~ 282 (394)
T PRK07050 261 LQVRLAAHDRSALEVAEWLKAR 282 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHhC
Confidence 6667778888899999999863
|
|
| >PRK08249 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=8.7e-14 Score=160.79 Aligned_cols=209 Identities=15% Similarity=0.108 Sum_probs=144.9
Q ss_pred HHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHH----HHHHCCcEEEEEcC
Q 001989 634 FNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPA----TAAMCGMKIVSVGT 709 (985)
Q Consensus 634 ~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~----~a~~~G~~vv~v~~ 709 (985)
.++++++++++.|.+.+ +.+++|.+|+..++.++. .++|+||++...|+.... .+...|++++.++.
T Consensus 66 ~~~le~~lA~l~g~~~~-i~~ssG~~Ai~~~l~all--------~~GD~Vi~~~~~y~~~~~~~~~~~~~~Gi~v~~vd~ 136 (398)
T PRK08249 66 VQAFEEKVRILEGAEAA-TAFSTGMAAISNTLYTFL--------KPGDRVVSIKDTYGGTNKIFTEFLPRMGVDVTLCET 136 (398)
T ss_pred HHHHHHHHHHHhCCCeE-EEeCChHHHHHHHHHHhc--------CCCCEEEEcCCchHHHHHHHHHHHhhCCeEEEEcCC
Confidence 56889999999998764 566778776654444331 368899998876664322 24467999887774
Q ss_pred CCCCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCccCCcEEE
Q 001989 710 DAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIGADVCH 788 (985)
Q Consensus 710 d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~g~Di~~ 788 (985)
.|+++++++|+ ++|++|++++| |++|.+. |+++|+++||++|+++++|+++.... ...|..+++|+++
T Consensus 137 -----~d~e~l~~~i~---~~tklV~ie~p~NPtg~v~-dl~~I~~la~~~gi~livD~t~a~~~--~~~~l~~~~Divv 205 (398)
T PRK08249 137 -----GDHEQIEAEIA---KGCDLLYLETPTNPTLKIV-DIERLAAAAKKVGALVVVDNTFATPI--NQNPLALGADLVI 205 (398)
T ss_pred -----CCHHHHHHhcC---CCCeEEEEECCCCCCCccC-CHHHHHHHHHHcCCEEEEECCcCccc--cCCchhhCCCEEe
Confidence 58999999997 78999999998 5799998 89999999999999999999975322 2345567899999
Q ss_pred eCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHHH
Q 001989 789 LNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGL 868 (985)
Q Consensus 789 ~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl 868 (985)
.|++|+++.+ |.-.+|+++.++++.+.+... + ...+...+ + ..+|..+ -+.+.+
T Consensus 206 ~S~sK~l~g~---~~~~gG~vv~~~~l~~~l~~~------------~-~~~g~~~s-----~---~~a~l~l--~~l~tL 259 (398)
T PRK08249 206 HSATKFLSGH---ADALGGVVCGSKELMEQVYHY------------R-EINGATMD-----P---MSAYLIL--RGMKTL 259 (398)
T ss_pred ccCceecCCC---CCceEEEEECCHHHHHHHHHH------------H-HhcCCCCC-----H---HHHHHHH--hCcchH
Confidence 9999998421 111247777666655443210 0 00111111 1 1223333 344556
Q ss_pred HHHHHHHHHHHHHHHHHhhc
Q 001989 869 TEASKIAILNANYMAKRLEK 888 (985)
Q Consensus 869 ~~~~~~~~~~a~~l~~~L~~ 888 (985)
..+.++..+++..+.+.|++
T Consensus 260 ~~R~~~~~~na~~la~~L~~ 279 (398)
T PRK08249 260 KLRVRQQQESAMALAKYLQT 279 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHc
Confidence 66777888999999999986
|
|
| >TIGR01265 tyr_nico_aTase tyrosine/nicotianamine aminotransferases | Back alignment and domain information |
|---|
Probab=99.60 E-value=3.3e-13 Score=157.09 Aligned_cols=298 Identities=12% Similarity=0.072 Sum_probs=174.8
Q ss_pred HHHHHHHHHhCC------Cccce-ecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEc
Q 001989 636 NLGEWLCTITGF------DSFSL-QPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVG 708 (985)
Q Consensus 636 e~~~~la~l~G~------~~~~~-~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~ 708 (985)
++++.+++++|. +...+ ..+++++|.. ++++.+. .++++|+++++.+..+...++..|++++.++
T Consensus 77 ~lr~~ia~~l~~~~~~~~~~~~ii~t~G~t~al~---~~~~~l~-----~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~ 148 (403)
T TIGR01265 77 AAREAVAEYLSSDLPGKLTADDVVLTSGCSQAIE---ICIEALA-----NPGANILVPRPGFPLYDTRAAFSGLEVRLYD 148 (403)
T ss_pred HHHHHHHHHHHhhcCCCCCHHHEEEecChHHHHH---HHHHHhC-----CCCCEEEEeCCCchhHHHHHHHcCCEEEEec
Confidence 455666666653 23334 4445555553 3333321 3678999998877666666788999999998
Q ss_pred CCC--CCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCcccccc--CHHHHHHHHHHcCCEEEEEccccccc-cC--CCCCC
Q 001989 709 TDA--KGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEE--GIDEICKIIHDNGGQVYMDGANMNAQ-VG--LTSPG 780 (985)
Q Consensus 709 ~d~--~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~--di~eI~~la~~~galliVD~a~~~~~-~~--l~~pg 780 (985)
.++ ++.+|+++++++++ +++++|++++| |++|.+.+ ++++|.++|+++|+++++|+++..-. .+ +....
T Consensus 149 ~~~~~~~~~d~~~l~~~~~---~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~ 225 (403)
T TIGR01265 149 LLPEKDWEIDLDGLEALAD---EKTVAIVVINPSNPCGSVFSRDHLQKIAEVARKLGIPIIADEIYGHMVFGDAPFIPMA 225 (403)
T ss_pred CCcccCCccCHHHHHHHhC---cCccEEEEecCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEccccccccCCCCccchh
Confidence 753 46799999999987 78899999998 57998851 48999999999999999999874211 11 00111
Q ss_pred ccC--Cc-EEEeCCcccccccCCCCCCceEEEEEcc--cc-----cCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhh
Q 001989 781 YIG--AD-VCHLNLHKTFCIPHGGGGPGMGPIGVKK--HL-----APFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSA 850 (985)
Q Consensus 781 ~~g--~D-i~~~s~hK~l~~p~g~GGPg~G~i~~~~--~l-----~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~ 850 (985)
.+. .. +++.|+.|+|+.| |.++|++++.. .+ ...+.... . ...+.+ ...+
T Consensus 226 ~~~~~~~vi~~~S~SK~~~~p----GlRiG~~v~~~~~~~~~~~~~~~~~~~~------------~-~~~~~~--~~~q- 285 (403)
T TIGR01265 226 SFASIVPVLSLGGISKRWVVP----GWRLGWIIIHDPHGIFRDTVLQGLKNLL------------Q-RILGPA--TIVQ- 285 (403)
T ss_pred hhccCCcEEEEeecccccCCC----cceEEEEEEeCchhhhHHHHHHHHHHHh------------h-hhcCCC--hHHH-
Confidence 111 12 5567888987654 67899998742 21 11111000 0 000111 0111
Q ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhccCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHH-HH
Q 001989 851 LILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRL-MD 929 (985)
Q Consensus 851 ~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L-~~ 929 (985)
.++..++......-+++..++..++++++.+.|+...++.+..+.+..+ +.++++........+..++++.| .+
T Consensus 286 ---~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~p~~g~f--~~~~~~~~~~~~~~~~~~~~~~l~~~ 360 (403)
T TIGR01265 286 ---GALPDILENTPQEFFDGKISVLKSNAELCYEELKDIPGLVCPKPEGAMY--LMVKLELELFPEIKDDVDFCEKLVRE 360 (403)
T ss_pred ---HHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHhcCCCceecCCCceeE--EEEeccccccCCCCCHHHHHHHHHHh
Confidence 1112233321223344445566777888888887621222212222222 33454310000012567888886 56
Q ss_pred CCCccCC-CCCCCCCEEEEeccCCCCHHHHHHHHccCChhHHHHh
Q 001989 930 YGFHGPT-MSWPVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHR 973 (985)
Q Consensus 930 ~Gi~~~~-~~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~ 973 (985)
+|+.+.. ..|...+++||++.. .++.+++ .++.|.+++++
T Consensus 361 ~gv~v~pg~~f~~~~~iRis~~~--~~~~l~~--~l~~l~~~~~~ 401 (403)
T TIGR01265 361 ESVICLPGSAFGLPNWVRITITV--PESMLEE--ACSRIKEFCER 401 (403)
T ss_pred CCEEEeCccccCCCCeEEEEecC--CHHHHHH--HHHHHHHHHHh
Confidence 7998643 223346899999973 4778888 66777776654
|
This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley. |
| >PRK06148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=1e-13 Score=176.78 Aligned_cols=341 Identities=17% Similarity=0.197 Sum_probs=207.2
Q ss_pred HHHHHHHHHHhccccCcccccccccccccCCCccccccccccccccccCCCCchhhhhhHHHHHHHHHHHHHHHhCCC-c
Q 001989 571 HELLRYIHLLQSKELSLCHSMIPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFD-S 649 (985)
Q Consensus 571 ~e~~~~l~~l~~~~~~~~~~~~~lG~~t~~~~~~~~~~~~~~~~f~~~~p~~p~e~~~G~~~~~~e~~~~la~l~G~~-~ 649 (985)
.+..+|++.+.+ ...||++++.+..+...+..... +.+.++. +...++.+.|++++..+ .
T Consensus 621 ~dG~~ylD~~~g--------~~~lGH~hp~v~~Ai~~q~~~l~-~~~~~~~----------~~~~~lAe~L~~~~p~~~~ 681 (1013)
T PRK06148 621 NRGRAYLDCFNN--------VCHVGHAHPRVVAAAARQAARLN-TNTRYLH----------DAIVAYAERLTATLPDGLT 681 (1013)
T ss_pred CCCCEEEEcccC--------hhhcCCCCHHHHHHHHHHHhhcC-CcCCcCC----------HHHHHHHHHHHHhCCCCcC
Confidence 444556655432 24589998888776655542211 1111111 12347788888887532 2
Q ss_pred cceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEE-cCCCCcccHHHHHHCC------------cEEEEEcCCCC--CC
Q 001989 650 FSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCII-PVSAHGTNPATAAMCG------------MKIVSVGTDAK--GN 714 (985)
Q Consensus 650 ~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv-~~~~Hg~~~~~a~~~G------------~~vv~v~~d~~--g~ 714 (985)
..++.+||++|++++++.+|.| +++.+||+ ...+||....+....+ -.+..++.... +.
T Consensus 682 ~v~f~nSGsEA~e~AlklAr~~------tGr~~ii~~~~~YHG~t~~a~s~s~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 755 (1013)
T PRK06148 682 VAFFVNSGSEANSLALRLARAH------TGQRDAIVLDHAYHGTTTELIDLSPYKFNRKGGKGRPDHVEVAEVPDSYRGP 755 (1013)
T ss_pred EEEEeCCcHHHHHHHHHHHHHh------cCCCeEEEEcCCccCCCcchhhcCchhhcccCCCCCCCCceEcCCCCccccC
Confidence 3577899999999999999876 23455665 6789997654332111 11222221100 00
Q ss_pred ---CC-------HHHHHHHHH---hcCCCEEEEEEEcC-CCcccccc---CHHHHHHHHHHcCCEEEEEccccccccCCC
Q 001989 715 ---IN-------IEELRKAAE---ANRDNLSTLMVTYP-STHGVYEE---GIDEICKIIHDNGGQVYMDGANMNAQVGLT 777 (985)
Q Consensus 715 ---iD-------~e~L~~~i~---~~~~~t~~Vvv~~p-n~~G~i~~---di~eI~~la~~~galliVD~a~~~~~~~l~ 777 (985)
.| .+++++.++ .+.+++++|+++-. ..-|++.+ -+++|.++|+++|+++|+|+++ .|++
T Consensus 756 ~~~~~~~~~~~~~~~l~~~i~~~~~~~~~iAAvI~EPv~g~gG~i~pp~~yl~~lr~lc~~~g~llI~DEVq----tGfG 831 (1013)
T PRK06148 756 ERWPDAEHGRRFAESVAEQIAAMAAKGRGPAFFIAESIPSVAGQIFLPEGYLREVYAMVRAAGGVCIADEVQ----VGFG 831 (1013)
T ss_pred CCCChhhhHHHHHHHHHHHHHhhhccCCceEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHhCCEEEEEecc----cCCC
Confidence 11 245666554 22356888888753 34566652 2899999999999999999886 3444
Q ss_pred CCCc-c--------CCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchh
Q 001989 778 SPGY-I--------GADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWG 848 (985)
Q Consensus 778 ~pg~-~--------g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g 848 (985)
+.|. + -+|+++++ |.+ ++|-| +|.+++++++.+.+.... ...+++.|
T Consensus 832 RtG~~~~a~e~~gv~PDivt~g--K~l----ggG~P-lgav~~~~ei~~~~~~g~-----------------~~~~Tf~g 887 (1013)
T PRK06148 832 RVGSHWWAFETQGVVPDIVTMG--KPI----GNGHP-MGAVVTTREIADSFDNGM-----------------EYFNTFGG 887 (1013)
T ss_pred CCCCcchhhhhcCCCcceeeec--ccc----cCCcc-eEEEEEcHHHHhhccCCC-----------------ccccCCCC
Confidence 4543 1 27998763 766 44445 666667877765442110 01134667
Q ss_pred hhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhcc---CCee--ecCCCCceeeEEEEEecC---ccccCCCCH
Q 001989 849 SALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKH---YPIL--FRGVNGTVAHEFIVDLRG---LKNTAGIEP 920 (985)
Q Consensus 849 ~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~g---~~l~--~~~~~~~~~~~~iv~~~~---~~~~~g~~~ 920 (985)
+++.++++.+.|..+..+++. ++..+..++|+++|++. ++++ +.+. + .+ +-+.+.. .+.......
T Consensus 888 npla~aaa~a~L~~i~~e~l~---~~~~~~G~~l~~~L~~l~~~~~~i~~VrG~-G-l~--~gvel~~~~~~~~~~~~~~ 960 (1013)
T PRK06148 888 NPVSCAIGLAVLDIIEDEDLQ---RNALEIGNYLLAGLRELQDRFDIIGDVRGM-G-LF--LGIELVTDRKTKAPATAIA 960 (1013)
T ss_pred CHHHHHHHHHHHHHHhhccHH---HHHHHHHHHHHHHHHHHHHhCCCceEEeee-c-eE--EEEEecCCccccCccHHHH
Confidence 888888899999998777654 45667788888888752 2321 1121 1 12 1222210 000000013
Q ss_pred HHHHHHHHHCCCccCCCCCCCCCEEEEeccCCCCHHHHHHHHccCChhHHHHhh
Q 001989 921 EDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRL 974 (985)
Q Consensus 921 ~~v~~~L~~~Gi~~~~~~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~ 974 (985)
..+.+.|.++|+++.... |..+.+||.|+..+|++|||+ ++++|++++.++
T Consensus 961 ~~i~~~~~~~Gvl~~~~g-~~~~vlr~~Ppl~it~~~id~--~l~~l~~~l~~~ 1011 (1013)
T PRK06148 961 RYVKNGARERGILIGTEG-PHDNVLKIRPPLIFSRADADH--LLEVLDDVLAAA 1011 (1013)
T ss_pred HHHHHHHHhCCeEEeccC-CCCCEEEEeCCccCCHHHHHH--HHHHHHHHHHHH
Confidence 467888899999986543 224899999999999999999 889999988764
|
|
| >PRK15481 transcriptional regulatory protein PtsJ; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.1e-13 Score=162.42 Aligned_cols=252 Identities=13% Similarity=0.102 Sum_probs=163.7
Q ss_pred CCCCEEEEcCCCCcccHHHHHHCCcEEEEEcCCCCCCCCHHHHHHHHHhcCCCEEEEEEE-cC-CCccccccCH---HHH
Q 001989 678 HHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVT-YP-STHGVYEEGI---DEI 752 (985)
Q Consensus 678 ~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~-~p-n~~G~i~~di---~eI 752 (985)
.+||.|+++++.++.+...++..|++++.+|++++| +|+++|+++++ +++++++++ +| |++|.+. +. ++|
T Consensus 163 ~pgd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~g-~~~~~l~~~~~---~~~k~i~~~p~p~NPTG~~~-s~~~~~~l 237 (431)
T PRK15481 163 LPGDSVAVEDPCFLSSINMLRYAGFSASPVSVDAEG-MQPEKLERALA---QGARAVILTPRAHNPTGCSL-SARRAAAL 237 (431)
T ss_pred CCCCEEEEeCCCcHHHHHHHHHcCCeEEeeccCCCC-CCHHHHHHHHh---cCCCEEEECCCCCCCCCccC-CHHHHHHH
Confidence 478999999988877777889999999999997665 89999999997 578888887 78 5799997 44 499
Q ss_pred HHHHHHc-CCEEEEEccccccc-cCCCCC--CccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCC
Q 001989 753 CKIIHDN-GGQVYMDGANMNAQ-VGLTSP--GYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTG 828 (985)
Q Consensus 753 ~~la~~~-galliVD~a~~~~~-~~l~~p--g~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~ 828 (985)
.++|+++ ++++++|.++..-. .....+ ....--+++.|+.|+|+ | |.++|++++++++...+....
T Consensus 238 ~~la~~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~-~----GlRiG~~i~~~~~~~~~~~~~----- 307 (431)
T PRK15481 238 RNLLARYPQVLVIIDDHFALLSSSPYHSVIPQTTQRWALIRSVSKALG-P----DLRLAFVASDSATSARLRLRL----- 307 (431)
T ss_pred HHHHHhcCCceEEecCchhhhccCCCCCCCcCCCCCEEEEeeeccccC-C----CceeEEEeCCHHHHHHHHHHH-----
Confidence 9999999 99999999873211 011111 11122367788889886 4 678999998876654432100
Q ss_pred CCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcH--HHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEE
Q 001989 829 GIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGS--KGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEF 905 (985)
Q Consensus 829 ~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~--eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~ 905 (985)
.....+++ .....++..+|.. +. +-+++..+...++.+++.+.|++ ++.+.. +.+..+ +
T Consensus 308 -------~~~~~~~s------~~~q~a~~~~l~~-~~~~~~l~~~~~~~~~~r~~~~~~L~~~~~~~~~--p~gg~f--~ 369 (431)
T PRK15481 308 -------NSGTQWVS------HLLQDLVYACLTD-PEYQARLAQARLFYAQRRQKLARALQQYGIAIPS--PGDGLN--L 369 (431)
T ss_pred -------hccccCCC------HHHHHHHHHHHhC-ccHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccc--CCCeEE--E
Confidence 00011111 1111122233321 21 12444555667778888888876 443322 223332 3
Q ss_pred EEEecCccccCCCCHHHHHHHHHHCCCccCC-CCCCC---CCEEEEeccCCCCHHHHHHHHccCChhHHHH
Q 001989 906 IVDLRGLKNTAGIEPEDVAKRLMDYGFHGPT-MSWPV---PGTLMIEPTESESKSWTGIVMLSSPSEKKLH 972 (985)
Q Consensus 906 iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~-~~~p~---~~~lris~t~~~t~eeId~~~~~~~l~~~~~ 972 (985)
.++++ .+..++++.|.++||.+.. ..|.. .+++||++.. .+++++++ +++.|.+++.
T Consensus 370 ~~~l~-------~~~~~~~~~l~~~gV~v~pg~~f~~~~~~~~iRis~~~-~~~~~i~~--~~~~l~~~~~ 430 (431)
T PRK15481 370 WLPLD-------TDSQATALTLAKSGWLVREGEAFGVSAPSHGLRITLST-LNDAEINR--LAADLHQALN 430 (431)
T ss_pred EEECC-------CCHHHHHHHHHHCCcEEecCCccccCCCCCeEEEEcCC-CChHHHHH--HHHHHHHHhc
Confidence 45553 1467899999999998754 22321 3689999976 35899999 7777777664
|
|
| >PLN03226 serine hydroxymethyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.9e-13 Score=160.78 Aligned_cols=282 Identities=12% Similarity=0.009 Sum_probs=176.7
Q ss_pred HHHHHHhcCCCCcceee---ccchHHHHHHHHHHhhhhcCCCCEEEEcC------CCChhHHHHHHHhhcCCCeEE----
Q 001989 217 QTMIADLTGLPMSNASL---LDEGTAAAEAMAMCNNIQKGKKKTFIIAS------NCHPQTIDICITRADGFDIKV---- 283 (985)
Q Consensus 217 q~~ia~L~g~~~~~~sl---~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~------~~H~s~~~~~~~~a~~~gi~v---- 283 (985)
++..++++|.+.+...+ ..+|+.+..++++++. ++||+|++.+ ..|.+.....+- ...+..+
T Consensus 86 ~~~~~~~f~~~~~~~~~nv~~~SG~~AN~av~~aL~---~pgD~Il~~d~~~gGhl~H~~~~~g~~~--s~~~~~~~~~~ 160 (475)
T PLN03226 86 QKRALEAFRLDPEKWGVNVQPLSGSPANFAVYTALL---QPHDRIMGLDLPHGGHLSHGYQTDGKKI--SATSIYFESMP 160 (475)
T ss_pred HHHHHHHhCCCcceeEEecCcCchHHHHHHHHHHhC---CCCCEEEECCCCcCcchhhhhhhccccc--ccceEEEEeee
Confidence 34678888887744322 2567777888887762 3899999854 344444333211 1122221
Q ss_pred -EE------eCchhhhc-cC-CCEeEEEEEcCCCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCCC-----CCcccc
Q 001989 284 -VV------SDLKDIDY-KS-GDVCGVLVQYPGTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKP-----PGELGA 349 (985)
Q Consensus 284 -~~------v~~~~l~~-l~-~~t~~V~v~~pn~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~~-----~~~~Ga 349 (985)
.+ +|+++|++ +. .+++.|++.. +.+|...|+++|.++||++|++++||+ .++.|++.. |- .++
T Consensus 161 y~~~~~~g~iD~d~Le~~l~~~~pklIv~~~-S~~s~~~D~a~i~~ia~~~ga~LlvD~-AH~~Gli~~~~~~~p~-~~~ 237 (475)
T PLN03226 161 YRLDESTGLIDYDKLEKKAMLFRPKLIIAGA-SAYPRDWDYARMRKIADKVGALLMCDM-AHISGLVAAQEAASPF-EYC 237 (475)
T ss_pred eeecCCCCCcCHHHHHHHHhhcCCeEEEEec-CcCCCccCHHHHHHHHHHcCCEEEEEc-hhhhCcccCCCCCCCC-CCC
Confidence 11 25567776 53 3566555543 457888899999999999999999942 445555432 22 279
Q ss_pred eEEEecC-ccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeeccccccccc--ccccCCCccchhHH
Q 001989 350 DIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIR--RDKATSNICTAQAL 426 (985)
Q Consensus 350 Di~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~ir--re~atsni~t~~~l 426 (985)
|++++++ |+|++|. .|+++++++..+.+.+. .|...+ |.... +..+ ...++++ +...
T Consensus 238 Div~~t~hK~L~GP~------Gg~I~~~~~~~~~~~~g-~~~~~d------~~~~i----~~a~~~~~~g~p~---~~~i 297 (475)
T PLN03226 238 DVVTTTTHKSLRGPR------GGMIFFRKGPKPPKGQG-EGAVYD------YEDKI----NFAVFPGLQGGPH---NHTI 297 (475)
T ss_pred eEEEecCcccccCCC------ceEEEEchhhcccccCC-CccHHH------HHHHh----ccccCCccCCCch---HHHH
Confidence 9999998 7786553 37889888765443221 110000 10000 0011 0122222 2445
Q ss_pred HHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCC-CCcceEEEec--CC--HHHHHHHHHHcCceeee
Q 001989 427 LANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGL-PFFDTVKVKC--AD--AHAIASAAYKIEMNLRV 501 (985)
Q Consensus 427 ~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~-~~~~~~~~~~--~~--~~~v~~~L~~~GI~~~~ 501 (985)
.++.+++ .++...|.++++++..+++++|++.|.+.| ++++.. ..-+.+.|.+ .+ ..++.+.|.+.||.+..
T Consensus 298 aal~aAl--~~i~~~~~~~~~~~~~~na~~L~~~L~~~G-~~l~~~~t~~hi~lv~~~~~gi~~~~~~~~L~~~~I~~nk 374 (475)
T PLN03226 298 AALAVAL--KQAMTPEFKAYQKQVKANAAALANRLMSKG-YKLVTGGTDNHLVLWDLRPLGLTGSRVEKVLDLAHITLNK 374 (475)
T ss_pred HHHHHHH--HHHhCcCHHHHHHHHHHHHHHHHHHHHhCC-CEEEcCCCCCCEEEEEccCCCCCHHHHHHHHHHCCCEECC
Confidence 5555554 566667889999999999999999999987 998853 2223444444 23 77889999999997642
Q ss_pred ---------ecCCeEEE----EeccCCCHHHHHHHHHHHhC
Q 001989 502 ---------VDSNTVTA----SFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 502 ---------~~~~~lri----s~t~~~t~edId~li~aL~~ 529 (985)
+.+..+|+ -.+...+++|++++++.|..
T Consensus 375 ~~~p~~~~~~~~~giRiGt~~lt~~g~~~~d~~~ia~~i~~ 415 (475)
T PLN03226 375 NAVPGDSSALVPGGVRIGTPAMTSRGLVEKDFEKVAEFLHR 415 (475)
T ss_pred CCCCCCcccCCCCCcccCcHHHHHCCCCHHHHHHHHHHHHH
Confidence 23567888 45566788999999998864
|
|
| >PRK07908 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.1e-13 Score=158.10 Aligned_cols=277 Identities=16% Similarity=0.120 Sum_probs=170.8
Q ss_pred HHHHHHHHHHhCCCccceecCcHHH-HHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcCCCCC
Q 001989 635 NNLGEWLCTITGFDSFSLQPNAGAA-GEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKG 713 (985)
Q Consensus 635 ~e~~~~la~l~G~~~~~~~~~sGa~-a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~d~~g 713 (985)
.++++++++.+|.+...+..++|++ +. ..+++ + .++ ++++..+.+..+...++..|++++.+|.+.++
T Consensus 61 ~~lr~aia~~~~~~~~~I~it~Ga~~al---~~~~~-l------~~~-~viv~~P~y~~~~~~~~~~G~~i~~v~~~~~~ 129 (349)
T PRK07908 61 RRARAAVAARHGRTPDEVLLLAGAAEGF---ALLAR-L------RPR-RAAVVHPSFTEPEAALRAAGIPVHRVVLDPPF 129 (349)
T ss_pred HHHHHHHHHHhCcChhhEEECCCHHHHH---HHHHh-c------CCC-eEEEeCCCChHHHHHHHHcCCEEEeeccCccc
Confidence 4677888899998876666555554 43 22232 2 243 46665554444455567899999999998767
Q ss_pred CCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccC-CCCCCccC-Cc-EEEe
Q 001989 714 NINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVG-LTSPGYIG-AD-VCHL 789 (985)
Q Consensus 714 ~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~-l~~pg~~g-~D-i~~~ 789 (985)
.+|++++ + ++++++++++| |++|.+. +.++|.++|++ +.++++|+++..-..+ ........ .+ +++.
T Consensus 130 ~~d~~~l----~---~~~~~i~l~np~NPTG~~~-~~~~l~~l~~~-~~~iIvDe~y~~~~~~~~~~l~~~~~~~~i~i~ 200 (349)
T PRK07908 130 RLDPAAV----P---DDADLVVIGNPTNPTSVLH-PAEQLLALRRP-GRILVVDEAFADAVPGEPESLAGDDLPGVLVLR 200 (349)
T ss_pred CcChhHh----c---cCCCEEEEcCCCCCCCCCc-CHHHHHHHHhc-CCEEEEECcchhhccCCccccccccCCCEEEEe
Confidence 8888754 3 56788999998 4799998 79999999974 8899999987421111 11111111 23 4556
Q ss_pred CCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHHHH
Q 001989 790 NLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLT 869 (985)
Q Consensus 790 s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl~ 869 (985)
|++|+|++| |.++|++++++++.+.+.... ...++++ ....++.+++.....+-++
T Consensus 201 S~SK~~~l~----GlRiG~~~~~~~~~~~~~~~~--------------~~~~~~~------~~~~a~~~~~~~~~~~~~~ 256 (349)
T PRK07908 201 SLTKTWSLA----GLRVGYALGAPDVLARLTRGR--------------AHWPVGT------LQLEAIAACCAPRAVAEAA 256 (349)
T ss_pred ecccccCCc----cceeeeeecCHHHHHHHHhcC--------------CCCCccH------HHHHHHHHHhcccchHHHH
Confidence 889988654 788999999877665442110 0011111 1111111222211223345
Q ss_pred HHHHHHHHHHHHHHHHhhccCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCC-CCC--CCCEEE
Q 001989 870 EASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTM-SWP--VPGTLM 946 (985)
Q Consensus 870 ~~~~~~~~~a~~l~~~L~~g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~-~~p--~~~~lr 946 (985)
+..++..++++++.+.|++. ++.+..+.+..+ +.++++ +...+.+.|.++||.+... .|+ .++++|
T Consensus 257 ~~~~~~~~~r~~l~~~L~~~-~~~~~~p~~g~~--~~~~~~--------~~~~~~~~l~~~gI~v~~g~~f~~~~~~~vR 325 (349)
T PRK07908 257 ADAARLAADRAEMVAGLRAV-GARVVDPAAAPF--VLVRVP--------DAELLRKRLRERGIAVRRGDTFPGLDPDYLR 325 (349)
T ss_pred HHHHHHHHHHHHHHHHHHhC-CcEeccCCCceE--EEEECC--------cHHHHHHHHHhCCEEEEECCCCCCCCCCeEE
Confidence 55566777888898999762 332222222222 344543 2578888999999987532 232 258999
Q ss_pred EeccCCCCHHHHHHHHccCChhHHH
Q 001989 947 IEPTESESKSWTGIVMLSSPSEKKL 971 (985)
Q Consensus 947 is~t~~~t~eeId~~~~~~~l~~~~ 971 (985)
|++ .+.+|+++ +++.|++++
T Consensus 326 is~---~~~~~~~~--l~~al~~~~ 345 (349)
T PRK07908 326 LAV---RPRAEVPV--LVQALAEIL 345 (349)
T ss_pred EEe---CCCccHHH--HHHHHHHHH
Confidence 999 68889999 777777654
|
|
| >TIGR00699 GABAtrns_euk 4-aminobutyrate aminotransferase, eukaryotic type | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.1e-13 Score=161.47 Aligned_cols=325 Identities=13% Similarity=0.075 Sum_probs=188.7
Q ss_pred ccccccccCCCcccccc-ccc-cccccccCCCCchhhhhhHHHHHHHHHHHHHHHhCCC-ccceecCcHHHHHHHHHHHH
Q 001989 592 IPLGSCTMKLNATTEMM-PVT-WPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFD-SFSLQPNAGAAGEYAGLMVI 668 (985)
Q Consensus 592 ~~lG~~t~~~~~~~~~~-~~~-~~~f~~~~p~~p~e~~~G~~~~~~e~~~~la~l~G~~-~~~~~~~sGa~a~~a~l~ai 668 (985)
..||++++.+..+...+ ... ...... ++. ....++.+++.+.+++++.-+ ...++.+||++|++++++.+
T Consensus 70 ~~lGh~~p~i~~Ai~~q~~~~~l~~~~~-~~~------~~~~~la~~l~~~l~~~~p~~~~~v~f~~SGsEAvE~AlKlA 142 (464)
T TIGR00699 70 IPIGYNNPALLKAAQSPEMATTLINRPA-LGN------FPSKDWAKILKEGILKVAPKGQDQVWTGMSGSDANELAFKAA 142 (464)
T ss_pred hcCCCCCHHHHHHHHHHHHHHhhccccc-CCc------HHHHHHHHHHHHhHHhhCCCCcCEEEEeCCcHHHHHHHHHHH
Confidence 45788877777765542 111 111111 111 111223333334345565321 23577799999999999999
Q ss_pred HHHHHhcCC-------------------C--CCCEEEE-cCCCCcccHHHHHHCCc-----------EEEEEcCCCC---
Q 001989 669 RAYHKARGD-------------------H--HRNVCII-PVSAHGTNPATAAMCGM-----------KIVSVGTDAK--- 712 (985)
Q Consensus 669 r~~~~~~g~-------------------~--~~~~IIv-~~~~Hg~~~~~a~~~G~-----------~vv~v~~d~~--- 712 (985)
|.|...++. + ++.+||. ..++||....+....|- .+..+|....
T Consensus 143 r~~~~~~~r~~~~~~t~~~~~~~~~~~~~g~~r~~ii~~~~syHG~t~~als~t~~~~~~~~~~~~~~~~~~p~p~~~~~ 222 (464)
T TIGR00699 143 FMYYRSKQRGYQADFSEEENESCMDNQAPGSPDLSILSFKGAFHGRLFGSLSTTRSKPIHKLDIPAFDWPQAPFPSLKYP 222 (464)
T ss_pred HHHHHhcCCCcccccccccccccccccccCCcCCEEEEECCCcCCccHHHHHhcCCccccccCCCCCCceecCCCCcccc
Confidence 887532210 0 1235665 67899987765443221 1223332210
Q ss_pred -----------CCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccC----HHHHHHHHHHcCCEEEEEccccccccCC
Q 001989 713 -----------GNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEG----IDEICKIIHDNGGQVYMDGANMNAQVGL 776 (985)
Q Consensus 713 -----------g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~d----i~eI~~la~~~galliVD~a~~~~~~~l 776 (985)
...++++++++++++.+++++|+++-. ...|++. + +++|.++|+++|+++|+|+++ .|+
T Consensus 223 ~~~~~~~~~~~~~~~l~~l~~~l~~~~~~iAAvI~EPv~g~~G~~~-~~~~yl~~lr~lc~~~g~lLI~DEV~----tGf 297 (464)
T TIGR00699 223 LEEHVKENAKEEQRCLEEVEDLIKKWHKPVAAIIVEPIQSEGGDNH-ASPDFFRKLRDITKKHNVAFIVDEVQ----TGV 297 (464)
T ss_pred cccccccchhHHHHHHHHHHHHHHhcCCcEEEEEEeCCCCCCCCcC-CCHHHHHHHHHHHHHcCCEEEEeeee----eCC
Confidence 012467788888765567999998753 3457665 5 999999999999999999887 233
Q ss_pred CCCCcc------C----CcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcc
Q 001989 777 TSPGYI------G----ADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAP 846 (985)
Q Consensus 777 ~~pg~~------g----~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~ 846 (985)
.+.|.+ | +|+++++ |.++ +| |++..++.+...-+ ....+++
T Consensus 298 GrtG~~fa~e~~gv~~~PDi~t~g--K~lg----~g----G~~~~~~~~~~~~~-------------------~~~~~T~ 348 (464)
T TIGR00699 298 GATGKFWAHEHWNLDDPPDMVTFS--KKFQ----TA----GYFFHDPAFRPNKP-------------------YRQFNTW 348 (464)
T ss_pred CCCcchhHHHhcCCCCCCCEEEeh--hhhc----cC----CccccchhccCCCC-------------------cccccCC
Confidence 444432 2 8998763 7762 12 23322221110000 0112345
Q ss_pred hhhhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhcc---CC-eeecCCCCceeeEEEEEecCccccCCCCHHH
Q 001989 847 WGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKH---YP-ILFRGVNGTVAHEFIVDLRGLKNTAGIEPED 922 (985)
Q Consensus 847 ~g~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~g---~~-l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~ 922 (985)
.|++..++++.+.|..+..+++. ++..+..++|.++|++. +. ++-..........+.+.++. ......
T Consensus 349 ~gnp~~~aaa~a~L~~l~~~~l~---~~~~~~g~~l~~~L~~l~~~~~~~i~~vRg~G~Glm~gie~~~-----~~~~~~ 420 (464)
T TIGR00699 349 MGDPSRALILREIIQEIKRKDLL---ENVAHVGDYLYTGLEDLQKKYPEFIQNLRGKGRGTFIAWDTPD-----EAKRDK 420 (464)
T ss_pred CCCHHHHHHHHHHHHHHHhcCHH---HHHHHHHHHHHHHHHHHHHhCCCceeeecccCeEEEEEEecCC-----HHHHHH
Confidence 66777888888888888766544 35566677888888652 33 21110000111112333320 112567
Q ss_pred HHHHHHHCCCccCCCCCCCCCEEEEeccCCCCHHHHHHHHccCChhHH
Q 001989 923 VAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKSWTGIVMLSSPSEKK 970 (985)
Q Consensus 923 v~~~L~~~Gi~~~~~~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~ 970 (985)
+.+.+.++|+++.... .+.|||+|+..+|++|||. ++++|+++
T Consensus 421 i~~~~~~~Gvl~~~~g---~~~ir~~Ppl~it~~eid~--~~~~l~~~ 463 (464)
T TIGR00699 421 LLKKARNNGVNIGGCG---VKAIRLRPMLVFQKHHADI--FLEIISKI 463 (464)
T ss_pred HHHHHHHCCcEEecCC---CCeEEEeCCCCCCHHHHHH--HHHHHHHh
Confidence 8889999999985442 3789999999999999999 66777664
|
Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase. |
| >TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.2e-14 Score=164.39 Aligned_cols=210 Identities=17% Similarity=0.126 Sum_probs=145.9
Q ss_pred HHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHH----HHHCCcEEEEEcC
Q 001989 634 FNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPAT----AAMCGMKIVSVGT 709 (985)
Q Consensus 634 ~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~----a~~~G~~vv~v~~ 709 (985)
..++++.++++.|.+.+ +.++||+.|+.+++.++. +++|+||+++..++..... .+..|+++..++.
T Consensus 52 ~~~lE~~lA~l~g~~~~-~~~~sG~~Ai~~al~all--------~~GD~Vl~~~~~y~~t~~~~~~~~~~~gi~v~~~d~ 122 (377)
T TIGR01324 52 HFALQDAMCELEGGAGC-YLYPSGLAAVTNSILAFV--------KAGDHVLMVDSAYEPTRYFCDIVLKRMGVDITYYDP 122 (377)
T ss_pred HHHHHHHHHHHhCCCcE-EEECcHHHHHHHHHHHhc--------CCCCEEEEcCCCcHHHHHHHHHHHHhcCcEEEEECC
Confidence 34788999999998764 445678777755554432 4789999987655433322 3457888888765
Q ss_pred CCCCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCccCCcEEE
Q 001989 710 DAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIGADVCH 788 (985)
Q Consensus 710 d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~g~Di~~ 788 (985)
+ +.++++++++ ++|++|++++| |.+|.+. |+++|+++||++|++++||++|..+ .+..|.++|+|+++
T Consensus 123 ~-----~~e~l~~~i~---~~tklV~lesp~Np~g~~~-dl~~I~~la~~~g~~livD~t~a~g--~~~~pl~~gaDivv 191 (377)
T TIGR01324 123 L-----IGEDIATLIQ---PNTKVLFLEAPSSITFEIQ-DIPAIAKAARNPGIVIMIDNTWAAG--LLFKPLEHGVDISI 191 (377)
T ss_pred C-----CHHHHHHhcC---CCceEEEEECCCCCCCcHH-HHHHHHHHHHHcCCEEEEECCCccc--cccCccccCceEEE
Confidence 3 3388999887 88999999998 5688887 8999999999999999999998643 34568889999999
Q ss_pred eCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHHH
Q 001989 789 LNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGL 868 (985)
Q Consensus 789 ~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl 868 (985)
.|+||+++.+ ++-.+|+++.+++....+.... ...+...+ ...+|..++ |.+-+
T Consensus 192 ~S~tK~l~G~---~d~~gG~v~~~~~~~~~l~~~~-------------~~~G~~l~--------p~~a~~~~r--gl~tl 245 (377)
T TIGR01324 192 QAGTKYLVGH---SDIMIGTVVANARTWDQLREHS-------------YLMGQMVD--------ADDAYTTLR--GLRTL 245 (377)
T ss_pred ecCceeccCC---CCceEEEEEeCHHHHHHHHHHH-------------HHhCCCCC--------HHHHHHHHh--hhhhH
Confidence 9999999522 2234688888765543321100 00111111 122444444 33455
Q ss_pred HHHHHHHHHHHHHHHHHhhcc
Q 001989 869 TEASKIAILNANYMAKRLEKH 889 (985)
Q Consensus 869 ~~~~~~~~~~a~~l~~~L~~g 889 (985)
..+.++..+++..+++.|++.
T Consensus 246 ~~R~~~~~~~a~~la~~L~~~ 266 (377)
T TIGR01324 246 GVRLKQHQESSLAIAKWLSEQ 266 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHhC
Confidence 566788899999999999863
|
This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys. |
| >PRK06084 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.1e-13 Score=160.96 Aligned_cols=235 Identities=19% Similarity=0.160 Sum_probs=154.4
Q ss_pred HHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc---hh
Q 001989 214 LNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL---KD 290 (985)
Q Consensus 214 ~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~---~~ 290 (985)
.++++.+|++.|.+. +.++.+|++++.+++.++. ++||+||++...|+.....+....+..|+++.+++. ++
T Consensus 61 ~~Le~~lA~l~g~~~--~l~~ssG~~Ai~~al~al~---~~Gd~Vl~~~~~Y~~t~~~~~~~l~~~gi~v~~~d~~d~e~ 135 (425)
T PRK06084 61 DVLEQRVAALEGGVG--ALAVASGMAAITYAIQTIA---EAGDNIVSVAKLYGGTYNLLAHTLPRIGIETRFAAHDDIAA 135 (425)
T ss_pred HHHHHHHHHHhCCCc--eeEehhHHHHHHHHHHHHh---CCCCEEEEeCCCcchHHHHHHHhcccceeEEEEECCCCHHH
Confidence 357799999999764 6678899988887776652 378999999999887777776555567889888754 56
Q ss_pred hhc-cCCCEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCCCCCcccceEEEecC-ccccccCCCCC
Q 001989 291 IDY-KSGDVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKPPGELGADIVVGSA-QRFGVPMGYGG 367 (985)
Q Consensus 291 l~~-l~~~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~~~~~~GaDi~v~s~-k~lg~P~~~GG 367 (985)
+++ ++++|++|++.+| |++|.+.|+++|+++||++|++++|| +.++.+....|.++|+||++.|+ |++++| |.
T Consensus 136 le~ai~~~tklV~lesp~NPtG~v~dl~~I~~la~~~~i~vVvD-~a~a~~~~~~p~~~gaDivv~S~tK~l~G~---g~ 211 (425)
T PRK06084 136 LEALIDERTKAVFCESIGNPAGNIIDIQALADAAHRHGVPLIVD-NTVATPVLCRPFEHGADIVVHSLTKYIGGH---GT 211 (425)
T ss_pred HHHHhccCCcEEEEeCCCCCCCeecCHHHHHHHHHHcCCEEEEE-CCCcccccCChhhcCCCEEEECchhccccc---cc
Confidence 666 7888999999988 89999999999999999999999994 45666666677789999999998 877653 22
Q ss_pred CcEEEEEEchhhH-hcCCCceeeeeecCCCCcceeeecccccccc-------cc---cccCCCccchhHHHHHHHHHHHH
Q 001989 368 PHAAFLATSQEYK-RMMPGRIVGVSIDSSGKPALRVAMQTREQHI-------RR---DKATSNICTAQALLANMAAMYAV 436 (985)
Q Consensus 368 P~~G~l~~~~~~~-~~lp~~~vG~t~d~~g~~~~~l~l~tre~~i-------rr---e~atsni~t~~~l~a~~aa~~l~ 436 (985)
.-+|++..+.... ..+..+ .++-...+... +.+.+ .+.+. +| ..+. +. .+...-| |+.
T Consensus 212 ~~gG~v~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~--~~~~g~~~~~~~~~~~~~~~~-g~----~l~~~~a--~l~ 280 (425)
T PRK06084 212 SIGGIVVDSGKFPWAEHKER-FALLNTPDPSY-HGVTY--TEAFGPAAFIGRCRVVPLRNM-GA----ALSPFNA--FLI 280 (425)
T ss_pred ceeEEEEeCCccchhhcccc-ccccccCCccc-ccchh--hhhcchHHHHHHHHHHHHHhc-CC----CCCHHHH--HHH
Confidence 2345555433211 111001 01000000000 11100 00000 00 0111 11 0111122 345
Q ss_pred HhCcchHHHHHHHHHHHHHHHHHHHhcCCCeE
Q 001989 437 YHGPEGLKTIAQRVHGLAGTFALGLKKLGTVE 468 (985)
Q Consensus 437 ~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~ 468 (985)
+.|-+.+..+.++..+++..+++.|++.+.++
T Consensus 281 lrgl~tl~~R~~~~~~na~~la~~L~~~p~v~ 312 (425)
T PRK06084 281 LQGLETLALRMERHTENALKVARYLQQHPQVA 312 (425)
T ss_pred HcCcCcHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 66777788888899999999999999985454
|
|
| >PRK05994 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.60 E-value=3.5e-13 Score=157.22 Aligned_cols=154 Identities=18% Similarity=0.189 Sum_probs=120.3
Q ss_pred HHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHH----HHHHCCcEEEEEcC
Q 001989 634 FNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPA----TAAMCGMKIVSVGT 709 (985)
Q Consensus 634 ~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~----~a~~~G~~vv~v~~ 709 (985)
..++++.++++.|.+. .+.++||++|+.+++.++. +++++||++...|+.... .+...|++++.++.
T Consensus 65 ~~~le~~lA~l~g~~~-al~~~SG~~Ai~~al~all--------~pGd~VIv~~~~y~~t~~~~~~~~~~~G~~v~~vd~ 135 (427)
T PRK05994 65 NAVLEERVAALEGGTA-ALAVASGHAAQFLVFHTLL--------QPGDEFIAARKLYGGSINQFGHAFKSFGWQVRWADA 135 (427)
T ss_pred HHHHHHHHHHHhCCCc-EEEEcCHHHHHHHHHHHHh--------CCCCEEEEecCcchhHHHHHHHHHHhcCcEEEEECC
Confidence 3478899999999876 4667888888865555432 377899998776664332 24568999999886
Q ss_pred CCCCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCccCCcEEE
Q 001989 710 DAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIGADVCH 788 (985)
Q Consensus 710 d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~g~Di~~ 788 (985)
+ |+++++++++ ++|++|++++| |++|.+. |+++|+++||++|+++++|+++..+. ...|-++|+|+++
T Consensus 136 ~-----d~~~l~~ai~---~~tklV~vesp~NptG~v~-dl~~I~~la~~~gi~livD~a~a~~~--~~~pl~~gaDivv 204 (427)
T PRK05994 136 D-----DPASFERAIT---PRTKAIFIESIANPGGTVT-DIAAIAEVAHRAGLPLIVDNTLASPY--LIRPIEHGADIVV 204 (427)
T ss_pred C-----CHHHHHHhcC---cCCeEEEEECCCCCCCeec-CHHHHHHHHHHcCCEEEEECCccccc--cCCccccCCcEEE
Confidence 3 8999999997 78999999998 5799988 89999999999999999999985333 3466778999999
Q ss_pred eCCcccccccCCCCCCceEEEE
Q 001989 789 LNLHKTFCIPHGGGGPGMGPIG 810 (985)
Q Consensus 789 ~s~hK~l~~p~g~GGPg~G~i~ 810 (985)
.|+||+++.+ |++-+|+++
T Consensus 205 ~S~tK~lgg~---~~~~gG~v~ 223 (427)
T PRK05994 205 HSLTKFLGGH---GNSMGGIIV 223 (427)
T ss_pred EcCccccCCC---CCcEEEEEE
Confidence 9999998532 334455555
|
|
| >PRK08776 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.8e-13 Score=158.46 Aligned_cols=210 Identities=18% Similarity=0.187 Sum_probs=142.4
Q ss_pred HHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCccc----HHHHHHCCcEEEEEcC
Q 001989 634 FNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTN----PATAAMCGMKIVSVGT 709 (985)
Q Consensus 634 ~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~----~~~a~~~G~~vv~v~~ 709 (985)
..++++.++++.|.+. .+.+++|++|+..++. .+. .++|+|+++...|+.. ...+...|++++.++.
T Consensus 62 ~~~Le~~lA~l~g~~~-~v~~~sG~~Ai~~~l~---all-----~pGD~Vvv~~p~Y~~t~~~~~~~~~~~g~~v~~v~~ 132 (405)
T PRK08776 62 RDLLGEALAELEGGAG-GVITATGMGAINLVLN---ALL-----QPGDTLVVPHDAYGGSWRLFNALAKKGHFALITADL 132 (405)
T ss_pred HHHHHHHHHHHhCCCc-eEEEcCHHHHHHHHHH---HHh-----CCCCEEEEccCCchHHHHHHHHHHHhcCcEEEEECC
Confidence 4578899999999764 4566677766533333 322 4788999987655542 2224567888888875
Q ss_pred CCCCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCccCCcEEE
Q 001989 710 DAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIGADVCH 788 (985)
Q Consensus 710 d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~g~Di~~ 788 (985)
.|+++|+++++ ++|++|++++| |++|.+. |+++|+++|+++|+++++|+++.. +....|..+|+|+++
T Consensus 133 -----~d~~~l~~~i~---~~tklV~l~~P~NPtG~v~-dl~~I~~la~~~gi~vIvD~a~a~--~~~~~pl~~gaDivv 201 (405)
T PRK08776 133 -----TDPRSLADALA---QSPKLVLIETPSNPLLRIT-DLRFVIEAAHKVGALTVVDNTFLS--PALQKPLEFGADLVL 201 (405)
T ss_pred -----CCHHHHHHhcC---cCCeEEEEECCCCCCCccC-CHHHHHHHHHHcCCEEEEECCCcc--cccCCcccccCCEEE
Confidence 38999999997 78999999999 5799997 999999999999999999999853 223467778999999
Q ss_pred eCCcccccccCCCCCCceEEEEEc-ccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHH
Q 001989 789 LNLHKTFCIPHGGGGPGMGPIGVK-KHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKG 867 (985)
Q Consensus 789 ~s~hK~l~~p~g~GGPg~G~i~~~-~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eG 867 (985)
+|+||+|+.+ |+-.+|+++++ +++.+.+... + ...+... + +. .+|..+ .|.+-
T Consensus 202 ~S~tK~l~g~---~~~~~G~vv~~~~~l~~~l~~~------------~-~~~g~~~-s----~~---~a~l~~--~gl~t 255 (405)
T PRK08776 202 HSTTKYINGH---SDVVGGAVVARDAELHQQLVWW------------A-NALGLTG-S----PF---DAFLTL--RGLRT 255 (405)
T ss_pred ecCceeecCC---CCceEEEEEeCCHHHHHHHHHH------------H-HhcCCCC-C----HH---HHHHHH--hhhCc
Confidence 9999999522 11225666664 4443332100 0 0011111 1 11 123333 34445
Q ss_pred HHHHHHHHHHHHHHHHHHhhcc
Q 001989 868 LTEASKIAILNANYMAKRLEKH 889 (985)
Q Consensus 868 l~~~~~~~~~~a~~l~~~L~~g 889 (985)
+..+.++..+++..+.+.|++.
T Consensus 256 l~~r~~~~~~na~~la~~L~~~ 277 (405)
T PRK08776 256 LDARLRVHQENADAIAALLDGH 277 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHcC
Confidence 6677788899999999999863
|
|
| >PRK05166 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.7e-13 Score=157.78 Aligned_cols=281 Identities=15% Similarity=0.159 Sum_probs=177.6
Q ss_pred HHHHHHHHHhCCCccceecCcHHH-HHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcCCCCCC
Q 001989 636 NLGEWLCTITGFDSFSLQPNAGAA-GEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKGN 714 (985)
Q Consensus 636 e~~~~la~l~G~~~~~~~~~sGa~-a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~d~~g~ 714 (985)
++++.+++++|.+...+..++|++ +. ..+++.+. .++|+|+++.+.|+.+...++..|++++.++.++++.
T Consensus 75 ~lr~~ia~~~~~~~~~i~~t~G~~~~l---~~~~~~~~-----~~gd~vli~~P~y~~~~~~~~~~g~~~~~v~~~~~~~ 146 (371)
T PRK05166 75 ALREAIAARTGVPADRIILGNGSEDLI---AVICRAVL-----RPGDRVVTLYPSFPLHEDYPTMMGARVERVTVTPDLG 146 (371)
T ss_pred HHHHHHHHHhCcCHHHEEEcCCHHHHH---HHHHHHhc-----CCCCEEEEcCCChHHHHHHHHHcCCeEEEeecCCCCC
Confidence 577888999998776666666654 33 22333321 4678999988766666666788999999999987788
Q ss_pred CCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccCHHHHHHHHHH--cCCEEEEEccccccccCCCCCC------ccCC-
Q 001989 715 INIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHD--NGGQVYMDGANMNAQVGLTSPG------YIGA- 784 (985)
Q Consensus 715 iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~di~eI~~la~~--~galliVD~a~~~~~~~l~~pg------~~g~- 784 (985)
+|+++++++++ +++++|++++| |++|.+. +.+++.++++. .++++++|+++..-...-..+. ..+.
T Consensus 147 ~~~~~l~~~~~---~~~~~v~l~~p~NPtG~~~-~~~~~~~l~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~ 222 (371)
T PRK05166 147 FDLDALCAAVA---RAPRMLMFSNPSNPVGSWL-TADQLARVLDATPPETLIVVDEAYAEYAAGDDYPSALTLLKARGLP 222 (371)
T ss_pred CCHHHHHHhhh---cCCCEEEEeCCCCCCCCCC-CHHHHHHHHHhCCCCcEEEEECcHHHhcCCcCcccHHHHHhhcCCC
Confidence 99999999997 67888999999 5799987 67777666654 4789999998732111000010 1111
Q ss_pred cEEEeCCcccccccCCCCCCceEEEEEc-ccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHh
Q 001989 785 DVCHLNLHKTFCIPHGGGGPGMGPIGVK-KHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMM 863 (985)
Q Consensus 785 Di~~~s~hK~l~~p~g~GGPg~G~i~~~-~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~l 863 (985)
-|++.|+.|.|++ .|.++|++++. +++.+.+... ....++++ ..+ .++.+.+.
T Consensus 223 vi~i~SfSK~~~l----~GlRiG~~i~~~~~l~~~~~~~--------------~~~~~~~~--~~q----~~~~~~l~-- 276 (371)
T PRK05166 223 WIVLRTFSKAYGL----AGLRVGYGLVSDPELVGLLDRV--------------RTPFNVNG--AAQ----AAALAALD-- 276 (371)
T ss_pred EEEEeechHhhhc----chhheeeeecCCHHHHHHHHHh--------------ccCCCCCH--HHH----HHHHHHhc--
Confidence 2567788888865 47899998764 4554433110 00111211 111 11122222
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCC-CCC
Q 001989 864 GSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMS-WPV 941 (985)
Q Consensus 864 g~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~-~p~ 941 (985)
..+-+++..+...++.+++.+.|++ ++.+ .++.+ .+ +.++++ .+..++.+.|.++||.+.... +..
T Consensus 277 ~~~~~~~~~~~~~~~r~~l~~~L~~~g~~~--~p~~g-~f--l~~~~~-------~~~~~l~~~l~~~gi~v~p~~~~~~ 344 (371)
T PRK05166 277 DEEHLAKGVALALAERERLKKELAEMGYRI--APSRA-NF--LFFDAR-------RPASAVAEALLRQGVIVKPWKQPGF 344 (371)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHCcCee--CCCcC-CE--EEEeCC-------CCHHHHHHHHHHCCeEEecCCCCCC
Confidence 2233455455566777888888886 4432 22222 22 234432 357889999999999875432 224
Q ss_pred CCEEEEeccCCCCHHHHHHHHccCChhHHH
Q 001989 942 PGTLMIEPTESESKSWTGIVMLSSPSEKKL 971 (985)
Q Consensus 942 ~~~lris~t~~~t~eeId~~~~~~~l~~~~ 971 (985)
.+++||+++ +.++.++ +++.|++++
T Consensus 345 ~~~iRi~~~---~~~~~~~--l~~~l~~i~ 369 (371)
T PRK05166 345 ETFIRVSIG---SPEENDH--FVAALDKVL 369 (371)
T ss_pred CCeEEEEcC---CHHHHHH--HHHHHHHHh
Confidence 589999994 6788888 666666654
|
|
| >PRK08297 L-lysine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=9.6e-14 Score=162.54 Aligned_cols=343 Identities=15% Similarity=0.165 Sum_probs=204.3
Q ss_pred HHHHHHHHHhccccCcccccccccccccCCCc--ccccccccccc-c-cccCCCCchhhhhhHHHHHHHHHHHHHHHhCC
Q 001989 572 ELLRYIHLLQSKELSLCHSMIPLGSCTMKLNA--TTEMMPVTWPS-F-ANIHPFAPADQAQGYQEMFNNLGEWLCTITGF 647 (985)
Q Consensus 572 e~~~~l~~l~~~~~~~~~~~~~lG~~t~~~~~--~~~~~~~~~~~-f-~~~~p~~p~e~~~G~~~~~~e~~~~la~l~G~ 647 (985)
+..+|++.+++-. ...||++++.+.. +...+...... . .+..... +...++.+.++++++-
T Consensus 43 dG~~ylD~~~g~~------~~~lGh~~p~v~~~~ai~~ql~~l~~~~~~~~~~~~---------~~~~~la~~l~~~~~p 107 (443)
T PRK08297 43 TGRRYLDMFTFFA------SSALGMNHPALADDPEFRAELGRAALNKPSNSDVYT---------VEMARFVDTFARVLGD 107 (443)
T ss_pred CCCEeeecccCHh------hhcCCCCChHHhhHHHHHHHHHHhhhhccccCCcCC---------HHHHHHHHHHHhhcCC
Confidence 4556776655432 3468999888876 55444322110 0 1111111 1234567777777621
Q ss_pred C--ccceecCcHHHHHHHHHHHHHHHHH----hcCC--CCCCEEEE-cCCCCcccHHHHHHCCcE-----------EEEE
Q 001989 648 D--SFSLQPNAGAAGEYAGLMVIRAYHK----ARGD--HHRNVCII-PVSAHGTNPATAAMCGMK-----------IVSV 707 (985)
Q Consensus 648 ~--~~~~~~~sGa~a~~a~l~air~~~~----~~g~--~~~~~IIv-~~~~Hg~~~~~a~~~G~~-----------vv~v 707 (985)
+ ...++.+||++|++++++.+|.|.. .+|. +++.+||. ...+||....+....|.. ...+
T Consensus 108 ~~~~~v~f~~SGsEAve~AlKlAr~~~~~~~~~~g~~~~~r~kii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~ 187 (443)
T PRK08297 108 PELPHLFFVDGGALAVENALKVAFDWKSRKNEARGIDPALGTKVLHLRGAFHGRSGYTLSLTNTDPRKTARFPKFDWPRI 187 (443)
T ss_pred CCCCEEEEeCchHHHHHHHHHHHHHHhhccccccCCCCCCCceEEEECCCcCCcchhhhhhcCCcccccccCCCCCcccc
Confidence 1 2357789999999999999988742 1332 12456775 678999876665433210 0011
Q ss_pred cCCC-----CC----------CCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccc---cCHHHHHHHHHHcCCEEEEEcc
Q 001989 708 GTDA-----KG----------NINIEELRKAAEANRDNLSTLMVTYP-STHGVYE---EGIDEICKIIHDNGGQVYMDGA 768 (985)
Q Consensus 708 ~~d~-----~g----------~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~---~di~eI~~la~~~galliVD~a 768 (985)
|... .+ ..|++++++.+.++.+++++|+++-. ..-|++. ..+++|.++|+++|+++|+|++
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~iAavI~EPi~g~~G~~~pp~~yl~~lr~lc~~~g~llI~DEV 267 (443)
T PRK08297 188 DNPKLRFPLPGEDLEEVEALEAEALAQARAAFERHPHDIACFIAEPIQGEGGDNHFRPEFFAAMRELCDEHDALLIFDEV 267 (443)
T ss_pred CCCCCCCCCcccccchhhHHHHHHHHHHHHHHHhCCCcEEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEech
Confidence 1100 00 01356677788766678999988743 3456653 2589999999999999999988
Q ss_pred ccccccCCCCCCcc--------CCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCC
Q 001989 769 NMNAQVGLTSPGYI--------GADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLG 840 (985)
Q Consensus 769 ~~~~~~~l~~pg~~--------g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~ 840 (985)
+. |+.+.|.+ .+|+++++ |.+ |.+|++..+ ++....... +.. ..
T Consensus 268 ~t----GfGRtG~~~a~~~~gv~PDiv~~g--K~l--------~~~a~l~~~-~i~~~~~~~-~~~------------~~ 319 (443)
T PRK08297 268 QT----GVGLTGTAWAYQQLGVRPDIVAFG--KKT--------QVCGIMAGR-RVDEVEDNV-FAV------------SS 319 (443)
T ss_pred hh----ccCccchHHHHHhcCCCCCEEEec--ccc--------cccceecch-HHHHhhhhh-ccC------------cc
Confidence 63 44445432 37999763 765 223444433 221111000 000 00
Q ss_pred CCCCcchhhhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhcc---CCee---ecCCCCceeeEEEEEecCccc
Q 001989 841 TIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKH---YPIL---FRGVNGTVAHEFIVDLRGLKN 914 (985)
Q Consensus 841 ~i~s~~~g~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~g---~~l~---~~~~~~~~~~~~iv~~~~~~~ 914 (985)
...+++.|+++.++++.+.|..+..+++. ++..++.+++.++|++. ++.+ +.+. + .+ +.+.+..
T Consensus 320 ~~~~T~~gnpl~~aaa~a~L~~l~~~~l~---~~~~~~g~~l~~~L~~l~~~~~~~~~~vrg~-G-~~--~~i~~~~--- 389 (443)
T PRK08297 320 RINSTWGGNLVDMVRARRILEVIEEDGLV---ENAARQGEYLLARLEELAAEFPAVVSNVRGR-G-LM--CAFDLPT--- 389 (443)
T ss_pred ccCCCCCccHHHHHHHHHHHHHHHhcCHH---HHHHHHHHHHHHHHHHHHHHCCCcceeeecc-c-eE--EEEEecC---
Confidence 12234556778888888888888766543 45667778888888651 2211 1121 2 12 2344431
Q ss_pred cCCCCHHHHHHHHHHCCCccCCCCCCCCCEEEEeccCCCCHHHHHHHHccCChhHHHHhh
Q 001989 915 TAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRL 974 (985)
Q Consensus 915 ~~g~~~~~v~~~L~~~Gi~~~~~~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~ 974 (985)
......+.+.|.++|+++.... .+.+|++|+..+|++|||+ +++.|++++.++
T Consensus 390 --~~~~~~~~~~l~~~Gvl~~~~~---~~~lr~~P~l~~t~~eid~--~l~~l~~~l~~~ 442 (443)
T PRK08297 390 --TADRDEVIRRLWEEGVLVLPCG---ERSIRFRPALTVTTEEIDA--AIDALRRALPEV 442 (443)
T ss_pred --HHHHHHHHHHHHHCCEEEecCC---CCeEEEECCccCCHHHHHH--HHHHHHHHHHhh
Confidence 1124578889999999874332 2689999999999999999 788898888754
|
|
| >PRK05994 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.8e-13 Score=159.60 Aligned_cols=152 Identities=23% Similarity=0.251 Sum_probs=122.8
Q ss_pred HHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc---hh
Q 001989 214 LNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL---KD 290 (985)
Q Consensus 214 ~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~---~~ 290 (985)
.++++.+|++.|.+. +.++.+|++++++++.++ .. +||+||++...|+.....+...++..|++++++|. ++
T Consensus 66 ~~le~~lA~l~g~~~--al~~~SG~~Ai~~al~al-l~--pGd~VIv~~~~y~~t~~~~~~~~~~~G~~v~~vd~~d~~~ 140 (427)
T PRK05994 66 AVLEERVAALEGGTA--ALAVASGHAAQFLVFHTL-LQ--PGDEFIAARKLYGGSINQFGHAFKSFGWQVRWADADDPAS 140 (427)
T ss_pred HHHHHHHHHHhCCCc--EEEEcCHHHHHHHHHHHH-hC--CCCEEEEecCcchhHHHHHHHHHHhcCcEEEEECCCCHHH
Confidence 457789999999876 668889998888777665 33 89999999999998887776656678999999876 45
Q ss_pred hhc-cCCCEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCCCCCcccceEEEecC-ccccccCCCCC
Q 001989 291 IDY-KSGDVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKPPGELGADIVVGSA-QRFGVPMGYGG 367 (985)
Q Consensus 291 l~~-l~~~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~~~~~~GaDi~v~s~-k~lg~P~~~GG 367 (985)
+++ ++++|++|++.+| |++|.+.|+++|+++||++|++++|| +.++.+....|-++|+|+++.|+ |.+++| ||
T Consensus 141 l~~ai~~~tklV~vesp~NptG~v~dl~~I~~la~~~gi~livD-~a~a~~~~~~pl~~gaDivv~S~tK~lgg~---~~ 216 (427)
T PRK05994 141 FERAITPRTKAIFIESIANPGGTVTDIAAIAEVAHRAGLPLIVD-NTLASPYLIRPIEHGADIVVHSLTKFLGGH---GN 216 (427)
T ss_pred HHHhcCcCCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEE-CCccccccCCccccCCcEEEEcCccccCCC---CC
Confidence 666 7889999999988 88999999999999999999999994 35565666677789999999998 766543 34
Q ss_pred CcEEEEE
Q 001989 368 PHAAFLA 374 (985)
Q Consensus 368 P~~G~l~ 374 (985)
+-+|++.
T Consensus 217 ~~gG~v~ 223 (427)
T PRK05994 217 SMGGIIV 223 (427)
T ss_pred cEEEEEE
Confidence 5556554
|
|
| >PRK08636 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=3.6e-13 Score=156.77 Aligned_cols=308 Identities=12% Similarity=0.116 Sum_probs=188.1
Q ss_pred hhhHHHHHHHHHHHHHHHhCCC--cc-ceecCcHHH-HHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCc
Q 001989 627 AQGYQEMFNNLGEWLCTITGFD--SF-SLQPNAGAA-GEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGM 702 (985)
Q Consensus 627 ~~G~~~~~~e~~~~la~l~G~~--~~-~~~~~sGa~-a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~ 702 (985)
.+|..++.+.+.+++.+.+|.+ .. .+..++|++ |.. ++++.+. .++|.|+++++.+..+...++..|+
T Consensus 70 ~~G~~~lR~~ia~~l~~~~~~~~~~~~~I~it~G~~~al~---~~~~~l~-----~~gd~Vlv~~P~y~~~~~~~~~~g~ 141 (403)
T PRK08636 70 SKGIYKLRLAICNWYKRKYNVDLDPETEVVATMGSKEGYV---HLVQAIT-----NPGDVAIVPDPAYPIHSQAFILAGG 141 (403)
T ss_pred CCCCHHHHHHHHHHHHHHhCCCCCCCCeEEECCChHHHHH---HHHHHhC-----CCCCEEEEcCCCCcchHHHHHhcCC
Confidence 4687777777777777777754 33 465555654 443 3333321 4789999999988777777889999
Q ss_pred EEEEEcCC--CCCCCCHHHH----HHHHHhcCCCEEEEEEEcC-CCccccc--cCHHHHHHHHHHcCCEEEEEcccccc-
Q 001989 703 KIVSVGTD--AKGNINIEEL----RKAAEANRDNLSTLMVTYP-STHGVYE--EGIDEICKIIHDNGGQVYMDGANMNA- 772 (985)
Q Consensus 703 ~vv~v~~d--~~g~iD~e~L----~~~i~~~~~~t~~Vvv~~p-n~~G~i~--~di~eI~~la~~~galliVD~a~~~~- 772 (985)
+++.+|.+ .++.+|++++ ++++++.++++++|++++| |++|.+. ..+++|.++|+++++++++|.++..-
T Consensus 142 ~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~i~~~~P~NPTG~~~s~~~~~~l~~~a~~~~~~II~De~Y~~l~ 221 (403)
T PRK08636 142 NVHKMPLEYNEDFELDEDQFFENLEKALRESSPKPKYVVVNFPHNPTTATVEKSFYERLVALAKKERFYIISDIAYADIT 221 (403)
T ss_pred EEEEEeccccccCccChhhhhhHHHHHHhhccCCceEEEEeCCCCCCCccCCHHHHHHHHHHHHHcCcEEEEeccchhhc
Confidence 99999874 3467898754 5555544467899999998 5799886 24788999999999999999987421
Q ss_pred ccCCCCC--Ccc--CCc--EEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcc
Q 001989 773 QVGLTSP--GYI--GAD--VCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAP 846 (985)
Q Consensus 773 ~~~l~~p--g~~--g~D--i~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~ 846 (985)
..+...+ ..+ ..| +.+.|+.|+|+.| |.++|+++.++++...+.... . ....+.++
T Consensus 222 ~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~----GlRiG~iv~~~~li~~~~~~~-~-----------~~~~~~~~-- 283 (403)
T PRK08636 222 FDGYKTPSILEVEGAKDVAVESYTLSKSYNMA----GWRVGFVVGNKKLVGALKKIK-S-----------WLDYGMFT-- 283 (403)
T ss_pred cCCCCCCChhcCCCccccEEEEEecccccCCc----cceeeeeeCCHHHHHHHHHHH-H-----------HhcccCCh--
Confidence 1111001 111 123 4467888988654 789999998877654432110 0 00001111
Q ss_pred hhhhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHH
Q 001989 847 WGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAK 925 (985)
Q Consensus 847 ~g~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~ 925 (985)
..+. +++ .++. -..+-+++..+...++.+++.+.|++ ++.+. .+.+..+ +.++++... .+.+..++++
T Consensus 284 ~~q~---~~~-~~~~-~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~--~p~~g~~--~~~~l~~~~--~~~~~~~l~~ 352 (403)
T PRK08636 284 PIQV---AAT-IALD-GDQSCVEEIRETYRKRRDVLIESFANAGWELQ--KPRASMF--VWAKIPEPA--RHLGSLEFSK 352 (403)
T ss_pred HHHH---HHH-HHHh-CcHHHHHHHHHHHHHHHHHHHHHHHHCCCccc--CCCcceE--EEEECCCcc--CCCCHHHHHH
Confidence 0111 111 1221 12333445555567777888888876 33332 2222222 345654100 0234678887
Q ss_pred HHH-HCCCccCC-CCCC--CCCEEEEeccCCCCHHHHHHHHccCChhHHHHhhc
Q 001989 926 RLM-DYGFHGPT-MSWP--VPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRLK 975 (985)
Q Consensus 926 ~L~-~~Gi~~~~-~~~p--~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~~ 975 (985)
.|. ++||.+.. ..|. ..+++||++. .+.+++++ .++.|++.+++++
T Consensus 353 ~ll~~~gV~v~pg~~f~~~~~~~iRi~~~--~~~~~l~~--~~~rl~~~l~~~~ 402 (403)
T PRK08636 353 QLLTEAKVAVSPGIGFGEYGDEYVRIALI--ENENRIRQ--AARNIKKFLKELE 402 (403)
T ss_pred HHHHhCCEEEecchhhCcCCCCeEEEEec--CCHHHHHH--HHHHHHHHHHhhc
Confidence 755 67988643 2232 2479999996 57888888 7788888776644
|
|
| >PRK07811 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=9.1e-14 Score=160.41 Aligned_cols=207 Identities=21% Similarity=0.211 Sum_probs=142.9
Q ss_pred HHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHH-H---HHCCcEEEEEcC
Q 001989 634 FNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPAT-A---AMCGMKIVSVGT 709 (985)
Q Consensus 634 ~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~-a---~~~G~~vv~v~~ 709 (985)
..++++.++++.|.+.. +.+++|+.|+.+++.++. .++|+||+++..|+..... . ...|++++.++.
T Consensus 63 ~~~Le~~lA~~~g~~~~-i~~~sG~~Ai~~~l~all--------~~Gd~Vl~~~~~y~~t~~~~~~~~~~~gi~~~~~d~ 133 (388)
T PRK07811 63 RTALEEQLAALEGGAYG-RAFSSGMAATDCLLRAVL--------RPGDHIVIPNDAYGGTFRLIDKVFTRWGVEYTPVDL 133 (388)
T ss_pred HHHHHHHHHHHhCCCce-EEeCCHHHHHHHHHHHHh--------CCCCEEEEcCCCchHHHHHHHHhCcCCCeEEEEeCC
Confidence 45788999999998875 344667776655544432 4788999988766643322 2 235888888875
Q ss_pred CCCCCCCHHHHHHHHHhcCCCEEEEEEEcCC-CccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCccCCcEEE
Q 001989 710 DAKGNINIEELRKAAEANRDNLSTLMVTYPS-THGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIGADVCH 788 (985)
Q Consensus 710 d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~pn-~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~g~Di~~ 788 (985)
.|+++|+++++ ++|++|++++|+ ++|.+. |+++|+++||++|+++++|+++.. +....|..+|+|+++
T Consensus 134 -----~d~e~l~~~i~---~~tklV~ie~p~NPtg~~~-dl~~I~~la~~~gi~lIvD~a~a~--~~~~~p~~~gaDivv 202 (388)
T PRK07811 134 -----SDLDAVRAAIT---PRTKLIWVETPTNPLLSIT-DIAALAELAHDAGAKVVVDNTFAS--PYLQQPLALGADVVV 202 (388)
T ss_pred -----CCHHHHHHhcC---cCCeEEEEECCCCCcceec-CHHHHHHHHHHcCCEEEEECCCCc--cccCCchhhCCcEEE
Confidence 48999999997 789999999995 689988 999999999999999999998753 223456667999999
Q ss_pred eCCcccccccCCCCCCc---eEEEEEcc-cccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhc
Q 001989 789 LNLHKTFCIPHGGGGPG---MGPIGVKK-HLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMG 864 (985)
Q Consensus 789 ~s~hK~l~~p~g~GGPg---~G~i~~~~-~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg 864 (985)
+|++|+|+ ||+ +|++++++ ++...+.... ..++...+ +. .+|..+. +
T Consensus 203 ~S~sK~l~------g~~~~~gG~vv~~~~~l~~~~~~~~-------------~~~g~~~s-----~~---~a~l~~~--~ 253 (388)
T PRK07811 203 HSTTKYIG------GHSDVVGGALVTNDEELDEAFAFLQ-------------NGAGAVPG-----PF---DAYLTLR--G 253 (388)
T ss_pred ecCceeec------CCCCcEEEEEEECCHHHHHHHHHHH-------------HhcCCCCC-----HH---HHHHHHh--c
Confidence 99999984 443 68777764 4433332100 00111111 11 1233333 3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcc
Q 001989 865 SKGLTEASKIAILNANYMAKRLEKH 889 (985)
Q Consensus 865 ~eGl~~~~~~~~~~a~~l~~~L~~g 889 (985)
.+.+..+.++..+++..+++.|++.
T Consensus 254 L~tl~~R~~~~~~na~~la~~L~~~ 278 (388)
T PRK07811 254 LKTLAVRMDRHSENAEAVAEFLAGH 278 (388)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHhC
Confidence 3445666777888999999999863
|
|
| >PRK08776 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=3.1e-13 Score=156.51 Aligned_cols=212 Identities=16% Similarity=0.151 Sum_probs=149.0
Q ss_pred HHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc---hh
Q 001989 214 LNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL---KD 290 (985)
Q Consensus 214 ~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~---~~ 290 (985)
.++++.+|++.|.+. ..++.+|++++..+++++ . ++||+|+++...|+.....++.+++..|++++.++. ++
T Consensus 63 ~~Le~~lA~l~g~~~--~v~~~sG~~Ai~~~l~al-l--~pGD~Vvv~~p~Y~~t~~~~~~~~~~~g~~v~~v~~~d~~~ 137 (405)
T PRK08776 63 DLLGEALAELEGGAG--GVITATGMGAINLVLNAL-L--QPGDTLVVPHDAYGGSWRLFNALAKKGHFALITADLTDPRS 137 (405)
T ss_pred HHHHHHHHHHhCCCc--eEEEcCHHHHHHHHHHHH-h--CCCCEEEEccCCchHHHHHHHHHHHhcCcEEEEECCCCHHH
Confidence 446789999999754 457777887776666554 2 389999999999988777777666678899988865 45
Q ss_pred hhc-cCCCEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCCCCCcccceEEEecC-ccccccCCCCC
Q 001989 291 IDY-KSGDVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKPPGELGADIVVGSA-QRFGVPMGYGG 367 (985)
Q Consensus 291 l~~-l~~~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~~~~~~GaDi~v~s~-k~lg~P~~~GG 367 (985)
+++ ++++|++|++.+| |++|.+.|+++|+++||++|++++|| +.++.+....|.++|+|++++|+ |.|++|- +
T Consensus 138 l~~~i~~~tklV~l~~P~NPtG~v~dl~~I~~la~~~gi~vIvD-~a~a~~~~~~pl~~gaDivv~S~tK~l~g~~---~ 213 (405)
T PRK08776 138 LADALAQSPKLVLIETPSNPLLRITDLRFVIEAAHKVGALTVVD-NTFLSPALQKPLEFGADLVLHSTTKYINGHS---D 213 (405)
T ss_pred HHHhcCcCCeEEEEECCCCCCCccCCHHHHHHHHHHcCCEEEEE-CCCcccccCCcccccCCEEEecCceeecCCC---C
Confidence 666 7788999999998 89999999999999999999999995 34444555567789999999998 7776541 1
Q ss_pred CcEEEEEEc-hhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcchHHHH
Q 001989 368 PHAAFLATS-QEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTI 446 (985)
Q Consensus 368 P~~G~l~~~-~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i 446 (985)
--+|.+.++ +++.+++-. .+...| .+ .+++ .+ |+...|.+-++.+
T Consensus 214 ~~~G~vv~~~~~l~~~l~~-------------------------~~~~~g---~~-~s~~---~a--~l~~~gl~tl~~r 259 (405)
T PRK08776 214 VVGGAVVARDAELHQQLVW-------------------------WANALG---LT-GSPF---DA--FLTLRGLRTLDAR 259 (405)
T ss_pred ceEEEEEeCCHHHHHHHHH-------------------------HHHhcC---CC-CCHH---HH--HHHHhhhCcHHHH
Confidence 124555554 444433300 000001 11 1122 11 1233455566778
Q ss_pred HHHHHHHHHHHHHHHhcCCCeE
Q 001989 447 AQRVHGLAGTFALGLKKLGTVE 468 (985)
Q Consensus 447 ~~~~~~~a~~l~~~L~~~g~~~ 468 (985)
.++..+++..+.+.|++...++
T Consensus 260 ~~~~~~na~~la~~L~~~p~v~ 281 (405)
T PRK08776 260 LRVHQENADAIAALLDGHAAVN 281 (405)
T ss_pred HHHHHHHHHHHHHHHHcCCCee
Confidence 8888999999999999875454
|
|
| >PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.59 E-value=7.4e-14 Score=162.61 Aligned_cols=143 Identities=17% Similarity=0.136 Sum_probs=115.4
Q ss_pred HHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHH----HHHCCcEEEEEcC
Q 001989 634 FNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPAT----AAMCGMKIVSVGT 709 (985)
Q Consensus 634 ~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~----a~~~G~~vv~v~~ 709 (985)
..++++.++++.|.+.+ +.++||+.|+..++.++ . .++|+||++...|+..... +...|++++++++
T Consensus 66 ~~~le~~lA~l~g~~~a-v~~sSGt~Al~~al~~l---l-----~~Gd~Vi~~~~~y~~t~~~~~~~l~~~Gi~v~~vd~ 136 (433)
T PRK08134 66 VAVLEERVAALEGGVGA-IATASGQAALHLAIATL---M-----GAGSHIVASSALYGGSHNLLHYTLRRFGIETTFVKP 136 (433)
T ss_pred HHHHHHHHHHHhCCCcE-EEeCCHHHHHHHHHHHH---h-----CCCCEEEEeCCccHHHHHHHHHHHhhCCeEEEEECC
Confidence 56889999999998774 66778888775554433 1 3678999988767643222 3457999999997
Q ss_pred CCCCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCccCCcEEE
Q 001989 710 DAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIGADVCH 788 (985)
Q Consensus 710 d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~g~Di~~ 788 (985)
+ |+++++++|+ ++|++|++++| |++|.+. |+++|+++||++|++++||+++..+. +..|.++|+|+++
T Consensus 137 ~-----d~~~l~~~i~---~~TklV~~e~~~np~g~v~-Di~~I~~la~~~gi~livD~t~a~~~--~~~pl~~GaD~vv 205 (433)
T PRK08134 137 G-----DIDGWRAAIR---PNTRLLFGETLGNPGLEVL-DIPTVAAIAHEAGVPLLVDSTFTTPY--LLRPFEHGADLVY 205 (433)
T ss_pred C-----CHHHHHHhcC---CCCeEEEEECCCcccCccc-CHHHHHHHHHHcCCEEEEECCCcccc--cCCchhcCCCEEE
Confidence 4 8999999998 89999999998 5689988 99999999999999999999986443 3457788999999
Q ss_pred eCCccccc
Q 001989 789 LNLHKTFC 796 (985)
Q Consensus 789 ~s~hK~l~ 796 (985)
+|.||+++
T Consensus 206 ~S~tK~l~ 213 (433)
T PRK08134 206 HSATKFLG 213 (433)
T ss_pred eccccccC
Confidence 99999984
|
|
| >PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.59 E-value=3.6e-14 Score=165.11 Aligned_cols=144 Identities=17% Similarity=0.213 Sum_probs=113.8
Q ss_pred HHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHH----HHHHCCcEEEEEcC
Q 001989 634 FNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPA----TAAMCGMKIVSVGT 709 (985)
Q Consensus 634 ~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~----~a~~~G~~vv~v~~ 709 (985)
..++++.++++.|.+. .+.++||++|+.++++++. .+||+||++...|+.+.. .+...|+++++++
T Consensus 71 ~~~le~~la~l~g~~~-~v~fsSG~~Ai~~al~~ll--------~~Gd~VI~~~~~y~~t~~~~~~~l~~~Gi~v~~vd- 140 (437)
T PRK05613 71 VEALENRIASLEGGVH-AVAFASGQAAETAAILNLA--------GAGDHIVTSPRLYGGTETLFLVTLNRLGIEVTFVE- 140 (437)
T ss_pred HHHHHHHHHHHhCCCe-EEEeCCHHHHHHHHHHHhc--------CCCCEEEECCCccHHHHHHHHHHHHhcCeEEEEEC-
Confidence 5678999999999864 4666778877754444331 468899998877776532 2456899999997
Q ss_pred CCCCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCccCCcEEE
Q 001989 710 DAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIGADVCH 788 (985)
Q Consensus 710 d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~g~Di~~ 788 (985)
++ .|+++++++|+ ++|++|+++++ |++|.+. |+++|+++||++|++++||++++. +.+..|.++|+|+++
T Consensus 141 ~~---~d~e~l~~~l~---~~tk~V~~e~~~Np~~~v~-di~~I~~la~~~gi~livD~t~a~--g~~~~p~~~GaDivv 211 (437)
T PRK05613 141 NP---DDPESWQAAVQ---PNTKAFFGETFANPQADVL-DIPAVAEVAHRNQVPLIVDNTIAT--AALVRPLELGADVVV 211 (437)
T ss_pred CC---CCHHHHHHhCC---ccCeEEEEECCCCCCCccc-CHHHHHHHHHHcCCeEEEECCCcc--ccccChHHhCCCEEE
Confidence 32 28999999998 78998988876 6788887 999999999999999999999853 334567788999999
Q ss_pred eCCccccc
Q 001989 789 LNLHKTFC 796 (985)
Q Consensus 789 ~s~hK~l~ 796 (985)
+|+||+++
T Consensus 212 ~S~~K~l~ 219 (437)
T PRK05613 212 ASLTKFYT 219 (437)
T ss_pred eeccceec
Confidence 99999884
|
|
| >COG2008 GLY1 Threonine aldolase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.59 E-value=3.1e-14 Score=154.61 Aligned_cols=289 Identities=18% Similarity=0.120 Sum_probs=177.1
Q ss_pred HHHHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHH---HHHCCcEEEEEc
Q 001989 632 EMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPAT---AAMCGMKIVSVG 708 (985)
Q Consensus 632 ~~~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~---a~~~G~~vv~v~ 708 (985)
+...++++.+++++|. ...+++.||++++..++ +.+. .++..||+...+|-..... ....++....+.
T Consensus 35 ~~~~~~e~~~ae~~g~-~a~~Fv~sGT~aN~lal---~~~~-----~~~~~vi~~~~aHi~~~E~Ga~~~~~~~~~~~~~ 105 (342)
T COG2008 35 PTTNALEQRIAELFGK-EAALFVPSGTQANQLAL---AAHC-----QPGESVICHETAHIYTDECGAPEFFGGGQKLPIV 105 (342)
T ss_pred HHHHHHHHHHHHHhCC-ceEEEecCccHHHHHHH---HHhc-----CCCCeEEEeccccceecccCcHHHHcCCceeccC
Confidence 4466889999999999 44566678888774444 3332 3677899988888544332 233444444444
Q ss_pred CCCCCCCCHHHHHHHHHh----cCCCEEEEEEEcCCCccccc--cCHHHHHHHHHHcCCEEEEEcccc-ccccCCCCC--
Q 001989 709 TDAKGNINIEELRKAAEA----NRDNLSTLMVTYPSTHGVYE--EGIDEICKIIHDNGGQVYMDGANM-NAQVGLTSP-- 779 (985)
Q Consensus 709 ~d~~g~iD~e~L~~~i~~----~~~~t~~Vvv~~pn~~G~i~--~di~eI~~la~~~galliVD~a~~-~~~~~l~~p-- 779 (985)
..++|.+++|++++.|.. +.+...+++.+.++..|.+. +.|++|+++||++|+.||+|||-. ++...+..+
T Consensus 106 ~g~~Gklt~e~v~~~i~~~d~~~~~~~~~~~e~~~te~GtVy~l~el~~i~~~~k~~~l~LHmDGAR~~nA~valg~~~~ 185 (342)
T COG2008 106 PGADGKLTPEDVEAAIRPDDIHHAPTPLAVLENTATEGGTVYPLDELEAISAVCKEHGLPLHMDGARLANALVALGVALK 185 (342)
T ss_pred CCCCCCcCHHHHHHhhcCCCcccCCCceEEEeeccCCCceecCHHHHHHHHHHHHHhCCceeechHHHHHHHHHcCCCHH
Confidence 457899999999998863 11233455555566778885 257888999999999999999863 222222211
Q ss_pred -CccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHH
Q 001989 780 -GYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYT 858 (985)
Q Consensus 780 -g~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a 858 (985)
-..++|++++++.|.+ |.|+..+++.+.++.+....+ ++..+ +.+. +...++++|.
T Consensus 186 ~~~~~~D~v~~~~tK~g------~~~~gAiv~gn~~~~~~a~~~-----------rK~~G-gl~~-----k~r~laA~~~ 242 (342)
T COG2008 186 TIKSYVDSVSFCLTKGG------GAPVGAIVFGNRDFAKRARRW-----------RKRAG-GLMR-----KARFLAAQGL 242 (342)
T ss_pred HHHhhCCEEEEecccCC------cceeeeEEEcCHHHHHHHHHH-----------HHHhc-ccHh-----hhhHHHHHHH
Confidence 2347999999999965 456667777777666544211 01111 1111 2223333333
Q ss_pred HHHHhcHHHHHHHHHHHHHHHHHHHHHhhc--cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCC
Q 001989 859 YIAMMGSKGLTEASKIAILNANYMAKRLEK--HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPT 936 (985)
Q Consensus 859 ~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~--g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~ 936 (985)
+ ++.++-.+....+..+.|++|+++|.+ |+++..+ +..|.+.+.++ +...+.|...|+..-.
T Consensus 243 ~--~l~~~~~~~~~~Han~mA~~La~~~~~~~G~~~~~~----~~tN~vf~~l~----------~~~i~~l~~~~~~~~~ 306 (342)
T COG2008 243 Y--ALEDDVWRLAADHANAMAARLAEGLEAKPGVKLAFP----VETNMVFVRLP----------ESAIEALRLAGALFYR 306 (342)
T ss_pred H--HHhccHHHHHHHHHHHHHHHHHHhhhhcCCceeccC----CcccEEEEECC----------hHHHHHHHhhchhhee
Confidence 3 343443344444445558999999984 5665432 24556666654 1223666666665432
Q ss_pred --CCCCCCCEEEEeccCCCCHHHHHHHHccCChhHH
Q 001989 937 --MSWPVPGTLMIEPTESESKSWTGIVMLSSPSEKK 970 (985)
Q Consensus 937 --~~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~ 970 (985)
...+....+|+..+..+|+||||+ ++..+++.
T Consensus 307 ~~~~~~~~~~vRfvts~a~~~edv~~--~~~~~~~~ 340 (342)
T COG2008 307 GVLIGAHGEIVRFVTSWATSEEDVDE--LVAAIKAL 340 (342)
T ss_pred eeeccCCCceEEEEeeccCCHHHHHH--HHHHHHHh
Confidence 111111379999999999999999 55555543
|
|
| >PRK06149 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.8e-13 Score=174.38 Aligned_cols=324 Identities=18% Similarity=0.219 Sum_probs=197.0
Q ss_pred cccccccCCCccccccccccccccccCCCCchhhhhhHHHHHHHHHHHHHHHhC--CCccceecCcHHHHHHHHHHHHHH
Q 001989 593 PLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITG--FDSFSLQPNAGAAGEYAGLMVIRA 670 (985)
Q Consensus 593 ~lG~~t~~~~~~~~~~~~~~~~f~~~~p~~p~e~~~G~~~~~~e~~~~la~l~G--~~~~~~~~~sGa~a~~a~l~air~ 670 (985)
.+|++++.+..+...+.......+ .+. .+...++.+.|++++. .+ ..++++||++|++++++.+|.
T Consensus 596 ~lGh~hp~v~~Ai~~q~~~l~~~~---~~~--------~~~~~elae~L~~~~p~~~~-~v~f~~SGsEA~e~AlklAr~ 663 (972)
T PRK06149 596 VLGHGHPRLAAAAARQWSLLNTNS---RFH--------YAAVAEFSERLAALAPDGLD-TVFLVNSGSEANDLAIRLAWA 663 (972)
T ss_pred ccCCCCHHHHHHHHHHHHhccccc---ccc--------CHHHHHHHHHHHHhCCCCcC-EEEEeCCchHHHHHHHHHHHH
Confidence 588888877766544432111111 111 1234578889999883 33 356789999999999998887
Q ss_pred HHHhcCCCCCCEEEE-cCCCCcccHHHHHHCC-------c------EEEEEcCCCC----C-CCC-----HHHHHHHHH-
Q 001989 671 YHKARGDHHRNVCII-PVSAHGTNPATAAMCG-------M------KIVSVGTDAK----G-NIN-----IEELRKAAE- 725 (985)
Q Consensus 671 ~~~~~g~~~~~~IIv-~~~~Hg~~~~~a~~~G-------~------~vv~v~~d~~----g-~iD-----~e~L~~~i~- 725 (985)
|. ++.+||. ...+||....+....+ . .+..++.... + ..| .+++++.++
T Consensus 664 ~t------gr~~ii~~~~~yHG~t~ga~~~s~~~~~~~~~~~~~~~~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~l~~ 737 (972)
T PRK06149 664 AS------GRRDVVSVLEAYHGWTVATDAVSTSIADNPQALETRPDWVHPVESPNTYRGRFRGADSAADYVRDVVAQLEE 737 (972)
T ss_pred hc------CCCeEEEEeCCCCCcChhHhhhcCCccccccccCCCCCCeEEeCCCcccCCcCCCcccHHHHHHHHHHHHHH
Confidence 62 3445554 6689987644321110 0 1223332111 1 112 345555543
Q ss_pred --hcCCCEEEEEEEcC-CCccccccC----HHHHHHHHHHcCCEEEEEccccccccCCCCCCc-------c--CCcEEEe
Q 001989 726 --ANRDNLSTLMVTYP-STHGVYEEG----IDEICKIIHDNGGQVYMDGANMNAQVGLTSPGY-------I--GADVCHL 789 (985)
Q Consensus 726 --~~~~~t~~Vvv~~p-n~~G~i~~d----i~eI~~la~~~galliVD~a~~~~~~~l~~pg~-------~--g~Di~~~ 789 (985)
+..+++++|+++-. ...|.+. + +++|.++|+++|+++|+|++| .|+++.|. + .+|++++
T Consensus 738 ~~~~~~~iAavI~Epv~g~gG~i~-~p~~yL~~l~~lc~~~g~llI~DEV~----tGfGRtG~~~~a~e~~gv~PDivt~ 812 (972)
T PRK06149 738 LDASGRGLAGFICEPVYGNAGGIA-LPPGYLQQVYAAVRARGGVCIADEVQ----VGYGRLGHYFWGFEQQGVVPDIITM 812 (972)
T ss_pred HhhcCCceEEEEEcccccCCCccc-CCHHHHHHHHHHHHHcCCEEEEEeeh----hcCCccCccchhhhhcCCCCCEEEe
Confidence 23357888887642 3457665 5 999999999999999999887 33444443 1 3799866
Q ss_pred CCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHHHH
Q 001989 790 NLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLT 869 (985)
Q Consensus 790 s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl~ 869 (985)
+ |.+ |+|-| +|.+++++++.+.+... + .+.+++.|++..++++.+.|..+.++++.
T Consensus 813 g--K~l----g~G~P-l~av~~~~~i~~~~~~~--~---------------~~~sT~~gnP~~~aaala~L~~i~~e~l~ 868 (972)
T PRK06149 813 A--KGM----GNGHP-LGAVITRREIAEALEAE--G---------------YFFSSTGGSPVSCRIGMAVLDVLREEKLQ 868 (972)
T ss_pred c--ccc----cCCee-eEEEEEcHHHHhhhccC--C---------------cccCCCCCCHHHHHHHHHHHHHHHhcCHH
Confidence 3 766 43434 57777788776655321 0 00122356778888888999988776554
Q ss_pred HHHHHHHHHHHHHHHHhhcc---CCee--ecCCCCceeeEEEEEecC-c--cccCCCCHHHHHHHHHHCCCccCCCCCCC
Q 001989 870 EASKIAILNANYMAKRLEKH---YPIL--FRGVNGTVAHEFIVDLRG-L--KNTAGIEPEDVAKRLMDYGFHGPTMSWPV 941 (985)
Q Consensus 870 ~~~~~~~~~a~~l~~~L~~g---~~l~--~~~~~~~~~~~~iv~~~~-~--~~~~g~~~~~v~~~L~~~Gi~~~~~~~p~ 941 (985)
++..+..++|+++|++. ..++ +.|. + .+. -+.+.. . +.........+.++|.++|+++.... +.
T Consensus 869 ---~~~~~~G~~l~~~L~~l~~~~~~i~~vrG~-G-l~~--gvel~~~~~~~~~~~~~~~~i~~~l~~~Gvl~~~~g-~~ 940 (972)
T PRK06149 869 ---ENARRVGDHLKARLEALADRHPLIGAVHGM-G-LYL--GVELVRDRQTLEPATEETAAICDRLLELGVIMQPTG-DH 940 (972)
T ss_pred ---HHHHHHHHHHHHHHHHHHHhCCCeEEEeec-c-eEE--EEEEecCcccCCCChHHHHHHHHHHHhCCeEEeecC-CC
Confidence 45667778888888752 3322 1221 2 121 222210 0 00000114578889999999986432 12
Q ss_pred CCEEEEeccCCCCHHHHHHHHccCChhHHHHh
Q 001989 942 PGTLMIEPTESESKSWTGIVMLSSPSEKKLHR 973 (985)
Q Consensus 942 ~~~lris~t~~~t~eeId~~~~~~~l~~~~~~ 973 (985)
.+.|||.|+..+|++|||. ++++|++++.+
T Consensus 941 ~~vl~~~Ppl~it~~~id~--~~~~l~~~l~~ 970 (972)
T PRK06149 941 LNILKIKPPLCLDRESADF--FVDMLDRVLTE 970 (972)
T ss_pred CCEEEEECCCcCCHHHHHH--HHHHHHHHHHh
Confidence 3789999999999999999 88889888753
|
|
| >PRK05967 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.3e-13 Score=157.96 Aligned_cols=211 Identities=17% Similarity=0.107 Sum_probs=149.7
Q ss_pred HHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHH----HHHHCCcEEEEEcC
Q 001989 634 FNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPA----TAAMCGMKIVSVGT 709 (985)
Q Consensus 634 ~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~----~a~~~G~~vv~v~~ 709 (985)
.+.+++.++.+-|.+.. +.+.||..|+.++++++. ++||+||+++..++.+.. .++..|+++..++.
T Consensus 66 ~~~Le~~la~le~~~~~-v~~sSG~aAi~~~l~all--------~~GD~Vlv~~~~Y~~~~~l~~~~l~~~Gi~v~~vd~ 136 (395)
T PRK05967 66 TDALCKAIDALEGSAGT-ILVPSGLAAVTVPFLGFL--------SPGDHALIVDSVYYPTRHFCDTMLKRLGVEVEYYDP 136 (395)
T ss_pred HHHHHHHHHHHhCCCCE-EEECcHHHHHHHHHHHhc--------CCCCEEEEccCCcHHHHHHHHHHHHhcCeEEEEeCC
Confidence 45688899988876554 555668777755554432 478999999887766543 24678999999875
Q ss_pred CCCCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCccCCcEEE
Q 001989 710 DAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIGADVCH 788 (985)
Q Consensus 710 d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~g~Di~~ 788 (985)
+ +.++++++++ ++|++|++++| |+++.+. ||++|+++||++|++++||.++. ...+.+|.++|+|+++
T Consensus 137 ~-----~~e~l~~al~---~~TklV~lesPsNP~l~v~-dl~~I~~la~~~g~~vvVD~t~a--~p~~~~pl~~GaDivv 205 (395)
T PRK05967 137 E-----IGAGIAKLMR---PNTKVVHTEAPGSNTFEMQ-DIPAIAEAAHRHGAIVMMDNTWA--TPLYFRPLDFGVDISI 205 (395)
T ss_pred C-----CHHHHHHhcC---cCceEEEEECCCCCCCcHH-HHHHHHHHHHHhCCEEEEECCcc--CceecChhHcCCCEEE
Confidence 3 5688999997 88999999998 5688887 89999999999999999999874 2334688999999999
Q ss_pred eCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHHH
Q 001989 789 LNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGL 868 (985)
Q Consensus 789 ~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl 868 (985)
.|..|+++ |-|.--+|+++.++++++.+... . ..++...+ + ..|| +...|.+.+
T Consensus 206 ~S~tKy~~---Gh~d~~~G~v~~~~~~~~~l~~~-~------------~~~G~~~~-----p---~da~--l~~rgl~Tl 259 (395)
T PRK05967 206 HAATKYPS---GHSDILLGTVSANEKCWPQLLEA-H------------GTLGLCAG-----P---DDTY--QILRGLRTM 259 (395)
T ss_pred EecccccC---CCCCeeEEEEEcCHHHHHHHHHH-H------------HHcCCCCC-----H---HHHH--HHHcCcccH
Confidence 99999974 11222467776665543322100 0 01122111 1 1234 445566677
Q ss_pred HHHHHHHHHHHHHHHHHhhccC
Q 001989 869 TEASKIAILNANYMAKRLEKHY 890 (985)
Q Consensus 869 ~~~~~~~~~~a~~l~~~L~~g~ 890 (985)
.-+++++.+++..+++.|++..
T Consensus 260 ~lR~~~~~~na~~lA~~L~~hp 281 (395)
T PRK05967 260 GIRLEHHRKSALEIARWLEGRP 281 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHhCC
Confidence 8888999999999999998743
|
|
| >TIGR03251 LAT_fam L-lysine 6-transaminase | Back alignment and domain information |
|---|
Probab=99.59 E-value=8e-14 Score=163.01 Aligned_cols=340 Identities=12% Similarity=0.130 Sum_probs=196.2
Q ss_pred HHHHHHHHHhccccCcccccccccccccCCC--ccccccccccc--cccccCCCCchhhhhhHHHHHHHHHHHHHHHhCC
Q 001989 572 ELLRYIHLLQSKELSLCHSMIPLGSCTMKLN--ATTEMMPVTWP--SFANIHPFAPADQAQGYQEMFNNLGEWLCTITGF 647 (985)
Q Consensus 572 e~~~~l~~l~~~~~~~~~~~~~lG~~t~~~~--~~~~~~~~~~~--~f~~~~p~~p~e~~~G~~~~~~e~~~~la~l~G~ 647 (985)
+..+|++..++-. ...||++++.+. .+...+..... .+.+.+... ....++.+.++++++.
T Consensus 36 dG~~ylD~~~g~~------~~~lGh~~p~v~~~~ai~~q~~~~~~~~~~~~~~~~---------~~~~~l~~~l~~~~~~ 100 (431)
T TIGR03251 36 DGRRYLDMFSFFA------SMALGMNHPALVDDLAFRARLGAAAVNKPSNSDVYT---------VAMARFVDTFARVLGD 100 (431)
T ss_pred CCCChhhcccChh------hcCCCCCChhhhHHHHHHHHHHHhhhcccccCCCCC---------HHHHHHHHHHHHhcCC
Confidence 5667888766543 446899988887 44433332111 111111111 1233556667776521
Q ss_pred C--ccceecCcHHHHHHHHHHHHHHHHH----hcCCC--CCCEEEE-cCCCCcccHHHHHHCCcE-E----------EEE
Q 001989 648 D--SFSLQPNAGAAGEYAGLMVIRAYHK----ARGDH--HRNVCII-PVSAHGTNPATAAMCGMK-I----------VSV 707 (985)
Q Consensus 648 ~--~~~~~~~sGa~a~~a~l~air~~~~----~~g~~--~~~~IIv-~~~~Hg~~~~~a~~~G~~-v----------v~v 707 (985)
+ ...++.+||++|++++++.+|.|.. .+|.. ++.+||. ...+||....+....|-. . ..+
T Consensus 101 ~~~~~v~f~~sGsEAve~AlklAr~~t~~~~~~~g~~~~~~~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~ 180 (431)
T TIGR03251 101 PALPHLFFIEGGALAVENALKTAFDWKSRHNQARGIPAALGTQVLHLRQAFHGRSGYTLSLTNTDPRKTARFPKFDWPRI 180 (431)
T ss_pred CCcCEEEEeCCcHHHHHHHHHHHHHHhhcchhhcCCCCCCCceEEEECCccCCcchhhhhccCCccccccCCCCCCCccC
Confidence 1 2347789999999999999998741 12321 1456765 668999876654432211 0 001
Q ss_pred c-------CCCCC--------CCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccc---cCHHHHHHHHHHcCCEEEEEcc
Q 001989 708 G-------TDAKG--------NINIEELRKAAEANRDNLSTLMVTYP-STHGVYE---EGIDEICKIIHDNGGQVYMDGA 768 (985)
Q Consensus 708 ~-------~d~~g--------~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~---~di~eI~~la~~~galliVD~a 768 (985)
+ .+.+. ..+++++++.+.++.+++++|+++-. ...|++. ..+++|.++|+++|+++++|++
T Consensus 181 ~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iAavivEPv~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV 260 (431)
T TIGR03251 181 DNPKLTFPLDAPNLDQVIALEEEALRQARAAFAERPHDIACFIAEPIQGEGGDNHFRPEFLRAMRALCDEHDALLIFDEV 260 (431)
T ss_pred CCCcccCCccccccchhhHHHHHHHHHHHHHHHhCCCcEEEEEEeccccCCCCcCCCHHHHHHHHHHHHHcCCEEEEecc
Confidence 1 10000 02355667777655678999999753 3456653 2589999999999999999998
Q ss_pred ccccccCCCCCCc--------cCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCC
Q 001989 769 NMNAQVGLTSPGY--------IGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLG 840 (985)
Q Consensus 769 ~~~~~~~l~~pg~--------~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~ 840 (985)
+. |+.+.|. ..+|+++++ |.+ |.+|++..+ ++..... ..+.+ .+
T Consensus 261 ~t----G~GrtG~~~a~~~~gv~PDi~~~g--K~~--------~~~g~~~~~-~i~~~~~-~~~~~------------~~ 312 (431)
T TIGR03251 261 QT----GVGLTGTAWAYQQLGVQPDIVAFG--KKT--------QVCGIMAGR-RVDEVAD-NVFAV------------PS 312 (431)
T ss_pred hh----ccCccchHHHHHhcCCCCCEEEec--ccC--------ccceEEecc-hHHHhhh-hcccC------------cc
Confidence 74 3344432 247998764 654 345666543 2211110 00000 00
Q ss_pred CCCCcchhhhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhcc---CC-eeecCCCCceeeEEEEEecCccccC
Q 001989 841 TIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKH---YP-ILFRGVNGTVAHEFIVDLRGLKNTA 916 (985)
Q Consensus 841 ~i~s~~~g~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~g---~~-l~~~~~~~~~~~~~iv~~~~~~~~~ 916 (985)
...+++.|+++.++++.+.|..+..+++.+ +..++.+++.++|++. +. +.........+ +.+.++.
T Consensus 313 ~~~~T~~gnpl~~aaa~a~L~~l~~~~l~~---~~~~~g~~l~~~L~~l~~~~~~~i~~vrg~G~~--~~i~~~~----- 382 (431)
T TIGR03251 313 RLNSTWGGNLVDMVRATRILEIIEEERLVD---NARVQGAHLLARLHELAAEFPHLVSNPRGRGLM--CAFDLPS----- 382 (431)
T ss_pred ccCCCCCCCHHHHHHHHHHHHHHHhcCHHH---HHHHHHHHHHHHHHHHHHhCccceeccccccee--EEEEeCC-----
Confidence 112334567777888888888887666543 4556667777776541 22 32111101111 2334431
Q ss_pred CCCHHHHHHHHHHCCCccCCCCCCCCCEEEEeccCCCCHHHHHHHHccCChhH
Q 001989 917 GIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKSWTGIVMLSSPSEK 969 (985)
Q Consensus 917 g~~~~~v~~~L~~~Gi~~~~~~~p~~~~lris~t~~~t~eeId~~~~~~~l~~ 969 (985)
......+.+.|.++|+++.... .+.+|++|+..+|++|||+ ++++|++
T Consensus 383 ~~~~~~~~~~l~~~Gvl~~~~g---~~~lr~~P~l~~t~~eid~--~l~~l~~ 430 (431)
T TIGR03251 383 TADRDEVIRQLYREGVLLLGCG---ERSIRFRPPLTVTREEIDA--AIDAIRR 430 (431)
T ss_pred HHHHHHHHHHHHhCCeEEecCC---CCeEEEECCccCCHHHHHH--HHHHHHh
Confidence 1124578899999999974322 2689999999999999999 6666654
|
Characterized members of this protein family are L-lysine 6-transaminase, also called lysine epsilon-aminotransferase (LAT). The immediate product of the reaction of this enzyme on lysine, 2-aminoadipate 6-semialdehyde, becomes 1-piperideine 6-carboxylate, or P6C. This product may be converted subsequently to pipecolate or alpha-aminoadipate, lysine catabolites that may be precursors of certain seconary metabolites. |
| >PRK02731 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.59 E-value=5.6e-13 Score=153.19 Aligned_cols=265 Identities=15% Similarity=0.094 Sum_probs=176.7
Q ss_pred HHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc-----
Q 001989 214 LNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL----- 288 (985)
Q Consensus 214 ~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~----- 288 (985)
.++++.+|+++|.++.++.+++|++.++..+..++ . ++||+|++++-.|+.+...++ ..|++++.++.
T Consensus 70 ~~lr~~ia~~~~~~~~~i~~t~G~~~~l~~~~~~l-~--~~gd~vl~~~p~y~~~~~~~~----~~g~~~~~~~~~~~~~ 142 (367)
T PRK02731 70 FELKAALAEKFGVDPERIILGNGSDEILELLARAY-L--GPGDEVIYSEHGFAVYPIAAQ----AVGAKPVEVPAKDYGH 142 (367)
T ss_pred HHHHHHHHHHhCcCHHHEEEcCCHHHHHHHHHHHh-c--CCCCEEEEecCCHHHHHHHHH----HcCCeEEEecccCCCC
Confidence 46888999999998888989998887665554443 2 378999999988876655443 46888887754
Q ss_pred --hhhhc-cCCCEeEEEEEcC-CCCeeeccHHHHHHHHHhC--CcEEEEEecCccccCCCC---C----Ccccce-EEEe
Q 001989 289 --KDIDY-KSGDVCGVLVQYP-GTEGEVLDYGDFIKNAHAN--GVKVVMATDLLALTILKP---P----GELGAD-IVVG 354 (985)
Q Consensus 289 --~~l~~-l~~~t~~V~v~~p-n~~G~v~di~~I~~~a~~~--galliV~a~~~~lg~l~~---~----~~~GaD-i~v~ 354 (985)
+++++ +++++++|++.+| |.+|.+.|.+++.++++.+ |+++++|. ......... + .+.+-+ |+++
T Consensus 143 ~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~li~De-~y~~~~~~~~~~~~~~~~~~~~~~i~~~ 221 (367)
T PRK02731 143 DLDAMLAAVTPRTRLVFIANPNNPTGTYLPAEEVERFLAGVPPDVLVVLDE-AYAEYVRRKDYEDGLELVAKFPNVVVTR 221 (367)
T ss_pred CHHHHHHHhCCCCcEEEEeCCCCCCCcCCCHHHHHHHHHhCCCCcEEEEEC-cHHHhccCcCcccHHHHHhhcCCEEEEe
Confidence 34555 6778999999998 7899999999999999875 88988843 222111100 0 011223 4555
Q ss_pred cC-ccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHH
Q 001989 355 SA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAM 433 (985)
Q Consensus 355 s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~ 433 (985)
|. |.|+. +|..+|++++++++++.+.. .+.+.++++ . +..++.
T Consensus 222 S~SK~~g~----~G~RiG~l~~~~~~~~~l~~----------------------------~~~~~~~~~-~---~~~~a~ 265 (367)
T PRK02731 222 TFSKAYGL----AGLRVGYGIAPPEIIDALNR----------------------------VRQPFNVNS-L---ALAAAV 265 (367)
T ss_pred eehHhhcC----cccceeeeeCCHHHHHHHHH----------------------------ccCCCCCCH-H---HHHHHH
Confidence 65 76643 34456999998887765510 000111211 1 112222
Q ss_pred HHHHhC-cchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCCCcceEEEecCC---HHHHHHHHHHcCceeeeec----CC
Q 001989 434 YAVYHG-PEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDTVKVKCAD---AHAIASAAYKIEMNLRVVD----SN 505 (985)
Q Consensus 434 ~l~~~g-~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~---~~~v~~~L~~~GI~~~~~~----~~ 505 (985)
.++. .+.++++.++..++.+++.+.|++.| +++.. +...-+.++.+. +.++.++|.++||.+.... ++
T Consensus 266 --~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~-~~g~~~~i~~~~~~~~~~~~~~L~~~gI~v~~~~~~~~~~ 341 (367)
T PRK02731 266 --AALDDDAFVEKSRALNAEGMAWLTEFLAELG-LEYIP-SVGNFILVDFDDGKDAAEAYQALLKRGVIVRPVAGYGLPN 341 (367)
T ss_pred --HHhCCHHHHHHHHHHHHHHHHHHHHHHHHCC-CccCC-CCceEEEEECCCCCCHHHHHHHHHHCCEEEEeCCCCCCCC
Confidence 2222 23357777788888899999999886 76652 222234455532 7899999999999886532 46
Q ss_pred eEEEEeccCCCHHHHHHHHHHHhC
Q 001989 506 TVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 506 ~lris~t~~~t~edId~li~aL~~ 529 (985)
.+|++++ +.+|+++++++|++
T Consensus 342 ~iRis~~---~~~e~~~l~~aL~~ 362 (367)
T PRK02731 342 ALRITIG---TEEENRRFLAALKE 362 (367)
T ss_pred eEEEecC---CHHHHHHHHHHHHH
Confidence 8999986 78999999999974
|
|
| >PRK09265 aminotransferase AlaT; Validated | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.4e-13 Score=158.31 Aligned_cols=296 Identities=13% Similarity=0.049 Sum_probs=171.9
Q ss_pred HHHHHHHHHh------CCCccceecCcHHH-HHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEc
Q 001989 636 NLGEWLCTIT------GFDSFSLQPNAGAA-GEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVG 708 (985)
Q Consensus 636 e~~~~la~l~------G~~~~~~~~~sGa~-a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~ 708 (985)
++++.+++.+ +.+...+..++|++ +. ..+++.+. .++|+|+++++.|+.+...++..|.+++.++
T Consensus 76 ~lr~~ia~~~~~~~~~~~~~~~i~~t~G~~~~l---~~~~~~~~-----~~gd~Vlv~~p~y~~~~~~~~~~g~~~v~~~ 147 (404)
T PRK09265 76 SARKAIMQYYQQKGIPDVDVDDIYIGNGVSELI---VMAMQALL-----NNGDEVLVPAPDYPLWTAAVSLSGGKPVHYL 147 (404)
T ss_pred HHHHHHHHHHhccCCCCCCcccEEEeCChHHHH---HHHHHHhC-----CCCCEEEEeCCCCcChHHHHHHcCCEEEEEe
Confidence 4555556555 45555555555554 33 23333331 4688999999988887777888899998888
Q ss_pred CCC--CCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccC---HHHHHHHHHHcCCEEEEEccccccc-cC--CCCC
Q 001989 709 TDA--KGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEG---IDEICKIIHDNGGQVYMDGANMNAQ-VG--LTSP 779 (985)
Q Consensus 709 ~d~--~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~d---i~eI~~la~~~galliVD~a~~~~~-~~--l~~p 779 (985)
++. ++.+|+++++++++ +++++|++++| |++|.+. + +++|.++|+++|+++++|+++..-. .+ ....
T Consensus 148 ~~~~~~~~~d~~~l~~~~~---~~~~~v~l~~P~NPtG~~~-~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~ 223 (404)
T PRK09265 148 CDEEAGWFPDLDDIRSKIT---PRTKAIVIINPNNPTGAVY-SKELLEEIVEIARQHNLIIFADEIYDKILYDGAVHISI 223 (404)
T ss_pred cccccCCCCCHHHHHHhcc---ccceEEEEECCCCCCCcCC-CHHHHHHHHHHHHHCCCEEEEehhhhhccCCCCCcCCH
Confidence 754 36799999999987 78999999999 4799887 5 8999999999999999999873211 01 0011
Q ss_pred Ccc--CCc-EEEeCCcccccccCCCCCCceEEEEEc--ccc----cCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhh
Q 001989 780 GYI--GAD-VCHLNLHKTFCIPHGGGGPGMGPIGVK--KHL----APFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSA 850 (985)
Q Consensus 780 g~~--g~D-i~~~s~hK~l~~p~g~GGPg~G~i~~~--~~l----~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~ 850 (985)
..+ ... +++.|+.|+|++| |.++|++++. +.+ .+.+. ... ....+.+ ..++.
T Consensus 224 ~~~~~~~~vi~~~S~SK~~~~p----GlRiG~~v~~~~~~~~~~~~~~~~--~~~-----------~~~~~~~--~~~q~ 284 (404)
T PRK09265 224 ASLAPDLLCVTFNGLSKAYRVA----GFRVGWMVLSGPKKHAKGYIEGLD--MLA-----------SMRLCAN--VPAQH 284 (404)
T ss_pred HHcCCCceEEEEecchhhccCc----ccceEEEEEeCchHHHHHHHHHHH--HHh-----------ccccCCC--cHHHH
Confidence 111 112 3456778888544 6789999963 221 11110 000 0001111 11121
Q ss_pred HHHHHHHHHHHHhcHHHHHHH---HHHHHHHHHHHHHHhhccCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHH
Q 001989 851 LILPISYTYIAMMGSKGLTEA---SKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRL 927 (985)
Q Consensus 851 ~~~~~a~a~l~~lg~eGl~~~---~~~~~~~a~~l~~~L~~g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L 927 (985)
++.++|. ..+.+.+. .++..++++++.+.|++...+.+..+.+..+ +.++++........+.+.+.+.|
T Consensus 285 ----~~~~~l~--~~~~~~~~~~~~~~~~~~r~~~~~~L~~~~~~~~~~p~~g~~--l~~~~~~~~~~~~~~~~~~~~~l 356 (404)
T PRK09265 285 ----AIQTALG--GYQSINELILPGGRLYEQRDRAWELLNAIPGVSCVKPKGALY--AFPKLDPKVYPIHDDEQFVLDLL 356 (404)
T ss_pred ----HHHHHhc--CchhHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccCCCcceE--EEEEecccccCCCCHHHHHHHHH
Confidence 1112221 11112222 2345566777888887521222222223222 33454310000001234566778
Q ss_pred HHCCCccCC-CCCC--CCCEEEEeccCCCCHHHHHHHHccCChhHHHHhh
Q 001989 928 MDYGFHGPT-MSWP--VPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRL 974 (985)
Q Consensus 928 ~~~Gi~~~~-~~~p--~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~ 974 (985)
.++|+.+.. ..|+ .++++|+++. .+.|++++ .++.|++.+++.
T Consensus 357 ~~~gv~v~pg~~F~~~~~~~~Ri~~~--~~~e~l~~--~l~rl~~~l~~~ 402 (404)
T PRK09265 357 LQEKVLLVQGTGFNWPEPDHFRIVTL--PRVDDLEE--AIGRIGRFLSGY 402 (404)
T ss_pred HhCCEEEECchhhCCCCCCeEEEEeC--CCHHHHHH--HHHHHHHHHHHh
Confidence 889998643 2232 3579999994 67899999 778888777643
|
|
| >PRK04311 selenocysteine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.4e-13 Score=160.64 Aligned_cols=290 Identities=21% Similarity=0.230 Sum_probs=174.9
Q ss_pred HHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCc----c--cHHHHHHCCcEEEEE
Q 001989 634 FNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHG----T--NPATAAMCGMKIVSV 707 (985)
Q Consensus 634 ~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg----~--~~~~a~~~G~~vv~v 707 (985)
..++++.+++++|.+.+ +.+++|+.|+..++ ..+ .++++||+++..|. + .+...+..|++++++
T Consensus 129 ~~~~e~~lA~l~Gae~a-~vv~sgtaAl~l~l---~~l------~~GdeVIvs~~e~~~~ggs~~i~~~~~~~G~~l~~v 198 (464)
T PRK04311 129 DRALAALLCALTGAEDA-LVVNNNAAAVLLAL---NAL------AAGKEVIVSRGELVEIGGAFRIPDVMRQAGARLVEV 198 (464)
T ss_pred HHHHHHHHHHHhCCCeE-EEECCHHHHHHHHH---HHh------CCCCEEEEcchhhhhcCcchhhHHHHHHCCcEEEEE
Confidence 55788999999999864 45667777664333 221 36789999875443 2 234456789999999
Q ss_pred cCCCCCCCCHHHHHHHHHhcCCCEEEEEEEcCC-C--cccc-ccCHHHHHHHHHHcCCEEEEEccccc-------cccC-
Q 001989 708 GTDAKGNINIEELRKAAEANRDNLSTLMVTYPS-T--HGVY-EEGIDEICKIIHDNGGQVYMDGANMN-------AQVG- 775 (985)
Q Consensus 708 ~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~pn-~--~G~i-~~di~eI~~la~~~galliVD~a~~~-------~~~~- 775 (985)
+.+ +..++++++++|+ ++|++|++++++ + +|.. ..|+++|+++||++|+++++|+++.. ++..
T Consensus 199 ~~~--~~t~~~dle~aI~---~~TklV~~vh~sN~~i~G~~~~~dl~eI~~lak~~gi~vivD~gsG~l~~~~~~gl~~~ 273 (464)
T PRK04311 199 GTT--NRTHLRDYEQAIN---ENTALLLKVHTSNYRIEGFTKEVSLAELAALGKEHGLPVVYDLGSGSLVDLSQYGLPDE 273 (464)
T ss_pred CCC--CCCCHHHHHHhcC---ccCeEEEEEcCCCccccccCCcCCHHHHHHHHHHcCCeEEEECCCcccccchhccCCCC
Confidence 863 3468999999998 889999999874 3 4532 13899999999999999999985310 0000
Q ss_pred --CCCCCccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHH
Q 001989 776 --LTSPGYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALIL 853 (985)
Q Consensus 776 --l~~pg~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~ 853 (985)
+..+.++|+|++++|+||+| |||.+|++++++++.+.+.....+.. . .+. +..+.+
T Consensus 274 p~~~~~l~~GaDiv~fSg~K~L------gGp~~G~i~g~~~li~~l~~~~~~r~-----------l-r~d----k~~l~~ 331 (464)
T PRK04311 274 PTVQELLAAGVDLVTFSGDKLL------GGPQAGIIVGKKELIARLKKHPLKRA-----------L-RVD----KLTLAA 331 (464)
T ss_pred CchhhHHhcCCcEEEecCcccc------cCCceEEEEEcHHHHHHHhhchhHHH-----------H-hcc----hHHHHH
Confidence 11234589999999999998 67889999999887765543211100 0 000 001111
Q ss_pred HHHH--HHHH----HhcHHH---HHHHHHHHHHHHHHHHHHhhccC------Ceeec----C--C-CCceeeEEEEEecC
Q 001989 854 PISY--TYIA----MMGSKG---LTEASKIAILNANYMAKRLEKHY------PILFR----G--V-NGTVAHEFIVDLRG 911 (985)
Q Consensus 854 ~~a~--a~l~----~lg~eG---l~~~~~~~~~~a~~l~~~L~~g~------~l~~~----~--~-~~~~~~~~iv~~~~ 911 (985)
..++ .|+. ..+-.+ +....++..+++..+.+.|++.. .+... | . .+.....+.+.++.
T Consensus 332 l~~~l~~~~~~~~~~~~i~~l~~l~~~~~~~~~~A~~la~~L~~~~~~~~~~~~~~~~~~~gggs~p~~~~~~~~v~~~~ 411 (464)
T PRK04311 332 LEATLRLYLDPEKLAEEIPTLRLLTRSPEELRARAERLAAALKAALGAAFAVEVVPSFSQVGGGSLPVDRLPSAAVTLTP 411 (464)
T ss_pred HHHHHHHHhChhhhhhhCcHHHHhcCCHHHHHHHHHHHHHHHHhccCCCeeEEEEEccCccCCCCCcCCCCCeEEEEEeC
Confidence 1111 1110 011111 22223556778888888887521 22211 0 0 01122344555542
Q ss_pred ccccCCCCHHHHHHHHHHCC--CccCCCCCCCCCEEEEeccCCCCHHHHHHHHccCChhHHH
Q 001989 912 LKNTAGIEPEDVAKRLMDYG--FHGPTMSWPVPGTLMIEPTESESKSWTGIVMLSSPSEKKL 971 (985)
Q Consensus 912 ~~~~~g~~~~~v~~~L~~~G--i~~~~~~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~~ 971 (985)
.+.+..++.++|++.. |++. +. .+.+.+-+- ...++|++. +++.|++++
T Consensus 412 ----~~~~~~~l~~~lr~~~~~i~~r-~~---~~~~~ld~r-~~~~~~~~~--~~~~~~~~~ 462 (464)
T PRK04311 412 ----KDRSLEALAARLRLLPPPVIGR-IE---DGRLLLDLR-TLEEEDEER--LAAALLEAL 462 (464)
T ss_pred ----CCCCHHHHHHHHhcCCCCEEEE-EE---CCEEEEEeC-cCCHHHHHH--HHHHHHHHh
Confidence 2567899999998743 3331 21 356666552 345677777 666666654
|
|
| >PRK06460 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=5.6e-13 Score=153.22 Aligned_cols=214 Identities=21% Similarity=0.222 Sum_probs=149.3
Q ss_pred HHHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCchh
Q 001989 211 ESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDLKD 290 (985)
Q Consensus 211 ~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~~~ 290 (985)
....++++.+|+++|.+. ...+.+|++++.+++.++ . ++||+||++...++.....+...++..|++++.++.++
T Consensus 45 p~~~~L~~~lA~l~g~~~--~v~~~sG~~ai~~~l~al-~--~~Gd~Vl~~~~~~~~ty~~~~~~~~~~G~~v~~~~~~~ 119 (376)
T PRK06460 45 PTVLELTKKIVELENAEM--GVAFSSGMGAISTTALAL-L--KPGNSVLVHRDMFGRSYRFFTDYLKNWGVNVDASNPGS 119 (376)
T ss_pred ccHHHHHHHHHHHhCCCc--EEEeCCHHHHHHHHHHHH-h--CCCCEEEEecCCcCcHHHHHHHHHHhhCcEEEEECCCC
Confidence 345568899999999876 345677777666665554 2 38999999988886555555555667899999887642
Q ss_pred ---hhc-cCCCEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCCCCCcccceEEEecC-ccccccCC
Q 001989 291 ---IDY-KSGDVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKPPGELGADIVVGSA-QRFGVPMG 364 (985)
Q Consensus 291 ---l~~-l~~~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~~~~~~GaDi~v~s~-k~lg~P~~ 364 (985)
+++ ++++|++|++.+| |++|.+.|+++|+++||++|++++|| +.++.+....+.++|+||++.|. |+|++
T Consensus 120 ~~~l~~~~~~~tklV~l~sp~NPtG~v~d~~~I~~la~~~g~~vivD-ea~~~~~~~~~l~~~~divv~S~sK~l~G--- 195 (376)
T PRK06460 120 DNIIEKAKSKRYDVVFVENITNPLLRVVDITELSKVCKENGSILIVD-ATFSTPINQKPLELGADIVVHSASKFLAG--- 195 (376)
T ss_pred HHHHHHhcCCCceEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEE-CCcCccccCChhhcCCCEEEeecceeccC---
Confidence 344 5778999999998 78999999999999999999999995 34444433344568999999998 87752
Q ss_pred CCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcchHH
Q 001989 365 YGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLK 444 (985)
Q Consensus 365 ~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~ 444 (985)
.|+.-+|+++.++++.+++. ..++.. +++. ++. ..|+...+.+-++
T Consensus 196 ~~~~~~G~~~~~~~l~~~l~-------------------------~~~~~~---g~~~-~~~-----~a~~~l~~~~~l~ 241 (376)
T PRK06460 196 HNDVIAGLAAGYGKLLNVID-------------------------QMRRTL---GTSL-DPH-----AAYLTLRGIKTLK 241 (376)
T ss_pred CCCceEEEEecCHHHHHHHH-------------------------HHHHhc---CCCC-CHH-----HHHHHHhchhhHH
Confidence 22233688888777665441 000111 1111 111 1233445556678
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCe
Q 001989 445 TIAQRVHGLAGTFALGLKKLGTV 467 (985)
Q Consensus 445 ~i~~~~~~~a~~l~~~L~~~g~~ 467 (985)
.+.+++.+++.++++.|++.+.+
T Consensus 242 ~r~~~~~~n~~~l~~~L~~~p~v 264 (376)
T PRK06460 242 IRMDVINRNAEQIAEFLEGHPKV 264 (376)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCc
Confidence 88889999999999999987434
|
|
| >PRK04781 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.6e-13 Score=155.74 Aligned_cols=283 Identities=13% Similarity=0.108 Sum_probs=175.8
Q ss_pred HHHHHHHHHHhCCCccceecCcHHH-HHHHHHHHHHHHHHhcCCCCC-CEEEEcCCCCcccHHHHHHCCcEEEEEcCCC-
Q 001989 635 NNLGEWLCTITGFDSFSLQPNAGAA-GEYAGLMVIRAYHKARGDHHR-NVCIIPVSAHGTNPATAAMCGMKIVSVGTDA- 711 (985)
Q Consensus 635 ~e~~~~la~l~G~~~~~~~~~sGa~-a~~a~l~air~~~~~~g~~~~-~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~d~- 711 (985)
.++++.+++++|.+..++..++|++ +. .++++.+. .++ ++|+++++.++.+...++..|++++.+|.+.
T Consensus 62 ~~lr~~ia~~~~~~~~~I~~t~G~~~~l---~~~~~~~~-----~~g~~~vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~ 133 (364)
T PRK04781 62 PGLRSALAALYGCAPEQLLIGRGSDEAI---DLLVRALC-----VPGRDAVLVTPPVFGMYAVCARLQNAPLVEVPLVDG 133 (364)
T ss_pred HHHHHHHHHHhCcChHHEEEeCCHHHHH---HHHHHHhc-----CCCCCeEEEcCCChHHHHHHHHHcCCEEEEEecCCC
Confidence 4678889999998876666665654 33 23333331 245 6899988766656666788999999999742
Q ss_pred -C-CCCCHHHHHHHHHhcCCCEEEEEEEcCC-CccccccCHHHHHHHHHH--cCCEEEEEccccccccCCCC----CCcc
Q 001989 712 -K-GNINIEELRKAAEANRDNLSTLMVTYPS-THGVYEEGIDEICKIIHD--NGGQVYMDGANMNAQVGLTS----PGYI 782 (985)
Q Consensus 712 -~-g~iD~e~L~~~i~~~~~~t~~Vvv~~pn-~~G~i~~di~eI~~la~~--~galliVD~a~~~~~~~l~~----pg~~ 782 (985)
+ ..+|++++.+++. .+++++|++++|| ++|.+. +.+++.++++. .++++++|+++.. +..-.. ....
T Consensus 134 ~~~~~~d~~~l~~~~~--~~~~~lv~l~~p~NPTG~~~-~~~~~~~l~~~~~~~~~iI~Deay~~-f~~~~~~~~~~~~~ 209 (364)
T PRK04781 134 ADGFHADVPAIVAAAL--ASNAKLVFLCSPSNPAGSAI-ALDQIERALQALQGKALVVVDEAYGE-FSDVPSAVGLLARY 209 (364)
T ss_pred ccCCCcCHHHHHHHHh--ccCCeEEEEcCCCCCCCCCc-CHHHHHHHHHhCCCCcEEEEeCcchh-hcCCcchHHHHhhC
Confidence 2 4689999866553 1688999999994 799998 78888887765 3789999998741 111000 1111
Q ss_pred CCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHH
Q 001989 783 GADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAM 862 (985)
Q Consensus 783 g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~ 862 (985)
.-=+++.|+.|+|++| |.++|++++++++.+.+.... ...++++ .++ .++..+|..
T Consensus 210 ~~vi~~~SfSK~~gl~----GlRvGy~v~~~~l~~~l~~~~--------------~~~~~~~--~~~----~~a~~~l~~ 265 (364)
T PRK04781 210 DNLAVLRTLSKAHALA----AARIGSLIANAELIAVLRRCQ--------------APYPVPT--PCA----ALAEQALSA 265 (364)
T ss_pred CCEEEEecChhhcccc----cceeeeeeCCHHHHHHHHhcc--------------CCCCCCH--HHH----HHHHHHHhc
Confidence 1125667788887554 789999999877765442110 0111211 111 112223321
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHHhhc--cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCC-C
Q 001989 863 MGSKGLTEASKIAILNANYMAKRLEK--HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMS-W 939 (985)
Q Consensus 863 lg~eGl~~~~~~~~~~a~~l~~~L~~--g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~-~ 939 (985)
-..+-+.+..++..++++++.+.|++ ++.... ++.+ .+ +.++++ +..++.+.|.++||.+.... +
T Consensus 266 ~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~-p~~g-~f--~~~~~~--------~~~~~~~~l~~~gI~v~~~~~~ 333 (364)
T PRK04781 266 PALAVTARRVAEVRAERERLHAALAQLPGVRRVY-PSQG-NF--LLVRFD--------DAEAAFQALLAAGVVVRDQRAA 333 (364)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhCCCCCeEC-CCCC-cE--EEEEcC--------CHHHHHHHHHHCCeEEeeCCCC
Confidence 11122334444566777888888876 222222 2222 22 345543 46788999999999875432 2
Q ss_pred -CCCCEEEEeccCCCCHHHHHHHHccCChhHH
Q 001989 940 -PVPGTLMIEPTESESKSWTGIVMLSSPSEKK 970 (985)
Q Consensus 940 -p~~~~lris~t~~~t~eeId~~~~~~~l~~~ 970 (985)
...+++||++ .+.+|.++ ++++|+++
T Consensus 334 ~~~~~~~Ris~---~~~~~~~~--l~~al~~~ 360 (364)
T PRK04781 334 PRLSDALRITL---GTPEQNDR--VLAALQRT 360 (364)
T ss_pred CCCCCeEEEeC---CCHHHHHH--HHHHHHHH
Confidence 2357999998 57999999 66666654
|
|
| >PRK08045 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.5e-13 Score=158.17 Aligned_cols=210 Identities=19% Similarity=0.201 Sum_probs=142.2
Q ss_pred HHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHH----HHHCCcEEEEEcC
Q 001989 634 FNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPAT----AAMCGMKIVSVGT 709 (985)
Q Consensus 634 ~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~----a~~~G~~vv~v~~ 709 (985)
.+++++.++++.|.+. .+..++|.+++..++.++. .++|+|++++..|+..... ....|+++..++.
T Consensus 54 ~~~L~~~lA~l~g~~~-~i~~~sg~~Ai~~~l~~l~--------~~GD~Vl~~~~~y~~~~~~~~~~~~~~gi~v~~vd~ 124 (386)
T PRK08045 54 RDVVQRALAELEGGAG-AVLTNTGMSAIHLVTTVFL--------KPGDLLVAPHDCYGGSYRLFDSLAKRGCYRVLFVDQ 124 (386)
T ss_pred HHHHHHHHHHHhCCCe-EEEECCHHHHHHHHHHHHc--------CCCCEEEEcCCCcHHHHHHHHHHHhhCCeEEEEeCC
Confidence 4578899999999654 4556677766644433321 4789999988877643322 2234567776652
Q ss_pred CCCCCCCHHHHHHHHHhcCCCEEEEEEEcCC-CccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCccCCcEEE
Q 001989 710 DAKGNINIEELRKAAEANRDNLSTLMVTYPS-THGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIGADVCH 788 (985)
Q Consensus 710 d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~pn-~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~g~Di~~ 788 (985)
.|+++++++++ ++|++|++++|+ ++|.+. |+++|.++||++|++++||+++..+ ....|-.+|+|+++
T Consensus 125 -----~d~e~l~~~l~---~~tklV~l~sP~NPtG~v~-di~~I~~ia~~~g~~vivDeay~~~--~~~~pl~~gaDivv 193 (386)
T PRK08045 125 -----GDEQALRAALA---EKPKLVLVESPSNPLLRVV-DIAKICHLAREAGAVSVVDNTFLSP--ALQNPLALGADLVL 193 (386)
T ss_pred -----CCHHHHHHhcc---cCCeEEEEECCCCCCCEec-CHHHHHHHHHHcCCEEEEECCCCcc--ccCCchhhCCCEEE
Confidence 58999999997 789999999995 799998 8999999999999999999997532 23466778999999
Q ss_pred eCCcccccccCCCCCCceEEEEEc-ccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHH
Q 001989 789 LNLHKTFCIPHGGGGPGMGPIGVK-KHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKG 867 (985)
Q Consensus 789 ~s~hK~l~~p~g~GGPg~G~i~~~-~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eG 867 (985)
.|+||+++.+ ++-.+|+++++ +++.+.+.. . + ..++ .+. ++ ..+|..++ |-+.
T Consensus 194 ~S~tK~l~G~---~d~~~G~vi~~~~~~~~~l~~-~-----------~-~~~g-~~~----~p---~~~~l~~r--gl~t 247 (386)
T PRK08045 194 HSCTKYLNGH---SDVVAGVVIAKDPDVVTELAW-W-----------A-NNIG-VTG----GA---FDSYLLLR--GLRT 247 (386)
T ss_pred eecceeccCC---CCceeEEEEeCcHHHHHHHHH-H-----------H-HhcC-CCC----CH---HHHHHHHh--hhcc
Confidence 9999998511 11126777664 444332210 0 0 0011 111 11 22344433 4445
Q ss_pred HHHHHHHHHHHHHHHHHHhhcc
Q 001989 868 LTEASKIAILNANYMAKRLEKH 889 (985)
Q Consensus 868 l~~~~~~~~~~a~~l~~~L~~g 889 (985)
+..++++..+++..+++.|++.
T Consensus 248 l~~R~~~~~~na~~la~~L~~~ 269 (386)
T PRK08045 248 LVPRMELAQRNAQAIVKYLQTQ 269 (386)
T ss_pred HHHHHHHHHHHHHHHHHHHHcC
Confidence 7778888999999999999874
|
|
| >PRK11658 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.2e-13 Score=157.10 Aligned_cols=288 Identities=15% Similarity=0.150 Sum_probs=186.6
Q ss_pred HHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc----
Q 001989 213 LLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL---- 288 (985)
Q Consensus 213 i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~---- 288 (985)
..++++.+|+++|.+. +..+.+||+++..++.++.. ++||+||++...|+++...+. ..|++++.+|.
T Consensus 35 ~~~le~~la~~~g~~~--~v~~~sgt~al~lal~al~~--~~Gd~Viv~~~~~~~~~~~~~----~~G~~~v~vd~~~~~ 106 (379)
T PRK11658 35 NQALEQAFCQLTGNQH--AIAVSSATAGMHITLMALGI--GPGDEVITPSLTWVSTLNMIV----LLGATPVMVDVDRDT 106 (379)
T ss_pred HHHHHHHHHHHhCCCe--EEEECCHHHHHHHHHHHcCC--CCCCEEEECCCcHHHHHHHHH----HcCCEEEEEecCCCc
Confidence 4568899999999874 66788999887777766533 389999999999999987764 35888888764
Q ss_pred -----hhhhc-cCCCEeEEEEEcCCCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCC---CCCcccceEEEecC-cc
Q 001989 289 -----KDIDY-KSGDVCGVLVQYPGTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILK---PPGELGADIVVGSA-QR 358 (985)
Q Consensus 289 -----~~l~~-l~~~t~~V~v~~pn~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~---~~~~~GaDi~v~s~-k~ 358 (985)
+++++ ++++|++|+..+ .+|...|+++|.++|+++|+++++|+ ..++|... ..+.+|.|+..++. |.
T Consensus 107 ~~~d~~~l~~~i~~~tkav~~~~--~~G~~~d~~~i~~~a~~~gi~vi~D~-a~a~g~~~~~~~~g~~g~~~~Sf~~~K~ 183 (379)
T PRK11658 107 LMVTPEAIEAAITPRTKAIIPVH--YAGAPADLDAIRAIGERYGIPVIEDA-AHAVGTYYKGRHIGARGTAIFSFHAIKN 183 (379)
T ss_pred CCcCHHHHHHhcccCCeEEEEeC--CCCCcCCHHHHHHHHHHcCCeEEEEC-CCccCCeECCeecCCCCCEEEeCCCCCc
Confidence 34555 788899988666 48999999999999999999999953 44555432 35778888777776 66
Q ss_pred ccccCCCCCCcEEEEEEc-hhhHhcCCC-ceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHHH
Q 001989 359 FGVPMGYGGPHAAFLATS-QEYKRMMPG-RIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAV 436 (985)
Q Consensus 359 lg~P~~~GGP~~G~l~~~-~~~~~~lp~-~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~ 436 (985)
+.+ |+ .|++.++ +++.+++.. +..|+..+.... + ......+..+.+.|+. .-+..+.|++-
T Consensus 184 l~~-----g~-GG~v~~~~~~~~~~~~~~~~~G~~~~~~~~--~--~~~~~~~~~~~~~G~n-----~~~~~l~AAl~-- 246 (379)
T PRK11658 184 ITC-----AE-GGLVVTDDDELADRLRSLKFHGLGVDAFDR--Q--TQGRAPQAEVLTPGYK-----YNLADINAAIA-- 246 (379)
T ss_pred Ccc-----cC-ceEEEECCHHHHHHHHHHHHcCCCcchhhh--h--cccCCCcceeeccccc-----cCcCHHHHHHH--
Confidence 632 22 3556654 566554421 222322111000 0 0000111111123331 12234555552
Q ss_pred HhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEc-CC--CC---cceEEEecC----C--HHHHHHHHHHcCceeeee--
Q 001989 437 YHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQ-GL--PF---FDTVKVKCA----D--AHAIASAAYKIEMNLRVV-- 502 (985)
Q Consensus 437 ~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~-~~--~~---~~~~~~~~~----~--~~~v~~~L~~~GI~~~~~-- 502 (985)
+...++++++.++..++++++.+.|++++ +..+ .+ .. ...+++.++ + ..++.+.|.++||..+..
T Consensus 247 ~~ql~~l~~~~~~r~~~a~~~~~~L~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~L~~~gI~~~~~~~ 325 (379)
T PRK11658 247 LVQLAKLEALNARRREIAARYLQALADLP-FQPLSLPAWPHQHAWHLFIIRVDEERCGISRDALMEALKERGIGTGLHFR 325 (379)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CccCcCCCCCCceeEEEEEEEECCccccCCHHHHHHHHHHCCCCCcccCc
Confidence 22236899999999999999999999886 4332 11 11 123444432 2 678999999999864310
Q ss_pred -----------------------cCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 503 -----------------------DSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 503 -----------------------~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
....+.+-++..-|+||+++.+++++.
T Consensus 326 ~~~~~~~~~~~~~~~~~p~~~~~~~~~l~lP~~~~l~~~~~~~i~~~i~~ 375 (379)
T PRK11658 326 AAHTQKYYRERFPTLSLPNTEWNSERICSLPLFPDMTDADVDRVITALQQ 375 (379)
T ss_pred CcccChhhhccCCCCCChHHHHHHhCeEEccCCCCCCHHHHHHHHHHHHH
Confidence 024466666777889999999988864
|
|
| >TIGR03538 DapC_gpp succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.9e-13 Score=157.08 Aligned_cols=293 Identities=12% Similarity=0.073 Sum_probs=176.4
Q ss_pred hhhHHHHHHHHHHHHHHHhCC----Ccc-ceecCcHHH-HHHHHHHHHHHHHHhcCCCCCCE--EEEcCCCCcccHHHHH
Q 001989 627 AQGYQEMFNNLGEWLCTITGF----DSF-SLQPNAGAA-GEYAGLMVIRAYHKARGDHHRNV--CIIPVSAHGTNPATAA 698 (985)
Q Consensus 627 ~~G~~~~~~e~~~~la~l~G~----~~~-~~~~~sGa~-a~~a~l~air~~~~~~g~~~~~~--IIv~~~~Hg~~~~~a~ 698 (985)
.+|..++.+.+.+++.+.+|. +.. .+..++|++ +... +++.+. ++++. |+++++.+..+...++
T Consensus 63 ~~G~~~lr~aia~~~~~~~~~~~~~~~~~~i~it~Ga~~al~~---~~~~l~-----~~gd~~~vlv~~P~y~~~~~~~~ 134 (393)
T TIGR03538 63 TKGLPELRQAIARWLERRFDLPTGVDPERHVLPVNGTREALFA---FAQAVI-----NPGQAPLVVMPNPFYQIYEGAAL 134 (393)
T ss_pred CCCCHHHHHHHHHHHHHhhCCcccCCCCceEEECCCcHHHHHH---HHHHHc-----CCCCcceEEecCCCCcchHHHHH
Confidence 357666666666666666554 333 455555544 4432 333322 35554 8889887777777788
Q ss_pred HCCcEEEEEcCCCC--CCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccc--cCHHHHHHHHHHcCCEEEEEccccccc
Q 001989 699 MCGMKIVSVGTDAK--GNINIEELRKAAEANRDNLSTLMVTYP-STHGVYE--EGIDEICKIIHDNGGQVYMDGANMNAQ 773 (985)
Q Consensus 699 ~~G~~vv~v~~d~~--g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~--~di~eI~~la~~~galliVD~a~~~~~ 773 (985)
..|++++.+|++++ +.+|++++++++. +++++|++++| |++|.+. ..+++|.++|+++|+++++|.++..-.
T Consensus 135 ~~g~~~~~v~~~~~~~~~~d~~~l~~~~~---~~~k~i~l~~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~~~ 211 (393)
T TIGR03538 135 LAGAEPYFLNCTAENGFLPDFDAVPESVW---RRCQLLFVCSPGNPTGAVLSLDTLKKLIELADQYGFIIASDECYSELY 211 (393)
T ss_pred hcCCeEEEeeccccCCCCCCHHHHHHHHh---hcceEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCEEEEECcchhhcc
Confidence 89999999998643 5789999999987 68899999999 5799886 138899999999999999999874211
Q ss_pred -cC-CCCC------CccCC-----cEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCC
Q 001989 774 -VG-LTSP------GYIGA-----DVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLG 840 (985)
Q Consensus 774 -~~-l~~p------g~~g~-----Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~ 840 (985)
.. ...+ ...+. -+++.|+.|.|++| |.++|++++++++...+.... .....
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~~~----GlRvG~~i~~~~l~~~~~~~~------------~~~~~ 275 (393)
T TIGR03538 212 FDEGNPPAGLLQAAAQLGRDDFRRCLVFHSLSKRSNLP----GLRSGFVAGDAEILKAFLRYR------------TYHGC 275 (393)
T ss_pred cCCCCCCcCHHHhcccccccccccEEEEecchhhcCCc----ccceEEEecCHHHHHHHHHHH------------Hhhcc
Confidence 10 0000 01121 26778888877544 789999998876654332100 00000
Q ss_pred CCCCcchhhhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhccCCeeecCCCCceeeEEEEEecCccccCCCCH
Q 001989 841 TIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEP 920 (985)
Q Consensus 841 ~i~s~~~g~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~ 920 (985)
.++ ...+. ++.+.+. ..+-+++..+...++.+.+.+.|++.+.+. .+.+..+ +.++++ .+.
T Consensus 276 ~~~--~~~q~----~~~~~l~--~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~--~p~gg~f--~~~~~~-------~~~ 336 (393)
T TIGR03538 276 AMP--IPTQL----ASIAAWN--DEQHVRENRALYREKFAAVLEILGQVLDLE--LPDAGFY--LWPKVP-------GDD 336 (393)
T ss_pred CcC--HHHHH----HHHHHhc--ChHHHHHHHHHHHHHHHHHHHHHHhhCccc--CCCeeEE--EEEECC-------CCH
Confidence 111 11111 1111121 223355555556777777888887643332 2222222 345543 246
Q ss_pred HHHHHHHH-HCCCccCC-CCC--------CCCCEEEEeccCCCCHHHHHHHHccCChhH
Q 001989 921 EDVAKRLM-DYGFHGPT-MSW--------PVPGTLMIEPTESESKSWTGIVMLSSPSEK 969 (985)
Q Consensus 921 ~~v~~~L~-~~Gi~~~~-~~~--------p~~~~lris~t~~~t~eeId~~~~~~~l~~ 969 (985)
.+++++|. ++||.+.. ..| +..+++||++.. +.++++. .++.|++
T Consensus 337 ~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~~~~~~Ris~~~--~~~~l~~--~l~~l~~ 391 (393)
T TIGR03538 337 EAFARALYEEENVTVLPGRFLAREAEGVNPGEGRVRIALVA--PLEECVE--AAERIRS 391 (393)
T ss_pred HHHHHHHHHHCCEEEeCCccccccccCCCCCCCEEEEEecC--CHHHHHH--HHHHHHH
Confidence 77888875 57998642 111 124789999864 5778777 5455443
|
This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). |
| >PRK06836 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=3e-13 Score=156.92 Aligned_cols=299 Identities=15% Similarity=0.158 Sum_probs=179.8
Q ss_pred hhHHHHHHHHHHHHHHHhCC--Ccccee-cCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEE
Q 001989 628 QGYQEMFNNLGEWLCTITGF--DSFSLQ-PNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKI 704 (985)
Q Consensus 628 ~G~~~~~~e~~~~la~l~G~--~~~~~~-~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~v 704 (985)
.|..++...+.+++....+. ++.++. .++++++...++ +.+. .++++|+++++.+..+...++..|+++
T Consensus 73 ~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~G~~~al~~~~---~~l~-----~~gd~Vli~~p~~~~~~~~~~~~g~~v 144 (394)
T PRK06836 73 AGYPEVREAIAESLNRRFGTPLTADHIVMTCGAAGALNVAL---KAIL-----NPGDEVIVFAPYFVEYRFYVDNHGGKL 144 (394)
T ss_pred CCCHHHHHHHHHHHHHHhCCCCCcCcEEEeCChHHHHHHHH---HHhc-----CCCCEEEEcCCCCccHHHHHHHcCCEE
Confidence 45544444444444443333 333444 444455543333 3221 367899999988877777778899999
Q ss_pred EEEcCCCC-CCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccc--cCHHHHHHHHHH------cCCEEEEEccccccc-
Q 001989 705 VSVGTDAK-GNINIEELRKAAEANRDNLSTLMVTYP-STHGVYE--EGIDEICKIIHD------NGGQVYMDGANMNAQ- 773 (985)
Q Consensus 705 v~v~~d~~-g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~--~di~eI~~la~~------~galliVD~a~~~~~- 773 (985)
+.+|++++ +.+|+++|+++++ +++++|++++| |++|.+. .++++|+++|++ +|+++++|+++..-.
T Consensus 145 ~~v~~~~~~~~~d~~~l~~~~~---~~~~~v~~~~p~NPtG~~~~~~~~~~l~~la~~~~~~~~~~~~ii~De~y~~~~~ 221 (394)
T PRK06836 145 VVVPTDTDTFQPDLDALEAAIT---PKTKAVIINSPNNPTGVVYSEETLKALAALLEEKSKEYGRPIYLISDEPYREIVY 221 (394)
T ss_pred EEEecCCccCcCCHHHHHhhcC---cCceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHhhhccCCCeEEEEecccccccc
Confidence 99999766 7899999999997 78999999998 4799986 147888888998 899999999874211
Q ss_pred cCCCCC---CccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCc---CCCCccccCCCCCCCCCCCCCCCCCCcch
Q 001989 774 VGLTSP---GYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPF---LPSHPVVSTGGIPAPEKSQPLGTIAAAPW 847 (985)
Q Consensus 774 ~~l~~p---g~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~---lp~~~~g~~~~~~~~~~~~~~~~i~s~~~ 847 (985)
.+-..+ ..+.-.+++.|++|.|+.| |-++|++++++.+.+. ....... . ...+..+.+..
T Consensus 222 ~~~~~~~~~~~~~~~i~~~S~SK~~~~p----GlRiG~~~~~~~~~~~~~~~~~~~~~---------~-~~~~~~~~~~~ 287 (394)
T PRK06836 222 DGAEVPYIFKYYDNSIVVYSFSKSLSLP----GERIGYIAVNPEMEDADDLVAALVFA---------N-RILGFVNAPAL 287 (394)
T ss_pred CCCCCCChHHccCcEEEEecchhhccCc----ceeeEEEecCHHHhhhHHHHHHHHHH---------h-hccccccCCHH
Confidence 110001 1223357788999988544 5679999988654321 1000000 0 00001111111
Q ss_pred hhhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHH
Q 001989 848 GSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKR 926 (985)
Q Consensus 848 g~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~ 926 (985)
.+ .+.+ ..+. ++. ..+...++.+.+.+.|++ ++.+. .+.+.++ +.+.++ ..+..++++.
T Consensus 288 ~q-----~~~~--~~l~-~~~--~~~~~~~~r~~l~~~L~~~g~~~~--~~~gg~~--~~~~~~------~~~~~~~~~~ 347 (394)
T PRK06836 288 MQ-----RVVA--KCLD-ATV--DVSIYKRNRDLLYDGLTELGFECV--KPQGAFY--LFPKSP------EEDDVAFCEK 347 (394)
T ss_pred HH-----HHHH--HHhC-ChH--HHHHHHHHHHHHHHHHHhCCCEee--cCCceEE--EEEeCC------CCCHHHHHHH
Confidence 11 1111 1221 111 123345566778888876 43322 2222222 233443 2367788899
Q ss_pred HHHCCCccCCC-CCCCCCEEEEeccCCCCHHHHHHHHccCChhHHHHhhc
Q 001989 927 LMDYGFHGPTM-SWPVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRLK 975 (985)
Q Consensus 927 L~~~Gi~~~~~-~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~~ 975 (985)
|.++|+.+... .|..++++||++. .++++++. .++.|++++++.+
T Consensus 348 l~~~gv~v~~g~~f~~~~~iRi~~~--~~~~~~~~--~i~~l~~~l~~~~ 393 (394)
T PRK06836 348 AKKHNLLLVPGSGFGCPGYFRLSYC--VDTETIER--SLPAFEKLAKEYK 393 (394)
T ss_pred HHhCCEEEECchhcCCCCeEEEEec--CCHHHHHH--HHHHHHHHHHHhc
Confidence 99999986542 2333589999997 47899999 7788888887543
|
|
| >PRK06176 cystathionine gamma-synthase/cystathionine beta-lyase; Validated | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.3e-13 Score=158.51 Aligned_cols=209 Identities=19% Similarity=0.176 Sum_probs=144.0
Q ss_pred HHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccH----HHHHHCCcEEEEEcC
Q 001989 634 FNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNP----ATAAMCGMKIVSVGT 709 (985)
Q Consensus 634 ~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~----~~a~~~G~~vv~v~~ 709 (985)
..++++.++++.|.+.+ +.++||+.|..+++ ++ . .++++||+++..|+... ..+...|++++.++.
T Consensus 52 ~~~Le~~la~l~g~~~a-l~~~SG~~Al~~~l-~~---l-----~pGd~Vi~~~~~y~~t~~~~~~~~~~~gi~v~~vd~ 121 (380)
T PRK06176 52 RFALEELIADLEGGVKG-FAFASGLAGIHAVF-SL---F-----QSGDHVLLGDDVYGGTFRLFDKVLVKNGLSCTIIDT 121 (380)
T ss_pred HHHHHHHHHHHhCCCCE-EEECCHHHHHHHHH-HH---c-----CCCCEEEEcCCChhHHHHHHHHHHHhcCeEEEEcCC
Confidence 45788999999998765 55678887664322 21 1 37899999877555332 224567999988876
Q ss_pred CCCCCCCHHHHHHHHHhcCCCEEEEEEEcCC-CccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCccCCcEEE
Q 001989 710 DAKGNINIEELRKAAEANRDNLSTLMVTYPS-THGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIGADVCH 788 (985)
Q Consensus 710 d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~pn-~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~g~Di~~ 788 (985)
+ |+++++++++ ++|++|++++|+ ++|.+. |+++|+++||++|+++++|+++.. +....|..+|+|+++
T Consensus 122 ~-----d~e~l~~ai~---~~t~lV~lesP~Nptg~~~-di~~I~~la~~~gi~vivD~t~a~--~~~~~p~~~gaDivv 190 (380)
T PRK06176 122 S-----DLSQIKKAIK---PNTKALYLETPSNPLLKIT-DLAQCASVAKDHGLLTIVDNTFAT--PYYQNPLLLGADIVV 190 (380)
T ss_pred C-----CHHHHHHhcC---cCceEEEEECCCCCCceec-CHHHHHHHHHHcCCEEEEECCccc--cccCCccccCCCEEE
Confidence 3 8999999997 789999999995 799998 899999999999999999998753 233457788999999
Q ss_pred eCCcccccccCCCCCCceEEEEEcc-cccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHH
Q 001989 789 LNLHKTFCIPHGGGGPGMGPIGVKK-HLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKG 867 (985)
Q Consensus 789 ~s~hK~l~~p~g~GGPg~G~i~~~~-~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eG 867 (985)
+|++|+++.| +...+|++++++ ++...+... + ...+...+ + ..+| +...|.+.
T Consensus 191 ~S~tK~l~g~---~d~~gG~vv~~~~~~~~~~~~~------------~-~~~G~~~~-----~---~~~~--l~~~gl~t 244 (380)
T PRK06176 191 HSGTKYLGGH---SDVVAGLVTTNNEALAQEIAFF------------Q-NAIGGVLG-----P---QDSW--LLQRGIKT 244 (380)
T ss_pred ecCceeccCC---ccceeeEEEecHHHHHHHHHHH------------H-HHhcCCCC-----H---HHHH--HHHhccCc
Confidence 9999998522 112367777753 333322100 0 00111111 0 1233 33345556
Q ss_pred HHHHHHHHHHHHHHHHHHhhcc
Q 001989 868 LTEASKIAILNANYMAKRLEKH 889 (985)
Q Consensus 868 l~~~~~~~~~~a~~l~~~L~~g 889 (985)
+..+.++..+++..+.+.|++.
T Consensus 245 l~~R~~~~~~~a~~la~~L~~~ 266 (380)
T PRK06176 245 LGLRMEAHQKNALCVAEFLEKH 266 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHHhC
Confidence 6777788888899999988863
|
|
| >COG1103 Archaea-specific pyridoxal phosphate-dependent enzymes [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.8e-13 Score=140.80 Aligned_cols=304 Identities=15% Similarity=0.178 Sum_probs=190.6
Q ss_pred HHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcCC--C
Q 001989 634 FNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTD--A 711 (985)
Q Consensus 634 ~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~d--~ 711 (985)
+..+.+.+++++|+|.+.+. ++.-+|-++++.++. .++|-|++...+|-+..-+++..|.+|..||.. +
T Consensus 63 I~~F~~dlaeFlg~D~~R~t-~GARe~KfavMhal~--------~~gd~vV~D~~aHYttyvAAEragl~v~eVp~tg~P 133 (382)
T COG1103 63 IKDFLEDLAEFLGMDEVRVT-AGAREAKFAVMHALC--------KEGDWVVVDSLAHYTTYVAAERAGLNVAEVPNTGYP 133 (382)
T ss_pred HHHHHHHHHHHhCCceeeec-ccchhhHHHHHHHhc--------cCCCEEEEcCcchHHHHHHHHhcCCeEEecCCCCCC
Confidence 45666779999999986543 233345566655543 367889999999988888899999999999953 3
Q ss_pred CCCCCHHHHHHHHHhcC----CCEEEEEEEcCC-CccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCccCCcE
Q 001989 712 KGNINIEELRKAAEANR----DNLSTLMVTYPS-THGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIGADV 786 (985)
Q Consensus 712 ~g~iD~e~L~~~i~~~~----~~t~~Vvv~~pn-~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~g~Di 786 (985)
+..+++|...+.|++.+ +..++..+++|. .+|.+. |.++++++|+++|+++++.+|+..+.... +-.+.|+|+
T Consensus 134 ey~i~~e~y~~viee~~~~~g~~~~lallTh~Dg~YGNl~-Dakkva~ic~e~gvPlllN~AYt~Grmpv-s~ke~g~DF 211 (382)
T COG1103 134 EYKITPEGYAEVIEEVKDEGGDPPALALLTHVDGEYGNLA-DAKKVAKICREYGVPLLLNCAYTVGRMPV-SGKEIGADF 211 (382)
T ss_pred ceEecHHHHHHHHHHHHhccCCCceEEEEeccCCCcCCch-hhHHHHHHHHHcCCceEeecceeeccccc-cccccCCCE
Confidence 47899999888886432 346788889985 689997 99999999999999999999986544332 345779999
Q ss_pred EEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCC-CCCCCCCcchhhhHHHHHHHHHHHHhcH
Q 001989 787 CHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQ-PLGTIAAAPWGSALILPISYTYIAMMGS 865 (985)
Q Consensus 787 ~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~-~~~~i~s~~~g~~~~~~~a~a~l~~lg~ 865 (985)
+++|+||+++. .|| +|++..++++.+..-.+. |.. .. .++- ..+ |+. .|.+.....| .+-.. .
T Consensus 212 iVgSGHKsmAA----s~P-iGvl~~~eE~ae~V~r~S-g~~---~~-~KEvellG--CT~-rGapivTlmA--SfP~V-~ 275 (382)
T COG1103 212 IVGSGHKSMAA----SAP-IGVLAMSEEWAEIVLRRS-GRA---FP-KKEVELLG--CTV-RGAPIVTLMA--SFPHV-V 275 (382)
T ss_pred EEecCccchhc----cCC-eeEEeehhHHHHHHHhhc-ccc---cc-cceeeeec--ccc-cCchHHHHHh--cCHHH-H
Confidence 99999999864 244 788999987765431111 100 00 0110 111 221 2333222211 11111 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhc--cCCeeecCCCCceeeEE-EEEecCc---cccCCCCHHHHHHHHHHCCCccCCCCC
Q 001989 866 KGLTEASKIAILNANYMAKRLEK--HYPILFRGVNGTVAHEF-IVDLRGL---KNTAGIEPEDVAKRLMDYGFHGPTMSW 939 (985)
Q Consensus 866 eGl~~~~~~~~~~a~~l~~~L~~--g~~l~~~~~~~~~~~~~-iv~~~~~---~~~~g~~~~~v~~~L~~~Gi~~~~~~~ 939 (985)
+- .+.++.-.++++|+.++|++ |+..+ |. .|..|.. -+..+.| .+.......-+.+.|.++||+.- ..
T Consensus 276 eR-VkrWdeEv~kaR~fv~elEkigg~~ql--G~-rPk~HdLm~Fetp~f~eIakk~~r~gyFlY~ELK~RgI~GI--~~ 349 (382)
T COG1103 276 ER-VKRWDEEVEKARWFVAELEKIGGVKQL--GE-RPKNHDLMKFETPVFHEIAKKHKRKGYFLYEELKKRGIHGI--QP 349 (382)
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHhhhHHHh--CC-CCcccceeeecCchHHHHHHhCcCCceeeHHHHHhcCcccc--cc
Confidence 11 22344567889999999987 34332 21 1222322 1222211 00001123345667888887742 11
Q ss_pred CCCCEEEEeccCCCCHHHHHHHHccCChhHHHHh
Q 001989 940 PVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHR 973 (985)
Q Consensus 940 p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~ 973 (985)
.....+.+| +.--++|+++. .++++++++++
T Consensus 350 G~Tk~~K~s-vyGl~~Eqve~--V~~afkeI~ek 380 (382)
T COG1103 350 GQTKYFKLS-VYGLSWEQVEY--VVDAFKEIAEK 380 (382)
T ss_pred CceeEEEEE-eecCCHHHHHH--HHHHHHHHHHh
Confidence 122456665 35678999999 88999999875
|
|
| >PRK04260 acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=7e-13 Score=152.86 Aligned_cols=280 Identities=16% Similarity=0.177 Sum_probs=170.4
Q ss_pred HHHHHHHHh-CCCc-cceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEE-cCCCCcccHHHHHHCCcEEE------EE
Q 001989 637 LGEWLCTIT-GFDS-FSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCII-PVSAHGTNPATAAMCGMKIV------SV 707 (985)
Q Consensus 637 ~~~~la~l~-G~~~-~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv-~~~~Hg~~~~~a~~~G~~vv------~v 707 (985)
+++.+++.+ +.+. ..++++||+++++++++.+|.+ .++++||+ ...+||+........|.+.. .+
T Consensus 71 ~~~~la~~l~~~~~~~~~~~~SGseA~~~Al~~ar~~------~~~~~vv~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~ 144 (375)
T PRK04260 71 LQEEVAQKLIGDKDYLAFFCNSGAEANEAAIKIARKA------TGKQEIITFQNSFHGRTFGSMSATGQDKIKDGFGDGV 144 (375)
T ss_pred HHHHHHHHHhcCcCCEEEEcCccHHHHHHHHHHHHHh------cCCCeEEEECCCcCcccHHHHhccCCcccCCCCCCCC
Confidence 344455443 2222 3467799999998888888765 23456666 56789876555433222110 00
Q ss_pred cCCCC-CCCCHHHHHHHHHhcCCCEEEEEEEcCC-CccccccC---HHHHHHHHHHcCCEEEEEccccccccCCCCCC--
Q 001989 708 GTDAK-GNINIEELRKAAEANRDNLSTLMVTYPS-THGVYEEG---IDEICKIIHDNGGQVYMDGANMNAQVGLTSPG-- 780 (985)
Q Consensus 708 ~~d~~-g~iD~e~L~~~i~~~~~~t~~Vvv~~pn-~~G~i~~d---i~eI~~la~~~galliVD~a~~~~~~~l~~pg-- 780 (985)
+.... -..|+++++++++ +++++|+++.++ ..|++.++ +++|.++|+++|+++++|+++. +++.-..+.
T Consensus 145 ~~~~~~~~~dl~~l~~~l~---~~~a~vi~e~v~~~~G~~~~~~~~l~~~~~l~~~~~~~~i~De~~~-g~g~~g~~~~~ 220 (375)
T PRK04260 145 PHFSYAIFNDLNSVKALVN---KNTAAVMLELVQGESGVLPADKDFVKALADYCQETGILLIVDEVQT-GMGRTGKLYAF 220 (375)
T ss_pred CCeEEeCCCCHHHHHHhcC---CCeEEEEECCeECCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhh-CCCcccchhhh
Confidence 00000 1248999999886 688899998774 67887632 8999999999999999999973 332111110
Q ss_pred -c--cCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHH
Q 001989 781 -Y--IGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISY 857 (985)
Q Consensus 781 -~--~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~ 857 (985)
. ..+|+++ +.|.|+ +|-.+|++++++++.+.+.... ..+++.++++.++++.
T Consensus 221 ~~~~~~pdi~t--~sK~l~-----~G~~ig~~~~~~~~~~~~~~~~------------------~~~t~~~~~~~~~aa~ 275 (375)
T PRK04260 221 EHYGIEPDIFT--LAKGLA-----NGVPVGAMLAKSSLGGAFGYGS------------------HGSTFGGNKLSMAAAS 275 (375)
T ss_pred HhhCCCCCEEE--eccccc-----CCcceEEEEEcHHHHhhcCCCC------------------CCCCCCcCHHHHHHHH
Confidence 1 2367764 458774 2445888888887655442110 0011223455566667
Q ss_pred HHHHHhcHHHHHHHHHHHHHHHHHHHHHhhcc---CC-e-eecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCC
Q 001989 858 TYIAMMGSKGLTEASKIAILNANYMAKRLEKH---YP-I-LFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGF 932 (985)
Q Consensus 858 a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~g---~~-l-~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi 932 (985)
+.|..+..+++. ++..++.+++++.|.+. .+ + ...+ .+ .+ +.+.+. .+..++.++|.++|+
T Consensus 276 a~l~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~g-~~--~~~~~~-------~~~~~~~~~l~~~Gi 341 (375)
T PRK04260 276 ATLDIMLTAGFL---EQALENGNYLQEQLQKALQDKETVTTVRG-LG-YM--IGIETT-------ADLSQLVEAARDKGL 341 (375)
T ss_pred HHHHHHHhhHHH---HHHHHHHHHHHHHHHHHHhhCCCeeEEec-cc-eE--EEEEec-------CcHHHHHHHHHhCCC
Confidence 777776554443 34455556666666441 11 1 1111 11 11 233332 256789999999999
Q ss_pred ccCCCCCCCCCEEEEeccCCCCHHHHHHHHccCChhHH
Q 001989 933 HGPTMSWPVPGTLMIEPTESESKSWTGIVMLSSPSEKK 970 (985)
Q Consensus 933 ~~~~~~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~ 970 (985)
.+.... .+.+|++++...+++||++ +++.++++
T Consensus 342 ~v~~~~---~~~lR~~~~~~~t~~~i~~--~l~~l~~~ 374 (375)
T PRK04260 342 IVLTAG---TNVIRLLPPLTLTKEEIEQ--GIAILSEV 374 (375)
T ss_pred EEecCC---CCEEEEcCCCccCHHHHHH--HHHHHHHh
Confidence 874332 3789999999999999999 66777654
|
|
| >PRK08045 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=4.9e-13 Score=153.96 Aligned_cols=273 Identities=15% Similarity=0.115 Sum_probs=181.5
Q ss_pred HHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc---hh
Q 001989 214 LNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL---KD 290 (985)
Q Consensus 214 ~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~---~~ 290 (985)
.++++.+|++.|.+ .+.++.||++++..++.++ . ++||+|++++..|++....+..++...++++..++. ++
T Consensus 55 ~~L~~~lA~l~g~~--~~i~~~sg~~Ai~~~l~~l-~--~~GD~Vl~~~~~y~~~~~~~~~~~~~~gi~v~~vd~~d~e~ 129 (386)
T PRK08045 55 DVVQRALAELEGGA--GAVLTNTGMSAIHLVTTVF-L--KPGDLLVAPHDCYGGSYRLFDSLAKRGCYRVLFVDQGDEQA 129 (386)
T ss_pred HHHHHHHHHHhCCC--eEEEECCHHHHHHHHHHHH-c--CCCCEEEEcCCCcHHHHHHHHHHHhhCCeEEEEeCCCCHHH
Confidence 35778999999965 4888899998877766654 2 389999999999998888777666666778887653 55
Q ss_pred hhc-cCCCEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCCCCCcccceEEEecC-ccccccCCCCC
Q 001989 291 IDY-KSGDVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKPPGELGADIVVGSA-QRFGVPMGYGG 367 (985)
Q Consensus 291 l~~-l~~~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~~~~~~GaDi~v~s~-k~lg~P~~~GG 367 (985)
+++ ++++|++|++.+| |++|.+.|+++|.++||++|++++|| +.++.+....|-++|+|+++.|. |+++++- +
T Consensus 130 l~~~l~~~tklV~l~sP~NPtG~v~di~~I~~ia~~~g~~vivD-eay~~~~~~~pl~~gaDivv~S~tK~l~G~~---d 205 (386)
T PRK08045 130 LRAALAEKPKLVLVESPSNPLLRVVDIAKICHLAREAGAVSVVD-NTFLSPALQNPLALGADLVLHSCTKYLNGHS---D 205 (386)
T ss_pred HHHhcccCCeEEEEECCCCCCCEecCHHHHHHHHHHcCCEEEEE-CCCCccccCCchhhCCCEEEeecceeccCCC---C
Confidence 666 7788999999998 78999999999999999999999994 34455555667789999999998 7775431 1
Q ss_pred CcEEEEEEc-hhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcchHHHH
Q 001989 368 PHAAFLATS-QEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTI 446 (985)
Q Consensus 368 P~~G~l~~~-~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i 446 (985)
--.|++.++ +++.+++- +.+....+|. +++ ..|+...|-+-+..+
T Consensus 206 ~~~G~vi~~~~~~~~~l~----------------------------~~~~~~g~~~-~p~-----~~~l~~rgl~tl~~R 251 (386)
T PRK08045 206 VVAGVVIAKDPDVVTELA----------------------------WWANNIGVTG-GAF-----DSYLLLRGLRTLVPR 251 (386)
T ss_pred ceeEEEEeCcHHHHHHHH----------------------------HHHHhcCCCC-CHH-----HHHHHHhhhccHHHH
Confidence 114566553 44433320 0000011111 111 123455555667888
Q ss_pred HHHHHHHHHHHHHHHhcCCCeE-EcCC-----C-----------CcceEEEecCC----HHHHHHHHHHc--Cceee---
Q 001989 447 AQRVHGLAGTFALGLKKLGTVE-VQGL-----P-----------FFDTVKVKCAD----AHAIASAAYKI--EMNLR--- 500 (985)
Q Consensus 447 ~~~~~~~a~~l~~~L~~~g~~~-~~~~-----~-----------~~~~~~~~~~~----~~~v~~~L~~~--GI~~~--- 500 (985)
.++..+++..+++.|++.+.++ +.-+ | +..-|+|.+++ +.++.+.|.-- +..+.
T Consensus 252 ~~~~~~na~~la~~L~~~p~v~~V~yp~l~~~p~~~~~~~~~~g~g~~~s~~~~~~~~~~~~f~~~l~~~~~~~s~G~~~ 331 (386)
T PRK08045 252 MELAQRNAQAIVKYLQTQPLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFELDGDEQTLRRFLGGLSLFTLAESLGGVE 331 (386)
T ss_pred HHHHHHHHHHHHHHHHcCCCEeEEECCCCCCCcCHHHHHHhCCCCCceEEEEecCcHHHHHHHHHhccceeEeccCCCCc
Confidence 8999999999999999885454 3211 1 11246676654 33444444321 21110
Q ss_pred -----e-----------------ecCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 501 -----V-----------------VDSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 501 -----~-----------------~~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
+ +.++.||+|++.-+.++=|+.|.++|..
T Consensus 332 sl~~~~~~~~~~~~~~~~~~~~gi~~~liR~svGlE~~~dl~~dl~~al~~ 382 (386)
T PRK08045 332 SLISHAATMTHAGMAPEARAAAGISETLLRISTGIEDGEDLIADLENGFRA 382 (386)
T ss_pred eeEeCCCCcccccCCHHHHHhcCCCCCeEEEEeCcCCHHHHHHHHHHHHHH
Confidence 0 1146799999987666656777777753
|
|
| >TIGR01140 L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxylase | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.7e-13 Score=153.49 Aligned_cols=263 Identities=16% Similarity=0.131 Sum_probs=165.5
Q ss_pred HHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcCCCCCC
Q 001989 635 NNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKGN 714 (985)
Q Consensus 635 ~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~d~~g~ 714 (985)
.++++++++++|.+...+..++|++..+..+ ++. . .++ +|+++++.|..+...++..|++++.++
T Consensus 50 ~~lr~~la~~~~~~~~~i~~t~G~~~~i~~~--~~~-l-----~~g-~vl~~~p~y~~~~~~~~~~g~~~~~~~------ 114 (330)
T TIGR01140 50 DELRAAAAAYYGLPAASVLPVNGAQEAIYLL--PRL-L-----APG-RVLVLAPTYSEYARAWRAAGHEVVELP------ 114 (330)
T ss_pred HHHHHHHHHHhCCChhhEEECCCHHHHHHHH--HHH-h-----CCC-eEEEeCCCcHHHHHHHHHcCCEEEEeC------
Confidence 4788999999998765665656655222222 222 1 245 588887777677777788999998887
Q ss_pred CCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccC---HHHHHHHHHHcCCEEEEEccccccccCCCCC----CccCCcE
Q 001989 715 INIEELRKAAEANRDNLSTLMVTYP-STHGVYEEG---IDEICKIIHDNGGQVYMDGANMNAQVGLTSP----GYIGADV 786 (985)
Q Consensus 715 iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~d---i~eI~~la~~~galliVD~a~~~~~~~l~~p----g~~g~Di 786 (985)
|+++++++++ ++++|++++| |++|.+. + +++|+++|+++|+++++|.++....... .. ...+.++
T Consensus 115 -d~~~l~~~~~----~~~~v~i~~p~NPtG~~~-~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~-~~~~~~~~~~~~i 187 (330)
T TIGR01140 115 -DLDRLPAALE----ELDVLVLCNPNNPTGRLI-PPETLLALAARLRARGGWLVVDEAFIDFTPDA-SLAPQAARFPGLV 187 (330)
T ss_pred -CHHHHHhhcc----cCCEEEEeCCCCCCCCCC-CHHHHHHHHHHhHhcCCEEEEECcccccCCcc-chhhHhccCCCEE
Confidence 7899998884 4668888998 5799987 5 7778888899999999999874211110 11 1124568
Q ss_pred EEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHH
Q 001989 787 CHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSK 866 (985)
Q Consensus 787 ~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~e 866 (985)
++.|++|+|+.| |-++|++++++++...+.... ...+++ .....++..++. ..
T Consensus 188 ~~~S~SK~~g~~----G~R~G~i~~~~~~~~~l~~~~--------------~~~~~s------~~~q~~~~~~l~---~~ 240 (330)
T TIGR01140 188 VLRSLTKFFGLA----GLRLGFVVAHPALLARLREAL--------------GPWTVN------GPARAAGRAALA---DT 240 (330)
T ss_pred EEEecchhhcCc----hhhhhheeCCHHHHHHHHhcC--------------CCCCch------HHHHHHHHHHHh---ch
Confidence 899999998543 456899999887665443210 001111 111222223332 22
Q ss_pred HH-HHHHHHHHHHHHHHHHHhhccCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCC-CCCC--CC
Q 001989 867 GL-TEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPT-MSWP--VP 942 (985)
Q Consensus 867 Gl-~~~~~~~~~~a~~l~~~L~~g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~-~~~p--~~ 942 (985)
++ ++..++...+.+++.+.|++...+...+. ...+ +.+.++ +..++.++|.++||.+.. ..|+ ..
T Consensus 241 ~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~-~~~f--~~~~~~--------~~~~l~~~l~~~gi~v~pg~~f~~~~~ 309 (330)
T TIGR01140 241 AWQAATRARLAAERARLAALLARLGGLEVVGG-TALF--LLVRTP--------DAAALHEALARRGILIRDFDNFPGLDP 309 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCceECCC-CCeE--EEEEcC--------CHHHHHHHHHHCCEEEEECCCCCCCCC
Confidence 33 44455677788888888887221222222 2222 334443 357899999999998654 3343 23
Q ss_pred CEEEEeccCCCCHHHHHH
Q 001989 943 GTLMIEPTESESKSWTGI 960 (985)
Q Consensus 943 ~~lris~t~~~t~eeId~ 960 (985)
+++||+++.. .++ ++
T Consensus 310 ~~iRi~~~~~--~~~-~~ 324 (330)
T TIGR01140 310 RYLRFALPTD--EEN-DR 324 (330)
T ss_pred CEEEEEecCH--HHH-HH
Confidence 6899998532 244 77
|
This family contains pyridoxal phosphate-binding class II aminotransferases (see PFAM:PF00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella. |
| >PLN00143 tyrosine/nicotianamine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=7.4e-13 Score=154.36 Aligned_cols=310 Identities=12% Similarity=0.096 Sum_probs=179.5
Q ss_pred hhHHHHHHHHHHHHHHHhCC--CccceecCcHHH-HHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEE
Q 001989 628 QGYQEMFNNLGEWLCTITGF--DSFSLQPNAGAA-GEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKI 704 (985)
Q Consensus 628 ~G~~~~~~e~~~~la~l~G~--~~~~~~~~sGa~-a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~v 704 (985)
+|..++.+.+.+++.+..|. +...+..++|++ +. .++++.+. .++++|+++.+.+..+...++..|+++
T Consensus 74 ~G~~~lr~aia~~~~~~~g~~~~~~~I~it~G~~~al---~~~~~~l~-----~~gd~v~v~~P~y~~~~~~~~~~g~~~ 145 (409)
T PLN00143 74 GGILPARRAIADYLSNDLPYQLSPDDVYLTLGCKHAA---EIIIKVLA-----RPEANILLPRPGFPDVETYAIFHHLEI 145 (409)
T ss_pred CCCHHHHHHHHHHHHhhcCCCCCHhhEEEecChHHHH---HHHHHHHc-----CCCCEEEEcCCCCcCHHHHHHHcCCEE
Confidence 56555555555555544443 334555555544 44 33333332 478899999988877777788999999
Q ss_pred EEEcCC--CCCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccc--cCHHHHHHHHHHcCCEEEEEcccccc-ccCCC-
Q 001989 705 VSVGTD--AKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYE--EGIDEICKIIHDNGGQVYMDGANMNA-QVGLT- 777 (985)
Q Consensus 705 v~v~~d--~~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~--~di~eI~~la~~~galliVD~a~~~~-~~~l~- 777 (985)
+.++.+ .++.+|+++|+++++ ++++++++++| |++|.+. ..+++|.++|+++|+++++|.++..- ..+-.
T Consensus 146 ~~~~~~~~~~~~~d~~~l~~~~~---~~~~~~~~~nP~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~ 222 (409)
T PLN00143 146 RHFDLLPEKGWEVDLDAVEAIAD---ENTIAMVIINPGNPCGSVYSYEHLNKIAETARKLGILVIADEVYGHIVFGSKPF 222 (409)
T ss_pred EEEeccCCCCCcCCHHHHHHhcc---cCCEEEEEECCCCCCCCccCHHHHHHHHHHHHHcCCeEEEEccccccccCCCCC
Confidence 999874 235799999999886 67889999999 5799986 13788899999999999999987421 11100
Q ss_pred CC-CccC---CcEEEeCCcccccccCCCCCCceEEEEEc-c-cccCcCC--CCccccCCCCCCCCCCCCCCCCCCcchhh
Q 001989 778 SP-GYIG---ADVCHLNLHKTFCIPHGGGGPGMGPIGVK-K-HLAPFLP--SHPVVSTGGIPAPEKSQPLGTIAAAPWGS 849 (985)
Q Consensus 778 ~p-g~~g---~Di~~~s~hK~l~~p~g~GGPg~G~i~~~-~-~l~~~lp--~~~~g~~~~~~~~~~~~~~~~i~s~~~g~ 849 (985)
.+ ..+. -=+++.|+.|.|++| |.++|++++. + .+.+.+. ..+ . ........++ ...+
T Consensus 223 ~~~~~~~~~~~vi~~~SfSK~f~~p----GlRvG~~v~~~p~~~~~~~~~~~~~-~---------~~~~~~~~~~-~~~q 287 (409)
T PLN00143 223 VPMGLFASIVPVITLGSISKRWMIP----GWGLGWLVTCDPSGLLQICEIADSI-K---------KALNPAPFPP-TFIQ 287 (409)
T ss_pred cchhhhcccCcEEEEccchhhcCCC----ccceEEEEeeCchhhhhhHHHHHHH-H---------HHHhccCCCC-chHH
Confidence 11 1111 125677888887654 7899999983 3 2321110 000 0 0000001111 1111
Q ss_pred hHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhcc-CCeeecCCCCceeeEEEEEecCccccCCC-CHHHHHHHH
Q 001989 850 ALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKH-YPILFRGVNGTVAHEFIVDLRGLKNTAGI-EPEDVAKRL 927 (985)
Q Consensus 850 ~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~g-~~l~~~~~~~~~~~~~iv~~~~~~~~~g~-~~~~v~~~L 927 (985)
.++..+|..-..+-+++..++..++.+++.+.|++. .......+.+..+ +.++++.... .+. +..+++..|
T Consensus 288 ----~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~p~gg~f--~w~~l~~~~~-~~~~~~~~~~~~l 360 (409)
T PLN00143 288 ----AAIPEILEKTTEDFFSKTINILRAALAFCYDKLKEIPCIMCPQKAEGAFF--ALVKLNLLLL-EDIEDDMEFCLKL 360 (409)
T ss_pred ----HHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCeeEE--EEEecchhhc-CCCCCHHHHHHHH
Confidence 111222321112334555556666677788888762 1111112222222 3455531000 011 355666554
Q ss_pred -HHCCCccCC-CCCCCCCEEEEeccCCCCHHHHHHHHccCChhHHHHhh
Q 001989 928 -MDYGFHGPT-MSWPVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRL 974 (985)
Q Consensus 928 -~~~Gi~~~~-~~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~ 974 (985)
.++|+.+.. ..|..++++||++. .+.+++++ .++.|++.+++.
T Consensus 361 l~~~gV~v~pg~~f~~~~~iRi~~~--~~~~~l~~--al~rl~~~l~~~ 405 (409)
T PLN00143 361 AKEESLIILPGVTVGLKNWLRITFA--VEQSSLED--GLGRLKSFCGRH 405 (409)
T ss_pred HHhCCEEEeCccccCCCCeEEEEEc--CCHHHHHH--HHHHHHHHHHHh
Confidence 678998643 23444689999997 45888888 777788777643
|
|
| >PRK08133 O-succinylhomoserine sulfhydrylase; Validated | Back alignment and domain information |
|---|
Probab=99.58 E-value=5.5e-14 Score=162.36 Aligned_cols=209 Identities=20% Similarity=0.229 Sum_probs=148.0
Q ss_pred HHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHH----HHHHCCcEEEEEcC
Q 001989 634 FNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPA----TAAMCGMKIVSVGT 709 (985)
Q Consensus 634 ~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~----~a~~~G~~vv~v~~ 709 (985)
..++++.+++++|.+.+ +.+++|++|+.++++++. +++|+||+++..|+.... .+...|++++.+++
T Consensus 63 ~~~le~~la~l~g~~~~-v~~ssG~~Ai~~al~al~--------~~Gd~Vi~~~~~y~~t~~~~~~~~~~~G~~v~~vd~ 133 (390)
T PRK08133 63 VTMFQERLAALEGAEAC-VATASGMAAILAVVMALL--------QAGDHVVSSRSLFGSTVSLFEKIFARFGIETTFVDL 133 (390)
T ss_pred HHHHHHHHHHHhCCCcE-EEECCHHHHHHHHHHHHh--------CCCCEEEEccCcchhHHHHHHHHHHHcCcEEEEECC
Confidence 56789999999998764 556778877755554432 367899998887765433 24568999999987
Q ss_pred CCCCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCccCCcEEE
Q 001989 710 DAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIGADVCH 788 (985)
Q Consensus 710 d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~g~Di~~ 788 (985)
+ |+++++++++ ++|++|++++| |++|.+. |+++|+++||++|+++++|+++.. +....|..+|+|+++
T Consensus 134 ~-----d~~~l~~~i~---~~tklV~ie~p~NptG~v~-dl~~I~~la~~~gi~livD~t~~~--~~~~~pl~~g~Divv 202 (390)
T PRK08133 134 T-----DLDAWRAAVR---PNTKLFFLETPSNPLTELA-DIAALAEIAHAAGALLVVDNCFCT--PALQQPLKLGADVVI 202 (390)
T ss_pred C-----CHHHHHHhcC---cCCeEEEEECCCCCCCCcC-CHHHHHHHHHHcCCEEEEECCCcc--cccCCchhhCCcEEE
Confidence 4 8999999997 88999999998 5799998 899999999999999999998742 223456678999999
Q ss_pred eCCcccccccCCCCCCc-eEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHH
Q 001989 789 LNLHKTFCIPHGGGGPG-MGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKG 867 (985)
Q Consensus 789 ~s~hK~l~~p~g~GGPg-~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eG 867 (985)
.|+||+++. .|.. +|+++.+++....+.... + ..+...+ + ..+|..+ .|.+.
T Consensus 203 ~S~sK~~~g----~g~~~GG~vv~~~~~~~~~~~~~-----------~--~~g~~~~-----~---~~a~~~l--~gl~t 255 (390)
T PRK08133 203 HSATKYLDG----QGRVLGGAVVGSKELMEEVFGFL-----------R--TAGPTLS-----P---FNAWVFL--KGLET 255 (390)
T ss_pred eecceeecC----CcceEeEEEEcCHHHHHHHHHHH-----------H--HhCCCCC-----H---HHHHHHH--cccch
Confidence 999999852 2333 367777665433221000 0 0111111 1 1233333 34456
Q ss_pred HHHHHHHHHHHHHHHHHHhhcc
Q 001989 868 LTEASKIAILNANYMAKRLEKH 889 (985)
Q Consensus 868 l~~~~~~~~~~a~~l~~~L~~g 889 (985)
+..+.++..+++..+.+.|++.
T Consensus 256 l~~R~~~~~~~a~~la~~L~~~ 277 (390)
T PRK08133 256 LSLRMEAHSANALALAEWLEAH 277 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHhC
Confidence 7777788889999999999863
|
|
| >PRK07810 O-succinylhomoserine sulfhydrylase; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=5.6e-14 Score=162.62 Aligned_cols=210 Identities=18% Similarity=0.166 Sum_probs=147.3
Q ss_pred HHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCccc-H---HHHHHCCcEEEEEcC
Q 001989 634 FNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTN-P---ATAAMCGMKIVSVGT 709 (985)
Q Consensus 634 ~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~-~---~~a~~~G~~vv~v~~ 709 (985)
.+++++.++++.|.+. .+.+++|+.|+.+++.++. .++|+||++...|+.. . ..++..|++++.++.
T Consensus 72 ~~~le~~lA~l~g~~~-al~~~sG~~Ai~~~l~all--------~~Gd~Vl~~~~~~~~t~~~~~~~~~~~G~~v~~vd~ 142 (403)
T PRK07810 72 VSMFEERLRLIEGAEA-CFATASGMSAVFTALGALL--------GAGDRLVAARSLFGSCFVVCNEILPRWGVETVFVDG 142 (403)
T ss_pred HHHHHHHHHHHhCCCc-EEEECChHHHHHHHHHHHh--------CCCCEEEEccCCcchHHHHHHHHHHHcCcEEEEECC
Confidence 4578999999999875 4566788877755544432 3788999988666543 2 224568999999986
Q ss_pred CCCCCCCHHHHHHHHHhcCCCEEEEEEEcCC-CccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCccCCcEEE
Q 001989 710 DAKGNINIEELRKAAEANRDNLSTLMVTYPS-THGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIGADVCH 788 (985)
Q Consensus 710 d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~pn-~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~g~Di~~ 788 (985)
+ |+++++++++ ++|++|++++|+ ++|.+. |+++|+++||++|++++||+++.. +....|..+|+|+++
T Consensus 143 ~-----d~~~l~~ai~---~~tklV~~esp~Nptg~v~-dl~~I~~la~~~g~~vivD~a~a~--~~~~~~~~~gaDivv 211 (403)
T PRK07810 143 E-----DLSQWEEALS---VPTQAVFFETPSNPMQSLV-DIAAVSELAHAAGAKVVLDNVFAT--PLLQRGLPLGADVVV 211 (403)
T ss_pred C-----CHHHHHHhcC---cCceEEEEECCCCCCCeec-CHHHHHHHHHHcCCEEEEECCCCc--cccCChhhcCCcEEE
Confidence 3 8999999997 789999999994 799887 899999999999999999999753 223456678999999
Q ss_pred eCCcccccccCCCCCCceEEEEEcccccC-cCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHH
Q 001989 789 LNLHKTFCIPHGGGGPGMGPIGVKKHLAP-FLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKG 867 (985)
Q Consensus 789 ~s~hK~l~~p~g~GGPg~G~i~~~~~l~~-~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eG 867 (985)
+|++|+++.+ |..-+|+++++++... .+.... + .++...+ + ..+|..++ +-+-
T Consensus 212 ~S~tK~l~g~---g~~~gG~v~~~~~~~~~~l~~~~-----------~--~~g~~~s-----~---~~a~l~l~--~L~t 265 (403)
T PRK07810 212 YSGTKHIDGQ---GRVLGGAILGDREYIDGPVQKLM-----------R--HTGPALS-----A---FNAWVLLK--GLET 265 (403)
T ss_pred ccCCceecCC---cCceeEEEEeChHHHHHHHHHHH-----------H--HhCCCCC-----H---HHHHHHHh--ccCc
Confidence 9999998521 1112588887765332 121000 0 0111111 1 12333333 4455
Q ss_pred HHHHHHHHHHHHHHHHHHhhcc
Q 001989 868 LTEASKIAILNANYMAKRLEKH 889 (985)
Q Consensus 868 l~~~~~~~~~~a~~l~~~L~~g 889 (985)
+..+.++..+++..+.+.|++.
T Consensus 266 l~~R~~~~~~~a~~~a~~L~~~ 287 (403)
T PRK07810 266 LALRVRHSNASALRIAEFLEGH 287 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHhcC
Confidence 6777888899999999999863
|
|
| >PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal) | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.5e-13 Score=155.33 Aligned_cols=322 Identities=16% Similarity=0.172 Sum_probs=187.5
Q ss_pred CCcc-ccCCCCCCCCCCCCCHHHHHHHHHHHhcCCC-ccc--eecCCCCCCCCCcHHHHHHHHhCCccccccCCChhhHh
Q 001989 131 PKSI-RIDSMKFSKFDEGLTESQMIEHMQKLASMNK-VYK--SFIGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIA 206 (985)
Q Consensus 131 p~~~-~~~~~~lp~~~~~~se~e~~~~~~~l~~~n~-~~~--~~lG~g~y~~~~p~~v~~~i~~~~~~~t~~~pyq~e~s 206 (985)
|+++ ..-+..+| .++.+..++++.+++...... .+. .|.|--.-+.-.+..+.+.+.. ...-+.+..+.+
T Consensus 1 P~~l~~~~~~~lp--~~~~~~~~vl~~~~~~l~~~~~~~~~P~~~~~~~~~~~~~~i~~~~l~~----~~n~n~~~~~~~ 74 (373)
T PF00282_consen 1 PGELRARLDEELP--EEGESLEEVLKDLREILAPGVTHWHHPRFFGFVPGGPSPASILADLLAS----ALNQNGFTWEAS 74 (373)
T ss_dssp TTSSGGGCHCCHH--SSHH-HHHHHHHHHHHTHGCS-TTTSTTBESSSHT--CHHHHHHHHHHH----HHT-BTTSTTTS
T ss_pred ChhhhhcCccccc--cCCCCHHHHHHHHHHHhhccCCCCCChhHhhhccCCccHHHHHHHHHHh----hhcccccccccc
Confidence 4444 22235666 456689999999987644332 221 2322111111122223322221 011123334556
Q ss_pred hhHHHHHHHHHHHHHHhcCCCC-------cceeeccchHHHHHHHHHHhhhh-------cC----CCCEEEEcCCCChhH
Q 001989 207 QGRLESLLNFQTMIADLTGLPM-------SNASLLDEGTAAAEAMAMCNNIQ-------KG----KKKTFIIASNCHPQT 268 (985)
Q Consensus 207 qg~l~~i~e~q~~ia~L~g~~~-------~~~sl~~~~ta~~ea~~~a~~~~-------~~----~g~~Vlv~~~~H~s~ 268 (985)
....+...+.-.++++|+|.+. +...+++|||.+...++++.|-. .+ ++-.|++++..|.|+
T Consensus 75 P~~~~~E~~vi~~l~~l~g~~~~~~~~~~~~G~~t~Ggt~anl~al~aAR~~~~~~~~~~~~~~~~~~~i~~s~~aH~S~ 154 (373)
T PF00282_consen 75 PAATEIEREVIRWLADLFGLPESFTFSKDAGGVFTSGGTEANLYALLAARERALPRSKAKGVEEIPKPVIYVSEQAHYSI 154 (373)
T ss_dssp HHHHHHHHHHHHHHHHHTTGSGGTTSTTTSEEEEESSHHHHHHHHHHHHHHHHHHHHHHHTTTHCSSEEEEEETTS-THH
T ss_pred cccccchHHHHHHHHHHhCCcccccccCCCceeEeccchHHHHHHHHHHHHHHhhhhhhcccccccccccccccccccHH
Confidence 6667777888899999999993 34678888886555444433211 11 223688999999999
Q ss_pred HHHHHHhhcCCCeEEEEeCch--------hhhc-c-----CCCEe-EEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEE
Q 001989 269 IDICITRADGFDIKVVVSDLK--------DIDY-K-----SGDVC-GVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMA 332 (985)
Q Consensus 269 ~~~~~~~a~~~gi~v~~v~~~--------~l~~-l-----~~~t~-~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~ 332 (985)
.+.+.- .|+.++.|+.+ +|++ + ...+. +|+.+.+ +.+|.++|+++|+++|++++++++||
T Consensus 155 ~Kaa~~----lGlg~~~I~~~~~~~md~~~L~~~l~~~~~~g~~p~~vvat~Gtt~~Ga~D~l~~i~~i~~~~~~wlHVD 230 (373)
T PF00282_consen 155 EKAARI----LGLGVRKIPTDEDGRMDIEALEKALEKDIANGKTPFAVVATAGTTNTGAIDPLEEIADICEKYNIWLHVD 230 (373)
T ss_dssp HHHHHH----TTSEEEEE-BBTTSSB-HHHHHHHHHHHHHTTEEEEEEEEEBS-TTTSBB-SHHHHHHHHHHCT-EEEEE
T ss_pred HHhcce----eeeEEEEecCCcchhhhHHHhhhhhcccccccccceeeeccCCCcccccccCHHHHhhhccccceeeeec
Confidence 998764 46667777653 4554 3 12233 5666776 57999999999999999999999996
Q ss_pred ecCccccCCCC------CCcccceEEEecC-ccccccCCCCCCcEEEEEEchh-hHh-cC--CCceeeeeecCCCCccee
Q 001989 333 TDLLALTILKP------PGELGADIVVGSA-QRFGVPMGYGGPHAAFLATSQE-YKR-MM--PGRIVGVSIDSSGKPALR 401 (985)
Q Consensus 333 a~~~~lg~l~~------~~~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~-~~~-~l--p~~~vG~t~d~~g~~~~~ 401 (985)
+-.-+..++.+ .+--+||-+..+. |+++.|+. +|++.+|++ .++ .+ .+.+++-. +.+....+
T Consensus 231 aA~gg~~~~~~~~~~~~~gi~~adSit~d~HK~l~~P~~-----~~~~l~r~~~~l~~~~~~~~~Yl~~~-~~~~~~~~- 303 (373)
T PF00282_consen 231 AAYGGSALLSPEYRHLLFGIERADSITIDPHKWLGVPYG-----CGVLLVRDKSDLRDAFSINADYLGND-DRESDESY- 303 (373)
T ss_dssp ETTGGGGGGHCTTGGGGTTGGGESEEEEETTTTTS-SSS------EEEEESSGGGHHGGGEEEETCTT-S--SSS-GGG-
T ss_pred ccccccccccccccccccccccccccccchhhhhcCCcc-----ceeEEeecccchHHHhccChhhhccc-cccccccc-
Confidence 52222112211 1224689999999 77777865 567878764 332 22 11111100 00000000
Q ss_pred eecccccccccccccCC-CccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCCCcceEEE
Q 001989 402 VAMQTREQHIRRDKATS-NICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDTVKV 480 (985)
Q Consensus 402 l~l~tre~~irre~ats-ni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~~~~~~~~ 480 (985)
..++. --|| ....++..-+.+..+|.+|++++.++..+++++++++|++.++++++.++.++.|+|
T Consensus 304 ------------~~~~~tl~~S-R~~~alk~w~~l~~~G~~G~~~~i~~~~~~a~~l~~~l~~~~~~el~~~~~~~~vcF 370 (373)
T PF00282_consen 304 ------------DYGDYTLQGS-RRFRALKLWATLKSLGREGYRERIRRCIELARYLADRLRKDPRFELVNEPDLNIVCF 370 (373)
T ss_dssp ------------CEEEGSSSSS-GHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTEEESSTTSSSEEEE
T ss_pred ------------cccccccccc-ccchHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEcCCCceEEEE
Confidence 01111 1122 233344444446889999999999999999999999999997699998888888888
Q ss_pred ec
Q 001989 481 KC 482 (985)
Q Consensus 481 ~~ 482 (985)
+.
T Consensus 371 r~ 372 (373)
T PF00282_consen 371 RY 372 (373)
T ss_dssp EE
T ss_pred Ee
Confidence 64
|
Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A .... |
| >TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase | Back alignment and domain information |
|---|
Probab=99.57 E-value=7.4e-14 Score=160.87 Aligned_cols=208 Identities=18% Similarity=0.220 Sum_probs=147.0
Q ss_pred HHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHH----HHHHCCcEEEEEcC
Q 001989 634 FNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPA----TAAMCGMKIVSVGT 709 (985)
Q Consensus 634 ~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~----~a~~~G~~vv~v~~ 709 (985)
..++++.+++++|.+.+ +..+||+.|+.+++.++. +++++||++...|+.... .+...|++++.++.
T Consensus 56 ~~~le~~la~l~g~~~~-~~~~sG~~Ai~~al~al~--------~~Gd~Vl~~~~~~~~t~~~~~~~~~~~g~~v~~v~~ 126 (380)
T TIGR01325 56 VAAFEERIAALEGAERA-VATATGMSAIQAALMTLL--------QAGDHVVASRSLFGSTVGFISEILPRFGIEVSFVDP 126 (380)
T ss_pred HHHHHHHHHHHhCCCcE-EEECCHHHHHHHHHHHHh--------CCCCEEEEecCCcchHHHHHHHHHHHhCCEEEEECC
Confidence 45788999999998754 556788887766655442 367899998877765432 34568999999987
Q ss_pred CCCCCCCHHHHHHHHHhcCCCEEEEEEEcCC-CccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCccCCcEEE
Q 001989 710 DAKGNINIEELRKAAEANRDNLSTLMVTYPS-THGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIGADVCH 788 (985)
Q Consensus 710 d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~pn-~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~g~Di~~ 788 (985)
+ |+++++++++ +++++|++++|+ ++|.+. |+++|+++||++|++++||+++... ....|..+|+|+++
T Consensus 127 ~-----d~~~l~~~i~---~~tklV~le~p~np~g~~~-dl~~I~~la~~~gi~livD~a~~~~--~~~~pl~~g~Divv 195 (380)
T TIGR01325 127 T-----DLNAWEAAVK---PNTKLVFVETPSNPLGELV-DIAALAELAHAIGALLVVDNVFATP--VLQQPLKLGADVVV 195 (380)
T ss_pred C-----CHHHHHHhcC---CCceEEEEECCCCCCCeee-CHHHHHHHHHHcCCEEEEECCCccc--ccCCchhhCCCEEE
Confidence 4 8999999987 789999999994 689998 9999999999999999999997432 23356678999999
Q ss_pred eCCcccccccCCCCCC-ceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHH
Q 001989 789 LNLHKTFCIPHGGGGP-GMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKG 867 (985)
Q Consensus 789 ~s~hK~l~~p~g~GGP-g~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eG 867 (985)
.|++|+++. +|- .+|+++.++++.+.+.... + ..+...+ +. .+|..+ .+.+.
T Consensus 196 ~S~sK~l~g----~g~~~gG~vv~~~~~~~~l~~~~-----------~--~~g~~~~-----p~---~a~~~l--~~l~t 248 (380)
T TIGR01325 196 YSATKHIDG----QGRVMGGVIAGSEELMAEVAVYL-----------R--HTGPAMS-----PF---NAWVLL--KGLET 248 (380)
T ss_pred eeccceecC----CCCeEEEEEEeCHHHHHHHHHHH-----------H--hhCCCCC-----HH---HHHHHH--hccCc
Confidence 999999852 122 2477877766544332100 0 0111111 11 123333 34455
Q ss_pred HHHHHHHHHHHHHHHHHHhhc
Q 001989 868 LTEASKIAILNANYMAKRLEK 888 (985)
Q Consensus 868 l~~~~~~~~~~a~~l~~~L~~ 888 (985)
+..+.++..+++.++.+.|++
T Consensus 249 l~~r~~~~~~~a~~la~~L~~ 269 (380)
T TIGR01325 249 LSLRMQKQFDSALAIAEWLQA 269 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHHc
Confidence 666777888899999999986
|
This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis. |
| >COG1982 LdcC Arginine/lysine/ornithine decarboxylases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.3e-13 Score=159.00 Aligned_cols=280 Identities=14% Similarity=0.126 Sum_probs=188.8
Q ss_pred HHHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc--
Q 001989 211 ESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL-- 288 (985)
Q Consensus 211 ~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~-- 288 (985)
..+.|+|+..|+++|++.+++ +++|.|++..++.+|.. ++||+||+++++|.|+...+-. .|...+++.+
T Consensus 70 G~i~eAqe~aA~~fgAd~tyF-vvNGTS~ank~vi~a~~---~~GD~VLvdRN~HKSi~~glil----aGa~Pvyl~p~~ 141 (557)
T COG1982 70 GPIKEAQELAARVFGADHTYF-VVNGTSTANKAVINAVL---TPGDKVLVDRNCHKSIHHGLIL----AGATPVYLEPSR 141 (557)
T ss_pred ccHHHHHHHHHHHhCCCceEE-EECCccHHHHHHHHhhc---CCCCEEEecCCccHHHHHHHHH----cCCceEEecCCC
Confidence 467899999999999998766 56777888888888763 3899999999999999998642 4777777643
Q ss_pred ------------hhhhc--c-CCCE-eEEEEEcCCCCeeeccHHHHHHHHHhCCcEEEEE-ecCcc---ccCCCC-CCcc
Q 001989 289 ------------KDIDY--K-SGDV-CGVLVQYPGTEGEVLDYGDFIKNAHANGVKVVMA-TDLLA---LTILKP-PGEL 347 (985)
Q Consensus 289 ------------~~l~~--l-~~~t-~~V~v~~pn~~G~v~di~~I~~~a~~~galliV~-a~~~~---lg~l~~-~~~~ 347 (985)
+.+++ + .++. +++++|+|+|+|++-|+++|.+.+|..++++.|+ +++.- .+.+.. ..+.
T Consensus 142 np~~gi~ggI~~~~~~~~l~~~~~~~k~~vitnpTYdGv~~n~~~i~~~~~~~~a~v~~deah~~~~~~~~~l~~~~~~~ 221 (557)
T COG1982 142 NPLYGIIGGIPLETFKEALLAHPDAEKLAVITNPTYDGVCYNLRKIVELLHHYGAWVLYDEAHPAHFDFSPMLPESALNG 221 (557)
T ss_pred CccccccCCCCHHHHHHHHHhChhhheeEEEecCccceEeecHHHHHHHHhhcCceEEhhhcCcccccccccCcchhhhc
Confidence 23433 2 3456 8999999999999999999999999999999993 22211 122222 2348
Q ss_pred cceEEEecCccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHH
Q 001989 348 GADIVVGSAQRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALL 427 (985)
Q Consensus 348 GaDi~v~s~k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~ 427 (985)
|+|+++.|.||...-+. .+.++++++. +.+.- ++ -+..|.+ .-|+++.+
T Consensus 222 ~~~~~tqS~HK~l~alS----QaS~iHv~~~--~~~~~-------~r-~nea~~~-----------------h~STSPsY 270 (557)
T COG1982 222 GADFVTQSTHKLLAALS----QASMIHVKDG--RAVNH-------ER-FNEALMM-----------------HQSTSPSY 270 (557)
T ss_pred CceEEEechhhhhhhhh----hhHHHhhCCC--ccCCH-------HH-HHHHHHH-----------------HccCCchH
Confidence 99999999955432222 3456666543 11110 00 0011111 12346677
Q ss_pred HHHHHHHH--HHhCcchH---HHHHHHHHHHHHHHHHHHhcCCCeEEcCCCC-------------------cce--EEEe
Q 001989 428 ANMAAMYA--VYHGPEGL---KTIAQRVHGLAGTFALGLKKLGTVEVQGLPF-------------------FDT--VKVK 481 (985)
Q Consensus 428 a~~aa~~l--~~~g~~Gl---~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~~-------------------~~~--~~~~ 481 (985)
.++|++-. .+.+..|- ++..+...+..+++++...++++|.++.+.. +++ +++.
T Consensus 271 ~l~ASlD~Ar~~~~~~G~~l~~~~~~~~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~whgf~~~~~~~~~lDP~Klti~ 350 (557)
T COG1982 271 PLMASLDVARMQEGNAGRELWQEVIDEAIDFRKALRRLINEIGFFPVLQPEKLDPPTGWHGFEDYADDQYFLDPTKLTIT 350 (557)
T ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCCeeeccccccCCcccccccccccccceeccccEEEEe
Confidence 77777732 23344443 2335666777888888888886587764321 233 5566
Q ss_pred cCC----HHHHHHHHHHcCceeeeecC--CeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 482 CAD----AHAIASAAYKIEMNLRVVDS--NTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 482 ~~~----~~~v~~~L~~~GI~~~~~~~--~~lris~t~~~t~edId~li~aL~~ 529 (985)
.+. +..+.+.|+++||....... ..+.+++.+..+..+++.|++.+..
T Consensus 351 tp~~Gipg~~v~~~L~e~gii~e~~~d~~~lll~~~~~gk~~~lv~~L~~f~r~ 404 (557)
T COG1982 351 TPEFGIPGAIVAKYLREHGIIPEETGDYSNLLLFSPGIGKWQTLVDRLLEFKRR 404 (557)
T ss_pred cCCCCCcHHHHHHHHHHcCCeeeecCCceeeEEeeeccchHHHHHHHHHHHHHh
Confidence 543 88999999999998876543 4466666666788899999998874
|
|
| >PRK06234 methionine gamma-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=7.8e-14 Score=161.59 Aligned_cols=212 Identities=21% Similarity=0.206 Sum_probs=148.7
Q ss_pred HHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHH----HHHCCcEEEEEcC
Q 001989 634 FNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPAT----AAMCGMKIVSVGT 709 (985)
Q Consensus 634 ~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~----a~~~G~~vv~v~~ 709 (985)
..++++.+++++|.+. .+.+++|+.|+.+++.++. .++++||++...|+..... ++..|++++.++.
T Consensus 66 ~~~Le~~iA~~~g~~~-~l~~~sG~~Ai~~al~~ll--------~~Gd~Vl~~~~~y~~~~~~~~~~~~~~G~~v~~vd~ 136 (400)
T PRK06234 66 STEVENKLALLEGGEA-AVVAASGMGAISSSLWSAL--------KAGDHVVASDTLYGCTFALLNHGLTRYGVEVTFVDT 136 (400)
T ss_pred HHHHHHHHHHHhCCCc-EEEEcCHHHHHHHHHHHHh--------CCCCEEEEecCccchHHHHHHHHHhhCCeEEEEECC
Confidence 3478899999999865 4667788877655444332 4788999988877754432 4678999999986
Q ss_pred CCCCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccCHHHHHHHHHHc--CCEEEEEccccccccCCCCCCccCCcE
Q 001989 710 DAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDN--GGQVYMDGANMNAQVGLTSPGYIGADV 786 (985)
Q Consensus 710 d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~--galliVD~a~~~~~~~l~~pg~~g~Di 786 (985)
+ |+++++++++ ++|++|++++| |++|.+. |+++|+++|+++ |+++++|+++..+ .+..|..+++|+
T Consensus 137 ~-----d~e~l~~~i~---~~tklI~iesP~NPtG~v~-dl~~I~~la~~~~~~i~livDea~~~~--~~~~~l~~g~Di 205 (400)
T PRK06234 137 S-----NLEEVRNALK---ANTKVVYLETPANPTLKVT-DIKAISNIAHENNKECLVFVDNTFCTP--YIQRPLQLGADV 205 (400)
T ss_pred C-----CHHHHHHHhc---cCCeEEEEECCCCCCCCcC-CHHHHHHHHHhcCCCCEEEEECCCCch--hcCCchhhCCcE
Confidence 4 8999999997 78999999999 4799998 899999999997 9999999987532 233566678999
Q ss_pred EEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHH
Q 001989 787 CHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSK 866 (985)
Q Consensus 787 ~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~e 866 (985)
++.|++|+|+.+ |...+|++++++++.+.+... +. + ..++...+ + ..+|..+. |-+
T Consensus 206 vv~S~sK~l~g~---g~~~gG~v~~~~~~~~~l~~~--~~--------~-~~~g~~l~-----p---~~a~l~~~--~l~ 261 (400)
T PRK06234 206 VVHSATKYLNGH---GDVIAGFVVGKEEFINQVKLF--GI--------K-DMTGSVIG-----P---FEAFLIIR--GMK 261 (400)
T ss_pred EEeeccccccCC---CCceeEEEEecHHHHHHHHHH--HH--------H-HhcCCCCC-----H---HHHHHHHh--ccC
Confidence 999999999522 112369999887765544210 00 0 00111111 1 11233333 334
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcc
Q 001989 867 GLTEASKIAILNANYMAKRLEKH 889 (985)
Q Consensus 867 Gl~~~~~~~~~~a~~l~~~L~~g 889 (985)
.+..+.++..+++.++.+.|++.
T Consensus 262 tl~~r~~~~~~na~~~a~~L~~~ 284 (400)
T PRK06234 262 TLQIRMEKHCKNAMKVAKFLESH 284 (400)
T ss_pred cHHHHHHHHHHHHHHHHHHHHcC
Confidence 45567777889999999999863
|
|
| >TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase | Back alignment and domain information |
|---|
Probab=99.57 E-value=8.3e-13 Score=151.96 Aligned_cols=212 Identities=18% Similarity=0.178 Sum_probs=150.5
Q ss_pred HHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc---hh
Q 001989 214 LNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL---KD 290 (985)
Q Consensus 214 ~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~---~~ 290 (985)
.++++.+|++.|.+ ++.+++|+++++.+++.++ . ++||+|+++...|+++...+..++...++++..++. ++
T Consensus 54 ~~le~~lA~l~g~~--~v~~~~gg~~Ai~~~l~al-l--~~GD~Vl~~~p~y~~~~~~~~~~~~~~~~~v~~~d~~d~~~ 128 (382)
T TIGR02080 54 DLLQQALAELEGGA--GAVVTNTGMSAIHLVTTAL-L--GPDDLLVAPHDCYGGTYRLLNALAKKGCFRVLFVDQGDEQA 128 (382)
T ss_pred HHHHHHHHHHhCCC--cEEEEcCHHHHHHHHHHHH-c--CCCCEEEEcCCCcHHHHHHHHHHHhhcCeEEEEECCCCHHH
Confidence 35778999999954 5889999999888777765 3 389999999999998888877666666788888754 45
Q ss_pred hhc-cCCCEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCCCCCcccceEEEecC-ccccccCCCCC
Q 001989 291 IDY-KSGDVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKPPGELGADIVVGSA-QRFGVPMGYGG 367 (985)
Q Consensus 291 l~~-l~~~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~~~~~~GaDi~v~s~-k~lg~P~~~GG 367 (985)
+++ ++++|++|++.+| |++|.+.|+++|+++||++|++++|| +.++.+....|-++|+|++++|. |.++++. +
T Consensus 129 l~~ai~~~tklV~l~~p~NPtG~~~dl~~I~~la~~~g~~vvvD-~a~~~~~~~~pl~~gaDivv~S~sK~l~G~~---~ 204 (382)
T TIGR02080 129 LRAALAQKPKLVLIETPSNPLLRVVDIAKICHLAKAVGAVVVVD-NTFLSPALQNPLALGADLVLHSCTKYLNGHS---D 204 (382)
T ss_pred HHHhcCcCceEEEEECCCCCCCEecCHHHHHHHHHHcCCEEEEE-CCCcccccCCchhhCCCEEEeecceeccCCC---C
Confidence 666 7888999999998 78999999999999999999999994 44555555556678999999998 7665321 1
Q ss_pred CcEEEEEEc-hhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcchHHHH
Q 001989 368 PHAAFLATS-QEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTI 446 (985)
Q Consensus 368 P~~G~l~~~-~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i 446 (985)
--.|++.++ +++.+++- ..+...| +|. +++ .+ |+..-|.+-+..+
T Consensus 205 ~~~G~i~~~~~~~~~~l~-------------------------~~~~~~g---~~~-sp~---~a--~l~lr~l~tl~~R 250 (382)
T TIGR02080 205 VIAGAVIAKDPQVAEELA-------------------------WWANNLG---VTG-GAF---DS--YLTLRGLRTLVAR 250 (382)
T ss_pred ceeEEEEeCCHHHHHHHH-------------------------HHHHccC---CCC-CHH---HH--HHHHcccchHHHH
Confidence 125776664 34433330 0000101 111 122 11 2344455566666
Q ss_pred HHHHHHHHHHHHHHHhcCCCeE
Q 001989 447 AQRVHGLAGTFALGLKKLGTVE 468 (985)
Q Consensus 447 ~~~~~~~a~~l~~~L~~~g~~~ 468 (985)
.++..+++..+.+.|++.+.++
T Consensus 251 ~~~~~~na~~~a~~L~~~p~v~ 272 (382)
T TIGR02080 251 MRLQQRNAQAIVEYLQTQPLVK 272 (382)
T ss_pred HHHHHHHHHHHHHHHHhCCCee
Confidence 7788899999999999875455
|
This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine. |
| >PRK15399 lysine decarboxylase LdcC; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=4.4e-13 Score=160.88 Aligned_cols=297 Identities=13% Similarity=0.078 Sum_probs=190.8
Q ss_pred HHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcCCCC-
Q 001989 634 FNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAK- 712 (985)
Q Consensus 634 ~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~d~~- 712 (985)
+.+.|+.+|++||.+...|..|++|+++.++++++. .+||+||++++.|-+....+.+.|+.++++++..+
T Consensus 197 i~eAe~~aA~~fgAd~tyfvvNGTS~~n~av~~a~~--------~~Gd~VLvdRN~HKSv~~aLilsga~PVYl~P~~n~ 268 (713)
T PRK15399 197 HLEAEEYIARTFGAEQSYIVTNGTSTSNKIVGMYAA--------PAGSTLLIDRNCHKSLAHLLMMSDVVPIWLKPTRNA 268 (713)
T ss_pred HHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHhc--------CCCCEEEeecccHHHHHHHHHHcCCeeEEecccccc
Confidence 678999999999999988888888888877777653 47899999999999888888999999999976432
Q ss_pred ----CCCCH-----HHHHHHHHhcCC--CEEEEEEEcCCCccccccCHHHHHHHHHHcCCEE-EEEccccccccCCCC--
Q 001989 713 ----GNINI-----EELRKAAEANRD--NLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQV-YMDGANMNAQVGLTS-- 778 (985)
Q Consensus 713 ----g~iD~-----e~L~~~i~~~~~--~t~~Vvv~~pn~~G~i~~di~eI~~la~~~gall-iVD~a~~~~~~~l~~-- 778 (985)
|.++. +.++++|+++++ +.+++++++|++.|++. |+++|.++| |+.+ +||+||. +...|..
T Consensus 269 ~Gi~g~I~~~~~~~e~I~~~i~~~p~~~~p~~vvit~pTYdGi~y-d~~~I~~~~---g~~~ilvDEAhg-ah~~F~p~~ 343 (713)
T PRK15399 269 LGILGGIPRREFTRDSIEEKVAATTQAQWPVHAVITNSTYDGLLY-NTDWIKQTL---DVPSIHFDSAWV-PYTHFHPIY 343 (713)
T ss_pred cCCcCCCChhhccHHHHHHHHHhCCCcCCceEEEEECCCCCceee-CHHHHHHHh---CCCEEEEeccch-hhhhcCccc
Confidence 45666 999999986532 22689999999999998 999999998 6666 7999983 2222211
Q ss_pred C--C--cc--CCcEE---EeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhh
Q 001989 779 P--G--YI--GADVC---HLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGS 849 (985)
Q Consensus 779 p--g--~~--g~Di~---~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~ 849 (985)
+ . .. ++|.+ +.|.||+++. --...+|-++.. +....+- . ........|..|..
T Consensus 344 ~~~sam~~~~~aD~~i~~tQStHKtL~a-----lTQaS~iHvk~~----vd~~~~n-------~--a~~m~~STSPsY~L 405 (713)
T PRK15399 344 QGKSGMSGERVPGKVIFETQSTHKMLAA-----FSQASLIHIKGE----YDEETFN-------E--AFMMHTSTSPSYPI 405 (713)
T ss_pred CCcChhhCCCCCCeeeeeeeehhccccc-----cchheeeeecCC----CCHHHHH-------H--HHHHHcCCCcHHHH
Confidence 1 1 11 57887 9999999852 124455544332 1100000 0 00000111222333
Q ss_pred hHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc--c------CCeeec-------------CCC----------
Q 001989 850 ALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK--H------YPILFR-------------GVN---------- 898 (985)
Q Consensus 850 ~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~--g------~~l~~~-------------~~~---------- 898 (985)
.+.+-.|.+.|+. ..| ++..++..+.+..++++|.+ + +++..+ +..
T Consensus 406 mASLD~a~~~m~~--~~G-~~l~~~~i~~a~~fR~~l~~~~~~~~~w~f~~~~~~~~~~~~~w~l~p~~~whgf~~~~~~ 482 (713)
T PRK15399 406 VASVETAAAMLRG--NPG-KRLINRSVERALHFRKEVQRLREESDGWFFDIWQPENVDEAECWPVAPGEQWHGFKDADAD 482 (713)
T ss_pred HHHHHHHHHHHHh--hhh-HHHHHHHHHHHHHHHHHHHhccccccCceeeecCccccCCccceecCCCcccccccccccc
Confidence 3333333334432 233 23455667777777877754 2 222110 000
Q ss_pred ----CceeeEEEEEecCcc-----ccCCCCHHHHHHHHHHCCCccCCCCCCCCCEEEEeccCCCCHHHHHHHHccCChhH
Q 001989 899 ----GTVAHEFIVDLRGLK-----NTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKSWTGIVMLSSPSEK 969 (985)
Q Consensus 899 ----~~~~~~~iv~~~~~~-----~~~g~~~~~v~~~L~~~Gi~~~~~~~p~~~~lris~t~~~t~eeId~~~~~~~l~~ 969 (985)
++. -+.+..+++. ...|+++..+.+.|.++||.+-... ...+.+.++...|++++++ +++.|.+
T Consensus 483 ~~~lDP~--KltI~t~g~~~~g~~~~~Gi~g~~l~~~L~e~gI~~E~~d---~~~vL~l~s~g~t~~~~~~--L~~aL~~ 555 (713)
T PRK15399 483 HMFLDPV--KVTILTPGMDEQGNMSEEGIPAALVAKFLDERGIVVEKTG---PYNLLFLFSIGIDKTKAMG--LLRGLTE 555 (713)
T ss_pred cccCCCc--eEEEEecCcccccccccCCCCHHHHHHHHHHcCCEEEecC---CCeEEEEeCCCCCHHHHHH--HHHHHHH
Confidence 111 1233333220 1247889999999999999875433 3688888999999999999 6666666
Q ss_pred HH
Q 001989 970 KL 971 (985)
Q Consensus 970 ~~ 971 (985)
+-
T Consensus 556 f~ 557 (713)
T PRK15399 556 FK 557 (713)
T ss_pred HH
Confidence 53
|
|
| >PLN02271 serine hydroxymethyltransferase | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.8e-13 Score=158.25 Aligned_cols=292 Identities=12% Similarity=0.028 Sum_probs=188.2
Q ss_pred HHHHHHHHhcCCCC----cceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHH-----HhhcCCCeEEEE
Q 001989 215 NFQTMIADLTGLPM----SNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICI-----TRADGFDIKVVV 285 (985)
Q Consensus 215 e~q~~ia~L~g~~~----~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~-----~~a~~~gi~v~~ 285 (985)
-+++...+|+|++. +|+-.+ +|+.+..++.+|+ +. +||+|+..+..|........ ..+...|+.+..
T Consensus 198 la~era~~lF~~~~~~~gaNVQp~-SGs~AN~aV~~AL-l~--PGD~IL~ldl~~GGHlshg~~~~~g~~vs~sG~~~~~ 273 (586)
T PLN02271 198 LCCERALAAFGLDSEKWGVNVQPY-SCTSANFAVYTGL-LL--PGDRIMGLDSPSGGHMSHGYYTPGGKKVSGASIFFES 273 (586)
T ss_pred HHHHHHHHHhCCcccccccceeec-cHHHHHHHHHHHh-cC--CCCEEEEecCCCCCchhcccccccccccccccceEEE
Confidence 34577889999887 677777 5666677777776 33 99999999988876554321 112234544443
Q ss_pred e-----------Cchhhhc--cCCCEeEEEEEcCCCCeeeccHHHHHHHHHhCCcEEEEEecCccccCC-----CCCCcc
Q 001989 286 S-----------DLKDIDY--KSGDVCGVLVQYPGTEGEVLDYGDFIKNAHANGVKVVMATDLLALTIL-----KPPGEL 347 (985)
Q Consensus 286 v-----------~~~~l~~--l~~~t~~V~v~~pn~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l-----~~~~~~ 347 (985)
+ |++++++ ...++++|++....+. ...|+++|.++|+++|++++||+ .+..|++ ..|..
T Consensus 274 vpY~~d~~~g~IDyd~lek~a~~~rPKLII~g~Sayp-r~~D~~~i~eIAdevGA~LmvD~-AH~aGLIa~g~~~sP~~- 350 (586)
T PLN02271 274 LPYKVNPQTGYIDYDKLEEKALDFRPKILICGGSSYP-REWDYARFRQIADKCGAVLMCDM-AHISGLVAAKECVNPFD- 350 (586)
T ss_pred EEcccccccCccCHHHHHHHhhhcCCeEEEECchhcc-CcCCHHHHHHHHHHcCCEEEEEC-cccccccccCcCCCCCc-
Confidence 3 3355665 4678999988765444 66799999999999999999943 3344544 23333
Q ss_pred cceEEEecC-ccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHH
Q 001989 348 GADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQAL 426 (985)
Q Consensus 348 GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l 426 (985)
+|||+++++ |+|.+|. .|+++++++....+.|...+|+.+.. .+.+.-.+. +.-.-..+.|+.| ..+
T Consensus 351 ~aDvvt~TTHKtLrGPr------GG~I~~r~~~~~~~~g~~gs~s~~~~-~~d~~~kI~-~aVfPglqgGphn----~~I 418 (586)
T PLN02271 351 YCDIVTSTTHKSLRGPR------GGIIFYRKGPKLRKQGMLLSHGDDNS-HYDFEEKIN-FAVFPSLQGGPHN----NHI 418 (586)
T ss_pred CCcEEEeCCcccCCCCC------ceEEEecccccccccCCccccccccc-cHHHHHHhh-cccCCccccChhH----HHH
Confidence 699999999 8886654 36788887766656666656542210 000000000 0000012233333 345
Q ss_pred HHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCC-CCcceEEEecCC----HHHHHHHHHHcCceeee
Q 001989 427 LANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGL-PFFDTVKVKCAD----AHAIASAAYKIEMNLRV 501 (985)
Q Consensus 427 ~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~-~~~~~~~~~~~~----~~~v~~~L~~~GI~~~~ 501 (985)
.|++.++ .......+++-+++..+||+.|++.|.+.| ++++.. ..-+.+.++... +..+.+.|.+.||.+..
T Consensus 419 AalAval--kea~~~efk~Ya~QVv~NAkaLA~~L~~~G-~~vv~ggTdnHlvLvDl~~~g~~G~~ae~~Le~~~I~~Nk 495 (586)
T PLN02271 419 AALAIAL--KQVATPEYKAYMQQVKKNAQALASALLRRK-CRLVTGGTDNHLLLWDLTTLGLTGKNYEKVCEMCHITLNK 495 (586)
T ss_pred HHHHHHH--HHHhChHHHHHHHHHHHHHHHHHHHHHHCC-CeEeeCCCCcceeeecCcccCCCHHHHHHHHHHcCeEecc
Confidence 5665555 333344568899999999999999999998 999843 333456666542 67777888888997632
Q ss_pred ---------ecCCeEEEEeccCCCH----HHHHHHHHHHh
Q 001989 502 ---------VDSNTVTASFDETTTL----EDVDKLFIVFA 528 (985)
Q Consensus 502 ---------~~~~~lris~t~~~t~----edId~li~aL~ 528 (985)
..++.+|+...+.+++ +|++.+.+.+.
T Consensus 496 n~iP~d~~~~~psGiRiGT~alT~rG~~e~d~~~iA~~i~ 535 (586)
T PLN02271 496 TAIFGDNGTISPGGVRIGTPAMTSRGCLESDFETIADFLL 535 (586)
T ss_pred ccCCCCCCCCCCCcccccCHHHHhcCCCcHHHHHHHHHHH
Confidence 2357799998887664 77777666655
|
|
| >PRK05939 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=7.5e-13 Score=152.90 Aligned_cols=227 Identities=19% Similarity=0.146 Sum_probs=150.2
Q ss_pred HHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc---h
Q 001989 213 LLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL---K 289 (985)
Q Consensus 213 i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~---~ 289 (985)
..++++.+|+|.|.+. +.++.+|++++.++++++ + ++||+||+++..|+++...+.. ++..|++++++|. +
T Consensus 49 ~~~lE~~la~leg~~~--~v~~ssG~~Ai~~~l~al-l--~~Gd~Vv~~~~~y~~t~~~~~~-l~~~G~~v~~v~~~d~e 122 (397)
T PRK05939 49 TAALEAKITKMEGGVG--TVCFATGMAAIAAVFLTL-L--RAGDHLVSSQFLFGNTNSLFGT-LRGLGVEVTMVDATDVQ 122 (397)
T ss_pred HHHHHHHHHHHhCCCe--EEEeCCHHHHHHHHHHHH-c--CCCCEEEECCCccccHHHHHHH-HHhcCCEEEEECCCCHH
Confidence 4557789999999876 567778888888777665 3 3899999999999888776655 3468999999875 4
Q ss_pred hhhc-cCCCEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCCCCCcccceEEEecC-ccccccCCCC
Q 001989 290 DIDY-KSGDVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKPPGELGADIVVGSA-QRFGVPMGYG 366 (985)
Q Consensus 290 ~l~~-l~~~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~~~~~~GaDi~v~s~-k~lg~P~~~G 366 (985)
++++ ++++|++|++.+| |.+|.+.|+++|+++||++|++++||. .++.+....|.++|+|+++.|. |.|+++ |
T Consensus 123 ~l~~~l~~~tklV~vesp~NptG~v~dl~~I~~la~~~gi~livD~-t~a~~~~~~~~~~gaDivv~S~sK~~~g~---g 198 (397)
T PRK05939 123 NVAAAIRPNTRMVFVETIANPGTQVADLAGIGALCRERGLLYVVDN-TMTSPWLFRPKDVGASLVINSLSKYIAGH---G 198 (397)
T ss_pred HHHHhCCCCCeEEEEECCCCCCCCHHhHHHHHHHHHHcCCEEEEEC-CcccccccCccccCCEEEEecCeecccCC---C
Confidence 5666 8889999999987 889999999999999999999999953 4444555567889999999998 777642 2
Q ss_pred CCcEEEEEEchhhHhcCCCceeeeeecCCCCcceee--eccccccccc----ccccCCCccchhHHHHHHHHHHHHHhCc
Q 001989 367 GPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRV--AMQTREQHIR----RDKATSNICTAQALLANMAAMYAVYHGP 440 (985)
Q Consensus 367 GP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l--~l~tre~~ir----re~atsni~t~~~l~a~~aa~~l~~~g~ 440 (985)
. .+|.+.+.....+ ..||... ...|.. ..+.--..+| +..|.. .++ -..|+...|.
T Consensus 199 ~-~igg~v~~~~~~~-----~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~G~~----~~p-----~~a~l~~rgl 260 (397)
T PRK05939 199 N-ALGGAVTDTGLFD-----WSAYPNI---FPAYRKGDPQQWGLTQIRKKGLRDMGAT----LSS-----EAAHRIAIGA 260 (397)
T ss_pred C-eEEEEEecCcccc-----cccccch---hhhhhccchhhHHHHHHHHHHHHhcCCC----CCH-----HHHHHHHcCc
Confidence 2 2233333211110 0111000 000000 0000000111 111110 011 1124566777
Q ss_pred chHHHHHHHHHHHHHHHHHHHhcCCCe
Q 001989 441 EGLKTIAQRVHGLAGTFALGLKKLGTV 467 (985)
Q Consensus 441 ~Gl~~i~~~~~~~a~~l~~~L~~~g~~ 467 (985)
+-+..+.+++.+++..+++.|++.+.+
T Consensus 261 ~tl~~R~~~~~~na~~la~~L~~~p~V 287 (397)
T PRK05939 261 ETLALRVDRSCSNALALAQFLEAHPKV 287 (397)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 778888888899999999999987534
|
|
| >TIGR00474 selA seryl-tRNA(sec) selenium transferase | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.7e-13 Score=157.90 Aligned_cols=165 Identities=23% Similarity=0.275 Sum_probs=122.0
Q ss_pred HHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCc----c--cHHHHHHCCcEEEEE
Q 001989 634 FNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHG----T--NPATAAMCGMKIVSV 707 (985)
Q Consensus 634 ~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg----~--~~~~a~~~G~~vv~v 707 (985)
+.++++.+++++|.+.+. .+++|+.|+..++.+ + .++++||+++..|. + .+..++..|++++++
T Consensus 124 ~~~le~~lA~l~gae~al-vv~sg~aAi~l~l~~---l------~~GdeVIvs~~e~v~~ggs~~i~~~~~~~G~~~~~v 193 (454)
T TIGR00474 124 YSHVEGLLCELTGAEDAL-VVNNNAAAVLLALNT---L------AKGKEVIVSRGELVEIGGSFRIPDVMEQSGAKLVEV 193 (454)
T ss_pred HHHHHHHHHHHhCCCcEE-EECCHHHHHHHHHHH---h------CCcCEEEECCChhhhhcchhhHHHHHHHcCCEEEEe
Confidence 568899999999998754 466787766433322 1 36789999886542 1 234456789999999
Q ss_pred cCCCCCCCCHHHHHHHHHhcCCCEEEEEEEcCC-C--ccc--cccCHHHHHHHHHHcCCEEEEEccccc----c-cc--C
Q 001989 708 GTDAKGNINIEELRKAAEANRDNLSTLMVTYPS-T--HGV--YEEGIDEICKIIHDNGGQVYMDGANMN----A-QV--G 775 (985)
Q Consensus 708 ~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~pn-~--~G~--i~~di~eI~~la~~~galliVD~a~~~----~-~~--~ 775 (985)
+.+ +..|+++++++|+ ++|++|++++++ + .|. +. |+++|+++||++|++++||.+... + ++ .
T Consensus 194 ~~~--~~~~l~dle~aI~---~~T~lv~~~h~sN~~~~G~~~~~-dl~~I~~la~~~g~~vivD~~sG~l~~~~~~gl~~ 267 (454)
T TIGR00474 194 GTT--NRTHLKDYEDAIT---ENTALLLKVHTSNYRIVGFTEEV-SIAELVALGREHGLPVMEDLGSGSLVDLSRYGLPD 267 (454)
T ss_pred CCC--CCCCHHHHHHhcC---cCCEEEEEEccCcccccCCCCCC-CHHHHHHHHHHcCCeEEEECCCcccccchhccCCC
Confidence 864 3468999999998 899999998874 3 463 44 899999999999999999965210 0 00 0
Q ss_pred ---CCCCCccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCC
Q 001989 776 ---LTSPGYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLP 820 (985)
Q Consensus 776 ---l~~pg~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp 820 (985)
+..+.++|+|++++|+||+| |||.+|++++++++.+.+.
T Consensus 268 ~p~~~~~~~~GaDiv~fSg~K~L------gGp~~G~i~g~~~~i~~l~ 309 (454)
T TIGR00474 268 EPTVQEVIAAGVDLVTFSGDKLL------GGPQAGIIVGKKELIERLK 309 (454)
T ss_pred CcccccHhHcCCCEEEecCcccc------CCCeEEEEEECHHHHHhhh
Confidence 12345689999999999998 5788899999987766554
|
In bacteria, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes SelA. This model excludes homologs that appear to differ in function from Frankia alni, Helicobacter pylori, Methanococcus jannaschii and other archaea, and so on. |
| >PRK08175 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.56 E-value=8e-13 Score=153.46 Aligned_cols=303 Identities=13% Similarity=0.112 Sum_probs=182.6
Q ss_pred hhhHHHHHHHHHHHHHHHhCCC--cc-ceecCcHHH-HHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCc
Q 001989 627 AQGYQEMFNNLGEWLCTITGFD--SF-SLQPNAGAA-GEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGM 702 (985)
Q Consensus 627 ~~G~~~~~~e~~~~la~l~G~~--~~-~~~~~sGa~-a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~ 702 (985)
.+|..++.+.+.+++.+.+|.. .. ++..++|++ +.. ++++.+ ..++++|+++++.|+.+...++..|+
T Consensus 66 ~~G~~~lr~aia~~~~~~~g~~~~~~~~i~~t~G~~~~l~---~~~~~~-----~~~gd~Vlv~~P~y~~~~~~~~~~g~ 137 (395)
T PRK08175 66 SRGIPRLRRAISRWYQDRYDVDIDPESEAIVTIGSKEGLA---HLMLAT-----LDHGDTVLVPNPSYPIHIYGAVIAGA 137 (395)
T ss_pred CCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEccCcHHHHH---HHHHHh-----CCCCCEEEEcCCCCcchHHHHHHcCC
Confidence 3676666666666666655653 33 455555654 432 222322 14789999999888877777788999
Q ss_pred EEEEEcCCCCCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccCH---HHHHHHHHHcCCEEEEEccccccc-cCCC
Q 001989 703 KIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGI---DEICKIIHDNGGQVYMDGANMNAQ-VGLT 777 (985)
Q Consensus 703 ~vv~v~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~di---~eI~~la~~~galliVD~a~~~~~-~~l~ 777 (985)
+++.+|.++++ .++++++++++...+++++|++++| |++|.+. +. ++|.++|+++|+++++|.++..-. .+..
T Consensus 138 ~~~~v~~~~~~-~~~~~l~~~l~~~~~~~~~v~i~~p~NPtG~~~-~~~~~~~i~~~a~~~~i~ii~De~y~~l~~~~~~ 215 (395)
T PRK08175 138 QVRSVPLVEGV-DFFNELERAIRESYPKPKMMILGFPSNPTAQCV-ELEFFEKVVALAKRYDVLVVHDLAYADIVYDGWK 215 (395)
T ss_pred eEEEEecccCC-CcHHHHHHHHhhccCCceEEEEeCCCCCCCCCC-CHHHHHHHHHHHHHcCcEEEEecchHhhccCCCC
Confidence 99999987543 3589999988744457899999988 5799886 44 899999999999999999873211 1100
Q ss_pred --C----CCccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhH
Q 001989 778 --S----PGYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSAL 851 (985)
Q Consensus 778 --~----pg~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~ 851 (985)
. ++..+..+++.|+.|.|+.| |.++|+++.++++.+.+.... .....+.++ .
T Consensus 216 ~~~~~~~~~~~~~~i~~~S~SK~~g~p----GlRiG~~~~~~~l~~~~~~~~------------~~~~~~~~~------~ 273 (395)
T PRK08175 216 APSIMQVPGAKDVAVEFFTLSKSYNMA----GWRIGFMVGNPELVSALARIK------------SYHDYGTFT------P 273 (395)
T ss_pred CcchhcCCCcccCEEEEeeccccccCc----chhheeeeCCHHHHHHHHHHH------------hhcccCCCc------H
Confidence 0 11112235678888988543 667999998877665432100 000001111 1
Q ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHH-H
Q 001989 852 ILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLM-D 929 (985)
Q Consensus 852 ~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~-~ 929 (985)
...++...+.. ..+-+++..+...++.+++.+.|++ ++.+ ..+.+..+ +.++++.. ....+..+++.+|. +
T Consensus 274 ~q~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~--~~p~~g~~--i~i~l~~~--~~~~~~~~~~~~l~~~ 346 (395)
T PRK08175 274 LQVAAIAALEG-DQQCVRDIAEQYKRRRDVLVKGLHEAGWMV--EMPKASMY--VWAKIPEP--YAAMGSLEFAKKLLNE 346 (395)
T ss_pred HHHHHHHHHhC-cHHHHHHHHHHHHHHHHHHHHHHHHcCCcc--cCCCEEEE--EEEECCcc--cCCCCHHHHHHHHHHh
Confidence 11111222221 2233455555567778888888876 4332 12222222 34555410 00124678888765 5
Q ss_pred CCCccCCC-CCC--CCCEEEEeccCCCCHHHHHHHHccCChhHHHH
Q 001989 930 YGFHGPTM-SWP--VPGTLMIEPTESESKSWTGIVMLSSPSEKKLH 972 (985)
Q Consensus 930 ~Gi~~~~~-~~p--~~~~lris~t~~~t~eeId~~~~~~~l~~~~~ 972 (985)
+||.+... .|+ -++.+||++. .+.+++.. .++.|.+++.
T Consensus 347 ~gv~v~p~~~f~~~~~~~lRis~~--~~~~~~~~--al~~l~~~l~ 388 (395)
T PRK08175 347 AKVCVSPGIGFGDYGDTHVRFALI--ENRDRIRQ--AIRGIKAMFR 388 (395)
T ss_pred CCEEEeCchhhCcCCCCeEEEEeC--CCHHHHHH--HHHHHHHHHH
Confidence 79986542 232 2468999985 46788877 5566666664
|
|
| >KOG1360 consensus 5-aminolevulinate synthase [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.1e-13 Score=148.97 Aligned_cols=287 Identities=14% Similarity=0.181 Sum_probs=183.0
Q ss_pred HHHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHH----HHHCCcEEEEEc
Q 001989 633 MFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPAT----AAMCGMKIVSVG 708 (985)
Q Consensus 633 ~~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~----a~~~G~~vv~v~ 708 (985)
-..++++.||+|.+-+.+.+ ++|.--|+.+.|..+... -|+- +|.++. .|+++ .+-.++.-..+.
T Consensus 217 ~hv~LE~eLA~LHqK~aALl-FsSCfVANDstLftLak~------lpgc-ei~SD~---gNHASMI~GIrns~v~K~IFr 285 (570)
T KOG1360|consen 217 HHVRLEAELADLHQKEAALL-FSSCFVANDSTLFTLAKK------LPGC-EIFSDE---GNHASMIQGIRNSRVPKHIFR 285 (570)
T ss_pred hhhhHHHHHHHHhcCcceee-eeeeeeccchHHHHHHHH------CCCc-EEeccc---cchHHHHHHhhhcCCcceeec
Confidence 34578999999998776532 223333343444433221 1454 444543 33333 234555544455
Q ss_pred CCCCCCCCHHHHHHHHHhcCCC-EEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCC------CCCC
Q 001989 709 TDAKGNINIEELRKAAEANRDN-LSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGL------TSPG 780 (985)
Q Consensus 709 ~d~~g~iD~e~L~~~i~~~~~~-t~~Vvv~~p-n~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l------~~pg 780 (985)
. .|+++|++++...++. .+.|.++.. +..|.+- ||+||++++|+||++..+|++|++++-|- .++|
T Consensus 286 H-----ND~~hL~~lL~~~~~svPKivAFEtVhSM~Gavc-pleelcDvah~yGAiTFlDEVHAVGlYG~rGaGvgerdG 359 (570)
T KOG1360|consen 286 H-----NDLDHLEQLLQSSPKSVPKIVAFETVHSMDGAVC-PLEELCDVAHKYGAITFLDEVHAVGLYGPRGAGVGERDG 359 (570)
T ss_pred c-----CCHHHHHHHHHhCCCCCCceEEEeeeeccCCCcC-CHHHHHHHHHHhCceeeeehhhhhccccCCCCCccccCC
Confidence 5 4999999999865443 566667665 5689998 89999999999999999999997655331 1122
Q ss_pred cc-CCcEEEeCCcccccccCCCCCCceEEEEEcccccCc----CCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHH
Q 001989 781 YI-GADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPF----LPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPI 855 (985)
Q Consensus 781 ~~-g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~----lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~ 855 (985)
-+ ..||+++.+.|.|+. -+|+|+....+++. .+|.+|. |+ . .+..++.
T Consensus 360 vm~kvDiIsGTLgKafGc-------VGGYIAat~~LvDmiRSyAaGFIFT-------------TS-L------PP~vl~G 412 (570)
T KOG1360|consen 360 VMHKVDIISGTLGKAFGC-------VGGYIAATRKLVDMIRSYAAGFIFT-------------TS-L------PPMVLAG 412 (570)
T ss_pred cchhhhhcccchhhhccc-------ccceehhhhhHHHHHHHhcCceEEe-------------cC-C------ChHHHHh
Confidence 11 379999988888743 34799888766543 3444431 11 1 1112233
Q ss_pred HHHHHHHhc-HHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHH-CCC
Q 001989 856 SYTYIAMMG-SKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMD-YGF 932 (985)
Q Consensus 856 a~a~l~~lg-~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~-~Gi 932 (985)
|....+.+. .||. ...++...+..|+++.|.+ |+.++.. + .|.+.+.+.. ..-..++++.|.. .||
T Consensus 413 AleaVr~lk~~eg~-~lR~~hqrnv~~~kq~l~~~GiPVi~~-p----SHIiPv~vgd-----a~l~~~~sd~Li~~h~i 481 (570)
T KOG1360|consen 413 ALEAVRILKSEEGR-VLRRQHQRNVKYVKQLLMELGIPVIPN-P----SHIIPVRVGD-----AALAKQASDILISKHNI 481 (570)
T ss_pred HHHHHHHHhhhhhH-HHHHHHHHHHHHHHHHHHHcCCcccCC-C----cceeeeeccC-----HHHHHHHHHHHHHhcCe
Confidence 444445443 3453 3445677888999999987 7776532 1 3444444421 1224567777765 599
Q ss_pred ccCCCCCC-C---CCEEEEeccCCCCHHHHHHHHccCChhHHHHhhcc
Q 001989 933 HGPTMSWP-V---PGTLMIEPTESESKSWTGIVMLSSPSEKKLHRLKM 976 (985)
Q Consensus 933 ~~~~~~~p-~---~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~~~ 976 (985)
++-.+.|| + ...|||.||..+|.+-++. +++.+..+++++.-
T Consensus 482 YvQaINyPTV~rG~E~LRiaPTP~HT~~mm~~--lv~~l~~vw~~v~l 527 (570)
T KOG1360|consen 482 YVQAINYPTVARGTERLRIAPTPHHTPQMMNI--LVNALLDVWNEVGL 527 (570)
T ss_pred EEEeccCCcccccceeeecCCCCCCCHHHHHH--HHHHHHHHHHHcCC
Confidence 98777777 2 3679999999999999999 88999999887543
|
|
| >cd01494 AAT_I Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes | Back alignment and domain information |
|---|
Probab=99.56 E-value=1e-13 Score=139.93 Aligned_cols=161 Identities=27% Similarity=0.362 Sum_probs=118.2
Q ss_pred HHHHHHHHHHHh--CCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccH-HHHHHCCcEEEEEcCC
Q 001989 634 FNNLGEWLCTIT--GFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNP-ATAAMCGMKIVSVGTD 710 (985)
Q Consensus 634 ~~e~~~~la~l~--G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~-~~a~~~G~~vv~v~~d 710 (985)
+.++++++++++ +.+...+. ++|+.|+..++++++ .++++|++++..|+.+. ..+...|++++.++.+
T Consensus 2 ~~~~~~~l~~~~~~~~~~~~~~-~~~t~a~~~~~~~~~--------~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~v~~~ 72 (170)
T cd01494 2 LEELEEKLARLLQPGNDKAVFV-PSGTGANEAALLALL--------GPGDEVIVDANGHGSRYWVAAELAGAKPVPVPVD 72 (170)
T ss_pred HHHHHHHHHHHcCCCCCcEEEe-CCcHHHHHHHHHHhC--------CCCCEEEEeecccceehhhHHHhcCCEEEEeccC
Confidence 357889999999 54444344 467777765555442 24678999888887777 6778899999999987
Q ss_pred CCCCCCH--HHHHHHHHhcCCCEEEEEEEcCC-CccccccCHHHHHHHHHHcCCEEEEEccccccccCCC--CCCccCCc
Q 001989 711 AKGNINI--EELRKAAEANRDNLSTLMVTYPS-THGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLT--SPGYIGAD 785 (985)
Q Consensus 711 ~~g~iD~--e~L~~~i~~~~~~t~~Vvv~~pn-~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~--~pg~~g~D 785 (985)
+++..+. +.+++... .++++++++++++ ..|... |+++|.++|+++|+++|+|+++........ .+...++|
T Consensus 73 ~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~g~~~-~~~~l~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~d 149 (170)
T cd01494 73 DAGYGGLDVAILEELKA--KPNVALIVITPNTTSGGVLV-PLKEIRKIAKEYGILLLVDAASAGGASPAPGVLIPEGGAD 149 (170)
T ss_pred CCCccchhhhhhhhccc--cCceEEEEEecCcCCCCeEc-CHHHHHHHHHHcCCEEEEecccccccccccccccccccCC
Confidence 6544433 25544332 3688999999885 578777 899999999999999999999853322210 24456799
Q ss_pred EEEeCCcccccccCCCCCCceEEEEEc
Q 001989 786 VCHLNLHKTFCIPHGGGGPGMGPIGVK 812 (985)
Q Consensus 786 i~~~s~hK~l~~p~g~GGPg~G~i~~~ 812 (985)
+++.|+||+| |+|++|++++|
T Consensus 150 ~~~~s~~K~~------~~~~~G~l~~~ 170 (170)
T cd01494 150 VVTFSLHKNL------GGEGGGVVIVK 170 (170)
T ss_pred EEEEEccccc------CCCceEEEEeC
Confidence 9999999998 45899999875
|
PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis |
| >PRK05939 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.2e-13 Score=157.28 Aligned_cols=222 Identities=15% Similarity=0.106 Sum_probs=149.5
Q ss_pred HHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHH---HHHHCCcEEEEEcCC
Q 001989 634 FNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPA---TAAMCGMKIVSVGTD 710 (985)
Q Consensus 634 ~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~---~a~~~G~~vv~v~~d 710 (985)
..++++.++++.|.+.+ +.+++|..|+.+++.++. ++||+||+++..|+.+.. .+...|++++.++.+
T Consensus 49 ~~~lE~~la~leg~~~~-v~~ssG~~Ai~~~l~all--------~~Gd~Vv~~~~~y~~t~~~~~~l~~~G~~v~~v~~~ 119 (397)
T PRK05939 49 TAALEAKITKMEGGVGT-VCFATGMAAIAAVFLTLL--------RAGDHLVSSQFLFGNTNSLFGTLRGLGVEVTMVDAT 119 (397)
T ss_pred HHHHHHHHHHHhCCCeE-EEeCCHHHHHHHHHHHHc--------CCCCEEEECCCccccHHHHHHHHHhcCCEEEEECCC
Confidence 45788999999998764 556678777755554432 478999999887776544 345689999999873
Q ss_pred CCCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCccCCcEEEe
Q 001989 711 AKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIGADVCHL 789 (985)
Q Consensus 711 ~~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~g~Di~~~ 789 (985)
|+++++++++ ++|++|++++| |++|.+. |+++|+++||++|+++++|+++..+ ...+|..+|+|+++.
T Consensus 120 -----d~e~l~~~l~---~~tklV~vesp~NptG~v~-dl~~I~~la~~~gi~livD~t~a~~--~~~~~~~~gaDivv~ 188 (397)
T PRK05939 120 -----DVQNVAAAIR---PNTRMVFVETIANPGTQVA-DLAGIGALCRERGLLYVVDNTMTSP--WLFRPKDVGASLVIN 188 (397)
T ss_pred -----CHHHHHHhCC---CCCeEEEEECCCCCCCCHH-hHHHHHHHHHHcCCEEEEECCcccc--cccCccccCCEEEEe
Confidence 8999999997 89999999998 5799997 8999999999999999999987432 234677889999999
Q ss_pred CCcccccccCCCCCCceEEEEEcccccCc-----CCCCccccC-CCC----CCCCCCCCCCCCCCcchhhhHHHHHHHHH
Q 001989 790 NLHKTFCIPHGGGGPGMGPIGVKKHLAPF-----LPSHPVVST-GGI----PAPEKSQPLGTIAAAPWGSALILPISYTY 859 (985)
Q Consensus 790 s~hK~l~~p~g~GGPg~G~i~~~~~l~~~-----lp~~~~g~~-~~~----~~~~~~~~~~~i~s~~~g~~~~~~~a~a~ 859 (985)
|+||+|+. .|..+|.+++.....+. +...+.... .+. .+......++... ....+|
T Consensus 189 S~sK~~~g----~g~~igg~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~--------~p~~a~-- 254 (397)
T PRK05939 189 SLSKYIAG----HGNALGGAVTDTGLFDWSAYPNIFPAYRKGDPQQWGLTQIRKKGLRDMGATL--------SSEAAH-- 254 (397)
T ss_pred cCeecccC----CCCeEEEEEecCcccccccccchhhhhhccchhhHHHHHHHHHHHHhcCCCC--------CHHHHH--
Confidence 99999963 24444555443221110 000000000 000 0000000111111 112233
Q ss_pred HHHhcHHHHHHHHHHHHHHHHHHHHHhhcc
Q 001989 860 IAMMGSKGLTEASKIAILNANYMAKRLEKH 889 (985)
Q Consensus 860 l~~lg~eGl~~~~~~~~~~a~~l~~~L~~g 889 (985)
+...|.+.+..+.+++.+++..+++.|++.
T Consensus 255 l~~rgl~tl~~R~~~~~~na~~la~~L~~~ 284 (397)
T PRK05939 255 RIAIGAETLALRVDRSCSNALALAQFLEAH 284 (397)
T ss_pred HHHcCcCcHHHHHHHHHHHHHHHHHHHHhC
Confidence 455566778888899999999999999864
|
|
| >cd00615 Orn_deC_like Ornithine decarboxylase family | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.9e-14 Score=158.61 Aligned_cols=212 Identities=18% Similarity=0.212 Sum_probs=139.4
Q ss_pred HHHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc--
Q 001989 211 ESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL-- 288 (985)
Q Consensus 211 ~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~-- 288 (985)
..+.++|+.+|+++|++.+ +.+++|+|.+..++++++ . ++||+|++++.+|+++...+.. .|++++++++
T Consensus 59 g~i~~~~~~~A~~~ga~~~-~~~~~Gst~a~~~~l~al-~--~~gd~Vlv~~~~h~s~~~~~~~----~g~~~~~v~~~~ 130 (294)
T cd00615 59 GPIKEAQELAARAFGAKHT-FFLVNGTSSSNKAVILAV-C--GPGDKILIDRNCHKSVINGLVL----SGAVPVYLKPER 130 (294)
T ss_pred hHHHHHHHHHHHHhCCCCE-EEEcCcHHHHHHHHHHHc-C--CCCCEEEEeCCchHHHHHHHHH----CCCEEEEecCcc
Confidence 4578899999999998753 324688888888877765 2 3899999999999999988763 4667666532
Q ss_pred ------------hhhhc-c--CCCEeEEEEEcCCCCeeeccHHHHHHHHHhCCcEEEEEecCccc-----cCC-CCCCcc
Q 001989 289 ------------KDIDY-K--SGDVCGVLVQYPGTEGEVLDYGDFIKNAHANGVKVVMATDLLAL-----TIL-KPPGEL 347 (985)
Q Consensus 289 ------------~~l~~-l--~~~t~~V~v~~pn~~G~v~di~~I~~~a~~~galliV~a~~~~l-----g~l-~~~~~~ 347 (985)
+++++ + ++++++|++++||++|.+.|+++|+++||++|++++||. .++. +.+ ....++
T Consensus 131 ~~~~~~~~~i~~~~l~~~l~~~~~~k~v~l~~p~~~G~~~dl~~I~~~~~~~g~~livDe-A~~~~~~~~~~~~~~~~~~ 209 (294)
T cd00615 131 NPYYGIAGGIPPETFKKALIEHPDAKAAVITNPTYYGICYNLRKIVEEAHHRGLPVLVDE-AHGAHFRFHPILPSSAAMA 209 (294)
T ss_pred CcccCcCCCCCHHHHHHHHHhCCCceEEEEECCCCCCEecCHHHHHHHHHhcCCeEEEEC-cchhhhccCcccCcchhhc
Confidence 34555 5 357899999999999999999999999999999999942 2321 111 123457
Q ss_pred cceEEEecC-ccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHH
Q 001989 348 GADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQAL 426 (985)
Q Consensus 348 GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l 426 (985)
|+|++++|+ |++++| +++|+++++++.... .+ +. +...+.+.+++++ ..+
T Consensus 210 ~~div~~S~hK~l~g~-----~~~~~l~~~~~~~~~--~~-------------~~------~~~~~~~ttsps~---~~~ 260 (294)
T cd00615 210 GADIVVQSTHKTLPAL-----TQGSMIHVKGDLVNP--DR-------------VN------EALNLHQSTSPSY---LIL 260 (294)
T ss_pred CCcEEEEchhcccchH-----hHHHHHHhCCCcCCH--HH-------------HH------HHHHHHCCCCcHH---HHH
Confidence 999999999 766443 234566665431100 00 00 0000112122222 233
Q ss_pred HHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhc
Q 001989 427 LANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKK 463 (985)
Q Consensus 427 ~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~ 463 (985)
.++.++. .++..+| ++..++..+++++++++|.+
T Consensus 261 asl~~a~--~~~~~~g-~~~~~~~~~~~~~~r~~l~~ 294 (294)
T cd00615 261 ASLDVAR--AMMALEG-KELVEELIELALYARQEINK 294 (294)
T ss_pred HHHHHHH--HHHHHHh-HHHHHHHHHHHHHHHHHHhC
Confidence 3333333 3333445 44677889999999998863
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life. |
| >COG1982 LdcC Arginine/lysine/ornithine decarboxylases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.6e-13 Score=156.52 Aligned_cols=294 Identities=17% Similarity=0.159 Sum_probs=190.2
Q ss_pred HHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcCCCC-
Q 001989 634 FNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAK- 712 (985)
Q Consensus 634 ~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~d~~- 712 (985)
+.|+++..|+.+|.+...|..|+++.|+.++.+++. ++||+||++++.|-++.....+.|+..+++....+
T Consensus 72 i~eAqe~aA~~fgAd~tyFvvNGTS~ank~vi~a~~--------~~GD~VLvdRN~HKSi~~glilaGa~Pvyl~p~~np 143 (557)
T COG1982 72 IKEAQELAARVFGADHTYFVVNGTSTANKAVINAVL--------TPGDKVLVDRNCHKSIHHGLILAGATPVYLEPSRNP 143 (557)
T ss_pred HHHHHHHHHHHhCCCceEEEECCccHHHHHHHHhhc--------CCCCEEEecCCccHHHHHHHHHcCCceEEecCCCCc
Confidence 779999999999999988888988888877766653 48899999999999888888899999998865332
Q ss_pred -----CCCCHHHHHHHHHhcCCCE-EEEEEEcCCCccccccCHHHHHHHHHHcCCEEEEEcccccccc--C-CCCC-Ccc
Q 001989 713 -----GNINIEELRKAAEANRDNL-STLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQV--G-LTSP-GYI 782 (985)
Q Consensus 713 -----g~iD~e~L~~~i~~~~~~t-~~Vvv~~pn~~G~i~~di~eI~~la~~~galliVD~a~~~~~~--~-l~~p-g~~ 782 (985)
|.++.+.+++.+.++ ++. +++++++|++.|+.- ++++|.+.+++.++|+.+|.+|..-.+ . +... .+.
T Consensus 144 ~~gi~ggI~~~~~~~~l~~~-~~~~k~~vitnpTYdGv~~-n~~~i~~~~~~~~a~v~~deah~~~~~~~~~l~~~~~~~ 221 (557)
T COG1982 144 LYGIIGGIPLETFKEALLAH-PDAEKLAVITNPTYDGVCY-NLRKIVELLHHYGAWVLYDEAHPAHFDFSPMLPESALNG 221 (557)
T ss_pred cccccCCCCHHHHHHHHHhC-hhhheeEEEecCccceEee-cHHHHHHHHhhcCceEEhhhcCcccccccccCcchhhhc
Confidence 679999999988765 445 899999999999998 999999999999999999999853221 1 1111 236
Q ss_pred CCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHH
Q 001989 783 GADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAM 862 (985)
Q Consensus 783 g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~ 862 (985)
++|+++.|.||.++ +.-...+|-+++. +.+....+.. . .....+| |..|...+.+-.|...+..
T Consensus 222 ~~~~~tqS~HK~l~-----alSQaS~iHv~~~--~~~~~~r~ne---a--~~~h~ST----SPsY~l~ASlD~Ar~~~~~ 285 (557)
T COG1982 222 GADFVTQSTHKLLA-----ALSQASMIHVKDG--RAVNHERFNE---A--LMMHQST----SPSYPLMASLDVARMQEGN 285 (557)
T ss_pred CceEEEechhhhhh-----hhhhhHHHhhCCC--ccCCHHHHHH---H--HHHHccC----CchHHHHHHHHHHHHhhhh
Confidence 79999999999984 2223344444432 1111000000 0 0000111 2223333333333333333
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHHhhc--cCCeeecCCC-------------------CceeeEEEEEecCccccCCCCHH
Q 001989 863 MGSKGLTEASKIAILNANYMAKRLEK--HYPILFRGVN-------------------GTVAHEFIVDLRGLKNTAGIEPE 921 (985)
Q Consensus 863 lg~eGl~~~~~~~~~~a~~l~~~L~~--g~~l~~~~~~-------------------~~~~~~~iv~~~~~~~~~g~~~~ 921 (985)
-|.+-.++..+...+.++++++...+ ++.+..++.. +|. -+.+..+ ..|+++.
T Consensus 286 ~G~~l~~~~~~~~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~whgf~~~~~~~~~lDP~--Klti~tp----~~Gipg~ 359 (557)
T COG1982 286 AGRELWQEVIDEAIDFRKALRRLINEIGFFPVLQPEKLDPPTGWHGFEDYADDQYFLDPT--KLTITTP----EFGIPGA 359 (557)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhcCCeeeccccccCCcccccccccccccceecccc--EEEEecC----CCCCcHH
Confidence 34333333355566777777776654 3444322210 111 1233332 3589999
Q ss_pred HHHHHHHHCCCccCCCCCCCCCEEEEeccCCCCHHHHHH
Q 001989 922 DVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKSWTGI 960 (985)
Q Consensus 922 ~v~~~L~~~Gi~~~~~~~p~~~~lris~t~~~t~eeId~ 960 (985)
.+++.|.++||..-.+. .....+.+++.+..+..++++
T Consensus 360 ~v~~~L~e~gii~e~~~-d~~~lll~~~~~gk~~~lv~~ 397 (557)
T COG1982 360 IVAKYLREHGIIPEETG-DYSNLLLFSPGIGKWQTLVDR 397 (557)
T ss_pred HHHHHHHHcCCeeeecC-CceeeEEeeeccchHHHHHHH
Confidence 99999999999864332 112456676665566667777
|
|
| >PRK06434 cystathionine gamma-lyase; Validated | Back alignment and domain information |
|---|
Probab=99.55 E-value=8e-13 Score=151.35 Aligned_cols=211 Identities=17% Similarity=0.109 Sum_probs=148.3
Q ss_pred HHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCchhhh
Q 001989 213 LLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDLKDID 292 (985)
Q Consensus 213 i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~~~l~ 292 (985)
+.++++.+|++.|.+. +..+.+|++++.++++++ + ++||+||++...+......+...+...|++++++|.++.+
T Consensus 66 ~~~lE~~la~leg~~~--av~~sSG~aAi~~al~al-l--~~GD~Vl~~~~~yg~t~~~~~~~~~~~Gi~v~fvd~~~~~ 140 (384)
T PRK06434 66 VQAFEEKYAVLENAEH--ALSFSSGMGAITSAILSL-I--KKGKRILSISDLYGQTFYFFNKVLKTLGIHVDYIDTDRLN 140 (384)
T ss_pred HHHHHHHHHHHhCCCc--EEEeCCHHHHHHHHHHHH-h--CCCCEEEEecCccchHHHHHHHHHHhcCcEEEEECCCChh
Confidence 4557789999999875 678899999888887765 3 3899999998877666665555556789999999986544
Q ss_pred c--cCC-CEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCCCCCcccceEEEecC-ccccccCCCCC
Q 001989 293 Y--KSG-DVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKPPGELGADIVVGSA-QRFGVPMGYGG 367 (985)
Q Consensus 293 ~--l~~-~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~~~~~~GaDi~v~s~-k~lg~P~~~GG 367 (985)
. +++ ++++|++.+| |.++.+.|+++|+++||++| ++|| +.++.+....|-.+|+|++++|+ |.+++|-..
T Consensus 141 ~~~l~~~~tklv~~e~~snpt~~v~Di~~I~~la~~~~--lvVD-~t~~s~~~~~pl~~gaDivv~S~tK~i~G~~d~-- 215 (384)
T PRK06434 141 SLDFDPSNYDLIYAESITNPTLKVPDIKNVSSFCHEND--VIVD-ATFASPYNQNPLDLGADVVIHSATKYISGHSDV-- 215 (384)
T ss_pred heeecCCCeeEEEEEcCCCCCceeecHHHHHHHHHHcC--eEEE-CCCCCcccCCchhcCCCEEEeecccccCCCCCc--
Confidence 3 555 6999999987 78999999999999999998 4564 34555556667789999999999 777654211
Q ss_pred CcEEEEEEch-hhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcchHHHH
Q 001989 368 PHAAFLATSQ-EYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTI 446 (985)
Q Consensus 368 P~~G~l~~~~-~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i 446 (985)
-.|.+.+++ ++.+++- ..|+..|.. . ++ ..|+ +...|-+-++.+
T Consensus 216 -~gG~vv~~~~~~~~~~~-------------------------~~~~~~G~~-~---~~---~~A~--l~~~gL~tL~~R 260 (384)
T PRK06434 216 -VMGVAGTNNKSIFNNLV-------------------------ERRKTLGSN-P---DP---IQAY--LALRGLKTLGLR 260 (384)
T ss_pred -eEEEEecCcHHHHHHHH-------------------------HHHHhcCCC-C---CH---HHHH--HHHhCCCcHHHH
Confidence 146666643 3332220 000111100 0 11 2222 345566677888
Q ss_pred HHHHHHHHHHHHHHHhcCCCeE
Q 001989 447 AQRVHGLAGTFALGLKKLGTVE 468 (985)
Q Consensus 447 ~~~~~~~a~~l~~~L~~~g~~~ 468 (985)
.++..+++..+.+.|++.+.++
T Consensus 261 ~~r~~~~a~~~a~~L~~~p~v~ 282 (384)
T PRK06434 261 MEKHNKNGMELARFLRDSKKIS 282 (384)
T ss_pred HHHHHHHHHHHHHHHHcCCCcc
Confidence 8899999999999999875343
|
|
| >PRK06084 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.9e-12 Score=150.76 Aligned_cols=142 Identities=17% Similarity=0.158 Sum_probs=109.9
Q ss_pred HHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCc-ccHHHHH---HCCcEEEEEcCC
Q 001989 635 NNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHG-TNPATAA---MCGMKIVSVGTD 710 (985)
Q Consensus 635 ~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg-~~~~~a~---~~G~~vv~v~~d 710 (985)
.++++.++++.|.+.. +.+++|++|+.+++.++. .++++||++...++ ++..... ..|+++..++.
T Consensus 61 ~~Le~~lA~l~g~~~~-l~~ssG~~Ai~~al~al~--------~~Gd~Vl~~~~~Y~~t~~~~~~~l~~~gi~v~~~d~- 130 (425)
T PRK06084 61 DVLEQRVAALEGGVGA-LAVASGMAAITYAIQTIA--------EAGDNIVSVAKLYGGTYNLLAHTLPRIGIETRFAAH- 130 (425)
T ss_pred HHHHHHHHHHhCCCce-eEehhHHHHHHHHHHHHh--------CCCCEEEEeCCCcchHHHHHHHhcccceeEEEEECC-
Confidence 4788999999997653 556778877755555432 36789998766555 3322222 35778877775
Q ss_pred CCCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCccCCcEEEe
Q 001989 711 AKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIGADVCHL 789 (985)
Q Consensus 711 ~~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~g~Di~~~ 789 (985)
.|+++++++++ ++|++|++++| |++|.+. |+++|+++||++|+++++|+++..+ ....|..+|+|+++.
T Consensus 131 ----~d~e~le~ai~---~~tklV~lesp~NPtG~v~-dl~~I~~la~~~~i~vVvD~a~a~~--~~~~p~~~gaDivv~ 200 (425)
T PRK06084 131 ----DDIAALEALID---ERTKAVFCESIGNPAGNII-DIQALADAAHRHGVPLIVDNTVATP--VLCRPFEHGADIVVH 200 (425)
T ss_pred ----CCHHHHHHHhc---cCCcEEEEeCCCCCCCeec-CHHHHHHHHHHcCCEEEEECCCccc--ccCChhhcCCCEEEE
Confidence 38999999998 78999999998 6799998 8999999999999999999998533 234566789999999
Q ss_pred CCccccc
Q 001989 790 NLHKTFC 796 (985)
Q Consensus 790 s~hK~l~ 796 (985)
|++|+++
T Consensus 201 S~tK~l~ 207 (425)
T PRK06084 201 SLTKYIG 207 (425)
T ss_pred Cchhccc
Confidence 9999995
|
|
| >PRK02610 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=7.9e-13 Score=152.36 Aligned_cols=286 Identities=14% Similarity=0.067 Sum_probs=172.0
Q ss_pred HHHHHHHHHhC--------CCccceecCcHHH-HHHHHHHHHHHHHHhcCCCCC-CEEEEcCCCCcccHHHHHHCCcEEE
Q 001989 636 NLGEWLCTITG--------FDSFSLQPNAGAA-GEYAGLMVIRAYHKARGDHHR-NVCIIPVSAHGTNPATAAMCGMKIV 705 (985)
Q Consensus 636 e~~~~la~l~G--------~~~~~~~~~sGa~-a~~a~l~air~~~~~~g~~~~-~~IIv~~~~Hg~~~~~a~~~G~~vv 705 (985)
++++.+++.++ .+..++..++|++ +...++.++ . .++ ++|+++++.+..+...++..|++++
T Consensus 70 ~Lr~aia~~~~~~~~~~~~v~~~~I~it~Ga~~al~~~~~~~---~-----~~g~~~Vlv~~P~y~~~~~~~~~~g~~~~ 141 (374)
T PRK02610 70 ALKQAIAEYVNESAAGSSQITPANISVGNGSDELIRSLLIAT---C-----LGGEGSILVAEPTFSMYGILAQTLGIPVV 141 (374)
T ss_pred HHHHHHHHHhCccccccCCCCHHHEEEcCChHHHHHHHHHHH---c-----CCCCCeEEEcCCChHHHHHHHHHcCCEEE
Confidence 45566666665 4445566666655 432222221 1 234 3799998877777777889999999
Q ss_pred EEcCCCC-CCCCHHHHHHHHHhc-CCCEEEEEEEcC-CCccccccCHHHHHHHHHH-cCCEEEEEccccccccCCCCCCc
Q 001989 706 SVGTDAK-GNINIEELRKAAEAN-RDNLSTLMVTYP-STHGVYEEGIDEICKIIHD-NGGQVYMDGANMNAQVGLTSPGY 781 (985)
Q Consensus 706 ~v~~d~~-g~iD~e~L~~~i~~~-~~~t~~Vvv~~p-n~~G~i~~di~eI~~la~~-~galliVD~a~~~~~~~l~~pg~ 781 (985)
.++.+++ +.+|+++|++++++. .+++++|++++| |++|.+. +.+++.++++- +|+++++|.++.. +.....+..
T Consensus 142 ~~~~~~~~~~~d~~~l~~~~~~~~~~~~k~i~l~~P~NPTG~~~-s~~~l~~l~~~~~~~~iI~De~Y~~-~~~~~~~~~ 219 (374)
T PRK02610 142 RVGRDPETFEIDLAAAQSAIEQTQNPPVRVVFVVHPNSPTGNPL-TAAELEWLRSLPEDILVVIDEAYFE-FSQTTLVGE 219 (374)
T ss_pred EecCCcccCCCCHHHHHHHHHhhcCCCceEEEEeCCCCCCCCCC-CHHHHHHHHhccCCcEEEEeccccc-cCccchHHH
Confidence 9998653 689999999998631 137899999999 4799997 55555555431 4899999998732 111101110
Q ss_pred --cCC-cEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHH
Q 001989 782 --IGA-DVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYT 858 (985)
Q Consensus 782 --~g~-Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a 858 (985)
... -|++.|+.|+|++| |.++|++++++++.+.+.... ...++++ ..+. ++.+
T Consensus 220 ~~~~~~~ivi~SfSK~~g~~----GlRiG~~v~~~~l~~~l~~~~--------------~~~~~~~--~~q~----a~~~ 275 (374)
T PRK02610 220 LAQHPNWVILRTFSKAFRLA----AHRVGYAIGHPELIAVLEKVR--------------LPYNLPS--FSQL----AAQL 275 (374)
T ss_pred HhcCCCEEEEEecchhccCc----ccceeeeecCHHHHHHHHHhc--------------CCCCCCH--HHHH----HHHH
Confidence 111 26677888888654 789999998877655432110 0011111 1121 1122
Q ss_pred HHHHhcHHHHHHHHHHHHHHHHHHHHHhhccCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCC
Q 001989 859 YIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMS 938 (985)
Q Consensus 859 ~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~ 938 (985)
++. ..+.+.+..++..+.++.+.+.|++...+...++ +..+ +.++++ .+.+..++.+.|.++|+.+...
T Consensus 276 ~l~--~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~p~-~g~f--~~~~l~-----~~~~~~~~~~~l~~~gi~v~~~- 344 (374)
T PRK02610 276 ALE--HRQELLAAIPEILQERDRLYQALQELPQLRVWPS-AANF--LYLRLS-----QDAALAALHQALKAQGTLVRHT- 344 (374)
T ss_pred Hhc--CHHHHHHHHHHHHHHHHHHHHHHHhCCCcEeCCC-cceE--EEEeCC-----CCCCHHHHHHHHHHCCEEEEeC-
Confidence 222 1133333334445556667777765212222222 2222 345554 2356789999999999988532
Q ss_pred CCCCCEEEEeccCCCCHHHHHHHHccCChhHHHHhh
Q 001989 939 WPVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRL 974 (985)
Q Consensus 939 ~p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~ 974 (985)
.+++||++. +.+++++ +++.|++++..+
T Consensus 345 ---~~~lRls~~---~~~~~~~--~l~~l~~~l~~~ 372 (374)
T PRK02610 345 ---GGGLRITIG---TPEENQR--TLERLQAALTQL 372 (374)
T ss_pred ---CCeEEEeCC---CHHHHHH--HHHHHHHHHhhc
Confidence 478999985 4678888 677788777654
|
|
| >PRK06918 4-aminobutyrate aminotransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.5e-12 Score=153.36 Aligned_cols=334 Identities=15% Similarity=0.127 Sum_probs=191.5
Q ss_pred ccccccccCCCccccccccccccccccCCCCchhhhhhHHHHHHHHHHHHHHHhCCC--ccceecCcHHHHHHHHHHHHH
Q 001989 592 IPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFD--SFSLQPNAGAAGEYAGLMVIR 669 (985)
Q Consensus 592 ~~lG~~t~~~~~~~~~~~~~~~~f~~~~p~~p~e~~~G~~~~~~e~~~~la~l~G~~--~~~~~~~sGa~a~~a~l~air 669 (985)
..||++++.+..+...+......... ..+. .+...++.+.|+++++.. ...++.+||++|++++++.+|
T Consensus 66 ~~lGh~~p~v~~ai~~q~~~~~~~~~-~~~~--------~~~~~~la~~L~~~~p~~~~~~v~f~~sGseA~e~AlklAr 136 (451)
T PRK06918 66 INVGHSHPKVKEALHKQVDQYIHTGF-NVMM--------YEPYIELAEKLAALAPGSFDKKVLFLNSGAEAVENAVKIAR 136 (451)
T ss_pred cCCCCCCHHHHHHHHHHHHhccCccc-cccc--------cHHHHHHHHHHHHhCCCCCCCEEEEcCCcHHHHHHHHHHHH
Confidence 45888877777665544322111111 0000 123457788888888532 245788999999999999998
Q ss_pred HHHHhcCCCCCCEEEE-cCCCCcccHHHHHHCCc-------------EEEEEcCCC-----CCCCC-------HHHHHHH
Q 001989 670 AYHKARGDHHRNVCII-PVSAHGTNPATAAMCGM-------------KIVSVGTDA-----KGNIN-------IEELRKA 723 (985)
Q Consensus 670 ~~~~~~g~~~~~~IIv-~~~~Hg~~~~~a~~~G~-------------~vv~v~~d~-----~g~iD-------~e~L~~~ 723 (985)
.|. ++.+||. ...+||....+....|- .+..+|... .+..+ ++.+++.
T Consensus 137 ~~t------gr~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (451)
T PRK06918 137 KYT------KRQGIISFSRGFHGRTLMTMTMTSKVKPYKFGFGPFAPEVYKAPFPYEYRRPEGLTEEQYDDFMIEEFKNF 210 (451)
T ss_pred HHh------CCCcEEEECCCcCccchhhhhhcCCCccccccCCCCCCCcEEcCCCccccccccCchHHHHHHHHHHHHHH
Confidence 862 3455665 66899988665433221 133343311 11111 2234444
Q ss_pred HHh--cCCCEEEEEEEcCC-Ccccccc---CHHHHHHHHHHcCCEEEEEccccccccCCCCC---CccC--CcEEEeCCc
Q 001989 724 AEA--NRDNLSTLMVTYPS-THGVYEE---GIDEICKIIHDNGGQVYMDGANMNAQVGLTSP---GYIG--ADVCHLNLH 792 (985)
Q Consensus 724 i~~--~~~~t~~Vvv~~pn-~~G~i~~---di~eI~~la~~~galliVD~a~~~~~~~l~~p---g~~g--~Di~~~s~h 792 (985)
+.. +.+++++|+++-.. ..|++.+ .+++|.++|+++|+++|.|+++. +++-...+ ..++ +|++++ .
T Consensus 211 ~~~~~~~~~iAavi~EPi~g~gG~~~~~~~~l~~l~~l~~~~gillI~DEV~t-g~gr~g~~~a~~~~~v~pDi~t~--s 287 (451)
T PRK06918 211 FISEVAPETIAAVVMEPVQGEGGFIVPSKKFVQEVRNICSEHGILFVADEIQT-GFARTGKYFAIEHFDVVPDLITV--S 287 (451)
T ss_pred HHhhcCCCceEEEEECcccCCCCCccCCHHHHHHHHHHHHHcCCEEEEecccc-CcCccCceehhHhcCCCCCEEee--e
Confidence 421 23568888876433 3465432 38999999999999999999873 22111111 1233 787754 4
Q ss_pred ccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHHHHHHH
Q 001989 793 KTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEAS 872 (985)
Q Consensus 793 K~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl~~~~ 872 (985)
|.++ +|..+|++++++++.+.+.... . .+++.|+++.++++.+.+..+..+.+.+
T Consensus 288 K~l~-----~G~pig~v~~~~~i~~~~~~~~--------------~----~~T~~g~~l~~aaa~a~l~~i~~~~~~~-- 342 (451)
T PRK06918 288 KSLG-----AGVPISGVIGRKEIMDESAPGE--------------L----GGTYAGSPLGCAAALAVLDIIEKENLND-- 342 (451)
T ss_pred hhhc-----CCCccEEEEEcHHHHhccCCCC--------------c----CcCCCcCHHHHHHHHHHHHHHHHCCHHH--
Confidence 8774 4567889998877765442110 0 1123345666666677777775555443
Q ss_pred HHHHHHHHHHHHHhhcc---CCee--ecCCCCceeeEEEEEecC-ccccCCCCHHHHHHHHHHCCCccCCCCCCCCCEEE
Q 001989 873 KIAILNANYMAKRLEKH---YPIL--FRGVNGTVAHEFIVDLRG-LKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLM 946 (985)
Q Consensus 873 ~~~~~~a~~l~~~L~~g---~~l~--~~~~~~~~~~~~iv~~~~-~~~~~g~~~~~v~~~L~~~Gi~~~~~~~p~~~~lr 946 (985)
+..+..+++.++|++. +++. ..+. +. +..+.+..+. .+.+.......+.+.|.++|+.+.... ...+.+|
T Consensus 343 -~~~~~g~~l~~~l~~l~~~~~~~~~vrg~-G~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Gvlv~~~~-~~~~~lr 418 (451)
T PRK06918 343 -RAIELGKVVMNRFEEMKNKYNCIGDVRGL-GA-MCAFELVQDRKTKEPDKTLTANICKEANKRGLLLLSAG-TYGNVIR 418 (451)
T ss_pred -HHHHHHHHHHHHHHHHHhhCCCceeeccc-ee-EEEEEEccCCCcCCCcHHHHHHHHHHHHHCCeEEeecC-CCCCEEE
Confidence 4455567777777542 2221 1121 22 2112121000 000001124567777889999874322 1137899
Q ss_pred EeccCCCCHHHHHHHHccCChhHHHHhh
Q 001989 947 IEPTESESKSWTGIVMLSSPSEKKLHRL 974 (985)
Q Consensus 947 is~t~~~t~eeId~~~~~~~l~~~~~~~ 974 (985)
++|+...|++|||+ .+++|++.+.++
T Consensus 419 l~p~l~~t~~~id~--~l~~l~~~l~~~ 444 (451)
T PRK06918 419 VLMPLVITDEQLEE--GLTIIEESLQAC 444 (451)
T ss_pred EECCCccCHHHHHH--HHHHHHHHHHHH
Confidence 99999899999999 778888888765
|
|
| >COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.55 E-value=8.6e-13 Score=142.29 Aligned_cols=223 Identities=20% Similarity=0.177 Sum_probs=145.7
Q ss_pred HHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCc-cc---HHHHHHCCcEEEEEcCCC
Q 001989 636 NLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHG-TN---PATAAMCGMKIVSVGTDA 711 (985)
Q Consensus 636 e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg-~~---~~~a~~~G~~vv~v~~d~ 711 (985)
.+++.++.+-|.-.. +...||..|. .+++.... ..||+|+.+..-+| ++ ....+..|+++++|+.+
T Consensus 66 vlE~RiAaLEGG~aa-~a~aSG~AA~---~~ai~~la-----~aGD~iVss~~LYGGT~~lf~~tl~~~Gi~v~fvd~~- 135 (426)
T COG2873 66 VLEERIAALEGGVAA-LAVASGQAAI---TYAILNLA-----GAGDNIVSSSKLYGGTYNLFSHTLKRLGIEVRFVDPD- 135 (426)
T ss_pred HHHHHHHHhhcchhh-hhhccchHHH---HHHHHHhc-----cCCCeeEeeccccCchHHHHHHHHHhcCcEEEEeCCC-
Confidence 567888888765332 3345565544 33343321 37899998665554 33 23357899999999875
Q ss_pred CCCCCHHHHHHHHHhcCCCEEEEEEEc-CCCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCccCCcEEEeC
Q 001989 712 KGNINIEELRKAAEANRDNLSTLMVTY-PSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIGADVCHLN 790 (985)
Q Consensus 712 ~g~iD~e~L~~~i~~~~~~t~~Vvv~~-pn~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~g~Di~~~s 790 (985)
|++.++++|+ ++|++|+++. .|+-+.+. |+++|+++||++|++++||-. ++-.-+.+|-+.|+||++.|
T Consensus 136 ----d~~~~~~aI~---~nTkavf~EtigNP~~~v~-Die~ia~iAh~~gvpliVDNT--~atpyl~rP~~hGADIVvHS 205 (426)
T COG2873 136 ----DPENFEAAID---ENTKAVFAETIGNPGLDVL-DIEAIAEIAHRHGVPLIVDNT--FATPYLCRPIEHGADIVVHS 205 (426)
T ss_pred ----CHHHHHHHhC---cccceEEEEeccCCCcccc-CHHHHHHHHHHcCCcEEEecC--CCcceecchhhcCCCEEEEe
Confidence 8999999999 9999999987 47777776 999999999999999999954 34445789999999999999
Q ss_pred CcccccccCCCCCCceEEEEEcccccCcC-CCCccccC-CCC---C-CC------------CC---CCCCCCCCCcchhh
Q 001989 791 LHKTFCIPHGGGGPGMGPIGVKKHLAPFL-PSHPVVST-GGI---P-AP------------EK---SQPLGTIAAAPWGS 849 (985)
Q Consensus 791 ~hK~l~~p~g~GGPg~G~i~~~~~l~~~l-p~~~~g~~-~~~---~-~~------------~~---~~~~~~i~s~~~g~ 849 (985)
..||++ +.|-.+|-++++-...++. ++++-..+ .+. + .+ .| -+.++...+ +
T Consensus 206 ~TK~ig----GhGt~iGG~iVD~G~FDw~~~~rfP~~~~p~p~YhGl~~~~~~g~~af~~~~r~~~lRDlGa~ls-P--- 277 (426)
T COG2873 206 ATKYIG----GHGTAIGGVIVDGGKFDWTANGRFPEFTTPDPSYHGLVYTETFGNAAFIIKARVQLLRDLGATLS-P--- 277 (426)
T ss_pred eccccc----CCccccceEEEeCCccccccCCCCcccCCCCccccceehhhhcccHHHHHHHHHHHHHhcccccC-c---
Confidence 999984 3455555555553211111 21110000 000 0 00 00 001111111 1
Q ss_pred hHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhccCCe
Q 001989 850 ALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPI 892 (985)
Q Consensus 850 ~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~g~~l 892 (985)
- .+++...|-|-+.-+++++++|+..+++.|+++.+|
T Consensus 278 ----f--nAfl~lqGlETL~LRmerH~~NA~~vA~~L~~HpkV 314 (426)
T COG2873 278 ----F--NAFLLLQGLETLSLRMERHCENALKVAEFLENHPKV 314 (426)
T ss_pred ----H--HHHHHHhchhhhHHHHHHHHHhHHHHHHHHhcCCCe
Confidence 1 234556677888888999999999999999875543
|
|
| >TIGR01365 serC_2 phosphoserine aminotransferase, Methanosarcina type | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.9e-13 Score=153.92 Aligned_cols=305 Identities=11% Similarity=0.017 Sum_probs=190.3
Q ss_pred hhHHHHHHHHHHHHHHHhCCCc---cceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCccc-H-HHHHHCCc
Q 001989 628 QGYQEMFNNLGEWLCTITGFDS---FSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTN-P-ATAAMCGM 702 (985)
Q Consensus 628 ~G~~~~~~e~~~~la~l~G~~~---~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~-~-~~a~~~G~ 702 (985)
+...+++.++++.|.++++.+. +.++.+||+.++++++..+.. .+++++++.. .+|.- . ..++..|+
T Consensus 35 ~~F~~i~~e~~~~L~~l~~~~~~~~v~~l~GsGT~a~Eaa~~nl~~-------~~g~~vLv~g-~FG~r~~~eia~~~g~ 106 (374)
T TIGR01365 35 KLGKEKLAEAIKKTREMLGVPADYLIGIVPASDTGAVEMALWSMLG-------CRGVDVLAWE-SFGKGWVTDVTKQLKL 106 (374)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCcEEEEECCchHHHHHHHHHHcCC-------CCCCeEEEEC-HHHHHHHHHHHHhcCC
Confidence 4567888899999999999753 246678899888877664321 2567788754 33322 3 44667899
Q ss_pred -EEEEEcCCCCCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCC
Q 001989 703 -KIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPG 780 (985)
Q Consensus 703 -~vv~v~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg 780 (985)
++..+..+++..+|+++++. + .+ |.+++. +.+|+.. |+++|++.+ ++++++||++.+ +++..-.-
T Consensus 107 ~~v~~l~~~~g~~~~~~~ve~--~---~~---v~~vhnETSTGv~n-pv~~i~~~~--~~~lliVDavSs--~g~~~l~~ 173 (374)
T TIGR01365 107 PDVRVLEAEYGKLPDLKKVDF--K---ND---VVFTWNGTTSGVRV-PNGDFIPAD--REGLTICDATSA--AFAQDLDY 173 (374)
T ss_pred CCcEEEcCCCCCCCCHHHcCC--C---CC---EEEecCCCchheec-ccccccccc--CCCcEEEEccch--hcCCCCCh
Confidence 58888887777899999873 2 23 445554 5699999 787766432 489999999875 33331111
Q ss_pred ccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCC--CCccccC--CCC-C--C---CCCCCCCCCCCCcchhhh
Q 001989 781 YIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLP--SHPVVST--GGI-P--A---PEKSQPLGTIAAAPWGSA 850 (985)
Q Consensus 781 ~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp--~~~~g~~--~~~-~--~---~~~~~~~~~i~s~~~g~~ 850 (985)
+ ++|+++.+++|+|+.| ||+++++++++.+.... ...+... .+. . . ......+.+++ ..
T Consensus 174 d-~iDv~~tgsQK~L~~p-----pGls~v~vs~~Al~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~t~~TP-----~v 242 (374)
T TIGR01365 174 H-KLDVVTFSWQKVLGGE-----GAHGMLILSPRAVARLESYTPAWPLPKIFRLTKGGKLNKKIFEGSTINTP-----SM 242 (374)
T ss_pred h-HCcEEEEechhccCCC-----CceEEEEECHHHHHHHhhcCCCCCChhhhccccccchhhhhhcCCCCCCh-----HH
Confidence 2 4999999999999643 79999999987654322 1100000 000 0 0 00001122222 11
Q ss_pred HHHHHHHHHHHHhcHH-HHHHHHHHHHHHHHHHHHHhhc-c-CCeeecCCCCceeeEEEEEecCccccCCC-----C---
Q 001989 851 LILPISYTYIAMMGSK-GLTEASKIAILNANYMAKRLEK-H-YPILFRGVNGTVAHEFIVDLRGLKNTAGI-----E--- 919 (985)
Q Consensus 851 ~~~~~a~a~l~~lg~e-Gl~~~~~~~~~~a~~l~~~L~~-g-~~l~~~~~~~~~~~~~iv~~~~~~~~~g~-----~--- 919 (985)
..+.++...|..+..+ |+.++.+++.++++++++.+++ + +.+....+........++.++. .++ +
T Consensus 243 ~~l~a~~~~l~~i~~egGle~~~~Rh~~~a~~l~~~l~~lg~l~~~~~~~~~rS~tvt~v~~~~----~~~~~~~~~~~~ 318 (374)
T TIGR01365 243 LCVEDWLDALKWAESIGGLKPLIARADDNLAVLEAFVAKNNWIHFLAETPEIRSNTSVCLKVVD----PAIDALDEDAQA 318 (374)
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHCCCcccCCCChhhcCCCeEEEEeCC----ccccccccchhh
Confidence 2222233445555565 8999999999999999999997 5 4443211111111113344431 123 2
Q ss_pred --HHHHHHHHHHCCCccCCCCCC-CCCEEEEeccCCCCHHHHHHHHccCChhHH
Q 001989 920 --PEDVAKRLMDYGFHGPTMSWP-VPGTLMIEPTESESKSWTGIVMLSSPSEKK 970 (985)
Q Consensus 920 --~~~v~~~L~~~Gi~~~~~~~p-~~~~lris~t~~~t~eeId~~~~~~~l~~~ 970 (985)
..++.+.|.++||.+..-..+ .+..+||.-.-..+.+||+. +++.|.=+
T Consensus 319 ~~~~~~~~~l~~~gi~i~~G~~~~~~~~fRIg~~G~i~~~di~~--l~~~l~~~ 370 (374)
T TIGR01365 319 DFAKELISTLEKEGVAYDIGSYRDAPSGLRIWCGATVEKSDLEC--LCPWLDWA 370 (374)
T ss_pred HHHHHHHHHHHHCCEEEeccccccCCCceEEecCCcCCHHHHHH--HHHHHHHH
Confidence 678999999999976432222 23789999999999999999 55555433
|
This model represents a variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in a small number of distantly related species, including Caulobacter crescentus, Mesorhizobium loti, and the archaeon Methanosarcina barkeri. |
| >PLN02376 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=99.54 E-value=9e-13 Score=156.46 Aligned_cols=307 Identities=14% Similarity=0.204 Sum_probs=182.6
Q ss_pred hhhHHHHHHHHHHHHHHHhC----CCccceecCcHHH-HHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHH-HC
Q 001989 627 AQGYQEMFNNLGEWLCTITG----FDSFSLQPNAGAA-GEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAA-MC 700 (985)
Q Consensus 627 ~~G~~~~~~e~~~~la~l~G----~~~~~~~~~sGa~-a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~-~~ 700 (985)
.+|..++.+.+.+++.+.+| +++..+..++|++ |.+..+ +.+. .+||.|+++.+.++.+...+. ..
T Consensus 93 ~~G~~~LR~aiA~~l~~~~g~~v~v~pe~Ivit~Ga~~al~~l~---~~l~-----~pGD~Vlv~~P~Y~~~~~~~~~~~ 164 (496)
T PLN02376 93 YHGLKKFRQAIAHFMGKARGGKVTFDPERVVMSGGATGANETIM---FCLA-----DPGDVFLIPSPYYAAFDRDLRWRT 164 (496)
T ss_pred CCCcHHHHHHHHHHHHHHhCCCCcCChhhEEEccchHHHHHHHH---HHhC-----CCCCEEEECCCCccchHHHHHhhC
Confidence 36776777777777777666 4555565555554 443333 3221 478999999998888776666 58
Q ss_pred CcEEEEEcCCC--CCCCCHHHHHHHHHh---cCCCEEEEEEEcC-CCccccc--cCHHHHHHHHHHcCCEEEEEcccccc
Q 001989 701 GMKIVSVGTDA--KGNINIEELRKAAEA---NRDNLSTLMVTYP-STHGVYE--EGIDEICKIIHDNGGQVYMDGANMNA 772 (985)
Q Consensus 701 G~~vv~v~~d~--~g~iD~e~L~~~i~~---~~~~t~~Vvv~~p-n~~G~i~--~di~eI~~la~~~galliVD~a~~~~ 772 (985)
|++++.||++. ++.+|++++++++.+ ...++++|++++| |++|.+. ..+++|.++|+++|+++++|+++...
T Consensus 165 G~~vv~v~~~~~~~~~~~~~~le~a~~~a~~~~~~~k~l~l~nP~NPTG~~~s~e~l~~L~~~a~~~~i~lI~DEiY~~~ 244 (496)
T PLN02376 165 GVEIIPVPCSSSDNFKLTVDAADWAYKKAQESNKKVKGLILTNPSNPLGTMLDKDTLTNLVRFVTRKNIHLVVDEIYAAT 244 (496)
T ss_pred CCEEEEEeCCCCccCcCCHHHHHHHHHHHHhcCCCeeEEEEcCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEEcCcccc
Confidence 99999999853 468999999877532 1247899999999 5799996 24778888999999999999998421
Q ss_pred c-cC--CCC----CCcc-----CCc--EEEeCCcccccccCCCCCCceEEEEEc-ccccCcCCCCccccCCCCCCCCCCC
Q 001989 773 Q-VG--LTS----PGYI-----GAD--VCHLNLHKTFCIPHGGGGPGMGPIGVK-KHLAPFLPSHPVVSTGGIPAPEKSQ 837 (985)
Q Consensus 773 ~-~~--l~~----pg~~-----g~D--i~~~s~hK~l~~p~g~GGPg~G~i~~~-~~l~~~lp~~~~g~~~~~~~~~~~~ 837 (985)
. .+ +.. ..+. ..| +++.|++|.|+.| |.++|++++. +.+...+... .
T Consensus 245 ~f~~~~~~si~~l~~~~~~~~~~~~~v~vv~S~SK~~glp----GlRvG~li~~~~~l~~~~~~~--------------~ 306 (496)
T PLN02376 245 VFAGGDFVSVAEVVNDVDISEVNVDLIHIVYSLSKDMGLP----GFRVGIVYSFNDSVVSCARKM--------------S 306 (496)
T ss_pred ccCCCCcccHHHhhccccccccCCCeEEEEEeccccCCCC----cceEEEEEECCHHHHHHHHHH--------------h
Confidence 1 11 110 0010 123 3467889998654 7899999985 3333221100 0
Q ss_pred CCCCCCCcchhhhHHHHHHHHHHHHhcHHH-----HHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecC
Q 001989 838 PLGTIAAAPWGSALILPISYTYIAMMGSKG-----LTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRG 911 (985)
Q Consensus 838 ~~~~i~s~~~g~~~~~~~a~a~l~~lg~eG-----l~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~ 911 (985)
....+++ ..+ .+++ ..+.... +.+..++..++.+++.+.|++ ++.+. .+.+..+ +.++++.
T Consensus 307 ~~~~vs~--~~Q-----~a~~--~~L~d~~~~~~~l~~~r~~l~~r~~~l~~~L~~~gi~~~--~~~aG~f--lwi~l~~ 373 (496)
T PLN02376 307 SFGLVSS--QTQ-----LMLA--SMLSDDQFVDNFLMESSRRLGIRHKVFTTGIKKADIACL--TSNAGLF--AWMDLRH 373 (496)
T ss_pred hcCCCCH--HHH-----HHHH--HHhCChhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCccc--CCCceEE--EEEEchh
Confidence 0111111 111 1111 1222211 223344456666778888876 44432 2223233 3456542
Q ss_pred cccc-CCC-CHHHHHHHHHHC-CCccCC-CCC--CCCCEEEEeccCCCCHHHHHHHHccCChhHHHHhhc
Q 001989 912 LKNT-AGI-EPEDVAKRLMDY-GFHGPT-MSW--PVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRLK 975 (985)
Q Consensus 912 ~~~~-~g~-~~~~v~~~L~~~-Gi~~~~-~~~--p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~~ 975 (985)
.... ... +..++++.|.++ |+.+.+ ..| ..++++||++.. .++++++. .++.|++.+.+.+
T Consensus 374 ~~~~~~~~~~e~~l~~~ll~~~gV~v~pGs~F~~~~~g~~Ri~fa~-~~~~~l~~--al~rl~~~l~~~~ 440 (496)
T PLN02376 374 LLRDRNSFESEIELWHIIIDKVKLNVSPGSSFRCTEPGWFRICFAN-MDDDTLHV--ALGRIQDFVSKNK 440 (496)
T ss_pred hhccCCchhHHHHHHHHHHHcCCEEEeCccccCCCCCCEEEEEeeC-CCHHHHHH--HHHHHHHHHHHhh
Confidence 1000 001 235788888764 988653 223 235899999974 34688888 6777777776443
|
|
| >TIGR03588 PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase | Back alignment and domain information |
|---|
Probab=99.54 E-value=7e-13 Score=153.16 Aligned_cols=290 Identities=14% Similarity=0.119 Sum_probs=181.2
Q ss_pred HHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc----
Q 001989 213 LLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL---- 288 (985)
Q Consensus 213 i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~---- 288 (985)
..++++.+|+++|.+. ...+.+||+++..++.++.+. +||+|+++...|+++...++ ..|++++++|.
T Consensus 31 ~~~le~~la~~~g~~~--~v~~~sgt~al~~~l~al~~~--~Gd~Viv~~~~~~~~~~~~~----~~G~~~~~~~~~~~~ 102 (380)
T TIGR03588 31 VPAFEEALAEYVGAKY--AVAFNSATSALHIACLALGVG--PGDRVWTTPITFVATANCAL----YCGAKVDFVDIDPDT 102 (380)
T ss_pred HHHHHHHHHHHHCCCe--EEEEcCHHHHHHHHHHHcCCC--CCCEEEeCCcchHHHHHHHH----HcCCEEEEEecCCCc
Confidence 3557889999999864 456678888777766665433 89999999999998887764 36888888765
Q ss_pred -----hhhhc-cC----CCEeEEEEEcCCCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCCCCCcccc----eEEEe
Q 001989 289 -----KDIDY-KS----GDVCGVLVQYPGTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKPPGELGA----DIVVG 354 (985)
Q Consensus 289 -----~~l~~-l~----~~t~~V~v~~pn~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~~~~~~Ga----Di~v~ 354 (985)
+++++ ++ ++|++|++++ ++|...|+++|.++|+++|+++++|+ .+++|.......+|. |++++
T Consensus 103 ~~~d~~~l~~~i~~~~~~~t~~v~~~~--~~G~~~~~~~i~~l~~~~~~~lI~D~-a~a~g~~~~~~~~g~~~~~d~~~~ 179 (380)
T TIGR03588 103 GNIDEDALEKKLAAAKGKLPKAIVPVD--FAGKSVDMQAIAALAKKHGLKIIEDA-SHALGAEYGGKPVGNCRYADATVF 179 (380)
T ss_pred CCcCHHHHHHHhhcccCCCceEEEEeC--CCCccCCHHHHHHHHHHcCCEEEEEC-CCcccCccCCEeCCCccccceEEE
Confidence 34555 66 6899988776 47999999999999999999999953 456654333344555 99999
Q ss_pred cC---ccccccCCCCCCcEEEEEE-chhhHhcCCC-ceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHH
Q 001989 355 SA---QRFGVPMGYGGPHAAFLAT-SQEYKRMMPG-RIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLAN 429 (985)
Q Consensus 355 s~---k~lg~P~~~GGP~~G~l~~-~~~~~~~lp~-~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~ 429 (985)
|. |+++.+ ..|++.+ ++++.+++.. +..|+..+... + .... ....+.+.++ +..+..+..+
T Consensus 180 S~~~~K~~~~~------~GG~v~~~~~~~~~~~~~~~~~g~~~~~~~---~-~~~~--~~~~~~~~~~--~g~n~~m~~l 245 (380)
T TIGR03588 180 SFHPVKIITTA------EGGAVTTNDEELAERMRLLRSHGITKDPLL---F-EKQD--EGPWYYEQQE--LGFNYRMTDI 245 (380)
T ss_pred ecCCCCccccc------CceEEEECCHHHHHHHHHHHHCCCCCCccc---c-cccc--cCcceeeeec--cccccCccHH
Confidence 96 445322 2244444 4555554421 11121111000 0 0000 0000111111 0011112223
Q ss_pred HHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCC-------CcceEEEecC---CHHHHHHHHHHcCcee
Q 001989 430 MAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLP-------FFDTVKVKCA---DAHAIASAAYKIEMNL 499 (985)
Q Consensus 430 ~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~-------~~~~~~~~~~---~~~~v~~~L~~~GI~~ 499 (985)
.|++-+..+ +.++++.++-.++++++.+.|.+++++++...+ ....+.+... ...++.+.|.++||.+
T Consensus 246 ~aa~g~~qL--~~l~~~~~~r~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~r~~l~~~L~~~gI~~ 323 (380)
T TIGR03588 246 QAALGLSQL--KKLDRFVAKRREIAARYDRLLKDLPYFTPLTIPLGSKSAWHLYPILLDQEFGCTRKEVFEALRAAGIGV 323 (380)
T ss_pred HHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhcCCCCccCCCCCCCCEeEEEEEEEEECCcCCCCHHHHHHHHHHCCCCc
Confidence 333311222 347888888899999999999998646644221 1112333321 2789999999999965
Q ss_pred eeec-------------------------CCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 500 RVVD-------------------------SNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 500 ~~~~-------------------------~~~lris~t~~~t~edId~li~aL~~ 529 (985)
+... ...+.+.++...|++|+++++++|+.
T Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~p~a~~~~~~~l~lP~~~~l~~~dv~~i~~~l~~ 378 (380)
T TIGR03588 324 QVHYIPVHLQPYYRQGFGDGDLPSAENFYLAEISLPLHPALTLEQQQRVVETLRK 378 (380)
T ss_pred ccCCcccccChhhhccCCcCCCcHHHHHHhceEEcCCCCCCCHHHHHHHHHHHHH
Confidence 3100 15588889999999999999999874
|
This family of enzymes are aminotransferases of the pfam01041 family involved in the biosynthesis of pseudaminic acid. They convert UDP-4-keto-6-deoxy-N-acetylglucosamine into UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic acid has a role in surface polysaccharide in Pseudomonas as well as in the modification of flagellin in Campylobacter and Helicobacter species. |
| >TIGR01326 OAH_OAS_sulfhy OAH/OAS sulfhydrylase | Back alignment and domain information |
|---|
Probab=99.54 E-value=2e-12 Score=150.74 Aligned_cols=156 Identities=19% Similarity=0.207 Sum_probs=119.8
Q ss_pred HHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCccc-H---HHHHHCCcEEEEEcC
Q 001989 634 FNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTN-P---ATAAMCGMKIVSVGT 709 (985)
Q Consensus 634 ~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~-~---~~a~~~G~~vv~v~~ 709 (985)
..++++.+++++|.+. .+.+++|+.|+.++++++. .++++||+++..|+.. . ..+...|++++.++.
T Consensus 59 ~~~le~~lA~l~g~~~-~v~~~sG~~Ai~~al~~l~--------~~Gd~Vl~~~~~y~~t~~~~~~~~~~~G~~v~~v~~ 129 (418)
T TIGR01326 59 TDVLEQRIAALEGGVA-ALAVASGQAAITYAILNLA--------QAGDNIVSSSYLYGGTYNLFKHTLKRLGIEVRFVDP 129 (418)
T ss_pred HHHHHHHHHHHhCCCe-EEEEccHHHHHHHHHHHHh--------CCCCEEEEECCCcHHHHHHHHHHHHHcCcEEEEECC
Confidence 3578999999999765 4666788887765555442 3678999987655432 2 224578999999986
Q ss_pred CCCCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCccCCcEEE
Q 001989 710 DAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIGADVCH 788 (985)
Q Consensus 710 d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~g~Di~~ 788 (985)
+ |+++++++++ +++++|++++| |++|.+. |+++|+++||++|+++++|+++..+ ....|..+|+|+++
T Consensus 130 ~-----d~~~l~~~l~---~~t~~V~le~p~NPtg~v~-dl~~I~~la~~~~i~livD~t~~~~--~~~~~l~~g~Divv 198 (418)
T TIGR01326 130 D-----DPEEFEKAID---ENTKAVFAETIGNPAINVP-DIEAIAEVAHAHGVPLIVDNTFATP--YLCRPIDHGADIVV 198 (418)
T ss_pred C-----CHHHHHHhcC---cCCeEEEEECCCCCCCeec-CHHHHHHHHHHcCCEEEEECCCchh--hcCCchhcCCeEEE
Confidence 3 8999999997 78999999998 5789988 8999999999999999999987532 23456677899999
Q ss_pred eCCcccccccCCCCCCceEEEEEcc
Q 001989 789 LNLHKTFCIPHGGGGPGMGPIGVKK 813 (985)
Q Consensus 789 ~s~hK~l~~p~g~GGPg~G~i~~~~ 813 (985)
.|++|+|+. .|..+|.+++++
T Consensus 199 ~S~sK~l~g----~G~~lGg~v~~~ 219 (418)
T TIGR01326 199 HSATKYIGG----HGTAIGGVIVDG 219 (418)
T ss_pred ECccccccC----CccceEEEEEec
Confidence 999999953 244567666653
|
This model describes a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine (OAH) sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS) sulphydrylase (EC 2.5.1.47). An alternate name for OAH sulfhydrylase is homocysteine synthase. This model is designated subfamily because it may or may not have both activities. |
| >PLN02509 cystathionine beta-lyase | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.5e-13 Score=160.48 Aligned_cols=217 Identities=19% Similarity=0.206 Sum_probs=149.0
Q ss_pred HHHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHH----HHHCCcEEEEEc
Q 001989 633 MFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPAT----AAMCGMKIVSVG 708 (985)
Q Consensus 633 ~~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~----a~~~G~~vv~v~ 708 (985)
..++++++++++.|.+.+ +.+++|..+. +++..+ . ++||+||+++..|+.+... ....|++++.++
T Consensus 134 t~~aLE~~lA~leg~e~a-i~~~SG~aAi-~~il~l---l-----~~GD~VI~~~~~y~~t~~ll~~~l~~~G~~v~~vd 203 (464)
T PLN02509 134 TRDALESLLAKLDKADRA-FCFTSGMAAL-SAVTHL---I-----KNGEEIVAGDDVYGGSDRLLSQVVPRSGVVVKRVN 203 (464)
T ss_pred HHHHHHHHHHHHhCCCEE-EEeCcHHHHH-HHHHHH---h-----CCCCEEEEcCCchhhHHHHHHHHHHHCCeEEEEeC
Confidence 356788999999987654 5556776654 332222 1 4789999988877765432 346799998887
Q ss_pred CCCCCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCccCCcEE
Q 001989 709 TDAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIGADVC 787 (985)
Q Consensus 709 ~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~g~Di~ 787 (985)
. .|+++++++++ ++|++|++++| |++|.+. |+++|+++||++|++++||+++..+. +..|..+|+|++
T Consensus 204 ~-----~d~e~l~~ai~---~~TklV~lesPsNPtG~i~-Dl~~I~~lAk~~g~~lIVD~A~a~~~--~~~pl~~gaDiv 272 (464)
T PLN02509 204 T-----TNLDEVAAAIG---PQTKLVWLESPTNPRQQIS-DIRKIAEMAHAQGALVLVDNSIMSPV--LSRPLELGADIV 272 (464)
T ss_pred C-----CCHHHHHHhCC---cCCeEEEEECCCCCCCCHH-HHHHHHHHHHHcCCEEEEECCccccc--cCChhhcCCcEE
Confidence 5 37999999997 88999999999 5799997 99999999999999999999975333 345667899999
Q ss_pred EeCCcccccccCCCCCCceEEEEEccc-ccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHH
Q 001989 788 HLNLHKTFCIPHGGGGPGMGPIGVKKH-LAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSK 866 (985)
Q Consensus 788 ~~s~hK~l~~p~g~GGPg~G~i~~~~~-l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~e 866 (985)
++|++|+++.+ |+..+|+++++++ +...+.. . + ...+...+ + ..||..+. |-+
T Consensus 273 v~S~tK~l~G~---gdv~gG~v~~~~~~l~~~~~~--~----------~-~~~g~~l~-----p---~~A~l~lr--~L~ 326 (464)
T PLN02509 273 MHSATKFIAGH---SDVMAGVLAVKGEKLAKEVYF--L----------Q-NSEGSGLA-----P---FDCWLCLR--GIK 326 (464)
T ss_pred EecCcccccCC---CccceeEEEeccHHHHHHHHH--H----------H-HhcCCCcC-----H---HHHHHHHh--hhh
Confidence 99999998522 2334788887643 2221110 0 0 00011111 1 11333333 445
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccC---CeeecC
Q 001989 867 GLTEASKIAILNANYMAKRLEKHY---PILFRG 896 (985)
Q Consensus 867 Gl~~~~~~~~~~a~~l~~~L~~g~---~l~~~~ 896 (985)
-+..+.++..+++.++.+.|++.. +|.|++
T Consensus 327 tL~~R~~r~~~nA~~la~~L~~~p~V~~V~yPg 359 (464)
T PLN02509 327 TMALRIEKQQENARKIAMYLSSHPRVKKVYYAG 359 (464)
T ss_pred hHHHHHHHHHHHHHHHHHHHhcCCCccEEECCC
Confidence 566778889999999999998643 345543
|
|
| >PRK05387 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.8e-12 Score=146.56 Aligned_cols=269 Identities=14% Similarity=0.092 Sum_probs=178.9
Q ss_pred HHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCch----
Q 001989 214 LNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDLK---- 289 (985)
Q Consensus 214 ~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~~---- 289 (985)
.++++.+|++++.++.++.++.|++.++..+..++ . .+||+|++++-.|+.+...++ ..|++++.++.+
T Consensus 63 ~~lr~aia~~~~~~~~~I~it~G~~~al~~~~~~l-~--~~gd~vlv~~P~y~~~~~~~~----~~g~~~~~v~~~~~~~ 135 (353)
T PRK05387 63 DALRQAIAAYYGLDPEQVFVGNGSDEVLAHAFLAF-F--NHDRPLLFPDITYSFYPVYAG----LYGIPYEEIPLDDDFS 135 (353)
T ss_pred HHHHHHHHHHhCCCHHHEEEcCCHHHHHHHHHHHh-c--CCCCEEEEeCCCHHHHHHHHH----HcCCEEEEeecCCCCC
Confidence 36788999999999999999999997776665554 2 389999999988877665543 468888887653
Q ss_pred -hhhccCCCEeEEEEEcC-CCCeeeccHHHHHHHHHhC-CcEEEEEecCccccCC---CCCCcccceEEEecC-cccccc
Q 001989 290 -DIDYKSGDVCGVLVQYP-GTEGEVLDYGDFIKNAHAN-GVKVVMATDLLALTIL---KPPGELGADIVVGSA-QRFGVP 362 (985)
Q Consensus 290 -~l~~l~~~t~~V~v~~p-n~~G~v~di~~I~~~a~~~-galliV~a~~~~lg~l---~~~~~~GaDi~v~s~-k~lg~P 362 (985)
+++++.+.+++|++.+| |.+|.+.+.+++.++++.+ |+++++|.....++.- .......-.|+++|. |.|+.|
T Consensus 136 ~d~~~l~~~~~~v~~~~P~NPtG~~~~~~~~~~l~~~~~~~~livDe~y~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~ 215 (353)
T PRK05387 136 IDVEDYLRPNGGIIFPNPNAPTGIALPLAEIERILAANPDSVVVIDEAYVDFGGESAIPLIDRYPNLLVVQTFSKSRSLA 215 (353)
T ss_pred CCHHHHHhcCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCcEEEEeCcccccCCcchHHHHhhCCCEEEEEehhHhhcch
Confidence 12233345678888888 7899999999999999876 8888885311112110 001123346888886 888643
Q ss_pred CCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCC-CccchhHHHHHHHHHHHHHhCcc
Q 001989 363 MGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATS-NICTAQALLANMAAMYAVYHGPE 441 (985)
Q Consensus 363 ~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~ats-ni~t~~~l~a~~aa~~l~~~g~~ 441 (985)
|.-+|++++++++++.+.. .+... ..+. +.+ +..++.. .+...+
T Consensus 216 ----GlR~G~~~~~~~~~~~l~~----------------------------~~~~~~~~~~-~~~-~q~~~~~-~l~~~~ 260 (353)
T PRK05387 216 ----GLRVGFAIGHPELIEALNR----------------------------VKNSFNSYPL-DRL-AQAGAIA-AIEDEA 260 (353)
T ss_pred ----hhhceeeecCHHHHHHHHH----------------------------hhccCCCCCc-CHH-HHHHHHH-HhcCHH
Confidence 3457899888777655410 00000 0111 111 1111111 122234
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCCCcceEEEecCC--HHHHHHHHHHcCceeeeec----CCeEEEEeccCC
Q 001989 442 GLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDTVKVKCAD--AHAIASAAYKIEMNLRVVD----SNTVTASFDETT 515 (985)
Q Consensus 442 Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~--~~~v~~~L~~~GI~~~~~~----~~~lris~t~~~ 515 (985)
.+++..++..++.+++.+.|+++| +++... ...-+.+..++ ..++.+.|.++||.++... .+.+|++++
T Consensus 261 ~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~iRis~~--- 335 (353)
T PRK05387 261 YFEETRAKVIATRERLVEELEALG-FEVLPS-KANFVFARHPSHDAAELAAKLRERGIIVRHFNKPRIDQFLRITIG--- 335 (353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCC-CeECCC-cCcEEEEECCCCCHHHHHHHHHHCCEEEEECCCCCCCCeEEEEeC---
Confidence 467788888889999999999987 876532 11123345543 7889999999999885432 368999987
Q ss_pred CHHHHHHHHHHHhC
Q 001989 516 TLEDVDKLFIVFAG 529 (985)
Q Consensus 516 t~edId~li~aL~~ 529 (985)
+.+++++++++|..
T Consensus 336 ~~~~~~~~~~~L~~ 349 (353)
T PRK05387 336 TDEEMEALVDALKE 349 (353)
T ss_pred CHHHHHHHHHHHHH
Confidence 67999999999873
|
|
| >KOG1359 consensus Glycine C-acetyltransferase/2-amino-3-ketobutyrate-CoA ligase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.8e-13 Score=142.19 Aligned_cols=293 Identities=16% Similarity=0.210 Sum_probs=179.8
Q ss_pred hhhhHHHHHHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEE
Q 001989 626 QAQGYQEMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIV 705 (985)
Q Consensus 626 ~~~G~~~~~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv 705 (985)
...|++..+.++++.++++.+-+...+++ ++-.|+.+++-++. ++.+-|+.....|.+.-. |++.-
T Consensus 106 fIcGtq~iHk~LE~kiAqfh~rED~ilyp-scfdANag~feail--------~pedAvfSDeLNhASIId-----GirLc 171 (417)
T KOG1359|consen 106 FICGTQDIHKLLESKIAQFHGREDTILYP-SCFDANAGAFEAIL--------TPEDAVFSDELNHASIID-----GIRLC 171 (417)
T ss_pred EEecchHHHHHHHHHHHHHhCCCceEEec-cccccchHHHHHhc--------Chhhhhhccccccchhhh-----hhHHH
Confidence 34688889999999999999988765554 45445544444443 356655555544443322 22221
Q ss_pred EEcCCCCCCCCHHHHHHHHHhc-CCCEEEEEEEcC--CCccccccCHHHHHHHHHHcCCEEEEEccccccccCCC---CC
Q 001989 706 SVGTDAKGNINIEELRKAAEAN-RDNLSTLMVTYP--STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLT---SP 779 (985)
Q Consensus 706 ~v~~d~~g~iD~e~L~~~i~~~-~~~t~~Vvv~~p--n~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~---~p 779 (985)
...+.+|+-+++..+.+. +-+.+ ++++.. +..|-+- |+++|++++++||+++++|.+|..+..|.. ..
T Consensus 172 ----kry~h~dv~~l~~~l~~a~k~r~k-lv~TDg~FSMDGdia-Pl~ei~~La~kYgaLlfiDecHaTgf~G~tGrGt~ 245 (417)
T KOG1359|consen 172 ----KRYRHVDVFDLEHCLISACKMRLK-LVVTDGVFSMDGDIA-PLEEISQLAKKYGALLFIDECHATGFFGETGRGTA 245 (417)
T ss_pred ----hhhccchhHHHHHHHHHhhhheEE-EEEecceeccCCCcc-cHHHHHHHHHhcCcEEEEeecccceeecCCCCChH
Confidence 134667888888777532 12344 445443 4578887 899999999999999999999965443321 01
Q ss_pred Ccc----CCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHH
Q 001989 780 GYI----GADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPI 855 (985)
Q Consensus 780 g~~----g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~ 855 (985)
..+ .+|++..++.|.+ ||-.+|+..+++.+...+..+ .|.+-++|.- +......+++
T Consensus 246 E~~~vm~~vdiinsTLgKAl------Gga~GGyttgp~~li~llrqr-----------~RpylFSnsl--ppavV~~a~k 306 (417)
T KOG1359|consen 246 EEFGVMGDVDIINSTLGKAL------GGASGGYTTGPKPLISLLRQR-----------SRPYLFSNSL--PPAVVGMAAK 306 (417)
T ss_pred HHhCCCCcceehhhhhhhhh------cCCCCCCccCChhHHHHHHhc-----------CCceeecCCC--ChhhhhhhHH
Confidence 112 3789888777877 456678998888777665422 1122223321 1112222233
Q ss_pred HHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCcc
Q 001989 856 SYTYIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHG 934 (985)
Q Consensus 856 a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~ 934 (985)
++.. .+.. .+...+...+.+++++..+. |+.+. +...|.. .+.+.- -.-+..+++.|.+.||++
T Consensus 307 a~dl--lm~s---~~~i~~~~a~~qrfr~~me~aGftIs--g~~hPI~-pv~lGd-------a~lA~~~ad~lLk~Gi~V 371 (417)
T KOG1359|consen 307 AYDL--LMVS---SKEIQSRQANTQRFREFMEAAGFTIS--GASHPIC-PVMLGD-------ARLASKMADELLKRGIYV 371 (417)
T ss_pred HHHH--HHhh---HHHHHHHHHHHHHHHHHHHhcCceec--CCCCCcc-ceeccc-------HHHHHHHHHHHHhcCceE
Confidence 3322 2222 22334556677888888775 78764 2111221 122211 123567888999999998
Q ss_pred CCCCCCC----CCEEEEeccCCCCHHHHHHHHccCChhHHHHhh
Q 001989 935 PTMSWPV----PGTLMIEPTESESKSWTGIVMLSSPSEKKLHRL 974 (985)
Q Consensus 935 ~~~~~p~----~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~ 974 (985)
-..++|+ .-.||+.++.-+|+||||+ +++++.++...+
T Consensus 372 igfs~PvVP~gkariRVqiSAaHt~edid~--~i~Af~~vgr~~ 413 (417)
T KOG1359|consen 372 IGFSYPVVPKGKARIRVQISAAHTEEDIDR--LIEAFSEVGRFL 413 (417)
T ss_pred EeecCCcCCCCceEEEEEEehhcCHHHHHH--HHHHHHHHHHhh
Confidence 7777773 3568999999999999999 777777766544
|
|
| >PRK06358 threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=7.9e-13 Score=151.16 Aligned_cols=280 Identities=15% Similarity=0.117 Sum_probs=173.8
Q ss_pred HHHHHHHHHHhCCCccceecCcHHH-HHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcCCCC-
Q 001989 635 NNLGEWLCTITGFDSFSLQPNAGAA-GEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAK- 712 (985)
Q Consensus 635 ~e~~~~la~l~G~~~~~~~~~sGa~-a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~d~~- 712 (985)
.++++.++++++.+..++..++|++ +. ..+++.+ .+ +.|+++++.++.+...++..|++++.++.+.+
T Consensus 57 ~~lr~~ia~~~~~~~~~i~it~Ga~~~l---~~~~~~~------~~-~~v~i~~P~y~~~~~~~~~~g~~~~~~~~~~~~ 126 (354)
T PRK06358 57 LELRKRIASFEQLDLENVILGNGATELI---FNIVKVT------KP-KKVLILAPTFAEYERALKAFDAEIEYAELTEET 126 (354)
T ss_pred HHHHHHHHHHhCCChhhEEECCCHHHHH---HHHHHHh------CC-CcEEEecCChHHHHHHHHHcCCeeEEEeCcccc
Confidence 4788889999998887766666665 33 2333322 13 46888888776676677889999999998643
Q ss_pred -CCCCHHHHHHHHHhcCCCEEEEEEEcC-CCcccccc--CHHHHHHHHHHcCCEEEEEccccccc-cCCC-C----CCcc
Q 001989 713 -GNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEE--GIDEICKIIHDNGGQVYMDGANMNAQ-VGLT-S----PGYI 782 (985)
Q Consensus 713 -g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~--di~eI~~la~~~galliVD~a~~~~~-~~l~-~----pg~~ 782 (985)
+.+| +++.+.+. +++++|++++| |++|.+.+ .+++|.++|+++|+++++|+++..-. .+.. . ....
T Consensus 127 ~~~~d-~~~~~~~~---~~~~~v~~~~P~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~ 202 (354)
T PRK06358 127 NFAAN-EIVLEEIK---EEIDLVFLCNPNNPTGQLISKEEMKKILDKCEKRNIYLIIDEAFMDFLEENETISMINYLENF 202 (354)
T ss_pred CCCcc-HHHHHhhc---cCCCEEEEeCCCCCCCCccCHHHHHHHHHHHHhcCCEEEEeCcccccCCCccchhHHHhccCC
Confidence 4688 66666665 56888989999 57998861 48889999999999999999873111 1100 0 0111
Q ss_pred CCcEEEeCCcccccccCCCCCCceEEEEEc-ccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHH
Q 001989 783 GADVCHLNLHKTFCIPHGGGGPGMGPIGVK-KHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIA 861 (985)
Q Consensus 783 g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~-~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~ 861 (985)
.-=+++.|+.|+|++| |.++|++++. +.+...+... . ...++++ ..+ .++...
T Consensus 203 ~~vi~~~S~SK~~gl~----G~RiG~lv~~~~~~~~~~~~~------------~--~~~~~~~--~~q----~~~~~~-- 256 (354)
T PRK06358 203 KNLIIIRAFTKFFAIP----GLRLGYGLTSNKNLAEKLLQM------------R--EPWSINT--FAD----LAGQTL-- 256 (354)
T ss_pred CCEEEEEechhhccCc----chhheeeecCCHHHHHHHHHh------------C--CCCcchH--HHH----HHHHHH--
Confidence 1125677888888654 7899999875 4444332110 0 0001110 011 111122
Q ss_pred HhcHH-HHHHHHHHHHHHHHHHHHHhhccCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCC-CC
Q 001989 862 MMGSK-GLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTM-SW 939 (985)
Q Consensus 862 ~lg~e-Gl~~~~~~~~~~a~~l~~~L~~g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~-~~ 939 (985)
+..+ -+.+..+...++++++.+.|++...+.+..+.+. + +.+.++ +..+++++|.++||.+... .|
T Consensus 257 -l~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~g~-f--~~~~~~--------~~~~~~~~l~~~gI~v~~~~~f 324 (354)
T PRK06358 257 -LDDKEYIKKTIQWIKEEKDFLYNGLSEFKGIKVYKPSVN-F--IFFKLE--------KPIDLRKELLKKGILIRSCSNY 324 (354)
T ss_pred -hccHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEcCCcce-E--EEEEcC--------chHHHHHHHHHCCeEEEECCCC
Confidence 2222 2344455567777888888876222322222232 2 345543 2478999999999987543 23
Q ss_pred C--CCCEEEEeccCCCCHHHHHHHHccCChhHHH
Q 001989 940 P--VPGTLMIEPTESESKSWTGIVMLSSPSEKKL 971 (985)
Q Consensus 940 p--~~~~lris~t~~~t~eeId~~~~~~~l~~~~ 971 (985)
+ ..+++||++ .++++.++ ++++|++++
T Consensus 325 ~~~~~~~iRls~---~~~~~~~~--l~~~l~~~~ 353 (354)
T PRK06358 325 RGLDENYYRVAV---KSREDNKK--LLKALEVIL 353 (354)
T ss_pred CCCCCCEEEEEe---CCHHHHHH--HHHHHHHHh
Confidence 2 246899998 88999999 667776654
|
|
| >TIGR01326 OAH_OAS_sulfhy OAH/OAS sulfhydrylase | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.4e-12 Score=150.07 Aligned_cols=142 Identities=24% Similarity=0.225 Sum_probs=116.9
Q ss_pred HHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc---hh
Q 001989 214 LNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL---KD 290 (985)
Q Consensus 214 ~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~---~~ 290 (985)
.++++.+|+++|.+. +.++++|++++.++++++ .. +||+||++...|+.....+...++..|++++.+|. ++
T Consensus 60 ~~le~~lA~l~g~~~--~v~~~sG~~Ai~~al~~l-~~--~Gd~Vl~~~~~y~~t~~~~~~~~~~~G~~v~~v~~~d~~~ 134 (418)
T TIGR01326 60 DVLEQRIAALEGGVA--ALAVASGQAAITYAILNL-AQ--AGDNIVSSSYLYGGTYNLFKHTLKRLGIEVRFVDPDDPEE 134 (418)
T ss_pred HHHHHHHHHHhCCCe--EEEEccHHHHHHHHHHHH-hC--CCCEEEEECCCcHHHHHHHHHHHHHcCcEEEEECCCCHHH
Confidence 467899999999754 678899998888777654 22 88999999999988887776666778999999876 45
Q ss_pred hhc-cCCCEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCCCCCcccceEEEecC-ccccc
Q 001989 291 IDY-KSGDVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKPPGELGADIVVGSA-QRFGV 361 (985)
Q Consensus 291 l~~-l~~~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~~~~~~GaDi~v~s~-k~lg~ 361 (985)
+++ +++++++|++.+| |.+|.+.|+++|+++||++|++++|| +.++.+....|.++|+||++.|. |++++
T Consensus 135 l~~~l~~~t~~V~le~p~NPtg~v~dl~~I~~la~~~~i~livD-~t~~~~~~~~~l~~g~Divv~S~sK~l~g 207 (418)
T TIGR01326 135 FEKAIDENTKAVFAETIGNPAINVPDIEAIAEVAHAHGVPLIVD-NTFATPYLCRPIDHGADIVVHSATKYIGG 207 (418)
T ss_pred HHHhcCcCCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEE-CCCchhhcCCchhcCCeEEEECccccccC
Confidence 556 7888999999987 78999999999999999999999994 45555655566788999999998 77753
|
This model describes a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine (OAH) sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS) sulphydrylase (EC 2.5.1.47). An alternate name for OAH sulfhydrylase is homocysteine synthase. This model is designated subfamily because it may or may not have both activities. |
| >PRK05839 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=7.8e-13 Score=152.38 Aligned_cols=289 Identities=11% Similarity=-0.010 Sum_probs=170.0
Q ss_pred hhHHHHHHHHHHHHHHHhCC--CccceecCcHHH-HHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEE
Q 001989 628 QGYQEMFNNLGEWLCTITGF--DSFSLQPNAGAA-GEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKI 704 (985)
Q Consensus 628 ~G~~~~~~e~~~~la~l~G~--~~~~~~~~sGa~-a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~v 704 (985)
+|..++.+.+.+++++.+|. +..++..++|++ +.. .+++.+.. ..+++.|+++.+.+..+...+...|+++
T Consensus 60 ~G~~~lr~aia~~l~~~~g~~~~~~~I~it~G~~~al~---~~~~~~~~---~~~gd~vlv~~P~y~~~~~~~~~~g~~v 133 (374)
T PRK05839 60 AGEESLREAQRGFFKRRFKIELKENELIPTFGTREVLF---NFPQFVLF---DKQNPTIAYPNPFYQIYEGAAIASRAKV 133 (374)
T ss_pred CCCHHHHHHHHHHHHHHhCCCCCcceEEEecCcHHHHH---HHHHHHhc---CCCCCEEEECCCCchhhHHHHHhcCCEE
Confidence 57667777788888888774 455666666665 332 22222110 1256889999887777777788999999
Q ss_pred EEEcCCCC--CCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccc--cCHHHHHHHHHHcCCEEEEEcccccccc--CCC
Q 001989 705 VSVGTDAK--GNINIEELRKAAEANRDNLSTLMVTYP-STHGVYE--EGIDEICKIIHDNGGQVYMDGANMNAQV--GLT 777 (985)
Q Consensus 705 v~v~~d~~--g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~--~di~eI~~la~~~galliVD~a~~~~~~--~l~ 777 (985)
+.++.+++ +.+|+++. .+ +++++|++++| |++|.+- ..+++|.++|+++|+++++|.++..-.. ...
T Consensus 134 ~~v~~~~~~~~~~d~~~~--~~----~~~k~v~i~nP~NPTG~~~s~~~l~~i~~~~~~~~~~ii~DE~Y~~~~~~~~~~ 207 (374)
T PRK05839 134 LLMPLTKENDFTPSLNEK--EL----QEVDLVILNSPNNPTGRTLSLEELIEWVKLALKHDFILINDECYSEIYENTPPP 207 (374)
T ss_pred EEeecccccCCcCCcchh--hh----ccccEEEEeCCCCCcCcccCHHHHHHHHHHHHHcCCEEEeccchhhcccCCCCC
Confidence 99998654 45555433 23 46889999999 5799985 2578888889999999999998742110 010
Q ss_pred CCC---------ccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchh
Q 001989 778 SPG---------YIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWG 848 (985)
Q Consensus 778 ~pg---------~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g 848 (985)
... ..+-=+++.|+.|.|+.| |.++|++++++++...+.... .....++++ ..
T Consensus 208 s~~~~~~~~~~~~~~~vi~~~SfSK~~~~~----GlRiG~ii~~~~~~~~~~~~~------------~~~~~~~~~--~~ 269 (374)
T PRK05839 208 SLLEASILVGNESFKNVLVINSISKRSSAP----GLRSGFIAGDASILKKYKAYR------------TYLGCASPL--PL 269 (374)
T ss_pred CHhhhhcccCccccCcEEEEeccccccCCc----cceeEEEecCHHHHHHHHHHH------------hhcCCCCCh--HH
Confidence 000 111125677888887554 789999998876654332100 000011111 11
Q ss_pred hhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhccCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHH
Q 001989 849 SALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLM 928 (985)
Q Consensus 849 ~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~ 928 (985)
+. ++.+.+ ...+-+++..++..++.+++.+.|. .. . +.+..+ +.++++ +..+++++|.
T Consensus 270 q~----~~~~~l--~~~~~~~~~~~~~~~~~~~~~~~l~--~~--~--p~gg~f--i~~~~~--------~~~~~~~~l~ 327 (374)
T PRK05839 270 QK----AAAVAW--LDDEHAEFFRNIYAKNLKLAREILG--IT--I--PPATFY--VWLPVD--------NDEEFTKKLY 327 (374)
T ss_pred HH----HHHHHh--ccchHHHHHHHHHHHHHHHHHHhcC--CC--C--CCeeEE--EEEeCC--------ChHHHHHHHH
Confidence 11 111111 1223334444445555555555442 11 1 112222 234443 3578888887
Q ss_pred H-CCCccCCCC-CC----CCCEEEEeccCCCCHHHHHHHHccCChhHHHH
Q 001989 929 D-YGFHGPTMS-WP----VPGTLMIEPTESESKSWTGIVMLSSPSEKKLH 972 (985)
Q Consensus 929 ~-~Gi~~~~~~-~p----~~~~lris~t~~~t~eeId~~~~~~~l~~~~~ 972 (985)
+ +||.+.... +. .++++||+++. +.+++.+ .++.|.++++
T Consensus 328 ~~~gi~v~pg~~f~~~~~~~~~iRis~~~--~~~~~~~--~l~~l~~~l~ 373 (374)
T PRK05839 328 QNEGIKVLPGSFLGRNGIGKGYVRIALVY--DTPKLEK--ALEIIKTYLE 373 (374)
T ss_pred HHCCEEEeCchhhCCCCCCCCeEEEEecC--CHHHHHH--HHHHHHHHhh
Confidence 5 899865421 21 24899999963 6888888 6666766553
|
|
| >PTZ00377 alanine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.9e-12 Score=153.99 Aligned_cols=311 Identities=14% Similarity=0.085 Sum_probs=178.1
Q ss_pred hhHHHHHHHHHHHHHHHhCCC--ccceecCcHH-HHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEE
Q 001989 628 QGYQEMFNNLGEWLCTITGFD--SFSLQPNAGA-AGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKI 704 (985)
Q Consensus 628 ~G~~~~~~e~~~~la~l~G~~--~~~~~~~sGa-~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~v 704 (985)
+|..++.+.+.+++.+..|.+ ...+..++|+ ++...++.++. .+++|+|+++.+.+..+...++..|.++
T Consensus 115 ~G~~~LR~aia~~~~~~~g~~~~~~~I~it~Ga~~al~~~~~~l~-------~~~gD~Vlv~~P~y~~y~~~~~~~g~~~ 187 (481)
T PTZ00377 115 AGYPFVRKAVAAFIERRDGVPKDPSDIFLTDGASSGIKLLLQLLI-------GDPSDGVMIPIPQYPLYSAAITLLGGKQ 187 (481)
T ss_pred cCCHHHHHHHHHHHHHhcCCCCChhhEEEcCCHHHHHHHHHHHhc-------cCCCCEEEECCCCchhHHHHHHHcCCEE
Confidence 566566666666666555543 3455555554 44433333221 0368999999998877777788999999
Q ss_pred EEEcCCCC--CCCCHHHHHHHHHhc---CCCEEEEEEEcC-CCccccc--cCHHHHHHHHHHcCCEEEEEcccccc-c-c
Q 001989 705 VSVGTDAK--GNINIEELRKAAEAN---RDNLSTLMVTYP-STHGVYE--EGIDEICKIIHDNGGQVYMDGANMNA-Q-V 774 (985)
Q Consensus 705 v~v~~d~~--g~iD~e~L~~~i~~~---~~~t~~Vvv~~p-n~~G~i~--~di~eI~~la~~~galliVD~a~~~~-~-~ 774 (985)
+.++++++ +.+|+++|+++++.. .+++++|++++| |++|.+. ..+++|+++|+++|+++++|.++..- . .
T Consensus 188 v~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~k~l~l~~P~NPTG~~~s~e~~~~i~~~a~~~~~~iI~De~Y~~l~~~~ 267 (481)
T PTZ00377 188 VPYYLDEEKGWSLDQEELEEAYEQAVRNGITPRALVVINPGNPTGQVLTRDVMEEIIKFCYEKGIVLMADEVYQENIYDG 267 (481)
T ss_pred EEEEeccccCCCCCHHHHHHHHHHHHhcCCCeeEEEEECCCCCCCcCCCHHHHHHHHHHHHHCCCEEEEehhhHhhccCC
Confidence 99998753 579999999998721 127899999999 5799996 13899999999999999999987421 1 1
Q ss_pred C--CCCC----CccCC------c-EEEeCCcccc-cccCCCCCCceEEEEE---cccccCcCCCCccccCCCCCCCCCCC
Q 001989 775 G--LTSP----GYIGA------D-VCHLNLHKTF-CIPHGGGGPGMGPIGV---KKHLAPFLPSHPVVSTGGIPAPEKSQ 837 (985)
Q Consensus 775 ~--l~~p----g~~g~------D-i~~~s~hK~l-~~p~g~GGPg~G~i~~---~~~l~~~lp~~~~g~~~~~~~~~~~~ 837 (985)
. +... ..+.. . +++.|+.|+| ++| |.++|++++ ++++.+.+....
T Consensus 268 ~~~~~s~~~~~~~l~~~~~~~~~vi~~~S~SK~~~~~~----GlRiG~~~~~~~p~~li~~l~~~~-------------- 329 (481)
T PTZ00377 268 EKPFISFRKVLLELPAEYNTDVELVSFHSTSKGIIGEC----GRRGGYFELTNIPPEVREQIYKLA-------------- 329 (481)
T ss_pred CCCcccHHHHHHhhcccccCCeEEEEEecCCcccccCC----cCceEEEEEeCCCHHHHHHHHHHh--------------
Confidence 0 1000 01111 1 4567888974 544 789999987 555554332100
Q ss_pred CCCCCCCcchhhhHHHHHHHHHHHH--hcHH-------HHHHHHHHHHHHHHHHHHHhhccCCeeecCCCCceeeEEEEE
Q 001989 838 PLGTIAAAPWGSALILPISYTYIAM--MGSK-------GLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVD 908 (985)
Q Consensus 838 ~~~~i~s~~~g~~~~~~~a~a~l~~--lg~e-------Gl~~~~~~~~~~a~~l~~~L~~g~~l~~~~~~~~~~~~~iv~ 908 (985)
. ...+.+..++. ++.+++.. .+.. .+++..+...++++++.+.|++...+.+..+.+.++ +.++
T Consensus 330 ~-~~~~~~~~~Q~----a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~l~~~L~~~~g~~~~~p~gg~f--l~~~ 402 (481)
T PTZ00377 330 S-INLCSNVVGQL----MTGLMCNPPREGDASYPLYKRERDAIFTSLKRRAELLTDELNKIEGVSCQPVEGAMY--AFPR 402 (481)
T ss_pred h-eecCCChHHHH----HHHHHhCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEeecCCeeEE--EEee
Confidence 0 01111111222 11222211 0111 112222234566778888887632332223333333 2223
Q ss_pred ec--C-cc---ccCCC-CHHHHH-HHHHHCCCccCC-CCCC---CCCEEEEeccCCCCHHHHHHHHccCChhHHHHhh
Q 001989 909 LR--G-LK---NTAGI-EPEDVA-KRLMDYGFHGPT-MSWP---VPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRL 974 (985)
Q Consensus 909 ~~--~-~~---~~~g~-~~~~v~-~~L~~~Gi~~~~-~~~p---~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~ 974 (985)
++ . .. ...+. +..+++ ..|.++|+.+.. ..|. ..+++|+++. .+.+++++ .++.|.+.+++.
T Consensus 403 ~~l~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pG~~F~~~~~~~~~Rls~~--~~~e~l~~--~l~rl~~~~~~~ 476 (481)
T PTZ00377 403 IELPEKAIQEAKERGLAPDVLYCLELLESTGIVVVPGSGFGQKPGTYHFRITIL--PPEEQIEE--MVKKIKEFHESF 476 (481)
T ss_pred ccCchhhHHHHHhcCCCcHHHHHHHHHHHcCEEEeCCcccCCCCCCCEEEEEEC--CCHHHHHH--HHHHHHHHHHHH
Confidence 22 0 00 00001 123344 455667988543 2232 2368999997 66888998 778888877654
|
|
| >KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.7e-12 Score=140.01 Aligned_cols=365 Identities=14% Similarity=0.080 Sum_probs=206.3
Q ss_pred HHHHHHHHHHHhccccCc-ccccccccccccCCCcc------ccccccccccccccCCCCchhhhhhHHHHHHHHHHHHH
Q 001989 570 EHELLRYIHLLQSKELSL-CHSMIPLGSCTMKLNAT------TEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLC 642 (985)
Q Consensus 570 e~e~~~~l~~l~~~~~~~-~~~~~~lG~~t~~~~~~------~~~~~~~~~~f~~~~p~~p~e~~~G~~~~~~e~~~~la 642 (985)
-..++.++..+...-..- ..-+++||.|.|-+.+- ++.....--....++.|.| +.|...+ ++.+|
T Consensus 41 ~~tir~i~~~l~~~~~p~~~k~iipl~~GDPsv~~~~~ts~~a~~Av~~al~Sgk~N~Yap---s~G~~~A----R~AVA 113 (447)
T KOG0259|consen 41 SVTIRGILSALFDCCDPEKKKPILPLGHGDPSVYPCFRTSQEAEQAVVDALRSGKGNGYAP---SVGILPA----RRAVA 113 (447)
T ss_pred cccHHHHHHHHhhcCCcccCceeccCCCCCCCccccccCCHHHHHHHHHHHhcCCCCCcCC---ccccHHH----HHHHH
Confidence 345666666665543221 12468998876544331 1111111111223566766 6786654 45556
Q ss_pred HHhCCC------cc-ceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcCC--CCC
Q 001989 643 TITGFD------SF-SLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTD--AKG 713 (985)
Q Consensus 643 ~l~G~~------~~-~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~d--~~g 713 (985)
+.++-+ .. .+...+.+||++-++.++. +++..|++|++.+.-+...+...|++|+.++.- .+.
T Consensus 114 eYl~~~l~~kl~a~DV~ltsGC~qAIe~~i~~LA--------~p~aNILlPrPGfp~Y~~~a~~~~lEVR~ydlLPe~~w 185 (447)
T KOG0259|consen 114 EYLNRDLPNKLTADDVVLTSGCSQAIELAISSLA--------NPGANILLPRPGFPLYDTRAIYSGLEVRYYDLLPEKDW 185 (447)
T ss_pred HHhhcCCCCccCcCceEEeccchHHHHHHHHHhc--------CCCCceecCCCCCchHHHhhhhcCceeEeecccCcccc
Confidence 554322 12 2444444677765555442 477889999885555555578899999999874 458
Q ss_pred CCCHHHHHHHHHhcCCCEEEEEEEcCC-Cccccc--cCHHHHHHHHHHcCCEEEEEccccc-ccc--CCCCCCccCC--c
Q 001989 714 NINIEELRKAAEANRDNLSTLMVTYPS-THGVYE--EGIDEICKIIHDNGGQVYMDGANMN-AQV--GLTSPGYIGA--D 785 (985)
Q Consensus 714 ~iD~e~L~~~i~~~~~~t~~Vvv~~pn-~~G~i~--~di~eI~~la~~~galliVD~a~~~-~~~--~l~~pg~~g~--D 785 (985)
++|++.++++++ ++|.+++|.+|+ +.|.+- ..+++|+++|+++|++++.|+++-. ..+ .+...+.+.- -
T Consensus 186 eIDL~~veal~D---ENT~AivviNP~NPcGnVys~~HL~kiae~A~klgi~vIaDEVY~~~vfg~~pfvpmg~fssiVP 262 (447)
T KOG0259|consen 186 EIDLDGVEALAD---ENTVAIVVINPNNPCGNVYSEDHLKKIAETAKKLGIMVIADEVYGHTVFGDKPFVPMGKFSSIVP 262 (447)
T ss_pred eechHHHHHhhc---cCeeEEEEeCCCCCCcccccHHHHHHHHHHHHHhCCeEEehhhcceeecCCCCccchhhccccCc
Confidence 999999999999 899999999994 666663 3599999999999999999998621 111 1222344432 2
Q ss_pred E-EEeCCcccccccCCCCCCceEEEEEcccccCcCCCCc-cccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHh
Q 001989 786 V-CHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHP-VVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMM 863 (985)
Q Consensus 786 i-~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~-~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~l 863 (985)
+ ..++..|-+-.| ||++|.++..+.--.+-.... .+. +....+.. |.+....+|.--+..-
T Consensus 263 VitlggisKrW~VP----GWRlGWi~~hD~~gvf~~~~~~q~~----------~~~~~~~~---~p~TiiQ~AlP~IL~k 325 (447)
T KOG0259|consen 263 VITLGGISKRWIVP----GWRLGWIALHDPRGVFRDTKVVQGI----------KNFLDIIP---GPATIIQGALPDILEK 325 (447)
T ss_pred eEeecccccccccC----CceeeeEEEecccccccchHHHHHH----------HHHHhccC---CccHhHHHHhHHHHHh
Confidence 3 355668877777 899999998753221110000 000 00001100 0112233333222222
Q ss_pred cH-HHHHHHHHHHHHHHHHHHHHhhccCCee-ecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHC-CCc-cCCCCC
Q 001989 864 GS-KGLTEASKIAILNANYMAKRLEKHYPIL-FRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDY-GFH-GPTMSW 939 (985)
Q Consensus 864 g~-eGl~~~~~~~~~~a~~l~~~L~~g~~l~-~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~-Gi~-~~~~~~ 939 (985)
-+ +-+.....-...+++...++|++...+. ...|++..+--+-+++..|.+ -.+..+++.+|.++ .++ .++..+
T Consensus 326 Tp~efF~k~~~~lk~na~l~y~~Lk~IP~l~cp~kPeg~mylmv~l~~s~~~~--~~dD~dFc~kL~~Eesv~~LPG~af 403 (447)
T KOG0259|consen 326 TPEEFFDKKLSFLKSNADLCYSRLKDIPCLTCPVKPEGCMYLMVKLNLSLFPD--IEDDVDFCQKLAREESVICLPGQAF 403 (447)
T ss_pred ChHHHHHHHHHHHHhhHHHHHHHHhcCCCcccCcCCCcceEEEeccchhhhcc--ccccHHHHHHHhhhcceEEeccccc
Confidence 23 3344444446778888899998854443 112333222222222221110 12456888888664 555 344445
Q ss_pred CCCCEEEEeccCCCCHHHHHHHHccCChhHHHHhhc
Q 001989 940 PVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRLK 975 (985)
Q Consensus 940 p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~~ 975 (985)
..++++||+++- ..+.++. .++.|++...|.-
T Consensus 404 ~~~nw~Ri~i~~--~~~~lee--a~~Rik~Fc~RH~ 435 (447)
T KOG0259|consen 404 GLKNWLRIVITV--EEEMLEE--AFSRIKEFCDRHS 435 (447)
T ss_pred cCCCeEEEEEcc--ChHHHHH--HHHHHHHHHHhhh
Confidence 556999998853 3344555 5566676666544
|
|
| >PRK06425 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.53 E-value=9.1e-13 Score=149.33 Aligned_cols=275 Identities=14% Similarity=0.134 Sum_probs=172.0
Q ss_pred HHHHHHHHHHhCCCccceecCcHHH-HHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcCCCCC
Q 001989 635 NNLGEWLCTITGFDSFSLQPNAGAA-GEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKG 713 (985)
Q Consensus 635 ~e~~~~la~l~G~~~~~~~~~sGa~-a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~d~~g 713 (985)
.++++.+++.+|.+...+..+.|++ +. .++++ +. .++ +|+++++.++.+...++..|++++.+|++. .
T Consensus 43 ~~lr~~ia~~~~~~~~~I~it~Gs~~~l---~~~~~-~~-----~~~-~vv~~~P~y~~y~~~~~~~G~~v~~vp~~~-~ 111 (332)
T PRK06425 43 TDIEDQIKIYTQGLKIKVLIGPGLTHFI---YRLLS-YI-----NVG-NIIIVEPNFNEYKGYAFTHGIRISALPFNL-I 111 (332)
T ss_pred HHHHHHHHHHhCCCcceEEECCCHHHHH---HHHHH-Hh-----CCC-cEEEeCCChHHHHHHHHHcCCeEEEEeCCc-c
Confidence 4788999999999887766666655 33 22222 21 244 477767766667777889999999999864 3
Q ss_pred CCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccc--cCHHHHHHHHHHcCCEEEEEcccccccc-CCCCC----CccCCc
Q 001989 714 NINIEELRKAAEANRDNLSTLMVTYP-STHGVYE--EGIDEICKIIHDNGGQVYMDGANMNAQV-GLTSP----GYIGAD 785 (985)
Q Consensus 714 ~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~--~di~eI~~la~~~galliVD~a~~~~~~-~l~~p----g~~g~D 785 (985)
..|.+.+++ .++++|++++| |++|.+. ..+++|.++|+++|+++++|+++..-.. +.... ....--
T Consensus 112 ~~~~~~l~~------~~~k~v~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~iI~DE~Y~~~~~~~~~~~~~~~~~~~~v 185 (332)
T PRK06425 112 NNNPEILNN------YNFDLIFIVSPDNPLGNLISRDSLLTISEICRKKGALLFIDEAFIDFVPNRAEEDVLLNRSYGNV 185 (332)
T ss_pred cCcHHHHhh------cCCCEEEEeCCCCCcCCccCHHHHHHHHHHHHHcCCEEEEecchhccccccchhHHHHhccCCCE
Confidence 346554432 46788999999 4799986 2477788888999999999998732111 10000 111223
Q ss_pred EEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcH
Q 001989 786 VCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGS 865 (985)
Q Consensus 786 i~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~ 865 (985)
+++.|+.|+|++| |.++|++++++++.+.+.... ...+++ .. + ..++.....
T Consensus 186 i~~~SfSK~~~l~----GlRiGy~v~~~~li~~l~~~~--------------~~~~~~-----~~--~---~~~l~~~~~ 237 (332)
T PRK06425 186 IIGRSLTKILGIP----SLRIGYIATDDYNMKISRKIT--------------EPWSVC-----DP--A---IDFIRSIDL 237 (332)
T ss_pred EEEeecHHhcCCc----hhhheeeecCHHHHHHHHHcC--------------CCCccC-----HH--H---HHHHHHhhh
Confidence 5667888888654 788999999887665442110 001111 11 1 112222222
Q ss_pred HHH-HHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCC-CCC--
Q 001989 866 KGL-TEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTM-SWP-- 940 (985)
Q Consensus 866 eGl-~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~-~~p-- 940 (985)
+.+ ++..+...++++++.+.|++ ++.+. ..+.+. + +.+.++ +..++.+.|.++||.+... .|+
T Consensus 238 ~~~~~~~~~~~~~~r~~l~~~L~~~g~~~~-~~~~g~-f--~~~~~~--------~~~~~~~~l~~~gi~v~~~~~f~~~ 305 (332)
T PRK06425 238 DYVAKHSLDIMENERSYLINNLEAMGFRAA-GDPSAN-F--ITFMIP--------DAHDFYSYLLKNGILVRLLDDYECL 305 (332)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCEEC-CCCCce-E--EEEEcC--------CHHHHHHHHHHCCeEEEECCCCCCC
Confidence 222 34455567778889898986 44332 122222 2 234432 4688999999999987543 232
Q ss_pred CCCEEEEeccCCCCHHHHHHHHccCChhHHH
Q 001989 941 VPGTLMIEPTESESKSWTGIVMLSSPSEKKL 971 (985)
Q Consensus 941 ~~~~lris~t~~~t~eeId~~~~~~~l~~~~ 971 (985)
.++++||++ .+.+|.++ ++++|++++
T Consensus 306 ~~~~iRis~---~~~~~~~~--l~~al~~~~ 331 (332)
T PRK06425 306 GEQYIRIAI---RRRSFNIK--LVNALRNFL 331 (332)
T ss_pred CCCEEEEEe---CCHHHHHH--HHHHHHHHh
Confidence 247999998 78999999 778887654
|
|
| >PRK14809 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=8.5e-13 Score=151.14 Aligned_cols=277 Identities=14% Similarity=0.109 Sum_probs=169.1
Q ss_pred HHHHHHHHHHhCCCccceecCcHHH-HHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcCCC--
Q 001989 635 NNLGEWLCTITGFDSFSLQPNAGAA-GEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDA-- 711 (985)
Q Consensus 635 ~e~~~~la~l~G~~~~~~~~~sGa~-a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~d~-- 711 (985)
.++++.+++.++.+..++..+.|++ +. .++++.+. .++++|+++++.++.+...+...|.+++.+|++.
T Consensus 68 ~~lr~~ia~~~~~~~~~I~it~G~~~al---~~~~~~~~-----~~gd~V~v~~P~y~~~~~~~~~~g~~~~~~~l~~~~ 139 (357)
T PRK14809 68 ADLTAALADRWDVSPEQVWLANGGDGAL---DYLARAML-----DPGDTVLVPDPGFAYYGMSARYHHGEVREYPVSKAD 139 (357)
T ss_pred HHHHHHHHHHhCCCcceEEECCCHHHHH---HHHHHHhc-----CCCCEEEEeCCChHHHHHHHHHcCCeEEEEecccCc
Confidence 3677888888898877666655654 43 23333331 4788999998866655666778899999888853
Q ss_pred CCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccCHHHHHHHHHHc--CCEEEEEccccccccCCCCC----CccCC
Q 001989 712 KGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDN--GGQVYMDGANMNAQVGLTSP----GYIGA 784 (985)
Q Consensus 712 ~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~--galliVD~a~~~~~~~l~~p----g~~g~ 784 (985)
+..+|++++++.+ +++++|++++| |++|.+. +.+++.++++.. ++++++|+++.. +..-..+ ....-
T Consensus 140 ~~~~~~~~~~~~~----~~~k~i~l~~p~NPTG~~~-s~~~~~~l~~~~~~~~~iI~De~y~~-~~~~~~~~~~~~~~~~ 213 (357)
T PRK14809 140 DFEQTADTVLDAY----DGERIVYLTSPHNPTGSEI-PLDEVEALAERTDEETLVVVDEAYGE-FAERPSAVALVEERDD 213 (357)
T ss_pred CCCcCHHHHHHhh----cCCcEEEEeCCCCCCCcCC-CHHHHHHHHHhCccCcEEEEechhhh-ccCCchhHHHHhhCCC
Confidence 3567888877765 35788999999 5799997 677777766643 789999998742 1100000 00111
Q ss_pred cEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhc
Q 001989 785 DVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMG 864 (985)
Q Consensus 785 Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg 864 (985)
-+++.|+.|+|++| |.++|++++++++.+.+.... . +.+.+ .....++...+. .
T Consensus 214 vi~~~SfSK~~~~~----GlRiG~~~~~~~~~~~~~~~~--------------~--~~~~~----~~~~~~a~~~l~--~ 267 (357)
T PRK14809 214 VAVLRTFSKAYGLA----GLRLGYAVVPEEWADAYARVN--------------T--PFAAS----ELACRAGLAALD--D 267 (357)
T ss_pred EEEEecchhHhcCc----chhheeeecCHHHHHHHHHhC--------------C--CCCCC----HHHHHHHHHHhC--C
Confidence 25567888888654 678999999877655442110 0 11111 111122222221 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCC-CCCCCC
Q 001989 865 SKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTM-SWPVPG 943 (985)
Q Consensus 865 ~eGl~~~~~~~~~~a~~l~~~L~~g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~-~~p~~~ 943 (985)
.+-+++..+...++.+++.+.|... .++ +.+. + +.+++. +..++.+.|.++||.+... .|..++
T Consensus 268 ~~~~~~~~~~~~~~r~~l~~~L~~~---~~~-~~g~-f--~~~~~~--------~~~~~~~~l~~~gv~v~~g~~f~~~~ 332 (357)
T PRK14809 268 DEHVERTVETARWAREYIREELDAP---TWE-SAGN-F--VLAEVG--------DASAVAEAAQERGVIVRDCTSFGLPE 332 (357)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCc---cCC-CCCC-E--EEEECC--------CHHHHHHHHHHCCEEEEECccCCCCC
Confidence 2223343444555566677777541 121 2222 2 234432 4678999999999987543 233458
Q ss_pred EEEEeccCCCCHHHHHHHHccCChhHHH
Q 001989 944 TLMIEPTESESKSWTGIVMLSSPSEKKL 971 (985)
Q Consensus 944 ~lris~t~~~t~eeId~~~~~~~l~~~~ 971 (985)
++|+++. +.+++++ +++.|++++
T Consensus 333 ~iRls~~---~~~~~~~--~l~~L~~~l 355 (357)
T PRK14809 333 CIRITCG---TREETER--AVEVLNEVL 355 (357)
T ss_pred eEEEecC---CHHHHHH--HHHHHHHHh
Confidence 9999974 5789999 667777655
|
|
| >PLN02450 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.2e-12 Score=152.46 Aligned_cols=309 Identities=15% Similarity=0.152 Sum_probs=181.7
Q ss_pred hhHHHHHHHHHHHHHHHhC----CCccceecCcHHH-HHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHH-HCC
Q 001989 628 QGYQEMFNNLGEWLCTITG----FDSFSLQPNAGAA-GEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAA-MCG 701 (985)
Q Consensus 628 ~G~~~~~~e~~~~la~l~G----~~~~~~~~~sGa~-a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~-~~G 701 (985)
+|..++.+.+.+++.+.+| .+...+..++|++ +....+.++ ..+||.|+++++.++.+...+. ..|
T Consensus 86 ~G~~~LR~aiA~~l~~~~~~~~~v~~~~Iiit~Ga~~al~~l~~~l--------~~pGd~Vlv~~P~Y~~~~~~~~~~~g 157 (468)
T PLN02450 86 HGLPAFKNALAEFMSEIRGNKVTFDPNKLVLTAGATSANETLMFCL--------AEPGDAFLLPTPYYPGFDRDLKWRTG 157 (468)
T ss_pred CChHHHHHHHHHHHHHhhCCCCCcChHHeEEccChHHHHHHHHHHh--------CCCCCEEEECCCCCCchHHHHhhcCC
Confidence 5766666666666666555 3444565555554 443332222 1478999999998877766666 589
Q ss_pred cEEEEEcCC--CCCCCCHHHHHHHHHhc---CCCEEEEEEEcC-CCccccc--cCHHHHHHHHHHcCCEEEEEcccccc-
Q 001989 702 MKIVSVGTD--AKGNINIEELRKAAEAN---RDNLSTLMVTYP-STHGVYE--EGIDEICKIIHDNGGQVYMDGANMNA- 772 (985)
Q Consensus 702 ~~vv~v~~d--~~g~iD~e~L~~~i~~~---~~~t~~Vvv~~p-n~~G~i~--~di~eI~~la~~~galliVD~a~~~~- 772 (985)
++++.||++ .++.+|++++++++++. ..++++|++++| |++|.+. ..+++|.++|+++|+++++|.++...
T Consensus 158 ~~~v~v~~~~~~~~~~~~~~le~~~~~~~~~~~~~k~v~l~nP~NPTG~~~s~e~l~~ll~~a~~~~~~iI~DE~Y~~~~ 237 (468)
T PLN02450 158 VEIVPIHCSSSNGFQITESALEEAYQQAQKLNLKVKGVLITNPSNPLGTTTTRTELNLLVDFITAKNIHLISDEIYSGTV 237 (468)
T ss_pred cEEEEEecCCccCCcCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCCcccCHHHHHHHHHHHHHCCcEEEEEccccccc
Confidence 999999985 34678999999988631 237899999999 5799885 24778889999999999999987421
Q ss_pred ccC--CCCC----C--------ccCCcEEEeCCcccccccCCCCCCceEEEEEccc-ccCcCCCCccccCCCCCCCCCCC
Q 001989 773 QVG--LTSP----G--------YIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKH-LAPFLPSHPVVSTGGIPAPEKSQ 837 (985)
Q Consensus 773 ~~~--l~~p----g--------~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~-l~~~lp~~~~g~~~~~~~~~~~~ 837 (985)
..+ +... . ...-=+++.|+.|.|++| |.++|+++++++ +...+... .
T Consensus 238 f~~~~~~s~l~~~~~~~~~~~~~~~~vi~l~S~SK~~~l~----GlRiG~li~~~~~l~~~~~~~--------------~ 299 (468)
T PLN02450 238 FDSPGFVSVMEVLKDRKLENTDVSNRVHIVYSLSKDLGLP----GFRVGAIYSNDEMVVSAATKM--------------S 299 (468)
T ss_pred cCCCCcccHHHHhhhcccccCCCCCcEEEEEeccccCCCC----CccEEEEEECCHHHHHHHHHH--------------h
Confidence 111 1000 0 011125677888988654 789999998754 23222100 0
Q ss_pred CCCCCCCcchhhhHHHHHHHHHHHHh--cHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccc
Q 001989 838 PLGTIAAAPWGSALILPISYTYIAMM--GSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKN 914 (985)
Q Consensus 838 ~~~~i~s~~~g~~~~~~~a~a~l~~l--g~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~ 914 (985)
....+++ ..+. ++..+|..- ..+-+++..++..++.+.+.+.|++ ++.+ ..+.+..+ +.++++....
T Consensus 300 ~~~~~s~--~~Q~----a~~~~L~~~~~~~~~l~~~~~~l~~rr~~l~~~L~~~gi~~--~~~~~g~f--lwi~l~~~~~ 369 (468)
T PLN02450 300 SFGLVSS--QTQY----LLSALLSDKKFTKNYLEENQKRLKQRQKKLVSGLEAAGIKC--LKSNAGLF--CWVDMRHLLK 369 (468)
T ss_pred hcCCCCH--HHHH----HHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCcc--cCCCceEE--EEEEchHhcC
Confidence 0111111 1111 111222110 0012344455667777888888876 4332 22223322 2345431100
Q ss_pred cCCC-CHHHHHHHHHH-CCCccCC-CCC--CCCCEEEEeccCCCCHHHHHHHHccCChhHHHHhhc
Q 001989 915 TAGI-EPEDVAKRLMD-YGFHGPT-MSW--PVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRLK 975 (985)
Q Consensus 915 ~~g~-~~~~v~~~L~~-~Gi~~~~-~~~--p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~~ 975 (985)
.... ...++.++|.+ .|+.+.+ ..| +.++++||+++. .+++++++ .++.|++++++..
T Consensus 370 ~~~~~~~~~l~~~ll~~~gV~v~PG~~f~~~~~g~~Rl~f~~-~~~~~l~~--~l~ri~~~l~~~~ 432 (468)
T PLN02450 370 SNTFEAEMELWKKIVYEVKLNISPGSSCHCTEPGWFRVCFAN-MSEETLDL--AMKRLKSFVESDS 432 (468)
T ss_pred cCCchHHHHHHHHHHHhCCEEEeCccccCCCCCCEEEEEecC-CCHHHHHH--HHHHHHHHHHhcc
Confidence 0011 12456667654 7998643 222 235899999976 45788888 7788888876554
|
|
| >KOG1383 consensus Glutamate decarboxylase/sphingosine phosphate lyase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.7e-12 Score=143.74 Aligned_cols=352 Identities=15% Similarity=0.204 Sum_probs=224.3
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhcCCCccc--eecCCCCCCCCCcHHHHHHHHhCCccccccCCChhhHhhhHHHHHHHH
Q 001989 139 MKFSKFDEGLTESQMIEHMQKLASMNKVYK--SFIGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNF 216 (985)
Q Consensus 139 ~~lp~~~~~~se~e~~~~~~~l~~~n~~~~--~~lG~g~y~~~~p~~v~~~i~~~~~~~t~~~pyq~e~sqg~l~~i~e~ 216 (985)
..|| ..+++..++++.+.+....+..+. --.|..++. ++... .+.. +-+.-|+|..+.+.++.-+.-.|.
T Consensus 54 ~~lP--~~gl~~d~v~~~i~~~~~ld~~~~~~~vS~~v~~~---~~~~~-~l~~--~~~~k~N~l~~d~fp~~~~~e~~~ 125 (491)
T KOG1383|consen 54 FTLP--SKGLPKDAVLELINDELMLDGNPRLGLASGVVYWG---EPELD-KLIM--EAYNKFNPLHPDEFPVVRKLEAEC 125 (491)
T ss_pred ecCC--CCCCCHHHHHHHHHHHhccCCCcccCeeeEEEecC---Ccchh-hHHH--HHHhhcCccCccccchhHHHHHHH
Confidence 4577 578999999999988765543221 122444433 22221 2221 113444888888999999999999
Q ss_pred HHHHHHhcCCCCc-ceeeccchHHHHHHHHHHhhhhc----C-CCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCch-
Q 001989 217 QTMIADLTGLPMS-NASLLDEGTAAAEAMAMCNNIQK----G-KKKTFIIASNCHPQTIDICITRADGFDIKVVVSDLK- 289 (985)
Q Consensus 217 q~~ia~L~g~~~~-~~sl~~~~ta~~ea~~~a~~~~~----~-~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~~- 289 (985)
-.|+|.|++.+.+ ..+.+.|+|.++.++..+.+..+ + ....|+++.++|.++-. +++.++++++.++++
T Consensus 126 Vnm~~~L~~~~~~~~g~~t~G~Ses~l~~~k~~~~~r~~~k~I~~p~iv~~~~v~~a~eK----~a~yf~v~l~~V~~~~ 201 (491)
T KOG1383|consen 126 VNMIANLFNAPSDSCGCGTVGGSESGLAAKKSYRNRRKAQKGIDKPNIVTPQNVHAAFEK----AARYFEVELREVPLDE 201 (491)
T ss_pred HHHHHHHhcCCccccCccccccchHHHHHHHHHHHHHHhccCCCCccccchHHHHHHHHH----HHhhEEEEEEeeeccc
Confidence 9999999998753 45566777754333332222111 1 23456777777765444 456689999988764
Q ss_pred -----h---hhc-cCCCEeEEEEEcCC-CCeeeccHHHHHHHHHh-CCcEEEEEecCccccC---CCCCCcccce-----
Q 001989 290 -----D---IDY-KSGDVCGVLVQYPG-TEGEVLDYGDFIKNAHA-NGVKVVMATDLLALTI---LKPPGELGAD----- 350 (985)
Q Consensus 290 -----~---l~~-l~~~t~~V~v~~pn-~~G~v~di~~I~~~a~~-~galliV~a~~~~lg~---l~~~~~~GaD----- 350 (985)
| +.+ ++++|.+|+...|| ++|.++|+++|.++.-+ ++..++|++.+-++-. ...+.+||+-
T Consensus 202 ~~~~~D~~k~~~~i~eNti~lv~~~~~~p~G~~e~ve~l~~l~~e~w~ipiHvDa~~GgFi~p~~~~~~~~fdFr~p~V~ 281 (491)
T KOG1383|consen 202 GDYRVDPGKVVRMIDENTIMLVGSLPNFPTGEIEDVEKLADLLLEIWDIPIHVDACLGGFINPAGYLNEEEFDFRVPGVT 281 (491)
T ss_pred cceEecHHHHHHHhccceEEEEEEcCCCCccchhhHHHHHHHHHHHhCCceeecccCccccccccccCccccccCCCCce
Confidence 2 334 78999999999986 58999999999999999 9999999653322211 1122344432
Q ss_pred EEEecCccccccCCCCCCcEE-EEEEchhhHhcCCCceeeeeecCCC-Cc-ceeeecccccccccccccCCCccchhHHH
Q 001989 351 IVVGSAQRFGVPMGYGGPHAA-FLATSQEYKRMMPGRIVGVSIDSSG-KP-ALRVAMQTREQHIRRDKATSNICTAQALL 427 (985)
Q Consensus 351 i~v~s~k~lg~P~~~GGP~~G-~l~~~~~~~~~lp~~~vG~t~d~~g-~~-~~~l~l~tre~~irre~atsni~t~~~l~ 427 (985)
-.-.+++++|.-+ +|++ .++..++++ |--++-- .|-.| .+ .+.+..+ ++-+
T Consensus 282 Sisa~~HKYGl~~----~G~~~vl~r~k~~~---~~q~~~~-~~w~Gg~y~s~TlngS---------R~g~--------- 335 (491)
T KOG1383|consen 282 SISADGHKYGLAP----AGSSWVLYRNKELL---PHQLFFH-TDWLGGIYASPTLNGS---------RPGS--------- 335 (491)
T ss_pred eEeeccceeeeee----cCcEEEEEcccccc---cceEEEe-ccccCccccCcccccC---------Cccc---------
Confidence 2233346665421 2344 344444432 2222110 11111 11 1222221 1111
Q ss_pred HHHHHHH--HHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCCCcceEEEecCC--HHHHHHHHHHcCceeeee-
Q 001989 428 ANMAAMY--AVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDTVKVKCAD--AHAIASAAYKIEMNLRVV- 502 (985)
Q Consensus 428 a~~aa~~--l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~--~~~v~~~L~~~GI~~~~~- 502 (985)
..++.| |..+|.+|+.+..+++.+.+.+|++++++++++.+++.|...-+.+.... -.++.+.|+++||.+..+
T Consensus 336 -~va~~wa~~~~lG~eGY~~~~~~ive~~~~l~egie~i~~i~i~gkp~vs~~~~~s~~~~i~elsd~l~~~GW~lnalq 414 (491)
T KOG1383|consen 336 -QVAAQWAALMSLGEEGYRENTQNIVETARKLREGIENIKGIKIVGKPLVSFILFGSNDVNIFELSDLLRKKGWILNALQ 414 (491)
T ss_pred -HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhccccceecCCCcEEEEEccCCccchhhhhHHHHhcCcCccccC
Confidence 223333 57889999999999999999999999999966999876643223333333 789999999999999776
Q ss_pred cCCeEEEEeccCCCHHHH-HHHHHHHhC
Q 001989 503 DSNTVTASFDETTTLEDV-DKLFIVFAG 529 (985)
Q Consensus 503 ~~~~lris~t~~~t~edI-d~li~aL~~ 529 (985)
.|.++.+|++-.++++++ |+|+..++.
T Consensus 415 ~P~a~Hi~vt~~~~~~~~A~~~v~Di~~ 442 (491)
T KOG1383|consen 415 FPAAIHICVTRVHAREDVADRFVADIRK 442 (491)
T ss_pred CCCceEEEEEeeeccHHHHHHHHHHHHH
Confidence 367999999999999985 777777764
|
|
| >PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.53 E-value=7.9e-13 Score=153.05 Aligned_cols=144 Identities=12% Similarity=0.066 Sum_probs=115.7
Q ss_pred HHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHH----HHHCCcEEEEEcC
Q 001989 634 FNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPAT----AAMCGMKIVSVGT 709 (985)
Q Consensus 634 ~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~----a~~~G~~vv~v~~ 709 (985)
..++++.++++.|...+ +.++||+.|+.++++++. .+||+||++...++..... ....|+++++++.
T Consensus 63 v~~lE~~la~leg~~~a-v~~~SG~aAi~~al~all--------~~GD~VI~~~~~Y~~T~~~~~~~l~~~Gi~v~~vd~ 133 (432)
T PRK06702 63 LAAFEQKLAELEGGVGA-VATASGQAAIMLAVLNIC--------SSGDHLLCSSTVYGGTFNLFGVSLRKLGIDVTFFNP 133 (432)
T ss_pred HHHHHHHHHHHhCCCcE-EEECCHHHHHHHHHHHhc--------CCCCEEEECCCchHHHHHHHHHHHHHCCCEEEEECC
Confidence 45788999999998765 557788888765655442 4789999988756533333 4678999999865
Q ss_pred CCCCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCccCCcEEE
Q 001989 710 DAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIGADVCH 788 (985)
Q Consensus 710 d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~g~Di~~ 788 (985)
.+|+++++++|+ ++|++|++++| |+++.+. |+++|+++||++|+++++|.+.. ...+.+|-+.|+||++
T Consensus 134 ----~~d~~~l~~~I~---~~Tk~I~~e~pgnP~~~v~-Di~~I~~iA~~~gi~livD~T~~--tP~~~~pl~~GADIvv 203 (432)
T PRK06702 134 ----NLTADEIVALAN---DKTKLVYAESLGNPAMNVL-NFKEFSDAAKELEVPFIVDNTLA--TPYLCQAFEHGANIIV 203 (432)
T ss_pred ----CCCHHHHHHhCC---cCCeEEEEEcCCCcccccc-CHHHHHHHHHHcCCEEEEECCCC--chhhCChhhcCCCEEE
Confidence 369999999998 89999999998 5788887 89999999999999999998753 3345678889999999
Q ss_pred eCCccccc
Q 001989 789 LNLHKTFC 796 (985)
Q Consensus 789 ~s~hK~l~ 796 (985)
.|..|+++
T Consensus 204 ~S~TKy~~ 211 (432)
T PRK06702 204 HSTTKYID 211 (432)
T ss_pred EccccccC
Confidence 99999985
|
|
| >PRK08247 cystathionine gamma-synthase; Reviewed | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.6e-12 Score=149.07 Aligned_cols=211 Identities=19% Similarity=0.162 Sum_probs=142.9
Q ss_pred HHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccH----HHHHHCCcEEEEEcC
Q 001989 634 FNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNP----ATAAMCGMKIVSVGT 709 (985)
Q Consensus 634 ~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~----~~a~~~G~~vv~v~~ 709 (985)
..++++.++++.|.+.+ +.++||++|..++ +++ . .++++||+++..++... ..+...|++++.++.
T Consensus 54 ~~~le~~la~l~g~~~~-~~~~sG~~ai~~~-~~l---l-----~~Gd~Vl~~~~~y~~t~~~~~~~~~~~G~~v~~vd~ 123 (366)
T PRK08247 54 RGVLEQAIADLEGGDQG-FACSSGMAAIQLV-MSL---F-----RSGDELIVSSDLYGGTYRLFEEHWKKWNVRFVYVNT 123 (366)
T ss_pred HHHHHHHHHHHhCCCcE-EEEcCHHHHHHHH-HHH---h-----CCCCEEEEecCCcCcHHHHHHHHhhccCceEEEECC
Confidence 45789999999999875 6667787766432 222 1 36789999877665432 234568999999886
Q ss_pred CCCCCCCHHHHHHHHHhcCCCEEEEEEEcCC-CccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCccCCcEEE
Q 001989 710 DAKGNINIEELRKAAEANRDNLSTLMVTYPS-THGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIGADVCH 788 (985)
Q Consensus 710 d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~pn-~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~g~Di~~ 788 (985)
.|+++++++++ ++|++|++++|+ ++|.+. |+++|+++||++|+++++|.++..+ .+..|...|+|+++
T Consensus 124 -----~d~~~l~~~i~---~~tklv~le~P~NP~~~~~-dl~~I~~la~~~g~~lIvD~t~~~~--~~~~p~~~g~di~i 192 (366)
T PRK08247 124 -----ASLKAIEQAIT---PNTKAIFIETPTNPLMQET-DIAAIAKIAKKHGLLLIVDNTFYTP--VLQRPLEEGADIVI 192 (366)
T ss_pred -----CCHHHHHHhcc---cCceEEEEECCCCCCCcHH-HHHHHHHHHHHcCCEEEEECCCccc--cccCchhcCCcEEE
Confidence 38999999997 789999999995 688887 8999999999999999999987422 23456667899999
Q ss_pred eCCcccccccCCCCCCceEEEEEc-ccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHH
Q 001989 789 LNLHKTFCIPHGGGGPGMGPIGVK-KHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKG 867 (985)
Q Consensus 789 ~s~hK~l~~p~g~GGPg~G~i~~~-~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eG 867 (985)
.|++|+++.+ ++-.+|+++++ +++...+... + ...+...+ +. .+|..+. +-+.
T Consensus 193 ~S~sK~~~g~---~d~~~G~iv~~~~~l~~~~~~~------------~-~~~g~~~s-----~~---~a~l~~~--~l~t 246 (366)
T PRK08247 193 HSATKYLGGH---NDVLAGLVVAKGQELCERLAYY------------Q-NAAGAVLS-----PF---DSWLLIR--GMKT 246 (366)
T ss_pred eecceeccCC---CceeeeEEecChHHHHHHHHHH------------H-HhcCCCCC-----hH---HHHHHHh--ccCc
Confidence 9999998511 22246777775 4443322100 0 00111111 11 1233333 3334
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCC
Q 001989 868 LTEASKIAILNANYMAKRLEKHYP 891 (985)
Q Consensus 868 l~~~~~~~~~~a~~l~~~L~~g~~ 891 (985)
+..+.++..++++.+.+.|++..+
T Consensus 247 l~~r~~~~~~~a~~l~~~L~~~p~ 270 (366)
T PRK08247 247 LALRMRQHEENAKAIAAFLNEQPG 270 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCC
Confidence 555666778899999999987433
|
|
| >KOG0053 consensus Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.52 E-value=8.6e-13 Score=146.75 Aligned_cols=161 Identities=22% Similarity=0.200 Sum_probs=130.9
Q ss_pred HHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCchhhhc
Q 001989 214 LNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDLKDIDY 293 (985)
Q Consensus 214 ~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~~~l~~ 293 (985)
..+++.+++|.|++. +.++++|.+++.+++..+. ..+++||.....+..+...++.....+|++...+|++++++
T Consensus 80 ~~le~~iaal~ga~~--~l~fsSGmaA~~~al~~L~---~~g~~iV~~~~~Y~gT~~~l~~~~~~~gie~~~vd~~~~~~ 154 (409)
T KOG0053|consen 80 DVLESGIAALEGAAH--ALLFSSGMAAITVALLHLL---PAGDHIVATGDVYGGTLRILRKFLPKFGGEGDFVDVDDLKK 154 (409)
T ss_pred HHHHHHHHHHhCCce--EEEecccHHHHHHHHHHhc---CCCCcEEEeCCCcccHHHHHHHHHHHhCceeeeechhhHHH
Confidence 346689999999876 6788899877777666543 37899999999999999998888888999999999876653
Q ss_pred ----cCCCEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCCCCCcccceEEEecC-ccccccCCCCC
Q 001989 294 ----KSGDVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKPPGELGADIVVGSA-QRFGVPMGYGG 367 (985)
Q Consensus 294 ----l~~~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~~~~~~GaDi~v~s~-k~lg~P~~~GG 367 (985)
+.++|++|++..| |++..+.||++|+++||++|++++|| +.++-++..+|-.+|||||+.|+ |.|++.-..
T Consensus 155 ~~~~i~~~t~~V~~ESPsNPll~v~DI~~l~~la~~~g~~vvVD-nTf~~p~~~~pL~lGADIV~hSaTKyi~Ghsdv-- 231 (409)
T KOG0053|consen 155 ILKAIKENTKAVFLESPSNPLLKVPDIEKLARLAHKYGFLVVVD-NTFGSPYNQDPLPLGADIVVHSATKYIGGHSDV-- 231 (409)
T ss_pred HHHhhccCceEEEEECCCCCccccccHHHHHHHHhhCCCEEEEe-CCcCcccccChhhcCCCEEEEeeeeeecCCcce--
Confidence 6788999999998 89999999999999999999999995 56666677889999999999998 888754321
Q ss_pred CcEEEEEEc-hhhHhcC
Q 001989 368 PHAAFLATS-QEYKRMM 383 (985)
Q Consensus 368 P~~G~l~~~-~~~~~~l 383 (985)
-+|.++++ +++.+++
T Consensus 232 -i~G~iv~n~~~~~~~l 247 (409)
T KOG0053|consen 232 -IGGSVVLNSEELASRL 247 (409)
T ss_pred -eeeEEecCcHHHHHHH
Confidence 23566665 5555544
|
|
| >PRK06225 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=1e-11 Score=143.43 Aligned_cols=306 Identities=11% Similarity=0.092 Sum_probs=184.1
Q ss_pred cCCCCCCCCCcHHHHHHHHhC--CccccccCCChhhHhhhHHHHHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHh
Q 001989 171 IGMGYYNTHVPPVILRNIMEN--PAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCN 248 (985)
Q Consensus 171 lG~g~y~~~~p~~v~~~i~~~--~~~~t~~~pyq~e~sqg~l~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~ 248 (985)
+|.|..+...|+.+.+++..- ...+..|.+. +| ..++++.+|+++|.++.++.+++|+|.++..++.++
T Consensus 33 l~~~~~~~~~~~~~~~a~~~~~~~~~~~~y~~~-----~g----~~~lr~~ia~~l~~~~~~v~~~~g~t~al~~~~~~~ 103 (380)
T PRK06225 33 MGQNTNHLGPHEEVREAMIRCIEEGEYCKYPPP-----EG----FPELRELILKDLGLDDDEALITAGATESLYLVMRAF 103 (380)
T ss_pred ccCCCCCCCCCHHHHHHHHHHHhcCCCCCCCCC-----cc----hHHHHHHHHHhcCCCCCcEEEeCCHHHHHHHHHHHh
Confidence 456655555666665443321 1222333221 12 456788999999999999999999997766655443
Q ss_pred hhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc-----------hhhhc-cCCCEeEEEEEcC-CCCeeec--
Q 001989 249 NIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL-----------KDIDY-KSGDVCGVLVQYP-GTEGEVL-- 313 (985)
Q Consensus 249 ~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~-----------~~l~~-l~~~t~~V~v~~p-n~~G~v~-- 313 (985)
. ++||+|++++..|......++ ..|.+++.++. +++++ +++++++|++.+| |.+|.+.
T Consensus 104 -~--~~gd~vl~~~p~y~~~~~~~~----~~g~~~~~v~~~~~~~~~~~d~~~l~~~~~~~~~~v~l~~p~NptG~~~~~ 176 (380)
T PRK06225 104 -L--SPGDNAVTPDPGYLIIDNFAS----RFGAEVIEVPIYSEECNYKLTPELVKENMDENTRLIYLIDPLNPLGSSYTE 176 (380)
T ss_pred -c--CCCCEEEEcCCCCcchHHHHH----HhCceEEeeccccccCCccCCHHHHHhhcCCCceEEEEeCCCCCCCcCCCH
Confidence 1 378999999988876554443 45777776653 23444 6778999988888 6899864
Q ss_pred -cHHHHHHHHHhCCcEEEEEecCc--cccCCC-CCCcccceEEEecC-ccccccCCCCCCcEEEEEEchhhHhcCCCcee
Q 001989 314 -DYGDFIKNAHANGVKVVMATDLL--ALTILK-PPGELGADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIV 388 (985)
Q Consensus 314 -di~~I~~~a~~~galliV~a~~~--~lg~l~-~~~~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~v 388 (985)
++++|+++|+++|+++++|.-.. ..+... ........+++.+. |.|+.| |-.+|++++++++++.+....
T Consensus 177 ~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~----G~RiG~i~~~~~l~~~~~~~~- 251 (380)
T PRK06225 177 EEIKEFAEIARDNDAFLLHDCTYRDFAREHTLAAEYAPEHTVTSYSFSKIFGMA----GLRIGAVVATPDLIEVVKSIV- 251 (380)
T ss_pred HHHHHHHHHHHHCCcEEEEehhHHHHhccCCchhhcCCCCEEEEeechhhcCCc----cceeEEEecCHHHHHHHHHHH-
Confidence 69999999999999999953110 011000 00011345677775 877432 334699999888776552100
Q ss_pred eeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeE
Q 001989 389 GVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVE 468 (985)
Q Consensus 389 G~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~ 468 (985)
+...+++...... +...+.. ..+-++++.+...++.+++.+.|+++.++.
T Consensus 252 ----------------------------~~~~~~~~~~~~~-a~~~l~~-~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~ 301 (380)
T PRK06225 252 ----------------------------INDLGTNVIAQEA-AIAGLKV-KDEWIDRIRRTTFKNQKLIKEAVDEIEGVF 301 (380)
T ss_pred ----------------------------hcccCCCHHHHHH-HHHHHhc-chHHHHHHHHHHHHHHHHHHHHHHhCcCCc
Confidence 0011122211111 1111111 112234555555666778888888752243
Q ss_pred Ec-CCCCcceEEEecC----CHHHHHHHHHHcCceeeee-------cCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 469 VQ-GLPFFDTVKVKCA----DAHAIASAAYKIEMNLRVV-------DSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 469 ~~-~~~~~~~~~~~~~----~~~~v~~~L~~~GI~~~~~-------~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
+. .++...-+.+..+ +..++.++|.++||.+... ..+.+|+++. .++||+++++++|..
T Consensus 302 ~~~~~~~g~~~~~~~~~~~~~~~~l~~~l~~~gi~v~~g~~~~~~~~~~~iR~s~~--~~~e~l~~~~~~l~~ 372 (380)
T PRK06225 302 LPVYPSHGNMMVIDISEAGIDPEDLVEYLLERKIFVRQGTYTSKRFGDRYIRVSFS--IPREQVEVFCEEFPD 372 (380)
T ss_pred cccCCCCCeEEEEEcccccCCHHHHHHHHHHCCEEEcCCcccCcCCCCceEEEEeC--CCHHHHHHHHHHHHH
Confidence 21 1111122333332 2788999999999987542 1358999986 378999999999974
|
|
| >PLN02452 phosphoserine transaminase | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.9e-12 Score=147.33 Aligned_cols=281 Identities=13% Similarity=0.056 Sum_probs=183.2
Q ss_pred HHHHHHHHHHHHHhcCCCCc--ceeeccchHHHHHHHHHHhhhhcCCCCEEE-EcCCCChh-HHHHHHHhhcCCCeEEEE
Q 001989 210 LESLLNFQTMIADLTGLPMS--NASLLDEGTAAAEAMAMCNNIQKGKKKTFI-IASNCHPQ-TIDICITRADGFDIKVVV 285 (985)
Q Consensus 210 l~~i~e~q~~ia~L~g~~~~--~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vl-v~~~~H~s-~~~~~~~~a~~~gi~v~~ 285 (985)
.+.+.+.++.+.+|++.+.. -+.+..|||.++|++.+.+- . ++++++ +..+.+.. ..+. ++.+|...+.
T Consensus 51 ~~i~~~~~~~L~~l~~~p~~y~v~~l~Gsgt~~~ea~~~nl~-~--~~~~~l~~~~G~fg~r~~~~----a~~~g~~~~~ 123 (365)
T PLN02452 51 LSIIQKAEADLRELLDIPDNYEVLFLQGGASTQFAAIPLNLC-K--PGDKADFVVTGSWSKKAAKE----AKKYCKTNVI 123 (365)
T ss_pred HHHHHHHHHHHHHHhCCCCCceEEEEeCccHHHHHHHHHhcC-C--CCCeEEEEECCHHHHHHHHH----HHHhCCCcEE
Confidence 47888899999999998643 24455888999999888652 2 567664 55555533 2233 3344543333
Q ss_pred eC--c------hhhhc--cCCCEeEEEEEcC-CCCee-eccHHHHHHHHHhCCcEEEEEecCccccCC-CCCCcccceEE
Q 001989 286 SD--L------KDIDY--KSGDVCGVLVQYP-GTEGE-VLDYGDFIKNAHANGVKVVMATDLLALTIL-KPPGELGADIV 352 (985)
Q Consensus 286 v~--~------~~l~~--l~~~t~~V~v~~p-n~~G~-v~di~~I~~~a~~~galliV~a~~~~lg~l-~~~~~~GaDi~ 352 (985)
.. . -++++ .+++.+.|.+++. +.+|+ +.|++++++ ++++||+ ..++|.. .+..+||+|+
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~hnETstGv~~~~~~~i~~------~~lvVDa-~Ss~g~~pidv~~~~v~~- 195 (365)
T PLN02452 124 ASGKDEKYTKIPSVSEWELTPDAKFVHICANETIHGVEFKDYPDVGN------VPLVADM-SSNFLSKPVDVSKYGVIY- 195 (365)
T ss_pred EecCCCCCCCCCChHHcCCCCCCcEEEECCCCCCCcEecCcccccCC------CeEEEEC-CccccCcccCHHHcCEEE-
Confidence 21 1 12222 3556778877665 77999 589988863 7888854 3344433 3557899877
Q ss_pred EecCccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHH
Q 001989 353 VGSAQRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAA 432 (985)
Q Consensus 353 v~s~k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa 432 (985)
.++||. +|.||+|++++|+++++++++.. + ..+++....++ ..-..|+|+ ..++++.++
T Consensus 196 -~saqK~-----lGP~Gl~~v~vr~~~l~~~~~~~----------~-~~~~~~~~~~~-~s~~~TP~v---~~i~~l~~a 254 (365)
T PLN02452 196 -AGAQKN-----VGPSGVTIVIIRKDLIGNARPIT----------P-GMLDYKIHAEN-DSLYNTPPC---FGIYMCGLV 254 (365)
T ss_pred -Eecccc-----cCCCCeEEEEEcHHHHhhcccCC----------C-chhhHHHHHhc-CCccCChhH---HHHHHHHHH
Confidence 467553 23468999999999988764311 1 12222111111 011245555 677777777
Q ss_pred HHHHHhCcc-hHHHHHHHHHHHHHHHHHHHhcC-CCe-EE-cCC--CCcceEEEecCC---HHHHHHHHHHcCceeee--
Q 001989 433 MYAVYHGPE-GLKTIAQRVHGLAGTFALGLKKL-GTV-EV-QGL--PFFDTVKVKCAD---AHAIASAAYKIEMNLRV-- 501 (985)
Q Consensus 433 ~~l~~~g~~-Gl~~i~~~~~~~a~~l~~~L~~~-g~~-~~-~~~--~~~~~~~~~~~~---~~~v~~~L~~~GI~~~~-- 501 (985)
+ .++..+ |++++.+++.+++++|++.|++. | + .. .++ .....++|..++ ..++.+.+.++|+..-.
T Consensus 255 L--~~l~~~gGl~~~~~r~~~~a~~l~~~l~~~~G-~y~~~~~~~~rs~~~vsF~~~~~~~~~~f~~~~~~~g~~~~~G~ 331 (365)
T PLN02452 255 F--EDLLAQGGLKAMEKRNIRKADLLYDAIDESNG-FYVCPVEKSVRSLMNVPFTLGGSELEAEFVKEAAKAGMVQLKGH 331 (365)
T ss_pred H--HHHHHccCHHHHHHHHHHHHHHHHHHHHhCCC-cccCCCChHHhCCeEEEEEcCCchhHHHHHHHHHHCCCcccCCc
Confidence 6 666565 89999999999999999999986 5 6 21 111 112246677665 77889999999996522
Q ss_pred ecCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 502 VDSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 502 ~~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
..-+.+|+|.--..+.|++++|++.+++
T Consensus 332 r~~gg~R~s~yna~~~~~v~~L~~~m~~ 359 (365)
T PLN02452 332 RSVGGMRASIYNAMPLAGVEKLVAFMKD 359 (365)
T ss_pred cccCceEEECcCCCCHHHHHHHHHHHHH
Confidence 1123499999989999999999999874
|
|
| >PRK07269 cystathionine gamma-synthase; Reviewed | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.3e-12 Score=149.34 Aligned_cols=207 Identities=19% Similarity=0.152 Sum_probs=137.9
Q ss_pred HHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHH----HCCcEEEEEcC
Q 001989 634 FNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAA----MCGMKIVSVGT 709 (985)
Q Consensus 634 ~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~----~~G~~vv~v~~ 709 (985)
..++++.++++.|.+.+ +.++||.+|+..++. + + ++||+||++...+|....... ..++++.+
T Consensus 56 ~~~le~~lA~leg~~~~-v~~~sG~aAi~~~l~-~--l------~~GD~VI~~~~~yg~~~~~~~~~~~~~~~~~~~--- 122 (364)
T PRK07269 56 RAKLEETLAAIESADYA-LATSSGMSAIVLAFS-V--F------PVGSKVVAVRDLYGGSFRWFNQQEKEGRFHFTY--- 122 (364)
T ss_pred HHHHHHHHHHHhCCCeE-EEeCCHHHHHHHHHH-H--h------CCCCEEEEecCCcCchHHHHHHHHhcCcEEEEe---
Confidence 45788999999987654 556778777644332 1 1 367899998776665444321 11333222
Q ss_pred CCCCCCCHHHHHHHHHhcCCCEEEEEEEcCC-CccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCccCCcEEE
Q 001989 710 DAKGNINIEELRKAAEANRDNLSTLMVTYPS-THGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIGADVCH 788 (985)
Q Consensus 710 d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~pn-~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~g~Di~~ 788 (985)
..|+++++++|+ ++|++|++++|+ ++|.+. |+++|+++||++|+++++|.++.. .....|-..|+|+++
T Consensus 123 ----~~d~~~l~~~i~---~~TklV~lesP~NPtg~~~-di~~I~~la~~~gi~vvvD~t~~~--~~~~~pl~~gaDivv 192 (364)
T PRK07269 123 ----ANTEEELIAAIE---EDTDIVYIETPTNPLMVEF-DIEKVAKLAHAKGAKVIVDNTFYS--PIYQRPIELGADIVL 192 (364)
T ss_pred ----cCCHHHHHHhcC---cCceEEEEECCCCCCCeee-CHHHHHHHHHHcCCEEEEECCCcc--cccCCchhhCCcEEE
Confidence 248999999998 899999999995 689887 999999999999999999998642 223466678999999
Q ss_pred eCCcccccccCCCCCCceEEEEEc-ccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHH
Q 001989 789 LNLHKTFCIPHGGGGPGMGPIGVK-KHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKG 867 (985)
Q Consensus 789 ~s~hK~l~~p~g~GGPg~G~i~~~-~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eG 867 (985)
+|++|+++.+ |.--+|+++++ +++.+.+.. . + ...+...+ + ..|| +...|-+.
T Consensus 193 ~S~tK~l~g~---~d~~gG~v~~~~~~l~~~~~~-~-----------~-~~~G~~~s-----~---~~a~--l~~~~L~t 246 (364)
T PRK07269 193 HSATKYLSGH---NDVLAGVVVTNDLELYEKLFY-N-----------L-NTTGAVLS-----P---FDSY--LLMRGLKT 246 (364)
T ss_pred ecCceeccCC---CcccceEEEeCcHHHHHHHHH-H-----------H-HHhCCCCC-----H---HHHH--HHHcCCCc
Confidence 9999999521 11125677775 344333310 0 0 00111111 1 1223 34444456
Q ss_pred HHHHHHHHHHHHHHHHHHhhcc
Q 001989 868 LTEASKIAILNANYMAKRLEKH 889 (985)
Q Consensus 868 l~~~~~~~~~~a~~l~~~L~~g 889 (985)
+..+.++..+++.++++.|++.
T Consensus 247 L~~r~~~~~~na~~~a~~L~~~ 268 (364)
T PRK07269 247 LSLRMERSTANAQEVVAFLKKS 268 (364)
T ss_pred HHHHHHHHHHHHHHHHHHHHhC
Confidence 7778888999999999999863
|
|
| >PRK09105 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=7.4e-12 Score=143.96 Aligned_cols=297 Identities=13% Similarity=0.096 Sum_probs=187.9
Q ss_pred ecCCCCCCCCCcHHHHHHHHhCCccccccCCChhhHhhhHHHHHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhh
Q 001989 170 FIGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNN 249 (985)
Q Consensus 170 ~lG~g~y~~~~p~~v~~~i~~~~~~~t~~~pyq~e~sqg~l~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~ 249 (985)
+++.|..+...|+.+.+++...- .....|.+. . ..++++.+|+.+|.++.++.+++|++.++..++.++
T Consensus 47 ~l~~~~~~~~~~~~~~~a~~~~~---~~~~~Y~~~------~-~~~Lr~aia~~~~v~~e~I~it~Gs~~ai~~~~~~l- 115 (370)
T PRK09105 47 FLNANECPLGPSPAARDAAARSA---ALSGRYDLE------L-EDDLRTLFAAQEGLPADHVMAYAGSSEPLNYAVLAF- 115 (370)
T ss_pred EecCCCCCCCCCHHHHHHHHHHH---HHhcCCCCc------h-HHHHHHHHHHHhCcChhhEEEcCChHHHHHHHHHHH-
Confidence 45555545556666654544321 111123211 1 446778899999999999999999997776655544
Q ss_pred hhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCch--------hhhccCCCEeEEEEEcC-CCCeeeccHHHHHH
Q 001989 250 IQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDLK--------DIDYKSGDVCGVLVQYP-GTEGEVLDYGDFIK 320 (985)
Q Consensus 250 ~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~~--------~l~~l~~~t~~V~v~~p-n~~G~v~di~~I~~ 320 (985)
. ++||+|++++-.|+.+...++ ..|++++.++.+ ++++..+++++|++.+| |.+|.+.+.++|.+
T Consensus 116 ~--~~gd~Vli~~P~y~~~~~~~~----~~g~~~~~v~~~~~~~~d~~~l~~~~~~~~~v~l~nP~NPTG~~~~~~~l~~ 189 (370)
T PRK09105 116 T--SPTAGLVTADPTYEAGWRAAD----AQGAPVAKVPLRADGAHDVKAMLAADPNAGLIYICNPNNPTGTVTPRADIEW 189 (370)
T ss_pred c--CCCCEEEEeCCChHHHHHHHH----HcCCeEEEecCCCCCCCCHHHHHhcCCCCCEEEEeCCCCCCCcCcCHHHHHH
Confidence 2 378999999999998877654 468888887552 23222356888999998 78999998888887
Q ss_pred HHHh--CCcEEEEEecCccccCCCCCC---cccceEEEe-cC-ccccccCCCCCCc--EEEEEEchhhHhcCCCceeeee
Q 001989 321 NAHA--NGVKVVMATDLLALTILKPPG---ELGADIVVG-SA-QRFGVPMGYGGPH--AAFLATSQEYKRMMPGRIVGVS 391 (985)
Q Consensus 321 ~a~~--~galliV~a~~~~lg~l~~~~---~~GaDi~v~-s~-k~lg~P~~~GGP~--~G~l~~~~~~~~~lp~~~vG~t 391 (985)
+++. +|+++++|.-...+....+.. +.+-++++. |. |.||. || +|++++++++++.+-.
T Consensus 190 l~~~~~~~~~lIvDEaY~~f~~~~s~~~~~~~~~~vi~~~SfSK~~g~------~GlRiG~~v~~~~~i~~l~~------ 257 (370)
T PRK09105 190 LLANKPAGSVLLVDEAYIHFSDAPSVVDLVAQRKDLIVLRTFSKLYGM------AGMRLGLAAARPDLLAKLAR------ 257 (370)
T ss_pred HHHhCCCCcEEEEECchHHhccCcchHHHHhhCCCEEEEecccHhhcC------CccceeeeecCHHHHHHHHh------
Confidence 7654 488898853111221111111 234566554 44 66643 45 7999988777665410
Q ss_pred ecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcC
Q 001989 392 IDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQG 471 (985)
Q Consensus 392 ~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~ 471 (985)
. ...+.+ .. +..+++ ..+..++-+++..++..++.+++.+.|++.| +++..
T Consensus 258 ----------------------~-~~~~~~-~~---~~~aa~-~~L~~~~~~~~~~~~~~~~r~~l~~~L~~~g-~~~~~ 308 (370)
T PRK09105 258 ----------------------F-GHNPLP-VP---AAAAGL-ASLRDPKLVPQRRAENAAVREDTIAWLKKKG-YKCTP 308 (370)
T ss_pred ----------------------c-CCCCcC-HH---HHHHHH-HHHhCHHHHHHHHHHHHHHHHHHHHHHHHCC-CCcCC
Confidence 0 011111 11 112222 1122233456667778888899999999887 77653
Q ss_pred CCCcceEEEecCC-HHHHHHHHHHcCceeeee---cCCeEEEEeccCCCHHHHHHHHHHHh
Q 001989 472 LPFFDTVKVKCAD-AHAIASAAYKIEMNLRVV---DSNTVTASFDETTTLEDVDKLFIVFA 528 (985)
Q Consensus 472 ~~~~~~~~~~~~~-~~~v~~~L~~~GI~~~~~---~~~~lris~t~~~t~edId~li~aL~ 528 (985)
+..+-+.++.+. ..++.+.|.++||.++.. .++.+|+++. +++++++|+++|.
T Consensus 309 -~~~~f~~~~~~~~~~~l~~~L~~~gI~v~~~~~~~~~~~Ris~~---~~~~~~~l~~al~ 365 (370)
T PRK09105 309 -SQANCFMVDVKRPAKAVADAMAKQGVFIGRSWPIWPNWVRVTVG---SEEEMAAFRSAFA 365 (370)
T ss_pred -CCCcEEEEeCCCCHHHHHHHHHHCCcEEecCCCCCCCeEEEEcC---CHHHHHHHHHHHH
Confidence 222223455543 788999999999988432 2578999977 6889999999986
|
|
| >PRK08088 4-aminobutyrate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.51 E-value=4.8e-12 Score=148.19 Aligned_cols=295 Identities=15% Similarity=0.165 Sum_probs=173.8
Q ss_pred HHHHHHHHHhCCCc--cceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCC------------
Q 001989 636 NLGEWLCTITGFDS--FSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCG------------ 701 (985)
Q Consensus 636 e~~~~la~l~G~~~--~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G------------ 701 (985)
++.++++++.+.+. ..++.+||++|++.+++.+|.+. ++++.|.+...+||.........+
T Consensus 88 ~la~~l~~~~~~~~~~~~~f~~sGsea~e~Alklar~~~-----~r~~iv~~~~~yHG~~~~~~~~~~~~~~~~~~~~~~ 162 (425)
T PRK08088 88 ELCEKMNQKVPGDFAKKTLLVTTGSEAVENAVKIARAAT-----KRSGVIAFTGAYHGRTHYTLALTGKVNPYSAGMGLM 162 (425)
T ss_pred HHHHHHHHhCCCCCCCEEEEeCCcHHHHHHHHHHHHHHh-----CCCeEEEECCccCCccHHHHHhhCCCCccccCCCCC
Confidence 67788888876432 45778999999999999888762 133344557789998765543211
Q ss_pred ---cEEEEEcCCCCCCCC----HHHHHHHHHh--cCCCEEEEEEEcC-CCccccc---cCHHHHHHHHHHcCCEEEEEcc
Q 001989 702 ---MKIVSVGTDAKGNIN----IEELRKAAEA--NRDNLSTLMVTYP-STHGVYE---EGIDEICKIIHDNGGQVYMDGA 768 (985)
Q Consensus 702 ---~~vv~v~~d~~g~iD----~e~L~~~i~~--~~~~t~~Vvv~~p-n~~G~i~---~di~eI~~la~~~galliVD~a 768 (985)
+....+|.+.++ .+ +++|+++++. +.++.++|+++-. +..|.+. ..+++|.++|+++|++++.|.+
T Consensus 163 ~~~~~~~~~p~~~~~-~~~~~~~~~l~~~l~~~~~~~~~aavi~Epi~~~~G~~~~~~~~~~~l~~l~~~~~~~lI~Dev 241 (425)
T PRK08088 163 PGHVYRALYPCPLHG-VSEDDAIASIERIFKNDAAPEDIAAIIIEPVQGEGGFYAASPAFMQRLRALCDEHGIMLIADEV 241 (425)
T ss_pred CCCcEEcCCCccccC-ccHHHHHHHHHHHHHhccCCCceEEEEECcccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecc
Confidence 111112222221 22 5668888862 2356777777543 2345543 1389999999999999999998
Q ss_pred ccccccCCCCCC------cc--CCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCC
Q 001989 769 NMNAQVGLTSPG------YI--GADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLG 840 (985)
Q Consensus 769 ~~~~~~~l~~pg------~~--g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~ 840 (985)
+. + +.+++ .. -+|+.++ .|.++ +|..+|++++++++.+.+..... ..
T Consensus 242 ~~-g---~g~~g~~~~~~~~~~~pdi~s~--sK~l~-----~G~rig~v~~~~~~~~~~~~~~~--------------~~ 296 (425)
T PRK08088 242 QT-G---AGRTGTLFAMEQMGVAADLTTF--AKSIA-----GGFPLAGVTGRAEVMDAIAPGGL--------------GG 296 (425)
T ss_pred cc-C---CCcCcchhHHhhcCCCCCEEEE--ecccc-----CCCcceeeEecHHHHhhcCCCCC--------------CC
Confidence 74 2 22222 12 2565544 58874 45678999998877665532110 01
Q ss_pred CCCCcchhhhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc---cCCee--ecCCCCceeeEEEEEecC-c--
Q 001989 841 TIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK---HYPIL--FRGVNGTVAHEFIVDLRG-L-- 912 (985)
Q Consensus 841 ~i~s~~~g~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~---g~~l~--~~~~~~~~~~~~iv~~~~-~-- 912 (985)
. +.++++.++++.++|..+..+.+. ++..+..+++.+.|.+ .++.+ ..+. +.. +.+.+.. .
T Consensus 297 t----~~~~~~~~~a~~~~l~~~~~~~~~---~~~~~~~~~~~~~l~~l~~~~~~~~~v~g~-G~~---~~l~l~~~~~~ 365 (425)
T PRK08088 297 T----YAGNPIACAAALAVLKVFEQENLL---QKANALGEKLKDGLLAIAEKHPEIGDVRGL-GAM---IAIELFEDGDH 365 (425)
T ss_pred C----CCcCHHHHHHHHHHHHHHHhcCHH---HHHHHHHHHHHHHHHHHHHhCCCeEEEecc-ceE---EEEEEecCCCC
Confidence 1 122444455556667665444333 3444445555555543 22221 1121 222 2333310 0
Q ss_pred cccCCCCHHHHHHHHHHCCCccCCCCCCCCCEEEEeccCCCCHHHHHHHHccCChhHHHHhhc
Q 001989 913 KNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRLK 975 (985)
Q Consensus 913 ~~~~g~~~~~v~~~L~~~Gi~~~~~~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~~ 975 (985)
+.+.......+.+.+.++|+.+.... +..+.+|++++...|++||++ .++.|+++++.+|
T Consensus 366 ~~p~~~~~~~l~~~~~~~Gv~~~~~~-~~~~~iRl~~~~~~t~~ei~~--~i~~l~~~l~~~~ 425 (425)
T PRK08088 366 SKPNAKLTAQIVARARDKGLILLSCG-PYYNVLRILVPLTIEDAQIRQ--GLEIIAQCFDEAK 425 (425)
T ss_pred CCCCHHHHHHHHHHHHhCCCEEecCC-CCCCEEEEECCCCcCHHHHHH--HHHHHHHHHHhhC
Confidence 00001225678889999998764321 113899999999999999999 7888998887654
|
|
| >cd00617 Tnase_like Tryptophanase family (Tnase) | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.3e-12 Score=149.37 Aligned_cols=301 Identities=17% Similarity=0.187 Sum_probs=183.8
Q ss_pred HHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcCCC--
Q 001989 634 FNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDA-- 711 (985)
Q Consensus 634 ~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~d~-- 711 (985)
+.++++.+++++|.+.+ +.+++|+.|+..+++++. ++||+| ++++.+.++.......|++++.+++++
T Consensus 55 ~~~Leeaia~~~g~~~v-v~t~~Gt~Al~la~~al~--------~pGD~V-~~~~~f~~~~~~i~~~Ga~pv~v~i~~~~ 124 (431)
T cd00617 55 FYDLEDAVQDLFGFKHI-IPTHQGRGAENILFSILL--------KPGRTV-PSNMHFDTTRGHIEANGAVPVDLVIDEAH 124 (431)
T ss_pred HHHHHHHHHHHHCCCeE-EEcCCHHHHHHHHHHHhC--------CCCCEE-ccCCcccchHHHHHhCCCEeEEEeccccc
Confidence 34788899999998764 556778888865554431 477866 566544455556788999999998863
Q ss_pred --------CCCCCHHHHHHHHHhc-CCCEEEEEEEcCC-Cc-cccc--cCHHHHHHHHHHcCCEEEEEcccccc--c---
Q 001989 712 --------KGNINIEELRKAAEAN-RDNLSTLMVTYPS-TH-GVYE--EGIDEICKIIHDNGGQVYMDGANMNA--Q--- 773 (985)
Q Consensus 712 --------~g~iD~e~L~~~i~~~-~~~t~~Vvv~~pn-~~-G~i~--~di~eI~~la~~~galliVD~a~~~~--~--- 773 (985)
.|.+|+++|+++|++. .+++++|++++|+ .+ |..- .++++|.++|+++|++||.|+++... .
T Consensus 125 ~~~~~~pf~gniD~e~Le~~I~~~~~~~~~~I~v~~p~N~~gG~~~s~~~l~~i~eia~~~gi~li~DaAr~~~na~~i~ 204 (431)
T cd00617 125 DAQELIPFKGNIDVAKLEKLIDEVGAENIPYIVLTITNNTAGGQPVSMANLREVRELAHKYGIPVVLDAARFAENAYFIK 204 (431)
T ss_pred ccccccCCCCCcCHHHHHHHhCcccCCCccEEEEECCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEEchhhHhhhhhhh
Confidence 3569999999999732 2348899999985 45 6653 25778999999999999999997521 1
Q ss_pred ---cCCC--CCCc------cCCcEEEeCCcccccccCCCCCCceEEEEEcc-cccCcCCCCccccCCCCCCCCCCCCCCC
Q 001989 774 ---VGLT--SPGY------IGADVCHLNLHKTFCIPHGGGGPGMGPIGVKK-HLAPFLPSHPVVSTGGIPAPEKSQPLGT 841 (985)
Q Consensus 774 ---~~l~--~pg~------~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~-~l~~~lp~~~~g~~~~~~~~~~~~~~~~ 841 (985)
.+.. .+++ -..|.+++|++|.++ +|-+|+++.++ ++...+....+.. . .....+.
T Consensus 205 ~r~~g~~~~si~ei~~e~~s~sd~~~mS~~K~~~------~~~GG~i~~~d~~l~~~~~~~~~~~-~------~~~~~gG 271 (431)
T cd00617 205 EREEGYRDKSIAEIAREMFSYADGCTMSAKKDGL------VNIGGFLALRDDELYEEARQRVVLY-E------GFVTYGG 271 (431)
T ss_pred cccccccCCCHHHHHHHhhccCCEEEEEeecCCC------CccceEEEeCcHHHHHHHHHhcccc-C------Ccccccc
Confidence 1111 1111 147999999999764 34457888886 4655443211000 0 0000011
Q ss_pred CCCcchhhhHHHHHHHH-HHHHhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccc---cC
Q 001989 842 IAAAPWGSALILPISYT-YIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKN---TA 916 (985)
Q Consensus 842 i~s~~~g~~~~~~~a~a-~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~---~~ 916 (985)
.. ..-..|.+ .|..... .+..++..+++++|.++|++ |+.+.. |.+. |-+.++.+.+.. ..
T Consensus 272 ~~-------~r~~~A~A~gL~e~~~---~~~l~~~~~~r~~l~~~L~~~G~~v~~--P~Gg--h~v~~d~~~~~~~~~~~ 337 (431)
T cd00617 272 MA-------GRDMEALAQGLREAVE---EDYLRHRVEQVRYLGDRLDEAGVPIVE--PAGG--HAVFIDAREFLPHIPQE 337 (431)
T ss_pred cc-------HHHHHHHHHHHHhccc---HHHHHHHHHHHHHHHHHHHHCCCCccC--CCcc--eEEEEEhHHhcCCCCcc
Confidence 11 11111111 2221111 12334455567999999987 766543 2232 345677653211 01
Q ss_pred CCCHHHHHHHHHH-CCCccC---CCCC---C--------CCCEEEEeccC-CCCHHHHHHHHccCChhHHHHh
Q 001989 917 GIEPEDVAKRLMD-YGFHGP---TMSW---P--------VPGTLMIEPTE-SESKSWTGIVMLSSPSEKKLHR 973 (985)
Q Consensus 917 g~~~~~v~~~L~~-~Gi~~~---~~~~---p--------~~~~lris~t~-~~t~eeId~~~~~~~l~~~~~~ 973 (985)
+.++.+++.+|.+ .||.+. .+.+ | ..+.+|+.++- .-|.+++|. .++.++.++++
T Consensus 338 ~~~~~~la~~L~~e~gV~~~~~g~~~~~~~~~~~~~~~~~~~~~rl~~prr~~t~~~~~~--~~~~~~~~~~~ 408 (431)
T cd00617 338 QFPAQALAAELYLEAGVRAVELGIFSAGRDPNTGENKYPELELVRLAIPRRVYTQDHMDY--VAAAVIALYER 408 (431)
T ss_pred cCcHHHHHHHHHHHcCeeEEeecceecccCCCCCcccCCccceeEEeccccccCHHHHHH--HHHHHHHHHhh
Confidence 2357788877665 477742 2211 1 23679999884 679999999 77777777765
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to tryptophanase (Tnase) and tyrosine phenol-lyase (TPL). Tnase and TPL are active as tetramers and catalyze beta-elimination reactions. Tnase catalyzes degradation of L-tryptophan to yield indole, pyruvate and ammonia and TPL catalyzes degradation of L-tyrosine to yield phenol, pyruvate and ammonia. |
| >PTZ00376 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=7e-13 Score=154.37 Aligned_cols=300 Identities=11% Similarity=0.079 Sum_probs=172.7
Q ss_pred hhhHHHHHHHHHHHHHHHhC--CCcccee---cCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCC
Q 001989 627 AQGYQEMFNNLGEWLCTITG--FDSFSLQ---PNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCG 701 (985)
Q Consensus 627 ~~G~~~~~~e~~~~la~l~G--~~~~~~~---~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G 701 (985)
.+|..++.+.+.+++.+..+ .+...+. ..+|++|...++++++.+. ++||+|+++++.+..+...++..|
T Consensus 71 ~~G~~~lR~aia~~~~~~~~~~~~~~~v~~~~t~G~~~al~~~~~~l~~~~-----~~Gd~Vlv~~P~y~~~~~~~~~~G 145 (404)
T PTZ00376 71 IEGLQSFIEAAQKLLFGEASYALAEKRIATVQALSGTGALRLGFEFLKRFL-----PAGTTVYVSNPTWPNHVNIFKSAG 145 (404)
T ss_pred CCCCHHHHHHHHHHhcCCCccccccCeEEEeeccCcchHHHHHHHHHHHhc-----CCCCEEEEcCCCchhHHHHHHHcC
Confidence 46766555555554433222 1222333 3444455544444444432 478999999998888888889999
Q ss_pred cEEEEEcCC--CCCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccc--cCHHHHHHHHHHcCCEEEEEccccccc-cC
Q 001989 702 MKIVSVGTD--AKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYE--EGIDEICKIIHDNGGQVYMDGANMNAQ-VG 775 (985)
Q Consensus 702 ~~vv~v~~d--~~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~--~di~eI~~la~~~galliVD~a~~~~~-~~ 775 (985)
++++.+|.. .++.+|++.+++++.+.+++++++++.+| |++|.+- .++++|.++|+++|+++++|.++..-. .+
T Consensus 146 ~~~~~v~l~~~~~~~~d~~~l~~~~~~~~~~~~~~~~~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~ 225 (404)
T PTZ00376 146 LNVKEYRYYDPKTKGLDFDGMLEDLRTAPNGSVVLLHACAHNPTGVDPTEEQWKEIADVMKRKNLIPFFDMAYQGFASGD 225 (404)
T ss_pred CceeeccccCcccCCcCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEehhhcCccCCC
Confidence 999999983 24789999999999644345677777888 5799985 257888999999999999999863110 00
Q ss_pred C----CCC---CccCC-cEEEeCCcccccccCCCCCCceEEEE---EcccccCcCCCCccccCCCCCCCCCCCCCCCCCC
Q 001989 776 L----TSP---GYIGA-DVCHLNLHKTFCIPHGGGGPGMGPIG---VKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAA 844 (985)
Q Consensus 776 l----~~p---g~~g~-Di~~~s~hK~l~~p~g~GGPg~G~i~---~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s 844 (985)
. ... ...+. =+++.|+.|+|++| |.++|++. .++++.+.+-...... . + ....+.+
T Consensus 226 ~~~~~~~~~~~~~~~~~vi~i~SfSK~~~~~----GlRvG~~~~~~~~~~~~~~l~~~~~~~-~------~-~~~~~~~- 292 (404)
T PTZ00376 226 LDKDAYAIRLFAERGVEFLVAQSFSKNMGLY----GERIGALHIVCANKEEAANVLSQLKLI-I------R-PMYSSPP- 292 (404)
T ss_pred HHHHHHHHHHHHhcCCcEEEEEeCCCccccc----ccccceEEEEeCCHHHHHHHHHHHHHH-H------h-hhcCCCc-
Confidence 0 000 01111 26678889998765 78999984 3444322111000000 0 0 0001111
Q ss_pred cchhhhHHHHHHHHHHHHhcH------HHHHHHHHHHHHHHHHHHHHhhc-cCC--eeecCCCCceeeEEEEEecCcccc
Q 001989 845 APWGSALILPISYTYIAMMGS------KGLTEASKIAILNANYMAKRLEK-HYP--ILFRGVNGTVAHEFIVDLRGLKNT 915 (985)
Q Consensus 845 ~~~g~~~~~~~a~a~l~~lg~------eGl~~~~~~~~~~a~~l~~~L~~-g~~--l~~~~~~~~~~~~~iv~~~~~~~~ 915 (985)
..++ .++..++.. +. +-+++..++..++++.+.+.|++ +.. +.+..+.+.++ +.+.
T Consensus 293 -~~~q----~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~p~gg~f--~~~~------- 357 (404)
T PTZ00376 293 -IHGA----RIADRILSD-PELRAEWLSELKEMSGRIQNMRQLLYDELKALGSPGDWEHIINQIGMF--SFTG------- 357 (404)
T ss_pred -hHHH----HHHHHHhCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccccccCceEE--EecC-------
Confidence 1111 111122211 10 11333344567778888888876 222 11112222222 1122
Q ss_pred CCCCHHHHHHHHHHC-CCccCCCCCCCCCEEEEeccCCCCHHHHHHHHccCChhHHHH
Q 001989 916 AGIEPEDVAKRLMDY-GFHGPTMSWPVPGTLMIEPTESESKSWTGIVMLSSPSEKKLH 972 (985)
Q Consensus 916 ~g~~~~~v~~~L~~~-Gi~~~~~~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~ 972 (985)
.+ .+++++|.++ |+.+.. +. ||+++. .++++++. +++.|++++.
T Consensus 358 --~~-~~~~~~L~~~~~v~v~p------~~-Ris~~~-~~~~~~~~--~~~~l~~~~~ 402 (404)
T PTZ00376 358 --LT-KEQVERLIEKYHIYLLD------NG-RISVAG-LTSKNVDY--VAEAIHDVVR 402 (404)
T ss_pred --CC-HHHHHHHHHhCCEeecC------CC-eEEEec-cCHHhHHH--HHHHHHHHHh
Confidence 22 4678888877 887632 22 888844 68999999 7888887764
|
|
| >PRK07671 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=4.6e-13 Score=153.89 Aligned_cols=205 Identities=22% Similarity=0.200 Sum_probs=141.9
Q ss_pred HHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCc-ccHH---HHHHCCcEEEEEcC
Q 001989 634 FNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHG-TNPA---TAAMCGMKIVSVGT 709 (985)
Q Consensus 634 ~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg-~~~~---~a~~~G~~vv~v~~ 709 (985)
..++++.++++.|.+.. +.+++|+.+..+++ ... .++++||+++..|+ ++.. .+...|++++.++.
T Consensus 52 ~~~Le~~lA~l~g~~~~-~~~~sG~aai~~~~----~~l-----~~Gd~Viv~~~~y~~~~~~~~~~~~~~G~~v~~v~~ 121 (377)
T PRK07671 52 RAALEELIAVLEGGHAG-FAFGSGMAAITAVM----MLF-----SSGDHVILTDDVYGGTYRVMTKVLNRFGIEHTFVDT 121 (377)
T ss_pred HHHHHHHHHHHhCCCce-EEeCCHHHHHHHHH----HHh-----CCCCEEEECCCccchHHHHHHHHHhcCCeEEEEECC
Confidence 45789999999998764 55667776553222 111 36889999887776 3322 23457999998875
Q ss_pred CCCCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCccCCcEEE
Q 001989 710 DAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIGADVCH 788 (985)
Q Consensus 710 d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~g~Di~~ 788 (985)
.|+++++++++ ++|++|++++| |++|.+. |+++|+++|+++|+++++|+++.. +....|..+|+|+++
T Consensus 122 -----~d~~~l~~ai~---~~tklV~le~P~NPtg~~~-dl~~I~~la~~~g~~lvvD~a~~~--~~~~~p~~~g~Divv 190 (377)
T PRK07671 122 -----SNLEEVEEAIR---PNTKAIYVETPTNPLLKIT-DIKKISTIAKEKGLLTIVDNTFMT--PYWQSPISLGADIVL 190 (377)
T ss_pred -----CCHHHHHHhcC---CCCeEEEEECCCCCCCccc-CHHHHHHHHHHcCCEEEEECCCCc--cccCChhhhCCeEEE
Confidence 38999999997 78999999999 4689987 999999999999999999998742 223456678999999
Q ss_pred eCCcccccccCCCCCC---ceEEEEEcc-cccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhc
Q 001989 789 LNLHKTFCIPHGGGGP---GMGPIGVKK-HLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMG 864 (985)
Q Consensus 789 ~s~hK~l~~p~g~GGP---g~G~i~~~~-~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg 864 (985)
.|++|+|+ || ..|++++++ ++.+.+... + ..++...+ + ..+|..+ .|
T Consensus 191 ~S~sK~l~------G~~~~~~G~~v~~~~~l~~~~~~~------------~-~~~g~~~~-----~---~~a~l~~--~~ 241 (377)
T PRK07671 191 HSATKYLG------GHSDVVAGLVVVNSPELAEDLHFV------------Q-NSTGGILG-----P---QDSWLLL--RG 241 (377)
T ss_pred ecCccccc------CCccceeEEEEeCcHHHHHHHHHH------------H-HhhcCCCC-----H---HHHHHHH--cC
Confidence 99999984 44 256666653 443332100 0 01111111 1 1234333 34
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhc
Q 001989 865 SKGLTEASKIAILNANYMAKRLEK 888 (985)
Q Consensus 865 ~eGl~~~~~~~~~~a~~l~~~L~~ 888 (985)
.+.+..+.++..+++..+.+.|++
T Consensus 242 l~tl~~R~~~~~~na~~la~~L~~ 265 (377)
T PRK07671 242 LKTLGIRMEEHETNSRAIAEFLNN 265 (377)
T ss_pred cChHHHHHHHHHHHHHHHHHHHHc
Confidence 444566777888999999999986
|
|
| >PRK06460 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=7.5e-13 Score=152.16 Aligned_cols=210 Identities=16% Similarity=0.152 Sum_probs=142.2
Q ss_pred HHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCc-ccH---HHHHHCCcEEEEEcC
Q 001989 634 FNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHG-TNP---ATAAMCGMKIVSVGT 709 (985)
Q Consensus 634 ~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg-~~~---~~a~~~G~~vv~v~~ 709 (985)
..++++.+++++|.+.. +.+++|++|+..++.++ . +++|+||++.+.++ ++. ..++..|++++.++.
T Consensus 47 ~~~L~~~lA~l~g~~~~-v~~~sG~~ai~~~l~al---~-----~~Gd~Vl~~~~~~~~ty~~~~~~~~~~G~~v~~~~~ 117 (376)
T PRK06460 47 VLELTKKIVELENAEMG-VAFSSGMGAISTTALAL---L-----KPGNSVLVHRDMFGRSYRFFTDYLKNWGVNVDASNP 117 (376)
T ss_pred HHHHHHHHHHHhCCCcE-EEeCCHHHHHHHHHHHH---h-----CCCCEEEEecCCcCcHHHHHHHHHHhhCcEEEEECC
Confidence 45788999999998764 44567776664444333 1 47789999765443 332 335678999988886
Q ss_pred CCCCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCccCCcEEE
Q 001989 710 DAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIGADVCH 788 (985)
Q Consensus 710 d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~g~Di~~ 788 (985)
+ |.+.+++.++ ++|++|++++| |++|.+. |+++|+++|+++|+++++|+++.... ...+..+++|+++
T Consensus 118 ~-----~~~~l~~~~~---~~tklV~l~sp~NPtG~v~-d~~~I~~la~~~g~~vivDea~~~~~--~~~~l~~~~divv 186 (376)
T PRK06460 118 G-----SDNIIEKAKS---KRYDVVFVENITNPLLRVV-DITELSKVCKENGSILIVDATFSTPI--NQKPLELGADIVV 186 (376)
T ss_pred C-----CHHHHHHhcC---CCceEEEEECCCCCCCccc-CHHHHHHHHHHcCCEEEEECCcCccc--cCChhhcCCCEEE
Confidence 4 3345555554 78999999999 5799998 89999999999999999999975321 2234456899999
Q ss_pred eCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHHH
Q 001989 789 LNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGL 868 (985)
Q Consensus 789 ~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl 868 (985)
.|++|+|+ |.++..+|+++.++++.+.+.... . .. +++. .+ ..+|..+ .+.+-+
T Consensus 187 ~S~sK~l~---G~~~~~~G~~~~~~~l~~~l~~~~-----------~--~~-g~~~----~~---~~a~~~l--~~~~~l 240 (376)
T PRK06460 187 HSASKFLA---GHNDVIAGLAAGYGKLLNVIDQMR-----------R--TL-GTSL----DP---HAAYLTL--RGIKTL 240 (376)
T ss_pred eecceecc---CCCCceEEEEecCHHHHHHHHHHH-----------H--hc-CCCC----CH---HHHHHHH--hchhhH
Confidence 99999984 112345888888776654432100 0 01 1111 11 1233333 345667
Q ss_pred HHHHHHHHHHHHHHHHHhhcc
Q 001989 869 TEASKIAILNANYMAKRLEKH 889 (985)
Q Consensus 869 ~~~~~~~~~~a~~l~~~L~~g 889 (985)
..+.++..+++.++++.|++.
T Consensus 241 ~~r~~~~~~n~~~l~~~L~~~ 261 (376)
T PRK06460 241 KIRMDVINRNAEQIAEFLEGH 261 (376)
T ss_pred HHHHHHHHHHHHHHHHHHHcC
Confidence 777888999999999999863
|
|
| >PRK07590 L,L-diaminopimelate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.50 E-value=3.3e-12 Score=149.05 Aligned_cols=355 Identities=15% Similarity=0.155 Sum_probs=192.1
Q ss_pred HHHHHHHHHHHhccccCcccccccccccccCCCcccccccc---ccccc---cccCCCCchhhhhhHHHHHHHHHHHHHH
Q 001989 570 EHELLRYIHLLQSKELSLCHSMIPLGSCTMKLNATTEMMPV---TWPSF---ANIHPFAPADQAQGYQEMFNNLGEWLCT 643 (985)
Q Consensus 570 e~e~~~~l~~l~~~~~~~~~~~~~lG~~t~~~~~~~~~~~~---~~~~f---~~~~p~~p~e~~~G~~~~~~e~~~~la~ 643 (985)
-.++.+.+..+..+.. ....+.|+.+.+.+.+....... ..... ...+.|.| .+|..++.+.+.+++.+
T Consensus 17 ~~~~~~~~~~~~~~~~--~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~---~~G~~~LR~aia~~~~~ 91 (409)
T PRK07590 17 FPEIARRVNAFREANP--EAKIIRLGIGDVTQPLPPAVIEAMHKAVDEMGTAETFRGYGP---EQGYDFLREKIAENDYQ 91 (409)
T ss_pred HHHHHHHHHHHhhhcC--CCceEEecCcCCCCCCCHHHHHHHHHHHhcccccCCccCCCC---CCCCHHHHHHHHHHHHH
Confidence 3567777777765532 12356788777665543322211 00110 01122322 35765555555555444
Q ss_pred HhC--CCccceecCcHHH-HHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcE-----------EEEEcC
Q 001989 644 ITG--FDSFSLQPNAGAA-GEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMK-----------IVSVGT 709 (985)
Q Consensus 644 l~G--~~~~~~~~~sGa~-a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~-----------vv~v~~ 709 (985)
..| .+..++..++|++ +.. .+ .... .++|+|+++++.+..+...++..|.+ ++.+|+
T Consensus 92 ~~g~~~~~~~I~it~Ga~~al~-~l---~~~~-----~~gd~V~v~~P~Y~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~ 162 (409)
T PRK07590 92 ARGCDISADEIFISDGAKCDTG-NI---LDIF-----GPDNTIAVTDPVYPVYVDTNVMAGRTGEANEDGRYSGIVYLPC 162 (409)
T ss_pred hcCCcCChhhEEECCCHHHHHH-HH---HHhc-----CCCCEEEEeCCCCcchHHHHHHcCCcccccccccccceeEeec
Confidence 444 4445666666655 332 22 1221 37789999998887777778888986 888888
Q ss_pred CCCCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccc--cCHHHHHHHHHHcCCEEEEEccccccc-cC-CCCC-Ccc-
Q 001989 710 DAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYE--EGIDEICKIIHDNGGQVYMDGANMNAQ-VG-LTSP-GYI- 782 (985)
Q Consensus 710 d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~--~di~eI~~la~~~galliVD~a~~~~~-~~-l~~p-g~~- 782 (985)
+.++...++ +. .+++++|++++| |++|.+. ..+++|.++|+++|++++.|.++..-. .+ ...+ ..+
T Consensus 163 ~~~~~~~~d-----~~--~~~~k~i~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~iI~De~Y~~~~~~~~~~~~~~~~~ 235 (409)
T PRK07590 163 TAENNFVPE-----LP--EEKVDIIYLCFPNNPTGTVLTKEQLKAWVDYAKENGSLILFDAAYEAFISDPSLPHSIYEIE 235 (409)
T ss_pred ccccCCccc-----Cc--ccCceEEEEeCCCCCcCCcCCHHHHHHHHHHHHHcCeEEEEEccchhhccCCCCCcchhhCC
Confidence 644222222 11 157889999999 5799986 257788889999999999999874211 11 0001 111
Q ss_pred C---CcEEEeCCcccccccCCCCCCceEEEEEcccccCcCC-CCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHH
Q 001989 783 G---ADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLP-SHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYT 858 (985)
Q Consensus 783 g---~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp-~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a 858 (985)
+ .-|++.|+.|+|++| |.++|++++++++.+.+. +..... ..............++ ...+. ++..
T Consensus 236 ~~~~~vi~~~SfSK~~~~p----GlRiG~~i~~~~li~~~~~~~~~~~-~~~~~~~~~~~~~~~s--~~~q~----a~~~ 304 (409)
T PRK07590 236 GARECAIEFRSFSKTAGFT----GTRCAYTVVPKELKGKTSDGEGVSL-NSLWNRRQSTKFNGVS--YIVQR----AAEA 304 (409)
T ss_pred CcccceEEEecCccccCCc----CceeEEEEcCHHHhhhccccchhhh-HHHHHHHHhhcccCcC--HHHHH----HHHH
Confidence 1 125577888988654 789999999877664221 000000 0000000000001111 11111 1112
Q ss_pred HHHHhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHH-CCCccCC
Q 001989 859 YIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMD-YGFHGPT 936 (985)
Q Consensus 859 ~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~-~Gi~~~~ 936 (985)
++..-+.+-+++..+...++.+++.+.|++ ++.+ . .+.+..+ +.++++ .+.+..++++.|.+ +|+.+..
T Consensus 305 ~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~-~-~~~g~~f--~wi~~~-----~~~~~~~~~~~l~~~~gv~v~p 375 (409)
T PRK07590 305 VYSPEGKAQIKELIDYYMENAKIIREGLESAGFEV-Y-GGVNAPY--IWVKTP-----DGMSSWDFFDKLLQEANVVGTP 375 (409)
T ss_pred HhcCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCce-e-cCCcceE--EEEECC-----CCCCHHHHHHHHHHHCCEEEeC
Confidence 222112333444555567777888888876 3333 2 2212222 346664 13567788888764 6987643
Q ss_pred -CCCC--CCCEEEEeccCCCCHHHHHHHHccCChhH
Q 001989 937 -MSWP--VPGTLMIEPTESESKSWTGIVMLSSPSEK 969 (985)
Q Consensus 937 -~~~p--~~~~lris~t~~~t~eeId~~~~~~~l~~ 969 (985)
..|. ..+++||+. ..++++++. .++.|.+
T Consensus 376 g~~f~~~~~~~iRi~~--~~~~~~l~~--~l~rl~~ 407 (409)
T PRK07590 376 GSGFGPSGEGYFRLSA--FGSRENVLE--AMERIKK 407 (409)
T ss_pred hhHhCCCCCCEEEEEc--cCCHHHHHH--HHHHHHh
Confidence 2232 246899995 357888888 5555544
|
|
| >PRK07865 N-succinyldiaminopimelate aminotransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.4e-12 Score=147.90 Aligned_cols=281 Identities=14% Similarity=0.113 Sum_probs=167.8
Q ss_pred hhHHHHHHHHHHHHHHHhCCC---ccceecCcHHH-HHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcE
Q 001989 628 QGYQEMFNNLGEWLCTITGFD---SFSLQPNAGAA-GEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMK 703 (985)
Q Consensus 628 ~G~~~~~~e~~~~la~l~G~~---~~~~~~~sGa~-a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~ 703 (985)
+|..++.+.+.+++.+..|.+ ...+..++|++ +.. . ++..+. ..++++|+++++.|..+...++..|++
T Consensus 62 ~G~~~lr~~ia~~l~~~~~~~~~~~~~I~it~G~~~~i~-~--~~~~l~----~~~gd~Vl~~~p~y~~~~~~~~~~g~~ 134 (364)
T PRK07865 62 AGTPELREAIVGWLARRRGVTGLDPAAVLPVIGSKELVA-W--LPTLLG----LGPGDVVVIPELAYPTYEVGARLAGAT 134 (364)
T ss_pred cCCHHHHHHHHHHHHHHcCCCCCCcccEEEccChHHHHH-H--HHHHHc----CCCCCEEEECCCCcccHHHHHHhcCCE
Confidence 576666667777777666643 44566666655 432 2 112110 136789999998888887778889999
Q ss_pred EEEEcCCCCCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccc--cCHHHHHHHHHHcCCEEEEEccccccc-cC--CC
Q 001989 704 IVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYE--EGIDEICKIIHDNGGQVYMDGANMNAQ-VG--LT 777 (985)
Q Consensus 704 vv~v~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~--~di~eI~~la~~~galliVD~a~~~~~-~~--l~ 777 (985)
++.++ +++++.+ +++++|++++| |++|.+. .++++|.++|+++|+++++|+++..-. .+ +.
T Consensus 135 ~~~~~-------~~~~l~~------~~~~~v~~~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~ 201 (364)
T PRK07865 135 VVRAD-------SLTELGP------QRPALIWLNSPSNPTGRVLGVDHLRKVVAWARERGAVVASDECYLELGWDAEPVS 201 (364)
T ss_pred EEecC-------ChhhCCc------ccceEEEEcCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchhhhccCCCCCc
Confidence 87765 2333321 57889999988 5799875 247888999999999999999874211 00 00
Q ss_pred --CC----CccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhH
Q 001989 778 --SP----GYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSAL 851 (985)
Q Consensus 778 --~p----g~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~ 851 (985)
.+ +...-.+++.|++|.|+.| |.++|++++++++...+.... . ....+.+...+.
T Consensus 202 ~~~~~~~~~~~~~~i~~~S~SK~~~~~----GlRiG~i~~~~~~~~~~~~~~------------~--~~~~~~~~~~q~- 262 (364)
T PRK07865 202 ILDPRVCGGDHTGLLAVHSLSKQSNLA----GYRAGFVAGDPALVAELLEVR------------K--HAGMMVPAPVQA- 262 (364)
T ss_pred cccccccCCccceEEEEeechhccCCC----ceeeEEEecCHHHHHHHHHHH------------H--hcCCCcCHHHHH-
Confidence 01 0111237788999998654 678999998877655432110 0 001111111111
Q ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHC
Q 001989 852 ILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDY 930 (985)
Q Consensus 852 ~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~ 930 (985)
++..++.. .+-+++..+...++.+++.+.|++ ++.+. .+.+.++ +.+.+. .+..++.+.|.++
T Consensus 263 ---~~~~~l~~--~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~--~~~~~~~--~~~~~~-------~~~~~~~~~l~~~ 326 (364)
T PRK07865 263 ---AMVAALGD--DAHVREQRERYARRRAVLRPALEAAGFRVD--HSEAGLY--LWATRG-------EDCWDTVAWLAER 326 (364)
T ss_pred ---HHHHHhCC--HHHHHHHHHHHHHHHHHHHHHHHHcCCccc--CCCccEE--EEEeCC-------CCHHHHHHHHHHC
Confidence 11122221 233444445566777888888876 44332 2223222 233332 3467888999999
Q ss_pred CCccCCC-CC-C-CCCEEEEeccCCCCHHHHHHHHccCCh
Q 001989 931 GFHGPTM-SW-P-VPGTLMIEPTESESKSWTGIVMLSSPS 967 (985)
Q Consensus 931 Gi~~~~~-~~-p-~~~~lris~t~~~t~eeId~~~~~~~l 967 (985)
||.+... .| + .++++||+++. +++++++ .++.|
T Consensus 327 gv~v~pg~~f~~~~~~~iRi~~~~--~~~~~~~--~~~~l 362 (364)
T PRK07865 327 GILVAPGDFYGPAGAQHVRVALTA--TDERIAA--AVERL 362 (364)
T ss_pred CEEEeCccccCcCCCCEEEEEecC--CHHHHHH--HHHHh
Confidence 9986432 22 1 35799999874 5888888 44443
|
|
| >PRK05957 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.3e-11 Score=143.04 Aligned_cols=307 Identities=10% Similarity=0.069 Sum_probs=187.9
Q ss_pred ecCCCCCCCCCcHHHHHHHHh---CCccccccCCChhhHhhhHHHHHHHHHHHHHHhcCCC---CcceeeccchHHHHHH
Q 001989 170 FIGMGYYNTHVPPVILRNIME---NPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLP---MSNASLLDEGTAAAEA 243 (985)
Q Consensus 170 ~lG~g~y~~~~p~~v~~~i~~---~~~~~t~~~pyq~e~sqg~l~~i~e~q~~ia~L~g~~---~~~~sl~~~~ta~~ea 243 (985)
.+|.|..+...|+.+.+++.. +.. ...|. ..+|..+....+++.+++.+|.+ ..++.+++|++.++..
T Consensus 31 ~l~~g~~~~~~~~~~~~a~~~~~~~~~----~~~Y~--~~~G~~~lr~~~~~~l~~~~g~~~~~~~~i~~t~G~~~~l~~ 104 (389)
T PRK05957 31 SLGQGVVSYPPPPEAIEALNNFLANPE----NHKYQ--AVQGIPPLLEAITQKLQQDNGIELNNEQAIVVTAGSNMAFMN 104 (389)
T ss_pred EccCCCCCCCCCHHHHHHHHHHHhCCC----CCCCC--CCCCCHHHHHHHHHHHHHHhCCCCCCCCeEEEeCChHHHHHH
Confidence 567777665566666544332 111 11232 24677777788888999999974 4578888998877766
Q ss_pred HHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc--------hhhhc-cCCCEeEEEEEcC-CCCeeec
Q 001989 244 MAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL--------KDIDY-KSGDVCGVLVQYP-GTEGEVL 313 (985)
Q Consensus 244 ~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~--------~~l~~-l~~~t~~V~v~~p-n~~G~v~ 313 (985)
+..++ . ++||+|++++-.|+.+...++ ..|++++.++. +++++ +++++++|++.+| |.+|.+.
T Consensus 105 ~~~~~-~--~~gd~Vlv~~P~y~~~~~~~~----~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~klv~~~~p~NPtG~~~ 177 (389)
T PRK05957 105 AILAI-T--DPGDEIILNTPYYFNHEMAIT----MAGCQPILVPTDDNYQLQPEAIEQAITPKTRAIVTISPNNPTGVVY 177 (389)
T ss_pred HHHHh-c--CCCCEEEEeCCCCcCHHHHHH----hcCCEEEEeecCCCCCcCHHHHHHhcCcCceEEEEeCCCCCCCcCc
Confidence 55554 2 388999999988877665543 46888877754 34555 7778999999888 7899987
Q ss_pred c---HHHHHHHHHhCCcEEEEEecCcc-c--cC-C-CC----CCcccceEEEecC-ccccccCCCCCCc--EEEEEEchh
Q 001989 314 D---YGDFIKNAHANGVKVVMATDLLA-L--TI-L-KP----PGELGADIVVGSA-QRFGVPMGYGGPH--AAFLATSQE 378 (985)
Q Consensus 314 d---i~~I~~~a~~~galliV~a~~~~-l--g~-l-~~----~~~~GaDi~v~s~-k~lg~P~~~GGP~--~G~l~~~~~ 378 (985)
+ +++|+++||++|+++++|. ... + .- . .+ +...+--|++.|. |.|+ .|| +|++++.++
T Consensus 178 ~~~~~~~i~~~a~~~~~~li~De-~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g------~~GlRiG~~~~~~~ 250 (389)
T PRK05957 178 PEALLRAVNQICAEHGIYHISDE-AYEYFTYDGVKHFSPGSIPGSGNHTISLYSLSKAYG------FASWRIGYMVIPIH 250 (389)
T ss_pred CHHHHHHHHHHHHHcCcEEEEec-cchhccCCCCCccChhhCCCccCcEEEEecchhhcc------CccceeEEEecCHH
Confidence 6 9999999999999999943 211 1 10 0 01 1122234667776 7664 355 799998888
Q ss_pred hHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHH
Q 001989 379 YKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFA 458 (985)
Q Consensus 379 ~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~ 458 (985)
+++++... +.+...|++...-..+... +. .+..-+++..++..++.+++.
T Consensus 251 ~~~~~~~~----------------------------~~~~~~~~~~~~q~~~~~~-l~-~~~~~~~~~~~~~~~~r~~l~ 300 (389)
T PRK05957 251 LLEAIKKI----------------------------QDTILICPPVVSQYAALGA-LQ-VGKSYCQQHLPEIAQVRQILL 300 (389)
T ss_pred HHHHHHHH----------------------------HhhcccCCCcHHHHHHHHH-Hh-CChHHHHHHHHHHHHHHHHHH
Confidence 77665210 0111122211111111111 11 122235666677788888899
Q ss_pred HHHhcCCCe-EEcCCCCcce-EEEecC-C--HHHHHHHHH-HcCceeeee-----c-CCeEEEEeccCCCHHHHHHHHHH
Q 001989 459 LGLKKLGTV-EVQGLPFFDT-VKVKCA-D--AHAIASAAY-KIEMNLRVV-----D-SNTVTASFDETTTLEDVDKLFIV 526 (985)
Q Consensus 459 ~~L~~~g~~-~~~~~~~~~~-~~~~~~-~--~~~v~~~L~-~~GI~~~~~-----~-~~~lris~t~~~t~edId~li~a 526 (985)
+.|++++++ .+. .+...- +.++.+ + ..++.++|. ++||.+... . ++.+|+++... +++++++.++.
T Consensus 301 ~~L~~~~~~~~~~-~~~gg~~~~~~~~~~~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRis~~~~-~~~~l~~~~~~ 378 (389)
T PRK05957 301 KSLGQLQDRCTLH-PANGAFYCFLKVNTDLNDFELVKQLIREYRVAVIPGTTFGMKNGCYLRIAYGAL-QKATAKEGIER 378 (389)
T ss_pred HHHHhcCCCcccc-CCCeeEEEEEeCCCCCChHHHHHHHHHHCCEEEccchhhCCCCCCEEEEEEecC-CHHHHHHHHHH
Confidence 999887433 322 222111 223433 2 778999986 579987542 1 35899999654 46666665555
Q ss_pred Hh
Q 001989 527 FA 528 (985)
Q Consensus 527 L~ 528 (985)
|.
T Consensus 379 l~ 380 (389)
T PRK05957 379 LV 380 (389)
T ss_pred HH
Confidence 54
|
|
| >PLN02607 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=99.50 E-value=5.6e-12 Score=148.02 Aligned_cols=307 Identities=13% Similarity=0.134 Sum_probs=181.4
Q ss_pred hhhHHHHHHHHHHHHHHHhC----CCccceecCcHHH-HHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHH-HC
Q 001989 627 AQGYQEMFNNLGEWLCTITG----FDSFSLQPNAGAA-GEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAA-MC 700 (985)
Q Consensus 627 ~~G~~~~~~e~~~~la~l~G----~~~~~~~~~sGa~-a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~-~~ 700 (985)
..|..++.+.+.+.+.+.+| +++..+..++|++ +.+.... .+ ..++|.|+++.+.++.+..... ..
T Consensus 94 ~~G~~~LR~aiA~~l~~~~~~~~~v~p~~Ivit~G~t~al~~l~~---~l-----~~pGD~Vlv~~P~Y~~f~~~~~~~~ 165 (447)
T PLN02607 94 YHGLKSFRQAMASFMEQIRGGKARFDPDRIVLTAGATAANELLTF---IL-----ADPGDALLVPTPYYPGFDRDLRWRT 165 (447)
T ss_pred CcchHHHHHHHHHHHHHhcCCCCCcCHHHeEEcCChHHHHHHHHH---Hh-----CCCCCEEEEcCCCCcchHHHHHhcC
Confidence 46777777777777777665 3444555555544 4433222 22 1478999999998887766555 57
Q ss_pred CcEEEEEcCCCC--CCCCHHHHHHHHHhc---CCCEEEEEEEcC-CCcccccc--CHHHHHHHHHHcCCEEEEEcccccc
Q 001989 701 GMKIVSVGTDAK--GNINIEELRKAAEAN---RDNLSTLMVTYP-STHGVYEE--GIDEICKIIHDNGGQVYMDGANMNA 772 (985)
Q Consensus 701 G~~vv~v~~d~~--g~iD~e~L~~~i~~~---~~~t~~Vvv~~p-n~~G~i~~--di~eI~~la~~~galliVD~a~~~~ 772 (985)
|++++.|+++.+ +.+|++++++++++. ..++++|++++| |++|.+.+ .+++|.++|+++|+.+|+|.++...
T Consensus 166 g~~vv~v~~~~~~~f~~~~~~le~a~~~a~~~~~~vk~lll~nP~NPtG~~~s~e~l~~l~~~~~~~~i~lI~DEiYa~~ 245 (447)
T PLN02607 166 GVKIVPIHCDSSNNFQVTPQALEAAYQEAEAANIRVRGVLITNPSNPLGATVQRSVLEDILDFVVRKNIHLVSDEIYSGS 245 (447)
T ss_pred CcEEEEEeCCCCCCCcCCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCCEEEEecccccc
Confidence 999999988643 568999999998632 247899999999 57998862 4889999999999999999987422
Q ss_pred c-c--CCCCC----CccC----Cc--EEEeCCcccccccCCCCCCceEEEEEc-ccccCcCCCCccccCCCCCCCCCCCC
Q 001989 773 Q-V--GLTSP----GYIG----AD--VCHLNLHKTFCIPHGGGGPGMGPIGVK-KHLAPFLPSHPVVSTGGIPAPEKSQP 838 (985)
Q Consensus 773 ~-~--~l~~p----g~~g----~D--i~~~s~hK~l~~p~g~GGPg~G~i~~~-~~l~~~lp~~~~g~~~~~~~~~~~~~ 838 (985)
. . .+... ...+ .+ +++.|+.|.|+.| |-++|++++. +.+...+... ..
T Consensus 246 ~f~~~~f~S~~s~~~~~~~~~~~~~v~vi~s~SK~fg~~----GlRvG~ivs~n~~l~~~~~~~--------------~~ 307 (447)
T PLN02607 246 VFSASEFVSVAEIVEARGYKGVAERVHIVYSLSKDLGLP----GFRVGTIYSYNDKVVTTARRM--------------SS 307 (447)
T ss_pred ccCCCCcccHHHHHhhcCCCCCcCcEEEEEcchhcCCCC----cceEEEEEEcCHHHHHHHHHH--------------hh
Confidence 1 1 11100 0111 12 4567888888654 6889999973 4443322100 00
Q ss_pred CCCCCCcchhhhHHHHHHHHHHHHhcHH-----HHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCc
Q 001989 839 LGTIAAAPWGSALILPISYTYIAMMGSK-----GLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGL 912 (985)
Q Consensus 839 ~~~i~s~~~g~~~~~~~a~a~l~~lg~e-----Gl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~ 912 (985)
...+++ ..+ .+++ ..+.+. -+.+..++..++.+.+.+.|++ ++.. ..+.+..+ +.++++..
T Consensus 308 ~~~~s~--~~q-----~~~~--~~L~d~~~~~~~l~~~r~~l~~~~~~~~~~L~~~gi~~--~~~~ag~f--vw~~L~~~ 374 (447)
T PLN02607 308 FTLVSS--QTQ-----HLLA--SMLSDEEFTENYIRTNRERLRKRYEMIVQGLRRAGIEC--LKGNAGLF--CWMNLSPL 374 (447)
T ss_pred cCCCCH--HHH-----HHHH--HHhCCchhHHHHHHHHHHHHHHHHHHHHHHHHhCCCCc--ccCCeeEE--EEEEchHh
Confidence 111211 011 1111 222221 1233344556667778888876 4332 22222233 34555421
Q ss_pred cc-cCCCCHHHHHHHHHH-CCCccCC-CCC--CCCCEEEEeccCCCCHHHHHHHHccCChhHHHHhhc
Q 001989 913 KN-TAGIEPEDVAKRLMD-YGFHGPT-MSW--PVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRLK 975 (985)
Q Consensus 913 ~~-~~g~~~~~v~~~L~~-~Gi~~~~-~~~--p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~~ 975 (985)
.. .......++.++|.+ .|+.+.. ..| ..++++||+++. .++++++. .++.|.+.+++-|
T Consensus 375 ~~~~~~~~e~~l~~~ll~~~gV~v~pG~~f~~~~~g~fRi~fa~-~~~~~l~~--gl~Ri~~~l~~~~ 439 (447)
T PLN02607 375 LETPTREGELALWDSILREVKLNISPGSSCHCSEPGWFRVCFAN-MSEDTLEV--ALKRIHRFMDRRK 439 (447)
T ss_pred hcCCCchhHHHHHHHHHHhCCEEEcCccccCCCCCCEEEEEecc-CCHHHHHH--HHHHHHHHHHHHH
Confidence 00 000123467777765 6988643 222 236999999975 34788888 6677777776543
|
|
| >PRK06959 putative threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.4e-12 Score=146.19 Aligned_cols=271 Identities=14% Similarity=0.081 Sum_probs=166.8
Q ss_pred HHHHHHHHHHhCCCc-cceecCcHHH-HHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcCCCC
Q 001989 635 NNLGEWLCTITGFDS-FSLQPNAGAA-GEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAK 712 (985)
Q Consensus 635 ~e~~~~la~l~G~~~-~~~~~~sGa~-a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~d~~ 712 (985)
.++++++++.+|.+. .++..++|++ +. ..+ .+ .. .+++ |+++.+.++.+...++..|++++.++.+.
T Consensus 56 ~~L~~~ia~~~~~~~~~~I~i~~Gs~e~i-~~l--~~-~~-----~~g~-v~v~~P~y~~y~~~~~~~g~~~~~v~~~~- 124 (339)
T PRK06959 56 DGLAACAARYYGAPDAAHVLPVAGSQAAI-RAL--PA-LL-----PRGR-VGIAPLAYSEYAPAFARHGHRVVPLDEAA- 124 (339)
T ss_pred HHHHHHHHHHhCCCCcccEEECcCHHHHH-HHH--HH-hc-----CCCe-EEEcCCCcHHHHHHHHHCCCEEEeecccc-
Confidence 378899999999974 5666656655 33 222 22 11 2454 88887766666667889999999888642
Q ss_pred CCCCHHHHHHHHHhcCCCEEEEEEEcCC-CccccccCHHHHHH---HHHHcCCEEEEEccccccccCCCCCCcc-CCc--
Q 001989 713 GNINIEELRKAAEANRDNLSTLMVTYPS-THGVYEEGIDEICK---IIHDNGGQVYMDGANMNAQVGLTSPGYI-GAD-- 785 (985)
Q Consensus 713 g~iD~e~L~~~i~~~~~~t~~Vvv~~pn-~~G~i~~di~eI~~---la~~~galliVD~a~~~~~~~l~~pg~~-g~D-- 785 (985)
+. +. +.++++++++|| ++|.+- +.+++.+ .|.+++.++++|+++..-. .......+ ..+
T Consensus 125 -----~~----~~---~~~~~v~l~nPnNPTG~~~-s~~~l~~l~~~~~~~~~~vI~DEay~~~~-~~~s~~~~~~~~~v 190 (339)
T PRK06959 125 -----DT----LP---AALTHLIVVNPNNPTAERL-PAARLLRWHAQLAARGGTLIVDEAFADTL-PAASLAAHTDRPGL 190 (339)
T ss_pred -----hh----cc---ccCCEEEEeCCCCCCCCCC-CHHHHHHHHHHHHHcCCEEEEECCCccCC-CcccchhccCCCCE
Confidence 22 22 345678999995 799986 4555554 4567899999999874211 10010111 112
Q ss_pred EEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcH
Q 001989 786 VCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGS 865 (985)
Q Consensus 786 i~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~ 865 (985)
+++.|+.|.|++| |.++|++++++++.+.+.... ...++++ ....++.++|.. .
T Consensus 191 i~l~SfSK~~gl~----GlRiGy~v~~~~li~~l~~~~--------------~~~~vs~------~~q~a~~~~L~~--~ 244 (339)
T PRK06959 191 VVLRSVGKFFGLA----GVRAGFVLAAPALLAALRDAL--------------GAWTVSG------PARHAVRAAFAD--A 244 (339)
T ss_pred EEEecChhhcCCc----chheEEEecCHHHHHHHHHhc--------------CCCCCcH------HHHHHHHHHhCc--H
Confidence 5667778877554 789999999887765542110 0011211 111222233321 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCCCCCCCE
Q 001989 866 KGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGT 944 (985)
Q Consensus 866 eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~~p~~~~ 944 (985)
+-.++..+...++++++.+.|++ ++.+. . ...+ +.++++ +..++.+.|.++||.+..+. ..++
T Consensus 245 ~~~~~~~~~~~~~r~~l~~~L~~~g~~~~-~---~~~f--~~~~~~--------~~~~l~~~l~~~GI~vr~~~--~~~~ 308 (339)
T PRK06959 245 AWQAAMRERLAADGARLAALLRAHGFAVH-A---TPLF--SWTDDP--------RAAALHAALARRGIWTRYFA--PPPS 308 (339)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCcc-C---cceE--EEEeCC--------CHHHHHHHHHhCCeEEEECC--CCCe
Confidence 22334445567778889999987 44432 1 1211 223432 46789999999999986443 2479
Q ss_pred EEEeccCCCCHHHHHHHHccCChhHHHHhhcc
Q 001989 945 LMIEPTESESKSWTGIVMLSSPSEKKLHRLKM 976 (985)
Q Consensus 945 lris~t~~~t~eeId~~~~~~~l~~~~~~~~~ 976 (985)
+||+++ .+.+|+++ ++++|+++++.+.+
T Consensus 309 lRisi~--~~~~e~~~--l~~al~~~~~~~~~ 336 (339)
T PRK06959 309 VRFGLP--ADEAEWQR--LEDALAECVPTLAA 336 (339)
T ss_pred EEEECC--CCHHHHHH--HHHHHHHHHHHHhh
Confidence 999963 46789999 88899988887765
|
|
| >COG1103 Archaea-specific pyridoxal phosphate-dependent enzymes [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.6e-12 Score=133.80 Aligned_cols=277 Identities=20% Similarity=0.221 Sum_probs=178.1
Q ss_pred HHHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc--
Q 001989 211 ESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL-- 288 (985)
Q Consensus 211 ~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~-- 288 (985)
..|..|-..+++++|||. +-.+.|+-.+=.|+.-++. ++||-|+++.++|-+..-+. ++.|+++..+|-
T Consensus 61 PpI~~F~~dlaeFlg~D~--~R~t~GARe~KfavMhal~---~~gd~vV~D~~aHYttyvAA----Eragl~v~eVp~tg 131 (382)
T COG1103 61 PPIKDFLEDLAEFLGMDE--VRVTAGAREAKFAVMHALC---KEGDWVVVDSLAHYTTYVAA----ERAGLNVAEVPNTG 131 (382)
T ss_pred CcHHHHHHHHHHHhCCce--eeecccchhhHHHHHHHhc---cCCCEEEEcCcchHHHHHHH----HhcCCeEEecCCCC
Confidence 346677788999999998 5667777766666554553 48999999999997665443 456889988863
Q ss_pred --------h----hhhc-c---CCCEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEE-EecCccccCC-CCCCcccc
Q 001989 289 --------K----DIDY-K---SGDVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVM-ATDLLALTIL-KPPGELGA 349 (985)
Q Consensus 289 --------~----~l~~-l---~~~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV-~a~~~~lg~l-~~~~~~Ga 349 (985)
+ -+++ . .+..++.++|++ ..+|.+.|.+.++++||++|+++++ ++. +.|-+ .+..+.|+
T Consensus 132 ~Pey~i~~e~y~~viee~~~~~g~~~~lallTh~Dg~YGNl~Dakkva~ic~e~gvPlllN~AY--t~Grmpvs~ke~g~ 209 (382)
T COG1103 132 YPEYKITPEGYAEVIEEVKDEGGDPPALALLTHVDGEYGNLADAKKVAKICREYGVPLLLNCAY--TVGRMPVSGKEIGA 209 (382)
T ss_pred CCceEecHHHHHHHHHHHHhccCCCceEEEEeccCCCcCCchhhHHHHHHHHHcCCceEeecce--eeccccccccccCC
Confidence 1 1222 1 234677789999 5699999999999999999999999 443 45533 34578999
Q ss_pred eEEEecC-ccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccch--hHH
Q 001989 350 DIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTA--QAL 426 (985)
Q Consensus 350 Di~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~--~~l 426 (985)
|++|+|+ |++.. .|| +|+++.++++.+..- |..| +. |. ..|- -.--||. .++
T Consensus 210 DFiVgSGHKsmAA----s~P-iGvl~~~eE~ae~V~-r~Sg-------~~-~~----------~KEv-ellGCT~rGapi 264 (382)
T COG1103 210 DFIVGSGHKSMAA----SAP-IGVLAMSEEWAEIVL-RRSG-------RA-FP----------KKEV-ELLGCTVRGAPI 264 (382)
T ss_pred CEEEecCccchhc----cCC-eeEEeehhHHHHHHH-hhcc-------cc-cc----------ccee-eeecccccCchH
Confidence 9999999 87753 222 689999998876531 1111 10 10 0000 0112443 334
Q ss_pred HHHHHHH-HHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCC-CCcce-EEEecCCHHHHHHHHHHcCceeee--
Q 001989 427 LANMAAM-YAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGL-PFFDT-VKVKCADAHAIASAAYKIEMNLRV-- 501 (985)
Q Consensus 427 ~a~~aa~-~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~-~~~~~-~~~~~~~~~~v~~~L~~~GI~~~~-- 501 (985)
.-++|+. +.. +- -..++...++++++.++|+++||++.++. |.-+. +.|..|.-.+|++.-..+|+++..
T Consensus 265 vTlmASfP~V~----eR-VkrWdeEv~kaR~fv~elEkigg~~qlG~rPk~HdLm~Fetp~f~eIakk~~r~gyFlY~EL 339 (382)
T COG1103 265 VTLMASFPHVV----ER-VKRWDEEVEKARWFVAELEKIGGVKQLGERPKNHDLMKFETPVFHEIAKKHKRKGYFLYEEL 339 (382)
T ss_pred HHHHhcCHHHH----HH-HHHHHHHHHHHHHHHHHHHHhhhHHHhCCCCcccceeeecCchHHHHHHhCcCCceeeHHHH
Confidence 4555554 111 11 13455567899999999999987887753 43333 445555455555554444554311
Q ss_pred -------ecC---CeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 502 -------VDS---NTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 502 -------~~~---~~lris~t~~~t~edId~li~aL~~ 529 (985)
+.+ ..+-+| ++.-+.|+++..++++++
T Consensus 340 K~RgI~GI~~G~Tk~~K~s-vyGl~~Eqve~V~~afke 376 (382)
T COG1103 340 KKRGIHGIQPGQTKYFKLS-VYGLSWEQVEYVVDAFKE 376 (382)
T ss_pred HhcCccccccCceeEEEEE-eecCCHHHHHHHHHHHHH
Confidence 011 234444 345689999999999874
|
|
| >PRK09275 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.8e-12 Score=152.83 Aligned_cols=328 Identities=13% Similarity=0.070 Sum_probs=177.3
Q ss_pred hhHHHHHHHHHHHH-HHHhCC--Cc---cceec-CcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHC
Q 001989 628 QGYQEMFNNLGEWL-CTITGF--DS---FSLQP-NAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMC 700 (985)
Q Consensus 628 ~G~~~~~~e~~~~l-a~l~G~--~~---~~~~~-~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~ 700 (985)
.|..++.+++.+.. .+..+. +. .+++. +++++|...++.++..- .- .++||+|+++++.+..+...+++.
T Consensus 134 ~g~~~lreaia~~~~~~~~~~~~~~~~~~~I~vT~Ga~~al~~~~~aL~~~--~l-l~pGD~Vlv~~P~y~~Y~~~~~l~ 210 (527)
T PRK09275 134 DRMLKHTEKIVKDYLRQEMCGGRPPKGEFDLFAVEGGTAAMCYIFDSLKEN--GL-LKAGDKIALMTPIFTPYLEIPELP 210 (527)
T ss_pred CCCHHHHHHHHHHHHHhhccCCCCCCCcCeEEEeCCHHHHHHHHHHHHhhh--hc-CCCCCEEEEeCCChHHHHHHHHHc
Confidence 57666666665533 332222 11 14444 45555654444432110 00 147899999998776666666666
Q ss_pred C--cEEEEEcCCC--CCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccc--cCHHHHHHHHHH--cCCEEEEEccccc
Q 001989 701 G--MKIVSVGTDA--KGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYE--EGIDEICKIIHD--NGGQVYMDGANMN 771 (985)
Q Consensus 701 G--~~vv~v~~d~--~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~--~di~eI~~la~~--~galliVD~a~~~ 771 (985)
| ++++.++.++ ++.+|+++|+++++ +++++|++++| |++|.+. ..+++|+++|++ +|++++.|.++..
T Consensus 211 g~~~~~v~v~~~~~~~f~~d~~~l~~~~~---~~tkai~l~nP~NPTG~v~s~e~l~~I~~ia~~~~~~l~II~DEvY~~ 287 (527)
T PRK09275 211 RYDLEVVHINADEENEWQYPDSELEKLRD---PSIKALFLVNPSNPPSVAMSDESLEKIADIVNEKRPDLMIITDDVYGT 287 (527)
T ss_pred CCCeEEEEeecCcccCCCCCHHHHHhhcC---CCCCEEEEeCCcCCcCCCCCHHHHHHHHHHHHhcCCCcEEEECCCChh
Confidence 5 5566665543 37899999999887 88999999999 5799986 247888888954 5999999998732
Q ss_pred cccCCCCCCc-c-CCcEEEeCCcccccccCCCCCCceEEEEEccc-----ccCcCCC--------CccccCCCC--C---
Q 001989 772 AQVGLTSPGY-I-GADVCHLNLHKTFCIPHGGGGPGMGPIGVKKH-----LAPFLPS--------HPVVSTGGI--P--- 831 (985)
Q Consensus 772 ~~~~l~~pg~-~-g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~-----l~~~lp~--------~~~g~~~~~--~--- 831 (985)
-......... + .--+++.|+.|+|++| |+++|++++.++ ++..+|. ++-..+.+. .
T Consensus 288 f~~~~~s~~~~~~~~~I~v~SfSK~f~mt----G~RlG~i~~~~~~v~~~~i~~l~~~~~~~~~~ry~~~~~~p~~~~fi 363 (527)
T PRK09275 288 FVDDFRSLFAVLPYNTILVYSFSKYFGAT----GWRLGVIALHEDNVFDKLIAKLPEEKKKELDKRYSSLTTDPEKLKFI 363 (527)
T ss_pred hcccccCHHHhCCCCEEEEeehhhhccCc----HhHHhhhhcCchhHHHHHHHhccHHHHHHHHhhhhhccCCcchhhhH
Confidence 1111111111 1 1236778889998764 899999998875 4433321 000000000 0
Q ss_pred CC-----C--CCCCCCCCCCcchhhhHHHHHHH-HHHHHhcHHHHHHHHHHHHHHHHHHHHHhhccCCeeecCCCCceee
Q 001989 832 AP-----E--KSQPLGTIAAAPWGSALILPISY-TYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAH 903 (985)
Q Consensus 832 ~~-----~--~~~~~~~i~s~~~g~~~~~~~a~-a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~g~~l~~~~~~~~~~~ 903 (985)
.+ + ....+.+.++ ..|...+..+. +.+. -+.+-..+..+...++.+.+.+.|. ..+....+.+.++
T Consensus 364 drlvad~~~v~~~~t~~~s~--p~Q~a~al~~~~all~-~~~~~~~~~~~~~~~Rr~~l~~~Lg--~~~~~~~p~g~fY- 437 (527)
T PRK09275 364 DRLVADSRQVALNHTAGLST--PQQVQMALFSLFALLD-EEDAYKKAMKDIIRRRYKALYEGLG--LPEPEDPNNAAYY- 437 (527)
T ss_pred HHHHHHHHHHHHhhccCCCC--HHHHHHHHHHHHHHHh-CchHHHHHHHHHHHHHHHHHHHHcC--CCCcCCCCCeeEE-
Confidence 00 0 0011122221 11221111111 1122 1223334444556666677777773 3332112233333
Q ss_pred EEEEEecCccc-----------cCCCCHHHHHHHHHHC-CCcc-CCCCCC-CCCEEEEeccCCCCHHHHHHHHccCChhH
Q 001989 904 EFIVDLRGLKN-----------TAGIEPEDVAKRLMDY-GFHG-PTMSWP-VPGTLMIEPTESESKSWTGIVMLSSPSEK 969 (985)
Q Consensus 904 ~~iv~~~~~~~-----------~~g~~~~~v~~~L~~~-Gi~~-~~~~~p-~~~~lris~t~~~t~eeId~~~~~~~l~~ 969 (985)
+.++++.+.. ..+.+..+++.+|.++ |+.+ ++..|. ..+++|||+.. .+++++.. ..+.|.+
T Consensus 438 -~~~di~~~~~~~~g~~f~~~l~~~~~~~~f~~~Ll~e~gV~v~PG~~Fg~~~~~vRis~a~-~~~~~~~~--~~~rl~~ 513 (527)
T PRK09275 438 -TLIDLEEWAEKNYGKEFADYLKKNYSPVDLLFRLAEETGVVLLPGGGFGGPEWSVRVSLAN-LNEEDYAK--IGKAIRK 513 (527)
T ss_pred -EEEEhHHhhhhccCchhhhhhhccCCHHHHHHHHHhcCCEEEeCchhhCCCCCeEEEEEec-CCHHHHHH--HHHHHHH
Confidence 2344432100 0023577888888875 7764 333342 25789999843 35677777 5566666
Q ss_pred HHHhhc
Q 001989 970 KLHRLK 975 (985)
Q Consensus 970 ~~~~~~ 975 (985)
++.+.+
T Consensus 514 ~l~~y~ 519 (527)
T PRK09275 514 LLDEYY 519 (527)
T ss_pred HHHHHH
Confidence 665543
|
|
| >PRK07908 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=9.4e-12 Score=142.08 Aligned_cols=298 Identities=14% Similarity=0.118 Sum_probs=183.7
Q ss_pred CCCCCCCCCcHHHHHHHHhCCccccccCCChhhHhhhHHHHHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhh
Q 001989 172 GMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQ 251 (985)
Q Consensus 172 G~g~y~~~~p~~v~~~i~~~~~~~t~~~pyq~e~sqg~l~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~ 251 (985)
..+..+...|+.+.+.+.....-+..|.+. +| ..++++.+|+.+|.++.++.++.|++.++..+.. +.
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~-----~g----~~~lr~aia~~~~~~~~~I~it~Ga~~al~~~~~---l~ 95 (349)
T PRK07908 28 AVNVRHDTPPEWLRERLAARLGDLAAYPST-----ED----ERRARAAVAARHGRTPDEVLLLAGAAEGFALLAR---LR 95 (349)
T ss_pred cCCCCCCCCCHHHHHHHHHHhhHhhcCCCc-----cc----hHHHHHHHHHHhCcChhhEEECCCHHHHHHHHHh---cC
Confidence 445445557776655554332223344332 12 3457789999999999999999999976654333 32
Q ss_pred cCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCchh---h--hccCCCEeEEEEEcC-CCCeeeccHHHHHHHHHhC
Q 001989 252 KGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDLKD---I--DYKSGDVCGVLVQYP-GTEGEVLDYGDFIKNAHAN 325 (985)
Q Consensus 252 ~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~~~---l--~~l~~~t~~V~v~~p-n~~G~v~di~~I~~~a~~~ 325 (985)
+ +++++. ||++...+.. ++..|++++.++.++ + +.+.++++++++.+| |.+|.+.+.++|.++|++
T Consensus 96 --~-~~viv~---~P~y~~~~~~-~~~~G~~i~~v~~~~~~~~d~~~l~~~~~~i~l~np~NPTG~~~~~~~l~~l~~~- 167 (349)
T PRK07908 96 --P-RRAAVV---HPSFTEPEAA-LRAAGIPVHRVVLDPPFRLDPAAVPDDADLVVIGNPTNPTSVLHPAEQLLALRRP- 167 (349)
T ss_pred --C-CeEEEe---CCCChHHHHH-HHHcCCEEEeeccCcccCcChhHhccCCCEEEEcCCCCCCCCCcCHHHHHHHHhc-
Confidence 5 456665 4555544432 345799998887642 1 125567889999888 789999999999999975
Q ss_pred CcEEEEEecCcc---ccCCCCCC--cccceEEEecC-ccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcc
Q 001989 326 GVKVVMATDLLA---LTILKPPG--ELGADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPA 399 (985)
Q Consensus 326 galliV~a~~~~---lg~l~~~~--~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~ 399 (985)
+.++++| +..+ .+-..+.. +.+--++++|. |.|+.| |.-+||+++++++++.+.... .
T Consensus 168 ~~~iIvD-e~y~~~~~~~~~~l~~~~~~~~i~i~S~SK~~~l~----GlRiG~~~~~~~~~~~~~~~~----------~- 231 (349)
T PRK07908 168 GRILVVD-EAFADAVPGEPESLAGDDLPGVLVLRSLTKTWSLA----GLRVGYALGAPDVLARLTRGR----------A- 231 (349)
T ss_pred CCEEEEE-CcchhhccCCccccccccCCCEEEEeecccccCCc----cceeeeeecCHHHHHHHHhcC----------C-
Confidence 7888884 3222 11111111 12223556675 877532 345699999888776652100 0
Q ss_pred eeeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCCCcceEE
Q 001989 400 LRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDTVK 479 (985)
Q Consensus 400 ~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~~~~~~~ 479 (985)
..++++. ...++ ..++.-.+.+-++++.++..++.+++.+.|+++| +++..++...-+.
T Consensus 232 -----------------~~~~~~~-~~~a~--~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~-~~~~~p~~g~~~~ 290 (349)
T PRK07908 232 -----------------HWPVGTL-QLEAI--AACCAPRAVAEAAADAARLAADRAEMVAGLRAVG-ARVVDPAAAPFVL 290 (349)
T ss_pred -----------------CCCccHH-HHHHH--HHHhcccchHHHHHHHHHHHHHHHHHHHHHHhCC-cEeccCCCceEEE
Confidence 0112111 11111 1111111122356677888888999999999886 8776432222344
Q ss_pred EecCCHHHHHHHHHHcCceeeee------cCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 480 VKCADAHAIASAAYKIEMNLRVV------DSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 480 ~~~~~~~~v~~~L~~~GI~~~~~------~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
++.++..++.+.|.++||.+... .++.+|+|++ +.+|+++|+++|+.
T Consensus 291 ~~~~~~~~~~~~l~~~gI~v~~g~~f~~~~~~~vRis~~---~~~~~~~l~~al~~ 343 (349)
T PRK07908 291 VRVPDAELLRKRLRERGIAVRRGDTFPGLDPDYLRLAVR---PRAEVPVLVQALAE 343 (349)
T ss_pred EECCcHHHHHHHHHhCCEEEEECCCCCCCCCCeEEEEeC---CCccHHHHHHHHHH
Confidence 55555678888999999987542 2478999994 78899999999974
|
|
| >PRK05664 threonine-phosphate decarboxylase; Reviewed | Back alignment and domain information |
|---|
Probab=99.48 E-value=4.4e-12 Score=143.61 Aligned_cols=269 Identities=15% Similarity=0.098 Sum_probs=164.9
Q ss_pred HHHHHHHHHHhCCCccceecCcHHH-HHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcCCCCC
Q 001989 635 NNLGEWLCTITGFDSFSLQPNAGAA-GEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKG 713 (985)
Q Consensus 635 ~e~~~~la~l~G~~~~~~~~~sGa~-a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~d~~g 713 (985)
.++++.+++.+|.+ .+..++|++ +.. ++++. .++++|+++++.++.+...++..|++++.+|.+
T Consensus 52 ~~Lr~~ia~~~~~~--~I~it~Gs~~al~---~~~~~-------~~gd~v~v~~P~y~~~~~~~~~~g~~~~~v~~~--- 116 (330)
T PRK05664 52 DGLEAAARAYYGAP--QLLPVAGSQAAIQ---ALPRL-------RAPGRVGVLSPCYAEHAHAWRRAGHQVRELDEA--- 116 (330)
T ss_pred HHHHHHHHHHhCCC--CEEECcCHHHHHH---HHHHc-------cCCCEEEEcCCChHHHHHHHHHcCCeEEEechh---
Confidence 36788899999875 344444554 432 22221 367899999987777777788999999888753
Q ss_pred CCCHHHHHHHHHhcCCCEEEEEEEcCC-Cccccc--cCHHHHHHHHHHcCCEEEEEccccccccCCCCCCcc-C-Cc-EE
Q 001989 714 NINIEELRKAAEANRDNLSTLMVTYPS-THGVYE--EGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYI-G-AD-VC 787 (985)
Q Consensus 714 ~iD~e~L~~~i~~~~~~t~~Vvv~~pn-~~G~i~--~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~-g-~D-i~ 787 (985)
+++++++ +++++++++|| ++|.+- .++++|.++|+++|+++++|.++.... .......+ . .. ++
T Consensus 117 -----~~~~~~~----~~~~v~l~nP~NPTG~~~s~~~l~~l~~~~~~~~~~iI~DE~y~~~~-~~~s~~~~~~~~~vi~ 186 (330)
T PRK05664 117 -----EVEAALD----SLDVLVVVNPNNPTGRRFDPARLLAWHARLAARGGWLVVDEAFMDNT-PQHSLAACAHRPGLIV 186 (330)
T ss_pred -----hHhhhhc----CCCEEEEeCCcCCCCCccCHHHHHHHHHHHHhcCCEEEEECCcccCC-CcccccccccCCCEEE
Confidence 4555553 56678889994 799986 246677777889999999999874211 10011111 1 12 66
Q ss_pred EeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHH
Q 001989 788 HLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKG 867 (985)
Q Consensus 788 ~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eG 867 (985)
+.|+.|+|++| |.++|++++++++.+.+.... ...++++ ....++.++|.. .+-
T Consensus 187 ~~SfSK~~gl~----GlRiG~~v~~~~l~~~~~~~~--------------~~~~~~~------~~~~~~~~~L~~--~~~ 240 (330)
T PRK05664 187 LRSFGKFFGLA----GARLGFVLAEPALLRALAELL--------------GPWTVSG------PTRWLAQAALAD--TPW 240 (330)
T ss_pred EeeccccccCC----CcceEEEEeCHHHHHHHHHhc--------------CCCCCCH------HHHHHHHHHHhC--hHH
Confidence 77888888654 789999999877665442110 0011111 111112223321 122
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCCCCCCCEEEE
Q 001989 868 LTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMI 947 (985)
Q Consensus 868 l~~~~~~~~~~a~~l~~~L~~g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~~p~~~~lri 947 (985)
.++..++..++++++.+.|++. ++...+ +..+ -+.+..+ +..++.+.|.++||.+... ..++++||
T Consensus 241 ~~~~~~~~~~~r~~l~~~L~~~-~~~~~~--~~~~-f~~~~~~--------~~~~~~~~l~~~gi~v~~f--~~~~~iRi 306 (330)
T PRK05664 241 QRRQRERLLAASQRLAALLRRH-GLTPAG--GCAL-FQWVRTE--------DAAALHEFLARRGILTRLF--EQPASLRF 306 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHC-CCcccC--Ccce-EEEEecC--------CHHHHHHHHHHCCeEEEEC--CCCCeEEE
Confidence 3444555667788899989872 221111 1111 1223221 5688999999999998543 23479999
Q ss_pred eccCCCCHHHHHHHHccCChhHHHH
Q 001989 948 EPTESESKSWTGIVMLSSPSEKKLH 972 (985)
Q Consensus 948 s~t~~~t~eeId~~~~~~~l~~~~~ 972 (985)
++.. +.+++++ +.+.|+++.+
T Consensus 307 s~~~--~~~~~~~--l~~al~~~~~ 327 (330)
T PRK05664 307 GLPA--DEADWAR--LDQALLAYRK 327 (330)
T ss_pred ECCC--CHHHHHH--HHHHHHHHHh
Confidence 9864 6888999 6666666544
|
|
| >TIGR03539 DapC_actino succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Probab=99.48 E-value=3.7e-12 Score=145.82 Aligned_cols=277 Identities=15% Similarity=0.125 Sum_probs=164.5
Q ss_pred hhhHHHHHHHHHHHHHHHhCCC---ccceecCcHHH-HHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCc
Q 001989 627 AQGYQEMFNNLGEWLCTITGFD---SFSLQPNAGAA-GEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGM 702 (985)
Q Consensus 627 ~~G~~~~~~e~~~~la~l~G~~---~~~~~~~sGa~-a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~ 702 (985)
.+|..++.+++.+++.+..|.+ ...+..++|++ +.. .+++.+. ..++|+|+++++.|..+...++..|+
T Consensus 55 ~~G~~~lr~~ia~~~~~~~~~~~~~~~~I~it~G~~~~i~---~~~~~l~----~~~gd~Vl~~~p~y~~~~~~~~~~g~ 127 (357)
T TIGR03539 55 TWGTPELREAIVDWLERRRGVPGLDPTAVLPVIGTKELVA---WLPTLLG----LGPGDTVVIPELAYPTYEVGALLAGA 127 (357)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCCCCcCeEEEccChHHHHH---HHHHHHc----CCCCCEEEECCCCcHHHHHHHHhcCC
Confidence 3576677777777777766654 34555555544 432 2222220 14789999999877777666778899
Q ss_pred EEEEEcCCCCCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCcccccc--CHHHHHHHHHHcCCEEEEEccccc-cccC--C
Q 001989 703 KIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEE--GIDEICKIIHDNGGQVYMDGANMN-AQVG--L 776 (985)
Q Consensus 703 ~vv~v~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~--di~eI~~la~~~galliVD~a~~~-~~~~--l 776 (985)
+++.++ |++.+. . +++++|++++| |++|.+.+ ++++|.++|+++|+++++|+++.. ...+ .
T Consensus 128 ~~~~v~-------~~~~l~---~---~~~~~v~~~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~ 194 (357)
T TIGR03539 128 TPVAAD-------DPTELD---P---VGPDLIWLNSPGNPTGRVLSVDELRAIVAWARERGAVVASDECYLELGWEGRPV 194 (357)
T ss_pred EEeccC-------ChhhcC---c---cCccEEEEeCCCCCcCccCCHHHHHHHHHHHHHcCeEEEEecchhhhccCCCCc
Confidence 887664 333322 1 57889999998 57998761 477899999999999999998731 1111 0
Q ss_pred --CCC----CccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhh
Q 001989 777 --TSP----GYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSA 850 (985)
Q Consensus 777 --~~p----g~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~ 850 (985)
..+ +...--+++.|++|.|++ .|.++|++++++++...+.... . . ...+.+..++.
T Consensus 195 ~~~~~~~~~~~~~~vi~~~S~SK~~~~----~G~R~G~~i~~~~~~~~~~~~~------------~-~-~~~~~~~~~q~ 256 (357)
T TIGR03539 195 SILDPRVCGGDHTGLLAVHSLSKRSNL----AGYRAGFVAGDPALVAELLTVR------------K-H-AGLMVPAPVQA 256 (357)
T ss_pred cceecccCCCccccEEEEeccccccCC----CceeEEEEecCHHHHHHHHHHH------------h-h-cccCCCHHHHH
Confidence 011 111123777888898854 3688999998876654432100 0 0 01111111121
Q ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHH
Q 001989 851 LILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMD 929 (985)
Q Consensus 851 ~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~ 929 (985)
++.++|. ..+.+++..+...++++++.+.|++ ++.+. .+.+..+ +.+..+ .+..++.+.|.+
T Consensus 257 ----~~~~~l~--~~~~~~~~~~~~~~~~~~~~~~L~~~g~~~~--~p~~~~~--~~~~~~-------~~~~~~~~~l~~ 319 (357)
T TIGR03539 257 ----AMVAALG--DDGHVAEQKARYAARRAQLKPALEKAGFRID--HSEAGLY--LWATRG-------EDAWDTVDRLAE 319 (357)
T ss_pred ----HHHHHcC--CHHHHHHHHHHHHHHHHHHHHHHHHcCCCCc--CCCccEE--EEEECC-------CCHHHHHHHHHh
Confidence 1112222 1233444445556777888888876 44432 2222222 223332 256788999999
Q ss_pred CCCccCCCC-C--CCCCEEEEeccCCCCHHHHHH
Q 001989 930 YGFHGPTMS-W--PVPGTLMIEPTESESKSWTGI 960 (985)
Q Consensus 930 ~Gi~~~~~~-~--p~~~~lris~t~~~t~eeId~ 960 (985)
+||.+.... | +..+++||++.. +.++|++
T Consensus 320 ~gV~v~pg~~f~~~~~~~iRis~~~--~~~~i~~ 351 (357)
T TIGR03539 320 LGILVAPGDFYGPAGSQHVRVALTA--TDERIAA 351 (357)
T ss_pred CCEEECCccccCCCCCCeEEEEecC--CHHHHHH
Confidence 999875432 2 124799999865 5788888
|
This family of actinobacterial succinyldiaminopimelate transaminase enzymes (DapC) are members of the pfam00155 superfamily. Many of these genes appear adjacent to other genes encoding enzymes of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). |
| >PRK03158 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.4e-11 Score=141.16 Aligned_cols=267 Identities=13% Similarity=0.058 Sum_probs=174.9
Q ss_pred HHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc----
Q 001989 213 LLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL---- 288 (985)
Q Consensus 213 i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~---- 288 (985)
..++++.+|+++|.++.++.+++|++.++..+..++ . ++||+|+++.-.++.+...++ ..|.++..++.
T Consensus 66 ~~~lr~~ia~~~~~~~~~i~~t~G~~~~l~~~~~~~-~--~~gd~v~~~~p~y~~~~~~~~----~~g~~~~~~~~~~~~ 138 (359)
T PRK03158 66 APELRTKVAKHLGVDEEQLLFGAGLDEVIQMISRAL-L--NPGTNTVMAEPTFSQYRHNAI----IEGAEVREVPLKDGG 138 (359)
T ss_pred HHHHHHHHHHHhCCCHHHEEECCCHHHHHHHHHHHH-h--CCCCEEEEcCCCHHHHHHHHH----HcCCeEEEEecCCCC
Confidence 345778999999998889999999987776555443 2 378999999988888776654 35777777754
Q ss_pred ---hhhhc-cCCCEeEEEEEcC-CCCeeeccHHHHHHHHHh--CCcEEEEEecCccccCCC----CC----CcccceEEE
Q 001989 289 ---KDIDY-KSGDVCGVLVQYP-GTEGEVLDYGDFIKNAHA--NGVKVVMATDLLALTILK----PP----GELGADIVV 353 (985)
Q Consensus 289 ---~~l~~-l~~~t~~V~v~~p-n~~G~v~di~~I~~~a~~--~galliV~a~~~~lg~l~----~~----~~~GaDi~v 353 (985)
+++++ +++++++|++.+| |.+|.+.+.++|.++++. +|+++++| +........ .+ ...+-.|++
T Consensus 139 ~d~~~l~~~~~~~~~~v~i~~p~NPtG~~~~~~~l~~~~~~~~~~~~ii~D-e~y~~~~~~~~~~~~~~~~~~~~~vi~~ 217 (359)
T PRK03158 139 HDLEAMLKAIDEQTKIVWICNPNNPTGTYVNHEELLSFLESVPSHVLVVLD-EAYYEYVTAEDYPDTLPLLEKYENLIVL 217 (359)
T ss_pred cCHHHHHHhcCCCCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCcEEEEE-CchHhhcCCcccccHHHHHHhcCCEEEE
Confidence 34555 6778999999998 789999999999998887 48888884 222111110 11 123456788
Q ss_pred ecC-ccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHH
Q 001989 354 GSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAA 432 (985)
Q Consensus 354 ~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa 432 (985)
.|. |.|+.| |--+|++.+++++++.+-. .+.+ .+++......++.
T Consensus 218 ~S~SK~~g~~----GlRiG~~v~~~~~~~~~~~----------------------------~~~~--~~~~~~~q~~~~~ 263 (359)
T PRK03158 218 RTFSKAYGLA----ALRVGYGIASEELIEKLNI----------------------------ARPP--FNTTRIAQYAAIA 263 (359)
T ss_pred EechHhhcCc----chhhehhcCCHHHHHHHHH----------------------------hcCC--CCCCHHHHHHHHH
Confidence 886 877532 1123898888777665410 0011 1122221111111
Q ss_pred HHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCCCcceEEEecCC-HHHHHHHHHHcCceeeee----cCCeE
Q 001989 433 MYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDTVKVKCAD-AHAIASAAYKIEMNLRVV----DSNTV 507 (985)
Q Consensus 433 ~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~-~~~v~~~L~~~GI~~~~~----~~~~l 507 (985)
+ + ...+-++++.++..++.+++.+.|++.| +++.... ..-+.+..+. ..++.+.|.++||.+... .++.+
T Consensus 264 ~-l--~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~-g~~i~~~~~~~~~~~~~~l~~~gv~v~~g~~f~~~~~i 338 (359)
T PRK03158 264 A-L--EDQAFLKECVEKNAEGLEQYYAFCKEYG-LFYYPSQ-TNFIFVDTGRDANELFEALLKKGYIVRSGAALGFPTGV 338 (359)
T ss_pred H-h--cCHHHHHHHHHHHHHHHHHHHHHHHHCC-CeeCCCc-CcEEEEECCCCHHHHHHHHHHCCeEEeeCCCCCCCCeE
Confidence 1 1 1122245666666777778888888886 7765321 1113344443 788999999999988652 25789
Q ss_pred EEEeccCCCHHHHHHHHHHHhC
Q 001989 508 TASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 508 ris~t~~~t~edId~li~aL~~ 529 (985)
|+++. +.+|+++++++|++
T Consensus 339 Ri~~~---~~~~~~~l~~al~~ 357 (359)
T PRK03158 339 RITIG---LKEQNDKIIELLKE 357 (359)
T ss_pred EEecC---CHHHHHHHHHHHHH
Confidence 99977 89999999999974
|
|
| >PRK03967 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.4e-12 Score=146.13 Aligned_cols=271 Identities=15% Similarity=0.165 Sum_probs=169.6
Q ss_pred HHHHHHHHHHhCCCccceecCcHHH-HHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcCCCCC
Q 001989 635 NNLGEWLCTITGFDSFSLQPNAGAA-GEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKG 713 (985)
Q Consensus 635 ~e~~~~la~l~G~~~~~~~~~sGa~-a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~d~~g 713 (985)
.++++++++++|.+..++..++|++ +. .++++.+ ++++|+++.+.|+.+...++..|++++.++.+.++
T Consensus 58 ~~lr~~ia~~~~~~~~~I~~t~G~~~~l---~~~~~~~-------~gd~V~v~~P~y~~~~~~~~~~g~~~~~v~~~~~~ 127 (337)
T PRK03967 58 DPLREAIAEFYGLDAENIAVGNGSDELI---SYLVKLF-------EGKHIVITPPTFGMYSFYAKLNGIPVIDVPLKEDF 127 (337)
T ss_pred HHHHHHHHHHhCcCcceEEEcCCHHHHH---HHHHHHh-------CCCeEEEeCCChHHHHHHHHHcCCeEEEeecCCCC
Confidence 3677888899998876666666655 33 2223321 46889999887766666678899999999998778
Q ss_pred CCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCC--CccCC-cEEEe
Q 001989 714 NINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSP--GYIGA-DVCHL 789 (985)
Q Consensus 714 ~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~p--g~~g~-Di~~~ 789 (985)
.+|++++++++ ++++++++++| |++|.+. +.++|.++++ +|+++++|+++.. +..-..+ ..... -+++.
T Consensus 128 ~~d~~~l~~~~----~~~~~v~~~~P~NPtG~~~-~~~~l~~i~~-~~~~ii~De~y~~-~~~~~~~~~~~~~~~vi~l~ 200 (337)
T PRK03967 128 TIDGERIAEKA----KNASAVFICSPNNPTGNLQ-PEEEILKVLE-TGKPVVLDEAYAE-FSGKSLIGLIDEYPNLILLR 200 (337)
T ss_pred CcCHHHHHHhc----cCCCEEEEeCCCCCCCCCC-CHHHHHHHHh-cCCEEEEECchhh-hcccchHHHHhhCCCEEEEe
Confidence 89999998865 46788889999 5799998 7999999995 6999999998741 1110000 01111 25667
Q ss_pred CCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHHHH
Q 001989 790 NLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLT 869 (985)
Q Consensus 790 s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl~ 869 (985)
|+.|+|++| |.++|++++++++...+... . ...+++ ..++ .++...+. ..+-+.
T Consensus 201 S~SK~~~l~----GlRiG~iv~~~~~i~~~~~~------------~--~~~~~~--~~~q----~~~~~~l~--~~~~~~ 254 (337)
T PRK03967 201 TFSKAFGLA----GIRAGYAIANEEIIDALYRI------------K--PPFSLN--ILTM----KIVRLALD--HYDLIE 254 (337)
T ss_pred cchHhhcch----hhhheeeecCHHHHHHHHhh------------c--CCCCCC--HHHH----HHHHHHHh--CHHHHH
Confidence 888888654 78899999987665443211 0 001111 1111 11112222 222333
Q ss_pred HHHHHHHHHHHHHHHHhhccCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCCCCCCCEEEEec
Q 001989 870 EASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEP 949 (985)
Q Consensus 870 ~~~~~~~~~a~~l~~~L~~g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~~p~~~~lris~ 949 (985)
+..+...++++.+.+.|.+. ..+ + +..+ +.+.+ .+.+.|.++||.+........+++||++
T Consensus 255 ~~~~~~~~~r~~l~~~L~~~---~~~-~-~~~~--~~~~~------------~~~~~l~~~gi~v~~~~~~~~~~~Ri~~ 315 (337)
T PRK03967 255 ERIDYIIKERERVRRELGEY---AYP-S-DANF--LLLKL------------DAYDYLLENGIVVRKLSGRLEGHIRVTV 315 (337)
T ss_pred HHHHHHHHHHHHHHHHhccC---cCC-C-CCcE--EEEhH------------HHHHHHHHCCEEEEeCCCCCCCeEEEec
Confidence 33444556667777777652 111 1 2222 22221 2678888999987543222247899998
Q ss_pred cCCCCHHHHHHHHccCChhHHHH
Q 001989 950 TESESKSWTGIVMLSSPSEKKLH 972 (985)
Q Consensus 950 t~~~t~eeId~~~~~~~l~~~~~ 972 (985)
.+.++.++ +++.|+++.+
T Consensus 316 ---~~~~~~~~--l~~~l~~~~~ 333 (337)
T PRK03967 316 ---GKREENDE--FIKALKEIKE 333 (337)
T ss_pred ---CCHHHHHH--HHHHHHHHHH
Confidence 46778888 6666666554
|
|
| >PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions | Back alignment and domain information |
|---|
Probab=99.48 E-value=4.6e-12 Score=145.36 Aligned_cols=282 Identities=17% Similarity=0.161 Sum_probs=181.2
Q ss_pred HHHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCch-
Q 001989 211 ESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDLK- 289 (985)
Q Consensus 211 ~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~~- 289 (985)
..+.+|++.+++++|.+. +..+++||+++.+++.++.+. +||+|++|...++++..++.. .|.+++++|++
T Consensus 25 ~~~~~fE~~~a~~~g~~~--~~~~~sgt~Al~~al~~l~~~--~gdeVi~p~~t~~~~~~ai~~----~G~~pv~~Di~~ 96 (363)
T PF01041_consen 25 PYVEEFEKEFAEYFGVKY--AVAVSSGTSALHLALRALGLG--PGDEVIVPAYTFPATASAILW----AGAEPVFVDIDP 96 (363)
T ss_dssp HHHHHHHHHHHHHHTSSE--EEEESSHHHHHHHHHHHTTGG--TTSEEEEESSS-THHHHHHHH----TT-EEEEE-BET
T ss_pred HHHHHHHHHHHHHhCCCe--EEEeCChhHHHHHHHHhcCCC--cCceEecCCCcchHHHHHHHH----hccEEEEEeccC
Confidence 345668899999999654 888999999999999887765 899999999999999999854 59999998763
Q ss_pred --------hhhc-cCCCEeEEEEEcCCCCeeeccHHHHHHHHHhCCcEEEEEecCccccCC---CCCCcccceEEEecC-
Q 001989 290 --------DIDY-KSGDVCGVLVQYPGTEGEVLDYGDFIKNAHANGVKVVMATDLLALTIL---KPPGELGADIVVGSA- 356 (985)
Q Consensus 290 --------~l~~-l~~~t~~V~v~~pn~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l---~~~~~~GaDi~v~s~- 356 (985)
++++ ++++|++|+++| ++|...|+++|.++|+++|+.+|-|+ .+++|.. ...|.+| |+.++|.
T Consensus 97 ~~~~id~~~~~~~i~~~t~ai~~~h--~~G~~~d~~~i~~~~~~~~i~lIeD~-a~a~g~~~~g~~~G~~g-d~~~fSf~ 172 (363)
T PF01041_consen 97 ETLNIDPEALEKAITPKTKAILVVH--LFGNPADMDAIRAIARKHGIPLIEDA-AQAFGARYKGRPVGSFG-DIAIFSFH 172 (363)
T ss_dssp TTSSB-HHHHHHHHHTTEEEEEEE---GGGB---HHHHHHHHHHTT-EEEEE--TTTTT-EETTEETTSSS-SEEEEESS
T ss_pred CcCCcCHHHHHHHhccCccEEEEec--CCCCcccHHHHHHHHHHcCCcEEEcc-ccccCceeCCEeccCCC-CceEecCC
Confidence 4666 789999999988 89999999999999999999998854 4566642 2346677 9999996
Q ss_pred --ccccccCCCCCCcEEEEEEch-hhHhcCC-CceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHH
Q 001989 357 --QRFGVPMGYGGPHAAFLATSQ-EYKRMMP-GRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAA 432 (985)
Q Consensus 357 --k~lg~P~~~GGP~~G~l~~~~-~~~~~lp-~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa 432 (985)
|.+. .| ..|++.+++ ++.+++. -+-.|...+ ..++......+..+.-+..+.|+
T Consensus 173 ~~K~i~----~g--eGG~v~~~~~~~~~~~~~~~~~g~~~~----------------~~~~~~~~~~~g~n~rm~~~~AA 230 (363)
T PF01041_consen 173 PTKIIT----TG--EGGAVVTNDPELAERARALRNHGRSRD----------------AFRRYRHELPPGYNFRMSELQAA 230 (363)
T ss_dssp TTSSS-----SS--S-EEEEESTHHHHHHHHHHTBTTEETS----------------ECSTTEESSSS--B-B-BHHHHH
T ss_pred CCCCCc----CC--CCeeEEecHHHHHHHhhhhhccCcCcc----------------ccccccccccCCcccccHHHHHH
Confidence 4452 22 237888875 3333331 011121100 00000000001111112223344
Q ss_pred HHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCC-C-----CcceEEEecC-----CHHHHHHHHHHcCceeee
Q 001989 433 MYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGL-P-----FFDTVKVKCA-----DAHAIASAAYKIEMNLRV 501 (985)
Q Consensus 433 ~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~-~-----~~~~~~~~~~-----~~~~v~~~L~~~GI~~~~ 501 (985)
+-+..+ +-+++..++-.++++++.+.|.++.++..... + ....+.+..+ .-.++.+.|.++||..+.
T Consensus 231 igl~QL--~~L~~~~~~R~~~a~~y~~~L~~~~~~~~~~~~~~~~~~~~~~f~i~~~~~~~~~rd~l~~~L~~~GI~~~~ 308 (363)
T PF01041_consen 231 IGLAQL--KRLDEIIARRRENAQRYREALAGIPGIKPPPIPDGAERSSYYRFPIRLPDEALADRDELVEALRARGIETRP 308 (363)
T ss_dssp HHHHHH--HTHHHHHHHHHHHHHHHHHHHTTGTTEEEEGCGTTTEEBCESSEEEEETCCGCSTHHHHHHHHHHTTBEEBC
T ss_pred HHHHHH--HHhhhhHHHHHHHHHHHHHHHhcCCCcccccccccccccccccccccccccccchHHHHHHHHHHCCCcccc
Confidence 322222 34677777778999999999999855765421 1 1223555544 268899999999996421
Q ss_pred ec----------------------------CCeEEEEeccCCCHHHHHHHHHHHh
Q 001989 502 VD----------------------------SNTVTASFDETTTLEDVDKLFIVFA 528 (985)
Q Consensus 502 ~~----------------------------~~~lris~t~~~t~edId~li~aL~ 528 (985)
.. ...+.+-+++.-|.+|+++++++|+
T Consensus 309 ~~~~pl~~~~~~~~~~~~~~~~~P~ae~l~~r~l~LP~~~~lt~edv~~I~~~ir 363 (363)
T PF01041_consen 309 HYPKPLHRQPVYRSYPYYAPGDLPNAERLSQRLLSLPIHPRLTEEDVDYIAEAIR 363 (363)
T ss_dssp STSSCGGGSGGGTTGEEEETSSSHHHHHHHHHEEEEEHSTTSCHHHHHHHHHHHH
T ss_pred cccCchhhhHHHHhcCccccCCCHHHHHHHhCeEECcCCCCCCHHHHHHHhhccC
Confidence 00 1347788888899999999999874
|
The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A .... |
| >PRK07505 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.1e-11 Score=141.90 Aligned_cols=318 Identities=15% Similarity=0.158 Sum_probs=176.5
Q ss_pred CCccceecCCCCCC-CCCcHHHHHHHHhCCc-cccccCCChhhHhhhHHHHHHHHHHHHHHhcCCCCcceeeccchHHHH
Q 001989 164 NKVYKSFIGMGYYN-THVPPVILRNIMENPA-WYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAA 241 (985)
Q Consensus 164 n~~~~~~lG~g~y~-~~~p~~v~~~i~~~~~-~~t~~~pyq~e~sqg~l~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ 241 (985)
++.|.+|.+.++.+ |.-|.++. ++.+.-. +. ..+++.+.. ....+...++++.+++++|. ...++.+|+.+.
T Consensus 45 g~~~ld~~s~~~lgl~~~p~v~~-A~~~~l~~~g-~~~~~~~~~-~~~~~~~~~l~~~la~~~~~---~~~~~~sG~~a~ 118 (402)
T PRK07505 45 GHTFVNFVSCSYLGLDTHPAIIE-GAVDALKRTG-SLHLSSSRT-RVRSQILKDLEEALSELFGA---SVLTFTSCSAAH 118 (402)
T ss_pred CceEEEeecCCccCCCCCHHHHH-HHHHHHHHhC-CCCCCccch-hhhhHHHHHHHHHHHHHhCC---CEEEECChHHHH
Confidence 34466666665555 55565553 4443211 10 001221111 12356778899999999997 345555666666
Q ss_pred HHHH-HHhh-h-hcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc---hhhhc-cCCCEeEEEEEcC-CCCeeec
Q 001989 242 EAMA-MCNN-I-QKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL---KDIDY-KSGDVCGVLVQYP-GTEGEVL 313 (985)
Q Consensus 242 ea~~-~a~~-~-~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~---~~l~~-l~~~t~~V~v~~p-n~~G~v~ 313 (985)
++++ ++.. . ..++++.|+.+...|+++..... ..+ .+.+++.++. +++++ ++++++++++.+| |.+|.+.
T Consensus 119 ~~ai~~~~~~~~~~~~~~vi~~~~~~H~s~~~~~~-~~~-~~~~v~~~~~~d~~~l~~~~~~~~~~~vl~~p~~~~G~~~ 196 (402)
T PRK07505 119 LGILPLLASGHLTGGVPPHMVFDKNAHASLNILKG-ICA-DETEVETIDHNDLDALEDICKTNKTVAYVADGVYSMGGIA 196 (402)
T ss_pred HHHHHHHHhcccCCCCCCEEEEchhhhHhHHhhhh-hhh-cCCeEEEeCCCCHHHHHHHHhcCCCEEEEEecccccCCcC
Confidence 6554 3322 1 11233445666789998643221 122 2456666654 55666 6667778888887 6789999
Q ss_pred cHHHHHHHHHhCCcEEEEEecCccccCCCCC------Ccccc---e--EEEecC-ccccccCCCCCCcEEEEEE-chhhH
Q 001989 314 DYGDFIKNAHANGVKVVMATDLLALTILKPP------GELGA---D--IVVGSA-QRFGVPMGYGGPHAAFLAT-SQEYK 380 (985)
Q Consensus 314 di~~I~~~a~~~galliV~a~~~~lg~l~~~------~~~Ga---D--i~v~s~-k~lg~P~~~GGP~~G~l~~-~~~~~ 380 (985)
|+++|.++|+++|+++++| +.++++.+.+. ..+|. | +++.+. |.|+++ | |++.+ ++++.
T Consensus 197 ~~~~i~~l~~~~~~~li~D-Ea~~~~~~g~~g~~~~~~~~~~~~~d~~i~~~s~sK~~~~~------G-g~~~~~~~~~~ 268 (402)
T PRK07505 197 PVKELLRLQEKYGLFLYID-DAHGLSIYGKNGEGYVRSELDYRLNERTIIAASLGKAFGAS------G-GVIMLGDAEQI 268 (402)
T ss_pred CHHHHHHHHHHcCCEEEEE-CcccccCcCCCCCchHHHHcCCCCCCCeEEEEechhhhhcc------C-eEEEeCCHHHH
Confidence 9999999999999999994 34433222111 12332 4 555565 877532 2 56654 55555
Q ss_pred hcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHH
Q 001989 381 RMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALG 460 (985)
Q Consensus 381 ~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~ 460 (985)
+.+... ...+.+ .+ ++++ .+..+..+++ ..+..+.+.++.++..++..++...
T Consensus 269 ~~~~~~----------~~~~t~------------~~--~~~~-~a~aa~~a~l--~~~~~~~~~~~~~~l~~~~~~~~~~ 321 (402)
T PRK07505 269 ELILRY----------AGPLAF------------SQ--SLNV-AALGAILASA--EIHLSEELDQLQQKLQNNIALFDSL 321 (402)
T ss_pred HHHHHh----------CCCcee------------CC--CCCH-HHHHHHHHHH--HHHhccCcHHHHHHHHHHHHHHHHH
Confidence 544100 000100 01 1110 1222222222 3445556666666655555554433
Q ss_pred HhcCCCeEEcCCCCcceEEEecCC---HHHHHHHHHHcCceeeeec-------CCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 461 LKKLGTVEVQGLPFFDTVKVKCAD---AHAIASAAYKIEMNLRVVD-------SNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 461 L~~~g~~~~~~~~~~~~~~~~~~~---~~~v~~~L~~~GI~~~~~~-------~~~lris~t~~~t~edId~li~aL~~ 529 (985)
+... ....++....+..+. +.++.++|.++||.++... .+.+|++++..+|+||+|+++++|..
T Consensus 322 ~~~~-----~~g~~~~i~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~p~~~~~~~~lRi~~~~~~t~eei~~~~~~l~~ 395 (402)
T PRK07505 322 IPTE-----QSGSFLPIRLIYIGDEDTAIKAAKQLLDRGFYTSPVFFPVVAKGRAGLRIMFRASHTNDEIKRLCSLLKE 395 (402)
T ss_pred HHhc-----CCCCCCCEEEEEeCCHHHHHHHHHHHHHCCCeEeeecCCCCCCCCceEEEecCccCCHHHHHHHHHHHHH
Confidence 2211 011222222222222 6789999999999886531 25899999999999999999999974
|
|
| >PRK00854 rocD ornithine--oxo-acid transaminase; Reviewed | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.2e-11 Score=144.08 Aligned_cols=277 Identities=17% Similarity=0.166 Sum_probs=173.0
Q ss_pred HHHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhh-hh--c-C---CCCEEE-EcCCCChhHHHHHHHh-------
Q 001989 211 ESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNN-IQ--K-G---KKKTFI-IASNCHPQTIDICITR------- 275 (985)
Q Consensus 211 ~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~-~~--~-~---~g~~Vl-v~~~~H~s~~~~~~~~------- 275 (985)
+...++++.+++++|.+ .+.++++||.+.|+++.+.+ +. + + .+++|| .+...|.+....+..-
T Consensus 83 ~~~~~l~~~l~~~~~~~--~~~~~~SGs~A~e~al~~a~~~~~~~~g~~~~~~~vi~~~~~~HG~~~~~~~~~~~~~~~~ 160 (401)
T PRK00854 83 DQLAPLYEELAALTGSH--KVLPMNSGAEAVETAIKAVRKWGYEVKGVPEGQAEIIVCADNFHGRTLSIVGFSTDPDARG 160 (401)
T ss_pred HHHHHHHHHHHhhCCCC--EEEEeCCcHHHHHHHHHHHHHHHHhccCCCCCCceEEEECCCcCCccHHHHhccCCccccc
Confidence 45567889999999875 47888999999998885432 21 0 1 235665 4556777665544200
Q ss_pred -hcCCCeEEEEe---Cchhhhc-cCCCEeEEEEEcC-CCCeeecc----HHHHHHHHHhCCcEEEEEecCcc-ccCCCC-
Q 001989 276 -ADGFDIKVVVS---DLKDIDY-KSGDVCGVLVQYP-GTEGEVLD----YGDFIKNAHANGVKVVMATDLLA-LTILKP- 343 (985)
Q Consensus 276 -a~~~gi~v~~v---~~~~l~~-l~~~t~~V~v~~p-n~~G~v~d----i~~I~~~a~~~galliV~a~~~~-lg~l~~- 343 (985)
.......+..+ |++++++ +.+++++|++.+| |..|.+.| +++|.++|+++|+++++| +..+ +|....
T Consensus 161 ~~~~~~~~~~~~~~~d~~~le~~i~~~~~aii~e~~~~~~G~~~~~~~~l~~l~~l~~~~gi~lI~D-Ev~~g~g~~g~~ 239 (401)
T PRK00854 161 GFGPFTPGFRVVPFGDAEALEAAITPNTVAFLVEPIQGEAGVIIPPAGYFTRVRELCTANNVTLILD-EIQTGLGRTGKL 239 (401)
T ss_pred cCCCCCCCeEEeCCCCHHHHHHHhCCCeEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEe-chhhCCCCCchH
Confidence 00111233343 4567777 7788999999887 78999886 999999999999999994 2333 432210
Q ss_pred ----CCcccceEEEecCccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCC
Q 001989 344 ----PGELGADIVVGSAQRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSN 419 (985)
Q Consensus 344 ----~~~~GaDi~v~s~k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsn 419 (985)
......|+++. +|+|++ |.-.+|++.+++++++.+... .. + ..
T Consensus 240 ~~~~~~g~~~D~~~~-~K~l~g----g~~~ig~v~~~~~~~~~l~~~----------~~-----------------~-~t 286 (401)
T PRK00854 240 LAEEHEGIEADVTLI-GKALSG----GFYPVSAVLSNSEVLGVLKPG----------QH-----------------G-ST 286 (401)
T ss_pred hHHhhcCCCCCEEEe-cccccC----CccCeEEEEEcHHHHhcccCC----------CC-----------------C-CC
Confidence 11234688876 488852 221257788888877655210 00 0 01
Q ss_pred ccchh-HHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcC--CC--CcceEEEecCC--HHHHHHHH
Q 001989 420 ICTAQ-ALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQG--LP--FFDTVKVKCAD--AHAIASAA 492 (985)
Q Consensus 420 i~t~~-~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~--~~--~~~~~~~~~~~--~~~v~~~L 492 (985)
+|.+. ...+..+++ ..+..+ .+.++..++.+++.+.|++++ ..... .+ .+-.+.+..+. ..++.+.|
T Consensus 287 ~~~~~~~~aa~~a~L--~~l~~~---~~~~~~~~~~~~l~~~L~~~~-~~~~~~~~g~g~~~~i~~~~~~~~~~~~~~~L 360 (401)
T PRK00854 287 FGGNPLACAVARAAL--KVLTEE---GMIENAAEMGAYFLEGLRSIR-SNIVREVRGRGLMLAVELEPEAGGARQYCEAL 360 (401)
T ss_pred CCcCHHHHHHHHHHH--HHHHHc---CHHHHHHHHHHHHHHHHHhhc-cCceEEEeccceEEEEEEecCchhHHHHHHHH
Confidence 11111 222222222 333222 255677788899999998875 32221 11 11122232222 67899999
Q ss_pred HHcCceeeeecCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 493 YKIEMNLRVVDSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 493 ~~~GI~~~~~~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
.++||.+.....+.+|++++..+|++|||++++.|..
T Consensus 361 ~~~GV~v~~~~~~~lR~~p~~~~t~e~i~~~i~~l~~ 397 (401)
T PRK00854 361 KERGLLAKDTHDHTIRLAPPLVITREQVDWALEQIAK 397 (401)
T ss_pred HHCCeEEecCCCCEEEEeCCcccCHHHHHHHHHHHHH
Confidence 9999998754457999999999999999999999863
|
|
| >PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue | Back alignment and domain information |
|---|
Probab=99.47 E-value=5.3e-12 Score=144.76 Aligned_cols=269 Identities=17% Similarity=0.228 Sum_probs=173.1
Q ss_pred HHHHHHHHhcC------CCCc-ceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeC
Q 001989 215 NFQTMIADLTG------LPMS-NASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSD 287 (985)
Q Consensus 215 e~q~~ia~L~g------~~~~-~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~ 287 (985)
++++.+|++++ .+.. ++.+..|+.+++..+...++. +++++|++++-.|+.+...++. .|++++.++
T Consensus 48 ~lr~~ia~~~~~~~~~~~~~~~~i~~~~G~~~~~~~~~~~~~~--~~~~~vlv~~P~y~~~~~~~~~----~g~~~~~~~ 121 (363)
T PF00155_consen 48 ELREAIADFLGRRYGVPVDPEANILVTSGAQAALFLLLRLLKI--NPGDTVLVPDPCYPSYIEAARL----LGAEVIPVP 121 (363)
T ss_dssp HHHHHHHHHHHHHHTHHTTGGEGEEEESHHHHHHHHHHHHHHS--STTSEEEEEESSSTHHHHHHHH----TTSEEEEEE
T ss_pred HHHHHHHHHhhhccCcccccceEEEEecccccchhhhhhcccc--cccccceecCCccccccccccc----cCceeeecc
Confidence 46678888888 6666 777777777666555544422 3789999999999999998864 466666665
Q ss_pred ----------chhhhc-cCC------CEeEEEEEcC-CCCeeecc---HHHHHHHHHhCCcEEEEEecCccccCCCCC--
Q 001989 288 ----------LKDIDY-KSG------DVCGVLVQYP-GTEGEVLD---YGDFIKNAHANGVKVVMATDLLALTILKPP-- 344 (985)
Q Consensus 288 ----------~~~l~~-l~~------~t~~V~v~~p-n~~G~v~d---i~~I~~~a~~~galliV~a~~~~lg~l~~~-- 344 (985)
+++|++ +++ ++++|++.+| |++|.+.+ +.+|+++|+++|+++++|. ..+......+
T Consensus 122 ~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~~~~p~nPtG~~~~~~~l~~l~~~~~~~~~~ii~De-~y~~~~~~~~~~ 200 (363)
T PF00155_consen 122 LDSENDFHLDPEALEEALDELPSKGPRPKAVLICNPNNPTGSVLSLEELRELAELAREYNIIIIVDE-AYSDLIFGDPDF 200 (363)
T ss_dssp EEETTTTEETHHHHHHHHHTSHTTTETEEEEEEESSBTTTTBB--HHHHHHHHHHHHHTTSEEEEEE-TTTTGBSSSSHT
T ss_pred ccccccccccccccccccccccccccccceeeecccccccccccccccccchhhhhcccccceeeee-ceeccccCCCcc
Confidence 345555 443 5788899998 78998764 5666666999999999953 3332222211
Q ss_pred ------Ccccce-EEEecC-ccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeeccccccccccccc
Q 001989 345 ------GELGAD-IVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKA 416 (985)
Q Consensus 345 ------~~~GaD-i~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~a 416 (985)
.+.+.+ |++.|. |.||.| |--+|++.+++++.+.+.. . .
T Consensus 201 ~~~~~~~~~~~~vi~~~S~SK~~g~~----GlRvG~i~~~~~~~~~l~~----------------------------~-~ 247 (363)
T PF00155_consen 201 GPIRSLLDEDDNVIVVGSLSKSFGLP----GLRVGYIVAPPELIERLRR----------------------------F-Q 247 (363)
T ss_dssp HHHHGHHTTTSTEEEEEESTTTTTSG----GGTEEEEEEEHHHHHHHHH----------------------------H-H
T ss_pred Ccccccccccccceeeeecccccccc----ccccccccchhhhhhhhhh----------------------------c-c
Confidence 012233 777776 877643 1236899998877765510 0 0
Q ss_pred CCCccchhHHHHHHHHHHHHH-hCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCCCcceEEE-ecCC--HHHHHHHH
Q 001989 417 TSNICTAQALLANMAAMYAVY-HGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDTVKV-KCAD--AHAIASAA 492 (985)
Q Consensus 417 tsni~t~~~l~a~~aa~~l~~-~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~~~~~~~~-~~~~--~~~v~~~L 492 (985)
++..++ ......++.++... ...+-++++.++..++.+++.+.|++.| +.+..++ .+-+.+ ..+. ..++.+.|
T Consensus 248 ~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~~-~~~~~~~-~~~~~~~~~~~~~~~~l~~~L 324 (363)
T PF00155_consen 248 RSGLSS-SPMQAAAAAALSDPELVEKWLEELRERLRENRDLLREALEEIG-ITVLPPE-AGFFLWVRLDPNDAEELAQEL 324 (363)
T ss_dssp HHTTSS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SEEEHHS-BSSEEEEEESHHHHHHHHHHH
T ss_pred cccccc-chhhHHHHHhhhcccccccccccchhhHHHHHHHHHHHHHHhh-hheeecc-CccEEEEEcccchHHHHHHHH
Confidence 011111 22222222221111 0111457788888999999999999887 8876422 122222 2332 57899999
Q ss_pred HHc-Cceeeee----cCCeEEEEeccCCCHHHHHHHHHHH
Q 001989 493 YKI-EMNLRVV----DSNTVTASFDETTTLEDVDKLFIVF 527 (985)
Q Consensus 493 ~~~-GI~~~~~----~~~~lris~t~~~t~edId~li~aL 527 (985)
.++ ||.+... .++.+|+++ ...++|++++++++|
T Consensus 325 ~~~~gi~v~pg~~~~~~~~iRi~~-a~~~~e~~~~~~~~l 363 (363)
T PF00155_consen 325 LEEYGILVRPGSYFGVPGYIRISL-ASHSEEDLEEALERL 363 (363)
T ss_dssp HHHHTEEEEEGGGGTSTTEEEEEG-GCSCHHHHHHHHHHH
T ss_pred HHhCCEEEEecCCCCCCCEEEEEe-ccCCHHHHHHHHhhC
Confidence 988 9987542 267899999 889999999999876
|
On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A .... |
| >PRK06108 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.1e-11 Score=140.91 Aligned_cols=277 Identities=16% Similarity=0.160 Sum_probs=174.9
Q ss_pred hHHHHHHHHHHHHHHhcC--CCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEE
Q 001989 208 GRLESLLNFQTMIADLTG--LPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVV 285 (985)
Q Consensus 208 g~l~~i~e~q~~ia~L~g--~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~ 285 (985)
|..+....+.+.+.+.+| .++.++.++.|++.++..++.++ .++||+|++++-.|+.+...++ ..|++++.
T Consensus 62 G~~~lr~~la~~~~~~~~~~~~~~~i~~t~g~~~al~~~~~~l---~~~gd~vl~~~p~y~~~~~~~~----~~g~~~~~ 134 (382)
T PRK06108 62 GIPELREALARYVSRLHGVATPPERIAVTSSGVQALMLAAQAL---VGPGDEVVAVTPLWPNLVAAPK----ILGARVVC 134 (382)
T ss_pred CCHHHHHHHHHHHHHHhCCCcCcceEEEeCChHHHHHHHHHHh---cCCCCEEEEeCCCccchHHHHH----HCCCEEEE
Confidence 433333344455555667 66778989999987766555443 1378999999999998877664 45788777
Q ss_pred eCc-----------hhhhc-cCCCEeEEEEEcC-CCCeeec---cHHHHHHHHHhCCcEEEEEecCccccCCC----CC-
Q 001989 286 SDL-----------KDIDY-KSGDVCGVLVQYP-GTEGEVL---DYGDFIKNAHANGVKVVMATDLLALTILK----PP- 344 (985)
Q Consensus 286 v~~-----------~~l~~-l~~~t~~V~v~~p-n~~G~v~---di~~I~~~a~~~galliV~a~~~~lg~l~----~~- 344 (985)
++. +++++ +++++++|++++| |.+|.+. ++++|+++|+++|+++++|. ..+..... .+
T Consensus 135 v~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~p~NPtG~~~~~~~~~~l~~~~~~~~~~li~De-~y~~~~~~~~~~~~~ 213 (382)
T PRK06108 135 VPLDFGGGGWTLDLDRLLAAITPRTRALFINSPNNPTGWTASRDDLRAILAHCRRHGLWIVADE-VYERLYYAPGGRAPS 213 (382)
T ss_pred eeCCCCCCCccCCHHHHHHhcCccceEEEEECCCCCCCcccCHHHHHHHHHHHHHCCcEEEEeh-hhhhhccCCCCCCCC
Confidence 654 23444 6678899999988 7899775 57889999999999999942 21111110 00
Q ss_pred -----CcccceEEEecC-ccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCC
Q 001989 345 -----GELGADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATS 418 (985)
Q Consensus 345 -----~~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~ats 418 (985)
....-.++++|. |.|+.| |-.+|++++++++++.+.... .. .
T Consensus 214 ~~~~~~~~~~~i~~~S~SK~~g~~----G~RiG~~~~~~~~~~~~~~~~--------------------------~~--~ 261 (382)
T PRK06108 214 FLDIAEPDDRIIFVNSFSKNWAMT----GWRLGWLVAPPALGQVLEKLI--------------------------EY--N 261 (382)
T ss_pred HhhcCCCcCCEEEEeechhhccCc----ccceeeeeCCHHHHHHHHHHH--------------------------Hh--c
Confidence 111235778886 877532 334799999888776551000 00 0
Q ss_pred CccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCCCcceEEEecCC---HHHHHHHHH-H
Q 001989 419 NICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDTVKVKCAD---AHAIASAAY-K 494 (985)
Q Consensus 419 ni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~---~~~v~~~L~-~ 494 (985)
..+.+.. ...++..+...+.+-++++.++..++.+++.+.|+++.++++..+....-+.++.+. ..++.++|. +
T Consensus 262 ~~~~~~~--~q~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~p~~g~~~~~~l~~~~~~~~~~~~ll~~ 339 (382)
T PRK06108 262 TSCVAQF--VQRAAVAALDEGEDFVAELVARLRRSRDHLVDALRALPGVEVAKPDGAMYAFFRIPGVTDSLALAKRLVDE 339 (382)
T ss_pred ccCCChH--HHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCCeeEEEEEeCCCCCCHHHHHHHHHHh
Confidence 1111111 112222111223344678888888999999999988733776532111112344442 678888875 5
Q ss_pred cCceeeee------cCCeEEEEeccCCCHHHHHHHHHHHh
Q 001989 495 IEMNLRVV------DSNTVTASFDETTTLEDVDKLFIVFA 528 (985)
Q Consensus 495 ~GI~~~~~------~~~~lris~t~~~t~edId~li~aL~ 528 (985)
+||.+... ..+.+|+|++. +.++++..++.|.
T Consensus 340 ~gV~v~pg~~f~~~~~~~~Ris~~~--~~~~l~~~l~~l~ 377 (382)
T PRK06108 340 AGLGLAPGTAFGPGGEGFLRWCFAR--DPARLDEAVERLR 377 (382)
T ss_pred CCEEEeCchhhCCCCCCEEEEEecC--CHHHHHHHHHHHH
Confidence 79987431 14789999997 8899998888776
|
|
| >TIGR03801 asp_4_decarbox aspartate 4-decarboxylase | Back alignment and domain information |
|---|
Probab=99.47 E-value=4.2e-12 Score=149.67 Aligned_cols=327 Identities=14% Similarity=0.085 Sum_probs=175.5
Q ss_pred hhHHHHHHHHH-HHHHHHhCC---Ccc--ceec-CcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHC
Q 001989 628 QGYQEMFNNLG-EWLCTITGF---DSF--SLQP-NAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMC 700 (985)
Q Consensus 628 ~G~~~~~~e~~-~~la~l~G~---~~~--~~~~-~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~ 700 (985)
+|.....+++. .++.+.++. +.. .++. +++++|+..++.++..- .. ..+||+|+++.+.+..+...+++.
T Consensus 128 ~g~~~~~e~iv~~y~~~~~~~~~~~~~~~~V~it~Gat~al~~~~~~l~~~--~l-l~pGD~Vlv~~P~y~~y~~~~~l~ 204 (521)
T TIGR03801 128 DRMLPHSEKIVHQYLIQEMCGNKPPPGEFDLFAVEGGTAAMCYIFDSLKAN--EL-LKKGDKIALMTPIFTPYLEIPELP 204 (521)
T ss_pred CCCHHHHHHHHHHHHHhhccCCCCCCCcCeEEEeCCHHHHHHHHHHHHhHh--hc-CCCCCEEEEeCCCcHHHHHHHHHh
Confidence 34445555544 344444332 222 4444 44555654443332110 00 147899999998666666655554
Q ss_pred --CcEEEEEcCCC--C-----CCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccc--cCHHHHHHHHHHc--CCEEEEE
Q 001989 701 --GMKIVSVGTDA--K-----GNINIEELRKAAEANRDNLSTLMVTYP-STHGVYE--EGIDEICKIIHDN--GGQVYMD 766 (985)
Q Consensus 701 --G~~vv~v~~d~--~-----g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~--~di~eI~~la~~~--galliVD 766 (985)
|++++.++.++ + +.+|+++|+++++ +++++|++++| |++|.+. ..+++|+++|+++ +++++.|
T Consensus 205 ~~g~~vv~i~~~~~~~~g~~~~~~d~~~l~~~~~---~~~kai~l~nP~NPTG~vls~e~l~~I~~ia~~~~~~l~II~D 281 (521)
T TIGR03801 205 RYDFEVVRIKADEMTEDGTHTWQYPDKELEKLRD---PSIKALFVVNPSNPPSVAMSDESIEKIVDIVANDRPDLMILTD 281 (521)
T ss_pred cCCcEEEEeecccccccccccCCCCHHHHHHhcC---CCCcEEEEeCCCCCCCCCCCHHHHHHHHHHHHhcCCCeEEEEC
Confidence 77888887753 1 6789999998876 78999999999 5799986 2478888899986 9999999
Q ss_pred ccccccccCCCCCCccCC--cEEEeCCcccccccCCCCCCceEEEEEccc-----ccCcCCCCcc--------ccCCCC-
Q 001989 767 GANMNAQVGLTSPGYIGA--DVCHLNLHKTFCIPHGGGGPGMGPIGVKKH-----LAPFLPSHPV--------VSTGGI- 830 (985)
Q Consensus 767 ~a~~~~~~~l~~pg~~g~--Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~-----l~~~lp~~~~--------g~~~~~- 830 (985)
.++..-...+........ -+++.|+.|+|++| |+++|++++.++ ++..+|.... ..+.+.
T Consensus 282 EvY~~f~~~~~sl~~~~~~~vI~v~SfSK~fg~~----G~RlG~i~~~~~~v~d~li~~lp~~~~~~l~~ry~~~~~~p~ 357 (521)
T TIGR03801 282 DVYGTFVDDFRSLFAELPYNTIGVYSFSKYFGAT----GWRLGTIALHKDNIFDKLIAELPEEKKKELDKRYSSLTTEPR 357 (521)
T ss_pred CCchhhcccccchhhhCCCCEEEEEcchhhccCc----hhhhhhhhcCchHHHHHHHHhccHHHHHHHhhhhccccCChh
Confidence 987411111111111111 36778889998664 899999998754 3332321100 000000
Q ss_pred -CCC--------C--CCCCCCCCCCcchhhhHHHH-HHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhccCCeeecCCC
Q 001989 831 -PAP--------E--KSQPLGTIAAAPWGSALILP-ISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVN 898 (985)
Q Consensus 831 -~~~--------~--~~~~~~~i~s~~~g~~~~~~-~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~g~~l~~~~~~ 898 (985)
.++ + ....+.+.++ ..+.-.++ ++.+.+. .+.+-..+..+...++.+.+.+.| ++.+....+.
T Consensus 358 ~~~fidr~vadsr~v~~~~~~g~s~--p~Q~q~al~a~~all~-~~~~y~~~~~~~~~~R~~~l~~~L--g~~~~~~~~~ 432 (521)
T TIGR03801 358 KLKFIDRLVADSRQVALNHTAGLST--PQQVQMALFSLFALMD-KENAYKAETKDICRRREKLLFRGL--GLPLQEDPND 432 (521)
T ss_pred hhhhHHHHHHHHHHHHHhccCCCCc--HHHHHHHHHHHHHHhc-cchhHHHHHHHHHHHHHHHHHHhc--CCCCcCCCCC
Confidence 000 0 0011222221 11211111 1112222 123333344445566667777777 3332211222
Q ss_pred CceeeEEEEEecCcccc-----------CCCCHHHHHHHHHHC-CCcc-CCCCCC-CCCEEEEeccCCCCHHHHHHHHcc
Q 001989 899 GTVAHEFIVDLRGLKNT-----------AGIEPEDVAKRLMDY-GFHG-PTMSWP-VPGTLMIEPTESESKSWTGIVMLS 964 (985)
Q Consensus 899 ~~~~~~~iv~~~~~~~~-----------~g~~~~~v~~~L~~~-Gi~~-~~~~~p-~~~~lris~t~~~t~eeId~~~~~ 964 (985)
+.++ +.++++.+... ...+..+++.+|.++ |+.+ ++..|. ..+.+|||+.. .+++++.+ ..
T Consensus 433 g~~Y--~~~di~~~~~~~~~~~f~~~l~~~~~~~~~~~~L~~e~gV~v~PG~~Fg~~~~~vRisla~-l~~~~~~~--~~ 507 (521)
T TIGR03801 433 VAYY--TLIDLEEWAEKNYGEEFSSYLKKNYSPVDVLFRLAEETGIVLLPGGGFGGPEWSVRVSLAN-LNEYDYAE--IG 507 (521)
T ss_pred eEEE--EEeehHHHHHHhcchHHHHHHhccCCHHHHHHHHHHhCCEEEeCchhcCCCCCeEEEEecC-CCHHHHHH--HH
Confidence 3333 33455421100 012467888888765 8874 333332 24689999843 46677777 55
Q ss_pred CChhHHHHhh
Q 001989 965 SPSEKKLHRL 974 (985)
Q Consensus 965 ~~l~~~~~~~ 974 (985)
+.|++++.+.
T Consensus 508 ~rl~~~~~~~ 517 (521)
T TIGR03801 508 RAIRKILDEY 517 (521)
T ss_pred HHHHHHHHHH
Confidence 6666666543
|
This enzyme, aspartate 4-decarboxylase (EC 4.1.1.12), removes the side-chain carboxylate from L-aspartate, converting it to L-alanine plus carbon dioxide. It is a PLP-dependent enzyme, homologous to aspartate aminotransferase (EC 2.6.1.1). |
| >PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal) | Back alignment and domain information |
|---|
Probab=99.47 E-value=5.7e-12 Score=144.04 Aligned_cols=210 Identities=20% Similarity=0.189 Sum_probs=141.2
Q ss_pred HHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHH----HHHCCcEEEEEcC
Q 001989 634 FNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPAT----AAMCGMKIVSVGT 709 (985)
Q Consensus 634 ~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~----a~~~G~~vv~v~~ 709 (985)
...+++.++++.|.+.+. .++||..|+.++++++. +++++||+++..++..... ....|+++.+++.
T Consensus 57 ~~~le~~la~Le~g~~a~-~~~SGmaAi~~~l~~ll--------~~Gd~iv~~~~~Y~~t~~~~~~~l~~~gv~v~~~d~ 127 (386)
T PF01053_consen 57 VRALEQRLAALEGGEDAL-LFSSGMAAISAALLALL--------KPGDHIVASDDLYGGTYRLLEELLPRFGVEVTFVDP 127 (386)
T ss_dssp HHHHHHHHHHHHT-SEEE-EESSHHHHHHHHHHHHS---------TTBEEEEESSSSHHHHHHHHHCHHHTTSEEEEEST
T ss_pred HHHHHHHHHHhhccccee-eccchHHHHHHHHHhhc--------ccCCceEecCCccCcchhhhhhhhcccCcEEEEeCc
Confidence 457889999999987654 45678777755555442 3678899877644433222 3468999999986
Q ss_pred CCCCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccCHHHHHHHHHHcC-CEEEEEccccccccCCCCCCccCCcEE
Q 001989 710 DAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDNG-GQVYMDGANMNAQVGLTSPGYIGADVC 787 (985)
Q Consensus 710 d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~g-alliVD~a~~~~~~~l~~pg~~g~Di~ 787 (985)
. |+++|+++++ ++|++|+++.| |++.-+. ||++|+++||++| ++++||.+- +-..+.+|-.+|+|++
T Consensus 128 ~-----d~~~l~~~l~---~~t~~v~~EspsNP~l~v~-Dl~~i~~~a~~~g~~~~vVDnT~--atp~~~~pL~~GaDiv 196 (386)
T PF01053_consen 128 T-----DLEALEAALR---PNTKLVFLESPSNPTLEVP-DLEAIAKLAKEHGDILVVVDNTF--ATPYNQNPLELGADIV 196 (386)
T ss_dssp T-----SHHHHHHHHC---TTEEEEEEESSBTTTTB----HHHHHHHHHHTTT-EEEEECTT--THTTTC-GGGGT-SEE
T ss_pred h-----hHHHHHhhcc---ccceEEEEEcCCCcccccc-cHHHHHHHHHHhCCceEEeeccc--cceeeeccCcCCceEE
Confidence 4 8999999998 89999999998 5666665 8999999999999 999999764 3334567889999999
Q ss_pred EeCCcccccccCCCCCC-ceEEEEEcc--cccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhc
Q 001989 788 HLNLHKTFCIPHGGGGP-GMGPIGVKK--HLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMG 864 (985)
Q Consensus 788 ~~s~hK~l~~p~g~GGP-g~G~i~~~~--~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg 864 (985)
+.|+.|+++ +.+- -+|.++++. ++.+.+.... +.++...+ ...||.. ..|
T Consensus 197 v~S~TKyl~----Ghsdv~~G~vv~~~~~~~~~~l~~~~-------------~~~G~~~~--------p~da~ll--~rg 249 (386)
T PF01053_consen 197 VHSATKYLS----GHSDVMGGAVVVNGSSELYDRLREFR-------------RLLGATLS--------PFDAWLL--LRG 249 (386)
T ss_dssp EEETTTTTT----TSSSE-EEEEEESSHHHHHHHHHHHH-------------HHHT-B----------HHHHHHH--HHH
T ss_pred Eeecccccc----CCcceeeEEEEECchhhhhhhhcchh-------------hhcCccch--------HHHHHHH--hcC
Confidence 999999984 1222 377887765 3433321000 01112211 1234443 345
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccC
Q 001989 865 SKGLTEASKIAILNANYMAKRLEKHY 890 (985)
Q Consensus 865 ~eGl~~~~~~~~~~a~~l~~~L~~g~ 890 (985)
-+.+..++++..+++..+++.|++..
T Consensus 250 l~Tl~~R~~~~~~nA~~lA~~L~~hp 275 (386)
T PF01053_consen 250 LRTLPLRMERQNENAEALAEFLEEHP 275 (386)
T ss_dssp HTTHHHHHHHHHHHHHHHHHHHHTST
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHhCC
Confidence 56677888899999999999998753
|
Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B .... |
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 985 | ||||
| 1wyt_B | 474 | Crystal Structure Of Glycine Decarboxylase (P-Prote | 6e-65 | ||
| 1wyt_A | 438 | Crystal Structure Of Glycine Decarboxylase (P-Prote | 1e-56 |
| >pdb|1WYT|B Chain B, Crystal Structure Of Glycine Decarboxylase (P-Protein) Of The Glycine Cleavage System, In Apo Form Length = 474 | Back alignment and structure |
|
| >pdb|1WYT|A Chain A, Crystal Structure Of Glycine Decarboxylase (P-Protein) Of The Glycine Cleavage System, In Apo Form Length = 438 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 985 | |||
| 1wyu_B | 474 | Glycine dehydrogenase subunit 2 (P-protein); alpha | 0.0 | |
| 1wyu_A | 438 | Glycine dehydrogenase (decarboxylating) subunit 1; | 0.0 | |
| 1wyu_A | 438 | Glycine dehydrogenase (decarboxylating) subunit 1; | 1e-09 | |
| 2z67_A | 456 | O-phosphoseryl-tRNA(SEC) selenium transferase; sel | 2e-09 | |
| 3mad_A | 514 | Sphingosine-1-phosphate lyase; carboxy-lyase activ | 3e-09 | |
| 2dgk_A | 452 | GAD-beta, GADB, glutamate decarboxylase beta; gadb | 2e-07 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 6e-07 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 3e-06 | |
| 3hbx_A | 502 | GAD 1, glutamate decarboxylase 1; calmodulin-bindi | 3e-05 | |
| 1ax4_A | 467 | Tryptophanase; tryptophan biosynthesis, tryptophan | 7e-05 | |
| 2e7j_A | 371 | SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-st | 2e-04 | |
| 2ez2_A | 456 | Beta-tyrosinase, tyrosine phenol-lyase; PLP-depend | 9e-04 |
| >1wyu_B Glycine dehydrogenase subunit 2 (P-protein); alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_B* 1wyv_B* Length = 474 | Back alignment and structure |
|---|
Score = 707 bits (1827), Expect = 0.0
Identities = 162/427 (37%), Positives = 248/427 (58%), Gaps = 25/427 (5%)
Query: 535 FTAASLAEEVETAIPSGLTRESPYLTHPVFNKYHTEHELLRYIHLLQSKELSLCHSMIPL 594
+ E IP RE P V E L+R+ L +++ + + PL
Sbjct: 17 LKLVKAVPKAEDLIPKEHLREVPPRLPEV-----DELTLVRHYTGLSRRQVGVDTTFYPL 71
Query: 595 GSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFDSFSLQP 654
GSCTMK N ++ FA++HP+ AQG + LGE+L +TG D+ +L+P
Sbjct: 72 GSCTMKYNP--KLHEEAARLFADLHPYQDPRTAQGALRLMWELGEYLKALTGMDAITLEP 129
Query: 655 NAGAAGEYAGLMVIRAYHKARGD-HHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKG 713
AGA GE G+++IRAYH+ RG+ R V ++P SAHG+NPATA+M G ++ + + +G
Sbjct: 130 AAGAHGELTGILIIRAYHEDRGEGRTRRVVLVPDSAHGSNPATASMAGYQVREIPSGPEG 189
Query: 714 NINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQ 773
+++E L++ +++ LM+T P+T G++E I EI ++ + G Q+Y DGAN+NA
Sbjct: 190 EVDLEALKRELG---PHVAALMLTNPNTLGLFERRILEISRLCKEAGVQLYYDGANLNAI 246
Query: 774 VGLTSPGYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGG--IP 831
+G PG +G DV HLNLHKTF +PHGGGGPG GP+GVK HLAP+LP V
Sbjct: 247 MGWARPGDMGFDVVHLNLHKTFTVPHGGGGPGSGPVGVKAHLAPYLPVPLVERGEEGFYL 306
Query: 832 APEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRL-EKHY 890
++ + +G + + +G+ L L ++ YI +G +GL +A+ +A+LNA Y+ + L EK Y
Sbjct: 307 DFDRPKSIGRV-RSFYGNFLALVRAWAYIRTLGLEGLKKAAALAVLNARYLKELLKEKGY 365
Query: 891 PILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWP--VPGTLMIE 948
+ + +G HEF+ + G D+AK L++ GFH PT+ +P V LM+E
Sbjct: 366 RVPY---DGPSMHEFV-----AQPPEGFRALDLAKGLLELGFHPPTVYFPLIVKEALMVE 417
Query: 949 PTESESK 955
PTE+E+K
Sbjct: 418 PTETEAK 424
|
| >1wyu_A Glycine dehydrogenase (decarboxylating) subunit 1; alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_A* 1wyv_A* Length = 438 | Back alignment and structure |
|---|
Score = 643 bits (1662), Expect = 0.0
Identities = 143/441 (32%), Positives = 218/441 (49%), Gaps = 19/441 (4%)
Query: 101 RHNSATPEDQAKMSELVGLDNLDSLIDATVPKSIRIDSMKFSKFDEGLTESQMIEHMQKL 160
+ T E+ +M VG +L+ L +PK I + E L E +++E +++L
Sbjct: 2 DYTPHTEEEIREMLRRVGAASLEDLFAH-LPKEILSPPIDL---PEPLPEWKVLEELRRL 57
Query: 161 ASMN-KVYKSFIGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTM 219
A+ N +K+F+G G + HVPPV+ + + + T YTPYQ E++QG L++ +QTM
Sbjct: 58 AAQNLPAHKAFLGGGVRSHHVPPVV-QALAARGEFLTAYTPYQPEVSQGVLQATFEYQTM 116
Query: 220 IADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGF 279
IA+L GL ++NAS+ D TA AE + + + +++ HP+ + +
Sbjct: 117 IAELAGLEIANASMYDGATALAEGVLLALRE--TGRMGVLVSQGVHPEYRAVLRAYLEAV 174
Query: 280 DIKVVVSDLK----DIDYKSGDVCGVLVQYPGTEGEVLDYGDFIKNAHANGVKVVMATDL 335
K++ L+ + +V V+VQ P G + D G F + AH G V D
Sbjct: 175 GAKLLTLPLEGGRTPLPEVGEEVGAVVVQNPNFLGALEDLGPFAEAAHGAGALFVAVADP 234
Query: 336 LALTILKPPGELGADIVVGSAQRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSS 395
L+L +LKPPG GADI VG Q G+PMG+GGPH FLAT + + R +PGR+V ++D
Sbjct: 235 LSLGVLKPPGAYGADIAVGDGQSLGLPMGFGGPHFGFLATKKAFVRQLPGRLVSETVDVE 294
Query: 396 GKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAG 455
G+ + +Q REQ+IRR KA SNI T L A M AMY GPEGL+ +A + +A
Sbjct: 295 GRRGFILTLQAREQYIRRAKAKSNITTNAQLTALMGAMYLAALGPEGLREVALKSVEMAH 354
Query: 456 TFALGLKKLGTVE-VQGLPFFDTVKVKC-ADAHAIASAAYKIEMN-----LRVVDSNTVT 508
L ++ V PFF+ + D A+ A + + R N
Sbjct: 355 KLHALLLEVPGVRPFTPKPFFNEFALALPKDPEAVRRALAERGFHGATPVPREYGENLAL 414
Query: 509 ASFDETTTLEDVDKLFIVFAG 529
+ E ED+ L
Sbjct: 415 FAATELHEEEDLLALREALKE 435
|
| >1wyu_A Glycine dehydrogenase (decarboxylating) subunit 1; alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_A* 1wyv_A* Length = 438 | Back alignment and structure |
|---|
Score = 60.7 bits (148), Expect = 1e-09
Identities = 72/372 (19%), Positives = 124/372 (33%), Gaps = 94/372 (25%)
Query: 627 AQG-------YQEMFNNLGEWLCTITGFD--SFSLQPNAGAAGEYAGLMVIRAYHKARGD 677
+QG YQ M + + G + + S+ A A E L+ +R +
Sbjct: 103 SQGVLQATFEYQTM-------IAELAGLEIANASMYDGATALAE-GVLLALRETGRMG-- 152
Query: 678 HHRNVCIIPVSAHGTNPATAAMC-------GMKIVSVGTDAKGNINIEELRKAAEANRDN 730
+ VS G +P A+ G K++++ + G + E+ +
Sbjct: 153 -------VLVSQ-GVHPEYRAVLRAYLEAVGAKLLTLPLEG-GRTPLPEVG-------EE 196
Query: 731 LSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIGADVCHLN 790
+ ++V P+ G E+ + + H G A+ + L PG GAD+ +
Sbjct: 197 VGAVVVQNPNFLGALED-LGPFAEAAHGAGALFVA-VADPLSLGVLKPPGAYGADIAVGD 254
Query: 791 LHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPV---VSTGGIPA-------------PE 834
+P G GGP G + KK LP V V G
Sbjct: 255 GQS-LGLPMGFGGPHFGFLATKKAFVRQLPGRLVSETVDVEGRRGFILTLQAREQYIRRA 313
Query: 835 K-------SQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLE 887
K + L + A Y+A +G +GL E + ++ A+ + L
Sbjct: 314 KAKSNITTNAQLTALMGA------------MYLAALGPEGLREVALKSVEMAHKLHALLL 361
Query: 888 K--HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPT-MSWPVP-G 943
+ +EF + L +PE V + L + GFHG T +
Sbjct: 362 EVPGVRPFT---PKPFFNEFALAL-------PKDPEAVRRALAERGFHGATPVPREYGEN 411
Query: 944 TLMIEPTESESK 955
+ TE +
Sbjct: 412 LALFAATELHEE 423
|
| >2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, PYR 5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis} SCOP: c.67.1.9 Length = 456 | Back alignment and structure |
|---|
Score = 60.1 bits (145), Expect = 2e-09
Identities = 50/320 (15%), Positives = 87/320 (27%), Gaps = 57/320 (17%)
Query: 632 EMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHG 691
F LG + I + + + + A AR + NV I P ++H
Sbjct: 141 SFFKQLGLNVHAIATP----------ISTGMSISLCLSA---ARKKYGSNVVIYPYASHK 187
Query: 692 TNPATAAMCGMKIVSV---GTDAKGNINIEELRKAAEANRDNLSTLMV--TYPST-HGVY 745
+ + GM + V + + +E++ A + + + V T
Sbjct: 188 SPIKAVSFVGMNMRLVETVLDGDRVYVPVEDIENAIKKEIELGNRPCVLSTLTFFPPRNS 247
Query: 746 EEGIDEICKIIHDNGGQVYMDGA---NMNAQVGLTSPGYIG-ADVCHLNLHKTFCIPHGG 801
++ I EI KI + ++GA N + + D + K P GG
Sbjct: 248 DD-IVEIAKICENYDIPHIINGAYAIQNNYYLEKLKKAFKYRVDAVVSSSDKNLLTPIGG 306
Query: 802 GGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIA 861
G K ++ P G T S L
Sbjct: 307 GLVYSTDAEFIKEISLSYP-------GRAS--------ATPVVNTLVSLLS--------- 342
Query: 862 MMGSKGLTEASKIAILNANYMAKRLEKH-----YPILFRGVNGTVAHEF---IVDLRGLK 913
MGSK E K + + + L L V++
Sbjct: 343 -MGSKNYLELVKNQKNSKKLLDELLNDLSKKTGGKFLDVESPIASCISVNSDPVEIAAKL 401
Query: 914 NTAGIEPEDVAKRLMDYGFH 933
+ K+ +G
Sbjct: 402 YNLRVTGPRGIKKTDHFGNC 421
|
| >3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A* Length = 514 | Back alignment and structure |
|---|
Score = 59.5 bits (144), Expect = 3e-09
Identities = 70/452 (15%), Positives = 143/452 (31%), Gaps = 58/452 (12%)
Query: 512 DETTTLEDVDKLFIVFAGGKSVPFTAASLAEEVETAIPSGLTRESPYLTHPVFNKYHTEH 571
+ ++L+D ++ + + + + + I R + P
Sbjct: 22 EFPSSLQDYCEIRGIQSQPPARRDPTMDWLASLRSQIKPYRDRFPSHARLP--RAGLPRA 79
Query: 572 ELLRYIHLLQSKELSLCHSMIPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQ 631
E+L I + + E G+ + + + +P P D
Sbjct: 80 EILAEIAAMGAAESPAWRDGYASGAVYHGDEHHIAFLNEVYALQSQSNPLHP-DLWPSTA 138
Query: 632 EMFNNLGEWLCTITGFDSFSLQPNAGAA---GEYAGLMVIRAY----HKARGDHHRNVCI 684
+ + + G D+ G G + L+ ++ Y +G +
Sbjct: 139 KFEAEVVAMTAHMLGGDAAGGTV-CGTVTSGGTESLLLAMKTYRDWARATKGITAPEA-V 196
Query: 685 IPVSAHGTNPATAAMCGMKIVSVGTDAKGNINIEELRKAAEANRDNLSTLMV--TYPST- 741
+PVSAH A G+K+V DA ++ +R+A N T++V + P
Sbjct: 197 VPVSAHAAFDKAAQYFGIKLVRTPLDADYRADVAAMREAITPN-----TVVVAGSAPGYP 251
Query: 742 HGVYEEGIDEICKIIHDNGGQVYMDGAN------MNAQVGLTSP----GYIGADVCHLNL 791
HGV + I EI + ++G ++D ++G P G +
Sbjct: 252 HGVVDP-IPEIAALAAEHGIGCHVDACLGGFILPWAERLGYPVPPFDFRLEGVTSVSADT 310
Query: 792 HKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGI---PAPEKSQPLGTIAAAPWG 848
HK G + + L + GG+ P S+P G ++A W
Sbjct: 311 HKYGYGAKGTS----VILYRRPDLLHYQYFIAADWPGGLYFSPTFAGSRP-GALSATAW- 364
Query: 849 SALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVD 908
++ +G +G +A++ + A+ + + P L + D
Sbjct: 365 --------AAMLS-LGEEGYLDATRRILQAADRLKAGVRAI-PSLKILGDPLWVIAVASD 414
Query: 909 LRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWP 940
+ V + + G+ + P
Sbjct: 415 --------ELNIYQVMEEMAGRGWRLNGLHRP 438
|
| >2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14, autoinhibition, substituted aldamine, lyase; HET: PLP; 1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A* 1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A* Length = 452 | Back alignment and structure |
|---|
Score = 53.8 bits (129), Expect = 2e-07
Identities = 49/291 (16%), Positives = 92/291 (31%), Gaps = 39/291 (13%)
Query: 669 RAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAK-GNINIEELRKAAEAN 727
R +A G ++ A +++ + ++ + + EA
Sbjct: 128 RKRMEAAGKPTDKPNLVCGPVQICWHKFARYWDVELREIPMRPGQLFMDPKRMI---EAC 184
Query: 728 RDNLSTLMVTYPST-HGVYEEGIDEICKII------HDNGGQVYMDGANMNAQVGLTSPG 780
+N ++ T+ T G Y E + + +++D A+ G +P
Sbjct: 185 DENTIGVVPTFGVTYTGNY-EFPQPLHDALDKFQADTGIDIDMHIDAASG----GFLAPF 239
Query: 781 YIGADVCHLNLHKTFCIPHGGGGPGMGPIGV------KKHLAPFLPSHPVVSTGGI---P 831
V L + I G G+ P+G + P V GG
Sbjct: 240 VAPDIVWDFRLPRVKSISASGHKFGLAPLGCGWVIWRDEEALPQELVFNVDYLGGQIGTF 299
Query: 832 APEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK--H 889
A S+P G + A Y +G +G T+ + A Y+A + K
Sbjct: 300 AINFSRPAGQVIAQ-----------YYEFLRLGREGYTKVQNASYQVAAYLADEIAKLGP 348
Query: 890 YPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWP 940
Y + G L+ ++ G D+++RL G+ P +
Sbjct: 349 YEFICTGRPDEGIPAVCFKLKDGEDP-GYTLYDLSERLRLRGWQVPAFTLG 398
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 52.5 bits (125), Expect = 6e-07
Identities = 53/358 (14%), Positives = 107/358 (29%), Gaps = 93/358 (25%)
Query: 15 RLVNESKQLSRNHRESKSSAAAAATYTPSRYLSSLSCA--PFVCS---NNSRSDLLQSRN 69
L + S L+ E KS P L P S + R L N
Sbjct: 290 SLDHHSMTLT--PDEVKSLLLKYLDCRPQD-LPREVLTTNPRRLSIIAESIRDGLATWDN 346
Query: 70 MSHHNVNGYGLGSQTRGISVEALKPSDTFARRHNSAT-PEDQAKMSELVGLDNLDSL--- 125
H N + + S+ L+P++ + P A + ++ L +
Sbjct: 347 WKHVNCDKL---TTIIESSLNVLEPAEYRKMFDRLSVFPPS-AHIPTIL----LSLIWFD 398
Query: 126 IDATVPKSIRIDSMKFSKFDEGLTESQ---------MIEHMQKLASMNKV----YKSFIG 172
+ + + K+S ++ ES + ++ ++++ Y I
Sbjct: 399 VIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYN--IP 456
Query: 173 MGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMSNAS 232
+ + + P L +Y + + + + E + F+ + D L
Sbjct: 457 KTFDSDDLIPPYLDQY-----FY-SHIGHHLKNIE-HPERMTLFRMVFLDFRFL---EQK 506
Query: 233 LLDEGTAAAEAMAMCNNIQKGKK-KTFIIASNCHPQTIDICITRADGFDIKVVVSDLKDI 291
+ + TA + ++ N +Q+ K K +I D
Sbjct: 507 IRHDSTAWNASGSILNTLQQLKFYKPYIC-----------------------------DN 537
Query: 292 DYKSGDVCGVLVQYPGTEGEVLDYGDFIKNAHANGVKVVMA--TDLLALTILKPPGEL 347
D P E V DF+ N ++ + TDLL + ++ +
Sbjct: 538 D-------------PKYERLVNAILDFLPKIEEN---LICSKYTDLLRIALMAEDEAI 579
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 50.6 bits (120), Expect = 3e-06
Identities = 55/449 (12%), Positives = 122/449 (27%), Gaps = 125/449 (27%)
Query: 281 IKVVVSDLKDIDYKSGDVCGVLV-----QYPGTEGEVLDYGDFIKNAHANGVKVV----- 330
++ V ++ I+Y L+ + Y + + N +V
Sbjct: 79 VQKFVEEVLRINY------KFLMSPIKTEQRQPSMMTRMYIEQRDRLY-NDNQVFAKYNV 131
Query: 331 ----MATDL-LALTILKPPGELGADIVVGSAQRFGVPMGYG-GPH--AAFLATSQEYKRM 382
L AL L+P ++++ G + G G A + S + +
Sbjct: 132 SRLQPYLKLRQALLELRP----AKNVLI-----DG--VL-GSGKTWVALDVCLSYKVQCK 179
Query: 383 MPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEG 442
M +I +++ + P + M Q LL + + +
Sbjct: 180 MDFKIFWLNLKNCNSPETVLEML------------------QKLLYQIDPNWTS--RSDH 219
Query: 443 LKTIAQRVHGLAGTFA--LGLKKLGTV-----EVQGLPFFDTVKVKC------ADAHAIA 489
I R+H + L K VQ ++ + C
Sbjct: 220 SSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTD 279
Query: 490 SAAYKIEMNLRVVDSNTVTASFDETTTLEDVDKLFIVFAGGKSVPFTAASLAEEVETAIP 549
+ ++ + + + L + + + L EV T P
Sbjct: 280 FLSAATTTHISLDHHSM---TLTPDEVKS----LLLKYLDCR-----PQDLPREVLTTNP 327
Query: 550 ------SGLTRESP----YLTHPVFNKYHTEHELLRYIHLLQSKELSLCH---SMIPLGS 596
+ R+ H +K T E +++L+ E S+ P +
Sbjct: 328 RRLSIIAESIRDGLATWDNWKHVNCDKLTTIIES--SLNVLEPAEYRKMFDRLSVFPPSA 385
Query: 597 CTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFDSFSL---Q 653
+ T ++ + W ++ + + +SL Q
Sbjct: 386 -----HIPTILLSLIW-------------FDVIKSDVMVVVNK-------LHKYSLVEKQ 420
Query: 654 PNAGAAGEYAGLMVIRAYHKARGDHHRNV 682
P + + ++ + HR++
Sbjct: 421 PKESTISIPSIYLELKVKLENEYALHRSI 449
|
| >3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase, pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis thaliana} Length = 502 | Back alignment and structure |
|---|
Score = 47.0 bits (111), Expect = 3e-05
Identities = 50/340 (14%), Positives = 108/340 (31%), Gaps = 59/340 (17%)
Query: 659 AGEYAGLMVIRAYHKARGDHHRNVC----IIPVSAHGTNPATAAMCGMKIVSVGTDAKG- 713
A AGL R + R + V + + A +++ V
Sbjct: 129 AIMLAGLAFKRKWQNKRKAEGKPVDKPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYY 188
Query: 714 NINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQ 773
++ ++ + N ++ ++ + +G +E+ + + ++ + + G +
Sbjct: 189 VMDPQQAVDMVDENTICVAAILGSTL--NGEFED-VKLLNDLLVEKNKE---TGWDTPIH 242
Query: 774 VGLTSPGYIGADVCHLNLHKTFCIP-----------HGGGGPGMGPIGVKKHLAPFLPSH 822
V S G+I + F +P +G G+G + + LP
Sbjct: 243 VDAASGGFIAPFLYPELEW-DFRLPLVKSINVSGHKYGLVYAGIGWVIWRN--KEDLPEE 299
Query: 823 PVVST---GGI---PAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAI 876
+ G S+ + A Y + +G +G +
Sbjct: 300 LIFHINYLGADQPTFTLNFSKGSSQVIAQ-----------YYQLIRLGHEGYRNVMENCR 348
Query: 877 LNANYMAKRLEK--HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHG 934
N + + LEK + I+ + + V LK+++ +++ L YG
Sbjct: 349 ENMIVLREGLEKTERFNIVSKDEGVPL-----VAFS-LKDSSCHTEFEISDMLRRYG--- 399
Query: 935 PTMSWPVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRL 974
W VP M P ++ + +V+ S RL
Sbjct: 400 ----WIVPAYTM--PPNAQHITVLRVVIREDFSRTLAERL 433
|
| >1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase, pyridoxal 5'-phosphate, monovalent cation binding site; HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2 Length = 467 | Back alignment and structure |
|---|
Score = 45.6 bits (107), Expect = 7e-05
Identities = 47/249 (18%), Positives = 81/249 (32%), Gaps = 43/249 (17%)
Query: 585 LSLCHSMIPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTI 644
L I L + + T M W + D+A + +L + +
Sbjct: 39 LPSSAVYIDLLTDS----GTNAMSDHQWAAMIT------GDEAYAGSRNYYDLKDKAKEL 88
Query: 645 TGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKI 704
+D G E V+ Y + G V I T A + G K
Sbjct: 89 FNYDYIIPAHQ-GRGAENILFPVLLKYKQKEGKAKNPVFISNFHFDTTA-AHVELNGCKA 146
Query: 705 VSVGTDA----------KGNINIEELRKA-AEANRDNLSTLMVTYPSTHG----VYEEGI 749
+++ T+ KG+ +I++L++ A+ DN+ ++ T V +
Sbjct: 147 INIVTEKAFDSETYDDWKGDFDIKKLKENIAQHGADNIVAIVSTVTCNSAGGQPVSMSNL 206
Query: 750 DEICKIIHDNGGQVYMDGANM--NAQ-VGLTSPGYIG-------------ADVCHLNLHK 793
E+ +I +G V MD A NA + P Y AD ++ K
Sbjct: 207 KEVYEIAKQHGIFVVMDSARFCENAYFIKARDPKYKNATIKEVIFDMYKYADALTMSAKK 266
Query: 794 TFCIPHGGG 802
+ GG
Sbjct: 267 DPLLNIGGL 275
|
| >2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A* Length = 371 | Back alignment and structure |
|---|
Score = 43.6 bits (103), Expect = 2e-04
Identities = 37/238 (15%), Positives = 73/238 (30%), Gaps = 49/238 (20%)
Query: 666 MVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCG--MKIVSVGTDAKGNINIEELRKA 723
V+ + K ++ + H ++ A G + +V I E +
Sbjct: 84 AVMHSLAKK-DAW----VVMDENCHYSSYVAAERAGLNIALVPKTDYPDYAITPENFAQT 138
Query: 724 AEANRDNLSTLMVTYPSTHGVYEEG----IDEICKIIHDNGGQVYMDGA------NMNAQ 773
E + ++ T+ G + +I K+ + + ++GA ++ +
Sbjct: 139 IEETKKRGEVVLALI--TYPDGNYGNLPDVKKIAKVCSEYDVPLLVNGAYAIGRMPVSLK 196
Query: 774 VGLTSPGYIGADVCHLNLHKTFCIPHGGGGPGMGPIGV---KKHLAPFLPSHPVVSTGGI 830
IGAD + HK+ GPIGV K+ A + +
Sbjct: 197 E-------IGADFIVGSGHKSM-------AA-SGPIGVMGMKEEWAEIVLRR----SEKY 237
Query: 831 PAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK 888
E T A + L S+ ++ + + A A +EK
Sbjct: 238 KNKEVELLGCTARGAT---IITLMASFPHVRER-----IKRWDEEVEKARRFAAEMEK 287
|
| >2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme, pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A 2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A* Length = 456 | Back alignment and structure |
|---|
Score = 42.0 bits (98), Expect = 9e-04
Identities = 31/212 (14%), Positives = 64/212 (30%), Gaps = 43/212 (20%)
Query: 622 APADQAQGYQEMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRN 681
D+A E F +L + + GF G E + +
Sbjct: 65 MMGDEAYAGSENFYHLERTVQELFGFKHIVPTHQ-GRGAENLLSQL----------AIKP 113
Query: 682 VCIIPVSAHG-TNPATAAMCGMKIVSVGTDA----------KGNINIEELRKA-AEANRD 729
+ + + T G V + D KG+I++++L+K E +
Sbjct: 114 GQYVAGNMYFTTTRYHQEKNGAVFVDIVRDEAHDAGLNIAFKGDIDLKKLQKLIDEKGAE 173
Query: 730 NLSTLMVTYPSTHG----VYEEGIDEICKIIHDNGGQVYMDGA---NMNAQVGLTSPGYI 782
N++ + + V + + ++ +G +V+ D + G+
Sbjct: 174 NIAYICLAVTVNLAGGQPVSMANMRAVRELTEAHGIKVFYDATRCVENAYFIKEQEQGFE 233
Query: 783 G-------------ADVCHLNLHKTFCIPHGG 801
AD C ++ K + GG
Sbjct: 234 NKSIAEIVHEMFSYADGCTMSGKKDCLVNIGG 265
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 985 | |||
| 1wyu_A | 438 | Glycine dehydrogenase (decarboxylating) subunit 1; | 100.0 | |
| 1wyu_B | 474 | Glycine dehydrogenase subunit 2 (P-protein); alpha | 100.0 | |
| 1wyu_B | 474 | Glycine dehydrogenase subunit 2 (P-protein); alpha | 100.0 | |
| 1wyu_A | 438 | Glycine dehydrogenase (decarboxylating) subunit 1; | 100.0 | |
| 3mc6_A | 497 | Sphingosine-1-phosphate lyase; carboxy-lyase activ | 99.97 | |
| 3mc6_A | 497 | Sphingosine-1-phosphate lyase; carboxy-lyase activ | 99.96 | |
| 2dgk_A | 452 | GAD-beta, GADB, glutamate decarboxylase beta; gadb | 99.96 | |
| 3mad_A | 514 | Sphingosine-1-phosphate lyase; carboxy-lyase activ | 99.95 | |
| 2jis_A | 515 | Cysteine sulfinic acid decarboxylase; pyridoxal ph | 99.94 | |
| 3f9t_A | 397 | TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L | 99.94 | |
| 3vp6_A | 511 | Glutamate decarboxylase 1; catalytic loop SWAP, ly | 99.94 | |
| 2jis_A | 515 | Cysteine sulfinic acid decarboxylase; pyridoxal ph | 99.94 | |
| 4e1o_A | 481 | HDC, histidine decarboxylase; lyase; HET: PLP PVH; | 99.94 | |
| 3k40_A | 475 | Aromatic-L-amino-acid decarboxylase; PLP dependent | 99.94 | |
| 2okj_A | 504 | Glutamate decarboxylase 1; PLP-dependent decarboxy | 99.94 | |
| 1js3_A | 486 | DDC;, DOPA decarboxylase; carbidopa, parkinson'S d | 99.94 | |
| 2dgk_A | 452 | GAD-beta, GADB, glutamate decarboxylase beta; gadb | 99.93 | |
| 3hbx_A | 502 | GAD 1, glutamate decarboxylase 1; calmodulin-bindi | 99.93 | |
| 2qma_A | 497 | Diaminobutyrate-pyruvate transaminase and L-2,4- d | 99.92 | |
| 2z67_A | 456 | O-phosphoseryl-tRNA(SEC) selenium transferase; sel | 99.91 | |
| 4hvk_A | 382 | Probable cysteine desulfurase 2; transferase and I | 99.91 | |
| 3e9k_A | 465 | Kynureninase; kynurenine-L-hydrolase, kynurenine h | 99.91 | |
| 3zrp_A | 384 | Serine-pyruvate aminotransferase (AGXT); HET: PLP; | 99.91 | |
| 2dr1_A | 386 | PH1308 protein, 386AA long hypothetical serine ami | 99.91 | |
| 1elu_A | 390 | L-cysteine/L-cystine C-S lyase; FES cluster biosyn | 99.91 | |
| 3nnk_A | 411 | Ureidoglycine-glyoxylate aminotransferase; PLP-dep | 99.91 | |
| 3f9t_A | 397 | TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L | 99.9 | |
| 3vp6_A | 511 | Glutamate decarboxylase 1; catalytic loop SWAP, ly | 99.9 | |
| 3isl_A | 416 | Purine catabolism protein PUCG; pyridoxalphosphate | 99.9 | |
| 3lvm_A | 423 | Cysteine desulfurase; structural genomics, montrea | 99.9 | |
| 2okj_A | 504 | Glutamate decarboxylase 1; PLP-dependent decarboxy | 99.9 | |
| 1kmj_A | 406 | Selenocysteine lyase; persulfide perselenide NIFS | 99.9 | |
| 1qz9_A | 416 | Kynureninase; kynurenine, tryptophan, PLP, vitamin | 99.9 | |
| 4hvk_A | 382 | Probable cysteine desulfurase 2; transferase and I | 99.9 | |
| 3kgw_A | 393 | Alanine-glyoxylate aminotransferase; AAH25799.1, p | 99.89 | |
| 1eg5_A | 384 | Aminotransferase; PLP-dependent enzymes, iron-sulf | 99.89 | |
| 3bc8_A | 450 | O-phosphoseryl-tRNA(SEC) selenium transferase; dis | 99.89 | |
| 4eb5_A | 382 | Probable cysteine desulfurase 2; scaffold, transfe | 99.89 | |
| 2z67_A | 456 | O-phosphoseryl-tRNA(SEC) selenium transferase; sel | 99.89 | |
| 3mad_A | 514 | Sphingosine-1-phosphate lyase; carboxy-lyase activ | 99.89 | |
| 1t3i_A | 420 | Probable cysteine desulfurase; PLP-binding enzyme, | 99.89 | |
| 1kmj_A | 406 | Selenocysteine lyase; persulfide perselenide NIFS | 99.89 | |
| 2huf_A | 393 | Alanine glyoxylate aminotransferase; alpha and bet | 99.89 | |
| 3cai_A | 406 | Possible aminotransferase; RV3778C; 1.80A {Mycobac | 99.89 | |
| 2z9v_A | 392 | Aspartate aminotransferase; pyridoxamine, pyruvate | 99.89 | |
| 1t3i_A | 420 | Probable cysteine desulfurase; PLP-binding enzyme, | 99.89 | |
| 2yrr_A | 353 | Aminotransferase, class V; structural genomics, NP | 99.89 | |
| 3f0h_A | 376 | Aminotransferase; RER070207000802, structural geno | 99.89 | |
| 3e9k_A | 465 | Kynureninase; kynurenine-L-hydrolase, kynurenine h | 99.89 | |
| 2ch1_A | 396 | 3-hydroxykynurenine transaminase; PLP-enzyme, kynu | 99.88 | |
| 1m32_A | 366 | 2-aminoethylphosphonate-pyruvate aminotransferase; | 99.88 | |
| 1elu_A | 390 | L-cysteine/L-cystine C-S lyase; FES cluster biosyn | 99.88 | |
| 1vjo_A | 393 | Alanine--glyoxylate aminotransferase; 17130350, AL | 99.88 | |
| 1js3_A | 486 | DDC;, DOPA decarboxylase; carbidopa, parkinson'S d | 99.88 | |
| 3cai_A | 406 | Possible aminotransferase; RV3778C; 1.80A {Mycobac | 99.88 | |
| 3hbx_A | 502 | GAD 1, glutamate decarboxylase 1; calmodulin-bindi | 99.88 | |
| 1iug_A | 352 | Putative aspartate aminotransferase; wild type, py | 99.88 | |
| 3ke3_A | 379 | Putative serine-pyruvate aminotransferase; structu | 99.88 | |
| 3e77_A | 377 | Phosphoserine aminotransferase; SERC, PLP, structu | 99.87 | |
| 3isl_A | 416 | Purine catabolism protein PUCG; pyridoxalphosphate | 99.87 | |
| 3vax_A | 400 | Putative uncharacterized protein DNDA; desulfurase | 99.87 | |
| 3zrp_A | 384 | Serine-pyruvate aminotransferase (AGXT); HET: PLP; | 99.87 | |
| 4eb5_A | 382 | Probable cysteine desulfurase 2; scaffold, transfe | 99.86 | |
| 3ke3_A | 379 | Putative serine-pyruvate aminotransferase; structu | 99.86 | |
| 3nnk_A | 411 | Ureidoglycine-glyoxylate aminotransferase; PLP-dep | 99.86 | |
| 1iug_A | 352 | Putative aspartate aminotransferase; wild type, py | 99.86 | |
| 2e7j_A | 371 | SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-st | 99.86 | |
| 1c4k_A | 730 | Protein (ornithine decarboxylase); lyase; HET: PLP | 99.86 | |
| 2dr1_A | 386 | PH1308 protein, 386AA long hypothetical serine ami | 99.86 | |
| 3hl2_A | 501 | O-phosphoseryl-tRNA(SEC) selenium transferase; sel | 99.86 | |
| 3lvm_A | 423 | Cysteine desulfurase; structural genomics, montrea | 99.86 | |
| 3f0h_A | 376 | Aminotransferase; RER070207000802, structural geno | 99.86 | |
| 2bkw_A | 385 | Alanine-glyoxylate aminotransferase 1; analine-gly | 99.85 | |
| 1eg5_A | 384 | Aminotransferase; PLP-dependent enzymes, iron-sulf | 99.85 | |
| 3ffh_A | 363 | Histidinol-phosphate aminotransferase; APC88260, l | 99.85 | |
| 2w8t_A | 427 | SPT, serine palmitoyltransferase; HET: LLP; 1.25A | 99.85 | |
| 1rv3_A | 483 | Serine hydroxymethyltransferase, cytosolic; one-ca | 99.85 | |
| 3ou5_A | 490 | Serine hydroxymethyltransferase, mitochondrial; st | 99.85 | |
| 1qz9_A | 416 | Kynureninase; kynurenine, tryptophan, PLP, vitamin | 99.85 | |
| 3qm2_A | 386 | Phosphoserine aminotransferase; structural genomic | 99.85 | |
| 3ly1_A | 354 | Putative histidinol-phosphate aminotransferase; st | 99.85 | |
| 3a9z_A | 432 | Selenocysteine lyase; PLP, cytoplasm, pyridoxal ph | 99.85 | |
| 3ffr_A | 362 | Phosphoserine aminotransferase SERC; structural ge | 99.85 | |
| 1j32_A | 388 | Aspartate aminotransferase; HET: PLP; 2.10A {Phorm | 99.85 | |
| 4e1o_A | 481 | HDC, histidine decarboxylase; lyase; HET: PLP PVH; | 99.84 | |
| 2yrr_A | 353 | Aminotransferase, class V; structural genomics, NP | 99.84 | |
| 2z9v_A | 392 | Aspartate aminotransferase; pyridoxamine, pyruvate | 99.84 | |
| 2a7v_A | 490 | Serine hydroxymethyltransferase; structural genomi | 99.84 | |
| 3tqx_A | 399 | 2-amino-3-ketobutyrate coenzyme A ligase; energy m | 99.84 | |
| 3k40_A | 475 | Aromatic-L-amino-acid decarboxylase; PLP dependent | 99.84 | |
| 3vax_A | 400 | Putative uncharacterized protein DNDA; desulfurase | 99.84 | |
| 3get_A | 365 | Histidinol-phosphate aminotransferase; NP_281508.1 | 99.84 | |
| 3dzz_A | 391 | Putative pyridoxal 5'-phosphate-dependent C-S LYA; | 99.84 | |
| 3ffr_A | 362 | Phosphoserine aminotransferase SERC; structural ge | 99.83 | |
| 3euc_A | 367 | Histidinol-phosphate aminotransferase 2; YP_297314 | 99.83 | |
| 2huf_A | 393 | Alanine glyoxylate aminotransferase; alpha and bet | 99.83 | |
| 3e77_A | 377 | Phosphoserine aminotransferase; SERC, PLP, structu | 99.83 | |
| 2fnu_A | 375 | Aminotransferase; protein-product complex, structu | 99.83 | |
| 3n0l_A | 417 | Serine hydroxymethyltransferase; alpha beta class, | 99.83 | |
| 1b5p_A | 385 | Protein (aspartate aminotransferase); pyridoxal en | 99.83 | |
| 3m5u_A | 361 | Phosphoserine aminotransferase; alpha-beta half sa | 99.83 | |
| 1gd9_A | 389 | Aspartate aminotransferase; pyridoxal enzyme, temp | 99.82 | |
| 4dq6_A | 391 | Putative pyridoxal phosphate-dependent transferas; | 99.82 | |
| 1fc4_A | 401 | 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino | 99.82 | |
| 3tfu_A | 457 | Adenosylmethionine-8-amino-7-oxononanoate aminotr; | 99.82 | |
| 1v2d_A | 381 | Glutamine aminotransferase; PLP, riken structural | 99.82 | |
| 2dou_A | 376 | Probable N-succinyldiaminopimelate aminotransfera; | 99.82 | |
| 3kgw_A | 393 | Alanine-glyoxylate aminotransferase; AAH25799.1, p | 99.82 | |
| 3nra_A | 407 | Aspartate aminotransferase; structural genomics, j | 99.82 | |
| 1bs0_A | 384 | Protein (8-amino-7-oxonanoate synthase); PLP-depen | 99.82 | |
| 2qma_A | 497 | Diaminobutyrate-pyruvate transaminase and L-2,4- d | 99.82 | |
| 3a2b_A | 398 | Serine palmitoyltransferase; vitamin B6-dependent | 99.82 | |
| 2bwn_A | 401 | 5-aminolevulinate synthase; tetrapyrrole biosynthe | 99.82 | |
| 2ch1_A | 396 | 3-hydroxykynurenine transaminase; PLP-enzyme, kynu | 99.82 | |
| 2gb3_A | 409 | Aspartate aminotransferase; TM1698, structural gen | 99.82 | |
| 2cb1_A | 412 | O-acetyl homoserine sulfhydrylase; PLP enzyme, lya | 99.82 | |
| 2vi8_A | 405 | Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, | 99.81 | |
| 1v72_A | 356 | Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2 | 99.81 | |
| 3kki_A | 409 | CAI-1 autoinducer synthase; quorum sensing, CQSA, | 99.81 | |
| 2z61_A | 370 | Probable aspartate aminotransferase 2; amino acid | 99.81 | |
| 1o4s_A | 389 | Aspartate aminotransferase; TM1255, structural gen | 99.81 | |
| 2dkj_A | 407 | Serine hydroxymethyltransferase; PLP dependent enz | 99.81 | |
| 3ele_A | 398 | Amino transferase; RER070207001803, structural gen | 99.81 | |
| 2o0r_A | 411 | RV0858C (N-succinyldiaminopimelate aminotransfera; | 99.81 | |
| 3dr4_A | 391 | Putative perosamine synthetase; deoxysugar, pyrido | 99.81 | |
| 1u08_A | 386 | Hypothetical aminotransferase YBDL; alpha beta pro | 99.81 | |
| 2oat_A | 439 | Ornithine aminotransferase; 5-fluoromethylornithin | 99.81 | |
| 1c4k_A | 730 | Protein (ornithine decarboxylase); lyase; HET: PLP | 99.8 | |
| 3hmu_A | 472 | Aminotransferase, class III; structural genomics, | 99.8 | |
| 1yiz_A | 429 | Kynurenine aminotransferase; glutamine transaminas | 99.8 | |
| 1vjo_A | 393 | Alanine--glyoxylate aminotransferase; 17130350, AL | 99.8 | |
| 3h14_A | 391 | Aminotransferase, classes I and II; YP_167802.1, S | 99.8 | |
| 3qm2_A | 386 | Phosphoserine aminotransferase; structural genomic | 99.8 | |
| 1svv_A | 359 | Threonine aldolase; structural genomics, structura | 99.8 | |
| 3dyd_A | 427 | Tyrosine aminotransferase; PLP, SGC, structural ge | 99.8 | |
| 3l8a_A | 421 | METC, putative aminotransferase, probable beta-cys | 99.8 | |
| 3frk_A | 373 | QDTB; aminotransferase, sugar-modification, natura | 99.8 | |
| 3gbx_A | 420 | Serine hydroxymethyltransferase; structural genomi | 99.8 | |
| 3g0t_A | 437 | Putative aminotransferase; NP_905498.1, putative a | 99.8 | |
| 3cq5_A | 369 | Histidinol-phosphate aminotransferase; PLP, PMP, a | 99.8 | |
| 2pb2_A | 420 | Acetylornithine/succinyldiaminopimelate aminotran; | 99.8 | |
| 2c81_A | 418 | Glutamine-2-deoxy-scyllo-inosose aminotransferase; | 99.8 | |
| 3p1t_A | 337 | Putative histidinol-phosphate aminotransferase; PL | 99.8 | |
| 4adb_A | 406 | Succinylornithine transaminase; transferase, PLP e | 99.79 | |
| 2oga_A | 399 | Transaminase; PLP-dependent enzyme, desosamine, de | 99.79 | |
| 3h7f_A | 447 | Serine hydroxymethyltransferase 1; cytoplasm, one- | 99.79 | |
| 2e7j_A | 371 | SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-st | 99.79 | |
| 1z7d_A | 433 | Ornithine aminotransferase; structural genomics co | 99.79 | |
| 3uwc_A | 374 | Nucleotide-sugar aminotransferase; lipopolysacchar | 99.79 | |
| 2w8t_A | 427 | SPT, serine palmitoyltransferase; HET: LLP; 1.25A | 99.79 | |
| 3ezs_A | 376 | Aminotransferase ASPB; NP_207418.1, structural gen | 99.79 | |
| 2c0r_A | 362 | PSAT, phosphoserine aminotransferase; pyridoxal-5' | 99.79 | |
| 3ruy_A | 392 | Ornithine aminotransferase; structural genomics, c | 99.79 | |
| 3hdo_A | 360 | Histidinol-phosphate aminotransferase; PSI-II, his | 99.79 | |
| 3nx3_A | 395 | Acoat, acetylornithine aminotransferase; csgid, st | 99.79 | |
| 1xi9_A | 406 | Putative transaminase; alanine aminotransferase, s | 99.79 | |
| 2bkw_A | 385 | Alanine-glyoxylate aminotransferase 1; analine-gly | 99.79 | |
| 2fq6_A | 415 | Cystathionine beta-lyase; protein-inhibitor comple | 99.79 | |
| 2x5d_A | 412 | Probable aminotransferase; HET: LLP PLP; 2.25A {Ps | 99.79 | |
| 1pff_A | 331 | Methionine gamma-lyase; homocysteine; 2.50A {Trich | 99.79 | |
| 1fg7_A | 356 | Histidinol phosphate aminotransferase; HISC, histi | 99.79 | |
| 3kax_A | 383 | Aminotransferase, classes I and II; PLP, C-S lyase | 99.79 | |
| 1m32_A | 366 | 2-aminoethylphosphonate-pyruvate aminotransferase; | 99.79 | |
| 3fvs_A | 422 | Kynurenine--oxoglutarate transaminase 1; alpha bet | 99.79 | |
| 2x3l_A | 446 | ORN/Lys/Arg decarboxylase family protein; lyase; H | 99.79 | |
| 2o1b_A | 404 | Aminotransferase, class I; aminotrasferase; HET: P | 99.79 | |
| 3op7_A | 375 | Aminotransferase class I and II; PLP-dependent tra | 99.79 | |
| 3jtx_A | 396 | Aminotransferase; NP_283882.1, structural genomics | 99.78 | |
| 3b46_A | 447 | Aminotransferase BNA3; kynurenine aminotransferase | 99.78 | |
| 3ecd_A | 425 | Serine hydroxymethyltransferase 2; ssgcid, decode, | 99.78 | |
| 3ftb_A | 361 | Histidinol-phosphate aminotransferase; structural | 99.78 | |
| 1mdo_A | 393 | ARNB aminotransferase; type 1 aminotransferase fol | 99.78 | |
| 1b9h_A | 388 | AHBA synthase, protein (3-amino-5-hydroxybenzoic a | 99.78 | |
| 3get_A | 365 | Histidinol-phosphate aminotransferase; NP_281508.1 | 99.78 | |
| 2zyj_A | 397 | Alpha-aminodipate aminotransferase; alpha-aminoadi | 99.78 | |
| 3tqx_A | 399 | 2-amino-3-ketobutyrate coenzyme A ligase; energy m | 99.78 | |
| 1pff_A | 331 | Methionine gamma-lyase; homocysteine; 2.50A {Trich | 99.78 | |
| 3a9z_A | 432 | Selenocysteine lyase; PLP, cytoplasm, pyridoxal ph | 99.78 | |
| 2vyc_A | 755 | Biodegradative arginine decarboxylase; pyridoxal p | 99.78 | |
| 3m5u_A | 361 | Phosphoserine aminotransferase; alpha-beta half sa | 99.78 | |
| 3ffh_A | 363 | Histidinol-phosphate aminotransferase; APC88260, l | 99.77 | |
| 3frk_A | 373 | QDTB; aminotransferase, sugar-modification, natura | 99.77 | |
| 1bw0_A | 416 | TAT, protein (tyrosine aminotransferase); tyrosine | 99.77 | |
| 1gc0_A | 398 | Methionine gamma-lyase; pyridoxal-5'-phosphate; HE | 99.77 | |
| 3gju_A | 460 | Putative aminotransferase; pyridoxal phosphate, PL | 99.77 | |
| 3i5t_A | 476 | Aminotransferase; pyridoxal 5'-phosphate, PSI-2, N | 99.77 | |
| 1qgn_A | 445 | Protein (cystathionine gamma-synthase); methionine | 99.77 | |
| 2zc0_A | 407 | Alanine glyoxylate transaminase; alanine:glyoxylat | 99.77 | |
| 3qhx_A | 392 | Cystathionine gamma-synthase METB (CGS); structura | 99.77 | |
| 1vp4_A | 425 | Aminotransferase, putative; structural genomics, j | 99.77 | |
| 3n5m_A | 452 | Adenosylmethionine-8-amino-7-oxononanoate aminotr; | 99.77 | |
| 3qhx_A | 392 | Cystathionine gamma-synthase METB (CGS); structura | 99.77 | |
| 3piu_A | 435 | 1-aminocyclopropane-1-carboxylate synthase; fruit | 99.77 | |
| 1c7n_A | 399 | Cystalysin; transferase, aminotransferase, pyridox | 99.77 | |
| 1gc0_A | 398 | Methionine gamma-lyase; pyridoxal-5'-phosphate; HE | 99.77 | |
| 1e5e_A | 404 | MGL, methionine gamma-lyase; methionine biosynthes | 99.77 | |
| 2po3_A | 424 | 4-dehydrase; external aldimine, PLP, aminotransfer | 99.76 | |
| 3fdb_A | 377 | Beta C-S lyase, putative PLP-dependent beta-cystat | 99.76 | |
| 1o69_A | 394 | Aminotransferase; structural genomics, unknown fun | 99.76 | |
| 3bb8_A | 437 | CDP-4-keto-6-deoxy-D-glucose-3-dehydrase; aspartat | 99.76 | |
| 1jg8_A | 347 | L-ALLO-threonine aldolase; glycine biosynthesis, p | 99.76 | |
| 2x3l_A | 446 | ORN/Lys/Arg decarboxylase family protein; lyase; H | 99.76 | |
| 1fc4_A | 401 | 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino | 99.76 | |
| 2cb1_A | 412 | O-acetyl homoserine sulfhydrylase; PLP enzyme, lya | 99.76 | |
| 1iay_A | 428 | ACC synthase 2, 1-aminocyclopropane-1-carboxylate | 99.76 | |
| 3dxv_A | 439 | Alpha-amino-epsilon-caprolactam racemase; fold-TYP | 99.76 | |
| 2ord_A | 397 | Acoat, acetylornithine aminotransferase; TM1785, a | 99.76 | |
| 2eh6_A | 375 | Acoat, acetylornithine aminotransferase; ARGD, str | 99.76 | |
| 1s0a_A | 429 | Adenosylmethionine-8-amino-7-oxononanoate aminotra | 99.76 | |
| 3dod_A | 448 | Adenosylmethionine-8-amino-7-oxononanoate aminotr; | 99.76 | |
| 2r2n_A | 425 | Kynurenine/alpha-aminoadipate aminotransferase mit | 99.76 | |
| 4ao9_A | 454 | Beta-phenylalanine aminotransferase; HET: PLP; 1.5 | 99.76 | |
| 1qgn_A | 445 | Protein (cystathionine gamma-synthase); methionine | 99.76 | |
| 2rfv_A | 398 | Methionine gamma-lyase; pyridoxal-5'-phosphate, PL | 99.76 | |
| 3b8x_A | 390 | WBDK, pyridoxamine 5-phosphate-dependent dehydrase | 99.76 | |
| 3nyt_A | 367 | Aminotransferase WBPE; PLP binding, nucleotide-sug | 99.75 | |
| 2bwn_A | 401 | 5-aminolevulinate synthase; tetrapyrrole biosynthe | 99.75 | |
| 3acz_A | 389 | Methionine gamma-lyase; L-methionine; HET: LLP; 1. | 99.75 | |
| 2vyc_A | 755 | Biodegradative arginine decarboxylase; pyridoxal p | 99.75 | |
| 3e2y_A | 410 | Kynurenine-oxoglutarate transaminase 3; alpha beta | 99.75 | |
| 1cs1_A | 386 | CGS, protein (cystathionine gamma-synthase); lyase | 99.75 | |
| 1cs1_A | 386 | CGS, protein (cystathionine gamma-synthase); lyase | 99.75 | |
| 3ez1_A | 423 | Aminotransferase MOCR family; YP_604413.1, struct | 99.75 | |
| 3aow_A | 448 | Putative uncharacterized protein PH0207; protein-P | 99.75 | |
| 3bc8_A | 450 | O-phosphoseryl-tRNA(SEC) selenium transferase; dis | 99.75 | |
| 3i16_A | 427 | Aluminum resistance protein; YP_878183.1, carbon-s | 99.75 | |
| 2x5f_A | 430 | Aspartate_tyrosine_phenylalanine pyridoxal-5' phos | 99.75 | |
| 2c0r_A | 362 | PSAT, phosphoserine aminotransferase; pyridoxal-5' | 99.75 | |
| 1w23_A | 360 | Phosphoserine aminotransferase; pyridoxal-5'-phosp | 99.75 | |
| 4e3q_A | 473 | Pyruvate transaminase; aminotransferase, transfera | 99.75 | |
| 1d2f_A | 390 | MALY protein; aminotransferase fold, large PLP-bin | 99.75 | |
| 3i16_A | 427 | Aluminum resistance protein; YP_878183.1, carbon-s | 99.74 | |
| 1vef_A | 395 | Acetylornithine/acetyl-lysine aminotransferase; PL | 99.74 | |
| 4atq_A | 456 | 4-aminobutyrate transaminase; transferase; HET: PL | 99.74 | |
| 4a6r_A | 459 | Omega transaminase; transferase, PLP-binding enzym | 99.74 | |
| 3acz_A | 389 | Methionine gamma-lyase; L-methionine; HET: LLP; 1. | 99.74 | |
| 3rq1_A | 418 | Aminotransferase class I and II; structural genomi | 99.74 | |
| 3ju7_A | 377 | Putative PLP-dependent aminotransferase; NP_978343 | 99.74 | |
| 1lc5_A | 364 | COBD, L-threonine-O-3-phosphate decarboxylase; PLP | 99.74 | |
| 3uwc_A | 374 | Nucleotide-sugar aminotransferase; lipopolysacchar | 99.74 | |
| 3ly1_A | 354 | Putative histidinol-phosphate aminotransferase; st | 99.74 | |
| 2rfv_A | 398 | Methionine gamma-lyase; pyridoxal-5'-phosphate, PL | 99.74 | |
| 1svv_A | 359 | Threonine aldolase; structural genomics, structura | 99.73 | |
| 2fq6_A | 415 | Cystathionine beta-lyase; protein-inhibitor comple | 99.73 | |
| 3hdo_A | 360 | Histidinol-phosphate aminotransferase; PSI-II, his | 99.73 | |
| 3kki_A | 409 | CAI-1 autoinducer synthase; quorum sensing, CQSA, | 99.73 | |
| 3jzl_A | 409 | Putative cystathionine beta-lyase involved in ALU | 99.73 | |
| 1v2d_A | 381 | Glutamine aminotransferase; PLP, riken structural | 99.73 | |
| 2cjg_A | 449 | L-lysine-epsilon aminotransferase; internal aldimi | 99.73 | |
| 3if2_A | 444 | Aminotransferase; YP_265399.1, structura genomics, | 99.73 | |
| 2fnu_A | 375 | Aminotransferase; protein-product complex, structu | 99.73 | |
| 3ppl_A | 427 | Aspartate aminotransferase; dimer, PLP-dependent t | 99.73 | |
| 3a2b_A | 398 | Serine palmitoyltransferase; vitamin B6-dependent | 99.73 | |
| 3l44_A | 434 | Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha | 99.73 | |
| 2z61_A | 370 | Probable aspartate aminotransferase 2; amino acid | 99.73 | |
| 3euc_A | 367 | Histidinol-phosphate aminotransferase 2; YP_297314 | 99.73 | |
| 1n8p_A | 393 | Cystathionine gamma-lyase; three open alpha/beta s | 99.72 | |
| 1j32_A | 388 | Aspartate aminotransferase; HET: PLP; 2.10A {Phorm | 99.72 | |
| 4ffc_A | 453 | 4-aminobutyrate aminotransferase (GABT); structura | 99.72 | |
| 1bs0_A | 384 | Protein (8-amino-7-oxonanoate synthase); PLP-depen | 99.72 | |
| 3oks_A | 451 | 4-aminobutyrate transaminase; ssgcid, transferase, | 99.72 | |
| 3fq8_A | 427 | Glutamate-1-semialdehyde 2,1-aminomutase; drug res | 99.72 | |
| 2ctz_A | 421 | O-acetyl-L-homoserine sulfhydrylase; crystal, O-ac | 99.72 | |
| 1w23_A | 360 | Phosphoserine aminotransferase; pyridoxal-5'-phosp | 99.72 | |
| 3dr4_A | 391 | Putative perosamine synthetase; deoxysugar, pyrido | 99.72 | |
| 3cog_A | 403 | Cystathionine gamma-lyase; CTH, PLP, propargylglyc | 99.72 | |
| 1e5e_A | 404 | MGL, methionine gamma-lyase; methionine biosynthes | 99.71 | |
| 2gb3_A | 409 | Aspartate aminotransferase; TM1698, structural gen | 99.71 | |
| 3p1t_A | 337 | Putative histidinol-phosphate aminotransferase; PL | 99.71 | |
| 4e77_A | 429 | Glutamate-1-semialdehyde 2,1-aminomutase; structur | 99.71 | |
| 3g0t_A | 437 | Putative aminotransferase; NP_905498.1, putative a | 99.71 | |
| 3cog_A | 403 | Cystathionine gamma-lyase; CTH, PLP, propargylglyc | 99.71 | |
| 3k28_A | 429 | Glutamate-1-semialdehyde 2,1-aminomutase 2; biosyn | 99.71 | |
| 1mdo_A | 393 | ARNB aminotransferase; type 1 aminotransferase fol | 99.7 | |
| 1sff_A | 426 | 4-aminobutyrate aminotransferase; enzyme complexes | 99.7 | |
| 3dzz_A | 391 | Putative pyridoxal 5'-phosphate-dependent C-S LYA; | 99.7 | |
| 3lws_A | 357 | Aromatic amino acid beta-eliminating lyase/threoni | 99.7 | |
| 3qgu_A | 449 | LL-diaminopimelate aminotransferase; L-lysine, pyr | 99.7 | |
| 3i4j_A | 430 | Aminotransferase, class III; structural GENOMICS,N | 99.7 | |
| 3d6k_A | 422 | Putative aminotransferase; APC82464, corynebacteri | 99.7 | |
| 2eh6_A | 375 | Acoat, acetylornithine aminotransferase; ARGD, str | 99.7 | |
| 3ri6_A | 430 | O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate | 99.7 | |
| 2fyf_A | 398 | PSAT, phosphoserine aminotransferase; PLP-dependen | 99.7 | |
| 3a8u_X | 449 | Omega-amino acid--pyruvate aminotransferase; large | 99.7 | |
| 3n75_A | 715 | LDC, lysine decarboxylase, inducible; pyridoxal-5' | 99.7 | |
| 3ndn_A | 414 | O-succinylhomoserine sulfhydrylase; seattle struct | 99.69 | |
| 1n8p_A | 393 | Cystathionine gamma-lyase; three open alpha/beta s | 99.69 | |
| 3ndn_A | 414 | O-succinylhomoserine sulfhydrylase; seattle struct | 99.69 | |
| 1u08_A | 386 | Hypothetical aminotransferase YBDL; alpha beta pro | 99.69 | |
| 2eo5_A | 419 | 419AA long hypothetical aminotransferase; PLP enzy | 99.69 | |
| 3t18_A | 413 | Aminotransferase class I and II; PSI-biology, MCSG | 99.69 | |
| 1lc5_A | 364 | COBD, L-threonine-O-3-phosphate decarboxylase; PLP | 99.69 | |
| 3hl2_A | 501 | O-phosphoseryl-tRNA(SEC) selenium transferase; sel | 99.69 | |
| 3nyt_A | 367 | Aminotransferase WBPE; PLP binding, nucleotide-sug | 99.69 | |
| 3hvy_A | 427 | Cystathionine beta-lyase family protein, YNBB B.S | 99.69 | |
| 3b8x_A | 390 | WBDK, pyridoxamine 5-phosphate-dependent dehydrase | 99.68 | |
| 4dq6_A | 391 | Putative pyridoxal phosphate-dependent transferas; | 99.68 | |
| 3jzl_A | 409 | Putative cystathionine beta-lyase involved in ALU | 99.68 | |
| 2ctz_A | 421 | O-acetyl-L-homoserine sulfhydrylase; crystal, O-ac | 99.68 | |
| 3cq5_A | 369 | Histidinol-phosphate aminotransferase; PLP, PMP, a | 99.68 | |
| 3ht4_A | 431 | Aluminum resistance protein; lyase, putative cysta | 99.68 | |
| 1o4s_A | 389 | Aspartate aminotransferase; TM1255, structural gen | 99.68 | |
| 3f6t_A | 533 | Aspartate aminotransferase; YP_194538.1, STRU geno | 99.68 | |
| 1fg7_A | 356 | Histidinol phosphate aminotransferase; HISC, histi | 99.68 | |
| 2dou_A | 376 | Probable N-succinyldiaminopimelate aminotransfera; | 99.67 | |
| 3nra_A | 407 | Aspartate aminotransferase; structural genomics, j | 99.67 | |
| 3ftb_A | 361 | Histidinol-phosphate aminotransferase; structural | 99.67 | |
| 3n75_A | 715 | LDC, lysine decarboxylase, inducible; pyridoxal-5' | 99.67 | |
| 2oga_A | 399 | Transaminase; PLP-dependent enzyme, desosamine, de | 99.67 | |
| 3bb8_A | 437 | CDP-4-keto-6-deoxy-D-glucose-3-dehydrase; aspartat | 99.67 | |
| 1rv3_A | 483 | Serine hydroxymethyltransferase, cytosolic; one-ca | 99.67 | |
| 2o0r_A | 411 | RV0858C (N-succinyldiaminopimelate aminotransfera; | 99.67 | |
| 3ei9_A | 432 | LL-diaminopimelate aminotransferase; lysine biosyn | 99.67 | |
| 4f4e_A | 420 | Aromatic-amino-acid aminotransferase; ssgcid, stru | 99.66 | |
| 1yiz_A | 429 | Kynurenine aminotransferase; glutamine transaminas | 99.66 | |
| 1ibj_A | 464 | CBL, cystathionine beta-lyase; PLP-dependent enzym | 99.66 | |
| 2fyf_A | 398 | PSAT, phosphoserine aminotransferase; PLP-dependen | 99.66 | |
| 2ez2_A | 456 | Beta-tyrosinase, tyrosine phenol-lyase; PLP-depend | 99.66 | |
| 1ax4_A | 467 | Tryptophanase; tryptophan biosynthesis, tryptophan | 99.66 | |
| 3g7q_A | 417 | Valine-pyruvate aminotransferase; NP_462565.1, str | 99.66 | |
| 3ri6_A | 430 | O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate | 99.66 | |
| 1uu1_A | 335 | Histidinol-phosphate aminotransferase; histidine b | 99.66 | |
| 2aeu_A | 374 | Hypothetical protein MJ0158; selenocysteine syntha | 99.66 | |
| 2po3_A | 424 | 4-dehydrase; external aldimine, PLP, aminotransfer | 99.65 | |
| 3tcm_A | 500 | Alanine aminotransferase 2; pyridoxal phosphate (P | 99.65 | |
| 2vi8_A | 405 | Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, | 99.65 | |
| 1b5p_A | 385 | Protein (aspartate aminotransferase); pyridoxal en | 99.65 | |
| 3fkd_A | 350 | L-threonine-O-3-phosphate decarboxylase; structura | 99.65 | |
| 1zod_A | 433 | DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, | 99.65 | |
| 1b9h_A | 388 | AHBA synthase, protein (3-amino-5-hydroxybenzoic a | 99.65 | |
| 3ezs_A | 376 | Aminotransferase ASPB; NP_207418.1, structural gen | 99.65 | |
| 1v72_A | 356 | Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2 | 99.64 | |
| 3dyd_A | 427 | Tyrosine aminotransferase; PLP, SGC, structural ge | 99.64 | |
| 3kax_A | 383 | Aminotransferase, classes I and II; PLP, C-S lyase | 99.64 | |
| 2dkj_A | 407 | Serine hydroxymethyltransferase; PLP dependent enz | 99.64 | |
| 3b46_A | 447 | Aminotransferase BNA3; kynurenine aminotransferase | 99.64 | |
| 1uu1_A | 335 | Histidinol-phosphate aminotransferase; histidine b | 99.64 | |
| 1xi9_A | 406 | Putative transaminase; alanine aminotransferase, s | 99.64 | |
| 3op7_A | 375 | Aminotransferase class I and II; PLP-dependent tra | 99.64 | |
| 3pj0_A | 359 | LMO0305 protein; structural genomics, joint center | 99.64 | |
| 3nmy_A | 400 | Xometc, cystathionine gamma-lyase-like protein; Cy | 99.64 | |
| 2yky_A | 465 | Beta-transaminase; transferase; HET: PLP SFE; 1.69 | 99.45 | |
| 1gd9_A | 389 | Aspartate aminotransferase; pyridoxal enzyme, temp | 99.64 | |
| 3n0l_A | 417 | Serine hydroxymethyltransferase; alpha beta class, | 99.64 | |
| 3ruy_A | 392 | Ornithine aminotransferase; structural genomics, c | 99.64 | |
| 3e2y_A | 410 | Kynurenine-oxoglutarate transaminase 3; alpha beta | 99.63 | |
| 3ecd_A | 425 | Serine hydroxymethyltransferase 2; ssgcid, decode, | 99.63 | |
| 1ibj_A | 464 | CBL, cystathionine beta-lyase; PLP-dependent enzym | 99.63 | |
| 1ajs_A | 412 | Aspartate aminotransferase; PIG, in the presence o | 99.63 | |
| 2o1b_A | 404 | Aminotransferase, class I; aminotrasferase; HET: P | 99.63 | |
| 2c81_A | 418 | Glutamine-2-deoxy-scyllo-inosose aminotransferase; | 99.63 | |
| 3fkd_A | 350 | L-threonine-O-3-phosphate decarboxylase; structura | 99.63 | |
| 3nmy_A | 400 | Xometc, cystathionine gamma-lyase-like protein; Cy | 99.63 | |
| 3h14_A | 391 | Aminotransferase, classes I and II; YP_167802.1, S | 99.63 | |
| 2x5d_A | 412 | Probable aminotransferase; HET: LLP PLP; 2.25A {Ps | 99.63 | |
| 2ay1_A | 394 | Aroat, aromatic amino acid aminotransferase; HET: | 99.62 | |
| 3fsl_A | 397 | Aromatic-amino-acid aminotransferase; tyrosine ami | 99.62 | |
| 3l8a_A | 421 | METC, putative aminotransferase, probable beta-cys | 99.62 | |
| 1ohv_A | 472 | 4-aminobutyrate aminotransferase; PLP-dependent en | 99.62 | |
| 1o69_A | 394 | Aminotransferase; structural genomics, unknown fun | 99.62 | |
| 2epj_A | 434 | Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy | 99.62 | |
| 3fvs_A | 422 | Kynurenine--oxoglutarate transaminase 1; alpha bet | 99.62 | |
| 3piu_A | 435 | 1-aminocyclopropane-1-carboxylate synthase; fruit | 99.62 | |
| 3fdb_A | 377 | Beta C-S lyase, putative PLP-dependent beta-cystat | 99.62 | |
| 3gbx_A | 420 | Serine hydroxymethyltransferase; structural genomi | 99.62 | |
| 2zyj_A | 397 | Alpha-aminodipate aminotransferase; alpha-aminoadi | 99.61 | |
| 7aat_A | 401 | Aspartate aminotransferase; transferase(aminotrans | 99.61 | |
| 1iay_A | 428 | ACC synthase 2, 1-aminocyclopropane-1-carboxylate | 99.61 | |
| 1yaa_A | 412 | Aspartate aminotransferase; HET: PLP; 2.05A {Sacch | 99.61 | |
| 3jtx_A | 396 | Aminotransferase; NP_283882.1, structural genomics | 99.61 | |
| 3ele_A | 398 | Amino transferase; RER070207001803, structural gen | 99.61 | |
| 1bw0_A | 416 | TAT, protein (tyrosine aminotransferase); tyrosine | 99.6 | |
| 3qgu_A | 449 | LL-diaminopimelate aminotransferase; L-lysine, pyr | 99.6 | |
| 2a7v_A | 490 | Serine hydroxymethyltransferase; structural genomi | 99.6 | |
| 3asa_A | 400 | LL-diaminopimelate aminotransferase; PLP dependent | 99.6 | |
| 2oqx_A | 467 | Tryptophanase; lyase, pyridoxal phosphate, tryptop | 99.6 | |
| 1jg8_A | 347 | L-ALLO-threonine aldolase; glycine biosynthesis, p | 99.6 | |
| 1vef_A | 395 | Acetylornithine/acetyl-lysine aminotransferase; PL | 99.6 | |
| 2zc0_A | 407 | Alanine glyoxylate transaminase; alanine:glyoxylat | 99.6 | |
| 3hvy_A | 427 | Cystathionine beta-lyase family protein, YNBB B.S | 99.59 | |
| 3b1d_A | 392 | Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococ | 99.37 | |
| 4eu1_A | 409 | Mitochondrial aspartate aminotransferase; ssgcid, | 99.58 | |
| 3ihj_A | 498 | Alanine aminotransferase 2; helix, structural geno | 99.58 | |
| 2q7w_A | 396 | Aspartate aminotransferase; mechanism-based inhibi | 99.58 | |
| 3meb_A | 448 | Aspartate aminotransferase; pyridoxal PHOS transfe | 99.58 | |
| 4adb_A | 406 | Succinylornithine transaminase; transferase, PLP e | 99.58 | |
| 2cy8_A | 453 | D-phgat, D-phenylglycine aminotransferase; structu | 99.58 | |
| 3ei9_A | 432 | LL-diaminopimelate aminotransferase; lysine biosyn | 99.57 | |
| 1vp4_A | 425 | Aminotransferase, putative; structural genomics, j | 99.57 | |
| 1c7n_A | 399 | Cystalysin; transferase, aminotransferase, pyridox | 99.57 | |
| 4a0g_A | 831 | Adenosylmethionine-8-amino-7-oxononanoate aminotra | 99.56 | |
| 3aow_A | 448 | Putative uncharacterized protein PH0207; protein-P | 99.56 | |
| 1d2f_A | 390 | MALY protein; aminotransferase fold, large PLP-bin | 99.55 | |
| 2e7u_A | 424 | Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy | 99.55 | |
| 3ez1_A | 423 | Aminotransferase MOCR family; YP_604413.1, struct | 99.54 | |
| 3ju7_A | 377 | Putative PLP-dependent aminotransferase; NP_978343 | 99.54 | |
| 2x5f_A | 430 | Aspartate_tyrosine_phenylalanine pyridoxal-5' phos | 99.54 | |
| 3asa_A | 400 | LL-diaminopimelate aminotransferase; PLP dependent | 99.53 | |
| 3nx3_A | 395 | Acoat, acetylornithine aminotransferase; csgid, st | 99.52 | |
| 2ord_A | 397 | Acoat, acetylornithine aminotransferase; TM1785, a | 99.52 | |
| 3bwn_A | 391 | AT1G70560, L-tryptophan aminotransferase; auxin sy | 99.51 | |
| 2aeu_A | 374 | Hypothetical protein MJ0158; selenocysteine syntha | 99.5 | |
| 3ppl_A | 427 | Aspartate aminotransferase; dimer, PLP-dependent t | 99.5 | |
| 3h7f_A | 447 | Serine hydroxymethyltransferase 1; cytoplasm, one- | 99.5 | |
| 3rq1_A | 418 | Aminotransferase class I and II; structural genomi | 99.5 | |
| 3g7q_A | 417 | Valine-pyruvate aminotransferase; NP_462565.1, str | 99.48 | |
| 3ht4_A | 431 | Aluminum resistance protein; lyase, putative cysta | 99.47 | |
| 3t18_A | 413 | Aminotransferase class I and II; PSI-biology, MCSG | 99.46 | |
| 2oat_A | 439 | Ornithine aminotransferase; 5-fluoromethylornithin | 99.46 | |
| 2r2n_A | 425 | Kynurenine/alpha-aminoadipate aminotransferase mit | 99.45 | |
| 2pb2_A | 420 | Acetylornithine/succinyldiaminopimelate aminotran; | 99.45 | |
| 3lws_A | 357 | Aromatic amino acid beta-eliminating lyase/threoni | 99.44 | |
| 1s0a_A | 429 | Adenosylmethionine-8-amino-7-oxononanoate aminotra | 99.44 | |
| 2ez2_A | 456 | Beta-tyrosinase, tyrosine phenol-lyase; PLP-depend | 99.43 | |
| 3if2_A | 444 | Aminotransferase; YP_265399.1, structura genomics, | 99.43 | |
| 7aat_A | 401 | Aspartate aminotransferase; transferase(aminotrans | 99.43 | |
| 2zy4_A | 546 | L-aspartate beta-decarboxylase; pyridoxal 5'-phosp | 99.43 | |
| 3tcm_A | 500 | Alanine aminotransferase 2; pyridoxal phosphate (P | 99.42 | |
| 1z7d_A | 433 | Ornithine aminotransferase; structural genomics co | 99.42 | |
| 2cjg_A | 449 | L-lysine-epsilon aminotransferase; internal aldimi | 99.39 | |
| 3d6k_A | 422 | Putative aminotransferase; APC82464, corynebacteri | 99.39 | |
| 3pj0_A | 359 | LMO0305 protein; structural genomics, joint center | 99.38 | |
| 3a8u_X | 449 | Omega-amino acid--pyruvate aminotransferase; large | 99.38 | |
| 1ajs_A | 412 | Aspartate aminotransferase; PIG, in the presence o | 99.36 | |
| 1ax4_A | 467 | Tryptophanase; tryptophan biosynthesis, tryptophan | 99.36 | |
| 3fsl_A | 397 | Aromatic-amino-acid aminotransferase; tyrosine ami | 99.35 | |
| 1yaa_A | 412 | Aspartate aminotransferase; HET: PLP; 2.05A {Sacch | 99.34 | |
| 3dxv_A | 439 | Alpha-amino-epsilon-caprolactam racemase; fold-TYP | 99.33 | |
| 3k7y_A | 405 | Aspartate aminotransferase; aminotrans pyridoxal p | 99.33 | |
| 1sff_A | 426 | 4-aminobutyrate aminotransferase; enzyme complexes | 99.31 | |
| 4f4e_A | 420 | Aromatic-amino-acid aminotransferase; ssgcid, stru | 99.31 | |
| 3ihj_A | 498 | Alanine aminotransferase 2; helix, structural geno | 99.31 | |
| 3tfu_A | 457 | Adenosylmethionine-8-amino-7-oxononanoate aminotr; | 99.31 | |
| 2ay1_A | 394 | Aroat, aromatic amino acid aminotransferase; HET: | 99.31 | |
| 1zod_A | 433 | DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, | 99.31 | |
| 3meb_A | 448 | Aspartate aminotransferase; pyridoxal PHOS transfe | 99.31 | |
| 3i5t_A | 476 | Aminotransferase; pyridoxal 5'-phosphate, PSI-2, N | 99.31 | |
| 2eo5_A | 419 | 419AA long hypothetical aminotransferase; PLP enzy | 99.31 | |
| 4ffc_A | 453 | 4-aminobutyrate aminotransferase (GABT); structura | 99.29 | |
| 4eu1_A | 409 | Mitochondrial aspartate aminotransferase; ssgcid, | 99.29 | |
| 3f6t_A | 533 | Aspartate aminotransferase; YP_194538.1, STRU geno | 99.29 | |
| 3i4j_A | 430 | Aminotransferase, class III; structural GENOMICS,N | 99.27 | |
| 3bwn_A | 391 | AT1G70560, L-tryptophan aminotransferase; auxin sy | 99.27 | |
| 3n5m_A | 452 | Adenosylmethionine-8-amino-7-oxononanoate aminotr; | 99.26 | |
| 3dod_A | 448 | Adenosylmethionine-8-amino-7-oxononanoate aminotr; | 99.26 | |
| 3gju_A | 460 | Putative aminotransferase; pyridoxal phosphate, PL | 99.25 | |
| 4a6r_A | 459 | Omega transaminase; transferase, PLP-binding enzym | 99.24 | |
| 3hmu_A | 472 | Aminotransferase, class III; structural genomics, | 99.24 | |
| 3oks_A | 451 | 4-aminobutyrate transaminase; ssgcid, transferase, | 99.23 | |
| 2hox_A | 427 | ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINA | 99.22 | |
| 3b1d_A | 392 | Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococ | 98.86 | |
| 2q7w_A | 396 | Aspartate aminotransferase; mechanism-based inhibi | 99.22 | |
| 4e77_A | 429 | Glutamate-1-semialdehyde 2,1-aminomutase; structur | 99.22 | |
| 2cy8_A | 453 | D-phgat, D-phenylglycine aminotransferase; structu | 99.21 | |
| 3fq8_A | 427 | Glutamate-1-semialdehyde 2,1-aminomutase; drug res | 99.2 | |
| 2oqx_A | 467 | Tryptophanase; lyase, pyridoxal phosphate, tryptop | 99.19 | |
| 2epj_A | 434 | Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy | 99.18 | |
| 4h51_A | 420 | Aspartate aminotransferase; ssgcid, structural gen | 99.18 | |
| 3l44_A | 434 | Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha | 99.16 | |
| 3k28_A | 429 | Glutamate-1-semialdehyde 2,1-aminomutase 2; biosyn | 99.15 | |
| 2e7u_A | 424 | Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy | 99.14 | |
| 2hox_A | 427 | ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINA | 99.12 | |
| 4ao9_A | 454 | Beta-phenylalanine aminotransferase; HET: PLP; 1.5 | 99.09 | |
| 1ohv_A | 472 | 4-aminobutyrate aminotransferase; PLP-dependent en | 99.07 | |
| 3ou5_A | 490 | Serine hydroxymethyltransferase, mitochondrial; st | 99.06 | |
| 2zy4_A | 546 | L-aspartate beta-decarboxylase; pyridoxal 5'-phosp | 98.98 | |
| 2yky_A | 465 | Beta-transaminase; transferase; HET: PLP SFE; 1.69 | 98.36 | |
| 4atq_A | 456 | 4-aminobutyrate transaminase; transferase; HET: PL | 98.75 | |
| 4e3q_A | 473 | Pyruvate transaminase; aminotransferase, transfera | 98.64 | |
| 3k7y_A | 405 | Aspartate aminotransferase; aminotrans pyridoxal p | 98.47 | |
| 4h51_A | 420 | Aspartate aminotransferase; ssgcid, structural gen | 98.35 | |
| 4a0g_A | 831 | Adenosylmethionine-8-amino-7-oxononanoate aminotra | 98.2 |
| >1wyu_A Glycine dehydrogenase (decarboxylating) subunit 1; alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_A* 1wyv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-60 Score=559.47 Aligned_cols=421 Identities=34% Similarity=0.526 Sum_probs=382.0
Q ss_pred ccCCCCCHHHHHHHHHHhCCCCHHHhhhhcCCCcc-ccCCCCCCCCCCCCCHHHHHHHHHHHhcCCCc-cceecCCCCCC
Q 001989 100 RRHNSATPEDQAKMSELVGLDNLDSLIDATVPKSI-RIDSMKFSKFDEGLTESQMIEHMQKLASMNKV-YKSFIGMGYYN 177 (985)
Q Consensus 100 ~~~~~~~~~~~~~ml~~~g~~~~~~l~~~~ip~~~-~~~~~~lp~~~~~~se~e~~~~~~~l~~~n~~-~~~~lG~g~y~ 177 (985)
.+|||||++|+++||++||++|+||||++ ||+++ ++ +++|| +++||.+++++++.++++|.. +.+|+|.|+|+
T Consensus 1 ~~~~~~~~~~~~~ml~~~g~~~~~~~~~~-~p~~~~~~-~~~lp---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~ 75 (438)
T 1wyu_A 1 MDYTPHTEEEIREMLRRVGAASLEDLFAH-LPKEILSP-PIDLP---EPLPEWKVLEELRRLAAQNLPAHKAFLGGGVRS 75 (438)
T ss_dssp CCCCCCCHHHHHHHHHHHTCSSTGGGGTT-SCGGGSSC-CCCCC---CCCCHHHHHHHHHHHHHTSCCCTTCCCCSSCCC
T ss_pred CCCCCcCHHHHHHHHHHcCCCCHHHHHHh-CcHHHhcC-CCCCC---CCCCHHHHHHHHHHHHhcCcCccccccCCCccC
Confidence 48999999999999999999999999987 99999 77 88887 789999999999999999986 88899999999
Q ss_pred CCCcHHHHHHHHhCCccccccCCChhhHhhhHHHHHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCE
Q 001989 178 THVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKT 257 (985)
Q Consensus 178 ~~~p~~v~~~i~~~~~~~t~~~pyq~e~sqg~l~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~ 257 (985)
+..|+.+ ++++++++|++.|+||||+++||.++.+.++++++|+++|++++++++++|+|+++|+++++.++. +||+
T Consensus 76 ~~~p~~v-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~la~~~g~~~~~i~~~~g~taa~ea~~~a~~~~--~gd~ 152 (438)
T 1wyu_A 76 HHVPPVV-QALAARGEFLTAYTPYQPEVSQGVLQATFEYQTMIAELAGLEIANASMYDGATALAEGVLLALRET--GRMG 152 (438)
T ss_dssp CCCCHHH-HHHHTSHHHHHCCSCCSGGGCHHHHHHHHHHHHHHHHHHTSSEECSCBSSHHHHHHHHHHHHHHHH--TCCE
T ss_pred CcCcHHH-HHHHhcchhhhcCCCCcchhhhhHHHHHHHHHHHHHHHhCCCccceEEeCcHHHHHHHHHHHHhcC--CCCE
Confidence 9999999 478888899999999999999999999999999999999999888899999999999998886655 7899
Q ss_pred EEEcCCCChhHHHHHHHhhcCCCeEEEEeCchh----hhccCCCEeEEEEEcCCCCeeeccHHHHHHHHHhCCcEEEEEe
Q 001989 258 FIIASNCHPQTIDICITRADGFDIKVVVSDLKD----IDYKSGDVCGVLVQYPGTEGEVLDYGDFIKNAHANGVKVVMAT 333 (985)
Q Consensus 258 Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~~~----l~~l~~~t~~V~v~~pn~~G~v~di~~I~~~a~~~galliV~a 333 (985)
||+++..|+++..+|+.+++..|++++.++.++ +++++++|++|++++||++|.+.|+++|+++||++|++++|++
T Consensus 153 Viv~~~~h~s~~~~~~~~a~~~G~~v~~v~~~~~~~d~~~i~~~t~~v~i~~pn~tG~~~~l~~i~~la~~~g~~vivd~ 232 (438)
T 1wyu_A 153 VLVSQGVHPEYRAVLRAYLEAVGAKLLTLPLEGGRTPLPEVGEEVGAVVVQNPNFLGALEDLGPFAEAAHGAGALFVAVA 232 (438)
T ss_dssp EEEETTSCHHHHHHHHHHHHHTTCEEEEECCBTTBCCCCCCCTTEEEEEEESSCTTSBCCCHHHHHHHHHHTTCEEEEEC
T ss_pred EEEcCccCHhHHHHHHHHHHHCCCEEEEEcCcCCccCHHHhCCCeEEEEEECCCCCeEEecHHHHHHHHHHcCCEEEEEe
Confidence 999999999999999888777899999998643 2225678999999999999999999999999999999999877
Q ss_pred cCccccCCCCCCcccceEEEecCccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccc
Q 001989 334 DLLALTILKPPGELGADIVVGSAQRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRR 413 (985)
Q Consensus 334 ~~~~lg~l~~~~~~GaDi~v~s~k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irr 413 (985)
+..++|.+..++++|+|++++++|+|+.|+++|||++|++++++++++++|++++|++.|.+|.++|.+++|+|++++||
T Consensus 233 d~~a~g~~~~~~~~g~D~~~~s~kk~~~~~~~~Gp~~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~l~~~~~~~r~ 312 (438)
T 1wyu_A 233 DPLSLGVLKPPGAYGADIAVGDGQSLGLPMGFGGPHFGFLATKKAFVRQLPGRLVSETVDVEGRRGFILTLQAREQYIRR 312 (438)
T ss_dssp CTTGGGTBCCHHHHTCSEEEEECTTTTCCCGGGCSCCEEEEECGGGGGGCCSCCEEEEEBTTSCEEEEECCGGGSHHHHG
T ss_pred chhhccCcCCCccCCCCEEEECCcccCCCccCCCCCeeEEEEcHHHHHhCCCceeccccccCCCcceeeeccccccccch
Confidence 76678877777899999999999999999999999999999999999999999999988877878899999999999999
Q ss_pred cccCCCccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcC-CCeEEcCC-CCcceEEEecCC-HHHHHH
Q 001989 414 DKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKL-GTVEVQGL-PFFDTVKVKCAD-AHAIAS 490 (985)
Q Consensus 414 e~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~-g~~~~~~~-~~~~~~~~~~~~-~~~v~~ 490 (985)
+++|+|+|+++.+.++.+++|+.+++++|++++.++..+++++++++|+++ | +++..+ +++..+.+..+. ..++.+
T Consensus 313 ~~~t~~~~~~~~~~a~~aa~~l~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (438)
T 1wyu_A 313 AKAKSNITTNAQLTALMGAMYLAALGPEGLREVALKSVEMAHKLHALLLEVPG-VRPFTPKPFFNEFALALPKDPEAVRR 391 (438)
T ss_dssp GGSSCCCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTT-CEECSCSSBCSEEEEECSSCHHHHHH
T ss_pred hcccCCccchHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhcCCC-eEECCCCCeEEEEEEeCCCCHHHHHH
Confidence 999999999999999988888899999999999999999999999999998 6 998854 567777777654 889999
Q ss_pred HHHHcCcee--eee---cCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 491 AAYKIEMNL--RVV---DSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 491 ~L~~~GI~~--~~~---~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
+|.++||.+ +.. .++.+|+|+++++|++|+|+++++|++
T Consensus 392 ~L~~~gi~v~~~~~~~~~~~~lRis~~~~~t~edi~~~~~~l~~ 435 (438)
T 1wyu_A 392 ALAERGFHGATPVPREYGENLALFAATELHEEEDLLALREALKE 435 (438)
T ss_dssp HHHHTTCCCCEECCTTSCSSEEEEECCTTCCHHHHHHHHHHHHH
T ss_pred HHHHCCceeccccccccCCCeEEEEecccCCHHHHHHHHHHHHH
Confidence 999999988 322 257899999999999999999999863
|
| >1wyu_B Glycine dehydrogenase subunit 2 (P-protein); alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_B* 1wyv_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.9e-42 Score=402.93 Aligned_cols=405 Identities=39% Similarity=0.711 Sum_probs=320.9
Q ss_pred cCCCCccCCCCCCCCccccCCCCHHHHHHHHHHHhccccCcccccccccccccCCCccccccccccccccccCCCCchhh
Q 001989 547 AIPSGLTRESPYLTHPVFNKYHTEHELLRYIHLLQSKELSLCHSMIPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQ 626 (985)
Q Consensus 547 ~ip~~~~~~~~~~~~p~~~~~~se~e~~~~l~~l~~~~~~~~~~~~~lG~~t~~~~~~~~~~~~~~~~f~~~~p~~p~e~ 626 (985)
.||++++|++++ .+| ++||.|+++++.+++++|...+.++++||+|+++.++........+ +.+|+||++.+.
T Consensus 29 ~~p~~~~~~~~~-~lp----~~~e~~~~~~~~~l~~~~~~~~~~~~~lg~~~~~~~p~v~~~~~~~--~~~~~~~~~~~~ 101 (474)
T 1wyu_B 29 LIPKEHLREVPP-RLP----EVDELTLVRHYTGLSRRQVGVDTTFYPLGSCTMKYNPKLHEEAARL--FADLHPYQDPRT 101 (474)
T ss_dssp HSCGGGBCSSCC-CCC----CCCHHHHHHHHHHHHTTCCCTTTSCCCBTTTCCCCCCHHHHHHHHT--TSSCCTTSCGGG
T ss_pred cCCHHHhccCCC-CCC----CCCHHHHHHHHHHHHhCCCCcccCccccccccccCCHHHHHHHHHH--HHhcCCCCchhh
Confidence 499999999886 787 6999999999999999998877788999988888776542222222 666899998448
Q ss_pred hhhHHHHHHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCC-CCCCEEEEcCCCCcccHHHHHHCCcEEE
Q 001989 627 AQGYQEMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGD-HHRNVCIIPVSAHGTNPATAAMCGMKIV 705 (985)
Q Consensus 627 ~~G~~~~~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~-~~~~~IIv~~~~Hg~~~~~a~~~G~~vv 705 (985)
++|..++++++++++++++|++...+++++|++|+++++++++.+...+|. .++++||+++++|+++...++..|++++
T Consensus 102 ~~g~~~l~~~l~~~la~~~g~~~~~~~~~ggt~a~~~al~~~~~~~~~~Gd~~~r~~Vlv~~~~h~~~~~~~~~~G~~vv 181 (474)
T 1wyu_B 102 AQGALRLMWELGEYLKALTGMDAITLEPAAGAHGELTGILIIRAYHEDRGEGRTRRVVLVPDSAHGSNPATASMAGYQVR 181 (474)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHHHHHHHHHHHHTTCTTTCCEEEEETTSCTHHHHHHHHTTCEEE
T ss_pred ChHHHHHHHHHHHHHHHHHCCCceeecChHHHHHHHHHHHHHHHHHHhcCCccCCCEEEEeCCcChhhHHHHHHCCCEEE
Confidence 999999999999999999999876667789999998888888876544553 3456999999999999999999999999
Q ss_pred EEcCCCCCCCCHHHHHHHHHhcCCCEEEEEEEcCCCcccc-ccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCccCC
Q 001989 706 SVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPSTHGVY-EEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIGA 784 (985)
Q Consensus 706 ~v~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~pn~~G~i-~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~g~ 784 (985)
.+|++++|.+|+++|+++|+ ++|++|++++||++|.+ + |+++|+++||++|+++|+|++|..+..+..+++.+|+
T Consensus 182 ~v~~~~~~~~d~~~L~~~i~---~~t~~v~~~~pn~~G~~~~-~l~~i~~l~~~~g~~li~Dea~~~~~~g~~~~~~~g~ 257 (474)
T 1wyu_B 182 EIPSGPEGEVDLEALKRELG---PHVAALMLTNPNTLGLFER-RILEISRLCKEAGVQLYYDGANLNAIMGWARPGDMGF 257 (474)
T ss_dssp EECBCTTSSBCHHHHHHHCS---TTEEEEEECSSCTTSCCCT-THHHHHHHHHHHTCEEEEEGGGGGGTTTTCCHHHHTC
T ss_pred EecCCCCCCcCHHHHHHhhC---CCceEEEEECCCCCcccCC-CHHHHHHHHHHcCCEEEEeCchhhhhccCCCcccCCC
Confidence 99998889999999999997 78999999999999998 5 8999999999999999999999655443446777899
Q ss_pred cEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCC--CCCCCCCCCCCCCCcchhhhHHHHHHHHHHHH
Q 001989 785 DVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGI--PAPEKSQPLGTIAAAPWGSALILPISYTYIAM 862 (985)
Q Consensus 785 Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~--~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~ 862 (985)
|++++|+||+|++|+|+||||+|++++++++.+.+++.+++..+.. ....++....... +++++.+.+.++|+++..
T Consensus 258 di~~~s~~K~~~~p~g~gG~~~G~~~~~~~l~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~aa~~~l~~ 336 (474)
T 1wyu_B 258 DVVHLNLHKTFTVPHGGGGPGSGPVGVKAHLAPYLPVPLVERGEEGFYLDFDRPKSIGRVR-SFYGNFLALVRAWAYIRT 336 (474)
T ss_dssp SEEECCTTTTTCCCCTTSCCCCCCEEECGGGGGGCCSCEEEECSSCEEEECCCTTCCCCSS-STTSCHHHHHHHHHHHHH
T ss_pred cEEEEeCccccccCCCCCCCCeEEEEEcHHHHHhCCCCeeeccCCeeEecccCcccCcccc-cCcCcHHHHHHHHHHHHH
Confidence 9999999999999999999999999999988888874433210000 0000000000000 112244566778899998
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCCCC-
Q 001989 863 MGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWP- 940 (985)
Q Consensus 863 lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~~p- 940 (985)
+|.+++++..++..++++++.++|++ ++++.+. ...++.+++++. .+.+..+++++|.++||+++...+|
T Consensus 337 ~g~~~l~~~~~~~~~~~~~l~~~L~~~g~~~~~~---~~~~~~~~~~~~-----~~~~~~~l~~~L~~~Gi~~~~~~~~~ 408 (474)
T 1wyu_B 337 LGLEGLKKAAALAVLNARYLKELLKEKGYRVPYD---GPSMHEFVAQPP-----EGFRALDLAKGLLELGFHPPTVYFPL 408 (474)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTCBCSSC---SSCCSCEEEBCS-----TTCCHHHHHHHHHHTTCCCCEESCST
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCcEecCC---CCcceEEEEEcC-----CCCCHHHHHHHHHHCCcccccccccc
Confidence 99999999899999999999999987 4554322 234445666653 2567899999999999997655555
Q ss_pred -CCCEEEEeccCCCCHHHHHHHHccCChhHHHHh
Q 001989 941 -VPGTLMIEPTESESKSWTGIVMLSSPSEKKLHR 973 (985)
Q Consensus 941 -~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~ 973 (985)
..+.+||+++..+|++|||+ +++.|++++++
T Consensus 409 ~~~~~lRis~~~~~t~e~id~--~~~~L~~~~~~ 440 (474)
T 1wyu_B 409 IVKEALMVEPTETEAKETLEA--FAEAMGALLKK 440 (474)
T ss_dssp TSTTCEEECCCTTSCHHHHHH--HHHHHHHHHTS
T ss_pred ccCCEEEEEeecCCCHHHHHH--HHHHHHHHHHh
Confidence 35899999999999999999 78888887754
|
| >1wyu_B Glycine dehydrogenase subunit 2 (P-protein); alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_B* 1wyv_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=8e-37 Score=360.93 Aligned_cols=374 Identities=18% Similarity=0.195 Sum_probs=297.3
Q ss_pred cCCCcc-ccCCCCCCCCCCCCCHHHHHHHHHHHhcCCCc---cceecCCCCCCCCCcHHHHHHHHhCCccccccCCChhh
Q 001989 129 TVPKSI-RIDSMKFSKFDEGLTESQMIEHMQKLASMNKV---YKSFIGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAE 204 (985)
Q Consensus 129 ~ip~~~-~~~~~~lp~~~~~~se~e~~~~~~~l~~~n~~---~~~~lG~g~y~~~~p~~v~~~i~~~~~~~t~~~pyq~e 204 (985)
.||+++ ++.+++|| ++||.|+++++++|+++|.. ...|+| |+++|+.|.++. ++.++ ++.|+|||++
T Consensus 29 ~~p~~~~~~~~~~lp----~~~e~~~~~~~~~l~~~~~~~~~~~~~lg-~~~~~~~p~v~~-~~~~~---~~~~~~~~~~ 99 (474)
T 1wyu_B 29 LIPKEHLREVPPRLP----EVDELTLVRHYTGLSRRQVGVDTTFYPLG-SCTMKYNPKLHE-EAARL---FADLHPYQDP 99 (474)
T ss_dssp HSCGGGBCSSCCCCC----CCCHHHHHHHHHHHHTTCCCTTTSCCCBT-TTCCCCCCHHHH-HHHHT---TSSCCTTSCG
T ss_pred cCCHHHhccCCCCCC----CCCHHHHHHHHHHHHhCCCCcccCccccc-cccccCCHHHHH-HHHHH---HHhcCCCCch
Confidence 499999 88888996 79999999999999999975 345788 899999999885 67765 7889999998
Q ss_pred -HhhhHHHHHHHHHHHHHHhcCCCCcceeec-cchHHHHHHHHHHhh-hhcCCCC-----EEEEcCCCChhHHHHHHHhh
Q 001989 205 -IAQGRLESLLNFQTMIADLTGLPMSNASLL-DEGTAAAEAMAMCNN-IQKGKKK-----TFIIASNCHPQTIDICITRA 276 (985)
Q Consensus 205 -~sqg~l~~i~e~q~~ia~L~g~~~~~~sl~-~~~ta~~ea~~~a~~-~~~~~g~-----~Vlv~~~~H~s~~~~~~~~a 276 (985)
.+||.++.+.++++++++++|++. .+++ .+||.+..+++++.+ +..++|| +||+++..|+++...++
T Consensus 100 ~~~~g~~~l~~~l~~~la~~~g~~~--~~~~~~ggt~a~~~al~~~~~~~~~~Gd~~~r~~Vlv~~~~h~~~~~~~~--- 174 (474)
T 1wyu_B 100 RTAQGALRLMWELGEYLKALTGMDA--ITLEPAAGAHGELTGILIIRAYHEDRGEGRTRRVVLVPDSAHGSNPATAS--- 174 (474)
T ss_dssp GGCHHHHHHHHHHHHHHHHHHTCSE--EECCCSSHHHHHHHHHHHHHHHHHHTTCTTTCCEEEEETTSCTHHHHHHH---
T ss_pred hhChHHHHHHHHHHHHHHHHHCCCc--eeecChHHHHHHHHHHHHHHHHHHhcCCccCCCEEEEeCCcChhhHHHHH---
Confidence 899999999999999999999986 3444 666766665454432 1111444 99999999999998864
Q ss_pred cCCCeEEEEeCc--------hhhhc-cCCCEeEEEEEcCCCCeee-ccHHHHHHHHHhCCcEEEEEecCccccC--CCCC
Q 001989 277 DGFDIKVVVSDL--------KDIDY-KSGDVCGVLVQYPGTEGEV-LDYGDFIKNAHANGVKVVMATDLLALTI--LKPP 344 (985)
Q Consensus 277 ~~~gi~v~~v~~--------~~l~~-l~~~t~~V~v~~pn~~G~v-~di~~I~~~a~~~galliV~a~~~~lg~--l~~~ 344 (985)
..|++++.++. ++|++ ++++|++|++++||++|.+ +|+++|+++||++|+++++|. ..+.+. ..++
T Consensus 175 -~~G~~vv~v~~~~~~~~d~~~L~~~i~~~t~~v~~~~pn~~G~~~~~l~~i~~l~~~~g~~li~De-a~~~~~~g~~~~ 252 (474)
T 1wyu_B 175 -MAGYQVREIPSGPEGEVDLEALKRELGPHVAALMLTNPNTLGLFERRILEISRLCKEAGVQLYYDG-ANLNAIMGWARP 252 (474)
T ss_dssp -HTTCEEEEECBCTTSSBCHHHHHHHCSTTEEEEEECSSCTTSCCCTTHHHHHHHHHHHTCEEEEEG-GGGGGTTTTCCH
T ss_pred -HCCCEEEEecCCCCCCcCHHHHHHhhCCCceEEEEECCCCCcccCCCHHHHHHHHHHcCCEEEEeC-chhhhhccCCCc
Confidence 35888888765 35666 7889999999999999998 799999999999999999952 333222 2356
Q ss_pred CcccceEEEecC-ccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccch
Q 001989 345 GELGADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTA 423 (985)
Q Consensus 345 ~~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~ 423 (985)
+++|+|++++++ |+|++|+++|||++|+++++++++++++++++|+ + | ..|.+++ +++++++|.+.+ |.
T Consensus 253 ~~~g~di~~~s~~K~~~~p~g~gG~~~G~~~~~~~l~~~l~~~~~~~--~--g-~~~~~~~-~~~~~~~~~~~~---~~- 322 (474)
T 1wyu_B 253 GDMGFDVVHLNLHKTFTVPHGGGGPGSGPVGVKAHLAPYLPVPLVER--G--E-EGFYLDF-DRPKSIGRVRSF---YG- 322 (474)
T ss_dssp HHHTCSEEECCTTTTTCCCCTTSCCCCCCEEECGGGGGGCCSCEEEE--C--S-SCEEEEC-CCTTCCCCSSST---TS-
T ss_pred ccCCCcEEEEeCccccccCCCCCCCCeEEEEEcHHHHHhCCCCeeec--c--C-CeeEecc-cCcccCcccccC---cC-
Confidence 788999999998 8899999999999999999999999998888774 1 3 3477776 578898887543 21
Q ss_pred hHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEc-CCCCcceEEEecC--C-HHHHHHHHHHcCcee
Q 001989 424 QALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQ-GLPFFDTVKVKCA--D-AHAIASAAYKIEMNL 499 (985)
Q Consensus 424 ~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~-~~~~~~~~~~~~~--~-~~~v~~~L~~~GI~~ 499 (985)
+.+....+..++..+|.+|++++.++..++++|+++.|+++| +++. +.+.++++.+.++ . ..++.++|.++||.+
T Consensus 323 ~~~~~~aa~~~l~~~g~~~l~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~Gi~~ 401 (474)
T 1wyu_B 323 NFLALVRAWAYIRTLGLEGLKKAAALAVLNARYLKELLKEKG-YRVPYDGPSMHEFVAQPPEGFRALDLAKGLLELGFHP 401 (474)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CBCSSCSSCCSCEEEBCSTTCCHHHHHHHHHHTTCCC
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-cEecCCCCcceEEEEEcCCCCCHHHHHHHHHHCCccc
Confidence 233333344466778889999999999999999999999986 8874 3345555666653 2 889999999999976
Q ss_pred eee-----cCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 500 RVV-----DSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 500 ~~~-----~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
... ..+.+|++++..+|++|+|+++++|..
T Consensus 402 ~~~~~~~~~~~~lRis~~~~~t~e~id~~~~~L~~ 436 (474)
T 1wyu_B 402 PTVYFPLIVKEALMVEPTETEAKETLEAFAEAMGA 436 (474)
T ss_dssp CEESCSTTSTTCEEECCCTTSCHHHHHHHHHHHHH
T ss_pred cccccccccCCEEEEEeecCCCHHHHHHHHHHHHH
Confidence 432 247899999999999999999999974
|
| >1wyu_A Glycine dehydrogenase (decarboxylating) subunit 1; alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_A* 1wyv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-36 Score=355.39 Aligned_cols=406 Identities=19% Similarity=0.289 Sum_probs=303.4
Q ss_pred cCCCHHHHHHHHHHHhCCCCCCCCHHhhhhhhhccCCCCccCCCCCCCCccccCCCCHHHHHHHHHHHhccccCcccccc
Q 001989 513 ETTTLEDVDKLFIVFAGGKSVPFTAASLAEEVETAIPSGLTRESPYLTHPVFNKYHTEHELLRYIHLLQSKELSLCHSMI 592 (985)
Q Consensus 513 ~~~t~edId~li~aL~~~~~~~~~~~~l~~~~~~~ip~~~~~~~~~~~~p~~~~~~se~e~~~~l~~l~~~~~~~~~~~~ 592 (985)
.-+|++|++++++.++.+ |+|+|++ +||+++|++ ++ .+| +++||.++++++..+++++.. +..+
T Consensus 4 ~~~~~~~~~~ml~~~g~~-----~~~~~~~----~~p~~~~~~-~~-~lp---~~~~~~~~~~~~~~l~~~~~~--~~~~ 67 (438)
T 1wyu_A 4 TPHTEEEIREMLRRVGAA-----SLEDLFA----HLPKEILSP-PI-DLP---EPLPEWKVLEELRRLAAQNLP--AHKA 67 (438)
T ss_dssp CCCCHHHHHHHHHHHTCS-----STGGGGT----TSCGGGSSC-CC-CCC---CCCCHHHHHHHHHHHHHTSCC--CTTC
T ss_pred CCcCHHHHHHHHHHcCCC-----CHHHHHH----hCcHHHhcC-CC-CCC---CCCCHHHHHHHHHHHHhcCcC--cccc
Confidence 357899999999999988 8999985 599999988 64 777 789999999999999998753 1134
Q ss_pred cccccccC--CCccccccccccccc-cccCCCCchhhhhhHHHHHHHHHHHHHHHhCCCccceec-CcHHHHHHHHHHHH
Q 001989 593 PLGSCTMK--LNATTEMMPVTWPSF-ANIHPFAPADQAQGYQEMFNNLGEWLCTITGFDSFSLQP-NAGAAGEYAGLMVI 668 (985)
Q Consensus 593 ~lG~~t~~--~~~~~~~~~~~~~~f-~~~~p~~p~e~~~G~~~~~~e~~~~la~l~G~~~~~~~~-~sGa~a~~a~l~ai 668 (985)
++|.+.+. .+... ........| .+|+||+| +.++|..++++++++++++++|++..++.. .+++.+.+++++++
T Consensus 68 ~~~~g~~~~~~p~~v-~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~la~~~g~~~~~i~~~~g~taa~ea~~~a~ 145 (438)
T 1wyu_A 68 FLGGGVRSHHVPPVV-QALAARGEFLTAYTPYQP-EVSQGVLQATFEYQTMIAELAGLEIANASMYDGATALAEGVLLAL 145 (438)
T ss_dssp CCCSSCCCCCCCHHH-HHHHTSHHHHHCCSCCSG-GGCHHHHHHHHHHHHHHHHHHTSSEECSCBSSHHHHHHHHHHHHH
T ss_pred ccCCCccCCcCcHHH-HHHHhcchhhhcCCCCcc-hhhhhHHHHHHHHHHHHHHHhCCCccceEEeCcHHHHHHHHHHHH
Confidence 56654322 22222 111223455 45889998 899999999999999999999998764333 33333445666655
Q ss_pred HHHHHhcCCCCCCEEEEcCCCCcccHHH----HHHCCcEEEEEcCCCCCCCCHHHHHHHHHhcCCCEEEEEEEcCCCccc
Q 001989 669 RAYHKARGDHHRNVCIIPVSAHGTNPAT----AAMCGMKIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPSTHGV 744 (985)
Q Consensus 669 r~~~~~~g~~~~~~IIv~~~~Hg~~~~~----a~~~G~~vv~v~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~pn~~G~ 744 (985)
+. .++++||+++..|+++... ++..|++++.+|. ++|.+|+++ |+ ++|++|++++||++|.
T Consensus 146 ~~-------~~gd~Viv~~~~h~s~~~~~~~~a~~~G~~v~~v~~-~~~~~d~~~----i~---~~t~~v~i~~pn~tG~ 210 (438)
T 1wyu_A 146 RE-------TGRMGVLVSQGVHPEYRAVLRAYLEAVGAKLLTLPL-EGGRTPLPE----VG---EEVGAVVVQNPNFLGA 210 (438)
T ss_dssp HH-------HTCCEEEEETTSCHHHHHHHHHHHHHTTCEEEEECC-BTTBCCCCC----CC---TTEEEEEEESSCTTSB
T ss_pred hc-------CCCCEEEEcCccCHhHHHHHHHHHHHCCCEEEEEcC-cCCccCHHH----hC---CCeEEEEEECCCCCeE
Confidence 32 2578999999988776543 3568999999997 567888776 55 7899999999999999
Q ss_pred cccCHHHHHHHHHHcCCEEEEEcc-ccccccCCCCCCccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCc
Q 001989 745 YEEGIDEICKIIHDNGGQVYMDGA-NMNAQVGLTSPGYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHP 823 (985)
Q Consensus 745 i~~di~eI~~la~~~galliVD~a-~~~~~~~l~~pg~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~ 823 (985)
+. |+++|+++||++|+++|+|.. + +.+.+..++.+|+|++++| +|.|++|+++||||+|++++++++.+.++++.
T Consensus 211 ~~-~l~~i~~la~~~g~~vivd~d~~--a~g~~~~~~~~g~D~~~~s-~kk~~~~~~~~Gp~~G~l~~~~~~~~~l~~~~ 286 (438)
T 1wyu_A 211 LE-DLGPFAEAAHGAGALFVAVADPL--SLGVLKPPGAYGADIAVGD-GQSLGLPMGFGGPHFGFLATKKAFVRQLPGRL 286 (438)
T ss_dssp CC-CHHHHHHHHHHTTCEEEEECCTT--GGGTBCCHHHHTCSEEEEE-CTTTTCCCGGGCSCCEEEEECGGGGGGCCSCC
T ss_pred Ee-cHHHHHHHHHHcCCEEEEEechh--hccCcCCCccCCCCEEEEC-CcccCCCccCCCCCeeEEEEcHHHHHhCCCce
Confidence 98 999999999999999998754 3 2344556678899999999 56699999999999999999999888888766
Q ss_pred cccCCCC-C------------CC-CCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc-
Q 001989 824 VVSTGGI-P------------AP-EKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK- 888 (985)
Q Consensus 824 ~g~~~~~-~------------~~-~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~- 888 (985)
.|.+.+. + .+ +++++++++++. +...+..+++++..++.+|++++.++..++++++.++|++
T Consensus 287 ~g~~~~~~~~~~~~~~l~~~~~~~r~~~~t~~~~~~---~~~~a~~aa~~l~~~~~~g~~~~~~~~~~~~~~l~~~L~~~ 363 (438)
T 1wyu_A 287 VSETVDVEGRRGFILTLQAREQYIRRAKAKSNITTN---AQLTALMGAMYLAALGPEGLREVALKSVEMAHKLHALLLEV 363 (438)
T ss_dssp EEEEEBTTSCEEEEECCGGGSHHHHGGGSSCCCCSC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred eccccccCCCcceeeeccccccccchhcccCCccch---HHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 5542111 0 00 134567777653 2333444556788889999999999999999999999986
Q ss_pred -cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCcc--CC-CCCCCCCEEEEeccCCCCHHHHHHHHcc
Q 001989 889 -HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHG--PT-MSWPVPGTLMIEPTESESKSWTGIVMLS 964 (985)
Q Consensus 889 -g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~--~~-~~~p~~~~lris~t~~~t~eeId~~~~~ 964 (985)
++++. ++ .+.++.+.+.++ .+..+++++|.++||.+ .. ..++ ++.+|||+++++|++|||+ ++
T Consensus 364 ~g~~~~--~~-~~~~~~~~~~~~-------~~~~~~~~~L~~~gi~v~~~~~~~~~-~~~lRis~~~~~t~edi~~--~~ 430 (438)
T 1wyu_A 364 PGVRPF--TP-KPFFNEFALALP-------KDPEAVRRALAERGFHGATPVPREYG-ENLALFAATELHEEEDLLA--LR 430 (438)
T ss_dssp TTCEEC--SC-SSBCSEEEEECS-------SCHHHHHHHHHHTTCCCCEECCTTSC-SSEEEEECCTTCCHHHHHH--HH
T ss_pred CCeEEC--CC-CCeEEEEEEeCC-------CCHHHHHHHHHHCCceeccccccccC-CCeEEEEecccCCHHHHHH--HH
Confidence 44443 22 234554555532 46889999999999998 22 2233 5899999999999999999 66
Q ss_pred CChhHHH
Q 001989 965 SPSEKKL 971 (985)
Q Consensus 965 ~~l~~~~ 971 (985)
+.|++++
T Consensus 431 ~~l~~~l 437 (438)
T 1wyu_A 431 EALKEVL 437 (438)
T ss_dssp HHHHHHC
T ss_pred HHHHHHh
Confidence 7776653
|
| >3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.1e-29 Score=299.26 Aligned_cols=382 Identities=15% Similarity=0.142 Sum_probs=271.7
Q ss_pred CCccccCCCCHHHHHHHHHHHhcc--ccCcccccccccc-cccCCCccccccccccccccccCCCCchhhhhhHHHHHHH
Q 001989 560 THPVFNKYHTEHELLRYIHLLQSK--ELSLCHSMIPLGS-CTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNN 636 (985)
Q Consensus 560 ~~p~~~~~~se~e~~~~l~~l~~~--~~~~~~~~~~lG~-~t~~~~~~~~~~~~~~~~f~~~~p~~p~e~~~G~~~~~~e 636 (985)
.+| ..++++.+++++++++... +..+.+ ..++|. ++.. +...+.....+..+.+.+++++ +.++|..++.++
T Consensus 37 ~lp--~~g~~~~~i~~~l~~~~~~~~~~~~~~-~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~ 111 (497)
T 3mc6_A 37 QLP--SNGIPQDDVIEELNKLNDLIPHTQWKE-GKVSGAVYHGG-DDLIHLQTIAYEKYCVANQLHP-DVFPAVRKMESE 111 (497)
T ss_dssp SCC--SSCCCHHHHHHHHHHHHHSSCCCCGGG-TCBSSSCSCCC-HHHHHHHHHHHHHTSSCBTTCT-TTCHHHHHHHHH
T ss_pred CCC--CCCCCHHHHHHHHHHHhhhcCCCCCCC-CCEeeecCCCc-hHHHHHHHHHHHHHhhcCCCCc-ccChHHHHHHHH
Confidence 567 6899999999999999874 444433 334453 1111 1112222222334444566666 778999999999
Q ss_pred HHHHHHHHhCCC--c-cceecCcHHHHHHHHHHHHHHHHHh-cCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcCCC-
Q 001989 637 LGEWLCTITGFD--S-FSLQPNAGAAGEYAGLMVIRAYHKA-RGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDA- 711 (985)
Q Consensus 637 ~~~~la~l~G~~--~-~~~~~~sGa~a~~a~l~air~~~~~-~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~d~- 711 (985)
+++++++++|++ . ..+++++|+++++.++++++.+... +|. ++++|+++...|.++...++..|++++.||+++
T Consensus 112 ~~~~la~~~g~~~~~~~~~~~~ggt~a~~~a~~a~~~~~~~~~g~-~~~~Vi~~~~~h~~~~~~~~~~G~~~~~v~~~~~ 190 (497)
T 3mc6_A 112 VVSMVLRMFNAPSDTGCGTTTSGGTESLLLACLSAKMYALHHRGI-TEPEIIAPVTAHAGFDKAAYYFGMKLRHVELDPT 190 (497)
T ss_dssp HHHHHHHHTTCCTTTCCEEEESSHHHHHHHHHHHHHHHHHHHSCC-SSCEEEEETTSCHHHHHHHHHSCCEEEEECBCTT
T ss_pred HHHHHHHHhCCCCCCCeEEEcCcHHHHHHHHHHHHHHHHHhcCCC-CCceEEEeCCccHHHHHHHHHcCCeEEEEecCcc
Confidence 999999999998 3 3466788888887777777654322 232 357999999999988888999999999999987
Q ss_pred CCCCCHHHHHHHHHhcCCCEEEEEEEcCC-CccccccCHHHHHHHHHHcCCEEEEEccccccc---------cCC--CCC
Q 001989 712 KGNINIEELRKAAEANRDNLSTLMVTYPS-THGVYEEGIDEICKIIHDNGGQVYMDGANMNAQ---------VGL--TSP 779 (985)
Q Consensus 712 ~g~iD~e~L~~~i~~~~~~t~~Vvv~~pn-~~G~i~~di~eI~~la~~~galliVD~a~~~~~---------~~l--~~p 779 (985)
++.+|+++|+++|+ +++++|++++|+ ++|.+. |+++|+++|+++|+++|||+++.... +.+ ...
T Consensus 191 ~~~~d~~~l~~~i~---~~~~~v~~~~p~nptG~~~-~l~~i~~la~~~g~~livD~a~~~~~~~f~~~~~~~~~~~~~~ 266 (497)
T 3mc6_A 191 TYQVDLGKVKKFIN---KNTVLLVGSAPNFPHGIAD-DIEGLGKIAQKYKLPLHVDSCLGSFIVSFMEKAGYKNLPLLDF 266 (497)
T ss_dssp TCSBCTTTTGGGCC---SSEEEEEEETTCTTTCCCC-SCTTTTTHHHHTTCCEEEETTTTHHHHGGGTTTTCCSCCCCST
T ss_pred cCcCCHHHHHHHHh---hCCEEEEEECCCCCCCcCC-CHHHHHHHHHHhCCEEEEECcchhhhhhhhhhhcccCCccccc
Confidence 78999999999997 789999999996 699998 89999999999999999999985211 111 123
Q ss_pred CccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCcc-ccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHH
Q 001989 780 GYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPV-VSTGGIPAPEKSQPLGTIAAAPWGSALILPISYT 858 (985)
Q Consensus 780 g~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~-g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a 858 (985)
...|+|++++++||++. ||+++|+++++++.......... .+.. ......++.++.. ....++.|+
T Consensus 267 ~~~g~d~~~~s~~K~l~-----~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~g~~~--~~~~~a~~a 333 (497)
T 3mc6_A 267 RVPGVTSISCDTHKYGF-----APKGSSVIMYRNSDLRMHQYYVNPAWTG------GLYGSPTLAGSRP--GAIVVGCWA 333 (497)
T ss_dssp TSTTCCEEEEETTTTTC-----CCSSCEEEECSSHHHHTTTSCCBTTCTT------SCBCCSSSCSSCB--HHHHHHHHH
T ss_pred cCCCCcEEEECchhhcC-----CCCCceeEEecCHHHHhhhhcccccccC------CCcCCcCcccCCc--chhHHHHHH
Confidence 45689999999999873 55688999988654332211110 0000 0001112222221 233455688
Q ss_pred HHHHhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCC
Q 001989 859 YIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTM 937 (985)
Q Consensus 859 ~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~ 937 (985)
++..++.+|+++..++..+++++++++|++ ..++...++ +....+.+... +.+..++.++|.++||.+...
T Consensus 334 al~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~~g~~~~~~--~~~~~v~~~~~------~~~~~~l~~~L~~~Gi~v~~~ 405 (497)
T 3mc6_A 334 TMVNMGENGYIESCQEIVGAAMKFKKYIQENIPDLDIMGN--PRYSVISFSSK------TLNIHELSDRLSKKGWHFNAL 405 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCEECSC--CCSSEEEEECT------TTTHHHHHHHHHTTTCBCEEC
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEecC--CCeeEEEEeCC------CCCHHHHHHHHHhCCEEEecC
Confidence 889999999999999999999999999987 223322221 12223445443 567899999999999988654
Q ss_pred CCCCCCEEEEeccCCCCHHHHHHHHccCChhHHHHhhccC
Q 001989 938 SWPVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRLKMG 977 (985)
Q Consensus 938 ~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~~~~ 977 (985)
..| +.+|++++ .+|++|+|+ +++.|+++++.++..
T Consensus 406 ~~~--~~~ri~~~-~~t~e~i~~--~~~~L~~~l~~~~~~ 440 (497)
T 3mc6_A 406 QKP--VALHMAFT-RLSAHVVDE--ICDILRTTVQELKSE 440 (497)
T ss_dssp CSS--CCEEEECC-TTTTCTHHH--HHHHHHHHHHHHTCC
T ss_pred CCC--CeEEEEEe-CCCHHHHHH--HHHHHHHHHHHHHhC
Confidence 444 67899999 789999999 889999999887654
|
| >3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=3e-27 Score=280.59 Aligned_cols=389 Identities=13% Similarity=0.157 Sum_probs=256.0
Q ss_pred CCCCCHHHHHHHHHHhCCCCHHHhhhhcCCCccccCCCCCCCCCCCCCHHHHHHHHHHHhcC--CCccc--eecCCCCCC
Q 001989 102 HNSATPEDQAKMSELVGLDNLDSLIDATVPKSIRIDSMKFSKFDEGLTESQMIEHMQKLASM--NKVYK--SFIGMGYYN 177 (985)
Q Consensus 102 ~~~~~~~~~~~ml~~~g~~~~~~l~~~~ip~~~~~~~~~lp~~~~~~se~e~~~~~~~l~~~--n~~~~--~~lG~g~y~ 177 (985)
-||++++++++||+.++.+..++|+.. +|...+ ..+|| ++++++.+++++++++... +..+. +|.|.-+.+
T Consensus 2 ~~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~lp--~~g~~~~~i~~~l~~~~~~~~~~~~~~~~~~g~~~~~ 76 (497)
T 3mc6_A 2 GSPFLRGTVEKEVTKVKQSIEDELIRS-DSQLMN--FPQLP--SNGIPQDDVIEELNKLNDLIPHTQWKEGKVSGAVYHG 76 (497)
T ss_dssp ------------------------------CCCC--CSSCC--SSCCCHHHHHHHHHHHHHSSCCCCGGGTCBSSSCSCC
T ss_pred CCCchHHHHHHHHHHHHHHHHHhhcCC-cccccc--ccCCC--CCCCCHHHHHHHHHHHhhhcCCCCCCCCCEeeecCCC
Confidence 378999999999999999999999975 665442 24677 6899999999999999875 33332 455533322
Q ss_pred CCCcHHHHHHHHhCCccccccCCChhhHhhhHHHHHHHHHHHHHHhcCCC--CcceeeccchHHHHHHHHHHhhh-h-cC
Q 001989 178 THVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLP--MSNASLLDEGTAAAEAMAMCNNI-Q-KG 253 (985)
Q Consensus 178 ~~~p~~v~~~i~~~~~~~t~~~pyq~e~sqg~l~~i~e~q~~ia~L~g~~--~~~~sl~~~~ta~~ea~~~a~~~-~-~~ 253 (985)
. |... +.+.+.-..+..+++++++.++|..+...++++++++++|++ ..++.+++|||.++..++.+.+- . ++
T Consensus 77 ~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~la~~~g~~~~~~~~~~~~ggt~a~~~a~~a~~~~~~~~ 153 (497)
T 3mc6_A 77 G--DDLI-HLQTIAYEKYCVANQLHPDVFPAVRKMESEVVSMVLRMFNAPSDTGCGTTTSGGTESLLLACLSAKMYALHH 153 (497)
T ss_dssp C--HHHH-HHHHHHHHHTSSCBTTCTTTCHHHHHHHHHHHHHHHHHTTCCTTTCCEEEESSHHHHHHHHHHHHHHHHHHH
T ss_pred c--hHHH-HHHHHHHHHHhhcCCCCcccChHHHHHHHHHHHHHHHHhCCCCCCCeEEEcCcHHHHHHHHHHHHHHHHHhc
Confidence 1 2222 222222122444578888899999999999999999999998 66899999999888777765431 1 01
Q ss_pred C---CCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc---------hhhhc-cCCCEeEEEEEcC-CCCeeeccHHHHH
Q 001989 254 K---KKTFIIASNCHPQTIDICITRADGFDIKVVVSDL---------KDIDY-KSGDVCGVLVQYP-GTEGEVLDYGDFI 319 (985)
Q Consensus 254 ~---g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~---------~~l~~-l~~~t~~V~v~~p-n~~G~v~di~~I~ 319 (985)
+ +++|+++...|+++...++. .|++++.++. ++|++ +++++++|++++| |++|.+.|+++|+
T Consensus 154 ~g~~~~~Vi~~~~~h~~~~~~~~~----~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~v~~~~p~nptG~~~~l~~i~ 229 (497)
T 3mc6_A 154 RGITEPEIIAPVTAHAGFDKAAYY----FGMKLRHVELDPTTYQVDLGKVKKFINKNTVLLVGSAPNFPHGIADDIEGLG 229 (497)
T ss_dssp SCCSSCEEEEETTSCHHHHHHHHH----SCCEEEEECBCTTTCSBCTTTTGGGCCSSEEEEEEETTCTTTCCCCSCTTTT
T ss_pred CCCCCceEEEeCCccHHHHHHHHH----cCCeEEEEecCcccCcCCHHHHHHHHhhCCEEEEEECCCCCCCcCCCHHHHH
Confidence 2 38999999999999988764 4888888764 34666 7889999999999 5899999999999
Q ss_pred HHHHhCCcEEEEEecCccc-----------cCC--CCCCcccceEEEecCccccccCCCCCCcEEEEEEchhhHhcCCCc
Q 001989 320 KNAHANGVKVVMATDLLAL-----------TIL--KPPGELGADIVVGSAQRFGVPMGYGGPHAAFLATSQEYKRMMPGR 386 (985)
Q Consensus 320 ~~a~~~galliV~a~~~~l-----------g~l--~~~~~~GaDi~v~s~k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~ 386 (985)
++||++|++++||. .++- +.+ .....+|+|++++++++++ +||+++|+++++++.++.....
T Consensus 230 ~la~~~g~~livD~-a~~~~~~~f~~~~~~~~~~~~~~~~~g~d~~~~s~~K~l----~~~~~~g~~~~~~~~~~~~~~~ 304 (497)
T 3mc6_A 230 KIAQKYKLPLHVDS-CLGSFIVSFMEKAGYKNLPLLDFRVPGVTSISCDTHKYG----FAPKGSSVIMYRNSDLRMHQYY 304 (497)
T ss_dssp THHHHTTCCEEEET-TTTHHHHGGGTTTTCCSCCCCSTTSTTCCEEEEETTTTT----CCCSSCEEEECSSHHHHTTTSC
T ss_pred HHHHHhCCEEEEEC-cchhhhhhhhhhhcccCCccccccCCCCcEEEECchhhc----CCCCCceeEEecCHHHHhhhhc
Confidence 99999999999953 3321 111 2235679999999995542 3556789999988766554221
Q ss_pred eeeeeecCCCCcceeeecccccccccccccCCCccc-hhH--HHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhc
Q 001989 387 IVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICT-AQA--LLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKK 463 (985)
Q Consensus 387 ~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t-~~~--l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~ 463 (985)
+.. +..+.. .++.++++ ... ..+..++ +..++.+|++++.++..++++++++.|++
T Consensus 305 ~~~---~~~~~~----------------~~~~~~~g~~~~~~~~a~~aa--l~~l~~~~~~~~~~~~~~~~~~l~~~L~~ 363 (497)
T 3mc6_A 305 VNP---AWTGGL----------------YGSPTLAGSRPGAIVVGCWAT--MVNMGENGYIESCQEIVGAAMKFKKYIQE 363 (497)
T ss_dssp CBT---TCTTSC----------------BCCSSSCSSCBHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccc---cccCCC----------------cCCcCcccCCcchhHHHHHHH--HHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 100 000000 01122211 111 2223333 46778899999999999999999999999
Q ss_pred -CCCeEEcCCCCcceEEEecCC--HHHHHHHHHHcCceeeeec-CCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 464 -LGTVEVQGLPFFDTVKVKCAD--AHAIASAAYKIEMNLRVVD-SNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 464 -~g~~~~~~~~~~~~~~~~~~~--~~~v~~~L~~~GI~~~~~~-~~~lris~t~~~t~edId~li~aL~~ 529 (985)
+.|++++.++....+.|..++ +.++.++|.++||.++... +..+|++++ .+|++|+|+++++|.+
T Consensus 364 ~~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~L~~~Gi~v~~~~~~~~~ri~~~-~~t~e~i~~~~~~L~~ 432 (497)
T 3mc6_A 364 NIPDLDIMGNPRYSVISFSSKTLNIHELSDRLSKKGWHFNALQKPVALHMAFT-RLSAHVVDEICDILRT 432 (497)
T ss_dssp SCTTCEECSCCCSSEEEEECTTTTHHHHHHHHHTTTCBCEECCSSCCEEEECC-TTTTCTHHHHHHHHHH
T ss_pred cCCCEEEecCCCeeEEEEeCCCCCHHHHHHHHHhCCEEEecCCCCCeEEEEEe-CCCHHHHHHHHHHHHH
Confidence 544998866666677787665 8899999999999887543 567999999 7899999999999984
|
| >2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14, autoinhibition, substituted aldamine, lyase; HET: PLP; 1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A* 1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.4e-26 Score=271.73 Aligned_cols=384 Identities=12% Similarity=0.024 Sum_probs=258.4
Q ss_pred CCccccCCCCHHHHHHHHHHHhccccCc-ccccccccccccCCCccccccccccccccccCCCCchhhhhhHHHHHHHHH
Q 001989 560 THPVFNKYHTEHELLRYIHLLQSKELSL-CHSMIPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLG 638 (985)
Q Consensus 560 ~~p~~~~~~se~e~~~~l~~l~~~~~~~-~~~~~~lG~~t~~~~~~~~~~~~~~~~f~~~~p~~p~e~~~G~~~~~~e~~ 638 (985)
.+| .+|.++.++++.+.++...+... .....+++ +...+...+... ...+-+++++ +.+++..++.++++
T Consensus 17 ~lp--~~g~~~~~v~~~~~~~~~~~~~~~~~~~~f~~--~~~~~~v~e~~~----~a~~~~~~~~-~~~~~~~~l~~~~~ 87 (452)
T 2dgk_A 17 RFP--LHEMRDDVAFQIINDELYLDGNARQNLATFCQ--TWDDENVHKLMD----LSINKNWIDK-EEYPQSAAIDLRCV 87 (452)
T ss_dssp SCC--CSCCCHHHHHHHHHHHGGGSCCCTTBCSCCSC--CCCCHHHHHHHH----HTTTCBTTCT-TTCHHHHHHHHHHH
T ss_pred CCC--CCCCCHHHHHHHHHHHhcCCCCCccCCCCeeC--CCchHHHHHHHH----HHhccCCCCh-hhChhHHHHHHHHH
Confidence 456 58899999999999998655331 11223333 111111112211 1111123333 45689999999999
Q ss_pred HHHHHHhCCCcc------ceecCcHHHHHHHHHHHHHHHHH----hcCCC-CCCEEEEcCCCCcccHHHHHHCCcEEEEE
Q 001989 639 EWLCTITGFDSF------SLQPNAGAAGEYAGLMVIRAYHK----ARGDH-HRNVCIIPVSAHGTNPATAAMCGMKIVSV 707 (985)
Q Consensus 639 ~~la~l~G~~~~------~~~~~sGa~a~~a~l~air~~~~----~~g~~-~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v 707 (985)
+++++++|++.. .++.++|++|+..++++++.... ..|.. .+++||+++ .|.++...++..|++++.|
T Consensus 88 ~~la~l~g~~~~~~~~~~~~~t~ggtea~~~al~a~~~~~~~~~~~~G~~~~~~~vi~~~-~h~~~~~~~~~~G~~v~~v 166 (452)
T 2dgk_A 88 NMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWRWRKRMEAAGKPTDKPNLVCGP-VQICWHKFARYWDVELREI 166 (452)
T ss_dssp HHHHHHTTCCCCTTSCCEEEEESSHHHHHHHHHHHHHHHHHHHHHHTTCCCSCCEEEESS-CCHHHHHHHHHTTCEEEEC
T ss_pred HHHHHHhCCCcccccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEECC-CcHHHHHHHHHcCceEEEE
Confidence 999999999864 35667788777666666553211 12311 246899999 9988888889999999999
Q ss_pred cCCC-CCCCCHHHHHHHHHhcCCCEEEEEEEcCC-CccccccCHHHHHHHHHHc------CCEEEEEccccccccCC-CC
Q 001989 708 GTDA-KGNINIEELRKAAEANRDNLSTLMVTYPS-THGVYEEGIDEICKIIHDN------GGQVYMDGANMNAQVGL-TS 778 (985)
Q Consensus 708 ~~d~-~g~iD~e~L~~~i~~~~~~t~~Vvv~~pn-~~G~i~~di~eI~~la~~~------galliVD~a~~~~~~~l-~~ 778 (985)
|+++ ++.+|+++|+++|+ ++|++|++++|+ ++|.++ |+++|+++|+++ |+++|||+++......+ ..
T Consensus 167 ~~~~~~~~~d~~~l~~~i~---~~t~~v~~~~~~n~tG~~~-~l~~I~~ia~~~~~~~~~~~~l~vD~a~~~~~~~~~~~ 242 (452)
T 2dgk_A 167 PMRPGQLFMDPKRMIEACD---ENTIGVVPTFGVTYTGNYE-FPQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFVAP 242 (452)
T ss_dssp CCBTTBCSCCHHHHHHHCC---TTEEEEECBBSCTTTCBBC-CHHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCT
T ss_pred ecCCCCCeECHHHHHHHHh---hCCEEEEEEcCCcCCcccC-CHHHHHHHHHHHhhccCCCCcEEEEcccHHHHHHhhCc
Confidence 9987 69999999999998 789999999995 699998 999999999995 99999999985321100 11
Q ss_pred --C---CccCCcEEEeCCcccccccCCCCCCceEEEEEccc-cc-CcC---CCCccccCCCCCCCCCCCCCCCCCCcchh
Q 001989 779 --P---GYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKH-LA-PFL---PSHPVVSTGGIPAPEKSQPLGTIAAAPWG 848 (985)
Q Consensus 779 --p---g~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~-l~-~~l---p~~~~g~~~~~~~~~~~~~~~~i~s~~~g 848 (985)
+ ...++|++++++||++. +|+++|++++++. +. +.+ +.+..+.. ....+..+..+
T Consensus 243 ~~~~~~~~~~~d~~~~~~hK~~~-----~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~r~~ 307 (452)
T 2dgk_A 243 DIVWDFRLPRVKSISASGHKFGL-----APLGCGWVIWRDEEALPQELVFNVDYLGGQI----------GTFAINFSRPA 307 (452)
T ss_dssp TCCCSTTSTTEEEEEEETTTTTC-----CCSSCEEEEESSGGGSCGGGCEEECCTTCCE----------EECCSCCSCBC
T ss_pred cchhhcCCCCCcEEEECcccccC-----CCCCeEEEEEcCHHHHHHHhccCccccCCCC----------CCcccCCCChh
Confidence 1 13378999999999763 5678999999753 32 322 22211100 00001111111
Q ss_pred hhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc--cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHH
Q 001989 849 SALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK--HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKR 926 (985)
Q Consensus 849 ~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~--g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~ 926 (985)
..+.+.|+.+..+|.+|++++.++..++++++.++|++ ++++..++...+..+.+.+.+++. ...+.+..++.++
T Consensus 308 --~~~~~~~aal~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~~~~v~f~~~~~-~~~~~~~~~l~~~ 384 (452)
T 2dgk_A 308 --GQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIAKLGPYEFICTGRPDEGIPAVCFKLKDG-EDPGYTLYDLSER 384 (452)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSEEEEEECCTTTBSSEEEEEECTT-CCCSCCHHHHHHH
T ss_pred --HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEecCCCCCCCeEEEEEEecCc-ccccCCHHHHHHH
Confidence 12344577788889999999999999999999999987 355543221012344566666420 0001356899999
Q ss_pred HHHCCCccCCCCCC----CCCEEEEeccCCCCHHHHHHHHccCChhHHHHhhccC
Q 001989 927 LMDYGFHGPTMSWP----VPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRLKMG 977 (985)
Q Consensus 927 L~~~Gi~~~~~~~p----~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~~~~ 977 (985)
|.++||.++....| ..+.+||+++..+|++|+|+ +++.|+++++.++..
T Consensus 385 L~~~Gi~v~~~~~~~~~~~~~~lRis~~~~~t~e~id~--li~~l~~~~~~~~~~ 437 (452)
T 2dgk_A 385 LRLRGWQVPAFTLGGEATDIVVMRIMCRRGFEMDFAEL--LLEDYKASLKYLSDH 437 (452)
T ss_dssp HHHTTCBCCEEECSTTCTTCEEEEEECCTTCCHHHHHH--HHHHHHHHHHHHHHC
T ss_pred HHhcCCeeeeeeCCcccCCeEEEEEEecCCCCHHHHHH--HHHHHHHHHHHHHhC
Confidence 99999976542222 13489999999999999999 889999998877654
|
| >3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=4.4e-26 Score=271.84 Aligned_cols=384 Identities=15% Similarity=0.153 Sum_probs=262.2
Q ss_pred CCCccccCCCCHHHHHHHHHHHhccccCcccccccccccccCCCccccccccccccccccCCCCchhhhhhHHHHHHHHH
Q 001989 559 LTHPVFNKYHTEHELLRYIHLLQSKELSLCHSMIPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLG 638 (985)
Q Consensus 559 ~~~p~~~~~~se~e~~~~l~~l~~~~~~~~~~~~~lG~~t~~~~~~~~~~~~~~~~f~~~~p~~p~e~~~G~~~~~~e~~ 638 (985)
..+| ..+.++.++++.++++...+.....+..++|+.....+............+.+.+++++ ..+++..++..+++
T Consensus 69 ~~lp--~~g~~~~~i~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~p~~~~le~~l~ 145 (514)
T 3mad_A 69 ARLP--RAGLPRAEILAEIAAMGAAESPAWRDGYASGAVYHGDEHHIAFLNEVYALQSQSNPLHP-DLWPSTAKFEAEVV 145 (514)
T ss_dssp SSCC--SSCCCHHHHHHHHHHHHHHHHHHHHTTCBSSSCSCCCHHHHHHHHHHHHHHTTCCTTCT-TTCHHHHHHHHHHH
T ss_pred CCCC--CCCCCHHHHHHHHHHHHhccCCCCCCCceEEEecCCCCCHHHHHHHHHHHHhhcCCccc-ccChHHHHHHHHHH
Confidence 3556 68999999999999987555321122344554211111111111111222333344443 45678888899999
Q ss_pred HHHHHHhCCCc---cc--eecCcHHHHHHHHHHHHHHHHH-hcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcCCCC
Q 001989 639 EWLCTITGFDS---FS--LQPNAGAAGEYAGLMVIRAYHK-ARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAK 712 (985)
Q Consensus 639 ~~la~l~G~~~---~~--~~~~sGa~a~~a~l~air~~~~-~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~d~~ 712 (985)
+++++++|.+. .. +++++|++|++.++++++.... .+| .++++||++...|..+...++..|++++.+|++++
T Consensus 146 ~~la~~~g~~~~~~~v~~~~t~ggt~a~~~al~a~~~~g~~~~g-~~~d~Vi~~~~~~~~~~~~~~~~G~~v~~v~~~~~ 224 (514)
T 3mad_A 146 AMTAHMLGGDAAGGTVCGTVTSGGTESLLLAMKTYRDWARATKG-ITAPEAVVPVSAHAAFDKAAQYFGIKLVRTPLDAD 224 (514)
T ss_dssp HHHHHHTTGGGGTSCCEEEEESSHHHHHHHHHHHHHHHHHHHHC-CSSCEEEEETTSCTHHHHHHHHHTCEEEEECBCTT
T ss_pred HHHHHHcCCCCccCCcceEEcCcHHHHHHHHHHHHHHHhhhhcC-CCCCeEEEeCccchHHHHHHHHcCCeeEEeeeCCC
Confidence 99999999883 33 6778888888877777765431 123 24589999999998888888889999999999889
Q ss_pred CCCCHHHHHHHHHhcCCCEEEEEEEcCC-CccccccCHHHHHHHHHHcCCEEEEEcccccccc------C----CCCCCc
Q 001989 713 GNINIEELRKAAEANRDNLSTLMVTYPS-THGVYEEGIDEICKIIHDNGGQVYMDGANMNAQV------G----LTSPGY 781 (985)
Q Consensus 713 g~iD~e~L~~~i~~~~~~t~~Vvv~~pn-~~G~i~~di~eI~~la~~~galliVD~a~~~~~~------~----l~~pg~ 781 (985)
+.+|+++|+++|+ +++++|++++|+ .+|.+. |+++|+++|+++|+++|+|++|..... + ......
T Consensus 225 ~~~d~~~Le~~i~---~~~~~v~~~~~~nptG~~~-~l~~i~~la~~~~i~livDea~~~~~~~~~~~~g~~~~~~~~~~ 300 (514)
T 3mad_A 225 YRADVAAMREAIT---PNTVVVAGSAPGYPHGVVD-PIPEIAALAAEHGIGCHVDACLGGFILPWAERLGYPVPPFDFRL 300 (514)
T ss_dssp SCBCHHHHHHHCC---TTEEEEEEETTCTTTCCCC-CHHHHHHHHHHHTCEEEEECTTTTTTHHHHHHTTCCCCCCSTTS
T ss_pred CCCCHHHHHHHhc---cCCEEEEEeCCCCCCcccc-CHHHHHHHHHHhCCeEEEecccccccchhHHhcCCCCCcccccC
Confidence 9999999999997 789999999996 599998 899999999999999999999742110 1 012245
Q ss_pred cCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCcc-ccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHH
Q 001989 782 IGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPV-VSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYI 860 (985)
Q Consensus 782 ~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~-g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l 860 (985)
.|+|++++++||++. ||+++|+++++++.......... .+... .. ....+.++.. .....+.|+.+
T Consensus 301 ~g~d~~~~s~~K~l~-----~~~~~g~~~~~~~~~~~~~~~~~~~~~~~--~~----~~~~~~gs~~--~~~~~a~~aal 367 (514)
T 3mad_A 301 EGVTSVSADTHKYGY-----GAKGTSVILYRRPDLLHYQYFIAADWPGG--LY----FSPTFAGSRP--GALSATAWAAM 367 (514)
T ss_dssp TTCCEEEECTTTTTC-----CCSSCEEEEESSHHHHTTTCEEESSCTTC--SE----EESSSCSSCC--HHHHHHHHHHH
T ss_pred CCCcEEEECchhccC-----CCCCeEEEEEeCHHHhccccccccccCCC--cc----cCCccCCCCc--hHHHHHHHHHH
Confidence 689999999999963 45688999888654322211000 00000 00 0001111111 12234567888
Q ss_pred HHhcHHHHHHHHHHHHHHHHHHHHHhhccCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCCCC
Q 001989 861 AMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWP 940 (985)
Q Consensus 861 ~~lg~eGl~~~~~~~~~~a~~l~~~L~~g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~~p 940 (985)
..++.+++.+..++..++++++.++|++..++...++... .+.+... +.+..++.++|.++||.+....+
T Consensus 368 ~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~---~~~~~~~------~~~~~~l~~~L~~~Gi~v~g~~~- 437 (514)
T 3mad_A 368 LSLGEEGYLDATRRILQAADRLKAGVRAIPSLKILGDPLW---VIAVASD------ELNIYQVMEEMAGRGWRLNGLHR- 437 (514)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCEESSCCSS---EEEEECS------SSCHHHHHHHHHTTTCBCEEETT-
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHhhCCCeEEeCCCeE---EEEEeCC------CCCHHHHHHHHHhcCCEeccCCC-
Confidence 8889999999999999999999999987323222222111 2333332 46788999999999998854444
Q ss_pred CCCEEEEeccC-CCCHHHHHHHHccCChhHHHHhhcc
Q 001989 941 VPGTLMIEPTE-SESKSWTGIVMLSSPSEKKLHRLKM 976 (985)
Q Consensus 941 ~~~~lris~t~-~~t~eeId~~~~~~~l~~~~~~~~~ 976 (985)
++.+|++++. .++++|||+ +++.|++++++++.
T Consensus 438 -~~~~Ri~~~~~~~~~e~i~~--~l~~L~~~l~~~~~ 471 (514)
T 3mad_A 438 -PPAFHVALTLRHTEPGVVDR--FLADLQDAVAQVRA 471 (514)
T ss_dssp -TTEEEEECCGGGGSTTHHHH--HHHHHHHHHHHHHH
T ss_pred -CCeEEEEEecCCCCHHHHHH--HHHHHHHHHHHHHh
Confidence 3789999984 456799999 88999999988765
|
| >2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate, alternative splicing, pyridoxal phosphate (PLP), structural genomics consortium (SGC); HET: PLP; 1.6A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=3e-26 Score=273.30 Aligned_cols=397 Identities=13% Similarity=0.065 Sum_probs=253.9
Q ss_pred CCccCCCCCCCCccccCCCCHHHHHHHHHHHhccccCcccccccccccccCCCcc---ccccccccccccccCCCCchhh
Q 001989 550 SGLTRESPYLTHPVFNKYHTEHELLRYIHLLQSKELSLCHSMIPLGSCTMKLNAT---TEMMPVTWPSFANIHPFAPADQ 626 (985)
Q Consensus 550 ~~~~~~~~~~~~p~~~~~~se~e~~~~l~~l~~~~~~~~~~~~~lG~~t~~~~~~---~~~~~~~~~~f~~~~p~~p~e~ 626 (985)
+.++..-+. .+| .++.++.++++.++++...+.... ...||++.+....+. .++. ..+.|-+.++. +.
T Consensus 72 ~~l~~~~~~-~~p--~~~~~~~~~~~~~~~~~~~~~~~~-~p~~~~~~~~~~~~~~~~~~~l----~~~~n~~~~~~-~~ 142 (515)
T 2jis_A 72 EELKQLLDL-ELR--SQGESQKQILERCRAVIRYSVKTG-HPRFFNQLFSGLDPHALAGRII----TESLNTSQYTY-EI 142 (515)
T ss_dssp HHHHHHHCC-CCC--SSCCCHHHHHHHHHHHHHHSCCTT-STTEESSSCCCCCHHHHHHHHH----HHHHCCCTTCT-TT
T ss_pred HHHHhhccc-CCC--CCCCCHHHHHHHHHHHhcCCCCCC-CCCeEEEeeCCCCHHHHHHHHH----HHHhccCCCch-hh
Confidence 344433333 567 588999999999999888775543 456777532222221 1111 12223232233 56
Q ss_pred hhhHHHHHHHHHHHHHHHhCCCcc-ceecCcHHHHHHHHHHHHHHHH----HhcCC--CCCCEEEEcCCCCcccHHHHHH
Q 001989 627 AQGYQEMFNNLGEWLCTITGFDSF-SLQPNAGAAGEYAGLMVIRAYH----KARGD--HHRNVCIIPVSAHGTNPATAAM 699 (985)
Q Consensus 627 ~~G~~~~~~e~~~~la~l~G~~~~-~~~~~sGa~a~~a~l~air~~~----~~~g~--~~~~~IIv~~~~Hg~~~~~a~~ 699 (985)
+++..++.+++++++++++|++.. .++.++|++|++.++.++|.+. ..+|. .++.+|++++..|.++.+.++.
T Consensus 143 s~~~~~le~~~~~~la~l~g~~~~~~~~t~ggtea~~~al~~ar~~~~~~~~~~G~~~~~~~~vl~s~~~h~s~~~~~~~ 222 (515)
T 2jis_A 143 APVFVLMEEEVLRKLRALVGWSSGDGIFCPGGSISNMYAVNLARYQRYPDCKQRGLRTLPPLALFTSKECHYSIQKGAAF 222 (515)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCSSCEEEEESSHHHHHHHHHHHHHHHHCTTHHHHCGGGSCCEEEEEETTSCTHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHhCCCCCCeEEcCCcHHHHHHHHHHHHHHHhhHHhhcCccccCCeEEEECCCccHHHHHHHHH
Confidence 789999999999999999999753 3555677887777776665432 11221 0122788998889998888888
Q ss_pred CCc---EEEEEcCCCCCCCCHHHHHHHHHhc---CCCEEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEcccccc
Q 001989 700 CGM---KIVSVGTDAKGNINIEELRKAAEAN---RDNLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNA 772 (985)
Q Consensus 700 ~G~---~vv~v~~d~~g~iD~e~L~~~i~~~---~~~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~galliVD~a~~~~ 772 (985)
.|+ +++.+|+++++.+|+++|+++|++. ..++++|++++| |.+|.++ |+++|+++|+++|+|+|||+++..+
T Consensus 223 ~g~g~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~g~~~~~Vv~~~~~n~tG~i~-~l~~I~~la~~~g~~l~vD~a~~~~ 301 (515)
T 2jis_A 223 LGLGTDSVRVVKADERGKMVPEDLERQIGMAEAEGAVPFLVSATSGTTVLGAFD-PLEAIADVCQRHGLWLHVDAAWGGS 301 (515)
T ss_dssp TTSCGGGEEEECBCTTSCBCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBC-CHHHHHHHHHHHTCEEEEEETTGGG
T ss_pred cCCCCCcEEEEecCCCCcCCHHHHHHHHHHHHhCCCCcEEEEEeCCCCCCCCcc-CHHHHHHHHHHcCCeEEEehhhhhH
Confidence 888 8999999888999999999999731 125899999998 4699998 8999999999999999999998533
Q ss_pred ccCCC-----CCCccCCcEEEeCCcccccccCCCCCCceEEEEEccc--ccCc----CCCCccccCCCC-CCCCCCCCCC
Q 001989 773 QVGLT-----SPGYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKH--LAPF----LPSHPVVSTGGI-PAPEKSQPLG 840 (985)
Q Consensus 773 ~~~l~-----~pg~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~--l~~~----lp~~~~g~~~~~-~~~~~~~~~~ 840 (985)
..... -.+..++|++++++||||+.| .|+|+++++++ +.+. .++++.+...+. ..+ +..+.
T Consensus 302 ~~~~~~~~~~~~g~~~aD~v~~s~hK~l~~p-----~g~G~l~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~--~~~~~ 374 (515)
T 2jis_A 302 VLLSQTHRHLLDGIQRADSVAWNPHKLLAAG-----LQCSALLLQDTSNLLKRCHGSQASYLFQQDKFYDVAL--DTGDK 374 (515)
T ss_dssp GGGCTTTGGGGTTGGGCSEEEECTTSTTCCC-----SCCEEEEESCCSCHHHHHHCC---------CCSCGGG--CCGGG
T ss_pred HHhChhhHhhcCCCccCCEEEECcccccCCC-----CCeeEEEEeChHHHHHHHhcCCchhccCCcccccccC--CCCCC
Confidence 22111 012237899999999998533 25789999866 4332 333332221100 000 00111
Q ss_pred CCCCcchhhhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc--cCCeeecCCCCceeeEEEEEecCccccCC-
Q 001989 841 TIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK--HYPILFRGVNGTVAHEFIVDLRGLKNTAG- 917 (985)
Q Consensus 841 ~i~s~~~g~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~--g~~l~~~~~~~~~~~~~iv~~~~~~~~~g- 917 (985)
.+..+ ....+...|+.++.+|.+|++++.++..++++++.++|++ ++++. ++ +....+++.+.+-. ..+
T Consensus 375 ~~~~~---rr~~al~~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~~--~~--~~~~~v~f~~~p~~-~~~~ 446 (515)
T 2jis_A 375 VVQCG---RRVDCLKLWLMWKAQGDQGLERRIDQAFVLARYLVEEMKKREGFELV--ME--PEFVNVCFWFVPPS-LRGK 446 (515)
T ss_dssp CSCSS---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTEEES--SC--CSSSEEEEEECCGG-GTTC
T ss_pred CCCCC---CcccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEe--CC--CCeeEEEEEEeCcc-cccc
Confidence 11100 0011234577788899999999999999999999999987 34443 21 12233455431100 001
Q ss_pred ---CC--------HHHHHHHHHHCCCccCC-CCCC-CCCEEEEec-cCCCCHHHHHHHHccCChhHHHHh
Q 001989 918 ---IE--------PEDVAKRLMDYGFHGPT-MSWP-VPGTLMIEP-TESESKSWTGIVMLSSPSEKKLHR 973 (985)
Q Consensus 918 ---~~--------~~~v~~~L~~~Gi~~~~-~~~p-~~~~lris~-t~~~t~eeId~~~~~~~l~~~~~~ 973 (985)
.+ ...+.+.|.+.|+.... ...+ ..+.+|+++ +.++|++|||+ +++.|++++++
T Consensus 447 ~~~~~~~~~l~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~lRis~~~~~~t~edid~--~~~~l~~~~~~ 514 (515)
T 2jis_A 447 QESPDYHERLSKVAPVLKERMVKEGSMMIGYQPHGTRGNFFRVVVANSALTCADMDF--LLNELERLGQD 514 (515)
T ss_dssp TTSTTHHHHHHTHHHHHHHHHHHHTSCEEEEEEETTEEEEEEEECCCTTCCHHHHHH--HHHHHHHHHTT
T ss_pred ccchhHHHHHHHHHHHHHHHHHhcCCEEEEEEEECCceEEEEEEeCCCCCCHHHHHH--HHHHHHHHHhh
Confidence 11 11367778888876421 1111 126899999 89999999999 77888777653
|
| >3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.94 E-value=9.9e-25 Score=249.45 Aligned_cols=367 Identities=16% Similarity=0.154 Sum_probs=251.7
Q ss_pred CccccCCCCHHHHHHHHHHHhccccCcccccccccccccCCCccccccccccccccccCCCCchhhhhhHHHHHHHHHHH
Q 001989 561 HPVFNKYHTEHELLRYIHLLQSKELSLCHSMIPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEW 640 (985)
Q Consensus 561 ~p~~~~~~se~e~~~~l~~l~~~~~~~~~~~~~lG~~t~~~~~~~~~~~~~~~~f~~~~p~~p~e~~~G~~~~~~e~~~~ 640 (985)
+| ..+.++.++++++.++...+..+. +..++|+++...++........ +...+...+ ...++..+...+++++
T Consensus 5 lp--~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~a~~~---~~~~~~~~~-~~~~~~~~~~~~l~~~ 77 (397)
T 3f9t_A 5 MQ--EKGVSEKEILEELKKYRSLDLKYE-DGNIFGSMCSNVLPITRKIVDI---FLETNLGDP-GLFKGTKLLEEKAVAL 77 (397)
T ss_dssp CC--SSCCCHHHHHHHHHHHHTTSCCGG-GTCBCSCSCCCCCTHHHHHHHH---HTTCCTTSG-GGBHHHHHHHHHHHHH
T ss_pred CC--CCCCCHHHHHHHHHHhhccCCCCC-CCCeEEEecCCCcHHHHHHHHH---HHhhcCCCc-ccChhHHHHHHHHHHH
Confidence 56 578899999999999988776654 3456887655544432111111 111011111 2245778888999999
Q ss_pred HHHHhCCCccc-eecCcHHHHHHHHHHHHHHHHHh---c--CCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcCCCCCC
Q 001989 641 LCTITGFDSFS-LQPNAGAAGEYAGLMVIRAYHKA---R--GDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKGN 714 (985)
Q Consensus 641 la~l~G~~~~~-~~~~sGa~a~~a~l~air~~~~~---~--g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~d~~g~ 714 (985)
+++++|.+... +++++|++|++.++.+++..... . +..++++|+++...|+.+...++..|++++.+|+++++.
T Consensus 78 la~~~~~~~~~i~~~~ggt~a~~~~~~~~~~~~~~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~ 157 (397)
T 3f9t_A 78 LGSLLNNKDAYGHIVSGGTEANLMALRCIKNIWREKRRKGLSKNEHPKIIVPITAHFSFEKGREMMDLEYIYAPIKEDYT 157 (397)
T ss_dssp HHHHTTCTTCEEEEESCHHHHHHHHHHHHHHHHHHHHHTTCCCCSSCEEEEETTCCTHHHHHHHHHTCEEEEECBCTTSS
T ss_pred HHHHhCCCCCCEEEecCcHHHHHHHHHHHHHHHHhhhhhcccCCCCeEEEECCcchhHHHHHHHHcCceeEEEeeCCCCc
Confidence 99999998754 56678888887777766542110 0 113578999999999888888888899999999998899
Q ss_pred CCHHHHHHHHHhcCC-CEEEEEEEcCC-CccccccCHHHHHHHHHHcCCEEEEEccccccccCCC----------CCCcc
Q 001989 715 INIEELRKAAEANRD-NLSTLMVTYPS-THGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLT----------SPGYI 782 (985)
Q Consensus 715 iD~e~L~~~i~~~~~-~t~~Vvv~~pn-~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~----------~pg~~ 782 (985)
+|+++|+++++ + ++++|++++|+ ++|.+. |+++|.++|+++|+++|+|+++.....+.. .+..+
T Consensus 158 ~d~~~l~~~i~---~~~~~~v~~~~~~nptG~~~-~l~~i~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~ 233 (397)
T 3f9t_A 158 IDEKFVKDAVE---DYDVDGIIGIAGTTELGTID-NIEELSKIAKENNIYIHVDAAFGGLVIPFLDDKYKKKGVNYKFDF 233 (397)
T ss_dssp BCHHHHHHHHH---HSCCCEEEEEBSCTTTCCBC-CHHHHHHHHHHHTCEEEEECTTGGGTGGGCCGGGCCTTCCCCCSG
T ss_pred CCHHHHHHHHh---hcCCeEEEEECCCCCCCCCC-CHHHHHHHHHHhCCeEEEEccccchhhhhcccccccccccccccc
Confidence 99999999998 5 78899999984 799998 899999999999999999999852211110 01111
Q ss_pred --CCcEEEeCCcccccccCCCCCCceEEEEEccc-ccCcCC---CCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHH
Q 001989 783 --GADVCHLNLHKTFCIPHGGGGPGMGPIGVKKH-LAPFLP---SHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPIS 856 (985)
Q Consensus 783 --g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~-l~~~lp---~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a 856 (985)
++|++++++||+++ +|.++|+++++++ +.+.+. ....+.. .. ...++..+. .....
T Consensus 234 ~~~~~~~~~s~~K~~~-----~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~--------~~---~~~~~~~~~--~~~~~ 295 (397)
T 3f9t_A 234 SLGVDSITIDPHKMGH-----CPIPSGGILFKDIGYKRYLDVDAPYLTETR--------QA---TILGTRVGF--GGACT 295 (397)
T ss_dssp GGTCSEEECCTTTTTC-----CCSSCEEEEESSGGGGGGTCEECTTSSSSE--------EC---SSCSSCCSH--HHHHH
T ss_pred cccCCeEEEccccccC-----CCCCceEEEEeCHHHHHhhccCCccccCCC--------cc---ccccccccc--hHHHH
Confidence 78999999999874 2346778877654 443331 1111100 00 000011111 22334
Q ss_pred HHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccC
Q 001989 857 YTYIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGP 935 (985)
Q Consensus 857 ~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~ 935 (985)
++.+..++.+++.+..++..++++++.+.|++ ++.+... + ..+.+.+.++ +..++.+.|.++||.+.
T Consensus 296 ~a~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~-~---~~~~~~~~~~--------~~~~~~~~l~~~gi~v~ 363 (397)
T 3f9t_A 296 YAVLRYLGREGQRKIVNECMENTLYLYKKLKENNFKPVIE-P---ILNIVAIEDE--------DYKEVCKKLRDRGIYVS 363 (397)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCBSSC-C---SSSEEEEECT--------THHHHHHHHHHTTCBCE
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEcC-C---CccEEEEEeC--------CHHHHHHHHHhCCeEEe
Confidence 55666677788888888889999999999987 4554322 1 1222345443 37889999999999876
Q ss_pred CCCCCCCCEEEEeccCCCCHHHHHHHHccCChhHHHH
Q 001989 936 TMSWPVPGTLMIEPTESESKSWTGIVMLSSPSEKKLH 972 (985)
Q Consensus 936 ~~~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~ 972 (985)
.... ++.+||+++..+|++|+++ +++.|+++++
T Consensus 364 ~~~~--~~~~Ri~~~~~~~~e~i~~--~~~~l~~~l~ 396 (397)
T 3f9t_A 364 VCNC--VKALRIVVMPHIKREHIDN--FIEILNSIKR 396 (397)
T ss_dssp ECSS--SSEEEEECCTTCCHHHHHH--HHHHHHHHC-
T ss_pred ccCC--CCEEEEEEcCCCCHHHHHH--HHHHHHHhhC
Confidence 5443 3899999999999999999 7777777653
|
| >3vp6_A Glutamate decarboxylase 1; catalytic loop SWAP, lyase; HET: LLP HLD; 2.10A {Homo sapiens} PDB: 2okj_A* 2okk_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.7e-25 Score=266.16 Aligned_cols=392 Identities=13% Similarity=0.074 Sum_probs=255.0
Q ss_pred CCccccCCCCHHHHHHHHHHHhccccCcccccccccccccCCCcc---ccccccccccccccCCCCchhhhhhHHHHHHH
Q 001989 560 THPVFNKYHTEHELLRYIHLLQSKELSLCHSMIPLGSCTMKLNAT---TEMMPVTWPSFANIHPFAPADQAQGYQEMFNN 636 (985)
Q Consensus 560 ~~p~~~~~~se~e~~~~l~~l~~~~~~~~~~~~~lG~~t~~~~~~---~~~~~~~~~~f~~~~p~~p~e~~~G~~~~~~e 636 (985)
.+| ..+.++.+++++++++...+..+ ....+||+-....... .++....... +.+.| +.+++..++.++
T Consensus 68 ~~p--~~~~~~~~~~~~~~~~~~~~~~~-~~p~f~~~~~~~~~~~~~~~e~l~~~~~~--~~~~~---~~~p~~~~le~~ 139 (511)
T 3vp6_A 68 ELS--DHPESLEQILVDCRDTLKYGVRT-GHPRFFNQLSTGLDIIGLAGEWLTSTANT--NMFTY---EIAPVFVLMEQI 139 (511)
T ss_dssp CCC--SSCCCHHHHHHHHHHHHHTSCCT-TSTTEESSSSCCCCHHHHHHHHHHHHHCC--CSSCT---TTCHHHHHHHHH
T ss_pred CCC--CCCCCHHHHHHHHHHHhhccCCC-CCCCceEeecCCCcHHHHHHHHHHHHhcc--CCCCc---ccCchHHHHHHH
Confidence 567 57899999999999998887665 4466777432121111 1222111111 11223 346788889999
Q ss_pred HHHHHHHHhCCCc---cceecCcHHHHHHHHHHHHHHHH----HhcCC--CCCCEEEEcCCCCcccHHHHHHCCc---EE
Q 001989 637 LGEWLCTITGFDS---FSLQPNAGAAGEYAGLMVIRAYH----KARGD--HHRNVCIIPVSAHGTNPATAAMCGM---KI 704 (985)
Q Consensus 637 ~~~~la~l~G~~~---~~~~~~sGa~a~~a~l~air~~~----~~~g~--~~~~~IIv~~~~Hg~~~~~a~~~G~---~v 704 (985)
+.+|+++++|++. ..++.++|++|++.++++++... ..+|. .++++|+++...|.++.+.++..|+ ++
T Consensus 140 ~~~~l~~~~g~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~G~~~~~~~~v~~s~~~H~s~~~~~~~~g~g~~~~ 219 (511)
T 3vp6_A 140 TLKKMREIVGWSSKDGDGIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVPKLVLFTSEQSHYSIKKAGAALGFGTDNV 219 (511)
T ss_dssp HHHHHHHHHTCCSSSCEEEEESSHHHHHHHHHHHHHHHHCTHHHHHCGGGSCCEEEEEETTSCTHHHHHHHHTTSCGGGE
T ss_pred HHHHHHHHhCCCCCCCceEECCchHHHHHHHHHHHHHHhhhhhhhcCcccCCCeEEEECCCchHHHHHHHHHcCCCCCcE
Confidence 9999999999983 34566778888877777766431 12231 1456888999999999888998888 99
Q ss_pred EEEcCCCCCCCCHHHHHHHHHhc---CCCEEEEEEEcCC-CccccccCHHHHHHHHHHcCCEEEEEccccccccCCC---
Q 001989 705 VSVGTDAKGNINIEELRKAAEAN---RDNLSTLMVTYPS-THGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLT--- 777 (985)
Q Consensus 705 v~v~~d~~g~iD~e~L~~~i~~~---~~~t~~Vvv~~pn-~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~--- 777 (985)
+.+|++++|.+|+++|+++|++. ...+++|++++|+ .+|.++ |+++|+++|+++|+|+|||+++..+.....
T Consensus 220 ~~v~~d~~~~~d~~~Le~~i~~~~~~g~~~~~vv~~~~~~~~G~vd-~l~~I~~ia~~~~~~lhvD~a~~~~~~~~~~~~ 298 (511)
T 3vp6_A 220 ILIKCNERGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFD-PIQEIADICEKYNLWLHVDAAWGGGLLMSRKHR 298 (511)
T ss_dssp EEECBCTTSCBCHHHHHHHHHHHHHTTCEEEEEEEEBSCSSSCCBC-CHHHHHHHHHHHTCEEEEEETTGGGGGGCTTTG
T ss_pred EEeecCCCCccCHHHHHHHHHHHHhcCCCcEEEEEecCCCCCcccc-cHHHHHHHHHHcCCEEEEEccchhhHhhChhhh
Confidence 99999989999999999999731 1128899999985 699998 899999999999999999999853322110
Q ss_pred --CCCccCCcEEEeCCcccccccCCCCCCceEEEEEccc-ccC----cCCCCccccCCCC-CCCC-CCCCCCCCCCcchh
Q 001989 778 --SPGYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKH-LAP----FLPSHPVVSTGGI-PAPE-KSQPLGTIAAAPWG 848 (985)
Q Consensus 778 --~pg~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~-l~~----~lp~~~~g~~~~~-~~~~-~~~~~~~i~s~~~g 848 (985)
..+..++|++++++||||+.| ++.|++++++. +.. ..+.++.....+. ..+. ..+.. -++.+
T Consensus 299 ~~~~g~~~aDsv~~~~hK~l~~p-----~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~--~~~r~-- 369 (511)
T 3vp6_A 299 HKLNGIERANSVTWNPHKMMGVL-----LQCSAILVKEKGILQGCNQMHASYLFQQDKHYDVSYDTGDKAI--QCGRH-- 369 (511)
T ss_dssp GGGTTGGGCSEEEECTTSTTCCC-----SCCEEEEESSTTHHHHHHCCCCTTTCCSSCSSCGGGCCGGGSS--CSSCC--
T ss_pred hhccCCccCCEEEECcccccCCC-----cCeEEEEEeCHHHHHHHhccCCccccCcccccccccCccCCCC--CCCCc--
Confidence 013456899999999999654 35678888753 222 1233322111000 0000 00000 01111
Q ss_pred hhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc--cCCeeecCCCCceeeEEEEEecCccc-cCCC-------
Q 001989 849 SALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK--HYPILFRGVNGTVAHEFIVDLRGLKN-TAGI------- 918 (985)
Q Consensus 849 ~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~--g~~l~~~~~~~~~~~~~iv~~~~~~~-~~g~------- 918 (985)
..+...|+++..+|.+|+.++.++..++++++++.|++ ++++....+ +....+++.+.+... ..+.
T Consensus 370 --~~al~~~~al~~~g~~gl~~~~~~~~~~a~~l~~~L~~~pg~~l~~~~~--p~~~~v~f~~~p~~~~~~~~~~~~~~~ 445 (511)
T 3vp6_A 370 --VDIFKFWLMWKAKGTVGFENQINKCLELAEYLYAKIKNREEFEMVFNGE--PEHTNVCFWYIPQSLRGVPDSPQRREK 445 (511)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTEEESSSSC--CSSSCEEEEECCGGGSSCCCCHHHHHH
T ss_pred --hHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEecCC--CCeEEEEEEEeCccccccccchhHHHH
Confidence 12345788899999999999999999999999999986 444432101 223334554421100 0000
Q ss_pred ---CHHHHHHHHHHCCCccCCCCC-CC-CCEEEEec-cCCCCHHHHHHHHccCChhHHHHhhc
Q 001989 919 ---EPEDVAKRLMDYGFHGPTMSW-PV-PGTLMIEP-TESESKSWTGIVMLSSPSEKKLHRLK 975 (985)
Q Consensus 919 ---~~~~v~~~L~~~Gi~~~~~~~-p~-~~~lris~-t~~~t~eeId~~~~~~~l~~~~~~~~ 975 (985)
...++.++|.++|+.+....+ +. .+.+|+++ +..+|.+|||+ +++.|+++-+.+.
T Consensus 446 l~~~~~~l~~~L~~~G~~~~~~~~~~~~~~~lRi~~~~~~~t~~di~~--ll~~i~~~~~~~~ 506 (511)
T 3vp6_A 446 LHKVAPKIKALMMESGTTMVGYQPQGDKANFFRMVISNPAATQSDIDF--LIEEIERLGQDLH 506 (511)
T ss_dssp HHHHHHHHHHHHHHHTSCEEEEEEETTEEEEEEECCCCTTCCHHHHHH--HHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHhcCCEEEEEEEeCCceEEEEEEecCCCCCHHHHHH--HHHHHHHHHHhhh
Confidence 134688999999976432111 11 14699999 78999999999 6777777766554
|
| >2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate, alternative splicing, pyridoxal phosphate (PLP), structural genomics consortium (SGC); HET: PLP; 1.6A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=3.4e-25 Score=264.20 Aligned_cols=359 Identities=14% Similarity=0.072 Sum_probs=241.6
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhcCCCc--cceecCCCCCCCCCcHHHHHHHHhCCcccccc-CCC--hhhHhhhHHHH
Q 001989 138 SMKFSKFDEGLTESQMIEHMQKLASMNKV--YKSFIGMGYYNTHVPPVILRNIMENPAWYTQY-TPY--QAEIAQGRLES 212 (985)
Q Consensus 138 ~~~lp~~~~~~se~e~~~~~~~l~~~n~~--~~~~lG~g~y~~~~p~~v~~~i~~~~~~~t~~-~py--q~e~sqg~l~~ 212 (985)
+.++| .+++++.|++++++++...+.. ...|++....+ ..|..+.. +|+++| +|+ +.+.+++..+.
T Consensus 79 ~~~~p--~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~-~~~~~~~~------~~l~~~~n~~~~~~~~s~~~~~l 149 (515)
T 2jis_A 79 DLELR--SQGESQKQILERCRAVIRYSVKTGHPRFFNQLFSG-LDPHALAG------RIITESLNTSQYTYEIAPVFVLM 149 (515)
T ss_dssp CCCCC--SSCCCHHHHHHHHHHHHHHSCCTTSTTEESSSCCC-CCHHHHHH------HHHHHHHCCCTTCTTTCHHHHHH
T ss_pred ccCCC--CCCCCHHHHHHHHHHHhcCCCCCCCCCeEEEeeCC-CCHHHHHH------HHHHHHhccCCCchhhchHHHHH
Confidence 46677 5789999999999998876643 22355433211 24444432 344444 444 56788999999
Q ss_pred HHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhh-----cCCCC------EEEEcCCCChhHHHHHHHhhcCCCe
Q 001989 213 LLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQ-----KGKKK------TFIIASNCHPQTIDICITRADGFDI 281 (985)
Q Consensus 213 i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~-----~~~g~------~Vlv~~~~H~s~~~~~~~~a~~~gi 281 (985)
..++++++|+++|++..++.+++|||.++..++.+.+.. +.+|+ +|++++..|+++...++.+ +.|.
T Consensus 150 e~~~~~~la~l~g~~~~~~~~t~ggtea~~~al~~ar~~~~~~~~~~G~~~~~~~~vl~s~~~h~s~~~~~~~~--g~g~ 227 (515)
T 2jis_A 150 EEEVLRKLRALVGWSSGDGIFCPGGSISNMYAVNLARYQRYPDCKQRGLRTLPPLALFTSKECHYSIQKGAAFL--GLGT 227 (515)
T ss_dssp HHHHHHHHHHHHTCSSCEEEEESSHHHHHHHHHHHHHHHHCTTHHHHCGGGSCCEEEEEETTSCTHHHHHHHHT--TSCG
T ss_pred HHHHHHHHHHHhCCCCCCeEEcCCcHHHHHHHHHHHHHHHhhHHhhcCccccCCeEEEECCCccHHHHHHHHHc--CCCC
Confidence 999999999999999888999999997766555443210 11343 8999999999999998754 2343
Q ss_pred -EEEEeCc--------hhhhc-cCC------CEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCCCC
Q 001989 282 -KVVVSDL--------KDIDY-KSG------DVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKPP 344 (985)
Q Consensus 282 -~v~~v~~--------~~l~~-l~~------~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~~~ 344 (985)
+++.++. ++|++ +++ ++++|++++| |.+|.+.|+++|+++||++|++++||+ .++.+.+..+
T Consensus 228 ~~v~~v~~~~~~~~d~~~L~~~i~~~~~~g~~~~~Vv~~~~~n~tG~i~~l~~I~~la~~~g~~l~vD~-a~~~~~~~~~ 306 (515)
T 2jis_A 228 DSVRVVKADERGKMVPEDLERQIGMAEAEGAVPFLVSATSGTTVLGAFDPLEAIADVCQRHGLWLHVDA-AWGGSVLLSQ 306 (515)
T ss_dssp GGEEEECBCTTSCBCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHHTCEEEEEE-TTGGGGGGCT
T ss_pred CcEEEEecCCCCcCCHHHHHHHHHHHHhCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCCeEEEeh-hhhhHHHhCh
Confidence 6777764 34555 543 4899999998 789999999999999999999999954 3444433222
Q ss_pred -------CcccceEEEecC-ccccccCCCCCCcEEEEEEchh--hHhc----CCCceeeeeecCCCCc-ceeeecccccc
Q 001989 345 -------GELGADIVVGSA-QRFGVPMGYGGPHAAFLATSQE--YKRM----MPGRIVGVSIDSSGKP-ALRVAMQTREQ 409 (985)
Q Consensus 345 -------~~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~--~~~~----lp~~~vG~t~d~~g~~-~~~l~l~tre~ 409 (985)
+-.++|++++++ |+|++|. ++|+++++++ ++++ .++.+.|...+..+.. ...+. -+
T Consensus 307 ~~~~~~~g~~~aD~v~~s~hK~l~~p~-----g~G~l~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~----~~ 377 (515)
T 2jis_A 307 THRHLLDGIQRADSVAWNPHKLLAAGL-----QCSALLLQDTSNLLKRCHGSQASYLFQQDKFYDVALDTGDKV----VQ 377 (515)
T ss_dssp TTGGGGTTGGGCSEEEECTTSTTCCCS-----CCEEEEESCCSCHHHHHHCC---------CCSCGGGCCGGGC----SC
T ss_pred hhHhhcCCCccCCEEEECcccccCCCC-----CeeEEEEeChHHHHHHHhcCCchhccCCcccccccCCCCCCC----CC
Confidence 223899999999 6555442 3789999877 6654 4666655322111100 00011 13
Q ss_pred cccccccCCCccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCCCcceEEEec-C-----
Q 001989 410 HIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDTVKVKC-A----- 483 (985)
Q Consensus 410 ~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~~~~~~~~~~-~----- 483 (985)
..||..+ ..+++. +..+|.+|++++.+++.++++++.+.|+++.+++++.++.+..|+|.. +
T Consensus 378 ~~rr~~a-------l~~~~~-----l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~~~~~~~~~v~f~~~p~~~~~ 445 (515)
T 2jis_A 378 CGRRVDC-------LKLWLM-----WKAQGDQGLERRIDQAFVLARYLVEEMKKREGFELVMEPEFVNVCFWFVPPSLRG 445 (515)
T ss_dssp SSCCCCH-------HHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTEEESSCCSSSEEEEEECCGGGTT
T ss_pred CCCcccH-------HHHHHH-----HHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCeeEEEEEEeCccccc
Confidence 4445321 223322 355678899999999999999999999998449998766566677743 1
Q ss_pred -----C-H-------HHHHHHHHHcCcee-ee--ec--CCeEEEEe-ccCCCHHHHHHHHHHHhC
Q 001989 484 -----D-A-------HAIASAAYKIEMNL-RV--VD--SNTVTASF-DETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 484 -----~-~-------~~v~~~L~~~GI~~-~~--~~--~~~lris~-t~~~t~edId~li~aL~~ 529 (985)
. . ..+.+.|.+.|+.+ .. .. .+.+|+++ ++++|++|||+++++|.+
T Consensus 446 ~~~~~~~~~~l~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~lRis~~~~~~t~edid~~~~~l~~ 510 (515)
T 2jis_A 446 KQESPDYHERLSKVAPVLKERMVKEGSMMIGYQPHGTRGNFFRVVVANSALTCADMDFLLNELER 510 (515)
T ss_dssp CTTSTTHHHHHHTHHHHHHHHHHHHTSCEEEEEEETTEEEEEEEECCCTTCCHHHHHHHHHHHHH
T ss_pred cccchhHHHHHHHHHHHHHHHHHhcCCEEEEEEEECCceEEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 1 1 13677788889754 32 12 25799999 899999999999999863
|
| >4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=4.5e-25 Score=260.84 Aligned_cols=395 Identities=14% Similarity=0.086 Sum_probs=257.4
Q ss_pred CCCccCCCCCCCCccccCCCCHHHHHHHHHHHhccccCccccccccccccc--CCCcc-ccccccccccccccCCCCchh
Q 001989 549 PSGLTRESPYLTHPVFNKYHTEHELLRYIHLLQSKELSLCHSMIPLGSCTM--KLNAT-TEMMPVTWPSFANIHPFAPAD 625 (985)
Q Consensus 549 p~~~~~~~~~~~~p~~~~~~se~e~~~~l~~l~~~~~~~~~~~~~lG~~t~--~~~~~-~~~~~~~~~~f~~~~p~~p~e 625 (985)
|..++..=+. .+| ..+.+.+++++.++++...+........++|+-+. ..+.. .++...... .+.+.| +
T Consensus 40 ~~~~~~~~~~-~~p--~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~n--~~~~~~---~ 111 (481)
T 4e1o_A 40 PGYLRAQLPE-SAP--EDPDSWDSIFGDIERIIMPGVVHWQSPHMHAYYPALTSWPSLLGDMLADAIN--CLGFTW---A 111 (481)
T ss_dssp TTTTGGGSCS-SCC--SSCCCHHHHHHHHHHHTGGGCCCTTSTTBCSSSCCCCCHHHHHHHHHHHHHC--CCCSST---T
T ss_pred HHHHHHhcCC-CCC--CCCCCHHHHHHHHHHHHhcCCCCCCCCCeeEeCCCCCCHHHHHHHHHHHHhC--cccCCc---C
Confidence 4444333232 567 68899999999999987666443344566764211 11111 112111111 112223 3
Q ss_pred hhhhHHHHHHHHHHHHHHHhCCCcc-----------ceecCcHHHHHHHHHHHHHHHHHh----cCC-------CCCCEE
Q 001989 626 QAQGYQEMFNNLGEWLCTITGFDSF-----------SLQPNAGAAGEYAGLMVIRAYHKA----RGD-------HHRNVC 683 (985)
Q Consensus 626 ~~~G~~~~~~e~~~~la~l~G~~~~-----------~~~~~sGa~a~~a~l~air~~~~~----~g~-------~~~~~I 683 (985)
.+++..++..++.+|+++++|.+.. .++.++|+++++.+++++|..... .+. .++++|
T Consensus 112 ~~p~~~~lE~~v~~~l~~l~g~~~~~~~~~~~~~~~g~~~~ggt~an~~al~~ar~~~~~~~~~~~~~~~~~~~~~~~~v 191 (481)
T 4e1o_A 112 SSPACTELEMNVMDWLAKMLGLPEHFLHHHPSSQGGGVLQSTVSESTLIALLAARKNKILEMKTSEPDADESSLNARLVA 191 (481)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCCGGGCTTCTTCBCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHTTEEE
T ss_pred CCcHHHHHHHHHHHHHHHHhCCChhhhccccCCCCceEEeCchHHHHHHHHHHHHHHHHHHhhhcCcccccccccCCeEE
Confidence 4678899999999999999999853 266788899998888887754211 111 145688
Q ss_pred EEcCCCCcccHHHHHHCCcEEEEEcCCCCCCCCHHHHHHHHHhcC---CCEEEEEEEcCC-CccccccCHHHHHHHHHHc
Q 001989 684 IIPVSAHGTNPATAAMCGMKIVSVGTDAKGNINIEELRKAAEANR---DNLSTLMVTYPS-THGVYEEGIDEICKIIHDN 759 (985)
Q Consensus 684 Iv~~~~Hg~~~~~a~~~G~~vv~v~~d~~g~iD~e~L~~~i~~~~---~~t~~Vvv~~pn-~~G~i~~di~eI~~la~~~ 759 (985)
+++..+|.++.+.+...|++++.||+++++.+|+++|+++|++.+ ..+.+|+++.++ .+|.++ |+++|+++|+++
T Consensus 192 ~~s~~~H~s~~~~~~~~g~~~~~v~~~~~~~~d~~~Le~~i~~~~~~g~~~~~vv~~~~~t~~G~id-~l~~I~~la~~~ 270 (481)
T 4e1o_A 192 YASDQAHSSVEKAGLISLVKMKFLPVDDNFSLRGEALQKAIEEDKQRGLVPVFVCATLGTTGVCAFD-CLSELGPICARE 270 (481)
T ss_dssp EEETTSCHHHHHHHHHHTCEEEEECCCTTSCCCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBC-CHHHHHHHHHHH
T ss_pred EEcCcchHHHHHHHHhCCCceEEEEcCCCCcCCHHHHHHHHHHHHhCCCCcEEEEEecCCCCCcCcC-CHHHHHHHHHHc
Confidence 899999999888888899999999998889999999999997321 126778888875 589998 899999999999
Q ss_pred CCEEEEEccccccccCC--CC---CCccCCcEEEeCCcccccccCCCCCCceEEEEEccc-c-cCcC---CCCccccCCC
Q 001989 760 GGQVYMDGANMNAQVGL--TS---PGYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKH-L-APFL---PSHPVVSTGG 829 (985)
Q Consensus 760 galliVD~a~~~~~~~l--~~---pg~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~-l-~~~l---p~~~~g~~~~ 829 (985)
|+|+|||+|+..+.... .+ .+-..+|++++++||||+.|+ +.|++++++. . .+.+ +.++.....+
T Consensus 271 ~~~lhvDaA~g~~~~~~~~~~~~~~gi~~aDsi~~~~hK~l~~p~-----g~g~l~~~~~~~l~~~~~~~~~yl~~~~~~ 345 (481)
T 4e1o_A 271 GLWLHIDAAYAGTAFLCPEFRGFLKGIEYADSFTFNPSKWMMVHF-----DCTGFWVKDKYKLQQTFSVNPIYLRHANSG 345 (481)
T ss_dssp TCEEEEECTTGGGGGGSGGGGGGGTTGGGCSEEEECHHHHSSCCS-----SCEEEEESBHHHHHTTTCCCCGGGCCTTTT
T ss_pred CCeEEeehhhHHHHHhChhhHHHhcCcccCCEEEEChHHhcCCCC-----ceEEEEEeCHHHHHHHhcCCchhccCcccC
Confidence 99999999985321110 01 121236999999999997653 5567777753 2 2222 1111110000
Q ss_pred CCCCC-CCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc--cCCeeecCCCCceeeEEE
Q 001989 830 IPAPE-KSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK--HYPILFRGVNGTVAHEFI 906 (985)
Q Consensus 830 ~~~~~-~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~--g~~l~~~~~~~~~~~~~i 906 (985)
.... ..+.. . ++.. ..+...|+.+..+|.+|++++.++..++++++++.|++ ++++. .+ +..+.+.
T Consensus 346 -~~~~~~~~~~-~-~~r~----~~~l~~~~al~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~~--~~--~~~~~v~ 414 (481)
T 4e1o_A 346 -VATDFMHWQI-P-LSRR----FRSVKLWFVIRSFGVKNLQAHVRHGTEMAKYFESLVRNDPSFEIP--AK--RHLGLVV 414 (481)
T ss_dssp -TSCCGGGGSS-S-SCCC----CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTEECC--SC--CCSSEEE
T ss_pred -CCCCcccccc-c-CCCC----ccHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEe--cC--CceeEEE
Confidence 0000 00000 0 1111 12345688899999999999999999999999999986 44443 22 2233456
Q ss_pred EEecCccccCCCCHHHHHHHHHHCCCcc-CCCCCCCCCEEEEeccCC-CCHHHHHHHHccCChhHHHHhh
Q 001989 907 VDLRGLKNTAGIEPEDVAKRLMDYGFHG-PTMSWPVPGTLMIEPTES-ESKSWTGIVMLSSPSEKKLHRL 974 (985)
Q Consensus 907 v~~~~~~~~~g~~~~~v~~~L~~~Gi~~-~~~~~p~~~~lris~t~~-~t~eeId~~~~~~~l~~~~~~~ 974 (985)
+.+++ .+....++.++|.++|+.. ....+.....+|++++.. +|++||++ +++.|+++.+++
T Consensus 415 f~~~~----~~~~~~~l~~~L~~~g~~~~~~~~~~g~~~lR~~~~~~~tt~~di~~--~~~~i~~~~~~l 478 (481)
T 4e1o_A 415 FRLKG----PNSLTENVLKEIAKAGRLFLIPATIQDKLIIRFTVTSQFTTRDDILR--DWNLIRDAATLI 478 (481)
T ss_dssp EEESS----CHHHHHHHHHHHHHHCSSBCEEEEETTEEEEEEECCCTTCCHHHHHH--HHHHHHHHHHHH
T ss_pred EEeCC----chHHHHHHHHHHHhCCeEEEEeeEECCEEEEEEEeCCCCCCHHHHHH--HHHHHHHHHHHH
Confidence 66641 1123578999999998653 221111135799998855 58999999 778888887654
|
| >3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha beta protein, alternative splicing, catecholamine biosynthesis, lyase; HET: LLP; 1.75A {Drosophila melanogaster} SCOP: c.67.1.6 | Back alignment and structure |
|---|
Probab=99.94 E-value=3.6e-25 Score=261.12 Aligned_cols=397 Identities=13% Similarity=0.070 Sum_probs=256.5
Q ss_pred CCCccCCCCCCCCccccCCCCHHHHHHHHHHHhccccCcccccccccccccCCCc--c-ccccccccccccccCCCCchh
Q 001989 549 PSGLTRESPYLTHPVFNKYHTEHELLRYIHLLQSKELSLCHSMIPLGSCTMKLNA--T-TEMMPVTWPSFANIHPFAPAD 625 (985)
Q Consensus 549 p~~~~~~~~~~~~p~~~~~~se~e~~~~l~~l~~~~~~~~~~~~~lG~~t~~~~~--~-~~~~~~~~~~f~~~~p~~p~e 625 (985)
|..++..=+. .+| ..+.+.+++++.+.+....+........++|+-+..... . .++....+. .+...| +
T Consensus 35 p~~l~~~~~~-~~p--~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~n--~~~~~~---~ 106 (475)
T 3k40_A 35 PGYLKPLIPD-AAP--EKPEKWQDVMQDIERVIMPGVTHWHSPKFHAYFPTANSYPAIVADMLSGAIA--CIGFTW---I 106 (475)
T ss_dssp TTCSGGGSCS-SCC--SSCCCHHHHHHHHHHHTGGGCCCTTCTTBCCSSCCCCCHHHHHHHHHHHHHC--CCSSSC---C
T ss_pred HHHHHHhcCC-CCC--CCCCCHHHHHHHHHHHHhccCCCCCCcCceeeCCCCCcHHHHHHHHHHHHhC--ccccCc---c
Confidence 4455433332 577 688999999999999766654433456677752211111 1 112111111 111223 3
Q ss_pred hhhhHHHHHHHHHHHHHHHhCCCcc----------ceecCcHHHHHHHHHHHHHHHHHh----cCC-------CCCCEEE
Q 001989 626 QAQGYQEMFNNLGEWLCTITGFDSF----------SLQPNAGAAGEYAGLMVIRAYHKA----RGD-------HHRNVCI 684 (985)
Q Consensus 626 ~~~G~~~~~~e~~~~la~l~G~~~~----------~~~~~sGa~a~~a~l~air~~~~~----~g~-------~~~~~II 684 (985)
.+++..++.+++.+|+++++|.+.. .++.++|+++++.+++++|..... .+. .++++|+
T Consensus 107 ~~p~~~~lE~~v~~~l~~~~g~~~~~~~~~~~~~~gv~t~ggt~anl~al~~ar~~~~~~~~~~~~~~~~~~~~~~~~vi 186 (475)
T 3k40_A 107 ASPACTELEVVMMDWLGKMLELPAEFLACSGGKGGGVIQGTASESTLVALLGAKAKKLKEVKELHPEWDEHTILGKLVGY 186 (475)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCCGGGCGGGTSSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHEEEE
T ss_pred CCcHHHHHHHHHHHHHHHHhCCCchhccccCCCCCeEEcCchHHHHHHHHHHHHHHHHHHhhccCcccccccccCCeEEE
Confidence 3678889999999999999999852 366678898888888877654211 110 1245789
Q ss_pred EcCCCCcccHHHHHHCCcEEEEEcCCCCCCCCHHHHHHHHHhc---CCCEEEEEEEcCC-CccccccCHHHHHHHHHHcC
Q 001989 685 IPVSAHGTNPATAAMCGMKIVSVGTDAKGNINIEELRKAAEAN---RDNLSTLMVTYPS-THGVYEEGIDEICKIIHDNG 760 (985)
Q Consensus 685 v~~~~Hg~~~~~a~~~G~~vv~v~~d~~g~iD~e~L~~~i~~~---~~~t~~Vvv~~pn-~~G~i~~di~eI~~la~~~g 760 (985)
++...|.+..+.+...|++++.||+|++| +|+++|+++|++. ...+.+|+++.++ .+|.++ |+++|+++|+++|
T Consensus 187 ~s~~~H~s~~~~~~~~g~~~~~v~~d~~~-~d~~~L~~~i~~~~~~~~~~~~v~~~~~~t~~G~~~-~l~~I~~la~~~~ 264 (475)
T 3k40_A 187 CSDQAHSSVERAGLLGGVKLRSVQSENHR-MRGAALEKAIEQDVAEGLIPFYAVVTLGTTNSCAFD-YLDECGPVGNKHN 264 (475)
T ss_dssp EETTSCHHHHHHHHHHTCEEEEECCBTTB-CCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBC-CHHHHHHHHHHTT
T ss_pred ECCCchHHHHHHHHHcCCceEEEECCCCC-cCHHHHHHHHHHHHHCCCccEEEEEEecCCCCcCcC-CHHHHHHHHHHhC
Confidence 99999998888888999999999999889 9999999999732 1126778888875 599998 8999999999999
Q ss_pred CEEEEEccccccccCCC--C---CCccCCcEEEeCCcccccccCCCCCCceEEEEEccc-cc-CcC---CCCccccCCCC
Q 001989 761 GQVYMDGANMNAQVGLT--S---PGYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKH-LA-PFL---PSHPVVSTGGI 830 (985)
Q Consensus 761 alliVD~a~~~~~~~l~--~---pg~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~-l~-~~l---p~~~~g~~~~~ 830 (985)
+++|||+|+..+..... . .+-..+|++++++|||++.|+ |+|++++++. .. +.+ +.++.....+
T Consensus 265 ~~lhvD~A~~~~~~~~~~~~~~~~gi~~~Ds~~~~~hK~l~~p~-----g~g~l~~~~~~~l~~~~~~~~~yl~~~~~~- 338 (475)
T 3k40_A 265 LWIHVDAAYAGSAFICPEYRHLMKGIESADSFNFNPHKWMLVNF-----DCSAMWLKDPSWVVNAFNVDPLYLKHDMQG- 338 (475)
T ss_dssp CEEEEECTTGGGGGGSGGGGGGGTTGGGCSEEEECHHHHSSCCS-----SCEEEEESSGGGC------------------
T ss_pred CeEEEeHHhHHHHHhCHhhHHHhcCcccCCEEEECchhccCCCC-----ceEEEEEeCHHHHHHHhcCCccccCCCcCC-
Confidence 99999999853211100 0 111247999999999996553 5677888753 22 211 1111110000
Q ss_pred CCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc--cCCeeecCCCCceeeEEEEE
Q 001989 831 PAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK--HYPILFRGVNGTVAHEFIVD 908 (985)
Q Consensus 831 ~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~--g~~l~~~~~~~~~~~~~iv~ 908 (985)
..+. .....+..+ -...+...|+.+..+|.+|+.++.++..+++++++++|++ ++++.. + +..+.+.+.
T Consensus 339 ~~~~--~~~~~~~~s---r~~~~l~l~~al~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~l~~--~--~~~~iv~f~ 409 (475)
T 3k40_A 339 SAPD--YRHWQIPLG---RRFRALKLWFVLRLYGVENLQAHIRRHCNFAKQFGDLCVADSRFELAA--E--INMGLVCFR 409 (475)
T ss_dssp ------------CCC---GGGTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTEEESS--C--CBTTEEEEE
T ss_pred CCCC--cccccccCC---CcccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEec--C--CceEEEEEE
Confidence 0000 000011111 1122355688899999999999999999999999999986 444432 2 123345566
Q ss_pred ecCccccCCCCHHHHHHHHHHCCCccC-CCCCCCCCEEEEeccC-CCCHHHHHHHHccCChhHHHHhhcc
Q 001989 909 LRGLKNTAGIEPEDVAKRLMDYGFHGP-TMSWPVPGTLMIEPTE-SESKSWTGIVMLSSPSEKKLHRLKM 976 (985)
Q Consensus 909 ~~~~~~~~g~~~~~v~~~L~~~Gi~~~-~~~~p~~~~lris~t~-~~t~eeId~~~~~~~l~~~~~~~~~ 976 (985)
+++ .+....++.++|.++|+... ...+.-...+|++++. .+|++|||+ +++.|+++.+++.+
T Consensus 410 ~~~----~~~~~~~l~~~L~~~g~~~~~~~~~~g~~~lR~~~~~~~tt~~di~~--~~~~i~~~~~~~~~ 473 (475)
T 3k40_A 410 LKG----SNERNEALLKRINGRGHIHLVPAKIKDVYFLRMAICSRFTQSEDMEY--SWKEVSAAADEMEQ 473 (475)
T ss_dssp ESS----CHHHHHHHHHHHHHHTSCBCEEEEETTEEEEEEECCCTTCCHHHHHH--HHHHHHHHHHHHHT
T ss_pred eCC----chHHHHHHHHHHHhCCcEEEEeeEECCEEEEEEEeCCCCCCHHHHHH--HHHHHHHHHHHHhc
Confidence 541 11235789999999887542 1111113689999874 469999999 88899998877654
|
| >2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET: LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=3e-25 Score=264.01 Aligned_cols=390 Identities=14% Similarity=0.077 Sum_probs=250.2
Q ss_pred CCccccCCCCHHHHHHHHHHHhccccCcccccccccccccCCCccc---cccccccccccccCCCCchhhhhhHHHHHHH
Q 001989 560 THPVFNKYHTEHELLRYIHLLQSKELSLCHSMIPLGSCTMKLNATT---EMMPVTWPSFANIHPFAPADQAQGYQEMFNN 636 (985)
Q Consensus 560 ~~p~~~~~~se~e~~~~l~~l~~~~~~~~~~~~~lG~~t~~~~~~~---~~~~~~~~~f~~~~p~~p~e~~~G~~~~~~e 636 (985)
.+| +.+.++.+++++++++...+.... ...+|++.+....+.. ++.. .+.+.+.+.. +.+++..++..+
T Consensus 65 ~~p--~~~~~~~~~~~~~~~~~~~~~~~~-~p~~~~~~~~~~~~~~~~~~~l~----~~~n~~~~~~-~~~~~~~~le~~ 136 (504)
T 2okj_A 65 ELS--DHPESLEQILVDCRDTLKYGVRTG-HPRFFNQLSTGLDIIGLAGEWLT----STANTNMFTY-EIAPVFVLMEQI 136 (504)
T ss_dssp CCC--SSCCCHHHHHHHHHHHHHTSCCTT-CTTEESSSSCCCCHHHHHHHHHH----HHHCCBSSCT-TTCHHHHHHHHH
T ss_pred CCC--CCCCCHHHHHHHHHHHhhccCCCC-CCCEEEEccCCCCHHHHHHHHHH----HhhccCCCch-hhChHHHHHHHH
Confidence 566 588999999999999887765433 4567765332222211 1111 1222222222 445677778888
Q ss_pred HHHHHHHHhCCC--cc-ceecCcHHHHHHHHHHHHHHHH----HhcCCC-CCC-EEEEcCCCCcccHHHHHHCCc---EE
Q 001989 637 LGEWLCTITGFD--SF-SLQPNAGAAGEYAGLMVIRAYH----KARGDH-HRN-VCIIPVSAHGTNPATAAMCGM---KI 704 (985)
Q Consensus 637 ~~~~la~l~G~~--~~-~~~~~sGa~a~~a~l~air~~~----~~~g~~-~~~-~IIv~~~~Hg~~~~~a~~~G~---~v 704 (985)
+.+++++++|++ .. .++.++|++|++.++.+++.+. ...|.. .++ +|+++...|.++.+.++..|+ ++
T Consensus 137 ~~~~la~~~g~~~~~~~~~~t~ggtea~~~al~~~~~~~~~~~~~~G~~~~~~~~v~~s~~~h~s~~~~~~~~g~g~~~v 216 (504)
T 2okj_A 137 TLKKMREIVGWSSKDGDGIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVPKLVLFTSEQSHYSIKKAGAALGFGTDNV 216 (504)
T ss_dssp HHHHHHHHHTCCSSSCEEEEESSHHHHHHHHHHHHHHHHCTTHHHHCGGGSCCEEEEEETTSCTHHHHHHHHTTSCGGGE
T ss_pred HHHHHHHHhCCCCCCCCEEEeCCcHHHHHHHHHHHHHHHhhHHhhcCccccCCeEEEECCcchHHHHHHHHHcCCCcccE
Confidence 889999999998 43 3556778888877766665421 012210 014 788899999998888887776 89
Q ss_pred EEEcCCCCCCCCHHHHHHHHHhc---CCCEEEEEEEcCC-CccccccCHHHHHHHHHHcCCEEEEEccccccccC-----
Q 001989 705 VSVGTDAKGNINIEELRKAAEAN---RDNLSTLMVTYPS-THGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVG----- 775 (985)
Q Consensus 705 v~v~~d~~g~iD~e~L~~~i~~~---~~~t~~Vvv~~pn-~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~----- 775 (985)
+.||++++|.+|+++|+++|++. ..++++|++++|+ .+|.++ |+++|+++|+++|+|+|||+++..+...
T Consensus 217 ~~v~~~~~~~~d~~~L~~~i~~~~~~g~~~~~V~~~~~~~~tG~i~-~l~~I~~la~~~g~~lhvD~a~~~~~~~~~~~~ 295 (504)
T 2okj_A 217 ILIKCNERGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFD-PIQEIADICEKYNLWLHVDAAWGGGLLMSRKHR 295 (504)
T ss_dssp EEECBCTTSCBCHHHHHHHHHHHHHTTCEEEEEEECBSCSSSCCBC-CHHHHHHHHHHHTCEEEEEETTGGGGGGCTTTG
T ss_pred EEEecCCCCCCCHHHHHHHHHHHHHCCCCceEEEEeCCCCCCCCcC-CHHHHHHHHHHcCCEEEEehhhhhHHHhCHhhH
Confidence 99999888999999999999731 1158999999985 699998 8999999999999999999998533211
Q ss_pred CCCCCccCCcEEEeCCcccccccCCCCCCceEEEEEccc-ccC----cCCCCccccCCCC-CCCCCCCCCCCC-CCcchh
Q 001989 776 LTSPGYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKH-LAP----FLPSHPVVSTGGI-PAPEKSQPLGTI-AAAPWG 848 (985)
Q Consensus 776 l~~pg~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~-l~~----~lp~~~~g~~~~~-~~~~~~~~~~~i-~s~~~g 848 (985)
..-.+..++|++++++|||++.| .++|+++++++ +.. ..++++++...+. ... ......+ ++..++
T Consensus 296 ~~~~g~~~~D~i~~~~hK~~~~p-----~~~g~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~~~~rr~~ 368 (504)
T 2okj_A 296 HKLNGIERANSVTWNPHKMMGVL-----LQCSAILVKEKGILQGCNQMCAGYLFQPDKQYDVSY--DTGDKAIQCGRHVD 368 (504)
T ss_dssp GGGTTGGGCSEEEECTTSTTCCC-----SCCEEEEESSTTHHHHHHCCCCSSSCCSCCSSCGGG--CCGGGSSCSSCBCC
T ss_pred hhcCCcccCCEEEECchhhcCCC-----cceEEEEEECHHHHHHHhcCCCccccCCcccccCcC--CcccCCCCCCCCcc
Confidence 00122347999999999998543 25789999863 432 3344333211100 000 0000000 111111
Q ss_pred hhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc--cCCeeecCCCCceeeEEEEEecCccccCC---------
Q 001989 849 SALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK--HYPILFRGVNGTVAHEFIVDLRGLKNTAG--------- 917 (985)
Q Consensus 849 ~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~--g~~l~~~~~~~~~~~~~iv~~~~~~~~~g--------- 917 (985)
....|+.++.+|.+|+.++.++..++++++.++|++ ++++....+ +....+++...+-. ..+
T Consensus 369 ----~l~~~a~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~--p~~~~v~f~~~~~~-~~~~~~~~~~~~ 441 (504)
T 2okj_A 369 ----IFKFWLMWKAKGTVGFENQINKCLELAEYLYAKIKNREEFEMVFNGE--PEHTNVCFWYIPQS-LRGVPDSPQRRE 441 (504)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTEEESSSSC--CSSSCEEEEECCGG-GSSCCCCHHHHH
T ss_pred ----HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEecCC--CCeEEEEEEEeCcc-ccccccchhhHH
Confidence 234567788889999999999999999999999986 444432111 22223444432100 000
Q ss_pred ---CCHHHHHHHHHHCCCc-cCCCCCCC-CCEEEEecc-CCCCHHHHHHHHccCChhHHHHhh
Q 001989 918 ---IEPEDVAKRLMDYGFH-GPTMSWPV-PGTLMIEPT-ESESKSWTGIVMLSSPSEKKLHRL 974 (985)
Q Consensus 918 ---~~~~~v~~~L~~~Gi~-~~~~~~p~-~~~lris~t-~~~t~eeId~~~~~~~l~~~~~~~ 974 (985)
....++.++|.++|+. +....+.. .+.+|++++ ..+|++|||+ +++.|+++.+++
T Consensus 442 ~~~~~~~~l~~~L~~~G~~~~~~~~~~~~~~~lRis~~~~~~t~edi~~--~~~~l~~~~~~~ 502 (504)
T 2okj_A 442 KLHKVAPKIKALMMESGTTMVGYQPQGDKANFFRMVISNPAATQSDIDF--LIEEIERLGQDL 502 (504)
T ss_dssp HHTTHHHHHHHHHHHHTSCEEEEEEETTEEEEEEECCCCTTCCHHHHHH--HHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHhCCcEEEEeeEECCceEEEEEEeCCCCCCHHHHHH--HHHHHHHHHHHH
Confidence 0145788899999964 33211211 258999997 8999999999 778888776643
|
| >1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin; HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB: 1js6_A* 3rch_A* 3rbl_A 3rbf_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=7.6e-25 Score=259.29 Aligned_cols=387 Identities=14% Similarity=0.100 Sum_probs=249.6
Q ss_pred CCccccCCCCHHHHHHHHHHHhccccCcccccccccccccCCCc---cccccccccccccccCCCCchhhhhhHHHHHHH
Q 001989 560 THPVFNKYHTEHELLRYIHLLQSKELSLCHSMIPLGSCTMKLNA---TTEMMPVTWPSFANIHPFAPADQAQGYQEMFNN 636 (985)
Q Consensus 560 ~~p~~~~~~se~e~~~~l~~l~~~~~~~~~~~~~lG~~t~~~~~---~~~~~~~~~~~f~~~~p~~p~e~~~G~~~~~~e 636 (985)
.+| +++.++.++++.++++...+........++|+-+..... ..++.. ...+-+.+.. +.+++..++.++
T Consensus 45 ~~p--~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~----~~~n~~~~~~-~~~~~~~~le~~ 117 (486)
T 1js3_A 45 TAP--QEPDTFEDILQDVEKIIMPGVTHWHSPYFFAYFPTASSYPAMLADMLC----GAIGCIGFSW-AASPACTELETV 117 (486)
T ss_dssp SCC--SSCCCHHHHHHHHHHTTGGGCCCTTSTTBCSSSCCCCCHHHHHHHHHH----HHHCCCCSSG-GGCHHHHHHHHH
T ss_pred cCC--CCCCCHHHHHHHHHHHHhcCCCCCCCCCceEeCCCCCCHHHHHHHHHH----HHhCcCcccc-ccChhHHHHHHH
Confidence 567 588999999999999776665444456677753211111 111111 1112111111 345677888888
Q ss_pred HHHHHHHHhCCCcc----------ceecCcHHHHHHHHHHHHHHHHHh----c-CC------CCCCEEEEcCCCCcccHH
Q 001989 637 LGEWLCTITGFDSF----------SLQPNAGAAGEYAGLMVIRAYHKA----R-GD------HHRNVCIIPVSAHGTNPA 695 (985)
Q Consensus 637 ~~~~la~l~G~~~~----------~~~~~sGa~a~~a~l~air~~~~~----~-g~------~~~~~IIv~~~~Hg~~~~ 695 (985)
+.+|+++++|++.. .+++++|++|+..++.+++..... . |. .++..|+++...|.++.+
T Consensus 118 ~~~~la~l~g~~~~~~~~~~~~~~~v~t~ggTeA~~~al~~~~~~~~~~~~~~~gd~~~~~~~~~~~v~~s~~~h~s~~~ 197 (486)
T 1js3_A 118 MMDWLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTKVVRRLQAASPGLTQGAVLEKLVAYASDQAHSSVER 197 (486)
T ss_dssp HHHHHHHHTTCCGGGCCTTTCSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHEEEEEETTCCHHHHH
T ss_pred HHHHHHHHhCCCchhcccCCCCCCeEEcCCcHHHHHHHHHHHHHHHhhhhhccCccchhcccCCCEEEEECCCCcHHHHH
Confidence 99999999999853 356677888887777666542111 0 10 001137789999988888
Q ss_pred HHHHCCcEEEEEcCCCCCCCCHHHHHHHHHhcCCCE------EEEEEEcCC-CccccccCHHHHHHHHHHcCCEEEEEcc
Q 001989 696 TAAMCGMKIVSVGTDAKGNINIEELRKAAEANRDNL------STLMVTYPS-THGVYEEGIDEICKIIHDNGGQVYMDGA 768 (985)
Q Consensus 696 ~a~~~G~~vv~v~~d~~g~iD~e~L~~~i~~~~~~t------~~Vvv~~pn-~~G~i~~di~eI~~la~~~galliVD~a 768 (985)
.++..|++++.||++++|.+|+++|+++|+ +++ .+|++++|+ .+|.++ |+++|+++|+++|+++|||++
T Consensus 198 ~~~~~G~~v~~v~~d~~~~~d~~~L~~~i~---~~~~~g~~p~~vv~~~~~n~tG~~~-~l~~I~~la~~~~~~lhvD~a 273 (486)
T 1js3_A 198 AGLIGGVKLKAIPSDGKFAMRASALQEALE---RDKAAGLIPFFVVATLGTTSCCSFD-NLLEVGPICHEEDIWLHVDAA 273 (486)
T ss_dssp HHHHHTCEEEEECCCTTSCCCHHHHHHHHH---HHHHTTCEEEEEEEEBSCTTTCCBC-CHHHHHHHHHHTTCEEEEECT
T ss_pred HHHhCCCceEEeecCCCCCCCHHHHHHHHH---HHHhCCCCceEEEEeCCCCCCCCCC-CHHHHHHHHHHcCCEEEEehh
Confidence 888999999999998889999999999997 333 488889984 699998 999999999999999999999
Q ss_pred ccccccCCCC-----CCccCCcEEEeCCcccccccCCCCCCceEEEEEccc--ccCcC---CCCccccCCCC-CCCC-CC
Q 001989 769 NMNAQVGLTS-----PGYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKH--LAPFL---PSHPVVSTGGI-PAPE-KS 836 (985)
Q Consensus 769 ~~~~~~~l~~-----pg~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~--l~~~l---p~~~~g~~~~~-~~~~-~~ 836 (985)
+..+...... .+..++|++++++||+++.| +++|++++++. +.+.+ +.++.+..... .... ..
T Consensus 274 ~g~~~~~~~~~~~~~~g~~~adsi~~~~hK~~~~p-----~~~G~l~~~~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~ 348 (486)
T 1js3_A 274 YAGSAFICPEFRHLLNGVEFADSFNFNPHKWLLVN-----FDCSAMWVKRRTDLTGAFKLDPVYLKHSHQGSGLITDYRH 348 (486)
T ss_dssp TGGGGGGSTTTGGGGTTGGGCSEEEECHHHHSSCC-----SSCEEEEESCHHHHHGGGC------------CCSCCCGGG
T ss_pred hHHHHHHCHHHHHHhcCccccCeeEEchhhhcCCC-----cceEEEEEeCHHHHHHHhcCCchhhCCCcccccCCCCccc
Confidence 8532211111 12236899999999998654 36789998754 23332 22222110000 0000 00
Q ss_pred CCCCCCCCcchhhhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc--cCCeeecCCCCceeeEEEEEecCccc
Q 001989 837 QPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK--HYPILFRGVNGTVAHEFIVDLRGLKN 914 (985)
Q Consensus 837 ~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~--g~~l~~~~~~~~~~~~~iv~~~~~~~ 914 (985)
.... .+..+ .+...|+++..+|.+|++++.++..++++++.++|++ ++++.. + +..+.+.+.+.+
T Consensus 349 ~~~~--~~rr~----~~~~~~~al~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~--~--~~~~~v~f~~~~--- 415 (486)
T 1js3_A 349 WQLP--LGRRF----RSLKMWFVFRMYGVKGLQAYIRKHVQLSHEFEAFVLQDPRFEVCA--E--VTLGLVCFRLKG--- 415 (486)
T ss_dssp SSSC--SCCCC----THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTEEECS--C--CCSSEEEEEESS---
T ss_pred cCCC--CCCch----hHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeC--C--CceeEEEEEecC---
Confidence 0000 11111 1345678888899999999999999999999999986 344322 1 223345566541
Q ss_pred cCCCCHHHHHHHHHHCCCcc-CCCCCCCCCEEEEecc-CCCCHHHHHHHHccCChhHHHHhhccCC
Q 001989 915 TAGIEPEDVAKRLMDYGFHG-PTMSWPVPGTLMIEPT-ESESKSWTGIVMLSSPSEKKLHRLKMGR 978 (985)
Q Consensus 915 ~~g~~~~~v~~~L~~~Gi~~-~~~~~p~~~~lris~t-~~~t~eeId~~~~~~~l~~~~~~~~~~~ 978 (985)
.+....++.++|.++|+.. ....+...+.+|++++ ..+|++||++ +++.|+++++++....
T Consensus 416 -~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~lRi~~~~~~~t~~di~~--~~~~l~~~~~~~~~~~ 478 (486)
T 1js3_A 416 -SDGLNEALLERINSARKIHLVPCRLRGQFVLRFAICSRKVESGHVRL--AWEHIRGLAAELLAAE 478 (486)
T ss_dssp -CHHHHHHHHHHHHHHTSCBCEEEEETTEEEEEEECCCTTCCHHHHHH--HHHHHHHHHHHHHC--
T ss_pred -hHHHHHHHHHHHHhcCCEEEEEEEECCEEEEEEEeCCCCCCHHHHHH--HHHHHHHHHHHHHhhh
Confidence 0011478999999888763 2222222368999974 5689999999 8889999888776543
|
| >2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14, autoinhibition, substituted aldamine, lyase; HET: PLP; 1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A* 1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=8.4e-24 Score=247.95 Aligned_cols=347 Identities=12% Similarity=0.071 Sum_probs=241.7
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhcCCCc----cceecCCCCCCCCCcHHHHHHHHhCCccccccCCChhhHhhhHHHHHH
Q 001989 139 MKFSKFDEGLTESQMIEHMQKLASMNKV----YKSFIGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLL 214 (985)
Q Consensus 139 ~~lp~~~~~~se~e~~~~~~~l~~~n~~----~~~~lG~g~y~~~~p~~v~~~i~~~~~~~t~~~pyq~e~sqg~l~~i~ 214 (985)
++|| .+++++.++++++.++..++.. ...|.+ ++.++.+.+.+.+. +. -++++++.+++..+...
T Consensus 16 ~~lp--~~g~~~~~v~~~~~~~~~~~~~~~~~~~~f~~-----~~~~~~v~e~~~~a---~~-~~~~~~~~~~~~~~l~~ 84 (452)
T 2dgk_A 16 KRFP--LHEMRDDVAFQIINDELYLDGNARQNLATFCQ-----TWDDENVHKLMDLS---IN-KNWIDKEEYPQSAAIDL 84 (452)
T ss_dssp CSCC--CSCCCHHHHHHHHHHHGGGSCCCTTBCSCCSC-----CCCCHHHHHHHHHT---TT-CBTTCTTTCHHHHHHHH
T ss_pred CCCC--CCCCCHHHHHHHHHHHhcCCCCCccCCCCeeC-----CCchHHHHHHHHHH---hc-cCCCChhhChhHHHHHH
Confidence 4566 5789999999999999865533 123333 33444554444421 11 13455666789999999
Q ss_pred HHHHHHHHhcCCCCcc-----eeeccchHHHHHHHHHHhhhh-------cC---CCCEEEEcCCCChhHHHHHHHhhcCC
Q 001989 215 NFQTMIADLTGLPMSN-----ASLLDEGTAAAEAMAMCNNIQ-------KG---KKKTFIIASNCHPQTIDICITRADGF 279 (985)
Q Consensus 215 e~q~~ia~L~g~~~~~-----~sl~~~~ta~~ea~~~a~~~~-------~~---~g~~Vlv~~~~H~s~~~~~~~~a~~~ 279 (985)
++++++|+++|++..+ +.+++|||.++..++++.+.. .+ .+++||+++ .|+++...++. .
T Consensus 85 ~~~~~la~l~g~~~~~~~~~~~~~t~ggtea~~~al~a~~~~~~~~~~~~G~~~~~~~vi~~~-~h~~~~~~~~~----~ 159 (452)
T 2dgk_A 85 RCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWRWRKRMEAAGKPTDKPNLVCGP-VQICWHKFARY----W 159 (452)
T ss_dssp HHHHHHHHHTTCCCCTTSCCEEEEESSHHHHHHHHHHHHHHHHHHHHHHTTCCCSCCEEEESS-CCHHHHHHHHH----T
T ss_pred HHHHHHHHHhCCCcccccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEECC-CcHHHHHHHHH----c
Confidence 9999999999999775 889999997776665554310 11 136999999 99999988753 5
Q ss_pred CeEEEEeCch---------hhhc-cCCCEeEEEEEcC-CCCeeeccHHHHHHHHHhC------CcEEEEEecCccccCC-
Q 001989 280 DIKVVVSDLK---------DIDY-KSGDVCGVLVQYP-GTEGEVLDYGDFIKNAHAN------GVKVVMATDLLALTIL- 341 (985)
Q Consensus 280 gi~v~~v~~~---------~l~~-l~~~t~~V~v~~p-n~~G~v~di~~I~~~a~~~------galliV~a~~~~lg~l- 341 (985)
|++++.++.+ +|++ ++++|++|++++| |++|.++|+++|+++||++ |++++||+ .++.+..
T Consensus 160 G~~v~~v~~~~~~~~~d~~~l~~~i~~~t~~v~~~~~~n~tG~~~~l~~I~~ia~~~~~~~~~~~~l~vD~-a~~~~~~~ 238 (452)
T 2dgk_A 160 DVELREIPMRPGQLFMDPKRMIEACDENTIGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGIDIDMHIDA-ASGGFLAP 238 (452)
T ss_dssp TCEEEECCCBTTBCSCCHHHHHHHCCTTEEEEECBBSCTTTCBBCCHHHHHHHHHHHHHHHCCCCCEEEEC-TTGGGTHH
T ss_pred CceEEEEecCCCCCeECHHHHHHHHhhCCEEEEEEcCCcCCcccCCHHHHHHHHHHHhhccCCCCcEEEEc-ccHHHHHH
Confidence 8899888653 3555 7889999999998 6899999999999999995 99999954 2332211
Q ss_pred --CCC-----CcccceEEEecCccccccCCCCCCcEEEEEEchh-hH-hcCC---CceeeeeecCCCCcceeeecccccc
Q 001989 342 --KPP-----GELGADIVVGSAQRFGVPMGYGGPHAAFLATSQE-YK-RMMP---GRIVGVSIDSSGKPALRVAMQTREQ 409 (985)
Q Consensus 342 --~~~-----~~~GaDi~v~s~k~lg~P~~~GGP~~G~l~~~~~-~~-~~lp---~~~vG~t~d~~g~~~~~l~l~tre~ 409 (985)
..+ ...|+|++++++++++ ++|+++|+++++++ ++ +.+. +.+ | +.. ....+
T Consensus 239 ~~~~~~~~~~~~~~~d~~~~~~hK~~----~~~~~~G~~~~~~~~~~~~~~~~~~~~~-~------~~~-~~~~~----- 301 (452)
T 2dgk_A 239 FVAPDIVWDFRLPRVKSISASGHKFG----LAPLGCGWVIWRDEEALPQELVFNVDYL-G------GQI-GTFAI----- 301 (452)
T ss_dssp HHCTTCCCSTTSTTEEEEEEETTTTT----CCCSSCEEEEESSGGGSCGGGCEEECCT-T------CCE-EECCS-----
T ss_pred hhCccchhhcCCCCCcEEEECccccc----CCCCCeEEEEEcCHHHHHHHhccCcccc-C------CCC-CCccc-----
Confidence 111 2348999999996564 45678899999754 33 3331 111 1 000 00000
Q ss_pred cccccccCCCccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCC----CCcceEEEecCC-
Q 001989 410 HIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGL----PFFDTVKVKCAD- 484 (985)
Q Consensus 410 ~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~----~~~~~~~~~~~~- 484 (985)
.+|.+. ....++.++ +..+|.+|++++.++..++++++.+.|+++++++++.+ +.++.+.|+.++
T Consensus 302 -----~~~r~~---~~~~~~~aa--l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~~~~v~f~~~~~ 371 (452)
T 2dgk_A 302 -----NFSRPA---GQVIAQYYE--FLRLGREGYTKVQNASYQVAAYLADEIAKLGPYEFICTGRPDEGIPAVCFKLKDG 371 (452)
T ss_dssp -----CCSCBC---HHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSEEEEEECCTTTBSSEEEEEECTT
T ss_pred -----CCCChh---HHHHHHHHH--HHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEecCCCCCCCeEEEEEEecCc
Confidence 111111 122333333 35668899999999999999999999999966998742 456677776543
Q ss_pred ------HHHHHHHHHHcCceeeee--c-----CCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 485 ------AHAIASAAYKIEMNLRVV--D-----SNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 485 ------~~~v~~~L~~~GI~~~~~--~-----~~~lris~t~~~t~edId~li~aL~~ 529 (985)
..++.++|.++||.++.. . .+.+|+|++..+|++|+|+|+++|++
T Consensus 372 ~~~~~~~~~l~~~L~~~Gi~v~~~~~~~~~~~~~~lRis~~~~~t~e~id~li~~l~~ 429 (452)
T 2dgk_A 372 EDPGYTLYDLSERLRLRGWQVPAFTLGGEATDIVVMRIMCRRGFEMDFAELLLEDYKA 429 (452)
T ss_dssp CCCSCCHHHHHHHHHHTTCBCCEEECSTTCTTCEEEEEECCTTCCHHHHHHHHHHHHH
T ss_pred ccccCCHHHHHHHHHhcCCeeeeeeCCcccCCeEEEEEEecCCCCHHHHHHHHHHHHH
Confidence 389999999999976432 1 24799999999999999999999974
|
| >3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase, pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.2e-23 Score=247.59 Aligned_cols=378 Identities=12% Similarity=0.076 Sum_probs=253.8
Q ss_pred CCccccCCCCHHHHHHHHHHHhccccCcccccccccc-cccCCCccc-cccccccccccccCCCCchhhhhhHHHHHHHH
Q 001989 560 THPVFNKYHTEHELLRYIHLLQSKELSLCHSMIPLGS-CTMKLNATT-EMMPVTWPSFANIHPFAPADQAQGYQEMFNNL 637 (985)
Q Consensus 560 ~~p~~~~~~se~e~~~~l~~l~~~~~~~~~~~~~lG~-~t~~~~~~~-~~~~~~~~~f~~~~p~~p~e~~~G~~~~~~e~ 637 (985)
.+| ..+.+..++++.++.....+- +...++.+ +++...+.. +.+...... ++. .+ +.+++..++.+++
T Consensus 31 ~~p--~~~~~~~~~~~~~~~~i~l~g---np~~~l~s~~t~~~~~~v~~~l~~~~~~--~~~--~~-~~~p~~~~le~~~ 100 (502)
T 3hbx_A 31 KMP--ENSIPKEAAYQIINDELMLDG---NPRLNLASFVTTWMEPECDKLIMSSINK--NYV--DM-DEYPVTTELQNRC 100 (502)
T ss_dssp SCC--SSCCCHHHHHHHHHHHGGGSC---CGGGBTTCCSCCCCCHHHHHHHHHTTTC--BTT--CT-TTCHHHHHHHHHH
T ss_pred CCC--CCCCCHHHHHHHHHHHhccCC---CCCceeccccCCCCCHHHHHHHHHHhcc--CCC--Ch-hcChhHHHHHHHH
Confidence 466 578899999999887654331 11223443 444443322 111111111 111 11 2356788889999
Q ss_pred HHHHHHHhCCC--cc----ceecCcHHHHHHHHHHHHHH-HHHh---cCCC-CCCEEEEcCCCCcccHHHHHHCCcEEEE
Q 001989 638 GEWLCTITGFD--SF----SLQPNAGAAGEYAGLMVIRA-YHKA---RGDH-HRNVCIIPVSAHGTNPATAAMCGMKIVS 706 (985)
Q Consensus 638 ~~~la~l~G~~--~~----~~~~~sGa~a~~a~l~air~-~~~~---~g~~-~~~~IIv~~~~Hg~~~~~a~~~G~~vv~ 706 (985)
++++++++|++ .. .+++++|++++..++++++. +... .|.. .+++||++...|.++...++..|++++.
T Consensus 101 ~~~la~l~g~~~~~~~~~~g~~t~ggtea~~~a~~a~~~~~~~~~~~~G~~~~~~~vi~~~~~h~s~~~~~~~~G~~~~~ 180 (502)
T 3hbx_A 101 VNMIAHLFNAPLEEAETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPVDKPNIVTGANVQVCWEKFARYFEVELKE 180 (502)
T ss_dssp HHHHHHHTTCCCCSSCCCEEEEESSHHHHHHHHHHHHHHHHHHHHHHTTCCCSCCEEEEETTCCHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHhCCCcccccCCcceecCcHHHHHHHHHHHHHHHHhHHHHhcCCCCCCcEEEEcCCchHHHHHHHHHcCceeEE
Confidence 99999999998 21 23467788877666555543 2111 1321 1238999999898888888999999999
Q ss_pred EcCCCC-CCCCHHHHHHHHHhcCCCEEEEEEEcCC-CccccccCHHHHHHHHHHc------CCEEEEEccccccccCC-C
Q 001989 707 VGTDAK-GNINIEELRKAAEANRDNLSTLMVTYPS-THGVYEEGIDEICKIIHDN------GGQVYMDGANMNAQVGL-T 777 (985)
Q Consensus 707 v~~d~~-g~iD~e~L~~~i~~~~~~t~~Vvv~~pn-~~G~i~~di~eI~~la~~~------galliVD~a~~~~~~~l-~ 777 (985)
||++++ +.+|+++|+++|+ ++|++|++++|+ ++|.++ |+++|+++|+++ |+++|||+|+.....++ .
T Consensus 181 v~~~~~~~~~d~~~l~~~i~---~~t~~v~~~~~~n~tG~~~-~l~~I~~ia~~~~~~~~~~~~l~VD~A~~~~~~p~~~ 256 (502)
T 3hbx_A 181 VKLSEGYYVMDPQQAVDMVD---ENTICVAAILGSTLNGEFE-DVKLLNDLLVEKNKETGWDTPIHVDAASGGFIAPFLY 256 (502)
T ss_dssp ECCBTTBCSCCHHHHHHHCC---TTEEEEEEEBSCTTTCCBC-CHHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHC
T ss_pred EecCCCcCcCCHHHHHHHHh---hCCEEEEEecCCCCCCccc-CHHHHHHHHHHhhhccCCCCeEEEECCccchhhhhhC
Confidence 999876 8999999999998 789999999985 699998 899999999999 99999999985221100 1
Q ss_pred C-----CCccCCcEEEeCCcccccccCCCCCCceEEEEEcc-ccc-CcC---CCCccccCCCCCCCCCCCCCCCCCCcch
Q 001989 778 S-----PGYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKK-HLA-PFL---PSHPVVSTGGIPAPEKSQPLGTIAAAPW 847 (985)
Q Consensus 778 ~-----pg~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~-~l~-~~l---p~~~~g~~~~~~~~~~~~~~~~i~s~~~ 847 (985)
. ....++|++++++||++. +++|+|++++++ ... ..+ +.+. +... .. ..+..+..
T Consensus 257 ~~~~~~~~~~~~D~v~~s~hK~l~-----~p~g~G~~~~~~~~~l~~~~~~~~~yl-~~~~------~~---~~~~~sr~ 321 (502)
T 3hbx_A 257 PELEWDFRLPLVKSINVSGHKYGL-----VYAGIGWVIWRNKEDLPEELIFHINYL-GADQ------PT---FTLNFSKG 321 (502)
T ss_dssp TTCCCSTTSTTEEEEEEETTTTTC-----CCSSCEEEEESSGGGSCGGGCEEECSS-SSCE------EE---CCSCCSCB
T ss_pred cccccccCCCCceEEEECcccccC-----CCCCeEEEEEeCHHHhhHHhccCcccc-cCCC------CC---ccccCCch
Confidence 1 123479999999999974 345788888774 332 111 1111 1000 00 00111111
Q ss_pred hhhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhcc--CCeeecCCCCceeeEEEEEecCccccCCCCHHHHHH
Q 001989 848 GSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKH--YPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAK 925 (985)
Q Consensus 848 g~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~g--~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~ 925 (985)
+ ..+.+.|+.+..+|.+|+.++.++..+++++|+++|++. +++... .+..+.+.+.+++ ..+.+..++.+
T Consensus 322 ~--~~~~a~~~al~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~---~~~~~~v~f~~~~---~~~~~~~~l~~ 393 (502)
T 3hbx_A 322 S--SQVIAQYYQLIRLGHEGYRNVMENCRENMIVLREGLEKTERFNIVSK---DEGVPLVAFSLKD---SSCHTEFEISD 393 (502)
T ss_dssp S--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEECSC---SSSSSEEEEEESS---CSSCCHHHHHH
T ss_pred H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeC---CCCceEEEEEecC---CCcCCHHHHHH
Confidence 1 123456788899999999999999999999999999872 444322 1223445666642 11356779999
Q ss_pred HHHHCCCccCCCCCCC----CCEEEEeccCCCCHHHHHHHHccCChhHHHHhhcc
Q 001989 926 RLMDYGFHGPTMSWPV----PGTLMIEPTESESKSWTGIVMLSSPSEKKLHRLKM 976 (985)
Q Consensus 926 ~L~~~Gi~~~~~~~p~----~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~~~ 976 (985)
+|.++||.+.....|. ...+||+++..+|.||+|+ +++.|+++++.++.
T Consensus 394 ~L~~~Gi~v~~~~~p~~~~~~~~lRisv~~~~t~edid~--li~~L~~~l~~l~~ 446 (502)
T 3hbx_A 394 MLRRYGWIVPAYTMPPNAQHITVLRVVIREDFSRTLAER--LVIDIEKVMRELDE 446 (502)
T ss_dssp HHHTTTCBCCEEECCTTCTTCEEEEEECCTTCCHHHHHH--HHHHHHHHHHHHHT
T ss_pred HHHhCCcEEeeccCCcccCCceEEEEEeCCCCCHHHHHH--HHHHHHHHHHHHHh
Confidence 9999999986544331 2579999999999999999 88899999887765
|
| >2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate decarboxylase; structural genomics, APC91511.1, glutamate decarboxylase; HET: MSE; 1.81A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.92 E-value=3.9e-23 Score=245.29 Aligned_cols=382 Identities=15% Similarity=0.145 Sum_probs=244.1
Q ss_pred cCCCCHHHHHHHHHHHhccccCccccccccccc-ccCCCccc--cccccccccccccCCCCchhhhhhHHHHHHHHHHHH
Q 001989 565 NKYHTEHELLRYIHLLQSKELSLCHSMIPLGSC-TMKLNATT--EMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWL 641 (985)
Q Consensus 565 ~~~~se~e~~~~l~~l~~~~~~~~~~~~~lG~~-t~~~~~~~--~~~~~~~~~f~~~~p~~p~e~~~G~~~~~~e~~~~l 641 (985)
+.+.+.+++++.+.+..-.+.....+..|||+. ++...+.. ++..... ..+.+.| +.+++..++..++++++
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~v~~~~~~~~~--n~~~~~~---~~~~~~~~le~~~~~~l 149 (497)
T 2qma_A 75 NKNAPLKSVIDDVAELVAKNAIFTQHPDCIAHLHTPPLMPAVAAEAMIAAL--NQSMDSW---DQASSATYVEQKVVNWL 149 (497)
T ss_dssp SCCCCHHHHHHHHHHHTTTTSCCTTSTTBCSSSCCCCBHHHHHHHHHHHHH--CCCTTCG---GGCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhcCCCCCCCCCeeEeCCCCCcHHHHHHHHHHHhh--cccccch---hhChHHHHHHHHHHHHH
Confidence 467788999999987554444333456788852 22222221 1111111 1112222 33567778888889999
Q ss_pred HHHhCCCc--cceecCcHHHHHHHHHHHHHHHHH---------hcCCCC--CC-EEEEcCCCCcccHHHHHHCCc---EE
Q 001989 642 CTITGFDS--FSLQPNAGAAGEYAGLMVIRAYHK---------ARGDHH--RN-VCIIPVSAHGTNPATAAMCGM---KI 704 (985)
Q Consensus 642 a~l~G~~~--~~~~~~sGa~a~~a~l~air~~~~---------~~g~~~--~~-~IIv~~~~Hg~~~~~a~~~G~---~v 704 (985)
++++|.+. ..++.++|++|++.++.++|.+.. ..|... ++ +|+++...|.++...+...|. ++
T Consensus 150 a~~~g~~~~~~~~~t~ggt~a~~~al~~ar~~~~~~~~~~~~~~~G~~~~~g~~~v~~s~~~h~s~~~~~~~~g~g~~~v 229 (497)
T 2qma_A 150 CDKYDLSEKADGIFTSGGTQSNQMGLMLARDWIADKLSGHSIQKLGLPDYADKLRIVCSKKSHFTVQKSASWMGLGEKAV 229 (497)
T ss_dssp HHHTTCCTTCEEEEESSHHHHHHHHHHHHHHHHHHHHHCCCHHHHCSCGGGGGEEEEEETTSCTHHHHHHHHTTSCGGGE
T ss_pred HHHhCCCCCCCeEEcCCchHHHHHHHHHHHHHHHHhhcccchhhcccccccCCeEEEECCCchHHHHHHHHHcCCCcccE
Confidence 99999864 346667888888888887765322 123211 34 788899899988888888766 89
Q ss_pred EEEcCCCCCCCCHHHHHHHHHhcC-CC--EEEEEEEcCC-CccccccCHHHHHHHHHHcCCEEEEEccccccccCCC-C-
Q 001989 705 VSVGTDAKGNINIEELRKAAEANR-DN--LSTLMVTYPS-THGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLT-S- 778 (985)
Q Consensus 705 v~v~~d~~g~iD~e~L~~~i~~~~-~~--t~~Vvv~~pn-~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~-~- 778 (985)
+.+|+++++.+|+++|+++|++.. .. +.+|++++++ .+|.++ |+++|+++|+++|+++|||+++..+..... .
T Consensus 230 ~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~vv~~~~~~~tG~~~-~l~~I~~l~~~~~~~l~vD~a~~~~~~~~~~~~ 308 (497)
T 2qma_A 230 MTVDANADGTMDITKLDEVIAQAKAEGLIPFAIVGTAGTTDHGAID-DLDFIADMAVKHDMWMHVDGAYGGALILSSHKS 308 (497)
T ss_dssp EEECBCTTSSBCGGGHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBC-CHHHHHHHHHHHTCEEEEEETTGGGGGGSTTGG
T ss_pred EEEecCCCCcCCHHHHHHHHHHHHHCCCcceEEEEcCCCCCCCCCC-CHHHHHHHHHHcCCEEEEehhhhHHHHhCcchH
Confidence 999998889999999999997320 12 4488888875 599998 899999999999999999999853322111 0
Q ss_pred --CCccCCcEEEeCCcccccccCCCCCCceEEEEEcccc-cCcCC---CCccccCCCCCCCCCCCCCCCCCCcchhhhHH
Q 001989 779 --PGYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHL-APFLP---SHPVVSTGGIPAPEKSQPLGTIAAAPWGSALI 852 (985)
Q Consensus 779 --pg~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l-~~~lp---~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~ 852 (985)
.+-.++|++++++||||+.| .++|+++++++. .+.+. .++.+. .+....-..... . ++.. ..
T Consensus 309 ~~~gi~~~D~i~~s~hK~l~~p-----~~~G~l~~~~~~~~~~~~~~~~yl~~~-~~~~~~~~~~~~-~-~~r~----~~ 376 (497)
T 2qma_A 309 RLKGVERAHSISVDFHKLFYQT-----ISCGALLVNDKSNFKFLLHHADYLNRE-HDELPNLVDKSI-A-TTKR----FD 376 (497)
T ss_dssp GGTTGGGCSEEEEETTTTTCCC-----SSCEEEEESCGGGGGGGCC----------------------C-CSCC----CT
T ss_pred hhcCcccCCEEEEcchhccCCC-----cceEEEEEeCHHHHHHhcCCchhcCCc-cccCCCccccCC-C-CCCc----hh
Confidence 11126899999999998643 367888887542 32221 111000 000000000000 0 0000 11
Q ss_pred HHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc--cCCeeecCCCCceeeEEEEEecCccccCCCC----HHHHHHH
Q 001989 853 LPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK--HYPILFRGVNGTVAHEFIVDLRGLKNTAGIE----PEDVAKR 926 (985)
Q Consensus 853 ~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~--g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~----~~~v~~~ 926 (985)
+...|+.++.+|.+|+.++.++..++++++.+.|++ ++++.. .+ ....+.+.+.+ .+.. ..++.++
T Consensus 377 al~~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~-~~---~~~~v~f~~~~----~~~~~~~l~~~l~~~ 448 (497)
T 2qma_A 377 ALKVFMTMQNVGPKALGDMYDHLLAQTLEVADMIRTNDQFELLA-EP---SLSTVLFRATH----ETADLDELNKALRLE 448 (497)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHTCTTEEECS-CC---SSSEEEEEECC----SSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhhCCCeEEEc-CC---CceEEEEEEcC----CccCHHHHHHHHHHH
Confidence 234578889999999999999999999999999987 344322 22 12234555531 1112 2467788
Q ss_pred HHHCCCccCCC-CCCCCCEEEEec-cCCCCHHHHHHHHccCChhHHHHhh
Q 001989 927 LMDYGFHGPTM-SWPVPGTLMIEP-TESESKSWTGIVMLSSPSEKKLHRL 974 (985)
Q Consensus 927 L~~~Gi~~~~~-~~p~~~~lris~-t~~~t~eeId~~~~~~~l~~~~~~~ 974 (985)
|.++|+.+... .+...+.+|+++ +..+|++|||+ +++.|+++++++
T Consensus 449 l~~~G~~~~~~~~~~g~~~lRis~~~~~~t~edi~~--~~~~l~~~~~~~ 496 (497)
T 2qma_A 449 ALTRGIAVLGETIVDGKTALKFTILNPCLTTSDFES--LLSKINMLAVEL 496 (497)
T ss_dssp HHHHTSCBCEEEEETTEEEEEEECCCTTCCHHHHHH--HHHHHHHHHHHC
T ss_pred HHhCCCEEEEeeEECCEEEEEEEecCCCCCHHHHHH--HHHHHHHHHHhh
Confidence 88899886431 111135899998 88999999999 778888877653
|
| >2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, PYR 5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis} SCOP: c.67.1.9 | Back alignment and structure |
|---|
Probab=99.91 E-value=1.5e-23 Score=246.02 Aligned_cols=358 Identities=15% Similarity=0.093 Sum_probs=233.0
Q ss_pred CCccccCCCCHHHHHHHHHHHhccccCcccccccccc-cccCCCccc-cc-c---------cc-ccccccccCCCCchhh
Q 001989 560 THPVFNKYHTEHELLRYIHLLQSKELSLCHSMIPLGS-CTMKLNATT-EM-M---------PV-TWPSFANIHPFAPADQ 626 (985)
Q Consensus 560 ~~p~~~~~~se~e~~~~l~~l~~~~~~~~~~~~~lG~-~t~~~~~~~-~~-~---------~~-~~~~f~~~~p~~p~e~ 626 (985)
.+| ..|+++.++.+.++++...+. .++|.. ++.+.+... +. . +. ....+.+.+| .. ..
T Consensus 57 ~lp--~~g~~~~~i~~~~~~~~~~~~-----~~yld~aa~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~ 127 (456)
T 2z67_A 57 KIP--ENGIDDEKIKLFLKFLSMMDT-----DKDPKSVRIGEREARTYSKIHEELSSGFCHGIGRSGNLVDPQP-KA-SG 127 (456)
T ss_dssp SCC--SSCCCHHHHHHHHHHHHTTBG-----GGCTTCEECSSCCCCCSCHHHHHHTTTCTTCBSBTTBTTSCCT-TB-HH
T ss_pred CCC--CCCCCHHHHHHHHHHHHhccc-----cccccccccccccccccccccCccccccCCCccHHHHHHhhCc-cc-cc
Confidence 356 478899999999888876542 245542 333333221 10 0 00 0112222233 11 33
Q ss_pred hhhHHHHHHHHHHHHHHHhCCCccceecCcHH-HHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEE
Q 001989 627 AQGYQEMFNNLGEWLCTITGFDSFSLQPNAGA-AGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIV 705 (985)
Q Consensus 627 ~~G~~~~~~e~~~~la~l~G~~~~~~~~~sGa-~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv 705 (985)
+++..++.+++++++++++|++...++.++|+ .++.+++++++.+. ++++||+++..|.+....++..|++++
T Consensus 128 ~~~~~~~~~~~~~~la~~~g~~~~~~~t~g~te~a~~~al~~~~~~~------~~~~vi~~~~~h~s~~~~~~~~G~~~~ 201 (456)
T 2z67_A 128 ASIMYALTNKILESFFKQLGLNVHAIATPISTGMSISLCLSAARKKY------GSNVVIYPYASHKSPIKAVSFVGMNMR 201 (456)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCCEEEEESSCHHHHHHHHHHHHHHHH------CCCEEEEECCCCHHHHHHHHHTTCEEE
T ss_pred CcHHHHHHHHHHHHHHHHcCCCCCEEEeCcHHHHHHHHHHHHHHHhc------CCCEEEEECCCcHHHHHHHHHcCCCce
Confidence 44678888999999999999986434445555 45544555544321 356788888889888888888999999
Q ss_pred EEcC---CCCCCCCHHHHHHHH-Hhc-CCCEEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCCC--
Q 001989 706 SVGT---DAKGNINIEELRKAA-EAN-RDNLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLT-- 777 (985)
Q Consensus 706 ~v~~---d~~g~iD~e~L~~~i-~~~-~~~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~-- 777 (985)
.++. +++|.+|+++|+++| +.. ++++.+|++++| |.+|.++ |+++|+++|+++|+++|||+|+.....+..
T Consensus 202 ~v~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~vv~~~~nn~tG~i~-~l~~I~~la~~~g~~v~vD~A~~~~~~g~~~~ 280 (456)
T 2z67_A 202 LVETVLDGDRVYVPVEDIENAIKKEIELGNRPCVLSTLTFFPPRNSD-DIVEIAKICENYDIPHIINGAYAIQNNYYLEK 280 (456)
T ss_dssp EECCEEETTEEECCHHHHHHHHHHHHHTTCCEEEEEESSCCTTBCCC-CHHHHHHHHHHHTCCEEEECTTTTTCHHHHHH
T ss_pred EEEEeccCCCCCcCHHHHHHHHHHHhhCCCeEEEEEeCCCCCCCCcC-CHHHHHHHHHHcCCcEEEECcchHHHHHhhHH
Confidence 9987 567899999999999 421 247888888999 4699998 899999999999999999987632111110
Q ss_pred CCCcc--CCcEEEeCCcccccccCCCCCCceEEEEEc-ccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHH
Q 001989 778 SPGYI--GADVCHLNLHKTFCIPHGGGGPGMGPIGVK-KHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILP 854 (985)
Q Consensus 778 ~pg~~--g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~-~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~ 854 (985)
....+ ++|++++|+||+++ +++|+|+++++ +++.+.+...+.|. ... .. +.
T Consensus 281 ~~~~~~~~~D~~~~s~hK~~~-----~p~g~G~l~~~~~~~~~~l~~~~~g~---------------~~~----~~--~~ 334 (456)
T 2z67_A 281 LKKAFKYRVDAVVSSSDKNLL-----TPIGGGLVYSTDAEFIKEISLSYPGR---------------ASA----TP--VV 334 (456)
T ss_dssp HHHHHTSCCSEEEEEHHHHHC-----CCSSCEEEEESCHHHHHHHHTTSCSC---------------BCS----HH--HH
T ss_pred HHHhhCCCCCEEEEcCCCCcC-----CCCCeEEEEEcCHHHHhhcCcCCCCC---------------CCC----CH--HH
Confidence 01112 79999999999874 34578999995 45544332211110 001 11 33
Q ss_pred HHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhccC---CeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCC
Q 001989 855 ISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHY---PILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYG 931 (985)
Q Consensus 855 ~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~g~---~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~G 931 (985)
..|+.+..++.+|++++.++..++++++.++|++.. ++...++. +.+.+.+.. .+ ...++.++|.++|
T Consensus 335 ~~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~v~~~~----~~v~~~~~~----~~-~~~~l~~~L~~~g 405 (456)
T 2z67_A 335 NTLVSLLSMGSKNYLELVKNQKNSKKLLDELLNDLSKKTGGKFLDVE----SPIASCISV----NS-DPVEIAAKLYNLR 405 (456)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCBCCCC----CSSEEEEEC----SS-CHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCEecCCC----CeEEEEEec----cc-HHHHHHHHHHHcC
Confidence 456777888899999999999999999999997631 22222221 223344410 01 1578999999998
Q ss_pred Cc---cC-------CCCC-C-CCCEEEEeccCCCCHHHHHHHHccCChhHH
Q 001989 932 FH---GP-------TMSW-P-VPGTLMIEPTESESKSWTGIVMLSSPSEKK 970 (985)
Q Consensus 932 i~---~~-------~~~~-p-~~~~lris~t~~~t~eeId~~~~~~~l~~~ 970 (985)
+. +. ...+ + ..+.+|+|++..+|++|||+ +++.|+++
T Consensus 406 i~~~rv~~~~g~f~G~~~~~~~~~~vr~s~~~~~t~eeid~--~l~~L~~~ 454 (456)
T 2z67_A 406 VTGPRGIKKTDHFGNCYLGTYTHDYIVMNAAIGVRTEDIVN--SVSKLEKI 454 (456)
T ss_dssp EESCEEECTTCHHHHTCSSCCSCCEEEEECCTTCCHHHHHH--HHHHHHTC
T ss_pred CCcceEEeecCccccccccccCcchhhhhhhcCCCHHHHHH--HHHHHHHH
Confidence 62 21 0111 1 14799999999999999999 66666654
|
| >4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=7.6e-23 Score=232.52 Aligned_cols=315 Identities=12% Similarity=0.114 Sum_probs=216.1
Q ss_pred hhhHHHHHHHHHHHHHHHhCCCccc-eecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHH---HCCc
Q 001989 627 AQGYQEMFNNLGEWLCTITGFDSFS-LQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAA---MCGM 702 (985)
Q Consensus 627 ~~G~~~~~~e~~~~la~l~G~~~~~-~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~---~~G~ 702 (985)
..+..+..+++++++++++|.+... ++.++|++|+..++.++.... ..++++||++...|+++...+. ..|+
T Consensus 38 ~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~~~a~~~~~~~~~~~~----~~~gd~vi~~~~~~~~~~~~~~~~~~~g~ 113 (382)
T 4hvk_A 38 GFKAREAVQEAREKVAKLVNGGGGTVVFTSGATEANNLAIIGYAMRN----ARKGKHILVSAVEHMSVINPAKFLQKQGF 113 (382)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCTTEEEEEESSHHHHHHHHHHHHHHHH----GGGCCEEEEETTCCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHcCCCcCeEEEECCchHHHHHHHHHhhhhh----cCCCCEEEECCCCcHHHHHHHHHHHhcCC
Confidence 3566778889999999999998643 556677777765555443111 0267899999988877765543 4699
Q ss_pred EEEEEcCCCCCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCc
Q 001989 703 KIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGY 781 (985)
Q Consensus 703 ~vv~v~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~ 781 (985)
+++.+|+++++.+|+++|+++++ +++++|++++| |++|.+. |+++|.++|+++|+ +++|++|..+...+ ....
T Consensus 114 ~~~~v~~~~~~~~d~~~l~~~i~---~~~~~v~~~~~~nptG~~~-~~~~i~~l~~~~~~-li~D~a~~~~~~~~-~~~~ 187 (382)
T 4hvk_A 114 EVEYIPVGKYGEVDVSFIDQKLR---DDTILVSVQHANNEIGTIQ-PVEEISEVLAGKAA-LHIDATASVGQIEV-DVEK 187 (382)
T ss_dssp EEEEECBCTTSCBCHHHHHHHCC---TTEEEEECCSBCTTTCBBC-CHHHHHHHHSSSSE-EEEECTTTBTTBCC-CHHH
T ss_pred EEEEeccCCCCCcCHHHHHHHhc---cCceEEEEECCCCCceeeC-CHHHHHHHHHHcCE-EEEEhHHhcCCCCC-Cchh
Confidence 99999999889999999999997 78999999998 5799998 89999999999999 99999986432221 2234
Q ss_pred cCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHH
Q 001989 782 IGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIA 861 (985)
Q Consensus 782 ~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~ 861 (985)
+++|++++|+||++ |++|+|+++++++. .+.....+.... .....++.+ ...+.+..+.+.
T Consensus 188 ~~~d~~~~s~~K~~------g~~g~g~~~~~~~~--~~~~~~~~~~~~---~~~~~~~~~--------~~~~~~~~~al~ 248 (382)
T 4hvk_A 188 IGADMLTISSNDIY------GPKGVGALWIRKEA--KLQPVILGGGQE---NGLRSGSEN--------VPSIVGFGKAAE 248 (382)
T ss_dssp HTCSEEEEESGGGT------SCTTCEEEEEETTC--CCCCSSCSSCTG---GGTSCSCCC--------HHHHHHHHHHHH
T ss_pred cCCCEEEEeHHHhc------CCCceEEEEEcCcc--CcCcccccCCCc---CccccCCcC--------HHHHHHHHHHHH
Confidence 57999999999975 34578899888654 222222111000 000011111 111222223333
Q ss_pred HhcHHHHHHHHHHHHHHHHHHHHHhhccCCeeecCCCC-ceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCC-C
Q 001989 862 MMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNG-TVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMS-W 939 (985)
Q Consensus 862 ~lg~eGl~~~~~~~~~~a~~l~~~L~~g~~l~~~~~~~-~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~-~ 939 (985)
.+ .+++++..++..++++++.+.|++...+....+.. ...+.+.+.++ +.+..++.+.|.++||.+.... +
T Consensus 249 ~~-~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~l~~~gi~v~~g~~~ 321 (382)
T 4hvk_A 249 IT-AMEWREEAERLRRLRDRIIDNVLKIEESYLNGHPEKRLPNNVNVRFS------YIEGESIVLSLDMAGIQASTGSAC 321 (382)
T ss_dssp HH-HHHHHHHHHHHHHHHHHHHHHHTTSTTEEECSCSSSBCTTEEEEEET------TCCHHHHHHHHHHTTCBCBCC---
T ss_pred HH-HhhHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCccccCCCEEEEEEC------CCCHHHHHHHHHHCCEEEeeCCcc
Confidence 22 35778888888999999999998632332222211 11123444543 4678899999999999875321 0
Q ss_pred --C------------C-----CCEEEEeccCCCCHHHHHHHHccCChhHHHHhhccCCc
Q 001989 940 --P------------V-----PGTLMIEPTESESKSWTGIVMLSSPSEKKLHRLKMGRQ 979 (985)
Q Consensus 940 --p------------~-----~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~~~~~~ 979 (985)
+ . .+.+|++++..+|+||+++ +++.|++++++++...+
T Consensus 322 ~~~~~~~~~~~~~~g~~~~~~~~~iRl~~~~~~t~e~i~~--~~~~l~~~~~~~~~~~~ 378 (382)
T 4hvk_A 322 SSKTLQPSHVLMACGLKHEEAHGTLLLTLGRYNTDEDVDR--LLEVLPGVIERLRSMSP 378 (382)
T ss_dssp -----CCCHHHHHTTCCHHHHHTEEEEECCTTCCHHHHHH--HHHHHHHHHHHHHHTCC
T ss_pred CCCCCcchHHHHHcCCChhhcCCeEEEEcCCCCCHHHHHH--HHHHHHHHHHHHHhhcc
Confidence 0 1 4789999999999999999 88999999988765443
|
| >3e9k_A Kynureninase; kynurenine-L-hydrolase, kynurenine hydrolase, pyridoxal-5'-phosphate, inhibitor complex, 3-hydroxy hippur hydroxyhippuric acid, PLP; HET: PLP 3XH; 1.70A {Homo sapiens} PDB: 2hzp_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.9e-23 Score=245.76 Aligned_cols=306 Identities=11% Similarity=0.070 Sum_probs=224.4
Q ss_pred HHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEE-----EEe
Q 001989 212 SLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKV-----VVS 286 (985)
Q Consensus 212 ~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v-----~~v 286 (985)
...++++++|+++|+++.++.+++|+|.++..++.++.-..++|++||++...|+++..++...++..|+++ ...
T Consensus 112 ~~~~l~~~la~~~g~~~~~v~~t~g~t~al~~~~~~~~~~~~~~~~Vl~~~~~~~s~~~~~~~~~~~~G~~~~~~~v~~~ 191 (465)
T 3e9k_A 112 GDESIVGLMKDIVGANEKEIALMNALTVNLHLLMLSFFKPTPKRYKILLEAKAFPSDHYAIESQLQLHGLNIEESMRMIK 191 (465)
T ss_dssp TTHHHHGGGHHHHTCCGGGEEECSCHHHHHHHHHHHHCCCCSSSCEEEEETTCCHHHHHHHHHHHHHTTCCHHHHEEEEC
T ss_pred hHHHHHHHHHHHcCCCcCCEEEECCHHHHHHHHHHHhccccCCCCEEEEcCCcCCchHHHHHHHHHHcCCcceeeeEEEe
Confidence 344578899999999988999999999888877765521113577899999999999988876666667663 232
Q ss_pred --------Cchhhhc-cC---CCEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCC-CCCcccceEE
Q 001989 287 --------DLKDIDY-KS---GDVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILK-PPGELGADIV 352 (985)
Q Consensus 287 --------~~~~l~~-l~---~~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~-~~~~~GaDi~ 352 (985)
+++++++ ++ +++++|++.+| |++|.+.|+++|.++||++|+++++| ..++.|.+. ...++|+|++
T Consensus 192 ~~~~~~~~d~~~l~~~i~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~la~~~g~~vi~D-~a~~~g~~~~~~~~~~~D~~ 270 (465)
T 3e9k_A 192 PREGEETLRIEDILEVIEKEGDSIAVILFSGVHFYTGQHFNIPAITKAGQAKGCYVGFD-LAHAVGNVELYLHDWGVDFA 270 (465)
T ss_dssp CCTTCSSCCHHHHHHHHHHHGGGEEEEEEESBCTTTCBBCCHHHHHHHHHHTTCEEEEE-CTTTTTTSCCCHHHHTCCEE
T ss_pred cCCCCCccCHHHHHHHHHhcCCCeEEEEEeCcccCcceeecHHHHHHHHHHcCCEEEEE-hhhhcCCcCCchhhcCCCEE
Confidence 2356666 64 68999999997 68999999999999999999999995 345666543 2247899999
Q ss_pred EecC-ccccccCCCCCCc-EEEEEEchhhHhcCCCceeeeeecCCCCcceeee--cccccccccccccCCCccchhHHHH
Q 001989 353 VGSA-QRFGVPMGYGGPH-AAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVA--MQTREQHIRRDKATSNICTAQALLA 428 (985)
Q Consensus 353 v~s~-k~lg~P~~~GGP~-~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~--l~tre~~irre~atsni~t~~~l~a 428 (985)
++++ |.| .|||+ +|++++++++.+.+.+.+.||..... ...|.+. ........|++.||+|+ ....+
T Consensus 271 ~~s~~K~l-----~~gp~~~g~l~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~gt~~~---~~~~a 341 (465)
T 3e9k_A 271 CWCSYKYL-----NAGAGGIAGAFIHEKHAHTIKPALVGWFGHEL-STRFKMDNKLQLIPGVCGFRISNPPI---LLVCS 341 (465)
T ss_dssp EECSSSTT-----CCCTTCCCEEEECGGGTTTSCCSSCCGGGBCH-HHHTTCCSCCCBCSSGGGGCCSCCCH---HHHHH
T ss_pred EECccccc-----ccCCCceEEEEEcHHHHhhcCCcccCccCCCC-CcccccCCCcCcCCChHHhccCCccH---HHHHH
Confidence 9998 666 24554 68999999999888877777631100 0012111 11122334556788887 34555
Q ss_pred HHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcC----------CCeEEcCCC----CcceEEEecCC-HHHHHHHHH
Q 001989 429 NMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKL----------GTVEVQGLP----FFDTVKVKCAD-AHAIASAAY 493 (985)
Q Consensus 429 ~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~----------g~~~~~~~~----~~~~~~~~~~~-~~~v~~~L~ 493 (985)
+.+++ .++...|++++.++..++++|+.+.|+++ .+++++.+. ....+.|..+. +.++.+.|.
T Consensus 342 ~~aal--~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~p~~~~~~g~~~~~~~~~~~~~l~~~L~ 419 (465)
T 3e9k_A 342 LHASL--EIFKQATMKALRKKSVLLTGYLEYLIKHNYGKDKAATKKPVVNIITPSHVEERGCQLTITFSVPNKDVFQELE 419 (465)
T ss_dssp HHHHH--HHHHHHCHHHHHHHHHHHHHHHHHHHHHHCC---------CEEECSCSSGGGBCSCEEEEECCTTCCHHHHHH
T ss_pred HHHHH--HHHHHcCHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCeEEeCCCCHhhcccEEEEEecCCHHHHHHHHH
Confidence 55555 44555689999999999999999999883 238887532 13345565554 678999999
Q ss_pred HcCceeeeecCCeEEEEe-ccCCCHHHHHHHHHHHhC
Q 001989 494 KIEMNLRVVDSNTVTASF-DETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 494 ~~GI~~~~~~~~~lris~-t~~~t~edId~li~aL~~ 529 (985)
++||.+....++.+|+|+ +.++|++||++++++|.+
T Consensus 420 ~~Gi~v~~~~~~~iRis~~~~~~t~edi~~~~~~l~~ 456 (465)
T 3e9k_A 420 KRGVVCDKRNPNGIRVAPVPLYNSFHDVYKFTNLLTS 456 (465)
T ss_dssp TTTEECEEETTTEEEEBCCTTTCCHHHHHHHHHHHHH
T ss_pred HCCEEEecCCCCEEEEeCcccCCCHHHHHHHHHHHHH
Confidence 999988755578999999 799999999999999974
|
| >3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=7.5e-23 Score=233.15 Aligned_cols=317 Identities=12% Similarity=0.074 Sum_probs=216.4
Q ss_pred hHHHHHHHHHHHHHHHhCCCc--cc-eecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCccc--HHHHHHCCcE
Q 001989 629 GYQEMFNNLGEWLCTITGFDS--FS-LQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTN--PATAAMCGMK 703 (985)
Q Consensus 629 G~~~~~~e~~~~la~l~G~~~--~~-~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~--~~~a~~~G~~ 703 (985)
...+...++++++++++|.+. .. ++.++|++|+. ++.++ .+++|+||+++..|... ...++..|++
T Consensus 32 ~~~~~~~~~~~~la~~~~~~~~~~~v~~~~g~t~al~-~~~~~--------~~~gd~vi~~~~~~~~~~~~~~~~~~g~~ 102 (384)
T 3zrp_A 32 EFVEALAYSLKGLRYVMGASKNYQPLIIPGGGTSAME-SVTSL--------LKPNDKILVVSNGVFGDRWEQIFKRYPVN 102 (384)
T ss_dssp HHHHHHHHHHHHHHHHHTCCTTSEEEEEESCHHHHHH-HGGGG--------CCTTCEEEEECSSHHHHHHHHHHTTSSCE
T ss_pred HHHHHHHHHHHHHHHHhCCCCCCcEEEEcCCcHHHHH-HHHhh--------cCCCCEEEEecCCcchHHHHHHHHHcCCc
Confidence 345677899999999999986 43 55677777765 44322 14788999987655332 2334678999
Q ss_pred EEEEcCCCCCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCcc
Q 001989 704 IVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYI 782 (985)
Q Consensus 704 vv~v~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~ 782 (985)
++.+|+++++.+|+++|++++++ .++++|++++| |++|.+. |+++|.++|+++|+++|+|++|..+...+ ....+
T Consensus 103 ~~~v~~~~~~~~d~~~l~~~i~~--~~~~~v~~~~~~nptG~~~-~l~~i~~l~~~~~~~li~D~a~~~~~~~~-~~~~~ 178 (384)
T 3zrp_A 103 VKVLRPSPGDYVKPGEVEEEVRK--SEYKLVALTHVETSTGVRE-PVKDVINKIRKYVELIVVDGVSSVGAEEV-KAEEW 178 (384)
T ss_dssp EEEECCSTTCCCCHHHHHHHHHH--SCEEEEEEESEETTTTEEC-CHHHHHHHHGGGEEEEEEECTTTTTTSCC-CTTTT
T ss_pred EEEecCCCCCCCCHHHHHHHHHh--CCCcEEEEeCCCCCCceEC-cHHHHHHHHHhcCCEEEEECcccccCccc-ccccc
Confidence 99999988899999999999983 27999999998 5799998 89999999999999999999985332221 23456
Q ss_pred CCcEEEeCCcccccccCCCCCCceEEEEEcccccCcC-CC-CccccCCCC--CC---CCCC--CCCCCCCCcchhhhHHH
Q 001989 783 GADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFL-PS-HPVVSTGGI--PA---PEKS--QPLGTIAAAPWGSALIL 853 (985)
Q Consensus 783 g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~l-p~-~~~g~~~~~--~~---~~~~--~~~~~i~s~~~g~~~~~ 853 (985)
++|++++|+||+|+ |++|+|++++++++.+.+ .. ...+...+. .. ...+ ..+ ...+. +....
T Consensus 179 ~~d~~~~s~~K~~~-----~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~---~~~~~ 249 (384)
T 3zrp_A 179 NVDVYLTASQKALG-----SAAGLGLLLLSPKALSILDSQNSIAGYYLDLRNWLPVMRGAEEGKAA-YFATP---PVHVI 249 (384)
T ss_dssp TCSEEEEETTSTTC-----CCSSEEEEEECHHHHHHHHHCCCSCCSTTCHHHHHHHHHHHHTTCCC-CSSCC---CHHHH
T ss_pred CCCEEEecCccccc-----CCCceEEEEECHHHHHHhcCCCCCCcccccHHHHHHHHHhhcccCCC-cCCCC---CHHHH
Confidence 89999999999984 346899999998765443 11 000000000 00 0000 000 00000 11122
Q ss_pred HHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCC
Q 001989 854 PISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGF 932 (985)
Q Consensus 854 ~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi 932 (985)
.+..+.+..+..+++.+..++..++++++.+.|++ ++++..+.......+.+.+.++ +.+..++.+.|.++||
T Consensus 250 ~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~l~~~gi 323 (384)
T 3zrp_A 250 LQLAEAFRLIEKEGIENRIKRHTMVASAIRAGLEALGLEIVARRPESYSNTVTGVILK------VADPQKVLAGTVNEGV 323 (384)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCBSCSSGGGBCSSEEEEECS------SSCHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHCCCeEccCcccccCccEEEEECC------CCCHHHHHHHHHHCCE
Confidence 22335556666667888888889999999999987 4444321100011222345554 3578899999999999
Q ss_pred ccCCCC-CCCCCEEEEeccCCCCHHHHHHHHccCChhHHHHhhcc
Q 001989 933 HGPTMS-WPVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRLKM 976 (985)
Q Consensus 933 ~~~~~~-~p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~~~ 976 (985)
.+.... .+. +.+||++...+|++||++ +++.|++++++++.
T Consensus 324 ~v~~g~~~~~-~~iRi~~~~~~~~e~i~~--~~~~l~~~l~~~~~ 365 (384)
T 3zrp_A 324 EFAPGVHPAF-KYFRIGHMGWVTPNDAII--AISVIERTLRKLGE 365 (384)
T ss_dssp CCEECCCTTC-CEEEEECCSSCCHHHHHH--HHHHHHHHHHHHTC
T ss_pred EEecCCCCCc-CEEEEeccccCCHHHHHH--HHHHHHHHHHHcCC
Confidence 875322 333 789999999999999999 88999999988765
|
| >2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.8e-22 Score=230.39 Aligned_cols=315 Identities=16% Similarity=0.138 Sum_probs=218.7
Q ss_pred HHHHHHHHHHHHHHHhCCC-cc-ceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcc--cHHHHHHCCcEEE
Q 001989 630 YQEMFNNLGEWLCTITGFD-SF-SLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGT--NPATAAMCGMKIV 705 (985)
Q Consensus 630 ~~~~~~e~~~~la~l~G~~-~~-~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~--~~~~a~~~G~~vv 705 (985)
..+..+++++++++++|.+ .. .++.++|++|+..++.++. .++++|++++..|.. +...++..|++++
T Consensus 51 ~~~~~~~~~~~la~~~g~~~~~~v~~~~g~t~a~~~~~~~l~--------~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~ 122 (386)
T 2dr1_A 51 YRKVHMDTVERLREFLEVEKGEVLLVPSSGTGIMEASIRNGV--------SKGGKVLVTIIGAFGKRYKEVVESNGRKAV 122 (386)
T ss_dssp HHHHHHHHHHHHHHHHTCSSSEEEEESSCHHHHHHHHHHHHS--------CTTCEEEEEESSHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHHHHHHHhCCCCCcEEEEeCChHHHHHHHHHHhh--------cCCCeEEEEcCCchhHHHHHHHHHhCCceE
Confidence 3567889999999999997 33 4566778877755554431 367899998877755 4555678899999
Q ss_pred EEcCCCCCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCccCC
Q 001989 706 SVGTDAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIGA 784 (985)
Q Consensus 706 ~v~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~g~ 784 (985)
.+|+++++.+|+++|++++++. +++++|++++| |++|.+. |+++|.++|+++|+++|+|+++..+...+ ....+++
T Consensus 123 ~v~~~~~~~~d~~~l~~~l~~~-~~~~~v~~~~~~nptG~~~-~l~~i~~l~~~~~~~li~D~a~~~~~~~~-~~~~~~~ 199 (386)
T 2dr1_A 123 VLEYEPGKAVKPEDLDDALRKN-PDVEAVTITYNETSTGVLN-PLPELAKVAKEHDKLVFVDAVSAMGGADI-KFDKWGL 199 (386)
T ss_dssp EEECCTTCCCCHHHHHHHHHHC-TTCCEEEEESEETTTTEEC-CHHHHHHHHHHTTCEEEEECTTTBTTBCC-CTTTTTC
T ss_pred EEecCCCCCCCHHHHHHHHhcC-CCCcEEEEEeecCCcchhC-CHHHHHHHHHHcCCeEEEEccccccCccc-cccccCC
Confidence 9999888899999999999532 57899999987 5799998 89999999999999999999986433222 3455689
Q ss_pred cEEEeCCcccccccCCCCCCceEEEEEcccccCcCCC-CccccCCCCC---C-CC-CCCCCCCCCCcchhhhHHHHHHHH
Q 001989 785 DVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPS-HPVVSTGGIP---A-PE-KSQPLGTIAAAPWGSALILPISYT 858 (985)
Q Consensus 785 Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~-~~~g~~~~~~---~-~~-~~~~~~~i~s~~~g~~~~~~~a~a 858 (985)
|++++|+||+|+.| +|+|++++++++.+.+.. ...++..+.. . .. +...+++. +.....++.+
T Consensus 200 di~~~s~sK~~~~~-----~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~a~~~ 268 (386)
T 2dr1_A 200 DVVFSSSQKAFGVP-----PGLAIGAFSERFLEIAEKMPERGWYFDIPLYVKYLKEKESTPSTP------PMPQVFGINV 268 (386)
T ss_dssp SEEEEETTSTTCCC-----SSCEEEEECHHHHHHHTTCTTCCSTTCHHHHHHHHHHHSSCSSCC------CHHHHHHHHH
T ss_pred cEEEEeccccccCC-----CceEEEEECHHHHHHHhcCCCCceEEeHHHHHHhhccCCCCCCCC------CHHHHHHHHH
Confidence 99999999998532 258999999876544321 0001000000 0 00 00011111 1222333445
Q ss_pred HHHHhcHH-HHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCC-ceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccC
Q 001989 859 YIAMMGSK-GLTEASKIAILNANYMAKRLEK-HYPILFRGVNG-TVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGP 935 (985)
Q Consensus 859 ~l~~lg~e-Gl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~-~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~ 935 (985)
.+..+..+ |+.+..++..++++++.+.|++ ++++.. +.+ ...+.+.+.++ .+.+..++.++|.++||.+.
T Consensus 269 ~l~~~~~~g~~~~~~~~~~~~~~~l~~~L~~~g~~~~~--~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~~~gi~v~ 341 (386)
T 2dr1_A 269 ALRIIEKMGGKEKWLEMYEKRAKMVREGVREIGLDILA--EPGHESPTITAVLTP-----PGIKGDEVYEAMRKRGFELA 341 (386)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHTTCCBSS--CTTCBCSSEEEEECC-----TTCCHHHHHHHHHHTTEECE
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHcCCeeCc--CccccCCceEEEEcC-----CCCCHHHHHHHHHHCCeEEe
Confidence 56665555 6777888889999999999987 444422 211 11222445554 24578899999999999875
Q ss_pred CCCCC-CCCEEEEeccCCCCHHHHHHHHccCChhHHHHhhc
Q 001989 936 TMSWP-VPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRLK 975 (985)
Q Consensus 936 ~~~~p-~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~~ 975 (985)
....+ ..+.+||+++.++|++|+++ +++.|++++++++
T Consensus 342 ~~~~~~~~~~iRi~~~~~~~~~~i~~--~~~~l~~~~~~~~ 380 (386)
T 2dr1_A 342 KGYGSVKEKTFRIGHMGYMKFEDIQE--MLDNLREVINELK 380 (386)
T ss_dssp ECCGGGTTTEEEEECCSSCCHHHHHH--HHHHHHHHHHHHH
T ss_pred cCccccCCCEEEEECCCCCCHHHHHH--HHHHHHHHHHHcC
Confidence 43222 24799999999999999999 8899999887754
|
| >1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.4e-21 Score=223.20 Aligned_cols=314 Identities=17% Similarity=0.150 Sum_probs=225.3
Q ss_pred CCChhhHhhhHHHHHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcC
Q 001989 199 TPYQAEIAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADG 278 (985)
Q Consensus 199 ~pyq~e~sqg~l~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~ 278 (985)
+|+.........+.+.++++.+|+++|.++.++.+++|+|.++++++.++++ ++||+|+++...|+++...+..+++.
T Consensus 47 ~~~~~~~y~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a~~~~~~~~~~--~~gd~vl~~~~~~~~~~~~~~~~~~~ 124 (390)
T 1elu_A 47 GPFSIAANQHIQQLIAQLRQALAETFNVDPNTITITDNVTTGCDIVLWGLDW--HQGDEILLTDCEHPGIIAIVQAIAAR 124 (390)
T ss_dssp CSSSHHHHHHHHHHHHHHHHHHHHHTTSCGGGEEEESSHHHHHHHHHHHSCC--CTTCEEEEETTCCHHHHHHHHHHHHH
T ss_pred CCcchhhHHHHHHHHHHHHHHHHHHcCCCHHHEEEeCChHHHHHHHHhCCCC--CCCCEEEEecCcccHHHHHHHHHHHH
Confidence 4443333333346678899999999999888899999999888887776533 37899999999999998877655555
Q ss_pred CCeEEEEeCch----------hhhc-cCCCEeEEEEEcC-CCCeeeccHHHHHHHHH----hCCcEEEEEecCccccCCC
Q 001989 279 FDIKVVVSDLK----------DIDY-KSGDVCGVLVQYP-GTEGEVLDYGDFIKNAH----ANGVKVVMATDLLALTILK 342 (985)
Q Consensus 279 ~gi~v~~v~~~----------~l~~-l~~~t~~V~v~~p-n~~G~v~di~~I~~~a~----~~galliV~a~~~~lg~l~ 342 (985)
.|.+++.++.+ +|++ +++++++|++.+| |.+|.+.|+++|.++|+ ++|+++++| +..+.|...
T Consensus 125 ~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~~~~li~D-ea~~~g~~~ 203 (390)
T 1elu_A 125 FGITYRFFPVAATLNQGDAAAVLANHLGPKTRLVILSHLLWNTGQVLPLAEIMAVCRRHQGNYPVRVLVD-GAQSAGSLP 203 (390)
T ss_dssp HCCEEEEECCGGGSSSSCHHHHHHTTCCTTEEEEEEESBCTTTCCBCCHHHHHHHHHHCCSSSCCEEEEE-CTTTBTTBC
T ss_pred hCcEEEEEcCCCCCCccchHHHHHHhcCCCceEEEEeccccCCceecCHHHHHHHHhhhhhhcCcEEEEE-cccccCCcC
Confidence 68888887652 4555 7788999999988 77999999999999999 999999995 344555432
Q ss_pred -CCCcccceEEEecC-ccccccCCCCCCcEEEEEEchhhHhcCCCceeeee-e-cCCCCcceeeecccccccccccccCC
Q 001989 343 -PPGELGADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVS-I-DSSGKPALRVAMQTREQHIRRDKATS 418 (985)
Q Consensus 343 -~~~~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t-~-d~~g~~~~~l~l~tre~~irre~ats 418 (985)
...++++|++++|. |++ +||+++|++++++++++.+.....|+. . +..+...|.+ .+...+...+|.
T Consensus 204 ~~~~~~~~d~~~~s~~K~~-----~~~~g~G~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~----~~~~~~~~~~~~ 274 (390)
T 1elu_A 204 LDFSRLEVDYYAFTGHKWF-----AGPAGVGGLYIHGDCLGEINPTYVGWRSITYGAKGEPTGW----AEGGKRFEVATS 274 (390)
T ss_dssp CCTTTSCCSEEEEESSSTT-----CCCTTCEEEEECTTTGGGCCCCSCCTTTEEECTTSCEEEE----CSGGGGGCCSCC
T ss_pred CChhhcCCCEEEccccccc-----cCCCceEEEEECHHhHhhcCCccccCCcccccccCccccc----ccchHhhCCCCC
Confidence 22467899999998 545 455678999999998888765544431 0 0001111221 111112234554
Q ss_pred CccchhHHHHHHHHHHHHHhCcch-HHHHHHHHHHHHHHHHHHHhcCCCeEEcCC--CCcceEEEecC-C--HHHHHHHH
Q 001989 419 NICTAQALLANMAAMYAVYHGPEG-LKTIAQRVHGLAGTFALGLKKLGTVEVQGL--PFFDTVKVKCA-D--AHAIASAA 492 (985)
Q Consensus 419 ni~t~~~l~a~~aa~~l~~~g~~G-l~~i~~~~~~~a~~l~~~L~~~g~~~~~~~--~~~~~~~~~~~-~--~~~v~~~L 492 (985)
|. ....++.+++ ..+..+| ++++.++..++.+++.+.|+++.|++++.+ ...+-+.+.++ + ..++.++|
T Consensus 275 ~~---~~~~a~~~al--~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 349 (390)
T 1elu_A 275 AY---PQYAGLLAAL--QLHQRQGTAEERYQAICQRSEFLWRGLNQLPHVHCLATSAPQAGLVSFTVDSPLGHRAIVQKL 349 (390)
T ss_dssp CH---HHHHHHHHHH--HHHHHHCCHHHHHHHHHHHHHHHHHHHHHSTTEEESCSSCCSSSEEEEEECSSSCHHHHHHHH
T ss_pred CH---HHHHHHHHHH--HHHHHcCCHHHHHHHHHHHHHHHHHHHHhcCCcEEecCccccccEEEEEcCCCCCHHHHHHHH
Confidence 43 2333333443 3333445 889999999999999999999833988742 22334555654 2 78899999
Q ss_pred HHcCceeeeec-CCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 493 YKIEMNLRVVD-SNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 493 ~~~GI~~~~~~-~~~lris~t~~~t~edId~li~aL~~ 529 (985)
.++||.+.... ++.+|++++..+|++|+++++++|++
T Consensus 350 ~~~gi~v~~~~~~~~iRis~~~~~~~~~i~~~~~~l~~ 387 (390)
T 1elu_A 350 EEQRIYLRTIADPDCIRACCHYITDEEEINHLLARLAD 387 (390)
T ss_dssp HHTTEECEEETTTTEEEEECCTTCCHHHHHHHHHHHTT
T ss_pred HHCCEEEEecCCCCeEEEecccCCCHHHHHHHHHHHHh
Confidence 99999987653 57899999999999999999999975
|
| >3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae} | Back alignment and structure |
|---|
Probab=99.91 E-value=7.9e-23 Score=235.53 Aligned_cols=318 Identities=14% Similarity=0.109 Sum_probs=217.2
Q ss_pred HHHHHHHHHHHHHHHhCCCccc--eecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcc--cHHHHHHCCcEEE
Q 001989 630 YQEMFNNLGEWLCTITGFDSFS--LQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGT--NPATAAMCGMKIV 705 (985)
Q Consensus 630 ~~~~~~e~~~~la~l~G~~~~~--~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~--~~~~a~~~G~~vv 705 (985)
..+...++++++++++|.+... ++.++|++|+..++.++. .++++||+++..|.. +...++..|++++
T Consensus 44 ~~~~~~~~~~~la~~~~~~~~~~v~~~~sgt~al~~~~~~~~--------~~gd~Vl~~~~~~~~~~~~~~~~~~g~~~~ 115 (411)
T 3nnk_A 44 MTHYMNEVMALYRGVFRTENRWTMLVDGTSRAGIEAILVSAI--------RPGDKVLVPVFGRFGHLLCEIARRCRAEVH 115 (411)
T ss_dssp HHHHHHHHHHHHHHHHTCCCSEEEEEESCHHHHHHHHHHHHC--------CTTCEEEEEECSHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHHHHHHHhCCCCCcEEEECCCcHHHHHHHHHHhc--------CCCCEEEEecCCchHHHHHHHHHHcCCeEE
Confidence 3466788999999999988643 455677877765554431 478899998876644 4445678899999
Q ss_pred EEcCCCCCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCccCC
Q 001989 706 SVGTDAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIGA 784 (985)
Q Consensus 706 ~v~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~g~ 784 (985)
.+|+++++.+|+++|++++++ +++++|++++| |++|.+. |+++|+++|+++|+++|+|++|..+...+ ....+++
T Consensus 116 ~v~~~~~~~~d~~~l~~~i~~--~~~~~v~~~~~~nptG~~~-~l~~i~~l~~~~~~~li~Dea~~~~~~~~-~~~~~~~ 191 (411)
T 3nnk_A 116 TIEVPWGEVFTPDQVEDAVKR--IRPRLLLTVQGDTSTTMLQ-PLAELGEICRRYDALFYTDATASLGGNPL-ETDVWGL 191 (411)
T ss_dssp EEECCTTCCCCHHHHHHHHHH--HCCSEEEEESEETTTTEEC-CCTTHHHHHHHHTCEEEEECTTTBTTBCC-CTTTTTC
T ss_pred EEecCCCCCCCHHHHHHHHhh--CCCeEEEEeCCCCCcceec-cHHHHHHHHHHcCCEEEEECCcccCCccc-chhccCC
Confidence 999988899999999999983 27889999997 5799998 89999999999999999999986432222 3456689
Q ss_pred cEEEeCCcccccccCCCCCCceEEEEEcccccCcCCC------CccccC-----CCCCC-C--C--------CCCCCCCC
Q 001989 785 DVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPS------HPVVST-----GGIPA-P--E--------KSQPLGTI 842 (985)
Q Consensus 785 Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~------~~~g~~-----~~~~~-~--~--------~~~~~~~i 842 (985)
|++++++||+|+ |++|+|++++++++.+.+.. .+.|.. ....+ . . ..... ..
T Consensus 192 d~~~~s~~K~l~-----~~~g~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~-~~ 265 (411)
T 3nnk_A 192 DAVSAGMQKCLG-----GPSGTSPITLSARMEEAIRRRKCVEEGIRTDAHRDGDEEMIYSNYFDLGMVMDYWGPERL-NH 265 (411)
T ss_dssp SEEECCSTTTTC-----CCSSEEEEEECHHHHHHHHTTCCCCGGGCCTTCCCCSSCCCSCSTTCHHHHHHHHSTTCC-CC
T ss_pred cEEEecCccccC-----CCCceEEEEECHHHHHHHhhcccccccccccccccccCCCCcccccchHHHHhhhccccC-CC
Confidence 999999999974 44578999998765432211 011110 00000 0 0 00000 00
Q ss_pred CCcchhhhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHH
Q 001989 843 AAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPE 921 (985)
Q Consensus 843 ~s~~~g~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~ 921 (985)
.+. +...+.+..+.+..+..+|+++..++..++++++.+.|++ ++.+..+ +.....+.+.+.++ .+.+..
T Consensus 266 ~~~---~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~-~~~~~~~~~~~~~~-----~~~~~~ 336 (411)
T 3nnk_A 266 HTE---ATTALFGARECARLILQEGLDYGIARHKLHGDALVKGIQAMGLETFGD-LKHKMNNVLGVVIP-----QGINGD 336 (411)
T ss_dssp SCC---CHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCBCSC-GGGBCSSEEEEECC-----TTCCHH
T ss_pred CCC---CHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCEeCCC-cccccccEEEEECC-----CCCCHH
Confidence 000 1222333345566666677888888899999999999987 4554321 10111223445553 256788
Q ss_pred HHHHHHHHC-CCccCCCCCC-CCCEEEEec-cCCCCHHHHHHHHccCChhHHHHhhcc
Q 001989 922 DVAKRLMDY-GFHGPTMSWP-VPGTLMIEP-TESESKSWTGIVMLSSPSEKKLHRLKM 976 (985)
Q Consensus 922 ~v~~~L~~~-Gi~~~~~~~p-~~~~lris~-t~~~t~eeId~~~~~~~l~~~~~~~~~ 976 (985)
++.++|.++ ||.+.....+ ..+.+||++ ...+|++||++ +++.|+++++++..
T Consensus 337 ~l~~~l~~~~gi~v~~g~~~~~~~~iRi~~~~~~~~~~~i~~--~~~~l~~~l~~~~~ 392 (411)
T 3nnk_A 337 QARKLMLEDFGIEIGTSFGPLHGKVWRIGTMGYNARKDCVMT--TLSALEAVLNYLKF 392 (411)
T ss_dssp HHHHHHHHHHSEEEEECCGGGTTTEEEEECCGGGCSHHHHHH--HHHHHHHHHHHTTC
T ss_pred HHHHHHHHhcCeEEeCccCCCCCCEEEEeCccCcCCHHHHHH--HHHHHHHHHHHcCC
Confidence 999999886 9987532111 247999998 77789999999 88999999887643
|
| >3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.90 E-value=3.1e-21 Score=220.36 Aligned_cols=347 Identities=14% Similarity=0.152 Sum_probs=242.5
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhcCCCccc--eecCCCCCCCCCcHHHHHHHHhCCccccccCCChhhHhhhHHHHHHHHH
Q 001989 140 KFSKFDEGLTESQMIEHMQKLASMNKVYK--SFIGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQ 217 (985)
Q Consensus 140 ~lp~~~~~~se~e~~~~~~~l~~~n~~~~--~~lG~g~y~~~~p~~v~~~i~~~~~~~t~~~pyq~e~sqg~l~~i~e~q 217 (985)
+|| ..++++.+++++++++...+..+. .|+|.+..+ .++.+.+++.+. +.. ....+...++..+...+++
T Consensus 4 ~lp--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~a~~~~---~~~-~~~~~~~~~~~~~~~~~l~ 75 (397)
T 3f9t_A 4 NMQ--EKGVSEKEILEELKKYRSLDLKYEDGNIFGSMCSN--VLPITRKIVDIF---LET-NLGDPGLFKGTKLLEEKAV 75 (397)
T ss_dssp SCC--SSCCCHHHHHHHHHHHHTTSCCGGGTCBCSCSCCC--CCTHHHHHHHHH---TTC-CTTSGGGBHHHHHHHHHHH
T ss_pred cCC--CCCCCHHHHHHHHHHhhccCCCCCCCCeEEEecCC--CcHHHHHHHHHH---Hhh-cCCCcccChhHHHHHHHHH
Confidence 355 467899999999999987665543 677777433 333443344431 111 0112223347778888999
Q ss_pred HHHHHhcCCCCcceeeccchHHHHHHHHHHhhhh----------cCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeC
Q 001989 218 TMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQ----------KGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSD 287 (985)
Q Consensus 218 ~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~----------~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~ 287 (985)
+++++++|.+.+++.+++|||.+++.++.++... .++||+|+++...|+++...++. .|++++.++
T Consensus 76 ~~la~~~~~~~~~i~~~~ggt~a~~~~~~~~~~~~~~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~----~g~~~~~v~ 151 (397)
T 3f9t_A 76 ALLGSLLNNKDAYGHIVSGGTEANLMALRCIKNIWREKRRKGLSKNEHPKIIVPITAHFSFEKGREM----MDLEYIYAP 151 (397)
T ss_dssp HHHHHHTTCTTCEEEEESCHHHHHHHHHHHHHHHHHHHHHTTCCCCSSCEEEEETTCCTHHHHHHHH----HTCEEEEEC
T ss_pred HHHHHHhCCCCCCEEEecCcHHHHHHHHHHHHHHHHhhhhhcccCCCCeEEEECCcchhHHHHHHHH----cCceeEEEe
Confidence 9999999999988899999998888777654321 12489999999999999888764 378888876
Q ss_pred c--------hhhhc-cCC-CEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCC---C---------CC
Q 001989 288 L--------KDIDY-KSG-DVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTIL---K---------PP 344 (985)
Q Consensus 288 ~--------~~l~~-l~~-~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l---~---------~~ 344 (985)
. ++|++ +++ ++++|++.+| |++|.+.|+++|.++|+++|+++++|. .++.+.+ . .+
T Consensus 152 ~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~De-a~~~~~~~~~~~~~~~~~~~~~ 230 (397)
T 3f9t_A 152 IKEDYTIDEKFVKDAVEDYDVDGIIGIAGTTELGTIDNIEELSKIAKENNIYIHVDA-AFGGLVIPFLDDKYKKKGVNYK 230 (397)
T ss_dssp BCTTSSBCHHHHHHHHHHSCCCEEEEEBSCTTTCCBCCHHHHHHHHHHHTCEEEEEC-TTGGGTGGGCCGGGCCTTCCCC
T ss_pred eCCCCcCCHHHHHHHHhhcCCeEEEEECCCCCCCCCCCHHHHHHHHHHhCCeEEEEc-cccchhhhhccccccccccccc
Confidence 5 34555 666 8999999887 789999999999999999999999953 3432211 1 02
Q ss_pred Ccc--cceEEEecC-ccccccCCCCCCcEEEEEEchh-hHhcCC---CceeeeeecCCCCcceeeecccccccccccccC
Q 001989 345 GEL--GADIVVGSA-QRFGVPMGYGGPHAAFLATSQE-YKRMMP---GRIVGVSIDSSGKPALRVAMQTREQHIRRDKAT 417 (985)
Q Consensus 345 ~~~--GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~-~~~~lp---~~~vG~t~d~~g~~~~~l~l~tre~~irre~at 417 (985)
-.+ |+|+++.+. |.+++| .++|+++++++ +.+.+. +.+.+ +. + ....+|
T Consensus 231 ~~~~~~~~~~~~s~~K~~~~~-----~~~g~~~~~~~~~~~~~~~~~~~~~~------~~-----------~--~~~~~~ 286 (397)
T 3f9t_A 231 FDFSLGVDSITIDPHKMGHCP-----IPSGGILFKDIGYKRYLDVDAPYLTE------TR-----------Q--ATILGT 286 (397)
T ss_dssp CSGGGTCSEEECCTTTTTCCC-----SSCEEEEESSGGGGGGTCEECTTSSS------SE-----------E--CSSCSS
T ss_pred ccccccCCeEEEccccccCCC-----CCceEEEEeCHHHHHhhccCCccccC------CC-----------c--cccccc
Confidence 112 899999998 654332 34677777654 444441 11100 00 0 011233
Q ss_pred CCccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCCCcceEEEecCCHHHHHHHHHHcCc
Q 001989 418 SNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDTVKVKCADAHAIASAAYKIEM 497 (985)
Q Consensus 418 sni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~~~L~~~GI 497 (985)
.+.. ...+..+++ ..++.++++++.++..++++++.+.|+++| ++++.++..+.+.+..++..++.+.|.++||
T Consensus 287 ~~~~---~~~~~~a~~--~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi 360 (397)
T 3f9t_A 287 RVGF---GGACTYAVL--RYLGREGQRKIVNECMENTLYLYKKLKENN-FKPVIEPILNIVAIEDEDYKEVCKKLRDRGI 360 (397)
T ss_dssp CCSH---HHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CCBSSCCSSSEEEEECTTHHHHHHHHHHTTC
T ss_pred cccc---hHHHHHHHH--HHHhHHHHHHHHHHHHHHHHHHHHHHHHCC-CEEEcCCCccEEEEEeCCHHHHHHHHHhCCe
Confidence 3321 233333333 455677889999999999999999999996 8876555555666776667889999999999
Q ss_pred eeeeec-CCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 498 NLRVVD-SNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 498 ~~~~~~-~~~lris~t~~~t~edId~li~aL~~ 529 (985)
.+.... ++.+|++++..+|++|+++++++|.+
T Consensus 361 ~v~~~~~~~~~Ri~~~~~~~~e~i~~~~~~l~~ 393 (397)
T 3f9t_A 361 YVSVCNCVKALRIVVMPHIKREHIDNFIEILNS 393 (397)
T ss_dssp BCEECSSSSEEEEECCTTCCHHHHHHHHHHHHH
T ss_pred EEeccCCCCEEEEEEcCCCCHHHHHHHHHHHHH
Confidence 887653 58999999999999999999999874
|
| >3vp6_A Glutamate decarboxylase 1; catalytic loop SWAP, lyase; HET: LLP HLD; 2.10A {Homo sapiens} PDB: 2okj_A* 2okk_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=4.2e-22 Score=236.98 Aligned_cols=363 Identities=12% Similarity=0.045 Sum_probs=236.6
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhcCCCcc--ceecCCCCCCCCCcHHHHHHHHhCCccccccCCChhhHhhhHHHHHHH
Q 001989 138 SMKFSKFDEGLTESQMIEHMQKLASMNKVY--KSFIGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLN 215 (985)
Q Consensus 138 ~~~lp~~~~~~se~e~~~~~~~l~~~n~~~--~~~lG~g~y~~~~p~~v~~~i~~~~~~~t~~~pyq~e~sqg~l~~i~e 215 (985)
++++| ..+.++.+++++++++...+..+ ..|+|.-.-+...|+.+.+.+.+. +-.....| ..+.+..+...+
T Consensus 66 ~~~~p--~~~~~~~~~~~~~~~~~~~~~~~~~p~f~~~~~~~~~~~~~~~e~l~~~--~~~~~~~~--~~~p~~~~le~~ 139 (511)
T 3vp6_A 66 NLELS--DHPESLEQILVDCRDTLKYGVRTGHPRFFNQLSTGLDIIGLAGEWLTST--ANTNMFTY--EIAPVFVLMEQI 139 (511)
T ss_dssp CCCCC--SSCCCHHHHHHHHHHHHHTSCCTTSTTEESSSSCCCCHHHHHHHHHHHH--HCCCSSCT--TTCHHHHHHHHH
T ss_pred CCCCC--CCCCCHHHHHHHHHHHhhccCCCCCCCceEeecCCCcHHHHHHHHHHHH--hccCCCCc--ccCchHHHHHHH
Confidence 45677 46889999999999998776432 346664432222344443332211 00001122 245566677777
Q ss_pred HHHHHHHhcCCC--CcceeeccchHHHHHHHHHHhhhh-------cC----CCCEEEEcCCCChhHHHHHHHhhcCCCe-
Q 001989 216 FQTMIADLTGLP--MSNASLLDEGTAAAEAMAMCNNIQ-------KG----KKKTFIIASNCHPQTIDICITRADGFDI- 281 (985)
Q Consensus 216 ~q~~ia~L~g~~--~~~~sl~~~~ta~~ea~~~a~~~~-------~~----~g~~Vlv~~~~H~s~~~~~~~~a~~~gi- 281 (985)
...++++++|++ .+++.+++|||.++..++++.+.. .+ ++++|++++..|+++.+.++.+ +.|.
T Consensus 140 ~~~~l~~~~g~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~G~~~~~~~~v~~s~~~H~s~~~~~~~~--g~g~~ 217 (511)
T 3vp6_A 140 TLKKMREIVGWSSKDGDGIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVPKLVLFTSEQSHYSIKKAGAAL--GFGTD 217 (511)
T ss_dssp HHHHHHHHHTCCSSSCEEEEESSHHHHHHHHHHHHHHHHCTHHHHHCGGGSCCEEEEEETTSCTHHHHHHHHT--TSCGG
T ss_pred HHHHHHHHhCCCCCCCceEECCchHHHHHHHHHHHHHHhhhhhhhcCcccCCCeEEEECCCchHHHHHHHHHc--CCCCC
Confidence 888999999998 457889999998777666543321 11 4678999999999999998753 2332
Q ss_pred EEEEeCc--------hhhhc-cCCC------EeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCCCC-
Q 001989 282 KVVVSDL--------KDIDY-KSGD------VCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKPP- 344 (985)
Q Consensus 282 ~v~~v~~--------~~l~~-l~~~------t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~~~- 344 (985)
+++.++. ++|++ +.++ +++|++++| |++|.++|+++|+++||++|++++||+ .++.+.+..+
T Consensus 218 ~~~~v~~d~~~~~d~~~Le~~i~~~~~~g~~~~~vv~~~~~~~~G~vd~l~~I~~ia~~~~~~lhvD~-a~~~~~~~~~~ 296 (511)
T 3vp6_A 218 NVILIKCNERGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDPIQEIADICEKYNLWLHVDA-AWGGGLLMSRK 296 (511)
T ss_dssp GEEEECBCTTSCBCHHHHHHHHHHHHHTTCEEEEEEEEBSCSSSCCBCCHHHHHHHHHHHTCEEEEEE-TTGGGGGGCTT
T ss_pred cEEEeecCCCCccCHHHHHHHHHHHHhcCCCcEEEEEecCCCCCcccccHHHHHHHHHHcCCEEEEEc-cchhhHhhChh
Confidence 6666643 45665 5443 889999987 689999999999999999999999954 4455544222
Q ss_pred ------CcccceEEEecC-ccccccCCCCCCcEEEEEEchh-hHhc----CCCceeeeeecCCCCcceeeeccccccccc
Q 001989 345 ------GELGADIVVGSA-QRFGVPMGYGGPHAAFLATSQE-YKRM----MPGRIVGVSIDSSGKPALRVAMQTREQHIR 412 (985)
Q Consensus 345 ------~~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~-~~~~----lp~~~vG~t~d~~g~~~~~l~l~tre~~ir 412 (985)
+..+||++++++ |+|++|. ++|+++++++ +++. .++.+.+...+..+. +.. .. ..
T Consensus 297 ~~~~~~g~~~aDsv~~~~hK~l~~p~-----g~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~--~~~----~~--~~ 363 (511)
T 3vp6_A 297 HRHKLNGIERANSVTWNPHKMMGVLL-----QCSAILVKEKGILQGCNQMHASYLFQQDKHYDVS--YDT----GD--KA 363 (511)
T ss_dssp TGGGGTTGGGCSEEEECTTSTTCCCS-----CCEEEEESSTTHHHHHHCCCCTTTCCSSCSSCGG--GCC----GG--GS
T ss_pred hhhhccCCccCCEEEECcccccCCCc-----CeEEEEEeCHHHHHHHhccCCccccCcccccccc--cCc----cC--CC
Confidence 345789999999 6676663 4677888763 4433 233332211000000 000 00 00
Q ss_pred ccccCCCccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcC--CCCcceEEEecCC------
Q 001989 413 RDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQG--LPFFDTVKVKCAD------ 484 (985)
Q Consensus 413 re~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~--~~~~~~~~~~~~~------ 484 (985)
-+.++.. ...++.++ +..+|.+|++++.+++.++++|+++.|+++.+++++. .+.+..++|+...
T Consensus 364 ~~~~r~~-----~al~~~~a--l~~~g~~gl~~~~~~~~~~a~~l~~~L~~~pg~~l~~~~~p~~~~v~f~~~p~~~~~~ 436 (511)
T 3vp6_A 364 IQCGRHV-----DIFKFWLM--WKAKGTVGFENQINKCLELAEYLYAKIKNREEFEMVFNGEPEHTNVCFWYIPQSLRGV 436 (511)
T ss_dssp SCSSCCC-----CHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTEEESSSSCCSSSCEEEEECCGGGSSC
T ss_pred CCCCCch-----HHHHHHHH--HHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEecCCCCeEEEEEEEeCcccccc
Confidence 0001110 11122222 4677899999999999999999999999984499986 5666677775311
Q ss_pred -------------HHHHHHHHHHcCcee-ee--ecC--CeEEEEe-ccCCCHHHHHHHHHHHhC
Q 001989 485 -------------AHAIASAAYKIEMNL-RV--VDS--NTVTASF-DETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 485 -------------~~~v~~~L~~~GI~~-~~--~~~--~~lris~-t~~~t~edId~li~aL~~ 529 (985)
..++.++|.++|+.+ .. ... +.+|+++ +..+|.+|||+++++|.+
T Consensus 437 ~~~~~~~~~l~~~~~~l~~~L~~~G~~~~~~~~~~~~~~~lRi~~~~~~~t~~di~~ll~~i~~ 500 (511)
T 3vp6_A 437 PDSPQRREKLHKVAPKIKALMMESGTTMVGYQPQGDKANFFRMVISNPAATQSDIDFLIEEIER 500 (511)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHTSCEEEEEEETTEEEEEEECCCCTTCCHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHHHHHhcCCEEEEEEEeCCceEEEEEEecCCCCCHHHHHHHHHHHHH
Confidence 236889999998743 32 122 3599999 789999999999999874
|
| >3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.90 E-value=2.6e-22 Score=231.64 Aligned_cols=317 Identities=12% Similarity=0.065 Sum_probs=216.5
Q ss_pred HHHHHHHHHHHHHHHhCCCccc-e-ecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcc--cHHHHHHCCcEEE
Q 001989 630 YQEMFNNLGEWLCTITGFDSFS-L-QPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGT--NPATAAMCGMKIV 705 (985)
Q Consensus 630 ~~~~~~e~~~~la~l~G~~~~~-~-~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~--~~~~a~~~G~~vv 705 (985)
..+...++++++++++|.+... + +.++|++|+..++.++ ..++|+||+++..|.. ....++..|++++
T Consensus 42 ~~~~~~~l~~~la~~~g~~~~~~~~~~~s~t~al~~~~~~l--------~~~gd~Vl~~~~~~~~~~~~~~~~~~g~~~~ 113 (416)
T 3isl_A 42 FTGIMNETMEMLRELFQTKNRWAYPIDGTSRAGIEAVLASV--------IEPEDDVLIPIYGRFGYLLTEIAERYGANVH 113 (416)
T ss_dssp HHHHHHHHHHHHHHHTTCCCSEEEEEESCHHHHHHHHHHHH--------CCTTCEEEEEESSHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHHHHHHHhCCCCCcEEEecCcHHHHHHHHHHHh--------cCCCCEEEEecCCcccHHHHHHHHhcCCeeE
Confidence 3566789999999999988653 3 5677777775554433 1478999998776554 3344678899999
Q ss_pred EEcCCCCCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCccCC
Q 001989 706 SVGTDAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIGA 784 (985)
Q Consensus 706 ~v~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~g~ 784 (985)
.+|+++++.+|+++|++++++ +++++|++++| |++|.+. |+++|.++|+++|+++++|++|..+...+ ....+++
T Consensus 114 ~v~~~~~~~~d~~~l~~~i~~--~~~~~v~~~~~~nptG~~~-~l~~i~~l~~~~~~~li~D~a~~~~~~~~-~~~~~~~ 189 (416)
T 3isl_A 114 MLECEWGTVFDPEDIIREIKK--VKPKIVAMVHGETSTGRIH-PLKAIGEACRTEDALFIVDAVATIGGCEV-KVDEWKI 189 (416)
T ss_dssp EEECCTTCCCCHHHHHHHHHH--HCCSEEEEESEETTTTEEC-CCHHHHHHHHHTTCEEEEECTTTTTTSCC-CTTTTTC
T ss_pred EEecCCCCCCCHHHHHHHHhh--CCCcEEEEEccCCCCceec-CHHHHHHHHHHcCCEEEEECCccccCCCc-chhhcCC
Confidence 999998899999999999973 36789999998 5799998 89999999999999999999985332221 3345689
Q ss_pred cEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCc---ccc------------CCCC---CC---C---CCCCCCC
Q 001989 785 DVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHP---VVS------------TGGI---PA---P---EKSQPLG 840 (985)
Q Consensus 785 Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~---~g~------------~~~~---~~---~---~~~~~~~ 840 (985)
|++++++||+++ |++|+|++++++++.+.+.... .|| +... .. + ......
T Consensus 190 d~~~~s~~K~l~-----g~~g~g~~~~~~~~~~~~~~~~~~~~Gw~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~- 263 (416)
T 3isl_A 190 DAAIGGTQKCLS-----VPSGMAPITYNERVADVIAARKKVERGIATQADRAALSGNRPITSNYFDLSQLEDYWSERRL- 263 (416)
T ss_dssp SEEECCSSSTTC-----CCSSEEEEEECHHHHHHHHTC------------------CCCCSCSTTCHHHHHHHTSTTCC-
T ss_pred CEEEecCccccC-----CCCCeEEEEECHHHHHHhhccccccccccccccchhccCCCCCCccccchHHHHhhhcccCC-
Confidence 999999999974 4458999999987653332100 011 0000 00 0 000000
Q ss_pred CCCCcchhhhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCC-ceeeEEEEEecCccccCCC
Q 001989 841 TIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNG-TVAHEFIVDLRGLKNTAGI 918 (985)
Q Consensus 841 ~i~s~~~g~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~-~~~~~~iv~~~~~~~~~g~ 918 (985)
...+. +.....+..+.+..+..+|+++..++..++++++.+.|++ ++.+.. +.+ ...+.+.+.++ .+.
T Consensus 264 ~~~~~---~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~--~~~~~~~~~~~~~~~-----~~~ 333 (416)
T 3isl_A 264 NHHTE---ATTMLYALREGVRLVLEEGLETRFERHRHHEAALAAGIKAMGLRLFG--DDSCKMPVVTCVEIP-----GGI 333 (416)
T ss_dssp CSSCC---CHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCBCS--CGGGBCTTEEEEECC-----TTC
T ss_pred CCCCC---CHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCEecc--CccccCCcEEEEeCC-----CCC
Confidence 00010 1122233345566666667888888899999999999987 444432 111 11122345543 256
Q ss_pred CHHHHHHHHHHC-CCccCCCCCC-CCCEEEEeccCCCCHHH-HHHHHccCChhHHHHhhcc
Q 001989 919 EPEDVAKRLMDY-GFHGPTMSWP-VPGTLMIEPTESESKSW-TGIVMLSSPSEKKLHRLKM 976 (985)
Q Consensus 919 ~~~~v~~~L~~~-Gi~~~~~~~p-~~~~lris~t~~~t~ee-Id~~~~~~~l~~~~~~~~~ 976 (985)
+..++.+.|.++ ||.+.....+ .++.+||+++..++.+| |++ +++.|+++++++..
T Consensus 334 ~~~~l~~~L~~~~gi~v~~g~~~~~~~~iRi~~~~~~~~~e~i~~--~~~~l~~~~~~~~~ 392 (416)
T 3isl_A 334 DGESVRDMLLAQFGIEIASSFGPLAGKIWRIGTMGYSCRKENVLF--VLAGLEAVLLRHNA 392 (416)
T ss_dssp CHHHHHHHHHHHHCEECBCCCSTTTTTEEEEECCGGGCSHHHHHH--HHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHhCCEEEecCCCCCCCCEEEEecccCCCcHHHHHH--HHHHHHHHHHHcCC
Confidence 788999999887 9987643222 35899999988777777 999 88999999887643
|
| >3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI, transferase; HET: PLP; 2.05A {Escherichia coli} PDB: 3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B* | Back alignment and structure |
|---|
Probab=99.90 E-value=4e-21 Score=222.47 Aligned_cols=315 Identities=12% Similarity=0.103 Sum_probs=216.0
Q ss_pred hhhHHHHHHHHHHHHHHHhCCCccc-eecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHH---HHCCc
Q 001989 627 AQGYQEMFNNLGEWLCTITGFDSFS-LQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATA---AMCGM 702 (985)
Q Consensus 627 ~~G~~~~~~e~~~~la~l~G~~~~~-~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a---~~~G~ 702 (985)
..+..+...++++++++++|.+... ++.++|++|++.++.++..+. . .++++|+++...|+.+...+ ...|+
T Consensus 63 ~~~~~~~~~~l~~~la~~~~~~~~~v~~~~ggt~a~~~a~~~l~~~~---~-~~gd~Vl~~~~~~~~~~~~~~~~~~~g~ 138 (423)
T 3lvm_A 63 GWQAEEAVDIARNQIADLVGADPREIVFTSGATESDNLAIKGAANFY---Q-KKGKHIITSKTEHKAVLDTCRQLEREGF 138 (423)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCGGGEEEESSHHHHHHHHHHHHHHHH---T-TTCCEEEEETTSCHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHHHHcCCCCCeEEEeCChHHHHHHHHHHHHHhh---c-cCCCEEEECCccchHHHHHHHHHHHcCC
Confidence 3456677889999999999998643 556777888876666554322 1 25789999988777665554 45699
Q ss_pred EEEEEcCCCCCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCc
Q 001989 703 KIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGY 781 (985)
Q Consensus 703 ~vv~v~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~ 781 (985)
+++.+|+++++.+|+++|+++++ +++++|++++| |++|.+. |+++|.++|+++|+++++|+++..+... .....
T Consensus 139 ~~~~v~~~~~~~~d~~~l~~~i~---~~~~~v~~~~~~nptG~~~-~l~~i~~l~~~~~~~li~Dea~~~~~~~-~~~~~ 213 (423)
T 3lvm_A 139 EVTYLAPQRNGIIDLKELEAAMR---DDTILVSIMHVNNEIGVVQ-DIAAIGEMCRARGIIYHVDATQSVGKLP-IDLSQ 213 (423)
T ss_dssp EEEEECCCTTSCCCHHHHHHHCC---TTEEEEECCSBCTTTCBBC-CHHHHHHHHHHHTCEEEEECTTTTTTSC-CCTTT
T ss_pred EEEEeccCCCCccCHHHHHHhcC---CCcEEEEEeCCCCCCcccc-CHHHHHHHHHHcCCEEEEEhhhhcCCCC-cChhh
Confidence 99999998899999999999997 78999999988 4799998 8999999999999999999998543221 23445
Q ss_pred cCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHH
Q 001989 782 IGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIA 861 (985)
Q Consensus 782 ~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~ 861 (985)
+++|++++|+||++ |++|+|+++++++....+.....+.... .... .+.. +...+.++.+.+.
T Consensus 214 ~~~di~~~s~sK~~------g~~g~G~~~~~~~~~~~~~~~~~~~~~~---~~~~--~~~~------~~~~~~a~~~al~ 276 (423)
T 3lvm_A 214 LKVDLMSFSGHKIY------GPKGIGALYVRRKPRVRIEAQMHGGGHE---RGMR--SGTL------PVHQIVGMGEAYR 276 (423)
T ss_dssp SCCSEEEEESTTTT------SCSSCEEEEECBTTBCCCCCSSCSSCTT---TTTC--CSCC------CHHHHHHHHHHHH
T ss_pred cCCCEEEechHHhc------CCCCeEEEEEeccccCCCCccccCCccc---cccc--CCCC------CHHHHHHHHHHHH
Confidence 68999999999965 3456899999977665554332221100 0000 1111 1111222223344
Q ss_pred HhcHHHHHHHHHHHHHHHHHHHHHhhccCCeeecCCCC-ceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCC--
Q 001989 862 MMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNG-TVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMS-- 938 (985)
Q Consensus 862 ~lg~eGl~~~~~~~~~~a~~l~~~L~~g~~l~~~~~~~-~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~-- 938 (985)
.+.. .+.+..++..++++++.+.|++...+...++.. ...+.+.+.+. +.+..++.+.|.+ +.+..-.
T Consensus 277 ~~~~-~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~l~~~l~~--i~v~~g~~~ 347 (423)
T 3lvm_A 277 IAKE-EMATEMERLRGLRNRLWNGIKDIEEVYLNGDLEHGAPNILNVSFN------YVEGESLIMALKD--LAVSSGSAC 347 (423)
T ss_dssp HHHH-HHHHHHHHHHHHHHHHHHHHTTSTTEEEESCSTTBCTTEEEEEET------TSCHHHHHHHTTT--EECBCCCC-
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCccccCCCeEEEEeC------CCCHHHHHHHHhh--heeccCccc
Confidence 4333 366777788889999999997632332222211 11122344443 4578889998876 5443210
Q ss_pred -------------CCC-----CCEEEEeccCCCCHHHHHHHHccCChhHHHHhhccCC
Q 001989 939 -------------WPV-----PGTLMIEPTESESKSWTGIVMLSSPSEKKLHRLKMGR 978 (985)
Q Consensus 939 -------------~p~-----~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~~~~~ 978 (985)
+++ .+.+||+++..+|++||++ +++.|++++++++...
T Consensus 348 ~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~t~e~i~~--~~~~l~~~~~~~~~~~ 403 (423)
T 3lvm_A 348 TSASLEPSYVLRALGLNDELAHSSIRFSLGRFTTEEEIDY--TIELVRKSIGRLRDLS 403 (423)
T ss_dssp ----CCCCHHHHHHTCCHHHHHTEEEEECCTTCCHHHHHH--HHHHHHHHHHHHHTSS
T ss_pred cCCCccccHHHHHhCCCccccCceEEEECCCCCCHHHHHH--HHHHHHHHHHHhhccC
Confidence 011 3789999999999999999 8899999998876543
|
| >2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET: LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=1.1e-21 Score=233.16 Aligned_cols=358 Identities=13% Similarity=0.055 Sum_probs=237.8
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhcCCCc--cceecCCCCCCCCCcHHHHHHHHhCCcccccc-CCCh--hhHhhhHHHHH
Q 001989 139 MKFSKFDEGLTESQMIEHMQKLASMNKV--YKSFIGMGYYNTHVPPVILRNIMENPAWYTQY-TPYQ--AEIAQGRLESL 213 (985)
Q Consensus 139 ~~lp~~~~~~se~e~~~~~~~l~~~n~~--~~~~lG~g~y~~~~p~~v~~~i~~~~~~~t~~-~pyq--~e~sqg~l~~i 213 (985)
.++| .++.++.+++++++++...+.. ...|++....+ ..|..+.. ++++++ ++++ .+.+.+..+..
T Consensus 64 ~~~p--~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~-~~~~~~~~------~~l~~~~n~~~~~~~~~~~~~~le 134 (504)
T 2okj_A 64 LELS--DHPESLEQILVDCRDTLKYGVRTGHPRFFNQLSTG-LDIIGLAG------EWLTSTANTNMFTYEIAPVFVLME 134 (504)
T ss_dssp CCCC--SSCCCHHHHHHHHHHHHHTSCCTTCTTEESSSSCC-CCHHHHHH------HHHHHHHCCBSSCTTTCHHHHHHH
T ss_pred CCCC--CCCCCHHHHHHHHHHHhhccCCCCCCCEEEEccCC-CCHHHHHH------HHHHHhhccCCCchhhChHHHHHH
Confidence 3566 4789999999999998776542 23355433211 23433321 233333 3332 34455555666
Q ss_pred HHHHHHHHHhcCCC--CcceeeccchHHHHHHHHHHhhhh-----cCCC-----C-EEEEcCCCChhHHHHHHHhhcCCC
Q 001989 214 LNFQTMIADLTGLP--MSNASLLDEGTAAAEAMAMCNNIQ-----KGKK-----K-TFIIASNCHPQTIDICITRADGFD 280 (985)
Q Consensus 214 ~e~q~~ia~L~g~~--~~~~sl~~~~ta~~ea~~~a~~~~-----~~~g-----~-~Vlv~~~~H~s~~~~~~~~a~~~g 280 (985)
.+..+++++++|++ ..++.+++|||.++..++.+.+.. +++| + +|+++...|+++...++.+ +.|
T Consensus 135 ~~~~~~la~~~g~~~~~~~~~~t~ggtea~~~al~~~~~~~~~~~~~~G~~~~~~~~v~~s~~~h~s~~~~~~~~--g~g 212 (504)
T 2okj_A 135 QITLKKMREIVGWSSKDGDGIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVPKLVLFTSEQSHYSIKKAGAAL--GFG 212 (504)
T ss_dssp HHHHHHHHHHHTCCSSSCEEEEESSHHHHHHHHHHHHHHHHCTTHHHHCGGGSCCEEEEEETTSCTHHHHHHHHT--TSC
T ss_pred HHHHHHHHHHhCCCCCCCCEEEeCCcHHHHHHHHHHHHHHHhhHHhhcCccccCCeEEEECCcchHHHHHHHHHc--CCC
Confidence 66779999999998 678999999998777666544320 0124 5 7999999999999998754 235
Q ss_pred e-EEEEeCc--------hhhhc-cCC------CEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCCC
Q 001989 281 I-KVVVSDL--------KDIDY-KSG------DVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKP 343 (985)
Q Consensus 281 i-~v~~v~~--------~~l~~-l~~------~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~~ 343 (985)
. +++.++. ++|++ +++ ++++|++++| |.+|.++|+++|+++||++|++++||+ .++.+.+..
T Consensus 213 ~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~g~~~~~V~~~~~~~~tG~i~~l~~I~~la~~~g~~lhvD~-a~~~~~~~~ 291 (504)
T 2okj_A 213 TDNVILIKCNERGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDPIQEIADICEKYNLWLHVDA-AWGGGLLMS 291 (504)
T ss_dssp GGGEEEECBCTTSCBCHHHHHHHHHHHHHTTCEEEEEEECBSCSSSCCBCCHHHHHHHHHHHTCEEEEEE-TTGGGGGGC
T ss_pred cccEEEEecCCCCCCCHHHHHHHHHHHHHCCCCceEEEEeCCCCCCCCcCCHHHHHHHHHHcCCEEEEeh-hhhhHHHhC
Confidence 4 6777654 34555 543 5899999998 679999999999999999999999954 233333221
Q ss_pred -------CCcccceEEEecC-ccccccCCCCCCcEEEEEEch-hhHh----cCCCceeeeeecCCCCcceeeeccccc-c
Q 001989 344 -------PGELGADIVVGSA-QRFGVPMGYGGPHAAFLATSQ-EYKR----MMPGRIVGVSIDSSGKPALRVAMQTRE-Q 409 (985)
Q Consensus 344 -------~~~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~-~~~~----~lp~~~vG~t~d~~g~~~~~l~l~tre-~ 409 (985)
.+-.++|+++.++ |++++|. ++|++++++ ++++ ..++.+.+...+ .++.+++.++. +
T Consensus 292 ~~~~~~~~g~~~~D~i~~~~hK~~~~p~-----~~g~l~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~~~~~~~ 362 (504)
T 2okj_A 292 RKHRHKLNGIERANSVTWNPHKMMGVLL-----QCSAILVKEKGILQGCNQMCAGYLFQPDKQ----YDVSYDTGDKAIQ 362 (504)
T ss_dssp TTTGGGGTTGGGCSEEEECTTSTTCCCS-----CCEEEEESSTTHHHHHHCCCCSSSCCSCCS----SCGGGCCGGGSSC
T ss_pred HhhHhhcCCcccCCEEEECchhhcCCCc-----ceEEEEEECHHHHHHHhcCCCccccCCccc----ccCcCCcccCCCC
Confidence 2234899999998 6555553 368999987 4554 345555442111 01112222221 4
Q ss_pred cccccccCCCccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcC--CCCcceEEEec-CC--
Q 001989 410 HIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQG--LPFFDTVKVKC-AD-- 484 (985)
Q Consensus 410 ~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~--~~~~~~~~~~~-~~-- 484 (985)
..||.. ...+++. +..+|.+|++++.+++.++++++.+.|+++.+++++. .+.+..|+|.. +.
T Consensus 363 ~~rr~~-------~l~~~a~-----l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~p~~~~v~f~~~~~~~ 430 (504)
T 2okj_A 363 CGRHVD-------IFKFWLM-----WKAKGTVGFENQINKCLELAEYLYAKIKNREEFEMVFNGEPEHTNVCFWYIPQSL 430 (504)
T ss_dssp SSCBCC-------HHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTEEESSSSCCSSSCEEEEECCGGG
T ss_pred CCCCcc-------HHHHHHH-----HHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEecCCCCeEEEEEEEeCccc
Confidence 445531 1223322 3556788999999999999999999999984499985 45566666653 21
Q ss_pred ----------------HHHHHHHHHHcCc-eeee--ecC--CeEEEEec-cCCCHHHHHHHHHHHhC
Q 001989 485 ----------------AHAIASAAYKIEM-NLRV--VDS--NTVTASFD-ETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 485 ----------------~~~v~~~L~~~GI-~~~~--~~~--~~lris~t-~~~t~edId~li~aL~~ 529 (985)
..++.++|.++|+ .+.. ... +.+|++++ .++|++|||+++++|.+
T Consensus 431 ~~~~~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~~~~~~~~~~lRis~~~~~~t~edi~~~~~~l~~ 497 (504)
T 2okj_A 431 RGVPDSPQRREKLHKVAPKIKALMMESGTTMVGYQPQGDKANFFRMVISNPAATQSDIDFLIEEIER 497 (504)
T ss_dssp SSCCCCHHHHHHHTTHHHHHHHHHHHHTSCEEEEEEETTEEEEEEECCCCTTCCHHHHHHHHHHHHH
T ss_pred cccccchhhHHHHHHHHHHHHHHHHhCCcEEEEeeEECCceEEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 3578889999996 4432 222 57999996 89999999999999874
|
| >1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal phosphate, structural PSI, protein structure initiative; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB: 1i29_A* 1jf9_A* 1kmk_A* 1c0n_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=3.2e-21 Score=221.37 Aligned_cols=307 Identities=17% Similarity=0.123 Sum_probs=219.0
Q ss_pred hHHHHHHHHHHHHHHhcCC-CCcceeeccchHHHHHHHHHHhhh-hcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEE
Q 001989 208 GRLESLLNFQTMIADLTGL-PMSNASLLDEGTAAAEAMAMCNNI-QKGKKKTFIIASNCHPQTIDICITRADGFDIKVVV 285 (985)
Q Consensus 208 g~l~~i~e~q~~ia~L~g~-~~~~~sl~~~~ta~~ea~~~a~~~-~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~ 285 (985)
+..+.+.++++.+|+++|. ++.++.+++|+|.++++++.+++. ..++||+|++++..|++....+...++..|++++.
T Consensus 64 ~~~~~~~~l~~~la~~~~~~~~~~v~~~~g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~ 143 (406)
T 1kmj_A 64 QATEKMENVRKRASLFINARSAEELVFVRGTTEGINLVANSWGNSNVRAGDNIIISQMEHHANIVPWQMLCARVGAELRV 143 (406)
T ss_dssp HHHHHHHHHHHHHHHHTTCSCGGGEEEESSHHHHHHHHHHHTHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHHTCEEEE
T ss_pred HHHHHHHHHHHHHHHHcCCCCCCeEEEeCChhHHHHHHHHHhhhhcCCCCCEEEEecccchHHHHHHHHHHHhCCCEEEE
Confidence 3456678899999999999 677899999999888888776530 01378999999999999887776655556888888
Q ss_pred eCc--------hhhhc-cCCCEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCC-CCCcccceEEEe
Q 001989 286 SDL--------KDIDY-KSGDVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILK-PPGELGADIVVG 354 (985)
Q Consensus 286 v~~--------~~l~~-l~~~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~-~~~~~GaDi~v~ 354 (985)
++. ++|++ +++++++|++.+| |++|.+.|+++|.++||++|+++++| +.++.|... ...++|+|++++
T Consensus 144 ~~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D-~~~~~g~~~~~~~~~~~d~~~~ 222 (406)
T 1kmj_A 144 IPLNPDGTLQLETLPTLFDEKTRLLAITHVSNVLGTENPLAEMITLAHQHGAKVLVD-GAQAVMHHPVDVQALDCDFYVF 222 (406)
T ss_dssp ECBCTTSCBCGGGHHHHCCTTEEEEEEESBCTTTCCBCCHHHHHHHHHHTTCEEEEE-CTTTTTTSCCCHHHHTCSEEEE
T ss_pred EecCCCCCcCHHHHHHHhccCCeEEEEeCCCccccCcCCHHHHHHHHHHcCCEEEEE-chhhcCCCCCcccccCCCEEEE
Confidence 764 45666 7889999999987 78999999999999999999999995 344555332 223578999999
Q ss_pred cC-ccccccCCCCCCcEEEEEEchhhHhcCCCceeeeee-cCCCCcceeeecccccccccccccCCCccchhHHHHHHHH
Q 001989 355 SA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSI-DSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAA 432 (985)
Q Consensus 355 s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~-d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa 432 (985)
|. |.| |+||+|++++++++.+.+.....|++. +.. .......+ .....+.+.+|+++ ....++.++
T Consensus 223 s~~K~~------g~~G~G~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~---~~~~a~~~a 290 (406)
T 1kmj_A 223 SGHKLY------GPTGIGILYVKEALLQEMPPWEGGGSMIATV-SLSEGTTW--TKAPWRFEAGTPNT---GGIIGLGAA 290 (406)
T ss_dssp EGGGTT------SCTTCEEEEECHHHHHHCCCSSCSTTSEEEE-ETTTEEEE--CCTTGGGCCSSCCH---HHHHHHHHH
T ss_pred Echhcc------CCCCcEEEEEeHHHHhhcCCcccCCCceeec-cccccccc--CCCchhccCCCCCH---HHHHHHHHH
Confidence 98 644 334589999999998887654444210 000 00000000 11122334455554 233333333
Q ss_pred HHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCC-CcceEEEecCC--HHHHHHHHHHcCceeeeec------
Q 001989 433 MYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLP-FFDTVKVKCAD--AHAIASAAYKIEMNLRVVD------ 503 (985)
Q Consensus 433 ~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~-~~~~~~~~~~~--~~~v~~~L~~~GI~~~~~~------ 503 (985)
+ .++...+++++.++..++++++.+.|+++.++++..+. ...-+.+..++ ..++.+.|.++||.+....
T Consensus 291 l--~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~ 368 (406)
T 1kmj_A 291 L--EYVSALGLNNIAEYEQNLMHYALSQLESVPDLTLYGPQNRLGVIAFNLGKHHAYDVGSFLDNYGIAVRTGHHCAMPL 368 (406)
T ss_dssp H--HHHHHHCHHHHHHHHHHHHHHHHHHHTTSTTEEEESCTTCCSEEEEEETTCCHHHHHHHHHHTTEECEEECTTCHHH
T ss_pred H--HHHHHcCHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCCcCCEEEEEECCCCHHHHHHHHhhCCcEEEeccccchHH
Confidence 3 44444578899999999999999999998338887431 33345555554 7889999999999875421
Q ss_pred ------CCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 504 ------SNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 504 ------~~~lris~t~~~t~edId~li~aL~~ 529 (985)
++.+|++++.++|++|+++++++|..
T Consensus 369 ~~~~g~~~~iRis~~~~~t~~~i~~~~~~l~~ 400 (406)
T 1kmj_A 369 MAYYNVPAMCRASLAMYNTHEEVDRLVTGLQR 400 (406)
T ss_dssp HHHTTCSCEEEEECCTTCCHHHHHHHHHHHHH
T ss_pred HHhcCCCCeEEEEeecCCCHHHHHHHHHHHHH
Confidence 47899999999999999999999974
|
| >1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6, pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A {Pseudomonas fluorescens} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.90 E-value=1.1e-21 Score=226.61 Aligned_cols=306 Identities=14% Similarity=0.139 Sum_probs=220.7
Q ss_pred hHHHHHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHh-hhh--cCCCCE-EEEcCCCChhHHHHHHHhhcCC--Ce
Q 001989 208 GRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCN-NIQ--KGKKKT-FIIASNCHPQTIDICITRADGF--DI 281 (985)
Q Consensus 208 g~l~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~-~~~--~~~g~~-Vlv~~~~H~s~~~~~~~~a~~~--gi 281 (985)
|..+.+.++++.+++++|.++.++.++.|+|.++++++.+. .+. .++||+ |+++...|+++...+..+++.. |+
T Consensus 68 ~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~al~~al~~~~~~~~~~~~gd~vii~~~~~~~~~~~~~~~~~~~~~~g~ 147 (416)
T 1qz9_A 68 GWRDLSERLGNRLATLIGARDGEVVVTDTTSINLFKVLSAALRVQATRSPERRVIVTETSNFPTDLYIAEGLADMLQQGY 147 (416)
T ss_dssp SGGGHHHHHHHHHHTTTTCCTTSEEECSCHHHHHHHHHHHHHHHHHHHSTTCCEEEEETTSCHHHHHHHHHHHHHHCSSC
T ss_pred hHHHHHHHHHHHHHHHcCCCcccEEEeCChhHHHHHHHHhhcccccccCCCCcEEEEcCCCCCchHHHHHHHHHHhcCCc
Confidence 44467788999999999998778888899998887666543 220 026775 6777889999888776544333 88
Q ss_pred EEEEeC-chhhhc-cCCCEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCCC-CCcccceEEEecC-
Q 001989 282 KVVVSD-LKDIDY-KSGDVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKP-PGELGADIVVGSA- 356 (985)
Q Consensus 282 ~v~~v~-~~~l~~-l~~~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~~-~~~~GaDi~v~s~- 356 (985)
+++.++ +++|++ +++++++|++.+| |.+|.+.|+++|.++||++|+++++| ..++.|.... ..++|+|++++|.
T Consensus 148 ~~~~v~~~~~l~~~i~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D-~a~~~g~~~~~~~~~~~d~~~~s~~ 226 (416)
T 1qz9_A 148 TLRLVDSPEELPQAIDQDTAVVMLTHVNYKTGYMHDMQALTALSHECGALAIWD-LAHSAGAVPVDLHQAGADYAIGCTY 226 (416)
T ss_dssp EEEEESSGGGHHHHCSTTEEEEEEESBCTTTCBBCCHHHHHHHHHHHTCEEEEE-CTTTTTTSCCCHHHHTCSEEEECSS
T ss_pred eEEEeCcHHHHHHHhCCCceEEEEeccccCcccccCHHHHHHHHHHcCCEEEEE-ccccccCcCCChhhcCCCEEEecCc
Confidence 999988 688887 8889999999987 78999999999999999999999995 3455554322 2357899999998
Q ss_pred ccccccCCCCCCcE-EEEEEchhhHhcCCCceeeee-ecC--CCCcceeeecccccccccccccCCCccchhHHHHHHHH
Q 001989 357 QRFGVPMGYGGPHA-AFLATSQEYKRMMPGRIVGVS-IDS--SGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAA 432 (985)
Q Consensus 357 k~lg~P~~~GGP~~-G~l~~~~~~~~~lp~~~vG~t-~d~--~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa 432 (985)
|+| +|||++ |++++++++.+.+.+...|+. ... +....|.+ .....+...+|.|+ ....++.++
T Consensus 227 K~l-----~~g~~~~g~l~~~~~~~~~l~~~~~g~~g~~~~~~~~~~~~~----~~~~~~~~~~~~~~---~~~~a~~~a 294 (416)
T 1qz9_A 227 KYL-----NGGPGSQAFVWVSPQLCDLVPQPLSGWFGHSRQFAMEPRYEP----SNGIARYLCGTQPI---TSLAMVECG 294 (416)
T ss_dssp STT-----CCCTTCCCEEEECTTTTTTSCCSCCCGGGBCTTSCCCSSCCB----CSSGGGGCCSCCCH---HHHHHHHHH
T ss_pred ccC-----CCCCCCeEEEEECHHHHhccCCCccccCccccccCCCCccCC----CcchHHhcCCCCCH---HHHHHHHHH
Confidence 665 356777 999999998877755444431 000 00000110 00111223345554 333344444
Q ss_pred HHHHHhCcchHHHHHHHHHHHHHHHHHHHhcC----CCeEEcCCC----CcceEEEecCCHHHHHHHHHHcCceeeeecC
Q 001989 433 MYAVYHGPEGLKTIAQRVHGLAGTFALGLKKL----GTVEVQGLP----FFDTVKVKCADAHAIASAAYKIEMNLRVVDS 504 (985)
Q Consensus 433 ~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~----g~~~~~~~~----~~~~~~~~~~~~~~v~~~L~~~GI~~~~~~~ 504 (985)
+ ..+..+|++++.++..++++++.+.|+++ | +++..+. ....+.+..++..++.+.|.++||.+.....
T Consensus 295 l--~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~~~~~~~ 371 (416)
T 1qz9_A 295 L--DVFAQTDMASLRRKSLALTDLFIELVEQRCAAHE-LTLVTPREHAKRGSHVSFEHPEGYAVIQALIDRGVIGDYREP 371 (416)
T ss_dssp H--HHHTTSCHHHHHHHHHHHHHHHHHHHHHHHTTSC-CEECSCSSGGGBCSEEEEECTTHHHHHHHHHTTTEECEEETT
T ss_pred H--HHHHhcCHHHHHHHHHHHHHHHHHHHHhhccCCC-eEEeCCCCHHHcCCEEEEecCCHHHHHHHHHhCCcEeccCCC
Confidence 4 55666789999999999999999999986 5 8886432 2345667766678899999999998865456
Q ss_pred CeEEEEec-cCCCHHHHHHHHHHHhC
Q 001989 505 NTVTASFD-ETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 505 ~~lris~t-~~~t~edId~li~aL~~ 529 (985)
+.+|++++ .++|++|+++++++|..
T Consensus 372 ~~lRis~~~~~~t~~~i~~~~~~l~~ 397 (416)
T 1qz9_A 372 RIMRFGFTPLYTTFTEVWDAVQILGE 397 (416)
T ss_dssp TEEEEECCTTTCCHHHHHHHHHHHHH
T ss_pred CeEEEeCcccCCCHHHHHHHHHHHHH
Confidence 89999998 58999999999999974
|
| >4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=2e-21 Score=220.79 Aligned_cols=292 Identities=16% Similarity=0.130 Sum_probs=216.1
Q ss_pred HhhhHHHHHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhh-hcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEE
Q 001989 205 IAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNI-QKGKKKTFIIASNCHPQTIDICITRADGFDIKV 283 (985)
Q Consensus 205 ~sqg~l~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~-~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v 283 (985)
...+..+.+.++++.+++++|.++.++.+++|+|.+++.++.++.. ..++||+|+++...|+++...++.. +..|+++
T Consensus 37 ~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~~~a~~~~~~~~~~~~~~~gd~vi~~~~~~~~~~~~~~~~-~~~g~~~ 115 (382)
T 4hvk_A 37 YGFKAREAVQEAREKVAKLVNGGGGTVVFTSGATEANNLAIIGYAMRNARKGKHILVSAVEHMSVINPAKFL-QKQGFEV 115 (382)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCTTEEEEEESSHHHHHHHHHHHHHHHHGGGCCEEEEETTCCHHHHHHHHHH-HHTTCEE
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCcCeEEEECCchHHHHHHHHHhhhhhcCCCCEEEECCCCcHHHHHHHHHH-HhcCCEE
Confidence 4566778888999999999999988899999999888877766532 0138899999999999999887654 3468899
Q ss_pred EEeCc--------hhhhc-cCCCEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCC-CCCcccceEE
Q 001989 284 VVSDL--------KDIDY-KSGDVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILK-PPGELGADIV 352 (985)
Q Consensus 284 ~~v~~--------~~l~~-l~~~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~-~~~~~GaDi~ 352 (985)
+.++. ++|++ +++++++|++.+| |++|.+.|+++|.++||++|+ +++| +.++.+... +...+|+|++
T Consensus 116 ~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~-li~D-~a~~~~~~~~~~~~~~~d~~ 193 (382)
T 4hvk_A 116 EYIPVGKYGEVDVSFIDQKLRDDTILVSVQHANNEIGTIQPVEEISEVLAGKAA-LHID-ATASVGQIEVDVEKIGADML 193 (382)
T ss_dssp EEECBCTTSCBCHHHHHHHCCTTEEEEECCSBCTTTCBBCCHHHHHHHHSSSSE-EEEE-CTTTBTTBCCCHHHHTCSEE
T ss_pred EEeccCCCCCcCHHHHHHHhccCceEEEEECCCCCceeeCCHHHHHHHHHHcCE-EEEE-hHHhcCCCCCCchhcCCCEE
Confidence 88864 35666 7889999999887 789999999999999999999 8885 345555443 2245789999
Q ss_pred EecCccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHH
Q 001989 353 VGSAQRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAA 432 (985)
Q Consensus 353 v~s~k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa 432 (985)
+++.+|+. |++|+|+++++++. .+.+.+.|+ . +..+...+|.|. ....++.++
T Consensus 194 ~~s~~K~~-----g~~g~g~~~~~~~~--~~~~~~~~~------~-----------~~~~~~~~~~~~---~~~~~~~~a 246 (382)
T 4hvk_A 194 TISSNDIY-----GPKGVGALWIRKEA--KLQPVILGG------G-----------QENGLRSGSENV---PSIVGFGKA 246 (382)
T ss_dssp EEESGGGT-----SCTTCEEEEEETTC--CCCCSSCSS------C-----------TGGGTSCSCCCH---HHHHHHHHH
T ss_pred EEeHHHhc-----CCCceEEEEEcCcc--CcCcccccC------C-----------CcCccccCCcCH---HHHHHHHHH
Confidence 99984353 33457899988764 333222221 0 112233455554 344444444
Q ss_pred HHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCC--C-cceEEEecCC--HHHHHHHHHHcCceeeeec----
Q 001989 433 MYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLP--F-FDTVKVKCAD--AHAIASAAYKIEMNLRVVD---- 503 (985)
Q Consensus 433 ~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~--~-~~~~~~~~~~--~~~v~~~L~~~GI~~~~~~---- 503 (985)
+ .+ ..++++++.++..++++++.+.|++++++++...+ . .+.+.+..++ ..++.+.|.++||.++...
T Consensus 247 l--~~-~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~ 323 (382)
T 4hvk_A 247 A--EI-TAMEWREEAERLRRLRDRIIDNVLKIEESYLNGHPEKRLPNNVNVRFSYIEGESIVLSLDMAGIQASTGSACSS 323 (382)
T ss_dssp H--HH-HHHHHHHHHHHHHHHHHHHHHHHTTSTTEEECSCSSSBCTTEEEEEETTCCHHHHHHHHHHTTCBCBCC-----
T ss_pred H--HH-HHhhHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCccccCCCEEEEEECCCCHHHHHHHHHHCCEEEeeCCccCC
Confidence 4 22 23688999999999999999999998448887432 1 2345566554 8899999999999875311
Q ss_pred -------------------CCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 504 -------------------SNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 504 -------------------~~~lris~t~~~t~edId~li~aL~~ 529 (985)
.+.+|++++..+|+||+++++++|++
T Consensus 324 ~~~~~~~~~~~~g~~~~~~~~~iRl~~~~~~t~e~i~~~~~~l~~ 368 (382)
T 4hvk_A 324 KTLQPSHVLMACGLKHEEAHGTLLLTLGRYNTDEDVDRLLEVLPG 368 (382)
T ss_dssp ---CCCHHHHHTTCCHHHHHTEEEEECCTTCCHHHHHHHHHHHHH
T ss_pred CCCcchHHHHHcCCChhhcCCeEEEEcCCCCCHHHHHHHHHHHHH
Confidence 47899999999999999999999985
|
| >3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} SCOP: c.67.1.3 PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=3.4e-22 Score=228.47 Aligned_cols=318 Identities=11% Similarity=0.091 Sum_probs=214.6
Q ss_pred HHHHHHHHHHHHHHhCCCcc--ceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCc--ccHHHHHHCCcEEEE
Q 001989 631 QEMFNNLGEWLCTITGFDSF--SLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHG--TNPATAAMCGMKIVS 706 (985)
Q Consensus 631 ~~~~~e~~~~la~l~G~~~~--~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg--~~~~~a~~~G~~vv~ 706 (985)
.+...++++++++++|.+.. .++.++|++|++.++.++. +++++||++...|. .....++..|++++.
T Consensus 55 ~~~~~~l~~~la~~~~~~~~~~v~~~~gg~~al~~~~~~~~--------~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~ 126 (393)
T 3kgw_A 55 LQIMEEIKQGIQYVFQTRNPLTLVVSGSGHCAMETALFNLL--------EPGDSFLTGTNGIWGMRAAEIADRIGARVHQ 126 (393)
T ss_dssp HHHHHHHHHHHHHHHTCCCSEEEEESCCTTTHHHHHHHHHC--------CTTCEEEEEESSHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHHHHHhCCCCCcEEEEeCCcHHHHHHHHHhcC--------CCCCEEEEEeCCchhHHHHHHHHHcCCceEE
Confidence 45667889999999998753 3566778877755554431 47889999754331 113446788999999
Q ss_pred EcCCCCCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCccCCc
Q 001989 707 VGTDAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIGAD 785 (985)
Q Consensus 707 v~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~g~D 785 (985)
+|.++++.+|+++|++++++ .++++|++++| |++|.+. |+++|.++|+++|+++++|++|..+...+ ....+++|
T Consensus 127 ~~~~~~~~~d~~~l~~~i~~--~~~~~v~~~~~~nptG~~~-~l~~i~~l~~~~~~~li~De~~~~g~~~~-~~~~~~~d 202 (393)
T 3kgw_A 127 MIKKPGEHYTLQEVEEGLAQ--HKPVLLFLVHGESSTGVVQ-PLDGFGELCHRYQCLLLVDSVASLGGVPI-YMDQQGID 202 (393)
T ss_dssp EECCTTCCCCHHHHHHHHHH--HCCSEEEEESEETTTTEEC-CCTTHHHHHHHTTCEEEEECTTTTTTSCC-CTTTTTCC
T ss_pred EeCCCCCCCCHHHHHHHHhh--CCCcEEEEeccCCcchhhc-cHHHHHHHHHHcCCEEEEECCccccCccc-chhhcCCC
Confidence 99988889999999999982 27889999998 5799998 89999999999999999999985332221 23456899
Q ss_pred EEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCcccc---CCCC----CCC---CCCCCCCCCCCcchhhhHHHHH
Q 001989 786 VCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVS---TGGI----PAP---EKSQPLGTIAAAPWGSALILPI 855 (985)
Q Consensus 786 i~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~---~~~~----~~~---~~~~~~~~i~s~~~g~~~~~~~ 855 (985)
++++++||+|+ |++|+|++++++++.+.+.....++ ..+. ..+ .......... +...+.+
T Consensus 203 ~~~~s~sK~~~-----~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~a 272 (393)
T 3kgw_A 203 IMYSSSQKVLN-----APPGISLISFNDKAKYKVYSRKTKPVSFYTDITYLAKLWGCEGETRVIHHTT-----PVTSLYC 272 (393)
T ss_dssp EEEEESSSTTC-----CCSSCEEEEECHHHHHHHHTCSSCCSCSTTCHHHHHHHTTCSSSCCCCCCCC-----CHHHHHH
T ss_pred EEEecCccccc-----CCCceeEEEECHHHHHHHhccCCCCCceeecHHHHHHhhhhccccCCCCCCC-----CHHHHHH
Confidence 99999999984 4467999999877654331110000 0000 000 0000000101 1122333
Q ss_pred HHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHC-CCc
Q 001989 856 SYTYIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDY-GFH 933 (985)
Q Consensus 856 a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~-Gi~ 933 (985)
+.+.+..+..+++.+..++..++++++.+.|++ ++++..+.........+.+.++ .+.+..++.++|.++ ||.
T Consensus 273 ~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~~~~gi~ 347 (393)
T 3kgw_A 273 LRESLALIAEQGLENCWRRHREATAHLHKHLQEMGLKFFVKDPEIRLPTITTVTVP-----AGYNWRDIVSYVLDHFSIE 347 (393)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCBSSSSGGGBCSSEEEEECC-----TTBCHHHHHHHHHHHHCEE
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCeeccCChhhcCCeEEEEeCC-----CCCCHHHHHHHHHHhCCEE
Confidence 345566666677888888899999999999987 4554321110011112234543 246788999999988 998
Q ss_pred cCCCCCC-CCCEEEEec-cCCCCHHHHHHHHccCChhHHHHhhccC
Q 001989 934 GPTMSWP-VPGTLMIEP-TESESKSWTGIVMLSSPSEKKLHRLKMG 977 (985)
Q Consensus 934 ~~~~~~p-~~~~lris~-t~~~t~eeId~~~~~~~l~~~~~~~~~~ 977 (985)
+.....+ ..+.+||++ ...+|++|+++ +++.|++++++++..
T Consensus 348 v~~g~~~~~~~~iRi~~~~~~~~~~~i~~--~~~~l~~~l~~~~~~ 391 (393)
T 3kgw_A 348 ISGGLGPTEERVLRIGLLGYNATTENVDR--VAEALREALQHCPKN 391 (393)
T ss_dssp CBCCCGGGTTTEEEEECCGGGCCHHHHHH--HHHHHHHHHHHSCBC
T ss_pred EeCCcccCCCCEEEEEecccCCCHHHHHH--HHHHHHHHHHhhhhc
Confidence 7643222 357999998 66679999999 889999999887653
|
| >1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=3e-21 Score=219.83 Aligned_cols=307 Identities=16% Similarity=0.185 Sum_probs=210.3
Q ss_pred HHHHHHHHHHHHHHHhCCCccc-eecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHH---HHCCcEEE
Q 001989 630 YQEMFNNLGEWLCTITGFDSFS-LQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATA---AMCGMKIV 705 (985)
Q Consensus 630 ~~~~~~e~~~~la~l~G~~~~~-~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a---~~~G~~vv 705 (985)
..+...++++++++++|.+... ++.++|++|+..++.++..+ + ..++++|++++..|..+...+ +..|++++
T Consensus 42 ~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a~~~~~~~~~~~---~-~~~gd~vl~~~~~~~~~~~~~~~~~~~g~~~~ 117 (384)
T 1eg5_A 42 ANLHMEKAREKVAKVLGVSPSEIFFTSCATESINWILKTVAET---F-EKRKRTIITTPIEHKAVLETMKYLSMKGFKVK 117 (384)
T ss_dssp HHHHHHHHHHHHHHHHTSCGGGEEEESCHHHHHHHHHHHHHHH---T-TTTCCEEEECTTSCHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHHhhhhh---c-cCCCCEEEECCCCchHHHHHHHHHHhcCCEEE
Confidence 3455778999999999987543 55577777776665555421 0 136789999988776665444 67899999
Q ss_pred EEcCCCCCCCCHHHHHHHHHhcCCCEEEEEEEcCC-CccccccCHHHHHHHHHHcC--CEEEEEccccccccCCCCCCcc
Q 001989 706 SVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPS-THGVYEEGIDEICKIIHDNG--GQVYMDGANMNAQVGLTSPGYI 782 (985)
Q Consensus 706 ~v~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~pn-~~G~i~~di~eI~~la~~~g--alliVD~a~~~~~~~l~~pg~~ 782 (985)
.+|+++++.+|+++|+++++ +++++|++++|+ ++|.+. |+++|.++|+++| +++|+|++|..+...+ ....+
T Consensus 118 ~v~~~~~~~~d~~~l~~~i~---~~~~~v~~~~~~nptG~~~-~~~~i~~l~~~~~~~~~li~Dea~~~~~~~~-~~~~~ 192 (384)
T 1eg5_A 118 YVPVDSRGVVKLEELEKLVD---EDTFLVSIMAANNEVGTIQ-PVEDVTRIVKKKNKETLVHVDAVQTIGKIPF-SLEKL 192 (384)
T ss_dssp ECCBCTTSCBCHHHHHHHCC---TTEEEEEEESBCTTTCBBC-CHHHHHHHHHHHCTTCEEEEECTTTTTTSCC-CCTTT
T ss_pred EEccCCCCccCHHHHHHHhC---CCCeEEEEECCCCCccccc-CHHHHHHHHHhcCCceEEEEEhhhhcCCccc-Cchhc
Confidence 99998889999999999997 789999999985 699998 8999999999999 9999999986332111 22345
Q ss_pred CCcEEEeCCcccccccCCCCCCceEEEEEcccc--cCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHH
Q 001989 783 GADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHL--APFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYI 860 (985)
Q Consensus 783 g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l--~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l 860 (985)
+.|++++|+||+++ .+|+|++++++++ .+.+.+. + .. ....+++. +.....++++++
T Consensus 193 ~~di~~~s~sK~~g------~~G~G~~~~~~~~~~~~~~~~~--~--~~-----~~~~~~~~------~~~~~~a~~~al 251 (384)
T 1eg5_A 193 EVDYASFSAHKFHG------PKGVGITYIRKGVPIRPLIHGG--G--QE-----RGLRSGTQ------NVPGIVGAARAM 251 (384)
T ss_dssp CCSEEEEEGGGGTS------CTTCEEEEECTTSCCCCSBCSS--C--TT-----TTTBCSCC------CHHHHHHHHHHH
T ss_pred CCCEEEecHHHhcC------CCceEEEEEcCCCccccccccC--c--cc-----ccccCCCC------ChHHHHHHHHHH
Confidence 78999999999863 3468999998875 2222110 0 00 00011111 112222334445
Q ss_pred HHhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCC-
Q 001989 861 AMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMS- 938 (985)
Q Consensus 861 ~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~- 938 (985)
..+ .+++.+..++..++++++.+.|++ ++++.. .+.+.....+.+.++ +.+..++.+.|.++||.+....
T Consensus 252 ~~~-~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~-~~~~~~~~~~~~~~~------~~~~~~~~~~l~~~gi~v~~g~~ 323 (384)
T 1eg5_A 252 EIA-VEELSEAAKHMEKLRSKLVSGLMNLGAHIIT-PLEISLPNTLSVSFP------NIRGSTLQNLLSGYGIYVSTSSA 323 (384)
T ss_dssp HHH-HHTHHHHHHHHHHHHHHHHHHHHTTTCEECS-CTTSBCTTEEEEECT------TCCHHHHHHHHHHTTEECBC---
T ss_pred HHH-HHhHHHHHHHHHHHHHHHHHHhCCCCeEEeC-CcccCCCCEEEEEeC------CCCHHHHHHHHhhCCeEEecccc
Confidence 443 345677777888999999999987 443321 111111122334443 3568899999999999875411
Q ss_pred C--------------CC-----CCEEEEeccCCCCHHHHHHHHccCChhHHHHhhcc
Q 001989 939 W--------------PV-----PGTLMIEPTESESKSWTGIVMLSSPSEKKLHRLKM 976 (985)
Q Consensus 939 ~--------------p~-----~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~~~ 976 (985)
+ +. .+.+||+++..+|++|+++ +++.|++++++++.
T Consensus 324 ~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~--~~~~l~~~~~~~~~ 378 (384)
T 1eg5_A 324 CTSKDERLRHVLDAMGVDRRIAQGAIRISLCKYNTEEEVDY--FLKKIEEILSFLDL 378 (384)
T ss_dssp ---------CHHHHTTCCHHHHHHEEEEECCTTCCHHHHHH--HHHHHHHHHHHC--
T ss_pred ccCCCCcchHHHHHcCCChhhcCCeEEEECCCCCCHHHHHH--HHHHHHHHHHHHHh
Confidence 1 11 2689999999999999999 88999999988764
|
| >3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order transition, phosphate-loop, pyridoxal phospha selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A {Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=6.5e-22 Score=227.35 Aligned_cols=373 Identities=12% Similarity=0.062 Sum_probs=238.0
Q ss_pred CCccccCCCCHHHHHHHHHHHhccccCccc---------ccccccc-cccCCCccccccccccccccccCCCCchhhhhh
Q 001989 560 THPVFNKYHTEHELLRYIHLLQSKELSLCH---------SMIPLGS-CTMKLNATTEMMPVTWPSFANIHPFAPADQAQG 629 (985)
Q Consensus 560 ~~p~~~~~~se~e~~~~l~~l~~~~~~~~~---------~~~~lG~-~t~~~~~~~~~~~~~~~~f~~~~p~~p~e~~~G 629 (985)
.+| +.|++|.+|+..|++++..|..... +.+ +|+ |++.+-...+-.. ....|...+|.. ..+++
T Consensus 22 ~~p--~~g~~~~~i~~~l~~~~~~d~~~~~~~~~~geregrv-~~~~~~~r~~g~~hg~~-~~~d~l~~~~~~--~~~~~ 95 (450)
T 3bc8_A 22 KCP--EDGWDESTLELFLHELAVMDSNNFLGNCGVGEREGRV-ASALVARRHYRFIHGIG-RSGDISAVQPKA--AGSSL 95 (450)
T ss_dssp CCC--SSCCCHHHHHHHHHHHHHTBGGGCTTCCCCSSCCCCC-SCHHHHHHTTTCCSCBC-C-------CCSB--HHHHH
T ss_pred cCC--ccCCCHHHHHHHHHHHhhCCCCccccccccCcccceE-ecccccCCccceecchh-HHHHHHHhCccc--cCCcH
Confidence 467 6899999999999999999866543 233 343 5554332222221 112333345522 33455
Q ss_pred HHHHHHHHHHHHHHHhCCCcc--ceecCcHHH-HHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEE
Q 001989 630 YQEMFNNLGEWLCTITGFDSF--SLQPNAGAA-GEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVS 706 (985)
Q Consensus 630 ~~~~~~e~~~~la~l~G~~~~--~~~~~sGa~-a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~ 706 (985)
..++.+++..++.+++|++.. .++++++|. ++.+++.++|.. . .++++||+++.+|.+..+++.+.|+..++
T Consensus 96 ~~~~e~~~~~~~~~~lGlp~~~~~~lV~GaT~~~~a~~L~aar~~----~-~~~~~viv~r~aHkSv~kAl~l~Gl~p~~ 170 (450)
T 3bc8_A 96 LNKITNSLVLNVIKLAGVHSVASCFVVPMATGMSLTLCFLTLRHK----R-PKAKYIIWPRIDQKSCFKSMVTAGFEPVV 170 (450)
T ss_dssp HHHHHHHHHHHHHHHHTCTTCCEEEEESSCHHHHHHHHHHHHHHH----C-TTCCEEEEECCCCHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHHHHHhCCCCCCceEEEECCHHHHHHHHHHHHcchh----h-cCCCEEEEECCcHHHHHHHHHHcCCeeEE
Confidence 667788899999999999864 255555553 343444444532 1 23578999999999999999999999998
Q ss_pred EcC---CCCCCCCHHHHHHHHHhcCCCEEEEEEEcCCCcc--ccccCHHHHHHHHHHcCCEEEEEccccccccCCCC--C
Q 001989 707 VGT---DAKGNINIEELRKAAEANRDNLSTLMVTYPSTHG--VYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTS--P 779 (985)
Q Consensus 707 v~~---d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~pn~~G--~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~--p 779 (985)
|++ ++.+.+|+++|+++|++++.+.+++++++|+++| .++ ||++|+++||++|++||||+||.. +..+.. |
T Consensus 171 v~~~~~~~~~~id~~~le~aI~~~~~~~~~~Vv~t~t~~g~g~~d-dl~~Ia~ia~~~gi~l~VD~A~G~-~~~~~~~l~ 248 (450)
T 3bc8_A 171 IENVLEGDELRTDLKAVEAKIQELGPEHILCLHSTTACFAPRVPD-RLEELAVICANYDIPHVVNNAYGL-QSSKCMHLI 248 (450)
T ss_dssp ECCEEETTEEECCHHHHHHHHHHHCGGGEEEEEEESSCCTTBCCC-CHHHHHHHHHHHTCCEEEECTTTT-TCHHHHHHH
T ss_pred EEeeecCccCCcCHHHHHHHHHhcCCCCEEEEEEECCcCCCceec-CHHHHHHHHHHCCCeEEEECCCch-hhhhhHhHH
Confidence 876 4458899999999998654234566667787766 778 999999999999999999998742 111111 1
Q ss_pred -C--c-cCCcEEEeCCcccccccCCCCCCceEEEEEcc-cccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHH
Q 001989 780 -G--Y-IGADVCHLNLHKTFCIPHGGGGPGMGPIGVKK-HLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILP 854 (985)
Q Consensus 780 -g--~-~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~-~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~ 854 (985)
. . .++|+++.|.|||+..|++ .+++.+++ +..+.+...+.+ ..++ ++ ..
T Consensus 249 ~~a~~~~~AD~~v~S~HK~l~a~~~-----~~~l~~rd~~~~~~~~~~~~g---------------~~s~----Sp--sL 302 (450)
T 3bc8_A 249 QQGARVGRIDAFVQSLDKNFMVPVG-----GAIIAGFNEPFIQDISKMYPG---------------RASA----SP--SL 302 (450)
T ss_dssp HHHHHHSCCCEEEEEHHHHHSCCSS-----CEEEEESCHHHHHHHHHHSCS---------------CBCS----HH--HH
T ss_pred HHHhcccCCCEEEECCccCCCchhc-----cEEEEecCHHHHHHHHHHhhc---------------CCcc----cH--HH
Confidence 1 2 2799999999999977654 35676653 222222100000 0011 12 24
Q ss_pred HHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc-----cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHH
Q 001989 855 ISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK-----HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMD 929 (985)
Q Consensus 855 ~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~-----g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~ 929 (985)
..|+.+..+|.+|+++..++..+++++++++|++ +..++- .+.... ...+.++.+......+...+.-.+..
T Consensus 303 ~l~~~l~~~G~~g~~~~i~~~~~~a~~l~~~l~~~~~~~g~~~l~-~~~~~~--~~~~~l~~~~~~~~~D~tkl~i~~~~ 379 (450)
T 3bc8_A 303 DVLITLLSLGCSGYRKLLKERKEMFVYLSTQLKKLAEAHNERLLQ-TPHNPI--SLAMTLKTIDGHHDKAVTQLGSMLFT 379 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCBCC-CTTCSS--EEEEECTTTSSSSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhcCceecC-CccCCC--cceeecccccccccCCCceeEEEecC
Confidence 5677777889999999999999999999999975 333321 110011 23343332211112345566666666
Q ss_pred CCCccCC-------------------C--CCCCCCEEEEeccCCCCHHHHHHHHccCChhHHHHhhcc
Q 001989 930 YGFHGPT-------------------M--SWPVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRLKM 976 (985)
Q Consensus 930 ~Gi~~~~-------------------~--~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~~~ 976 (985)
.|+-... + ...-...+.+..+...+++|+++ ++++|++++.+.|+
T Consensus 380 ~g~sG~~v~~~~~~~~~~~~~l~~~gi~~E~~~~~~i~~~~sig~~~~di~~--l~~~L~~~~~~~~~ 445 (450)
T 3bc8_A 380 RQVSGARAVPLGNVQTVSGHTFRGFMSHADNYPCAYLNAAAAIGMKMQDVDL--FIKRLDKCLNIVRK 445 (450)
T ss_dssp TTCCSCEEECSCCEEEETTEEEETTTTTSSCCSSCEEEEECCTTCCHHHHHH--HHHHHHHHHHHHHH
T ss_pred CCCccceeeecccccchhHHHHHHcCCeeecCCCCcEEEEecCCCCHHHHHH--HHHHHHHHHHHHHh
Confidence 5542110 0 00113678888899999999999 77899998776654
|
| >4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=1.8e-21 Score=221.65 Aligned_cols=311 Identities=13% Similarity=0.107 Sum_probs=211.7
Q ss_pred hhHHHHHHHHHHHHHHHhCCCcc-ceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHH---HCCcE
Q 001989 628 QGYQEMFNNLGEWLCTITGFDSF-SLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAA---MCGMK 703 (985)
Q Consensus 628 ~G~~~~~~e~~~~la~l~G~~~~-~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~---~~G~~ 703 (985)
.+..+...++++++++++|.+.. .++.++|++|+..++.++..+.. .++++|++++..|.++...+. ..|++
T Consensus 39 ~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a~~~~~~~l~~~~~----~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~ 114 (382)
T 4eb5_A 39 FKAREAVQEAREKVAKLVNGGGGTVVFTSGATEANNLAIIGYAMRNA----RKGKHILVSAVEHMSVINPAKFLQKQGFE 114 (382)
T ss_dssp HHHHHHHHHHHHHHHHHHTCTTEEEEEESSHHHHHHHHHHHHHHHHG----GGCCEEEEETTCCHHHHHHHHHHTTTTCE
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCeEEEcCchHHHHHHHHHHHHhhcc----CCCCEEEECCCcchHHHHHHHHHHhCCcE
Confidence 45567788999999999998753 35567778887666665542111 256899999887876655543 36999
Q ss_pred EEEEcCCCCCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCcc
Q 001989 704 IVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYI 782 (985)
Q Consensus 704 vv~v~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~ 782 (985)
++.+|+++++.+|+++|+++++ +++++|++++| |++|.+. |+++|.++|+++|++ ++|++|..+...+ ....+
T Consensus 115 ~~~v~~~~~~~~d~~~l~~~i~---~~~~~v~~~~~~nptG~~~-~l~~i~~l~~~~~~~-i~D~a~~~g~~~~-~~~~~ 188 (382)
T 4eb5_A 115 VEYIPVGKYGEVDVSFIDQKLR---DDTILVSVQHANNEIGTIQ-PVEEISEVLAGKAAL-HIDATASVGQIEV-DVEKI 188 (382)
T ss_dssp EEEECBCTTSCBCHHHHHHHCC---TTEEEEECCSBCTTTCBBC-CHHHHHHHHTTSSEE-EEECTTTBTTBCC-CHHHH
T ss_pred EEEeccCCCCccCHHHHHHHhc---CCCeEEEEeccCCCccccC-CHHHHHHHHHHCCCE-EEEcchhcCCccc-Ccccc
Confidence 9999998889999999999997 68999999988 4699998 899999999999999 9999986432211 12235
Q ss_pred CCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHH
Q 001989 783 GADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAM 862 (985)
Q Consensus 783 g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~ 862 (985)
++|++++|+||+++ .+|+|+++++++. .+.....++... .... .++.. .....++.+.+..
T Consensus 189 ~~di~~~s~sK~~g------~~g~G~~~~~~~~--~l~~~~~~~~~~---~~~~--~~~~~------~~~~~~~~~al~~ 249 (382)
T 4eb5_A 189 GADMLTISSNDIYG------PKGVGALWIRKEA--KLQPVILGGGQE---NGLR--SGSEN------VPSIVGFGKAAEI 249 (382)
T ss_dssp TCSEEEEETGGGTC------CSSCEEEEEETTC--CCCCSSCSSCTG---GGTS--CSCCC------HHHHHHHHHHHHH
T ss_pred CCCEEEeehHHhcC------CCceEEEEEcccc--ccCceecCCCcc---cccc--CCCcc------HHHHHHHHHHHHH
Confidence 78999999999862 2368899888763 111111111000 0000 11111 1111222333443
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHHhhccCCeeecCCCC-ceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCC---
Q 001989 863 MGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNG-TVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMS--- 938 (985)
Q Consensus 863 lg~eGl~~~~~~~~~~a~~l~~~L~~g~~l~~~~~~~-~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~--- 938 (985)
+. +++.+..++..++++++.+.|++..++.+.++.+ ...+.+.+.++ +.+..++.++|.++||.+....
T Consensus 250 ~~-~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~l~~~gi~v~~g~~~~ 322 (382)
T 4eb5_A 250 TA-MEWREEAERLRRLRDRIIDNVLKIEESYLNGHPEKRLPNNVNVRFS------YIEGESIVLSLDMAGIQASTGSACS 322 (382)
T ss_dssp HH-HHHHHHHHHHHHHHHHHHHHHTTSTTEEECSCSSSBCTTEEEEEET------TSCHHHHHHHHHHHTCBCBCCCGGG
T ss_pred HH-HhHHHHHHHHHHHHHHHHHHHhhCCCeEEeCCcccCCCCEEEEEeC------CcCHHHHHHHHHHCCEEEecccccc
Confidence 32 4677778888899999999998622332222211 11122445554 4578899999999999875421
Q ss_pred ------------CC-----CCCEEEEeccCCCCHHHHHHHHccCChhHHHHhhcc
Q 001989 939 ------------WP-----VPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRLKM 976 (985)
Q Consensus 939 ------------~p-----~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~~~ 976 (985)
++ ..+.+||+++..+|++|+++ +++.|++++++++.
T Consensus 323 ~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~--~~~~l~~~~~~~~~ 375 (382)
T 4eb5_A 323 SKTLQPSHVLMACGLKHEEAHGTLLLTLGRYNTDEDVDR--LLEVLPGVIERLRS 375 (382)
T ss_dssp TSSCCCCHHHHHTTCCHHHHTTEEEEECCTTCCHHHHHH--HHHHHHHHHHHHHH
T ss_pred CCCCcccHHHHHcCCChhccCCeEEEECCCCCCHHHHHH--HHHHHHHHHHHHHH
Confidence 01 14789999999999999999 88999999888775
|
| >2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, PYR 5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis} SCOP: c.67.1.9 | Back alignment and structure |
|---|
Probab=99.89 E-value=3.8e-22 Score=234.17 Aligned_cols=370 Identities=11% Similarity=0.092 Sum_probs=244.2
Q ss_pred cccCCCCCH-HHHHHHHHHhCCCCHHHhhhhcCCCccccCCCCCCCCCCCCCHHHHHHHHHHHhcCCC-ccceecCCCCC
Q 001989 99 ARRHNSATP-EDQAKMSELVGLDNLDSLIDATVPKSIRIDSMKFSKFDEGLTESQMIEHMQKLASMNK-VYKSFIGMGYY 176 (985)
Q Consensus 99 ~~~~~~~~~-~~~~~ml~~~g~~~~~~l~~~~ip~~~~~~~~~lp~~~~~~se~e~~~~~~~l~~~n~-~~~~~lG~g~y 176 (985)
...++|.+= +.-+++++ +.++++++.++ ..+|| .+++++.++.+.++++...+. .|.++.+.|.+
T Consensus 26 ~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~------~~~lp--~~g~~~~~i~~~~~~~~~~~~~~yld~aa~~~~ 92 (456)
T 2z67_A 26 IEGLIPKNMEKRGELVLN-----EYLKEIEDVFN------HRKIP--ENGIDDEKIKLFLKFLSMMDTDKDPKSVRIGER 92 (456)
T ss_dssp CCSSSCHHHHHHHHHHHH-----HHTHHHHHHHH------HCSCC--SSCCCHHHHHHHHHHHHTTBGGGCTTCEECSSC
T ss_pred hhccCcHHHHHHHHHHHH-----HHHHHHHHhhc------cCCCC--CCCCCHHHHHHHHHHHHhccccccccccccccc
Confidence 456776552 33334433 44555554211 13566 478999999999988876654 47777788877
Q ss_pred CCCCcHHHHHHHHh--------CCccccccCCChhhHhhhHHHHHHHHHHHHHHhcCCCCcceeeccchH-HHHHHHHHH
Q 001989 177 NTHVPPVILRNIME--------NPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMSNASLLDEGT-AAAEAMAMC 247 (985)
Q Consensus 177 ~~~~p~~v~~~i~~--------~~~~~t~~~pyq~e~sqg~l~~i~e~q~~ia~L~g~~~~~~sl~~~~t-a~~ea~~~a 247 (985)
+..+-..+...... ..+|++ +.| ....+.+..+...++++++|+++|++.. +.+++|+| .+..+++++
T Consensus 93 ~~~v~~a~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~la~~~g~~~~-~~~t~g~te~a~~~al~~ 169 (456)
T 2z67_A 93 EARTYSKIHEELSSGFCHGIGRSGNLVD-PQP-KASGASIMYALTNKILESFFKQLGLNVH-AIATPISTGMSISLCLSA 169 (456)
T ss_dssp CCCCSCHHHHHHTTTCTTCBSBTTBTTS-CCT-TBHHHHHHHHHHHHHHHHHHHHTTCCCE-EEEESSCHHHHHHHHHHH
T ss_pred cccccccccCccccccCCCccHHHHHHh-hCc-ccccCcHHHHHHHHHHHHHHHHcCCCCC-EEEeCcHHHHHHHHHHHH
Confidence 65433332211100 011111 122 1133445778888999999999999876 88899999 444434444
Q ss_pred hhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc-----------hhhhc-c-C----CCEeEEEEEcC-CCC
Q 001989 248 NNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL-----------KDIDY-K-S----GDVCGVLVQYP-GTE 309 (985)
Q Consensus 248 ~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~-----------~~l~~-l-~----~~t~~V~v~~p-n~~ 309 (985)
.+... ++++||+++.+|+++...++. .|++++.++. ++|++ + + +++.+|++++| |.+
T Consensus 170 ~~~~~-~~~~vi~~~~~h~s~~~~~~~----~G~~~~~v~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~vv~~~~nn~t 244 (456)
T 2z67_A 170 ARKKY-GSNVVIYPYASHKSPIKAVSF----VGMNMRLVETVLDGDRVYVPVEDIENAIKKEIELGNRPCVLSTLTFFPP 244 (456)
T ss_dssp HHHHH-CCCEEEEECCCCHHHHHHHHH----TTCEEEEECCEEETTEEECCHHHHHHHHHHHHHTTCCEEEEEESSCCTT
T ss_pred HHHhc-CCCEEEEECCCcHHHHHHHHH----cCCCceEEEEeccCCCCCcCHHHHHHHHHHHhhCCCeEEEEEeCCCCCC
Confidence 32111 567899999999998887653 5888776643 45655 6 4 47788888988 679
Q ss_pred eeeccHHHHHHHHHhCCcEEEEEe-cC-ccccCCC-CCCcc--cceEEEecC-ccccccCCCCCCcEEEEEEc-hhhHhc
Q 001989 310 GEVLDYGDFIKNAHANGVKVVMAT-DL-LALTILK-PPGEL--GADIVVGSA-QRFGVPMGYGGPHAAFLATS-QEYKRM 382 (985)
Q Consensus 310 G~v~di~~I~~~a~~~galliV~a-~~-~~lg~l~-~~~~~--GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~-~~~~~~ 382 (985)
|.+.|+++|+++||++|++++||. .. .+.|... ....+ ++|++++++ |++++| .++|+++++ +++++.
T Consensus 245 G~i~~l~~I~~la~~~g~~v~vD~A~~~~~~g~~~~~~~~~~~~~D~~~~s~hK~~~~p-----~g~G~l~~~~~~~~~~ 319 (456)
T 2z67_A 245 RNSDDIVEIAKICENYDIPHIINGAYAIQNNYYLEKLKKAFKYRVDAVVSSSDKNLLTP-----IGGGLVYSTDAEFIKE 319 (456)
T ss_dssp BCCCCHHHHHHHHHHHTCCEEEECTTTTTCHHHHHHHHHHHTSCCSEEEEEHHHHHCCC-----SSCEEEEESCHHHHHH
T ss_pred CCcCCHHHHHHHHHHcCCcEEEECcchHHHHHhhHHHHHhhCCCCCEEEEcCCCCcCCC-----CCeEEEEEcCHHHHhh
Confidence 999999999999999999999962 11 2222211 11123 899999999 655444 457899995 667665
Q ss_pred CCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHh
Q 001989 383 MPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLK 462 (985)
Q Consensus 383 lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~ 462 (985)
+.+...|+ + + + ....+..+++ ..++.+|++++.++..+++++++++|+
T Consensus 320 l~~~~~g~----------------------~-----~-~--~~~~~~~aal--~~l~~~~~~~~~~~~~~~~~~l~~~L~ 367 (456)
T 2z67_A 320 ISLSYPGR----------------------A-----S-A--TPVVNTLVSL--LSMGSKNYLELVKNQKNSKKLLDELLN 367 (456)
T ss_dssp HHTTSCSC----------------------B-----C-S--HHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCcCCCCC----------------------C-----C-C--CHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 53222220 0 0 0 1122333333 566788999999999999999999999
Q ss_pred cC----CCeEEcCCCCcceEEEec--CC-HHHHHHHHHHcCce-eeee--------------cCCeEEEEeccCCCHHHH
Q 001989 463 KL----GTVEVQGLPFFDTVKVKC--AD-AHAIASAAYKIEMN-LRVV--------------DSNTVTASFDETTTLEDV 520 (985)
Q Consensus 463 ~~----g~~~~~~~~~~~~~~~~~--~~-~~~v~~~L~~~GI~-~~~~--------------~~~~lris~t~~~t~edI 520 (985)
++ | +.++.+. +.+.|.. ++ ..++.++|.++||. ++.. ..+.+|+|++.++|++||
T Consensus 368 ~~~~~~g-~~v~~~~--~~v~~~~~~~~~~~~l~~~L~~~gi~~~rv~~~~g~f~G~~~~~~~~~~vr~s~~~~~t~eei 444 (456)
T 2z67_A 368 DLSKKTG-GKFLDVE--SPIASCISVNSDPVEIAAKLYNLRVTGPRGIKKTDHFGNCYLGTYTHDYIVMNAAIGVRTEDI 444 (456)
T ss_dssp HHHHHSS-CCBCCCC--CSSEEEEECSSCHHHHHHHHHHTTEESCEEECTTCHHHHTCSSCCSCCEEEEECCTTCCHHHH
T ss_pred hcccccC-CEecCCC--CeEEEEEecccHHHHHHHHHHHcCCCcceEEeecCccccccccccCcchhhhhhhcCCCHHHH
Confidence 88 6 7666433 4444444 55 58899999999862 2221 247899999999999999
Q ss_pred HHHHHHHhC
Q 001989 521 DKLFIVFAG 529 (985)
Q Consensus 521 d~li~aL~~ 529 (985)
|+++++|++
T Consensus 445 d~~l~~L~~ 453 (456)
T 2z67_A 445 VNSVSKLEK 453 (456)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHH
Confidence 999999975
|
| >3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=3.7e-21 Score=229.30 Aligned_cols=360 Identities=13% Similarity=0.098 Sum_probs=246.7
Q ss_pred ccCCCCCCCCCCCCCHHHHHHHHHHHhcCCCc-c--ceecCCCCCCCC-CcHHHHHHHHhCCccccccCCChhhHhhhHH
Q 001989 135 RIDSMKFSKFDEGLTESQMIEHMQKLASMNKV-Y--KSFIGMGYYNTH-VPPVILRNIMENPAWYTQYTPYQAEIAQGRL 210 (985)
Q Consensus 135 ~~~~~~lp~~~~~~se~e~~~~~~~l~~~n~~-~--~~~lG~g~y~~~-~p~~v~~~i~~~~~~~t~~~pyq~e~sqg~l 210 (985)
......+| ..++++.+++++++++...+.. + ..|.|..+.... +++.+.+. +. .+...+++++..+++..
T Consensus 65 ~~~~~~lp--~~g~~~~~i~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~p~~~ 138 (514)
T 3mad_A 65 FPSHARLP--RAGLPRAEILAEIAAMGAAESPAWRDGYASGAVYHGDEHHIAFLNEV-YA---LQSQSNPLHPDLWPSTA 138 (514)
T ss_dssp SCCCSSCC--SSCCCHHHHHHHHHHHHHHHHHHHHTTCBSSSCSCCCHHHHHHHHHH-HH---HHTTCCTTCTTTCHHHH
T ss_pred cCccCCCC--CCCCCHHHHHHHHHHHHhccCCCCCCCceEEEecCCCCCHHHHHHHH-HH---HHhhcCCcccccChHHH
Confidence 33345677 6789999999999998755432 2 234554443221 23334322 22 12334566666677888
Q ss_pred HHHHHHHHHHHHhcCCCC--cce--eeccchHHHHHHHHHHhhhhc-----CCCCEEEEcCCCChhHHHHHHHhhcCCCe
Q 001989 211 ESLLNFQTMIADLTGLPM--SNA--SLLDEGTAAAEAMAMCNNIQK-----GKKKTFIIASNCHPQTIDICITRADGFDI 281 (985)
Q Consensus 211 ~~i~e~q~~ia~L~g~~~--~~~--sl~~~~ta~~ea~~~a~~~~~-----~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi 281 (985)
+...++++++++++|++. .++ .+++|+|.+++.++.+.+... .++|+|+++...|+++...++. .|+
T Consensus 139 ~le~~l~~~la~~~g~~~~~~~v~~~~t~ggt~a~~~al~a~~~~g~~~~g~~~d~Vi~~~~~~~~~~~~~~~----~G~ 214 (514)
T 3mad_A 139 KFEAEVVAMTAHMLGGDAAGGTVCGTVTSGGTESLLLAMKTYRDWARATKGITAPEAVVPVSAHAAFDKAAQY----FGI 214 (514)
T ss_dssp HHHHHHHHHHHHHTTGGGGTSCCEEEEESSHHHHHHHHHHHHHHHHHHHHCCSSCEEEEETTSCTHHHHHHHH----HTC
T ss_pred HHHHHHHHHHHHHcCCCCccCCcceEEcCcHHHHHHHHHHHHHHHhhhhcCCCCCeEEEeCccchHHHHHHHH----cCC
Confidence 888899999999999984 455 899999988888776543210 0238999999999999888764 377
Q ss_pred EEEEeCc--------hhhhc-cCCCEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCcc---------ccC--
Q 001989 282 KVVVSDL--------KDIDY-KSGDVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLA---------LTI-- 340 (985)
Q Consensus 282 ~v~~v~~--------~~l~~-l~~~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~---------lg~-- 340 (985)
+++.++. ++|++ +++++++|++++| |.+|.+.|+++|+++|+++|++++||. .++ .|.
T Consensus 215 ~v~~v~~~~~~~~d~~~Le~~i~~~~~~v~~~~~~nptG~~~~l~~i~~la~~~~i~livDe-a~~~~~~~~~~~~g~~~ 293 (514)
T 3mad_A 215 KLVRTPLDADYRADVAAMREAITPNTVVVAGSAPGYPHGVVDPIPEIAALAAEHGIGCHVDA-CLGGFILPWAERLGYPV 293 (514)
T ss_dssp EEEEECBCTTSCBCHHHHHHHCCTTEEEEEEETTCTTTCCCCCHHHHHHHHHHHTCEEEEEC-TTTTTTHHHHHHTTCCC
T ss_pred eeEEeeeCCCCCCCHHHHHHHhccCCEEEEEeCCCCCCccccCHHHHHHHHHHhCCeEEEec-ccccccchhHHhcCCCC
Confidence 8888764 45666 8889999999998 569999999999999999999999953 222 111
Q ss_pred -CCCCCcccceEEEecC-ccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCC
Q 001989 341 -LKPPGELGADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATS 418 (985)
Q Consensus 341 -l~~~~~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~ats 418 (985)
.......|+|++++++ |++ +||+++|+++++++........... +..+.. .... ...++.
T Consensus 294 ~~~~~~~~g~d~~~~s~~K~l-----~~~~~~g~~~~~~~~~~~~~~~~~~---~~~~~~--~~~~--------~~~gs~ 355 (514)
T 3mad_A 294 PPFDFRLEGVTSVSADTHKYG-----YGAKGTSVILYRRPDLLHYQYFIAA---DWPGGL--YFSP--------TFAGSR 355 (514)
T ss_dssp CCCSTTSTTCCEEEECTTTTT-----CCCSSCEEEEESSHHHHTTTCEEES---SCTTCS--EEES--------SSCSSC
T ss_pred CcccccCCCCcEEEECchhcc-----CCCCCeEEEEEeCHHHhcccccccc---ccCCCc--ccCC--------ccCCCC
Confidence 1123567999999998 554 3455688999988766554322110 100110 0000 011222
Q ss_pred CccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCCCcceEEEecCC--HHHHHHHHHHcC
Q 001989 419 NICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDTVKVKCAD--AHAIASAAYKIE 496 (985)
Q Consensus 419 ni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~--~~~v~~~L~~~G 496 (985)
+. ....++.++ +..++.+|++++.++..++++++++.|+++.+++++..+. ..+.+..++ ..++.++|.++|
T Consensus 356 ~~---~~~~a~~aa--l~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~-~~~~~~~~~~~~~~l~~~L~~~G 429 (514)
T 3mad_A 356 PG---ALSATAWAA--MLSLGEEGYLDATRRILQAADRLKAGVRAIPSLKILGDPL-WVIAVASDELNIYQVMEEMAGRG 429 (514)
T ss_dssp CH---HHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCEESSCCS-SEEEEECSSSCHHHHHHHHHTTT
T ss_pred ch---HHHHHHHHH--HHHHhHHHHHHHHHHHHHHHHHHHHHHhhCCCeEEeCCCe-EEEEEeCCCCCHHHHHHHHHhcC
Confidence 22 122233333 3667888999999999999999999999984488875442 245555544 889999999999
Q ss_pred ceeeee-cCCeEEEEeccC-CCHHHHHHHHHHHhC
Q 001989 497 MNLRVV-DSNTVTASFDET-TTLEDVDKLFIVFAG 529 (985)
Q Consensus 497 I~~~~~-~~~~lris~t~~-~t~edId~li~aL~~ 529 (985)
|.+... .++.+|++++.. ++++|||+++++|++
T Consensus 430 i~v~g~~~~~~~Ri~~~~~~~~~e~i~~~l~~L~~ 464 (514)
T 3mad_A 430 WRLNGLHRPPAFHVALTLRHTEPGVVDRFLADLQD 464 (514)
T ss_dssp CBCEEETTTTEEEEECCGGGGSTTHHHHHHHHHHH
T ss_pred CEeccCCCCCeEEEEEecCCCCHHHHHHHHHHHHH
Confidence 988544 367899999955 466999999999974
|
| >1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.89 E-value=1.6e-21 Score=225.03 Aligned_cols=319 Identities=13% Similarity=0.106 Sum_probs=213.7
Q ss_pred HHHHHHHHHHHHHHhCC-Ccc-ceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCccc----HHHHHHCCcEE
Q 001989 631 QEMFNNLGEWLCTITGF-DSF-SLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTN----PATAAMCGMKI 704 (985)
Q Consensus 631 ~~~~~e~~~~la~l~G~-~~~-~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~----~~~a~~~G~~v 704 (985)
.+...++++.+++++|. +.. .++.++|++|+..++.+++... ..++++|+++...|... ...++..|+++
T Consensus 71 ~~~~~~l~~~la~~~~~~~~~~v~~~~g~t~a~~~~~~~~~~~~----~~~gd~Vl~~~~~~~~~~~~~~~~~~~~g~~~ 146 (420)
T 1t3i_A 71 TDAYEAVRNKVAKFINARSPREIVYTRNATEAINLVAYSWGMNN----LKAGDEIITTVMEHHSNLVPWQMVAAKTGAVL 146 (420)
T ss_dssp HHHHHHHHHHHHHHTTCSCGGGEEEESSHHHHHHHHHHHTHHHH----CCTTCEEEEETTCCGGGTHHHHHHHHHHCCEE
T ss_pred HHHHHHHHHHHHHHcCCCCCCeEEEcCChHHHHHHHHHHhhhcc----cCCCCEEEECcchhHHHHHHHHHHHHhcCcEE
Confidence 35567899999999998 443 3556777887766666553110 13678999988877763 34456789999
Q ss_pred EEEcCCCCCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCccC
Q 001989 705 VSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIG 783 (985)
Q Consensus 705 v~v~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~g 783 (985)
+.+|+++++.+|+++|+++++ +++++|++++| |++|.+. |+++|.++|+++|+++|+|++|..+...+ ....++
T Consensus 147 ~~v~~~~~~~~d~~~l~~~l~---~~~~~v~~~~~~nptG~~~-~l~~i~~l~~~~~~~li~D~a~~~~~~~~-~~~~~~ 221 (420)
T 1t3i_A 147 KFVQLDEQESFDLEHFKTLLS---EKTKLVTVVHISNTLGCVN-PAEEIAQLAHQAGAKVLVDACQSAPHYPL-DVQLID 221 (420)
T ss_dssp EEECBCTTSSBCHHHHHHHCC---TTEEEEEEESBCTTTCBBC-CHHHHHHHHHHTTCEEEEECTTTTTTSCC-CHHHHT
T ss_pred EEeccCCCCCcCHHHHHHhhC---CCceEEEEeCCcccccCcC-CHHHHHHHHHHcCCEEEEEhhhccCCccC-chhhcC
Confidence 999998888999999999997 78999999998 4699998 89999999999999999999986432211 223467
Q ss_pred CcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCC-C-----CCCCC-CCCCCCCCCCcchhhhHHHHHH
Q 001989 784 ADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTG-G-----IPAPE-KSQPLGTIAAAPWGSALILPIS 856 (985)
Q Consensus 784 ~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~-~-----~~~~~-~~~~~~~i~s~~~g~~~~~~~a 856 (985)
.|++++|+||.+ |++|+|++++++++.+.+.....++.. + ...+. ..... ..+++.. ..+++.
T Consensus 222 ~di~~~s~sK~~------~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~a~ 291 (420)
T 1t3i_A 222 CDWLVASGHKMC------APTGIGFLYGKEEILEAMPPFFGGGEMIAEVFFDHFTTGELPHKF-EAGTPAI---AEAIAL 291 (420)
T ss_dssp CSEEEEEGGGTT------SCTTCEEEEECHHHHHHSCCCSCSTTSEEEECSSCEEECCTTGGG-CCSSCCH---HHHHHH
T ss_pred CCEEEEehhhhc------CCCceEEEEEchHHHhhcCceecCCCccccccccccCCCCchhhc-cCCCccH---HHHHHH
Confidence 999999999965 345689999998765544322111100 0 00000 00000 0111111 111111
Q ss_pred HHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhccCCeeecCCCC---ceeeEEEEEecCccccCCCCHHHHHHHHHHCCCc
Q 001989 857 YTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNG---TVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFH 933 (985)
Q Consensus 857 ~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~g~~l~~~~~~~---~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~ 933 (985)
.+.+..+...++.++.++..++++++.+.|++..++....+.. .....+.+.++ +.+..++.+.|.++||.
T Consensus 292 ~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~l~~~gi~ 365 (420)
T 1t3i_A 292 GAAVDYLTDLGMENIHNYEVELTHYLWQGLGQIPQLRLYGPNPKHGDRAALASFNVA------GLHASDVATMVDQDGIA 365 (420)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCTTEEEESCCGGGSCBCSEEEEEET------TBCHHHHHHHHHTTTEE
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhCCCeEEeCCCccccccCCEEEEEEC------CCCHHHHHHHHHHCCeE
Confidence 2245555555677777888899999999998732332222210 01122344554 34678899999999998
Q ss_pred cCCCC---------CCCCCEEEEeccCCCCHHHHHHHHccCChhHHHHhhcc
Q 001989 934 GPTMS---------WPVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRLKM 976 (985)
Q Consensus 934 ~~~~~---------~p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~~~ 976 (985)
+.... +...+.+||+++..++++|+++ +++.|+++++.++.
T Consensus 366 v~~~~~~~~~~~~~~g~~~~iRis~~~~~~~~~i~~--~~~~l~~~~~~~~~ 415 (420)
T 1t3i_A 366 IRSGHHCTQPLHRLFDASGSARASLYFYNTKEEIDL--FLQSLQATIRFFSD 415 (420)
T ss_dssp CBCSCTTCHHHHHHTTCCCCEEEECCTTCCHHHHHH--HHHHHHHHHHHTC-
T ss_pred EeeccccchHHHHhcCCCCeEEEecCCCCCHHHHHH--HHHHHHHHHHHhcC
Confidence 75431 1125789999999999999999 88999999887754
|
| >1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal phosphate, structural PSI, protein structure initiative; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB: 1i29_A* 1jf9_A* 1kmk_A* 1c0n_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=1.1e-21 Score=225.12 Aligned_cols=315 Identities=16% Similarity=0.131 Sum_probs=212.0
Q ss_pred HHHHHHHHHHHHHHHhCC-Ccc-ceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccH-H---HHHHCCcE
Q 001989 630 YQEMFNNLGEWLCTITGF-DSF-SLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNP-A---TAAMCGMK 703 (985)
Q Consensus 630 ~~~~~~e~~~~la~l~G~-~~~-~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~-~---~a~~~G~~ 703 (985)
..+...++++++++++|. +.. .++.++|++|+..++.+++.+. ..++++|++++..|.+.. . .++..|++
T Consensus 65 ~~~~~~~l~~~la~~~~~~~~~~v~~~~g~t~a~~~~~~~~~~~~----~~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~ 140 (406)
T 1kmj_A 65 ATEKMENVRKRASLFINARSAEELVFVRGTTEGINLVANSWGNSN----VRAGDNIIISQMEHHANIVPWQMLCARVGAE 140 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCSCGGGEEEESSHHHHHHHHHHHTHHHH----CCTTCEEEEETTCCGGGTHHHHHHHHHHTCE
T ss_pred HHHHHHHHHHHHHHHcCCCCCCeEEEeCChhHHHHHHHHHhhhhc----CCCCCEEEEecccchHHHHHHHHHHHhCCCE
Confidence 345677899999999998 443 3556777777766666553210 136789999887766542 2 25667999
Q ss_pred EEEEcCCCCCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCcc
Q 001989 704 IVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYI 782 (985)
Q Consensus 704 vv~v~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~ 782 (985)
++.+|.++++.+|+++|+++++ +++++|++++| |++|.+. |+++|.++|+++|+++++|++|..+...+ ....+
T Consensus 141 ~~~~~~~~~~~~d~~~l~~~l~---~~~~~v~~~~~~nptG~~~-~l~~i~~l~~~~~~~li~D~~~~~g~~~~-~~~~~ 215 (406)
T 1kmj_A 141 LRVIPLNPDGTLQLETLPTLFD---EKTRLLAITHVSNVLGTEN-PLAEMITLAHQHGAKVLVDGAQAVMHHPV-DVQAL 215 (406)
T ss_dssp EEEECBCTTSCBCGGGHHHHCC---TTEEEEEEESBCTTTCCBC-CHHHHHHHHHHTTCEEEEECTTTTTTSCC-CHHHH
T ss_pred EEEEecCCCCCcCHHHHHHHhc---cCCeEEEEeCCCccccCcC-CHHHHHHHHHHcCCEEEEEchhhcCCCCC-ccccc
Confidence 9999998888999999999997 78999999998 5799998 89999999999999999999986432211 12345
Q ss_pred CCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCC-CC--CC----CC-CCCCCCCCCCcchhhhHHHH
Q 001989 783 GADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTG-GI--PA----PE-KSQPLGTIAAAPWGSALILP 854 (985)
Q Consensus 783 g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~-~~--~~----~~-~~~~~~~i~s~~~g~~~~~~ 854 (985)
++|+++.|+||+| |++|+|++++++++.+.+.....+++. +. .. +. ..... ...++ ....++
T Consensus 216 ~~d~~~~s~~K~~------g~~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~~ 285 (406)
T 1kmj_A 216 DCDFYVFSGHKLY------GPTGIGILYVKEALLQEMPPWEGGGSMIATVSLSEGTTWTKAPWRF-EAGTP---NTGGII 285 (406)
T ss_dssp TCSEEEEEGGGTT------SCTTCEEEEECHHHHHHCCCSSCSTTSEEEEETTTEEEECCTTGGG-CCSSC---CHHHHH
T ss_pred CCCEEEEEchhcc------CCCCcEEEEEeHHHHhhcCCcccCCCceeecccccccccCCCchhc-cCCCC---CHHHHH
Confidence 7999999999987 345689999998766555332222110 00 00 00 00000 00111 111111
Q ss_pred HHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhccCCeeecCC--CCceeeEEEEEecCccccCCCCHHHHHHHHHHCCC
Q 001989 855 ISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGV--NGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGF 932 (985)
Q Consensus 855 ~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~g~~l~~~~~--~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi 932 (985)
+..+.+..+..+++.+..++..++++++.+.|++..++.+..+ .+. .+.+.++ +.+..++.+.|.++||
T Consensus 286 a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~---~~~~~~~------~~~~~~~~~~l~~~gi 356 (406)
T 1kmj_A 286 GLGAALEYVSALGLNNIAEYEQNLMHYALSQLESVPDLTLYGPQNRLG---VIAFNLG------KHHAYDVGSFLDNYGI 356 (406)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTSTTEEEESCTTCCS---EEEEEET------TCCHHHHHHHHHHTTE
T ss_pred HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCCcCC---EEEEEEC------CCCHHHHHHHHhhCCc
Confidence 1123455555556777777888899999999987323322222 222 2344443 4567889999999999
Q ss_pred ccCCCC---------CCCCCEEEEeccCCCCHHHHHHHHccCChhHHHHhh
Q 001989 933 HGPTMS---------WPVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRL 974 (985)
Q Consensus 933 ~~~~~~---------~p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~ 974 (985)
.+.... +..++.+||+++..+|++|+++ +++.|+++++.+
T Consensus 357 ~v~~g~~~~~~~~~~~g~~~~iRis~~~~~t~~~i~~--~~~~l~~~~~~l 405 (406)
T 1kmj_A 357 AVRTGHHCAMPLMAYYNVPAMCRASLAMYNTHEEVDR--LVTGLQRIHRLL 405 (406)
T ss_dssp ECEEECTTCHHHHHHTTCSCEEEEECCTTCCHHHHHH--HHHHHHHHHHHH
T ss_pred EEEeccccchHHHHhcCCCCeEEEEeecCCCHHHHHH--HHHHHHHHHHhh
Confidence 874311 1124899999999999999999 888898888765
|
| >2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=1.4e-21 Score=223.93 Aligned_cols=316 Identities=15% Similarity=0.123 Sum_probs=210.8
Q ss_pred HHHHHHHHHHHHHHhCCCcc--ceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHH--HHHHCCcEEEE
Q 001989 631 QEMFNNLGEWLCTITGFDSF--SLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPA--TAAMCGMKIVS 706 (985)
Q Consensus 631 ~~~~~e~~~~la~l~G~~~~--~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~--~a~~~G~~vv~ 706 (985)
.+...++++++++++|.+.. .++.++|++|+..++.++. .++++|++++..|..+.. .++..|++++.
T Consensus 51 ~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~--------~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~ 122 (393)
T 2huf_A 51 LKIMDDIKEGVRYLFQTNNIATFCLSASGHGGMEATLCNLL--------EDGDVILIGHTGHWGDRSADMATRYGADVRV 122 (393)
T ss_dssp HHHHHHHHHHHHHHHTCCCSEEEEESSCHHHHHHHHHHHHC--------CTTCEEEEEESSHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHHHHHhCCCCCcEEEEcCcHHHHHHHHHHHHh--------CCCCEEEEECCCcchHHHHHHHHHcCCeeEE
Confidence 35567899999999998763 3566778877765554431 367899998876654321 24568999999
Q ss_pred EcCCCCCCCCHHHHHHHHHhcCC-CEEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCccCC
Q 001989 707 VGTDAKGNINIEELRKAAEANRD-NLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIGA 784 (985)
Q Consensus 707 v~~d~~g~iD~e~L~~~i~~~~~-~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~g~ 784 (985)
+|+++++.+|+++|+++++ + ++++|++++| |++|.+. |+++|.++|+++|+++|+|++|..+...+ ....+++
T Consensus 123 v~~~~~~~~d~~~l~~~i~---~~~~~~v~~~~~~nptG~~~-~l~~i~~~~~~~~~~li~D~a~~~~~~~~-~~~~~~~ 197 (393)
T 2huf_A 123 VKSKVGQSLSLDEIRDALL---IHKPSVLFLTQGDSSTGVLQ-GLEGVGALCHQHNCLLIVDTVASLGGAPM-FMDRWEI 197 (393)
T ss_dssp EECCTTCCCCHHHHHHHHH---HHCCSEEEEESEETTTTEEC-CCTTHHHHHHHTTCEEEEECTTTBTTBCC-CTTTTTC
T ss_pred EeCCCCCCCCHHHHHHHHh---ccCCcEEEEEccCCCccccC-CHHHHHHHHHHcCCEEEEEcccccCCCCc-chhhcCc
Confidence 9998888999999999998 5 7889999998 5799998 89999999999999999999986433222 2345679
Q ss_pred cEEEeCCcccccccCCCCCCceEEEEEcccccCcCC-------CCcccc------CCCCCCCCCCCCCCCCCCcchhhhH
Q 001989 785 DVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLP-------SHPVVS------TGGIPAPEKSQPLGTIAAAPWGSAL 851 (985)
Q Consensus 785 Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp-------~~~~g~------~~~~~~~~~~~~~~~i~s~~~g~~~ 851 (985)
|++++|+||+|+ |++|.|++++++++.+.+. +..++. ....... + ...... +..
T Consensus 198 d~~~~s~sK~l~-----g~~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~-----~~~ 264 (393)
T 2huf_A 198 DAMYTGSQKVLG-----APPGITPVSFSHRAVERYKRRNTKVKVYYWDMSLVGDYWGCFGRP-R--IYHHTI-----SST 264 (393)
T ss_dssp SEEECCSSSTTC-----CCSSCEEEEECHHHHHHHHTCSSCCSCGGGCHHHHHHHTTCSSSC-C--CCSCCC-----CHH
T ss_pred cEEEECCCcccc-----cCCCeEEEEECHHHHHHHhhcCCCCceEEEchHHHHhhhcccccc-C--CCCCCC-----CHH
Confidence 999999999974 3457799999876544321 111110 0000000 0 000111 111
Q ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCC-ceeeEEEEEecCccccCCCCHHHHHHHHHH
Q 001989 852 ILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNG-TVAHEFIVDLRGLKNTAGIEPEDVAKRLMD 929 (985)
Q Consensus 852 ~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~-~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~ 929 (985)
...++.+.+..+..+++.+..++..++++++.+.|++ ++.+. .+.+ .....+.+.++ .+.+..++.++|.+
T Consensus 265 ~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~--~~~~~~~~~~~~~~~~-----~~~~~~~~~~~L~~ 337 (393)
T 2huf_A 265 LLYGLREAIAMACEEGLPALIARHEDCAKRLYRGLQDAGFELY--ADPKDRLSTVTTIKVP-----QGVDWLKAAQYAMK 337 (393)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCBS--SCGGGBCTTEEEEECC-----TTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCeec--cCccccCCcEEEEEcC-----CCCCHHHHHHHHHH
Confidence 2222233455554556777778888999999999987 44442 2111 01112345543 24578899999987
Q ss_pred C-CCccCCCCCC-CCCEEEEeccC-CCCHHHHHHHHccCChhHHHHhhccCCccc
Q 001989 930 Y-GFHGPTMSWP-VPGTLMIEPTE-SESKSWTGIVMLSSPSEKKLHRLKMGRQIS 981 (985)
Q Consensus 930 ~-Gi~~~~~~~p-~~~~lris~t~-~~t~eeId~~~~~~~l~~~~~~~~~~~~~~ 981 (985)
+ ||.+.....+ ..+.+||+++. .++++|+++ +++.|++++++++..-++.
T Consensus 338 ~~gi~v~~g~~~~~~~~~Ri~~~~~~~~~e~i~~--~~~~l~~~~~~~~~~~~~~ 390 (393)
T 2huf_A 338 TYLVEISGGLGPTAGQVFRIGLMGQNATTERVDR--VLQVFQEAVAAVKPDVQVK 390 (393)
T ss_dssp HHCEECBCCCGGGTTTEEEEECCGGGCSHHHHHH--HHHHHHHHHHHHCC-----
T ss_pred hCCEEEecCcccccCCEEEEEcccCcCCHHHHHH--HHHHHHHHHHHcCCCcccc
Confidence 5 9987643221 35799999944 568999999 8899999999887754443
|
| >3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.89 E-value=3.6e-21 Score=221.51 Aligned_cols=296 Identities=17% Similarity=0.149 Sum_probs=215.1
Q ss_pred hhHHHHHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEe
Q 001989 207 QGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVS 286 (985)
Q Consensus 207 qg~l~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v 286 (985)
++..+.+.++++.+|+++|.++.++.+++|+|++++.++.++....++||+|+++...|+++...+..+++..|++++.+
T Consensus 65 ~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~al~~~~~~l~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~v~~v 144 (406)
T 3cai_A 65 RRSAAVLDAAREAVADLVNADPGGVVLGADRAVLLSLLAEASSSRAGLGYEVIVSRLDDEANIAPWLRAAHRYGAKVKWA 144 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCGGGEEEESCHHHHHHHHHHHTGGGGBTTCEEEEETTSCGGGTHHHHHHHHHHBCEEEEE
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCeEEEeCChHHHHHHHHHHHhhccCCCCEEEEcCCccHHHHHHHHHHHHhcCCeEEEE
Confidence 34456788899999999999888899999999888877665520113789999999999999888876554458888887
Q ss_pred Cc---------hhhhc-cCCCEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCC-CCCcccceEEEe
Q 001989 287 DL---------KDIDY-KSGDVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILK-PPGELGADIVVG 354 (985)
Q Consensus 287 ~~---------~~l~~-l~~~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~-~~~~~GaDi~v~ 354 (985)
+. ++|++ +++++++|++.+| |.+|.+.|+++|.++|+++|+++++| ...+.|... +..++|+|++++
T Consensus 145 ~~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D-~a~~~g~~~~~~~~~~~d~~~~ 223 (406)
T 3cai_A 145 EVDIETGELPTWQWESLISKSTRLVAVNSASGTLGGVTDLRAMTKLVHDVGALVVVD-HSAAAPYRLLDIRETDADVVTV 223 (406)
T ss_dssp CCCTTTCCCCGGGHHHHCCTTEEEEEEESBCTTTCBBCCCHHHHHHHHHTTCEEEEE-CTTTTTTCCCCHHHHCCSEEEE
T ss_pred ecCcccCCcCHHHHHHHhCCCceEEEEeCCcCCccccCCHHHHHHHHHHcCCEEEEE-cccccCCCCCCchhcCCCEEEe
Confidence 64 34555 7889999999987 78999999999999999999999995 344555432 224578999999
Q ss_pred cCccccccCCCCCCcEE-EEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHH
Q 001989 355 SAQRFGVPMGYGGPHAA-FLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAM 433 (985)
Q Consensus 355 s~k~lg~P~~~GGP~~G-~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~ 433 (985)
|.+|+.+ |++| ++++++++.+++......+ |. .+..+.+.+|.|+ ....++.+++
T Consensus 224 s~~K~~g------~~~G~~~~~~~~~~~~l~~~~~~~-----~~----------~~~~~~~~~t~~~---~~~~a~~~al 279 (406)
T 3cai_A 224 NAHAWGG------PPIGAMVFRDPSVMNSFGSVSTNP-----YA----------TGPARLEIGVHQF---GLLAGVVASI 279 (406)
T ss_dssp EGGGGTS------CSCEEEEESCHHHHHTSCCCCSCT-----TC----------CGGGGGCCSCCCH---HHHHHHHHHH
T ss_pred ehhhhcC------CCcCeEEEEehHHHhhcCCcccCC-----CC----------CccccccCCCccH---HHHHHHHHHH
Confidence 9833422 3367 9999998887764321000 00 0112234566665 3333444444
Q ss_pred HHHHhCcc--------------hHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCC--CcceEEEecCC--HHHHHHHHHHc
Q 001989 434 YAVYHGPE--------------GLKTIAQRVHGLAGTFALGLKKLGTVEVQGLP--FFDTVKVKCAD--AHAIASAAYKI 495 (985)
Q Consensus 434 ~l~~~g~~--------------Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~--~~~~~~~~~~~--~~~v~~~L~~~ 495 (985)
.++... +++++.++..++++++.+.|+++.++++..+. ....+.+..++ ..++.+.|.++
T Consensus 280 --~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~ 357 (406)
T 3cai_A 280 --EYLAALDESARGSRRERLAVSMQSADAYLNRVFDYLMVSLRSLPLVMLIGRPEAQIPVVSFAVHKVPADRVVQRLADN 357 (406)
T ss_dssp --HHHHTSSTTCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTEEECCCCSSBCSEEEEEETTBCHHHHHHHHHHT
T ss_pred --HHHHHhccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCccccCCEEEEEECCcCHHHHHHHHHHC
Confidence 232222 47889999999999999999998448887432 23345666654 88899999999
Q ss_pred Cceeeeec-------------CCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 496 EMNLRVVD-------------SNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 496 GI~~~~~~-------------~~~lris~t~~~t~edId~li~aL~~ 529 (985)
||.++... .+.+|++++.++|++|+++++++|+.
T Consensus 358 gi~v~~g~~~~~~~~~g~~~~~~~iRis~~~~~t~e~i~~~~~~l~~ 404 (406)
T 3cai_A 358 GILAIANTGSRVLDVLGVNDVGGAVTVGLAHYSTMAEVDQLVRALAS 404 (406)
T ss_dssp TEECEECCSCHHHHHHTTTTTTCCEEEECCTTCCHHHHHHHHHHHHT
T ss_pred CcEEecCChHHHHHHcCCCCCCCeEEEEeecCCCHHHHHHHHHHHHH
Confidence 99876421 36899999999999999999999974
|
| >2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=1.1e-21 Score=224.62 Aligned_cols=317 Identities=11% Similarity=0.048 Sum_probs=211.2
Q ss_pred HHHHHHHHHHHHHHHhCCCcc-ceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccH--HHHHHCCcEEEE
Q 001989 630 YQEMFNNLGEWLCTITGFDSF-SLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNP--ATAAMCGMKIVS 706 (985)
Q Consensus 630 ~~~~~~e~~~~la~l~G~~~~-~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~--~~a~~~G~~vv~ 706 (985)
..+...++++++++++|.+.. .++.++|++|+..++.++. .++++|++++..|..+. ..++..|++++.
T Consensus 40 ~~~~~~~l~~~la~~~g~~~~~v~~t~g~t~a~~~~~~~~~--------~~gd~Vl~~~~~~~~~~~~~~~~~~g~~~~~ 111 (392)
T 2z9v_A 40 FQLLYEKVVDKAQKAMRLSNKPVILHGEPVLGLEAAAASLI--------SPDDVVLNLASGVYGKGFGYWAKRYSPHLLE 111 (392)
T ss_dssp HHHHHHHHHHHHHHHTTCSSCCEEESSCTHHHHHHHHHHHC--------CTTCCEEEEESSHHHHHHHHHHHHHCSCEEE
T ss_pred HHHHHHHHHHHHHHHhCCCCCEEEEeCCchHHHHHHHHHhc--------CCCCEEEEecCCcccHHHHHHHHHcCCceEE
Confidence 345677899999999998753 3555777777755544331 36788999887665443 223457999999
Q ss_pred EcCCCCCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCccCCc
Q 001989 707 VGTDAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIGAD 785 (985)
Q Consensus 707 v~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~g~D 785 (985)
+|+++++.+|+++|++++++. +++++|++++| |++|.+. |+++|.++|+++|+++++|++|..+...+ ....+++|
T Consensus 112 v~~~~~~~~d~~~l~~~l~~~-~~~~~v~~~~~~nptG~~~-~l~~i~~l~~~~~~~li~D~a~~~g~~~~-~~~~~~~d 188 (392)
T 2z9v_A 112 IEVPYNEAIDPQAVADMLKAH-PEITVVSVCHHDTPSGTIN-PIDAIGALVSAHGAYLIVDAVSSFGGMKT-HPEDCKAD 188 (392)
T ss_dssp EECCTTSCCCHHHHHHHHHHC-TTCCEEEEESEEGGGTEEC-CHHHHHHHHHHTTCEEEEECTTTBTTBSC-CGGGGTCS
T ss_pred eeCCCCCCCCHHHHHHHHhcC-CCCcEEEEeccCCCCceec-cHHHHHHHHHHcCCeEEEEcccccCCccc-ccccccce
Confidence 999888899999999999632 57889999998 4699998 89999999999999999999986432221 23346799
Q ss_pred EEEeCCcccccccCCCCCCceEEEEEcccccCcC------CC-CccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHH
Q 001989 786 VCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFL------PS-HPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYT 858 (985)
Q Consensus 786 i~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~l------p~-~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a 858 (985)
++++|+||+++ |++|+|++++++++.+.+ ++ ...+.......+ ..... ...+. +...+.++.+
T Consensus 189 ~~~~s~sK~~~-----~~~g~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~-~~~~~-~~~~~---~~~~~~a~~~ 258 (392)
T 2z9v_A 189 IYVTGPNKCLG-----APPGLTMMGVSERAWAKMKANPLAPRASMLSIVDWENAW-SRDKP-FPFTP---SVSEINGLDV 258 (392)
T ss_dssp EEEECSSSTTC-----CCSCCEEEEECHHHHHHHHTCTTSCCSSTTCSGGGTTTT-STTSC-CSSCC---CHHHHHHHHH
T ss_pred EEEecCccccc-----CCCceeEEEECHHHHHHhhhccCCCCceeccHHHHHhhh-cccCC-CCCCC---CHHHHHHHHH
Confidence 99999999874 446789999997764433 11 111100000000 00000 00110 1122222334
Q ss_pred HHHHhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCC-CceeeEEEEEecCccccCCCCHHHHHHHHHHC-CCccC
Q 001989 859 YIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVN-GTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDY-GFHGP 935 (985)
Q Consensus 859 ~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~-~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~-Gi~~~ 935 (985)
.+..+...|+.+..++..++++++.+.|++ ++.+..+ +. ....+.+.+.++ .+.+..++.++|.++ ||.+.
T Consensus 259 al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~-~~~~~~~~~~~~~~~-----~~~~~~~l~~~L~~~~gi~v~ 332 (392)
T 2z9v_A 259 ALDLYLNEGPEAVWARHALTAKAMRAGVTAMGLSVWAA-SDSIASPTTTAVRTP-----DGVDEKALRQAARARYGVVFS 332 (392)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCBSSS-SGGGBCTTEEEEECC-----TTCCHHHHHHHHHHHHCEECE
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHHHHcCCeeccC-CccccCCceEEEECC-----CCCCHHHHHHHHHhcCCEEEe
Confidence 555555556777788888999999999987 4443220 11 001222345553 245788999999997 99875
Q ss_pred CCC-CCCCCEEEEeccC-CCCHHHHHHHHccCChhHHHHhhc
Q 001989 936 TMS-WPVPGTLMIEPTE-SESKSWTGIVMLSSPSEKKLHRLK 975 (985)
Q Consensus 936 ~~~-~p~~~~lris~t~-~~t~eeId~~~~~~~l~~~~~~~~ 975 (985)
... +...+.+||++.. .+|++|+++ +++.|++++++++
T Consensus 333 ~g~~~~~~~~lRi~~~~~~~~~~~i~~--~~~~l~~~~~~~~ 372 (392)
T 2z9v_A 333 SGRGETLGKLTRIGHMGPTAQPIYAIA--ALTALGGAMNAAG 372 (392)
T ss_dssp ECCGGGTTTEEEEECCGGGCSHHHHHH--HHHHHHHHHHHTT
T ss_pred cCCCCCCCCeEEEeCcccccCHHHHHH--HHHHHHHHHHHcC
Confidence 432 1235899999654 899999999 8899999887764
|
| >1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.89 E-value=5.2e-21 Score=220.81 Aligned_cols=305 Identities=17% Similarity=0.110 Sum_probs=216.4
Q ss_pred HHHHHHHHHHHHHhcCC-CCcceeeccchHHHHHHHHHHhhhh-cCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeC
Q 001989 210 LESLLNFQTMIADLTGL-PMSNASLLDEGTAAAEAMAMCNNIQ-KGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSD 287 (985)
Q Consensus 210 l~~i~e~q~~ia~L~g~-~~~~~sl~~~~ta~~ea~~~a~~~~-~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~ 287 (985)
.+.+.++++.+|+++|. ++.++.+++|+|.+++.++.+++.. .++||+|+++...|++...++...++..|++++.++
T Consensus 71 ~~~~~~l~~~la~~~~~~~~~~v~~~~g~t~a~~~~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~ 150 (420)
T 1t3i_A 71 TDAYEAVRNKVAKFINARSPREIVYTRNATEAINLVAYSWGMNNLKAGDEIITTVMEHHSNLVPWQMVAAKTGAVLKFVQ 150 (420)
T ss_dssp HHHHHHHHHHHHHHTTCSCGGGEEEESSHHHHHHHHHHHTHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHHCCEEEEEC
T ss_pred HHHHHHHHHHHHHHcCCCCCCeEEEcCChHHHHHHHHHHhhhcccCCCCEEEECcchhHHHHHHHHHHHHhcCcEEEEec
Confidence 35667889999999999 6778999999999888887765200 137899999999999976655544445688888876
Q ss_pred c--------hhhhc-cCCCEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCC-CCCcccceEEEecC
Q 001989 288 L--------KDIDY-KSGDVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILK-PPGELGADIVVGSA 356 (985)
Q Consensus 288 ~--------~~l~~-l~~~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~-~~~~~GaDi~v~s~ 356 (985)
. ++|++ +++++++|++++| |.+|.+.|+++|.++||++|+++++| +.++.|... ...++|+|++++|.
T Consensus 151 ~~~~~~~d~~~l~~~l~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D-~a~~~~~~~~~~~~~~~di~~~s~ 229 (420)
T 1t3i_A 151 LDEQESFDLEHFKTLLSEKTKLVTVVHISNTLGCVNPAEEIAQLAHQAGAKVLVD-ACQSAPHYPLDVQLIDCDWLVASG 229 (420)
T ss_dssp BCTTSSBCHHHHHHHCCTTEEEEEEESBCTTTCBBCCHHHHHHHHHHTTCEEEEE-CTTTTTTSCCCHHHHTCSEEEEEG
T ss_pred cCCCCCcCHHHHHHhhCCCceEEEEeCCcccccCcCCHHHHHHHHHHcCCEEEEE-hhhccCCccCchhhcCCCEEEEeh
Confidence 4 45666 7889999999988 78999999999999999999999995 345555442 33467899999998
Q ss_pred ccccccCCCCCCcEEEEEEchhhHhcCCCceeeee-ecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHH
Q 001989 357 QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVS-IDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYA 435 (985)
Q Consensus 357 k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t-~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l 435 (985)
+|+. |++|+|++++++++.+.+.....++. .+..... ...+ .....+.+.+|+++ ....++.+++
T Consensus 230 sK~~-----~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~--~~~~~~~~~~~~~~---~~~~a~~~al-- 295 (420)
T 1t3i_A 230 HKMC-----APTGIGFLYGKEEILEAMPPFFGGGEMIAEVFFD--HFTT--GELPHKFEAGTPAI---AEAIALGAAV-- 295 (420)
T ss_dssp GGTT-----SCTTCEEEEECHHHHHHSCCCSCSTTSEEEECSS--CEEE--CCTTGGGCCSSCCH---HHHHHHHHHH--
T ss_pred hhhc-----CCCceEEEEEchHHHhhcCceecCCCcccccccc--ccCC--CCchhhccCCCccH---HHHHHHHHHH--
Confidence 4353 33458999999998887754433321 0000000 0001 11122233455554 2233333333
Q ss_pred HHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCC-----CcceEEEecCC--HHHHHHHHHHcCceeeee------
Q 001989 436 VYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLP-----FFDTVKVKCAD--AHAIASAAYKIEMNLRVV------ 502 (985)
Q Consensus 436 ~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~-----~~~~~~~~~~~--~~~v~~~L~~~GI~~~~~------ 502 (985)
.++...|++++.++..++++++.+.|+++.++++..+. ...-+.+.+++ ..++.+.|.++||.+...
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~ 375 (420)
T 1t3i_A 296 DYLTDLGMENIHNYEVELTHYLWQGLGQIPQLRLYGPNPKHGDRAALASFNVAGLHASDVATMVDQDGIAIRSGHHCTQP 375 (420)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHHHHHHTCTTEEEESCCGGGSCBCSEEEEEETTBCHHHHHHHHHTTTEECBCSCTTCHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHhCCCeEEeCCCccccccCCEEEEEECCCCHHHHHHHHHHCCeEEeeccccchH
Confidence 44444578899999999999999999998338887432 23345555554 788999999999987543
Q ss_pred -----c-CCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 503 -----D-SNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 503 -----~-~~~lris~t~~~t~edId~li~aL~~ 529 (985)
. ++.+|++++.++|++|+++++++|..
T Consensus 376 ~~~~~g~~~~iRis~~~~~~~~~i~~~~~~l~~ 408 (420)
T 1t3i_A 376 LHRLFDASGSARASLYFYNTKEEIDLFLQSLQA 408 (420)
T ss_dssp HHHHTTCCCCEEEECCTTCCHHHHHHHHHHHHH
T ss_pred HHHhcCCCCeEEEecCCCCCHHHHHHHHHHHHH
Confidence 1 57899999999999999999999974
|
| >2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; HET: PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=6.6e-22 Score=222.40 Aligned_cols=308 Identities=12% Similarity=0.143 Sum_probs=205.5
Q ss_pred HHHHHHHHHHHHHHHhCCC--cc-ceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCccc--HHHHHHCCcEE
Q 001989 630 YQEMFNNLGEWLCTITGFD--SF-SLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTN--PATAAMCGMKI 704 (985)
Q Consensus 630 ~~~~~~e~~~~la~l~G~~--~~-~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~--~~~a~~~G~~v 704 (985)
..+...++++++++++|.+ .. .++.++|++|+..++ +.+ .+ ++|++++..|..+ ...++..|+++
T Consensus 31 ~~~~~~~l~~~la~~~g~~~~~~~v~~t~g~t~a~~~~~---~~~------~~-d~vl~~~~~~~~~~~~~~~~~~g~~~ 100 (353)
T 2yrr_A 31 VLRVNRAIQERLAALFDPGEGALVAALAGSGSLGMEAGL---ANL------DR-GPVLVLVNGAFSQRVAEMAALHGLDP 100 (353)
T ss_dssp HHHHHHHHHHHHHHHHCCCTTCEEEEESSCHHHHHHHHH---HTC------SC-CCEEEEECSHHHHHHHHHHHHTTCCE
T ss_pred HHHHHHHHHHHHHHHhCCCCCCceEEEcCCcHHHHHHHH---HHh------cC-CcEEEEcCCCchHHHHHHHHHcCCce
Confidence 3456778999999999985 33 355566777664333 321 12 6788877655543 23356789999
Q ss_pred EEEcCCCCCCCCHHHHHHHHHhcCC-CEEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCcc
Q 001989 705 VSVGTDAKGNINIEELRKAAEANRD-NLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYI 782 (985)
Q Consensus 705 v~v~~d~~g~iD~e~L~~~i~~~~~-~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~ 782 (985)
+.+|+++++.+|+++|+++++ + ++++|++++| |++|.+. |+++|.++|+++|+++|+|++|..+...+ ....+
T Consensus 101 ~~v~~~~~~~~d~~~l~~~l~---~~~~~~v~~~~~~nptG~~~-~~~~i~~l~~~~~~~li~D~a~~~~~~~~-~~~~~ 175 (353)
T 2yrr_A 101 EVLDFPPGEPVDPEAVARALK---RRRYRMVALVHGETSTGVLN-PAEAIGALAKEAGALFFLDAVTTLGMLPF-SMRAM 175 (353)
T ss_dssp EEEECCTTSCCCHHHHHHHHH---HSCCSEEEEESEETTTTEEC-CHHHHHHHHHHHTCEEEEECTTTTTTSCC-CHHHH
T ss_pred EEEeCCCCCCCCHHHHHHHHH---hCCCCEEEEEccCCCcceec-CHHHHHHHHHHcCCeEEEEcCcccccccc-ccccc
Confidence 999998888999999999998 4 7888999998 5799998 89999999999999999999985322111 22345
Q ss_pred CCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCC---CccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHH
Q 001989 783 GADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPS---HPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTY 859 (985)
Q Consensus 783 g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~---~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~ 859 (985)
++|++++++||+++ |++|+|++++++++.+.+.. ..+...............++. +.....++.+.
T Consensus 176 ~~d~~~~s~~K~~~-----~~~g~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~a~~~a 244 (353)
T 2yrr_A 176 GVDYAFTGSQKCLS-----APPGLAPIAASLEARKAFTGKRGWYLDLARVAEHWERGGYHHTT------PVLLHYALLEA 244 (353)
T ss_dssp TCSEEECCTTSTTC-----CCSSCEEEEECHHHHHHCCCCSCSTTCHHHHHHHHTTCCCSSCC------CHHHHHHHHHH
T ss_pred CceEEEecCccccc-----CCCceEEEEECHHHHHHhccCCCccccHHHHhhhhhcCCCCCCC------CHHHHHHHHHH
Confidence 78999999999874 34678999999876654431 100000000000000001111 11222233355
Q ss_pred HHHhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCC
Q 001989 860 IAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMS 938 (985)
Q Consensus 860 l~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~ 938 (985)
+..+..+|+.+..++..++++++.+.|++ ++++. ++.......+.+.++ .+.+..++.++|.++||.+....
T Consensus 245 l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~--~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~~~gi~v~~g~ 317 (353)
T 2yrr_A 245 LDLVLEEGVAARERRAREVYAWVLEELKARGFRPY--PKASPLPTVLVVRPP-----EGVDADRLVRALYAEGVAVAGGI 317 (353)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCEES--CSSSBCTTEEEEECC-----TTCCHHHHHHHHHHTTEECEECC
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHCCCccc--cCccCCCeEEEEECC-----CCCCHHHHHHHHHHCCEEEeCCc
Confidence 56665666778888889999999999987 44332 221101112335553 24678899999999999875432
Q ss_pred -CCCCCEEEEeccCCCCHHHHH-HHHccCChhHHHH
Q 001989 939 -WPVPGTLMIEPTESESKSWTG-IVMLSSPSEKKLH 972 (985)
Q Consensus 939 -~p~~~~lris~t~~~t~eeId-~~~~~~~l~~~~~ 972 (985)
+..++.+|++++..++++|++ + +++.|++++.
T Consensus 318 ~~~~~~~iRi~~~~~~~~~~~~~~--~~~~l~~~l~ 351 (353)
T 2yrr_A 318 GPTRGQVLRLGLMGEGARREAYQA--FLKALDRALA 351 (353)
T ss_dssp GGGTTTCEEEECSGGGSCHHHHHH--HHHHHHHHHH
T ss_pred cccCCCeEEEecCccCCHHHHHHH--HHHHHHHHHh
Confidence 212478999999889999999 8 7788887764
|
| >3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for structural genomics, JCSG; HET: MSE LLP; 1.70A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=99.89 E-value=5.5e-22 Score=225.78 Aligned_cols=310 Identities=10% Similarity=0.028 Sum_probs=206.9
Q ss_pred hHHHHHHHHHHHHHHHhCCCc--cc-eecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCC-CCcccH--HHHHHCCc
Q 001989 629 GYQEMFNNLGEWLCTITGFDS--FS-LQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVS-AHGTNP--ATAAMCGM 702 (985)
Q Consensus 629 G~~~~~~e~~~~la~l~G~~~--~~-~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~-~Hg~~~--~~a~~~G~ 702 (985)
+..+..+++++++++++|.+. .. +++++|++|+..++.++. .++++||++.. .|+ +. ..+...|+
T Consensus 49 ~~~~~~~~~~~~la~~~g~~~~~~~i~~~~ggt~al~~~~~~~~--------~~gd~vi~~~~~~~~-~~~~~~~~~~g~ 119 (376)
T 3f0h_A 49 EFSSTMLENEKFMLEYAKAPEGSKAVFMTCSSTGSMEAVVMNCF--------TKKDKVLVIDGGSFG-HRFVQLCEIHEI 119 (376)
T ss_dssp HHHHHHHHHHHHHHHHHTCCTTCEEEEESSCHHHHHHHHHHHHC--------CTTCCEEEEESSHHH-HHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHhCCCCCceEEEEcCChhHHHHHHHHhcc--------CCCCeEEEEeCChhh-HHHHHHHHHcCC
Confidence 445677899999999999874 23 446777887755544432 36788888754 333 22 23567899
Q ss_pred EEEEEcCCCCCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCc
Q 001989 703 KIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGY 781 (985)
Q Consensus 703 ~vv~v~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~ 781 (985)
+++.++.+.++.+|+++|+++++ +++++|++++| |++|.+. |+++|+++|+++|+++++|+++..+... .....
T Consensus 120 ~~~~v~~~~~~~~d~~~l~~~~~---~~~~~v~~~~~~nptG~~~-~l~~i~~l~~~~~~~li~D~~~~~~~~~-~~~~~ 194 (376)
T 3f0h_A 120 PYVALKLEHGKKLTKEKLYEYDN---QNFTGLLVNVDETSTAVLY-DTMMIGEFCKKNNMFFVCDCVSAFLADP-FNMNE 194 (376)
T ss_dssp CEEEEECCTTCCCCHHHHHTTTT---SCCCEEEEESEETTTTEEC-CHHHHHHHHHHTTCEEEEECTTTTTTSC-CCHHH
T ss_pred ceEEEeCCCCCCCCHHHHHHhhc---cCceEEEEecccCCcceec-CHHHHHHHHHHcCCEEEEEcCccccCcc-ccccc
Confidence 99999998888999999999876 78999999987 6799998 8999999999999999999988532111 12234
Q ss_pred cCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCC-ccccCCCCC---CCCCCCCCCCCCCcchhhhHHHHHHH
Q 001989 782 IGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSH-PVVSTGGIP---APEKSQPLGTIAAAPWGSALILPISY 857 (985)
Q Consensus 782 ~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~-~~g~~~~~~---~~~~~~~~~~i~s~~~g~~~~~~~a~ 857 (985)
+++|++++++||+|+ |++|+|++++++++.+.+... ..+...+.. .......+.... ....+.++.
T Consensus 195 ~~~d~~~~s~~K~l~-----~~~G~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~a~~ 264 (376)
T 3f0h_A 195 CGADVMITGSQKVLA-----CPPGISVIVLAPRGVERVEKSKVRTMYFDLKDALKNQERGQTPFTP-----AVGILLQIN 264 (376)
T ss_dssp HTCSEEEEETTTTTC-----CCSSCEEEEECHHHHHHHHTCCCCCSTTCHHHHHHHHTTTCCSSCC-----CHHHHHHHH
T ss_pred cCccEEEecCccccc-----CCCceEEEEECHHHHHHhhcCCCCceeecHHHHHhhcccCCCCCCC-----cHHHHHHHH
Confidence 679999999999984 356889999988765433210 000000000 000000111111 111122334
Q ss_pred HHHHHhcHH-HHHHHHHHHHHHHHHHHHHhhccCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHC-CCccC
Q 001989 858 TYIAMMGSK-GLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDY-GFHGP 935 (985)
Q Consensus 858 a~l~~lg~e-Gl~~~~~~~~~~a~~l~~~L~~g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~-Gi~~~ 935 (985)
+.+..+..+ ++.+..++..++++++.+.|++ .++....+. .....+.+... +.+..++.++|.++ ||.+.
T Consensus 265 ~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~~~~~~~~-~~~~~~~~~~~------~~~~~~l~~~l~~~~gi~v~ 336 (376)
T 3f0h_A 265 ERLKEIKKHGGADAEVARIASQAADFRAKIKD-LPFELVSES-PANGVTSVHPT------TANAYDIFLKLKDEYGIWIC 336 (376)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTT-SSEEECCSS-BBTTEEEEEES------SSCHHHHHHHHHHHSSEECE
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH-cCCccCccc-cCceEEEEeCC------CCCHHHHHHHHHHhCCEEEe
Confidence 455555555 6788888888999999999986 222221211 11112333322 56788999999998 99875
Q ss_pred CCC-CCCCCEEEEeccCCCCHHHHHHHHccCChhHHHH
Q 001989 936 TMS-WPVPGTLMIEPTESESKSWTGIVMLSSPSEKKLH 972 (985)
Q Consensus 936 ~~~-~p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~ 972 (985)
... ....+.+|++++..+|++|+++ +++.|+++++
T Consensus 337 ~g~~~~~~~~lRis~~~~~t~e~i~~--~~~~l~~~l~ 372 (376)
T 3f0h_A 337 PNGGEMKDTIFRVGHIGALTHEDNTT--LVNAFKDLQK 372 (376)
T ss_dssp ECCGGGTTTCEEEECCSSCCHHHHHH--HHHHHHHHHH
T ss_pred cCccccCCCEEEEecCCCCCHHHHHH--HHHHHHHHHH
Confidence 322 1124789999999999999999 7788888775
|
| >3e9k_A Kynureninase; kynurenine-L-hydrolase, kynurenine hydrolase, pyridoxal-5'-phosphate, inhibitor complex, 3-hydroxy hippur hydroxyhippuric acid, PLP; HET: PLP 3XH; 1.70A {Homo sapiens} PDB: 2hzp_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=5.7e-22 Score=233.16 Aligned_cols=311 Identities=14% Similarity=0.089 Sum_probs=208.4
Q ss_pred HHHHHHHHHHHHHhCCCccce-ecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHH----HHHHCCcEE--
Q 001989 632 EMFNNLGEWLCTITGFDSFSL-QPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPA----TAAMCGMKI-- 704 (985)
Q Consensus 632 ~~~~e~~~~la~l~G~~~~~~-~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~----~a~~~G~~v-- 704 (985)
+..+++++++++++|.+...+ +.+++++++..+ ++.+. ..+ .++++||++...|+++.. .++..|+++
T Consensus 111 ~~~~~l~~~la~~~g~~~~~v~~t~g~t~al~~~---~~~~~-~~~-~~~~~Vl~~~~~~~s~~~~~~~~~~~~G~~~~~ 185 (465)
T 3e9k_A 111 TGDESIVGLMKDIVGANEKEIALMNALTVNLHLL---MLSFF-KPT-PKRYKILLEAKAFPSDHYAIESQLQLHGLNIEE 185 (465)
T ss_dssp GTTHHHHGGGHHHHTCCGGGEEECSCHHHHHHHH---HHHHC-CCC-SSSCEEEEETTCCHHHHHHHHHHHHHTTCCHHH
T ss_pred HhHHHHHHHHHHHcCCCcCCEEEECCHHHHHHHH---HHHhc-ccc-CCCCEEEEcCCcCCchHHHHHHHHHHcCCccee
Confidence 344578899999999987554 445555555333 33321 122 356789999887765433 355678764
Q ss_pred ---EEEcCCCCCCCCHHHHHHHHHhcCCCEEEEEEEcCC-CccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCC
Q 001989 705 ---VSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPS-THGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPG 780 (985)
Q Consensus 705 ---v~v~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~pn-~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg 780 (985)
..+|.+.++.+|+++|+++|+++.+++++|++++|+ ++|.+. |+++|.++||++|+++++|++|..+...+ ...
T Consensus 186 ~~v~~~~~~~~~~~d~~~l~~~i~~~~~~~~lv~~~~~~n~tG~~~-~l~~i~~la~~~g~~vi~D~a~~~g~~~~-~~~ 263 (465)
T 3e9k_A 186 SMRMIKPREGEETLRIEDILEVIEKEGDSIAVILFSGVHFYTGQHF-NIPAITKAGQAKGCYVGFDLAHAVGNVEL-YLH 263 (465)
T ss_dssp HEEEECCCTTCSSCCHHHHHHHHHHHGGGEEEEEEESBCTTTCBBC-CHHHHHHHHHHTTCEEEEECTTTTTTSCC-CHH
T ss_pred eeEEEecCCCCCccCHHHHHHHHHhcCCCeEEEEEeCcccCcceee-cHHHHHHHHHHcCCEEEEEhhhhcCCcCC-chh
Confidence 445666778999999999997544689999999985 699998 89999999999999999999986443222 223
Q ss_pred ccCCcEEEeCCcccccccCCCCCC-ceEEEEEcccccCcCCCCccccCCCC----------CCC-----CCCCCCCCCCC
Q 001989 781 YIGADVCHLNLHKTFCIPHGGGGP-GMGPIGVKKHLAPFLPSHPVVSTGGI----------PAP-----EKSQPLGTIAA 844 (985)
Q Consensus 781 ~~g~Di~~~s~hK~l~~p~g~GGP-g~G~i~~~~~l~~~lp~~~~g~~~~~----------~~~-----~~~~~~~~i~s 844 (985)
++++|++++++||+|+ ||| |+|++++++++.+.+.....|+.+.. ..+ +.+.++.
T Consensus 264 ~~~~D~~~~s~~K~l~-----~gp~~~g~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~---- 334 (465)
T 3e9k_A 264 DWGVDFACWCSYKYLN-----AGAGGIAGAFIHEKHAHTIKPALVGWFGHELSTRFKMDNKLQLIPGVCGFRISNP---- 334 (465)
T ss_dssp HHTCCEEEECSSSTTC-----CCTTCCCEEEECGGGTTTSCCSSCCGGGBCHHHHTTCCSCCCBCSSGGGGCCSCC----
T ss_pred hcCCCEEEECcccccc-----cCCCceEEEEEcHHHHhhcCCcccCccCCCCCcccccCCCcCcCCChHHhccCCc----
Confidence 6789999999999984 456 47999999887665544333321110 000 0011111
Q ss_pred cchhhhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhcc----------CCeeecCCCCc--eeeEEEEEecCc
Q 001989 845 APWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKH----------YPILFRGVNGT--VAHEFIVDLRGL 912 (985)
Q Consensus 845 ~~~g~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~g----------~~l~~~~~~~~--~~~~~iv~~~~~ 912 (985)
+...+.+..+.+..+...|+.++.++..++++++.+.|++. .++....+..+ ....+.+.++
T Consensus 335 ----~~~~~~a~~aal~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~p~~~~~~g~~~~~~~~-- 408 (465)
T 3e9k_A 335 ----PILLVCSLHASLEIFKQATMKALRKKSVLLTGYLEYLIKHNYGKDKAATKKPVVNIITPSHVEERGCQLTITFS-- 408 (465)
T ss_dssp ----CHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCC---------CEEECSCSSGGGBCSCEEEEEC--
T ss_pred ----cHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCeEEeCCCCHhhcccEEEEEec--
Confidence 11223334455666666677888888899999999999763 23322222110 1112344443
Q ss_pred cccCCCCHHHHHHHHHHCCCccCCCCCCCCCEEEEec-cCCCCHHHHHHHHccCChhHHHHhh
Q 001989 913 KNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEP-TESESKSWTGIVMLSSPSEKKLHRL 974 (985)
Q Consensus 913 ~~~~g~~~~~v~~~L~~~Gi~~~~~~~p~~~~lris~-t~~~t~eeId~~~~~~~l~~~~~~~ 974 (985)
.+..++.++|.++||.+.. ..++++|+++ +.++|++||++ +++.|++++++.
T Consensus 409 -----~~~~~l~~~L~~~Gi~v~~---~~~~~iRis~~~~~~t~edi~~--~~~~l~~~l~~~ 461 (465)
T 3e9k_A 409 -----VPNKDVFQELEKRGVVCDK---RNPNGIRVAPVPLYNSFHDVYK--FTNLLTSILDSA 461 (465)
T ss_dssp -----CTTCCHHHHHHTTTEECEE---ETTTEEEEBCCTTTCCHHHHHH--HHHHHHHHHTC-
T ss_pred -----CCHHHHHHHHHHCCEEEec---CCCCEEEEeCcccCCCHHHHHH--HHHHHHHHHHhc
Confidence 2356789999999998752 2248999999 79999999999 788888887643
|
| >2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=1.7e-21 Score=223.45 Aligned_cols=313 Identities=13% Similarity=0.071 Sum_probs=212.5
Q ss_pred HHHHHHHHHHHHHhCCCcc-c-eecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccH--HHHHHCCcEEEEE
Q 001989 632 EMFNNLGEWLCTITGFDSF-S-LQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNP--ATAAMCGMKIVSV 707 (985)
Q Consensus 632 ~~~~e~~~~la~l~G~~~~-~-~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~--~~a~~~G~~vv~v 707 (985)
....++++.+++++|.+.. . ++.++|++++..++.++. .++++|++++..|..+. ..++..|++++.+
T Consensus 51 ~~~~~l~~~la~~~~~~~~~~v~~~~g~t~al~~~~~~~~--------~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v 122 (396)
T 2ch1_A 51 RTMDEVKDGLRYIFQTENRATMCVSGSAHAGMEAMLSNLL--------EEGDRVLIAVNGIWAERAVEMSERYGADVRTI 122 (396)
T ss_dssp HHHHHHHHHHHHHHTCCCSCEEEESSCHHHHHHHHHHHHC--------CTTCEEEEEESSHHHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHHHHHhCCCCCcEEEECCcHHHHHHHHHHHhc--------CCCCeEEEEcCCcccHHHHHHHHHcCCceEEe
Confidence 3467899999999999865 3 455777777755544431 36789999888776664 2567889999999
Q ss_pred cCCCCCCCCHHHHHHHHHhcCC-CEEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCccCCc
Q 001989 708 GTDAKGNINIEELRKAAEANRD-NLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIGAD 785 (985)
Q Consensus 708 ~~d~~g~iD~e~L~~~i~~~~~-~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~g~D 785 (985)
|.++++.+|+++|+++++ + ++++|++++| |++|.+. |+++|.++|+++|+++++|+++..+...+ ....+++|
T Consensus 123 ~~~~~~~~d~~~l~~~l~---~~~~~~v~~~~~~nptG~~~-~~~~i~~l~~~~~~~li~Dea~~~g~~~~-~~~~~~~d 197 (396)
T 2ch1_A 123 EGPPDRPFSLETLARAIE---LHQPKCLFLTHGDSSSGLLQ-PLEGVGQICHQHDCLLIVDAVASLCGVPF-YMDKWEID 197 (396)
T ss_dssp ECCTTSCCCHHHHHHHHH---HHCCSEEEEESEETTTTEEC-CCTTHHHHHHHTTCEEEEECTTTBTTBCC-CTTTTTCC
T ss_pred cCCCCCCCCHHHHHHHHH---hCCCCEEEEECCCCCCceec-CHHHHHHHHHHcCCEEEEEccccccCCcc-chhhcCcC
Confidence 998888999999999998 4 6889999998 6799998 79999999999999999999986432221 23456789
Q ss_pred EEEeCCcccccccCCCCCCceEEEEEcccccCcCC-------CCccccCCCCCCCCC---CCCCCCCCCcchhhhHHHHH
Q 001989 786 VCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLP-------SHPVVSTGGIPAPEK---SQPLGTIAAAPWGSALILPI 855 (985)
Q Consensus 786 i~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp-------~~~~g~~~~~~~~~~---~~~~~~i~s~~~g~~~~~~~ 855 (985)
+++.|+||+++ +++|+|++++++++...+. +..++.+.....+.. ....... . +.....+
T Consensus 198 ~~~~s~~K~~~-----~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~----~~~~~~a 267 (396)
T 2ch1_A 198 AVYTGAQKVLG-----APPGITPISISPKALDVIRNRRTKSKVFYWDLLLLGNYWGCYDEPKRYHHT-V----ASNLIFA 267 (396)
T ss_dssp EEECCCC-CCC-----CCSSCEEEEECHHHHHHHHTCSSCCSCGGGCHHHHHHHTTCSSSCCCCCCC-C----CHHHHHH
T ss_pred EEEEcCCcccc-----CCCCeEEEEECHHHHHhhhhccCcccceEechHHHHHhhhhhcccCCCCCC-C----cHHHHHH
Confidence 99999999984 3467899999876543321 101110000000000 0000000 1 1122233
Q ss_pred HHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCc-ee-eEEEEEecCccccCCCCHHHHHHHHHHC-C
Q 001989 856 SYTYIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGT-VA-HEFIVDLRGLKNTAGIEPEDVAKRLMDY-G 931 (985)
Q Consensus 856 a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~-~~-~~~iv~~~~~~~~~g~~~~~v~~~L~~~-G 931 (985)
+.+.+..+..+++.+..++..++++++.+.|++ ++.+. .+.+. .. ..+.+.++ .+.+..++.++|.++ |
T Consensus 268 ~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~--~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~L~~~~g 340 (396)
T 2ch1_A 268 LREALAQIAEEGLENQIKRRIECAQILYEGLGKMGLDIF--VKDPRHRLPTVTGIMIP-----KGVDWWKVSQYAMNNFS 340 (396)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTCCBS--SCSGGGBCTTEEEEECC-----TTCCHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHCCCeec--cCCccccCCceEEEEcC-----CCCCHHHHHHHHHHhCC
Confidence 345566655567778888888999999999987 55542 22111 11 12345543 256788999999875 9
Q ss_pred CccCCCCCC-CCCEEEEec-cCCCCHHHHHHHHccCChhHHHHhhcc
Q 001989 932 FHGPTMSWP-VPGTLMIEP-TESESKSWTGIVMLSSPSEKKLHRLKM 976 (985)
Q Consensus 932 i~~~~~~~p-~~~~lris~-t~~~t~eeId~~~~~~~l~~~~~~~~~ 976 (985)
|.+.....+ .++.+||++ ....+++|+++ +++.|++++++++.
T Consensus 341 i~v~~g~~~~~~~~iRi~~~~~~~~~e~i~~--~~~~l~~~l~~~~~ 385 (396)
T 2ch1_A 341 LEVQGGLGPTFGKAWRVGIMGECSTVQKIQF--YLYGFKESLKATHP 385 (396)
T ss_dssp BCCBCCCGGGTTTEEEEECCGGGCSHHHHHH--HHHHHHHHHHHHCT
T ss_pred EEEecCccccCCCEEEEECCCCcCCHHHHHH--HHHHHHHHHHHhCc
Confidence 987643211 357999999 45679999999 88999999887653
|
| >1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent aminotransferase fold; HET: PLP; 2.20A {Salmonella typhimurium} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.88 E-value=2.3e-21 Score=219.14 Aligned_cols=315 Identities=11% Similarity=0.081 Sum_probs=206.9
Q ss_pred HHHHHHHHHHHHhCCCc---cceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEc-CCCCcc-cHHHHHHCCcEEEEE
Q 001989 633 MFNNLGEWLCTITGFDS---FSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIP-VSAHGT-NPATAAMCGMKIVSV 707 (985)
Q Consensus 633 ~~~e~~~~la~l~G~~~---~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~-~~~Hg~-~~~~a~~~G~~vv~v 707 (985)
...++++++++++|.+. ..++.++|++|+..++.++. .++++||+. ..+|+. +...+...|++++.+
T Consensus 38 ~~~~l~~~la~~~g~~~~~~~v~~~~g~t~a~~~~~~~~~--------~~gd~vi~~~~~~~~~~~~~~~~~~g~~~~~v 109 (366)
T 1m32_A 38 VVEQIRQQLTALATASEGYTSVLLQGSGSYAVEAVLGSAL--------GPQDKVLIVSNGAYGARMVEMAGLMGIAHHAY 109 (366)
T ss_dssp THHHHHHHHHHHHCSSSSEEEEEEESCHHHHHHHHHHHSC--------CTTCCEEEEESSHHHHHHHHHHHHHTCCEEEE
T ss_pred HHHHHHHHHHHHhCCCCcCcEEEEecChHHHHHHHHHHhc--------CCCCeEEEEeCCCccHHHHHHHHHhCCceEEE
Confidence 45688899999999432 24566778877755544432 356777664 466654 334456789999999
Q ss_pred cCCCCCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCccCCcE
Q 001989 708 GTDAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIGADV 786 (985)
Q Consensus 708 ~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~g~Di 786 (985)
|+++++.+|+++|++++++. +++++|++++| |++|.+. |+++|.++|+++|+++|+|++|..+...+ ....+++|+
T Consensus 110 ~~~~~~~~d~~~l~~~l~~~-~~~~~v~~~~~~nptG~~~-~l~~i~~l~~~~~~~li~Dea~~~~~~~~-~~~~~~~di 186 (366)
T 1m32_A 110 DCGEVARPDVQAIDAILNAD-PTISHIAMVHSETTTGMLN-PIDEVGALAHRYGKTYIVDAMSSFGGIPM-DIAALHIDY 186 (366)
T ss_dssp ECCTTSCCCHHHHHHHHHHC-TTCCEEEEESEETTTTEEC-CHHHHHHHHHHHTCEEEEECTTTTTTSCC-CTTTTTCSE
T ss_pred eCCCCCCCCHHHHHHHHhcC-CCeEEEEEecccCCcceec-CHHHHHHHHHHcCCEEEEECCccccCcCc-cccccCccE
Confidence 99888899999999999842 25788888887 5689998 89999999999999999999986433222 223467999
Q ss_pred EEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCC-CCCC---CCCCCCCCCCcchhhhHHHHHHHHHHHH
Q 001989 787 CHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGI-PAPE---KSQPLGTIAAAPWGSALILPISYTYIAM 862 (985)
Q Consensus 787 ~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~-~~~~---~~~~~~~i~s~~~g~~~~~~~a~a~l~~ 862 (985)
+++|+||+++ |++|+|++++++++.+.+.....+...+. ..+. ........+. +...+.++.+.+..
T Consensus 187 ~~~s~~K~~~-----~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~a~~~al~~ 257 (366)
T 1m32_A 187 LISSANKCIQ-----GVPGFAFVIAREQKLAACKGHSRSLSLDLYAQWRCMEDNHGKWRFTS----PTHTVLAFAQALKE 257 (366)
T ss_dssp EEEESSSTTC-----CCSSEEEEEEEHHHHTTCTTCCSCSTTCHHHHHHHHHHTTTCCSSCC----CHHHHHHHHHHHHH
T ss_pred EEecCccccc-----CCCceEEEEECHHHHHhhcCCCCCccccHHHHHhhhcccCCCCCCCC----CHHHHHHHHHHHHH
Confidence 9999999984 34578999999877665532110000000 0000 0000000011 12222333455555
Q ss_pred hcHHH-HHHHHHHHHHHHHHHHHHhhc-cCCeeecC-CCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCCC
Q 001989 863 MGSKG-LTEASKIAILNANYMAKRLEK-HYPILFRG-VNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSW 939 (985)
Q Consensus 863 lg~eG-l~~~~~~~~~~a~~l~~~L~~-g~~l~~~~-~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~~ 939 (985)
+...| +.+..++..++++++.+.|++ ++.+..+. +... ..+.+.++. ..+.+..++.+.|.++||.+.....
T Consensus 258 ~~~~g~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~--~~~~~~~~~---~~~~~~~~~~~~l~~~gi~v~~~~~ 332 (366)
T 1m32_A 258 LAKEGGVAARHQRYQQNQRSLVAGMRALGFNTLLDDELHSP--IITAFYSPE---DPQYRFSEFYRRLKEQGFVIYPGKV 332 (366)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHHHHHHTTCCBSSCGGGBCS--SEEEEECCC---CTTCCHHHHHHHHHHTTEECEECCC
T ss_pred HHHccCHhHHHHHHHHHHHHHHHHHHHCCCeeccCchhcCc--eEEEEEcCc---cCCCCHHHHHHHHHHCCEEEECCcC
Confidence 55555 677778888999999999987 44432210 0011 124455531 0145788999999999998753222
Q ss_pred CCCCEEEEeccCCCCHHHHHHHHccCChhHHHHhh
Q 001989 940 PVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRL 974 (985)
Q Consensus 940 p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~ 974 (985)
...+.+|++++..+|++||++ +++.|+++++++
T Consensus 333 ~~~~~iRi~~~~~~~~~~i~~--~~~~l~~~~~~~ 365 (366)
T 1m32_A 333 SQSDCFRIGNIGEVYAADITA--LLTAIRTAMYWT 365 (366)
T ss_dssp SSSCEEEEECCSSCCHHHHHH--HHHHHHHHCTTC
T ss_pred CCCCEEEEecCCCCCHHHHHH--HHHHHHHHHHhc
Confidence 235799999999999999999 778888776543
|
| >1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=4e-21 Score=219.51 Aligned_cols=305 Identities=13% Similarity=0.056 Sum_probs=206.8
Q ss_pred HHHHHHHHHHHHHhCCCccc-eecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHH----HHHCCcEEEE
Q 001989 632 EMFNNLGEWLCTITGFDSFS-LQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPAT----AAMCGMKIVS 706 (985)
Q Consensus 632 ~~~~e~~~~la~l~G~~~~~-~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~----a~~~G~~vv~ 706 (985)
+...++++.+++++|.+... ++.++|++|+..++.+++ ..++++|+++...|..+... ++..|++++.
T Consensus 59 ~~~~~l~~~la~~~g~~~~~v~~~~g~t~a~~~~~~~~~-------~~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~ 131 (390)
T 1elu_A 59 QLIAQLRQALAETFNVDPNTITITDNVTTGCDIVLWGLD-------WHQGDEILLTDCEHPGIIAIVQAIAARFGITYRF 131 (390)
T ss_dssp HHHHHHHHHHHHHTTSCGGGEEEESSHHHHHHHHHHHSC-------CCTTCEEEEETTCCHHHHHHHHHHHHHHCCEEEE
T ss_pred HHHHHHHHHHHHHcCCCHHHEEEeCChHHHHHHHHhCCC-------CCCCCEEEEecCcccHHHHHHHHHHHHhCcEEEE
Confidence 45678999999999987644 556777777755544431 13678999998877665432 4567999999
Q ss_pred EcCC--CCCCCCHHHHHHHHHhcCCCEEEEEEEcCC-CccccccCHHHHHHHHH----HcCCEEEEEccccccccCCCCC
Q 001989 707 VGTD--AKGNINIEELRKAAEANRDNLSTLMVTYPS-THGVYEEGIDEICKIIH----DNGGQVYMDGANMNAQVGLTSP 779 (985)
Q Consensus 707 v~~d--~~g~iD~e~L~~~i~~~~~~t~~Vvv~~pn-~~G~i~~di~eI~~la~----~~galliVD~a~~~~~~~l~~p 779 (985)
+|.+ .++.+|+++|+++++ +++++|++++|+ ++|.+. |+++|.++|+ ++|+++++|+++..+...+ ..
T Consensus 132 v~~~~~~~~~~d~~~l~~~i~---~~~~~v~~~~~~nptG~~~-~~~~i~~l~~~~~~~~~~~li~Dea~~~g~~~~-~~ 206 (390)
T 1elu_A 132 FPVAATLNQGDAAAVLANHLG---PKTRLVILSHLLWNTGQVL-PLAEIMAVCRRHQGNYPVRVLVDGAQSAGSLPL-DF 206 (390)
T ss_dssp ECCGGGSSSSCHHHHHHTTCC---TTEEEEEEESBCTTTCCBC-CHHHHHHHHHHCCSSSCCEEEEECTTTBTTBCC-CT
T ss_pred EcCCCCCCccchHHHHHHhcC---CCceEEEEeccccCCceec-CHHHHHHHHhhhhhhcCcEEEEEcccccCCcCC-Ch
Confidence 9986 568899999999997 789999999984 699998 8999999999 9999999999986443222 22
Q ss_pred CccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCC-----C--CCC-C--CCCCCCCCCCcchhh
Q 001989 780 GYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGG-----I--PAP-E--KSQPLGTIAAAPWGS 849 (985)
Q Consensus 780 g~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~-----~--~~~-~--~~~~~~~i~s~~~g~ 849 (985)
..++.|+++.|+||++. ||+|+|++++++++.+.+.....|+... . ..+ . +....++. +
T Consensus 207 ~~~~~d~~~~s~~K~~~-----~~~g~G~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~------~ 275 (390)
T 1elu_A 207 SRLEVDYYAFTGHKWFA-----GPAGVGGLYIHGDCLGEINPTYVGWRSITYGAKGEPTGWAEGGKRFEVATS------A 275 (390)
T ss_dssp TTSCCSEEEEESSSTTC-----CCTTCEEEEECTTTGGGCCCCSCCTTTEEECTTSCEEEECSGGGGGCCSCC------C
T ss_pred hhcCCCEEEcccccccc-----CCCceEEEEECHHhHhhcCCccccCCcccccccCcccccccchHhhCCCCC------C
Confidence 35678999999999763 5678999999988776654332221000 0 000 0 00000111 1
Q ss_pred hHHHHHHHHHHHHhcHHH-HHHHHHHHHHHHHHHHHHhhccCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHH
Q 001989 850 ALILPISYTYIAMMGSKG-LTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLM 928 (985)
Q Consensus 850 ~~~~~~a~a~l~~lg~eG-l~~~~~~~~~~a~~l~~~L~~g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~ 928 (985)
.....++.+.+..+..++ +.+..++..++++++.+.|++..++.+..+.....+.+.+.++ .+.+..++.++|.
T Consensus 276 ~~~~~a~~~al~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~ 350 (390)
T 1elu_A 276 YPQYAGLLAALQLHQRQGTAEERYQAICQRSEFLWRGLNQLPHVHCLATSAPQAGLVSFTVD-----SPLGHRAIVQKLE 350 (390)
T ss_dssp HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHSTTEEESCSSCCSSSEEEEEEC-----SSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhcCCcEEecCccccccEEEEEcC-----CCCCHHHHHHHHH
Confidence 122222334455554555 7777788889999999999862233222110001112345553 2457889999999
Q ss_pred HCCCccCCCCCCCCCEEEEeccCCCCHHHHHHHHccCChh
Q 001989 929 DYGFHGPTMSWPVPGTLMIEPTESESKSWTGIVMLSSPSE 968 (985)
Q Consensus 929 ~~Gi~~~~~~~p~~~~lris~t~~~t~eeId~~~~~~~l~ 968 (985)
++||.+.... .++.+||+++..++++|+++ +++.|+
T Consensus 351 ~~gi~v~~~~--~~~~iRis~~~~~~~~~i~~--~~~~l~ 386 (390)
T 1elu_A 351 EQRIYLRTIA--DPDCIRACCHYITDEEEINH--LLARLA 386 (390)
T ss_dssp HTTEECEEET--TTTEEEEECCTTCCHHHHHH--HHHHHT
T ss_pred HCCEEEEecC--CCCeEEEecccCCCHHHHHH--HHHHHH
Confidence 9999875432 14799999999999999999 555554
|
| >1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.88 E-value=1.8e-21 Score=223.05 Aligned_cols=310 Identities=15% Similarity=0.106 Sum_probs=210.2
Q ss_pred HHHHHHHHHHHHHHHhCCCcc--ceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcc--cHHHHHHCCcEEE
Q 001989 630 YQEMFNNLGEWLCTITGFDSF--SLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGT--NPATAAMCGMKIV 705 (985)
Q Consensus 630 ~~~~~~e~~~~la~l~G~~~~--~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~--~~~~a~~~G~~vv 705 (985)
..+..+++++++++++|.+.. .++.++|++|+..++.++. .++++|++++..|.. +...++..|++++
T Consensus 65 ~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~al~~~~~~~~--------~~gd~Vl~~~~~~~~~~~~~~~~~~g~~~~ 136 (393)
T 1vjo_A 65 FLALMDEIQSLLRYVWQTENPLTIAVSGTGTAAMEATIANAV--------EPGDVVLIGVAGYFGNRLVDMAGRYGADVR 136 (393)
T ss_dssp HHHHHHHHHHHHHHHHTCCCSCEEEESSCHHHHHHHHHHHHC--------CTTCEEEEEESSHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHHHHHHHhCCCCCcEEEEeCchHHHHHHHHHhcc--------CCCCEEEEEcCChhHHHHHHHHHHcCCceE
Confidence 456778899999999999754 3556777777755554431 367899998876665 4555678899999
Q ss_pred EEcCCCCCCCCHHHHHHHHHhcCC-CEEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCccC
Q 001989 706 SVGTDAKGNINIEELRKAAEANRD-NLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIG 783 (985)
Q Consensus 706 ~v~~d~~g~iD~e~L~~~i~~~~~-~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~g 783 (985)
.+|.++++.+|+++|+++++ + ++++|++++| |++|.+. |+++|.++|+++|+++++|+++..+...+ ....++
T Consensus 137 ~v~~~~~~~~d~~~l~~~l~---~~~~~~v~~~~~~nptG~~~-~l~~i~~l~~~~~~~li~Dea~~~g~~~~-~~~~~~ 211 (393)
T 1vjo_A 137 TISKPWGEVFSLEELRTALE---THRPAILALVHAETSTGARQ-PLEGVGELCREFGTLLLVDTVTSLGGVPI-FLDAWG 211 (393)
T ss_dssp EEECCTTCCCCHHHHHHHHH---HHCCSEEEEESEETTTTEEC-CCTTHHHHHHHHTCEEEEECTTTTTTSCC-CTTTTT
T ss_pred EEecCCCCCCCHHHHHHHHh---hCCceEEEEeccCCCcceec-cHHHHHHHHHHcCCEEEEECCccccCcCC-cccccC
Confidence 99998888999999999998 5 7889999998 6799998 89999999999999999999986332221 234567
Q ss_pred CcEEEeCCcccccccCCCCCCceEEEEEcccccCcC-------CCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHH
Q 001989 784 ADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFL-------PSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPIS 856 (985)
Q Consensus 784 ~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~l-------p~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a 856 (985)
+|+++.|+||+|+.| .++|++++++++.+.+ .+..++.+...+.......... +. +.....++
T Consensus 212 ~di~~~s~sK~l~~~-----~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~----~~~~~~a~ 281 (393)
T 1vjo_A 212 VDLAYSCSQKGLGCS-----PGASPFTMSSRAIEKLQRRRTKVANWYLDMNLLGKYWGSERVYHH-TA----PINLYYAL 281 (393)
T ss_dssp CSEEECCSSSTTCSC-----SSCEEEEECHHHHHHHHTCSSCCSCSTTCHHHHHHHHSTTCCCCS-CC----CHHHHHHH
T ss_pred ccEEEEcCcccccCC-----CceEEEEECHHHHHHHhccCCCCCceecCcHhhhhhhccCCCCCC-CC----CHHHHHHH
Confidence 899999999998532 2789999997755433 1111110000000000000000 11 12223334
Q ss_pred HHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCc-eeeEEEEEecCccccCCCCHHHHHHHHHHC-CCc
Q 001989 857 YTYIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGT-VAHEFIVDLRGLKNTAGIEPEDVAKRLMDY-GFH 933 (985)
Q Consensus 857 ~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~-~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~-Gi~ 933 (985)
.+++..+..+++.+..++..++++++.+.|++ ++.+. .+.+. ..+.+.+.++ .+.+..++.++|.++ ||.
T Consensus 282 ~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~--~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~~~~gi~ 354 (393)
T 1vjo_A 282 REALRLIAQEGLANCWQRHQKNVEYLWERLEDIGLSLH--VEKEYRLPTLTTVCIP-----DGVDGKAVARRLLNEHNIE 354 (393)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCBS--SCGGGBCSSEEEEECC-----TTCCHHHHHHHHHHHHCEE
T ss_pred HHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHcCCccc--CCccccCCcEEEEEcC-----CCCCHHHHHHHHHhhCCEE
Confidence 45566655566778888889999999999987 44442 22111 1122345543 245788999999988 998
Q ss_pred cCCCC-CCCCCEEEEecc-CCCCHHHHHHHHccCChhHHH
Q 001989 934 GPTMS-WPVPGTLMIEPT-ESESKSWTGIVMLSSPSEKKL 971 (985)
Q Consensus 934 ~~~~~-~p~~~~lris~t-~~~t~eeId~~~~~~~l~~~~ 971 (985)
+.... +..++.+||++. ..++++++++ +++.|++++
T Consensus 355 v~~g~~~~~~~~iRis~~~~~~~~~~i~~--~~~~l~~~l 392 (393)
T 1vjo_A 355 VGGGLGELAGKVWRVGLMGFNSRKESVDQ--LIPALEQVL 392 (393)
T ss_dssp CEECCGGGTTTEEEEECCGGGCSHHHHHH--HHHHHHHHH
T ss_pred EecCccccCCCEEEEeCCccCChHHHHHH--HHHHHHHHh
Confidence 75432 223589999964 5567888999 777777654
|
| >1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin; HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB: 1js6_A* 3rch_A* 3rbl_A 3rbf_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=7.2e-21 Score=225.13 Aligned_cols=354 Identities=11% Similarity=0.015 Sum_probs=226.3
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhcCCCc---cceecCCCCCCCC--CcHHHHHHHHhCCcccccc-CCChhh--HhhhHHH
Q 001989 140 KFSKFDEGLTESQMIEHMQKLASMNKV---YKSFIGMGYYNTH--VPPVILRNIMENPAWYTQY-TPYQAE--IAQGRLE 211 (985)
Q Consensus 140 ~lp~~~~~~se~e~~~~~~~l~~~n~~---~~~~lG~g~y~~~--~p~~v~~~i~~~~~~~t~~-~pyq~e--~sqg~l~ 211 (985)
.+| .++.++.+++++++++...+.. ...|+|- ++.. .|..+.+. ++++ ++++.. .+.+..+
T Consensus 45 ~~p--~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~--~~~~~~~~~~~~~~-------~~~~~n~~~~~~~~~~~~~~ 113 (486)
T 1js3_A 45 TAP--QEPDTFEDILQDVEKIIMPGVTHWHSPYFFAY--FPTASSYPAMLADM-------LCGAIGCIGFSWAASPACTE 113 (486)
T ss_dssp SCC--SSCCCHHHHHHHHHHTTGGGCCCTTSTTBCSS--SCCCCCHHHHHHHH-------HHHHHCCCCSSGGGCHHHHH
T ss_pred cCC--CCCCCHHHHHHHHHHHHhcCCCCCCCCCceEe--CCCCCCHHHHHHHH-------HHHHhCcCccccccChhHHH
Confidence 456 5789999999999997655532 2345553 3322 33334332 2222 444433 3444556
Q ss_pred HHHHHHHHHHHhcCCCCc---------ceeeccchHHHHHHHHHHhhhhc-C-----CC---------C-EEEEcCCCCh
Q 001989 212 SLLNFQTMIADLTGLPMS---------NASLLDEGTAAAEAMAMCNNIQK-G-----KK---------K-TFIIASNCHP 266 (985)
Q Consensus 212 ~i~e~q~~ia~L~g~~~~---------~~sl~~~~ta~~ea~~~a~~~~~-~-----~g---------~-~Vlv~~~~H~ 266 (985)
...+...++++++|++.+ .+.+++|||.++..++++.+... + .| + .|+++...|+
T Consensus 114 le~~~~~~la~l~g~~~~~~~~~~~~~~~v~t~ggTeA~~~al~~~~~~~~~~~~~~~gd~~~~~~~~~~~v~~s~~~h~ 193 (486)
T 1js3_A 114 LETVMMDWLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTKVVRRLQAASPGLTQGAVLEKLVAYASDQAHS 193 (486)
T ss_dssp HHHHHHHHHHHHTTCCGGGCCTTTCSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHEEEEEETTCCH
T ss_pred HHHHHHHHHHHHhCCCchhcccCCCCCCeEEcCCcHHHHHHHHHHHHHHHhhhhhccCccchhcccCCCEEEEECCCCcH
Confidence 666677899999999863 47899999966554444332110 0 02 2 3789999999
Q ss_pred hHHHHHHHhhcCCCeEEEEeCc--------hhhhc-cCCCE------eEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEE
Q 001989 267 QTIDICITRADGFDIKVVVSDL--------KDIDY-KSGDV------CGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVV 330 (985)
Q Consensus 267 s~~~~~~~~a~~~gi~v~~v~~--------~~l~~-l~~~t------~~V~v~~p-n~~G~v~di~~I~~~a~~~galli 330 (985)
++...++. .|++++.++. ++|++ +++++ .+|++++| |++|.++|+++|+++||++|++++
T Consensus 194 s~~~~~~~----~G~~v~~v~~d~~~~~d~~~L~~~i~~~~~~g~~p~~vv~~~~~n~tG~~~~l~~I~~la~~~~~~lh 269 (486)
T 1js3_A 194 SVERAGLI----GGVKLKAIPSDGKFAMRASALQEALERDKAAGLIPFFVVATLGTTSCCSFDNLLEVGPICHEEDIWLH 269 (486)
T ss_dssp HHHHHHHH----HTCEEEEECCCTTSCCCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHh----CCCceEEeecCCCCCCCHHHHHHHHHHHHhCCCCceEEEEeCCCCCCCCCCCHHHHHHHHHHcCCEEE
Confidence 99988764 4788888765 35665 65555 37888888 789999999999999999999999
Q ss_pred EEecCccccCCCCC-------CcccceEEEecC-ccccccCCCCCCcEEEEEEchh--hHhcC---CCceeeeeecCCCC
Q 001989 331 MATDLLALTILKPP-------GELGADIVVGSA-QRFGVPMGYGGPHAAFLATSQE--YKRMM---PGRIVGVSIDSSGK 397 (985)
Q Consensus 331 V~a~~~~lg~l~~~-------~~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~--~~~~l---p~~~vG~t~d~~g~ 397 (985)
||+ .++.+.+..+ +-.++|++++++ |+++.|+ ++|+++++++ +.+.+ ++.+.+...+..+.
T Consensus 270 vD~-a~g~~~~~~~~~~~~~~g~~~adsi~~~~hK~~~~p~-----~~G~l~~~~~~~l~~~~~~~~~yl~~~~~~~~~~ 343 (486)
T 1js3_A 270 VDA-AYAGSAFICPEFRHLLNGVEFADSFNFNPHKWLLVNF-----DCSAMWVKRRTDLTGAFKLDPVYLKHSHQGSGLI 343 (486)
T ss_dssp EEC-TTGGGGGGSTTTGGGGTTGGGCSEEEECHHHHSSCCS-----SCEEEEESCHHHHHGGGC------------CCSC
T ss_pred Eeh-hhHHHHHHCHHHHHHhcCccccCeeEEchhhhcCCCc-----ceEEEEEeCHHHHHHHhcCCchhhCCCcccccCC
Confidence 964 3443332211 124799999998 6665553 4689999764 34544 33333311100000
Q ss_pred cceeeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCCCcce
Q 001989 398 PALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDT 477 (985)
Q Consensus 398 ~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~~~~~ 477 (985)
..|. .. .-+..||. ...++.++ +..+|.+|++++.++..++++++.+.|+++.+++++.++.++.
T Consensus 344 ~~~~-~~--~~~~~rr~----------~~~~~~~a--l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~ 408 (486)
T 1js3_A 344 TDYR-HW--QLPLGRRF----------RSLKMWFV--FRMYGVKGLQAYIRKHVQLSHEFEAFVLQDPRFEVCAEVTLGL 408 (486)
T ss_dssp CCGG-GS--SSCSCCCC----------THHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTEEECSCCCSSE
T ss_pred CCcc-cc--CCCCCCch----------hHHHHHHH--HHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCceeE
Confidence 0000 00 00111221 11222233 3567889999999999999999999999984499986566677
Q ss_pred EEEecCC----HHHHHHHHHHcCcee-ee--ec-CCeEEEEe-ccCCCHHHHHHHHHHHhC
Q 001989 478 VKVKCAD----AHAIASAAYKIEMNL-RV--VD-SNTVTASF-DETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 478 ~~~~~~~----~~~v~~~L~~~GI~~-~~--~~-~~~lris~-t~~~t~edId~li~aL~~ 529 (985)
+.|..++ ..++.++|.++|+.+ .. +. .+.+|+++ +.++|++|||+++++|.+
T Consensus 409 v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~lRi~~~~~~~t~~di~~~~~~l~~ 469 (486)
T 1js3_A 409 VCFRLKGSDGLNEALLERINSARKIHLVPCRLRGQFVLRFAICSRKVESGHVRLAWEHIRG 469 (486)
T ss_dssp EEEEESSCHHHHHHHHHHHHHHTSCBCEEEEETTEEEEEEECCCTTCCHHHHHHHHHHHHH
T ss_pred EEEEecChHHHHHHHHHHHHhcCCEEEEEEEECCEEEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 7777653 578899998888643 22 12 36799997 557899999999999974
|
| >3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.88 E-value=2.7e-21 Score=222.65 Aligned_cols=307 Identities=15% Similarity=0.094 Sum_probs=199.9
Q ss_pred HHHHHHHHHHHHHHHhCCCccc-eecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHH----HHCCcEE
Q 001989 630 YQEMFNNLGEWLCTITGFDSFS-LQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATA----AMCGMKI 704 (985)
Q Consensus 630 ~~~~~~e~~~~la~l~G~~~~~-~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a----~~~G~~v 704 (985)
..+...++++++++++|.+... ++.++|++++..++.++.. ...++++||++...|+++.... +..|+++
T Consensus 67 ~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~al~~~~~~l~~-----~~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~v 141 (406)
T 3cai_A 67 SAAVLDAAREAVADLVNADPGGVVLGADRAVLLSLLAEASSS-----RAGLGYEVIVSRLDDEANIAPWLRAAHRYGAKV 141 (406)
T ss_dssp HHHHHHHHHHHHHHHHTCCGGGEEEESCHHHHHHHHHHHTGG-----GGBTTCEEEEETTSCGGGTHHHHHHHHHHBCEE
T ss_pred HHHHHHHHHHHHHHHhCCCCCeEEEeCChHHHHHHHHHHHhh-----ccCCCCEEEEcCCccHHHHHHHHHHHHhcCCeE
Confidence 4566788999999999997544 4455666665444333210 0136789999988887654433 2369999
Q ss_pred EEEcCC-CCCCCCHHHHHHHHHhcCCCEEEEEEEcCC-CccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCcc
Q 001989 705 VSVGTD-AKGNINIEELRKAAEANRDNLSTLMVTYPS-THGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYI 782 (985)
Q Consensus 705 v~v~~d-~~g~iD~e~L~~~i~~~~~~t~~Vvv~~pn-~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~ 782 (985)
+.+|++ +++.+|+++|+++++ +++++|++++|+ ++|.+. |+++|.++|+++|+++++|++|..+...+ ....+
T Consensus 142 ~~v~~~~~~~~~d~~~l~~~l~---~~~~~v~~~~~~nptG~~~-~l~~i~~l~~~~~~~li~D~a~~~g~~~~-~~~~~ 216 (406)
T 3cai_A 142 KWAEVDIETGELPTWQWESLIS---KSTRLVAVNSASGTLGGVT-DLRAMTKLVHDVGALVVVDHSAAAPYRLL-DIRET 216 (406)
T ss_dssp EEECCCTTTCCCCGGGHHHHCC---TTEEEEEEESBCTTTCBBC-CCHHHHHHHHHTTCEEEEECTTTTTTCCC-CHHHH
T ss_pred EEEecCcccCCcCHHHHHHHhC---CCceEEEEeCCcCCccccC-CHHHHHHHHHHcCCEEEEEcccccCCCCC-Cchhc
Confidence 999998 678999999999997 789999999984 799998 89999999999999999999986432211 22346
Q ss_pred CCcEEEeCCcccccccCCCCCCceE-EEEEcccccCcCCCCc--cccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHH
Q 001989 783 GADVCHLNLHKTFCIPHGGGGPGMG-PIGVKKHLAPFLPSHP--VVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTY 859 (985)
Q Consensus 783 g~Di~~~s~hK~l~~p~g~GGPg~G-~i~~~~~l~~~lp~~~--~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~ 859 (985)
++|++++|+||++ ||++| ++++++++.+.+.... ++... ......++.+. .+. .++.+++..
T Consensus 217 ~~d~~~~s~~K~~-------g~~~G~~~~~~~~~~~~l~~~~~~~~~~~---~~~~~~~t~~~----~~~-~a~~~al~~ 281 (406)
T 3cai_A 217 DADVVTVNAHAWG-------GPPIGAMVFRDPSVMNSFGSVSTNPYATG---PARLEIGVHQF----GLL-AGVVASIEY 281 (406)
T ss_dssp CCSEEEEEGGGGT-------SCSCEEEEESCHHHHHTSCCCCSCTTCCG---GGGGCCSCCCH----HHH-HHHHHHHHH
T ss_pred CCCEEEeehhhhc-------CCCcCeEEEEehHHHhhcCCcccCCCCCc---cccccCCCccH----HHH-HHHHHHHHH
Confidence 7999999999976 24577 9999887665443221 11000 00000111111 111 111222223
Q ss_pred HHHhcH-----------HHHHHHHHHHHHHHHHHHHHhhccCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHH
Q 001989 860 IAMMGS-----------KGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLM 928 (985)
Q Consensus 860 l~~lg~-----------eGl~~~~~~~~~~a~~l~~~L~~g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~ 928 (985)
+...|. +.+.+..++..++++++.+.|++..++...++.......+.+.++ +.+..++.+.|.
T Consensus 282 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~L~ 355 (406)
T 3cai_A 282 LAALDESARGSRRERLAVSMQSADAYLNRVFDYLMVSLRSLPLVMLIGRPEAQIPVVSFAVH------KVPADRVVQRLA 355 (406)
T ss_dssp HHTSSTTCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTEEECCCCSSBCSEEEEEET------TBCHHHHHHHHH
T ss_pred HHHhccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCccccCCEEEEEEC------CcCHHHHHHHHH
Confidence 322220 136667777888999999999873233222221111222445554 356889999999
Q ss_pred HCCCccCCCC-------CC---CCCEEEEeccCCCCHHHHHHHHccCChhH
Q 001989 929 DYGFHGPTMS-------WP---VPGTLMIEPTESESKSWTGIVMLSSPSEK 969 (985)
Q Consensus 929 ~~Gi~~~~~~-------~p---~~~~lris~t~~~t~eeId~~~~~~~l~~ 969 (985)
++||.+.... +. ..+.+||+++..+|++|+++ +++.|++
T Consensus 356 ~~gi~v~~g~~~~~~~~~g~~~~~~~iRis~~~~~t~e~i~~--~~~~l~~ 404 (406)
T 3cai_A 356 DNGILAIANTGSRVLDVLGVNDVGGAVTVGLAHYSTMAEVDQ--LVRALAS 404 (406)
T ss_dssp HTTEECEECCSCHHHHHHTTTTTTCCEEEECCTTCCHHHHHH--HHHHHHT
T ss_pred HCCcEEecCChHHHHHHcCCCCCCCeEEEEeecCCCHHHHHH--HHHHHHH
Confidence 9999875322 11 13789999999999999999 5555543
|
| >3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase, pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.88 E-value=9e-20 Score=216.46 Aligned_cols=353 Identities=12% Similarity=0.079 Sum_probs=233.7
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhcCCCccceecCCCCCCCCCcHHHHHHHHhCCccccccCCChhhHhhhHHHHHHHHHH
Q 001989 139 MKFSKFDEGLTESQMIEHMQKLASMNKVYKSFIGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQT 218 (985)
Q Consensus 139 ~~lp~~~~~~se~e~~~~~~~l~~~n~~~~~~lG~g~y~~~~p~~v~~~i~~~~~~~t~~~pyq~e~sqg~l~~i~e~q~ 218 (985)
..+| ..+.+..++.+.+++....+.. ..+..+.+..+..++.+.+.+.+. +.. ..+.+..+.+..+...++++
T Consensus 30 ~~~p--~~~~~~~~~~~~~~~~i~l~gn-p~~~l~s~~t~~~~~~v~~~l~~~---~~~-~~~~~~~~p~~~~le~~~~~ 102 (502)
T 3hbx_A 30 FKMP--ENSIPKEAAYQIINDELMLDGN-PRLNLASFVTTWMEPECDKLIMSS---INK-NYVDMDEYPVTTELQNRCVN 102 (502)
T ss_dssp SSCC--SSCCCHHHHHHHHHHHGGGSCC-GGGBTTCCSCCCCCHHHHHHHHHT---TTC-BTTCTTTCHHHHHHHHHHHH
T ss_pred CCCC--CCCCCHHHHHHHHHHHhccCCC-CCceeccccCCCCCHHHHHHHHHH---hcc-CCCChhcChhHHHHHHHHHH
Confidence 3466 4678999999999876543321 111123344456777776554432 111 11122345567788888999
Q ss_pred HHHHhcCCC--Ccc---eeeccchHHHHHHHHHHhhhh-----cCCCC-----EEEEcCCCChhHHHHHHHhhcCCCeEE
Q 001989 219 MIADLTGLP--MSN---ASLLDEGTAAAEAMAMCNNIQ-----KGKKK-----TFIIASNCHPQTIDICITRADGFDIKV 283 (985)
Q Consensus 219 ~ia~L~g~~--~~~---~sl~~~~ta~~ea~~~a~~~~-----~~~g~-----~Vlv~~~~H~s~~~~~~~~a~~~gi~v 283 (985)
++++++|++ ..+ ..++.|||.++..++++.+.. +.+|+ +|++++..|+++...++. .|+++
T Consensus 103 ~la~l~g~~~~~~~~~~g~~t~ggtea~~~a~~a~~~~~~~~~~~~G~~~~~~~vi~~~~~h~s~~~~~~~----~G~~~ 178 (502)
T 3hbx_A 103 MIAHLFNAPLEEAETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPVDKPNIVTGANVQVCWEKFARY----FEVEL 178 (502)
T ss_dssp HHHHHTTCCCCSSCCCEEEEESSHHHHHHHHHHHHHHHHHHHHHHTTCCCSCCEEEEETTCCHHHHHHHHH----TTCEE
T ss_pred HHHHHhCCCcccccCCcceecCcHHHHHHHHHHHHHHHHhHHHHhcCCCCCCcEEEEcCCchHHHHHHHHH----cCcee
Confidence 999999998 332 334788887666555543221 01244 999999999998888653 58888
Q ss_pred EEeCc---------hhhhc-cCCCEeEEEEEcC-CCCeeeccHHHHHHHHHhC------CcEEEEEecCccccC---CCC
Q 001989 284 VVSDL---------KDIDY-KSGDVCGVLVQYP-GTEGEVLDYGDFIKNAHAN------GVKVVMATDLLALTI---LKP 343 (985)
Q Consensus 284 ~~v~~---------~~l~~-l~~~t~~V~v~~p-n~~G~v~di~~I~~~a~~~------galliV~a~~~~lg~---l~~ 343 (985)
+.++. ++|++ ++++|++|++++| |++|.+.|+++|+++||++ |++++||+ .++.++ +.+
T Consensus 179 ~~v~~~~~~~~~d~~~l~~~i~~~t~~v~~~~~~n~tG~~~~l~~I~~ia~~~~~~~~~~~~l~VD~-A~~~~~~p~~~~ 257 (502)
T 3hbx_A 179 KEVKLSEGYYVMDPQQAVDMVDENTICVAAILGSTLNGEFEDVKLLNDLLVEKNKETGWDTPIHVDA-ASGGFIAPFLYP 257 (502)
T ss_dssp EEECCBTTBCSCCHHHHHHHCCTTEEEEEEEBSCTTTCCBCCHHHHHHHHHHHHHHHCCCCCEEEEC-TTGGGTHHHHCT
T ss_pred EEEecCCCcCcCCHHHHHHHHhhCCEEEEEecCCCCCCcccCHHHHHHHHHHhhhccCCCCeEEEEC-CccchhhhhhCc
Confidence 88764 34555 8889999999987 6799999999999999999 99999953 233111 111
Q ss_pred C-----CcccceEEEecCccccccCCCCCCcEEEEEEch-hhH-hcCCC--ceeeeeecCCCCcceeeeccccccccccc
Q 001989 344 P-----GELGADIVVGSAQRFGVPMGYGGPHAAFLATSQ-EYK-RMMPG--RIVGVSIDSSGKPALRVAMQTREQHIRRD 414 (985)
Q Consensus 344 ~-----~~~GaDi~v~s~k~lg~P~~~GGP~~G~l~~~~-~~~-~~lp~--~~vG~t~d~~g~~~~~l~l~tre~~irre 414 (985)
. ...|+|++++++++++ +|++++|++++++ +.+ +.+.. ...|. ....|.+
T Consensus 258 ~~~~~~~~~~~D~v~~s~hK~l----~~p~g~G~~~~~~~~~l~~~~~~~~~yl~~-----~~~~~~~------------ 316 (502)
T 3hbx_A 258 ELEWDFRLPLVKSINVSGHKYG----LVYAGIGWVIWRNKEDLPEELIFHINYLGA-----DQPTFTL------------ 316 (502)
T ss_dssp TCCCSTTSTTEEEEEEETTTTT----CCCSSCEEEEESSGGGSCGGGCEEECSSSS-----CEEECCS------------
T ss_pred ccccccCCCCceEEEECccccc----CCCCCeEEEEEeCHHHhhHHhccCcccccC-----CCCCccc------------
Confidence 1 2358999999995553 2345678888875 333 11100 00110 0000100
Q ss_pred ccCCCccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCC-CCcceEEEecCC-----HHHH
Q 001989 415 KATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGL-PFFDTVKVKCAD-----AHAI 488 (985)
Q Consensus 415 ~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~-~~~~~~~~~~~~-----~~~v 488 (985)
.++.+. ....++.++ +..+|.+|++++.++..+++++|+++|+++|+++++.+ +..+.+.|+.++ ..++
T Consensus 317 ~~sr~~---~~~~a~~~a--l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~l 391 (502)
T 3hbx_A 317 NFSKGS---SQVIAQYYQ--LIRLGHEGYRNVMENCRENMIVLREGLEKTERFNIVSKDEGVPLVAFSLKDSSCHTEFEI 391 (502)
T ss_dssp CCSCBS---HHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEECSCSSSSSEEEEEESSCSSCCHHHH
T ss_pred cCCchH---HHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeCCCCceEEEEEecCCCcCCHHHH
Confidence 011111 122233333 36678899999999999999999999999977999865 566777776542 5699
Q ss_pred HHHHHHcCceeeeec-------CCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 489 ASAAYKIEMNLRVVD-------SNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 489 ~~~L~~~GI~~~~~~-------~~~lris~t~~~t~edId~li~aL~~ 529 (985)
.++|.++||.++... ...+|++++..+|+||+|+|+++|.+
T Consensus 392 ~~~L~~~Gi~v~~~~~p~~~~~~~~lRisv~~~~t~edid~li~~L~~ 439 (502)
T 3hbx_A 392 SDMLRRYGWIVPAYTMPPNAQHITVLRVVIREDFSRTLAERLVIDIEK 439 (502)
T ss_dssp HHHHHTTTCBCCEEECCTTCTTCEEEEEECCTTCCHHHHHHHHHHHHH
T ss_pred HHHHHhCCcEEeeccCCcccCCceEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 999999999875331 24799999999999999999999985
|
| >1iug_A Putative aspartate aminotransferase; wild type, pyridoxal-5'-phosphate form, riken structural genomics/proteomics initiative, RSGI; HET: LLP; 2.20A {Thermus thermophilus} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.88 E-value=3.1e-21 Score=217.15 Aligned_cols=307 Identities=11% Similarity=0.049 Sum_probs=206.2
Q ss_pred HHHHHHHHHHHHHHHhCCCcc-ceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccH--HHHHHCCcEEEE
Q 001989 630 YQEMFNNLGEWLCTITGFDSF-SLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNP--ATAAMCGMKIVS 706 (985)
Q Consensus 630 ~~~~~~e~~~~la~l~G~~~~-~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~--~~a~~~G~~vv~ 706 (985)
..+...++++++++++|.+.. .++.++|++|+..++.++. .++++|++++..|.++. ..++..|++++.
T Consensus 32 ~~~~~~~l~~~la~~~g~~~~~i~~~~g~t~a~~~~~~~~~--------~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~ 103 (352)
T 1iug_A 32 AREVFLKARGLLREAFRTEGEVLILTGSGTLAMEALVKNLF--------APGERVLVPVYGKFSERFYEIALEAGLVVER 103 (352)
T ss_dssp HHHHHHHHHHHHHHHHTCSSEEEEEESCHHHHHHHHHHHHC--------CTTCEEEEEECSHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHHHHHHhCCCCceEEEcCchHHHHHHHHHhcc--------CCCCeEEEEeCCchhHHHHHHHHHcCCceEE
Confidence 345577899999999999753 3556777877755554431 36789999887666654 223558999999
Q ss_pred EcCCCCCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccCHHHHHHHHHHc--CCEEEEEccccccccCCCCCCccC
Q 001989 707 VGTDAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDN--GGQVYMDGANMNAQVGLTSPGYIG 783 (985)
Q Consensus 707 v~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~--galliVD~a~~~~~~~l~~pg~~g 783 (985)
+|+++++.+|+++|++ +++++|++++| |++|.+. |+++|.++|+++ |+++|+|++|..+...+ ....++
T Consensus 104 v~~~~~~~~d~~~l~~------~~~~~v~~~~~~nptG~~~-~l~~i~~l~~~~~~~~~li~D~a~~~~~~~~-~~~~~~ 175 (352)
T 1iug_A 104 LDYPYGDTPRPEDVAK------EGYAGLLLVHSETSTGALA-DLPALARAFKEKNPEGLVGADMVTSLLVGEV-ALEAMG 175 (352)
T ss_dssp EECCTTCCCCTTTSCC------SSCSEEEEESEETTTTEEC-CHHHHHHHHHHHCTTCEEEEECTTTBTTBCC-CSGGGT
T ss_pred EeCCCCCCCCHHHHhc------cCCcEEEEEEecCCcceec-CHHHHHHHHHhhCCCCEEEEECCccccCcce-eccccC
Confidence 9998888899988765 36778999998 5799998 899999999999 99999999986433222 233457
Q ss_pred CcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCC-C-CCCCCCCCCCCCCCcchhhhHHHHHHHHHHH
Q 001989 784 ADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGG-I-PAPEKSQPLGTIAAAPWGSALILPISYTYIA 861 (985)
Q Consensus 784 ~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~-~-~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~ 861 (985)
+|++++|+||++. |++|+|++++++++.+.+.......... . .........++. +.....++.+.+.
T Consensus 176 ~d~~~~s~~K~~~-----~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~a~~~al~ 244 (352)
T 1iug_A 176 VDAAASGSQKGLM-----CPPGLGFVALSPRALERLKPRGYYLDLARELKAQKEGESAWTP------AINLVLAVAAVLE 244 (352)
T ss_dssp CSEEEEESSSTTC-----CCSCEEEEEECHHHHHTCCCCSSTTCHHHHHHHHTTTCCSSCC------CHHHHHHHHHHHH
T ss_pred eeEEEecCccccc-----CCCceeEEEECHHHHHHhhCCCceeeHHHHHhhcccCCCCCCC------CHHHHHHHHHHHH
Confidence 9999999999874 3347899999877554332100000000 0 000000001111 1122222334455
Q ss_pred HhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCCCC
Q 001989 862 MMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWP 940 (985)
Q Consensus 862 ~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~~p 940 (985)
.+... +.+..++..++++++.+.|++ ++.+. .+. ...+.+.+.++ .+.+..++.++|.++||.+.....+
T Consensus 245 ~~~~~-~~~~~~~~~~~~~~l~~~L~~~g~~~~--~~~-~~~~~~~~~~~-----~~~~~~~~~~~l~~~gi~v~~~~~~ 315 (352)
T 1iug_A 245 EVLPR-LEEHLALKAWQNALLYGVGEEGGLRPV--PKR-FSPAVAAFYLP-----EGVPYARVKEAFAQRGAVIAGGQGP 315 (352)
T ss_dssp HHGGG-HHHHHHHHHHHHHHHHHHHHHTTCEES--CSS-BCTTCEEEECC-----TTCCHHHHHHHHHTTTEECEECCGG
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHCCCccc--ccc-cCCeEEEEEcC-----CCCCHHHHHHHHHHCCEEEEeCCCc
Confidence 54444 677777888999999999987 34332 221 01112445554 2467889999999999987543222
Q ss_pred -CCCEEEEeccCCCCHHHHHHHHccCChhHHHHhh
Q 001989 941 -VPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRL 974 (985)
Q Consensus 941 -~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~ 974 (985)
..+.+||+++..+|++|+++ +++.|+++++++
T Consensus 316 ~~~~~iRi~~~~~~~~~~i~~--~~~~l~~~~~~~ 348 (352)
T 1iug_A 316 LKGKVFRLSLMGAYDRYEALG--VAGMFREVLEEI 348 (352)
T ss_dssp GTTTEEEECCCSSCCHHHHHH--HHHHHHHHHHHH
T ss_pred cCCCEEEEEccccCCHHHHHH--HHHHHHHHHHHh
Confidence 24799999999999999999 888999888765
|
| >3ke3_A Putative serine-pyruvate aminotransferase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP; 2.20A {Psychrobacter arcticus 273-4} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.9e-21 Score=222.58 Aligned_cols=317 Identities=14% Similarity=0.065 Sum_probs=205.5
Q ss_pred hhHHHHHHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccH--HHHHHCC--cE
Q 001989 628 QGYQEMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNP--ATAAMCG--MK 703 (985)
Q Consensus 628 ~G~~~~~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~--~~a~~~G--~~ 703 (985)
+.+.++++++++.+++++|.+...++++||++|+++++ +.+ .++++||+++..|..+. ..++..| .+
T Consensus 31 ~~~~~~~~~~~~~l~~~~~~~~~v~~~~sgt~a~~~~~---~~~------~~gd~vi~~~~~~~~~~~~~~~~~~g~~~~ 101 (379)
T 3ke3_A 31 KAFQEVMNDLLSNLKTVYNAEAAVIIPGSGTYGMEAVA---RQL------TIDEDCLIIRNGWFSYRWTQILEKGKFAKS 101 (379)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHH---HHH------CTTCEEEEEECSHHHHHHHHHHHHHCCSSE
T ss_pred HHHHHHHHHHHHHHHHHhCCCCEEEEcCChhHHHHHHH---HhC------CCCCeEEEEeCCchhHHHHHHHHHhCCCCc
Confidence 34557888999999999999855566678888876543 222 36789998776443332 2234445 58
Q ss_pred EEEEcCCCC---------CCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccC---HHHHHHHHHHcCCEEEEEcccc
Q 001989 704 IVSVGTDAK---------GNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEG---IDEICKIIHDNGGQVYMDGANM 770 (985)
Q Consensus 704 vv~v~~d~~---------g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~d---i~eI~~la~~~galliVD~a~~ 770 (985)
++.++++++ +.+|+++|+++++. +++++|+++++ |.+|.+. | +++|+++||++|+++++|++|.
T Consensus 102 ~~~~~~~~~g~~~~~~~~~~~d~~~l~~~i~~--~~~~~v~~~~~~~~~G~~~-~~~~l~~i~~~~~~~~~~li~D~~~~ 178 (379)
T 3ke3_A 102 STVLTAERTEDTEAPKPFAPVDIETAVAKIKE--DKSAIVYAPHVETSSGIIL-SEEYIKALSEAVHSVGGLLVIDCIAS 178 (379)
T ss_dssp EEEEECEESSCCSSCCCEECCCHHHHHHHHHH--HTCSEEEEESEETTTTEEC-CHHHHHHHHHHHHHTTCEEEEECTTC
T ss_pred eEEEeccccccccccCCCCCCCHHHHHHHHhh--cCCcEEEEEeecCCCceeC-CHHHHHHHHHHHHHcCCEEEEEeccc
Confidence 888887432 36899999999962 36778888875 5689998 8 9999999999999999999985
Q ss_pred ccccCCCCCCccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCC-CccccCCCCCCC-----CCCCCCCCCCC
Q 001989 771 NAQVGLTSPGYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPS-HPVVSTGGIPAP-----EKSQPLGTIAA 844 (985)
Q Consensus 771 ~~~~~l~~pg~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~-~~~g~~~~~~~~-----~~~~~~~~i~s 844 (985)
+.. ......+++|++++++||+|+ |++|+|++++++++.+.+.. ...+...+...+ ..+.+......
T Consensus 179 -g~~-~~~~~~~~~d~~~~s~~K~l~-----~~~g~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 251 (379)
T 3ke3_A 179 -GCV-WLDMKELGIDVLISAPQKGWS-----STPCAGLVMLSAAAIKKVESTESNCFSLDLKQWLTIMRAYENGGHAYHA 251 (379)
T ss_dssp -TTC-CCCHHHHTCSEEEECTTTTTC-----SCCCEEEEEECHHHHHHHHTCCCSCSTTCHHHHHHHHHHHHTTSCCCSS
T ss_pred -CCc-cccccccCCCEEEecchhhcC-----CCCceEEEEECHHHHHhhhcCCCCceeecHHHHHHHHHhhhccCCCCCC
Confidence 321 123345689999999999984 34589999999876543321 100000000000 00000000000
Q ss_pred cchhhhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceee-EEEEEecCccccCCCCHHH
Q 001989 845 APWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAH-EFIVDLRGLKNTAGIEPED 922 (985)
Q Consensus 845 ~~~g~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~-~~iv~~~~~~~~~g~~~~~ 922 (985)
++ +...+.+..+.+..+..+|+.++.++..+++++++++|++ ++++... + ..... .+.+..+ + ....
T Consensus 252 t~--~~~~~~a~~aal~~~~~~g~~~~~~~~~~l~~~l~~~l~~~g~~~~~~-~-~~~~~~i~~~~~~------~-~~~~ 320 (379)
T 3ke3_A 252 TM--PTDSLRQFRDAILEAKEIGFDILRDAQWELGNRVRKVLTDKGIESVAA-E-GFEAPGVVVSYTE------R-DDMH 320 (379)
T ss_dssp CC--CHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCBSBC-T-TCBCSSEEEEECS------C-HHHH
T ss_pred CC--CHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHcCCEecCC-c-cccCceEEEEccC------C-cchH
Confidence 00 1122223335566666778888888899999999999987 5665322 1 11111 1222222 1 1122
Q ss_pred HHHHHHHCCCccCCCCC-----CC-CCEEEEeccCCCCHHHHHHHHccCChhHHHHhhcc
Q 001989 923 VAKRLMDYGFHGPTMSW-----PV-PGTLMIEPTESESKSWTGIVMLSSPSEKKLHRLKM 976 (985)
Q Consensus 923 v~~~L~~~Gi~~~~~~~-----p~-~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~~~ 976 (985)
+.+.|.++||.+..... |. .+.+||+++.++|++|||+ +++.|+++++++.+
T Consensus 321 ~~~~L~~~Gi~v~~g~~~~~~~~~~~~~lRis~~~~~t~~di~~--~~~~l~~~l~~~~~ 378 (379)
T 3ke3_A 321 KGSAFAEAGLQIAAGVPLKVGEPDNFKTFRLGLFGLDKLTDIDG--TVERFEKALDEVLA 378 (379)
T ss_dssp SSHHHHHTTCCCEECCCCSSCCCTTCCEEEEECCSHHHHTCHHH--HHHHHHHHHHHHHC
T ss_pred HHHHHHHCCeEEeCCccccccccCcCCEEEEeCCcCCCHHHHHH--HHHHHHHHHHHhcc
Confidence 36788999998653221 21 5789999999999999999 88999999887753
|
| >3e77_A Phosphoserine aminotransferase; SERC, PLP, structural genomi structural genomics consortium, SGC, amino-acid biosynthesi aminotransferase; HET: PLP; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.87 E-value=5.4e-21 Score=217.29 Aligned_cols=315 Identities=11% Similarity=0.062 Sum_probs=219.0
Q ss_pred CCcHHHHHHHHhCCcccccc--CCCh----hhHhhhHHHHHHHHHHHHHHhcCCCC-cceee-ccchHHHHHHHHHHhhh
Q 001989 179 HVPPVILRNIMENPAWYTQY--TPYQ----AEIAQGRLESLLNFQTMIADLTGLPM-SNASL-LDEGTAAAEAMAMCNNI 250 (985)
Q Consensus 179 ~~p~~v~~~i~~~~~~~t~~--~pyq----~e~sqg~l~~i~e~q~~ia~L~g~~~-~~~sl-~~~~ta~~ea~~~a~~~ 250 (985)
.+|+.|.+++..- +..| +|-. ...++...+.+.++++.+++|+|++. .++.+ +.|+|.++++++..+.
T Consensus 23 ~~p~~Vl~a~~~~---~~~~~~n~~s~~~~~hr~~~~~~~~~~ar~~la~ll~~~~~~evif~t~~~T~a~n~a~~~l~- 98 (377)
T 3e77_A 23 MLPHSVLLEIQKE---LLDYKGVGISVLEMSHRSSDFAKIINNTENLVRELLAVPDNYKVIFLQGGGCGQFSAVPLNLI- 98 (377)
T ss_dssp CCCHHHHHHHHHT---SSSGGGSSSCTTTCCTTSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHHHG-
T ss_pred CCCHHHHHHHHHH---HHhcccCCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCCeEEEEcCchHHHHHHHHHhcc-
Confidence 4888887665542 3222 1111 11245567899999999999999975 45777 4788988887776543
Q ss_pred hcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc--------hhhhc-cCCCEeEEEEEc-CCCCeeeccHHHHHH
Q 001989 251 QKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL--------KDIDY-KSGDVCGVLVQY-PGTEGEVLDYGDFIK 320 (985)
Q Consensus 251 ~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~--------~~l~~-l~~~t~~V~v~~-pn~~G~v~di~~I~~ 320 (985)
..++||+|++....|.+. .|...++..|+++++++. ++++. ++++|++|++++ .|.+|++.|+
T Consensus 99 ~~~~Gd~v~~~~~g~~~~--~~~~~a~~~G~~~~~~~~~~~~~~~~~~~~~~i~~~t~lV~~~h~et~tG~~~pi----- 171 (377)
T 3e77_A 99 GLKAGRCADYVVTGAWSA--KAAEEAKKFGTINIVHPKLGSYTKIPDPSTWNLNPDASYVYYCANETVHGVEFDF----- 171 (377)
T ss_dssp GGSTTCEEEECCCSHHHH--HHHHHHTTTSEEEECSCCCSSSCSCCCGGGCCCCTTCSCEEEESEETTTTEECSS-----
T ss_pred CCCCCCeEEEEECCHHHH--HHHHHHHHhCCceEEeccCCCcCCCCChHHhccCCCccEEEEeCccCchheEchh-----
Confidence 212489998888777654 455567788988887654 34444 788999998886 4889999999
Q ss_pred HHHhCCcEEEEEecCccccCC-CCCCcccceEEEecCccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcc
Q 001989 321 NAHANGVKVVMATDLLALTIL-KPPGELGADIVVGSAQRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPA 399 (985)
Q Consensus 321 ~a~~~galliV~a~~~~lg~l-~~~~~~GaDi~v~s~k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~ 399 (985)
+++++|++++||+ ..++|.+ .+..+|| ++++++||+.+| ||+|++++++++++++++...+
T Consensus 172 i~~~~~~~~~vD~-~q~~g~~~id~~~~~--~~~~s~~K~~gp-----~G~g~l~~~~~~l~~~~~~~p~---------- 233 (377)
T 3e77_A 172 IPDVKGAVLVCDM-SSNFLSKPVDVSKFG--VIFAGAQKNVGS-----AGVTVVIVRDDLLGFALRECPS---------- 233 (377)
T ss_dssp CCCCTTCCEEEEC-TTTTTSSCCCGGGCS--EEEEEGGGTTSC-----TTCEEEEEETTSCSCCCTTSCG----------
T ss_pred hhccCCCEEEEEc-ccccCCCCCchhhcC--EEEEecccccCC-----CccEEEEEcHHHHhhccCCCCc----------
Confidence 4678999999964 4466654 3446777 467888555234 6789999999988777543211
Q ss_pred eeeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcc-hHHHHHHHHHHHHHHHHHHHhcCCCeEEcC-C--CCc
Q 001989 400 LRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPE-GLKTIAQRVHGLAGTFALGLKKLGTVEVQG-L--PFF 475 (985)
Q Consensus 400 ~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~-Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~-~--~~~ 475 (985)
| +++....+ .....+|+|+ .+++++.+++ .++..+ |++++.++..+++++++++|++++|+.+.. + ...
T Consensus 234 ~-~~~~~~~~-~~~~~~Tp~v---~~i~~l~~al--~~l~~~GG~~~i~~~~~~l~~~l~~~L~~~~g~~~~~~~~~~rs 306 (377)
T 3e77_A 234 V-LEYKVQAG-NSSLYNTPPC---FSIYVMGLVL--EWIKNNGGAAAMEKLSSIKSQTIYEIIDNSQGFYVCPVEPQNRS 306 (377)
T ss_dssp G-GCHHHHHT-TTTCSSCCCH---HHHHHHHHHH--HHHHHTTHHHHHHHHHHHHHHHHHHHHHTSTTSEECCSCGGGBC
T ss_pred h-hhHHHHhh-cCCCCCCchH---HHHHHHHHHH--HHHHHccCHHHHHHHHHHHHHHHHHHHHhcCCceecCCCHHHcC
Confidence 1 11111101 1123467777 6777888877 566667 899999999999999999999984488642 2 122
Q ss_pred c-eEEEecCC--H-----HHHHHHHHHcCceeeee--cCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 476 D-TVKVKCAD--A-----HAIASAAYKIEMNLRVV--DSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 476 ~-~~~~~~~~--~-----~~v~~~L~~~GI~~~~~--~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
. .++|++++ + ..+.+.|.++||.+..- ..+.+|+|+..++|+||||+|+++|++
T Consensus 307 ~~ivsf~~~~~~~~~~~~~~~l~~l~~~Gi~~~~g~~~~g~iRiS~~~~~t~edId~l~~al~~ 370 (377)
T 3e77_A 307 KMNIPFRIGNAKGDDALEKRFLDKALELNMLSLKGHRSVGGIRASLYNAVTIEDVQKLAAFMKK 370 (377)
T ss_dssp SSEEEEEESSTTCCHHHHHHHHHHHHHTTEESCBCCTTTCSEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCchhHHHHHHHHHHHCCcEEeCCCCcCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3 36677664 2 35677777899987432 236799999999999999999999974
|
| >3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.87 E-value=2.3e-20 Score=215.26 Aligned_cols=331 Identities=13% Similarity=0.096 Sum_probs=222.7
Q ss_pred cCCCCCCCCCcHHHHHHHHhCCccccccCCChhhHhhhHHHHHHHHHHHHHHhcCCCCccee-eccchHHHHHHHHHHhh
Q 001989 171 IGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMSNAS-LLDEGTAAAEAMAMCNN 249 (985)
Q Consensus 171 lG~g~y~~~~p~~v~~~i~~~~~~~t~~~pyq~e~sqg~l~~i~e~q~~ia~L~g~~~~~~s-l~~~~ta~~ea~~~a~~ 249 (985)
++.| |..+|+.+.+. +.+..+ ..|.+. ..+...++++++++++|.+.+++. +..++|.++++++.++
T Consensus 15 ~~p~--p~~~~~~v~~a-~~~~~~----~~~~~~----~~~~~~~l~~~la~~~g~~~~~~~~~~~s~t~al~~~~~~l- 82 (416)
T 3isl_A 15 MTPG--PVEVDPRVLRV-MSTPVV----GQFDPA----FTGIMNETMEMLRELFQTKNRWAYPIDGTSRAGIEAVLASV- 82 (416)
T ss_dssp CSSS--SCCCCHHHHHH-TTSCCC----CTTSHH----HHHHHHHHHHHHHHHTTCCCSEEEEEESCHHHHHHHHHHHH-
T ss_pred ecCC--CcCcCHHHHHH-hcccCC----CCccHH----HHHHHHHHHHHHHHHhCCCCCcEEEecCcHHHHHHHHHHHh-
Confidence 4444 55677777644 333221 122222 246677899999999999887665 6678888888777665
Q ss_pred hhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc--------hhhhc-cC-CCEeEEEEEcC-CCCeeeccHHHH
Q 001989 250 IQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL--------KDIDY-KS-GDVCGVLVQYP-GTEGEVLDYGDF 318 (985)
Q Consensus 250 ~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~--------~~l~~-l~-~~t~~V~v~~p-n~~G~v~di~~I 318 (985)
+ ++||+|+++...|+++. +...++..|++++.++. ++|++ ++ +++++|++.+| |.+|.+.|+++|
T Consensus 83 ~--~~gd~Vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l~~i 158 (416)
T 3isl_A 83 I--EPEDDVLIPIYGRFGYL--LTEIAERYGANVHMLECEWGTVFDPEDIIREIKKVKPKIVAMVHGETSTGRIHPLKAI 158 (416)
T ss_dssp C--CTTCEEEEEESSHHHHH--HHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCHHH
T ss_pred c--CCCCEEEEecCCcccHH--HHHHHHhcCCeeEEEecCCCCCCCHHHHHHHHhhCCCcEEEEEccCCCCceecCHHHH
Confidence 3 38999999999998732 22223456888888754 34555 65 58899999987 889999999999
Q ss_pred HHHHHhCCcEEEEEecCccccCCC-CCCcccceEEEecC-ccccccCCCCCCcEEEEEEchhhHhcCCCc---eeeeeec
Q 001989 319 IKNAHANGVKVVMATDLLALTILK-PPGELGADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGR---IVGVSID 393 (985)
Q Consensus 319 ~~~a~~~galliV~a~~~~lg~l~-~~~~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~---~vG~t~d 393 (985)
.++||++|+++++| ..++.+.+. +..++|+|+++++. |+++ |++|+|++++++++.+.+... .+||...
T Consensus 159 ~~l~~~~~~~li~D-~a~~~~~~~~~~~~~~~d~~~~s~~K~l~-----g~~g~g~~~~~~~~~~~~~~~~~~~~Gw~~~ 232 (416)
T 3isl_A 159 GEACRTEDALFIVD-AVATIGGCEVKVDEWKIDAAIGGTQKCLS-----VPSGMAPITYNERVADVIAARKKVERGIATQ 232 (416)
T ss_dssp HHHHHHTTCEEEEE-CTTTTTTSCCCTTTTTCSEEECCSSSTTC-----CCSSEEEEEECHHHHHHHHTC----------
T ss_pred HHHHHHcCCEEEEE-CCccccCCCcchhhcCCCEEEecCccccC-----CCCCeEEEEECHHHHHHhhcccccccccccc
Confidence 99999999999995 345555442 34678999999998 6564 345689999999888776432 2444210
Q ss_pred C------CC--Ccceeeeccc-c--cccccccccCCCccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHh
Q 001989 394 S------SG--KPALRVAMQT-R--EQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLK 462 (985)
Q Consensus 394 ~------~g--~~~~~l~l~t-r--e~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~ 462 (985)
. .| ...+.++... + .+..+.+.+|.|+ ....++.+++ ..+...|++++.++..++++++.+.|+
T Consensus 233 ~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~a~~~al--~~~~~~g~~~~~~~~~~~~~~l~~~L~ 307 (416)
T 3isl_A 233 ADRAALSGNRPITSNYFDLSQLEDYWSERRLNHHTEAT---TMLYALREGV--RLVLEEGLETRFERHRHHEAALAAGIK 307 (416)
T ss_dssp --------CCCCSCSTTCHHHHHHHTSTTCCCSSCCCH---HHHHHHHHHH--HHHHHHCHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhccCCCCCCccccchHHHHhhhcccCCCCCCCCH---HHHHHHHHHH--HHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 0 00 0111111100 0 0122233455554 3344444443 455556799999999999999999999
Q ss_pred cCCCeEEcCCC--C-cceEEEecC-C--HHHHHHHHHHc-Cceeee----ecCCeEEEEeccCCCHHH-HHHHHHHHhC
Q 001989 463 KLGTVEVQGLP--F-FDTVKVKCA-D--AHAIASAAYKI-EMNLRV----VDSNTVTASFDETTTLED-VDKLFIVFAG 529 (985)
Q Consensus 463 ~~g~~~~~~~~--~-~~~~~~~~~-~--~~~v~~~L~~~-GI~~~~----~~~~~lris~t~~~t~ed-Id~li~aL~~ 529 (985)
+.| +++..+. . ...+.+..+ + ..++.+.|.++ ||.++. ..++.+|++++.++|.+| +++++++|++
T Consensus 308 ~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gi~v~~g~~~~~~~~iRi~~~~~~~~~e~i~~~~~~l~~ 385 (416)
T 3isl_A 308 AMG-LRLFGDDSCKMPVVTCVEIPGGIDGESVRDMLLAQFGIEIASSFGPLAGKIWRIGTMGYSCRKENVLFVLAGLEA 385 (416)
T ss_dssp HTT-CCBCSCGGGBCTTEEEEECCTTCCHHHHHHHHHHHHCEECBCCCSTTTTTEEEEECCGGGCSHHHHHHHHHHHHH
T ss_pred HcC-CEeccCccccCCcEEEEeCCCCCCHHHHHHHHHHhCCEEEecCCCCCCCCEEEEecccCCCcHHHHHHHHHHHHH
Confidence 986 8876432 1 234556664 2 88999999887 998864 235789999988877777 9999999974
|
| >3vax_A Putative uncharacterized protein DNDA; desulfurase, transferase; HET: PLP; 2.40A {Streptomyces lividans} | Back alignment and structure |
|---|
Probab=99.87 E-value=7.1e-21 Score=218.48 Aligned_cols=308 Identities=11% Similarity=0.041 Sum_probs=188.0
Q ss_pred hhHHHHHHHHHHHHHHHhCCCccc-eecCcHHHHHHHHHHHHHHHHHhcCCCCCC-EEEEcCCCCcccHHHHH---HCCc
Q 001989 628 QGYQEMFNNLGEWLCTITGFDSFS-LQPNAGAAGEYAGLMVIRAYHKARGDHHRN-VCIIPVSAHGTNPATAA---MCGM 702 (985)
Q Consensus 628 ~G~~~~~~e~~~~la~l~G~~~~~-~~~~sGa~a~~a~l~air~~~~~~g~~~~~-~IIv~~~~Hg~~~~~a~---~~G~ 702 (985)
.+..+..+++++++++++|.+... ++.++|++|+..++.++..+.. .++| +||++...|+++..... ..|+
T Consensus 59 ~~~~~~~~~l~~~la~~~~~~~~~v~~~~g~t~al~~~~~~l~~~~~----~~gd~~Vl~~~~~~~~~~~~~~~~~~~g~ 134 (400)
T 3vax_A 59 IRAKRGVERAREYLASTVSAEPDELIFTSGATESNNIALLGLAPYGE----RTGRRHIITSAIEHKAVLEPLEHLAGRGF 134 (400)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCGGGEEEESCHHHHHHHHHHTTHHHHH----HHTCCEEEEETTSCHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCcEEEeCCHHHHHHHHHHHHHHhhc----cCCCCEEEECccccHhHHHHHHHHHhcCC
Confidence 345567889999999999998644 5566777777666655532211 2568 99999887877655433 3699
Q ss_pred EEEEEcCCCCCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCc
Q 001989 703 KIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGY 781 (985)
Q Consensus 703 ~vv~v~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~ 781 (985)
+++.+|+++++.+|+++|+++++ +++++|++++| |++|.+. |+++|.++|+++|+++++|++|..+.... ....
T Consensus 135 ~~~~v~~~~~~~~d~~~l~~~i~---~~~~~v~~~~~~nptG~~~-~l~~i~~la~~~~~~li~D~a~~~~~~~~-~~~~ 209 (400)
T 3vax_A 135 EVDFLTPGPSGRISVEGVMERLR---PDTLLVSLMHVNNETGVIQ-PVAELAQQLRATPTYLHVDAAQGYGKVPG-DLTT 209 (400)
T ss_dssp EEEEECCCTTCCCCHHHHHTTCC---TTEEEEECCSBCTTTCBBC-CHHHHHHHHTTSSCEEEEECTTTTTTSGG-GGGS
T ss_pred eEEEEccCCCCCcCHHHHHHhcC---CCceEEEEECCCCCceeeC-cHHHHHHHHHhcCCEEEEEhhhhcCCCCc-Chhh
Confidence 99999998899999999999997 78999999998 4699998 89999999999999999999986332221 1223
Q ss_pred cCCcEEEeCCcccccccCCCCCCceEEEE-Eccc-cc---CcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHH
Q 001989 782 IGADVCHLNLHKTFCIPHGGGGPGMGPIG-VKKH-LA---PFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPIS 856 (985)
Q Consensus 782 ~g~Di~~~s~hK~l~~p~g~GGPg~G~i~-~~~~-l~---~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a 856 (985)
+ +|++++|+||++ |++|+|+++ ++++ +. ..+.....+.... .....++.+ ...+.+.
T Consensus 210 ~-~d~~~~s~~K~~------g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~--------~~~~~a~ 271 (400)
T 3vax_A 210 P-IDMISISGHKIG------APKGVGALVTRRREEMDDERVPLEPIMFGGGQE---RKLRPGTLP--------VPLIMGL 271 (400)
T ss_dssp C-CSEEEEETGGGT------SCSSCEEEEECBCSSSTTCBCCCCCSSCSSCTG---GGTSCSCCC--------HHHHHHH
T ss_pred c-CcEEEEeHHHhC------CCCceEEEEEecchhccccccccCceecCCCce---eeeecCCCC--------HHHHHHH
Confidence 4 899999999954 334688888 8762 22 1222211111000 000001111 1111112
Q ss_pred HHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhccCCeeecCCCCc-eeeEEEEEecCccccCCCCHHHHHHHHHHCCCccC
Q 001989 857 YTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGT-VAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGP 935 (985)
Q Consensus 857 ~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~g~~l~~~~~~~~-~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~ 935 (985)
.+.+..+ .+++++..++..++++++.+.|+ ..++....+... ..+.+.+.++ +.+..++.+.|. +||.+.
T Consensus 272 ~~al~~~-~~~~~~~~~~~~~~~~~l~~~L~-~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~l~~~L~-~gi~v~ 342 (400)
T 3vax_A 272 AEAAKIF-EAEHAQWQVAAQDLRSRLLAGLA-STSFQVNGDQDHVVPHILNLSFE------DVDAEAFLVTLK-DLVAVA 342 (400)
T ss_dssp HHHHHHH-HHSHHHHHHHHHHHHHHHHHHHT-TTTCEECSCTTSBCTTEEEEECT------TCCHHHHHHHHH-HHHHHT
T ss_pred HHHHHHH-HhhHHHHHHHHHHHHHHHHHhhC-CCCEEEeCCcccCCCCEEEEEeC------CCCHHHHHHHHh-cCcEEE
Confidence 2333333 34567777888899999999997 323322222111 1122444443 467889999999 999764
Q ss_pred CCC---------------CCC-----CCEEEEec-cCCCCHHHHHHHHccCChhHHHHh
Q 001989 936 TMS---------------WPV-----PGTLMIEP-TESESKSWTGIVMLSSPSEKKLHR 973 (985)
Q Consensus 936 ~~~---------------~p~-----~~~lris~-t~~~t~eeId~~~~~~~l~~~~~~ 973 (985)
.-. ++. .+.+||++ +..+|++|+++ +++.|++++++
T Consensus 343 ~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRls~~~~~~t~e~i~~--~~~~l~~~~~~ 399 (400)
T 3vax_A 343 TGSASTSASFTPSHVLRAMGLPEEAASKSLRFSWTPGQATDLDVEE--LARGVAKLKPS 399 (400)
T ss_dssp TTTEEEEEEECCHHHHHTTTCCHHHHTSEEEEEEEEC----------------------
T ss_pred ecccccCCCCCccHHHHHcCCCccccCceEEEEccCCCCCHHHHHH--HHHHHHHHhcc
Confidence 311 111 38999999 99999999999 88888887653
|
| >3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=3.4e-20 Score=211.13 Aligned_cols=321 Identities=13% Similarity=0.090 Sum_probs=223.6
Q ss_pred cCCCCCCCCCcHHHHHHHHhCCccccccCCChhhHhhhHHHHHHHHHHHHHHhcCCCC--cceeeccchHHHHHHHHHHh
Q 001989 171 IGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPM--SNASLLDEGTAAAEAMAMCN 248 (985)
Q Consensus 171 lG~g~y~~~~p~~v~~~i~~~~~~~t~~~pyq~e~sqg~l~~i~e~q~~ia~L~g~~~--~~~sl~~~~ta~~ea~~~a~ 248 (985)
++.| |..+|+.+.+++... +..+ + +....+.+.++++.+++++|.+. .++.+++|+|.+++ ++.++
T Consensus 6 ~~~g--p~~~~~~v~~a~~~~---~~~~--~----~~~~~~~~~~~~~~la~~~~~~~~~~~v~~~~g~t~al~-~~~~~ 73 (384)
T 3zrp_A 6 LHVG--PTTIKEDVLVAGLEN---NVGF--T----SKEFVEALAYSLKGLRYVMGASKNYQPLIIPGGGTSAME-SVTSL 73 (384)
T ss_dssp CCSS--CSCCCHHHHHHTTCC---SCCT--T----SHHHHHHHHHHHHHHHHHHTCCTTSEEEEEESCHHHHHH-HGGGG
T ss_pred ccCC--CCCCCHHHHHHhhcc---cccc--c----cHHHHHHHHHHHHHHHHHhCCCCCCcEEEEcCCcHHHHH-HHHhh
Confidence 3445 345777776554432 2211 1 12235677889999999999988 78989999998877 55433
Q ss_pred hhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc--------hhhhc-cCC-CEeEEEEEcC-CCCeeeccHHH
Q 001989 249 NIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL--------KDIDY-KSG-DVCGVLVQYP-GTEGEVLDYGD 317 (985)
Q Consensus 249 ~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~--------~~l~~-l~~-~t~~V~v~~p-n~~G~v~di~~ 317 (985)
+ ++||+|++++..|++. .+..+++..|++++.++. +++++ +++ ++++|++.+| |.+|.+.|+++
T Consensus 74 -~--~~gd~vi~~~~~~~~~--~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l~~ 148 (384)
T 3zrp_A 74 -L--KPNDKILVVSNGVFGD--RWEQIFKRYPVNVKVLRPSPGDYVKPGEVEEEVRKSEYKLVALTHVETSTGVREPVKD 148 (384)
T ss_dssp -C--CTTCEEEEECSSHHHH--HHHHHHTTSSCEEEEECCSTTCCCCHHHHHHHHHHSCEEEEEEESEETTTTEECCHHH
T ss_pred -c--CCCCEEEEecCCcchH--HHHHHHHHcCCcEEEecCCCCCCCCHHHHHHHHHhCCCcEEEEeCCCCCCceECcHHH
Confidence 2 3899999999988763 333445667999988865 34555 555 7999999987 88999999999
Q ss_pred HHHHHHhCCcEEEEEecCccccCCC-CCCcccceEEEecC-ccccccCCCCCCcEEEEEEchhhHhcC-CCceeeeeecC
Q 001989 318 FIKNAHANGVKVVMATDLLALTILK-PPGELGADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMM-PGRIVGVSIDS 394 (985)
Q Consensus 318 I~~~a~~~galliV~a~~~~lg~l~-~~~~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~l-p~~~vG~t~d~ 394 (985)
|.++|+++|+++++| +.++.+... ...++|+|+++++. |+|+ |++|+|++++++++++.+ .+..
T Consensus 149 i~~l~~~~~~~li~D-~a~~~~~~~~~~~~~~~d~~~~s~~K~~~-----~~~g~g~~~~~~~~~~~~~~~~~------- 215 (384)
T 3zrp_A 149 VINKIRKYVELIVVD-GVSSVGAEEVKAEEWNVDVYLTASQKALG-----SAAGLGLLLLSPKALSILDSQNS------- 215 (384)
T ss_dssp HHHHHGGGEEEEEEE-CTTTTTTSCCCTTTTTCSEEEEETTSTTC-----CCSSEEEEEECHHHHHHHHHCCC-------
T ss_pred HHHHHHhcCCEEEEE-CcccccCccccccccCCCEEEecCccccc-----CCCceEEEEECHHHHHHhcCCCC-------
Confidence 999999999999995 345555442 34568999999998 7674 345689999999887766 3210
Q ss_pred CCCcceeeeccccccc-cccc------ccCCCccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCe
Q 001989 395 SGKPALRVAMQTREQH-IRRD------KATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTV 467 (985)
Q Consensus 395 ~g~~~~~l~l~tre~~-irre------~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~ 467 (985)
..++.+++...... .+++ .||.|+ ....++.+++ .++..+|++++.++..++++++.+.|+++| +
T Consensus 216 --~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~---~~~~a~~~al--~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~ 287 (384)
T 3zrp_A 216 --IAGYYLDLRNWLPVMRGAEEGKAAYFATPPV---HVILQLAEAF--RLIEKEGIENRIKRHTMVASAIRAGLEALG-L 287 (384)
T ss_dssp --SCCSTTCHHHHHHHHHHHHTTCCCCSSCCCH---HHHHHHHHHH--HHHHHHCHHHHHHHHHHHHHHHHHHHHHTT-C
T ss_pred --CCcccccHHHHHHHHHhhcccCCCcCCCCCH---HHHHHHHHHH--HHHHhcCHHHHHHHHHHHHHHHHHHHHHCC-C
Confidence 11122221110000 1111 134444 3343444443 455566899999999999999999999996 8
Q ss_pred EEcCCC----CcceEEEecCC--HHHHHHHHHHcCceeeeec---CCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 468 EVQGLP----FFDTVKVKCAD--AHAIASAAYKIEMNLRVVD---SNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 468 ~~~~~~----~~~~~~~~~~~--~~~v~~~L~~~GI~~~~~~---~~~lris~t~~~t~edId~li~aL~~ 529 (985)
++..+. ....+.+..++ ..++.+.|.++||.++... .+.+|++++.++|++|+|+++++|.+
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~iRi~~~~~~~~e~i~~~~~~l~~ 358 (384)
T 3zrp_A 288 EIVARRPESYSNTVTGVILKVADPQKVLAGTVNEGVEFAPGVHPAFKYFRIGHMGWVTPNDAIIAISVIER 358 (384)
T ss_dssp CBSCSSGGGBCSSEEEEECSSSCHHHHHHHHHTTTCCCEECCCTTCCEEEEECCSSCCHHHHHHHHHHHHH
T ss_pred eEccCcccccCccEEEEECCCCCHHHHHHHHHHCCEEEecCCCCCcCEEEEeccccCCHHHHHHHHHHHHH
Confidence 876432 12334566664 8899999999999886422 16799999999999999999999974
|
| >4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=1.7e-19 Score=205.36 Aligned_cols=291 Identities=16% Similarity=0.126 Sum_probs=209.4
Q ss_pred hhhHHHHHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhh-hhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEE
Q 001989 206 AQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNN-IQKGKKKTFIIASNCHPQTIDICITRADGFDIKVV 284 (985)
Q Consensus 206 sqg~l~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~-~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~ 284 (985)
+.+..+.+.++++.+++++|.++.++.+++|+|.+++.++.++. ...++||+|++++..|+++...++.. +..|++++
T Consensus 38 ~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a~~~~~~~l~~~~~~~gd~Vl~~~~~~~~~~~~~~~~-~~~g~~~~ 116 (382)
T 4eb5_A 38 GFKAREAVQEAREKVAKLVNGGGGTVVFTSGATEANNLAIIGYAMRNARKGKHILVSAVEHMSVINPAKFL-QKQGFEVE 116 (382)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCTTEEEEEESSHHHHHHHHHHHHHHHHGGGCCEEEEETTCCHHHHHHHHHH-TTTTCEEE
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCeEEEcCchHHHHHHHHHHHHhhccCCCCEEEECCCcchHHHHHHHHH-HhCCcEEE
Confidence 45567788899999999999987788899999998888776653 10127899999999999999888653 34788988
Q ss_pred EeCc--------hhhhc-cCCCEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCC-CCCcccceEEE
Q 001989 285 VSDL--------KDIDY-KSGDVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILK-PPGELGADIVV 353 (985)
Q Consensus 285 ~v~~--------~~l~~-l~~~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~-~~~~~GaDi~v 353 (985)
.++. ++|++ +++++++|++++| |.+|.+.|+++|.++|+++|++ ++| +.+++|... +...+|+|+++
T Consensus 117 ~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~-i~D-~a~~~g~~~~~~~~~~~di~~ 194 (382)
T 4eb5_A 117 YIPVGKYGEVDVSFIDQKLRDDTILVSVQHANNEIGTIQPVEEISEVLAGKAAL-HID-ATASVGQIEVDVEKIGADMLT 194 (382)
T ss_dssp EECBCTTSCBCHHHHHHHCCTTEEEEECCSBCTTTCBBCCHHHHHHHHTTSSEE-EEE-CTTTBTTBCCCHHHHTCSEEE
T ss_pred EeccCCCCccCHHHHHHHhcCCCeEEEEeccCCCccccCCHHHHHHHHHHCCCE-EEE-cchhcCCcccCccccCCCEEE
Confidence 8764 45666 7788999988887 7899999999999999999999 885 345555332 22346899999
Q ss_pred ecCccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHH
Q 001989 354 GSAQRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAM 433 (985)
Q Consensus 354 ~s~k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~ 433 (985)
+|.+|+.+| +|+|+++++++. .+...+.|+ . +..+...+|.|. ....++.+++
T Consensus 195 ~s~sK~~g~-----~g~G~~~~~~~~--~l~~~~~~~------~-----------~~~~~~~~~~~~---~~~~~~~~al 247 (382)
T 4eb5_A 195 ISSNDIYGP-----KGVGALWIRKEA--KLQPVILGG------G-----------QENGLRSGSENV---PSIVGFGKAA 247 (382)
T ss_dssp EETGGGTCC-----SSCEEEEEETTC--CCCCSSCSS------C-----------TGGGTSCSCCCH---HHHHHHHHHH
T ss_pred eehHHhcCC-----CceEEEEEcccc--ccCceecCC------C-----------ccccccCCCccH---HHHHHHHHHH
Confidence 998334323 357889888763 222111110 0 011123345444 2333444443
Q ss_pred HHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCC---CcceEEEecCC--HHHHHHHHHHcCceeeee------
Q 001989 434 YAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLP---FFDTVKVKCAD--AHAIASAAYKIEMNLRVV------ 502 (985)
Q Consensus 434 ~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~---~~~~~~~~~~~--~~~v~~~L~~~GI~~~~~------ 502 (985)
.++ .++++++.++..++++++.+.|+++.++++..++ ..+.+.+..++ ..++.+.|.++||.+...
T Consensus 248 --~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~ 324 (382)
T 4eb5_A 248 --EIT-AMEWREEAERLRRLRDRIIDNVLKIEESYLNGHPEKRLPNNVNVRFSYIEGESIVLSLDMAGIQASTGSACSSK 324 (382)
T ss_dssp --HHH-HHHHHHHHHHHHHHHHHHHHHHTTSTTEEECSCSSSBCTTEEEEEETTSCHHHHHHHHHHHTCBCBCCCGGGTS
T ss_pred --HHH-HHhHHHHHHHHHHHHHHHHHHHhhCCCeEEeCCcccCCCCEEEEEeCCcCHHHHHHHHHHCCEEEeccccccCC
Confidence 222 3478899999999999999999998338887432 12345566554 788999999999987542
Q ss_pred -----------------cCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 503 -----------------DSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 503 -----------------~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
..+.+|++++..+|++|+++++++|.+
T Consensus 325 ~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~ 368 (382)
T 4eb5_A 325 TLQPSHVLMACGLKHEEAHGTLLLTLGRYNTDEDVDRLLEVLPG 368 (382)
T ss_dssp SCCCCHHHHHTTCCHHHHTTEEEEECCTTCCHHHHHHHHHHHHH
T ss_pred CCcccHHHHHcCCChhccCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 146899999999999999999999974
|
| >3ke3_A Putative serine-pyruvate aminotransferase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP; 2.20A {Psychrobacter arcticus 273-4} | Back alignment and structure |
|---|
Probab=99.86 E-value=5.6e-21 Score=218.62 Aligned_cols=292 Identities=14% Similarity=0.080 Sum_probs=202.0
Q ss_pred HHHHHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhc--CCCeEEEEe
Q 001989 209 RLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRAD--GFDIKVVVS 286 (985)
Q Consensus 209 ~l~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~--~~gi~v~~v 286 (985)
..+.+.++++.+++++|.+ ..+.++.|||+++++++..+ . +||+||+++..|++... ..+++ +.+.+++.+
T Consensus 33 ~~~~~~~~~~~l~~~~~~~-~~v~~~~sgt~a~~~~~~~~--~--~gd~vi~~~~~~~~~~~--~~~~~~~g~~~~~~~~ 105 (379)
T 3ke3_A 33 FQEVMNDLLSNLKTVYNAE-AAVIIPGSGTYGMEAVARQL--T--IDEDCLIIRNGWFSYRW--TQILEKGKFAKSSTVL 105 (379)
T ss_dssp HHHHHHHHHHHHHHHHTCS-EEEEEESCHHHHHHHHHHHH--C--TTCEEEEEECSHHHHHH--HHHHHHHCCSSEEEEE
T ss_pred HHHHHHHHHHHHHHHhCCC-CEEEEcCChhHHHHHHHHhC--C--CCCeEEEEeCCchhHHH--HHHHHHhCCCCceEEE
Confidence 3478888999999999988 45667789999888865332 3 88999999988876532 11222 223455444
Q ss_pred -----------------Cchhhhc-cC-CCEeEEEEEcC-CCCeeecc---HHHHHHHHHhCCcEEEEEecCccccCC-C
Q 001989 287 -----------------DLKDIDY-KS-GDVCGVLVQYP-GTEGEVLD---YGDFIKNAHANGVKVVMATDLLALTIL-K 342 (985)
Q Consensus 287 -----------------~~~~l~~-l~-~~t~~V~v~~p-n~~G~v~d---i~~I~~~a~~~galliV~a~~~~lg~l-~ 342 (985)
+++++++ +. +++++|++.++ |.+|.+.| +++|+++||++|+++++|. ..+ |.. .
T Consensus 106 ~~~~~g~~~~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~~~~G~~~~~~~l~~i~~~~~~~~~~li~D~-~~~-g~~~~ 183 (379)
T 3ke3_A 106 TAERTEDTEAPKPFAPVDIETAVAKIKEDKSAIVYAPHVETSSGIILSEEYIKALSEAVHSVGGLLVIDC-IAS-GCVWL 183 (379)
T ss_dssp ECEESSCCSSCCCEECCCHHHHHHHHHHHTCSEEEEESEETTTTEECCHHHHHHHHHHHHHTTCEEEEEC-TTC-TTCCC
T ss_pred eccccccccccCCCCCCCHHHHHHHHhhcCCcEEEEEeecCCCceeCCHHHHHHHHHHHHHcCCEEEEEe-ccc-CCccc
Confidence 3345655 53 47888988875 78999999 9999999999999999953 345 533 2
Q ss_pred CCCcccceEEEecC-ccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccc-------ccccc
Q 001989 343 PPGELGADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQ-------HIRRD 414 (985)
Q Consensus 343 ~~~~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~-------~irre 414 (985)
...++|+|++++++ |+|++ +||+|++++++++.+.+.+.. .+.|.+++....+ ..+..
T Consensus 184 ~~~~~~~d~~~~s~~K~l~~-----~~g~g~~~~~~~~~~~l~~~~---------~~~~~~~~~~~~~~~~~~~~g~~~~ 249 (379)
T 3ke3_A 184 DMKELGIDVLISAPQKGWSS-----TPCAGLVMLSAAAIKKVESTE---------SNCFSLDLKQWLTIMRAYENGGHAY 249 (379)
T ss_dssp CHHHHTCSEEEECTTTTTCS-----CCCEEEEEECHHHHHHHHTCC---------CSCSTTCHHHHHHHHHHHHTTSCCC
T ss_pred cccccCCCEEEecchhhcCC-----CCceEEEEECHHHHHhhhcCC---------CCceeecHHHHHHHHHhhhccCCCC
Confidence 33568999999998 66753 357899999999887663210 1123332211111 11111
Q ss_pred ccCCCccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCC--Ccce-EEEecCC-HHHHHH
Q 001989 415 KATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLP--FFDT-VKVKCAD-AHAIAS 490 (985)
Q Consensus 415 ~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~--~~~~-~~~~~~~-~~~v~~ 490 (985)
.+|.|+ ..++++.+++ .++..+|++++.++..++++++++.|+++| ++++.++ .... +.+..++ .....+
T Consensus 250 ~~t~~~---~~~~a~~aal--~~~~~~g~~~~~~~~~~l~~~l~~~l~~~g-~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 323 (379)
T 3ke3_A 250 HATMPT---DSLRQFRDAI--LEAKEIGFDILRDAQWELGNRVRKVLTDKG-IESVAAEGFEAPGVVVSYTERDDMHKGS 323 (379)
T ss_dssp SSCCCH---HHHHHHHHHH--HHHHHHCHHHHHHHHHHHHHHHHHHHHHTT-CCBSBCTTCBCSSEEEEECSCHHHHSSH
T ss_pred CCCCCH---HHHHHHHHHH--HHHHHhcHHHHHHHHHHHHHHHHHHHHHcC-CEecCCccccCceEEEEccCCcchHHHH
Confidence 234443 4555666665 455567899999999999999999999997 8876432 2222 3344444 333367
Q ss_pred HHHHcCceeeeec---------CCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 491 AAYKIEMNLRVVD---------SNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 491 ~L~~~GI~~~~~~---------~~~lris~t~~~t~edId~li~aL~~ 529 (985)
.|.++||.+.... .+.+|+|++.++|++|||+++++|++
T Consensus 324 ~L~~~Gi~v~~g~~~~~~~~~~~~~lRis~~~~~t~~di~~~~~~l~~ 371 (379)
T 3ke3_A 324 AFAEAGLQIAAGVPLKVGEPDNFKTFRLGLFGLDKLTDIDGTVERFEK 371 (379)
T ss_dssp HHHHTTCCCEECCCCSSCCCTTCCEEEEECCSHHHHTCHHHHHHHHHH
T ss_pred HHHHCCeEEeCCccccccccCcCCEEEEeCCcCCCHHHHHHHHHHHHH
Confidence 8889999875431 57899999999999999999999974
|
| >3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae} | Back alignment and structure |
|---|
Probab=99.86 E-value=3.7e-20 Score=213.17 Aligned_cols=330 Identities=11% Similarity=0.039 Sum_probs=224.1
Q ss_pred ecCCCCCCCCCcHHHHHHHHhCCccccccCCChhhHhhhHHHHHHHHHHHHHHhcCCCCcc-eeeccchHHHHHHHHHHh
Q 001989 170 FIGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMSN-ASLLDEGTAAAEAMAMCN 248 (985)
Q Consensus 170 ~lG~g~y~~~~p~~v~~~i~~~~~~~t~~~pyq~e~sqg~l~~i~e~q~~ia~L~g~~~~~-~sl~~~~ta~~ea~~~a~ 248 (985)
.++.| |..+|+.+.+++.. .- . ..|.++ ..+.+.++++.+++++|.+..+ +.+..|+|.++++++.++
T Consensus 16 ~~~pg--p~~~~~~v~~a~~~-~~-~---~~~~~~----~~~~~~~~~~~la~~~~~~~~~~v~~~~sgt~al~~~~~~~ 84 (411)
T 3nnk_A 16 LMGPG--PINADPRVLRAMSS-QL-I---GQYDPA----MTHYMNEVMALYRGVFRTENRWTMLVDGTSRAGIEAILVSA 84 (411)
T ss_dssp EESSS--CCCCCHHHHHHHTS-CC-C---CTTCHH----HHHHHHHHHHHHHHHHTCCCSEEEEEESCHHHHHHHHHHHH
T ss_pred eecCC--CCCCCHHHHHHhhc-cc-c---ccccHH----HHHHHHHHHHHHHHHhCCCCCcEEEECCCcHHHHHHHHHHh
Confidence 34555 55678887655443 21 1 222222 2366788899999999998776 556677888888777655
Q ss_pred hhhcCCCCEEEEcCCCChh--HHHHHHHhhcCCCeEEEEeCc--------hhhhc-cCC-CEeEEEEEcC-CCCeeeccH
Q 001989 249 NIQKGKKKTFIIASNCHPQ--TIDICITRADGFDIKVVVSDL--------KDIDY-KSG-DVCGVLVQYP-GTEGEVLDY 315 (985)
Q Consensus 249 ~~~~~~g~~Vlv~~~~H~s--~~~~~~~~a~~~gi~v~~v~~--------~~l~~-l~~-~t~~V~v~~p-n~~G~v~di 315 (985)
+ ++||+|+++...|++ +...+ +..|++++.++. ++|++ +++ ++++|++++| |++|.+.|+
T Consensus 85 -~--~~gd~Vl~~~~~~~~~~~~~~~----~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l 157 (411)
T 3nnk_A 85 -I--RPGDKVLVPVFGRFGHLLCEIA----RRCRAEVHTIEVPWGEVFTPDQVEDAVKRIRPRLLLTVQGDTSTTMLQPL 157 (411)
T ss_dssp -C--CTTCEEEEEECSHHHHHHHHHH----HHTTCEEEEEECCTTCCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCC
T ss_pred -c--CCCCEEEEecCCchHHHHHHHH----HHcCCeEEEEecCCCCCCCHHHHHHHHhhCCCeEEEEeCCCCCcceeccH
Confidence 2 389999999999987 44443 346888888754 45555 654 8999999986 889999999
Q ss_pred HHHHHHHHhCCcEEEEEecCccccCC-CCCCcccceEEEecC-ccccccCCCCCCcEEEEEEchhhHhcCCCc------e
Q 001989 316 GDFIKNAHANGVKVVMATDLLALTIL-KPPGELGADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGR------I 387 (985)
Q Consensus 316 ~~I~~~a~~~galliV~a~~~~lg~l-~~~~~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~------~ 387 (985)
++|+++||++|+++++|. .++.+.. ....++|+|+++++. |+|++ ++++|++++++++.+.+... +
T Consensus 158 ~~i~~l~~~~~~~li~De-a~~~~~~~~~~~~~~~d~~~~s~~K~l~~-----~~g~g~~~~~~~~~~~~~~~~~~~~~~ 231 (411)
T 3nnk_A 158 AELGEICRRYDALFYTDA-TASLGGNPLETDVWGLDAVSAGMQKCLGG-----PSGTSPITLSARMEEAIRRRKCVEEGI 231 (411)
T ss_dssp TTHHHHHHHHTCEEEEEC-TTTBTTBCCCTTTTTCSEEECCSTTTTCC-----CSSEEEEEECHHHHHHHHTTCCCCGGG
T ss_pred HHHHHHHHHcCCEEEEEC-CcccCCcccchhccCCcEEEecCccccCC-----CCceEEEEECHHHHHHHhhcccccccc
Confidence 999999999999999953 4555544 344678999999998 66643 45689999999877654221 1
Q ss_pred eeeeec---CCCCcceeeecccc---cccccccccCCCccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHH
Q 001989 388 VGVSID---SSGKPALRVAMQTR---EQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGL 461 (985)
Q Consensus 388 vG~t~d---~~g~~~~~l~l~tr---e~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L 461 (985)
.|.... ....+.+.+++... .+..+...+|.|+ ....++.+++ ..+..+|++++.++..++.+++.+.|
T Consensus 232 ~g~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~a~~~al--~~~~~~g~~~~~~~~~~~~~~l~~~L 306 (411)
T 3nnk_A 232 RTDAHRDGDEEMIYSNYFDLGMVMDYWGPERLNHHTEAT---TALFGARECA--RLILQEGLDYGIARHKLHGDALVKGI 306 (411)
T ss_dssp CCTTCCCCSSCCCSCSTTCHHHHHHHHSTTCCCCSCCCH---HHHHHHHHHH--HHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccCCCCcccccchHHHHhhhccccCCCCCCCH---HHHHHHHHHH--HHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 111000 00011122221100 0122334566665 3344444443 45556689999999999999999999
Q ss_pred hcCCCeEEcCCC---CcceEEEecC-C--HHHHHHHHHHc-Cceeeee----cCCeEEEEe-ccCCCHHHHHHHHHHHhC
Q 001989 462 KKLGTVEVQGLP---FFDTVKVKCA-D--AHAIASAAYKI-EMNLRVV----DSNTVTASF-DETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 462 ~~~g~~~~~~~~---~~~~~~~~~~-~--~~~v~~~L~~~-GI~~~~~----~~~~lris~-t~~~t~edId~li~aL~~ 529 (985)
+++| +++..+. ....+.+..+ + ..++.+.|.++ ||.++.- .++.+|+++ ...+|++||++++++|++
T Consensus 307 ~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~g~~~~~~~~iRi~~~~~~~~~~~i~~~~~~l~~ 385 (411)
T 3nnk_A 307 QAMG-LETFGDLKHKMNNVLGVVIPQGINGDQARKLMLEDFGIEIGTSFGPLHGKVWRIGTMGYNARKDCVMTTLSALEA 385 (411)
T ss_dssp HHTT-CCBCSCGGGBCSSEEEEECCTTCCHHHHHHHHHHHHSEEEEECCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHH
T ss_pred HHcC-CEeCCCcccccccEEEEECCCCCCHHHHHHHHHHhcCeEEeCccCCCCCCEEEEeCccCcCCHHHHHHHHHHHHH
Confidence 9987 8876432 1234556664 2 88999999876 9988642 357899998 667799999999999984
|
| >1iug_A Putative aspartate aminotransferase; wild type, pyridoxal-5'-phosphate form, riken structural genomics/proteomics initiative, RSGI; HET: LLP; 2.20A {Thermus thermophilus} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.86 E-value=1.3e-19 Score=203.79 Aligned_cols=318 Identities=12% Similarity=0.024 Sum_probs=221.0
Q ss_pred cCCCCCCCCCcHHHHHHHHhCCccccccCCChhhHhhhHHHHHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhh
Q 001989 171 IGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNI 250 (985)
Q Consensus 171 lG~g~y~~~~p~~v~~~i~~~~~~~t~~~pyq~e~sqg~l~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~ 250 (985)
+..|. ...|+.+.+++.+.-. ++ +. .+..+.+.++++.+|+++|.++.++.+++|+|.+++.++.++ .
T Consensus 5 ~~~~p--~~~~~~v~~a~~~~~~----~~-~~----~~~~~~~~~l~~~la~~~g~~~~~i~~~~g~t~a~~~~~~~~-~ 72 (352)
T 1iug_A 5 LTPGP--VRLHPKALEALARPQL----HH-RT----EAAREVFLKARGLLREAFRTEGEVLILTGSGTLAMEALVKNL-F 72 (352)
T ss_dssp CSSSS--CCCCHHHHHHHHSCCC----CT-TS----HHHHHHHHHHHHHHHHHHTCSSEEEEEESCHHHHHHHHHHHH-C
T ss_pred ccCCC--CCCCHHHHHHhccCCC----Cc-cC----HHHHHHHHHHHHHHHHHhCCCCceEEEcCchHHHHHHHHHhc-c
Confidence 34553 3477777656554322 11 11 233466778999999999998778889999998888777665 2
Q ss_pred hcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCch-----hhhccC-CCEeEEEEEcC-CCCeeeccHHHHHHHHH
Q 001989 251 QKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDLK-----DIDYKS-GDVCGVLVQYP-GTEGEVLDYGDFIKNAH 323 (985)
Q Consensus 251 ~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~~-----~l~~l~-~~t~~V~v~~p-n~~G~v~di~~I~~~a~ 323 (985)
++||+|++++..|+++. +...++..|++++.++.+ +++++. +++++|++.+| |.+|.+.|+++|.++|+
T Consensus 73 --~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~ 148 (352)
T 1iug_A 73 --APGERVLVPVYGKFSER--FYEIALEAGLVVERLDYPYGDTPRPEDVAKEGYAGLLLVHSETSTGALADLPALARAFK 148 (352)
T ss_dssp --CTTCEEEEEECSHHHHH--HHHHHHHTTCEEEEEECCTTCCCCTTTSCCSSCSEEEEESEETTTTEECCHHHHHHHHH
T ss_pred --CCCCeEEEEeCCchhHH--HHHHHHHcCCceEEEeCCCCCCCCHHHHhccCCcEEEEEEecCCcceecCHHHHHHHHH
Confidence 37899999999999976 222234468888887653 222222 57889999988 78999999999999999
Q ss_pred hC--CcEEEEEecCccccCCC-CCCcccceEEEecC-ccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcc
Q 001989 324 AN--GVKVVMATDLLALTILK-PPGELGADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPA 399 (985)
Q Consensus 324 ~~--galliV~a~~~~lg~l~-~~~~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~ 399 (985)
++ |+++++| +.+++|... ...++|+|+++++. |++++ ++|+|++++++++++.+.+ -+
T Consensus 149 ~~~~~~~li~D-~a~~~~~~~~~~~~~~~d~~~~s~~K~~~~-----~~g~G~~~~~~~~~~~~~~--~~---------- 210 (352)
T 1iug_A 149 EKNPEGLVGAD-MVTSLLVGEVALEAMGVDAAASGSQKGLMC-----PPGLGFVALSPRALERLKP--RG---------- 210 (352)
T ss_dssp HHCTTCEEEEE-CTTTBTTBCCCSGGGTCSEEEEESSSTTCC-----CSCEEEEEECHHHHHTCCC--CS----------
T ss_pred hhCCCCEEEEE-CCccccCcceeccccCeeEEEecCcccccC-----CCceeEEEECHHHHHHhhC--CC----------
Confidence 99 9999995 344555432 23457899999998 65743 3468999999988877643 11
Q ss_pred eeeeccc--ccccccccccCCCccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCC-Ccc
Q 001989 400 LRVAMQT--REQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLP-FFD 476 (985)
Q Consensus 400 ~~l~l~t--re~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~-~~~ 476 (985)
+.+++.. ..+..++..+|.|. ....++.+++ ..+... ++++.++..++++++.+.|+++| +++..+. ...
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~a~~~al--~~~~~~-~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~~~~ 283 (352)
T 1iug_A 211 YYLDLARELKAQKEGESAWTPAI---NLVLAVAAVL--EEVLPR-LEEHLALKAWQNALLYGVGEEGG-LRPVPKRFSPA 283 (352)
T ss_dssp STTCHHHHHHHHTTTCCSSCCCH---HHHHHHHHHH--HHHGGG-HHHHHHHHHHHHHHHHHHHHHTT-CEESCSSBCTT
T ss_pred ceeeHHHHHhhcccCCCCCCCCH---HHHHHHHHHH--HHHHHH-HHHHHHHHHHHHHHHHHHHHHCC-CcccccccCCe
Confidence 1111110 00111222344443 2333444443 444343 88899999999999999999986 8887432 233
Q ss_pred eEEEecC-C--HHHHHHHHHHcCceeeee----cCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 477 TVKVKCA-D--AHAIASAAYKIEMNLRVV----DSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 477 ~~~~~~~-~--~~~v~~~L~~~GI~~~~~----~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
.+.+..+ + ..++.++|.++||.+... .++.+|++++..+|++|+++++++|..
T Consensus 284 ~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~ 343 (352)
T 1iug_A 284 VAAFYLPEGVPYARVKEAFAQRGAVIAGGQGPLKGKVFRLSLMGAYDRYEALGVAGMFRE 343 (352)
T ss_dssp CEEEECCTTCCHHHHHHHHHTTTEECEECCGGGTTTEEEECCCSSCCHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHCCEEEEeCCCccCCCEEEEEccccCCHHHHHHHHHHHHH
Confidence 4566665 3 788999999999988653 257899999999999999999999974
|
| >2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=4.8e-21 Score=217.42 Aligned_cols=298 Identities=15% Similarity=0.158 Sum_probs=202.6
Q ss_pred HHHHHHH-HHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEc--CC
Q 001989 634 FNNLGEW-LCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVG--TD 710 (985)
Q Consensus 634 ~~e~~~~-la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~--~d 710 (985)
..+++++ +++++|.+ ..++.++|++|+..++.++. .++++|++++..|..+...++..|++++.+| ++
T Consensus 55 ~~~l~~~~la~~~~~~-~v~~~~g~t~a~~~~~~~~~--------~~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~ 125 (371)
T 2e7j_A 55 IHDFIHNQLPKFLGCD-VARVTNGAREAKFAVMHSLA--------KKDAWVVMDENCHYSSYVAAERAGLNIALVPKTDY 125 (371)
T ss_dssp HHHHHHTHHHHHTTSS-EEEEESSHHHHHHHHHHHHC--------CTTCEEEEETTCCHHHHHHHHHTTCEEEEECCCCT
T ss_pred HHHHHHHHHHHHcCCC-EEEEeCChHHHHHHHHHHHh--------CCCCEEEEccCcchHHHHHHHHcCCeEEEeecccC
Confidence 5688899 99999988 44555666777755554431 3678999999888777777888999999999 88
Q ss_pred CCCCCCHHHHHHHHHhcC--CCEEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCccCCcEE
Q 001989 711 AKGNINIEELRKAAEANR--DNLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIGADVC 787 (985)
Q Consensus 711 ~~g~iD~e~L~~~i~~~~--~~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~g~Di~ 787 (985)
+++.+|+++|+++++++. +++++|++++| |++|.+. |+++|.++|+++|+++|+|+++..+...+ ....+++|++
T Consensus 126 ~~~~~d~~~l~~~l~~~~~~~~~~~v~~~~~~nptG~~~-~~~~i~~~~~~~~~~li~D~a~~~~~~~~-~~~~~~~di~ 203 (371)
T 2e7j_A 126 PDYAITPENFAQTIEETKKRGEVVLALITYPDGNYGNLP-DVKKIAKVCSEYDVPLLVNGAYAIGRMPV-SLKEIGADFI 203 (371)
T ss_dssp TTCCCCHHHHHHHHHHHTTTSCEEEEEEESSCTTTCCCC-CHHHHHHHHHTTTCCEEEECTTTBTTBCC-CHHHHTCSEE
T ss_pred CCCCcCHHHHHHHHHhhcccCCeEEEEEECCCCCCcccC-CHHHHHHHHHHcCCeEEEECccccCCCCC-ChhhcCCCEE
Confidence 788999999999997432 47899999998 5799998 89999999999999999999986432221 2345678999
Q ss_pred EeCCcccccccCCCCCCceEEEEEcccccCc-CCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHH
Q 001989 788 HLNLHKTFCIPHGGGGPGMGPIGVKKHLAPF-LPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSK 866 (985)
Q Consensus 788 ~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~-lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~e 866 (985)
++|+||+|+. ++++|++++++++.+. +.....+...+ ...+.++.+ ...+.++.+.+..+..
T Consensus 204 ~~s~sK~~~~-----~~~~G~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~--------~~~~~a~~~~l~~~~~- 266 (371)
T 2e7j_A 204 VGSGHKSMAA-----SGPIGVMGMKEEWAEIVLRRSEKYKNKE---VELLGCTAR--------GATIITLMASFPHVRE- 266 (371)
T ss_dssp EEEHHHHSSC-----CSSCEEEEECTTTTTTTTCBCSSCTTSB---GGGTTCCCC--------SHHHHHHHHHHHHHHH-
T ss_pred EecCCcCCCC-----CCCcEEEEEechhhhhhccccccCcccc---cccccCCcC--------HHHHHHHHHHHHHHHH-
Confidence 9999999852 3478999999887665 53221110000 000011111 1112222233333322
Q ss_pred HHHHHHHHH--HHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCCCCC--
Q 001989 867 GLTEASKIA--ILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPV-- 941 (985)
Q Consensus 867 Gl~~~~~~~--~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~~p~-- 941 (985)
+..++. .++++++.+.|++ ++.+. .+.....+.+.+.++ +..++.+.|.++||.+....+..
T Consensus 267 ---~~~~~~~~~~~~~~l~~~L~~~~~~~~--~~~~~~~~~~~~~~~--------~~~~~~~~l~~~gi~~~~~~~~~~~ 333 (371)
T 2e7j_A 267 ---RIKRWDEEVEKARRFAAEMEKLGIKQL--GDNPHNHDLMFFHAE--------VLYEISKKAKGGRFFLYRELKSRKI 333 (371)
T ss_dssp ---HGGGHHHHHHHHHHHHHHHHHTTCEEE--SSSSCCSSEEEEECH--------HHHHHHHHSSSGGGHHHHHHHHTTE
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHcCcEEe--cCCCccCceEEEECC--------CHHHHHHHHHHCCEEEEeccccccc
Confidence 334456 6788899999986 44432 221001122344432 46789999998899864311111
Q ss_pred ----CCEEE-EeccCC-CCHHHHHHHHccCChhHHHHhh
Q 001989 942 ----PGTLM-IEPTES-ESKSWTGIVMLSSPSEKKLHRL 974 (985)
Q Consensus 942 ----~~~lr-is~t~~-~t~eeId~~~~~~~l~~~~~~~ 974 (985)
++.+| ++++.. +|++|+++ +++.|+++++++
T Consensus 334 ~g~~~~~iRii~~~~~~~~~~~i~~--~~~~l~~~~~~~ 370 (371)
T 2e7j_A 334 HGIKPGLTRYFKLSTYGLSDEEVDY--VLNAFKEIIEKY 370 (371)
T ss_dssp ECSCTTCCSEEEEECTTCCHHHHHH--HHHHHHHHHHHC
T ss_pred cCCCCCceEEEEeeccCCCHHHHHH--HHHHHHHHHHhc
Confidence 47899 999988 99999999 788888887654
|
| >1c4k_A Protein (ornithine decarboxylase); lyase; HET: PLP GTP; 2.70A {Lactobacillus SP} SCOP: c.23.1.4 c.67.1.5 d.125.1.1 PDB: 1ord_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=7.5e-21 Score=232.98 Aligned_cols=330 Identities=12% Similarity=0.047 Sum_probs=224.0
Q ss_pred ceecCCCCCCCCCcHHHHHHHHhC-C---cccccc--CCChhhHhh-----hHH----HHHHHHHHHHHHhcCCCCccee
Q 001989 168 KSFIGMGYYNTHVPPVILRNIMEN-P---AWYTQY--TPYQAEIAQ-----GRL----ESLLNFQTMIADLTGLPMSNAS 232 (985)
Q Consensus 168 ~~~lG~g~y~~~~p~~v~~~i~~~-~---~~~t~~--~pyq~e~sq-----g~l----~~i~e~q~~ia~L~g~~~~~~s 232 (985)
..|.+.|.|++++|......-+.. | +|++.| ++|++++++ |.+ +.+.++|+.+|+++|++.+ +.
T Consensus 115 ~~~~~~~~~~~~~Pgh~~g~~~~~~p~g~~~~~~~g~~~~~~di~~~~~~l~~l~~~~~~i~e~e~~lA~~~gae~~-i~ 193 (730)
T 1c4k_A 115 KEYVSRYLIQFDCPGHQGGQYYRKHPAGREFYDFFGETVFRADLCNADVALGDLLIHEGPAVAAEKHAARVYNADKT-YF 193 (730)
T ss_dssp HHHHTSCCCCCSSSTTTTTTTGGGSHHHHHHHHHHCSHHHHSCCCTTSGGGCBTTTTBTHHHHHHHHHHHHTTCSEE-EE
T ss_pred HHHHhcCCcccccCccccccccCCcchhhHHHhhcchhhhhHHhhhhhccCCCccCChHHHHHHHHHHHHHHCCCcE-EE
Confidence 457788888888876442100000 0 455555 677877777 555 6889999999999999864 55
Q ss_pred eccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEe-------------Cchhh-----hc-
Q 001989 233 LLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVS-------------DLKDI-----DY- 293 (985)
Q Consensus 233 l~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v-------------~~~~l-----~~- 293 (985)
+++|+|+++.++++++. ++||+||+++.+|+++...+ ++..|++++++ |+++| ++
T Consensus 194 v~nGtt~an~~ai~al~---~pGD~VLv~~~~H~S~~~~~---~~l~Ga~~v~v~~~~~~~~i~g~id~e~L~~~~le~~ 267 (730)
T 1c4k_A 194 VLGGSSNANNTVTSALV---SNGDLVLFDRNNHKSVYNSA---LAMAGGRPVYLQTNRNPYGFIGGIYDSDFDEKKIREL 267 (730)
T ss_dssp ESSHHHHHHHHHHHHHC---CTTCEEEEETTCCHHHHHHH---TTTTCCEEEEECEEECTTCCEEEECGGGSCHHHHHHH
T ss_pred ECCHHHHHHHHHHHHhc---CCCCEEEEcCCchHHHHHHH---HHHCCCEEEEEeCCccccCccCCCCHHHHhhhHHHHH
Confidence 66777788888777752 38999999999999999872 23467777654 44566 66
Q ss_pred cCCC------E----eEEEEEcCCCCeeeccHHHHHHHHHhCCcEEEEEecCccccC-CC------CCC---cccce---
Q 001989 294 KSGD------V----CGVLVQYPGTEGEVLDYGDFIKNAHANGVKVVMATDLLALTI-LK------PPG---ELGAD--- 350 (985)
Q Consensus 294 l~~~------t----~~V~v~~pn~~G~v~di~~I~~~a~~~galliV~a~~~~lg~-l~------~~~---~~GaD--- 350 (985)
+.++ + ++|++++||++|.+.|+++|+++||++|++++||. .++.++ +. .+. ++|+|
T Consensus 268 i~~~~~~~~~t~~~vklviv~~pn~~G~v~dl~~I~~la~~~g~~livDe-Ah~~~~~f~~~~~g~~~l~~~~~g~D~~~ 346 (730)
T 1c4k_A 268 AAKVDPERAKWKRPFRLAVIQLGTYDGTIYNAHEVVKRIGHLCDYIEFDS-AWVGYEQFIPMMRNSSPLLIDDLGPEDPG 346 (730)
T ss_dssp TTTSSHHHHTCSCCBSEEEEESBCTTSEEECHHHHHHHHGGGBSEEEEEC-TTCCGGGSSGGGGGGCTTSCCCCCTTSCE
T ss_pred hhcCCcccccccCCCeEEEEECCCCCCeecCHHHHHHHHHHcCCeEEEEc-ccccccccCcccCCcCcccccccCCCCCC
Confidence 6654 5 89999999999999999999999999999999952 333211 10 122 45998
Q ss_pred -EEEecC-ccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHH
Q 001989 351 -IVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLA 428 (985)
Q Consensus 351 -i~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a 428 (985)
++++|+ |+|++|. ++|+++++++.+.. +..++ + . .. + +........+++++ ..+.+
T Consensus 347 ~iv~~S~hK~L~g~~-----~gg~I~v~~~~l~g-~~~~i----~----~-~~--~--~~~~~~~~stsp~~---~~iaa 404 (730)
T 1c4k_A 347 IIVVQSVHKQQAGFS-----QTSQIHKKDSHIKG-QLRYC----D----H-KH--F--NNSFNLFMSTSPFY---PMYAA 404 (730)
T ss_dssp EEEEECHHHHSSCCT-----TCEEEEEECGGGTT-STTCC----C----H-HH--H--HHHHHHHSCSSCCH---HHHHH
T ss_pred EEEEECCCCCCCCCC-----CEEEEEecchhhcC-ccccc----C----H-HH--H--HHHHHHhCCCCCcH---HHHHH
Confidence 999998 7665432 35789888765421 00110 0 0 00 0 00001122233332 33444
Q ss_pred HHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhc-CCCeEEcCCCC---------------------------------
Q 001989 429 NMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKK-LGTVEVQGLPF--------------------------------- 474 (985)
Q Consensus 429 ~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~-~g~~~~~~~~~--------------------------------- 474 (985)
+.+++ .++..++.++..++..+++++++++|++ +.|++++.+..
T Consensus 405 l~aA~--~~l~~~~g~~~~~~~~~~a~~lr~~L~~~i~g~~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 482 (730)
T 1c4k_A 405 LDVNA--AMQEGEAGRKLWHDLLITTIEARKKLIKAGSMFRPFVPPVVNGKKWEDGDTEDMANNIDYWRFEKGAKWHAYE 482 (730)
T ss_dssp HHHHH--HHHSHHHHHHHHHHHHHHHHHHHHHHHHTTCSSEESSCSEETTEEGGGSCHHHHTTCGGGGBCCTTCTTTCCT
T ss_pred HHHHH--HHHHhhhhHHHHHHHHHHHHHHHHHHhhhCCCeEEccccccccccccccccccccccchhhccCccchhcccc
Confidence 44443 4444433466778899999999999998 53388763210
Q ss_pred --------cce--EEEecC------------C--HHHHHHHHHHcCceeeeecCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 475 --------FDT--VKVKCA------------D--AHAIASAAYKIEMNLRVVDSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 475 --------~~~--~~~~~~------------~--~~~v~~~L~~~GI~~~~~~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
.++ ++|..+ + +.++.+.|.++||.++......+|+++|..+|++|+++|+++|.+
T Consensus 483 ~~~~~~~~idp~kv~i~~pg~~~~~g~~~~~g~~~~~l~~~L~e~GI~v~~~~~~~ir~~~s~g~t~e~i~~Ll~aL~~ 561 (730)
T 1c4k_A 483 GYGDNQYYVDPNKFMLTTPGINPETGDYEDFGVPATIVANYLRDHGIIPEKSDLNSILFLMTPAETPAKMNNLITQLLQ 561 (730)
T ss_dssp TCCTTCEEECTTEEEEECSSEETTTTEECSSCCCHHHHHHHHHHTTCCCSEECSSEEEEECCTTCCHHHHHHHHHHHHH
T ss_pred ccCCcccccCCeEEEEEeCCcccccccccccCCCHHHHHHHHHHCCcEEEECCCCeEEEEeCCCCCHHHHHHHHHHHHH
Confidence 111 566663 2 789999999999999887778999999999999999999999974
|
| >2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.86 E-value=2e-19 Score=205.14 Aligned_cols=336 Identities=16% Similarity=0.133 Sum_probs=229.4
Q ss_pred HHHHHHHHHHHhcCCCccceecCCCCCCCCCcHHHHHHHHhCCccccccCCChhhHhhhHHHHHHHHHHHHHHhcCCC-C
Q 001989 150 ESQMIEHMQKLASMNKVYKSFIGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLP-M 228 (985)
Q Consensus 150 e~e~~~~~~~l~~~n~~~~~~lG~g~y~~~~p~~v~~~i~~~~~~~t~~~pyq~e~sqg~l~~i~e~q~~ia~L~g~~-~ 228 (985)
..++++++..+. +..|.++ .+ +..+|+.+.+++.+.. . +.|.+. ..+...++++.+++++|.+ .
T Consensus 7 ~~~~r~~f~~~~--~~~~l~~--~~--~~~~~~~v~~a~~~~~---~--~~~~~~----~~~~~~~~~~~la~~~g~~~~ 71 (386)
T 2dr1_A 7 EEAFKEVYEMVK--PKYKLFT--AG--PVACFPEVLEIMKVQM---F--SHRSKE----YRKVHMDTVERLREFLEVEKG 71 (386)
T ss_dssp HHHHHHHHHHHS--CCSEECC--SS--SCCCCHHHHHHTTSCC---C--CTTSHH----HHHHHHHHHHHHHHHHTCSSS
T ss_pred hHHHHHHHhhcC--ccceeec--CC--CcCCcHHHHHHHhccc---c--cccCHH----HHHHHHHHHHHHHHHhCCCCC
Confidence 356788886443 3334333 23 2346666765544321 1 123222 2566778889999999998 5
Q ss_pred cceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChh--HHHHHHHhhcCCCeEEEEeCc--------hhhhc-c--C
Q 001989 229 SNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQ--TIDICITRADGFDIKVVVSDL--------KDIDY-K--S 295 (985)
Q Consensus 229 ~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s--~~~~~~~~a~~~gi~v~~v~~--------~~l~~-l--~ 295 (985)
.++.+++|+|.+++.++.++ . ++||+|++++..|++ +...++ ..|++++.++. ++|++ + +
T Consensus 72 ~~v~~~~g~t~a~~~~~~~l-~--~~gd~vl~~~~~~~~~~~~~~~~----~~g~~~~~v~~~~~~~~d~~~l~~~l~~~ 144 (386)
T 2dr1_A 72 EVLLVPSSGTGIMEASIRNG-V--SKGGKVLVTIIGAFGKRYKEVVE----SNGRKAVVLEYEPGKAVKPEDLDDALRKN 144 (386)
T ss_dssp EEEEESSCHHHHHHHHHHHH-S--CTTCEEEEEESSHHHHHHHHHHH----HTTCEEEEEECCTTCCCCHHHHHHHHHHC
T ss_pred cEEEEeCChHHHHHHHHHHh-h--cCCCeEEEEcCCchhHHHHHHHH----HhCCceEEEecCCCCCCCHHHHHHHHhcC
Confidence 56888999998888777664 2 378999999999988 555443 45778777653 45666 6 5
Q ss_pred CCEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCC-CCCCcccceEEEecC-ccccccCCCCCCcEEE
Q 001989 296 GDVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTIL-KPPGELGADIVVGSA-QRFGVPMGYGGPHAAF 372 (985)
Q Consensus 296 ~~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l-~~~~~~GaDi~v~s~-k~lg~P~~~GGP~~G~ 372 (985)
+++++|++++| |++|.+.|+++|.++|+++|+++++| +..+.+.. .+..++|+|++++|. |+|++| +|+|+
T Consensus 145 ~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D-~a~~~~~~~~~~~~~~~di~~~s~sK~~~~~-----~g~G~ 218 (386)
T 2dr1_A 145 PDVEAVTITYNETSTGVLNPLPELAKVAKEHDKLVFVD-AVSAMGGADIKFDKWGLDVVFSSSQKAFGVP-----PGLAI 218 (386)
T ss_dssp TTCCEEEEESEETTTTEECCHHHHHHHHHHTTCEEEEE-CTTTBTTBCCCTTTTTCSEEEEETTSTTCCC-----SSCEE
T ss_pred CCCcEEEEEeecCCcchhCCHHHHHHHHHHcCCeEEEE-ccccccCccccccccCCcEEEEeccccccCC-----CceEE
Confidence 78999999987 88999999999999999999999995 34555543 234678999999998 777643 24799
Q ss_pred EEEchhhHhcCCC-ceeeeeecCCCCcceeeeccc--cccc-ccccccCCCccchhHHHHHHHHHHHHHhCcc-hHHHHH
Q 001989 373 LATSQEYKRMMPG-RIVGVSIDSSGKPALRVAMQT--REQH-IRRDKATSNICTAQALLANMAAMYAVYHGPE-GLKTIA 447 (985)
Q Consensus 373 l~~~~~~~~~lp~-~~vG~t~d~~g~~~~~l~l~t--re~~-irre~atsni~t~~~l~a~~aa~~l~~~g~~-Gl~~i~ 447 (985)
+++++++++.+.+ +..| +.+++.. +..+ .+...+|.|. ....++.+++ ..+... |++++.
T Consensus 219 ~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~---~~~~a~~~~l--~~~~~~g~~~~~~ 283 (386)
T 2dr1_A 219 GAFSERFLEIAEKMPERG----------WYFDIPLYVKYLKEKESTPSTPPM---PQVFGINVAL--RIIEKMGGKEKWL 283 (386)
T ss_dssp EEECHHHHHHHTTCTTCC----------STTCHHHHHHHHHHHSSCSSCCCH---HHHHHHHHHH--HHHHHTTCHHHHH
T ss_pred EEECHHHHHHHhcCCCCc----------eEEeHHHHHHhhccCCCCCCCCCH---HHHHHHHHHH--HHHHHhcCHHHHH
Confidence 9999988776632 1112 1122110 0000 1112222222 2233333333 444455 789999
Q ss_pred HHHHHHHHHHHHHHhcCCCeEEcCCC---CcceEEEecC-C--HHHHHHHHHHcCceeeee----cCCeEEEEeccCCCH
Q 001989 448 QRVHGLAGTFALGLKKLGTVEVQGLP---FFDTVKVKCA-D--AHAIASAAYKIEMNLRVV----DSNTVTASFDETTTL 517 (985)
Q Consensus 448 ~~~~~~a~~l~~~L~~~g~~~~~~~~---~~~~~~~~~~-~--~~~v~~~L~~~GI~~~~~----~~~~lris~t~~~t~ 517 (985)
++..++++++.+.|+++| +++..+. ....+.+..+ + ..++.++|.++||.+... ..+.+|++++.++|+
T Consensus 284 ~~~~~~~~~l~~~L~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~iRi~~~~~~~~ 362 (386)
T 2dr1_A 284 EMYEKRAKMVREGVREIG-LDILAEPGHESPTITAVLTPPGIKGDEVYEAMRKRGFELAKGYGSVKEKTFRIGHMGYMKF 362 (386)
T ss_dssp HHHHHHHHHHHHHHHHTT-CCBSSCTTCBCSSEEEEECCTTCCHHHHHHHHHHTTEECEECCGGGTTTEEEEECCSSCCH
T ss_pred HHHHHHHHHHHHHHHHcC-CeeCcCccccCCceEEEEcCCCCCHHHHHHHHHHCCeEEecCccccCCCEEEEECCCCCCH
Confidence 999999999999999986 8776431 2334556665 2 888999999999988653 247899999999999
Q ss_pred HHHHHHHHHHhC
Q 001989 518 EDVDKLFIVFAG 529 (985)
Q Consensus 518 edId~li~aL~~ 529 (985)
+|+++++++|+.
T Consensus 363 ~~i~~~~~~l~~ 374 (386)
T 2dr1_A 363 EDIQEMLDNLRE 374 (386)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999999974
|
| >3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine, sepsecs, protein-RNA complex, alternative splicing, cytoplasm, protein biosynthesis, pyridoxal phosphate, selenium; HET: PLR SEP; 2.81A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.4e-19 Score=204.66 Aligned_cols=364 Identities=13% Similarity=0.146 Sum_probs=234.4
Q ss_pred CCccccCCCCHHHHHHHHHHHhccccCcccccccccccccCCCccccccc---cccccc---------cccCCCCchhhh
Q 001989 560 THPVFNKYHTEHELLRYIHLLQSKELSLCHSMIPLGSCTMKLNATTEMMP---VTWPSF---------ANIHPFAPADQA 627 (985)
Q Consensus 560 ~~p~~~~~~se~e~~~~l~~l~~~~~~~~~~~~~lG~~t~~~~~~~~~~~---~~~~~f---------~~~~p~~p~e~~ 627 (985)
.+| +.|++|.+|.-.+.+|+..|.. ++.+.| -+....-... +.+.+| .++.--|| ..
T Consensus 40 ~~P--~~g~~d~~ie~~l~~la~mdsn-----n~~~~~--g~GERE~Rv~s~lv~rrh~~~~HGiGRSGd~~~~QP--KA 108 (501)
T 3hl2_A 40 KCP--ENGWDESTLELFLHELAIMDSN-----NFLGNC--GVGEREGRVASALVARRHYRFIHGIGRSGDISAVQP--KA 108 (501)
T ss_dssp CCC--SSCCCHHHHHHHHHHHHTTBGG-----GCSSCC--CCSSCCCCCSCHHHHHHTTTCCSCBSCSSCTTCCCT--TB
T ss_pred CCC--ccCCCHHHHHHHHHHHHhhccC-----CCcccC--CcccchHHHHHHHHHhhccCcccCCCCccccccCCC--Cc
Confidence 357 6899999999999999999843 233322 1112111111 111121 12444455 23
Q ss_pred hhHHHHHHH----HHHHHHHHhCCCcc--ceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCC
Q 001989 628 QGYQEMFNN----LGEWLCTITGFDSF--SLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCG 701 (985)
Q Consensus 628 ~G~~~~~~e----~~~~la~l~G~~~~--~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G 701 (985)
.|..-+..- +..||+++ |++.. .|.+++++.+++++++++.. . +..++++||+|+.+|-+..+++.+.|
T Consensus 109 aGssll~~ltn~l~ld~L~~~-G~~~~~~~flVnGsTgg~lamilaa~r---~-~rpg~d~VIvpRn~HKSv~kAliL~G 183 (501)
T 3hl2_A 109 AGSSLLNKITNSLVLDIIKLA-GVHTVANCFVVPMATGMSLTLCFLTLR---H-KRPKAKYIIWPRIDQKSCFKSMITAG 183 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT-TCTTCCEEEEESSCHHHHHHHHHHHHH---H-HCTTCCEEEEECCCCHHHHHHHHHTT
T ss_pred cchHHHHHHHHHHHHHHHHHc-CCCCCCcEEEECcHHHHHHHHHHHHcC---c-ccCCCCEEEEecchHHHHHHHHHHcC
Confidence 453322221 23455555 98874 45566666566666655432 1 11124899999999999999999999
Q ss_pred cEEEEEcC---CCCCCCCHHHHHHHHHhcC-CCEEEEEEEcCCCcc-ccccCHHHHHHHHHHcCCEEEEEccccccccCC
Q 001989 702 MKIVSVGT---DAKGNINIEELRKAAEANR-DNLSTLMVTYPSTHG-VYEEGIDEICKIIHDNGGQVYMDGANMNAQVGL 776 (985)
Q Consensus 702 ~~vv~v~~---d~~g~iD~e~L~~~i~~~~-~~t~~Vvv~~pn~~G-~i~~di~eI~~la~~~galliVD~a~~~~~~~l 776 (985)
+++++|+. ++...+|+++|+++|+++. +...+|+.+.+++.| +.+ ||++|+++||++|++++||+||.. +..+
T Consensus 184 l~Pv~V~p~~d~~~~~id~e~le~aI~e~ga~~i~~V~~Ttt~y~p~~~d-dI~eIaeIch~~gIpllVDeAhGa-h~~~ 261 (501)
T 3hl2_A 184 FEPVVIENVLEGDELRTDLKAVEAKVQELGPDCILCIHSTTSCFAPRVPD-RLEELAVICANYDIPHIVNNAYGV-QSSK 261 (501)
T ss_dssp CEEEEECEEEETTEEEECHHHHHHHHHHHCGGGEEEEEEECSCCTTBCCC-CHHHHHHHHHHHTCCEEEECTTCT-TCHH
T ss_pred CeEEEEeeeecccccCCCHHHHHHHHHhcCCCcEEEEEecCCCCCCcccc-cHHHHHHHHHHcCCeEEEeCcchh-hhhh
Confidence 99999976 2347899999999999764 344444444444433 556 999999999999999999998842 2111
Q ss_pred C--CC---CccC-CcEEEeCCcccccccCCCCCCceEEEEEcc-cccCcC----CCCccccCCCCCCCCCCCCCCCCCCc
Q 001989 777 T--SP---GYIG-ADVCHLNLHKTFCIPHGGGGPGMGPIGVKK-HLAPFL----PSHPVVSTGGIPAPEKSQPLGTIAAA 845 (985)
Q Consensus 777 ~--~p---g~~g-~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~-~l~~~l----p~~~~g~~~~~~~~~~~~~~~~i~s~ 845 (985)
. .| ...| +|+++.|.||++..|.+ +|++++++ ++.+.+ ||+ .++
T Consensus 262 ~~~lp~sA~~~GrAD~vVqS~HK~llvpIG-----G~ii~~~d~e~l~~~~~~yPGr-------------------~S~- 316 (501)
T 3hl2_A 262 CMHLIQQGARVGRIDAFVQSLDKNFMVPVG-----GAIIAGFNDSFIQEISKMYPGR-------------------ASA- 316 (501)
T ss_dssp HHHHHHHHHHHSCCCEEEEEHHHHHCCCSS-----CEEEEESCHHHHHHHHHTSCSC-------------------BCS-
T ss_pred hhhhHHHHHhcCCCcEEEecccccceeecC-----ceEEEeCCHHHHHHHHHhCCCC-------------------CCC-
Confidence 1 01 2357 99999999999987754 24555553 333322 211 011
Q ss_pred chhhhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc-----cCCeeecCCCCceeeEEEEEecCccccCCCCH
Q 001989 846 PWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK-----HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEP 920 (985)
Q Consensus 846 ~~g~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~-----g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~ 920 (985)
......|+.+..+|.+||+++.++..++++||+++|++ +-+++ ..+..+. .+.+.+..+....+...
T Consensus 317 -----Spsldl~~tLL~lGr~Gy~~ll~e~~ela~~L~~~L~~la~~~ge~ll-~~~~n~i--s~a~tl~~~~~~~~~~~ 388 (501)
T 3hl2_A 317 -----SPSLDVLITLLSLGSNGYKKLLKERKEMFSYLSNQIKKLSEAYNERLL-HTPHNPI--SLAMTLKTLDEHRDKAV 388 (501)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCBC-CCTTCSS--EEEEECTTSCTTTSCHH
T ss_pred -----cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhc-CCCCCce--eEEEecccccccccccH
Confidence 12345689999999999999999999999999999986 22333 2222232 34556543322222346
Q ss_pred HHHHHHHHHCCCccCC-----C----------C-------CCCCCEEEEeccCCCCHHHHHHHHccCChhHHHHhhccC
Q 001989 921 EDVAKRLMDYGFHGPT-----M----------S-------WPVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRLKMG 977 (985)
Q Consensus 921 ~~v~~~L~~~Gi~~~~-----~----------~-------~p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~~~~ 977 (985)
..+-..|..+++-... - . +| -..+-++...-.+++|||. |++.|++++.++++.
T Consensus 389 t~~gs~Lf~r~vsG~Rvv~~~~~~~i~g~~f~~~g~h~~~~~-~~yl~~a~aiG~~~~~v~~--~~~~l~~~~~~~~~~ 464 (501)
T 3hl2_A 389 TQLGSMLFTRQVSGARVVPLGSMQTVSGYTFRGFMSHTNNYP-CAYLNAASAIGMKMQDVDL--FIKRLDRCLKAVRKE 464 (501)
T ss_dssp HHHHHHHHHTTCCSCEEECTTCCEEETTEEESSTTTTSSCCS-SCEEEEECCTTCCHHHHHH--HHHHHHHHHHHHHC-
T ss_pred HHHHHHHHhcCCCcceeecCCCceEECCeeecCcccCCCCCC-chHHHHHHHcCCCHHHHHH--HHHHHHHHHHHHHHh
Confidence 6788889888764221 0 1 12 2678888889999999999 889999999888764
|
| >3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI, transferase; HET: PLP; 2.05A {Escherichia coli} PDB: 3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B* | Back alignment and structure |
|---|
Probab=99.86 E-value=3.4e-19 Score=206.23 Aligned_cols=293 Identities=16% Similarity=0.131 Sum_probs=212.3
Q ss_pred HhhhHHHHHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhh-hcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEE
Q 001989 205 IAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNI-QKGKKKTFIIASNCHPQTIDICITRADGFDIKV 283 (985)
Q Consensus 205 ~sqg~l~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~-~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v 283 (985)
...+..+.+.++++.+++++|.++.++.+++|+|.++++++.++.- ..++||+|+++...|+++...+..+ +..|+++
T Consensus 62 ~~~~~~~~~~~l~~~la~~~~~~~~~v~~~~ggt~a~~~a~~~l~~~~~~~gd~Vl~~~~~~~~~~~~~~~~-~~~g~~~ 140 (423)
T 3lvm_A 62 FGWQAEEAVDIARNQIADLVGADPREIVFTSGATESDNLAIKGAANFYQKKGKHIITSKTEHKAVLDTCRQL-EREGFEV 140 (423)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCGGGEEEESSHHHHHHHHHHHHHHHHTTTCCEEEEETTSCHHHHHHHHHH-HHTTCEE
T ss_pred hhHHHHHHHHHHHHHHHHHcCCCCCeEEEeCChHHHHHHHHHHHHHhhccCCCEEEECCccchHHHHHHHHH-HHcCCEE
Confidence 4556678888999999999999988999999999888887765431 1236899999999999998887654 4568888
Q ss_pred EEeCc--------hhhhc-cCCCEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCC-CCCCcccceEE
Q 001989 284 VVSDL--------KDIDY-KSGDVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTIL-KPPGELGADIV 352 (985)
Q Consensus 284 ~~v~~--------~~l~~-l~~~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l-~~~~~~GaDi~ 352 (985)
+.++. ++|++ +++++++|++.+| |++|.+.|+++|.++|+++|+++++| +..+.+.. .....+|+|++
T Consensus 141 ~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D-ea~~~~~~~~~~~~~~~di~ 219 (423)
T 3lvm_A 141 TYLAPQRNGIIDLKELEAAMRDDTILVSIMHVNNEIGVVQDIAAIGEMCRARGIIYHVD-ATQSVGKLPIDLSQLKVDLM 219 (423)
T ss_dssp EEECCCTTSCCCHHHHHHHCCTTEEEEECCSBCTTTCBBCCHHHHHHHHHHHTCEEEEE-CTTTTTTSCCCTTTSCCSEE
T ss_pred EEeccCCCCccCHHHHHHhcCCCcEEEEEeCCCCCCccccCHHHHHHHHHHcCCEEEEE-hhhhcCCCCcChhhcCCCEE
Confidence 88764 45666 7889999999887 78999999999999999999999995 34555544 33467899999
Q ss_pred EecCccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHH
Q 001989 353 VGSAQRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAA 432 (985)
Q Consensus 353 v~s~k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa 432 (985)
+++.+|+. |++|+|+++++++....+.....|.. +..++..+|.|. ....++.++
T Consensus 220 ~~s~sK~~-----g~~g~G~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~---~~~~a~~~a 274 (423)
T 3lvm_A 220 SFSGHKIY-----GPKGIGALYVRRKPRVRIEAQMHGGG-----------------HERGMRSGTLPV---HQIVGMGEA 274 (423)
T ss_dssp EEESTTTT-----SCSSCEEEEECBTTBCCCCCSSCSSC-----------------TTTTTCCSCCCH---HHHHHHHHH
T ss_pred EechHHhc-----CCCCeEEEEEeccccCCCCccccCCc-----------------ccccccCCCCCH---HHHHHHHHH
Confidence 99983342 34458999999877666543332210 001122344443 334444444
Q ss_pred HHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCCC---cceEEEecCC--HHHHHHHHHHcCceeeee-----
Q 001989 433 MYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPF---FDTVKVKCAD--AHAIASAAYKIEMNLRVV----- 502 (985)
Q Consensus 433 ~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~~---~~~~~~~~~~--~~~v~~~L~~~GI~~~~~----- 502 (985)
+ .++ .+.++++.++..++.+++++.|+++.++++...+. ...+.|..++ ..++.+.|.+ |.+..-
T Consensus 275 l--~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~--i~v~~g~~~~~ 349 (423)
T 3lvm_A 275 Y--RIA-KEEMATEMERLRGLRNRLWNGIKDIEEVYLNGDLEHGAPNILNVSFNYVEGESLIMALKD--LAVSSGSACTS 349 (423)
T ss_dssp H--HHH-HHHHHHHHHHHHHHHHHHHHHHTTSTTEEEESCSTTBCTTEEEEEETTSCHHHHHHHTTT--EECBCCCC---
T ss_pred H--HHH-HHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCccccCCCeEEEEeCCCCHHHHHHHHhh--heeccCccccC
Confidence 3 222 22378899999999999999999983388874321 2345555554 7888888876 544321
Q ss_pred ------------------cCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 503 ------------------DSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 503 ------------------~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
..+.+|++++..+|++||++++++|.+
T Consensus 350 ~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~t~e~i~~~~~~l~~ 394 (423)
T 3lvm_A 350 ASLEPSYVLRALGLNDELAHSSIRFSLGRFTTEEEIDYTIELVRK 394 (423)
T ss_dssp --CCCCHHHHHHTCCHHHHHTEEEEECCTTCCHHHHHHHHHHHHH
T ss_pred CCccccHHHHHhCCCccccCceEEEECCCCCCHHHHHHHHHHHHH
Confidence 037899999999999999999999985
|
| >3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for structural genomics, JCSG; HET: MSE LLP; 1.70A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=99.86 E-value=9.2e-20 Score=207.41 Aligned_cols=324 Identities=14% Similarity=0.072 Sum_probs=219.4
Q ss_pred cCCCCCCCCCcHHHHHHHHhCCccccccCCChhhHhhhHHHHHHHHHHHHHHhcCCCCc-ceee-ccchHHHHHHHHHHh
Q 001989 171 IGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMS-NASL-LDEGTAAAEAMAMCN 248 (985)
Q Consensus 171 lG~g~y~~~~p~~v~~~i~~~~~~~t~~~pyq~e~sqg~l~~i~e~q~~ia~L~g~~~~-~~sl-~~~~ta~~ea~~~a~ 248 (985)
++.| |..+|+.+.+++.+.. .. .+.+ +..+...++++.+++++|.+.. +..+ ++|||.++++++.++
T Consensus 23 ~~pg--p~~~~~~v~~a~~~~~--~~---~~~~----~~~~~~~~~~~~la~~~g~~~~~~~i~~~~ggt~al~~~~~~~ 91 (376)
T 3f0h_A 23 FTVG--PVMSSEEVRAIGAEQV--PY---FRTT----EFSSTMLENEKFMLEYAKAPEGSKAVFMTCSSTGSMEAVVMNC 91 (376)
T ss_dssp CSSS--SCCCCHHHHHHHTSCC--CC---CSSH----HHHHHHHHHHHHHHHHHTCCTTCEEEEESSCHHHHHHHHHHHH
T ss_pred ecCC--CCCCcHHHHHHhcCCC--CC---CCCH----HHHHHHHHHHHHHHHHhCCCCCceEEEEcCChhHHHHHHHHhc
Confidence 3555 4568888875554321 11 1222 2346677889999999999753 4444 678898888776654
Q ss_pred hhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc--------hhhhc-cCCCEeEEEEEcC-CCCeeeccHHHH
Q 001989 249 NIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL--------KDIDY-KSGDVCGVLVQYP-GTEGEVLDYGDF 318 (985)
Q Consensus 249 ~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~--------~~l~~-l~~~t~~V~v~~p-n~~G~v~di~~I 318 (985)
. ++||+||++...+.+.... ..+...|++++.++. +++++ +++++++|++++| |.+|.+.|+++|
T Consensus 92 ~---~~gd~vi~~~~~~~~~~~~--~~~~~~g~~~~~v~~~~~~~~d~~~l~~~~~~~~~~v~~~~~~nptG~~~~l~~i 166 (376)
T 3f0h_A 92 F---TKKDKVLVIDGGSFGHRFV--QLCEIHEIPYVALKLEHGKKLTKEKLYEYDNQNFTGLLVNVDETSTAVLYDTMMI 166 (376)
T ss_dssp C---CTTCCEEEEESSHHHHHHH--HHHHHTTCCEEEEECCTTCCCCHHHHHTTTTSCCCEEEEESEETTTTEECCHHHH
T ss_pred c---CCCCeEEEEeCChhhHHHH--HHHHHcCCceEEEeCCCCCCCCHHHHHHhhccCceEEEEecccCCcceecCHHHH
Confidence 2 3889999888655443211 223345777766543 45666 7788999999987 889999999999
Q ss_pred HHHHHhCCcEEEEEecCccccCCC-CCCcccceEEEecC-ccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCC
Q 001989 319 IKNAHANGVKVVMATDLLALTILK-PPGELGADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSG 396 (985)
Q Consensus 319 ~~~a~~~galliV~a~~~~lg~l~-~~~~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g 396 (985)
+++|+++|+++++|. ..+.+... ...++|+|++++++ |+|++ +||+|++++++++.+.+.....
T Consensus 167 ~~l~~~~~~~li~D~-~~~~~~~~~~~~~~~~d~~~~s~~K~l~~-----~~G~g~~~~~~~~~~~~~~~~~-------- 232 (376)
T 3f0h_A 167 GEFCKKNNMFFVCDC-VSAFLADPFNMNECGADVMITGSQKVLAC-----PPGISVIVLAPRGVERVEKSKV-------- 232 (376)
T ss_dssp HHHHHHTTCEEEEEC-TTTTTTSCCCHHHHTCSEEEEETTTTTCC-----CSSCEEEEECHHHHHHHHTCCC--------
T ss_pred HHHHHHcCCEEEEEc-CccccCccccccccCccEEEecCcccccC-----CCceEEEEECHHHHHHhhcCCC--------
Confidence 999999999999953 44554332 23467899999998 77753 4668999999988776532111
Q ss_pred CcceeeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcc-hHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCC-C
Q 001989 397 KPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPE-GLKTIAQRVHGLAGTFALGLKKLGTVEVQGLP-F 474 (985)
Q Consensus 397 ~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~-Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~-~ 474 (985)
.++.++.....+.. ...+|.+.++.....++.+++ .++..+ |++++.++..++++++++.|+++| +++.... .
T Consensus 233 -~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~a~~~al--~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~-~~~~~~~~~ 307 (376)
T 3f0h_A 233 -RTMYFDLKDALKNQ-ERGQTPFTPAVGILLQINERL--KEIKKHGGADAEVARIASQAADFRAKIKDLP-FELVSESPA 307 (376)
T ss_dssp -CCSTTCHHHHHHHH-TTTCCSSCCCHHHHHHHHHHH--HHHHHTTHHHHHHHHHHHHHHHHHHHTTTSS-EEECCSSBB
T ss_pred -CceeecHHHHHhhc-ccCCCCCCCcHHHHHHHHHHH--HHHHHhcCHHHHHHHHHHHHHHHHHHHHHcC-CccCccccC
Confidence 11212211111111 123455554444445555554 444455 789999999999999999999997 8887432 2
Q ss_pred cceEEEecCC--HHHHHHHHHHc-Cceeeee----cCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 475 FDTVKVKCAD--AHAIASAAYKI-EMNLRVV----DSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 475 ~~~~~~~~~~--~~~v~~~L~~~-GI~~~~~----~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
...+.+..++ ..++.+.|.++ ||.++.. .++.+|++++..+|++|+|+++++|++
T Consensus 308 ~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~g~~~~~~~~lRis~~~~~t~e~i~~~~~~l~~ 369 (376)
T 3f0h_A 308 NGVTSVHPTTANAYDIFLKLKDEYGIWICPNGGEMKDTIFRVGHIGALTHEDNTTLVNAFKD 369 (376)
T ss_dssp TTEEEEEESSSCHHHHHHHHHHHSSEECEECCGGGTTTCEEEECCSSCCHHHHHHHHHHHHH
T ss_pred ceEEEEeCCCCCHHHHHHHHHHhCCEEEecCccccCCCEEEEecCCCCCHHHHHHHHHHHHH
Confidence 2234444333 88999999998 9988542 357899999999999999999999974
|
| >2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate aminotransferase, pyridoxal-5-phosphate, SAD, glycolate pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.85 E-value=2.3e-20 Score=212.74 Aligned_cols=316 Identities=11% Similarity=0.036 Sum_probs=200.3
Q ss_pred HHHHHHHHHHHHHhCCC----c-cceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCC-C-CcccHHHHHHCCcEE
Q 001989 632 EMFNNLGEWLCTITGFD----S-FSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVS-A-HGTNPATAAMCGMKI 704 (985)
Q Consensus 632 ~~~~e~~~~la~l~G~~----~-~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~-~-Hg~~~~~a~~~G~~v 704 (985)
....+++++++++++.. . ..++.++|++|+..++.++. +...++++||+++. . |......++..|+++
T Consensus 38 ~~~~~~~~~l~~~~~~~~~~~~~~v~~~~g~t~al~~~~~~~~-----~~~~~gd~vlv~~~~~~~~~~~~~~~~~g~~~ 112 (385)
T 2bkw_A 38 SIFQRVLKNTRAVFKSAAASKSQPFVLAGSGTLGWDIFASNFI-----LSKAPNKNVLVVSTGTFSDRFADCLRSYGAQV 112 (385)
T ss_dssp HHHHHHHHHHHHHTTCCGGGTCEEEEEESCTTHHHHHHHHHHS-----CTTCSCCEEEEECSSHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHHHHhCCCCCCCCceEEEcCchHHHHHHHHHHHh-----ccCCCCCeEEEEcCCcchHHHHHHHHHcCCce
Confidence 34556778888888764 2 23556777877755554431 00136788877643 2 222224456789999
Q ss_pred EEEcC-CCCCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccCHHHHHHHHHHc--CCEEEEEccccccccCCCCCC
Q 001989 705 VSVGT-DAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDN--GGQVYMDGANMNAQVGLTSPG 780 (985)
Q Consensus 705 v~v~~-d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~--galliVD~a~~~~~~~l~~pg 780 (985)
+.+|+ ++++.+|+++|++++++ +++++|++++| |++|.+. |+++|.++|+++ |+++|+|++|..+...+ ...
T Consensus 113 ~~v~~~~~~~~~d~~~l~~~l~~--~~~~~v~~~~~~nptG~~~-~l~~i~~~~~~~~~~~~li~D~a~~~~~~~~-~~~ 188 (385)
T 2bkw_A 113 DVVRPLKIGESVPLELITEKLSQ--NSYGAVTVTHVDTSTAVLS-DLKAISQAIKQTSPETFFVVDAVCSIGCEEF-EFD 188 (385)
T ss_dssp EEECCSSTTSCCCHHHHHHHHHH--SCCSEEEEESEETTTTEEC-CHHHHHHHHHHHCTTSEEEEECTTTTTTSCC-CTT
T ss_pred EEEecCCCCCCCCHHHHHHHHhc--CCCCEEEEEccCCCcCeEc-CHHHHHHHHHhhCCCCEEEEECccccCCccc-ccc
Confidence 99999 88899999999999982 27889999998 5799998 899999999999 99999999986432222 234
Q ss_pred ccCCcEEEeCCcccccccCCCCCCceEEEEEcccccC-cC------CCCccccCCCCCC---CCCCCCCCC-CCCcchhh
Q 001989 781 YIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAP-FL------PSHPVVSTGGIPA---PEKSQPLGT-IAAAPWGS 849 (985)
Q Consensus 781 ~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~-~l------p~~~~g~~~~~~~---~~~~~~~~~-i~s~~~g~ 849 (985)
.+++|++++|+||+++ |++|+|++++++++.. .+ +...++....... +....+.+. ..+. +
T Consensus 189 ~~~~d~~~~s~~K~~~-----~~~G~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 260 (385)
T 2bkw_A 189 EWGVDFALTASQKAIG-----APAGLSISLCSSRFMDYALNDSKNGHVHGYFSSLRRWTPIMENYEAGKGAYFATP---P 260 (385)
T ss_dssp TTTCSEEEEESSSTTC-----CCSCEEEEEECHHHHHHHTCHHHHCCCSCSTTCHHHHHHHHHHHHTTCCCCSSCC---C
T ss_pred ccCceEEEecCccccc-----cCCcceEEEEcHHHHHHHHhhccCCCCCceeecHHHHhhHHHhhhccCCCCCCCC---C
Confidence 5689999999999884 3468899999876554 33 1111110000000 000000000 0000 1
Q ss_pred hHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHh-hc-cCCeeecCCCC-ceeeEEEEEecCccccCCCCHHHHHHH
Q 001989 850 ALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRL-EK-HYPILFRGVNG-TVAHEFIVDLRGLKNTAGIEPEDVAKR 926 (985)
Q Consensus 850 ~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L-~~-g~~l~~~~~~~-~~~~~~iv~~~~~~~~~g~~~~~v~~~ 926 (985)
...+.++.+.+..+...|+.+..++..++++++.+.| ++ ++.+..+.+.. ...+.+.+.++ + ..++.++
T Consensus 261 ~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~------~--~~~~~~~ 332 (385)
T 2bkw_A 261 VQLINSLDVALKEILEEGLHKRWDLHREMSDWFKDSLVNGLQLTSVSRYPSNMSAHGLTAVYVA------D--PPDVIAF 332 (385)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTTTCCEESSCSSSTTBCSSCEEEECS------C--HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHhcCceecccCcccccCCceEEEecC------C--HHHHHHH
Confidence 1222223344555555567777788889999999999 76 33332111100 11223445543 2 7789999
Q ss_pred HHHCCCccCCCCC-C-CCCEEEEe-cc---CCCCHHHHHHHHccCChhHHHHhh
Q 001989 927 LMDYGFHGPTMSW-P-VPGTLMIE-PT---ESESKSWTGIVMLSSPSEKKLHRL 974 (985)
Q Consensus 927 L~~~Gi~~~~~~~-p-~~~~lris-~t---~~~t~eeId~~~~~~~l~~~~~~~ 974 (985)
|.++||.+..... + ..+.+||+ +. ..+|++|+++ +++.|+++++++
T Consensus 333 l~~~gi~v~~g~~~~~~~~~iRis~~~~~~~~~~~e~i~~--~~~~l~~~~~~~ 384 (385)
T 2bkw_A 333 LKSHGVVIAGGIHKDIGPKYIRIGHMGVTACNKNLPYMKN--CFDLIKLALQRK 384 (385)
T ss_dssp HHHTTEECBCCCCTTTGGGEEEECCCGGGTSSTTCTHHHH--HHHHHHHHTTC-
T ss_pred HHHCCeEEeCCCCcccCCCEEEEEccccccccCCHHHHHH--HHHHHHHHHHhc
Confidence 9999998754321 1 24789999 54 2579999999 778888876543
|
| >1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=4.2e-19 Score=202.09 Aligned_cols=289 Identities=15% Similarity=0.124 Sum_probs=206.0
Q ss_pred hhHHHHHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhh-cCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEE
Q 001989 207 QGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQ-KGKKKTFIIASNCHPQTIDICITRADGFDIKVVV 285 (985)
Q Consensus 207 qg~l~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~-~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~ 285 (985)
.+..+.+.++++.+|+++|.++.++.+++|+|.++++++.++... .++||+|+++...|+++...+... +..|++++.
T Consensus 40 ~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~-~~~g~~~~~ 118 (384)
T 1eg5_A 40 IEANLHMEKAREKVAKVLGVSPSEIFFTSCATESINWILKTVAETFEKRKRTIITTPIEHKAVLETMKYL-SMKGFKVKY 118 (384)
T ss_dssp HHHHHHHHHHHHHHHHHHTSCGGGEEEESCHHHHHHHHHHHHHHHTTTTCCEEEECTTSCHHHHHHHHHH-HHTTCEEEE
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHHhhhhhccCCCCEEEECCCCchHHHHHHHHH-HhcCCEEEE
Confidence 344567788999999999998888999999999888877665420 137899999999999998877532 345888888
Q ss_pred eCc--------hhhhc-cCCCEeEEEEEcC-CCCeeeccHHHHHHHHHhCC--cEEEEEecCccccCCC-CCCcccceEE
Q 001989 286 SDL--------KDIDY-KSGDVCGVLVQYP-GTEGEVLDYGDFIKNAHANG--VKVVMATDLLALTILK-PPGELGADIV 352 (985)
Q Consensus 286 v~~--------~~l~~-l~~~t~~V~v~~p-n~~G~v~di~~I~~~a~~~g--alliV~a~~~~lg~l~-~~~~~GaDi~ 352 (985)
++. ++|++ +++++++|++++| |.+|.+.|+++|.++|+++| +++++| +..++|... +..++++|++
T Consensus 119 v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~~li~D-ea~~~~~~~~~~~~~~~di~ 197 (384)
T 1eg5_A 119 VPVDSRGVVKLEELEKLVDEDTFLVSIMAANNEVGTIQPVEDVTRIVKKKNKETLVHVD-AVQTIGKIPFSLEKLEVDYA 197 (384)
T ss_dssp CCBCTTSCBCHHHHHHHCCTTEEEEEEESBCTTTCBBCCHHHHHHHHHHHCTTCEEEEE-CTTTTTTSCCCCTTTCCSEE
T ss_pred EccCCCCccCHHHHHHHhCCCCeEEEEECCCCCcccccCHHHHHHHHHhcCCceEEEEE-hhhhcCCcccCchhcCCCEE
Confidence 764 45666 7788999999988 68999999999999999999 999995 344554332 2345789999
Q ss_pred EecC-ccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHH
Q 001989 353 VGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMA 431 (985)
Q Consensus 353 v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~a 431 (985)
++|. |.++ .||+|++++++++ .+...+.++ + +..+...++.|. ....++.+
T Consensus 198 ~~s~sK~~g------~~G~G~~~~~~~~--~~~~~~~~~-----~------------~~~~~~~~~~~~---~~~~a~~~ 249 (384)
T 1eg5_A 198 SFSAHKFHG------PKGVGITYIRKGV--PIRPLIHGG-----G------------QERGLRSGTQNV---PGIVGAAR 249 (384)
T ss_dssp EEEGGGGTS------CTTCEEEEECTTS--CCCCSBCSS-----C------------TTTTTBCSCCCH---HHHHHHHH
T ss_pred EecHHHhcC------CCceEEEEEcCCC--ccccccccC-----c------------ccccccCCCCCh---HHHHHHHH
Confidence 9998 6432 2347999998765 121111110 0 000112233332 22333333
Q ss_pred HHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCC---CcceEEEecCC--HHHHHHHHHHcCceeeee---c
Q 001989 432 AMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLP---FFDTVKVKCAD--AHAIASAAYKIEMNLRVV---D 503 (985)
Q Consensus 432 a~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~---~~~~~~~~~~~--~~~v~~~L~~~GI~~~~~---~ 503 (985)
++ ... .++++++.++..++++++.+.|++.| +++..++ ....+.|..++ ..++.+.|.++||.+... .
T Consensus 250 al--~~~-~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~ 325 (384)
T 1eg5_A 250 AM--EIA-VEELSEAAKHMEKLRSKLVSGLMNLG-AHIITPLEISLPNTLSVSFPNIRGSTLQNLLSGYGIYVSTSSACT 325 (384)
T ss_dssp HH--HHH-HHTHHHHHHHHHHHHHHHHHHHHTTT-CEECSCTTSBCTTEEEEECTTCCHHHHHHHHHHTTEECBC-----
T ss_pred HH--HHH-HHhHHHHHHHHHHHHHHHHHHhCCCC-eEEeCCcccCCCCEEEEEeCCCCHHHHHHHHhhCCeEEecccccc
Confidence 33 222 34688899999999999999999876 8886432 22345555554 788999999999987541 0
Q ss_pred --------------------CCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 504 --------------------SNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 504 --------------------~~~lris~t~~~t~edId~li~aL~~ 529 (985)
.+.+|++++.++|++|+++++++|..
T Consensus 326 ~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~ 371 (384)
T 1eg5_A 326 SKDERLRHVLDAMGVDRRIAQGAIRISLCKYNTEEEVDYFLKKIEE 371 (384)
T ss_dssp -------CHHHHTTCCHHHHHHEEEEECCTTCCHHHHHHHHHHHHH
T ss_pred CCCCcchHHHHHcCCChhhcCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 26899999999999999999999974
|
| >3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.85 E-value=5.7e-20 Score=208.31 Aligned_cols=284 Identities=12% Similarity=0.078 Sum_probs=196.8
Q ss_pred HHHHHHHHHHHhCCCccc-eecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcCCCC
Q 001989 634 FNNLGEWLCTITGFDSFS-LQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAK 712 (985)
Q Consensus 634 ~~e~~~~la~l~G~~~~~-~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~d~~ 712 (985)
..++++++++++|.+... ++.++|++++..++.++. .++++|+++...|..+...++..|++++.+|.+++
T Consensus 69 ~~~lr~~la~~~~~~~~~v~~~~g~t~a~~~~~~~~~--------~~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~ 140 (363)
T 3ffh_A 69 ASSLRKEVADFYQLEEEELIFTAGVDELIELLTRVLL--------DTTTNTVMATPTFVQYRQNALIEGAEVREIPLLQD 140 (363)
T ss_dssp CHHHHHHHHHHHTCCGGGEEEESSHHHHHHHHHHHHC--------STTCEEEEEESSCHHHHHHHHHHTCEEEEEECCTT
T ss_pred hHHHHHHHHHHhCCChhhEEEeCCHHHHHHHHHHHHc--------cCCCEEEEcCCChHHHHHHHHHcCCEEEEecCCCC
Confidence 357889999999987654 455666766654444331 36789999888776666677888999999999888
Q ss_pred CCCCHHHHHHHHHhcCCCEEEEEEEcCC-CccccccCHHHHHHHHHHc--CCEEEEEccccccc-cCCCC----CCccCC
Q 001989 713 GNINIEELRKAAEANRDNLSTLMVTYPS-THGVYEEGIDEICKIIHDN--GGQVYMDGANMNAQ-VGLTS----PGYIGA 784 (985)
Q Consensus 713 g~iD~e~L~~~i~~~~~~t~~Vvv~~pn-~~G~i~~di~eI~~la~~~--galliVD~a~~~~~-~~l~~----pg~~g~ 784 (985)
+.+|+++|+++++ +++++|++++|+ ++|.+. |+++|.++++.+ |+++++|++|.... +.... ....+.
T Consensus 141 ~~~d~~~l~~~i~---~~~~~v~~~~p~nptG~~~-~~~~l~~l~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~ 216 (363)
T 3ffh_A 141 GEHDLEGMLNAID---EKTTIVWICNPNNPTGNYI-ELADIQAFLDRVPSDVLVVLDEAYIEYVTPQPEKHEKLVRTYKN 216 (363)
T ss_dssp SCCCHHHHHHHCC---TTEEEEEEESSCTTTCCCC-CHHHHHHHHTTSCTTSEEEEECTTGGGCSSCCCCCGGGGGTCTT
T ss_pred CCcCHHHHHHhcc---cCCCEEEEeCCCCCcCCCc-CHHHHHHHHHhCCCCcEEEEeCchHhhcCccccCHHHHhhcCCC
Confidence 9999999999997 789999999994 699998 899999999888 99999999985211 11101 112234
Q ss_pred cEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhc
Q 001989 785 DVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMG 864 (985)
Q Consensus 785 Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg 864 (985)
++++.+++|+|+. +|.++|++++++++.+.+.... .+.+. +.....++.+.+. .
T Consensus 217 ~i~~~s~sK~~g~----~G~r~G~~~~~~~~~~~l~~~~--------------~~~~~------~~~~~~~~~~~l~--~ 270 (363)
T 3ffh_A 217 LIITRTFSKIYGL----ASARVGYGIADKEIIRQLNIVR--------------PPFNT------TSIGQKLAIEAIK--D 270 (363)
T ss_dssp EEEEEESSSTTCC----SSCCCEEEEECHHHHHHHHHTC--------------CSCCC------BHHHHHHHHHHHH--C
T ss_pred EEEEeechhhhcC----chhceeeeecCHHHHHHHHHhC--------------CCCCC------CHHHHHHHHHHhc--C
Confidence 5778888898853 3567799999887765442110 01111 1222233334443 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCC-CCCCCC
Q 001989 865 SKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTM-SWPVPG 943 (985)
Q Consensus 865 ~eGl~~~~~~~~~~a~~l~~~L~~g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~-~~p~~~ 943 (985)
.+.+.+..++..++++++.+.|++..++...++.+. + +.+.++ .+..++.++|.++||.+... .+..++
T Consensus 271 ~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~-~--~~~~~~-------~~~~~~~~~l~~~gi~v~~g~~~~~~~ 340 (363)
T 3ffh_A 271 QAFIGECRTSNANGIKQYEAFAKRFEKVKLYPANGN-F--VLIDLG-------IEAGTIFSYLEKNGYITRSGAALGFPT 340 (363)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCTTCEECCCCSS-E--EEEECS-------SCHHHHHHHHHHTTEECEETTTTTCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCCceECCCCCe-E--EEEECC-------CCHHHHHHHHHHCCeEEEeCccCCCCC
Confidence 356677777888899999999986333322222222 2 345554 26889999999999987542 233368
Q ss_pred EEEEeccCCCCHHHHHHHHccCChhHH
Q 001989 944 TLMIEPTESESKSWTGIVMLSSPSEKK 970 (985)
Q Consensus 944 ~lris~t~~~t~eeId~~~~~~~l~~~ 970 (985)
.+||+++ |++|+|+ +++.|+++
T Consensus 341 ~iRis~~---~~~~i~~--~~~~l~~~ 362 (363)
T 3ffh_A 341 AVRITIG---KEEDNSA--VIALLEKL 362 (363)
T ss_dssp EEEEECC---CHHHHHH--HHHHHHHH
T ss_pred eEEEECC---CHHHHHH--HHHHHHHh
Confidence 9999986 9999999 66777654
|
| >2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A 2x8u_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=3.4e-20 Score=215.60 Aligned_cols=300 Identities=12% Similarity=0.039 Sum_probs=208.4
Q ss_pred hHHHHHHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEc
Q 001989 629 GYQEMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVG 708 (985)
Q Consensus 629 G~~~~~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~ 708 (985)
|..+...++++.+++++|.+. .+++++|+++++.++.+ +. .++++|+++...|+++...++..|.+++.+|
T Consensus 106 G~~~~~~~l~~~la~~~g~~~-~i~~~sGs~a~~~al~~---l~-----~~gd~vl~~~~~h~~~~~~~~~~g~~~~~~~ 176 (427)
T 2w8t_A 106 GTFHDHMEVEQALRDFYGTTG-AIVFSTGYMANLGIIST---LA-----GKGEYVILDADSHASIYDGCQQGNAEIVRFR 176 (427)
T ss_dssp CCCHHHHHHHHHHHHHHTCSE-EEEESCHHHHHHHHHHH---HS-----CTTCEEEEETTCCHHHHHHHHHSCSEEEEEC
T ss_pred CCcHHHHHHHHHHHHHhCCCc-eEEecCcHHHHHHHHHH---hc-----CCCCEEEECCcccHHHHHHHHHcCCeeEEeC
Confidence 444567789999999999874 56678888877554443 21 3678999999999888877888999999888
Q ss_pred CCCCCCCCHHHHHHHHHhcCC-CEEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCC-CC-----CC
Q 001989 709 TDAKGNINIEELRKAAEANRD-NLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGL-TS-----PG 780 (985)
Q Consensus 709 ~d~~g~iD~e~L~~~i~~~~~-~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l-~~-----pg 780 (985)
. +|+++|++++++.++ ++++|+++++ |.+|.+. |+++|.++|+++|+++|+|++|..+..+- .. .+
T Consensus 177 ~-----~d~~~le~~l~~~~~~~~~~v~~~~~~n~tG~~~-~l~~l~~l~~~~g~~li~Dea~~~~~~~~~g~~~~~~~~ 250 (427)
T 2w8t_A 177 H-----NSVEDLDKRLGRLPKEPAKLVVLEGVYSMLGDIA-PLKEMVAVAKKHGAMVLVDEAHSMGFFGPNGRGVYEAQG 250 (427)
T ss_dssp T-----TCHHHHHHHHHTSCSSSCEEEEEESEETTTTEEC-CHHHHHHHHHHTTCEEEEECTTTTTTSSTTSCCHHHHTT
T ss_pred C-----CCHHHHHHHHHhccCCCCeEEEEcCCCCCCCCcc-CHHHHHHHHHHcCCEEEEECCccccccCCCCCchHhhcC
Confidence 5 599999999984333 7899999988 5799998 89999999999999999999986332210 00 11
Q ss_pred -ccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHH
Q 001989 781 -YIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTY 859 (985)
Q Consensus 781 -~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~ 859 (985)
..++|+++.++||+|+ .|| |++++++++.+.+...... ...+. .. ++..++++.+.
T Consensus 251 ~~~~~di~~~s~sK~~g------~~g-G~v~~~~~l~~~l~~~~~~-----------~~~~~-~~----~~~~~aa~~~a 307 (427)
T 2w8t_A 251 LEGQIDFVVGTFSKSVG------TVG-GFVVSNHPKFEAVRLACRP-----------YIFTA-SL----PPSVVATATTS 307 (427)
T ss_dssp CTTCCSEEEEESSSTTC------SCC-EEEEECCTTGGGGGGTCHH-----------HHSSC-CC----CHHHHHHHHHH
T ss_pred CCcCCcEEEecchhhhc------cCC-CEEEeCHHHHHHHHHhccc-----------ccccC-CC----CHHHHHHHHHH
Confidence 2257999999999984 344 8999988777655321000 00000 11 22233333455
Q ss_pred HHHhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCC
Q 001989 860 IAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMS 938 (985)
Q Consensus 860 l~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~ 938 (985)
+..+.. +.+..++..++++++.+.|++ ++.+...+..+. .+.+.++. +.+..++.++|.++||.+....
T Consensus 308 l~~~~~--~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~---~~~~~~~~-----~~~~~~l~~~L~~~Gi~v~~~~ 377 (427)
T 2w8t_A 308 IRKLMT--AHEKRERLWSNARALHGGLKAMGFRLGTETCDSA---IVAVMLED-----QEQAAMMWQALLDGGLYVNMAR 377 (427)
T ss_dssp HHHHTS--CHHHHHHHHHHHHHHHHHHHHHTCEESCSSCCSS---EEEEEESS-----HHHHHHHHHHHHHTTEECEEEC
T ss_pred HHHHhc--CHHHHHHHHHHHHHHHHHHHHcCCcccCCCCCCC---EEEEEECC-----HHHHHHHHHHHHHCCeEEeeeC
Confidence 555432 355666788899999999987 444321210122 23455531 2346789999999999876543
Q ss_pred CC-C---CCEEEEeccCCCCHHHHHHHHccCChhHHHHhhccCC
Q 001989 939 WP-V---PGTLMIEPTESESKSWTGIVMLSSPSEKKLHRLKMGR 978 (985)
Q Consensus 939 ~p-~---~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~~~~~ 978 (985)
+| + .+.+||+++..+|++||++ +++.|++++++++.-+
T Consensus 378 ~~~~~~~~~~lRi~~~~~~t~e~i~~--~~~~l~~~l~~~~~~~ 419 (427)
T 2w8t_A 378 PPATPAGTFLLRCSICAEHTPAQIQT--VLGMFQAAGRAVGVIG 419 (427)
T ss_dssp TTTSCTTCEEEEEECCTTCCHHHHHH--HHHHHHHHHHHHTCC-
T ss_pred CCCCCCCCeEEEEEeCCCCCHHHHHH--HHHHHHHHHHHhCccc
Confidence 32 1 2589999999999999999 8899999988776543
|
| >1rv3_A Serine hydroxymethyltransferase, cytosolic; one-carbon metabolism; HET: GLY PLP; 2.40A {Oryctolagus cuniculus} SCOP: c.67.1.4 PDB: 1rv4_A* 1rvu_A* 1rvy_A* 1ls3_A* 1cj0_A* 1bj4_A* 1eji_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=1.6e-20 Score=221.83 Aligned_cols=314 Identities=15% Similarity=0.141 Sum_probs=204.5
Q ss_pred hhHHHHHHHHHHHHHHHhCCCc----cceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHH-------
Q 001989 628 QGYQEMFNNLGEWLCTITGFDS----FSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPAT------- 696 (985)
Q Consensus 628 ~G~~~~~~e~~~~la~l~G~~~----~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~------- 696 (985)
++..++.+++++++++++|.+. +++++++|++++++++.++. +++|+||+++..|+.+...
T Consensus 86 ~~~~~le~~~~~~~a~~~g~~~~~~~~~V~~~sGs~an~~~~~all--------~pGD~Vl~~~~~~~~~~~~~~~~~~~ 157 (483)
T 1rv3_A 86 EHIDELETLCQKRALQAYGLDPQCWGVNVQPYSGSPANFAVYTALV--------EPHGRIMGLDLPDGGHLTHGFMTDKK 157 (483)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCTTTEEEECCCSSHHHHHHHHHHHHT--------CTTCEEEEECGGGTCCGGGCCBCSSC
T ss_pred hhHHHHHHHHHHHHHHHhCCCcccCceEEEECCcHHHHHHHHHHhc--------CCCCEEEEecCccCcCcchhhhhccc
Confidence 4556777788899999999985 34888899877755555432 4789999999888876431
Q ss_pred -HHHCC--cEEEEEcCC-CCCCCCHHHHHHHHHhcCCCEEEEEEEcCCCccccccCHHHHHHHHHHcCCEEEEEcccccc
Q 001989 697 -AAMCG--MKIVSVGTD-AKGNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNA 772 (985)
Q Consensus 697 -a~~~G--~~vv~v~~d-~~g~iD~e~L~~~i~~~~~~t~~Vvv~~pn~~G~i~~di~eI~~la~~~galliVD~a~~~~ 772 (985)
+...| ++++.++++ +++.+|+++|++++++ +++++|++ +++..+.+. |+++|+++|+++|+++++|++|..+
T Consensus 158 ~v~~~G~~~~~v~~~~~~~~~~iD~d~le~~i~~--~~tklIi~-~~sn~~~~~-dl~~i~~ia~~~g~~livD~ah~~g 233 (483)
T 1rv3_A 158 KISATSIFFESMAYKVNPDTGYIDYDRLEENARL--FHPKLIIA-GTSCYSRNL-DYGRLRKIADENGAYLMADMAHISG 233 (483)
T ss_dssp BCSHHHHHSEEEEECBCTTTCSBCHHHHHHHHHH--HCCSEEEE-CCSSCCSCC-CHHHHHHHHHHTTCEEEEECTTTHH
T ss_pred CcccccceEEEEECccccCCCcCCHHHHHHHHhh--cCCcEEEE-eCCcCCCcC-CHHHHHHHHHHcCCEEEEEccchhc
Confidence 22334 566666666 5689999999999974 46778888 654333666 8999999999999999999998644
Q ss_pred ccC--C-CCCCccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCC--CCCCCCCCCCCCCCCCcch
Q 001989 773 QVG--L-TSPGYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTG--GIPAPEKSQPLGTIAAAPW 847 (985)
Q Consensus 773 ~~~--l-~~pg~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~--~~~~~~~~~~~~~i~s~~~ 847 (985)
+.. . ..|.. ++|++++|+||+| +||.+|++++++++.. +. ...|... +....-.....+...+++
T Consensus 234 ~~~~~~~~~p~~-~~div~~s~~K~l------~GprgG~i~~~~~~~~-~~-~~~g~~~~y~~~~~~~~~~~~~~~g~~- 303 (483)
T 1rv3_A 234 LVVAGVVPSPFE-HCHVVTTTTHKTL------RGCRAGMIFYRRGVRS-VD-PKTGKEILYNLESLINSAVFPGLQGGP- 303 (483)
T ss_dssp HHHHTSSCCGGG-TCSEEEEESSGGG------CCCSCEEEEEECSBCC---------CCBCCHHHHHHHHHTTTTCCSC-
T ss_pred ccccCCCCCCCC-CCcEEEecCcccC------CCCCceEEEEcchhhh-hc-cccCcchhhHHHHHhhhhcCCcccCCc-
Confidence 321 1 11211 6899999999998 4676699999976542 21 0000000 000000000000001111
Q ss_pred hhhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHH
Q 001989 848 GSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKR 926 (985)
Q Consensus 848 g~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~ 926 (985)
.....++..+.+..+..++++++.++..++++++.+.|++ ++.+..++. ..+.++++++. .+.+..++.+.
T Consensus 304 -~~~~iaal~~Al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~---~~~~~~v~~~~----~g~~~~~~~~~ 375 (483)
T 1rv3_A 304 -HNHAIAGVAVALKQAMTPEFKEYQRQVVANCRALSAALVELGYKIVTGGS---DNHLILVDLRS----KGTDGGRAEKV 375 (483)
T ss_dssp -CHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHTTCEEGGGSC---SSSEEEEEGGG----GTCCHHHHHHH
T ss_pred -cHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHhcCCEeccCCC---CCceEEEeccC----CCCCHHHHHHH
Confidence 0111112223455555567888888899999999999987 555543221 12235667652 25678889999
Q ss_pred HHHCCCccC----CCC-CC-CCCEEEEeccCCCC----HHHHHHHHccCChhHHHHh
Q 001989 927 LMDYGFHGP----TMS-WP-VPGTLMIEPTESES----KSWTGIVMLSSPSEKKLHR 973 (985)
Q Consensus 927 L~~~Gi~~~----~~~-~p-~~~~lris~t~~~t----~eeId~~~~~~~l~~~~~~ 973 (985)
|.+.||.+. .-. .+ ..+.+||+++..+| ++|+++ +++.|++++..
T Consensus 376 L~~~gI~v~~~~~pg~~~~~~~~~iRis~~~~~t~g~~~edi~~--~~~~l~~~l~~ 430 (483)
T 1rv3_A 376 LEACSIACNKNTCPGDKSALRPSGLRLGTPALTSRGLLEKDFQK--VAHFIHRGIEL 430 (483)
T ss_dssp HHHTTEECEEECCSSCSCTTSCCEEEEECHHHHHTTCCHHHHHH--HHHHHHHHHHH
T ss_pred HHhCCcEEecCCCCCCCcCCCCceEEeecCCcccCCCCHHHHHH--HHHHHHHHHHh
Confidence 999999875 211 11 24789999988777 999999 77888888765
|
| >3ou5_A Serine hydroxymethyltransferase, mitochondrial; structural genomics, STRU genomics consortium, SGC; 2.04A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.85 E-value=2.5e-20 Score=209.73 Aligned_cols=306 Identities=15% Similarity=0.141 Sum_probs=196.5
Q ss_pred HHHHHHHHHhCCCcc----ceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHH--------HHHCC--
Q 001989 636 NLGEWLCTITGFDSF----SLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPAT--------AAMCG-- 701 (985)
Q Consensus 636 e~~~~la~l~G~~~~----~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~--------a~~~G-- 701 (985)
-+.+..+++||++.+ ++++.||++|++++++|+. +|+|+|+..+..||.|..- ....|
T Consensus 104 la~~rak~lF~a~~A~w~VNVQP~SGs~AN~avy~All--------~PGD~ilg~~l~~GGHltHg~~~~~~~v~~sg~~ 175 (490)
T 3ou5_A 104 LCQRRALEAFDLDPAQWGVNVQPYSGSPANLAVYTALL--------QPHDRIMGLDLPDGGHLTHGYMSDVKRISATSIF 175 (490)
T ss_dssp HHHHHHHHHTTCCTTTEEEECCCSSHHHHHHHHHHHHC--------C-CCCEECBC------------------------
T ss_pred HHHHHHHHHhCCCccccCCCCCcCCHHHHHHHHHHHHc--------CCCCEEEecccCCCCcccccccCCCccccccccc
Confidence 345667899999985 8999999999988888764 5889999988888765321 12233
Q ss_pred cEEEEEcCCC-CCCCCHHHHHHHHHhcCCCEEEEEEEcCCCccccccCHHHHHHHHHHcCCEEEEEccccccc---cCCC
Q 001989 702 MKIVSVGTDA-KGNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQ---VGLT 777 (985)
Q Consensus 702 ~~vv~v~~d~-~g~iD~e~L~~~i~~~~~~t~~Vvv~~pn~~G~i~~di~eI~~la~~~galliVD~a~~~~~---~~l~ 777 (985)
++++.+++|+ ++.+|.|++++...+++|+ +|++....+.-.+ |++++.++|++.|++|++|.+|..++ +.+.
T Consensus 176 ~~~~~Y~vd~~t~~IDyd~~~~~A~~~kPk--lIi~G~SaY~r~i--d~~~~reIAd~vGA~Lm~DmAHiaGLVA~g~~p 251 (490)
T 3ou5_A 176 FESMPYKLNPKTGLIDYNQLALTARLFRPR--LIIAGTSAYARLI--DYARMREVCDEVKAHLLADMAHISGLVAAKVIP 251 (490)
T ss_dssp ----CBCEETTTTEECHHHHHHHHHHHCCS--EEEECCSSCCSCC--CHHHHHHHHHHHTCEEEEECGGGHHHHHTTSSC
T ss_pred ccccccccCCCCCcccHHHHHHHHhhcCCC--eEEECCccCcccc--CHHHHHHHHhhcccEEEechhhhhhhhcccccC
Confidence 3555556664 5899999999999876554 5666554454444 79999999999999999999996544 3355
Q ss_pred CCCccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHH
Q 001989 778 SPGYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISY 857 (985)
Q Consensus 778 ~pg~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~ 857 (985)
+|-.+ +||+++++|||| .||++|+|.+++......+..--....+..+.--...++.+.+++. ....++.|.
T Consensus 252 sP~~~-ADvVTtTTHKTL------rGPrGG~Il~~~~~~~~~~k~~~~~~~~~~kkin~aVFPg~qggp~-~h~IAAkAV 323 (490)
T 3ou5_A 252 SPFKH-ADIVTTTTHKTL------RGARSGLIFYRKGVKAVDPKTGREIPYTFEDRINFAVFPSLQGGPH-NHAIAAVAV 323 (490)
T ss_dssp CGGGT-CSEEEEESSSTT------CSCSCEEEEEECSEEEECC--CCEEECCCHHHHHHHHTTTTCSSCC-HHHHHHHHH
T ss_pred Ccccc-ceEEeccccccc------cCCCceEEEeccccccccccccchhHHHHHHHHHhhcCccccccch-HHHHHHHHH
Confidence 67665 999999999998 6899999999875322111000000000000000000111111111 112334445
Q ss_pred HHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCC
Q 001989 858 TYIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPT 936 (985)
Q Consensus 858 a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~ 936 (985)
++...+.++ ++++++++.+|++.|++.|.+ |++++.. +...|.++++++. .+++..++.+.|.+.||.++.
T Consensus 324 af~Ea~~p~-fk~Ya~qVv~NAkaLA~~L~~~G~~vvsG---gTdnHlvLvDl~~----~g~tG~~ae~~Le~agItvNk 395 (490)
T 3ou5_A 324 ALKQACTPM-FREYSLQVLKNARAMADALLERGYSLVSG---GTDNHLVLVDLRP----KGLDGARAERVLELVSITANK 395 (490)
T ss_dssp HHHHHHSHH-HHHHHHHHHHHHHHHHHHHHHTTCEEGGG---SCSSSEEEEECGG----GTCCHHHHHHHHHHTTEECEE
T ss_pred HHHHHHhHh-HHHHHHHHHHHHHHHHHHHHhCCCeeecC---CCCceEEEEeccc----cCCCHHHHHHHHHHcCcEECC
Confidence 555556655 688999999999999999987 8988754 3456778898863 477889999999999998763
Q ss_pred --CC---CC-CCCEEEEeccC----CCCHHHHHHHHccCChhHHH
Q 001989 937 --MS---WP-VPGTLMIEPTE----SESKSWTGIVMLSSPSEKKL 971 (985)
Q Consensus 937 --~~---~p-~~~~lris~t~----~~t~eeId~~~~~~~l~~~~ 971 (985)
+. .| +++.|||..++ -..++|+++ ..+.|.+++
T Consensus 396 N~iP~D~sp~~~SGiRiGTpa~TtRG~~e~dm~~--IA~~I~~~l 438 (490)
T 3ou5_A 396 NTCPGDRSAITPGGLRLGAPALTSRQFREDDFRR--VVDFIDEGV 438 (490)
T ss_dssp ECCTTCCCSSSCSEEEEESHHHHHTTCCHHHHHH--HHHHHHHHH
T ss_pred CCCCCCCCCCCCCeeEECCHHHHhCCCCHHHHHH--HHHHHHHHH
Confidence 21 12 45789998764 466788887 445555444
|
| >1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6, pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A {Pseudomonas fluorescens} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.85 E-value=6e-20 Score=212.07 Aligned_cols=308 Identities=16% Similarity=0.137 Sum_probs=201.9
Q ss_pred HHHHHHHHHHHHHhCCCccc-eecCcHHHHHHHHHHHHHHHHHhcCCCCCCE-EEEcCCCCcccHHHH----HHC--CcE
Q 001989 632 EMFNNLGEWLCTITGFDSFS-LQPNAGAAGEYAGLMVIRAYHKARGDHHRNV-CIIPVSAHGTNPATA----AMC--GMK 703 (985)
Q Consensus 632 ~~~~e~~~~la~l~G~~~~~-~~~~sGa~a~~a~l~air~~~~~~g~~~~~~-IIv~~~~Hg~~~~~a----~~~--G~~ 703 (985)
+...++++++++++|.+... ++.++|+++.+.++.+++.+.... .++++ |+++..+|+++.... +.. |++
T Consensus 71 ~~~~~l~~~la~~~g~~~~~v~~~~g~t~al~~al~~~~~~~~~~--~~gd~vii~~~~~~~~~~~~~~~~~~~~~~g~~ 148 (416)
T 1qz9_A 71 DLSERLGNRLATLIGARDGEVVVTDTTSINLFKVLSAALRVQATR--SPERRVIVTETSNFPTDLYIAEGLADMLQQGYT 148 (416)
T ss_dssp GHHHHHHHHHHTTTTCCTTSEEECSCHHHHHHHHHHHHHHHHHHH--STTCCEEEEETTSCHHHHHHHHHHHHHHCSSCE
T ss_pred HHHHHHHHHHHHHcCCCcccEEEeCChhHHHHHHHHhhccccccc--CCCCcEEEEcCCCCCchHHHHHHHHHHhcCCce
Confidence 45678999999999987533 445666666655555443221000 24555 566667787654432 233 999
Q ss_pred EEEEcCCCCCCCCHHHHHHHHHhcCCCEEEEEEEcCC-CccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCcc
Q 001989 704 IVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPS-THGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYI 782 (985)
Q Consensus 704 vv~v~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~pn-~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~ 782 (985)
++.+|+ +++|+++|+ +++++|++++|+ ++|.+. |+++|.++|+++|+++|+|++|..+...+ ....+
T Consensus 149 ~~~v~~-------~~~l~~~i~---~~~~~v~~~~~~nptG~~~-~l~~i~~l~~~~~~~li~D~a~~~g~~~~-~~~~~ 216 (416)
T 1qz9_A 149 LRLVDS-------PEELPQAID---QDTAVVMLTHVNYKTGYMH-DMQALTALSHECGALAIWDLAHSAGAVPV-DLHQA 216 (416)
T ss_dssp EEEESS-------GGGHHHHCS---TTEEEEEEESBCTTTCBBC-CHHHHHHHHHHHTCEEEEECTTTTTTSCC-CHHHH
T ss_pred EEEeCc-------HHHHHHHhC---CCceEEEEeccccCccccc-CHHHHHHHHHHcCCEEEEEccccccCcCC-Chhhc
Confidence 999885 788999887 789999999984 699998 89999999999999999999986332211 12245
Q ss_pred CCcEEEeCCcccccccCCCCCCce-EEEEEcccccCcCCCCccccCCC--CC----CCCC---CCCCCCCCCcchhhhHH
Q 001989 783 GADVCHLNLHKTFCIPHGGGGPGM-GPIGVKKHLAPFLPSHPVVSTGG--IP----APEK---SQPLGTIAAAPWGSALI 852 (985)
Q Consensus 783 g~Di~~~s~hK~l~~p~g~GGPg~-G~i~~~~~l~~~lp~~~~g~~~~--~~----~~~~---~~~~~~i~s~~~g~~~~ 852 (985)
++|++++|+||+++ +||++ |++++++++.+.+.....|+.+. .. .+.. .... ...+. +...
T Consensus 217 ~~d~~~~s~~K~l~-----~g~~~~g~l~~~~~~~~~l~~~~~g~~g~~~~~~~~~~~~~~~~~~~~-~~~~~---~~~~ 287 (416)
T 1qz9_A 217 GADYAIGCTYKYLN-----GGPGSQAFVWVSPQLCDLVPQPLSGWFGHSRQFAMEPRYEPSNGIARY-LCGTQ---PITS 287 (416)
T ss_dssp TCSEEEECSSSTTC-----CCTTCCCEEEECTTTTTTSCCSCCCGGGBCTTSCCCSSCCBCSSGGGG-CCSCC---CHHH
T ss_pred CCCEEEecCcccCC-----CCCCCeEEEEECHHHHhccCCCccccCccccccCCCCccCCCcchHHh-cCCCC---CHHH
Confidence 79999999999973 57887 99999988765554322221000 00 0000 0000 00000 1222
Q ss_pred HHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhcc-C--CeeecCCCC--ceeeEEEEEecCccccCCCCHHHHHHHH
Q 001989 853 LPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKH-Y--PILFRGVNG--TVAHEFIVDLRGLKNTAGIEPEDVAKRL 927 (985)
Q Consensus 853 ~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~g-~--~l~~~~~~~--~~~~~~iv~~~~~~~~~g~~~~~v~~~L 927 (985)
+.++.+.+..+..+++.+..++..++++++.++|++. . ++....+.+ ...+.+.+.++ +..++.+.|
T Consensus 288 ~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~--------~~~~l~~~l 359 (416)
T 1qz9_A 288 LAMVECGLDVFAQTDMASLRRKSLALTDLFIELVEQRCAAHELTLVTPREHAKRGSHVSFEHP--------EGYAVIQAL 359 (416)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHTTSCCEECSCSSGGGBCSEEEEECT--------THHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhccCCCeEEeCCCCHHHcCCEEEEecC--------CHHHHHHHH
Confidence 3334456666665677788888899999999999762 2 332222211 01222445543 367899999
Q ss_pred HHCCCccCCCCCCCCCEEEEecc-CCCCHHHHHHHHccCChhHHHHhhc
Q 001989 928 MDYGFHGPTMSWPVPGTLMIEPT-ESESKSWTGIVMLSSPSEKKLHRLK 975 (985)
Q Consensus 928 ~~~Gi~~~~~~~p~~~~lris~t-~~~t~eeId~~~~~~~l~~~~~~~~ 975 (985)
.++||.+... ..+.+||+++ ..+|++||++ +++.|++++++..
T Consensus 360 ~~~gi~~~~~---~~~~lRis~~~~~~t~~~i~~--~~~~l~~~~~~~~ 403 (416)
T 1qz9_A 360 IDRGVIGDYR---EPRIMRFGFTPLYTTFTEVWD--AVQILGEILDRKT 403 (416)
T ss_dssp HTTTEECEEE---TTTEEEEECCTTTCCHHHHHH--HHHHHHHHHHHTT
T ss_pred HhCCcEeccC---CCCeEEEeCcccCCCHHHHHH--HHHHHHHHHhccc
Confidence 9999986421 2479999998 5899999999 8899999887644
|
| >3qm2_A Phosphoserine aminotransferase; structural genomics, center for structural genomics of infec diseases, csgid; 2.25A {Salmonella enterica subsp} PDB: 1bjn_A* 1bjo_A* 3qbo_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=4.1e-20 Score=211.21 Aligned_cols=318 Identities=11% Similarity=0.042 Sum_probs=206.7
Q ss_pred ecCCCCCCCCCcHHHHHHHHhCCcccccc--CCCh----hhHhhhHHHHHHHHHHHHHHhcCCCC-cceee-ccchHHHH
Q 001989 170 FIGMGYYNTHVPPVILRNIMENPAWYTQY--TPYQ----AEIAQGRLESLLNFQTMIADLTGLPM-SNASL-LDEGTAAA 241 (985)
Q Consensus 170 ~lG~g~y~~~~p~~v~~~i~~~~~~~t~~--~pyq----~e~sqg~l~~i~e~q~~ia~L~g~~~-~~~sl-~~~~ta~~ 241 (985)
+..+| |..+|+.|.+++.. +++.| +|.. ...++...+.+.++++.+++|+|++. .++.+ +.|+|.++
T Consensus 30 l~~ag--pt~~p~~V~~a~~~---~~~~~~~n~~s~~~~~h~~~~~~~~~~~ar~~la~ll~~~~~~evif~t~~~T~a~ 104 (386)
T 3qm2_A 30 NFSSG--PAMLPAEVLKLAQQ---ELCDWHGLGTSVMEISHRGKEFIQVAEEAEQDFRDLLNIPSNYKVLFCHGGGRGQF 104 (386)
T ss_dssp ECCSS--SCCCCHHHHHHHTC---C-----------------------CCHHHHHHHHHHHTCCTTEEEEEEESCTTHHH
T ss_pred cccCC--CCCCCHHHHHHHHH---HHHhccccCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCCchHHH
Confidence 34555 44688888755432 23322 1211 11244556889999999999999965 46777 58999888
Q ss_pred HHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCch-----------hhhc-cCCCEeEEEEEc-CCC
Q 001989 242 EAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDLK-----------DIDY-KSGDVCGVLVQY-PGT 308 (985)
Q Consensus 242 ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~~-----------~l~~-l~~~t~~V~v~~-pn~ 308 (985)
++++..+ + +++|+|++....|.+. .|...++..| ++++++.+ +++. ++++|++|++++ .|.
T Consensus 105 n~ai~~l-~--~~gd~v~~~~~~~~~~--~~~~~a~~~G-~v~~v~~~~~~~G~~~~~~~~~~~l~~~t~lV~~~h~et~ 178 (386)
T 3qm2_A 105 AGVPLNL-L--GDKTTADYVDAGYWAA--SAIKEAKKYC-APQIIDAKITVDGKRAVKPMREWQLSDNAAYLHYCPNETI 178 (386)
T ss_dssp HHHHHHH-C--TTCCEEEEEESSHHHH--HHHHHHTTTS-EEEEEECEEEETTEEEECCGGGCCCCTTCSCEEECSEETT
T ss_pred HHHHHhc-c--CCCCeEEEEeCCHHHH--HHHHHHHHhC-CeEEEecCcccCCCCCCchHHHhhcCCCCcEEEEECCcCC
Confidence 7776654 2 2789987666555444 3444466778 77766433 3444 788999998876 488
Q ss_pred Ceee-ccHHHHHHHHHhCCcEEEEEecCccccCC-CCCCcccceEEEecCccccccCCCCCCcEEEEEEchhhHhcCCCc
Q 001989 309 EGEV-LDYGDFIKNAHANGVKVVMATDLLALTIL-KPPGELGADIVVGSAQRFGVPMGYGGPHAAFLATSQEYKRMMPGR 386 (985)
Q Consensus 309 ~G~v-~di~~I~~~a~~~galliV~a~~~~lg~l-~~~~~~GaDi~v~s~k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~ 386 (985)
+|++ .||++|+ +|++++||+ ..++|.+ .+..+||+ +++++||+.+| ||+|++++++++++++++.
T Consensus 179 tG~~i~pi~~i~-----~g~~~~vDa-~qs~g~~pidv~~~~~--~~~s~hK~lGP-----~G~g~l~v~~~~~~~~~~~ 245 (386)
T 3qm2_A 179 DGIAIDETPDFG-----PEVVVTADF-SSTILSAPLDVSRYGV--IYAGAQKNIGP-----AGLTLVIVREDLLGKAHES 245 (386)
T ss_dssp TTEECCCCCCCC-----TTCCEEEEC-TTTTTSSCCCGGGCSE--EEEETTTTTCC-----TTEEEEEEEGGGCSCCCTT
T ss_pred cCEecCchhhhc-----CCCEEEEEc-ccccCCCCCCccccCE--EEEecccccCC-----CccEEEEECHHHHhhhccc
Confidence 9996 9999986 799999964 4566654 34467764 56888554235 5799999999998777542
Q ss_pred eeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcc-hHHHHHHHHHHHHHHHHHHHhcCC
Q 001989 387 IVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPE-GLKTIAQRVHGLAGTFALGLKKLG 465 (985)
Q Consensus 387 ~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~-Gl~~i~~~~~~~a~~l~~~L~~~g 465 (985)
... + +++... +...+..+|+|+ .+++++.+++ .++..+ |++++.++..+++++++++|+++|
T Consensus 246 ~p~----------~-~~~~~~-~~~~~~~gTp~v---~~i~~l~~Al--~~~~~~gG~~~i~~~~~~l~~~l~~~l~~~~ 308 (386)
T 3qm2_A 246 CPS----------I-LDYTVL-NDNDSMFNTPPT---FAWYLSGLVF--KWLKAQGGVAAMHKINQQKAELLYGVIDNSD 308 (386)
T ss_dssp SCG----------G-GCHHHH-HHC-------CC---SHHHHHHHHH--HHHHHHTHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred CCc----------H-HHHHHH-hhcCCCCCCCcH---HHHHHHHHHH--HHHHHhcCHHHHHHHHHHHHHHHHHHHHHCC
Confidence 111 1 111111 111122478888 5677777776 555566 899999999999999999999987
Q ss_pred Ce-EEc-CC-CCc-ceEEEecCC---HHHHHHHHHHcCceeeee--cCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 466 TV-EVQ-GL-PFF-DTVKVKCAD---AHAIASAAYKIEMNLRVV--DSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 466 ~~-~~~-~~-~~~-~~~~~~~~~---~~~v~~~L~~~GI~~~~~--~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
+ ... .+ ... ..++|.+++ ..++.+.|.++||.++.- ..+.+|+|+..++|+||||+|+++|++
T Consensus 309 -~~~~~~~~~~rs~~iv~f~~~~~~~~~~~~~~L~~~gI~~~~g~~~~~~iRiS~~~~~t~edId~l~~~l~~ 380 (386)
T 3qm2_A 309 -FYRNDVAQANRSRMNVPFQLADNTLDKVFLEESFAAGLHALKGHRVVGGMRASIYNAMPIEGVKALTDFMID 380 (386)
T ss_dssp -SEECCBCGGGBCSSEEEEEESSGGGHHHHHHHHHHTTEECCBCCTTTCSEEEECCTTSCHHHHHHHHHHHHH
T ss_pred -CcccCCCHHHcCceEEEEECCCccccHHHHHHHHHCCCEEeCCCCCcCeEEEEcCCCCCHHHHHHHHHHHHH
Confidence 5 333 21 122 356677663 457778899999987532 126699999999999999999999974
|
| >3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.7e-19 Score=203.65 Aligned_cols=286 Identities=16% Similarity=0.112 Sum_probs=199.3
Q ss_pred HHHHHHHHHHHhCCCccce-ecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcCCCC
Q 001989 634 FNNLGEWLCTITGFDSFSL-QPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAK 712 (985)
Q Consensus 634 ~~e~~~~la~l~G~~~~~~-~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~d~~ 712 (985)
..++++++++++|.+...+ +.++|++++..++.++. .++++|+++.+.|..+...++..|++++.+|.+++
T Consensus 53 ~~~l~~~la~~~~~~~~~i~~~~g~~~a~~~~~~~l~--------~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 124 (354)
T 3ly1_A 53 ILMLGNKLAAHHQVEAPSILLTAGSSEGIRAAIEAYA--------SLEAQLVIPELTYGDGEHFAKIAGMKVTKVKMLDN 124 (354)
T ss_dssp HHHHHHHHHHHTTSCGGGEEEESHHHHHHHHHHHHHC--------CTTCEEEEESSSCTHHHHHHHHTTCEEEEECCCTT
T ss_pred hHHHHHHHHHHhCCChHHEEEeCChHHHHHHHHHHHh--------CCCCeEEECCCCchHHHHHHHHcCCEEEEecCCCC
Confidence 4578899999999876554 44556666644443321 36789999988887777778889999999999888
Q ss_pred CCCCHHHHHHHHHhcCCCEEEEEEEcCC-CccccccCHHHHHHHHHH--cCCEEEEEccccccc-cCC-CCC----Ccc-
Q 001989 713 GNINIEELRKAAEANRDNLSTLMVTYPS-THGVYEEGIDEICKIIHD--NGGQVYMDGANMNAQ-VGL-TSP----GYI- 782 (985)
Q Consensus 713 g~iD~e~L~~~i~~~~~~t~~Vvv~~pn-~~G~i~~di~eI~~la~~--~galliVD~a~~~~~-~~l-~~p----g~~- 782 (985)
+.+|+++|+++++++ +++++|++++|+ ++|.+. |++++.++++. +|+++++|+++.... .+- ..+ ...
T Consensus 125 ~~~d~~~l~~~l~~~-~~~~~v~l~~p~nptG~~~-~~~~l~~l~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~ 202 (354)
T 3ly1_A 125 WAFDIEGLKAAVAAY-SGPSIVYLVNPNNPTGTIT-PADVIEPWIASKPANTMFIVDEAYAEFVNDPRFRSISPMITQGA 202 (354)
T ss_dssp SCCCHHHHHHHHHTC-SSCEEEEEESSCTTTCCCC-CHHHHHHHHHTCCTTEEEEEECTTGGGCCCTTCCCSHHHHHTTC
T ss_pred CCCCHHHHHHHhccC-CCCCEEEEeCCCCCcCCCc-CHHHHHHHHHhCCCCeEEEEeccHHHhccccccCCHHHHhhhcC
Confidence 999999999999732 478999999985 699997 78888888877 999999999984211 110 011 122
Q ss_pred CCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHH
Q 001989 783 GADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAM 862 (985)
Q Consensus 783 g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~ 862 (985)
+.++++.|+||+|+. +|.++|++++++++.+.+.... . ..+. +.....++.+++.
T Consensus 203 ~~~i~~~s~sK~~g~----~G~r~G~~~~~~~~~~~~~~~~------------~--~~~~------~~~~~~a~~~~l~- 257 (354)
T 3ly1_A 203 ENIILLKTFSKIHAM----AGMRVGYAVAHPTVIALMGRYV------------A--GEKI------NFSGVDAALASMN- 257 (354)
T ss_dssp SSEEEEEESSSTTCC----GGGCCEEEECCHHHHHHHGGGT------------T--CSCC------CHHHHHHHHHHTT-
T ss_pred CCEEEEeeChhhccC----hhhhheeeecCHHHHHHHHHhc------------C--CCCC------CHHHHHHHHHHhc-
Confidence 556889999999854 3678899998877665443210 0 0111 1122222233333
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCCC-C
Q 001989 863 MGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSW-P 940 (985)
Q Consensus 863 lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~~-p 940 (985)
..+.+.+..++..++++++.+.|++ ++.+. .+.+. + +.+.++ + +..++.+.|.++||.+. ..+ +
T Consensus 258 -~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~--~~~~~-~--~~~~~~------~-~~~~~~~~l~~~gi~v~-g~~~~ 323 (354)
T 3ly1_A 258 -DSAFITYSKKSNDVSRQILLKALEDLKLPYL--PSEGN-F--VFHQLV------V-PLKDYQTHMADAGVLIG-RAFPP 323 (354)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHTCCBC--CCCSS-E--EEEECS------S-CHHHHHHHHHHTTEECC-CCCTT
T ss_pred -CHHHHHHHHHHHHHHHHHHHHHHHHCCCeEC--CCCce-E--EEEECC------C-CHHHHHHHHHHCCEEEe-ecCCC
Confidence 2255677777788889999999987 45442 22222 2 345554 2 67899999999999886 333 2
Q ss_pred CCCEEEEeccCCCCHHHHHHHHccCChhHHHHh
Q 001989 941 VPGTLMIEPTESESKSWTGIVMLSSPSEKKLHR 973 (985)
Q Consensus 941 ~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~ 973 (985)
.++.+||+++ +++|+++ +++.|++++++
T Consensus 324 ~~~~iRis~~---~~~~i~~--~~~~l~~~l~~ 351 (354)
T 3ly1_A 324 ADNWCRISLG---TPQEMQW--VADTMREFRKK 351 (354)
T ss_dssp CTTEEEEECC---CHHHHHH--HHHHHHHHHHT
T ss_pred CCCEEEEEcC---CHHHHHH--HHHHHHHHHHh
Confidence 4589999985 8999999 77888887764
|
| >3a9z_A Selenocysteine lyase; PLP, cytoplasm, pyridoxal phosphate, transferase; HET: PLP SLP; 1.55A {Rattus norvegicus} PDB: 3a9x_A* 3a9y_A* 3gzd_A* 3gzc_A* 2hdy_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=1.7e-19 Score=209.61 Aligned_cols=321 Identities=13% Similarity=0.127 Sum_probs=203.6
Q ss_pred hhhHHHHHHHHHHHHHHHhCCCccc-eecCcHHHHHHHHHHHHH-HHHH---hcCC---------CCCCEEEEcCCCCcc
Q 001989 627 AQGYQEMFNNLGEWLCTITGFDSFS-LQPNAGAAGEYAGLMVIR-AYHK---ARGD---------HHRNVCIIPVSAHGT 692 (985)
Q Consensus 627 ~~G~~~~~~e~~~~la~l~G~~~~~-~~~~sGa~a~~a~l~air-~~~~---~~g~---------~~~~~IIv~~~~Hg~ 692 (985)
..+..+...++++++++++|.+... ++.++|++|+..++.++. .+.. .+|. ...++|+++...|.+
T Consensus 56 ~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a~~~~~~~~~~~~~~~~~~~gd~vl~~~p~y~~~~~i~~~~~~h~s 135 (432)
T 3a9z_A 56 GRKAKDIINTARASLAKMIGGKPQDIIFTSGGTESNNLVIHSTVRCFHEQQTLQGRTVDQISPEEGTRPHFITCTVEHDS 135 (432)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCGGGEEEESCHHHHHHHHHHHHHHHHHHHHHHC------------CCCEEEEETTCCHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCCcCeEEEeCChHHHHHHHHHHHHhhhhhccccCCccccccccccccCCeEEEecCcchh
Confidence 3456677889999999999997544 555667777766666553 2211 1220 011456666666665
Q ss_pred cHHH----HHHCCcEEEEEcCCC-CCCCCHHHHHHHHHhcCCCEEEEEEEcCC-CccccccCHHHHHHHHHHcC------
Q 001989 693 NPAT----AAMCGMKIVSVGTDA-KGNINIEELRKAAEANRDNLSTLMVTYPS-THGVYEEGIDEICKIIHDNG------ 760 (985)
Q Consensus 693 ~~~~----a~~~G~~vv~v~~d~-~g~iD~e~L~~~i~~~~~~t~~Vvv~~pn-~~G~i~~di~eI~~la~~~g------ 760 (985)
+... ++..|++++.+|+++ ++.+|+++|+++++ +++++|++++|+ ++|.+. |+++|.++|+++|
T Consensus 136 ~~~~~~~~~~~~g~~v~~v~~~~~~~~~d~~~l~~~i~---~~~~~v~~~~~~nptG~~~-~~~~i~~l~~~~~~~~~~~ 211 (432)
T 3a9z_A 136 IRLPLEHLVEDQVAEVTFVPVSKVNGQVEVEDILAAVR---PTTCLVTIMLANNETGVIM-PISEISRRIKALNQIRAAS 211 (432)
T ss_dssp HHHHHHHHHHTTSCEEEEECCCTTTSSCCHHHHHHTCC---TTEEEEECCSBCTTTCBBC-CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCcEEEEEecCcccCCcCHHHHHHhcc---CCceEEEEECcccCccccc-CHHHHHHHHHhcCcccccc
Confidence 5333 234799999999976 78899999999997 789999999984 699998 8999999999999
Q ss_pred ----CEEEEEccccccccCCCCCCccCCcEEEeCCcccccccCCCCCCceEEEEEcccc-cCcCCCCccccCCCCCCCCC
Q 001989 761 ----GQVYMDGANMNAQVGLTSPGYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHL-APFLPSHPVVSTGGIPAPEK 835 (985)
Q Consensus 761 ----alliVD~a~~~~~~~l~~pg~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l-~~~lp~~~~g~~~~~~~~~~ 835 (985)
+++|+|++|..+...+ ....+++|+++.|+||++ ||++|+++++++. ...+.....++... ...
T Consensus 212 ~~~~~~livDea~~~~~~~~-~~~~~~~d~~~~s~~K~~-------g~~~G~~~~~~~~~~~~~~~~~~~~~~~---~~~ 280 (432)
T 3a9z_A 212 GLPRVLVHTDAAQALGKRRV-DVEDLGVDFLTIVGHKFY-------GPRIGALYVRGVGKLTPLYPMLFGGGQE---RNF 280 (432)
T ss_dssp TCCCCEEEEECTTTTTTSCC-CHHHHCCSEEEEEGGGTT-------CCSCEEEEETTBTTTBCCCCSCCSSCGG---GGT
T ss_pred cCCceEEEEEchhhhCCccc-ChhhcCCCEEEEehhHhc-------CCcceEEEEccccccCCcCceeecCCcc---ccc
Confidence 9999999985432111 112357999999999986 3679999999765 33332222221100 001
Q ss_pred CCCCCCCCCcchhhhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc--cCCeeecCC--C-CceeeEEEEEec
Q 001989 836 SQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK--HYPILFRGV--N-GTVAHEFIVDLR 910 (985)
Q Consensus 836 ~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~--g~~l~~~~~--~-~~~~~~~iv~~~ 910 (985)
..++.+ ...+.++.+.+..+ .+++.+..++..++++++.++|++ ++.+.+.++ . ......+.+.+.
T Consensus 281 ~~~~~~--------~~~~~a~~aal~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 351 (432)
T 3a9z_A 281 RPGTEN--------TPMIAGLGKAADLV-SENCETYEAHMRDIRDYLEERLEAEFGKRIHLNSRFPGVERLPNTCNFSIQ 351 (432)
T ss_dssp SCSCCC--------HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHGGGEEESSCCTTCCBCTTEEEEEEC
T ss_pred cCCCcC--------HHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHHhccCCcEEEeCCCCcccCCCCEEEEEeC
Confidence 111111 11122222334433 346777788888999999999976 444433222 0 011112334443
Q ss_pred CccccCCCCHHHHHHHHH----HCCCccCCC----------CCCC-----CCEEEEeccCCCCHHHHHHHHccCChhHHH
Q 001989 911 GLKNTAGIEPEDVAKRLM----DYGFHGPTM----------SWPV-----PGTLMIEPTESESKSWTGIVMLSSPSEKKL 971 (985)
Q Consensus 911 ~~~~~~g~~~~~v~~~L~----~~Gi~~~~~----------~~p~-----~~~lris~t~~~t~eeId~~~~~~~l~~~~ 971 (985)
. .+.+..++.+.|. +.|+.+... .+.+ .+.+||++...+|+||+++ +++.|++++
T Consensus 352 ~----~~~~~~~~~~~l~~i~~~~G~~~~~~~~~~~~~~l~~~g~~~~~~~~~iRis~~~~~t~eei~~--~~~~l~~~~ 425 (432)
T 3a9z_A 352 G----SQLRGYMVLAQCQTLLASVGASCHSDHEDRPSPVLLSCGIPVDVARNAVRLSVGRSTTRAEVDL--IVQDLKQAV 425 (432)
T ss_dssp S----TTCCHHHHHHHCSSEECBSSCGGGGGGTTSCCHHHHHTTCCHHHHTTEEEEECCTTCCHHHHHH--HHHHHHHHH
T ss_pred C----CCCcHHHHHHHhcCeEEeccccccCCCCCCccHHHHhcCCCccccCceEEEEcCCCCCHHHHHH--HHHHHHHHH
Confidence 1 1235666666552 123322110 0011 3789999999999999999 889999999
Q ss_pred HhhccC
Q 001989 972 HRLKMG 977 (985)
Q Consensus 972 ~~~~~~ 977 (985)
++++.+
T Consensus 426 ~~~~~~ 431 (432)
T 3a9z_A 426 NQLEGP 431 (432)
T ss_dssp HHHHSC
T ss_pred HHhcCC
Confidence 888765
|
| >3ffr_A Phosphoserine aminotransferase SERC; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP MSE P33; 1.75A {Cytophaga hutchinsonii atcc 33406} | Back alignment and structure |
|---|
Probab=99.85 E-value=5.7e-21 Score=215.71 Aligned_cols=306 Identities=11% Similarity=0.046 Sum_probs=197.3
Q ss_pred hhHHHHHHHHHHHHHHHhCCCc-c-ceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccH--HHHHHCCcE
Q 001989 628 QGYQEMFNNLGEWLCTITGFDS-F-SLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNP--ATAAMCGMK 703 (985)
Q Consensus 628 ~G~~~~~~e~~~~la~l~G~~~-~-~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~--~~a~~~G~~ 703 (985)
++..+...++++++++++|.+. . .++.++|++|+..++.++. .+ ++++....|..+. ..++..|++
T Consensus 39 ~~~~~~~~~~~~~la~~~g~~~~~~v~~~~g~t~al~~~~~~l~--------~~--~~i~~~~~~~~~~~~~~~~~~g~~ 108 (362)
T 3ffr_A 39 KKFEEVYKTASDNLKTLLELPSNYEVLFLASATEIWERIIQNCV--------EK--KSFHCVNGSFSKRFYEFAGELGRE 108 (362)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCTTEEEEEESCHHHHHHHHHHHHC--------SS--EEEEEECSHHHHHHHHHHHHTTCE
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCchHHHHHHHHhcc--------CC--cEEEEcCcHHHHHHHHHHHHhCCC
Confidence 3556778899999999999853 2 3556777776654444331 23 4444333222222 235678999
Q ss_pred EEEEcCCCCCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccCHHHHHHHHHHc-CCEEEEEccccccccCCCCCCc
Q 001989 704 IVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDN-GGQVYMDGANMNAQVGLTSPGY 781 (985)
Q Consensus 704 vv~v~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~-galliVD~a~~~~~~~l~~pg~ 781 (985)
++.++.++++.+|+++|+ ++ ++|++|++++| |++|.+. |+++|+++|+++ |+++++|++|..+.... ...
T Consensus 109 ~~~v~~~~~~~~d~~~l~--~~---~~~~~v~~~~~~nptG~~~-~l~~i~~la~~~p~~~li~D~a~~~~~~~~-~~~- 180 (362)
T 3ffr_A 109 AYKEEAAFGKGFYPADIT--VP---ADAEIICLTHNETSSGVSM-PVEDINTFRDKNKDALIFVDAVSSLPYPKF-DWT- 180 (362)
T ss_dssp EEEEECCTTCCCCGGGCC--CC---TTCCEEEEESEETTTTEEC-CHHHHTTSGGGSTTSEEEEECTTTTTSSCC-CTT-
T ss_pred eEEEecCCCCCCCHHHHh--cc---CCccEEEEEcCCCCcceeC-CHHHHHHHHHhCCCCEEEEecccccCCccc-Chh-
Confidence 999999888899999998 54 78999999998 5799998 899999999999 99999999985332111 111
Q ss_pred cCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCcccc-CCCC-CC---C-C-CC-CCCCCCCCcchhhhHHH
Q 001989 782 IGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVS-TGGI-PA---P-E-KS-QPLGTIAAAPWGSALIL 853 (985)
Q Consensus 782 ~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~-~~~~-~~---~-~-~~-~~~~~i~s~~~g~~~~~ 853 (985)
.+|++++++||+|+ |++|+|++++++++.+.+.....|+ .... .. + . .+ ..+.... +....
T Consensus 181 -~~d~~~~s~~K~~~-----~~~G~g~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~ 249 (362)
T 3ffr_A 181 -KIDSVFFSVQKCFG-----LPAGLGVWILNDRVIEKSKALLAKRKSIGTYHTIPSMLEKARVNQTPETP-----NAMNI 249 (362)
T ss_dssp -SCSEEEEETTSTTC-----CCSCCEEEEEEHHHHHHHHHHHHTTCCCCSTTSHHHHHHHHTTTCCSSCC-----CHHHH
T ss_pred -HCcEEEEecccccC-----CCCceEEEEECHHHHHHhhhccccCCCCcccccHHHHHHHhhcCCCCCCc-----hHHHH
Confidence 28999999999984 2467899998876543322110000 0000 00 0 0 00 0001111 11222
Q ss_pred HHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhccCCeeecC-CCC-ceeeEEEEEecCccccCCCCHHHHHHHHHHCC
Q 001989 854 PISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRG-VNG-TVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYG 931 (985)
Q Consensus 854 ~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~g~~l~~~~-~~~-~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~G 931 (985)
.+..+.+..+..+|+.+..++..++++++.+.|++..++.... ... .....+.+.++ + +..++.++|.++|
T Consensus 250 ~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~------~-~~~~~~~~l~~~g 322 (362)
T 3ffr_A 250 FLLGKVTGDMLQISADGIRKQTEEKAALINTYIESSKVFSFGVEDAKLRSMTTIVANTT------M-LPGEINKILEPFD 322 (362)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCSSEEESSSCGGGBCSSEEEEEES------S-CHHHHHHHHGGGT
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHccCceeccCChhhcCCceEEEecC------C-CHHHHHHHHHHCC
Confidence 2233455555566788888888999999999998632332211 101 11223445554 3 6889999999999
Q ss_pred CccCCC-CCCCCCEEEEeccCCCCHHHHHHHHccCChhHHH
Q 001989 932 FHGPTM-SWPVPGTLMIEPTESESKSWTGIVMLSSPSEKKL 971 (985)
Q Consensus 932 i~~~~~-~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~~ 971 (985)
|.+..- .....+.+||+++..++++||++ +++.|++++
T Consensus 323 i~~~~g~~~~~~~~iRis~~~~~~~e~i~~--l~~~l~~~~ 361 (362)
T 3ffr_A 323 MAVGAGYGSKKETQIRIANFPAHSLEQVHK--LVQTLKEKI 361 (362)
T ss_dssp EEEEECSGGGTTTEEEEECCTTSCHHHHHH--HHHHHHHHT
T ss_pred eEEecCccccCCCEEEEECCCCCCHHHHHH--HHHHHHHHh
Confidence 987532 11125799999999999999999 667776653
|
| >1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.85 E-value=4e-20 Score=211.62 Aligned_cols=303 Identities=15% Similarity=0.116 Sum_probs=201.2
Q ss_pred hhHHHHHHHHHHHHHHHhCCC--ccc-eecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEE
Q 001989 628 QGYQEMFNNLGEWLCTITGFD--SFS-LQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKI 704 (985)
Q Consensus 628 ~G~~~~~~e~~~~la~l~G~~--~~~-~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~v 704 (985)
+|..++.+++.+++.+.+|.+ ... ++.++|++|+..++.++. .++++|++++..|..+...++..|+++
T Consensus 67 ~g~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~~~a~~~~~~~~~--------~~gd~vl~~~~~~~~~~~~~~~~g~~~ 138 (388)
T 1j32_A 67 AGEPRLREAIAQKLQRDNGLCYGADNILVTNGGKQSIFNLMLAMI--------EPGDEVIIPAPFWVSYPEMVKLAEGTP 138 (388)
T ss_dssp TCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHHHHHC--------CTTCEEEEESSCCTHHHHHHHHTTCEE
T ss_pred CCCHHHHHHHHHHHHHhcCCCCChhhEEEcCCHHHHHHHHHHHhc--------CCCCEEEEcCCCChhHHHHHHHcCCEE
Confidence 455666777777777777753 334 445566666654444331 367899999888887777788899999
Q ss_pred EEEcCCC--CCCCCHHHHHHHHHhcCCCEEEEEEEcCC-Cccccc--cCHHHHHHHHHHcCCEEEEEccccccc-cC--C
Q 001989 705 VSVGTDA--KGNINIEELRKAAEANRDNLSTLMVTYPS-THGVYE--EGIDEICKIIHDNGGQVYMDGANMNAQ-VG--L 776 (985)
Q Consensus 705 v~v~~d~--~g~iD~e~L~~~i~~~~~~t~~Vvv~~pn-~~G~i~--~di~eI~~la~~~galliVD~a~~~~~-~~--l 776 (985)
+.+|.++ ++.+|+++|+++++ +++++|++++|+ ++|.+. .++++|.++|+++|+++++|+++.... .+ .
T Consensus 139 ~~v~~~~~~~~~~d~~~l~~~l~---~~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~ 215 (388)
T 1j32_A 139 VILPTTVETQFKVSPEQIRQAIT---PKTKLLVFNTPSNPTGMVYTPDEVRAIAQVAVEAGLWVLSDEIYEKILYDDAQH 215 (388)
T ss_dssp EEECCCGGGTTCCCHHHHHHHCC---TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCC
T ss_pred EEecCCcccCCCCCHHHHHHhcC---cCceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCC
Confidence 9999875 57799999999997 789999999994 699984 159999999999999999999984211 11 0
Q ss_pred CCCC-----ccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhH
Q 001989 777 TSPG-----YIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSAL 851 (985)
Q Consensus 777 ~~pg-----~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~ 851 (985)
.... ..+.|+++.|+||+|+.| |.++|++++++++.+.+..... ..+.+. +..
T Consensus 216 ~~~~~~~~~~~~~~~~~~s~sK~~~~~----G~r~G~~~~~~~~~~~l~~~~~------------~~~~~~------~~~ 273 (388)
T 1j32_A 216 LSIGAASPEAYERSVVCSGFAKTYAMT----GWRVGFLAGPVPLVKAATKIQG------------HSTSNV------CTF 273 (388)
T ss_dssp CCGGGSCHHHHHTEEEEEESTTTTTCT----TTCCEEEECCHHHHHHHHHHHH------------TTTCSC------CHH
T ss_pred CCHHHccccccCCEEEEeechhccCCc----ccceEEEEeCHHHHHHHHHHHh------------hcccCC------CHH
Confidence 0111 145789999999998532 4568999998776544321100 001111 112
Q ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhccCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHH-C
Q 001989 852 ILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMD-Y 930 (985)
Q Consensus 852 ~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~-~ 930 (985)
...++.++|. .+.+.+.+..++..++++++.+.|++..++....+.+..+ +.+.++. .+.+..++.++|.+ +
T Consensus 274 ~~~a~~~~l~-~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~--~~~~~~~----~~~~~~~~~~~l~~~~ 346 (388)
T 1j32_A 274 AQYGAIAAYE-NSQDCVQEMLAAFAERRRYMLDALNAMPGLECPKPDGAFY--MFPSIAK----TGRSSLDFCSELLDQH 346 (388)
T ss_dssp HHHHHHHHHH-SCSHHHHHHHHHHHHHHHHHHHHHHTCTTCBCCCCCBTTE--ECCBCGG----GTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHh-CCcHHHHHHHHHHHHHHHHHHHHHhhCCCCcccCCCeeEE--EEEecCC----CCCCHHHHHHHHHHhC
Confidence 2222334443 2345566777778888999999998621332222222221 2233321 13567899999986 6
Q ss_pred CCccCCC-CCCCCCEEEEeccCCCCHHHHHHHHccCChhHHHHhh
Q 001989 931 GFHGPTM-SWPVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRL 974 (985)
Q Consensus 931 Gi~~~~~-~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~ 974 (985)
||.+... .+..++++|+++. +++++|++ +++.|+++++++
T Consensus 347 gi~v~~g~~~~~~~~iRis~~--~~~~~i~~--~~~~l~~~l~~~ 387 (388)
T 1j32_A 347 QVATVPGAAFGADDCIRLSYA--TDLDTIKR--GMERLEKFLHGI 387 (388)
T ss_dssp CEECEEGGGGTCTTBEEEECC--SCHHHHHH--HHHHHHHHHHHH
T ss_pred CEEEeChhhhCCCCcEEEEec--CCHHHHHH--HHHHHHHHHHHh
Confidence 9987532 2323589999996 69999999 778888887654
|
| >4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.84 E-value=7.8e-19 Score=207.39 Aligned_cols=359 Identities=10% Similarity=0.013 Sum_probs=228.4
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhcCCCc---cceecCCCCCCCCCcHHHHHHHHhCCccccccCCChhhHhhhHHHHHHH
Q 001989 139 MKFSKFDEGLTESQMIEHMQKLASMNKV---YKSFIGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLN 215 (985)
Q Consensus 139 ~~lp~~~~~~se~e~~~~~~~l~~~n~~---~~~~lG~g~y~~~~p~~v~~~i~~~~~~~t~~~pyq~e~sqg~l~~i~e 215 (985)
..+| ..+.+-.++++.+.++...+.. ..+|.|.-.-+...|+.+.+.+.+ .+-.....| +.+.+..+...+
T Consensus 49 ~~~p--~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~--~~n~~~~~~--~~~p~~~~lE~~ 122 (481)
T 4e1o_A 49 ESAP--EDPDSWDSIFGDIERIIMPGVVHWQSPHMHAYYPALTSWPSLLGDMLAD--AINCLGFTW--ASSPACTELEMN 122 (481)
T ss_dssp SSCC--SSCCCHHHHHHHHHHHTGGGCCCTTSTTBCSSSCCCCCHHHHHHHHHHH--HHCCCCSST--TTCHHHHHHHHH
T ss_pred CCCC--CCCCCHHHHHHHHHHHHhcCCCCCCCCCeeEeCCCCCCHHHHHHHHHHH--HhCcccCCc--CCCcHHHHHHHH
Confidence 3566 5778999999999997544321 223444332223355555433221 111111222 345666777778
Q ss_pred HHHHHHHhcCCCCc----------ceeeccchHHHHHHHHHHhhhhc----------------CCCCEEEEcCCCChhHH
Q 001989 216 FQTMIADLTGLPMS----------NASLLDEGTAAAEAMAMCNNIQK----------------GKKKTFIIASNCHPQTI 269 (985)
Q Consensus 216 ~q~~ia~L~g~~~~----------~~sl~~~~ta~~ea~~~a~~~~~----------------~~g~~Vlv~~~~H~s~~ 269 (985)
..+++++++|.+.+ ...+++|||.+...++++.+... .++++|++++..|.++.
T Consensus 123 v~~~l~~l~g~~~~~~~~~~~~~~~g~~~~ggt~an~~al~~ar~~~~~~~~~~~~~~~~~~~~~~~~v~~s~~~H~s~~ 202 (481)
T 4e1o_A 123 VMDWLAKMLGLPEHFLHHHPSSQGGGVLQSTVSESTLIALLAARKNKILEMKTSEPDADESSLNARLVAYASDQAHSSVE 202 (481)
T ss_dssp HHHHHHHHHTCCGGGCTTCTTCBCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHTTEEEEEETTSCHHHH
T ss_pred HHHHHHHHhCCChhhhccccCCCCceEEeCchHHHHHHHHHHHHHHHHHHhhhcCcccccccccCCeEEEEcCcchHHHH
Confidence 88999999999864 45778888876665555432110 14679999999999999
Q ss_pred HHHHHhhcCCCeEEEEeCc--------hhhhc-cCCC------EeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEe
Q 001989 270 DICITRADGFDIKVVVSDL--------KDIDY-KSGD------VCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMAT 333 (985)
Q Consensus 270 ~~~~~~a~~~gi~v~~v~~--------~~l~~-l~~~------t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a 333 (985)
+.++. .|++++.++. ++|++ +.++ +.+|+++.+ |.+|.++|+++|+++||++|++++||+
T Consensus 203 ~~~~~----~g~~~~~v~~~~~~~~d~~~Le~~i~~~~~~g~~~~~vv~~~~~t~~G~id~l~~I~~la~~~~~~lhvDa 278 (481)
T 4e1o_A 203 KAGLI----SLVKMKFLPVDDNFSLRGEALQKAIEEDKQRGLVPVFVCATLGTTGVCAFDCLSELGPICAREGLWLHIDA 278 (481)
T ss_dssp HHHHH----HTCEEEEECCCTTSCCCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHHTCEEEEEC
T ss_pred HHHHh----CCCceEEEEcCCCCcCCHHHHHHHHHHHHhCCCCcEEEEEecCCCCCcCcCCHHHHHHHHHHcCCeEEeeh
Confidence 98753 3778888764 35665 5432 677888876 679999999999999999999999964
Q ss_pred cCccccCCCCC----Cccc---ceEEEecC-ccccccCCCCCCcEEEEEEchh-hHh-cCC--CceeeeeecCCCCccee
Q 001989 334 DLLALTILKPP----GELG---ADIVVGSA-QRFGVPMGYGGPHAAFLATSQE-YKR-MMP--GRIVGVSIDSSGKPALR 401 (985)
Q Consensus 334 ~~~~lg~l~~~----~~~G---aDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~-~~~-~lp--~~~vG~t~d~~g~~~~~ 401 (985)
.++.+.+..+ ...| +|.++.++ |+|+.|. ++|+++++++ +++ .+. +..+.. ....+...+
T Consensus 279 -A~g~~~~~~~~~~~~~~gi~~aDsi~~~~hK~l~~p~-----g~g~l~~~~~~~l~~~~~~~~~yl~~-~~~~~~~~~- 350 (481)
T 4e1o_A 279 -AYAGTAFLCPEFRGFLKGIEYADSFTFNPSKWMMVHF-----DCTGFWVKDKYKLQQTFSVNPIYLRH-ANSGVATDF- 350 (481)
T ss_dssp -TTGGGGGGSGGGGGGGTTGGGCSEEEECHHHHSSCCS-----SCEEEEESBHHHHHTTTCCCCGGGCC-TTTTTSCCG-
T ss_pred -hhHHHHHhChhhHHHhcCcccCCEEEEChHHhcCCCC-----ceEEEEEeCHHHHHHHhcCCchhccC-cccCCCCCc-
Confidence 3333322111 1124 59999999 7787774 3567788764 332 221 111110 000000000
Q ss_pred eecccccccccccccCCCccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCCCcceEEEe
Q 001989 402 VAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDTVKVK 481 (985)
Q Consensus 402 l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~~~~~~~~~ 481 (985)
. +..-+.++. ....++.++ +..+|.+|++++.++..++++++++.|+++++++++.++..+.+.|+
T Consensus 351 -----~--~~~~~~~r~-----~~~l~~~~a--l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~~~~~~~~~v~f~ 416 (481)
T 4e1o_A 351 -----M--HWQIPLSRR-----FRSVKLWFV--IRSFGVKNLQAHVRHGTEMAKYFESLVRNDPSFEIPAKRHLGLVVFR 416 (481)
T ss_dssp -----G--GGSSSSCCC-----CTHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTEECCSCCCSSEEEEE
T ss_pred -----c--cccccCCCC-----ccHHHHHHH--HHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCceeEEEEE
Confidence 0 000011111 112233333 35678899999999999999999999999844999866666777777
Q ss_pred cCC----HHHHHHHHHHcCc-eeeee-c--CCeEEEEeccC-CCHHHHHHHHHHHhC
Q 001989 482 CAD----AHAIASAAYKIEM-NLRVV-D--SNTVTASFDET-TTLEDVDKLFIVFAG 529 (985)
Q Consensus 482 ~~~----~~~v~~~L~~~GI-~~~~~-~--~~~lris~t~~-~t~edId~li~aL~~ 529 (985)
.++ ..++.++|.++|+ .+... . ...+|++++.. +|++||++++++|.+
T Consensus 417 ~~~~~~~~~~l~~~L~~~g~~~~~~~~~~g~~~lR~~~~~~~tt~~di~~~~~~i~~ 473 (481)
T 4e1o_A 417 LKGPNSLTENVLKEIAKAGRLFLIPATIQDKLIIRFTVTSQFTTRDDILRDWNLIRD 473 (481)
T ss_dssp ESSCHHHHHHHHHHHHHHCSSBCEEEEETTEEEEEEECCCTTCCHHHHHHHHHHHHH
T ss_pred eCCchHHHHHHHHHHHhCCeEEEEeeEECCEEEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 643 6789999998885 43322 1 25799998865 589999999999974
|
| >2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; HET: PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=1.2e-19 Score=204.00 Aligned_cols=318 Identities=14% Similarity=0.081 Sum_probs=216.2
Q ss_pred cCCCCCCCCCcHHHHHHHHhCCccccccCCChhhHhhhHHHHHHHHHHHHHHhcCCC--CcceeeccchHHHHHHHHHHh
Q 001989 171 IGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLP--MSNASLLDEGTAAAEAMAMCN 248 (985)
Q Consensus 171 lG~g~y~~~~p~~v~~~i~~~~~~~t~~~pyq~e~sqg~l~~i~e~q~~ia~L~g~~--~~~~sl~~~~ta~~ea~~~a~ 248 (985)
++.|.+ ..|+.+.+++.+.- .. + +. ....+...++++.+|+++|.+ ..++.+++|+|.+++.++.++
T Consensus 4 ~~~gp~--~~~~~v~~a~~~~~---~~-~-~~----~~~~~~~~~l~~~la~~~g~~~~~~~v~~t~g~t~a~~~~~~~~ 72 (353)
T 2yrr_A 4 LTPGPT--PIPERVQKALLRPM---RG-H-LD----PEVLRVNRAIQERLAALFDPGEGALVAALAGSGSLGMEAGLANL 72 (353)
T ss_dssp CSSSSC--CCCHHHHGGGGSCC---CC-T-TC----HHHHHHHHHHHHHHHHHHCCCTTCEEEEESSCHHHHHHHHHHTC
T ss_pred CCCCCC--CCCHHHHHHHhccc---cc-c-cC----HHHHHHHHHHHHHHHHHhCCCCCCceEEEcCCcHHHHHHHHHHh
Confidence 456643 47777765544322 21 1 11 223466778999999999986 567888899997776655443
Q ss_pred hhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc--------hhhhc-cCC-CEeEEEEEcC-CCCeeeccHHH
Q 001989 249 NIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL--------KDIDY-KSG-DVCGVLVQYP-GTEGEVLDYGD 317 (985)
Q Consensus 249 ~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~--------~~l~~-l~~-~t~~V~v~~p-n~~G~v~di~~ 317 (985)
. + |+|++++..|+++ .+...++..|++++.++. +++++ +++ ++++|++++| |.+|.+.|+++
T Consensus 73 --~--~-d~vl~~~~~~~~~--~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~ 145 (353)
T 2yrr_A 73 --D--R-GPVLVLVNGAFSQ--RVAEMAALHGLDPEVLDFPPGEPVDPEAVARALKRRRYRMVALVHGETSTGVLNPAEA 145 (353)
T ss_dssp --S--C-CCEEEEECSHHHH--HHHHHHHHTTCCEEEEECCTTSCCCHHHHHHHHHHSCCSEEEEESEETTTTEECCHHH
T ss_pred --c--C-CcEEEEcCCCchH--HHHHHHHHcCCceEEEeCCCCCCCCHHHHHHHHHhCCCCEEEEEccCCCcceecCHHH
Confidence 1 3 8899999999986 233333456777777653 45555 655 7899999987 78999999999
Q ss_pred HHHHHHhCCcEEEEEecCccccCCC-CCCcccceEEEecC-ccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCC
Q 001989 318 FIKNAHANGVKVVMATDLLALTILK-PPGELGADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSS 395 (985)
Q Consensus 318 I~~~a~~~galliV~a~~~~lg~l~-~~~~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~ 395 (985)
|.++|+++|+++++| +..+++... +..++|+|++++++ |+++ |+||+|++++++++++.+.. ..+
T Consensus 146 i~~l~~~~~~~li~D-~a~~~~~~~~~~~~~~~d~~~~s~~K~~~-----~~~g~G~~~~~~~~~~~l~~-~~~------ 212 (353)
T 2yrr_A 146 IGALAKEAGALFFLD-AVTTLGMLPFSMRAMGVDYAFTGSQKCLS-----APPGLAPIAASLEARKAFTG-KRG------ 212 (353)
T ss_dssp HHHHHHHHTCEEEEE-CTTTTTTSCCCHHHHTCSEEECCTTSTTC-----CCSSCEEEEECHHHHHHCCC-CSC------
T ss_pred HHHHHHHcCCeEEEE-cCcccccccccccccCceEEEecCccccc-----CCCceEEEEECHHHHHHhcc-CCC------
Confidence 999999999999995 344555332 22457899999998 6674 34567999999998877731 111
Q ss_pred CCcceeeeccc--ccccccccccCCCccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCC
Q 001989 396 GKPALRVAMQT--REQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLP 473 (985)
Q Consensus 396 g~~~~~l~l~t--re~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~ 473 (985)
+.+.... ..+..++..+|.|. ....++.+++ ..+..+|++++.++..++++++++.|+++| +++..++
T Consensus 213 ----~~~~~~~~~~~~~~~~~~~~~~~---~~~~a~~~al--~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~ 282 (353)
T 2yrr_A 213 ----WYLDLARVAEHWERGGYHHTTPV---LLHYALLEAL--DLVLEEGVAARERRAREVYAWVLEELKARG-FRPYPKA 282 (353)
T ss_dssp ----STTCHHHHHHHHTTCCCSSCCCH---HHHHHHHHHH--HHHHHHCHHHHHHHHHHHHHHHHHHHHHTT-CEESCSS
T ss_pred ----ccccHHHHhhhhhcCCCCCCCCH---HHHHHHHHHH--HHHHHhhHHHHHHHHHHHHHHHHHHHHHCC-CccccCc
Confidence 1111000 00101222344443 2333333443 444456789999999999999999999986 8887532
Q ss_pred --CcceEEEecC-C--HHHHHHHHHHcCceeeee----cCCeEEEEeccCCCHHHHH-HHHHHHhC
Q 001989 474 --FFDTVKVKCA-D--AHAIASAAYKIEMNLRVV----DSNTVTASFDETTTLEDVD-KLFIVFAG 529 (985)
Q Consensus 474 --~~~~~~~~~~-~--~~~v~~~L~~~GI~~~~~----~~~~lris~t~~~t~edId-~li~aL~~ 529 (985)
....+.+..+ + ..++.+.|.++||.+... .++.+|++++.++|++|++ +++++|++
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~iRi~~~~~~~~~~~~~~~~~~l~~ 348 (353)
T 2yrr_A 283 SPLPTVLVVRPPEGVDADRLVRALYAEGVAVAGGIGPTRGQVLRLGLMGEGARREAYQAFLKALDR 348 (353)
T ss_dssp SBCTTEEEEECCTTCCHHHHHHHHHHTTEECEECCGGGTTTCEEEECSGGGSCHHHHHHHHHHHHH
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHCCEEEeCCccccCCCeEEEecCccCCHHHHHHHHHHHHHH
Confidence 1223456664 2 889999999999988642 2578999999999999999 99999873
|
| >2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=1e-19 Score=208.28 Aligned_cols=297 Identities=13% Similarity=0.047 Sum_probs=207.3
Q ss_pred HHHHHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc
Q 001989 209 RLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL 288 (985)
Q Consensus 209 ~l~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~ 288 (985)
..+.+.++++.+|+++|.++.++.+++|+|.+++.++.++ + ++||+|++++..|+++. +..+++..|++++.++.
T Consensus 40 ~~~~~~~l~~~la~~~g~~~~~v~~t~g~t~a~~~~~~~~-~--~~gd~Vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~ 114 (392)
T 2z9v_A 40 FQLLYEKVVDKAQKAMRLSNKPVILHGEPVLGLEAAAASL-I--SPDDVVLNLASGVYGKG--FGYWAKRYSPHLLEIEV 114 (392)
T ss_dssp HHHHHHHHHHHHHHHTTCSSCCEEESSCTHHHHHHHHHHH-C--CTTCCEEEEESSHHHHH--HHHHHHHHCSCEEEEEC
T ss_pred HHHHHHHHHHHHHHHhCCCCCEEEEeCCchHHHHHHHHHh-c--CCCCEEEEecCCcccHH--HHHHHHHcCCceEEeeC
Confidence 4566778999999999998778889999998888777654 2 38899999999999873 22223334667766643
Q ss_pred --------hhhhc-c--CCCEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCC-CCCcccceEEEec
Q 001989 289 --------KDIDY-K--SGDVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILK-PPGELGADIVVGS 355 (985)
Q Consensus 289 --------~~l~~-l--~~~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~-~~~~~GaDi~v~s 355 (985)
++|++ + ++++++|++++| |.+|.+.|+++|.++|+++|+++++| +.++.|... ...++|+|++++|
T Consensus 115 ~~~~~~d~~~l~~~l~~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D-~a~~~g~~~~~~~~~~~d~~~~s 193 (392)
T 2z9v_A 115 PYNEAIDPQAVADMLKAHPEITVVSVCHHDTPSGTINPIDAIGALVSAHGAYLIVD-AVSSFGGMKTHPEDCKADIYVTG 193 (392)
T ss_dssp CTTSCCCHHHHHHHHHHCTTCCEEEEESEEGGGTEECCHHHHHHHHHHTTCEEEEE-CTTTBTTBSCCGGGGTCSEEEEC
T ss_pred CCCCCCCHHHHHHHHhcCCCCcEEEEeccCCCCceeccHHHHHHHHHHcCCeEEEE-cccccCCcccccccccceEEEec
Confidence 45665 6 568999999987 78999999999999999999999995 345555432 2345789999999
Q ss_pred C-ccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeeccc--cc-ccccccccCCCccchhHHHHHHH
Q 001989 356 A-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQT--RE-QHIRRDKATSNICTAQALLANMA 431 (985)
Q Consensus 356 ~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~t--re-~~irre~atsni~t~~~l~a~~a 431 (985)
. |+++ |+||+|++++++++++++.....| .|. +.+.+.. .. +..++..+|.|+ ....++.+
T Consensus 194 ~sK~~~-----~~~g~G~l~~~~~~~~~l~~~~~g-----~~~--~~~~~~~~~~~~~~~~~~~~~~~~---~~~~a~~~ 258 (392)
T 2z9v_A 194 PNKCLG-----APPGLTMMGVSERAWAKMKANPLA-----PRA--SMLSIVDWENAWSRDKPFPFTPSV---SEINGLDV 258 (392)
T ss_dssp SSSTTC-----CCSCCEEEEECHHHHHHHHTCTTS-----CCS--STTCSGGGTTTTSTTSCCSSCCCH---HHHHHHHH
T ss_pred Cccccc-----CCCceeEEEECHHHHHHhhhccCC-----CCc--eeccHHHHHhhhcccCCCCCCCCH---HHHHHHHH
Confidence 8 6564 445679999999887655221110 000 1111100 00 111223344444 23333444
Q ss_pred HHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcC-CC---CcceEEEecC-C--HHHHHHHHHHc-Cceeeee-
Q 001989 432 AMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQG-LP---FFDTVKVKCA-D--AHAIASAAYKI-EMNLRVV- 502 (985)
Q Consensus 432 a~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~-~~---~~~~~~~~~~-~--~~~v~~~L~~~-GI~~~~~- 502 (985)
++ ..+...|++++.++..++++++++.|+++| +++.. .. ....+.+..+ + ..++.++|.++ ||.+...
T Consensus 259 al--~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gi~v~~g~ 335 (392)
T 2z9v_A 259 AL--DLYLNEGPEAVWARHALTAKAMRAGVTAMG-LSVWAASDSIASPTTTAVRTPDGVDEKALRQAARARYGVVFSSGR 335 (392)
T ss_dssp HH--HHHHHHCHHHHHHHHHHHHHHHHHHHHHTT-CCBSSSSGGGBCTTEEEEECCTTCCHHHHHHHHHHHHCEECEECC
T ss_pred HH--HHHHhccHHHHHHHHHHHHHHHHHHHHHcC-CeeccCCccccCCceEEEECCCCCCHHHHHHHHHhcCCEEEecCC
Confidence 43 444455788999999999999999999886 87764 21 2234566664 2 78899999987 9988643
Q ss_pred ---cCCeEEEEecc-CCCHHHHHHHHHHHhC
Q 001989 503 ---DSNTVTASFDE-TTTLEDVDKLFIVFAG 529 (985)
Q Consensus 503 ---~~~~lris~t~-~~t~edId~li~aL~~ 529 (985)
.++.+|+++.. ++|++|+++++++|..
T Consensus 336 ~~~~~~~lRi~~~~~~~~~~~i~~~~~~l~~ 366 (392)
T 2z9v_A 336 GETLGKLTRIGHMGPTAQPIYAIAALTALGG 366 (392)
T ss_dssp GGGTTTEEEEECCGGGCSHHHHHHHHHHHHH
T ss_pred CCCCCCeEEEeCcccccCHHHHHHHHHHHHH
Confidence 25789999755 8999999999999974
|
| >2a7v_A Serine hydroxymethyltransferase; structural genomics, structural genomics consortium, SGC; 2.04A {Homo sapiens} PDB: 3ou5_A | Back alignment and structure |
|---|
Probab=99.84 E-value=3e-20 Score=218.36 Aligned_cols=303 Identities=16% Similarity=0.129 Sum_probs=183.3
Q ss_pred HHHHHHHHHHHhCCCc----cceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccH---H-----HHHHCC
Q 001989 634 FNNLGEWLCTITGFDS----FSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNP---A-----TAAMCG 701 (985)
Q Consensus 634 ~~e~~~~la~l~G~~~----~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~---~-----~a~~~G 701 (985)
..++++++++++|.+. ++++++||++|+.++++++. ++||+||+++..|+.|. . .+...|
T Consensus 102 E~~a~~~~a~l~g~~~~~~~~~v~~~sGt~An~~al~al~--------~pGD~Vl~~~~~h~g~l~h~~~~~~~~i~~~g 173 (490)
T 2a7v_A 102 ELLCQRRALEAFDLDPAQWGVNVQPYSGSPANLAVYTALL--------QPHDRIMGLDLPDGGHLTHGYMSDVKRISATS 173 (490)
T ss_dssp HHHHHHHHHHHTTCCTTTEEEECCCSSHHHHHHHHHHHHC--------CSCEECCC------------------------
T ss_pred HHHHHHHHHHHcCCCcccCceEEeCCchHHHHHHHHHHHc--------CCCCEecccCccccccccchhhhcchhHHHcC
Confidence 3356699999999987 46778899988866665542 47899999988887642 2 123455
Q ss_pred cE--EEEEcCC-CCCCCCHHHHHHHHHhcCCCEEEEEEEcCCCccccccCHHHHHHHHHHcCCEEEEEcccccccc--C-
Q 001989 702 MK--IVSVGTD-AKGNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQV--G- 775 (985)
Q Consensus 702 ~~--vv~v~~d-~~g~iD~e~L~~~i~~~~~~t~~Vvv~~pn~~G~i~~di~eI~~la~~~galliVD~a~~~~~~--~- 775 (985)
.. ++.++++ ++|.+|+++|++++.+ .++++|+++.|++ |... |+++|+++|+++|++||+|++|..++. +
T Consensus 174 ~~~~~~~~~vd~~~~~iD~d~le~~l~~--~~~klIi~~~s~~-~~~~-dl~~i~~ia~~~g~~livD~Ah~~glv~~g~ 249 (490)
T 2a7v_A 174 IFFESMPYKLNPKTGLIDYNQLALTARL--FRPRLIIAGTSAY-ARLI-DYARMREVCDEVKAHLLADMAHISGLVAAKV 249 (490)
T ss_dssp -------CCBCTTTCSBCHHHHHHHHHH--HCCSEEEECCSSC-CSCC-CHHHHHHHHHHTTCEEEEECGGGHHHHHTTS
T ss_pred CeEEEEecccccccCCcCHHHHHHHHhh--cCCcEEEEcCCCC-CCcc-cHHHHHHHHHHcCCEEEEccccccccccCCc
Confidence 43 4444555 4689999999999974 2456777766543 5565 899999999999999999999864432 1
Q ss_pred CCCCCccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCC-------CccccCCCCCCCCCCCCCCCCCCcchh
Q 001989 776 LTSPGYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPS-------HPVVSTGGIPAPEKSQPLGTIAAAPWG 848 (985)
Q Consensus 776 l~~pg~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~-------~~~g~~~~~~~~~~~~~~~~i~s~~~g 848 (985)
...|- .++|++++++||+| +||.+|++++++++...-+. .+... .+ . ...+.+.+++.
T Consensus 250 ~~~~~-~~aDiv~~S~hK~l------~Gp~GG~i~~~~~~~~~~~~~~~~~~~~l~~~----i~--~-~~~~g~qggp~- 314 (490)
T 2a7v_A 250 IPSPF-KHADIVTTTTHKTL------RGARSGLIFYRKGVKAVDPKTGREIPYTFEDR----IN--F-AVFPSLQGGPH- 314 (490)
T ss_dssp SCCGG-GTCSEEEEESSGGG------CSCSCEEEEEECSEEEEETTTEEEEECCCHHH----HH--H-HHTTTTCCSCC-
T ss_pred CCCCC-CCCCEEEECCcccC------ccccchheeeccchhcccccccchhhHHHHHH----HH--H-HhcccCCCCch-
Confidence 12232 26999999999998 46777999988753210000 00000 00 0 00000100110
Q ss_pred hhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHH
Q 001989 849 SALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRL 927 (985)
Q Consensus 849 ~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L 927 (985)
....++.+.+ +..+..+.++++.++..+++++|++.|++ |+++...+ ...|.+.++++. .+.+..++.+.|
T Consensus 315 ~~~iaAla~A-l~~~~~~~~~~~~~~~~~na~~L~~~L~~~G~~v~~~~---t~t~lv~vdl~~----~g~~~~~~~~~L 386 (490)
T 2a7v_A 315 NHAIAAVAVA-LKQACTPMFREYSLQVLKNARAMADALLERGYSLVSGG---TDNHLVLVDLRP----KGLDGARAERVL 386 (490)
T ss_dssp HHHHHHHHHH-HHHHHSHHHHHHHHHHHHHHHHHHHHHHHTTCEEGGGS---CSSSEEEEECTT----TTCCHHHHHHHH
T ss_pred HHHHHHHHHH-HHHHhhhhHHHHHHHHHHHHHHHHHHHHHcCcEEecCC---CCCeEEEEEeCC----CCCCHHHHHHHH
Confidence 1111122222 23322234577778899999999999987 66664322 123446677652 356788999999
Q ss_pred HHCCCccCCC-----CCC-CCCEEEEecc----CCCCHHHHHHHHccCChhHHHHh
Q 001989 928 MDYGFHGPTM-----SWP-VPGTLMIEPT----ESESKSWTGIVMLSSPSEKKLHR 973 (985)
Q Consensus 928 ~~~Gi~~~~~-----~~p-~~~~lris~t----~~~t~eeId~~~~~~~l~~~~~~ 973 (985)
.+.||.+... ..| +++.||++.+ ...+++|+++ +++.|.+++..
T Consensus 387 ~~~GI~v~~~~~p~d~~p~~~~~iRig~~a~t~~g~~~~d~~~--~~~~i~~~l~~ 440 (490)
T 2a7v_A 387 ELVSITANKNTCPGDRSAITPGGLRLGAPALTSRQFREDDFRR--VVDFIDEGVNI 440 (490)
T ss_dssp HHTTEECEEECCTTCCCSSSCSEEEEESHHHHHTTCCHHHHHH--HHHHHHHHHHH
T ss_pred HhCCeEEecCccCCCCCCCCCCceEecccccccCCCCHHHHHH--HHHHHHHHHHh
Confidence 9999997531 122 3588999664 3578999999 66777777653
|
| >3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism, transferase; HET: PLP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.9e-20 Score=214.72 Aligned_cols=294 Identities=13% Similarity=0.156 Sum_probs=205.5
Q ss_pred HHHHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcCCC
Q 001989 632 EMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDA 711 (985)
Q Consensus 632 ~~~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~d~ 711 (985)
+...++++++++++|.+. .++.++|++|++.++.++ .+++++|+++.+.|+.+...++..|.+++.+|.
T Consensus 88 ~~~~~l~~~la~~~~~~~-~i~~~sGt~a~~~~l~~~--------~~~gd~v~~~~~~~~~~~~~~~~~g~~~~~~~~-- 156 (399)
T 3tqx_A 88 TIHKELEKDISEFLGTDD-TILYSSCFDANGGLFETL--------LGPEDAIISDELNHASIIDGIRLCKAQRYRYKN-- 156 (399)
T ss_dssp HHHHHHHHHHHHHHTCSE-EEEESCHHHHHHTTHHHH--------CCTTCEEEEETTCCHHHHHHHHSCCSEEEEECT--
T ss_pred hHHHHHHHHHHHHHCCCc-EEEECchHHHHHHHHHHh--------cCCCCEEEECCcccHHHHHHHHHcCCceeEeCC--
Confidence 456789999999999874 566677887765444332 147789999999998888888899999999986
Q ss_pred CCCCCHHHHHHHHHhcCC---CEEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCCC-C--CC----
Q 001989 712 KGNINIEELRKAAEANRD---NLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLT-S--PG---- 780 (985)
Q Consensus 712 ~g~iD~e~L~~~i~~~~~---~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~-~--pg---- 780 (985)
+|+++|++++++..+ ++++|++++| |++|.+. |+++|.++|+++|+++|+|+++..+..+.. . ..
T Consensus 157 ---~d~~~l~~~l~~~~~~~~~~~~v~~~~~~nptG~~~-~l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~ 232 (399)
T 3tqx_A 157 ---NAMGDLEAKLKEADEKGARFKLIATDGVFSMDGIIA-DLKSICDLADKYNALVMVDDSHAVGFIGENGRGTPEYCGV 232 (399)
T ss_dssp ---TCTTHHHHHHHHHHTTTCSSEEEEEESEETTTTEEC-CHHHHHHHHHHTTCEEEEECTTTTTTSSTTSCCHHHHHTC
T ss_pred ---CCHHHHHHHHHhhhccCCCceEEEEeCCCCCCCCcC-CHHHHHHHHHHcCCEEEEECCccccccCCCCCchHHhhCC
Confidence 488899999974322 7999999998 5799998 899999999999999999999853321111 0 00
Q ss_pred ccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHH
Q 001989 781 YIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYI 860 (985)
Q Consensus 781 ~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l 860 (985)
..+.|+++.|+||+|+ |+.+|++++++++.+.+....... ..++.. +...++++.+.+
T Consensus 233 ~~~~di~~~s~sK~~~------g~~gG~~~~~~~~~~~~~~~~~~~----------~~~~~~------~~~~~~~~~~~l 290 (399)
T 3tqx_A 233 ADRVDILTGTLGKALG------GASGGYTSGHKEIIEWLRNRSRPY----------LFSNTV------APVIVATSLKVL 290 (399)
T ss_dssp TTCCSEEEEESSSSSC------SSCCEEEEECHHHHHHHHHHCHHH----------HSSCCC------CHHHHHHHHHHH
T ss_pred CCCCcEEEecchHhcc------cCceEEEEcCHHHHHHHHHhCcce----------eccCCC------cHHHHHHHHHHH
Confidence 1257999999999984 233399999887665442110000 000111 122233334445
Q ss_pred HHhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCCC
Q 001989 861 AMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSW 939 (985)
Q Consensus 861 ~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~~ 939 (985)
..+. +++.+..++..++++++.+.|++ ++.+. .+.+.+ +.+.++. +.+..++.++|.++||.+....+
T Consensus 291 ~~~~-~~~~~~~~~~~~~~~~l~~~L~~~g~~~~--~~~~~~---~~~~~~~-----~~~~~~~~~~l~~~gi~v~~~~~ 359 (399)
T 3tqx_A 291 ELLK-TEGPQLRKQLQENSRYFRAGMEKLGFQLV--PGNHPI---IPVMLGD-----AQLATNMADHLLQEGIYVVGFSY 359 (399)
T ss_dssp HHHH-HTHHHHHHHHHHHHHHHHHHHHHHTCCBC--CCSSSE---EEEEEEC-----HHHHHHHHHHHHHTTEECCEECT
T ss_pred HHHh-hccHHHHHHHHHHHHHHHHHHHHcCCCcC--CCCCCE---EEEEeCC-----HHHHHHHHHHHHHCCCEEeeeCC
Confidence 5443 45667777888999999999987 55553 222322 3344431 23567899999999998764333
Q ss_pred C----CCCEEEEeccCCCCHHHHHHHHccCChhHHHHhhc
Q 001989 940 P----VPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRLK 975 (985)
Q Consensus 940 p----~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~~ 975 (985)
+ ..+++|++++..+|++|+++ +++.|+++++++.
T Consensus 360 ~~~~~~~~~iRi~~~~~~~~~~i~~--~~~~l~~~~~~~~ 397 (399)
T 3tqx_A 360 PVVPMGKARIRVQMSAVHTQQQLDR--AIEAFGQVGKKLG 397 (399)
T ss_dssp TTSCTTCEEEEEECCTTCCHHHHHH--HHHHHHHHHHHTT
T ss_pred CCCCCCCceEEEEeecCCCHHHHHH--HHHHHHHHHHHhc
Confidence 2 13689999999999999999 8899999887653
|
| >3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha beta protein, alternative splicing, catecholamine biosynthesis, lyase; HET: LLP; 1.75A {Drosophila melanogaster} SCOP: c.67.1.6 | Back alignment and structure |
|---|
Probab=99.84 E-value=6.5e-19 Score=207.66 Aligned_cols=358 Identities=10% Similarity=0.011 Sum_probs=226.5
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhcCCCc---cceecCCCCCCCCCcHHHHHHHHhCCccccccCCChhhHhhhHHHHHHH
Q 001989 139 MKFSKFDEGLTESQMIEHMQKLASMNKV---YKSFIGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLN 215 (985)
Q Consensus 139 ~~lp~~~~~~se~e~~~~~~~l~~~n~~---~~~~lG~g~y~~~~p~~v~~~i~~~~~~~t~~~pyq~e~sqg~l~~i~e 215 (985)
..+| .++.+-.++++++.++...+.. ...|+|.-.-+...|+.+.+.+.+ .+-..-..| +.+.+..+...+
T Consensus 44 ~~~p--~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~--~~n~~~~~~--~~~p~~~~lE~~ 117 (475)
T 3k40_A 44 DAAP--EKPEKWQDVMQDIERVIMPGVTHWHSPKFHAYFPTANSYPAIVADMLSG--AIACIGFTW--IASPACTELEVV 117 (475)
T ss_dssp SSCC--SSCCCHHHHHHHHHHHTGGGCCCTTCTTBCCSSCCCCCHHHHHHHHHHH--HHCCCSSSC--CCCHHHHHHHHH
T ss_pred CCCC--CCCCCHHHHHHHHHHHHhccCCCCCCcCceeeCCCCCcHHHHHHHHHHH--HhCccccCc--cCCcHHHHHHHH
Confidence 4577 5788999999999987544321 234555443333455555433221 110111112 235566677777
Q ss_pred HHHHHHHhcCCCCc---------ceeeccchHHHHHHHHHHhhhhc-------C---------CCCEEEEcCCCChhHHH
Q 001989 216 FQTMIADLTGLPMS---------NASLLDEGTAAAEAMAMCNNIQK-------G---------KKKTFIIASNCHPQTID 270 (985)
Q Consensus 216 ~q~~ia~L~g~~~~---------~~sl~~~~ta~~ea~~~a~~~~~-------~---------~g~~Vlv~~~~H~s~~~ 270 (985)
...++++++|.+.. .+.+++|||.+...++++.+... + ++++|++++..|+++.+
T Consensus 118 v~~~l~~~~g~~~~~~~~~~~~~~gv~t~ggt~anl~al~~ar~~~~~~~~~~~~~~~~~~~~~~~~vi~s~~~H~s~~~ 197 (475)
T 3k40_A 118 MMDWLGKMLELPAEFLACSGGKGGGVIQGTASESTLVALLGAKAKKLKEVKELHPEWDEHTILGKLVGYCSDQAHSSVER 197 (475)
T ss_dssp HHHHHHHHTTCCGGGCGGGTSSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHEEEEEETTSCHHHHH
T ss_pred HHHHHHHHhCCCchhccccCCCCCeEEcCchHHHHHHHHHHHHHHHHHHhhccCcccccccccCCeEEEECCCchHHHHH
Confidence 88899999999864 47788898876554444332110 1 24689999999999999
Q ss_pred HHHHhhcCCCeEEEEeCc-------hhhhc-cCCC------EeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecC
Q 001989 271 ICITRADGFDIKVVVSDL-------KDIDY-KSGD------VCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDL 335 (985)
Q Consensus 271 ~~~~~a~~~gi~v~~v~~-------~~l~~-l~~~------t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~ 335 (985)
.++. .|++++.++. ++|++ +.++ +.+|+++.+ |.+|.++|+++|+++||++|++++||+ .
T Consensus 198 ~~~~----~g~~~~~v~~d~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~t~~G~~~~l~~I~~la~~~~~~lhvD~-A 272 (475)
T 3k40_A 198 AGLL----GGVKLRSVQSENHRMRGAALEKAIEQDVAEGLIPFYAVVTLGTTNSCAFDYLDECGPVGNKHNLWIHVDA-A 272 (475)
T ss_dssp HHHH----HTCEEEEECCBTTBCCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHTTCEEEEEC-T
T ss_pred HHHH----cCCceEEEECCCCCcCHHHHHHHHHHHHHCCCccEEEEEEecCCCCcCcCCHHHHHHHHHHhCCeEEEeH-H
Confidence 8763 4778887764 35655 5433 677888876 679999999999999999999999954 3
Q ss_pred ccccCCCCC-------CcccceEEEecC-ccccccCCCCCCcEEEEEEchh-hH-hcC---CCceeeeeecCCCCcceee
Q 001989 336 LALTILKPP-------GELGADIVVGSA-QRFGVPMGYGGPHAAFLATSQE-YK-RMM---PGRIVGVSIDSSGKPALRV 402 (985)
Q Consensus 336 ~~lg~l~~~-------~~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~-~~-~~l---p~~~vG~t~d~~g~~~~~l 402 (985)
++.+.+..+ +--++|.+++++ |+|+.|. ++|+++++++ .+ +.+ ++.+.+ +..+. ..
T Consensus 273 ~~~~~~~~~~~~~~~~gi~~~Ds~~~~~hK~l~~p~-----g~g~l~~~~~~~l~~~~~~~~~yl~~---~~~~~---~~ 341 (475)
T 3k40_A 273 YAGSAFICPEYRHLMKGIESADSFNFNPHKWMLVNF-----DCSAMWLKDPSWVVNAFNVDPLYLKH---DMQGS---AP 341 (475)
T ss_dssp TGGGGGGSGGGGGGGTTGGGCSEEEECHHHHSSCCS-----SCEEEEESSGGGC--------------------------
T ss_pred hHHHHHhCHhhHHHhcCcccCCEEEECchhccCCCC-----ceEEEEEeCHHHHHHHhcCCccccCC---CcCCC---CC
Confidence 343322111 112469999999 6677664 3567888764 32 222 111111 00000 00
Q ss_pred ecccccccccccccCCCccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCCCcceEEEec
Q 001989 403 AMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDTVKVKC 482 (985)
Q Consensus 403 ~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~~~~~~~~~~ 482 (985)
+. . +..-+.++. ....++.++ +..+|.+|++++.++..+++++++++|+++++++++.++..+.+.|+.
T Consensus 342 ~~--~--~~~~~~sr~-----~~~l~l~~a--l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~l~~~~~~~iv~f~~ 410 (475)
T 3k40_A 342 DY--R--HWQIPLGRR-----FRALKLWFV--LRLYGVENLQAHIRRHCNFAKQFGDLCVADSRFELAAEINMGLVCFRL 410 (475)
T ss_dssp -----------CCCGG-----GTHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTEEESSCCBTTEEEEEE
T ss_pred Cc--c--cccccCCCc-----ccHHHHHHH--HHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCCceEEEEEEe
Confidence 00 0 000011111 112223333 366788999999999999999999999998449998766667777776
Q ss_pred CC----HHHHHHHHHHcCce-eeee--c-CCeEEEEecc-CCCHHHHHHHHHHHhC
Q 001989 483 AD----AHAIASAAYKIEMN-LRVV--D-SNTVTASFDE-TTTLEDVDKLFIVFAG 529 (985)
Q Consensus 483 ~~----~~~v~~~L~~~GI~-~~~~--~-~~~lris~t~-~~t~edId~li~aL~~ 529 (985)
++ ..++.++|.++|+. +... . ...+|++++. .+|++|||+++++|.+
T Consensus 411 ~~~~~~~~~l~~~L~~~g~~~~~~~~~~g~~~lR~~~~~~~tt~~di~~~~~~i~~ 466 (475)
T 3k40_A 411 KGSNERNEALLKRINGRGHIHLVPAKIKDVYFLRMAICSRFTQSEDMEYSWKEVSA 466 (475)
T ss_dssp SSCHHHHHHHHHHHHHHTSCBCEEEEETTEEEEEEECCCTTCCHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHhCCcEEEEeeEECCEEEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 43 67899999988764 3322 1 3579999875 5689999999999974
|
| >3vax_A Putative uncharacterized protein DNDA; desulfurase, transferase; HET: PLP; 2.40A {Streptomyces lividans} | Back alignment and structure |
|---|
Probab=99.84 E-value=2.9e-19 Score=205.09 Aligned_cols=292 Identities=12% Similarity=0.040 Sum_probs=194.6
Q ss_pred HhhhHHHHHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhh-hhcCCCC-EEEEcCCCChhHHHHHHHhhcCCCeE
Q 001989 205 IAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNN-IQKGKKK-TFIIASNCHPQTIDICITRADGFDIK 282 (985)
Q Consensus 205 ~sqg~l~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~-~~~~~g~-~Vlv~~~~H~s~~~~~~~~a~~~gi~ 282 (985)
...+..+...++++.+++++|.++.++.+++|+|.+++.++.++. +..++|| +|+++...||++...+..+ +..|++
T Consensus 57 ~~~~~~~~~~~l~~~la~~~~~~~~~v~~~~g~t~al~~~~~~l~~~~~~~gd~~Vl~~~~~~~~~~~~~~~~-~~~g~~ 135 (400)
T 3vax_A 57 YGIRAKRGVERAREYLASTVSAEPDELIFTSGATESNNIALLGLAPYGERTGRRHIITSAIEHKAVLEPLEHL-AGRGFE 135 (400)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCGGGEEEESCHHHHHHHHHHTTHHHHHHHTCCEEEEETTSCHHHHHHHHHH-HTTTCE
T ss_pred hHHHHHHHHHHHHHHHHHHcCCCCCcEEEeCCHHHHHHHHHHHHHHhhccCCCCEEEECccccHhHHHHHHHH-HhcCCe
Confidence 344556778899999999999998889999999988887776542 1112789 9999999999999888765 457999
Q ss_pred EEEeCc--------hhhhc-cCCCEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCC-CCCcccceE
Q 001989 283 VVVSDL--------KDIDY-KSGDVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILK-PPGELGADI 351 (985)
Q Consensus 283 v~~v~~--------~~l~~-l~~~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~-~~~~~GaDi 351 (985)
++.++. ++|++ +++++++|++.+| |++|.+.|+++|.++|+++|+++++| +..+.+... ....+ +|+
T Consensus 136 ~~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~l~~i~~la~~~~~~li~D-~a~~~~~~~~~~~~~-~d~ 213 (400)
T 3vax_A 136 VDFLTPGPSGRISVEGVMERLRPDTLLVSLMHVNNETGVIQPVAELAQQLRATPTYLHVD-AAQGYGKVPGDLTTP-IDM 213 (400)
T ss_dssp EEEECCCTTCCCCHHHHHTTCCTTEEEEECCSBCTTTCBBCCHHHHHHHHTTSSCEEEEE-CTTTTTTSGGGGGSC-CSE
T ss_pred EEEEccCCCCCcCHHHHHHhcCCCceEEEEECCCCCceeeCcHHHHHHHHHhcCCEEEEE-hhhhcCCCCcChhhc-CcE
Confidence 988864 45666 7889999999887 78999999999999999999999995 344554332 12345 999
Q ss_pred EEecCccccccCCCCCCcEEEEE-Echh-hH---hcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHH
Q 001989 352 VVGSAQRFGVPMGYGGPHAAFLA-TSQE-YK---RMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQAL 426 (985)
Q Consensus 352 ~v~s~k~lg~P~~~GGP~~G~l~-~~~~-~~---~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l 426 (985)
+++|.+|+. |++|+|+++ ++++ +. ..+.+.+.|+ .+..+...+|.|+ ...
T Consensus 214 ~~~s~~K~~-----g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~---~~~ 268 (400)
T 3vax_A 214 ISISGHKIG-----APKGVGALVTRRREEMDDERVPLEPIMFGG-----------------GQERKLRPGTLPV---PLI 268 (400)
T ss_dssp EEEETGGGT-----SCSSCEEEEECBCSSSTTCBCCCCCSSCSS-----------------CTGGGTSCSCCCH---HHH
T ss_pred EEEeHHHhC-----CCCceEEEEEecchhccccccccCceecCC-----------------CceeeeecCCCCH---HHH
Confidence 999984453 334578888 8763 21 1222211110 0111223344444 344
Q ss_pred HHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCCC---cceEEEecCC--HHHHHHHHHHcCceeee
Q 001989 427 LANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPF---FDTVKVKCAD--AHAIASAAYKIEMNLRV 501 (985)
Q Consensus 427 ~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~~---~~~~~~~~~~--~~~v~~~L~~~GI~~~~ 501 (985)
.++.+++ .++ .++++++.++..++++++.+.|+ ..++++..+.. .+.+.+..++ ..++.+.|. +||.++.
T Consensus 269 ~a~~~al--~~~-~~~~~~~~~~~~~~~~~l~~~L~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~-~gi~v~~ 343 (400)
T 3vax_A 269 MGLAEAA--KIF-EAEHAQWQVAAQDLRSRLLAGLA-STSFQVNGDQDHVVPHILNLSFEDVDAEAFLVTLK-DLVAVAT 343 (400)
T ss_dssp HHHHHHH--HHH-HHSHHHHHHHHHHHHHHHHHHHT-TTTCEECSCTTSBCTTEEEEECTTCCHHHHHHHHH-HHHHHTT
T ss_pred HHHHHHH--HHH-HhhHHHHHHHHHHHHHHHHHhhC-CCCEEEeCCcccCCCCEEEEEeCCCCHHHHHHHHh-cCcEEEe
Confidence 4444444 222 34789999999999999999999 63488874321 2356666665 889999999 9996532
Q ss_pred e-------------------c----CCeEEEEe-ccCCCHHHHHHHHHHHhC
Q 001989 502 V-------------------D----SNTVTASF-DETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 502 ~-------------------~----~~~lris~-t~~~t~edId~li~aL~~ 529 (985)
- . .+.+|+++ +..+|++|+++++++|++
T Consensus 344 g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRls~~~~~~t~e~i~~~~~~l~~ 395 (400)
T 3vax_A 344 GSASTSASFTPSHVLRAMGLPEEAASKSLRFSWTPGQATDLDVEELARGVAK 395 (400)
T ss_dssp TTEEEEEEECCHHHHHTTTCCHHHHTSEEEEEEEEC----------------
T ss_pred cccccCCCCCccHHHHHcCCCccccCceEEEEccCCCCCHHHHHHHHHHHHH
Confidence 0 0 38899999 999999999999999875
|
| >3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural genomics, joint center for structural genomics; HET: LLP MSE; 2.01A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=99.84 E-value=4.3e-20 Score=209.50 Aligned_cols=280 Identities=11% Similarity=0.072 Sum_probs=196.0
Q ss_pred HHHHHHHHHhCCCccc-eecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcC-CCCC
Q 001989 636 NLGEWLCTITGFDSFS-LQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGT-DAKG 713 (985)
Q Consensus 636 e~~~~la~l~G~~~~~-~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~-d~~g 713 (985)
++++.+++++|.+... ++.++|++++..++.++. .++++|+++.+.|..+...++..|++++.+|+ ++++
T Consensus 69 ~lr~~la~~~~~~~~~v~~~~g~~~a~~~~~~~l~--------~~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~ 140 (365)
T 3get_A 69 ELKSTLAQKYKVQNENIIIGAGSDQVIEFAIHSKL--------NSKNAFLQAGVTFAMYEIYAKQCGAKCYKTQSITHNL 140 (365)
T ss_dssp HHHHHHHHHHTCCGGGEEEESSHHHHHHHHHHHHC--------CTTCEEEECSSCCTHHHHHHHHHTCEEEECSSSSCCH
T ss_pred HHHHHHHHHhCCCcceEEECCCHHHHHHHHHHHHh--------CCCCEEEEeCCChHHHHHHHHHcCCEEEEEecCCCCC
Confidence 7888999999987654 445666666654443321 46789999988887777778889999999998 6678
Q ss_pred CCCHHHHHHHHHhcCCCEEEEEEEcCC-CccccccCHHHHHHHHH--HcCCEEEEEccccccc---cCC--CCC----Cc
Q 001989 714 NINIEELRKAAEANRDNLSTLMVTYPS-THGVYEEGIDEICKIIH--DNGGQVYMDGANMNAQ---VGL--TSP----GY 781 (985)
Q Consensus 714 ~iD~e~L~~~i~~~~~~t~~Vvv~~pn-~~G~i~~di~eI~~la~--~~galliVD~a~~~~~---~~l--~~p----g~ 781 (985)
+|+++|+++++ +++++|++++|+ ++|.+. |++++.++++ ++|+++++|++|.... .+- ..+ ..
T Consensus 141 -~d~~~l~~~l~---~~~~~v~~~~p~nptG~~~-~~~~l~~l~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~ 215 (365)
T 3get_A 141 -DEFKKLYETHK---DEIKLIFLCLPNNPLGECL-DASEATEFIKGVNEDCLVVIDAAYNEFASFKDSKKHLEPCELIKE 215 (365)
T ss_dssp -HHHHHHHHHTT---TTEEEEEEESSCTTTCCCC-CHHHHHHHHHTSCTTSEEEEECTTHHHHHHHCGGGCCCHHHHHHH
T ss_pred -CCHHHHHHHhC---CCCCEEEEcCCCCCCCCCc-CHHHHHHHHHhCCCCcEEEEeCccHHHhcccCCcccccHhHHhcc
Confidence 99999999997 899999999995 699998 7888888888 6799999999985221 110 111 12
Q ss_pred cCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHH
Q 001989 782 IGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIA 861 (985)
Q Consensus 782 ~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~ 861 (985)
.+.++++.|+||+|+. .|.++|++++++++.+.+.... . ..+. +.....++.+++.
T Consensus 216 ~~~~i~~~s~sK~~~~----~G~r~G~~~~~~~~~~~~~~~~------------~--~~~~------~~~~~~~~~~~l~ 271 (365)
T 3get_A 216 FDNVLYLGTFSKLYGL----GGLRIGYGIANANIISAFYKLR------------A--PFNV------SNLALKAAVAAMD 271 (365)
T ss_dssp CTTEEEEEESSSTTSC----TTTCCEEEEECHHHHHHHHHHS------------C--TTCS------CHHHHHHHHHHHT
T ss_pred CCCEEEEeecchHhcC----cchheEEEEcCHHHHHHHHHhc------------C--CCCc------CHHHHHHHHHHhC
Confidence 3567889999999854 3678999999877665442110 0 0011 1122222233333
Q ss_pred HhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCC-C
Q 001989 862 MMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMS-W 939 (985)
Q Consensus 862 ~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~-~ 939 (985)
..+.+.+..++..++++++.+.|++ ++.+ .++.+. + +.+.++. . +..++.+.|.++||.+.... +
T Consensus 272 --~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~--~~~~~~-~--~~~~~~~-----~-~~~~~~~~l~~~gi~v~~g~~~ 338 (365)
T 3get_A 272 --DDEFTEKTLENNFSQMELYKEFAKKHNIKI--IDSYTN-F--ITYFFDE-----K-NSTDLSEKLLKKGIIIRNLKSY 338 (365)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHTTCEE--CCCSSS-E--EEEECSS-----S-CHHHHHHHHHTTTEECEECGGG
T ss_pred --CHHHHHHHHHHHHHHHHHHHHHHHhCCCEE--CCCCCe-E--EEEECCC-----C-CHHHHHHHHHHCCEEEEECccC
Confidence 2356777777888899999999987 4433 222222 2 4566541 2 78899999999999875432 2
Q ss_pred CCCCEEEEeccCCCCHHHHHHHHccCChhHHH
Q 001989 940 PVPGTLMIEPTESESKSWTGIVMLSSPSEKKL 971 (985)
Q Consensus 940 p~~~~lris~t~~~t~eeId~~~~~~~l~~~~ 971 (985)
. .+.+||+++ +++|+++ +++.|++++
T Consensus 339 ~-~~~iRis~~---~~~~i~~--l~~~l~~~l 364 (365)
T 3get_A 339 G-LNAIRITIG---TSYENEK--FFTEFDKIL 364 (365)
T ss_dssp T-CSEEEEECC---CHHHHHH--HHHHHHHHH
T ss_pred C-CCEEEEEcC---CHHHHHH--HHHHHHHHh
Confidence 2 589999985 8999999 777777764
|
| >3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.84 E-value=6.8e-20 Score=209.48 Aligned_cols=302 Identities=13% Similarity=0.090 Sum_probs=203.3
Q ss_pred HHHHHHHHHHHHHHhC--CCccc-eecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEE
Q 001989 631 QEMFNNLGEWLCTITG--FDSFS-LQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSV 707 (985)
Q Consensus 631 ~~~~~e~~~~la~l~G--~~~~~-~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v 707 (985)
.++.+++++++++.+| .+... ++.++|++++..++.++. .++++|+++...|..+...++..|++++.+
T Consensus 65 ~~l~~~la~~l~~~~g~~~~~~~i~~~~g~~~a~~~~~~~l~--------~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~ 136 (391)
T 3dzz_A 65 AEYYKAVADWEEIEHRARPKEDWCVFASGVVPAISAMVRQFT--------SPGDQILVQEPVYNMFYSVIEGNGRRVISS 136 (391)
T ss_dssp HHHHHHHHHHHHHHHSCCCCGGGEEEESCHHHHHHHHHHHHS--------CTTCEEEECSSCCHHHHHHHHHTTCEEEEC
T ss_pred HHHHHHHHHHHHHHhCCCCCHHHEEECCCHHHHHHHHHHHhC--------CCCCeEEECCCCcHHHHHHHHHcCCEEEEe
Confidence 3566788889999888 44444 445666766654444331 467899999988877777788899999999
Q ss_pred cCCC-C--CCCCHHHHHHHHHhcCCCEEEEEEEcC-CCcccc---ccCHHHHHHHHHHcCCEEEEEccccccc-cC--CC
Q 001989 708 GTDA-K--GNINIEELRKAAEANRDNLSTLMVTYP-STHGVY---EEGIDEICKIIHDNGGQVYMDGANMNAQ-VG--LT 777 (985)
Q Consensus 708 ~~d~-~--g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i---~~di~eI~~la~~~galliVD~a~~~~~-~~--l~ 777 (985)
|+++ + +.+|+++|++++++ +++++|++++| |++|.+ + ++++|+++|+++|+++|+|++|.... .+ ..
T Consensus 137 ~~~~~~~~~~~d~~~l~~~l~~--~~~~~v~i~~p~nptG~~~~~~-~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~ 213 (391)
T 3dzz_A 137 DLIYENSKYSVNWADLEEKLAT--PSVRMMVFCNPHNPIGYAWSEE-EVKRIAELCAKHQVLLISDEIHGDLVLTDEDIT 213 (391)
T ss_dssp CCEEETTEEECCHHHHHHHHTS--TTEEEEEEESSBTTTTBCCCHH-HHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCC
T ss_pred eeeecCCceeecHHHHHHHHhc--cCceEEEEECCCCCCCcccCHH-HHHHHHHHHHHCCCEEEEecccccccCCCCCce
Confidence 9852 2 34999999999963 58999999999 579998 6 79999999999999999999984211 11 11
Q ss_pred CCCccC---Cc--EEEeCCcccccccCCCCCCceEEEEEc-ccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhH
Q 001989 778 SPGYIG---AD--VCHLNLHKTFCIPHGGGGPGMGPIGVK-KHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSAL 851 (985)
Q Consensus 778 ~pg~~g---~D--i~~~s~hK~l~~p~g~GGPg~G~i~~~-~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~ 851 (985)
....++ .| +++.|+||+|+. +|.++|+++++ +++.+.+...... ..+.+.+ ..
T Consensus 214 ~~~~~~~~~~d~~i~~~s~sK~~g~----~G~r~G~~~~~~~~~~~~~~~~~~~-----------~~~~~~~------~~ 272 (391)
T 3dzz_A 214 PAFTVDWDAKNWVVSLISPSKTFNL----AALHAACAIIPNPDLRARAEESFFL-----------AGIGEPN------LL 272 (391)
T ss_dssp CGGGSCTTTGGGEEEEECSHHHHTC----TTTCCEEEECCSHHHHHHHHHHHHH-----------HTCSSCC------TT
T ss_pred ehhhcCccccCcEEEEEeChhhccc----cchhheEEEECCHHHHHHHHHHHHh-----------hccCCCC------HH
Confidence 112222 56 889999999954 36789999987 6665443211000 0011111 11
Q ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHH-H
Q 001989 852 ILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLM-D 929 (985)
Q Consensus 852 ~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~-~ 929 (985)
...++.+.+.. +.+.+.+..++..++++++.+.|++ ..++.+..+.+..+ +.++++. .+.+..++.++|. +
T Consensus 273 ~~~a~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~--~~~~~~~----~~~~~~~~~~~l~~~ 345 (391)
T 3dzz_A 273 AIPAAIAAYEE-GHDWLRELKQVLRDNFAYAREFLAKEVPEVKVLDSNASYL--AWVDISA----LGMNAEDFCKYLREK 345 (391)
T ss_dssp HHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHHHHHHCTTSEECCCCBSSE--EEEECGG----GCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhc-cHHHHHHHHHHHHHHHHHHHHHHHhhCCCcEEeccCceEE--EEEehhh----cCCCHHHHHHHHHHh
Confidence 22223344443 4555677777888889999999986 22332222222222 3355541 2467889999995 8
Q ss_pred CCCccCCCC-CC--CCCEEEEeccCCCCHHHHHHHHccCChhHHHHhhc
Q 001989 930 YGFHGPTMS-WP--VPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRLK 975 (985)
Q Consensus 930 ~Gi~~~~~~-~p--~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~~ 975 (985)
+||.+.... +. ..+.+||+++ ++++||++ +++.|++++++++
T Consensus 346 ~gi~v~~g~~~~~~~~~~iRis~~--~~~~~i~~--~l~~l~~~l~~~~ 390 (391)
T 3dzz_A 346 TGLIISAGNGYRGNGHEFVRINLA--CPKELVID--GMQRLKQGVLNLN 390 (391)
T ss_dssp HCEECEESGGGCTTGGGEEEEECC--SCHHHHHH--HHHHHHHHHHTCC
T ss_pred CCEEEeCchhhCCCCCCEEEEEec--CCHHHHHH--HHHHHHHHHHHhh
Confidence 899875321 22 2488999998 68999999 8888998887664
|
| >3ffr_A Phosphoserine aminotransferase SERC; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP MSE P33; 1.75A {Cytophaga hutchinsonii atcc 33406} | Back alignment and structure |
|---|
Probab=99.83 E-value=1.7e-19 Score=203.62 Aligned_cols=297 Identities=12% Similarity=0.010 Sum_probs=204.2
Q ss_pred hHHHHHHHHHHHHHHhcCCC-CcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEe
Q 001989 208 GRLESLLNFQTMIADLTGLP-MSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVS 286 (985)
Q Consensus 208 g~l~~i~e~q~~ia~L~g~~-~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v 286 (985)
+..+.+.++++.+++++|.+ ..++.+++|+|.++++++.++. ++ ++++....|.+. .+...++..|++++.+
T Consensus 40 ~~~~~~~~~~~~la~~~g~~~~~~v~~~~g~t~al~~~~~~l~---~~--~~i~~~~~~~~~--~~~~~~~~~g~~~~~v 112 (362)
T 3ffr_A 40 KFEEVYKTASDNLKTLLELPSNYEVLFLASATEIWERIIQNCV---EK--KSFHCVNGSFSK--RFYEFAGELGREAYKE 112 (362)
T ss_dssp HHHHHHHHHHHHHHHHTTCCTTEEEEEESCHHHHHHHHHHHHC---SS--EEEEEECSHHHH--HHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcEEEEeCCchHHHHHHHHhcc---CC--cEEEEcCcHHHH--HHHHHHHHhCCCeEEE
Confidence 34577888999999999985 4678888999988887777653 14 666555555442 2222244568888887
Q ss_pred Cch--------hhhccCCCEeEEEEEcC-CCCeeeccHHHHHHHHHhC-CcEEEEEecCccccCCCCCCcccceEEEecC
Q 001989 287 DLK--------DIDYKSGDVCGVLVQYP-GTEGEVLDYGDFIKNAHAN-GVKVVMATDLLALTILKPPGELGADIVVGSA 356 (985)
Q Consensus 287 ~~~--------~l~~l~~~t~~V~v~~p-n~~G~v~di~~I~~~a~~~-galliV~a~~~~lg~l~~~~~~GaDi~v~s~ 356 (985)
+.+ +++ ++++|++|++.+| |++|.+.|+++|+++||++ |+++++|+ ..+.+....+.. .+|++++++
T Consensus 113 ~~~~~~~~d~~~l~-~~~~~~~v~~~~~~nptG~~~~l~~i~~la~~~p~~~li~D~-a~~~~~~~~~~~-~~d~~~~s~ 189 (362)
T 3ffr_A 113 EAAFGKGFYPADIT-VPADAEIICLTHNETSSGVSMPVEDINTFRDKNKDALIFVDA-VSSLPYPKFDWT-KIDSVFFSV 189 (362)
T ss_dssp ECCTTCCCCGGGCC-CCTTCCEEEEESEETTTTEECCHHHHTTSGGGSTTSEEEEEC-TTTTTSSCCCTT-SCSEEEEET
T ss_pred ecCCCCCCCHHHHh-ccCCccEEEEEcCCCCcceeCCHHHHHHHHHhCCCCEEEEec-ccccCCcccChh-HCcEEEEec
Confidence 642 333 5778999999987 7899999999999999999 99999953 445554322211 189999998
Q ss_pred -ccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccc-c-ccCCCccchhHHHHHHHHH
Q 001989 357 -QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRR-D-KATSNICTAQALLANMAAM 433 (985)
Q Consensus 357 -k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irr-e-~atsni~t~~~l~a~~aa~ 433 (985)
|+|++ +||+|++++++++++++.....|. +...+.+++....+..++ . .+|.|. ....++.+++
T Consensus 190 ~K~~~~-----~~G~g~~~~~~~~~~~~~~~~~gg-----~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~al 256 (362)
T 3ffr_A 190 QKCFGL-----PAGLGVWILNDRVIEKSKALLAKR-----KSIGTYHTIPSMLEKARVNQTPETPNA---MNIFLLGKVT 256 (362)
T ss_dssp TSTTCC-----CSCCEEEEEEHHHHHHHHHHHHTT-----CCCCSTTSHHHHHHHHTTTCCSSCCCH---HHHHHHHHHH
T ss_pred ccccCC-----CCceEEEEECHHHHHHhhhccccC-----CCCcccccHHHHHHHhhcCCCCCCchH---HHHHHHHHHH
Confidence 77753 356799999998877664332221 112233332111111111 1 233332 3444444443
Q ss_pred HHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcC-CC---CcceEEEecCC-HHHHHHHHHHcCceeee----ecC
Q 001989 434 YAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQG-LP---FFDTVKVKCAD-AHAIASAAYKIEMNLRV----VDS 504 (985)
Q Consensus 434 ~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~-~~---~~~~~~~~~~~-~~~v~~~L~~~GI~~~~----~~~ 504 (985)
.++..+|++++.++..++++++++.|+++.|++++. .+ ....+.+..++ +.++.+.|.++||.+.. ..+
T Consensus 257 --~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~g~~~~~~ 334 (362)
T 3ffr_A 257 --GDMLQISADGIRKQTEEKAALINTYIESSKVFSFGVEDAKLRSMTTIVANTTMLPGEINKILEPFDMAVGAGYGSKKE 334 (362)
T ss_dssp --HHHHHHCHHHHHHHHHHHHHHHHHHHHHCSSEEESSSCGGGBCSSEEEEEESSCHHHHHHHHGGGTEEEEECSGGGTT
T ss_pred --HHHHHccHHHHHHHHHHHHHHHHHHHHHccCceeccCChhhcCCceEEEecCCCHHHHHHHHHHCCeEEecCccccCC
Confidence 455566799999999999999999999993399875 21 12345566664 88999999999998764 235
Q ss_pred CeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 505 NTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 505 ~~lris~t~~~t~edId~li~aL~~ 529 (985)
+.+|++++..+|+||+++++++|++
T Consensus 335 ~~iRis~~~~~~~e~i~~l~~~l~~ 359 (362)
T 3ffr_A 335 TQIRIANFPAHSLEQVHKLVQTLKE 359 (362)
T ss_dssp TEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHH
Confidence 7899999999999999999999873
|
| >3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.83 E-value=8.1e-20 Score=207.41 Aligned_cols=284 Identities=13% Similarity=0.101 Sum_probs=194.5
Q ss_pred HHHHHHHHHHHhCC-Cccc-eecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcCCC
Q 001989 634 FNNLGEWLCTITGF-DSFS-LQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDA 711 (985)
Q Consensus 634 ~~e~~~~la~l~G~-~~~~-~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~d~ 711 (985)
..++++++++++|. +... ++.++|++++..++. .+ ..++++|+++...|..+...++..|++++.+|+++
T Consensus 69 ~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~---~~-----~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~ 140 (367)
T 3euc_A 69 SEALRAKLKEVMQVPAGMEVLLGNGSDEIISMLAL---AA-----ARPGAKVMAPVPGFVMYAMSAQFAGLEFVGVPLRA 140 (367)
T ss_dssp HHHHHHHHHHHHTCCTTCEEEEEEHHHHHHHHHHH---HT-----CCTTCEEEEEESCSCCSCHHHHTTTCEEEEEECCT
T ss_pred HHHHHHHHHHHhCCCCcceEEEcCCHHHHHHHHHH---HH-----cCCCCEEEEcCCCHHHHHHHHHHcCCeEEEecCCC
Confidence 34788999999998 4434 444555555543333 32 14678999988888777777888999999999988
Q ss_pred CCCCCHHHHHHHHHhcCC-CEEEEEEEcCC-Cccccc--cCHHHHHHHHHHc--CCEEEEEccccccccC---CCCCCcc
Q 001989 712 KGNINIEELRKAAEANRD-NLSTLMVTYPS-THGVYE--EGIDEICKIIHDN--GGQVYMDGANMNAQVG---LTSPGYI 782 (985)
Q Consensus 712 ~g~iD~e~L~~~i~~~~~-~t~~Vvv~~pn-~~G~i~--~di~eI~~la~~~--galliVD~a~~~~~~~---l~~pg~~ 782 (985)
++.+|+++|+++++ + ++++|++++|+ ++|.+. .++++|+++|+++ |+++++|+++.. +.. ....+..
T Consensus 141 ~~~~d~~~l~~~l~---~~~~~~v~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~~~li~De~~~~-~~~~~~~~~~~~~ 216 (367)
T 3euc_A 141 DFTLDRGAMLAAMA---EHQPAIVYLAYPNNPTGNLFDAADMEAIVRAAQGSVCRSLVVVDEAYQP-FAQESWMSRLTDF 216 (367)
T ss_dssp TSCCCHHHHHHHHH---HHCCSEEEEESSCTTTCCCCCHHHHHHHHHHTBTTSCBCEEEEECTTCC-SSSCCSGGGGGTC
T ss_pred CCCCCHHHHHHHhh---ccCCCEEEEcCCCCCCCCCCCHHHHHHHHHhhhhcCCCcEEEEeCcchh-hcccchHHHHhhC
Confidence 88999999999998 5 78899999985 699884 2588889999999 999999999742 111 1111234
Q ss_pred CCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHH
Q 001989 783 GADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAM 862 (985)
Q Consensus 783 g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~ 862 (985)
+.++++.|+||+ +. +|.++|++++++++.+.+.... .+.+. +.....++.+++..
T Consensus 217 ~~~i~~~s~sK~-~~----~G~r~G~~~~~~~~~~~~~~~~--------------~~~~~------~~~~~~a~~~~l~~ 271 (367)
T 3euc_A 217 GNLLVMRTVSKL-GL----AGIRLGYVAGDPQWLEQLDKVR--------------PPYNV------NVLTEATALFALEH 271 (367)
T ss_dssp TTEEEEEECCCT-TS----CSCCEEEEEECHHHHHHHGGGC--------------CSSCC------CHHHHHHHHHHHTT
T ss_pred CCEEEEecchhh-cc----cccCceeeeeCHHHHHHHHHhC--------------CCCCC------CHHHHHHHHHHhcC
Confidence 556888899998 43 4678999999877655442110 01111 12222333344443
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHHhhccCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCCC---
Q 001989 863 MGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSW--- 939 (985)
Q Consensus 863 lg~eGl~~~~~~~~~~a~~l~~~L~~g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~~--- 939 (985)
.+.+.+..++..++++++.+.|++..++...++.+. + +.+.++ +..++.+.|.++||.+.....
T Consensus 272 --~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~-~--~~~~~~--------~~~~l~~~l~~~gi~v~~~~~~~~ 338 (367)
T 3euc_A 272 --VAVLDEQAAQLRAERSRVAEGMAAHGGVTVFPSAAN-F--LLARVP--------DAAQTFDRLLARKVLIKNVSKMHP 338 (367)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHTSTTCEECCCSSS-E--EEEECS--------CHHHHHHHHHTTTEECEECGGGCG
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHhCCCcEECCCCCe-E--EEEECC--------CHHHHHHHHHHCCeEEEECCccCC
Confidence 455677777888899999999986323322222222 2 234442 578899999999998754221
Q ss_pred CCCCEEEEeccCCCCHHHHHHHHccCChhHHHH
Q 001989 940 PVPGTLMIEPTESESKSWTGIVMLSSPSEKKLH 972 (985)
Q Consensus 940 p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~ 972 (985)
...+++||+++ |++|+|+ ++++|+++++
T Consensus 339 ~~~~~iRis~~---~~~~i~~--~~~~l~~~l~ 366 (367)
T 3euc_A 339 LLANCLRVTVS---TPEENAQ--FLEAFAASLQ 366 (367)
T ss_dssp GGTTEEEEECC---CHHHHHH--HHHHHHHHTC
T ss_pred CCCCEEEEecC---CHHHHHH--HHHHHHHHhc
Confidence 13589999985 9999999 7777777653
|
| >2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=6e-19 Score=201.93 Aligned_cols=319 Identities=15% Similarity=0.091 Sum_probs=215.2
Q ss_pred CCCcHHHHHHHHhCCccccccCCChhhHhhhHHHHHHHHHHHHHHhcCCCCc-ceeeccchHHHHHHHHHHhhhhcCCCC
Q 001989 178 THVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMS-NASLLDEGTAAAEAMAMCNNIQKGKKK 256 (985)
Q Consensus 178 ~~~p~~v~~~i~~~~~~~t~~~pyq~e~sqg~l~~i~e~q~~ia~L~g~~~~-~~sl~~~~ta~~ea~~~a~~~~~~~g~ 256 (985)
...|+.+.+++.+.- .. .|.+ ...+.+.++++.+++++|.+.. ++.+++|+|.+++.++.++ . ++||
T Consensus 28 ~~~~~~v~~a~~~~~---~~--~~~~----~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~-~--~~gd 95 (393)
T 2huf_A 28 SNAPQRVLDAMSRPI---LG--HLHP----ETLKIMDDIKEGVRYLFQTNNIATFCLSASGHGGMEATLCNL-L--EDGD 95 (393)
T ss_dssp CCCCHHHHHHTTSCC---CC--TTSH----HHHHHHHHHHHHHHHHHTCCCSEEEEESSCHHHHHHHHHHHH-C--CTTC
T ss_pred CCCCHHHHHHHHhhh---cc--CCCH----HHHHHHHHHHHHHHHHhCCCCCcEEEEcCcHHHHHHHHHHHH-h--CCCC
Confidence 347777765544321 11 1222 2346677899999999999875 7888899998888777665 2 3889
Q ss_pred EEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc--------hhhhc-cCC-CEeEEEEEcC-CCCeeeccHHHHHHHHHhC
Q 001989 257 TFIIASNCHPQTIDICITRADGFDIKVVVSDL--------KDIDY-KSG-DVCGVLVQYP-GTEGEVLDYGDFIKNAHAN 325 (985)
Q Consensus 257 ~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~--------~~l~~-l~~-~t~~V~v~~p-n~~G~v~di~~I~~~a~~~ 325 (985)
+|+++...|+++. +...++..|++++.++. +++++ +++ ++++|++++| |.+|.+.|+++|.++|+++
T Consensus 96 ~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l~~i~~~~~~~ 173 (393)
T 2huf_A 96 VILIGHTGHWGDR--SADMATRYGADVRVVKSKVGQSLSLDEIRDALLIHKPSVLFLTQGDSSTGVLQGLEGVGALCHQH 173 (393)
T ss_dssp EEEEEESSHHHHH--HHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCTTHHHHHHHT
T ss_pred EEEEECCCcchHH--HHHHHHHcCCeeEEEeCCCCCCCCHHHHHHHHhccCCcEEEEEccCCCccccCCHHHHHHHHHHc
Confidence 9999999998853 22223446888877753 45555 666 7899999987 7899999999999999999
Q ss_pred CcEEEEEecCccccCCC-CCCcccceEEEecC-ccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeee
Q 001989 326 GVKVVMATDLLALTILK-PPGELGADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVA 403 (985)
Q Consensus 326 galliV~a~~~~lg~l~-~~~~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~ 403 (985)
|+++++|. .++++... ...++|+|+++++. |+|++ +||.|++++++++.+.+.....+ ...|.+.
T Consensus 174 ~~~li~D~-a~~~~~~~~~~~~~~~d~~~~s~sK~l~g-----~~G~G~~~~~~~~~~~~~~~~~~-------~~~~~~~ 240 (393)
T 2huf_A 174 NCLLIVDT-VASLGGAPMFMDRWEIDAMYTGSQKVLGA-----PPGITPVSFSHRAVERYKRRNTK-------VKVYYWD 240 (393)
T ss_dssp TCEEEEEC-TTTBTTBCCCTTTTTCSEEECCSSSTTCC-----CSSCEEEEECHHHHHHHHTCSSC-------CSCGGGC
T ss_pred CCEEEEEc-ccccCCCCcchhhcCccEEEECCCccccc-----CCCeEEEEECHHHHHHHhhcCCC-------CceEEEc
Confidence 99999953 44555332 23567899999998 76753 35678999998887665211000 0001111
Q ss_pred c------ccccccccccccCCCccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCC--Cc
Q 001989 404 M------QTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLP--FF 475 (985)
Q Consensus 404 l------~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~--~~ 475 (985)
. ....+..+...+|+|+ ....++.+++ .++..+|++++.++..++++++.+.|+++| +++..+. ..
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~a~~~al--~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~~~~ 314 (393)
T 2huf_A 241 MSLVGDYWGCFGRPRIYHHTISS---TLLYGLREAI--AMACEEGLPALIARHEDCAKRLYRGLQDAG-FELYADPKDRL 314 (393)
T ss_dssp HHHHHHHTTCSSSCCCCSCCCCH---HHHHHHHHHH--HHHHHHCHHHHHHHHHHHHHHHHHHHHHTT-CCBSSCGGGBC
T ss_pred hHHHHhhhccccccCCCCCCCCH---HHHHHHHHHH--HHHHHhCHHHHHHHHHHHHHHHHHHHHHcC-CeeccCccccC
Confidence 0 0001112223345554 3333444443 444445789999999999999999999986 8776432 12
Q ss_pred c-eEEEecC-C--HHHHHHHHHHc-Cceeeee----cCCeEEEEeccC-CCHHHHHHHHHHHhC
Q 001989 476 D-TVKVKCA-D--AHAIASAAYKI-EMNLRVV----DSNTVTASFDET-TTLEDVDKLFIVFAG 529 (985)
Q Consensus 476 ~-~~~~~~~-~--~~~v~~~L~~~-GI~~~~~----~~~~lris~t~~-~t~edId~li~aL~~ 529 (985)
. .+.+..+ + ..++.++|.++ ||.+... ..+.+|++++.+ ++++|+++++++|..
T Consensus 315 ~~~~~~~~~~~~~~~~~~~~L~~~~gi~v~~g~~~~~~~~~Ri~~~~~~~~~e~i~~~~~~l~~ 378 (393)
T 2huf_A 315 STVTTIKVPQGVDWLKAAQYAMKTYLVEISGGLGPTAGQVFRIGLMGQNATTERVDRVLQVFQE 378 (393)
T ss_dssp TTEEEEECCTTCCHHHHHHHHHHHHCEECBCCCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhCCEEEecCcccccCCEEEEEcccCcCCHHHHHHHHHHHHH
Confidence 2 4556664 3 78899999865 9988642 357899999554 579999999999974
|
| >3e77_A Phosphoserine aminotransferase; SERC, PLP, structural genomi structural genomics consortium, SGC, amino-acid biosynthesi aminotransferase; HET: PLP; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.83 E-value=4.1e-20 Score=210.06 Aligned_cols=304 Identities=10% Similarity=0.023 Sum_probs=197.2
Q ss_pred hhHHHHHHHHHHHHHHHhCCCc-c-cee-cCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHH--HHHCCc
Q 001989 628 QGYQEMFNNLGEWLCTITGFDS-F-SLQ-PNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPAT--AAMCGM 702 (985)
Q Consensus 628 ~G~~~~~~e~~~~la~l~G~~~-~-~~~-~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~--a~~~G~ 702 (985)
+.+.++++++++.+++++|.+. . .++ .++|++++ .+++.++.. . .++|++++....|-+++.. ++..|+
T Consensus 54 ~~~~~~~~~ar~~la~ll~~~~~~evif~t~~~T~a~---n~a~~~l~~-~--~~Gd~v~~~~~g~~~~~~~~~a~~~G~ 127 (377)
T 3e77_A 54 SDFAKIINNTENLVRELLAVPDNYKVIFLQGGGCGQF---SAVPLNLIG-L--KAGRCADYVVTGAWSAKAAEEAKKFGT 127 (377)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHH---HHHHHHHGG-G--STTCEEEECCCSHHHHHHHHHHTTTSE
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCCeEEEEcCchHHHH---HHHHHhccC-C--CCCCeEEEEECCHHHHHHHHHHHHhCC
Confidence 4567889999999999999975 2 344 35566655 444444421 1 1368887765544444433 456788
Q ss_pred EEEEEcCCCCCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCc
Q 001989 703 KIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGY 781 (985)
Q Consensus 703 ~vv~v~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~ 781 (985)
+++.+++++++..++++++.+++ ++|++|++++. |.+|++. |+ +|+++|++++||++|.++...+ +..+
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~i~---~~t~lV~~~h~et~tG~~~-pi-----i~~~~~~~~~vD~~q~~g~~~i-d~~~ 197 (377)
T 3e77_A 128 INIVHPKLGSYTKIPDPSTWNLN---PDASYVYYCANETVHGVEF-DF-----IPDVKGAVLVCDMSSNFLSKPV-DVSK 197 (377)
T ss_dssp EEECSCCCSSSCSCCCGGGCCCC---TTCSCEEEESEETTTTEEC-SS-----CCCCTTCCEEEECTTTTTSSCC-CGGG
T ss_pred ceEEeccCCCcCCCCChHHhccC---CCccEEEEeCccCchheEc-hh-----hhccCCCEEEEEcccccCCCCC-chhh
Confidence 88888887777778887776665 78999988875 5689999 77 4778999999999997554433 3445
Q ss_pred cCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCC---CCCCCCCCCCCCCCcchhhhHHHHHHHH
Q 001989 782 IGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGI---PAPEKSQPLGTIAAAPWGSALILPISYT 858 (985)
Q Consensus 782 ~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~---~~~~~~~~~~~i~s~~~g~~~~~~~a~a 858 (985)
++ ++++++||++ |+||+|++++++++.+.+++..... .+. ........|+++. +. .++ .+
T Consensus 198 ~~--~~~~s~~K~~------gp~G~g~l~~~~~~l~~~~~~~p~~-~~~~~~~~~~~~~~Tp~v~----~i-~~l---~~ 260 (377)
T 3e77_A 198 FG--VIFAGAQKNV------GSAGVTVVIVRDDLLGFALRECPSV-LEYKVQAGNSSLYNTPPCF----SI-YVM---GL 260 (377)
T ss_dssp CS--EEEEEGGGTT------SCTTCEEEEEETTSCSCCCTTSCGG-GCHHHHHTTTTCSSCCCHH----HH-HHH---HH
T ss_pred cC--EEEEeccccc------CCCccEEEEEcHHHHhhccCCCCch-hhHHHHhhcCCCCCCchHH----HH-HHH---HH
Confidence 54 6889999998 3468999999988776554321110 000 0001112233322 11 112 24
Q ss_pred HHHHhcHH-HHHHHHHHHHHHHHHHHHHhhccCCee-ecCCCCcee-eEEEEEecCccccCCCCH-----HHHHHHHHHC
Q 001989 859 YIAMMGSK-GLTEASKIAILNANYMAKRLEKHYPIL-FRGVNGTVA-HEFIVDLRGLKNTAGIEP-----EDVAKRLMDY 930 (985)
Q Consensus 859 ~l~~lg~e-Gl~~~~~~~~~~a~~l~~~L~~g~~l~-~~~~~~~~~-~~~iv~~~~~~~~~g~~~-----~~v~~~L~~~ 930 (985)
.++.+..+ |+.++.++..+++++++++|++..++. ...+..... ..+.+.++ ++++ ..+.+.|.++
T Consensus 261 al~~l~~~GG~~~i~~~~~~l~~~l~~~L~~~~g~~~~~~~~~~rs~~ivsf~~~------~~~~~~~~~~~~l~~l~~~ 334 (377)
T 3e77_A 261 VLEWIKNNGGAAAMEKLSSIKSQTIYEIIDNSQGFYVCPVEPQNRSKMNIPFRIG------NAKGDDALEKRFLDKALEL 334 (377)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTSTTSEECCSCGGGBCSSEEEEEES------STTCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHHHHHHHhcCCceecCCCHHHcCCcEEEEEcC------CCCCchhHHHHHHHHHHHC
Confidence 45555566 788888999999999999998732232 111111111 12445554 3322 3567778889
Q ss_pred CCccCCCCCCCCCEEEEeccCCCCHHHHHHHHccCChhHHHHh
Q 001989 931 GFHGPTMSWPVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHR 973 (985)
Q Consensus 931 Gi~~~~~~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~ 973 (985)
||.+..-. ...+++|+|+..++|+||||+ +++.|+++.++
T Consensus 335 Gi~~~~g~-~~~g~iRiS~~~~~t~edId~--l~~al~~~~~~ 374 (377)
T 3e77_A 335 NMLSLKGH-RSVGGIRASLYNAVTIEDVQK--LAAFMKKFLEM 374 (377)
T ss_dssp TEESCBCC-TTTCSEEEECCTTSCHHHHHH--HHHHHHHHHHH
T ss_pred CcEEeCCC-CcCCEEEEECCCCCCHHHHHH--HHHHHHHHHHH
Confidence 99874321 123679999999999999999 78888888765
|
| >2fnu_A Aminotransferase; protein-product complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PMP UD1; 1.50A {Helicobacter pylori} SCOP: c.67.1.4 PDB: 2fni_A* 2fn6_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=1.2e-19 Score=206.24 Aligned_cols=309 Identities=12% Similarity=0.002 Sum_probs=196.8
Q ss_pred HHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcCCCCC
Q 001989 634 FNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKG 713 (985)
Q Consensus 634 ~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~d~~g 713 (985)
..++++.+++++|.+ ..++.++|++|+..++.+++. . .+++++|+++...|..+...+...|++++.+++++++
T Consensus 34 ~~~l~~~la~~~~~~-~v~~~~ggt~al~~~~~~~~~----~-~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 107 (375)
T 2fnu_A 34 SLLFEEALCEFLGVK-HALVFNSATSALLTLYRNFSE----F-SADRNEIITTPISFVATANMLLESGYTPVFAGIKNDG 107 (375)
T ss_dssp HHHHHHHHHHHHTCS-EEEEESCHHHHHHHHHHHSSC----C-CTTSCEEEECSSSCTHHHHHHHHTTCEEEECCBCTTS
T ss_pred HHHHHHHHHHHhCCC-eEEEeCCHHHHHHHHHHHhcc----c-CCCCCEEEECCCccHhHHHHHHHCCCEEEEeccCCCC
Confidence 558889999999987 345667788777555544310 0 1367899999998888887788899999999998888
Q ss_pred CCCHHHHHHHHHhcCCCEEEEEEEcCCCccccccCHHHHHHHHHHcCCEEEEEccccccccCCC-CCCccC-CcEEEeCC
Q 001989 714 NINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLT-SPGYIG-ADVCHLNL 791 (985)
Q Consensus 714 ~iD~e~L~~~i~~~~~~t~~Vvv~~pn~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~-~pg~~g-~Di~~~s~ 791 (985)
.+|+++|+++++ +++++|++++| +|.+. |+++|.++|+++|+++|+|++|..+..... ..+.++ +++.+++.
T Consensus 108 ~~d~~~l~~~i~---~~~~~v~~~~~--tG~~~-~l~~i~~l~~~~~~~li~D~a~~~~~~~~~~~~~~~~~i~~~s~s~ 181 (375)
T 2fnu_A 108 NIDELALEKLIN---ERTKAIVSVDY--AGKSV-EVESVQKLCKKHSLSFLSDSSHALGSEYQNKKVGGFALASVFSFHA 181 (375)
T ss_dssp SBCGGGSGGGCC---TTEEEEEEECG--GGCCC-CHHHHHHHHHHHTCEEEEECTTCTTCEETTEETTSSSSEEEEECCT
T ss_pred CCCHHHHHhhcC---cCceEEEEeCC--cCCcc-CHHHHHHHHHHcCCEEEEECccccCCeECCeeccccCCeEEEeCCC
Confidence 899999999987 78999888887 89998 899999999999999999999864321111 123333 33445555
Q ss_pred cccccccCCCCCCceEEEEE-c-ccccCcCCCC-ccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHHH
Q 001989 792 HKTFCIPHGGGGPGMGPIGV-K-KHLAPFLPSH-PVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGL 868 (985)
Q Consensus 792 hK~l~~p~g~GGPg~G~i~~-~-~~l~~~lp~~-~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl 868 (985)
||+|+ ||.|++++ + +++.+.+... ..+.. +...+..+..+.+.. +......+ +.+. ...+++
T Consensus 182 ~K~~~-------~g~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~--~~~~~~~~--a~~~---~~~~~~ 246 (375)
T 2fnu_A 182 IKPIT-------TAEGGAVVTNDSELHEKMKLFRSHGML-KKDFFEGEVKSIGHN--FRLNEIQS--ALGL---SQLKKA 246 (375)
T ss_dssp TSSSC-------CSSCEEEEESCHHHHHHHHHHTBTTEE-ESSSSCEEESSCCCB--CCCCHHHH--HHHH---HHHTTH
T ss_pred CCCcc-------ccCceEEEeCCHHHHHHHHHHHhcCCc-ccccccccccccccc--CCCCHHHH--HHHH---HHHHHH
Confidence 69873 24666666 3 4443322110 00100 000000000011110 00011111 1111 123566
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCeeecCC--C-CceeeEEEEEecCccccCCC-CHHHHHHHHHHCCCccCCCCCC----
Q 001989 869 TEASKIAILNANYMAKRLEKHYPILFRGV--N-GTVAHEFIVDLRGLKNTAGI-EPEDVAKRLMDYGFHGPTMSWP---- 940 (985)
Q Consensus 869 ~~~~~~~~~~a~~l~~~L~~g~~l~~~~~--~-~~~~~~~iv~~~~~~~~~g~-~~~~v~~~L~~~Gi~~~~~~~p---- 940 (985)
.+..++..++++++.+.|++..++.+.++ . ....+.+.+.++. .+. +..++.+.|.++||.+.....|
T Consensus 247 ~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~L~~~gi~v~~~~~p~~~~ 322 (375)
T 2fnu_A 247 PFLMQKREEAALTYDRIFKDNPYFTPLHPLLKDKSSNHLYPILMHQ----KFFTCKKLILESLHKRGILAQVHYKPIYQY 322 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCSSEEESGGGCSSCCCCSCEEEEECG----GGGGGHHHHHHHHHHTTEECBCCCCCGGGS
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCccccCCCCCCCcceEEEEEEeCc----cccchHHHHHHHHHHCCCCccccccccccc
Confidence 77777888899999999987323322221 0 1112223455541 123 5788999999999987621112
Q ss_pred -----------C-------CCEEEEeccCCCCHHHHHHHHccCChhHHHHhhc
Q 001989 941 -----------V-------PGTLMIEPTESESKSWTGIVMLSSPSEKKLHRLK 975 (985)
Q Consensus 941 -----------~-------~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~~ 975 (985)
. .+.+||+++..+|++||++ +++.|++++++++
T Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~lRi~~~~~~t~~~i~~--~~~~l~~~~~~~~ 373 (375)
T 2fnu_A 323 QLYQQLFNTAPLKSAEDFYHAEISLPCHANLNLESVQN--IAHSVLKTFESFK 373 (375)
T ss_dssp HHHHHHHCCCCCHHHHHHHHHEEEECCCTTCCHHHHHH--HHHHHHHHHHHHC
T ss_pred hhhhcCCCccCChHHHHHHhCEEEecCCCCCCHHHHHH--HHHHHHHHHHHhc
Confidence 1 1679999999999999999 8899999887764
|
| >3n0l_A Serine hydroxymethyltransferase; alpha beta class, 3-layer(ABA) sandwich, CSGI transferase, structural genomics; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.83 E-value=3.7e-19 Score=205.31 Aligned_cols=302 Identities=17% Similarity=0.129 Sum_probs=196.6
Q ss_pred hHHHHHHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHH---HHHH--CCcE
Q 001989 629 GYQEMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPA---TAAM--CGMK 703 (985)
Q Consensus 629 G~~~~~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~---~a~~--~G~~ 703 (985)
...++.+.+++++++++|.+...+++++|++|++.++.++. .++|+|++++..|+.+.. .... .++.
T Consensus 68 ~~~~~~~~~~~~la~~~g~~~~~i~~~sGt~a~~~~~~~~~--------~~gd~vl~~~~~~~~~~~~~~~~~~~g~~~~ 139 (417)
T 3n0l_A 68 FVDEIETLAIERCKKLFNCKFANVQPNSGSQANQGVYAALI--------NPGDKILGMDLSHGGHLTHGAKVSSSGKMYE 139 (417)
T ss_dssp HHHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHHHHHHS--------CTTCEEEEECC----------------CCSE
T ss_pred HHHHHHHHHHHHHHHHhCCCCcceEeccHHHHHHHHHHHhc--------CCCCEEEecccccccccchhhhhhhhcceee
Confidence 34455556778999999998776777888877765554431 478999998887765433 2222 4567
Q ss_pred EEEEcCCCCCCCCHHHHHHHHHhcCCCEEEEEEEcCCCccccccCHHHHHHHHHHcCCEEEEEccccccccCCC-CCCc-
Q 001989 704 IVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLT-SPGY- 781 (985)
Q Consensus 704 vv~v~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~pn~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~-~pg~- 781 (985)
++.++++.++.+|+++|++++++ +++++|++++|++ |.+. |+++|.++|+++|+++|+|++|..+..... .+..
T Consensus 140 ~~~~~~~~~~~~d~~~l~~~i~~--~~~~~v~~~~~~~-G~~~-~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~ 215 (417)
T 3n0l_A 140 SCFYGVELDGRIDYEKVREIAKK--EKPKLIVCGASAY-ARVI-DFAKFREIADEIGAYLFADIAHIAGLVVAGEHPSPF 215 (417)
T ss_dssp EEEECCCTTSSCCHHHHHHHHHH--HCCSEEEECCSSC-CSCC-CHHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCCT
T ss_pred eEeccCCCCCCcCHHHHHHHHHh--cCCeEEEECCccc-CccC-CHHHHHHHHHHcCCEEEEECccchhhhhcccCCCcc
Confidence 77788887788999999999973 3678888888874 8887 899999999999999999999753322100 1111
Q ss_pred cCCcEEEeCCcccccccCCCCCCceEEEEEc-ccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHH
Q 001989 782 IGADVCHLNLHKTFCIPHGGGGPGMGPIGVK-KHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYI 860 (985)
Q Consensus 782 ~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~-~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l 860 (985)
.++|++++|+||+| +||.+|+++++ +++.+.+...... ..+++. ....+++..+.+
T Consensus 216 ~~~di~~~s~sK~l------~g~~~G~~~~~~~~~~~~~~~~~~~-----------~~~~~~------~~~~~aa~~~a~ 272 (417)
T 3n0l_A 216 PYAHVVSSTTHKTL------RGPRGGIIMTNDEELAKKINSAIFP-----------GIQGGP------LMHVIAAKAVGF 272 (417)
T ss_dssp TTCSEEEEESSTTT------CSCSCEEEEESCHHHHHHHHHHHTT-----------TTCSSC------CHHHHHHHHHHH
T ss_pred ccceEEEeeCcccc------CCCCeeEEEECCHHHHHHHhhhhCC-----------cccCCc------HHHHHHHHHHHH
Confidence 14799999999988 35667999988 4555433211000 000111 111122223344
Q ss_pred HHhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCCC
Q 001989 861 AMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSW 939 (985)
Q Consensus 861 ~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~~ 939 (985)
.....+++.+..++..++++++.+.|++ ++.+...+ ...+.+.+.++. .+.+..++.+.|.++||.+.....
T Consensus 273 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~---~~~~~~~~~~~~----~~~~~~~~~~~l~~~gi~v~~~~~ 345 (417)
T 3n0l_A 273 KFNLSDEWKVYAKQVRTNAQVLANVLMDRKFKLVSDG---TDNHLVLMSFLD----REFSGKDADLALGNAGITANKNTV 345 (417)
T ss_dssp HHHTSHHHHHHHHHHHHHHHHHHHHHHHTTCEEGGGS---CSSSEEEEECTT----SSSCHHHHHHHHHHTTEECEECCC
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHhCCceeccCC---CCceEEEEEccc----CCCCHHHHHHHHHHcCeEEecccc
Confidence 4444456777788888999999999987 44443211 122234566542 245788999999999998753221
Q ss_pred C-------CCCEEEEeccC----CCCHHHHHHHHccCChhHHHHhh
Q 001989 940 P-------VPGTLMIEPTE----SESKSWTGIVMLSSPSEKKLHRL 974 (985)
Q Consensus 940 p-------~~~~lris~t~----~~t~eeId~~~~~~~l~~~~~~~ 974 (985)
| ..+.+|++++. ..+++||++ +++.|+++++..
T Consensus 346 ~~~~~~~~~~~~~ri~~~~~~~~~~~~~~i~~--~~~~l~~~l~~~ 389 (417)
T 3n0l_A 346 PGEIRSPFITSGLRLGTPALTARGFKEKEMEI--VSNYIADILDDV 389 (417)
T ss_dssp TTCCSCTTTCSEEEEECHHHHHTTCCHHHHHH--HHHHHHHHHHTT
T ss_pred CCCCcccCCCCeeEecCHHHhhCCCCHHHHHH--HHHHHHHHHhcc
Confidence 1 23679998764 367999999 778888887653
|
| >1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP; 1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A* 1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=3.7e-19 Score=203.73 Aligned_cols=299 Identities=15% Similarity=0.123 Sum_probs=194.7
Q ss_pred hhHHHHHHHHHHHHHHHhCCC--ccce-ecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEE
Q 001989 628 QGYQEMFNNLGEWLCTITGFD--SFSL-QPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKI 704 (985)
Q Consensus 628 ~G~~~~~~e~~~~la~l~G~~--~~~~-~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~v 704 (985)
+|..++.+++.+++.+..|.+ ...+ +.++|++|+..++ +.+. .++|+|+++.+.|..+...++..|+++
T Consensus 68 ~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~g~~~al~~~~---~~l~-----~~gd~Vlv~~p~y~~~~~~~~~~g~~~ 139 (385)
T 1b5p_A 68 AGIPELREALAEKFRRENGLSVTPEETIVTVGGSQALFNLF---QAIL-----DPGDEVIVLSPYWVSYPEMVRFAGGVV 139 (385)
T ss_dssp TCCHHHHHHHHHHHHHTTCCCCCGGGEEEESHHHHHHHHHH---HHHC-----CTTCEEEEEESCCTHHHHHHHHTTCEE
T ss_pred CCCHHHHHHHHHHHHHHhCCCCChHHEEEcCChHHHHHHHH---HHhc-----CCCCEEEEcCCCchhHHHHHHHcCCEE
Confidence 455566666666666666753 3344 4455566654333 3321 478899999888877777788899999
Q ss_pred EEEcCCC--CCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccc--cCHHHHHHHHHHcCCEEEEEccccccc-cC-CC
Q 001989 705 VSVGTDA--KGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYE--EGIDEICKIIHDNGGQVYMDGANMNAQ-VG-LT 777 (985)
Q Consensus 705 v~v~~d~--~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~--~di~eI~~la~~~galliVD~a~~~~~-~~-l~ 777 (985)
+.+|+++ ++.+|+++|+++++ +++++|++++| |++|.+. .++++|+++|+++|+++++|+++.... .+ ..
T Consensus 140 ~~v~~~~~~~~~~d~~~l~~~l~---~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~ 216 (385)
T 1b5p_A 140 VEVETLPEEGFVPDPERVRRAIT---PRTKALVVNSPNNPTGAVYPKEVLEALARLAVEHDFYLVSDEIYEHLLYEGEHF 216 (385)
T ss_dssp EEEECCGGGTTCCCHHHHHTTCC---TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCC
T ss_pred EEeecCcccCCCCCHHHHHHhcC---CCCEEEEEeCCCCCCCCCcCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCC
Confidence 9999975 46799999999987 68999999999 4699984 259999999999999999999985311 11 11
Q ss_pred CCCcc--CCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHH
Q 001989 778 SPGYI--GADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPI 855 (985)
Q Consensus 778 ~pg~~--g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~ 855 (985)
....+ +.++++.|++|+|+.| |.++|++++++++.+.+.... ...+.+.+ .....+
T Consensus 217 ~~~~~~~~~~i~~~s~SK~~~~~----G~RiG~~~~~~~~~~~l~~~~------------~~~~~~~~------~~~~~a 274 (385)
T 1b5p_A 217 SPGRVAPEHTLTVNGAAKAFAMT----GWRIGYACGPKEVIKAMASVS------------RQSTTSPD------TIAQWA 274 (385)
T ss_dssp CGGGTCTTTEEEEEESTTTTTCG----GGCCEEEECCHHHHHHHHHHH------------HTTTCSCC------HHHHHH
T ss_pred CHHHcCCCCEEEEEechhhcCCc----ccceEEEEeCHHHHHHHHHHH------------hhccCCCC------HHHHHH
Confidence 11222 4578899999998543 456999999876654332100 00111211 111112
Q ss_pred HHHHHHH--hcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCC
Q 001989 856 SYTYIAM--MGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGF 932 (985)
Q Consensus 856 a~a~l~~--lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi 932 (985)
+.++|.. .+.+.+++..++..++++++.+.|++ ++.+. .+.+.++ +.+.++. .+.+..++.+.|.++||
T Consensus 275 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~--~~~~~~~--~~~~~~~----~~~~~~~l~~~l~~~gv 346 (385)
T 1b5p_A 275 TLEALTNQEASRAFVEMAREAYRRRRDLLLEGLTALGLKAV--RPSGAFY--VLMDTSP----IAPDEVRAAERLLEAGV 346 (385)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCBC--CCSBTTE--EEEECTT----TCSSHHHHHHHHHHTTE
T ss_pred HHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHHCCCeec--CCCeeEE--EEEecCC----CCCCHHHHHHHHHHCCe
Confidence 2233322 13344666667778888999999987 44432 2222222 2344431 14578899999999999
Q ss_pred ccCC-CCCCCCCEEEEeccCCCCHHHHHHHHccCChhHHH
Q 001989 933 HGPT-MSWPVPGTLMIEPTESESKSWTGIVMLSSPSEKKL 971 (985)
Q Consensus 933 ~~~~-~~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~~ 971 (985)
.+.. ..++.++++||++. +++++|++ .++.|++++
T Consensus 347 ~v~~g~~f~~~~~iRis~~--~~~~~i~~--~l~~l~~~l 382 (385)
T 1b5p_A 347 AVVPGTDFAAFGHVRLSYA--TSEENLRK--ALERFARVL 382 (385)
T ss_dssp ECEESGGGTCTTEEEEECC--SCHHHHHH--HHHHGGGGC
T ss_pred EEecccccCCCCeEEEEec--CCHHHHHH--HHHHHHHHH
Confidence 8653 23333589999987 78999998 666666554
|
| >3m5u_A Phosphoserine aminotransferase; alpha-beta half sandwich, csgid, amino-acid biosynthesis, cytoplasm, pyridoxal phosphate; HET: MES; 2.15A {Campylobacter jejuni} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.83 E-value=4.8e-19 Score=200.50 Aligned_cols=314 Identities=11% Similarity=0.015 Sum_probs=207.5
Q ss_pred cCCCCCCCCCcHHHHHHHHhCCcccccc--CCChh----hHhhhHHHHHHHHHHHHHHhcCCCC-cceee-ccchHHHHH
Q 001989 171 IGMGYYNTHVPPVILRNIMENPAWYTQY--TPYQA----EIAQGRLESLLNFQTMIADLTGLPM-SNASL-LDEGTAAAE 242 (985)
Q Consensus 171 lG~g~y~~~~p~~v~~~i~~~~~~~t~~--~pyq~----e~sqg~l~~i~e~q~~ia~L~g~~~-~~~sl-~~~~ta~~e 242 (985)
+++| |..+|+.|.+++..- +..| +|... ..++...+.+.++++.+++|+|++. .++.+ +.|+|.+++
T Consensus 9 f~pg--pt~~~~~V~~a~~~~---~~~~~~~~~s~~~~~hr~~~~~~~~~~~r~~la~ll~~~~~~~v~f~t~~~T~a~n 83 (361)
T 3m5u_A 9 FSAG--PSTLPLEILEQAQKE---LCDYQGRGYSIMEISHRTKVFEEVHFGAQEKAKKLYELNDDYEVLFLQGGASLQFA 83 (361)
T ss_dssp CCSS--SCCCCHHHHHHHHHT---SSSGGGSSSCGGGSCSSSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHH
T ss_pred ecCC--CCCCcHHHHHHHHHH---HHhcccCCceeeccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCcHHHHHH
Confidence 4566 556888887665542 2222 22111 1234557899999999999999974 46776 888998877
Q ss_pred HHHHHhhhhcCCCCEE--EEc-CCCChhHHHHHHHhhcCCCeEEEEeCchh-------h--hccCCCEeEEEEEcC-CCC
Q 001989 243 AMAMCNNIQKGKKKTF--IIA-SNCHPQTIDICITRADGFDIKVVVSDLKD-------I--DYKSGDVCGVLVQYP-GTE 309 (985)
Q Consensus 243 a~~~a~~~~~~~g~~V--lv~-~~~H~s~~~~~~~~a~~~gi~v~~v~~~~-------l--~~l~~~t~~V~v~~p-n~~ 309 (985)
+++..+. ++|++ +++ ...|+ |...++..|+++++++.+. . + ++++|++|.+++. |.+
T Consensus 84 ~~~~~~~----~~~~~~~i~~~~~~~~-----~~~~a~~~G~~v~~~~~~~~g~~~~~~~~~-l~~~t~lv~~~~~e~~t 153 (361)
T 3m5u_A 84 MIPMNLA----LNGVCEYANTGVWTKK-----AIKEAQILGVNVKTVASSEESNFDHIPRVE-FSDNADYAYICSNNTIY 153 (361)
T ss_dssp HHHHHHC----CSSCEEEEECSHHHHH-----HHHHHHHTTCCEEEEEECTTTTSCSCCCCC-CCTTSSEEEEESEETTT
T ss_pred HHHHhcC----CCCeEEEEeCCHHHHH-----HHHHHHHcCCceEEEecccCcCCCcCChhh-cCCCCCEEEEeCCCCCc
Confidence 7766542 44543 333 23332 2233445677777765421 1 2 6778999988864 889
Q ss_pred eeeccHHHHHHHHHhCCcEEEEEecCccccCCC-CCCcccceEEEecCccccccCCCCCCcEEEEEEchhhHhcCCCcee
Q 001989 310 GEVLDYGDFIKNAHANGVKVVMATDLLALTILK-PPGELGADIVVGSAQRFGVPMGYGGPHAAFLATSQEYKRMMPGRIV 388 (985)
Q Consensus 310 G~v~di~~I~~~a~~~galliV~a~~~~lg~l~-~~~~~GaDi~v~s~k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~v 388 (985)
|++.|. | ++ +|++++||+ ..++|.+. +.. ++|++++++||+.+| ||+|++++++++++.+++...
T Consensus 154 G~~~~~--i---~~-~~~~~~vD~-~q~~g~~~id~~--~~d~~~~s~~K~~gp-----~G~g~l~~~~~~~~~~~~~~~ 219 (361)
T 3m5u_A 154 GTQYQN--Y---PK-TKTPLIVDA-SSDFFSRKVDFS--NIALFYGGVQKNAGI-----SGLSCIFIRKDMLERSKNKQI 219 (361)
T ss_dssp TEECSS--C---CC-CSSCEEEEC-GGGTTSSCCCCT--TEEEEEEETTTTSSC-----TTCEEEEEEHHHHHHHHTCCC
T ss_pred ceeCCc--c---cc-cCCEEEEEc-ccccCCCCCCcc--cCCEEEEechhccCC-----CccEEEEEcHHHHhhhcCCCC
Confidence 998662 3 33 499999964 44666543 223 479999999555235 578999999998877644211
Q ss_pred eeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcc-hHHHHHHHHHHHHHHHHHHHhcCCCe
Q 001989 389 GVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPE-GLKTIAQRVHGLAGTFALGLKKLGTV 467 (985)
Q Consensus 389 G~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~-Gl~~i~~~~~~~a~~l~~~L~~~g~~ 467 (985)
. ..+++....+ .....+|+|+ .+++++.+++ .++..+ |++++.++..+++++++++|+++|++
T Consensus 220 p----------~~~~~~~~~~-~~~~~~Tp~v---~~i~~l~~al--~~l~~~gG~~~i~~~~~~l~~~l~~~L~~~~g~ 283 (361)
T 3m5u_A 220 P----------SMLNYLTHAE-NQSLFNTPPT---FAIYMFNLEM--DWLLNQGGLDKVHEKNSQKATMLYECIDLSNGF 283 (361)
T ss_dssp C----------GGGCHHHHHH-TTTCSSCCCH---HHHHHHHHHH--HHHHTTTCHHHHHHHHHHHHHHHHHHHHTSTTS
T ss_pred C----------ceeehHHHhh-cCCCCCCccH---HHHHHHHHHH--HHHHHccCHHHHHHHHHHHHHHHHHHHHHCCCe
Confidence 1 0111110100 1122378887 6777888876 666677 89999999999999999999999755
Q ss_pred -EEcCCC--Cc-ceEEEecCC----HHHHHHHHHHcCceeeee--cCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 468 -EVQGLP--FF-DTVKVKCAD----AHAIASAAYKIEMNLRVV--DSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 468 -~~~~~~--~~-~~~~~~~~~----~~~v~~~L~~~GI~~~~~--~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
+++.++ .. ..++|.+++ ..++.+.|.++||.++.- ..+.+|+|++.+||+||||+|+++|++
T Consensus 284 ~~~~~~~~~rs~~ivsf~~~~~~~~~~~~~~~L~~~gI~~~~g~~~~g~iRiS~~~~~t~edId~l~~al~~ 355 (361)
T 3m5u_A 284 YKGHADKKDRSLMNVSFNIAKNKDLEPLFVKEAEEAGMIGLKGHRILGGIRASIYNALNLDQVKTLCEFMKE 355 (361)
T ss_dssp EEESSCGGGBCSSEEEEEESSCTTHHHHHHHHHHHTTEECCBCCTTTCSEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eeccCCHHHcCCeEEEEECCCchhhhHHHHHHHHHCCCEEecCCCccCeEEEEccCCCCHHHHHHHHHHHHH
Confidence 664321 22 246676653 347888999999987532 126799999999999999999999974
|
| >1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence O substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=2.1e-19 Score=205.62 Aligned_cols=302 Identities=17% Similarity=0.164 Sum_probs=199.5
Q ss_pred hhHHHHHHHHHHHHHHHhCC--Cc-c-ceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcE
Q 001989 628 QGYQEMFNNLGEWLCTITGF--DS-F-SLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMK 703 (985)
Q Consensus 628 ~G~~~~~~e~~~~la~l~G~--~~-~-~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~ 703 (985)
+|..++.+++.+++.+.+|. +. . .++.++|++|+..++.++ ..++++|++++..|..+...++..|++
T Consensus 63 ~g~~~l~~~la~~~~~~~g~~~~~~~~v~~~~g~~~a~~~~~~~~--------~~~gd~vl~~~~~~~~~~~~~~~~g~~ 134 (389)
T 1gd9_A 63 IGLLELREAIAEKLKKQNGIEADPKTEIMVLLGANQAFLMGLSAF--------LKDGEEVLIPTPAFVSYAPAVILAGGK 134 (389)
T ss_dssp TCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESSTTHHHHHHHTTT--------CCTTCEEEEEESCCTTHHHHHHHHTCE
T ss_pred CCcHHHHHHHHHHHHHHhCCCCCCCCeEEEcCChHHHHHHHHHHh--------CCCCCEEEEcCCCchhHHHHHHHCCCE
Confidence 45555566666666666684 33 3 345566777665444332 136789999888888887778889999
Q ss_pred EEEEcCCC--CCCCCHHHHHHHHHhcCCCEEEEEEEcCC-Ccccccc--CHHHHHHHHHHcCCEEEEEcccccccc-C--
Q 001989 704 IVSVGTDA--KGNINIEELRKAAEANRDNLSTLMVTYPS-THGVYEE--GIDEICKIIHDNGGQVYMDGANMNAQV-G-- 775 (985)
Q Consensus 704 vv~v~~d~--~g~iD~e~L~~~i~~~~~~t~~Vvv~~pn-~~G~i~~--di~eI~~la~~~galliVD~a~~~~~~-~-- 775 (985)
++.+|.++ ++.+|+++|+++++ +++++|++++|+ ++|.+.+ ++++|+++|+++|+++++|+++..... +
T Consensus 135 ~~~v~~~~~~~~~~d~~~l~~~l~---~~~~~v~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~ 211 (389)
T 1gd9_A 135 PVEVPTYEEDEFRLNVDELKKYVT---DKTRALIINSPCNPTGAVLTKKDLEEIADFVVEHDLIVISDEVYEHFIYDDAR 211 (389)
T ss_dssp EEEEECCGGGTTCCCHHHHHHHCC---TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCC
T ss_pred EEEeccCCccCCCCCHHHHHHhcC---cCceEEEEECCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEehhhhhcccCCCC
Confidence 99999875 35789999999997 689999999985 6898852 599999999999999999999853211 1
Q ss_pred CCCCC----ccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhH
Q 001989 776 LTSPG----YIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSAL 851 (985)
Q Consensus 776 l~~pg----~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~ 851 (985)
..... ..+.|+++.|+||+|+.| |.++|++++++++.+.+..... ..+.+. + ..
T Consensus 212 ~~~~~~~~~~~~~~i~~~s~sK~~~~~----G~r~G~~~~~~~~~~~l~~~~~------------~~~~~~--~----~~ 269 (389)
T 1gd9_A 212 HYSIASLDGMFERTITVNGFSKTFAMT----GWRLGFVAAPSWIIERMVKFQM------------YNATCP--V----TF 269 (389)
T ss_dssp CCCGGGSTTCGGGEEEEEESTTTTTCG----GGCCEEEECCHHHHHHHHHHHT------------TTTCSC--C----HH
T ss_pred CCCHhhccCCCCCEEEEecChhhcCCc----ccceEEEEECHHHHHHHHHHHh------------hhccCC--C----HH
Confidence 00111 145689999999998532 4568999998766544321100 001111 1 11
Q ss_pred HHHHHHHHHHHhcHH--HHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHH
Q 001989 852 ILPISYTYIAMMGSK--GLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLM 928 (985)
Q Consensus 852 ~~~~a~a~l~~lg~e--Gl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~ 928 (985)
...++.++|.. +.+ .+.+..++..++++++.+.|++ ++.+. .+.+..+ +.+.++. .+.+..++.++|.
T Consensus 270 ~~~a~~~~l~~-~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~--~~~~~~~--~~~~~~~----~~~~~~~~~~~l~ 340 (389)
T 1gd9_A 270 IQYAAAKALKD-ERSWKAVEEMRKEYDRRRKLVWKRLNEMGLPTV--KPKGAFY--IFPRIRD----TGLTSKKFSELML 340 (389)
T ss_dssp HHHHHHHHHTC-HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCC--CCCBTTE--ECCBCGG----GTCCHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCcchHHHHHHHHHHHHHHHHHHHHHHcCCeec--CCCeeeE--EEEeccC----CCCCHHHHHHHHH
Confidence 12222333332 223 5667777788889999999987 44432 2222221 2234431 1457889999998
Q ss_pred -HCCCccCCCC-CC--CCCEEEEeccCCCCHHHHHHHHccCChhHHHHhhc
Q 001989 929 -DYGFHGPTMS-WP--VPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRLK 975 (985)
Q Consensus 929 -~~Gi~~~~~~-~p--~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~~ 975 (985)
++||.+.... +. ..+.+||+++. ++++|++ +++.|++++++.+
T Consensus 341 ~~~gi~v~~g~~~~~~~~~~iRi~~~~--~~~~i~~--~l~~l~~~~~~~~ 387 (389)
T 1gd9_A 341 KEARVAVVPGSAFGKAGEGYVRISYAT--AYEKLEE--AMDRMERVLKERK 387 (389)
T ss_dssp HHTCEECEEGGGGCGGGTTBEEEECCS--CHHHHHH--HHHHHHHHHHHTT
T ss_pred HhCCEEEeCchhhCCCCCCeEEEEecC--CHHHHHH--HHHHHHHHHHhcc
Confidence 8999875322 21 24789999985 8999999 7788888887654
|
| >4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=2.6e-19 Score=204.67 Aligned_cols=296 Identities=11% Similarity=0.082 Sum_probs=198.0
Q ss_pred HHHHHHHHHHHHHHhC--CCccc-eecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEE
Q 001989 631 QEMFNNLGEWLCTITG--FDSFS-LQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSV 707 (985)
Q Consensus 631 ~~~~~e~~~~la~l~G--~~~~~-~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v 707 (985)
.+..+++++++++++| .+... ++.++|++++..++.++. .++++|+++.+.|..+...++..|++++.+
T Consensus 70 ~~~~~~l~~~l~~~~g~~~~~~~v~~~~g~~~a~~~~~~~~~--------~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~ 141 (391)
T 4dq6_A 70 DSYNESIVNWLYRRHNWKIKSEWLIYSPGVIPAISLLINELT--------KANDKIMIQEPVYSPFNSVVKNNNRELIIS 141 (391)
T ss_dssp HHHHHHHHHHHHHHHCCCCCGGGEEEESCHHHHHHHHHHHHS--------CTTCEEEECSSCCTHHHHHHHHTTCEEEEC
T ss_pred HHHHHHHHHHHHHHhCCCCcHHHeEEcCChHHHHHHHHHHhC--------CCCCEEEEcCCCCHHHHHHHHHcCCeEEee
Confidence 4667788999999999 44444 455667766655444331 367899999888877777788899999999
Q ss_pred cCC--CC--CCCCHHHHHHHHHhcCCCEEEEEEEcC-CCcccc---ccCHHHHHHHHHHcCCEEEEEccccccc-cCC--
Q 001989 708 GTD--AK--GNINIEELRKAAEANRDNLSTLMVTYP-STHGVY---EEGIDEICKIIHDNGGQVYMDGANMNAQ-VGL-- 776 (985)
Q Consensus 708 ~~d--~~--g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i---~~di~eI~~la~~~galliVD~a~~~~~-~~l-- 776 (985)
|++ .+ +.+|+++|+++++ + +++|++++| |++|.+ + ++++|+++|+++|+++|+|++|.... .+-
T Consensus 142 ~~~~~~~~~~~~d~~~l~~~l~---~-~~~v~i~~p~nptG~~~~~~-~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~ 216 (391)
T 4dq6_A 142 PLQKLENGNYIMDYEDIENKIK---D-VKLFILCNPHNPVGRVWTKD-ELKKLGDICLKHNVKIISDEIHSDIILKKHKH 216 (391)
T ss_dssp CCEECTTSCEECCHHHHHHHCT---T-EEEEEEESSBTTTTBCCCHH-HHHHHHHHHHHTTCEEEEECTTTTCBCTTCCC
T ss_pred eeeecCCCceEeeHHHHHHHhh---c-CCEEEEECCCCCCCcCcCHH-HHHHHHHHHHHcCCEEEeeccccccccCCCCc
Confidence 987 23 3589999999997 5 999999999 469998 5 69999999999999999999984211 110
Q ss_pred CCCCccC-----CcEEEeCCcccccccCCCCCCceEEEEEcc-cccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhh
Q 001989 777 TSPGYIG-----ADVCHLNLHKTFCIPHGGGGPGMGPIGVKK-HLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSA 850 (985)
Q Consensus 777 ~~pg~~g-----~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~-~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~ 850 (985)
.....+. ..+++.|+||+|+. +|.++|++++++ ++.+.+...... ..+.+. +.
T Consensus 217 ~~~~~~~~~~~~~~i~~~s~sK~~g~----~G~r~G~~~~~~~~~~~~~~~~~~~-----------~~~~~~------~~ 275 (391)
T 4dq6_A 217 IPMASISKEFEKNTITCMAPTKTFNI----AGLQSSYVVLPDEKDYKLLDDAFTR-----------IDIKRN------NC 275 (391)
T ss_dssp CCGGGSCHHHHHTEEEEECSHHHHTC----GGGCCEEEECCSHHHHHHHHHHHHH-----------TTCCCC------CH
T ss_pred cCHHHcCccccCcEEEEEechhhccC----cccceEEEEeCCHHHHHHHHHHHHh-----------hcCCCC------CH
Confidence 0111222 23888999999954 356789998875 555443211000 001111 11
Q ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHH
Q 001989 851 LILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMD 929 (985)
Q Consensus 851 ~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~ 929 (985)
....++.+.+.. +.+.+.+..++..++++++.+.|++ ...+....+.+..+ +.++++. .+.+..++.++|.+
T Consensus 276 ~~~~a~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~--~~~~~~~----~~~~~~~~~~~l~~ 348 (391)
T 4dq6_A 276 FSLVATEASYNN-GESWLESFLEYLESNIDFAIKYINENMPKLKVRKPEGTYL--LWVDFSA----LGLSDEELESILVQ 348 (391)
T ss_dssp HHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHHHHHHCTTSEECCCSBSSE--EEEECGG----GCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhc-hHHHHHHHHHHHHHHHHHHHHHHHhhCCCCEecCCCccEE--EEEEhhh----cCCCHHHHHHHHHH
Confidence 222333344443 3445667777788889999999976 22332222222222 2355541 14578899999999
Q ss_pred C-CCccCCC-CC--CCCCEEEEeccCCCCHHHHHHHHccCChhHHH
Q 001989 930 Y-GFHGPTM-SW--PVPGTLMIEPTESESKSWTGIVMLSSPSEKKL 971 (985)
Q Consensus 930 ~-Gi~~~~~-~~--p~~~~lris~t~~~t~eeId~~~~~~~l~~~~ 971 (985)
+ ||.+... .+ +..+.+||+++ ++++||++ +++.|++++
T Consensus 349 ~~gi~v~~g~~~~~~~~~~iRis~~--~~~~~i~~--~l~~l~~~l 390 (391)
T 4dq6_A 349 KGKVALNQGNSFGIGGSGYQRINLA--CPRSMLEE--ALIRIKNAI 390 (391)
T ss_dssp TTCEECEEGGGGCTTCTTEEEEECC--SCHHHHHH--HHHHHHHHH
T ss_pred hCCEEeeCchhhCCCCCCeEEEEEc--CCHHHHHH--HHHHHHHHh
Confidence 8 9987532 12 23489999998 68999999 767777654
|
| >1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate COA ligase, pyridoxal phosphate, COEN transferase, structural genomics; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.4 | Back alignment and structure |
|---|
Probab=99.82 E-value=8.5e-20 Score=209.83 Aligned_cols=293 Identities=13% Similarity=0.150 Sum_probs=200.3
Q ss_pred HHHHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcCCC
Q 001989 632 EMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDA 711 (985)
Q Consensus 632 ~~~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~d~ 711 (985)
....++++.+++++|.+ ..++.++|+++++.++. .+ ..++++|+++...|+.+...++..|++++.+|.
T Consensus 90 ~~~~~l~~~la~~~g~~-~~i~~~sGs~a~~~~~~---~~-----~~~gd~v~~~~~~~~~~~~~~~~~g~~~~~~~~-- 158 (401)
T 1fc4_A 90 DSHKELEQKLAAFLGME-DAILYSSCFDANGGLFE---TL-----LGAEDAIISDALNHASIIDGVRLCKAKRYRYAN-- 158 (401)
T ss_dssp HHHHHHHHHHHHHHTCS-EEEEESCHHHHHHTTHH---HH-----CCTTCEEEEETTCCHHHHHHHHTSCSEEEEECT--
T ss_pred HHHHHHHHHHHHHhCCC-cEEEeCChHHHHHHHHH---HH-----cCCCCEEEEcchhHHHHHHHHHHcCCceEEECC--
Confidence 44668899999999998 45667888876654433 32 136789999999898777778889999998884
Q ss_pred CCCCCHHHHHHHHHhcCC---CEEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCC-CC-----CC-
Q 001989 712 KGNINIEELRKAAEANRD---NLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGL-TS-----PG- 780 (985)
Q Consensus 712 ~g~iD~e~L~~~i~~~~~---~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l-~~-----pg- 780 (985)
+|+++|++++++.++ ++++|++++| |++|.+. |+++|.++|+++|+++|+|+++..+..+. .. .+
T Consensus 159 ---~d~~~l~~~l~~~~~~~~~~~~v~~~~~~nptG~~~-~~~~i~~l~~~~~~~li~De~~~~g~~~~~g~~~~~~~~~ 234 (401)
T 1fc4_A 159 ---NDMQELEARLKEAREAGARHVLIATDGVFSMDGVIA-NLKGVCDLADKYDALVMVDDSHAVGFVGENGRGSHEYCDV 234 (401)
T ss_dssp ---TCHHHHHHHHHHHHHTTCSSEEEEEESEETTTTEEC-CHHHHHHHHHHTTEEEEEECTTTTTTSSTTSCCHHHHTTC
T ss_pred ---CCHHHHHHHHHHhhccCCCceEEEEeCCcCCCCCCC-CHHHHHHHHHHcCCEEEEECcccccccCCCCCccHHHcCC
Confidence 489999999973212 7899999998 5799998 89999999999999999999984333210 00 01
Q ss_pred ccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHH
Q 001989 781 YIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYI 860 (985)
Q Consensus 781 ~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l 860 (985)
..+.|+++.|+||+|+ |++| |++++++++.+.+....... ..+.+. +...++++.+.+
T Consensus 235 ~~~~di~~~s~sK~~~-----~~~g-G~~~~~~~~~~~l~~~~~~~----------~~~~~~------~~~~~~a~~~~l 292 (401)
T 1fc4_A 235 MGRVDIITGTLGKALG-----GASG-GYTAARKEVVEWLRQRSRPY----------LFSNSL------APAIVAASIKVL 292 (401)
T ss_dssp TTCCSEEEEESSSTTC-----SSSC-EEEEECHHHHHHHHHHCHHH----------HHSCCC------CHHHHHHHHHHH
T ss_pred CcCCcEEEecchhhcc-----CCCC-EEEEcCHHHHHHHHHhCcCc----------eeCCCC------CHHHHHHHHHHH
Confidence 1257999999999984 2343 89998877655432100000 000111 112223333444
Q ss_pred HHhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCCC
Q 001989 861 AMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSW 939 (985)
Q Consensus 861 ~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~~ 939 (985)
..+.. ..+..++..++++++.+.|++ ++++. + +.+. + +.+.++. +.+..++.++|.++||.+....+
T Consensus 293 ~~~~~--~~~~~~~~~~~~~~l~~~L~~~g~~~~-~-~~~~-~--~~~~~~~-----~~~~~~l~~~l~~~gi~v~~~~~ 360 (401)
T 1fc4_A 293 EMVEA--GSELRDRLWANARQFREQMSAAGFTLA-G-ADHA-I--IPVMLGD-----AVVAQKFARELQKEGIYVTGFFY 360 (401)
T ss_dssp HHHHT--CHHHHHHHHHHHHHHHHHHHHTTCCBC-C-SSSS-E--EEEEEEC-----HHHHHHHHHHHHHTTEECCEECT
T ss_pred HHHhc--CHHHHHHHHHHHHHHHHHHHHcCCccc-C-CCCC-E--EEEEcCC-----hHHHHHHHHHHHHCCcEEeeecC
Confidence 44321 245566778889999999987 45543 2 2122 2 3455541 23467899999999998764332
Q ss_pred C----CCCEEEEeccCCCCHHHHHHHHccCChhHHHHhhc
Q 001989 940 P----VPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRLK 975 (985)
Q Consensus 940 p----~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~~ 975 (985)
+ ..+.+||+++..+|++|+++ +++.|++++++++
T Consensus 361 ~~~~~~~~~iRi~~~~~~~~~~i~~--~~~~l~~~~~~~~ 398 (401)
T 1fc4_A 361 PVVPKGQARIRTQMSAAHTPEQITR--AVEAFTRIGKQLG 398 (401)
T ss_dssp TSSCTTCEEEEEECCTTCCHHHHHH--HHHHHHHHHHHTT
T ss_pred CCCCCCCceEEEEeCCCCCHHHHHH--HHHHHHHHHHHhC
Confidence 2 13579999999999999999 8899999888764
|
| >3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase, transferase-transferase inhibitor complex; HET: PL8; 1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A* 3lv2_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=2.8e-19 Score=209.70 Aligned_cols=299 Identities=12% Similarity=0.107 Sum_probs=197.8
Q ss_pred HHHHHHHHHHHHhCCCc-cceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEE-cCCCCcccHHHHHHC----------
Q 001989 633 MFNNLGEWLCTITGFDS-FSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCII-PVSAHGTNPATAAMC---------- 700 (985)
Q Consensus 633 ~~~e~~~~la~l~G~~~-~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv-~~~~Hg~~~~~a~~~---------- 700 (985)
...+++++++++++.+. ..++.+||++|++.++++++.|...+|..++++||+ ...+||.........
T Consensus 119 ~~~~L~e~la~~~~~~~~~v~~~~sGseA~~~Alk~a~~~~~~~g~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~ 198 (457)
T 3tfu_A 119 PAARLAKLLVDITPAGLDTVFFSDSGSVSVEVAAKMALQYWRGRGLPGKRRLMTWRGGYHGDTFLAMSICDPHGGMHSLW 198 (457)
T ss_dssp HHHHHHHHHHHHSSTTEEEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHTTSCCC-------
T ss_pred HHHHHHHHHHHhCCCCcCEEEEeCcHHHHHHHHHHHHHHHHHhcCCCCCceEEEEcCCcCCccHHhhcccCCcccccccc
Confidence 35588999999997544 346778999999999998888766666434557776 567888665443321
Q ss_pred ---CcEEEEEcCCC--CCCCCHHHHHHHHHhcCCCEEEEEEEc-C-CCcccccc---CHHHHHHHHHHcCCEEEEEcccc
Q 001989 701 ---GMKIVSVGTDA--KGNINIEELRKAAEANRDNLSTLMVTY-P-STHGVYEE---GIDEICKIIHDNGGQVYMDGANM 770 (985)
Q Consensus 701 ---G~~vv~v~~d~--~g~iD~e~L~~~i~~~~~~t~~Vvv~~-p-n~~G~i~~---di~eI~~la~~~galliVD~a~~ 770 (985)
...+..++... .+..|+++|+++|+++.+++++|+++. + |..|++.+ .+++|.++|+++|++||+|+++.
T Consensus 199 ~~~~~~~~~~~~p~~~~~~~d~~~le~~l~~~~~~~aavi~ep~~~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~ 278 (457)
T 3tfu_A 199 TDVLAAQVFAPQVPRDYDPAYSAAFEAQLAQHAGELAAVVVEPVVQGAGGMRFHDPRYLHDLRDICRRYEVLLIFDEIAT 278 (457)
T ss_dssp ---CCCCEEECCCCSSCCHHHHHHHHHHHHHHGGGEEEEEECSSEECTTTCEECCTHHHHHHHHHHHHHTCEEEEECTTT
T ss_pred cCCCCCceEecCCCcccCHHHHHHHHHHHHhCCCCEEEEEEeCCCcCCCCcccCCHHHHHHHHHHHHHcCCEEEEEcCcc
Confidence 11233344322 233589999999986546788888876 5 46787752 29999999999999999999873
Q ss_pred ccccCCCCCCc--------cCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCC---CCccccCCCCCCCCCCCCC
Q 001989 771 NAQVGLTSPGY--------IGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLP---SHPVVSTGGIPAPEKSQPL 839 (985)
Q Consensus 771 ~~~~~l~~pg~--------~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp---~~~~g~~~~~~~~~~~~~~ 839 (985)
++.+.+. ..+|+++++ |.++ +|.+++|++++++++.+.+. ...+
T Consensus 279 ----g~gr~G~~~a~~~~~~~pdiit~s--K~l~----gG~~~lG~v~~~~~i~~~~~~~~~~~~--------------- 333 (457)
T 3tfu_A 279 ----GFGRTGALFAADHAGVSPDIMCVG--KALT----GGYLSLAATLCTADVAHTISAGAAGAL--------------- 333 (457)
T ss_dssp ----TTTTTSSSSTHHHHTCCCSEEEEC--GGGG----TTSSCCEEEEEEHHHHHHHHHSSSCSC---------------
T ss_pred ----CCccccchhHhHhcCCCceEEEEC--hhhh----CCCcceEEEEEcHHHHHHhhccCCCce---------------
Confidence 2322222 236888654 8763 33368899999987765541 1100
Q ss_pred CCCCCcchhhhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhcc--CC-ee-ecCCCCceeeEEEEEecCcccc
Q 001989 840 GTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKH--YP-IL-FRGVNGTVAHEFIVDLRGLKNT 915 (985)
Q Consensus 840 ~~i~s~~~g~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~g--~~-l~-~~~~~~~~~~~~iv~~~~~~~~ 915 (985)
...+++.+++++++++.+.|..+..+++ .++..++.++++++|++. +. +. ..+ .+. + +.+.+.
T Consensus 334 -~~~~t~~~n~~a~aaa~aaL~~~~~~~~---~~~~~~~~~~l~~~L~~l~~~~~v~~vr~-~G~-~--~~i~l~----- 400 (457)
T 3tfu_A 334 -MHGPTFMANPLACAVSVASVELLLGQDW---RTRITELAAGLTAGLDTARALPAVTDVRV-CGA-I--GVIECD----- 400 (457)
T ss_dssp -CCCCTTTTCHHHHHHHHHHHHHHHTSCH---HHHHHHHHHHHHHHHGGGGGSTTEEEEEE-CSS-C--EEEEES-----
T ss_pred -eEecCCCcCHHHHHHHHHHHHHHhhhHH---HHHHHHHHHHHHHHHHHHhcCCCeeeeec-CCe-E--EEEEEC-----
Confidence 0001223355666666777776654443 445667788898888762 22 21 111 122 2 234443
Q ss_pred CCCCHHHHHHHHHHCCCccCCCCCCCCCEEEEeccCCCCHHHHHHHHccCChhHHHHhhc
Q 001989 916 AGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRLK 975 (985)
Q Consensus 916 ~g~~~~~v~~~L~~~Gi~~~~~~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~~ 975 (985)
.+.+..++.++|.++|+.+... .+.+||+|+...|+||||+ ++++|++++++++
T Consensus 401 ~~~~~~~~~~~l~~~Gv~v~~~----~~~lRi~p~~~~t~eei~~--~l~~L~~~l~~~~ 454 (457)
T 3tfu_A 401 RPVDLAVATPAALDRGVWLRPF----RNLVYAMPPYICTPAEITQ--ITSAMVEVARLVG 454 (457)
T ss_dssp SCCCHHHHHHHHHHTTEECCCB----TTEEEECCCTTCCHHHHHH--HHHHHHHHHHHC-
T ss_pred CcccHHHHHHHHHHCCeEEEec----CCEEEEECCCCCCHHHHHH--HHHHHHHHHHHhc
Confidence 1345789999999999988643 4799999999999999999 8899999987654
|
| >1v2d_A Glutamine aminotransferase; PLP, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1v2e_A* 1v2f_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=1.4e-19 Score=206.61 Aligned_cols=292 Identities=11% Similarity=0.027 Sum_probs=196.3
Q ss_pred HHHHHHHHHHhCCCccc-eecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcCC---
Q 001989 635 NNLGEWLCTITGFDSFS-LQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTD--- 710 (985)
Q Consensus 635 ~e~~~~la~l~G~~~~~-~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~d--- 710 (985)
.++++.+++++|.+... ++.++|++|+..++.++. .++++|++++..|..+...++..|++++.+|.+
T Consensus 64 ~~l~~~la~~~~~~~~~v~~~~g~~~a~~~~~~~~~--------~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~ 135 (381)
T 1v2d_A 64 PALREALAEEFAVEPESVVVTSGATEALYVLLQSLV--------GPGDEVVVLEPFFDVYLPDAFLAGAKARLVRLDLTP 135 (381)
T ss_dssp HHHHHHHHHHHTSCGGGEEEESSHHHHHHHHHHHHC--------CTTCEEEEEESCCTTHHHHHHHTTCEEEEEECEEET
T ss_pred HHHHHHHHHhcCCChhhEEEcCChHHHHHHHHHHhC--------CCCCEEEEcCCCchhHHHHHHHcCCEEEEEeCCCCC
Confidence 47888899999987543 555677777755444331 367899998888888877788899999999986
Q ss_pred CCCCCCHHHHHHHHHhcCCCEEEEEEEcCC-Ccccccc--CHHHHHHHHHHcCCEEEEEccccccccCCC--CCC--ccC
Q 001989 711 AKGNINIEELRKAAEANRDNLSTLMVTYPS-THGVYEE--GIDEICKIIHDNGGQVYMDGANMNAQVGLT--SPG--YIG 783 (985)
Q Consensus 711 ~~g~iD~e~L~~~i~~~~~~t~~Vvv~~pn-~~G~i~~--di~eI~~la~~~galliVD~a~~~~~~~l~--~pg--~~g 783 (985)
+++.+|+++|+++++ +++++|++++|+ ++|.+.+ ++++|.++|+++|+++|+|+++.....+-. ... ..+
T Consensus 136 ~~~~~d~~~l~~~l~---~~~~~v~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~g~~~~~~~~~~~~ 212 (381)
T 1v2d_A 136 EGFRLDLSALEKALT---PRTRALLLNTPMNPTGLVFGERELEAIARLARAHDLFLISDEVYDELYYGERPRRLREFAPE 212 (381)
T ss_dssp TEEECCHHHHHTTCC---TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCHHHHCTT
T ss_pred ccCCcCHHHHHHhcC---cCCEEEEECCCCCCCCCccCHHHHHHHHHHHHHcCCEEEEEcCccccccCCCCCCHHHhcCC
Confidence 457899999999986 789999999985 6898852 489999999999999999999852211110 111 347
Q ss_pred CcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHh
Q 001989 784 ADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMM 863 (985)
Q Consensus 784 ~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~l 863 (985)
.|+++.|+||+|+.| |.++|++++++++.+.+..... ..+.+.+ .....++.++|...
T Consensus 213 ~~~~~~s~sK~~~~~----G~r~G~~~~~~~~~~~~~~~~~------------~~~~~~~------~~~~~a~~~~l~~~ 270 (381)
T 1v2d_A 213 RTFTVGSAGKRLEAT----GYRVGWIVGPKEFMPRLAGMRQ------------WTSFSAP------TPLQAGVAEALKLA 270 (381)
T ss_dssp TEEEEEEHHHHTTCG----GGCCEEEECCTTTHHHHHHHHH------------HHTSSCC------HHHHHHHHHHHHHH
T ss_pred CEEEEeechhhcCCc----ccceEEEEeCHHHHHHHHHHHh------------hcccCCC------cHHHHHHHHHHhCc
Confidence 899999999998533 4568999998776554321000 0001111 11222223344432
Q ss_pred c-HHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCC-CCC
Q 001989 864 G-SKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTM-SWP 940 (985)
Q Consensus 864 g-~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~-~~p 940 (985)
. .+++++..++..++++++.+.|++ ++.+. .+.+..+ +.++++ +.+ +.+.|.++||.+... .+.
T Consensus 271 ~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~--~~~~~~~--~~~~~~------~~~---~~~~l~~~gi~v~~g~~~~ 337 (381)
T 1v2d_A 271 RREGFYEALREGYRRRRDLLAGGLRAMGLRVY--VPEGTYF--LMAELP------GWD---AFRLVEEARVALIPASAFY 337 (381)
T ss_dssp HHTTHHHHHHHHHHHHHHHHHHHHHHTTCCEE--CCSBSSE--EEEECT------TCC---HHHHHHHTCEECEEGGGGC
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHCCCEec--CCCcceE--EEEecC------hHh---HHHHHHhCCEEEecchHhC
Confidence 1 345677777888899999999987 55543 2222222 345554 122 677788899987532 121
Q ss_pred ----CCCEEEEeccCCCCHHHHHHHHccCChhHHHHhhcc
Q 001989 941 ----VPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRLKM 976 (985)
Q Consensus 941 ----~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~~~ 976 (985)
..+++||+++. +++||++ +++.|+++++..+.
T Consensus 338 ~~~~~~~~iRi~~~~--~~~~i~~--~~~~l~~~l~~~r~ 373 (381)
T 1v2d_A 338 LEDPPKDLFRFAFCK--TEEELHL--ALERLGRVVNSPRE 373 (381)
T ss_dssp SSSCCTTEEEEECCS--CHHHHHH--HHHHHHHHC-----
T ss_pred CCCCCCCEEEEEeCC--CHHHHHH--HHHHHHHHHhhccc
Confidence 24799999986 8999999 77888888776554
|
| >2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.6e-19 Score=205.84 Aligned_cols=296 Identities=14% Similarity=0.118 Sum_probs=193.0
Q ss_pred hhHHHHHHHHHHHHHHHhCCC---c-cceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcE
Q 001989 628 QGYQEMFNNLGEWLCTITGFD---S-FSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMK 703 (985)
Q Consensus 628 ~G~~~~~~e~~~~la~l~G~~---~-~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~ 703 (985)
+|..++.+++.+++.+.+|.+ . ..++.++|++++..++.++. .++++|+++.+.|..+...++..|++
T Consensus 63 ~~~~~l~~~ia~~~~~~~g~~~~~~~~v~~~~g~~~a~~~~~~~l~--------~~gd~vl~~~p~y~~~~~~~~~~g~~ 134 (376)
T 2dou_A 63 SCTLPFLEEAARWYEGRYGVGLDPRREALALIGSQEGLAHLLLALT--------EPEDLLLLPEVAYPSYFGAARVASLR 134 (376)
T ss_dssp HHHHHHHHHHHHHHHHHHSCCCCTTTSEEEESSHHHHHHHHHHHHC--------CTTCEEEEESSCCHHHHHHHHHTTCE
T ss_pred CCCHHHHHHHHHHHHHHhCCCCCCCccEEEcCCcHHHHHHHHHHhc--------CCCCEEEECCCCcHhHHHHHHHcCCE
Confidence 465555555555555555875 2 23455666666644444331 36789999888776666667789999
Q ss_pred EEEEcCCCCCCCCHHHHHHHHHhcCCCEEEEEEEcCC-Ccccccc--CHHHHHHHHHHcCCEEEEEccccccc-cC-CCC
Q 001989 704 IVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPS-THGVYEE--GIDEICKIIHDNGGQVYMDGANMNAQ-VG-LTS 778 (985)
Q Consensus 704 vv~v~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~pn-~~G~i~~--di~eI~~la~~~galliVD~a~~~~~-~~-l~~ 778 (985)
++.+|++.++.+|+++|+++++ +++++|++++|+ ++|.+.+ ++++|.++|+++|+++++|+++.... .+ ...
T Consensus 135 ~~~~~~~~~~~~d~~~l~~~l~---~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~ 211 (376)
T 2dou_A 135 TFLIPLREDGLADLKAVPEGVW---REAKVLLLNYPNNPTGAVADWGYFEEALGLARKHGLWLIHDNPYVDQVYEGEAPS 211 (376)
T ss_dssp EEEECBCTTSSBCGGGSCHHHH---HHEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTGGGBSSSCCCC
T ss_pred EEEeeCCCCCCCCHHHHHHhhc---cCceEEEECCCCCCcCccCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCC
Confidence 9999984445689999999997 689999999884 6898862 37899999999999999999985321 11 001
Q ss_pred C----CccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHH
Q 001989 779 P----GYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILP 854 (985)
Q Consensus 779 p----g~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~ 854 (985)
+ +..+.++++.|++|+|+. +|.++|++++++++.+.+...... .+.+. +.....
T Consensus 212 ~~~~~~~~~~~i~~~s~sK~~~~----~G~r~G~~~~~~~~~~~l~~~~~~------------~~~~~------~~~~~~ 269 (376)
T 2dou_A 212 PLALPGAKERVVELFSLSKSYNL----AGFRLGFALGSEEALARLERVKGV------------IDFNQ------YAGVLR 269 (376)
T ss_dssp GGGSTTGGGTEEEEEEHHHHHTC----GGGCCEEEEECHHHHHHHHHHHHH------------HCCCS------CHHHHH
T ss_pred hhhcCCCCCcEEEEecchhhcCC----hhheeEEEecCHHHHHHHHHHHHh------------cccCC------CHHHHH
Confidence 1 223567888999999854 356789999887766544211000 00011 112222
Q ss_pred HHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhccCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCcc
Q 001989 855 ISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHG 934 (985)
Q Consensus 855 ~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~ 934 (985)
++.++|.. +.+.+.+..++..++++++.+.|++. +....+.+..+ +.++++ .+.+..++.++|.++||.+
T Consensus 270 a~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~L~~~--~~~~~~~~~~~--~~~~~~-----~~~~~~~~~~~l~~~gi~v 339 (376)
T 2dou_A 270 MGVEALKT-PKEVVRGYARVYRERALGMAEALKGV--LSLLPPRATMY--LWGRLP-----EGVDDLEFGLRLVERGVAL 339 (376)
T ss_dssp HHHHHHTS-CHHHHHHHHHHHHHHHHHHHHHHTTT--SEECCCCBSSE--EEEECC-----TTCCHHHHHHHHHHTTEEC
T ss_pred HHHHHHhC-cHHHHHHHHHHHHHHHHHHHHHHHHh--cCccCCCeeEE--EEEECC-----CCCCHHHHHHHHHHCCEEE
Confidence 23334432 34566677777888899999999764 32222222222 335554 2456788999999999987
Q ss_pred CCC-CCC--CCCEEEEeccCCCCHHHHHHHHccCChhHH
Q 001989 935 PTM-SWP--VPGTLMIEPTESESKSWTGIVMLSSPSEKK 970 (985)
Q Consensus 935 ~~~-~~p--~~~~lris~t~~~t~eeId~~~~~~~l~~~ 970 (985)
... .+. ..+++||+++. +++||++ +++.|+++
T Consensus 340 ~~g~~f~~~~~~~~Ris~~~--~~~~i~~--~l~~l~~~ 374 (376)
T 2dou_A 340 APGRGFGPGGKGFVRIALVR--PLEELLE--AAKRIREA 374 (376)
T ss_dssp EEGGGGCGGGTTEEEEECCS--CHHHHHH--HHHHHHHT
T ss_pred cCchhhCCCCCCeEEEEecC--CHHHHHH--HHHHHHHH
Confidence 532 222 24799999975 7899999 66666554
|
| >3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} SCOP: c.67.1.3 PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=6.6e-19 Score=201.10 Aligned_cols=320 Identities=13% Similarity=0.109 Sum_probs=216.3
Q ss_pred CCCCcHHHHHHHHhCCccccccCCChhhHhhhHHHHHHHHHHHHHHhcCCCCc-ceeeccchHHHHHHHHHHhhhhcCCC
Q 001989 177 NTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMS-NASLLDEGTAAAEAMAMCNNIQKGKK 255 (985)
Q Consensus 177 ~~~~p~~v~~~i~~~~~~~t~~~pyq~e~sqg~l~~i~e~q~~ia~L~g~~~~-~~sl~~~~ta~~ea~~~a~~~~~~~g 255 (985)
|..+|+.+.+++.... .. .+.+. ..+...++++.+++++|.+.. ++.+++|||.++++++.++ . ++|
T Consensus 31 p~~~~~~v~~a~~~~~--~~---~~~~~----~~~~~~~l~~~la~~~~~~~~~~v~~~~gg~~al~~~~~~~-~--~~g 98 (393)
T 3kgw_A 31 PSNLAPRVLAAGSLRM--IG---HMQKE----MLQIMEEIKQGIQYVFQTRNPLTLVVSGSGHCAMETALFNL-L--EPG 98 (393)
T ss_dssp CCCCCHHHHHHTTCCC--CC---TTSHH----HHHHHHHHHHHHHHHHTCCCSEEEEESCCTTTHHHHHHHHH-C--CTT
T ss_pred CCCCCHHHHHHhcccc--cC---cccHH----HHHHHHHHHHHHHHHhCCCCCcEEEEeCCcHHHHHHHHHhc-C--CCC
Confidence 5567888875544321 11 12222 235566788999999999765 4778899998888777655 3 389
Q ss_pred CEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc--------hhhhc-cCC-CEeEEEEEcC-CCCeeeccHHHHHHHHHh
Q 001989 256 KTFIIASNCHPQTIDICITRADGFDIKVVVSDL--------KDIDY-KSG-DVCGVLVQYP-GTEGEVLDYGDFIKNAHA 324 (985)
Q Consensus 256 ~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~--------~~l~~-l~~-~t~~V~v~~p-n~~G~v~di~~I~~~a~~ 324 (985)
|+|+++...|.+.. +...++..|.+++.++. ++|++ +++ ++++|++.+| |.+|.+.|+++|.++|++
T Consensus 99 d~vl~~~~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~ 176 (393)
T 3kgw_A 99 DSFLTGTNGIWGMR--AAEIADRIGARVHQMIKKPGEHYTLQEVEEGLAQHKPVLLFLVHGESSTGVVQPLDGFGELCHR 176 (393)
T ss_dssp CEEEEEESSHHHHH--HHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCTTHHHHHHH
T ss_pred CEEEEEeCCchhHH--HHHHHHHcCCceEEEeCCCCCCCCHHHHHHHHhhCCCcEEEEeccCCcchhhccHHHHHHHHHH
Confidence 99999977664321 12223346888877653 45665 665 8999999988 789999999999999999
Q ss_pred CCcEEEEEecCccccCCC-CCCcccceEEEecC-ccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceee
Q 001989 325 NGVKVVMATDLLALTILK-PPGELGADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRV 402 (985)
Q Consensus 325 ~galliV~a~~~~lg~l~-~~~~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l 402 (985)
+|+++++| +.++.|... ....+|+|+++.+. |+|+ |++|+|++++++++++.+.....++ ..|.+
T Consensus 177 ~~~~li~D-e~~~~g~~~~~~~~~~~d~~~~s~sK~~~-----~~~g~g~~~~~~~~~~~~~~~~~~~-------~~~~~ 243 (393)
T 3kgw_A 177 YQCLLLVD-SVASLGGVPIYMDQQGIDIMYSSSQKVLN-----APPGISLISFNDKAKYKVYSRKTKP-------VSFYT 243 (393)
T ss_dssp TTCEEEEE-CTTTTTTSCCCTTTTTCCEEEEESSSTTC-----CCSSCEEEEECHHHHHHHHTCSSCC-------SCSTT
T ss_pred cCCEEEEE-CCccccCcccchhhcCCCEEEecCccccc-----CCCceeEEEECHHHHHHHhccCCCC-------Cceee
Confidence 99999995 345555332 34678999999998 7674 3456899999998877663221111 11222
Q ss_pred ecccc------cccccccccCCCccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCC---C
Q 001989 403 AMQTR------EQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGL---P 473 (985)
Q Consensus 403 ~l~tr------e~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~---~ 473 (985)
++... .+..+...+|.|+ ....++.+++ .++..+|++++.++..++.+++.+.|+++| +++... .
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~a~~~al--~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~~~ 317 (393)
T 3kgw_A 244 DITYLAKLWGCEGETRVIHHTTPV---TSLYCLRESL--ALIAEQGLENCWRRHREATAHLHKHLQEMG-LKFFVKDPEI 317 (393)
T ss_dssp CHHHHHHHTTCSSSCCCCCCCCCH---HHHHHHHHHH--HHHHHHCHHHHHHHHHHHHHHHHHHHHHTT-CCBSSSSGGG
T ss_pred cHHHHHHhhhhccccCCCCCCCCH---HHHHHHHHHH--HHHHHhhHHHHHHHHHHHHHHHHHHHHHcC-CeeccCChhh
Confidence 11100 0111233445554 3344444443 455567899999999999999999999996 877531 1
Q ss_pred Cc-ceEEEecC-C--HHHHHHHHHHc-Cceeeee----cCCeEEEEe-ccCCCHHHHHHHHHHHhC
Q 001989 474 FF-DTVKVKCA-D--AHAIASAAYKI-EMNLRVV----DSNTVTASF-DETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 474 ~~-~~~~~~~~-~--~~~v~~~L~~~-GI~~~~~----~~~~lris~-t~~~t~edId~li~aL~~ 529 (985)
.. ..+.+..+ + ..++.++|.++ ||.+... .++.+|+++ ...+|++|+++++++|.+
T Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRi~~~~~~~~~~~i~~~~~~l~~ 383 (393)
T 3kgw_A 318 RLPTITTVTVPAGYNWRDIVSYVLDHFSIEISGGLGPTEERVLRIGLLGYNATTENVDRVAEALRE 383 (393)
T ss_dssp BCSSEEEEECCTTBCHHHHHHHHHHHHCEECBCCCGGGTTTEEEEECCGGGCCHHHHHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCCHHHHHHHHHHhCCEEEeCCcccCCCCEEEEEecccCCCHHHHHHHHHHHHH
Confidence 12 22345654 2 78999999887 9988642 357899998 555699999999999974
|
| >3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.3e-19 Score=208.59 Aligned_cols=303 Identities=12% Similarity=0.099 Sum_probs=203.5
Q ss_pred hhHHHHHHHHHHHHHHHhCCC----ccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcE
Q 001989 628 QGYQEMFNNLGEWLCTITGFD----SFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMK 703 (985)
Q Consensus 628 ~G~~~~~~e~~~~la~l~G~~----~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~ 703 (985)
.|..++.+++++++++++|.+ ...++.++|++++..++.++ ..++++|+++.+.|..+...++..|++
T Consensus 78 ~g~~~l~~~l~~~l~~~~g~~~~~~~~i~~~~g~~~a~~~~~~~l--------~~~gd~vl~~~~~~~~~~~~~~~~g~~ 149 (407)
T 3nra_A 78 RGDLGIRDLLAPRLAAFTGAPVDARDGLIITPGTQGALFLAVAAT--------VARGDKVAIVQPDYFANRKLVEFFEGE 149 (407)
T ss_dssp TCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHHHHHHHTT--------CCTTCEEEEEESCCTHHHHHHHHTTCE
T ss_pred CCCHHHHHHHHHHHHHHhCCCCCCCCcEEEeCCcHHHHHHHHHHh--------CCCCCEEEEcCCcccchHHHHHHcCCE
Confidence 466678888999999999984 22355566666664443322 146789999988888777778899999
Q ss_pred EEEEcC------CCCCCCCHHHHHHHHHhcCCCEEEEEEEcCC-CccccccC---HHHHHHHHHHcCCEEEEEccccccc
Q 001989 704 IVSVGT------DAKGNINIEELRKAAEANRDNLSTLMVTYPS-THGVYEEG---IDEICKIIHDNGGQVYMDGANMNAQ 773 (985)
Q Consensus 704 vv~v~~------d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~pn-~~G~i~~d---i~eI~~la~~~galliVD~a~~~~~ 773 (985)
++.+|+ +.++.+|+++|+++++ +++++|++++|+ ++|.+. + +++|+++|+++|+++++|++|....
T Consensus 150 ~~~~~~~~~~~~~~~~~~d~~~l~~~l~---~~~~~v~~~~p~nptG~~~-~~~~l~~i~~~~~~~~~~li~Dea~~~~~ 225 (407)
T 3nra_A 150 MVPVQLDYVSADETRAGLDLTGLEEAFK---AGARVFLFSNPNNPAGVVY-SAEEIGQIAALAARYGATVIADQLYSRLR 225 (407)
T ss_dssp EEEEEBCCCSSCCSSCCBCHHHHHHHHH---TTCCEEEEESSCTTTCCCC-CHHHHHHHHHHHHHHTCEEEEECTTTTSB
T ss_pred EEEeecccccccCcCCCcCHHHHHHHHh---hCCcEEEEcCCCCCCCccc-CHHHHHHHHHHHHHcCCEEEEEccccccc
Confidence 999998 3568899999999998 688899999995 699987 6 9999999999999999999985311
Q ss_pred -cC--CCCC-----CccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCc
Q 001989 774 -VG--LTSP-----GYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAA 845 (985)
Q Consensus 774 -~~--l~~p-----g~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~ 845 (985)
++ .... ...+.++++.|++|+|+. .|.++|++++++++.+.+...... . ..+.+
T Consensus 226 ~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~g~----~G~r~G~~~~~~~~~~~l~~~~~~------------~--~~~~~ 287 (407)
T 3nra_A 226 YAGASYTHLRAEAAVDAENVVTIMGPSKTESL----SGYRLGVAFGSRAIIARMEKLQAI------------V--SLRAA 287 (407)
T ss_dssp CTTCCCCCGGGCTTSCGGGEEEEECSSSTTCC----GGGCCEEEEECHHHHHHHHHHHHH------------H--TSSSC
T ss_pred cCCCCCCChhhcCcccCCcEEEEeCcccccCC----CeeeEEEEEcCHHHHHHHHHHHhh------------h--ccCCC
Confidence 11 1010 124456889999999854 356789999887766544211000 0 01111
Q ss_pred chhhhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhccCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHH
Q 001989 846 PWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAK 925 (985)
Q Consensus 846 ~~g~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~ 925 (985)
..++ .++.+++. .+.+.+.+..++..++++++.+.|++...+....+.+..+ +.+.++. .+.+..++.+
T Consensus 288 ~~~~----~a~~~~l~-~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~--~~~~~~~----~~~~~~~~~~ 356 (407)
T 3nra_A 288 GYSQ----AVLRGWFD-EAPGWMEDRIARHQAIRDELLHVLRGCEGVFARTPQAGSY--LFPRLPK----LAVAPAEFVK 356 (407)
T ss_dssp HHHH----GGGGGTTC-CCTTHHHHHHHHHHHHHHHHHHHHHTSTTCBCCCCSBSSE--ECCBCCC----BSSCHHHHHH
T ss_pred hHHH----HHHHHHHh-ccchHHHHHHHHHHHHHHHHHHHHhcCCCceeccCCeeEE--EEEeCCC----CCCCHHHHHH
Confidence 1111 11112222 1224456666777888899999998632222212222222 2344431 1457889999
Q ss_pred HHHH-CCCccCCCC-C--CCCCEEEEeccCCCCHHHHHHHHccCChhHHHHhhc
Q 001989 926 RLMD-YGFHGPTMS-W--PVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRLK 975 (985)
Q Consensus 926 ~L~~-~Gi~~~~~~-~--p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~~ 975 (985)
+|.+ +||.+.... + ...+.+||+++. +++||++ +++.|++++++++
T Consensus 357 ~l~~~~gi~v~~g~~~~~~~~~~iRis~~~--~~~~i~~--~~~~l~~~~~~~~ 406 (407)
T 3nra_A 357 ILRLQAGVVVTPGTEFSPHTADSVRLNFSQ--DHEAAVA--AARRIVTLVERYR 406 (407)
T ss_dssp HHHHHHCEECEEGGGTCTTCTTBEEEECCS--CHHHHHH--HHHHHHHHHHHHB
T ss_pred HHHHhCCEEEeCchhhCCCCCCEEEEEeCC--CHHHHHH--HHHHHHHHHHHhh
Confidence 9976 599875322 1 135899999984 9999999 8899999888765
|
| >1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA synthase, biotin biosynthesis, 8-AMIN oxonanoate synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB: 2g6w_A* 1dje_A* 1dj9_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=1.1e-19 Score=207.61 Aligned_cols=288 Identities=12% Similarity=0.080 Sum_probs=195.0
Q ss_pred HHHHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcCCC
Q 001989 632 EMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDA 711 (985)
Q Consensus 632 ~~~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~d~ 711 (985)
+...++++.+++++|.+ ..++.++|++++..++.+ + ..++++|+++...|+.+...++..|.+++.+|.
T Consensus 84 ~~~~~l~~~la~~~g~~-~~i~~~sGt~a~~~~~~~---~-----~~~gd~v~~~~~~~~~~~~~~~~~g~~~~~~~~-- 152 (384)
T 1bs0_A 84 VVHQALEEELAEWLGYS-RALLFISGFAANQAVIAA---M-----MAKEDRIAADRLSHASLLEAASLSPSQLRRFAH-- 152 (384)
T ss_dssp HHHHHHHHHHHHHHTCS-EEEEESCHHHHHHHHHHH---H-----CCTTCEEEEETTCCHHHHHHHHTSSSEEEEECT--
T ss_pred HHHHHHHHHHHHHhCCC-cEEEeCCcHHHHHHHHHH---h-----CCCCcEEEEcccccHHHHHHHHHcCCCEEEeCC--
Confidence 34568899999999987 456677888776544433 2 146789999999898877778889999999985
Q ss_pred CCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccC---CCCCCc--cCCc
Q 001989 712 KGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVG---LTSPGY--IGAD 785 (985)
Q Consensus 712 ~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~---l~~pg~--~g~D 785 (985)
+|+++|++++++.++++++|++++| |++|.+. |+++|.++|+++|+++++|++|..+..+ ...+.. .++|
T Consensus 153 ---~d~~~l~~~l~~~~~~~~~v~~~~~~nptG~~~-~l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~d 228 (384)
T 1bs0_A 153 ---NDVTHLARLLASPCPGQQMVVTEGVFSMDGDSA-PLAEIQQVTQQHNGWLMVDDAHGTGVIGEQGRGSCWLQKVKPE 228 (384)
T ss_dssp ---TCHHHHHHHHHSCCSSCEEEEEESBCTTTCCBC-CHHHHHHHHHHTTCEEEEECTTTTTTSSGGGCCHHHHTTCCCS
T ss_pred ---CCHHHHHHHHHhcCCCCeEEEEeCCCCCCCCcc-CHHHHHHHHHHcCcEEEEECCcccceecCCCCchHHhcCCCCc
Confidence 4899999999843334788888888 5799998 8999999999999999999998543211 000111 3589
Q ss_pred EEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcH
Q 001989 786 VCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGS 865 (985)
Q Consensus 786 i~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~ 865 (985)
+++.|+||+|+ .+| |++++++++.+.+....... .. +... +...+.++.+.+..+..
T Consensus 229 i~~~s~sK~~~------~~G-G~~~~~~~~~~~l~~~~~~~-----------~~-~~~~----~~~~~~~~~~al~~~~~ 285 (384)
T 1bs0_A 229 LLVVTFGKGFG------VSG-AAVLCSSTVADYLLQFARHL-----------IY-STSM----PPAQAQALRASLAVIRS 285 (384)
T ss_dssp EEEEESSSTTS------SCC-EEEEECHHHHHHHHHHCHHH-----------HS-SBCC----CHHHHHHHHHHHHHHHS
T ss_pred EEEeeccchhh------ccC-cEEEeCHHHHHHHHHhchhh-----------hc-CCCC----CHHHHHHHHHHHHHHhc
Confidence 99999999984 234 89998877654432100000 00 0011 12223333444554432
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCCCC----
Q 001989 866 KGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWP---- 940 (985)
Q Consensus 866 eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~~p---- 940 (985)
..+.+..++..++++++.+.|++ ++++. ++.+.++ .+.++ .+.+..++.++|.++||.+....++
T Consensus 286 ~~~~~~~~~~~~~~~~l~~~L~~~g~~~~--~~~~~~~---~~~~~-----~~~~~~~l~~~l~~~gi~v~~~~~~~~~~ 355 (384)
T 1bs0_A 286 DEGDARREKLAALITRFRAGVQDLPFTLA--DSCSAIQ---PLIVG-----DNSRALQLAEKLRQQGCWVTAIRPPTVPA 355 (384)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSSCEEC--SCCSSBC---CEEEE-----SHHHHHHHHHHHHHTTEECCEECTTSSCT
T ss_pred cccHHHHHHHHHHHHHHHHHHHhcCCccc--CCCCCEE---EEEeC-----CHHHHHHHHHHHHHCCcEEEeecCCCCCC
Confidence 13456667788899999999987 44432 2222222 23443 1235678999999999987653322
Q ss_pred CCCEEEEeccCCCCHHHHHHHHccCChhH
Q 001989 941 VPGTLMIEPTESESKSWTGIVMLSSPSEK 969 (985)
Q Consensus 941 ~~~~lris~t~~~t~eeId~~~~~~~l~~ 969 (985)
..+.+||+++..+|++|+++ +++.|++
T Consensus 356 ~~~~~Ri~~~~~~~~~~i~~--~~~~l~~ 382 (384)
T 1bs0_A 356 GTARLRLTLTAAHEMQDIDR--LLEVLHG 382 (384)
T ss_dssp TCEEECCBCCTTCCHHHHHH--HHHHHHH
T ss_pred CCceEEEEEcCCCCHHHHHH--HHHHHHh
Confidence 13689999999999999999 6666654
|
| >2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate decarboxylase; structural genomics, APC91511.1, glutamate decarboxylase; HET: MSE; 1.81A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.82 E-value=4.3e-18 Score=201.91 Aligned_cols=359 Identities=13% Similarity=0.092 Sum_probs=226.3
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhcCCC---ccceecCCCCCCCCCcHHHHHHHHhCCccccccCCChhhHhhhHHHHHHHH
Q 001989 140 KFSKFDEGLTESQMIEHMQKLASMNK---VYKSFIGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNF 216 (985)
Q Consensus 140 ~lp~~~~~~se~e~~~~~~~l~~~n~---~~~~~lG~g~y~~~~p~~v~~~i~~~~~~~t~~~pyq~e~sqg~l~~i~e~ 216 (985)
.+| .++.+-.++++++.+....+. ....|+|....+...|+++. .++.. ...........+.+..+...+.
T Consensus 72 ~~p--~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~v~~-~~~~~---~~n~~~~~~~~~~~~~~le~~~ 145 (497)
T 2qma_A 72 DLD--NKNAPLKSVIDDVAELVAKNAIFTQHPDCIAHLHTPPLMPAVAA-EAMIA---ALNQSMDSWDQASSATYVEQKV 145 (497)
T ss_dssp CSS--SCCCCHHHHHHHHHHHTTTTSCCTTSTTBCSSSCCCCBHHHHHH-HHHHH---HHCCCTTCGGGCHHHHHHHHHH
T ss_pred CCC--CCCCCHHHHHHHHHHHHhcCCCCCCCCCeeEeCCCCCcHHHHHH-HHHHH---hhcccccchhhChHHHHHHHHH
Confidence 456 467888999999987544332 12346666655544455443 44321 1111111223344555666667
Q ss_pred HHHHHHhcCCCC-cceeeccchHHHHHHHHHHhhh--h----------cC-C---CC-EEEEcCCCChhHHHHHHHhhcC
Q 001989 217 QTMIADLTGLPM-SNASLLDEGTAAAEAMAMCNNI--Q----------KG-K---KK-TFIIASNCHPQTIDICITRADG 278 (985)
Q Consensus 217 q~~ia~L~g~~~-~~~sl~~~~ta~~ea~~~a~~~--~----------~~-~---g~-~Vlv~~~~H~s~~~~~~~~a~~ 278 (985)
++++++++|.+. ..+.+++|||.++..++.+.+. . .+ + ++ +|+++...|+++...++.+ +
T Consensus 146 ~~~la~~~g~~~~~~~~~t~ggt~a~~~al~~ar~~~~~~~~~~~~~~~G~~~~~g~~~v~~s~~~h~s~~~~~~~~--g 223 (497)
T 2qma_A 146 VNWLCDKYDLSEKADGIFTSGGTQSNQMGLMLARDWIADKLSGHSIQKLGLPDYADKLRIVCSKKSHFTVQKSASWM--G 223 (497)
T ss_dssp HHHHHHHTTCCTTCEEEEESSHHHHHHHHHHHHHHHHHHHHHCCCHHHHCSCGGGGGEEEEEETTSCTHHHHHHHHT--T
T ss_pred HHHHHHHhCCCCCCCeEEcCCchHHHHHHHHHHHHHHHHhhcccchhhcccccccCCeEEEECCCchHHHHHHHHHc--C
Confidence 899999999975 6788999999887776655321 0 11 0 45 8999999999999988653 2
Q ss_pred CCe-EEEEeCc--------hhhhc-cCCC------EeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCC
Q 001989 279 FDI-KVVVSDL--------KDIDY-KSGD------VCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTIL 341 (985)
Q Consensus 279 ~gi-~v~~v~~--------~~l~~-l~~~------t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l 341 (985)
.|. +++.++. ++|++ ++++ +.+|+++++ |.+|.++|+++|+++|+++|++++||+ .++.+..
T Consensus 224 ~g~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~vv~~~~~~~tG~~~~l~~I~~l~~~~~~~l~vD~-a~~~~~~ 302 (497)
T 2qma_A 224 LGEKAVMTVDANADGTMDITKLDEVIAQAKAEGLIPFAIVGTAGTTDHGAIDDLDFIADMAVKHDMWMHVDG-AYGGALI 302 (497)
T ss_dssp SCGGGEEEECBCTTSSBCGGGHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHHTCEEEEEE-TTGGGGG
T ss_pred CCcccEEEEecCCCCcCCHHHHHHHHHHHHHCCCcceEEEEcCCCCCCCCCCCHHHHHHHHHHcCCEEEEeh-hhhHHHH
Confidence 344 5666654 45655 5432 447888876 679999999999999999999999954 2333322
Q ss_pred CCC-----Ccc-cceEEEecC-ccccccCCCCCCcEEEEEEchhh-HhcCCC--ceeeeeecCCCCcceeeecccccccc
Q 001989 342 KPP-----GEL-GADIVVGSA-QRFGVPMGYGGPHAAFLATSQEY-KRMMPG--RIVGVSIDSSGKPALRVAMQTREQHI 411 (985)
Q Consensus 342 ~~~-----~~~-GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~-~~~lp~--~~vG~t~d~~g~~~~~l~l~tre~~i 411 (985)
..+ ..+ ++|+++.++ |++++|. ++|+++++++. ++.+.. ..+.. .. .....+ +..+ -+--
T Consensus 303 ~~~~~~~~~gi~~~D~i~~s~hK~l~~p~-----~~G~l~~~~~~~~~~~~~~~~yl~~-~~-~~~~~~-~~~~--~~~~ 372 (497)
T 2qma_A 303 LSSHKSRLKGVERAHSISVDFHKLFYQTI-----SCGALLVNDKSNFKFLLHHADYLNR-EH-DELPNL-VDKS--IATT 372 (497)
T ss_dssp GSTTGGGGTTGGGCSEEEEETTTTTCCCS-----SCEEEEESCGGGGGGGCC-------------------------CCS
T ss_pred hCcchHhhcCcccCCEEEEcchhccCCCc-----ceEEEEEeCHHHHHHhcCCchhcCC-cc-ccCCCc-cccC--CCCC
Confidence 111 123 789999998 7676553 46888887643 333311 00000 00 000000 0000 0011
Q ss_pred cccccCCCccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCCCcceEEEecCC-------
Q 001989 412 RRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDTVKVKCAD------- 484 (985)
Q Consensus 412 rre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~------- 484 (985)
||. .++ ++.++ +..+|.+|++++.++..++++++++.|+++.+++++.++..+.+.|+...
T Consensus 373 r~~---------~al-~~~~~--l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~ 440 (497)
T 2qma_A 373 KRF---------DAL-KVFMT--MQNVGPKALGDMYDHLLAQTLEVADMIRTNDQFELLAEPSLSTVLFRATHETADLDE 440 (497)
T ss_dssp CCC---------THH-HHHHH--HHHTCHHHHHHHHHHHHHHHHHHHHHHHTCTTEEECSCCSSSEEEEEECCSSSCHHH
T ss_pred Cch---------hHH-HHHHH--HHHhCHHHHHHHHHHHHHHHHHHHHHHhhCCCeEEEcCCCceEEEEEEcCCccCHHH
Confidence 111 111 22223 36789999999999999999999999999844998765555666666532
Q ss_pred -HHHHHHHHHHcCceeee---ec-CCeEEEEe-ccCCCHHHHHHHHHHHhC
Q 001989 485 -AHAIASAAYKIEMNLRV---VD-SNTVTASF-DETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 485 -~~~v~~~L~~~GI~~~~---~~-~~~lris~-t~~~t~edId~li~aL~~ 529 (985)
..++.+.|.++|+.+.. .. .+.+|+++ +.++|++|||+++++|.+
T Consensus 441 l~~~l~~~l~~~G~~~~~~~~~~g~~~lRis~~~~~~t~edi~~~~~~l~~ 491 (497)
T 2qma_A 441 LNKALRLEALTRGIAVLGETIVDGKTALKFTILNPCLTTSDFESLLSKINM 491 (497)
T ss_dssp HHHHHHHHHHHHTSCBCEEEEETTEEEEEEECCCTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCEEEEeeEECCEEEEEEEecCCCCCHHHHHHHHHHHHH
Confidence 24677888888987632 12 25799998 889999999999999874
|
| >3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.7e-19 Score=207.22 Aligned_cols=297 Identities=13% Similarity=0.144 Sum_probs=203.1
Q ss_pred hhHHHHHHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEE
Q 001989 628 QGYQEMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSV 707 (985)
Q Consensus 628 ~G~~~~~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v 707 (985)
.|..+..+++++++++++|.+. .++.++|++|+..++.++. .++++|+++.+.|+.+...++..|++++.+
T Consensus 84 ~g~~~~~~~l~~~la~~~g~~~-v~~~~ggt~a~~~~~~~~~--------~~gd~V~~~~p~~~~~~~~~~~~g~~~~~v 154 (398)
T 3a2b_A 84 NGTLDIHVELEEKLSAYVGKEA-AILFSTGFQSNLGPLSCLM--------GRNDYILLDERDHASIIDGSRLSFSKVIKY 154 (398)
T ss_dssp TCCCHHHHHHHHHHHHHHTCSE-EEEESSHHHHHHHHHHHSS--------CTTCEEEEETTCCHHHHHHHHHSSSEEEEE
T ss_pred cCCcHHHHHHHHHHHHHhCCCc-EEEECCHHHHHHHHHHHHh--------CCCCEEEECCccCHHHHHHHHHcCCceEEe
Confidence 4555677889999999999864 4556777777654444331 467899999999988888888999999999
Q ss_pred cCCCCCCCCHHHHHHHHHhcCC-CEEEEEEEcCC-CccccccCHHHHHHHHHHcCCEEEEEccccccccCC-C-CC-Ccc
Q 001989 708 GTDAKGNINIEELRKAAEANRD-NLSTLMVTYPS-THGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGL-T-SP-GYI 782 (985)
Q Consensus 708 ~~d~~g~iD~e~L~~~i~~~~~-~t~~Vvv~~pn-~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l-~-~p-g~~ 782 (985)
|. +|+++|++++++.++ ++++|++++|+ ++|.+. |+++|.++|+++|+++++|+++..+..+. . .. ..+
T Consensus 155 ~~-----~d~~~l~~~l~~~~~~~~~~v~~~~~~nptG~~~-~~~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~ 228 (398)
T 3a2b_A 155 GH-----NNMEDLRAKLSRLPEDSAKLICTDGIFSMEGDIV-NLPELTSIANEFDAAVMVDDAHSLGVIGHKGAGTASHF 228 (398)
T ss_dssp CT-----TCHHHHHHHHHTSCSSSCEEEEEESBCTTTCCBC-CHHHHHHHHHHHTCEEEEECTTTTTTSSGGGCCHHHHH
T ss_pred CC-----CCHHHHHHHHHhhccCCceEEEEeCCCCCCCCcc-CHHHHHHHHHHcCcEEEEECCCcccccCCCCCchHhhc
Confidence 86 589999999984322 78999999984 699998 89999999999999999999985332110 0 11 111
Q ss_pred ----CCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHH
Q 001989 783 ----GADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYT 858 (985)
Q Consensus 783 ----g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a 858 (985)
++|+++.|+||+|+ .+| |++++++++.+.+....... ...... ....++++.+
T Consensus 229 ~~~~~~di~~~s~sK~~~------~~G-G~~~~~~~~~~~l~~~~~~~-----------~~~~~~-----~~~~~a~~~~ 285 (398)
T 3a2b_A 229 GLNDDVDLIMGTFSKSLA------SLG-GFVAGDADVIDFLKHNARSV-----------MFSASM-----TPASVASTLK 285 (398)
T ss_dssp TCGGGCSEEEEESSSTTC------SSC-EEEEECHHHHHHHHHHCHHH-----------HSSBCC-----CHHHHHHHHH
T ss_pred CCCcCCeEEEeccccccc------CCC-cEEEeCHHHHHHHHHhcccc-----------eecCCC-----CHHHHHHHHH
Confidence 36999999999984 234 89999877654432100000 000111 1111222234
Q ss_pred HHHHhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCC
Q 001989 859 YIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTM 937 (985)
Q Consensus 859 ~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~ 937 (985)
.|..+ +.+.+..++..++++++.+.|++ ++.+. .+.+. .+.+.++ .+.+..++.++|.++||.+...
T Consensus 286 ~l~~~--~~~~~~~~~~~~~~~~l~~~L~~~g~~~~--~~~g~---~~~~~~~-----~~~~~~~l~~~l~~~gi~v~~~ 353 (398)
T 3a2b_A 286 ALEII--QNEPEHIEKLWKNTDYAKAQLLDHGFDLG--ATESP---ILPIFIR-----SNEKTFWVTKMLQDDGVFVNPV 353 (398)
T ss_dssp HHHHH--HHCTHHHHHHHHHHHHHHHHHHHTTCCBC--SCCSS---EEEEECC-----CHHHHHHHHHHHHHTTEECEEE
T ss_pred HHHHH--hhCHHHHHHHHHHHHHHHHHHHhcCCCcC--CCCCC---EEEEEcC-----CHHHHHHHHHHHHHCCcEEEee
Confidence 44443 22445666778888999999987 44442 22222 2345543 1235678999999999987543
Q ss_pred CCC----CCCEEEEeccCCCCHHHHHHHHccCChhHHHHhhcc
Q 001989 938 SWP----VPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRLKM 976 (985)
Q Consensus 938 ~~p----~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~~~ 976 (985)
..+ ..+++||+++..++++|+++ +++.|+++++++..
T Consensus 354 ~~~~~~~~~~~iRis~~~~~~~e~i~~--~~~~l~~~l~~~~~ 394 (398)
T 3a2b_A 354 VSPAVPAEESLIRFSLMATHTYDQIDE--AIEKMVKVFKQAEV 394 (398)
T ss_dssp CTTTSCGGGCEEEEECCTTCCHHHHHH--HHHHHHHHHHHCC-
T ss_pred CCCCCCCCCceEEEEEeCCCCHHHHHH--HHHHHHHHHHHhCc
Confidence 221 24789999999999999999 88999998877643
|
| >2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme biosynthesis, pyridoxal PHOS dependent, transferase, acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus} SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=5.1e-19 Score=203.42 Aligned_cols=293 Identities=16% Similarity=0.161 Sum_probs=199.5
Q ss_pred HHHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcCCCC
Q 001989 633 MFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAK 712 (985)
Q Consensus 633 ~~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~d~~ 712 (985)
...++++.+++++|.+. .+..++|++++++++.++... .++++|+++...|+++...++..|++++.+|.+
T Consensus 92 ~~~~l~~~la~~~~~~~-~i~~~sG~~a~~~~~~~l~~~------~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~-- 162 (401)
T 2bwn_A 92 YHRRLEAEIAGLHQKEA-ALVFSSAYNANDATLSTLRVL------FPGLIIYSDSLNHASMIEGIKRNAGPKRIFRHN-- 162 (401)
T ss_dssp HHHHHHHHHHHHTTCSE-EEEESCHHHHHHHHHHHHHHH------STTCEEEEETTCCHHHHHHHHHSCCCEEEECTT--
T ss_pred HHHHHHHHHHHHhCCCc-EEEECCcHHHHHHHHHHHhcC------CCCCEEEECchhhHHHHHHHHHcCCeEEEEcCC--
Confidence 45688899999999753 455578887665554443211 257899999988888777788899999999975
Q ss_pred CCCCHHHHHHHHHhcC-CCEEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCC-CC--CCcc----C
Q 001989 713 GNINIEELRKAAEANR-DNLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGL-TS--PGYI----G 783 (985)
Q Consensus 713 g~iD~e~L~~~i~~~~-~~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l-~~--pg~~----g 783 (985)
|+++|++++++.+ +++++|++++| |++|.+. |+++|.++|+++|+++++|++|..+..+. .. .... .
T Consensus 163 ---d~~~le~~l~~~~~~~~~~v~~~~~~nptG~~~-~l~~i~~l~~~~~~~li~Dea~~~g~~~~~g~~~~~~~~~~~~ 238 (401)
T 2bwn_A 163 ---DVAHLRELIAADDPAAPKLIAFESVYSMDGDFG-PIKEICDIAEEFGALTYIDEVHAVGMYGPRGAGVAERDGLMHR 238 (401)
T ss_dssp ---CHHHHHHHHHHSCTTSCEEEEEESBCTTTCCBC-CHHHHHHHHHHHTCEEEEECTTTTTTSSTTSCCHHHHHTCGGG
T ss_pred ---CHHHHHHHHHhhccCCceEEEEecCcCCCCCcC-CHHHHHHHHHHcCCEEEEeccccccccCCCCceeeeccCcccc
Confidence 8999999997544 47899999998 5799998 89999999999999999999986332110 00 0011 3
Q ss_pred CcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHh
Q 001989 784 ADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMM 863 (985)
Q Consensus 784 ~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~l 863 (985)
.|+++.+++|+|+. || |+++.++++.+.+.....+. ..... + +...++++.+.+..+
T Consensus 239 ~~i~~~s~sK~~~~------~G-G~~~~~~~~~~~l~~~~~~~----------~~~~~--~----~~~~~~a~~~al~~~ 295 (401)
T 2bwn_A 239 IDIFNGTLAKAYGV------FG-GYIAASARMVDAVRSYAPGF----------IFSTS--L----PPAIAAGAQASIAFL 295 (401)
T ss_dssp CSEEEEESSSTTCS------CC-EEEEECHHHHHHHHHHCHHH----------HTSBC--C----CHHHHHHHHHHHHHH
T ss_pred CcEEEeechhhccC------CC-CEEecCHHHHHHHHHhCcCc----------eecCC--C----CHHHHHHHHHHHHHH
Confidence 58999999999853 44 78888766554331100000 00001 1 112233344556666
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHH-HCCCccCCCCCC-
Q 001989 864 GSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLM-DYGFHGPTMSWP- 940 (985)
Q Consensus 864 g~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~-~~Gi~~~~~~~p- 940 (985)
...|+.+..++..++++++.+.|++ ++.+. ++.+. .+.+.++ .+.+..++.++|. ++||.+....++
T Consensus 296 ~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~--~~~~~---~~~~~~~-----~~~~~~~~~~~L~~~~gi~v~~~~~~~ 365 (401)
T 2bwn_A 296 KTAEGQKLRDAQQMHAKVLKMRLKALGMPII--DHGSH---IVPVVIG-----DPVHTKAVSDMLLSDYGVYVQPINFPT 365 (401)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHHTCCBC--CCSSS---CEEEECC-----CHHHHHHHHHHHHHHHCEECCEECTTT
T ss_pred HhcccHHHHHHHHHHHHHHHHHHHHCCCccc--CCCCC---eEEEEeC-----ChHHHHHHHHHHHhcCCEEEeecCCCC
Confidence 5556777778888999999999987 45442 22222 2445543 1234678999996 789998643322
Q ss_pred C---CCEEEEeccCCCCHHHHHHHHccCChhHHHHh
Q 001989 941 V---PGTLMIEPTESESKSWTGIVMLSSPSEKKLHR 973 (985)
Q Consensus 941 ~---~~~lris~t~~~t~eeId~~~~~~~l~~~~~~ 973 (985)
. .+.+|++++.++|++||++ +++.|++++++
T Consensus 366 ~~~~~~~iRis~~~~~t~~~i~~--~~~~l~~~~~~ 399 (401)
T 2bwn_A 366 VPRGTERLRFTPSPVHDLKQIDG--LVHAMDLLWAR 399 (401)
T ss_dssp SCTTCCEEEECCCTTSCHHHHHH--HHHHHHHHC--
T ss_pred CCCCCceEEEEeeCCCCHHHHHH--HHHHHHHHHHh
Confidence 2 2589999999999999999 77888877654
|
| >2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=1.9e-18 Score=197.96 Aligned_cols=323 Identities=11% Similarity=0.067 Sum_probs=214.4
Q ss_pred CCCCcHHHHHHHHhCCccccccCCChhhHhhhHHHHHHHHHHHHHHhcCCCCc-ceeeccchHHHHHHHHHHhhhhcCCC
Q 001989 177 NTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMS-NASLLDEGTAAAEAMAMCNNIQKGKK 255 (985)
Q Consensus 177 ~~~~p~~v~~~i~~~~~~~t~~~pyq~e~sqg~l~~i~e~q~~ia~L~g~~~~-~~sl~~~~ta~~ea~~~a~~~~~~~g 255 (985)
|..+|+.+.+++.+. +...|+|+ ....+.++++.+|+++|.+.. ++.+++|+|.++++++.++ . ++|
T Consensus 26 p~~~~~~v~~a~~~~--~~~~~~~~-------~~~~~~~l~~~la~~~~~~~~~~v~~~~g~t~al~~~~~~~-~--~~g 93 (396)
T 2ch1_A 26 PSNCSKRVLTAMTNT--VLSNFHAE-------LFRTMDEVKDGLRYIFQTENRATMCVSGSAHAGMEAMLSNL-L--EEG 93 (396)
T ss_dssp SCCCCHHHHHHTTSC--CCCTTCHH-------HHHHHHHHHHHHHHHHTCCCSCEEEESSCHHHHHHHHHHHH-C--CTT
T ss_pred CCCCCHHHHHHhccc--cccCCChh-------HHHHHHHHHHHHHHHhCCCCCcEEEECCcHHHHHHHHHHHh-c--CCC
Confidence 445777776554332 11123221 124467889999999999887 7889999998888777665 2 378
Q ss_pred CEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc--------hhhhc-cCC-CEeEEEEEcC-CCCeeeccHHHHHHHHHh
Q 001989 256 KTFIIASNCHPQTIDICITRADGFDIKVVVSDL--------KDIDY-KSG-DVCGVLVQYP-GTEGEVLDYGDFIKNAHA 324 (985)
Q Consensus 256 ~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~--------~~l~~-l~~-~t~~V~v~~p-n~~G~v~di~~I~~~a~~ 324 (985)
|+|++++..|+++. +...++..|++++.++. +++++ +++ ++++|++++| |++|.+.|+++|.++|++
T Consensus 94 d~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~ 171 (396)
T 2ch1_A 94 DRVLIAVNGIWAER--AVEMSERYGADVRTIEGPPDRPFSLETLARAIELHQPKCLFLTHGDSSSGLLQPLEGVGQICHQ 171 (396)
T ss_dssp CEEEEEESSHHHHH--HHHHHHHTTCEEEEEECCTTSCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCTTHHHHHHH
T ss_pred CeEEEEcCCcccHH--HHHHHHHcCCceEEecCCCCCCCCHHHHHHHHHhCCCCEEEEECCCCCCceecCHHHHHHHHHH
Confidence 99999999999874 21223456888877753 35555 665 7899999988 889999999999999999
Q ss_pred CCcEEEEEecCccccCCC-CCCcccceEEEecC-ccccccCCCCCCcEEEEEEchhhHhcCCCc---eeeeeecCCCCcc
Q 001989 325 NGVKVVMATDLLALTILK-PPGELGADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGR---IVGVSIDSSGKPA 399 (985)
Q Consensus 325 ~galliV~a~~~~lg~l~-~~~~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~---~vG~t~d~~g~~~ 399 (985)
+|+++++| +..++|... ....+|+|+++.+. |++++ +|++|++++++++++.+... +-.+..+..+.+.
T Consensus 172 ~~~~li~D-ea~~~g~~~~~~~~~~~d~~~~s~~K~~~~-----~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (396)
T 2ch1_A 172 HDCLLIVD-AVASLCGVPFYMDKWEIDAVYTGAQKVLGA-----PPGITPISISPKALDVIRNRRTKSKVFYWDLLLLGN 245 (396)
T ss_dssp TTCEEEEE-CTTTBTTBCCCTTTTTCCEEECCCC-CCCC-----CSSCEEEEECHHHHHHHHTCSSCCSCGGGCHHHHHH
T ss_pred cCCEEEEE-ccccccCCccchhhcCcCEEEEcCCccccC-----CCCeEEEEECHHHHHhhhhccCcccceEechHHHHH
Confidence 99999995 344555332 33568899999887 66743 45679999999877655211 1000000000000
Q ss_pred eeeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCCC---c-
Q 001989 400 LRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPF---F- 475 (985)
Q Consensus 400 ~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~~---~- 475 (985)
+ + ..++..+...+|.|. ....++.+++ ..+..++++++.++..++++++.+.|+++| ++++.+.. .
T Consensus 246 ~---~-~~~~~~~~~~~~~~~---~~~~a~~~al--~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~~~~~~ 315 (396)
T 2ch1_A 246 Y---W-GCYDEPKRYHHTVAS---NLIFALREAL--AQIAEEGLENQIKRRIECAQILYEGLGKMG-LDIFVKDPRHRLP 315 (396)
T ss_dssp H---T-TCSSSCCCCCCCCCH---HHHHHHHHHH--HHHHHHCHHHHHHHHHHHHHHHHHHHHHHT-CCBSSCSGGGBCT
T ss_pred h---h-hhhcccCCCCCCCcH---HHHHHHHHHH--HHHHHhhHHHHHHHHHHHHHHHHHHHHHCC-CeeccCCccccCC
Confidence 0 0 000011122344443 2333333443 444456889999999999999999999886 88764321 1
Q ss_pred ceEEEecC-C--HHHHHHHHHHc-Cceeeee----cCCeEEEEec-cCCCHHHHHHHHHHHhC
Q 001989 476 DTVKVKCA-D--AHAIASAAYKI-EMNLRVV----DSNTVTASFD-ETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 476 ~~~~~~~~-~--~~~v~~~L~~~-GI~~~~~----~~~~lris~t-~~~t~edId~li~aL~~ 529 (985)
..+.+..+ + ..++.++|.++ ||.+... .++.+|++++ ..+|++|+++++++|.+
T Consensus 316 ~~~~~~~~~~~~~~~~~~~L~~~~gi~v~~g~~~~~~~~iRi~~~~~~~~~e~i~~~~~~l~~ 378 (396)
T 2ch1_A 316 TVTGIMIPKGVDWWKVSQYAMNNFSLEVQGGLGPTFGKAWRVGIMGECSTVQKIQFYLYGFKE 378 (396)
T ss_dssp TEEEEECCTTCCHHHHHHHHHHHHCBCCBCCCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHH
T ss_pred ceEEEEcCCCCCHHHHHHHHHHhCCEEEecCccccCCCEEEEECCCCcCCHHHHHHHHHHHHH
Confidence 23556665 2 88899999875 9988642 3578999994 56789999999999974
|
| >2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI structure initiative, joint center for structural genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.82 E-value=3.2e-19 Score=205.94 Aligned_cols=302 Identities=15% Similarity=0.113 Sum_probs=200.1
Q ss_pred hhHHHHHHHHHHHHHHHhCCC--ccc-eecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEE
Q 001989 628 QGYQEMFNNLGEWLCTITGFD--SFS-LQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKI 704 (985)
Q Consensus 628 ~G~~~~~~e~~~~la~l~G~~--~~~-~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~v 704 (985)
+|..++.+++.+++.+.+|.+ ... ++.++|++|+..++.++. .++++|+++...|..+...++..|+++
T Consensus 79 ~g~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~t~a~~~~~~~~~--------~~gd~Vl~~~~~~~~~~~~~~~~g~~~ 150 (409)
T 2gb3_A 79 AGIWELREAFASYYKRRQRVDVKPENVLVTNGGSEAILFSFAVIA--------NPGDEILVLEPFYANYNAFAKIAGVKL 150 (409)
T ss_dssp TCCHHHHHHHHHHHHHTSCCCCCGGGEEEESHHHHHHHHHHHHHC--------CTTCEEEEEESCCTHHHHHHHHHTCEE
T ss_pred CCcHHHHHHHHHHHHHHhCCCCCHHHEEEeCCHHHHHHHHHHHhC--------CCCCEEEEcCCCchhHHHHHHHcCCEE
Confidence 454555555555555555543 333 555667777755544331 367899998888877777778889999
Q ss_pred EEEcCCC--CCCCCHHHHHHHHHhcCCCEEEEEEEcCC-Cccccc--cCHHHHHHHHHHcCCEEEEEcccccccc-C-CC
Q 001989 705 VSVGTDA--KGNINIEELRKAAEANRDNLSTLMVTYPS-THGVYE--EGIDEICKIIHDNGGQVYMDGANMNAQV-G-LT 777 (985)
Q Consensus 705 v~v~~d~--~g~iD~e~L~~~i~~~~~~t~~Vvv~~pn-~~G~i~--~di~eI~~la~~~galliVD~a~~~~~~-~-l~ 777 (985)
+.+|.++ ++.+ +++|+++++ +++++|++++|+ ++|.+. .++++|.++|+++|+++++|+++..... + ..
T Consensus 151 ~~v~~~~~~~~~~-~~~l~~~l~---~~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~Dea~~~~~~~~~~~ 226 (409)
T 2gb3_A 151 IPVTRRMEEGFAI-PQNLESFIN---ERTKGIVLSNPCNPTGVVYGKDEMRYLVEIAERHGLFLIVDEVYSEIVFRGEFA 226 (409)
T ss_dssp EEEECCGGGTSCC-CTTGGGGCC---TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCC
T ss_pred EEeccCCCCCCcc-HHHHHHhhC---cCCeEEEECCCCCCCCCCcCHHHHHHHHHHHHHcCCEEEEECcccccccCCCCC
Confidence 9999875 3344 888988886 689999999985 689874 2589999999999999999999853211 1 00
Q ss_pred C--CCccCCcEEEeCCcccccccCCCCCCceEEEEEcc-cccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHH
Q 001989 778 S--PGYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKK-HLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILP 854 (985)
Q Consensus 778 ~--pg~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~-~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~ 854 (985)
. .+..+.|+++.|+||+|+.| |.++|++++++ ++.+.+..... ..+ +.+ .....
T Consensus 227 ~~~~~~~~~~i~~~s~sK~~g~~----G~r~G~~~~~~~~l~~~l~~~~~------------~~~---~~~----~~~~~ 283 (409)
T 2gb3_A 227 SALSIESDKVVVIDSVSKKFSAC----GARVGCLITRNEELISHAMKLAQ------------GRL---APP----LLEQI 283 (409)
T ss_dssp CGGGSCCTTEEEEEESTTTTTCG----GGCCEEEECSCHHHHHHHHHHHH------------HSC---CCC----HHHHH
T ss_pred CccccCCCCEEEEecchhccCCc----cceEEEEEECcHHHHHHHHHHHh------------ccC---CCC----HHHHH
Confidence 1 11135799999999998532 44589999988 76654421100 011 111 12222
Q ss_pred HHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHC---
Q 001989 855 ISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDY--- 930 (985)
Q Consensus 855 ~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~--- 930 (985)
++.++|.. +.+++++..++..++++++.+.|++ ++.+.. .+.+..+ +.+.++ +.+..++.++|.++
T Consensus 284 a~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~-~~~~~~~--~~~~~~------~~~~~~l~~~l~~~~~~ 353 (409)
T 2gb3_A 284 GSVGLLNL-DDSFFDFVRETYRERVETVLKKLEEHGLKRFT-KPSGAFY--ITAELP------VEDAEEFARWMLTDFNM 353 (409)
T ss_dssp HHHHHHTC-CHHHHHHHHHHHHHHHHHHHHHHHHTTCCCBC-CCSBSSE--EEEECS------SSCHHHHHHHHHHSCCB
T ss_pred HHHHHHhc-cHHHHHHHHHHHHHHHHHHHHHHHHcCceeee-CCCeeEE--EEEEeC------CCCHHHHHHHHHhcccc
Confidence 23333432 4666777777888899999999987 444411 2222222 234543 35688999999987
Q ss_pred ---CCccCCC-CCC-----CCCEEEEeccCCCCHHHHHHHHccCChhHHHHhhccCC
Q 001989 931 ---GFHGPTM-SWP-----VPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRLKMGR 978 (985)
Q Consensus 931 ---Gi~~~~~-~~p-----~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~~~~~ 978 (985)
||.+... .+. ..+.+||+++ ++++||++ +++.|++++++++.+|
T Consensus 354 ~~~gi~v~~g~~f~~~~~~~~~~iRis~~--~~~e~i~~--~~~~l~~~l~~~~~~~ 406 (409)
T 2gb3_A 354 DGETTMVAPLRGFYLTPGLGKKEIRIACV--LEKDLLSR--AIDVLMEGLKMFCSSR 406 (409)
T ss_dssp TTEEEECEEGGGGCSSTTTTSSEEEEECC--SCHHHHHH--HHHHHHHHHHHHHC--
T ss_pred ccCcEEEeCchHhCCCCCCCCCEEEEEeC--CCHHHHHH--HHHHHHHHHHHhhhcc
Confidence 9987532 121 1478999998 89999999 8899999998887654
|
| >2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.82 E-value=2.9e-18 Score=198.37 Aligned_cols=297 Identities=18% Similarity=0.127 Sum_probs=196.8
Q ss_pred HHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc--h
Q 001989 212 SLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL--K 289 (985)
Q Consensus 212 ~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~--~ 289 (985)
...++++.+|+++|.+ ++.++++||.+++.++.++ + ++||+|+++...|+++...+...++..|++++.++. +
T Consensus 57 ~~~~l~~~la~~~g~~--~~~~~~~gt~a~~~al~~l-~--~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 131 (412)
T 2cb1_A 57 TAKALEERLKALEGAL--EAVVLASGQAATFAALLAL-L--RPGDEVVAAKGLFGQTIGLFGQVLSLMGVTVRYVDPEPE 131 (412)
T ss_dssp HHHHHHHHHHHHHTCS--EEEEESSHHHHHHHHHHTT-C--CTTCEEEEETTCCHHHHHHHHHTTTTTTCEEEEECSSHH
T ss_pred HHHHHHHHHHHHhCCC--cEEEECCHHHHHHHHHHHH-h--CCCCEEEEeCCCchhHHHHHHHHHHHcCCEEEEECCCHH
Confidence 3566888999999987 5788899997777666554 2 378999999999999999887666678999999875 6
Q ss_pred hhhc-cCCCEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCcccc-CCCCCCcccceEEEecC-ccccccCCC
Q 001989 290 DIDY-KSGDVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALT-ILKPPGELGADIVVGSA-QRFGVPMGY 365 (985)
Q Consensus 290 ~l~~-l~~~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg-~l~~~~~~GaDi~v~s~-k~lg~P~~~ 365 (985)
+|++ ++++|++|++++| |.+|.+.|+++|+++||++|+++++| +.++.+ ....+.++|+|++++|. |.|++|
T Consensus 132 ~l~~~i~~~~~~v~~~~~~n~~G~~~~l~~i~~l~~~~~~~li~D-~~~~~~~~~~~~~~~~~di~~~S~~K~~~~~--- 207 (412)
T 2cb1_A 132 AVREALSAKTRAVFVETVANPALLVPDLEALATLAEEAGVALVVD-NTFGAAGALCRPLAWGAHVVVESLTKWASGH--- 207 (412)
T ss_dssp HHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEE-CGGGTTTTSCCGGGGTCSEEEEETTTTTTCS---
T ss_pred HHHHHhccCCeEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEE-CCCccccccCCccccCCeEEEECCcccccCC---
Confidence 7777 8889999999988 78999999999999999999999995 344544 44455678999999998 777654
Q ss_pred CCCcEEEEEEchhhH-----hcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHHHHhCc
Q 001989 366 GGPHAAFLATSQEYK-----RMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGP 440 (985)
Q Consensus 366 GGP~~G~l~~~~~~~-----~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~ 440 (985)
|++-.|+++.++++. ..-++...|.... ..| ..+.-.+..| .++.+..+. .+.+..+ ++.+.+.
T Consensus 208 ~~~~G~~~~~~~~~~~~~~~~~~~~~~~g~~~~----~~~--~~~~~~~~~r--~~~~~~~g~-~~~~~~a--~~~~~~l 276 (412)
T 2cb1_A 208 GSVLGGAVLSRETELWRNYPQFLQPDLKGQIPW----EAL--RARCFPERVR--TLGLSLCGM-ALSPFNA--YLLFQGL 276 (412)
T ss_dssp SCCCCEEEEECCCSGGGGSGGGGCC-------H----HHH--GGGHHHHHHH--HHHTTTTCC-CCCHHHH--HHHHHHG
T ss_pred CCcEEEEEEeccccccccccccccccccccchh----hcc--chHHHHHHHH--HHHHHhcCC-CCChHHh--HHHHcCC
Confidence 222234554443321 1111211221000 000 0000001111 122122111 0111111 1233334
Q ss_pred chHHHHHHHHHHHHHHHHHHHhcCCCeEEc-CC----------------CCcceEEEecCCHHHHHHHHHHcCceeeee-
Q 001989 441 EGLKTIAQRVHGLAGTFALGLKKLGTVEVQ-GL----------------PFFDTVKVKCADAHAIASAAYKIEMNLRVV- 502 (985)
Q Consensus 441 ~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~-~~----------------~~~~~~~~~~~~~~~v~~~L~~~GI~~~~~- 502 (985)
+.+++..++..++++++.+.|.+..++.++ .+ .....+.|.+.+.+++.+.|.+.||.+ ..
T Consensus 277 ~~l~~~~~~~~~~~~~l~~~L~~~~~v~~v~~p~~~~~p~~~~~~~~~~~~~~iv~~~~~~~~~~~~~l~~~~i~~-~~s 355 (412)
T 2cb1_A 277 ETVALRVARMSETARFLAERLQGHPKVKALRYPGLPEDPAHRNARKYLASGGPILTLDLGDLERASRFLGAIRLLK-AAN 355 (412)
T ss_dssp GGHHHHHHHHHHHHHHHHHHHHTCTTCSEEECTTSTTCTTHHHHHHHCSSSCSEEEEECSSHHHHHHHHHHCSSEE-CSC
T ss_pred chHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHHhCCCCceEEEEEeCCHHHHHHHHHhCCeee-ecc
Confidence 556667777788999999999987447643 11 122356777723778888888889875 21
Q ss_pred -----------------------------cCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 503 -----------------------------DSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 503 -----------------------------~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
.++.||+|++.++|+++||+|+++|..
T Consensus 356 ~g~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iR~s~g~~~~~~~i~~l~~al~~ 411 (412)
T 2cb1_A 356 LGDARTLLVHPWTTTHSRLKEEARLQAGVTPGLVRVSVGLEDPLDLLALFEEALEA 411 (412)
T ss_dssp CSCSSCEEECTTTTTTTTSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHC
T ss_pred cCCCcceeecCcccccccCCHHHHHhcCCCCCeEEEEeccCCHHHHHHHHHHHHhh
Confidence 147899999999999999999999974
|
| >2vi8_A Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, enzyme memory, pyridoxal phosphate, one-carbon metabolism, PLP-dependent enzymes; HET: PLP; 1.67A {Bacillus stearothermophilus} PDB: 2vi9_A* 2via_A* 2vib_A* 1kkj_A* 1kkp_A* 1kl1_A* 1kl2_A* 1yjs_A* 2w7f_A* 2w7d_A* 2w7e_A* 2w7g_A* 2w7h_A* 1yjz_A* 1yjy_A* 2vgu_A* 2vgs_A* 2vgt_A* 2vgv_A* 2vgw_A* ... | Back alignment and structure |
|---|
Probab=99.81 E-value=1.5e-19 Score=207.73 Aligned_cols=302 Identities=17% Similarity=0.185 Sum_probs=198.8
Q ss_pred HHHHHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHH-H--HHHCC--cEEE
Q 001989 631 QEMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPA-T--AAMCG--MKIV 705 (985)
Q Consensus 631 ~~~~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~-~--a~~~G--~~vv 705 (985)
.++.+++++++++++|.+...+++++|++|++.++.++. .++++|+++...|+.+.. . ....| ++++
T Consensus 68 ~~l~~~~r~~la~~~g~~~~~i~~~sGt~a~~~a~~~~~--------~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~~ 139 (405)
T 2vi8_A 68 DIVEELARERAKQLFGAEHANVQPHSGAQANMAVYFTVL--------EHGDTVLGMNLSHGGHLTHGSPVNFSGVQYNFV 139 (405)
T ss_dssp HHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHHHHHHC--------CTTCEEEEECGGGTCCTTTTCTTSHHHHHSEEE
T ss_pred HHHHHHHHHHHHHHhCCCceEEEecCcHHHHHHHHHHhc--------CCCCEEEEecccccchhcccchhhhccceeEEE
Confidence 344445778999999998766667788877755544431 367899999888887643 1 12333 4888
Q ss_pred EEcCC-CCCCCCHHHHHHHHHhcCCCEEEEEEEcCCCccccccCHHHHHHHHHHcCCEEEEEccccccccCCC-CCCc-c
Q 001989 706 SVGTD-AKGNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLT-SPGY-I 782 (985)
Q Consensus 706 ~v~~d-~~g~iD~e~L~~~i~~~~~~t~~Vvv~~pn~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~-~pg~-~ 782 (985)
.++++ .++.+|+++|++++++ .++++|++ +|+..|... |+++|.++|+++|+++|+|++|..+..+.. .+.. .
T Consensus 140 ~~~~~~~~~~~d~~~l~~~i~~--~~~~~v~~-~~~~~~~~~-~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~~ 215 (405)
T 2vi8_A 140 AYGVDPETHVIDYDDVREKARL--HRPKLIVA-AAAAYPRII-DFAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNPVP 215 (405)
T ss_dssp EECBCTTTCSBCHHHHHHHHHH--HCCSEEEE-CCSSCCSCC-CHHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCSTT
T ss_pred ecccccccCCcCHHHHHHHHHh--cCCeEEEE-eCCCCCccC-CHHHHHHHHHHcCCEEEEEccccccccccCcCCCccc
Confidence 88875 4688999999999973 16777776 455557665 799999999999999999999864321111 1111 1
Q ss_pred CCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHH
Q 001989 783 GADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAM 862 (985)
Q Consensus 783 g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~ 862 (985)
++|+++.|+||+|+ |++| |++++++++.+.+...... .. ..+. +...++++.+.+..
T Consensus 216 ~~di~~~s~sK~~~-----g~~g-G~~~~~~~~~~~l~~~~~~------------~~--~~~~---~~~~~aa~~~al~~ 272 (405)
T 2vi8_A 216 YAHFVTTTTHKTLR-----GPRG-GMILCQEQFAKQIDKAIFP------------GI--QGGP---LMHVIAAKAVAFGE 272 (405)
T ss_dssp TCSEEEEESSSTTC-----CCSC-EEEEECHHHHHHHHHHHTT------------TT--CSSC---CHHHHHHHHHHHHH
T ss_pred cCCEEEEeccccCC-----CCCC-eEEEEcHHHHHHHHhhhcc------------cc--cCCC---CHHHHHHHHHHHHH
Confidence 58999999999984 2335 9999987665433110000 00 0110 11112222344444
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCC---
Q 001989 863 MGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMS--- 938 (985)
Q Consensus 863 lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~--- 938 (985)
+..+++.+..++..++++++.+.|++ ++.+..+.. .. +.+.+.++. .+.+..++.+.|.++||.+....
T Consensus 273 ~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~-~~--~~~~~~~~~----~~~~~~~~~~~l~~~gi~v~~g~~~~ 345 (405)
T 2vi8_A 273 ALQDDFKAYAKRVVDNAKRLASALQNEGFTLVSGGT-DN--HLLLVDLRP----QQLTGKTAEKVLDEVGITVNKNTIPY 345 (405)
T ss_dssp HHSHHHHHHHHHHHHHHHHHHHHHHHTTCEEGGGSC-SS--SEEEEECGG----GTCCHHHHHHHHHHHTEECEEECCTT
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHhCCCeEecCCC-Cc--eEEEEEccC----CCCCHHHHHHHHHHcCceeccCcCcc
Confidence 43456777888889999999999987 444322111 11 224555541 14567889999999999875421
Q ss_pred ---CC-CCCEEEEeccC----CCCHHHHHHHHccCChhHHHHhhcc
Q 001989 939 ---WP-VPGTLMIEPTE----SESKSWTGIVMLSSPSEKKLHRLKM 976 (985)
Q Consensus 939 ---~p-~~~~lris~t~----~~t~eeId~~~~~~~l~~~~~~~~~ 976 (985)
.+ .++.+|++++. ..+++|+++ +++.|+++++++++
T Consensus 346 ~~~~~~~~~~iRis~~~~~~~~~~~~~i~~--~~~~l~~~~~~~~~ 389 (405)
T 2vi8_A 346 DPESPFVTSGIRIGTAAVTTRGFGLEEMDE--IAAIIGLVLKNVGS 389 (405)
T ss_dssp CSSCTTTCSEEEEECHHHHHTTCCHHHHHH--HHHHHHHHHTCTTC
T ss_pred ccCCCCCCCceEEeeeeeeecCCCHHHHHH--HHHHHHHHHhcccc
Confidence 12 24789999987 578999999 88889988877654
|
| >1v72_A Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2.05A {Pseudomonas putida} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.81 E-value=2.3e-19 Score=202.25 Aligned_cols=290 Identities=16% Similarity=0.163 Sum_probs=190.3
Q ss_pred HHHHHHHHHHHHhCCCcc-ceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHH--HHHC--CcEEEEE
Q 001989 633 MFNNLGEWLCTITGFDSF-SLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPAT--AAMC--GMKIVSV 707 (985)
Q Consensus 633 ~~~e~~~~la~l~G~~~~-~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~--a~~~--G~~vv~v 707 (985)
...++++++++++|. .. .+++++|++|++.++.+++ .++++|+++...|+..... +... |++++.+
T Consensus 44 ~~~~l~~~la~~~g~-~~~v~~~~~gt~a~~~al~~~~--------~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~~v 114 (356)
T 1v72_A 44 LTAQVKRKFCEIFER-DVEVFLVPTGTAANALCLSAMT--------PPWGNIYCHPASHINNDECGAPEFFSNGAKLMTV 114 (356)
T ss_dssp HHHHHHHHHHHHHTS-CCEEEEESCHHHHHHHHHHTSC--------CTTEEEEECTTSHHHHSSTTHHHHHTTSCEEEEC
T ss_pred HHHHHHHHHHHHhCC-CCcEEEeCCccHHHHHHHHHhc--------CCCCEEEEcCccchhhhhchHHHHHhCCcEEEEe
Confidence 456889999999994 43 4667888887755544332 3678999998877654433 5555 9999999
Q ss_pred cCCCCCCCCHHHHHH-HHHhc----CCCEEEEEEEcCCCccc---cccCHHHHHHHHHHcCCEEEEEcccccc---ccCC
Q 001989 708 GTDAKGNINIEELRK-AAEAN----RDNLSTLMVTYPSTHGV---YEEGIDEICKIIHDNGGQVYMDGANMNA---QVGL 776 (985)
Q Consensus 708 ~~d~~g~iD~e~L~~-~i~~~----~~~t~~Vvv~~pn~~G~---i~~di~eI~~la~~~galliVD~a~~~~---~~~l 776 (985)
|.+ ++.+|+++|++ ++++. .+++++|++++|+.+|. .+ ++++|.++|+++|+++|+|+++... ..+.
T Consensus 115 ~~~-~~~~d~~~l~~~~i~~~~~~~~~~~~~v~~~~~~~tG~~~~~~-~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~ 192 (356)
T 1v72_A 115 DGP-AAKLDIVRLRERTREKVGDVHTTQPACVSITQATEVGSIYTLD-EIEAIGDVCKSSSLGLHMDGSRFANALVSLGC 192 (356)
T ss_dssp CCG-GGCCCHHHHHHHTTSSTTCTTSCEEEEEEEESSCTTSCCCCHH-HHHHHHHHHHHTTCEEEEEETTHHHHHHHHTC
T ss_pred cCC-CCeEcHHHHHHHhhhcchhhccCCceEEEEEcCCCCCccCCHH-HHHHHHHHHHHcCCeEEEEchhhHhHhccCCC
Confidence 875 57899999999 88621 12689999999877898 44 7999999999999999999998421 1121
Q ss_pred CCCCc----cCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHH
Q 001989 777 TSPGY----IGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALI 852 (985)
Q Consensus 777 ~~pg~----~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~ 852 (985)
.+.. .++|++++++||+ +.| .|.|++++++++.+.+... ... .+..... +.
T Consensus 193 -~~~~~~~~~~~d~~~~s~sK~-g~~-----~G~g~~~~~~~~~~~~~~~-~~~------------~~~~~~~--~~--- 247 (356)
T 1v72_A 193 -SPAEMTWKAGVDALSFGATKN-GVL-----AAEAIVLFNTSLATEMSYR-RKR------------AGHLSSK--MR--- 247 (356)
T ss_dssp -CTTTTTGGGTCCEEEECCGGG-TCS-----SCEEEEESSGGGHHHHHHH-HHH------------TTCCCSS--TH---
T ss_pred -CHHHhhhhhcCCEEEEecccC-CCc-----CccEEEEECHHHHhhHHHH-hhc------------cCchhhh--HH---
Confidence 2222 3689999999998 322 2557888887765443210 000 0111110 01
Q ss_pred HHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhccCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCC
Q 001989 853 LPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGF 932 (985)
Q Consensus 853 ~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi 932 (985)
.++...+..+..+.+.+..++..++++++.+.|++..++....+.... .+.+.++ .++.++|.++||
T Consensus 248 -~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~--~~~~~~~----------~~~~~~l~~~gi 314 (356)
T 1v72_A 248 -FLSAQIDAYLTDDLWLRNARKANAAAQRLAQGLEGLGGVEVLGGTEAN--ILFCRLD----------SAMIDALLKAGF 314 (356)
T ss_dssp -HHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHTTCTTEEEESCCCSS--EEEEEEC----------HHHHHHHHHTTC
T ss_pred -HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhCCCcEEccCCCcc--EEEEEcC----------HHHHHHHHhcCe
Confidence 111223444544445555667788889999999762233221221222 2334432 378999999999
Q ss_pred ccCCCCCCCCCEEEEeccCCCCHHHHHHHHccCChhHHHHhh
Q 001989 933 HGPTMSWPVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRL 974 (985)
Q Consensus 933 ~~~~~~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~ 974 (985)
.+....++ .+.+|++++..+|++|+++ +++.|++++++.
T Consensus 315 ~v~~g~~~-~~~iRi~~~~~~~~~~i~~--~~~~l~~~l~~~ 353 (356)
T 1v72_A 315 GFYHDRWG-PNVVRFVTSFATTAEDVDH--LLNQVRLAADRT 353 (356)
T ss_dssp BCBCSSSS-TTEEEEECCTTCCHHHHHH--HHHHHHHTC---
T ss_pred EEeccccC-CCeEEEEecCCCCHHHHHH--HHHHHHHHHHhh
Confidence 87643344 5899999999999999999 778887776554
|
| >3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence, acyltransferase, aminotransferase, pyridoxal PHO transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A | Back alignment and structure |
|---|
Probab=99.81 E-value=2.5e-19 Score=206.75 Aligned_cols=286 Identities=15% Similarity=0.104 Sum_probs=196.9
Q ss_pred HHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcCCCCC
Q 001989 634 FNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKG 713 (985)
Q Consensus 634 ~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~d~~g 713 (985)
..++++++++++|.+.. +++++|+++++.++.++. .++|+|+++...|+.+.......|++++.++.
T Consensus 106 ~~~l~~~la~~~g~~~~-i~~~sGt~a~~~~l~~~~--------~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~---- 172 (409)
T 3kki_A 106 KPMIEKRLAKFTGFDEC-LLSQSGWNANVGLLQTIC--------QPNTNVYIDFFAHMSLWEGARYANAQAHPFMH---- 172 (409)
T ss_dssp SCHHHHHHHHHHTCSEE-EEESCHHHHHHHHHHHHC--------CTTCEEEEETTSCHHHHHHHHHTTCEEEEECT----
T ss_pred HHHHHHHHHHHhCCCeE-EEecchHHHHHHHHHHhc--------CCCCEEEECCCcCHHHHHHHHHcCCeEEEecC----
Confidence 34788999999998764 556788877755544331 47899999999898887778889999988875
Q ss_pred CCCHHHHHHHHHhcCCCEEEEEEEcCC-CccccccCHHHHHHHHHHcCCEEEEEccccccccCC-CCC------CccCCc
Q 001989 714 NINIEELRKAAEANRDNLSTLMVTYPS-THGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGL-TSP------GYIGAD 785 (985)
Q Consensus 714 ~iD~e~L~~~i~~~~~~t~~Vvv~~pn-~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l-~~p------g~~g~D 785 (985)
+|+++|++++++ .++++|++++|+ ++|.+. |+++|.++|+++|+++++|++|..+..+. ..+ ...++|
T Consensus 173 -~d~~~le~~l~~--~~~~~vi~~~~~nptG~~~-~l~~l~~la~~~~~~li~De~~~~g~~g~~g~~~~~~~~~~~~~d 248 (409)
T 3kki_A 173 -NNCDHLRMLIQR--HGPGIIVVDSIYSTLGTIA-PLAELVNISKEFGCALLVDESHSLGTHGPNGAGLLAELGLTREVH 248 (409)
T ss_dssp -TCHHHHHHHHHH--HCSCEEEEESBCTTTCCBC-CHHHHHHHHHHHTCEEEEECTTTTTTSSGGGCCHHHHHTCGGGCS
T ss_pred -CCHHHHHHHHHh--cCCeEEEECCCCCCCCCcC-CHHHHHHHHHHcCCEEEEECCccccccCCCCCcchhhcCCCCCCC
Confidence 589999999984 246889999884 699998 89999999999999999999985322111 000 112579
Q ss_pred EEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcH
Q 001989 786 VCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGS 865 (985)
Q Consensus 786 i~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~ 865 (985)
+++.+++|+|+. + +|++++++++.+.+....... ..+. .. +...++++.+.+..+..
T Consensus 249 i~~~s~sK~~~~------~-gg~v~~~~~~~~~~~~~~~~~-----------~~~~-~~----~~~~~aa~~aal~~~~~ 305 (409)
T 3kki_A 249 FMTASLAKTFAY------R-AGAIWCNNEVNRCVPFISYPA-----------IFSS-TL----LPYEAAGLETTLEIIES 305 (409)
T ss_dssp EEEEESSSTTCS------S-CEEEEESSSGGGTHHHHCHHH-----------HHSB-CC----CHHHHHHHHHHHHHHHH
T ss_pred EEEeecchhhCC------C-ceEEEECHHHHHHHHHhCcCc-----------cccC-CC----cHHHHHHHHHHHHHHhc
Confidence 999999999842 2 489998887765442110000 0000 01 12223333344444432
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCCCC----
Q 001989 866 KGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWP---- 940 (985)
Q Consensus 866 eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~~p---- 940 (985)
. .+..++..++++++.+.|++ ++.+. + .+.. +.+.++. ..+..++.++|.++||.+....+|
T Consensus 306 ~--~~~~~~~~~~~~~l~~~L~~~g~~~~--~-~~~~---~~~~~~~-----~~~~~~~~~~L~~~Gv~v~~~~~~~~~~ 372 (409)
T 3kki_A 306 A--DNRRQHLDRMARKLRIGLSQLGLTIR--S-ESQI---IGLETGD-----ERNTEKVRDYLESNGVFGSVFCRPATSK 372 (409)
T ss_dssp C--HHHHHHHHHHHHHHHHHHHTTTCCCC--C-SSSE---EEEEEES-----HHHHHHHHHHHHHTTEECEEECTTSSCT
T ss_pred C--HHHHHHHHHHHHHHHHHHHHcCCccC--C-CCCE---EEEEeCC-----HHHHHHHHHHHHHCCceEeeeCCCCcCC
Confidence 2 45556678889999999987 55543 2 1222 3344431 124567999999999987543333
Q ss_pred CCCEEEEeccCCCCHHHHHHHHccCChhHHHHhh
Q 001989 941 VPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRL 974 (985)
Q Consensus 941 ~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~ 974 (985)
..+.+||+++..+|++||++ +++.|++++++.
T Consensus 373 ~~~~iRi~~~~~~t~e~i~~--~~~~l~~~l~~~ 404 (409)
T 3kki_A 373 NKNIIRLSLNSDVNDEQIAK--IIEVCSDAVNYG 404 (409)
T ss_dssp TCEEEEEECCTTCCHHHHHH--HHHHHHHHHHHS
T ss_pred CCcEEEEEccCCCCHHHHHH--HHHHHHHHHhcC
Confidence 23789999999999999999 889999888764
|
| >2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.81 E-value=5.3e-19 Score=200.99 Aligned_cols=289 Identities=11% Similarity=0.055 Sum_probs=190.3
Q ss_pred hhHHHHHHHHHHHHHHHhCC--Cccc-eecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEE
Q 001989 628 QGYQEMFNNLGEWLCTITGF--DSFS-LQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKI 704 (985)
Q Consensus 628 ~G~~~~~~e~~~~la~l~G~--~~~~-~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~v 704 (985)
+|..++.+++.+++.+.+|. +... ++.++|++|+..++.++. .++++|+++++.|..+...++..|+++
T Consensus 66 ~~~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~~~a~~~~~~~~~--------~~gd~vl~~~p~~~~~~~~~~~~g~~~ 137 (370)
T 2z61_A 66 RGILELREKISELYKDKYKADIIPDNIIITGGSSLGLFFALSSII--------DDGDEVLIQNPCYPCYKNFIRFLGAKP 137 (370)
T ss_dssp TCCHHHHHHHHHHHHHHSSCCCCGGGEEEESSHHHHHHHHHHHHC--------CTTCEEEEESSCCTHHHHHHHHTTCEE
T ss_pred CCCHHHHHHHHHHHHHHhCCCCChhhEEECCChHHHHHHHHHHhc--------CCCCEEEEeCCCchhHHHHHHHcCCEE
Confidence 34445555555555555553 3333 555677777655444331 367899999888877777788899999
Q ss_pred EEEcCCCCCCCCHHHHHHHHHhcCCCEEEEEEEcCC-CccccccCHHHHHHHHHHcCCEEEEEcccccccc-C-CCCC--
Q 001989 705 VSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPS-THGVYEEGIDEICKIIHDNGGQVYMDGANMNAQV-G-LTSP-- 779 (985)
Q Consensus 705 v~v~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~pn-~~G~i~~di~eI~~la~~~galliVD~a~~~~~~-~-l~~p-- 779 (985)
+.+| +|+++|+++++ +++++|++++|+ ++|.+. |++ |.++|+++|+++++|+++..... + ....
T Consensus 138 ~~v~------~d~~~l~~~l~---~~~~~v~~~~p~nptG~~~-~~~-l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~ 206 (370)
T 2z61_A 138 VFCD------FTVESLEEALS---DKTKAIIINSPSNPLGEVI-DRE-IYEFAYENIPYIISDEIYNGLVYEGKCYSAIE 206 (370)
T ss_dssp EEEC------SSHHHHHHHCC---SSEEEEEEESSCTTTCCCC-CHH-HHHHHHHHCSEEEEECTTTTCBSSSCCCCGGG
T ss_pred EEeC------CCHHHHHHhcc---cCceEEEEcCCCCCcCccc-CHH-HHHHHHHcCCEEEEEcchhhcccCCCCcCHHH
Confidence 9888 59999999997 689999999995 699998 788 99999999999999999853211 1 0111
Q ss_pred --CccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHH
Q 001989 780 --GYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISY 857 (985)
Q Consensus 780 --g~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~ 857 (985)
+..+.|+++.|+||+|+.| |.++|++++++++.+.+.....+ .+.+. +.....++.
T Consensus 207 ~~~~~~~~i~~~s~sK~~~~~----G~r~G~~~~~~~~~~~~~~~~~~------------~~~~~------~~~~~~a~~ 264 (370)
T 2z61_A 207 FDENLEKTILINGFSKLYAMT----GWRIGYVISNDEIIEAILKLQQN------------LFISA------PTISQYAAL 264 (370)
T ss_dssp TCTTCSSEEEEEESTTTTTCG----GGCCEEEECCHHHHHHHHHHHHH------------HTSSS------CHHHHHHHG
T ss_pred ccCCCCcEEEEecChhccCCc----cceEEEEEECHHHHHHHHHHHhh------------cccCC------CHHHHHHHH
Confidence 1346789999999998532 45689999988766544211000 00111 112222222
Q ss_pred HHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHH-HCCCccC
Q 001989 858 TYIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLM-DYGFHGP 935 (985)
Q Consensus 858 a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~-~~Gi~~~ 935 (985)
++|..++.+.+++..++..++++++.+.|++ ++.+. .+.+..+ +.+.++ + +..++.++|. ++||.+.
T Consensus 265 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~--~~~~~~~--~~~~~~------~-~~~~~~~~l~~~~gi~v~ 333 (370)
T 2z61_A 265 KAFEKETEREINSMIKEFDRRRRLVLKYVKDFGWEVN--NPIGAYY--VFPNIG------E-DGREFAYKLLKEKFVALT 333 (370)
T ss_dssp GGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCBCC--CCCBTTE--ECCBCS------S-CHHHHHHHHHHHHCEECE
T ss_pred HHHhccCHHHHHHHHHHHHHHHHHHHHHHHHcCCeec--CCCcceE--EEEecC------C-CHHHHHHHHHHhCCEEEe
Confidence 3343323556667777788889999999987 44332 2222221 223443 2 6788999997 7899875
Q ss_pred CC-CCC--CCCEEEEeccCCCCHHHHHHHHccCChhHHHH
Q 001989 936 TM-SWP--VPGTLMIEPTESESKSWTGIVMLSSPSEKKLH 972 (985)
Q Consensus 936 ~~-~~p--~~~~lris~t~~~t~eeId~~~~~~~l~~~~~ 972 (985)
.. .+. ..+++||+++ +++++|++ +++.|+++++
T Consensus 334 ~g~~f~~~~~~~~Ri~~~--~~~~~i~~--~~~~l~~~l~ 369 (370)
T 2z61_A 334 PGIGFGSKGKNYIRISYA--NSYENIKE--GLERIKEFLN 369 (370)
T ss_dssp EGGGGCGGGSSBEEEECC--SCHHHHHH--HHHHHHHHHC
T ss_pred CchhhCCCCCCEEEEEEe--CCHHHHHH--HHHHHHHHHh
Confidence 32 222 2478999998 69999999 7777777654
|
| >1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS protein structure initiative, joint center for structural G transferase; HET: PLP; 1.90A {Thermotoga maritima} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.81 E-value=4.9e-19 Score=203.05 Aligned_cols=293 Identities=12% Similarity=0.089 Sum_probs=193.6
Q ss_pred hhHHHHHHHHHHHHHHHhCC--Cccc-eecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEE
Q 001989 628 QGYQEMFNNLGEWLCTITGF--DSFS-LQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKI 704 (985)
Q Consensus 628 ~G~~~~~~e~~~~la~l~G~--~~~~-~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~v 704 (985)
+|..++.+++.+++.+.+|. +... ++.++|++|+..++.++. .++++|++++..|..+...++..|+++
T Consensus 78 ~g~~~lr~~la~~~~~~~g~~~~~~~v~~~~g~t~al~~~~~~l~--------~~gd~Vl~~~~~~~~~~~~~~~~g~~~ 149 (389)
T 1o4s_A 78 RGIYELREGIAKRIGERYKKDISPDQVVVTNGAKQALFNAFMALL--------DPGDEVIVFSPVWVSYIPQIILAGGTV 149 (389)
T ss_dssp TCCHHHHHHHHHHHHHHHTCCCCGGGEEEESHHHHHHHHHHHHHC--------CTTCEEEEEESCCTTHHHHHHHTTCEE
T ss_pred CCCHHHHHHHHHHHHHHhCCCCCHHHEEEecCHHHHHHHHHHHhC--------CCCCEEEEcCCCchhHHHHHHHcCCEE
Confidence 35555555566666665686 3334 445666666654444331 367899998888888888888899999
Q ss_pred EEEcCCC--CCCCCHHHHHHHHHhcCCCEEEEEEEcCC-Cccccc--cCHHHHHHHHHHcCCEEEEEcccccccc-C-CC
Q 001989 705 VSVGTDA--KGNINIEELRKAAEANRDNLSTLMVTYPS-THGVYE--EGIDEICKIIHDNGGQVYMDGANMNAQV-G-LT 777 (985)
Q Consensus 705 v~v~~d~--~g~iD~e~L~~~i~~~~~~t~~Vvv~~pn-~~G~i~--~di~eI~~la~~~galliVD~a~~~~~~-~-l~ 777 (985)
+.+|.++ ++.+|+++|+++++ +++++|++++|+ ++|.+. .++++|.++|+++|+++++|+++..... + ..
T Consensus 150 ~~v~~~~~~~~~~d~~~l~~~l~---~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~g~~~ 226 (389)
T 1o4s_A 150 NVVETFMSKNFQPSLEEVEGLLV---GKTKAVLINSPNNPTGVVYRREFLEGLVRLAKKRNFYIISDEVYDSLVYTDEFT 226 (389)
T ss_dssp EEEECCGGGTTCCCHHHHHHTCC---TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBCSSCCC
T ss_pred EEEecCCccCCCCCHHHHHHhcc---cCceEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCC
Confidence 9999875 46789999999997 689999999985 699985 1499999999999999999999853211 1 00
Q ss_pred CCC----ccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHH
Q 001989 778 SPG----YIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALIL 853 (985)
Q Consensus 778 ~pg----~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~ 853 (985)
... ..+.|+++.|+||+|+.| |.++|++++++++.+.+.....+ .+.+.+ ....
T Consensus 227 ~~~~~~~~~~~~i~~~s~sK~~~~~----G~r~G~l~~~~~~~~~l~~~~~~------------~~~~~~------~~~~ 284 (389)
T 1o4s_A 227 SILDVSEGFDRIVYINGFSKSHSMT----GWRVGYLISSEKVATAVSKIQSH------------TTSCIN------TVAQ 284 (389)
T ss_dssp CHHHHCSSSTTEEEEEESTTTTTCG----GGCCEEEECCHHHHHHHHHHHHH------------HTCSCC------HHHH
T ss_pred CHhhcCCCCCcEEEEeechhhcCCc----ccceEEEEeCHHHHHHHHHHhhh------------cccCCC------HHHH
Confidence 111 146799999999998532 45589999987765443211000 011111 1111
Q ss_pred HHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHH-HCC
Q 001989 854 PISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLM-DYG 931 (985)
Q Consensus 854 ~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~-~~G 931 (985)
.++.+ .+.. ++.+..++..++++++.+.|++ ++.+. .+.+..+ +.+.++ .+..++.++|. ++|
T Consensus 285 ~a~~~---~l~~-~~~~~~~~~~~~~~~l~~~L~~~g~~~~--~~~~~~~--~~~~~~-------~~~~~l~~~l~~~~g 349 (389)
T 1o4s_A 285 YAALK---ALEV-DNSYMVQTFKERKNFVVERLKKMGVKFV--EPEGAFY--LFFKVR-------GDDVKFCERLLEEKK 349 (389)
T ss_dssp HHHHH---HTTC-CCHHHHHHHHHHHHHHHHHHHHTTCCCC--CCSBSSE--EEEECS-------SCHHHHHHHHHHHHC
T ss_pred HHHHH---HHhc-cHHHHHHHHHHHHHHHHHHHHhcCCeee--cCCcceE--EEEeCC-------CCHHHHHHHHHHHCC
Confidence 22222 2322 3566667788889999999987 44442 2222222 234442 35788999997 889
Q ss_pred CccCCC-CCCCCCEEEEeccCCCCHHHHHHHHccCChhHHHH
Q 001989 932 FHGPTM-SWPVPGTLMIEPTESESKSWTGIVMLSSPSEKKLH 972 (985)
Q Consensus 932 i~~~~~-~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~ 972 (985)
|.+... .+..++++||+++ .++++|++ +++.|+++++
T Consensus 350 i~v~~g~~f~~~~~~Ris~~--~~~~~l~~--~l~~l~~~l~ 387 (389)
T 1o4s_A 350 VALVPGSAFLKPGFVRLSFA--TSIERLTE--ALDRIEDFLN 387 (389)
T ss_dssp EECEEGGGGTCTTEEEEECC--SCHHHHHH--HHHHHHHHHT
T ss_pred EEEeCchhcCCCCeEEEEEe--CCHHHHHH--HHHHHHHHHh
Confidence 987532 2333579999998 38999999 7677777654
|
| >2dkj_A Serine hydroxymethyltransferase; PLP dependent enzyme, structural genomics; HET: PLP; 1.15A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.81 E-value=2.8e-19 Score=205.62 Aligned_cols=292 Identities=20% Similarity=0.207 Sum_probs=194.5
Q ss_pred HHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccH---HHHHHCCc--EEEEEcCCC
Q 001989 637 LGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNP---ATAAMCGM--KIVSVGTDA 711 (985)
Q Consensus 637 ~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~---~~a~~~G~--~vv~v~~d~ 711 (985)
+++++++++|.+...+++++|++|+..++.++. .++++|++++..|+.+. ..++..|. ..+.+++++
T Consensus 74 ar~~la~~~g~~~~~i~~~sGt~a~~~~~~~~~--------~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 145 (407)
T 2dkj_A 74 AIERAKALFGAAWANVQPHSGSQANMAVYMALM--------EPGDTLMGMDLAAGGHLTHGSRVNFSGKLYKVVSYGVRP 145 (407)
T ss_dssp HHHHHHHHHTCSEEECCCSSHHHHHHHHHHHHC--------CTTCEEEEECGGGTCCGGGTCTTSHHHHHSEEEEECCCT
T ss_pred HHHHHHHHhCCCcceEEecchHHHHHHHHHHhc--------CCCCEEEEecccccCccchHHHHHhcCceEEEEecCCCc
Confidence 456999999998766777788876655544331 36789999988887763 33344455 555555553
Q ss_pred -CCCCCHHHHHHHHHhcCCCEEEEEEEcCCCccccccCHHHHHHHHHHcCCEEEEEccccccccCCC---CCCccCCcEE
Q 001989 712 -KGNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLT---SPGYIGADVC 787 (985)
Q Consensus 712 -~g~iD~e~L~~~i~~~~~~t~~Vvv~~pn~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~---~pg~~g~Di~ 787 (985)
++.+|+++|++++++ +++++|++++|+. |.+. |+++|.++|+++|+++++|++|..+..... .+.. ..|++
T Consensus 146 ~~~~~d~~~l~~~l~~--~~~~~v~~~~p~~-~~~~-~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~~-~~di~ 220 (407)
T 2dkj_A 146 DTELIDLEEVRRLALE--HRPKVIVAGASAY-PRFW-DFKAFREIADEVGAYLVVDMAHFAGLVAAGLHPNPLP-YAHVV 220 (407)
T ss_dssp TTSSCCHHHHHHHHHH--HCCSEEEECCSSC-CSCC-CHHHHHHHHHHHTCEEEEECTTTHHHHHTTCSCCCTT-TCSEE
T ss_pred ccCccCHHHHHHHHhh--cCCeEEEEecccc-CCCC-CHHHHHHHHHHcCCEEEEEccccccccccCccCCccc-cccEE
Confidence 578999999999972 2678888877764 5666 899999999999999999999864332111 1112 37999
Q ss_pred EeCCcccccccCCCCCCceEEEEEc-ccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHH
Q 001989 788 HLNLHKTFCIPHGGGGPGMGPIGVK-KHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSK 866 (985)
Q Consensus 788 ~~s~hK~l~~p~g~GGPg~G~i~~~-~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~e 866 (985)
+.|+||++ +||.+|+++++ +++.+.+...... ..++. . +...++++.+.+..+..+
T Consensus 221 ~~s~sK~l------~g~~~G~~~~~~~~~~~~l~~~~~~-----------~~~~~-~-----~~~~~~a~~~al~~~~~~ 277 (407)
T 2dkj_A 221 TSTTHKTL------RGPRGGLILSNDPELGKRIDKLIFP-----------GIQGG-P-----LEHVIAGKAVAFFEALQP 277 (407)
T ss_dssp EEESSGGG------CCCSCEEEEESCHHHHHHHHHHHTT-----------TTCSS-C-----CHHHHHHHHHHHHHHHSH
T ss_pred EEeccccC------CCCCceEEEECCHHHHHHHHhhhcc-----------cccCC-C-----cHHHHHHHHHHHHHHHHh
Confidence 99999987 35656999998 5665443211000 00111 1 111122233445544345
Q ss_pred HHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCCC------
Q 001989 867 GLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSW------ 939 (985)
Q Consensus 867 Gl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~~------ 939 (985)
++.+..++..++++++.+.|++ ++++... +... +.+.+.++. .+.+..++.+.|.++||.+.....
T Consensus 278 ~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~-~~~~--~~~~~~~~~----~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~ 350 (407)
T 2dkj_A 278 EFKEYSRLVVENAKRLAEELARRGYRIVTG-GTDN--HLFLVDLRP----KGLTGKEAEERLDAVGITVNKNAIPFDPKP 350 (407)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCEEGGG-SCSS--SEEEEECGG----GTCCHHHHHHHHHHTTEECEECCCTTCSSC
T ss_pred hHHHHHHHHHHHHHHHHHHHHhCCceeecC-CCCc--eEEEEECcc----cCCCHHHHHHHHHHcCceecCCcCcccccc
Confidence 6778888888999999999987 4443211 1112 224455541 135688999999999998754221
Q ss_pred C-CCCEEEEeccCC----CCHHHHHHHHccCChhHHHHh
Q 001989 940 P-VPGTLMIEPTES----ESKSWTGIVMLSSPSEKKLHR 973 (985)
Q Consensus 940 p-~~~~lris~t~~----~t~eeId~~~~~~~l~~~~~~ 973 (985)
+ .++.+|++++.. .|++|+++ +++.|++++++
T Consensus 351 ~~~~~~iRis~~~~~~~~~~~~~i~~--~~~~l~~~~~~ 387 (407)
T 2dkj_A 351 PRVTSGIRIGTPAITTRGFTPEEMPL--VAELIDRALLE 387 (407)
T ss_dssp TTTCSEEEEECHHHHHTTCCGGGHHH--HHHHHHHHHHH
T ss_pred ccCCCceeeecccccccCCCHHHHHH--HHHHHHHHHhc
Confidence 1 257899999764 89999999 88888888876
|
| >3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.8e-18 Score=198.58 Aligned_cols=299 Identities=13% Similarity=0.160 Sum_probs=197.2
Q ss_pred hhHHHHHHHHHHHHHHHhCC--Cccc-eecCcHHHHHHHHHHHHHHHHHhcCCCCC-CEEEEcCCCCcccHHHHHHCCcE
Q 001989 628 QGYQEMFNNLGEWLCTITGF--DSFS-LQPNAGAAGEYAGLMVIRAYHKARGDHHR-NVCIIPVSAHGTNPATAAMCGMK 703 (985)
Q Consensus 628 ~G~~~~~~e~~~~la~l~G~--~~~~-~~~~sGa~a~~a~l~air~~~~~~g~~~~-~~IIv~~~~Hg~~~~~a~~~G~~ 703 (985)
.|..++.+++.+++.+.+|. +... ++.++|++|+..++.++. .++ ++|+++.+.|..+...++..|++
T Consensus 76 ~g~~~lr~~la~~l~~~~g~~~~~~~i~~~~g~~~al~~~~~~l~--------~~g~d~vl~~~p~~~~~~~~~~~~g~~ 147 (398)
T 3ele_A 76 QGDVETRAAIAEFLNNTHGTHFNADNLYMTMGAAASLSICFRALT--------SDAYDEFITIAPYFPEYKVFVNAAGAR 147 (398)
T ss_dssp TCCHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHHHHHHHHC--------CSTTCEEEEESSCCTHHHHHHHHTTCE
T ss_pred CCcHHHHHHHHHHHHHHhCCCCChHHEEEccCHHHHHHHHHHHHc--------CCCCCEEEEeCCCchhhHHHHHHcCCE
Confidence 46667777788888888884 3334 455666766654444331 367 89999888887777778889999
Q ss_pred EEEEcCCC-CCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccC---HHHHHHHHHH------cCCEEEEEcccccc
Q 001989 704 IVSVGTDA-KGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEG---IDEICKIIHD------NGGQVYMDGANMNA 772 (985)
Q Consensus 704 vv~v~~d~-~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~d---i~eI~~la~~------~galliVD~a~~~~ 772 (985)
++.+|+++ ++.+|+++|+++++ +++++|++++| |++|.+. + +++|+++|++ +|+++++|+++...
T Consensus 148 ~~~v~~~~~~~~~d~~~l~~~l~---~~~~~v~~~~p~nptG~~~-~~~~l~~l~~~~~~~~~~~~~~~~li~De~~~~~ 223 (398)
T 3ele_A 148 LVEVPADTEHFQIDFDALEERIN---AHTRGVIINSPNNPSGTVY-SEETIKKLSDLLEKKSKEIGRPIFIIADEPYREI 223 (398)
T ss_dssp EEEECCCTTTSSCCHHHHHHTCC---TTEEEEEECSSCTTTCCCC-CHHHHHHHHHHHHHHHHHHTSCCEEEEECTTTTC
T ss_pred EEEEecCCcCCcCCHHHHHHHhC---cCCCEEEEcCCCCCCCCCC-CHHHHHHHHHHHHhhhhccCCCeEEEEecccccc
Confidence 99999975 46899999999997 78999999998 4699986 4 7888899999 99999999998521
Q ss_pred c-cC--CCC-CCccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCC--CCccccCCCCCCCCCCCCCCCCCCcc
Q 001989 773 Q-VG--LTS-PGYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLP--SHPVVSTGGIPAPEKSQPLGTIAAAP 846 (985)
Q Consensus 773 ~-~~--l~~-pg~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp--~~~~g~~~~~~~~~~~~~~~~i~s~~ 846 (985)
. .+ +.. ....+.++++.|++|+|+. .|.++|++++++++..... ...... ....+..+.
T Consensus 224 ~~~~~~~~~~~~~~~~~i~~~s~sK~~~~----~G~r~G~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~-- 288 (398)
T 3ele_A 224 VYDGIKVPFVTKYYDNTLVCYSYSKSLSL----PGERIGYVLVPDEVYDKAELYAAVCGA---------GRALGYVCA-- 288 (398)
T ss_dssp BCTTCCCCCGGGTCSSEEEEEESTTTSSC----TTTCCEEEECCTTSTTHHHHHHHHHHH---------HHHTTCCCS--
T ss_pred ccCCCCcCChHhhcCCeEEEEehhhcCCC----ccceeEEEEEcchhhhHHHHHHHHHHH---------hhhccccCC--
Confidence 1 11 111 1234567889999999854 3678999998876543210 000000 000011111
Q ss_pred hhhhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHH
Q 001989 847 WGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAK 925 (985)
Q Consensus 847 ~g~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~ 925 (985)
+.....++...+. ... ..++..++++++.+.|++ ++.+. .+.+..+ +.+.++ +.+..++.+
T Consensus 289 --~~~~~~a~~~~l~---~~~---~~~~~~~~~~~l~~~L~~~g~~~~--~~~~~~~--~~~~~~------~~~~~~~~~ 350 (398)
T 3ele_A 289 --PSLFQKMIVKCQG---ATG---DINAYKENRDLLYEGLTRIGYHCF--KPDGAFY--MFVKAL------EDDSNAFCE 350 (398)
T ss_dssp --CHHHHHHHTTCTT---CCC---CHHHHHHHHHHHHHHHHHHTCCEE--CCSBSSE--EEEECS------SSCHHHHHH
T ss_pred --CHHHHHHHHHHhc---CHH---HHHHHHHHHHHHHHHHHHcCCeec--CCCeeEE--EEEEcC------CCCHHHHHH
Confidence 1111111111221 111 234566778889888886 55543 2222222 345554 346889999
Q ss_pred HHHHCCCccCCC-CCCCCCEEEEeccCCCCHHHHHHHHccCChhHHHHhhc
Q 001989 926 RLMDYGFHGPTM-SWPVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRLK 975 (985)
Q Consensus 926 ~L~~~Gi~~~~~-~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~~ 975 (985)
.|.++||.+... .+..++++||+++ +++|||++ +++.|++++++++
T Consensus 351 ~l~~~gi~v~~g~~~~~~~~iRis~~--~~~e~i~~--~l~~l~~~l~~~~ 397 (398)
T 3ele_A 351 KAKEEDVLIVAADGFGCPGWVRISYC--VDREMIKH--SMPAFEKIYKKYN 397 (398)
T ss_dssp HHHTTTEECEESGGGTCTTEEEEECC--SCHHHHHH--HHHHHHHHHHHHC
T ss_pred HHHHCCEEEeCccccCCCCeEEEEec--CCHHHHHH--HHHHHHHHHHHhh
Confidence 999999987542 2333589999996 69999999 8899999888765
|
| >2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding enzyme, lysine biosynthesis, aminotransferase, S genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.81 E-value=3.6e-19 Score=205.56 Aligned_cols=304 Identities=13% Similarity=0.037 Sum_probs=197.0
Q ss_pred hhHHHHHHHHHHHHHHHhCCC--cc-c-eecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcE
Q 001989 628 QGYQEMFNNLGEWLCTITGFD--SF-S-LQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMK 703 (985)
Q Consensus 628 ~G~~~~~~e~~~~la~l~G~~--~~-~-~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~ 703 (985)
+|..++.+++.+++.+.+|.+ .. . ++.++|++|+..++.++. .++++|+++...|..+...++..|++
T Consensus 62 ~g~~~l~~~la~~~~~~~g~~~~~~~~v~~t~g~~~al~~~~~~~~--------~~gd~Vl~~~~~y~~~~~~~~~~g~~ 133 (411)
T 2o0r_A 62 PGSAPLRRAIAAQRRRHFGVDYDPETEVLVTVGATEAIAAAVLGLV--------EPGSEVLLIEPFYDSYSPVVAMAGAH 133 (411)
T ss_dssp TCCHHHHHHHHHHHHHHHCCCCCTTTSEEEEEHHHHHHHHHHHHHC--------CTTCEEEEEESCCTTHHHHHHHTTCE
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCCCceEEEeCCHHHHHHHHHHHhc--------CCCCEEEEeCCCcHhHHHHHHHcCCE
Confidence 455566666777777777853 33 4 444556666654443331 36789999888888877778889999
Q ss_pred EEEEcCCCC---CCCCHHHHHHHHHhcCCCEEEEEEEcC-CCcccccc--CHHHHHHHHHHcCCEEEEEccccccc-cC-
Q 001989 704 IVSVGTDAK---GNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEE--GIDEICKIIHDNGGQVYMDGANMNAQ-VG- 775 (985)
Q Consensus 704 vv~v~~d~~---g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~--di~eI~~la~~~galliVD~a~~~~~-~~- 775 (985)
++.+|++++ +.+|+++|+++++ +++++|++++| |++|.+.+ ++++|+++|+++|+++++|+++.... .+
T Consensus 134 ~~~v~~~~~~~~~~~d~~~l~~~l~---~~~~~v~l~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~ 210 (411)
T 2o0r_A 134 RVTVPLVPDGRGFALDADALRRAVT---PRTRALIINSPHNPTGAVLSATELAAIAEIAVAANLVVITDEVYEHLVFDHA 210 (411)
T ss_dssp EEEEECEEETTEEECCHHHHHHHCC---TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTC
T ss_pred EEEeeccccccCCCCCHHHHHHhhc---cCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEccccccccCCC
Confidence 999998653 5699999999997 78999999998 57998851 46999999999999999999985321 11
Q ss_pred -CCCC----CccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhh
Q 001989 776 -LTSP----GYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSA 850 (985)
Q Consensus 776 -l~~p----g~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~ 850 (985)
.... +..+.|+++.|+||+|+.| |.++|++++++++.+.+...... .+.+.+ ...+
T Consensus 211 ~~~~~~~~~~~~~~~i~~~s~sK~~~~~----G~r~G~~~~~~~~~~~l~~~~~~------------~~~~~~--~~~~- 271 (411)
T 2o0r_A 211 RHLPLAGFDGMAERTITISSAAKMFNCT----GWKIGWACGPAELIAGVRAAKQY------------LSYVGG--APFQ- 271 (411)
T ss_dssp CCCCGGGSTTTGGGEEEEEEHHHHTTCT----TTCEEEEECCHHHHHHHHHHHHH------------HTSCCC--TTHH-
T ss_pred CCcChhhccCCCCCEEEEeechhhcCCc----cceEEEEeeCHHHHHHHHHHHhh------------ccCCCC--hHHH-
Confidence 0011 1246799999999998532 45599999987765543211000 000111 1111
Q ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHH-
Q 001989 851 LILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLM- 928 (985)
Q Consensus 851 ~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~- 928 (985)
.++.++|.. +.+.+.+..++..++++++.+.|++ ++.+. .+.+..+ +.++++.. .+.+..++.++|.
T Consensus 272 ---~a~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~--~~~~g~~--~~~~~~~~---~~~~~~~~~~~l~~ 340 (411)
T 2o0r_A 272 ---PAVALALDT-EDAWVAALRNSLRARRDRLAAGLTEIGFAVH--DSYGTYF--LCADPRPL---GYDDSTEFCAALPE 340 (411)
T ss_dssp ---HHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHHHHHHTCEEC--CCCBSSE--EEEECGGG---TCCCHHHHHHHHHH
T ss_pred ---HHHHHHHhC-ChHHHHHHHHHHHHHHHHHHHHHHHcCCEec--CCCeeEE--EEEecCCC---CCCCHHHHHHHHHH
Confidence 222334443 3566777777888899999999987 44432 2222222 34555410 0246788999886
Q ss_pred HCCCccCCC-CC-C------------CCCEEEEeccCCCCHHHHHHHHccCChhHHHHhhcc
Q 001989 929 DYGFHGPTM-SW-P------------VPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRLKM 976 (985)
Q Consensus 929 ~~Gi~~~~~-~~-p------------~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~~~ 976 (985)
++||.+... .+ + ..+++||++. ++++||++ +++.|++++++.+.
T Consensus 341 ~~gi~v~~g~~f~~~~~~~~~~~~~~~~~~iRis~~--~~~e~i~~--~~~~l~~~~~~~~~ 398 (411)
T 2o0r_A 341 KVGVAAIPMSAFCDPAAGQASQQADVWNHLVRFTFC--KRDDTLDE--AIRRLSVLAERPAT 398 (411)
T ss_dssp HHSEECEEGGGGSCCC--------CCGGGCEEEECC--SCHHHHHH--HHHHHGGGGC----
T ss_pred hCCEEEcChhhhCCCccccccccccCCCCeEEEEec--CCHHHHHH--HHHHHHHHHhccCc
Confidence 579986431 12 1 2468999986 48999999 77888777665543
|
| >3dr4_A Putative perosamine synthetase; deoxysugar, pyridoxal phosphate, aspartate aminotransferase, O-antigen; HET: G4M; 1.60A {Caulobacter crescentus} PDB: 3dr7_A* 3bn1_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=3.3e-19 Score=204.40 Aligned_cols=301 Identities=12% Similarity=0.070 Sum_probs=192.5
Q ss_pred HHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcCC-CC
Q 001989 634 FNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTD-AK 712 (985)
Q Consensus 634 ~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~d-~~ 712 (985)
..++++.+++++|.+. .+++++|++|++.++.+++ ..++++|+++...|..+...+...|++++.++++ ++
T Consensus 58 ~~~l~~~la~~~~~~~-~i~~~~gt~al~~~l~~~~-------~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 129 (391)
T 3dr4_A 58 IVEFEKAFADYCGVKH-AIACNNGTTALHLALVAMG-------IGPGDEVIVPSLTYIASANSVTYCGATPVLVDNDPRT 129 (391)
T ss_dssp HHHHHHHHHHHHTCSE-EEEESSHHHHHHHHHHHHT-------CCTTCEEEEESSSCTHHHHHHHHTTCEEEEECBCTTT
T ss_pred HHHHHHHHHHHhCCCc-EEEeCCHHHHHHHHHHHcC-------CCCcCEEEECCCchHHHHHHHHHCCCEEEEEecCccc
Confidence 5688899999999874 4566788887765555431 2467899999998888877788899999999998 46
Q ss_pred CCCCHHHHHHHHHhcCCCEEEEEEEcCCCccccccCHHHHHHHHHHcCCEEEEEccccccccCCC-CCCccCCcEEEeC-
Q 001989 713 GNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLT-SPGYIGADVCHLN- 790 (985)
Q Consensus 713 g~iD~e~L~~~i~~~~~~t~~Vvv~~pn~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~-~pg~~g~Di~~~s- 790 (985)
+.+|+++|+++++ +++++|++++ ++|.+. |+++|.++|+++|+++++|++|..+..... ..+.+ .|+.++|
T Consensus 130 ~~~d~~~l~~~~~---~~~~~v~~~n--~tG~~~-~~~~i~~l~~~~~~~li~D~a~~~g~~~~~~~~~~~-~di~~~S~ 202 (391)
T 3dr4_A 130 FNLDAAKLEALIT---PRTKAIMPVH--LYGQIC-DMDPILEVARRHNLLVIEDAAEAVGATYRGKKSGSL-GDCATFSF 202 (391)
T ss_dssp CSBCGGGSGGGCC---TTEEEECCBC--GGGCCC-CHHHHHHHHHHTTCEEEEECTTCTTCEETTEETTSS-SSEEEEEC
T ss_pred cCcCHHHHHHhcC---CCceEEEEEC--CCCChh-hHHHHHHHHHHcCCEEEEECcccccceECCeeeccc-CCEEEEEC
Confidence 8899999999987 7899888654 679988 899999999999999999999864322111 11222 3666666
Q ss_pred -CcccccccCCCCCCceEEEEEccc-ccCcCCCC-ccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHH
Q 001989 791 -LHKTFCIPHGGGGPGMGPIGVKKH-LAPFLPSH-PVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKG 867 (985)
Q Consensus 791 -~hK~l~~p~g~GGPg~G~i~~~~~-l~~~lp~~-~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eG 867 (985)
.||+++ |+.+|+++++++ +.+.+... ..|.+.+. .+.......+.. .....+ +.. ....++
T Consensus 203 s~~K~l~------~g~gg~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~g~~~~----~~~l~a--a~~---~~~~~~ 266 (391)
T 3dr4_A 203 FGNAIIT------TGEGGMITTNDDDLAAKMRLLRGQGMDPNR-RYWFPIVGFNYR----MTNIQA--AIG---LAQLER 266 (391)
T ss_dssp BTTSSSC------CBSCEEEEESCHHHHHHHHHHHBTTCCTTS-TTCCSSCCCBCB----CCHHHH--HHH---HHHHHT
T ss_pred CCCCcCC------cCCeEEEEECCHHHHHHHHHHHhcCCCCCC-cccccccccccC----CCHHHH--HHH---HHHHHH
Confidence 668873 234677776643 43222100 00111000 000000000111 111211 111 222345
Q ss_pred HHHHHHHHHHHHHHHHHHhhc-cCCeeec--CC-CCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCCCC---
Q 001989 868 LTEASKIAILNANYMAKRLEK-HYPILFR--GV-NGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWP--- 940 (985)
Q Consensus 868 l~~~~~~~~~~a~~l~~~L~~-g~~l~~~--~~-~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~~p--- 940 (985)
+.+..++..++++++.+.|++ ++.+... .. ....++.+.+.++. ..+.+..++.+.|.++||.+.....|
T Consensus 267 ~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~i~~~~---~~~~~~~~l~~~L~~~GI~v~~~~~p~~~ 343 (391)
T 3dr4_A 267 VDEHLAARERVVGWYEQKLARLGNRVTKPHVALTGRHVFWMYTVRLGE---GLSTTRDQVIKDLDALGIESRPVFHPMHI 343 (391)
T ss_dssp HHHHHHHHHHHHHHHHHHHGGGTTSEECCCCCTTSCCCCSSEEEEECS---SCSSCHHHHHHHHHHTTCCCEECCCCGGG
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCccccCcCCCCCCcceeEEEEEEECC---ccchhHHHHHHHHHHCCCceeecCCcccc
Confidence 666777788889999999987 4544322 11 11222234455431 11467899999999999987532111
Q ss_pred ------------------CCCEEEEeccCCCCHHHHHHHHccCChhHH
Q 001989 941 ------------------VPGTLMIEPTESESKSWTGIVMLSSPSEKK 970 (985)
Q Consensus 941 ------------------~~~~lris~t~~~t~eeId~~~~~~~l~~~ 970 (985)
....+|++++..+|+||||+ ++++|+++
T Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~t~edi~~--~~~~l~~~ 389 (391)
T 3dr4_A 344 MPPYAHLATDDLKIAEACGVDGLNLPTHAGLTEADIDR--VIAALDQV 389 (391)
T ss_dssp SGGGGGGCCTTCHHHHHHHHHEEEECCCTTCCHHHHHH--HHHHHHTT
T ss_pred ChhhhhcCcCCChHHHHHHhCeEEccCCCCCCHHHHHH--HHHHHHHH
Confidence 13579999999999999999 66766654
|
| >1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP; 2.35A {Escherichia coli} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.81 E-value=7.2e-19 Score=201.12 Aligned_cols=296 Identities=10% Similarity=0.074 Sum_probs=194.8
Q ss_pred hhHHHHHHHHHHHHHHHhCCC--cc-c-eecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcE
Q 001989 628 QGYQEMFNNLGEWLCTITGFD--SF-S-LQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMK 703 (985)
Q Consensus 628 ~G~~~~~~e~~~~la~l~G~~--~~-~-~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~ 703 (985)
+|..++.+++.+++.+.+|.+ .. . ++.++|++++..++.++. .++++|+++++.|..+...++..|++
T Consensus 67 ~g~~~l~~~la~~l~~~~g~~~~~~~~v~~~~g~~~a~~~~~~~~~--------~~gd~vl~~~p~~~~~~~~~~~~g~~ 138 (386)
T 1u08_A 67 TGVQALREAIAQKTERLYGYQPDADSDITVTAGATEALYAAITALV--------RNGDEVICFDPSYDSYAPAIALSGGI 138 (386)
T ss_dssp TCCHHHHHHHHHHHHHHHSCCCCTTTTEEEESSHHHHHHHHHHHHC--------CTTCEEEEEESCCTTHHHHHHHTTCE
T ss_pred CCCHHHHHHHHHHHHHHhCCCCCCCCCEEEcCChHHHHHHHHHHhC--------CCCCEEEEeCCCchhHHHHHHHcCCE
Confidence 455566666777777777853 33 3 455666666654444331 36789999888888887778889999
Q ss_pred EEEEcCCC-CCCCCHHHHHHHHHhcCCCEEEEEEEcCC-Ccccccc--CHHHHHHHHHHcCCEEEEEcccccc-ccCC--
Q 001989 704 IVSVGTDA-KGNINIEELRKAAEANRDNLSTLMVTYPS-THGVYEE--GIDEICKIIHDNGGQVYMDGANMNA-QVGL-- 776 (985)
Q Consensus 704 vv~v~~d~-~g~iD~e~L~~~i~~~~~~t~~Vvv~~pn-~~G~i~~--di~eI~~la~~~galliVD~a~~~~-~~~l-- 776 (985)
++.+|+++ ++.+|+++|+++++ +++++|++++|+ ++|.+.+ ++++|.++|+++|+++++|+++... ..+-
T Consensus 139 ~~~v~~~~~~~~~d~~~l~~~l~---~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~ 215 (386)
T 1u08_A 139 VKRMALQPPHFRVDWQEFAALLS---ERTRLVILNTPHNPSATVWQQADFAALWQAIAGHEIFVISDEVYEHINFSQQGH 215 (386)
T ss_dssp EEEEECCTTTCCCCHHHHHHHCC---TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHTTSCCEEEEECTTTTCBCCSSCC
T ss_pred EEEeecCcccCcCCHHHHHHhhc---ccCEEEEEeCCCCCCCccCCHHHHHHHHHHHHHcCcEEEEEccccccccCCCCC
Confidence 99999876 47899999999997 789999999984 6898862 4799999999999999999998531 1110
Q ss_pred CCC----CccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHH
Q 001989 777 TSP----GYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALI 852 (985)
Q Consensus 777 ~~p----g~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~ 852 (985)
... +..+.|+++.|+||+|+.| |.++|++++++++.+.+...... .+.+. +...
T Consensus 216 ~~~~~~~~~~~~~i~~~s~sK~~~~~----G~r~G~~~~~~~~~~~l~~~~~~------------~~~~~------~~~~ 273 (386)
T 1u08_A 216 ASVLAHPQLRERAVAVSSFGKTYHMT----GWKVGYCVAPAPISAEIRKVHQY------------LTFSV------NTPA 273 (386)
T ss_dssp CCGGGSHHHHTTEEEEEEHHHHTTCG----GGCCEEEECCHHHHHHHHHHHHH------------HTSSC------CHHH
T ss_pred cChhcccCccCcEEEEecchhhcCCc----ccceEEEEcCHHHHHHHHHHHHh------------hccCC------ChHH
Confidence 011 1346899999999998532 45589999987765543211000 00011 1112
Q ss_pred HHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHH-HC
Q 001989 853 LPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLM-DY 930 (985)
Q Consensus 853 ~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~-~~ 930 (985)
..++.++|... .+.+++..++..++++++.+.|++ ++.+. .+.+..+ +.++++.. .+.+..++.++|. ++
T Consensus 274 ~~a~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~--~~~~g~~--~~~~~~~~---~~~~~~~~~~~l~~~~ 345 (386)
T 1u08_A 274 QLALADMLRAE-PEHYLALPDFYRQKRDILVNALNESRLEIL--PCEGTYF--LLVDYSAV---STLDDVEFCQWLTQEH 345 (386)
T ss_dssp HHHHHHHHHHC-THHHHTHHHHHHHHHHHHHHHTTSSSCEEC--CCCBSSE--EEEECTTT---CCSCHHHHHHHHHHHS
T ss_pred HHHHHHHHhCC-cHHHHHHHHHHHHHHHHHHHHHHHCCCeec--CCCceEE--EEEecCCC---CCCCHHHHHHHHHHhC
Confidence 22233444432 456677777788899999999987 44332 2222222 34555410 0146788999886 68
Q ss_pred CCccCCC-CCC----CCCEEEEeccCCCCHHHHHHHHccCChh
Q 001989 931 GFHGPTM-SWP----VPGTLMIEPTESESKSWTGIVMLSSPSE 968 (985)
Q Consensus 931 Gi~~~~~-~~p----~~~~lris~t~~~t~eeId~~~~~~~l~ 968 (985)
||.+... .+. .++.+||+++ ++++||++ +++.|+
T Consensus 346 gi~v~~g~~f~~~~~~~~~iRis~~--~~~~~i~~--~~~~l~ 384 (386)
T 1u08_A 346 GVAAIPLSVFCADPFPHKLIRLCFA--KKESTLLA--AAERLR 384 (386)
T ss_dssp CEECEEGGGGCSSCCCSCEEEEECC--SCHHHHHH--HHHHHT
T ss_pred CEEEeCchHhCCCCCCCCEEEEEEc--CCHHHHHH--HHHHHh
Confidence 9987532 121 2478999997 48999999 545443
|
| >2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens} SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A* 2can_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=4.6e-18 Score=198.43 Aligned_cols=291 Identities=12% Similarity=0.122 Sum_probs=192.0
Q ss_pred HHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHH-hcCCCCC-CEEEEc-CCCCcccHHHHHHCC---------
Q 001989 634 FNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHK-ARGDHHR-NVCIIP-VSAHGTNPATAAMCG--------- 701 (985)
Q Consensus 634 ~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~-~~g~~~~-~~IIv~-~~~Hg~~~~~a~~~G--------- 701 (985)
..++++.+++++|.+. .++.+||++|+++++.+++.|.. .+|..++ ++||+. ..+|+.........|
T Consensus 120 ~~~l~~~la~~~g~~~-v~~~~sGseA~~~al~~~~~~~~~~~g~~~g~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~ 198 (439)
T 2oat_A 120 LGEYEEYITKLFNYHK-VLPMNTGVEAGETACKLARKWGYTVKGIQKYKAKIVFAAGNFWGRTLSAISSSTDPTSYDGFG 198 (439)
T ss_dssp HHHHHHHHHHHHTCSE-EEEESSHHHHHHHHHHHHHHHHHHTTCCCTTCCEEEEETTCCCCSSHHHHTTCCCHHHHTTSC
T ss_pred HHHHHHHHHHhcCCCE-EEEeCCHHHHHHHHHHHHHHHhhhccCCCCCCCeEEEEcCCCCCCCHhHhhcCCChhcccCCC
Confidence 4578889999998654 46678899999888887775532 1222233 678775 477887766555444
Q ss_pred ---cEEEEEcCCCCCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccc---cCHHHHHHHHHHcCCEEEEEcccccccc
Q 001989 702 ---MKIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYE---EGIDEICKIIHDNGGQVYMDGANMNAQV 774 (985)
Q Consensus 702 ---~~vv~v~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~---~di~eI~~la~~~galliVD~a~~~~~~ 774 (985)
.+++.+|.+ |+++|+++++ ++++++|+++.. +.+|++. .++++|.++|+++|+++|+|++|. +++
T Consensus 199 p~~~~v~~~~~~-----d~~~le~~l~--~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~-g~g 270 (439)
T 2oat_A 199 PFMPGFDIIPYN-----DLPALERALQ--DPNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQT-GLA 270 (439)
T ss_dssp SCCTTEEEECSS-----CHHHHHHHTT--STTEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTT-TTT
T ss_pred CCCCCeEEeCCC-----CHHHHHHHhC--CCCEEEEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecccc-CCc
Confidence 467777763 8999999994 267887776543 3478653 169999999999999999999983 332
Q ss_pred CCCCC---C--ccCCcEEEeCCcccccccCCCCC-CceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchh
Q 001989 775 GLTSP---G--YIGADVCHLNLHKTFCIPHGGGG-PGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWG 848 (985)
Q Consensus 775 ~l~~p---g--~~g~Di~~~s~hK~l~~p~g~GG-Pg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g 848 (985)
-.... . ...+|++++ +|+|+ || ..+|++++++++.+.+.....+ +++.+
T Consensus 271 ~~g~~~~~~~~~~~~Di~t~--sK~l~-----~G~~~~G~v~~~~~~~~~l~~~~~~------------------~t~~~ 325 (439)
T 2oat_A 271 RTGRWLAVDYENVRPDIVLL--GKALS-----GGLYPVSAVLCDDDIMLTIKPGEHG------------------STYGG 325 (439)
T ss_dssp TTSSSSGGGGGTCCCSEEEE--CGGGG-----TTSSCCEEEEECHHHHTTSCTTSSC------------------CSSTT
T ss_pred cCCcchhHHHhCCCCcEEEe--ccccc-----CCCCCeEEEEECHHHHhccCCCCcc------------------cCCCc
Confidence 11111 1 124698754 59874 34 4588999998876655321000 01223
Q ss_pred hhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCee--ecCCCCceeeEEEEEecCccccCCCCHHHHHH
Q 001989 849 SALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPIL--FRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAK 925 (985)
Q Consensus 849 ~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~--~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~ 925 (985)
++..++++.+.+..+..++ ..++..++++++.++|++ ++++. ..+ .+.+ +.+.++. ..+.+..++.+
T Consensus 326 ~~~~~aaa~aal~~~~~~~---~~~~~~~~~~~l~~~L~~l~~~~~~~~~~-~g~~---~~v~l~~---~~~~~~~~l~~ 395 (439)
T 2oat_A 326 NPLGCRVAIAALEVLEEEN---LAENADKLGIILRNELMKLPSDVVTAVRG-KGLL---NAIVIKE---TKDWDAWKVCL 395 (439)
T ss_dssp CHHHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHHHHTTSCTTTEEEEEE-ETTE---EEEEECC---CSSCCHHHHHH
T ss_pred CHHHHHHHHHHHHHHhhhh---HHHHHHHHHHHHHHHHHHhcCCCcEEEEe-eeeE---EEEEEec---CccHHHHHHHH
Confidence 4455555666777665543 345677888999999987 34331 111 1222 3345431 00135788999
Q ss_pred HHHHCCCccCCCCCCCCCEEEEeccCCCCHHHHHHHHccCChhHHHHh
Q 001989 926 RLMDYGFHGPTMSWPVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHR 973 (985)
Q Consensus 926 ~L~~~Gi~~~~~~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~ 973 (985)
+|.++|+.+.... .+.+|++++..+|++|||+ ++++|++++++
T Consensus 396 ~l~~~Gv~v~~~~---~~~iRi~~~~~~t~e~i~~--~l~~l~~~l~~ 438 (439)
T 2oat_A 396 RLRDNGLLAKPTH---GDIIRFAPPLVIKEDELRE--SIEIINKTILS 438 (439)
T ss_dssp HHHHTTEECCBSS---SSEEEECCCTTCCHHHHHH--HHHHHHHHHHT
T ss_pred HHHHCCeEEecCC---CCEEEEECccCCCHHHHHH--HHHHHHHHHHh
Confidence 9999999886432 4799999999999999999 77888887754
|
| >1c4k_A Protein (ornithine decarboxylase); lyase; HET: PLP GTP; 2.70A {Lactobacillus SP} SCOP: c.23.1.4 c.67.1.5 d.125.1.1 PDB: 1ord_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=7.1e-19 Score=215.55 Aligned_cols=315 Identities=14% Similarity=0.093 Sum_probs=200.6
Q ss_pred HHHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHH-HHHCCcEEEEEcCCC
Q 001989 633 MFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPAT-AAMCGMKIVSVGTDA 711 (985)
Q Consensus 633 ~~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~-a~~~G~~vv~v~~d~ 711 (985)
.+.++++.+|+++|.+...++.+++++++.++++++. .+||+||++...|.++... +.+.|++++.++.+.
T Consensus 174 ~i~e~e~~lA~~~gae~~i~v~nGtt~an~~ai~al~--------~pGD~VLv~~~~H~S~~~~~~~l~Ga~~v~v~~~~ 245 (730)
T 1c4k_A 174 PAVAAEKHAARVYNADKTYFVLGGSSNANNTVTSALV--------SNGDLVLFDRNNHKSVYNSALAMAGGRPVYLQTNR 245 (730)
T ss_dssp HHHHHHHHHHHHTTCSEEEEESSHHHHHHHHHHHHHC--------CTTCEEEEETTCCHHHHHHHTTTTCCEEEEECEEE
T ss_pred HHHHHHHHHHHHHCCCcEEEECCHHHHHHHHHHHHhc--------CCCCEEEEcCCchHHHHHHHHHHCCCEEEEEeCCc
Confidence 3678999999999998765555555566655555432 4789999999989877766 778899999887643
Q ss_pred C-----CCCCHHHH-----HHHHHhcCCC---E----EEEEEEcCCCccccccCHHHHHHHHHHcCCEEEEEcccccc--
Q 001989 712 K-----GNINIEEL-----RKAAEANRDN---L----STLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNA-- 772 (985)
Q Consensus 712 ~-----g~iD~e~L-----~~~i~~~~~~---t----~~Vvv~~pn~~G~i~~di~eI~~la~~~galliVD~a~~~~-- 772 (985)
+ |.+|+++| +++|++..++ + ++|++++||++|.+. |+++|+++||++|++++||+||...
T Consensus 246 ~~~~i~g~id~e~L~~~~le~~i~~~~~~~~~t~~~vklviv~~pn~~G~v~-dl~~I~~la~~~g~~livDeAh~~~~~ 324 (730)
T 1c4k_A 246 NPYGFIGGIYDSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQLGTYDGTIY-NAHEVVKRIGHLCDYIEFDSAWVGYEQ 324 (730)
T ss_dssp CTTCCEEEECGGGSCHHHHHHHTTTSSHHHHTCSCCBSEEEEESBCTTSEEE-CHHHHHHHHGGGBSEEEEECTTCCGGG
T ss_pred cccCccCCCCHHHHhhhHHHHHhhcCCcccccccCCCeEEEEECCCCCCeec-CHHHHHHHHHHcCCeEEEEcccccccc
Confidence 2 34788888 8888732011 4 889999999999998 8999999999999999999998532
Q ss_pred ccCC---CCCC---ccCCc----EEEeCCcccccccCCCCCC-ceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCC
Q 001989 773 QVGL---TSPG---YIGAD----VCHLNLHKTFCIPHGGGGP-GMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGT 841 (985)
Q Consensus 773 ~~~l---~~pg---~~g~D----i~~~s~hK~l~~p~g~GGP-g~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~ 841 (985)
.++. ..+. .+|+| +++.|+||+| +|| ++|+++++++.... +...+... ..+.......+.
T Consensus 325 f~~~~~g~~~l~~~~~g~D~~~~iv~~S~hK~L------~g~~~gg~I~v~~~~l~g-~~~~i~~~--~~~~~~~~~~st 395 (730)
T 1c4k_A 325 FIPMMRNSSPLLIDDLGPEDPGIIVVQSVHKQQ------AGFSQTSQIHKKDSHIKG-QLRYCDHK--HFNNSFNLFMST 395 (730)
T ss_dssp SSGGGGGGCTTSCCCCCTTSCEEEEEECHHHHS------SCCTTCEEEEEECGGGTT-STTCCCHH--HHHHHHHHHSCS
T ss_pred cCcccCCcCcccccccCCCCCCEEEEECCCCCC------CCCCCEEEEEecchhhcC-cccccCHH--HHHHHHHHhCCC
Confidence 1110 0122 34788 9999999997 355 56788777654311 00111000 000000000001
Q ss_pred CCCcchhhhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc---cCCeeecCC---------------------
Q 001989 842 IAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK---HYPILFRGV--------------------- 897 (985)
Q Consensus 842 i~s~~~g~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~---g~~l~~~~~--------------------- 897 (985)
.. + +....++. +++..+..++-.+..++..+++++++++|++ ++.+..+..
T Consensus 396 sp-~-~~~iaal~---aA~~~l~~~~g~~~~~~~~~~a~~lr~~L~~~i~g~~v~~p~~~~~~~~~~~~~~~~~~~~~~~ 470 (730)
T 1c4k_A 396 SP-F-YPMYAALD---VNAAMQEGEAGRKLWHDLLITTIEARKKLIKAGSMFRPFVPPVVNGKKWEDGDTEDMANNIDYW 470 (730)
T ss_dssp SC-C-HHHHHHHH---HHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHTTCSSEESSCSEETTEEGGGSCHHHHTTCGGGG
T ss_pred CC-c-HHHHHHHH---HHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhCCCeEEccccccccccccccccccccccchhh
Confidence 11 1 11111122 2334444432345567788899999999976 333311100
Q ss_pred ---------------CCcee-eE--EEEEecCcc------ccCCCCHHHHHHHHHHCCCccCCCCCCCCCEEEEeccCCC
Q 001989 898 ---------------NGTVA-HE--FIVDLRGLK------NTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESE 953 (985)
Q Consensus 898 ---------------~~~~~-~~--~iv~~~~~~------~~~g~~~~~v~~~L~~~Gi~~~~~~~p~~~~lris~t~~~ 953 (985)
.+..+ .. +.+..+++. ...|+++.++.+.|.++||.+.... .+.+|++++..+
T Consensus 471 ~~~~~~~~~g~~~~~~~~~~idp~kv~i~~pg~~~~~g~~~~~g~~~~~l~~~L~e~GI~v~~~~---~~~ir~~~s~g~ 547 (730)
T 1c4k_A 471 RFEKGAKWHAYEGYGDNQYYVDPNKFMLTTPGINPETGDYEDFGVPATIVANYLRDHGIIPEKSD---LNSILFLMTPAE 547 (730)
T ss_dssp BCCTTCTTTCCTTCCTTCEEECTTEEEEECSSEETTTTEECSSCCCHHHHHHHHHHTTCCCSEEC---SSEEEEECCTTC
T ss_pred ccCccchhccccccCCcccccCCeEEEEEeCCcccccccccccCCCHHHHHHHHHHCCcEEEECC---CCeEEEEeCCCC
Confidence 00000 00 345443110 1236788999999999999886443 378999999999
Q ss_pred CHHHHHHHHccCChhHHHHhhc
Q 001989 954 SKSWTGIVMLSSPSEKKLHRLK 975 (985)
Q Consensus 954 t~eeId~~~~~~~l~~~~~~~~ 975 (985)
|++|+++ ++++|+++.+.+.
T Consensus 548 t~e~i~~--Ll~aL~~i~~~~~ 567 (730)
T 1c4k_A 548 TPAKMNN--LITQLLQLQRLIE 567 (730)
T ss_dssp CHHHHHH--HHHHHHHHHHHHH
T ss_pred CHHHHHH--HHHHHHHHHHhcc
Confidence 9999999 7788888876654
|
| >3hmu_A Aminotransferase, class III; structural genomics, pyridoxal phosphate, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi} | Back alignment and structure |
|---|
Probab=99.80 E-value=2.9e-18 Score=201.95 Aligned_cols=302 Identities=15% Similarity=0.185 Sum_probs=195.3
Q ss_pred HHHHHHHHHHHHhCCCc-cceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEE-cCCCCcccHHHHHHCCc--------
Q 001989 633 MFNNLGEWLCTITGFDS-FSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCII-PVSAHGTNPATAAMCGM-------- 702 (985)
Q Consensus 633 ~~~e~~~~la~l~G~~~-~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv-~~~~Hg~~~~~a~~~G~-------- 702 (985)
...++++.++++++.+. ..++.+||++|+++++++++.|...+|..++++||+ ...+||.........|.
T Consensus 100 ~~~~lae~l~~~~~~~~~~v~~~~sGseA~~~aik~a~~~~~~~g~~~~~~ii~~~~~yHg~t~~~~~~~~~~~~~~~~~ 179 (472)
T 3hmu_A 100 PAIALAQKLAELAPGDLNHVFFAGGGSEANDTNIRMVRTYWQNKGQPEKTVIISRKNAYHGSTVASSALGGMAGMHAQSG 179 (472)
T ss_dssp HHHHHHHHHHHHSCTTEEEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCHHHHHTTC
T ss_pred HHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCcCCCccHHhhhccCChhhccccC
Confidence 45678899999987544 346778999999999999988766666445677776 56788877655443321
Q ss_pred ---EEEEEcCCC-----CCCCC--------HHHHHHHHHhcC-CCEEEEEEEcCC-CccccccC----HHHHHHHHHHcC
Q 001989 703 ---KIVSVGTDA-----KGNIN--------IEELRKAAEANR-DNLSTLMVTYPS-THGVYEEG----IDEICKIIHDNG 760 (985)
Q Consensus 703 ---~vv~v~~d~-----~g~iD--------~e~L~~~i~~~~-~~t~~Vvv~~pn-~~G~i~~d----i~eI~~la~~~g 760 (985)
.++.++... ++ .| +++|+++|++.. +++++|+++.++ ..|++. + +++|.++|+++|
T Consensus 180 ~~~~~~~v~~p~~~~~~~~-~~~~~~~~~~~~~le~~i~~~~~~~~aavi~epv~~~gG~~~-~~~~~l~~l~~l~~~~g 257 (472)
T 3hmu_A 180 LIPDVHHINQPNWWAEGGD-MDPEEFGLARARELEEAILELGENRVAAFIAEPVQGAGGVIV-APDSYWPEIQRICDKYD 257 (472)
T ss_dssp CCSSEEEECCCCHHHHCTT-CCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBSTTTCBC-CCTTHHHHHHHHHHHTT
T ss_pred CCCCcEEeCCCccccCCcc-cCHHHHHHHHHHHHHHHHHhcCCCCEEEEEEcCccCCCCccc-CCHHHHHHHHHHHHHcC
Confidence 344555422 11 34 889999987433 467777776554 567765 5 999999999999
Q ss_pred CEEEEEccccccccCCCCCCcc--------CCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCC
Q 001989 761 GQVYMDGANMNAQVGLTSPGYI--------GADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPA 832 (985)
Q Consensus 761 alliVD~a~~~~~~~l~~pg~~--------g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~ 832 (985)
++||+|+++. ++.+.|.+ .+|+++++ |++ ++||..+|++++++++.+.+....+.
T Consensus 258 illI~DEv~~----gfgr~G~~~a~~~~~v~pdi~t~s--K~l----~gg~~plG~v~~~~~i~~~~~~~~~~------- 320 (472)
T 3hmu_A 258 ILLIADEVIC----GFGRTGNWFGTQTMGIRPHIMTIA--KGL----SSGYAPIGGSIVCDEVAHVIGKDEFN------- 320 (472)
T ss_dssp CEEEEECTTT----TTTTTSSSCHHHHHTCCCSEEEEC--GGG----TTTSSCCEEEEEEHHHHHHHTTSCBC-------
T ss_pred CEEEEEcccc----CCcccCccchhHHhCCCCceeeec--hhh----hcCCcceEEEEECHHHHHhcccCCcc-------
Confidence 9999999873 23333322 36888764 876 34557788898888776655211100
Q ss_pred CCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHHHHHHHHHHH-HHHHHHHHHhhcc--CCee--ecCCCCceeeEEEE
Q 001989 833 PEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAI-LNANYMAKRLEKH--YPIL--FRGVNGTVAHEFIV 907 (985)
Q Consensus 833 ~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl~~~~~~~~-~~a~~l~~~L~~g--~~l~--~~~~~~~~~~~~iv 907 (985)
..+++.+++++++++.+.|..+..+.+ .++.. ++.++++++|++. +..+ +.+ .+. + +.+
T Consensus 321 ---------~~~t~~~np~a~aAa~aaL~~~~~~~~---~~~~~~~~~~~l~~~L~~l~~~~~v~~vr~-~G~-~--~~i 384 (472)
T 3hmu_A 321 ---------HGYTYSGHPVAAAVALENLRILEEENI---LDHVRNVAAPYLKEKWEALTDHPLVGEAKI-VGM-M--ASI 384 (472)
T ss_dssp ---------CCCTTTTCHHHHHHHHHHHHHHHHTTH---HHHHHHTHHHHHHHHHHGGGGSTTEEEEEE-ETT-E--EEE
T ss_pred ---------ccCCCCCCHHHHHHHHHHHHHHHHhHH---HHHHHHHHHHHHHHHHHHHhcCCCeEEEEe-cCc-e--EEE
Confidence 001223355666667777776655443 44566 6778888888652 2211 111 112 1 223
Q ss_pred EecCcccc-C------CCCHHHHHHHHHHCCCccCCCCCCCCCEEEEeccCCCCHHHHHHHHccCChhHHHHhhc
Q 001989 908 DLRGLKNT-A------GIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRLK 975 (985)
Q Consensus 908 ~~~~~~~~-~------g~~~~~v~~~L~~~Gi~~~~~~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~~ 975 (985)
.+..-... . .....++.+.|.++|+.+.... +.+||+|+..+|++|||+ ++++|+++++++.
T Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~g----~~iRi~p~~~~t~e~i~~--~l~~l~~~l~~~~ 453 (472)
T 3hmu_A 385 ALTPNKASRAKFASEPGTIGYICRERCFANNLIMRHVG----DRMIISPPLVITPAEIDE--MFVRIRKSLDEAQ 453 (472)
T ss_dssp EECSCGGGTCCBSSCTTHHHHHHHHHHHHTTBCCEEET----TEEEECCCTTCCHHHHHH--HHHHHHHHHHHHH
T ss_pred EEecCccccccccchhHHHHHHHHHHHHHCCcEEEecC----CEEEEECCCCCCHHHHHH--HHHHHHHHHHHHH
Confidence 33210000 0 0015678999999999876442 799999999999999999 7788888876643
|
| >1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB: 1yiy_A* 2r5c_A* 2r5e_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=6.8e-19 Score=204.39 Aligned_cols=304 Identities=12% Similarity=0.034 Sum_probs=197.6
Q ss_pred hhHHHHHHHHHHHHHHHhCC--Ccc-c-eecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcE
Q 001989 628 QGYQEMFNNLGEWLCTITGF--DSF-S-LQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMK 703 (985)
Q Consensus 628 ~G~~~~~~e~~~~la~l~G~--~~~-~-~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~ 703 (985)
+|..++.+++.+++.+.+|. +.. . ++.++|++|+..++.++. .++++|+++.+.|..+...++..|++
T Consensus 77 ~g~~~l~~~la~~l~~~~g~~~~~~~~v~~~~g~~~a~~~~~~~~~--------~~gd~Vl~~~p~y~~~~~~~~~~g~~ 148 (429)
T 1yiz_A 77 FGHPRLVQALSKLYSQLVDRTINPMTEVLVTVGAYEALYATIQGHV--------DEGDEVIIIEPFFDCYEPMVKAAGGI 148 (429)
T ss_dssp SCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHHHHHHHHHC--------CTTCEEEEEESCCTTHHHHHHHTTCE
T ss_pred CCcHHHHHHHHHHHHHHhCCCCCCcCCEEEecChHHHHHHHHHHhc--------CCCCEEEEcCCCchhHHHHHHHcCCE
Confidence 45556666667777776784 333 4 445666666654444331 36789999888777777778889999
Q ss_pred EEEEcCCC----------CCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCcccccc--CHHHHHHHHHHcCCEEEEEcccc
Q 001989 704 IVSVGTDA----------KGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEE--GIDEICKIIHDNGGQVYMDGANM 770 (985)
Q Consensus 704 vv~v~~d~----------~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~--di~eI~~la~~~galliVD~a~~ 770 (985)
++.+|.++ ++.+|+++|+++++ +++++|++++| |++|.+.+ ++++|.++|+++|+++|+|+++.
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~---~~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~ 225 (429)
T 1yiz_A 149 PRFIPLKPNKTGGTISSADWVLDNNELEALFN---EKTKMIIINTPHNPLGKVMDRAELEVVANLCKKWNVLCVSDEVYE 225 (429)
T ss_dssp EEEEECBCCCSSSSEEGGGCBCCHHHHHHHCC---TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTT
T ss_pred EEEEeCCcccccccccccCcccCHHHHHHHhc---cCceEEEECCCCCCCCccCCHHHHHHHHHHHHHcCcEEEEecccc
Confidence 99999865 35799999999997 78999999998 46898862 49999999999999999999985
Q ss_pred cc-ccC-----CC-CCCccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCC
Q 001989 771 NA-QVG-----LT-SPGYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIA 843 (985)
Q Consensus 771 ~~-~~~-----l~-~pg~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~ 843 (985)
.. ..+ +. .++..+.|+++.|+||+|+.| |.++|++++++++.+.+.... . ..+.+.
T Consensus 226 ~~~~~g~~~~~~~~~~~~~~~~~~~~s~sK~~~~~----G~r~G~~~~~~~~~~~l~~~~-~-----------~~~~~~- 288 (429)
T 1yiz_A 226 HMVFEPFEHIRICTLPGMWERTITIGSAGKTFSLT----GWKIGWAYGPEALLKNLQMVH-Q-----------NCVYTC- 288 (429)
T ss_dssp TCBCTTSCCCCGGGSTTTGGGEEEEEEHHHHHTCG----GGCCEEEESCHHHHHHHHHHH-H-----------TTTCCC-
T ss_pred ccccCCCCCcChhhccCCcCceEEEecchhccCCC----CcceEEEEeCHHHHHHHHHHH-h-----------hcccCC-
Confidence 21 111 10 112456899999999998532 445899999877655432100 0 001111
Q ss_pred CcchhhhHHHHHHHHHHHHh----c--HHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccc--
Q 001989 844 AAPWGSALILPISYTYIAMM----G--SKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKN-- 914 (985)
Q Consensus 844 s~~~g~~~~~~~a~a~l~~l----g--~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~-- 914 (985)
+.....++.++|... + .+.+.+..++..++++++.+.|++ ++.+. .+.+..+ +.++++....
T Consensus 289 -----~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~--~~~~g~~--~~~~~~~~~~~~ 359 (429)
T 1yiz_A 289 -----ATPIQEAIAVGFETELKRLKSPECYFNSISGELMAKRDYMASFLAEVGMNPT--VPQGGYF--MVADWSSLDSKV 359 (429)
T ss_dssp -----CHHHHHHHHHHHHHHHTTTTSTTSHHHHHHHHHHHHHHHHHHHHHHHTCEEE--ECSBSSE--EEEECCSSCTTT
T ss_pred -----ChHHHHHHHHHHhcccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCccc--CCCcceE--EEEEcccccccc
Confidence 112222334445541 3 345666667778888999999987 44432 2222222 3455542100
Q ss_pred -----cCCCCHHHHHHHHH-HCCCccCCC-CCC-------CCCEEEEeccCCCCHHHHHHHHccCChhHHHH
Q 001989 915 -----TAGIEPEDVAKRLM-DYGFHGPTM-SWP-------VPGTLMIEPTESESKSWTGIVMLSSPSEKKLH 972 (985)
Q Consensus 915 -----~~g~~~~~v~~~L~-~~Gi~~~~~-~~p-------~~~~lris~t~~~t~eeId~~~~~~~l~~~~~ 972 (985)
....+..+++++|. ++||.+... .+. ..+++||++. ++++||++ +++.|+++++
T Consensus 360 ~~~~~~~~~~~~~l~~~l~~~~gv~v~~g~~f~~~~~~~~~~~~iRis~~--~~~e~i~~--~l~~l~~~l~ 427 (429)
T 1yiz_A 360 DLTQETDARKDYRFTKWMTKSVGLQGIPPSAFYSEPNKHLGEDFVRYCFF--KKDENLQK--AAEILRKWKG 427 (429)
T ss_dssp TCCSSSSSCHHHHHHHHHHHHTSEECBCGGGGSCGGGGGGTTTEEEEECC--SCHHHHHH--HHHHHHHHSC
T ss_pred cccccccCCCHHHHHHHHHHhCCEEEeCchHhCCCcccCCCCCeEEEEec--CCHHHHHH--HHHHHHHhcc
Confidence 00034678888886 789987542 221 1479999998 48999999 7777776653
|
| >1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.80 E-value=6.4e-18 Score=193.48 Aligned_cols=313 Identities=14% Similarity=0.102 Sum_probs=213.6
Q ss_pred CCCcHHHHHHHHhCCccccccCCChhhHhhhHHHHHHHHHHHHHHhcCCCCc-ceeeccchHHHHHHHHHHhhhhcCCCC
Q 001989 178 THVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMS-NASLLDEGTAAAEAMAMCNNIQKGKKK 256 (985)
Q Consensus 178 ~~~p~~v~~~i~~~~~~~t~~~pyq~e~sqg~l~~i~e~q~~ia~L~g~~~~-~~sl~~~~ta~~ea~~~a~~~~~~~g~ 256 (985)
...|+.+.+++.+. ... .|.+. ..+...++++.+++++|.++. ++.+++|+|.++++++.++ . ++||
T Consensus 43 ~~~~~~v~~a~~~~---~~~--~~~~~----~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~al~~~~~~~-~--~~gd 110 (393)
T 1vjo_A 43 SNAHPSVLQAMNVS---PVG--HLDPA----FLALMDEIQSLLRYVWQTENPLTIAVSGTGTAAMEATIANA-V--EPGD 110 (393)
T ss_dssp CCCCHHHHHHHSSC---CCC--TTSHH----HHHHHHHHHHHHHHHHTCCCSCEEEESSCHHHHHHHHHHHH-C--CTTC
T ss_pred CCCCHHHHHHHhcc---ccc--ccCHH----HHHHHHHHHHHHHHHhCCCCCcEEEEeCchHHHHHHHHHhc-c--CCCC
Confidence 35677776554432 111 23222 346677888999999999877 8999999998888777665 2 3789
Q ss_pred EEEEcCCCChh--HHHHHHHhhcCCCeEEEEeCc--------hhhhc-cCC-CEeEEEEEcC-CCCeeeccHHHHHHHHH
Q 001989 257 TFIIASNCHPQ--TIDICITRADGFDIKVVVSDL--------KDIDY-KSG-DVCGVLVQYP-GTEGEVLDYGDFIKNAH 323 (985)
Q Consensus 257 ~Vlv~~~~H~s--~~~~~~~~a~~~gi~v~~v~~--------~~l~~-l~~-~t~~V~v~~p-n~~G~v~di~~I~~~a~ 323 (985)
+|++++..|++ +...++ ..|++++.++. ++|++ +++ ++++|++++| |++|.+.|+++|.++|+
T Consensus 111 ~Vl~~~~~~~~~~~~~~~~----~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~ 186 (393)
T 1vjo_A 111 VVLIGVAGYFGNRLVDMAG----RYGADVRTISKPWGEVFSLEELRTALETHRPAILALVHAETSTGARQPLEGVGELCR 186 (393)
T ss_dssp EEEEEESSHHHHHHHHHHH----HTTCEEEEEECCTTCCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCTTHHHHHH
T ss_pred EEEEEcCChhHHHHHHHHH----HcCCceEEEecCCCCCCCHHHHHHHHhhCCceEEEEeccCCCcceeccHHHHHHHHH
Confidence 99999999998 655543 35778777653 45665 666 7899999988 88999999999999999
Q ss_pred hCCcEEEEEecCccccCCC-CCCcccceEEEecC-ccccccCCCCCCcEEEEEEchhhHhcCCCc---eeeeeecCCCCc
Q 001989 324 ANGVKVVMATDLLALTILK-PPGELGADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGR---IVGVSIDSSGKP 398 (985)
Q Consensus 324 ~~galliV~a~~~~lg~l~-~~~~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~---~vG~t~d~~g~~ 398 (985)
++|+++++| +..++|... ....+++|+++++. |+|++| +++|++++++++++.+..+ +.+
T Consensus 187 ~~~~~li~D-ea~~~g~~~~~~~~~~~di~~~s~sK~l~~~-----~~~G~l~~~~~~~~~~~~~~~~~~~--------- 251 (393)
T 1vjo_A 187 EFGTLLLVD-TVTSLGGVPIFLDAWGVDLAYSCSQKGLGCS-----PGASPFTMSSRAIEKLQRRRTKVAN--------- 251 (393)
T ss_dssp HHTCEEEEE-CTTTTTTSCCCTTTTTCSEEECCSSSTTCSC-----SSCEEEEECHHHHHHHHTCSSCCSC---------
T ss_pred HcCCEEEEE-CCccccCcCCcccccCccEEEEcCcccccCC-----CceEEEEECHHHHHHHhccCCCCCc---------
Confidence 999999995 344555332 23567899999998 777643 2579999999887665111 101
Q ss_pred ceeeeccccc---ccccccccCCCccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCC--
Q 001989 399 ALRVAMQTRE---QHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLP-- 473 (985)
Q Consensus 399 ~~~l~l~tre---~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~-- 473 (985)
+.+.+..+. .+.++..+|.|. ....++.+++ ..+..+|++++.++..++.+++.+.|+++| +++..+.
T Consensus 252 -~~~~~~~~~~~~~~~~~~~g~~~~---~~~~a~~~al--~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~~ 324 (393)
T 1vjo_A 252 -WYLDMNLLGKYWGSERVYHHTAPI---NLYYALREAL--RLIAQEGLANCWQRHQKNVEYLWERLEDIG-LSLHVEKEY 324 (393)
T ss_dssp -STTCHHHHHHHHSTTCCCCSCCCH---HHHHHHHHHH--HHHHHHCHHHHHHHHHHHHHHHHHHHHHTT-CCBSSCGGG
T ss_pred -eecCcHhhhhhhccCCCCCCCCCH---HHHHHHHHHH--HHHHHccHHHHHHHHHHHHHHHHHHHHHcC-CcccCCccc
Confidence 100000000 011122223333 2233333333 444455789999999999999999999986 8776432
Q ss_pred -CcceEEEecC-C--HHHHHHHHHHc-Cceeeee----cCCeEEEEec-cCCCHHHHHHHHHHHh
Q 001989 474 -FFDTVKVKCA-D--AHAIASAAYKI-EMNLRVV----DSNTVTASFD-ETTTLEDVDKLFIVFA 528 (985)
Q Consensus 474 -~~~~~~~~~~-~--~~~v~~~L~~~-GI~~~~~----~~~~lris~t-~~~t~edId~li~aL~ 528 (985)
..+.+.+..+ + ..++.+.|.++ ||.+... .++.+|+++. ..++++++++++++|.
T Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~~~~~~~~~i~~~~~~l~ 389 (393)
T 1vjo_A 325 RLPTLTTVCIPDGVDGKAVARRLLNEHNIEVGGGLGELAGKVWRVGLMGFNSRKESVDQLIPALE 389 (393)
T ss_dssp BCSSEEEEECCTTCCHHHHHHHHHHHHCEECEECCGGGTTTEEEEECCGGGCSHHHHHHHHHHHH
T ss_pred cCCcEEEEEcCCCCCHHHHHHHHHhhCCEEEecCccccCCCEEEEeCCccCChHHHHHHHHHHHH
Confidence 1234556654 2 78899999987 9988542 2578999964 4567778999999986
|
| >3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.3e-18 Score=199.36 Aligned_cols=352 Identities=11% Similarity=0.069 Sum_probs=214.0
Q ss_pred HHHHHHHHHHhccccCcccccccccccccCCCccccccccccccccc-cCCCCchhhhhhHHHHHHHHHHHHHHHhCC--
Q 001989 571 HELLRYIHLLQSKELSLCHSMIPLGSCTMKLNATTEMMPVTWPSFAN-IHPFAPADQAQGYQEMFNNLGEWLCTITGF-- 647 (985)
Q Consensus 571 ~e~~~~l~~l~~~~~~~~~~~~~lG~~t~~~~~~~~~~~~~~~~f~~-~~p~~p~e~~~G~~~~~~e~~~~la~l~G~-- 647 (985)
.++.+..+++...+. .++.|+++.+.++...+..........+ ..-|.+ .+|..++.+++.+++.+.+|.
T Consensus 17 ~~~~~~~~~~~~~g~----~~i~l~~g~~~~~~~~~v~~a~~~~~~~~~~~y~~---~~g~~~lr~~ia~~~~~~~g~~~ 89 (391)
T 3h14_A 17 MDVMEAARRAEEAGR----RIIHMEVGQPGTGAPRGAVEALAKSLETDALGYTV---ALGLPALRQRIARLYGEWYGVDL 89 (391)
T ss_dssp HHHHHHHHHHHHTTC----CCEECCCSSCSSCSCHHHHHHHHHHHC-------------CCHHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHHHHhcCC----CeEEccCCCCCCCCCHHHHHHHHHHHhcCCCCCCC---CCChHHHHHHHHHHHHHHhCCCC
Confidence 455555666554442 3566776665554322211111000100 111221 245555666666666666674
Q ss_pred Cccc-eecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcCCCC--CCCCHHHHHHHH
Q 001989 648 DSFS-LQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAK--GNINIEELRKAA 724 (985)
Q Consensus 648 ~~~~-~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~d~~--g~iD~e~L~~~i 724 (985)
+... ++.++|++|+..++.++. .++++|+++.+.|..+...++..|++++.+|++++ +.+|+++|+++
T Consensus 90 ~~~~v~~t~g~~~al~~~~~~l~--------~~gd~vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~- 160 (391)
T 3h14_A 90 DPGRVVITPGSSGGFLLAFTALF--------DSGDRVGIGAPGYPSYRQILRALGLVPVDLPTAPENRLQPVPADFAGL- 160 (391)
T ss_dssp CGGGEEEESSHHHHHHHHHHHHC--------CTTCEEEEEESCCHHHHHHHHHTTCEEEEEECCGGGTTSCCHHHHTTS-
T ss_pred CHHHEEEecChHHHHHHHHHHhc--------CCCCEEEEcCCCCccHHHHHHHcCCEEEEeecCcccCCCCCHHHHHhc-
Confidence 3333 555667776654444331 36789999888777777778889999999999764 46899988754
Q ss_pred HhcCCCEEEEEEEcCC-Ccccccc--CHHHHHHHHHHcCCEEEEEcccccc-ccC-CCCCCc-cCCcEEEeCCccccccc
Q 001989 725 EANRDNLSTLMVTYPS-THGVYEE--GIDEICKIIHDNGGQVYMDGANMNA-QVG-LTSPGY-IGADVCHLNLHKTFCIP 798 (985)
Q Consensus 725 ~~~~~~t~~Vvv~~pn-~~G~i~~--di~eI~~la~~~galliVD~a~~~~-~~~-l~~pg~-~g~Di~~~s~hK~l~~p 798 (985)
++++|++++|+ ++|.+.+ ++++|+++|+++|+++|+|+++... ..+ ...... .+.++++.|++|+|+.
T Consensus 161 -----~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~- 234 (391)
T 3h14_A 161 -----DLAGLMVASPANPTGTMLDHAAMGALIEAAQAQGASFISDEIYHGIEYEAKAVTALELTDECYVINSFSKYFSM- 234 (391)
T ss_dssp -----CCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCGGGTCSSSEEEEESSSTTCC-
T ss_pred -----CCeEEEECCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEECcchhcccCCCCcChhhcCCCEEEEEechhccCC-
Confidence 57788999984 6999861 3899999999999999999998421 111 111112 2356888899999854
Q ss_pred CCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHHHHHHHHHHHHH
Q 001989 799 HGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILN 878 (985)
Q Consensus 799 ~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~ 878 (985)
.|.++|++++++++.+.+..... ..+.+. +.....++.+.+. +.+.+.+..++..++
T Consensus 235 ---~G~r~G~~~~~~~~~~~~~~~~~------------~~~~~~------~~~~~~a~~~~l~--~~~~~~~~~~~~~~~ 291 (391)
T 3h14_A 235 ---TGWRVGWMVVPEDQVRVVERIAQ------------NMFICA------PHASQVAALAALD--CDAELQANLDVYKAN 291 (391)
T ss_dssp ---TTSCCEEEECCGGGHHHHHHHHH------------HTTCCC------CHHHHHHHHHHTT--CHHHHHHHHHHHHHH
T ss_pred ---ccceeEEEEeCHHHHHHHHHHHh------------hhccCC------CHHHHHHHHHHhC--ChHHHHHHHHHHHHH
Confidence 36789999988776654421100 001111 1122222233343 566777777888888
Q ss_pred HHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHC-CCccCCC-CCC---CCCEEEEeccCC
Q 001989 879 ANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDY-GFHGPTM-SWP---VPGTLMIEPTES 952 (985)
Q Consensus 879 a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~-Gi~~~~~-~~p---~~~~lris~t~~ 952 (985)
++++.+.|++ ++..... +.+..+ +.+.++. .+.+..++.++|.++ ||.+... .+. ..+.+||++..
T Consensus 292 ~~~l~~~l~~~~~~~~~~-~~~~~~--~~~~~~~----~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~iRis~~~- 363 (391)
T 3h14_A 292 RKLMLERLPKAGFTRIAP-PDGAFY--VYADVSD----LTDDSRAFAAEILEKAGVAVTPGLDFDPERGAGTLRFSYAR- 363 (391)
T ss_dssp HHHHHHHHHHHTCCCBCC-CCBTTE--EEEECTT----TCSCHHHHHHHHHHHHCEECEEGGGTCTTTGGGEEEEECCS-
T ss_pred HHHHHHHHHHcCCCcccC-CCeeEE--EEEecCc----cCCCHHHHHHHHHHHCCEEEcCchhhCCCCCCCeEEEEecC-
Confidence 9999999987 3332222 222222 3455541 145788999998775 9987532 121 24799999987
Q ss_pred CCHHHHHHHHccCChhHHHHhhccCC
Q 001989 953 ESKSWTGIVMLSSPSEKKLHRLKMGR 978 (985)
Q Consensus 953 ~t~eeId~~~~~~~l~~~~~~~~~~~ 978 (985)
+++||++ +++.|++++++....+
T Consensus 364 -~~~~i~~--~l~~l~~~~~~~~~~~ 386 (391)
T 3h14_A 364 -ATADIEE--GLDRLEAFMQARGEGH 386 (391)
T ss_dssp -CHHHHHH--HHHHHHHHHHHC----
T ss_pred -CHHHHHH--HHHHHHHHHHHhcccc
Confidence 7899999 8899999988766544
|
| >3qm2_A Phosphoserine aminotransferase; structural genomics, center for structural genomics of infec diseases, csgid; 2.25A {Salmonella enterica subsp} PDB: 1bjn_A* 1bjo_A* 3qbo_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=4.3e-20 Score=210.97 Aligned_cols=300 Identities=11% Similarity=-0.005 Sum_probs=190.3
Q ss_pred hHHHHHHHHHHHHHHHhCCCcc--cee-cCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHH--HHHCCcE
Q 001989 629 GYQEMFNNLGEWLCTITGFDSF--SLQ-PNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPAT--AAMCGMK 703 (985)
Q Consensus 629 G~~~~~~e~~~~la~l~G~~~~--~~~-~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~--a~~~G~~ 703 (985)
.+.++++++++.+++++|.+.. .++ .++|++++. +++.++. .+++++++....|-++++. ++..| +
T Consensus 69 ~~~~~~~~ar~~la~ll~~~~~~evif~t~~~T~a~n---~ai~~l~-----~~gd~v~~~~~~~~~~~~~~~a~~~G-~ 139 (386)
T 3qm2_A 69 EFIQVAEEAEQDFRDLLNIPSNYKVLFCHGGGRGQFA---GVPLNLL-----GDKTTADYVDAGYWAASAIKEAKKYC-A 139 (386)
T ss_dssp ----CCHHHHHHHHHHHTCCTTEEEEEEESCTTHHHH---HHHHHHC-----TTCCEEEEEESSHHHHHHHHHHTTTS-E
T ss_pred HHHHHHHHHHHHHHHHhCCCCCceEEEEcCCchHHHH---HHHHhcc-----CCCCeEEEEeCCHHHHHHHHHHHHhC-C
Confidence 4457788999999999999642 344 456776664 4444432 3567776544434355543 45678 9
Q ss_pred EEEEcCC--CCCC-CCHHHHHHHHHhcCCCEEEEEEEcC-CCcccc-ccCHHHHHHHHHHcCCEEEEEccccccccCCCC
Q 001989 704 IVSVGTD--AKGN-INIEELRKAAEANRDNLSTLMVTYP-STHGVY-EEGIDEICKIIHDNGGQVYMDGANMNAQVGLTS 778 (985)
Q Consensus 704 vv~v~~d--~~g~-iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i-~~di~eI~~la~~~galliVD~a~~~~~~~l~~ 778 (985)
+++++++ ++|. +|+++++++++ ++|++|++++. |.+|++ + |+++|+ +|++++||++|+++...+ +
T Consensus 140 v~~v~~~~~~~G~~~~~~~~~~~l~---~~t~lV~~~h~et~tG~~i~-pi~~i~-----~g~~~~vDa~qs~g~~pi-d 209 (386)
T 3qm2_A 140 PQIIDAKITVDGKRAVKPMREWQLS---DNAAYLHYCPNETIDGIAID-ETPDFG-----PEVVVTADFSSTILSAPL-D 209 (386)
T ss_dssp EEEEECEEEETTEEEECCGGGCCCC---TTCSCEEECSEETTTTEECC-CCCCCC-----TTCCEEEECTTTTTSSCC-C
T ss_pred eEEEecCcccCCCCCCchHHHhhcC---CCCcEEEEECCcCCcCEecC-chhhhc-----CCCEEEEEcccccCCCCC-C
Confidence 9999987 5675 88888888776 88999988874 568995 8 899986 799999999997554433 3
Q ss_pred CCccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCC---ccccCCCCCCCCCCCCCCCCCCcchhhhHHHHH
Q 001989 779 PGYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSH---PVVSTGGIPAPEKSQPLGTIAAAPWGSALILPI 855 (985)
Q Consensus 779 pg~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~---~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~ 855 (985)
..++ |++++|+||++ |.||+|++++++++.+.+++. ++.... ........+|+++.. . .++.
T Consensus 210 v~~~--~~~~~s~hK~l------GP~G~g~l~v~~~~~~~~~~~~p~~~~~~~-~~~~~~~~gTp~v~~----i-~~l~- 274 (386)
T 3qm2_A 210 VSRY--GVIYAGAQKNI------GPAGLTLVIVREDLLGKAHESCPSILDYTV-LNDNDSMFNTPPTFA----W-YLSG- 274 (386)
T ss_dssp GGGC--SEEEEETTTTT------CCTTEEEEEEEGGGCSCCCTTSCGGGCHHH-HHHC-------CCSH----H-HHHH-
T ss_pred cccc--CEEEEeccccc------CCCccEEEEECHHHHhhhcccCCcHHHHHH-HhhcCCCCCCCcHHH----H-HHHH-
Confidence 4455 46779999998 346899999998876554321 110000 000001123444431 1 1222
Q ss_pred HHHHHHHhcHH-HHHHHHHHHHHHHHHHHHHhhccCCeeec-CCCC-ceeeEEEEEecCccccCCCCHHHHHHHHHHCCC
Q 001989 856 SYTYIAMMGSK-GLTEASKIAILNANYMAKRLEKHYPILFR-GVNG-TVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGF 932 (985)
Q Consensus 856 a~a~l~~lg~e-Gl~~~~~~~~~~a~~l~~~L~~g~~l~~~-~~~~-~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi 932 (985)
++++.+..+ |+.++.++..+++++++++|++. ++... .+.. .....+.+.+++ .+.+ .++.+.|.++||
T Consensus 275 --~Al~~~~~~gG~~~i~~~~~~l~~~l~~~l~~~-~~~~~~~~~~~rs~~iv~f~~~~----~~~~-~~~~~~L~~~gI 346 (386)
T 3qm2_A 275 --LVFKWLKAQGGVAAMHKINQQKAELLYGVIDNS-DFYRNDVAQANRSRMNVPFQLAD----NTLD-KVFLEESFAAGL 346 (386)
T ss_dssp --HHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTC-SSEECCBCGGGBCSSEEEEEESS----GGGH-HHHHHHHHHTTE
T ss_pred --HHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHC-CCcccCCCHHHcCceEEEEECCC----cccc-HHHHHHHHHCCC
Confidence 334555556 78888889999999999999872 32111 1111 111234455541 1234 577788999999
Q ss_pred ccCCCCCCCCCEEEEeccCCCCHHHHHHHHccCChhHHHHh
Q 001989 933 HGPTMSWPVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHR 973 (985)
Q Consensus 933 ~~~~~~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~ 973 (985)
.+..-... .+++|+|+..++|+||||+ +++.|+++.++
T Consensus 347 ~~~~g~~~-~~~iRiS~~~~~t~edId~--l~~~l~~~~~~ 384 (386)
T 3qm2_A 347 HALKGHRV-VGGMRASIYNAMPIEGVKA--LTDFMIDFERR 384 (386)
T ss_dssp ECCBCCTT-TCSEEEECCTTSCHHHHHH--HHHHHHHHHHH
T ss_pred EEeCCCCC-cCeEEEEcCCCCCHHHHHH--HHHHHHHHHHh
Confidence 86432111 2579999999999999999 77888887654
|
| >1svv_A Threonine aldolase; structural genomics, structural genomics of pathogenic proto SGPP, protein structure initiative, PSI; 2.10A {Leishmania major} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.80 E-value=4.4e-19 Score=199.96 Aligned_cols=293 Identities=12% Similarity=0.054 Sum_probs=194.9
Q ss_pred hHHHHHHHHHHHHHHHhCCCcc-ceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHH--HHHHCCcEEE
Q 001989 629 GYQEMFNNLGEWLCTITGFDSF-SLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPA--TAAMCGMKIV 705 (985)
Q Consensus 629 G~~~~~~e~~~~la~l~G~~~~-~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~--~a~~~G~~vv 705 (985)
|..+..+++++++++++|.+.. .++.++|++|++.++.+++ .++++|++++..|..+.. .++..|++++
T Consensus 46 g~~~~~~~~~~~l~~~~g~~~~~v~~~~g~t~a~~~~~~~~~--------~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~ 117 (359)
T 1svv_A 46 GQDSHCAKAARLIGELLERPDADVHFISGGTQTNLIACSLAL--------RPWEAVIATQLGHISTHETGAIEATGHKVV 117 (359)
T ss_dssp TCSHHHHHHHHHHHHHHTCTTSEEEEESCHHHHHHHHHHHHC--------CTTEEEEEETTSHHHHSSTTHHHHTTCCEE
T ss_pred cccHHHHHHHHHHHHHhCCCCccEEEeCCchHHHHHHHHHHh--------CCCCEEEEcccchHHHHHHHHHhcCCCeeE
Confidence 3345677899999999998764 3556778887765555442 367899999887765544 3677899999
Q ss_pred EEcCCCCCCCCHHHHHHHHHhc----CCCEEEEEEEcCCCccccccC---HHHHHHHHHHcCCEEEEEccc---cccccC
Q 001989 706 SVGTDAKGNINIEELRKAAEAN----RDNLSTLMVTYPSTHGVYEEG---IDEICKIIHDNGGQVYMDGAN---MNAQVG 775 (985)
Q Consensus 706 ~v~~d~~g~iD~e~L~~~i~~~----~~~t~~Vvv~~pn~~G~i~~d---i~eI~~la~~~galliVD~a~---~~~~~~ 775 (985)
.+|.+ ++.+|+++|++++++. .+++++|++++||++|.+. | +++|.++|+++|+++|+|++| ..+..+
T Consensus 118 ~v~~~-~~~~d~~~l~~~l~~~~~~~~~~~~~v~~~~~~ptG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~ 195 (359)
T 1svv_A 118 TAPCP-DGKLRVADIESALHENRSEHMVIPKLVYISNTTEVGTQY-TKQELEDISASCKEHGLYLFLDGARLASALSSPV 195 (359)
T ss_dssp EECCT-TSCCCHHHHHHHHHHSCSTTSCEEEEEEEESSCTTSCCC-CHHHHHHHHHHHHHHTCEEEEECTTHHHHHTSTT
T ss_pred EEeCC-CCeecHHHHHHHHHHHHhccCCCceEEEEEcCCCCceec-CHHHHHHHHHHHHHhCCEEEEEccchhhhhcCCC
Confidence 99986 7889999999999832 1138999999998899987 5 999999999999999999998 222211
Q ss_pred CCCCCc----cCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhH
Q 001989 776 LTSPGY----IGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSAL 851 (985)
Q Consensus 776 l~~pg~----~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~ 851 (985)
. .... .+.|++++++||+. +..+.|++++++++.+.+....... +.+.+ .+...
T Consensus 196 ~-~~~~~~~~~~~d~~~~s~~K~g------~~~~~g~l~~~~~~~~~~~~~~~~~-------------~~~~~--~~~~~ 253 (359)
T 1svv_A 196 N-DLTLADIARLTDMFYIGATKAG------GMFGEALIILNDALKPNARHLIKQR-------------GALMA--KGWLL 253 (359)
T ss_dssp C-CCCHHHHHHHCSEEEEECTTTT------CSSCEEEEECSGGGCTTHHHHHHHT-------------TCCCT--TTHHH
T ss_pred c-chhhhhhhhcCCEEEEecccCC------CCCceEEEEEcccHHHHHHHHHhcC-------------Ccccc--cchhh
Confidence 1 1121 36899999999963 2236789998887765442110000 00000 01111
Q ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHC
Q 001989 852 ILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDY 930 (985)
Q Consensus 852 ~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~ 930 (985)
.+. + ...+..+++.+..++..++++++.+.|+. ++.+. ++.+..+ +.+.++ .++.++|.++
T Consensus 254 ~~~--~--~~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~--~~~~~~~--~~~~~~----------~~~~~~l~~~ 315 (359)
T 1svv_A 254 GIQ--F--EVLMKDNLFFELGAHSNKMAAILKAGLEACGIRLA--WPSASNQ--LFPILE----------NTMIAELNND 315 (359)
T ss_dssp HHH--H--HHHTSTTHHHHHHHHHHHHHHHHHHHHHHTTCCBS--SCCSSSE--ECBEEE----------HHHHHHHTTT
T ss_pred HHH--H--HHHHhhhhHHHHHHHHHHHHHHHHHHhccCCeEEc--cCCccce--EEEEcC----------HHHHHHHHHh
Confidence 111 1 12344556777777888999999999943 44442 2222221 222321 4788999998
Q ss_pred -CCccCCCCCCCCCEEEEeccCCCCHHHHHHHHccCChhHHHHh
Q 001989 931 -GFHGPTMSWPVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHR 973 (985)
Q Consensus 931 -Gi~~~~~~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~ 973 (985)
||.+........+.+|++++..++++||++ +++.|++++++
T Consensus 316 ~gi~v~~~~~~~~~~iRi~~~~~~~~~~i~~--~~~~l~~~~~~ 357 (359)
T 1svv_A 316 FDMYTVEPLKDGTCIMRLCTSWATEEKECHR--FVEVLKRLVAS 357 (359)
T ss_dssp EECEEEEEETTTEEEEEEECCTTCCHHHHHH--HHHHHHHC---
T ss_pred cCEEEEecccCCCceEEEEccCcCCHHHHHH--HHHHHHHHHhc
Confidence 998722111124689999999999999999 77777776654
|
| >3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics, structural genomics consortium, disease mutation, phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens} PDB: 3pdx_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=1.5e-18 Score=201.79 Aligned_cols=300 Identities=11% Similarity=0.061 Sum_probs=198.9
Q ss_pred HHHHHHHHHHhC-----CCccc-eecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEc
Q 001989 635 NNLGEWLCTITG-----FDSFS-LQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVG 708 (985)
Q Consensus 635 ~e~~~~la~l~G-----~~~~~-~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~ 708 (985)
.++++.++++++ .+... ++.++|++|+..++.++. .++++|+++.+.|..+...++..|++++.+|
T Consensus 99 ~~lr~~la~~~~~~~~~~~~~~v~~t~g~t~al~~~~~~l~--------~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~ 170 (427)
T 3dyd_A 99 LSSREEIASYYHCPEAPLEAKDVILTSGCSQAIDLCLAVLA--------NPGQNILVPRPGFSLYKTLAESMGIEVKLYN 170 (427)
T ss_dssp HHHHHHHHHHHCBTTBCCCGGGEEEESSHHHHHHHHHHHHC--------CTTCEEEEEESCCTHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHHHHhhcCCCCChHHEEEecCcHHHHHHHHHHhc--------CCCCEEEEcCCCchhHHHHHHHcCCEEEEEe
Confidence 467788888887 44433 556677777755444332 3678999988878777777888999999998
Q ss_pred CCC--CCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccC---HHHHHHHHHHcCCEEEEEcccccc-ccC--CCCC
Q 001989 709 TDA--KGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEG---IDEICKIIHDNGGQVYMDGANMNA-QVG--LTSP 779 (985)
Q Consensus 709 ~d~--~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~d---i~eI~~la~~~galliVD~a~~~~-~~~--l~~p 779 (985)
+++ ++.+|+++|+++++ +++++|++++| |++|.+. + +++|+++|+++|+++++|+++... ..+ +...
T Consensus 171 ~~~~~~~~~d~~~l~~~l~---~~~~~v~i~~p~nptG~~~-~~~~l~~i~~~~~~~~~~~i~Deay~~~~~~g~~~~~~ 246 (427)
T 3dyd_A 171 LLPEKSWEIDLKQLEYLID---EKTACLIVNNPSNPCGSVF-SKRHLQKILAVAARQCVPILADEIYGDMVFSDCKYEPL 246 (427)
T ss_dssp EEGGGTTEECHHHHHSSCC---TTEEEEEEESSCTTTCCCC-CHHHHHHHHHHHHHTTCCEEEECTTTTCBCSSCCCCCG
T ss_pred cccccCCCCCHHHHHHHhc---cCCCEEEEECCCCCCCCCC-CHHHHHHHHHHHHHCCCEEEEEcCchhhccCCCcCccH
Confidence 854 46789999999997 68999999999 5799987 7 999999999999999999998421 111 1111
Q ss_pred CccCCc---EEEeCCcccccccCCCCCCceEEEEEccc-------ccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhh
Q 001989 780 GYIGAD---VCHLNLHKTFCIPHGGGGPGMGPIGVKKH-------LAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGS 849 (985)
Q Consensus 780 g~~g~D---i~~~s~hK~l~~p~g~GGPg~G~i~~~~~-------l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~ 849 (985)
..++.| +++.|++|.|+. .|.++|++++++. +...+... . . .+.+ . +
T Consensus 247 ~~~~~~~~vi~~~S~sK~~~~----~G~riG~~~~~~~~~~~~~~i~~~l~~~--~---------~--~~~~--~----~ 303 (427)
T 3dyd_A 247 ATLSTDVPILSCGGLAKRWLV----PGWRLGWILIHDRRDIFGNEIRDGLVKL--S---------Q--RILG--P----C 303 (427)
T ss_dssp GGGCSSCCEEEEEESTTTSSC----GGGCCEEEEEECSTTSSHHHHHHHHHHH--H---------H--HHCC--S----C
T ss_pred HHhCCCCcEEEEeeccccCCC----cCcceEEEEecCcchhhHHHHHHHHHHH--H---------h--ccCC--C----C
Confidence 223333 667799998854 3567899998742 22111100 0 0 0001 1 1
Q ss_pred hHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhccCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHH-
Q 001989 850 ALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLM- 928 (985)
Q Consensus 850 ~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~- 928 (985)
.....++.++|.....+.+.+..++..++++++.+.|++...+....+.+..+ +.+.++......+.+..+++++|.
T Consensus 304 ~~~~~a~~~~L~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~p~~g~~--~~~~l~~~~~~~~~~~~~~~~~l~~ 381 (427)
T 3dyd_A 304 TIVQGALKSILCRTPGEFYHNTLSFLKSNADLCYGALAAIPGLRPVRPSGAMY--LMVGIEMEHFPEFENDVEFTERLVA 381 (427)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHSTTEEEECCSBTTE--EEEEECGGGCTTCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhcCCCceecCCCeeEE--EEEecCHhhcCCCCCHHHHHHHHHH
Confidence 22233344555555567777888888889999999998632332222222222 223432100001346788898885
Q ss_pred HCCCccCCC-CCCCCCEEEEeccCCCCHHHHHHHHccCChhHHHHhhc
Q 001989 929 DYGFHGPTM-SWPVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRLK 975 (985)
Q Consensus 929 ~~Gi~~~~~-~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~~ 975 (985)
++||.+... .+..++++||+++ +++++|++ +++.|++++++++
T Consensus 382 ~~gV~v~~g~~~~~~~~iRis~~--~~~e~i~~--~l~~l~~~l~~~~ 425 (427)
T 3dyd_A 382 EQSVHCLPATCFEYPNFIRVVIT--VPEVMMLE--ACSRIQEFCEQHY 425 (427)
T ss_dssp HHCEECEEGGGGTCTTEEEEESC--SCHHHHHH--HHHHHHHHHHHHC
T ss_pred HCCEEEECCcccCCCCeEEEEEC--CCHHHHHH--HHHHHHHHHHHhh
Confidence 789987532 2333589999986 78999999 8889999888765
|
| >3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=99.80 E-value=1e-18 Score=202.70 Aligned_cols=299 Identities=13% Similarity=0.105 Sum_probs=197.7
Q ss_pred HHHHHHHHHHHHHHhC--CCccc-eecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEE
Q 001989 631 QEMFNNLGEWLCTITG--FDSFS-LQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSV 707 (985)
Q Consensus 631 ~~~~~e~~~~la~l~G--~~~~~-~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v 707 (985)
.+..+++++++++.+| .+... ++.++|++|+++++.++. .++++||++.+.|..+...+...|.+++.+
T Consensus 99 ~~l~~~l~~~l~~~~g~~~~~~~v~~~~g~~ea~~~a~~~~~--------~~gd~Vi~~~~~y~~~~~~~~~~g~~~~~~ 170 (421)
T 3l8a_A 99 DDLYQAVIDWERKEHDYAVVKEDILFIDGVVPAISIALQAFS--------EKGDAVLINSPVYYPFARTIRLNDHRLVEN 170 (421)
T ss_dssp HHHHHHHHHHHHHHHCCCCCGGGEEEESCHHHHHHHHHHHHS--------CTEEEEEEEESCCHHHHHHHHHTTEEEEEE
T ss_pred HHHHHHHHHHHHHHhCCCCCHHHEEEcCCHHHHHHHHHHHhc--------CCCCEEEECCCCcHHHHHHHHHCCCEEEec
Confidence 3566788889999988 44443 555677777765555432 367889998876766666677889999999
Q ss_pred cCC-CC--CCCCHHHHHHHHHhcCCCEEEEEEEcC-CCcccc---ccCHHHHHHHHHHcCCEEEEEcccccc-ccCC--C
Q 001989 708 GTD-AK--GNINIEELRKAAEANRDNLSTLMVTYP-STHGVY---EEGIDEICKIIHDNGGQVYMDGANMNA-QVGL--T 777 (985)
Q Consensus 708 ~~d-~~--g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i---~~di~eI~~la~~~galliVD~a~~~~-~~~l--~ 777 (985)
|++ .+ +.+|+++|++++++ +++++|++++| |++|.+ + ++++|+++|+++|+++|+|++|... ..+- .
T Consensus 171 ~~~~~~~~~~~d~~~le~~i~~--~~~~~vil~~p~nptG~~~~~~-~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~ 247 (421)
T 3l8a_A 171 SLQIINGRFEIDFEQLEKDIID--NNVKIYLLCSPHNPGGRVWDND-DLIKIAELCKKHGVILVSDEIHQDLALFGNTHH 247 (421)
T ss_dssp ECEEETTEEECCHHHHHHHHHH--TTEEEEEEESSBTTTTBCCCHH-HHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCC
T ss_pred cccccCCCeeeCHHHHHHHhhc--cCCeEEEECCCCCCCCCcCCHH-HHHHHHHHHHHcCCEEEEEccccccccCCCCCc
Confidence 985 33 36899999999973 58999999999 579988 5 7999999999999999999998421 1110 0
Q ss_pred -----CCCccCCcEEEeCCcccccccCCCCCCceEEEEEc-ccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhH
Q 001989 778 -----SPGYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVK-KHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSAL 851 (985)
Q Consensus 778 -----~pg~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~-~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~ 851 (985)
.+...+.++.+.+++|+|+. +|.++|+++++ +++.+.+...... ..+.+ . +..
T Consensus 248 ~~~~~~~~~~~~~i~~~s~sK~~g~----~G~~~G~~~~~~~~l~~~~~~~~~~-----------~~~~~--~----n~~ 306 (421)
T 3l8a_A 248 SLNTLDASYKDFTIILSSATKTFNI----AGTKNSFAIIQNESLRRKFQYRQLA-----------NNQHE--V----PTV 306 (421)
T ss_dssp CGGGSCTTGGGTEEEEECSHHHHTC----GGGCCEEEECCSHHHHHHHHHHHHH-----------TTCSC--C----CHH
T ss_pred cHHHcCchhcCcEEEEEeChhhccC----chhheEeEEcCCHHHHHHHHHHHHh-----------cccCC--C----CHH
Confidence 01112455888999999954 35678999887 6665443211000 00111 1 223
Q ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhccCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHH-C
Q 001989 852 ILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMD-Y 930 (985)
Q Consensus 852 ~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~-~ 930 (985)
.+.++.+.+.. +.+.+.+..++..++++++.+.|++...+....+.+..+ ..++++. .+.+..++.++|.+ +
T Consensus 307 ~~~a~~aal~~-~~~~~~~~~~~~~~~~~~l~~~L~~~~~i~~~~~~~~~~--~~v~~~~----~~~~~~~l~~~l~~~~ 379 (421)
T 3l8a_A 307 GMIATQAAFQY-GKPWLEELKTVIEGNIKLVIKELEAKTKIKVMEPEGTYL--VWLDFSA----YAIAQPQLSEKLQNEA 379 (421)
T ss_dssp HHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHHHHHHCSCEEECCSBSSE--EEEECGG----GTCCTTHHHHHHHHTT
T ss_pred HHHHHHHHHhc-cHHHHHHHHHHHHHHHHHHHHHHHhCCCceEeCCCeeEE--EEEeccc----cCCCHHHHHHHHHHhC
Confidence 33334444443 455677777788889999999997632222222223222 2356541 13567789999975 5
Q ss_pred CCccCCC-CC--CCCCEEEEeccCCCCHHHHHHHHccCChhHHHH
Q 001989 931 GFHGPTM-SW--PVPGTLMIEPTESESKSWTGIVMLSSPSEKKLH 972 (985)
Q Consensus 931 Gi~~~~~-~~--p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~ 972 (985)
||.+... .+ ...+.+||+++ +++++|++ +++.|+++++
T Consensus 380 gi~v~~g~~f~~~~~~~iRi~~~--~~~~~i~~--~l~~l~~~l~ 420 (421)
T 3l8a_A 380 KVVLNDGAHFGKEGKYFARLNVA--TPKNTVQE--ALSRIISVFG 420 (421)
T ss_dssp CEECEEGGGGCGGGTTEEEEECC--SCHHHHHH--HHHHHHHHC-
T ss_pred CEEEECchhhCCCCCCEEEEEec--CCHHHHHH--HHHHHHHHHh
Confidence 9987532 12 12589999998 68999999 7777777654
|
| >3frk_A QDTB; aminotransferase, sugar-modification, natural porduct; HET: TQP; 2.15A {Thermoanaerobacteriumthermosaccharolyticum} | Back alignment and structure |
|---|
Probab=99.80 E-value=7.1e-19 Score=200.32 Aligned_cols=295 Identities=13% Similarity=0.050 Sum_probs=190.7
Q ss_pred HHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcCC-CC
Q 001989 634 FNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTD-AK 712 (985)
Q Consensus 634 ~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~d-~~ 712 (985)
..++++.+++++|.+. .+++++|++|+..++.++. ..++++|+++...|..+...++..|++++.++++ ++
T Consensus 38 ~~~l~~~la~~~~~~~-~i~~~sgt~al~~~l~~l~-------~~~gd~Vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 109 (373)
T 3frk_A 38 DKKFEQEFADYCNVNY-CIGCGNGLDALHLILKGYD-------IGFGDEVIVPSNTFIATALAVSYTGAKPIFVEPDIRT 109 (373)
T ss_dssp HHHHHHHHHHHHTSSE-EEEESCHHHHHHHHHHHTT-------CCTTCEEEEETTSCTHHHHHHHHHSCEEEEECEETTT
T ss_pred HHHHHHHHHHHhCCCe-EEEeCCHHHHHHHHHHHcC-------CCCcCEEEECCCCcHHHHHHHHHcCCEEEEEeccccc
Confidence 5688899999999874 4566788887755554331 2468899999998888777788889999999987 46
Q ss_pred CCCCHHHHHHHHHhcCCCEEEEEEEcCCCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCccC--CcEEEeC
Q 001989 713 GNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIG--ADVCHLN 790 (985)
Q Consensus 713 g~iD~e~L~~~i~~~~~~t~~Vvv~~pn~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~g--~Di~~~s 790 (985)
+.+|+++|+++++ +++++|++++ .+|... |+++|.++|+++|+++|+|++|..+.. + ....++ .|++++|
T Consensus 110 ~~~d~~~l~~~l~---~~~~~v~~~n--~~G~~~-~l~~i~~l~~~~~~~li~D~a~~~g~~-~-~~~~~~~~~d~~~~S 181 (373)
T 3frk_A 110 YNIDPSLIESAIT---EKTKAIIAVH--LYGQPA-DMDEIKRIAKKYNLKLIEDAAQAHGSL-Y-KGMKVGSLGDAAGFS 181 (373)
T ss_dssp TEECGGGTGGGCC---TTEEEEEEEC--CTTCCC-CHHHHHHHHHHHTCEEEEECTTCTTCE-E-TTEETTSSSSEEEEE
T ss_pred cCcCHHHHHHhcC---CCCeEEEEEC--CCcCcc-cHHHHHHHHHHcCCEEEEECCcccCCE-E-CCEeccccccEEEEe
Confidence 8899999999997 7899988665 579887 899999999999999999999864332 1 222334 7999988
Q ss_pred C--cccccccCCCCC-CceEEEEEcc-cccCcCCCC-ccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcH
Q 001989 791 L--HKTFCIPHGGGG-PGMGPIGVKK-HLAPFLPSH-PVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGS 865 (985)
Q Consensus 791 ~--hK~l~~p~g~GG-Pg~G~i~~~~-~l~~~lp~~-~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~ 865 (985)
+ ||+++ | +.+|++++++ .+.+.+... ..|.... ... ...+ .+.. .... .++. .....
T Consensus 182 ~~~~K~l~------~~g~gg~~~~~~~~~~~~~~~~~~~g~~~~-~~~-~~~g-~~~~----~~~~--~aa~---~~~~~ 243 (373)
T 3frk_A 182 FYPAKNLG------SLGDGGAVVTNDKDLAEKIKALSNYGSEKK-YHH-IYKG-FNSR----LDEL--QAGF---LRVKL 243 (373)
T ss_dssp CCTTSSSC------CSSSCEEEEESCHHHHHHHHHHHBTTCSBT-TBC-CSCC-CBCC----CCHH--HHHH---HHHHH
T ss_pred CcCCCccC------ccceeEEEEeCCHHHHHHHHHHHhcCcccC-Ccc-cccc-ccCC----CCHH--HHHH---HHHHH
Confidence 4 59873 3 2367777764 333222100 0010000 000 0000 0110 0111 1121 22223
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCeeecCC-CC--ceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCC-CCC
Q 001989 866 KGLTEASKIAILNANYMAKRLEKHYPILFRGV-NG--TVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMS-WPV 941 (985)
Q Consensus 866 eGl~~~~~~~~~~a~~l~~~L~~g~~l~~~~~-~~--~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~-~p~ 941 (985)
+++.+..++..++++++.+.|++.. +..+.. .+ ..++.+.+.. .+.+++.+.|.++||.++... .|.
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~--------~~~~~l~~~L~~~gI~v~~~~~~~~ 314 (373)
T 3frk_A 244 KYLDKWNEERRKIAQKYIAGINNPN-VIIPVEADYAKHVWYTFVIRS--------EKRDELQKYLNNNGIGTLIHYPIPI 314 (373)
T ss_dssp HTHHHHHHHHHHHHHHHHHHCCCTT-EECCCCCTTEECCCSSEEEEE--------SSHHHHHHHHHHTTBCCBCSCSSCG
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCc-eEeccCCCCCceeeEEEEEEe--------CCHHHHHHHHHHCCCCcccCcCCcc
Confidence 4566667777888899999987622 322211 11 1122233332 257899999999999876322 110
Q ss_pred -----------------------CCEEEEeccCCCCHHHHHHHHccCChhHHHHh
Q 001989 942 -----------------------PGTLMIEPTESESKSWTGIVMLSSPSEKKLHR 973 (985)
Q Consensus 942 -----------------------~~~lris~t~~~t~eeId~~~~~~~l~~~~~~ 973 (985)
.+.+|++++..+|++|||+ ++++|++...+
T Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~t~~di~~--~~~~l~~~~~~ 367 (373)
T 3frk_A 315 HLQQAYKDLGFKTGNFPIAEKIANEILSIPIWYGMKNEEIEY--VIDKINAWKLE 367 (373)
T ss_dssp GGSGGGGGGCCCTTSSHHHHHHHHHEEEECCCTTCCHHHHHH--HHHHHHTCC--
T ss_pred ccChHHHhcCCCCCCCHHHHHHHhCEEEccCCCCCCHHHHHH--HHHHHHHHhhh
Confidence 1679999999999999999 77777665543
|
| >3gbx_A Serine hydroxymethyltransferase; structural genomics, IDP01011, serine hydroxymethyltransfera salmonella typhimurium.; HET: MSE; 1.80A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1dfo_A* 3g8m_A* 1eqb_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=8e-19 Score=202.61 Aligned_cols=297 Identities=18% Similarity=0.159 Sum_probs=189.6
Q ss_pred HHHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHH---HHH--HCCcEEEEE
Q 001989 633 MFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPA---TAA--MCGMKIVSV 707 (985)
Q Consensus 633 ~~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~---~a~--~~G~~vv~v 707 (985)
..+.+++++++++|.+...+.+++|++++++++.++. .++++|+++...|+.+.. ... ..++.++.+
T Consensus 77 ~~~~~~~~la~~~~~~~~~v~~~sGs~a~~~a~~~~~--------~~gd~v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 148 (420)
T 3gbx_A 77 VEQLAIDRAKELFGADYANVQPHSGSQANFAVYTALL--------QPGDTVLGMNLAQGGHLTHGSPVNFSGKLYNIVPY 148 (420)
T ss_dssp HHHHHHHHHHHHHTCSEEECCCSSHHHHHHHHHHHHC--------CTTCEEEEEEEC------------CHHHHSEEEEE
T ss_pred HHHHHHHHHHHHhCCCCceeEecCcHHHHHHHHHHhc--------CCCCEEEecchhhcceeccchhhhhcccceeEEec
Confidence 3445668999999998777767888877765544331 478999998888876431 112 234566667
Q ss_pred cCCCCCCCCHHHHHHHHHhcCCCEEEEEEEcCCCccccccCHHHHHHHHHHcCCEEEEEcccccccc--CCCCCCccCCc
Q 001989 708 GTDAKGNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQV--GLTSPGYIGAD 785 (985)
Q Consensus 708 ~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~pn~~G~i~~di~eI~~la~~~galliVD~a~~~~~~--~l~~pg~~g~D 785 (985)
+.+.++.+|+++|++++++ .++++|++++|++ |... |+++|.++|+++|+++|+|++|..+.. +........+|
T Consensus 149 ~~~~~~~~d~~~l~~~i~~--~~~~~v~~~~~~~-~~~~-~l~~l~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~d 224 (420)
T 3gbx_A 149 GIDESGKIDYDEMAKLAKE--HKPKMIIGGFSAY-SGVV-DWAKMREIADSIGAYLFVDMAHVAGLIAAGVYPNPVPHAH 224 (420)
T ss_dssp EECTTCSCCHHHHHHHHHH--HCCSEEEECCTTC-CSCC-CHHHHHHHHHHTTCEEEEECTTTHHHHHTTSSCCSTTTSS
T ss_pred cCCccCCcCHHHHHHHHHh--cCCeEEEEecCcc-CCcc-CHHHHHHHHHHcCCEEEEECCcchhceecccCCcccccCC
Confidence 7777789999999999983 2578888888875 4555 899999999999999999999853332 11011112389
Q ss_pred EEEeCCcccccccCCCCCCceEEEEEcc---cccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHH
Q 001989 786 VCHLNLHKTFCIPHGGGGPGMGPIGVKK---HLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAM 862 (985)
Q Consensus 786 i~~~s~hK~l~~p~g~GGPg~G~i~~~~---~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~ 862 (985)
+++.|+||+|+ ||.+|++++++ ++.+.+....+.. ..++.. ... ++++.+.+..
T Consensus 225 i~~~s~sK~~~------g~~gg~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~-----~~~-~~a~~~a~~~ 281 (420)
T 3gbx_A 225 VVTTTTHKTLA------GPRGGLILAKGGDEELYKKLNSAVFPS-----------AQGGPL-----MHV-IAGKAVALKE 281 (420)
T ss_dssp EEEEESSGGGC------SCSCEEEEESSCCHHHHHHHHHHHC---------------CCCC-----HHH-HHHHHHHHHH
T ss_pred EEEeecccCCC------CCCceEEEEcCCcHHHHHHhhhhcCCC-----------CCCCcc-----hhH-HHHHHHHHHH
Confidence 99999999983 56569999887 4444332111000 000100 111 1122223333
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCC---
Q 001989 863 MGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMS--- 938 (985)
Q Consensus 863 lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~--- 938 (985)
+..+++.++.++..++++++.+.|++ ++.+...+. . .+.+.+.++. .+.+...+.+.|.++||.+....
T Consensus 282 ~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~-~--~~~~~~~~~~----~~~~~~~~~~~l~~~gi~v~~~~~~~ 354 (420)
T 3gbx_A 282 AMEPEFKVYQQQVAKNAKAMVEVFLNRGYKVVSGGT-E--NHLFLLDLVD----KNLTGKEADAALGRANITVNKNSVPN 354 (420)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHHHHHHTTCEEGGGSC-S--SSEEEEECGG----GTCCHHHHHHHHHHTTEECEEECCTT
T ss_pred HHhHhHHHHHHHHHHHHHHHHHHHHhcCCeeccCCC-C--CeEEEEEcCC----CCCCHHHHHHHHHHCCcEeccccCCC
Confidence 43456777788889999999999986 555432111 1 1224455431 24578889999999999875421
Q ss_pred ---CC-CCCEEEEeccCC----CCHHHHHHHHccCChhHHHHh
Q 001989 939 ---WP-VPGTLMIEPTES----ESKSWTGIVMLSSPSEKKLHR 973 (985)
Q Consensus 939 ---~p-~~~~lris~t~~----~t~eeId~~~~~~~l~~~~~~ 973 (985)
.| .++.+||+++.. .+++||++ +++.|+++++.
T Consensus 355 ~~~~~~~~~~iRi~~~~~~~~~~~~~~i~~--~~~~l~~~l~~ 395 (420)
T 3gbx_A 355 DPKSPFVTSGIRIGSPAVTRRGFKEAEVKE--LAGWMCDVLDN 395 (420)
T ss_dssp CSSCTTTCSEEEEECHHHHHTTCCHHHHHH--HHHHHHHHHHT
T ss_pred CccccCCCcceEEecchhcccCCCHHHHHH--HHHHHHHHHhC
Confidence 11 235699998754 56899999 77888877755
|
| >3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=99.80 E-value=1e-18 Score=203.28 Aligned_cols=315 Identities=13% Similarity=0.105 Sum_probs=193.9
Q ss_pred hhHHHHHHHHHHHHHHHhCCC--ccc-eecCcHHHHHHHHHHHHHHHHHhcCCCCCC--EEEEcCCCCcccHHHHHHCCc
Q 001989 628 QGYQEMFNNLGEWLCTITGFD--SFS-LQPNAGAAGEYAGLMVIRAYHKARGDHHRN--VCIIPVSAHGTNPATAAMCGM 702 (985)
Q Consensus 628 ~G~~~~~~e~~~~la~l~G~~--~~~-~~~~sGa~a~~a~l~air~~~~~~g~~~~~--~IIv~~~~Hg~~~~~a~~~G~ 702 (985)
.|..++.+.+.+++.+.+|.+ ... ++.++|++++..++.++. +..+++ +|+++.+.|..+...++..|+
T Consensus 82 ~g~~~lr~~la~~~~~~~g~~~~~~~i~~t~g~t~al~~~~~~l~------~~~~gd~~~Vl~~~p~~~~~~~~~~~~g~ 155 (437)
T 3g0t_A 82 DGLPELKQEASRFAKLFVNIDIPARACVPTVGSMQGCFVSFLVAN------RTHKNREYGTLFIDPGFNLNKLQCRILGQ 155 (437)
T ss_dssp TCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHHHHHT------TSCTTCSCCEEEEESCCHHHHHHHHHHTC
T ss_pred CChHHHHHHHHHHHHHhhCCCCCcccEEEeCCHHHHHHHHHHHHh------cCCCCCccEEEEeCCCcHhHHHHHHHcCC
Confidence 344444555555555555543 334 445566666644443331 003667 899988877666666788899
Q ss_pred EEEEEcCCCC-CCCCHHHHHHHHHhcCCCEEEEEEEcCC-Ccccccc--CHHHHHHHHHHcCCEEEEEcccccc-ccCC-
Q 001989 703 KIVSVGTDAK-GNINIEELRKAAEANRDNLSTLMVTYPS-THGVYEE--GIDEICKIIHDNGGQVYMDGANMNA-QVGL- 776 (985)
Q Consensus 703 ~vv~v~~d~~-g~iD~e~L~~~i~~~~~~t~~Vvv~~pn-~~G~i~~--di~eI~~la~~~galliVD~a~~~~-~~~l- 776 (985)
+++.+|++++ +.+|+++|+++++. +++++|++++|+ ++|.+.+ ++++|+++|+++|+++|+|++|... ..+.
T Consensus 156 ~~~~v~~~~~~~~~d~~~l~~~l~~--~~~~~v~l~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~~~ 233 (437)
T 3g0t_A 156 KFESFDLFEYRGEKLREKLESYLQT--GQFCSIIYSNPNNPTWQCMTDEELRIIGELATKHDVIVIEDLAYFGMDFRKDY 233 (437)
T ss_dssp CCEEEEGGGGCTTHHHHHHHHHHTT--TCCCEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCCTTSCC
T ss_pred EEEEEeecCCCCccCHHHHHHHHhc--CCceEEEEeCCCCCCCCcCCHHHHHHHHHHHHHCCcEEEEEcchhhcccCCCc
Confidence 9999998644 57899999999931 688999999994 6998861 4888999999999999999998521 1111
Q ss_pred ---------CCC-CccCCcEEEeCCcccccccCCCCCCceEEEEEcccccC-cCCCCc--cccCCCC---CCCCCCCCCC
Q 001989 777 ---------TSP-GYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAP-FLPSHP--VVSTGGI---PAPEKSQPLG 840 (985)
Q Consensus 777 ---------~~p-g~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~-~lp~~~--~g~~~~~---~~~~~~~~~~ 840 (985)
... ...+.++++.|+||+|+. .|.++|++++++++.+ .++... ++..... ........+.
T Consensus 234 ~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~----~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (437)
T 3g0t_A 234 SHPGEPLYQPSVANYTDNYILALSSSKAFSY----AGQRIGVLMISGKLYEREYPDLEESFGRLRFGEALSSSALYALSS 309 (437)
T ss_dssp CSTTSSCCCCCGGGTCSCEEEEEESTTTTSC----GGGCCEEEEECHHHHHCBCGGGHHHHSCSBHHHHHHTTHHHHHHS
T ss_pred CcccccchhhccCCCCCcEEEEEcCccCCCC----ccceeEEEEECHHHhhhhhhcccccccccchhHHHHHHHHhhhcC
Confidence 111 124567899999999854 3567999999877665 411000 0000000 0000000001
Q ss_pred CCCCcchhhhHHHHHHHHHHHHhcHHH---HHHHHHHHHHHHHHHHHHhhc-cCCeee-----cCCCCceeeEEEEEecC
Q 001989 841 TIAAAPWGSALILPISYTYIAMMGSKG---LTEASKIAILNANYMAKRLEK-HYPILF-----RGVNGTVAHEFIVDLRG 911 (985)
Q Consensus 841 ~i~s~~~g~~~~~~~a~a~l~~lg~eG---l~~~~~~~~~~a~~l~~~L~~-g~~l~~-----~~~~~~~~~~~iv~~~~ 911 (985)
+. +.....++.+++... .+. +.+..++..++++++.+.|++ ++.+.. .++.+..+ +.+.++
T Consensus 310 ~~------~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~--~~~~~~- 379 (437)
T 3g0t_A 310 GA------THSAQWGMAAMLKAC-NDGEYNFRDSVIEYGRKARIMKKMFLDNGFNIVYDKDGNEPLADGFY--FTVGYK- 379 (437)
T ss_dssp SS------CHHHHHHHHHHHHHH-HTTSCCHHHHHHHHHHHHHHHHHHHHTTTEEESSCEETTEECCSSSE--EEEEET-
T ss_pred CC------CHHHHHHHHHHHhCc-HhHHHHHHHHHHHHHHHHHHHHHHHHHcCCEEeccccCCCCCceeEE--EEEecC-
Confidence 11 112222233344332 112 667777888899999999987 333320 01112222 345554
Q ss_pred ccccCCCCHHHHHHHHHHCCCccCCCC-C--CCCCEEEEeccCCCCHHHHHHHHccCChhHHHH
Q 001989 912 LKNTAGIEPEDVAKRLMDYGFHGPTMS-W--PVPGTLMIEPTESESKSWTGIVMLSSPSEKKLH 972 (985)
Q Consensus 912 ~~~~~g~~~~~v~~~L~~~Gi~~~~~~-~--p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~ 972 (985)
+.+..++.++|.++||.+.... + +.++++||+++. .+++||++ +++.|+++++
T Consensus 380 -----~~~~~~l~~~L~~~gi~v~~~~~~~~~~~~~iRis~~~-~~~e~i~~--~~~~l~~~~~ 435 (437)
T 3g0t_A 380 -----GMDSSKLIEKFVRYGMCAITLKTTGSKRNEAMRICTSL-LPESQFPD--LEKRLQMLNA 435 (437)
T ss_dssp -----TCCHHHHHHHHHHTTEECEESTTTTCCCTTCEEEECSS-SCGGGHHH--HHHHHHHHHH
T ss_pred -----CCCHHHHHHHHHHcCeEEeeccccCCCCCCEEEEEEec-CCHHHHHH--HHHHHHHHHh
Confidence 4678999999999999875322 1 112789999984 49999999 7777877664
|
| >3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A | Back alignment and structure |
|---|
Probab=99.80 E-value=5.3e-18 Score=192.89 Aligned_cols=284 Identities=15% Similarity=0.105 Sum_probs=191.1
Q ss_pred HHHHHHHHHHHHHhCC--Cccceec-CcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEc
Q 001989 632 EMFNNLGEWLCTITGF--DSFSLQP-NAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVG 708 (985)
Q Consensus 632 ~~~~e~~~~la~l~G~--~~~~~~~-~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~ 708 (985)
++.+.+.+++.+.+|. +...+.. ++|++++..++.++. .++++|++++..|..+...++..|++++.+|
T Consensus 73 ~l~~~la~~l~~~~g~~~~~~~v~~~~G~~~al~~~~~~l~--------~~gd~Vl~~~~~y~~~~~~~~~~g~~~~~v~ 144 (369)
T 3cq5_A 73 ELRDELAAYITKQTGVAVTRDNLWAANGSNEILQQLLQAFG--------GPGRTALGFQPSYSMHPILAKGTHTEFIAVS 144 (369)
T ss_dssp HHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHHHHHC--------STTCEEEEEESSCTHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHhhhhcccCCCChHhEEECCChHHHHHHHHHHhc--------CCCCEEEEcCCChHHHHHHHHHcCCEEEEec
Confidence 4444555555555554 4444444 444555544433321 3678999988888777777888999999999
Q ss_pred CCCCCCCCHHHHHHHHHhcCC-CEEEEEEEcCC-CccccccCHHHHHHHHHHcCCEEEEEccccccccC---CCCCCccC
Q 001989 709 TDAKGNINIEELRKAAEANRD-NLSTLMVTYPS-THGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVG---LTSPGYIG 783 (985)
Q Consensus 709 ~d~~g~iD~e~L~~~i~~~~~-~t~~Vvv~~pn-~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~---l~~pg~~g 783 (985)
.++++.+|+++|+++++ + ++++|++++|+ ++|.+. |++++.++|+.+++++++|+++...... +.....++
T Consensus 145 ~~~~~~~d~~~l~~~i~---~~~~~~v~~~~~~nptG~~~-~~~~l~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~ 220 (369)
T 3cq5_A 145 RGADFRIDMDVALEEIR---AKQPDIVFVTTPNNPTGDVT-SLDDVERIINVAPGIVIVDEAYAEFSPSPSATTLLEKYP 220 (369)
T ss_dssp CCTTSSCCHHHHHHHHH---HHCCSEEEEESSCTTTCCCC-CHHHHHHHHHHCSSEEEEECTTGGGCCSCCGGGGTTTCT
T ss_pred CCcCCCCCHHHHHHHhh---ccCCCEEEEeCCCCCCCCCC-CHHHHHHHHHhCCCEEEEECCchhhcCCcchHHHHhhCC
Confidence 88777899999999998 4 77889999985 699998 8999999999999999999998532211 10112334
Q ss_pred -CcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHH
Q 001989 784 -ADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAM 862 (985)
Q Consensus 784 -~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~ 862 (985)
.++++.|+||+|+.| |.++|++++++++.+.+.... .+.+ . +.....++.+++..
T Consensus 221 ~~~i~~~s~sK~~~~~----G~r~G~~~~~~~~~~~l~~~~--------------~~~~--~----~~~~~~a~~~~l~~ 276 (369)
T 3cq5_A 221 TKLVVSRTMSKAFDFA----GGRLGYFVANPAFIDAVMLVR--------------LPYH--L----SALSQAAAIVALRH 276 (369)
T ss_dssp TTEEEEEESSSTTSCG----GGCCEEEEECTHHHHHHHTTS--------------CTTC--S----CHHHHHHHHHHHHT
T ss_pred CCEEEEEechHhcCCc----ccceEEEEeCHHHHHHHHHcC--------------CCCC--C----CHHHHHHHHHHhcC
Confidence 568899999998543 566899999887655432110 0001 1 12222333344442
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCCCCC
Q 001989 863 MGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPV 941 (985)
Q Consensus 863 lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~~p~ 941 (985)
.+.+.+..++..++++++.+.|++ ++.+. ++.+. + +.+.++ .+..++.++|.++||.+.... .
T Consensus 277 --~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~--~~~~~-~--~~~~~~-------~~~~~l~~~l~~~gi~v~~~~--~ 340 (369)
T 3cq5_A 277 --SADTLGTVEKLSVERVRVAARLEELGYAVV--PSESN-F--VFFGDF-------SDQHAAWQAFLDRGVLIRDVG--I 340 (369)
T ss_dssp --HHHHHTHHHHHHHHHHHHHHHHHHHTCEEE--CCSSS-E--EEEECC-------SSHHHHHHHHHHTTEECBCCS--C
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHhCCCEEC--CCCCe-E--EEEECC-------CCHHHHHHHHHHCCEEEEECC--C
Confidence 244666677788889999999986 55442 22222 2 334442 357889999999999875432 2
Q ss_pred CCEEEEeccCCCCHHHHHHHHccCChhHHHH
Q 001989 942 PGTLMIEPTESESKSWTGIVMLSSPSEKKLH 972 (985)
Q Consensus 942 ~~~lris~t~~~t~eeId~~~~~~~l~~~~~ 972 (985)
++++||+++ +++|+++ +++.|+++++
T Consensus 341 ~~~iRis~~---~~~~i~~--~~~~l~~~~~ 366 (369)
T 3cq5_A 341 AGHLRTTIG---VPEENDA--FLDAAAEIIK 366 (369)
T ss_dssp TTEEEEECC---CHHHHHH--HHHHHHHHHT
T ss_pred CCeEEEEeC---CHHHHHH--HHHHHHHHHh
Confidence 479999996 8999999 7777777653
|
| >2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal 5'-phosphate, arginine metabolism, lysine biosynthesis, gabaculine; HET: PLP; 1.91A {Salmonella typhimurium} PDB: 2pb0_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=3.2e-18 Score=198.51 Aligned_cols=292 Identities=14% Similarity=0.123 Sum_probs=193.9
Q ss_pred HHHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEc-CCCCcccHHHHHHCCcE--------
Q 001989 633 MFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIP-VSAHGTNPATAAMCGMK-------- 703 (985)
Q Consensus 633 ~~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~-~~~Hg~~~~~a~~~G~~-------- 703 (985)
...++++++++++|.+. .++.+||++|+++++.+++.+...+|..++++||++ ..+|+.........|.+
T Consensus 100 ~~~~l~~~la~~~g~~~-v~~~~ggteA~~~al~~~~~~~~~~~~~g~~~vi~~~~~yh~~~~~~~~~~g~~~~~~~~~p 178 (420)
T 2pb2_A 100 PALRLGRKLIDATFAER-VLFMNSGTEANETAFKLARHYACVRHSPFKTKIIAFHNAFHGRSLFTVSVGGQPKYSDGFGP 178 (420)
T ss_dssp HHHHHHHHHHHHSSCSE-EEEESSHHHHHHHHHHHHHHHHHHHTCTTCCEEEEETTCCCCSSHHHHHHSSCHHHHTTSSS
T ss_pred HHHHHHHHHHhhCCCCe-EEEeCCHHHHHHHHHHHHHHHhhhccCCCCCEEEEEeCCcCCcCHHHHHhcCCccccccCCC
Confidence 45688899999998654 466788999998888887765444443233577775 46788776665554432
Q ss_pred ----EEEEcCCCCCCCCHHHHHHHHHhcCCCEEEEEEEcCC-Ccccc---ccCHHHHHHHHHHcCCEEEEEccccccccC
Q 001989 704 ----IVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPS-THGVY---EEGIDEICKIIHDNGGQVYMDGANMNAQVG 775 (985)
Q Consensus 704 ----vv~v~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~pn-~~G~i---~~di~eI~~la~~~galliVD~a~~~~~~~ 775 (985)
++.+|.+ |+++|+++++ +++++|+++.++ +.|++ ..++++|.++|+++|+++|+|++|. +++-
T Consensus 179 ~~~~~~~~~~~-----d~~~le~~i~---~~~~~vi~~p~~~~gG~~~~~~~~l~~l~~l~~~~gi~lI~Dev~~-g~~~ 249 (420)
T 2pb2_A 179 KPADIIHVPFN-----DLHAVKAVMD---DHTCAVVVEPIQGEGGVQAATPEFLKGLRDLCDEHQALLVFDEVQC-GMGR 249 (420)
T ss_dssp CCSCEEEECTT-----CHHHHHHHCC---TTEEEEEECSEETTTTSEECCHHHHHHHHHHHHHTTCEEEEECTTT-TTTT
T ss_pred CCCCeEEecCC-----CHHHHHHHhc---cCceEEEEeCCcCCCCeecCCHHHHHHHHHHHHHcCCEEEEEcCCc-Cccc
Confidence 6667653 8999999997 789999987664 45652 1279999999999999999999983 3321
Q ss_pred CCCCC-----ccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhh
Q 001989 776 LTSPG-----YIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSA 850 (985)
Q Consensus 776 l~~pg-----~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~ 850 (985)
...+. ...+|++++ +|+|+ +|.++|++++++++.+.+.....+ .++.+++
T Consensus 250 ~g~~~~~~~~~~~~diit~--sK~l~-----~G~~iG~~~~~~~l~~~l~~~~~~------------------~t~~~~~ 304 (420)
T 2pb2_A 250 TGDLFAYMHYGVTPDILTS--AKALG-----GGFPVSAMLTTQEIASAFHVGSHG------------------STYGGNP 304 (420)
T ss_dssp TSSSSHHHHHTCCCSEEEE--CGGGG-----TTSCCEEEEECHHHHTTCC----C------------------CEECCCH
T ss_pred CCcHHHHHhcCCCCCeEEe--ccccc-----CCCceEEEEEhHHHHHhhcCCCcC------------------cccCcCH
Confidence 11111 124798865 69884 356789999988776555321000 0112234
Q ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhcc---CCee--ecCCCCceeeEEEEEecCccccCCCCHHHHHH
Q 001989 851 LILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKH---YPIL--FRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAK 925 (985)
Q Consensus 851 ~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~g---~~l~--~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~ 925 (985)
..++++.+.|..+..+ +..++..++++++.++|++. ++.. ..+ .+.+ +.+.++. ..+.+..++.+
T Consensus 305 ~~~aa~~a~L~~~~~~---~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~-~g~~---~~v~~~~---~~~~~~~~l~~ 374 (420)
T 2pb2_A 305 LACAVAGAAFDIINTP---EVLQGIHTKRQQFVQHLQAIDEQFDIFSDIRG-MGLL---IGAELKP---KYKGRARDFLY 374 (420)
T ss_dssp HHHHHHHHHHHHHSSH---HHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEE-ETTE---EEEEECG---GGTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHhc---cHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEe-cceE---EEEEECC---CchHHHHHHHH
Confidence 4455566667766543 34456677888888888652 2321 111 1222 3345431 00125788999
Q ss_pred HHHHCCCccCCCCCCCCCEEEEeccCCCCHHHHHHHHccCChhHHHHhh
Q 001989 926 RLMDYGFHGPTMSWPVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRL 974 (985)
Q Consensus 926 ~L~~~Gi~~~~~~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~ 974 (985)
.|.++||.+.... ++.+|++|+...|++|||+ +++.|+++++++
T Consensus 375 ~l~~~Gi~v~~~~---~~~iRl~~~~~~t~eei~~--~~~~l~~~l~~~ 418 (420)
T 2pb2_A 375 AGAEAGVMVLNAG---ADVMRFAPSLVVEEADIHE--GMQRFAQAVGKV 418 (420)
T ss_dssp HHHHTTEECEESS---TTEEEECCCTTCCHHHHHH--HHHHHHHHHHHH
T ss_pred HHHHCCCEEEeCC---CCEEEEECCCCCCHHHHHH--HHHHHHHHHHHH
Confidence 9999999875432 4799999999999999999 888898888765
|
| >2c81_A Glutamine-2-deoxy-scyllo-inosose aminotransferase; SMAT, butirosin, aminoglycoside antibiotics; HET: PMP; 1.7A {Bacillus circulans} PDB: 2c7t_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=3.7e-19 Score=206.06 Aligned_cols=315 Identities=15% Similarity=0.126 Sum_probs=197.4
Q ss_pred HHHHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcCCC
Q 001989 632 EMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDA 711 (985)
Q Consensus 632 ~~~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~d~ 711 (985)
++.+++++.+++++|.+. .++.++|++|+..++.+++ ..++++||++...|..+...++..|++++.+++++
T Consensus 42 ~l~~~l~~~la~~~g~~~-~i~~~~gt~al~~~~~~~~-------~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~ 113 (418)
T 2c81_A 42 SMERKFAKAFADFNGVPY-CVPTTSGSTALMLALEALG-------IGEGDEVIVPSLTWIATATAVLNVNALPVFVDVEA 113 (418)
T ss_dssp CHHHHHHHHHHHHHTCSE-EEEESCHHHHHHHHHHHTT-------CCTTCEEEEESSSCTHHHHHHHHTTCEEEEECBCT
T ss_pred HHHHHHHHHHHHHhCCCc-EEEeCCHHHHHHHHHHHcC-------CCCcCEEEECCCccHhHHHHHHHcCCEEEEEecCC
Confidence 345688899999999884 4566778776654444331 14678999999888888777888999999999986
Q ss_pred -CCCCCHHHHHHHHHhcCCCEEEEEEEcCCCccccccCHHHHHHHHHHcCCEEEEEcccccccc-CCCCCCccCCcEEEe
Q 001989 712 -KGNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQV-GLTSPGYIGADVCHL 789 (985)
Q Consensus 712 -~g~iD~e~L~~~i~~~~~~t~~Vvv~~pn~~G~i~~di~eI~~la~~~galliVD~a~~~~~~-~l~~pg~~g~Di~~~ 789 (985)
++.+|+++|+++++ +++++|++++ .+|... |+++|.++|+++|+++|+|++|..+.. .....+.+ .|+.+.
T Consensus 114 ~~~~~d~~~l~~~i~---~~~~~v~~~~--~~G~~~-~~~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~-~~~~~~ 186 (418)
T 2c81_A 114 DTYCIDPQLIKSAIT---DKTKAIIPVH--LFGSMA-NMDEINEIAQEHNLFVIEDCAQSHGSVWNNQRAGTI-GDIGAF 186 (418)
T ss_dssp TTCSBCHHHHGGGCC---TTEEEECCBC--CTTCCC-CHHHHHHHHHHTTCEEEEECTTCTTCEETTEETTSS-SSEEEE
T ss_pred CCCCcCHHHHHHhhC---CCCeEEEEeC--CcCCcc-cHHHHHHHHHHCCCEEEEECcccccCccCCEecccc-cceEEE
Confidence 68899999999997 7899998876 468887 899999999999999999999864321 10112222 356655
Q ss_pred CC--cccccccCCCCCCceEEEEEc-ccccCcCCCC-ccccCCCC----CCCCCC--CCCCCCCC-cchhhhHHHHHHHH
Q 001989 790 NL--HKTFCIPHGGGGPGMGPIGVK-KHLAPFLPSH-PVVSTGGI----PAPEKS--QPLGTIAA-APWGSALILPISYT 858 (985)
Q Consensus 790 s~--hK~l~~p~g~GGPg~G~i~~~-~~l~~~lp~~-~~g~~~~~----~~~~~~--~~~~~i~s-~~~g~~~~~~~a~a 858 (985)
++ ||+|+ +| .+|+++++ +++.+.+... ..+..... .+.... .++..+.+ +..... +.++
T Consensus 187 s~s~~K~~~-----~g-~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~--~~aa-- 256 (418)
T 2c81_A 187 SCQQGKVLT-----AG-EGGIIVTKNPRLFELIQQLRADSRVYCDDSSELMHGDMQLVKKGDIQGSNYCLSE--FQSA-- 256 (418)
T ss_dssp ECCTTSSSC-----SS-SCEEEEESCHHHHHHHHHHHBTTEEECSCGGGCCTTCBSEEECCSSCCCBCCCCH--HHHH--
T ss_pred eccCCcccC-----CC-CeEEEEECCHHHHHHHHHHHHhCccccccccccccchhhccccccccCcCCCcCH--HHHH--
Confidence 55 99984 23 67888885 4543322100 00100000 000000 00001110 000011 1111
Q ss_pred HHHHhcHHHHHHHHHHHHHHHHHHHHHhhccCCeeec-CCCC---ceeeEEEEEecCccccCCCCHHHHHHHHHHC-CCc
Q 001989 859 YIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFR-GVNG---TVAHEFIVDLRGLKNTAGIEPEDVAKRLMDY-GFH 933 (985)
Q Consensus 859 ~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~g~~l~~~-~~~~---~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~-Gi~ 933 (985)
+.....+++++..++..++++++.+.|++..++... .+.+ ..++.+.+.++.. ...+.+..++.+.|.++ ||.
T Consensus 257 -~~~~~l~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~L~~~~gI~ 334 (418)
T 2c81_A 257 -ILLDQLQELDDKNAIREKNAMFLNDALSKIDGIKVMKRPPQVSRQTYYGYVFRFDPV-KFGGLNADQFCEILREKLNMG 334 (418)
T ss_dssp -HHHHHHTTHHHHHHHHHHHHHHHHHHHTTSTTEEECCCCTTEEECCCSEEEEEECGG-GTTTCCHHHHHHHHHHHHTCC
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcccCCCCCCCcccccEEEEEEEccc-cccccCHHHHHHHHHHcCCCC
Confidence 111122446666677778889999999763233222 1212 1122344555410 00145788999999999 998
Q ss_pred ---cCCCCCC------------------------------C-------CCEEEEeccCCC-CHHHHHHHHccCChhHHHH
Q 001989 934 ---GPTMSWP------------------------------V-------PGTLMIEPTESE-SKSWTGIVMLSSPSEKKLH 972 (985)
Q Consensus 934 ---~~~~~~p------------------------------~-------~~~lris~t~~~-t~eeId~~~~~~~l~~~~~ 972 (985)
+.....| . .+.+|++++..+ |+||||+ ++++|+++++
T Consensus 335 ~~~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~gt~edi~~--~~~~l~~~~~ 412 (418)
T 2c81_A 335 TFYLHPPYLPVHKNPLFCPWTKNRYLKSVRKTEAYWRGLHYPVSERASGQSIVIHHAILLAEPSHLSL--LVDAVAELAR 412 (418)
T ss_dssp TTTEECCCCCGGGCTTCCGGGCTTSCHHHHCCHHHHHTCCCHHHHHHHHHEEEEEGGGGGSCHHHHHH--HHHHHHHHHH
T ss_pred cccccccccccccCchhcccccccccccccccccccccCCChHHHHHHhCEEEecCCccCCCHHHHHH--HHHHHHHHHH
Confidence 6432111 0 148999999999 9999999 8899998887
Q ss_pred hhc
Q 001989 973 RLK 975 (985)
Q Consensus 973 ~~~ 975 (985)
+++
T Consensus 413 ~~~ 415 (418)
T 2c81_A 413 KFC 415 (418)
T ss_dssp TTC
T ss_pred hhc
Confidence 654
|
| >3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent transferase-like, structural genomics, joint C structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=99.80 E-value=3.5e-18 Score=191.24 Aligned_cols=276 Identities=11% Similarity=0.088 Sum_probs=186.2
Q ss_pred HHHHHHHHHHHhCCCccceecCcHHH-HHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcCCCC
Q 001989 634 FNNLGEWLCTITGFDSFSLQPNAGAA-GEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAK 712 (985)
Q Consensus 634 ~~e~~~~la~l~G~~~~~~~~~sGa~-a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~d~~ 712 (985)
..++++.+++++|.+...+..++|++ +.. .+++. . ++++|+++++.|..+...++..|++++.+|.+++
T Consensus 53 ~~~lr~~la~~~~~~~~~i~~t~G~~~~l~---~~~~~------~-~gd~vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~ 122 (337)
T 3p1t_A 53 EPRVMRKLAEHFSCPEDNLMLVRGIDECFD---RISAE------F-SSMRFVTAWPGFDGYRARIAVSGLRHFEIGLTDD 122 (337)
T ss_dssp HHHHHHHHHHHHTSCGGGEEEESHHHHHHH---HHHHH------S-TTSEEEEESSSCSHHHHHHTTSCCEEEEECBCTT
T ss_pred hHHHHHHHHHHhCcCHHHEEEeCCHHHHHH---HHHHh------c-CCCeEEEeCCCcHHHHHHHHHcCCEEEEecCCCC
Confidence 45788899999999875555555544 442 33332 1 5689999988887777778889999999999888
Q ss_pred CCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCC--CCCCccCCcEEEe
Q 001989 713 GNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGL--TSPGYIGADVCHL 789 (985)
Q Consensus 713 g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l--~~pg~~g~Di~~~ 789 (985)
+.+|+++|+++ .++++|++++| |++|.+. |+++|.++|+++++ +++|+++.. ++.. ..+...+.++++.
T Consensus 123 ~~~d~~~l~~~-----~~~~~v~i~~p~nptG~~~-~~~~l~~l~~~~~~-~ivDea~~~-~~~~~~~~~~~~~~~i~~~ 194 (337)
T 3p1t_A 123 LLLDPNDLAQV-----SRDDCVVLANPSNPTGQAL-SAGELDQLRQRAGK-LLIDETYVD-YSSFRARGLAYGENELVFR 194 (337)
T ss_dssp SSBCHHHHTTC-----CTTEEEEEESSCTTTCCCC-CHHHHHHHHHHCSE-EEEECTTGG-GSSCSSSCCCCBTTEEEEE
T ss_pred CCCCHHHHHhh-----cCCCEEEEeCCCCCCCCCC-CHHHHHHHHHhCCc-EEEECCChh-hccccccccccCCCEEEEe
Confidence 89999998864 45789999999 5799998 89999999999997 667998742 2211 1223345679999
Q ss_pred CCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHHHH
Q 001989 790 NLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLT 869 (985)
Q Consensus 790 s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl~ 869 (985)
|++|+|+. .|.++|++++++++.+.+.... ...+.+ .....++.+++.. .+.+.
T Consensus 195 S~sK~~g~----~G~r~G~~~~~~~~~~~l~~~~--------------~~~~~~------~~~~~a~~~~l~~--~~~~~ 248 (337)
T 3p1t_A 195 SFSKSYGL----AGLRLGALFGPSELIAAMKRKQ--------------WFCNVG------TLDLHALEAALDN--DRARE 248 (337)
T ss_dssp ESSSTTCC----TTTCCEEEECCHHHHHHHHTTS--------------CTTCSC------HHHHHHHHHHHTC--HHHHH
T ss_pred eCchhccC----cchheEEEEeCHHHHHHHHhhc--------------CCCCCC------HHHHHHHHHHhCC--HHHHH
Confidence 99999854 3678899998877655442110 011111 1112222233331 23455
Q ss_pred HHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCC-CCCCCCEEEE
Q 001989 870 EASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTM-SWPVPGTLMI 947 (985)
Q Consensus 870 ~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~-~~p~~~~lri 947 (985)
+..++..++++++.+.|++ ++.+. .+.+.+ +.+... +..++.+.|.++||.+... .+..++++||
T Consensus 249 ~~~~~~~~~~~~l~~~L~~~g~~~~--~~~~~~---~~~~~~--------~~~~~~~~l~~~gi~v~~g~~~~~~~~iRi 315 (337)
T 3p1t_A 249 AHIAKTLAQRRRVADALRGLGYRVA--SSEANF---VLVENA--------AGERTLRFLRERGIQVKDAGQFGLHHHIRI 315 (337)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCBC--CCSSSE---EEEECT--------TTHHHHHHHHHTTEECEEGGGGTCCSEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHCcCEEC--CCCCeE---EEEEcC--------CHHHHHHHHHHCCeEEEECccCCCCCeEEE
Confidence 5666677788899999987 44432 222222 233332 3467888999999987542 2334589999
Q ss_pred eccCCCCHHHHHHHHccCChhHHH
Q 001989 948 EPTESESKSWTGIVMLSSPSEKKL 971 (985)
Q Consensus 948 s~t~~~t~eeId~~~~~~~l~~~~ 971 (985)
+++ +++|+++ ++++|+++.
T Consensus 316 s~~---~~~~~~~--l~~al~~~~ 334 (337)
T 3p1t_A 316 SIG---REEDNDR--LLAALAEYS 334 (337)
T ss_dssp ECC---CHHHHHH--HHHHHHHHT
T ss_pred ecC---CHHHHHH--HHHHHHHHh
Confidence 985 8999999 667776654
|
| >4adb_A Succinylornithine transaminase; transferase, PLP enzymes, aminotransferase; HET: PLP; 2.20A {Escherichia coli} PDB: 4adc_A* 4add_A* 4ade_A | Back alignment and structure |
|---|
Probab=99.79 E-value=3.6e-18 Score=196.43 Aligned_cols=295 Identities=14% Similarity=0.115 Sum_probs=192.5
Q ss_pred HHHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEE-cCCCCcccHHHHHHCC----------
Q 001989 633 MFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCII-PVSAHGTNPATAAMCG---------- 701 (985)
Q Consensus 633 ~~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv-~~~~Hg~~~~~a~~~G---------- 701 (985)
...++++++++++|.+. .++.++|++|++.++.+++.+...+|..++++||+ ...+|+.........+
T Consensus 82 ~~~~l~~~la~~~~~~~-v~~~~gg~~a~~~al~~~~~~~~~~~~~g~~~vi~~~~~y~~~~~~~~~~~~~~~~~~~~~~ 160 (406)
T 4adb_A 82 PVLRLAKKLIDATFADR-VFFCNSGAEANEAALKLARKFAHDRYGSHKSGIVAFKNAFHGRTLFTVSAGGQPAYSQDFAP 160 (406)
T ss_dssp HHHHHHHHHHHHSSCSE-EEEESSHHHHHHHHHHHHHHHHHHHTCTTCCEEEEETTCCCCSSHHHHHHSSCGGGTGGGCS
T ss_pred HHHHHHHHHHhhCCCCe-EEEeCcHHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCCcHHHhhccCCccccccCCC
Confidence 35688899999998873 45667888888877777765544444334477777 4556776555544333
Q ss_pred --cEEEEEcCCCCCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccc-c--c-cCHHHHHHHHHHcCCEEEEEcccccccc
Q 001989 702 --MKIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGV-Y--E-EGIDEICKIIHDNGGQVYMDGANMNAQV 774 (985)
Q Consensus 702 --~~vv~v~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~-i--~-~di~eI~~la~~~galliVD~a~~~~~~ 774 (985)
.++..+|. .|+++|+++++ +++++|+++ | |.+|. + . .++++|.++|+++|+++|+|++|. +++
T Consensus 161 ~~~~~~~~~~-----~d~~~l~~~l~---~~~~~v~~~-p~np~g~~~~~~~~~l~~l~~l~~~~~~~li~De~~~-~~~ 230 (406)
T 4adb_A 161 LPADIRHAAY-----NDINSASALID---DSTCAVIVE-PIQGEGGVVPASNAFLQGLRELCNRHNALLIFDEVQT-GVG 230 (406)
T ss_dssp CCSSEEEECT-----TCHHHHHTTCS---TTEEEEEEC-SEETTTTSEECCHHHHHHHHHHHHHTTCEEEEECTTT-TTT
T ss_pred CCCCceEeCC-----CcHHHHHHHhc---CCeEEEEEe-CCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEecccc-CCC
Confidence 35556665 38999999997 789999998 7 45553 2 1 269999999999999999999984 222
Q ss_pred CCCCC-----CccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhh
Q 001989 775 GLTSP-----GYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGS 849 (985)
Q Consensus 775 ~l~~p-----g~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~ 849 (985)
-...+ .....|++++ +|+|+ +|.++|++++++++.+.+.....+ . +.+. +
T Consensus 231 ~~g~~~~~~~~~~~~d~~t~--sK~~~-----~G~r~G~~~~~~~~~~~~~~~~~~------------~--~~~~----~ 285 (406)
T 4adb_A 231 RTGELYAYMHYGVTPDLLTT--AKALG-----GGFPVGALLATEECARVMTVGTHG------------T--TYGG----N 285 (406)
T ss_dssp TTSSSSHHHHHTCCCSEEEE--CGGGG-----TTSCCEEEEECHHHHHTCCTTSSC------------C--SSTT----C
T ss_pred ccchhHHHHhcCCCCCEEEe--chhhc-----CCCCeEEEEEcHHHHhhhccCCcC------------C--CCCC----C
Confidence 11111 1234688865 79985 356789999998876655322100 0 1111 2
Q ss_pred hHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhcc---CCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHH
Q 001989 850 ALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKH---YPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKR 926 (985)
Q Consensus 850 ~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~g---~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~ 926 (985)
+..+.++.+.+..+.. .+..++..++++++.++|++. +.+....+ + ....+.+.++. ....+..++.+.
T Consensus 286 ~~~~~a~~~~l~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~-~-~g~~~~~~~~~---~~~~~~~~~~~~ 357 (406)
T 4adb_A 286 PLASAVAGKVLELINT---PEMLNGVKQRHDWFVERLNTINHRYGLFSEVR-G-LGLLIGCVLNA---DYAGQAKQISQE 357 (406)
T ss_dssp HHHHHHHHHHHHHHSS---HHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEE-E-ETTEEEEEECT---TTTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh---cCHHHHHHHHHHHHHHHHHHHHHhCCCceEEE-E-EEEEEEEEEeC---CcHHHHHHHHHH
Confidence 3334444555665543 344556778888888888752 12111000 0 01113344431 001257899999
Q ss_pred HHHCCCccCCCCCCCCCEEEEeccCCCCHHHHHHHHccCChhHHHHhhcc
Q 001989 927 LMDYGFHGPTMSWPVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRLKM 976 (985)
Q Consensus 927 L~~~Gi~~~~~~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~~~ 976 (985)
|.++|+.+.... .+++|++++..+|++||++ +++.|++++++++.
T Consensus 358 l~~~gi~v~~~~---~~~iRi~~~~~~~~e~i~~--~~~~l~~~l~~~~~ 402 (406)
T 4adb_A 358 AAKAGVMVLIAG---GNVVRFAPALNVSEEEVTT--GLDRFAAACEHFVS 402 (406)
T ss_dssp HHHTTEECEESS---TTEEEECCCTTCCHHHHHH--HHHHHHHHHHHHHC
T ss_pred HHHCCcEEeecC---CCeEEEECCCCCCHHHHHH--HHHHHHHHHHHHHh
Confidence 999999875433 4799999999999999999 88999999988764
|
| >2oga_A Transaminase; PLP-dependent enzyme, desosamine, deoxysugars, antibiotics, hydrolase; HET: PGU; 2.05A {Streptomyces venezuelae} PDB: 2oge_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=2.6e-18 Score=197.76 Aligned_cols=301 Identities=13% Similarity=0.062 Sum_probs=192.0
Q ss_pred HHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcCCC-C
Q 001989 634 FNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDA-K 712 (985)
Q Consensus 634 ~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~d~-~ 712 (985)
..++++.+++++|.+. .++.++|++|+..++.+++ ..++++|+++...|..+...++..|++++.+|+++ +
T Consensus 65 ~~~l~~~la~~~~~~~-~v~~~~Gt~a~~~~l~~~~-------~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 136 (399)
T 2oga_A 65 LEGFEAEFAAYCETDH-AVGVNSGMDALQLALRGLG-------IGPGDEVIVPSHTYIASWLAVSATGATPVPVEPHEDH 136 (399)
T ss_dssp HHHHHHHHHHHTTSSE-EEEESCHHHHHHHHHHHTT-------CCTTCEEEEESSSCTHHHHHHHHTTCEEEEECBCSSS
T ss_pred HHHHHHHHHHHHCCCe-EEEecCHHHHHHHHHHHhC-------CCCcCEEEECCCccHHHHHHHHHCCCEEEEEecCCCC
Confidence 4578899999999874 4566778877655544331 14678999998888777777888999999999976 4
Q ss_pred CCCCHHHHHHHHHhcCCCEEEEEEEcCCCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCccC--CcEEEeC
Q 001989 713 GNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIG--ADVCHLN 790 (985)
Q Consensus 713 g~iD~e~L~~~i~~~~~~t~~Vvv~~pn~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~g--~Di~~~s 790 (985)
+.+|+++|+++++ +++++|++++ .+|.+. |+++|.++|+++|+++|+|++|..+.. . ....++ .|++++|
T Consensus 137 ~~~d~~~l~~~i~---~~~~~v~~~n--~tG~~~-~l~~i~~l~~~~~~~li~Dea~~~g~~-~-~~~~~~~~~di~~~S 208 (399)
T 2oga_A 137 PTLDPLLVEKAIT---PRTRALLPVH--LYGHPA-DMDALRELADRHGLHIVEDAAQAHGAR-Y-RGRRIGAGSSVAAFS 208 (399)
T ss_dssp SSBCHHHHHHHCC---TTEEEECCBC--GGGCCC-CHHHHHHHHHHHTCEECEECTTCTTCE-E-TTEETTCTTCEEEEE
T ss_pred CCcCHHHHHHhcC---CCCeEEEEeC--CcCCcc-CHHHHHHHHHHcCCEEEEECcccccCc-c-CCeecccccCEEEEe
Confidence 7899999999997 6888888654 579988 899999999999999999999854321 1 111233 6999999
Q ss_pred Cc--ccccccCCCCCCceEEEEEc-ccccCcCCCC-ccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHH
Q 001989 791 LH--KTFCIPHGGGGPGMGPIGVK-KHLAPFLPSH-PVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSK 866 (985)
Q Consensus 791 ~h--K~l~~p~g~GGPg~G~i~~~-~~l~~~lp~~-~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~e 866 (985)
+| |+|+.| | .+|+++++ +++.+.+... ..|.... ... ...+. +... +...++++.+.+.
T Consensus 209 ~~~sK~~~~~----G-~~g~~~~~~~~~~~~l~~~~~~g~~~~-~~~-~~~g~-~~~~----~~~~~a~~~~~l~----- 271 (399)
T 2oga_A 209 FYPGKNLGCF----G-DGGAVVTGDPELAERLRMLRNYGSRQK-YSH-ETKGT-NSRL----DEMQAAVLRIRLA----- 271 (399)
T ss_dssp CCTTSSSCCS----S-CCEEEEESCHHHHHHHHHHHBTTCSST-TCC-CSCCC-BCCC----CHHHHHHHHHHHH-----
T ss_pred CCCCccCCcC----C-ceEEEEeCCHHHHHHHHHHHhcCcccc-ccc-ccccc-CCCc----CHHHHHHHHHHHH-----
Confidence 95 988422 3 46777775 5554322110 0011000 000 00000 0000 1222222223332
Q ss_pred HHHHHHHHHHHHHHHHHHHhhc--cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCC-CCC--
Q 001989 867 GLTEASKIAILNANYMAKRLEK--HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMS-WPV-- 941 (985)
Q Consensus 867 Gl~~~~~~~~~~a~~l~~~L~~--g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~-~p~-- 941 (985)
.+.+..++..++++++.+.|++ ++.+...+. .....-+.+.+. ..+..++.+.|.++||.+.... .|.
T Consensus 272 ~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~-~~~~~~~~~~~~------~~~~~~l~~~L~~~gI~v~~~~~~~~~~ 344 (399)
T 2oga_A 272 HLDSWNGRRSALAAEYLSGLAGLPGIGLPVTAP-DTDPVWHLFTVR------TERRDELRSHLDARGIDTLTHYPVPVHL 344 (399)
T ss_dssp THHHHHHHHHHHHHHHHHHTTTCTTCBCCCCCT-TEECCCSSEEEE------CSSHHHHHHHHHHTTBCCBCSCSSCGGG
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCccccCCCC-CCcceeEEEEEE------CCCHHHHHHHHHHCCCceecCCCCcccc
Confidence 2344455667778899999976 333321111 111100012222 2367889999999999875421 110
Q ss_pred ---------------------CCEEEEeccCCCCHHHHHHHHccCChhHHHHhhcc
Q 001989 942 ---------------------PGTLMIEPTESESKSWTGIVMLSSPSEKKLHRLKM 976 (985)
Q Consensus 942 ---------------------~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~~~ 976 (985)
.+.+||+++..+|++||++ ++++|++++++++.
T Consensus 345 ~~~~~~~~~~~~~~p~~~~~~~~~lRi~~~~~~t~edi~~--~~~~l~~~~~~l~~ 398 (399)
T 2oga_A 345 SPAYAGEAPPEGSLPRAESFARQVLSLPIGPHLERPQALR--VIDAVREWAERVDQ 398 (399)
T ss_dssp SHHHHTTSCCTTSCHHHHHHHHHEEEECCSTTCCHHHHHH--HHHHHHHHHHSCC-
T ss_pred chhhcccCCCCCCChhHHHHHhCEEEccCCCCCCHHHHHH--HHHHHHHHHHHhcc
Confidence 1579999999999999999 88999988876643
|
| >3h7f_A Serine hydroxymethyltransferase 1; cytoplasm, one-carbon metabolism, pyridoxal phosphate, structural genomics; HET: LLP; 1.50A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.79 E-value=3.9e-18 Score=199.47 Aligned_cols=297 Identities=19% Similarity=0.174 Sum_probs=192.5
Q ss_pred HHHHHH-HHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHH-----HHHCCcEEEE
Q 001989 633 MFNNLG-EWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPAT-----AAMCGMKIVS 706 (985)
Q Consensus 633 ~~~e~~-~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~-----a~~~G~~vv~ 706 (985)
.++++. +++++++|.+.+.++++||++|+++++.++. .++|+|++++..|+.+... ....++.++.
T Consensus 91 ~~e~~a~~~la~~~g~~~~~v~~~sGs~a~~~a~~~~~--------~~Gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~~~ 162 (447)
T 3h7f_A 91 VVENLARDRAKALFGAEFANVQPHSGAQANAAVLHALM--------SPGERLLGLDLANGGHLTHGMRLNFSGKLYENGF 162 (447)
T ss_dssp HHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHHHHHHC--------CTTCEEEEECGGGTCCGGGTCTTSHHHHSSEEEE
T ss_pred HHHHHHHHHHHHHcCCCceEEEeCCHHHHHHHHHHHhc--------CCCCEEEecCcccccccchhhhhhhcCCeeEEEE
Confidence 344555 8999999998876768889988766655442 4789999988877663211 2224567777
Q ss_pred EcCC-CCCCCCHHHHHHHHHhcCCCEEEEEEEcCCCccccccCHHHHHHHHHHcCCEEEEEcccccccc--C-CCCCCcc
Q 001989 707 VGTD-AKGNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQV--G-LTSPGYI 782 (985)
Q Consensus 707 v~~d-~~g~iD~e~L~~~i~~~~~~t~~Vvv~~pn~~G~i~~di~eI~~la~~~galliVD~a~~~~~~--~-l~~pg~~ 782 (985)
++++ +++.+|+++|++++++ .++++|++++|++ +... |+++|+++|+++|+++++|++|..++. + ...+. .
T Consensus 163 ~~~~~~~~~~d~~~l~~~i~~--~~~~~i~~~~~~~-~~~~-~l~~i~~l~~~~g~lli~Dea~~~g~~~~g~~~~~~-~ 237 (447)
T 3h7f_A 163 YGVDPATHLIDMDAVRATALE--FRPKVIIAGWSAY-PRVL-DFAAFRSIADEVGAKLLVDMAHFAGLVAAGLHPSPV-P 237 (447)
T ss_dssp ECCCTTTCSCCHHHHHHHHHH--HCCSEEEEECSSC-CSCC-CHHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCST-T
T ss_pred cCcCcccCCcCHHHHHHHHHh--cCCeEEEEcCCCC-CCcc-CHHHHHHHHHHcCCEEEEECCchhhhhcCCCCCCCC-C
Confidence 8876 4578999999999963 3566788877754 2222 799999999999999999999854331 1 11222 3
Q ss_pred CCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHH
Q 001989 783 GADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAM 862 (985)
Q Consensus 783 g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~ 862 (985)
++|+++.++||+| +||.+|++++++++.+.+...... . ...+. . ... ++++.+.+..
T Consensus 238 ~~di~~~s~sK~l------~G~~gG~i~~~~~~~~~l~~~~~~------------~--~~~~~-~-~~~-~~a~~~a~~~ 294 (447)
T 3h7f_A 238 HADVVSTTVHKTL------GGGRSGLIVGKQQYAKAINSAVFP------------G--QQGGP-L-MHV-IAGKAVALKI 294 (447)
T ss_dssp TCSEEEEESSGGG------CCCSCEEEEECGGGHHHHHHHHTT------------T--TCSSC-C-HHH-HHHHHHHHHH
T ss_pred CCcEEEecCCcCC------CCCCeEEEEECHHHHHHHhhhcCC------------c--ccCCc-c-HHH-HHHHHHHHHH
Confidence 5799999999998 468779999887665443211000 0 00110 0 111 1122233344
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHHhhcc------CCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccC-
Q 001989 863 MGSKGLTEASKIAILNANYMAKRLEKH------YPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGP- 935 (985)
Q Consensus 863 lg~eGl~~~~~~~~~~a~~l~~~L~~g------~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~- 935 (985)
+..+++.+..++..++++++.+.|++. +.+...+. . .+.+.++++. .+.+...+.+.|.++||.+.
T Consensus 295 ~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~g~~~~~~~~-~--~~~~~~~~~~----~~~~~~~~~~~l~~~GI~v~~ 367 (447)
T 3h7f_A 295 AATPEFADRQRRTLSGARIIADRLMAPDVAKAGVSVVSGGT-D--VHLVLVDLRD----SPLDGQAAEDLLHEVGITVNR 367 (447)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHHHHTSHHHHHTTCEEGGGSC-S--SSEEEEECTT----SSCCHHHHHHHHHHTTEECBC
T ss_pred hhCHHHHHHHHHHHHHHHHHHHHHHhccccCCCeEEecCCC-C--CCEEEEEcCC----CCCCHHHHHHHHHHCCeEEec
Confidence 444467778888899999999999753 44432111 1 2234566642 24567788888888899876
Q ss_pred ---CC--CCC-CCCEEEEeccCC----CCHHHHHHHHccCChhHHHHhh
Q 001989 936 ---TM--SWP-VPGTLMIEPTES----ESKSWTGIVMLSSPSEKKLHRL 974 (985)
Q Consensus 936 ---~~--~~p-~~~~lris~t~~----~t~eeId~~~~~~~l~~~~~~~ 974 (985)
.. ..| .++.+||+++.. .+++||++ ++++|++++...
T Consensus 368 ~~i~~~~~~p~~~~~lRig~~~~~~~~~~~eei~~--~~~~l~~~l~~~ 414 (447)
T 3h7f_A 368 NAVPNDPRPPMVTSGLRIGTPALATRGFGDTEFTE--VADIIATALATG 414 (447)
T ss_dssp -------------CEEEEECHHHHHHTCCHHHHHH--HHHHHHHHHHSG
T ss_pred ccCCCCCCCCCCCCceeccCHHHhhCCCCHHHHHH--HHHHHHHHHhcc
Confidence 22 122 357899998754 67999999 777777776543
|
| >2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=1e-18 Score=198.28 Aligned_cols=280 Identities=17% Similarity=0.180 Sum_probs=199.7
Q ss_pred hHHHHHHHHHHH-HHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEe
Q 001989 208 GRLESLLNFQTM-IADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVS 286 (985)
Q Consensus 208 g~l~~i~e~q~~-ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v 286 (985)
+..+.+.++++. +|+++|.+ ++.+++|+|.+++.++.++ . ++||+|++++..|+++...++ ..|++++.+
T Consensus 50 ~~~~~~~~l~~~~la~~~~~~--~v~~~~g~t~a~~~~~~~~-~--~~gd~vl~~~~~~~~~~~~~~----~~g~~~~~v 120 (371)
T 2e7j_A 50 IKTPPIHDFIHNQLPKFLGCD--VARVTNGAREAKFAVMHSL-A--KKDAWVVMDENCHYSSYVAAE----RAGLNIALV 120 (371)
T ss_dssp ---CCHHHHHHTHHHHHTTSS--EEEEESSHHHHHHHHHHHH-C--CTTCEEEEETTCCHHHHHHHH----HTTCEEEEE
T ss_pred hHHHHHHHHHHHHHHHHcCCC--EEEEeCChHHHHHHHHHHH-h--CCCCEEEEccCcchHHHHHHH----HcCCeEEEe
Confidence 344556778899 99999988 7888899998888777665 2 388999999999999998864 358888888
Q ss_pred C--ch--------hhhc-cC-----CCEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCC-CCCccc
Q 001989 287 D--LK--------DIDY-KS-----GDVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILK-PPGELG 348 (985)
Q Consensus 287 ~--~~--------~l~~-l~-----~~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~-~~~~~G 348 (985)
+ .+ +|++ ++ +++++|++.+| |++|.+.|+++|.++|+++|+++++|. ..+.+... +..++|
T Consensus 121 ~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~v~~~~~~nptG~~~~~~~i~~~~~~~~~~li~D~-a~~~~~~~~~~~~~~ 199 (371)
T 2e7j_A 121 PKTDYPDYAITPENFAQTIEETKKRGEVVLALITYPDGNYGNLPDVKKIAKVCSEYDVPLLVNG-AYAIGRMPVSLKEIG 199 (371)
T ss_dssp CCCCTTTCCCCHHHHHHHHHHHTTTSCEEEEEEESSCTTTCCCCCHHHHHHHHHTTTCCEEEEC-TTTBTTBCCCHHHHT
T ss_pred ecccCCCCCcCHHHHHHHHHhhcccCCeEEEEEECCCCCCcccCCHHHHHHHHHHcCCeEEEEC-ccccCCCCCChhhcC
Confidence 7 43 4555 55 68999999998 789999999999999999999999953 55555442 335678
Q ss_pred ceEEEecC-ccccccCCCCCCcEEEEEEchhhHhc-CCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHH
Q 001989 349 ADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRM-MPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQAL 426 (985)
Q Consensus 349 aDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~-lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l 426 (985)
+|++++|. |+|++| +++|++++++++++. +.....|. .. ....+.+|+|. ...
T Consensus 200 ~di~~~s~sK~~~~~-----~~~G~~~~~~~~~~~~~~~~~~~~------~~-----------~~~~~~~~~~~---~~~ 254 (371)
T 2e7j_A 200 ADFIVGSGHKSMAAS-----GPIGVMGMKEEWAEIVLRRSEKYK------NK-----------EVELLGCTARG---ATI 254 (371)
T ss_dssp CSEEEEEHHHHSSCC-----SSCEEEEECTTTTTTTTCBCSSCT------TS-----------BGGGTTCCCCS---HHH
T ss_pred CCEEEecCCcCCCCC-----CCcEEEEEechhhhhhccccccCc------cc-----------ccccccCCcCH---HHH
Confidence 99999998 778643 357999999887776 63211110 00 00112345554 233
Q ss_pred HHHHHHHHHHHhCcchHHHHHHHH--HHHHHHHHHHHhcCCCeEEcCCC--CcceEEEecCCHHHHHHHHHHcCceeeee
Q 001989 427 LANMAAMYAVYHGPEGLKTIAQRV--HGLAGTFALGLKKLGTVEVQGLP--FFDTVKVKCADAHAIASAAYKIEMNLRVV 502 (985)
Q Consensus 427 ~a~~aa~~l~~~g~~Gl~~i~~~~--~~~a~~l~~~L~~~g~~~~~~~~--~~~~~~~~~~~~~~v~~~L~~~GI~~~~~ 502 (985)
.++.+++ .++.. ++.++. .++++++.+.|+++| +++..+. ...-+.+..++..++.+.|.++||.+...
T Consensus 255 ~a~~~~l--~~~~~----~~~~~~~~~~~~~~l~~~L~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~ 327 (371)
T 2e7j_A 255 ITLMASF--PHVRE----RIKRWDEEVEKARRFAAEMEKLG-IKQLGDNPHNHDLMFFHAEVLYEISKKAKGGRFFLYRE 327 (371)
T ss_dssp HHHHHHH--HHHHH----HGGGHHHHHHHHHHHHHHHHHTT-CEEESSSSCCSSEEEEECHHHHHHHHHSSSGGGHHHHH
T ss_pred HHHHHHH--HHHHH----HHHHHHHHHHHHHHHHHHHHHcC-cEEecCCCccCceEEEECCCHHHHHHHHHHCCEEEEec
Confidence 3433443 22211 566777 888999999999886 8877432 23345555434677888888889976431
Q ss_pred ---------cCCeEE-EEeccC-CCHHHHHHHHHHHhC
Q 001989 503 ---------DSNTVT-ASFDET-TTLEDVDKLFIVFAG 529 (985)
Q Consensus 503 ---------~~~~lr-is~t~~-~t~edId~li~aL~~ 529 (985)
.++.+| ++++.+ +|++|+++++++|.+
T Consensus 328 ~~~~~~~g~~~~~iRii~~~~~~~~~~~i~~~~~~l~~ 365 (371)
T 2e7j_A 328 LKSRKIHGIKPGLTRYFKLSTYGLSDEEVDYVLNAFKE 365 (371)
T ss_dssp HHHTTEECSCTTCCSEEEEECTTCCHHHHHHHHHHHHH
T ss_pred cccccccCCCCCceEEEEeeccCCCHHHHHHHHHHHHH
Confidence 157899 999998 999999999999874
|
| >1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC, malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4 PDB: 3lg0_A 3ntj_A | Back alignment and structure |
|---|
Probab=99.79 E-value=7.1e-18 Score=196.45 Aligned_cols=294 Identities=14% Similarity=0.159 Sum_probs=184.4
Q ss_pred HHHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHH-hcCCCCC-CEEEEcC-CCCcccHHHHHHCC--------
Q 001989 633 MFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHK-ARGDHHR-NVCIIPV-SAHGTNPATAAMCG-------- 701 (985)
Q Consensus 633 ~~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~-~~g~~~~-~~IIv~~-~~Hg~~~~~a~~~G-------- 701 (985)
...++++.+++++|.+. .++.+||++|+++++.+++.|.. .+|..++ ++||+++ .+|+.........|
T Consensus 108 ~~~~l~~~la~~~g~~~-v~~~~sGseA~~~al~~a~~~~~~~~g~~~gr~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~ 186 (433)
T 1z7d_A 108 PLGICERYLTNLLGYDK-VLMMNTGAEANETAYKLCRKWGYEVKKIPENMAKIVVCKNNFSGRTLGCISASTTKKCTSNF 186 (433)
T ss_dssp HHHHHHHHHHHHHTCSE-EEEESSHHHHHHHHHHHHHHHHHHTSCCCTTCCEEEEETTC---------------------
T ss_pred HHHHHHHHHHhhcCCCe-EEEeCCHHHHHHHHHHHHHHHhhhccCCCCCCCeEEEEeCCcCCcchhhhcccCCccccccC
Confidence 35578889999998654 46678899999888887765432 2222233 7888755 67776544433333
Q ss_pred ----cEEEEEcCCCCCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccc---cCHHHHHHHHHHcCCEEEEEccccccc
Q 001989 702 ----MKIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYE---EGIDEICKIIHDNGGQVYMDGANMNAQ 773 (985)
Q Consensus 702 ----~~vv~v~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~---~di~eI~~la~~~galliVD~a~~~~~ 773 (985)
.+++.+|.+ |+++|+++++ .+++++|+++.. +.+|++. .++++|.++|+++|+++|+|++|. ++
T Consensus 187 ~p~~~~v~~~~~~-----d~~~le~~l~--~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~-g~ 258 (433)
T 1z7d_A 187 GPFAPQFSKVPYD-----DLEALEEELK--DPNVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQT-GL 258 (433)
T ss_dssp -----CEEEECTT-----CHHHHHHHHT--STTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTT-TT
T ss_pred CCCCCCeEEeCCC-----CHHHHHHHhC--CCCEEEEEEECCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCcc-CC
Confidence 345666653 8999999994 267888776543 3478753 269999999999999999999984 33
Q ss_pred cCCCCC---C--ccCCcEEEeCCcccccccCCCCC-CceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcch
Q 001989 774 VGLTSP---G--YIGADVCHLNLHKTFCIPHGGGG-PGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPW 847 (985)
Q Consensus 774 ~~l~~p---g--~~g~Di~~~s~hK~l~~p~g~GG-Pg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~ 847 (985)
+-.... . ...+|++++ +|+|+ || ..+|++++++++.+.+.....+ .++.
T Consensus 259 g~~g~~~~~~~~~~~~di~t~--sK~l~-----~G~~~~G~v~~~~~~~~~l~~~~~~------------------~t~~ 313 (433)
T 1z7d_A 259 GRTGKLLCVHHYNVKPDVILL--GKALS-----GGHYPISAVLANDDIMLVIKPGEHG------------------STYG 313 (433)
T ss_dssp TTTSSSSGGGGGTCCCSEEEE--CGGGG-----TTSSCCEEEEECHHHHTTCCTTCCC------------------CTTT
T ss_pred CcCCcchhhHhcCCCCCEEEE--Ccccc-----CCCCCeEEEEECHHHHhhhcccccc------------------ccCC
Confidence 211111 1 124788855 58874 35 4588999998876655321000 0112
Q ss_pred hhhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc---cCCee--ecCCCCceeeEEEEEecCccccCCCCHHH
Q 001989 848 GSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK---HYPIL--FRGVNGTVAHEFIVDLRGLKNTAGIEPED 922 (985)
Q Consensus 848 g~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~---g~~l~--~~~~~~~~~~~~iv~~~~~~~~~g~~~~~ 922 (985)
+++..++++.+.+..+..++ ..++..++++++.++|++ ++++. ..+ .+.+ +.+.++. .+.+..+
T Consensus 314 ~~~~~~aaa~aal~~~~~~~---~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~-~g~~---~~i~~~~----~~~~~~~ 382 (433)
T 1z7d_A 314 GNPLAASICVEALNVLINEK---LCENAEKLGGPFLENLKRELKDSKIVRDVRG-KGLL---CAIEFKN----ELVNVLD 382 (433)
T ss_dssp TCHHHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHHHHHHHHTTCTTEEEEEE-ETTE---EEEEECT----TTCCHHH
T ss_pred CCHHHHHHHHHHHHHHHhcc---HHHHHHHHHHHHHHHHHHHHHhCCCeEEEEe-eeeE---EEEEEcc----ChhHHHH
Confidence 24455555666676665443 345667788888888875 23321 111 1121 3445541 0135788
Q ss_pred HHHHHHHCCCccCCCCCCCCCEEEEeccCCCCHHHHHHHHccCChhHHHHhhcc
Q 001989 923 VAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRLKM 976 (985)
Q Consensus 923 v~~~L~~~Gi~~~~~~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~~~ 976 (985)
+.+.|.++||.+.... .+.+|++++..+|++|||+ ++++|++++++++.
T Consensus 383 ~~~~l~~~Gv~v~~~~---~~~iRi~~~~~~t~e~i~~--~l~~l~~~l~~~~~ 431 (433)
T 1z7d_A 383 ICLKLKENGLITRDVH---DKTIRLTPPLCITKEQLDE--CTEIIVKTVKFFDE 431 (433)
T ss_dssp HHHHHHHTTEECCEET---TTEEEECCCTTCCHHHHHH--HHHHHHHHHHHHC-
T ss_pred HHHHHHHCCeEEecCC---CCEEEEECCcCCCHHHHHH--HHHHHHHHHHHHHh
Confidence 9999999999875432 4799999999999999999 88999998877643
|
| >3uwc_A Nucleotide-sugar aminotransferase; lipopolysaccharide biosynthesis; HET: MSE PMP; 1.80A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.79 E-value=6.5e-19 Score=200.32 Aligned_cols=297 Identities=11% Similarity=0.055 Sum_probs=194.0
Q ss_pred HHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcCCCCC
Q 001989 634 FNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKG 713 (985)
Q Consensus 634 ~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~d~~g 713 (985)
..++++.+++++|.+. .+++++|++|++.++.+++ ..++++|+++...|+.+...++..|++++.+++++++
T Consensus 40 ~~~l~~~la~~~~~~~-~~~~~~gt~a~~~~~~~~~-------~~~gd~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 111 (374)
T 3uwc_A 40 LEKFEKRFAALHNAPH-AIGVGTGTDALAMSFKMLN-------IGAGDEVITCANTFIASVGAIVQAGATPVLVDSENGY 111 (374)
T ss_dssp HHHHHHHHHHHTTCSE-EEEESCHHHHHHHHHHHTT-------CCTTCEEEEESSSCHHHHHHHHHTTCEEEEECBCTTS
T ss_pred HHHHHHHHHHHhCCCc-EEEeCCHHHHHHHHHHHcC-------CCCCCEEEECCCccHHHHHHHHHcCCEEEEEecCCCC
Confidence 4578899999999874 4566788887755544331 2467899999988877777788899999999998778
Q ss_pred CCCHHHHHHHHHhcCCCEEEEEEEcCCCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCccC--CcEEEeCC
Q 001989 714 NINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIG--ADVCHLNL 791 (985)
Q Consensus 714 ~iD~e~L~~~i~~~~~~t~~Vvv~~pn~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~g--~Di~~~s~ 791 (985)
.+|+++|+++++ +++++|+++ |++|.+. |+++|.++|+++|+++|+|++|..+.. + ....++ .|++++|+
T Consensus 112 ~~d~~~l~~~~~---~~~~~v~~~--n~~G~~~-~~~~i~~~~~~~~~~li~D~~~~~g~~-~-~~~~~~~~~d~~~~s~ 183 (374)
T 3uwc_A 112 VIDPEKIEAAIT---DKTKAIMPV--HYTGNIA-DMPALAKIAKKHNLHIVEDACQTILGR-I-NDKFVGSWGQFACFSL 183 (374)
T ss_dssp SBCGGGTGGGCC---TTEEEECCB--CGGGCCC-CHHHHHHHHHHTTCEEEEECTTCTTCE-E-TTEETTSSSSEEEEEC
T ss_pred CcCHHHHHHhCC---CCceEEEEe--CCcCCcC-CHHHHHHHHHHcCCEEEEeCCCccCce-e-CCeeccccccEEEEeC
Confidence 999999999987 788888833 4689988 899999999999999999999853321 1 111222 69999998
Q ss_pred c--ccccccCCCCCC-ceEEEEEcc-cccCcCCC-CccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHH
Q 001989 792 H--KTFCIPHGGGGP-GMGPIGVKK-HLAPFLPS-HPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSK 866 (985)
Q Consensus 792 h--K~l~~p~g~GGP-g~G~i~~~~-~l~~~lp~-~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~e 866 (985)
| |+|+ |+ .+|++++++ .+.+.+.. ...+... .+.......+.. .....+ + +.....+
T Consensus 184 ~~~K~l~------~~g~~g~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~----~~~~~a--a---~~~~~~~ 245 (374)
T 3uwc_A 184 HPLKNLN------VWSDAGVIITHSDEYAEKLRLYRNHGLIN---RDVCVEYGINCR----MDTIQA--V---IANRLMN 245 (374)
T ss_dssp SSSSSSC------CSSCCEEEEESCHHHHHHHHHHTBTTEEE---TTEESSCCCBCB----CCHHHH--H---HHHHHGG
T ss_pred CCCCcCC------ccceeEEEEeCCHHHHHHHHHHHhcCccc---cCccccccccCC----CCHHHH--H---HHHHHHH
Confidence 8 9884 32 367777664 33222110 0001000 000000001111 011111 1 1222234
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCC-eeecCC-CC--ceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCC-CC-
Q 001989 867 GLTEASKIAILNANYMAKRLEKHYP-ILFRGV-NG--TVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMS-WP- 940 (985)
Q Consensus 867 Gl~~~~~~~~~~a~~l~~~L~~g~~-l~~~~~-~~--~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~-~p- 940 (985)
++.+..++..++++++.+.|++... +..... .. +.+..+.+.. .+..++.+.|.++||.+.... .|
T Consensus 246 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~l~~~L~~~gi~v~~~~~~~~ 317 (374)
T 3uwc_A 246 QLETITEKRRGIAHLYDQSFVDLSEFIDVPVRREGVYHVFHIYVLRV--------KYRDQLFQYLKDNGIEVKIHYPIAM 317 (374)
T ss_dssp GHHHHHHHHHHHHHHHHHHTGGGTTTEECCCCCTTEECCCSSEEEEE--------TTHHHHHHHHHHTTBCCBCSCSSCG
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCeEEeccCCCCCceeeEEEEEEc--------CCHHHHHHHHHHCCCccccCCCCcc
Confidence 5666777788889999999987322 322211 11 1112233332 257899999999999875422 11
Q ss_pred ---------------C-------CCEEEEeccCCCCHHHHHHHHccCChhHHHHhh
Q 001989 941 ---------------V-------PGTLMIEPTESESKSWTGIVMLSSPSEKKLHRL 974 (985)
Q Consensus 941 ---------------~-------~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~ 974 (985)
. .+.+|++++..+|++|||+ ++++|++++++.
T Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~t~edi~~--~~~~l~~~l~~~ 371 (374)
T 3uwc_A 318 HLQPAAKSLGYQQGDFPMAEKHGEAVITLPAHPYLTEEEINY--IIKKVREFYLEK 371 (374)
T ss_dssp GGSGGGGGGCCCTTSCHHHHHHHHHEEEECCCTTSCHHHHHH--HHHHHHHHHHTT
T ss_pred ccChhhhhcCCccCCCccHHHHHhCEEEccCCCCCCHHHHHH--HHHHHHHHHHhh
Confidence 0 1689999999999999999 888999888653
|
| >2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A 2x8u_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=7.4e-18 Score=195.85 Aligned_cols=277 Identities=16% Similarity=0.169 Sum_probs=195.8
Q ss_pred hhhHHHHHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEE
Q 001989 206 AQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVV 285 (985)
Q Consensus 206 sqg~l~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~ 285 (985)
..|..+...++++.+|+++|.+ ...++.+|+.++++++.++ .++||+|+++...|+++...++. .|.+++.
T Consensus 104 ~~G~~~~~~~l~~~la~~~g~~--~~i~~~sGs~a~~~al~~l---~~~gd~vl~~~~~h~~~~~~~~~----~g~~~~~ 174 (427)
T 2w8t_A 104 LNGTFHDHMEVEQALRDFYGTT--GAIVFSTGYMANLGIISTL---AGKGEYVILDADSHASIYDGCQQ----GNAEIVR 174 (427)
T ss_dssp TTCCCHHHHHHHHHHHHHHTCS--EEEEESCHHHHHHHHHHHH---SCTTCEEEEETTCCHHHHHHHHH----SCSEEEE
T ss_pred ccCCcHHHHHHHHHHHHHhCCC--ceEEecCcHHHHHHHHHHh---cCCCCEEEECCcccHHHHHHHHH----cCCeeEE
Confidence 4455567788899999999986 3567778877666655443 24889999999999999988753 4777777
Q ss_pred eC---chhhhc-cCC----CEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCCC--------C-Ccc
Q 001989 286 SD---LKDIDY-KSG----DVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKP--------P-GEL 347 (985)
Q Consensus 286 v~---~~~l~~-l~~----~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~~--------~-~~~ 347 (985)
++ +++|++ +.+ ++++|++.++ |++|.+.|+++|.++|+++|+++++| +.++.+.+.. . -..
T Consensus 175 ~~~~d~~~le~~l~~~~~~~~~~v~~~~~~n~tG~~~~l~~l~~l~~~~g~~li~D-ea~~~~~~~~~g~~~~~~~~~~~ 253 (427)
T 2w8t_A 175 FRHNSVEDLDKRLGRLPKEPAKLVVLEGVYSMLGDIAPLKEMVAVAKKHGAMVLVD-EAHSMGFFGPNGRGVYEAQGLEG 253 (427)
T ss_dssp ECTTCHHHHHHHHHTSCSSSCEEEEEESEETTTTEECCHHHHHHHHHHTTCEEEEE-CTTTTTTSSTTSCCHHHHTTCTT
T ss_pred eCCCCHHHHHHHHHhccCCCCeEEEEcCCCCCCCCccCHHHHHHHHHHcCCEEEEE-CCccccccCCCCCchHhhcCCCc
Confidence 65 456665 533 7899999887 78999999999999999999999994 4555544321 1 123
Q ss_pred cceEEEecC-ccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHH
Q 001989 348 GADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQAL 426 (985)
Q Consensus 348 GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l 426 (985)
++|+++++. |.|+ .|| |++++++++++.+... .+.|. ..++.|. ...
T Consensus 254 ~~di~~~s~sK~~g------~~g-G~v~~~~~l~~~l~~~----------~~~~~------------~~~~~~~---~~~ 301 (427)
T 2w8t_A 254 QIDFVVGTFSKSVG------TVG-GFVVSNHPKFEAVRLA----------CRPYI------------FTASLPP---SVV 301 (427)
T ss_dssp CCSEEEEESSSTTC------SCC-EEEEECCTTGGGGGGT----------CHHHH------------SSCCCCH---HHH
T ss_pred CCcEEEecchhhhc------cCC-CEEEeCHHHHHHHHHh----------ccccc------------ccCCCCH---HHH
Confidence 689999998 8775 234 8999988877665210 00010 0111121 122
Q ss_pred HHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCC-CcceEEEecCC---HHHHHHHHHHcCceeeee
Q 001989 427 LANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLP-FFDTVKVKCAD---AHAIASAAYKIEMNLRVV 502 (985)
Q Consensus 427 ~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~-~~~~~~~~~~~---~~~v~~~L~~~GI~~~~~ 502 (985)
.+..+++ ..+. .++++.++..++.+++++.|+++| +++...+ ....+.+.+++ ..++.+.|.++||.+...
T Consensus 302 aa~~~al--~~~~--~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~Gi~v~~~ 376 (427)
T 2w8t_A 302 ATATTSI--RKLM--TAHEKRERLWSNARALHGGLKAMG-FRLGTETCDSAIVAVMLEDQEQAAMMWQALLDGGLYVNMA 376 (427)
T ss_dssp HHHHHHH--HHHT--SCHHHHHHHHHHHHHHHHHHHHHT-CEESCSSCCSSEEEEEESSHHHHHHHHHHHHHTTEECEEE
T ss_pred HHHHHHH--HHHh--cCHHHHHHHHHHHHHHHHHHHHcC-CcccCCCCCCCEEEEEECCHHHHHHHHHHHHHCCeEEeee
Confidence 2222332 3332 257788899999999999999887 8876323 33445566654 778999999999988653
Q ss_pred c-------CCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 503 D-------SNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 503 ~-------~~~lris~t~~~t~edId~li~aL~~ 529 (985)
. .+.+|++++..+|++||++++++|.+
T Consensus 377 ~~~~~~~~~~~lRi~~~~~~t~e~i~~~~~~l~~ 410 (427)
T 2w8t_A 377 RPPATPAGTFLLRCSICAEHTPAQIQTVLGMFQA 410 (427)
T ss_dssp CTTTSCTTCEEEEEECCTTCCHHHHHHHHHHHHH
T ss_pred CCCCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 2 25899999999999999999999974
|
| >3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter pylori 26695} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.79 E-value=1.6e-18 Score=197.19 Aligned_cols=291 Identities=9% Similarity=-0.062 Sum_probs=192.4
Q ss_pred hhHHHHHHHHHHHHHHHhCC--Cccc-eecCcHHHHHHHHHHHHHHHHHhcCCCC--CCEEEEcCCCCcccHHHHHHCCc
Q 001989 628 QGYQEMFNNLGEWLCTITGF--DSFS-LQPNAGAAGEYAGLMVIRAYHKARGDHH--RNVCIIPVSAHGTNPATAAMCGM 702 (985)
Q Consensus 628 ~G~~~~~~e~~~~la~l~G~--~~~~-~~~~sGa~a~~a~l~air~~~~~~g~~~--~~~IIv~~~~Hg~~~~~a~~~G~ 702 (985)
+|..++.+++.+++++.+|. +... ++.++|++++..++.++. .+ +++|+++.+.|..+...++..|+
T Consensus 59 ~g~~~lr~~la~~l~~~~g~~~~~~~i~~t~g~~~al~~~~~~~~--------~~~~gd~vl~~~p~~~~~~~~~~~~g~ 130 (376)
T 3ezs_A 59 AFEESLRAAQRGFFKRRFKIELKENELISTLGSREVLFNFPSFVL--------FDYQNPTIAYPNPFYQIYEGAAKFIKA 130 (376)
T ss_dssp TCCHHHHHHHHHHHHHHHSCCCCGGGEEEESSSHHHHHHHHHHHT--------TTCSSCEEEEEESCCTHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHHHHHhCCCCCHHHEEECcCcHHHHHHHHHHHc--------CCCCCCEEEEecCCcHhHHHHHHHcCC
Confidence 45566677777788777887 4443 455667776654444332 35 78999988888777777888999
Q ss_pred EEEEEcCCCCCCCCHHHHHHHHHhcCCCEEEEEEEcCC-Ccccccc--CHHHHHHHHHHcCCEEEEEccccccc-cCCCC
Q 001989 703 KIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPS-THGVYEE--GIDEICKIIHDNGGQVYMDGANMNAQ-VGLTS 778 (985)
Q Consensus 703 ~vv~v~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~pn-~~G~i~~--di~eI~~la~~~galliVD~a~~~~~-~~l~~ 778 (985)
+++.+|+++++.+++ +|++++. +++++|++++|+ ++|.+.+ ++++|.++|+++|+++|+|+++.... .+...
T Consensus 131 ~~~~~~~~~~~~~~~-~l~~~~~---~~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~ 206 (376)
T 3ezs_A 131 KSLLMPLTKENDFTP-SLNEKEL---QEVDLVILNSPNNPTGRTLSLEELISWVKLALKHDFILINDECYSEIYENTPPP 206 (376)
T ss_dssp EEEEEECCGGGTSCC-CCCHHHH---HHCSEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBSSSCCC
T ss_pred EEEEcccCCCCCcch-hHHhhhc---cCCCEEEEcCCCCCcCCCCCHHHHHHHHHHHHHcCcEEEEEccchhhccCCCCC
Confidence 999999977655555 7778887 578889999985 6998861 37788888999999999999985211 11000
Q ss_pred C-C---------ccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchh
Q 001989 779 P-G---------YIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWG 848 (985)
Q Consensus 779 p-g---------~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g 848 (985)
+ . ..+.++++.|++|+|+. .|.++|++++++++.+.+.... ...+.+.
T Consensus 207 ~~~~~~~~~~~~~~~~~i~~~s~sK~~g~----~G~r~G~~~~~~~~~~~~~~~~------------~~~~~~~------ 264 (376)
T 3ezs_A 207 SLLEACMLAGNEAFKNVLVIHSLSKRSSA----PGLRSGFIAGDSRLLEKYKAFR------------AYLGYTS------ 264 (376)
T ss_dssp CHHHHHHHTTCTTCTTEEEEEESTTTTTC----GGGCCEEEEECHHHHHHHHHHH------------TTTCCCC------
T ss_pred CHHHccccccccccCcEEEEecchhccCC----ccceeEEEeeCHHHHHHHHHHH------------hhhcCCC------
Confidence 0 0 35677999999999854 3667899998877665442110 0001111
Q ss_pred hhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhccCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHH
Q 001989 849 SALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLM 928 (985)
Q Consensus 849 ~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~ 928 (985)
+.....++.+.+.. .+.+.+..++..++.+++.+.|+ ++. . +....+ +.++++ +..++.++|.
T Consensus 265 ~~~~~~a~~~~l~~--~~~~~~~~~~~~~~~~~l~~~l~-~~~--~--~~~~~~--~~~~~~--------~~~~~~~~l~ 327 (376)
T 3ezs_A 265 ANAIQKASEAAWLD--DRHAEFFRNIYANNLKLARKIFK-NTL--I--YPYSFY--VYLPVQ--------NGENFAKTLY 327 (376)
T ss_dssp CHHHHHHHHHHHHC--SHHHHHHHHHHHHHHHHHHHHST-TCC--C--CSBSSE--EEEECS--------CHHHHHHHHH
T ss_pred ChHHHHHHHHHHhC--cHHHHHHHHHHHHHHHHHHHHhc-CCC--C--CCcceE--EEEECC--------CHHHHHHHHH
Confidence 11222223333432 23456666777888888888887 333 1 112222 234442 5788999998
Q ss_pred H-CCCccCCCC-C----CCCCEEEEeccCCCCHHHHHHHHccCChhHHHHh
Q 001989 929 D-YGFHGPTMS-W----PVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHR 973 (985)
Q Consensus 929 ~-~Gi~~~~~~-~----p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~ 973 (985)
+ +||.+.... + ...+++||+++. |++||++ +++.|++++++
T Consensus 328 ~~~gi~v~~g~~~~~~~~~~~~iRis~~~--~~~~i~~--~l~~l~~~l~~ 374 (376)
T 3ezs_A 328 QNEGIITLPALYLGRNRIGADYVRLALVY--DTPLLEK--PLEIIETYREN 374 (376)
T ss_dssp HHHCCBCEEGGGGCSTTTTTTEEEEECCS--CHHHHHH--HHHHHHHHHCC
T ss_pred HhCCEEEeCcHHhCCCCCCCCeEEEEEcC--CHHHHHH--HHHHHHHHHHh
Confidence 8 899875321 1 135899999874 9999999 77888887764
|
| >2c0r_A PSAT, phosphoserine aminotransferase; pyridoxal-5'-phosphate, pyridine serine biosynthesis, amino-acid biosynthesis, pyridoxal phosphate; HET: PLP; 1.2A {Bacillus circulans} SCOP: c.67.1.4 PDB: 1bt4_A* 1w3u_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=1.4e-18 Score=196.97 Aligned_cols=298 Identities=11% Similarity=0.068 Sum_probs=188.4
Q ss_pred hHHHHHHHHHHHHHHHhCCCcc-c--eecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccH--HHHHHCCcE
Q 001989 629 GYQEMFNNLGEWLCTITGFDSF-S--LQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNP--ATAAMCGMK 703 (985)
Q Consensus 629 G~~~~~~e~~~~la~l~G~~~~-~--~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~--~~a~~~G~~ 703 (985)
+..+..+++++++++++|.+.. . ++.++|++++..++. .+. .++|+||+++..|..+. ..++..| +
T Consensus 46 ~~~~~~~~~~~~la~~~g~~~~~~~i~~t~g~t~a~~~~~~---~l~-----~~gd~vl~~~~~~~~~~~~~~~~~~g-~ 116 (362)
T 2c0r_A 46 VYEAVHNEAQARLLALLGNPTGYKVLFIQGGASTQFAMIPM---NFL-----KEGQTANYVMTGSWASKALKEAKLIG-D 116 (362)
T ss_dssp HHHHHHHHHHHHHHHHTTCCSSEEEEEESSHHHHHHHHHHH---HHC-----CTTCEEEEEECSHHHHHHHHHHHHHS-C
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcEEEEECCCchHHHHHHHH---hcC-----CCCCeEEEEecCcHhHHHHHHHHHhC-C
Confidence 4456788999999999999752 3 344666666644443 321 36788887654332322 2345678 9
Q ss_pred EEEEcCCC---CC-CCCHHHHHHHHHhcCCCEEEEEEEcC-CCcccc-ccCHHHHHHHHHHcCCEEEEEccccccccCCC
Q 001989 704 IVSVGTDA---KG-NINIEELRKAAEANRDNLSTLMVTYP-STHGVY-EEGIDEICKIIHDNGGQVYMDGANMNAQVGLT 777 (985)
Q Consensus 704 vv~v~~d~---~g-~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i-~~di~eI~~la~~~galliVD~a~~~~~~~l~ 777 (985)
++.++++. .+ .+|.++++ ++ ++|++|++++| |++|.+ . |+++| +|+++++|++|..+...+
T Consensus 117 ~~~v~~~~~~~~~~~~~~~~~~--i~---~~t~~v~~~~~~n~tG~~~~-~l~~i------~~~~vivD~a~~~~~~~~- 183 (362)
T 2c0r_A 117 THVAASSEASNYMTLPKLQEIQ--LQ---DNAAYLHLTSNETIEGAQFK-AFPDT------GSVPLIGDMSSDILSRPF- 183 (362)
T ss_dssp EEEEEECGGGTTCSCCCGGGCC--CC---TTEEEEEEESEETTTTEECS-SCCCC------TTSCEEEECTTTTTSSCC-
T ss_pred eEEEecccccccccCCCHHHcc--cC---CCcCEEEEeCCcCccceecc-ccccc------CCCEEEEEChhhccCCcc-
Confidence 99998762 22 35776654 55 78999999987 579995 6 78887 799999999986443221
Q ss_pred CCCccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCC---ccccCCCCCCCCCCCCCCCCCCcchhhhHHHH
Q 001989 778 SPGYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSH---PVVSTGGIPAPEKSQPLGTIAAAPWGSALILP 854 (985)
Q Consensus 778 ~pg~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~---~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~ 854 (985)
...+ .|++++++||+|+ .+|+|++++++++.+.+... ++.... .. ......++.. .....
T Consensus 184 ~~~~--~d~~~~s~~K~~g------~~G~G~l~~~~~~~~~l~~~~~~~~~~~~--~~-~~~~~~~t~~------~~~~~ 246 (362)
T 2c0r_A 184 DLNQ--FGLVYAGAQKNLG------PSGVTVVIVREDLVAESPKHLPTMLRYDT--YV-KNNSLYNTPP------SFGIY 246 (362)
T ss_dssp CGGG--CSEEEEETTTTTC------CSSCEEEEEEGGGSSSCCTTSCGGGCHHH--HH-HTTTCSSCCC------HHHHH
T ss_pred chhH--CcEEEEecccccc------CcCcEEEEEcHHHHhhccccCchHHhHHH--Hh-hccCcCCCch------HHHHH
Confidence 1222 4999999999984 34689999998877655321 110000 00 0000011111 11222
Q ss_pred HHHHHHHHhcHH-HHHHHHHHHHHHHHHHHHHhhc-c-C-CeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHC
Q 001989 855 ISYTYIAMMGSK-GLTEASKIAILNANYMAKRLEK-H-Y-PILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDY 930 (985)
Q Consensus 855 ~a~a~l~~lg~e-Gl~~~~~~~~~~a~~l~~~L~~-g-~-~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~ 930 (985)
++.+++..+..+ ++.++.++..++++++.++|++ + + ++.. .+.......+.+.++ .+.+..+++++|.++
T Consensus 247 a~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~-~~~~~~~~~~~~~~~-----~~~~~~~~~~~L~~~ 320 (362)
T 2c0r_A 247 MVNEVLKWIEERGGLEGVQQANRKKASLIYDAIDQSGGFYRGCV-DVDSRSDMNITFRLA-----SEELEKEFVKASEQE 320 (362)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTSTTSSEESS-CGGGBCSSEEEEECS-----CHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHcCCccccCC-ChHHcCCcEEEEEcC-----CcchHHHHHHHHHHC
Confidence 334555555554 7888888899999999999987 3 3 3321 110011112345543 123567899999999
Q ss_pred CCccCCCCCCCCCEEEEeccCCCCHHHHHHHHccCChhHHHHhh
Q 001989 931 GFHGPTMSWPVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRL 974 (985)
Q Consensus 931 Gi~~~~~~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~ 974 (985)
||.+..- .+..+.+|||+...+|+||+++ +++.|++++++.
T Consensus 321 gi~~~~g-~~~~~~iRis~~~~~~~e~i~~--l~~~l~~~~~~~ 361 (362)
T 2c0r_A 321 GFVGLKG-HRSVGGLRASIYNAVPYESCEA--LVQFMEHFKRSR 361 (362)
T ss_dssp TEESCBC-CTTTCSEEEECCTTSCHHHHHH--HHHHHHHHHHHH
T ss_pred CCeeccC-CCCCCEEEEECCCCCCHHHHHH--HHHHHHHHHHhc
Confidence 9976421 1223689999999999999999 778888887654
|
| >3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha and beta protein; HET: LLP; 2.65A {Bacillus anthracis} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.79 E-value=4.8e-18 Score=194.70 Aligned_cols=284 Identities=14% Similarity=0.147 Sum_probs=186.4
Q ss_pred HHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHH-HhcCC-CCCCEEEEcC-CCCcccHHHHHHCC---------
Q 001989 634 FNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYH-KARGD-HHRNVCIIPV-SAHGTNPATAAMCG--------- 701 (985)
Q Consensus 634 ~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~-~~~g~-~~~~~IIv~~-~~Hg~~~~~a~~~G--------- 701 (985)
..++++++++++|.+ ..++.++|++|++.++.+++.+. ..+|. .++++||++. .+|+.........+
T Consensus 80 ~~~l~~~la~~~g~~-~v~~~~~gt~a~~~al~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (392)
T 3ruy_A 80 LGPWYEKVAKLTNKE-MVLPMNTGAEAVETAIKTARRWAYDVKKVEANRAEIIVCEDNFHGRTMGAVSMSSNEEYKRGFG 158 (392)
T ss_dssp HHHHHHHHHHHHTCS-EEEEESSHHHHHHHHHHHHHHHHHHTSCCCTTCCEEEEETTCCCCSSHHHHHTCSCTTTTTTCC
T ss_pred HHHHHHHHHHhcCCC-EEEEeCcHHHHHHHHHHHHHHhhhhccCCCCCCcEEEEEcCCcCCCCHhhhhccCChhhccccC
Confidence 568889999999954 34667889988877777665431 12222 2356888854 45566555443322
Q ss_pred ---cEEEEEcCCCCCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccC----HHHHHHHHHHcCCEEEEEccccccc
Q 001989 702 ---MKIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEG----IDEICKIIHDNGGQVYMDGANMNAQ 773 (985)
Q Consensus 702 ---~~vv~v~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~d----i~eI~~la~~~galliVD~a~~~~~ 773 (985)
.++..++.+ |+++|+++++ +++++|++++| |++|.+. | +++|.++|+++|+++|+|++|. ++
T Consensus 159 ~~~~~~~~~~~~-----d~~~l~~~l~---~~~~~v~~~~~~nptG~~~-~~~~~l~~i~~l~~~~~~~li~De~~~-~~ 228 (392)
T 3ruy_A 159 PMLPGIIVIPYG-----DLEALKAAIT---PNTAAFILEPIQGEAGINI-PPAGFLKEALEVCKKENVLFVADEIQT-GL 228 (392)
T ss_dssp SCCSSEEEECTT-----CHHHHHHHCC---TTEEEEEECSSBSTTTSBC-CCTTHHHHHHHHHHTTTCEEEEECTTT-TT
T ss_pred CCCCCCeeeCcc-----cHHHHHHHhc---cCeEEEEEeCccCCCCCcc-CCHHHHHHHHHHHHHcCCEEEEeechh-CC
Confidence 135556653 8999999997 79999999998 5799997 6 9999999999999999999984 22
Q ss_pred cCCCCC---C--ccCCcEEEeCCcccccccCCCCC-CceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcch
Q 001989 774 VGLTSP---G--YIGADVCHLNLHKTFCIPHGGGG-PGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPW 847 (985)
Q Consensus 774 ~~l~~p---g--~~g~Di~~~s~hK~l~~p~g~GG-Pg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~ 847 (985)
+....+ . ...+|++++| |+++ || .++|++++++++.+.+.....+ .+.+.
T Consensus 229 ~~~g~~~~~~~~~~~~d~~~~S--K~l~-----gG~~~~G~~~~~~~~~~~~~~~~~~--------------~~~~~--- 284 (392)
T 3ruy_A 229 GRTGKVFACDWDNVTPDMYILG--KALG-----GGVFPISCAAANRDILGVFEPGSHG--------------STFGG--- 284 (392)
T ss_dssp TTTSSSSGGGGGTCCCSEEEEC--GGGG-----TTTSCCEEEEECHHHHTTCCTTSSC--------------CSSTT---
T ss_pred CccccchhhhccCCCCCEEEEc--hhhh-----CChhhhEEEEECHHHHhhhccCCcC--------------CCCCC---
Confidence 111111 1 2346888775 8763 34 6789999988776655422100 01111
Q ss_pred hhhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc-cCC-eeecCCCCceeeEEEEEecCccccCCCCHHHHHH
Q 001989 848 GSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK-HYP-ILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAK 925 (985)
Q Consensus 848 g~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~-l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~ 925 (985)
++..+.++.+.+..+.. .+..++..++++++.+.|++ +.. +....+.+. .+.+.++ + +..++.+
T Consensus 285 -~~~~~~a~~~~l~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~---~~~~~~~------~-~~~~l~~ 350 (392)
T 3ruy_A 285 -NPLACAVSIAALEVLEE---EKLTERSLQLGEKLVGQLKEIDNPMITEVRGKGL---FIGIELN------E-PARPYCE 350 (392)
T ss_dssp -CHHHHHHHHHHHHHHHH---TTHHHHHHHHHHHHHHHHTTCCCTTEEEEEEETT---EEEEEES------S-CSHHHHH
T ss_pred -CHHHHHHHHHHHHHHHh---hhHHHHHHHHHHHHHHHHHHhcCCCceEEEeeee---EEEEEEc------c-hHHHHHH
Confidence 23333444455555433 34455677888999999986 322 211111111 1334443 2 5678999
Q ss_pred HHHHCCCccCCCCCCCCCEEEEeccCCCCHHHHHHHHccCChhHHH
Q 001989 926 RLMDYGFHGPTMSWPVPGTLMIEPTESESKSWTGIVMLSSPSEKKL 971 (985)
Q Consensus 926 ~L~~~Gi~~~~~~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~~ 971 (985)
.|.++||.+.... .+.+|++++..+|++|+++ +++.|++++
T Consensus 351 ~l~~~gi~v~~~~---~~~iRi~~~~~~~~~~i~~--~~~~l~~~l 391 (392)
T 3ruy_A 351 QLKAAGLLCKETH---ENVIRIAPPLVISEEDLEW--AFQKIKAVL 391 (392)
T ss_dssp HHHTTTEECCCBT---TTEEEECCCTTCCHHHHHH--HHHHHHHHH
T ss_pred HHHHCCcEEecCC---CCEEEEECCCCCCHHHHHH--HHHHHHHHh
Confidence 9999999886433 4799999999999999999 777777764
|
| >3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate aminotrans structural genomics, protein structure initiative; 1.61A {Geobacter metallireducens gs-15} | Back alignment and structure |
|---|
Probab=99.79 E-value=8.4e-19 Score=198.71 Aligned_cols=280 Identities=11% Similarity=0.047 Sum_probs=189.2
Q ss_pred HHHHHHHHHHhCCCccc-eecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcCCCCC
Q 001989 635 NNLGEWLCTITGFDSFS-LQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKG 713 (985)
Q Consensus 635 ~e~~~~la~l~G~~~~~-~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~d~~g 713 (985)
.++++.+++++|.+... ++.++|++|+..++.++. .++|+|+++.+.|..+...++..|++++.+|+++++
T Consensus 68 ~~lr~~la~~~g~~~~~i~~t~g~~~al~~~~~~l~--------~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~ 139 (360)
T 3hdo_A 68 QKLREVAGELYGFDPSWIIMANGSDEVLNNLIRAFA--------AEGEEIGYVHPSYSYYGTLAEVQGARVRTFGLTGDF 139 (360)
T ss_dssp HHHHHHHHHHHTCCGGGEEEESSHHHHHHHHHHHHC--------CTTCEEEEESSSCTHHHHHHHHHTCEEEEECBCTTS
T ss_pred HHHHHHHHHHhCcCcceEEEcCCHHHHHHHHHHHHh--------CCCCEEEEcCCChHHHHHHHHHCCCEEEEeeCCCCC
Confidence 37888999999977654 455667766654444331 467899999887877777788899999999997665
Q ss_pred CCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCC---CCccCCcEEEe
Q 001989 714 NINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTS---PGYIGADVCHL 789 (985)
Q Consensus 714 ~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~---pg~~g~Di~~~ 789 (985)
.+ +++++.+ ++++|++++| |++|.+. |+++|.++|+++|+++++|++|.. +.+-.. ....+.++++.
T Consensus 140 ~~--~~l~~~~-----~~~~v~i~~p~nptG~~~-~~~~l~~l~~~~~~~li~De~~~~-~~~~~~~~~~~~~~~~i~~~ 210 (360)
T 3hdo_A 140 RI--AGFPERY-----EGKVFFLTTPNAPLGPSF-PLEYIDELARRCAGMLVLDETYAE-FAESNALELVRRHENVVVTR 210 (360)
T ss_dssp SB--TTCCSSB-----CSSEEEEESSCTTTCCCC-CHHHHHHHHHHBSSEEEEECTTGG-GSSCCCTHHHHHCSSEEEEE
T ss_pred CH--HHHHhhc-----CCCEEEEeCCCCCCCCCc-CHHHHHHHHHHCCCEEEEECChHh-hCCcchhHHhccCCCEEEEe
Confidence 55 4443322 3458888998 5699998 899999999999999999999852 221110 01234568888
Q ss_pred CCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHHHH
Q 001989 790 NLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLT 869 (985)
Q Consensus 790 s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl~ 869 (985)
|++|+|+. +|.++|++++++++.+.+.... ...+ . +.....++.+++.. .+.+.
T Consensus 211 s~sK~~g~----~G~r~G~~~~~~~~~~~~~~~~--------------~~~~--~----~~~~~~a~~~~l~~--~~~~~ 264 (360)
T 3hdo_A 211 TLSKSYSL----AGMRIGLAIARPEVIAALDKIR--------------DHYN--L----DRLAQAACVAALRD--QAYLS 264 (360)
T ss_dssp ESTTTTSC----TTSCCEEEECCHHHHHHHHHHS--------------CSCC--S----CHHHHHHHHHHHHC--HHHHH
T ss_pred cchHhhcC----CccceeeEeeCHHHHHHHHHhC--------------CCCC--C----CHHHHHHHHHHhcC--HHHHH
Confidence 99999854 3678899998877665442110 0001 1 12222333344442 34567
Q ss_pred HHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCCC-CCCCEEEE
Q 001989 870 EASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSW-PVPGTLMI 947 (985)
Q Consensus 870 ~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~~-p~~~~lri 947 (985)
+..++..++++++.+.|++ ++.+ ..+.+. + +.+.++ +.+..++.+.|.++||.+..... ..++++||
T Consensus 265 ~~~~~~~~~~~~l~~~L~~~~~~~--~~~~~~-~--~~~~~~------~~~~~~l~~~l~~~gi~v~~~~~~~~~~~iRi 333 (360)
T 3hdo_A 265 ECCRRIRETREWFTTELRSIGYDV--IPSQGN-Y--LFATPP------DRDGKRVYDGLYARKVLVRHFSDPLLAHGMRI 333 (360)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEE--CCCSSS-E--EEEECT------TCCHHHHHHHHHHTTEECBCCCSTTTTTSEEE
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEE--cCCCcc-E--EEEECC------CCCHHHHHHHHHHCCEEEEECCCCCCCCEEEE
Confidence 7777788889999999987 4433 222222 2 334543 45788999999999999865432 23589999
Q ss_pred eccCCCCHHHHHHHHccCChhHHHHh
Q 001989 948 EPTESESKSWTGIVMLSSPSEKKLHR 973 (985)
Q Consensus 948 s~t~~~t~eeId~~~~~~~l~~~~~~ 973 (985)
+++ +++|+|+ ++++|+++.+.
T Consensus 334 s~~---~~~e~~~--l~~al~~~~~~ 354 (360)
T 3hdo_A 334 SIG---TREEMEQ--TLAALKEIGEG 354 (360)
T ss_dssp ECC---CHHHHHH--HHHHHHHHHC-
T ss_pred EcC---CHHHHHH--HHHHHHHHhcc
Confidence 985 9999999 76777766543
|
| >3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural genomics, center for structural genomics O infectious diseases; 1.80A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=99.79 E-value=7e-18 Score=193.61 Aligned_cols=289 Identities=13% Similarity=0.121 Sum_probs=189.4
Q ss_pred HHHHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEE-cCCCCcccHHHHHH-----------
Q 001989 632 EMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCII-PVSAHGTNPATAAM----------- 699 (985)
Q Consensus 632 ~~~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv-~~~~Hg~~~~~a~~----------- 699 (985)
+...++++++++++|.+. .++.++|++|++.++.+++.+...+| .++++||+ ...+||........
T Consensus 78 ~~~~~l~~~la~~~~~~~-v~~~~gg~ea~~~al~~~~~~~~~~g-~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~ 155 (395)
T 3nx3_A 78 ENIAAAAKNLAKASALER-VFFTNSGTESIEGAMKTARKYAFNKG-VKGGQFIAFKHSFHGRTLGALSLTANEKYQKPFK 155 (395)
T ss_dssp HHHHHHHHHHHHHHTCSE-EEEESSHHHHHHHHHHHHHHHHHHTT-CTTCEEEEETTCCCCSSHHHHTTCCCHHHHGGGC
T ss_pred HHHHHHHHHHHHhcCCCe-EEEeCCHHHHHHHHHHHHHHHhhccC-CCCCEEEEEcCCcCCCCHHHHhhcCCcccccccC
Confidence 346688899999998543 46678899999888887776544444 35677777 55677765444322
Q ss_pred -CCcEEEEEcCCCCCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccC----HHHHHHHHHHcCCEEEEEccccccc
Q 001989 700 -CGMKIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEG----IDEICKIIHDNGGQVYMDGANMNAQ 773 (985)
Q Consensus 700 -~G~~vv~v~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~d----i~eI~~la~~~galliVD~a~~~~~ 773 (985)
.+.++..+|.+ |+++|+++++ +++++|+++.+ ++.|.+. + +++|+++|+++|+++|+|++|. ++
T Consensus 156 ~~~~~~~~~~~~-----d~~~l~~~l~---~~~~~v~~~~~~~~~G~~~-~~~~~l~~l~~l~~~~~~~li~Dev~~-~~ 225 (395)
T 3nx3_A 156 PLISGVKFAKYN-----DISSVEKLVN---EKTCAIILESVQGEGGINP-ANKDFYKALRKLCDEKDILLIADEIQC-GM 225 (395)
T ss_dssp SCCSCEEEECTT-----CHHHHHTTCC---TTEEEEEEESEECTTSCEE-CCHHHHHHHHHHHHHHTCEEEEECTTT-TT
T ss_pred CCCCCcEEeCCC-----CHHHHHHhcc---CCeEEEEEeCccCCCCccc-CCHHHHHHHHHHHHHcCCEEEEEeccc-CC
Confidence 23467777764 8999999997 78998888775 4678776 4 9999999999999999999874 22
Q ss_pred cCCCCC-----CccCCcEEEeCCcccccccCCCCCCceEEEEEcccc-cCcCCCCccccCCCCCCCCCCCCCCCCCCcch
Q 001989 774 VGLTSP-----GYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHL-APFLPSHPVVSTGGIPAPEKSQPLGTIAAAPW 847 (985)
Q Consensus 774 ~~l~~p-----g~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l-~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~ 847 (985)
+....+ ....+|++++| |+|+ +|.++|++++++++ .+.+.....+ .+.+
T Consensus 226 g~~g~~~~~~~~~~~~d~~t~s--K~~~-----~G~~~G~~~~~~~~~~~~~~~~~~~--------------~~~~---- 280 (395)
T 3nx3_A 226 GRSGKFFAYEHAQILPDIMTSA--KALG-----CGLSVGAFVINQKVASNSLEAGDHG--------------STYG---- 280 (395)
T ss_dssp TTTSSSSGGGGGTCCCSEEEEC--GGGT-----TTSCCEEEEECHHHHHHHSCTTCCS--------------SCBS----
T ss_pred CcCCcchhHHhcCCCCCEEEec--cccc-----CCCceEEEEEchhhhhhhcCCcccC--------------CCCC----
Confidence 111111 12246887764 8874 35789999999887 6555321111 0111
Q ss_pred hhhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhcc---CC-eeecCCCCceeeEEEEEecCccccCCCCHHHH
Q 001989 848 GSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKH---YP-ILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDV 923 (985)
Q Consensus 848 g~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~g---~~-l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v 923 (985)
+++..++++.+.+..+..+.+ .++..++.+++++.|++. +. +......+. .+.+.+.. ..+..++
T Consensus 281 ~~~~~~~aa~aal~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~---~~~~~~~~-----~~~~~~~ 349 (395)
T 3nx3_A 281 GNPLVCAGVNAVFEIFKEEKI---LENVNKLTPYLEQSLDELINEFDFCKKRKGLGF---MQGLSLDK-----SVKVAKV 349 (395)
T ss_dssp CCHHHHHHHHHHHHHHHHTTH---HHHHHHHHHHHHHHHHHHHHHCTTEEEEEEETT---EEEEEECT-----TSCHHHH
T ss_pred CCHHHHHHHHHHHHHHHhhHH---HHHHHHHHHHHHHHHHHHHHhCCCeEEEEeEEE---EEEEEeCC-----cchHHHH
Confidence 133444445555665544333 345556667777777541 22 111100111 13345441 2367899
Q ss_pred HHHHHHCCCccCCCCCCCCCEEEEeccCCCCHHHHHHHHccCChhHHHHh
Q 001989 924 AKRLMDYGFHGPTMSWPVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHR 973 (985)
Q Consensus 924 ~~~L~~~Gi~~~~~~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~ 973 (985)
.+.|.++|+.+.... .+.+||+++..+|++|+++ +++.|++++++
T Consensus 350 ~~~l~~~Gi~v~~~~---~~~iRi~~~~~~t~e~i~~--~l~~l~~~l~~ 394 (395)
T 3nx3_A 350 IQKCQENALLLISCG---ENDLRFLPPLILQKEHIDE--MSEKLRKALKS 394 (395)
T ss_dssp HHHHHHTTEECEEET---TTEEEECCCTTCCHHHHHH--HHHHHHHHHHT
T ss_pred HHHHHHCCCEEecCC---CCEEEEECCCCCCHHHHHH--HHHHHHHHHHh
Confidence 999999999876433 4799999999999999999 78888888764
|
| >1xi9_A Putative transaminase; alanine aminotransferase, southeast collaboratory for structural genomics, secsg; HET: PLP; 2.33A {Pyrococcus furiosus} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.79 E-value=9.7e-19 Score=201.66 Aligned_cols=303 Identities=14% Similarity=0.038 Sum_probs=196.2
Q ss_pred hhHHHHHHHHHHHHHHHhCCC--ccc-eecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEE
Q 001989 628 QGYQEMFNNLGEWLCTITGFD--SFS-LQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKI 704 (985)
Q Consensus 628 ~G~~~~~~e~~~~la~l~G~~--~~~-~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~v 704 (985)
+|..++.+++.+++.+.+|.+ ... ++.++|++|+..++.++. .++++|++++..|..+...++..|+++
T Consensus 78 ~g~~~l~~~la~~l~~~~g~~~~~~~v~~t~g~~~al~~~~~~l~--------~~gd~Vl~~~~~~~~~~~~~~~~g~~~ 149 (406)
T 1xi9_A 78 EGLPELRKAIVEREKRKNGVDITPDDVRVTAAVTEALQLIFGALL--------DPGDEILVPGPSYPPYTGLVKFYGGKP 149 (406)
T ss_dssp TCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHHHHHC--------CTTCEEEEEESCCHHHHHHHHHTTCEE
T ss_pred CCcHHHHHHHHHHHHHhcCCCCCHHHEEEcCChHHHHHHHHHHhC--------CCCCEEEEcCCCCccHHHHHHHcCCEE
Confidence 455555666666666666543 333 455666666654444331 367899998887777666778899999
Q ss_pred EEEcCCC--CCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccc--cCHHHHHHHHHHcCCEEEEEccccccc-cC-CC
Q 001989 705 VSVGTDA--KGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYE--EGIDEICKIIHDNGGQVYMDGANMNAQ-VG-LT 777 (985)
Q Consensus 705 v~v~~d~--~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~--~di~eI~~la~~~galliVD~a~~~~~-~~-l~ 777 (985)
+.+|+++ ++.+|+++|+++++ +++++|++++| |++|.+. .++++|.++|+++|+++++|+++.... ++ ..
T Consensus 150 ~~v~~~~~~~~~~d~~~l~~~l~---~~~~~v~i~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~~~~ 226 (406)
T 1xi9_A 150 VEYRTIEEEDWQPDIDDIRKKIT---DRTKAIAVINPNNPTGALYDKKTLEEILNIAGEYEIPVISDEIYDLMTYEGEHI 226 (406)
T ss_dssp EEEEEEGGGTSEECHHHHHHHCC---TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBSSSCCC
T ss_pred EEeecCCCcCCcCCHHHHHHhhC---cCceEEEEECCCCCCCCCcCHHHHHHHHHHHHHcCCEEEEEcCccccccCCCCC
Confidence 9999864 35689999999997 68999999998 4799885 149999999999999999999985321 11 00
Q ss_pred CCCc--cCC-cEEEeCCcccccccCCCCCCceEEEE--Ecc----cccCcCCCCccccCCCCCCCCCCCCCCCCCCcchh
Q 001989 778 SPGY--IGA-DVCHLNLHKTFCIPHGGGGPGMGPIG--VKK----HLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWG 848 (985)
Q Consensus 778 ~pg~--~g~-Di~~~s~hK~l~~p~g~GGPg~G~i~--~~~----~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g 848 (985)
.... .+. |+++.|+||+|+. +|.++|+++ +++ ++.+.+.... ... .+. +.
T Consensus 227 ~~~~~~~~~~~i~~~s~sK~~~~----~G~r~G~~~~~~~~~~~~~l~~~l~~~~------------~~~-~~~--~~-- 285 (406)
T 1xi9_A 227 SPGSLTKDVPVIVMNGLSKVYFA----TGWRLGYMYFVDPENKLSEVREAIDRLA------------RIR-LCP--NT-- 285 (406)
T ss_dssp CHHHHCSSSCEEEEEESTTTTCC----GGGCCEEEEEECTTCTTHHHHHHHHHHH------------HHT-CCS--CS--
T ss_pred CHHHcCCCceEEEEeccccccCC----CccEEEEEEEecCchhHHHHHHHHHHHH------------Hhh-cCC--CH--
Confidence 1112 245 7889999999853 245689988 777 6554432100 000 111 11
Q ss_pred hhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhccCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHH
Q 001989 849 SALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLM 928 (985)
Q Consensus 849 ~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~ 928 (985)
....++.++|.. +.+.+.+..++..++++++.+.|++...+....+.+..+ +.+.++.. .+.+..++.++|.
T Consensus 286 --~~~~a~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~--~~~~~~~~---~~~~~~~l~~~l~ 357 (406)
T 1xi9_A 286 --PAQFAAIAGLTG-PMDYLKEYMKKLKERRDYIYKRLNEIPGISTTKPQGAFY--IFPKIEVG---PWKNDKEFVLDVL 357 (406)
T ss_dssp --HHHHHHHHHHHS-CCHHHHHHHHHHHHHHHHHHHHHHTSTTEECCCCCBSSE--ECCEECSC---SCSSHHHHHHHHH
T ss_pred --HHHHHHHHHHhC-CcHHHHHHHHHHHHHHHHHHHHHHhCCCCeeecCCeeEE--EEEecCcc---CCCCHHHHHHHHH
Confidence 112223334432 344566777778888999999998632332222222222 22344310 0346788999987
Q ss_pred -HCCCccCCC-CCC--CCCEEEEeccCCCCHHHHHHHHccCChhHHHHhh
Q 001989 929 -DYGFHGPTM-SWP--VPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRL 974 (985)
Q Consensus 929 -~~Gi~~~~~-~~p--~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~ 974 (985)
++||.+... .+. ..+.+||++. +++++|++ +++.|+++++++
T Consensus 358 ~~~gi~v~~g~~f~~~~~~~lRis~~--~~~~~i~~--~~~~l~~~l~~~ 403 (406)
T 1xi9_A 358 HNAHVLFVHGSGFGEYGAGHFRAVFL--PPIEILEE--AMDRFEKFMKER 403 (406)
T ss_dssp HHHCEECEEGGGGCGGGTTBEEEECC--SCHHHHHH--HHHHHHHHHHHC
T ss_pred HhCCEEEeCchhcCCCCCCEEEEEec--CCHHHHHH--HHHHHHHHHHHH
Confidence 889987532 222 2479999997 89999999 778888888765
|
| >2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate aminotransferase, pyridoxal-5-phosphate, SAD, glycolate pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.79 E-value=6.6e-18 Score=192.37 Aligned_cols=291 Identities=13% Similarity=0.039 Sum_probs=196.4
Q ss_pred HHHHHHHHHHHhcCCC----CcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCC--hhHHHHHHHhhcCCCeEEEE
Q 001989 212 SLLNFQTMIADLTGLP----MSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCH--PQTIDICITRADGFDIKVVV 285 (985)
Q Consensus 212 ~i~e~q~~ia~L~g~~----~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H--~s~~~~~~~~a~~~gi~v~~ 285 (985)
...++++.++++++.. +.++.+++|+|.+++.++.++....++||+|++.+..+ .++...+ +..|++++.
T Consensus 39 ~~~~~~~~l~~~~~~~~~~~~~~v~~~~g~t~al~~~~~~~~~~~~~gd~vlv~~~~~~~~~~~~~~----~~~g~~~~~ 114 (385)
T 2bkw_A 39 IFQRVLKNTRAVFKSAAASKSQPFVLAGSGTLGWDIFASNFILSKAPNKNVLVVSTGTFSDRFADCL----RSYGAQVDV 114 (385)
T ss_dssp HHHHHHHHHHHHTTCCGGGTCEEEEEESCTTHHHHHHHHHHSCTTCSCCEEEEECSSHHHHHHHHHH----HHTTCEEEE
T ss_pred HHHHHHHHHHHHhCCCCCCCCceEEEcCchHHHHHHHHHHHhccCCCCCeEEEEcCCcchHHHHHHH----HHcCCceEE
Confidence 4455677888887764 46788899999888877766521013789998875533 3322333 345888888
Q ss_pred eCc---------hhhhc-cCC-CEeEEEEEcC-CCCeeeccHHHHHHHHHhC--CcEEEEEecCccccCCC-CCCcccce
Q 001989 286 SDL---------KDIDY-KSG-DVCGVLVQYP-GTEGEVLDYGDFIKNAHAN--GVKVVMATDLLALTILK-PPGELGAD 350 (985)
Q Consensus 286 v~~---------~~l~~-l~~-~t~~V~v~~p-n~~G~v~di~~I~~~a~~~--galliV~a~~~~lg~l~-~~~~~GaD 350 (985)
++. ++|++ +++ ++++|++++| |.+|.+.|+++|.++||++ |+++++| +..+.|... +..++|+|
T Consensus 115 v~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~l~~i~~~~~~~~~~~~li~D-~a~~~~~~~~~~~~~~~d 193 (385)
T 2bkw_A 115 VRPLKIGESVPLELITEKLSQNSYGAVTVTHVDTSTAVLSDLKAISQAIKQTSPETFFVVD-AVCSIGCEEFEFDEWGVD 193 (385)
T ss_dssp ECCSSTTSCCCHHHHHHHHHHSCCSEEEEESEETTTTEECCHHHHHHHHHHHCTTSEEEEE-CTTTTTTSCCCTTTTTCS
T ss_pred EecCCCCCCCCHHHHHHHHhcCCCCEEEEEccCCCcCeEcCHHHHHHHHHhhCCCCEEEEE-CccccCCccccccccCce
Confidence 765 24555 554 7899999987 7899999999999999999 9999995 344555432 34668999
Q ss_pred EEEecC-ccccccCCCCCCcEEEEEEchhhHh-cC------CCceeeeeecCCCCcceeeecccccccccccc------c
Q 001989 351 IVVGSA-QRFGVPMGYGGPHAAFLATSQEYKR-MM------PGRIVGVSIDSSGKPALRVAMQTREQHIRRDK------A 416 (985)
Q Consensus 351 i~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~-~l------p~~~vG~t~d~~g~~~~~l~l~tre~~irre~------a 416 (985)
++++++ |+++ |+||+|++++++++++ .+ +++..|. .. ..+ +....+.+. +
T Consensus 194 ~~~~s~~K~~~-----~~~G~G~~~~~~~~~~~~l~~~~~~~~~~~~~------~~---~~~--~~~~~~~~~~~~~~~~ 257 (385)
T 2bkw_A 194 FALTASQKAIG-----APAGLSISLCSSRFMDYALNDSKNGHVHGYFS------SL---RRW--TPIMENYEAGKGAYFA 257 (385)
T ss_dssp EEEEESSSTTC-----CCSCEEEEEECHHHHHHHTCHHHHCCCSCSTT------CH---HHH--HHHHHHHHTTCCCCSS
T ss_pred EEEecCccccc-----cCCcceEEEEcHHHHHHHHhhccCCCCCceee------cH---HHH--hhHHHhhhccCCCCCC
Confidence 999998 6674 3456899999998876 55 2221110 00 000 000001111 2
Q ss_pred CCCccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHH-hcCCCeEEcC-CC----CcceEEEecCCHHHHHH
Q 001989 417 TSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGL-KKLGTVEVQG-LP----FFDTVKVKCADAHAIAS 490 (985)
Q Consensus 417 tsni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L-~~~g~~~~~~-~~----~~~~~~~~~~~~~~v~~ 490 (985)
|.|+ ....++.+++ .++...|++++.++..++++++.+.| +++| +++.. .+ ....+.+..++..++.+
T Consensus 258 ~~~~---~~~~a~~~al--~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (385)
T 2bkw_A 258 TPPV---QLINSLDVAL--KEILEEGLHKRWDLHREMSDWFKDSLVNGLQ-LTSVSRYPSNMSAHGLTAVYVADPPDVIA 331 (385)
T ss_dssp CCCH---HHHHHHHHHH--HHHHHHCHHHHHHHHHHHHHHHHHHHHTTTC-CEESSCSSSTTBCSSCEEEECSCHHHHHH
T ss_pred CCCH---HHHHHHHHHH--HHHHHccHHHHHHHHHHHHHHHHHHHHHhcC-ceecccCcccccCCceEEEecCCHHHHHH
Confidence 3333 2333444443 44444578899999999999999999 8886 88874 21 23446677666778999
Q ss_pred HHHHcCceeeee-----cCCeEEEE-ecc---CCCHHHHHHHHHHHhC
Q 001989 491 AAYKIEMNLRVV-----DSNTVTAS-FDE---TTTLEDVDKLFIVFAG 529 (985)
Q Consensus 491 ~L~~~GI~~~~~-----~~~~lris-~t~---~~t~edId~li~aL~~ 529 (985)
+|.++||.+... ..+.+|++ +.. .+|++|+++++++|.+
T Consensus 332 ~l~~~gi~v~~g~~~~~~~~~iRis~~~~~~~~~~~e~i~~~~~~l~~ 379 (385)
T 2bkw_A 332 FLKSHGVVIAGGIHKDIGPKYIRIGHMGVTACNKNLPYMKNCFDLIKL 379 (385)
T ss_dssp HHHHTTEECBCCCCTTTGGGEEEECCCGGGTSSTTCTHHHHHHHHHHH
T ss_pred HHHHCCeEEeCCCCcccCCCEEEEEccccccccCCHHHHHHHHHHHHH
Confidence 999999987642 14689999 552 5799999999999974
|
| >2fq6_A Cystathionine beta-lyase; protein-inhibitor complex, PLP cofactor covalently bound to inhibitor; HET: P3F; 1.78A {Escherichia coli} SCOP: c.67.1.3 PDB: 2gqn_A* 1cl1_A* 1cl2_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=2e-17 Score=191.34 Aligned_cols=273 Identities=14% Similarity=0.097 Sum_probs=186.3
Q ss_pred HHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc---hh
Q 001989 214 LNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL---KD 290 (985)
Q Consensus 214 ~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~---~~ 290 (985)
.++++.+|+++|.+. +.++.+||+++.+++.++ . ++||+||++...|+++...+..+++..|+++++++. ++
T Consensus 85 ~~le~~lA~l~g~~~--~i~~ssGt~Ai~~al~~l-~--~~Gd~Vi~~~~~y~~~~~~~~~~l~~~G~~v~~v~~~d~~~ 159 (415)
T 2fq6_A 85 FSLQQAMCELEGGAG--CVLFPCGAAAVANSILAF-I--EQGDHVLMTNTAYEPSQDFCSKILSKLGVTTSWFDPLIGAD 159 (415)
T ss_dssp HHHHHHHHHHHTCSE--EEEESSHHHHHHHHHHTT-C--CTTCEEEEETTSCHHHHHHHHHTGGGGTCEEEEECTTCGGG
T ss_pred HHHHHHHHHHhCCCe--EEEeCCHHHHHHHHHHHH-h--CCCCEEEEeCCCchHHHHHHHHHHHHcCcEEEEECCCCHHH
Confidence 457789999999864 567788887776665543 2 389999999999999999987666678999999875 56
Q ss_pred hhc-cCCCEeEEEEEcC-CCCeeeccHHHHHHHHHh--CCcEEEEEecCccccCCCCCCcccceEEEecC-ccccccCCC
Q 001989 291 IDY-KSGDVCGVLVQYP-GTEGEVLDYGDFIKNAHA--NGVKVVMATDLLALTILKPPGELGADIVVGSA-QRFGVPMGY 365 (985)
Q Consensus 291 l~~-l~~~t~~V~v~~p-n~~G~v~di~~I~~~a~~--~galliV~a~~~~lg~l~~~~~~GaDi~v~s~-k~lg~P~~~ 365 (985)
+++ ++++|++|++.+| |.+|.+.|+++|+++||+ +|++++|| +.++.+....|-++|+|++++|+ |.+++|
T Consensus 160 le~ai~~~tklV~~e~~~NptG~v~dl~~I~~la~~~~~g~~livD-~a~a~~~~~~p~~~g~Div~~S~sK~lg~~--- 235 (415)
T 2fq6_A 160 IVKHLQPNTKIVFLESPGSITMEVHDVPAIVAAVRSVVPDAIIMID-NTWAAGVLFKALDFGIDVSIQAATKYLVGH--- 235 (415)
T ss_dssp GGGGCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHCTTCEEEEE-CTTTTTTSSCGGGGTCSEEEEETTTTTTCS---
T ss_pred HHHhhccCCcEEEEECCCCCCCEeecHHHHHHHHHhhcCCCEEEEE-CCCcccccCCccccCCeEEEEeCccccCCC---
Confidence 666 8889999999988 789999999999999999 99999995 35555555566789999999998 666532
Q ss_pred CCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcchHHH
Q 001989 366 GGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKT 445 (985)
Q Consensus 366 GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~ 445 (985)
|+.-.|++++++++++++.. .++..|+.. .+..+ |+...+.+.+..
T Consensus 236 g~~~~G~l~~~~~~~~~l~~-------------------------~~~~~G~~~----~~~~a-----~~~~~~l~~l~~ 281 (415)
T 2fq6_A 236 SDAMIGTAVCNARCWEQLRE-------------------------NAYLMGQMV----DADTA-----YITSRGLRTLGV 281 (415)
T ss_dssp SSCCCEEEEECTTTHHHHHH-------------------------HHHHTTCCC----CHHHH-----HHHHHHHHHHHH
T ss_pred CCceEEEEEeCHHHHHHHHH-------------------------HHHhcCCCC----CHHHH-----HHHHhhhhHHHH
Confidence 22225889888766544310 011112211 11111 111112234555
Q ss_pred HHHHHHHHHHHHHHHHhcCCCeE-E-cCC----C-----------CcceEEEecCC---HHHHHHHHHHcC---ceee--
Q 001989 446 IAQRVHGLAGTFALGLKKLGTVE-V-QGL----P-----------FFDTVKVKCAD---AHAIASAAYKIE---MNLR-- 500 (985)
Q Consensus 446 i~~~~~~~a~~l~~~L~~~g~~~-~-~~~----~-----------~~~~~~~~~~~---~~~v~~~L~~~G---I~~~-- 500 (985)
..++..+++.++++.|++.+.++ + +.. + ....+.|.+++ ..+..+.|...+ |.++
T Consensus 282 r~~~~~~n~~~l~~~L~~~~~v~~v~~p~l~~~~~~~~~~~~~~~~g~i~sf~l~g~~~~~~~~~~l~~l~~~~~a~s~G 361 (415)
T 2fq6_A 282 RLRQHHESSLKVAEWLAEHPQVARVNHPALPGSKGHEFWKRDFTGSSGLFSFVLKKKLNNEELANYLDNFSLFSMAYSWG 361 (415)
T ss_dssp HHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSCCCSEEEEEESSCCCHHHHHHHHTTCSSCEECSCCC
T ss_pred HHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEECCCCCHHHHHHHHHhCCcCeEeccCC
Confidence 66777888999999998874344 2 111 1 22356676654 334433333323 2111
Q ss_pred -------e--------------e--cCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 501 -------V--------------V--DSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 501 -------~--------------~--~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
. . .++.||+|++..+++++|+.|.++|..
T Consensus 362 ~~~s~~~~~~p~~~s~~~~~~~~g~~~~~iRlS~G~e~~~d~i~~l~~al~~ 413 (415)
T 2fq6_A 362 GYESLILANQPEHIAAIRPQGEIDFSGTLIRLHIGLEDVDDLIADLDAGFAR 413 (415)
T ss_dssp SSSCEEEEECHHHHHTTCTTCCCCCCSCEEEEECCSSCHHHHHHHHHHHHHT
T ss_pred CCceeEEecCCCccccccchhhcCCCCCEEEEEecCCCHHHHHHHHHHHHHh
Confidence 0 1 147899999999999999999999974
|
| >2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.79 E-value=2.6e-18 Score=198.47 Aligned_cols=302 Identities=11% Similarity=0.075 Sum_probs=196.9
Q ss_pred hhHHHHHHHHHHHHHHHhCC--Cc--cceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcE
Q 001989 628 QGYQEMFNNLGEWLCTITGF--DS--FSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMK 703 (985)
Q Consensus 628 ~G~~~~~~e~~~~la~l~G~--~~--~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~ 703 (985)
+|..++.+.+.+++.+.+|. +. ..++.++|++|+..++.++. .++++|+++.+.|..+...++..|++
T Consensus 75 ~g~~~l~~~ia~~~~~~~g~~~~~~~~v~~t~g~~~a~~~~~~~~~--------~~gd~Vl~~~p~~~~~~~~~~~~g~~ 146 (412)
T 2x5d_A 75 RGIPRLRRAISHWYRDRYDVQIDPESEAIVTIGSKEGLAHLMLATL--------DHGDTILVPNPSYPIHIYGAVIAGAQ 146 (412)
T ss_dssp TCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESCHHHHHHHHHHHHC--------CTTCEEEEEESCCHHHHHHHHHHTCE
T ss_pred CCcHHHHHHHHHHHHHHhCCCCCCCcCEEEcCChHHHHHHHHHHhC--------CCCCEEEEcCCCchhHHHHHHHcCCE
Confidence 35444454555555555585 32 33556677777654444331 36789999888777776677788999
Q ss_pred EEEEcCCCC-C-CCCHHHHHHHHHhcCCCEEEEEEEcCC-Ccccccc--CHHHHHHHHHHcCCEEEEEcccccccc-CC-
Q 001989 704 IVSVGTDAK-G-NINIEELRKAAEANRDNLSTLMVTYPS-THGVYEE--GIDEICKIIHDNGGQVYMDGANMNAQV-GL- 776 (985)
Q Consensus 704 vv~v~~d~~-g-~iD~e~L~~~i~~~~~~t~~Vvv~~pn-~~G~i~~--di~eI~~la~~~galliVD~a~~~~~~-~l- 776 (985)
++.+|++++ + .+|+++|+++++ +++++|++++|+ ++|.+.+ ++++|.++|+++|+++++|+++....- +-
T Consensus 147 ~~~~~~~~~~~~~~d~~~l~~~i~---~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~ 223 (412)
T 2x5d_A 147 VRSVPLVPGIDFFNELERAIRESI---PKPRMMILGFPSNPTAQCVELDFFERVVALAKQYDVMVVHDLAYADIVYDGWK 223 (412)
T ss_dssp EEEEECSTTSCHHHHHHHHHHTEE---SCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCC
T ss_pred EEEeecCCccCCCCCHHHHHHhcc---cCceEEEECCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCC
Confidence 999998764 3 378999999987 678899999985 6898852 478999999999999999999853220 10
Q ss_pred -CCCC----ccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhH
Q 001989 777 -TSPG----YIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSAL 851 (985)
Q Consensus 777 -~~pg----~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~ 851 (985)
.... ..+.|+++.|+||+|+. +|.++|++++++++.+.+...... .+.+. +..
T Consensus 224 ~~~~~~~~~~~~~~i~~~s~sK~~~~----~G~r~G~~~~~~~~~~~l~~~~~~------------~~~~~------~~~ 281 (412)
T 2x5d_A 224 APSIMQVPGAKDIAVEFFTLSKSYNM----AGWRIGFMVGNPELVSALARIKSY------------HDYGT------FTP 281 (412)
T ss_dssp CCCGGGSTTGGGTEEEEEECC-CCSC----TTSCCEEEEECHHHHHHHHHHHHH------------HCCCC------CHH
T ss_pred CCChhhccCccCcEEEEecCccccCC----cccceEEEEcCHHHHHHHHHHHhh------------hccCC------CHH
Confidence 0111 14678999999999854 356789999987765544211000 00111 112
Q ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCC---CHHHHHHHH
Q 001989 852 ILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGI---EPEDVAKRL 927 (985)
Q Consensus 852 ~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~---~~~~v~~~L 927 (985)
...++.++|.. +.+.+.+..++..++++++.+.|++ ++.+. .+.+..+ +.+.++ .+. +..++.++|
T Consensus 282 ~~~a~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~--~~~~g~~--~~~~~~-----~~~~~~~~~~~~~~l 351 (412)
T 2x5d_A 282 LQVAAIAALEG-DQQCVRDIARQYQQRRDVLVKGLREAGWMVE--NPKASMY--VWAKIP-----EPYAHLGSLEFAKKL 351 (412)
T ss_dssp HHHHHHHHHHS-CSHHHHHHHHHHHHHHHHHHHHHHHHTCCCC--CCSBSSE--EEEECC-----TTTGGGCHHHHHHHH
T ss_pred HHHHHHHHHhC-CHHHHHHHHHHHHHHHHHHHHHHHHCCCEec--CCCeeeE--EEEEcC-----CccCCCCHHHHHHHH
Confidence 22223344442 3345677777788889999999987 44442 2222222 335553 133 678899998
Q ss_pred HH-CCCccCCCC-CC--CCCEEEEeccCCCCHHHHHHHHccCChhHHHHhhcc
Q 001989 928 MD-YGFHGPTMS-WP--VPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRLKM 976 (985)
Q Consensus 928 ~~-~Gi~~~~~~-~p--~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~~~ 976 (985)
.+ +||.+.... +. ..+++||+++. ++++|++ +++.|+++++++..
T Consensus 352 ~~~~gi~v~~g~~f~~~~~~~iRis~~~--~~~~l~~--~l~~l~~~l~~~~~ 400 (412)
T 2x5d_A 352 LQDAKVSVSPGIGFGDYGDDHVRFALIE--NRDRLRQ--AVRGIKAMFRADGL 400 (412)
T ss_dssp HHHHCEECEEGGGGCGGGTTEEEEECCS--CHHHHHH--HHHHHHHHHHHTTC
T ss_pred HHHCCEEEeCchhhCCCCCCeEEEEecC--CHHHHHH--HHHHHHHHHHhcCC
Confidence 65 699875322 21 24799999986 8999999 78889988877554
|
| >1pff_A Methionine gamma-lyase; homocysteine; 2.50A {Trichomonas vaginalis} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.79 E-value=5e-18 Score=189.87 Aligned_cols=161 Identities=13% Similarity=0.070 Sum_probs=124.1
Q ss_pred HHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHH----HHCCcEEEEEcCCC
Q 001989 636 NLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATA----AMCGMKIVSVGTDA 711 (985)
Q Consensus 636 e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a----~~~G~~vv~v~~d~ 711 (985)
++++.+++++|.+ ..+.+++|++|+..++.++. .++++|+++...|+.+.... +..|++++.++.
T Consensus 2 ~l~~~la~~~g~~-~~i~~~sG~~a~~~~~~~~~--------~~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-- 70 (331)
T 1pff_A 2 ALEGKIAKLEHAE-ACAATASGMGAIAASVWTFL--------KAGDHLISDDCLYGCTHALFEHQLRKFGVEVDFIDM-- 70 (331)
T ss_dssp HHHHHHHHHHTCS-EEEEESSHHHHHHHHHHHHC--------CTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECT--
T ss_pred hHHHHHHHHhCCC-eEEEeCChHHHHHHHHHHhc--------CCCCEEEEcCCCcchHHHHHHHHHHhcCCEEEEeCC--
Confidence 5788999999987 45667778776654444331 36789999988777654443 458999999986
Q ss_pred CCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccCHHHHHHHHHH-cCCEEEEEccccccccCCCCCCccCCcEEEe
Q 001989 712 KGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHD-NGGQVYMDGANMNAQVGLTSPGYIGADVCHL 789 (985)
Q Consensus 712 ~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~di~eI~~la~~-~galliVD~a~~~~~~~l~~pg~~g~Di~~~ 789 (985)
.|+++|+++++ +++++|++++| |++|.+. |+++|.++|++ +|+++++|++|..+.. ..+.+++.|+++.
T Consensus 71 ---~d~~~l~~~i~---~~~~~v~~~~~~nptG~~~-~~~~i~~~~~~~~~~~li~D~a~~~~~~--~~~~~~~~d~~~~ 141 (331)
T 1pff_A 71 ---AVPGNIEKHLK---PNTRIVYFETPANPTLKVI-DIEDAVKQARKQKDILVIVDNTFASPIL--TNPLDLGVDIVVH 141 (331)
T ss_dssp ---TSTTHHHHTCC---TTEEEEEEESSCTTTCCCC-CHHHHHHHHTTSSSCEEEEECTTTHHHH--CCGGGGTCSEEEE
T ss_pred ---CCHHHHHHhhc---CCCeEEEEECCCCCcCccc-CHHHHHHHHhhhcCCEEEEECCCccccc--CChhhcCCcEEEE
Confidence 48899999987 78999999998 4699998 89999999999 9999999999864332 2344678999999
Q ss_pred CCcccccccCCCCCCceEEEEEcc-cccCcC
Q 001989 790 NLHKTFCIPHGGGGPGMGPIGVKK-HLAPFL 819 (985)
Q Consensus 790 s~hK~l~~p~g~GGPg~G~i~~~~-~l~~~l 819 (985)
|+||+|+.| |++.+|++++++ ++.+.+
T Consensus 142 s~~K~~~~~---~~r~~G~~~~~~~~~~~~l 169 (331)
T 1pff_A 142 SATKYINGH---TDVVAGLVCSRADIIAKVK 169 (331)
T ss_dssp ETTTTTSSS---SSCCCEEEEECHHHHHHHH
T ss_pred ECccccCCC---CCceEEEEEeCcHHHHHHH
Confidence 999998533 223378999987 665544
|
| >1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=5.2e-18 Score=192.18 Aligned_cols=278 Identities=13% Similarity=0.110 Sum_probs=183.0
Q ss_pred HHHHHHHHHHhCCCccceec-CcHHHHHHHHHHHHHHHHHhcCCCCC-CEEEEcCCCCcccHHHHHHCCcEEEEEcCCCC
Q 001989 635 NNLGEWLCTITGFDSFSLQP-NAGAAGEYAGLMVIRAYHKARGDHHR-NVCIIPVSAHGTNPATAAMCGMKIVSVGTDAK 712 (985)
Q Consensus 635 ~e~~~~la~l~G~~~~~~~~-~sGa~a~~a~l~air~~~~~~g~~~~-~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~d~~ 712 (985)
.++++.+++++|.+...+.. +++++++..++.++. .++ ++|+++.+.|..+...++..|++++.+|.+++
T Consensus 61 ~~lr~~la~~~~~~~~~v~~~~G~~~ai~~~~~~~~--------~~g~d~Vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~ 132 (356)
T 1fg7_A 61 KAVIENYAQYAGVKPEQVLVSRGADEGIELLIRAFC--------EPGKDAILYCPPTYGMYSVSAETIGVECRTVPTLDN 132 (356)
T ss_dssp HHHHHHHHHHHTSCGGGEEEESHHHHHHHHHHHHHC--------CTTTCEEEECSSSCTHHHHHHHHHTCEEEECCCCTT
T ss_pred HHHHHHHHHHhCCChHHEEEcCCHHHHHHHHHHHHh--------CCCCCEEEEeCCChHHHHHHHHHcCCEEEEeeCCCC
Confidence 47888999999988655544 444555544433321 356 89999988787777777888999999998877
Q ss_pred CCCCHHHHHHHHHhcCCCEEEEEEEcCC-CccccccCH---HHHHHHHHHcCCEEEEEcccccccc--CCCC-CCccCCc
Q 001989 713 GNINIEELRKAAEANRDNLSTLMVTYPS-THGVYEEGI---DEICKIIHDNGGQVYMDGANMNAQV--GLTS-PGYIGAD 785 (985)
Q Consensus 713 g~iD~e~L~~~i~~~~~~t~~Vvv~~pn-~~G~i~~di---~eI~~la~~~galliVD~a~~~~~~--~l~~-pg~~g~D 785 (985)
+.+|+++|+++++ ++++|++++|+ ++|.+. +. ++|+++|+ +|+++++|+++..... .+.. ...++.+
T Consensus 133 ~~~d~~~l~~~i~----~~~~v~l~~p~nptG~~~-~~~~l~~l~~~~~-~~~~li~De~~~~~~~~~~~~~~~~~~~~~ 206 (356)
T 1fg7_A 133 WQLDLQGISDKLD----GVKVVYVCSPNNPTGQLI-NPQDFRTLLELTR-GKAIVVADEAYIEFCPQASLAGWLAEYPHL 206 (356)
T ss_dssp SCCCHHHHHTSCT----TEEEEEEESSCTTTCCCC-CHHHHHHHHHHHT-TTCEEEEECTTGGGSGGGCSGGGTTTCTTE
T ss_pred CCCCHHHHHHHhc----CCCEEEEeCCCCCCCCCC-CHHHHHHHHHhCC-CCCEEEEEccchhhcCCCcHHHHHhhCCCE
Confidence 7899999988874 68999999995 699886 54 55555566 8999999999852211 1111 1334567
Q ss_pred EEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcH
Q 001989 786 VCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGS 865 (985)
Q Consensus 786 i~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~ 865 (985)
+++.|++|+|+. +|.++|++++++++.+.+... + .+.+. +.....++ +..+..
T Consensus 207 i~~~s~sK~~g~----~G~r~G~~~~~~~~~~~l~~~------------~--~~~~~------~~~~~~a~---~~~l~~ 259 (356)
T 1fg7_A 207 AILRTLSKAFAL----AGLRCGFTLANEEVINLLMKV------------I--APYPL------STPVADIA---AQALSP 259 (356)
T ss_dssp EEEEESSSTTCC----GGGCCEEEEECHHHHHHHHHH------------S--CSSCS------CHHHHHHH---HHHTSH
T ss_pred EEEecchHhhcC----chhhhEEEEeCHHHHHHHHHh------------c--CCCCC------CHHHHHHH---HHHhcC
Confidence 889999999854 356789999987765543211 0 00011 11222222 233334
Q ss_pred HH---HHHHHHHHHHHHHHHHHHhhccCCe-eecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCC-C-C
Q 001989 866 KG---LTEASKIAILNANYMAKRLEKHYPI-LFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTM-S-W 939 (985)
Q Consensus 866 eG---l~~~~~~~~~~a~~l~~~L~~g~~l-~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~-~-~ 939 (985)
.+ +.+..++..++++++.+.|++...+ ...+. ...+ +.++++ +..++.++|.++||.+..+ . +
T Consensus 260 ~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~-~~~~--~~~~~~--------~~~~l~~~L~~~gI~v~~~g~~~ 328 (356)
T 1fg7_A 260 QGIVAMRERVAQIIAEREYLIAALKEIPCVEQVFDS-ETNY--ILARFK--------ASSAVFKSLWDQGIILRDQNKQP 328 (356)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSTTEEEECCC-SSSE--EEEEET--------THHHHHHHHHHTTEECEECTTST
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhCCCceEECCC-CCeE--EEEECC--------CHHHHHHHHHHCCEEEEECCCCC
Confidence 34 5666667788889999999862222 22122 2222 334442 5778999999999997652 2 2
Q ss_pred CCCCEEEEeccCCCCHHHHHHHHccCChhH
Q 001989 940 PVPGTLMIEPTESESKSWTGIVMLSSPSEK 969 (985)
Q Consensus 940 p~~~~lris~t~~~t~eeId~~~~~~~l~~ 969 (985)
..++++||++. +++|+++ ++++|++
T Consensus 329 ~~~~~iRis~~---~~~e~~~--~~~~l~~ 353 (356)
T 1fg7_A 329 SLSGCLRITVG---TREESQR--VIDALRA 353 (356)
T ss_dssp TCTTEEEEECC---CHHHHHH--HHHHHHT
T ss_pred CCCCeEEEEeC---CHHHHHH--HHHHHHh
Confidence 23479999995 7899999 5555543
|
| >1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent aminotransferase fold; HET: PLP; 2.20A {Salmonella typhimurium} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.79 E-value=5.5e-18 Score=191.31 Aligned_cols=319 Identities=13% Similarity=0.115 Sum_probs=209.2
Q ss_pred cCCCCCCCCCcHHHHHHHHhCCccccccCCChhhHhhhHHHHHHHHHHHHHHhcCCCC--cceeeccchHHHHHHHHHHh
Q 001989 171 IGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPM--SNASLLDEGTAAAEAMAMCN 248 (985)
Q Consensus 171 lG~g~y~~~~p~~v~~~i~~~~~~~t~~~pyq~e~sqg~l~~i~e~q~~ia~L~g~~~--~~~sl~~~~ta~~ea~~~a~ 248 (985)
++.| |...|+.+.+++.+. + ..+.++.. .+.+.++++.+|+++|.+. .++.+++|+|.+++.++.++
T Consensus 8 ~~~g--p~~~~~~v~~a~~~~--~----~~~~~~~~---~~~~~~l~~~la~~~g~~~~~~~v~~~~g~t~a~~~~~~~~ 76 (366)
T 1m32_A 8 LTPG--PLTTSRTVKEAMLFD--S----CTWDDDYN---IGVVEQIRQQLTALATASEGYTSVLLQGSGSYAVEAVLGSA 76 (366)
T ss_dssp CSSS--SCCCCHHHHHTTCCC--C----CTTSHHHH---TTTHHHHHHHHHHHHCSSSSEEEEEEESCHHHHHHHHHHHS
T ss_pred ccCC--CcCCCHHHHHHHhhh--h----cCCCHHHH---HHHHHHHHHHHHHHhCCCCcCcEEEEecChHHHHHHHHHHh
Confidence 3555 344777776554432 1 11122211 1446678899999999422 36888999998888777665
Q ss_pred hhhcCCCCEEEEc-CCCChhHH-HHHHHhhcCCCeEEEEeCc--------hhhhc-cCC--CEeEEEEEcC-CCCeeecc
Q 001989 249 NIQKGKKKTFIIA-SNCHPQTI-DICITRADGFDIKVVVSDL--------KDIDY-KSG--DVCGVLVQYP-GTEGEVLD 314 (985)
Q Consensus 249 ~~~~~~g~~Vlv~-~~~H~s~~-~~~~~~a~~~gi~v~~v~~--------~~l~~-l~~--~t~~V~v~~p-n~~G~v~d 314 (985)
. ++||+|++. ...|++.. ..++ ..|++++.++. ++|++ +++ ++++|++.+| |++|.+.|
T Consensus 77 ~---~~gd~vi~~~~~~~~~~~~~~~~----~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~~v~~~~~~nptG~~~~ 149 (366)
T 1m32_A 77 L---GPQDKVLIVSNGAYGARMVEMAG----LMGIAHHAYDCGEVARPDVQAIDAILNADPTISHIAMVHSETTTGMLNP 149 (366)
T ss_dssp C---CTTCCEEEEESSHHHHHHHHHHH----HHTCCEEEEECCTTSCCCHHHHHHHHHHCTTCCEEEEESEETTTTEECC
T ss_pred c---CCCCeEEEEeCCCccHHHHHHHH----HhCCceEEEeCCCCCCCCHHHHHHHHhcCCCeEEEEEecccCCcceecC
Confidence 2 377887655 47888643 3332 34666666543 45655 543 5788888887 78999999
Q ss_pred HHHHHHHHHhCCcEEEEEecCccccCCC-CCCcccceEEEecC-ccccccCCCCCCcEEEEEEchhhHhcCCCceeeeee
Q 001989 315 YGDFIKNAHANGVKVVMATDLLALTILK-PPGELGADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSI 392 (985)
Q Consensus 315 i~~I~~~a~~~galliV~a~~~~lg~l~-~~~~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~ 392 (985)
+++|.++||++|+++++| +.++.+... ...++|+|++++|. |++++ ++|+|++++++++++.+....
T Consensus 150 l~~i~~l~~~~~~~li~D-ea~~~~~~~~~~~~~~~di~~~s~~K~~~~-----~~g~G~~~~~~~~~~~~~~~~----- 218 (366)
T 1m32_A 150 IDEVGALAHRYGKTYIVD-AMSSFGGIPMDIAALHIDYLISSANKCIQG-----VPGFAFVIAREQKLAACKGHS----- 218 (366)
T ss_dssp HHHHHHHHHHHTCEEEEE-CTTTTTTSCCCTTTTTCSEEEEESSSTTCC-----CSSEEEEEEEHHHHTTCTTCC-----
T ss_pred HHHHHHHHHHcCCEEEEE-CCccccCcCccccccCccEEEecCcccccC-----CCceEEEEECHHHHHhhcCCC-----
Confidence 999999999999999995 344554432 23457899999997 76743 346799999999887774311
Q ss_pred cCCCCcceeeecccccccccc----cccCCCccchhHHHHHHHHHHHHHhCcch-HHHHHHHHHHHHHHHHHHHhcCCCe
Q 001989 393 DSSGKPALRVAMQTREQHIRR----DKATSNICTAQALLANMAAMYAVYHGPEG-LKTIAQRVHGLAGTFALGLKKLGTV 467 (985)
Q Consensus 393 d~~g~~~~~l~l~tre~~irr----e~atsni~t~~~l~a~~aa~~l~~~g~~G-l~~i~~~~~~~a~~l~~~L~~~g~~ 467 (985)
..|.+++.......+. ..+|.|. ....++.+++ ..+...| ++++.++..++++++.+.|+++| +
T Consensus 219 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~a~~~al--~~~~~~g~~~~~~~~~~~~~~~l~~~L~~~~-~ 287 (366)
T 1m32_A 219 -----RSLSLDLYAQWRCMEDNHGKWRFTSPT---HTVLAFAQAL--KELAKEGGVAARHQRYQQNQRSLVAGMRALG-F 287 (366)
T ss_dssp -----SCSTTCHHHHHHHHHHTTTCCSSCCCH---HHHHHHHHHH--HHHHHHTHHHHHHHHHHHHHHHHHHHHHHTT-C
T ss_pred -----CCccccHHHHHhhhcccCCCCCCCCCH---HHHHHHHHHH--HHHHHccCHhHHHHHHHHHHHHHHHHHHHCC-C
Confidence 0121111000000000 0123332 2333344443 4444455 88899999999999999999986 8
Q ss_pred EEcCC--CCcc-eEEEecC---C--HHHHHHHHHHcCceeeee---cCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 468 EVQGL--PFFD-TVKVKCA---D--AHAIASAAYKIEMNLRVV---DSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 468 ~~~~~--~~~~-~~~~~~~---~--~~~v~~~L~~~GI~~~~~---~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
++..+ +... .+.+..+ + ..++.+.|.++||.+... .++.+|++++..+|++|+++++++|.+
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~ 360 (366)
T 1m32_A 288 NTLLDDELHSPIITAFYSPEDPQYRFSEFYRRLKEQGFVIYPGKVSQSDCFRIGNIGEVYAADITALLTAIRT 360 (366)
T ss_dssp CBSSCGGGBCSSEEEEECCCCTTCCHHHHHHHHHHTTEECEECCCSSSCEEEEECCSSCCHHHHHHHHHHHHH
T ss_pred eeccCchhcCceEEEEEcCccCCCCHHHHHHHHHHCCEEEECCcCCCCCEEEEecCCCCCHHHHHHHHHHHHH
Confidence 77643 1222 3555554 3 788999999999988653 357899999999999999999999974
|
| >3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: LLP; 1.50A {Homo sapiens} SCOP: c.67.1.1 PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=1.4e-18 Score=200.96 Aligned_cols=305 Identities=13% Similarity=0.105 Sum_probs=195.7
Q ss_pred hhHHHHHHHHHHHHHHHhCCC--c-cc-eecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcE
Q 001989 628 QGYQEMFNNLGEWLCTITGFD--S-FS-LQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMK 703 (985)
Q Consensus 628 ~G~~~~~~e~~~~la~l~G~~--~-~~-~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~ 703 (985)
.|..++.+++.+++.+.+|.+ . .. ++.++|++++..++.++ ..++++|+++.+.|..+...++..|.+
T Consensus 67 ~g~~~lr~~la~~~~~~~g~~~~~~~~i~~~~g~~~a~~~~~~~~--------~~~gd~vl~~~p~~~~~~~~~~~~g~~ 138 (422)
T 3fvs_A 67 FGYPPLTKILASFFGELLGQEIDPLRNVLVTVGGYGALFTAFQAL--------VDEGDEVIIIEPFFDCYEPMTMMAGGR 138 (422)
T ss_dssp TCCHHHHHHHHHHHHHHHTCCCCHHHHEEEESHHHHHHHHHHHHH--------CCTTCEEEEEESCCTTHHHHHHHTTCE
T ss_pred CCCHHHHHHHHHHHHHhhCCCCCCCCcEEEECChHHHHHHHHHHH--------cCCCCEEEEcCCCchhhHHHHHHcCCE
Confidence 455566667777777777754 3 23 45566666664444332 146789999888887777778889999
Q ss_pred EEEEcCCC----C--------CCCCHHHHHHHHHhcCCCEEEEEEEcCC-Ccccccc--CHHHHHHHHHHcCCEEEEEcc
Q 001989 704 IVSVGTDA----K--------GNINIEELRKAAEANRDNLSTLMVTYPS-THGVYEE--GIDEICKIIHDNGGQVYMDGA 768 (985)
Q Consensus 704 vv~v~~d~----~--------g~iD~e~L~~~i~~~~~~t~~Vvv~~pn-~~G~i~~--di~eI~~la~~~galliVD~a 768 (985)
++.+|+++ + +.+|+++|+++++ +++++|++++|+ ++|.+.+ ++++|+++|+++|+++++|++
T Consensus 139 ~~~~~~~~~~~~~G~~~~~~~~~~d~~~l~~~~~---~~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~ 215 (422)
T 3fvs_A 139 PVFVSLKPGPIQNGELGSSSNWQLDPMELAGKFT---SRTKALVLNTPNNPLGKVFSREELELVASLCQQHDVVCITDEV 215 (422)
T ss_dssp EEEEECBCCCCCSSSCCBGGGSBCCHHHHHTTCC---TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECT
T ss_pred EEEEecccccccccccccccCCCCCHHHHHhhcC---CCceEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCcEEEEEcc
Confidence 99999876 3 3689999999987 789999999995 6999862 599999999999999999999
Q ss_pred ccccc-cCC--CC----CCccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCC
Q 001989 769 NMNAQ-VGL--TS----PGYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGT 841 (985)
Q Consensus 769 ~~~~~-~~l--~~----pg~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~ 841 (985)
|.... .+- .. +...+.++++.|++|+|+. .|.++|++++++++.+.+.... . ..+.+
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~g~----~G~r~G~~~~~~~~~~~~~~~~-~-----------~~~~~ 279 (422)
T 3fvs_A 216 YQWMVYDGHQHISIASLPGMWERTLTIGSAGKTFSA----TGWKVGWVLGPDHIMKHLRTVH-Q-----------NSVFH 279 (422)
T ss_dssp TTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHHTC----GGGCCEEEECCHHHHHHHHHHH-H-----------TTTCC
T ss_pred chhhccCCCCCCChhhcccccCcEEEEecchhccCC----ccceEEEEEeCHHHHHHHHHHH-h-----------hccCC
Confidence 84211 110 01 1123455888899999954 3678999998877655432100 0 00111
Q ss_pred CCCcchhhhHHHHHHHHHHHH------hcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccc
Q 001989 842 IAAAPWGSALILPISYTYIAM------MGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKN 914 (985)
Q Consensus 842 i~s~~~g~~~~~~~a~a~l~~------lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~ 914 (985)
. +.....++.+++.. ...+.+.+..++..++++++.+.|++ ++.+.. +.+..+ +.++++....
T Consensus 280 ~------~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~--~~~~~~--~~~~~~~~~~ 349 (422)
T 3fvs_A 280 C------PTQSQAAVAESFEREQLLFRQPSSYFVQFPQAMQRCRDHMIRSLQSVGLKPII--PQGSYF--LITDISDFKR 349 (422)
T ss_dssp C------CHHHHHHHHHHHHHHHHTTTCTTCHHHHHHHHHHHHHHHHHHHHHTTTCEEEB--CSBSSE--EEEECHHHHH
T ss_pred C------CcHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHcCCeecC--CCeeeE--EEEechhhcc
Confidence 1 11222223333432 12345666777788889999999987 444322 222222 3344431000
Q ss_pred cC----C---CC-HHHHHHHHH-HCCCccCC-CCC-------CCCCEEEEeccCCCCHHHHHHHHccCChhHHHHh
Q 001989 915 TA----G---IE-PEDVAKRLM-DYGFHGPT-MSW-------PVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHR 973 (985)
Q Consensus 915 ~~----g---~~-~~~v~~~L~-~~Gi~~~~-~~~-------p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~ 973 (985)
.. + .. ..++++.|. ++||.+.. ..+ ...+.+||+++. ++++|++ +++.|++++++
T Consensus 350 ~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~~g~~f~~~~~~~~~~~~iRis~~~--~~e~i~~--~l~~l~~~l~~ 421 (422)
T 3fvs_A 350 KMPDLPGAVDEPYDRRFVKWMIKNKGLVAIPVSIFYSVPHQKHFDHYIRFCFVK--DEATLQA--MDEKLRKWKVE 421 (422)
T ss_dssp HCCCCCCCTTCCHHHHHHHHHHHHHCEECEEGGGGSCHHHHTTSCSEEEEECCC--CHHHHHH--HHHHHHHHHHC
T ss_pred cccccccccccccHHHHHHHHHHhcCEEEeCcHHhcCCcCCCCCCCeEEEEecC--CHHHHHH--HHHHHHHHHhh
Confidence 00 0 00 457788755 46998643 111 125899999876 9999999 77888887764
|
| >2x3l_A ORN/Lys/Arg decarboxylase family protein; lyase; HET: LLP; 2.00A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.79 E-value=3.4e-19 Score=208.41 Aligned_cols=286 Identities=12% Similarity=0.055 Sum_probs=188.0
Q ss_pred HHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcC--CC
Q 001989 634 FNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGT--DA 711 (985)
Q Consensus 634 ~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~--d~ 711 (985)
+.++++++++ +|.+...++.++|++|+.++++++. +++++|++++..|.++...+...|++++.++. ++
T Consensus 59 ~~~~~~~la~-~g~~~~v~~~~G~t~a~~~~~~a~~--------~~gd~Vlv~~~~h~s~~~~~~~~G~~~~~v~~~~~~ 129 (446)
T 2x3l_A 59 ILKSMKQVEK-HSDYDGYFLVNGTTSGILSVIQSFS--------QKKGDILMARNVHKSVLHALDISQQEGHFIETHQSP 129 (446)
T ss_dssp HHHHHHHHCS-CTTEEEEEESSHHHHHHHHHHHTTT--------TSSSCEEECTTCCHHHHHHHHHHTCCEEECEEEECT
T ss_pred HHHHHHHHHh-cCCCceEEEeCCHHHHHHHHHHHhc--------CCCCEEEEecCccHHHHHHHHHcCCeEEEEeCeecc
Confidence 5688999999 9987444556666677755554431 36789999999898888778889999999988 65
Q ss_pred C----CCCCHHHHHHHHHhcCCCEEEEEEEcCCCccccccCHHHHHHHHHHcCCEEEEEccccccccCCC----CCCccC
Q 001989 712 K----GNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLT----SPGYIG 783 (985)
Q Consensus 712 ~----g~iD~e~L~~~i~~~~~~t~~Vvv~~pn~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~----~pg~~g 783 (985)
+ +.+|+++| ++ +++++|++++||++|.+. |+++|+++|+++|+++++|++|.. ...+. ....++
T Consensus 130 ~~~~~~~~d~~~l---~~---~~~~~v~~~~~n~~G~~~-~l~~I~~l~~~~~~~livDea~~~-~~~f~~~~~~~~~~g 201 (446)
T 2x3l_A 130 LTNHYNKVNLSRL---NN---DGHKLVVLTYPNYYGETF-NVEEVIKSLHQLNIPVLIDEAHGA-HFGLQGFPDSTLNYQ 201 (446)
T ss_dssp TTSSEEEEEC-------------CCEEEEESSCTTSCCC-CHHHHHHHHHHTTCCEEEECTTCT-TTTSTTSCCCGGGGT
T ss_pred ccCcCCCCCHHHH---cC---CCceEEEEECCCCCeEec-CHHHHHHHHHhcCCeEEEcchhhh-hhccCCCCCChHHcC
Confidence 4 56888887 44 678999999998999998 899999999999999999999853 22121 223457
Q ss_pred CcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHh
Q 001989 784 ADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMM 863 (985)
Q Consensus 784 ~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~l 863 (985)
+|+++.|+||+++ |+.|+|++++++++.+..+-...+.. .. ++. . + +....++. +.+..+
T Consensus 202 ~Di~~~S~~K~l~-----~~~g~g~l~~~~~~i~~~~~~~~~~~-------~~--~~s-~-~-~~~~aal~---~a~~~l 261 (446)
T 2x3l_A 202 ADYVVQSFHKTLP-----ALTMGSVLYIHKNAPYRENIIEYLSY-------FQ--TSS-P-S-YLIMASLE---SAAQFY 261 (446)
T ss_dssp CSEEEECHHHHSS-----SCTTCEEEEEETTCTTHHHHHHHHHH-------HS--CSS-C-C-HHHHHHHH---HHHHHH
T ss_pred CCEEEECCccccc-----cccccEEEEEcCCcCCHHHHHHHHHH-------Hc--CCC-c-h-HHHHHHHH---HHHHHH
Confidence 9999999999874 33478999998775441000000000 00 001 1 1 11111222 223333
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHhhccCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCCCCCCC
Q 001989 864 GSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPG 943 (985)
Q Consensus 864 g~eGl~~~~~~~~~~a~~l~~~L~~g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~~p~~~ 943 (985)
...|..+..++..+++++++++ ++.+... .++.. +.+.++ +.+..++.+.|.++||.+.... .+
T Consensus 262 ~~~g~~~~~~~~~~l~~~l~~~---g~~~~~~--~~~~~--l~i~~~------~~~~~~l~~~L~~~GI~v~~~g---~~ 325 (446)
T 2x3l_A 262 KTYDSTLFFAKRAQLIECLENK---GFEMLQV--DDPLK--LLIKYE------GFTGHDIQNWFMNAHIYLELAD---DY 325 (446)
T ss_dssp HHCCCHHHHHHHHHHHHHHHHH---TCEEEEC--SSTTE--EEEECT------TSCHHHHHHHHHHTTEEESEEC---SS
T ss_pred HHhCHHHHHHHHHHHHHHHHHc---CCEECcC--CCCeE--EEEEeC------CcCHHHHHHHHHHCCCEEEecC---CC
Confidence 3333333455666777777766 4554321 12222 445553 4678899999999999874221 36
Q ss_pred EEEEeccCCCCHHHHHHHHccCChhHHHHhhc
Q 001989 944 TLMIEPTESESKSWTGIVMLSSPSEKKLHRLK 975 (985)
Q Consensus 944 ~lris~t~~~t~eeId~~~~~~~l~~~~~~~~ 975 (985)
.+|++++..+|++|+ + +++.|+++++.+.
T Consensus 326 ~iRi~~~~~~t~e~i-~--l~~aL~~~~~~~~ 354 (446)
T 2x3l_A 326 QALAILPLWHHDDTY-L--FDSLLRKIEDMIL 354 (446)
T ss_dssp CEEEECCCCCTTCCC-C--HHHHHHHHHTCCC
T ss_pred EEEEEeecCCCHHHH-H--HHHHHHHHHHhhc
Confidence 899999999999999 9 7788888876653
|
| >2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.79 E-value=1.6e-18 Score=199.92 Aligned_cols=299 Identities=11% Similarity=0.032 Sum_probs=196.3
Q ss_pred hhHHHHHHHHHHHHHHHhCCC----ccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcE
Q 001989 628 QGYQEMFNNLGEWLCTITGFD----SFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMK 703 (985)
Q Consensus 628 ~G~~~~~~e~~~~la~l~G~~----~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~ 703 (985)
+|..++.+.+.+++.+.+|.+ ...++.++|++++..++.++. .++++|+++.+.|..+...++..|++
T Consensus 85 ~g~~~lr~~ia~~~~~~~g~~~~~~~~v~~t~G~~~al~~~~~~l~--------~~gd~Vl~~~p~y~~~~~~~~~~g~~ 156 (404)
T 2o1b_A 85 HGKEAFKQAIVDFYQRQYNVTLDKEDEVCILYGTKNGLVAVPTCVI--------NPGDYVLLPDPGYTDYLAGVLLADGK 156 (404)
T ss_dssp TCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESSHHHHHHHHHHHHC--------CTTCEEEEEESCCSSHHHHHHHTTCE
T ss_pred CCCHHHHHHHHHHHHHHhCCCCCCcccEEEcCCcHHHHHHHHHHhc--------CCCCEEEEcCCCchhHHHHHHHCCCE
Confidence 344455555555555556975 223555666666654444331 36789999888787777778889999
Q ss_pred EEEEcCCCC-CCCCHHHHHHHHHhcCCCEEEEEEEcCC-Ccccccc--CHHHHHHHHHHcCCEEEEEccccccc-cC-CC
Q 001989 704 IVSVGTDAK-GNINIEELRKAAEANRDNLSTLMVTYPS-THGVYEE--GIDEICKIIHDNGGQVYMDGANMNAQ-VG-LT 777 (985)
Q Consensus 704 vv~v~~d~~-g~iD~e~L~~~i~~~~~~t~~Vvv~~pn-~~G~i~~--di~eI~~la~~~galliVD~a~~~~~-~~-l~ 777 (985)
++.+|.+++ ..+|+++|+++++ +++++|++++|+ ++|.+.+ ++++|.++|+++|+++++|+++.... .+ ..
T Consensus 157 ~~~v~~~~~~~~~d~~~l~~~l~---~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~ 233 (404)
T 2o1b_A 157 PVPLNLEPPHYLPDWSKVDSQII---DKTKLIYLTYPNNPTGSTATKEVFDEAIAKFKGTDTKIVHDFAYGAFGFDAKNP 233 (404)
T ss_dssp EEEEECCTTTCCCCGGGSCHHHH---HHEEEEEECSSCTTTCCCCCHHHHHHHHHHHTTSSCEEEEECTTTTCBSSSCCC
T ss_pred EEEeccCcccCcCCHHHHHHhhc---cCceEEEEcCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCC
Confidence 999998764 4689999999997 689999999885 6898862 48899999999999999999985321 11 00
Q ss_pred CCCc----cCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHH
Q 001989 778 SPGY----IGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALIL 853 (985)
Q Consensus 778 ~pg~----~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~ 853 (985)
.... .+.|+++.|+||+|+.| |.++|++++++++.+.+...... .+.+. +....
T Consensus 234 ~~~~~~~~~~~~i~~~s~sK~~g~~----G~r~G~~~~~~~~~~~l~~~~~~------------~~~~~------~~~~~ 291 (404)
T 2o1b_A 234 SILASENGKDVAIEIYSLSKGYNMS----GFRVGFAVGNKDMIQALKKYQTH------------TNAGM------FGALQ 291 (404)
T ss_dssp CGGGSTTHHHHEEEEEESTTTTTCG----GGCCEEEEECHHHHHHHHHHHHH------------HCCCC------CHHHH
T ss_pred ChhhcCCCCCCEEEEEecchhccCc----hhheEeEecCHHHHHHHHHHHhh------------ccCCC------CHHHH
Confidence 1111 24578899999998543 56789999987766544211000 00111 11222
Q ss_pred HHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHH-HCC
Q 001989 854 PISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLM-DYG 931 (985)
Q Consensus 854 ~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~-~~G 931 (985)
.++.++|.. +.+.+++..++..++++++.+.|++ ++.+. .+.+..+ +.+.++ .+.+..++.++|. ++|
T Consensus 292 ~a~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~--~~~~g~~--~~~~~~-----~~~~~~~l~~~l~~~~g 361 (404)
T 2o1b_A 292 DAAIYALNH-YDDFLEEQSNVFKTRRDRFEAMLAKADLPFV--HAKGGIY--VWLETP-----PGYDSEQFEQFLVQEKS 361 (404)
T ss_dssp HHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHHHHHTTCCEE--CCCBSSE--EEEECC-----TTCCHHHHHHHHHHHHC
T ss_pred HHHHHHHhc-CHHHHHHHHHHHHHHHHHHHHHHHhcCCeec--CCCcceE--EEEeCC-----CCCCHHHHHHHHHHHCC
Confidence 223344443 3556677777788889999999987 45442 2222222 345554 2456788999987 579
Q ss_pred CccCCC-CCC--CCCEEEEeccCCCCHHHHHHHHccCChhHHHHh
Q 001989 932 FHGPTM-SWP--VPGTLMIEPTESESKSWTGIVMLSSPSEKKLHR 973 (985)
Q Consensus 932 i~~~~~-~~p--~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~ 973 (985)
|.+... .+. ..+++||+++. ++++|++ +++.|++++++
T Consensus 362 i~v~~g~~f~~~~~~~iRis~~~--~~e~l~~--~l~~l~~~l~~ 402 (404)
T 2o1b_A 362 ILVAPGKPFGENGNRYVRISLAL--DDQKLDE--AAIRLTELAYL 402 (404)
T ss_dssp EECEESGGGCGGGTTEEEEECCS--CTTHHHH--HHHHHHGGGGG
T ss_pred EEEeCchhhCcCCCCeEEEEEcC--CHHHHHH--HHHHHHHHHHh
Confidence 987542 222 24799999986 7889999 66777776654
|
| >3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=3.1e-18 Score=194.88 Aligned_cols=295 Identities=13% Similarity=0.094 Sum_probs=194.5
Q ss_pred HHHHHHHHHHh-CCCccc-eecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcCCC-
Q 001989 635 NNLGEWLCTIT-GFDSFS-LQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDA- 711 (985)
Q Consensus 635 ~e~~~~la~l~-G~~~~~-~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~d~- 711 (985)
.++++.+++++ +.+... +++++|++|+..++.++. .++|+|+++.+.|..+...++..|++++.+|+++
T Consensus 66 ~~l~~~la~~~~~~~~~~v~~~~g~~~a~~~~~~~l~--------~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~ 137 (375)
T 3op7_A 66 PAFKKSVSQLYTGVKPEQILQTNGATGANLLVLYSLI--------EPGDHVISLYPTYQQLYDIPKSLGAEVDLWQIEEE 137 (375)
T ss_dssp HHHHHHHHTTSSSCCGGGEEEESHHHHHHHHHHHHHC--------CTTCEEEEEESSCTHHHHHHHHTTCEEEEEEEEGG
T ss_pred HHHHHHHHHHhccCChhhEEEcCChHHHHHHHHHHhc--------CCCCEEEEeCCCchhHHHHHHHcCCEEEEEecccc
Confidence 36778888877 355443 555667777755544331 4788999988888777777888999999999864
Q ss_pred -CCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccC---HHHHHHHHHHcCCEEEEEcccccccc-CCCCC-CccCC
Q 001989 712 -KGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEG---IDEICKIIHDNGGQVYMDGANMNAQV-GLTSP-GYIGA 784 (985)
Q Consensus 712 -~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~d---i~eI~~la~~~galliVD~a~~~~~~-~l~~p-g~~g~ 784 (985)
++.+|+++|+++++ +++++|++++| |++|.+. | +++|.++|+++|+++++|+++..... ++... ..++.
T Consensus 138 ~~~~~d~~~l~~~l~---~~~~~v~~~~~~nptG~~~-~~~~l~~i~~la~~~~~~li~De~~~~~~~~~~~~~~~~~~~ 213 (375)
T 3op7_A 138 NGWLPDLEKLRQLIR---PTTKMICINNANNPTGAVM-DRTYLEELVEIASEVGAYILSDEVYRSFSELDVPSIIEVYDK 213 (375)
T ss_dssp GTTEECHHHHHHHCC---TTCCEEEEESSCTTTCCCC-CHHHHHHHHHHHHTTTCEEEEECCSCCCSSSCCCCHHHHCTT
T ss_pred CCCCCCHHHHHHhhc---cCCeEEEEcCCCCCCCCCC-CHHHHHHHHHHHHHcCCEEEEEcccccccccCCCchhhhcCC
Confidence 34589999999997 78999999998 5799987 7 99999999999999999999742111 11000 12345
Q ss_pred cEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhc
Q 001989 785 DVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMG 864 (985)
Q Consensus 785 Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg 864 (985)
++++.|++|+|+.| |.++|++++++++.+.+..... ....+. +.....++.+.+.. .
T Consensus 214 ~i~~~s~sK~~~~~----G~r~G~v~~~~~l~~~~~~~~~--------------~~~~~~----~~~~~~~~~~~l~~-~ 270 (375)
T 3op7_A 214 GIAVNSLSKTYSLP----GIRIGWVAANHQVTDILRDYRD--------------YTMICA----GVFDDLVAQLALAH-Y 270 (375)
T ss_dssp EEEEEESSSSSSCG----GGCCEEEECCHHHHHHHTTTGG--------------GTTSCC----CHHHHHHHHHHHHT-H
T ss_pred EEEEeEChhhcCCc----ccceEEEEeCHHHHHHHHHHHh--------------hhccCC----CcHHHHHHHHHHhc-c
Confidence 68888999998543 5678999988777655432110 001111 11222223333432 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHH-HHCCCccCCC-CCCCC
Q 001989 865 SKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRL-MDYGFHGPTM-SWPVP 942 (985)
Q Consensus 865 ~eGl~~~~~~~~~~a~~l~~~L~~g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L-~~~Gi~~~~~-~~p~~ 942 (985)
.+.+++..++..++++++.+.|++...+....+.+..+ +.+.++ .+.+..+++++| .++||.+... .+..+
T Consensus 271 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~--~~~~~~-----~~~~~~~~~~~ll~~~gi~v~~g~~~~~~ 343 (375)
T 3op7_A 271 QEILERNRHILEENLAILDQWIEEEPLVSYIRPAVVST--SFVKIA-----VDMPMEDFCLQLLQEHGVLLVPGNRFERD 343 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCTTEEECCCSSSSC--EEEEEC-----CSSCHHHHHHHHHHHHCEECEEGGGGTCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCCceEecCCCeEE--EeEEcC-----CCCCHHHHHHHHHHhCCEEEeChhhhCCC
Confidence 23445555566788888988887632332222222222 234443 245678888888 5789987532 23335
Q ss_pred CEEEEeccCCCCHHHHHHHHccCChhHHHHhhc
Q 001989 943 GTLMIEPTESESKSWTGIVMLSSPSEKKLHRLK 975 (985)
Q Consensus 943 ~~lris~t~~~t~eeId~~~~~~~l~~~~~~~~ 975 (985)
+.+|++++. +.++|++ +++.|++++++++
T Consensus 344 ~~iRi~~~~--~~~~i~~--~l~~l~~~l~~~~ 372 (375)
T 3op7_A 344 GYVRLGFAC--EQETLIK--GLEKLSQFLRRFD 372 (375)
T ss_dssp TEEEECCCS--CHHHHHH--HHHHHHHHHGGGC
T ss_pred CeEEEEecC--CHHHHHH--HHHHHHHHHHHHh
Confidence 899999865 4489999 8888988887664
|
| >3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491} | Back alignment and structure |
|---|
Probab=99.78 E-value=3.6e-18 Score=195.72 Aligned_cols=294 Identities=11% Similarity=0.036 Sum_probs=192.1
Q ss_pred hhHHHHHHHHHHHHHHHhCCC---cc-c-eecCcHHHHHHHHHHHHHHHHHhcCCCCC-----CEEEEcCCCCcccHHHH
Q 001989 628 QGYQEMFNNLGEWLCTITGFD---SF-S-LQPNAGAAGEYAGLMVIRAYHKARGDHHR-----NVCIIPVSAHGTNPATA 697 (985)
Q Consensus 628 ~G~~~~~~e~~~~la~l~G~~---~~-~-~~~~sGa~a~~a~l~air~~~~~~g~~~~-----~~IIv~~~~Hg~~~~~a 697 (985)
.|..++.+++.+++.+.+|.+ .. . ++.++|++++..++.++. .++ ++|+++.+.|..+...+
T Consensus 66 ~g~~~lr~~la~~l~~~~g~~~~~~~~~i~~t~g~~~al~~~~~~~~--------~~g~~~~~d~vl~~~p~~~~~~~~~ 137 (396)
T 3jtx_A 66 AGLPELRQACANWLKRRYDGLTVDADNEILPVLGSREALFSFVQTVL--------NPVSDGIKPAIVSPNPFYQIYEGAT 137 (396)
T ss_dssp TCCHHHHHHHHHHHHHHTTTCCCCTTTSEEEESSHHHHHHHHHHHHC--------CC---CCCCEEEEEESCCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHhcCCCCCCCCCeEEEcCCcHHHHHHHHHHHh--------CCCCccCCCEEEEcCCCcHhHHHHH
Confidence 455677777888888888853 44 4 445566666654444332 233 78999888776666677
Q ss_pred HHCCcEEEEEcCCCC-CCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccc--cCHHHHHHHHHHcCCEEEEEccccccc
Q 001989 698 AMCGMKIVSVGTDAK-GNINIEELRKAAEANRDNLSTLMVTYP-STHGVYE--EGIDEICKIIHDNGGQVYMDGANMNAQ 773 (985)
Q Consensus 698 ~~~G~~vv~v~~d~~-g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~--~di~eI~~la~~~galliVD~a~~~~~ 773 (985)
+..|++++.+|++++ ..+|+++|+++++ +++++|++++| |++|.+. .++++|+++|+++|+++++|+++....
T Consensus 138 ~~~g~~~~~v~~~~~g~~~d~~~l~~~~~---~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~ 214 (396)
T 3jtx_A 138 LLGGGEIHFANCPAPSFNPDWRSISEEVW---KRTKLVFVCSPNNPSGSVLDLDGWKEVFDLQDKYGFIIASDECYSEIY 214 (396)
T ss_dssp HHTTCEEEEEECCTTTCCCCGGGSCHHHH---HTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHCCEEEEECTTTTCC
T ss_pred HHcCCEEEEeecCCCCCccCHHHHHHhhc---cCcEEEEEECCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEEccccccc
Confidence 889999999998654 4689999999998 68999999999 4699986 135569999999999999999985211
Q ss_pred -cCCCCC-C----------ccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCC
Q 001989 774 -VGLTSP-G----------YIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGT 841 (985)
Q Consensus 774 -~~l~~p-g----------~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~ 841 (985)
.+ ..+ . ..+.++++.|++|+|+. .|.++|+++.++++.+.+..... ..+.+
T Consensus 215 ~~~-~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~----~G~r~G~~~~~~~~~~~~~~~~~------------~~~~~ 277 (396)
T 3jtx_A 215 FDG-NKPLGCLQAAAQLGRSRQKLLMFTSLSKRSNV----PGLRSGFVAGDAELLKNFLLYRT------------YHGSA 277 (396)
T ss_dssp STT-CCCCCHHHHHHHTTCCCTTEEEEEESTTTSSC----GGGCCEEEEECHHHHHHHHHHHH------------HHTCC
T ss_pred cCC-CCCchHHhhhhhcccccCcEEEEeccccccCC----cccceEEEEeCHHHHHHHHHHHh------------hcccC
Confidence 11 011 1 25677889999998754 36678999988776654421100 00011
Q ss_pred CCCcchhhhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhccCCeeecCCCCceeeEEEEEecCccccCCCCHH
Q 001989 842 IAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPE 921 (985)
Q Consensus 842 i~s~~~g~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~ 921 (985)
. +.....++.+.+.. .+.+.+..++..++.+++.+.|++.+.+. .+.+..+ +.++++ +.+..
T Consensus 278 ~------~~~~~~a~~~~l~~--~~~~~~~~~~~~~~~~~l~~~l~~~~~~~--~~~~~~~--~~~~~~------~~~~~ 339 (396)
T 3jtx_A 278 M------SIPVQRASIAAWDD--EQHVIDNRRLYQEKFERVIPILQQVFDVK--LPDASFY--IWLKVP------DGDDL 339 (396)
T ss_dssp C------CHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHHHHHHHTTTSCCC--CCSSSSE--EEEECT------TSCHH
T ss_pred C------CHHHHHHHHHHhCC--HHHHHHHHHHHHHHHHHHHHHHHhcCCcc--CCCeeEE--EEEECC------CCCHH
Confidence 1 11122222233332 34566666777888888999987643332 2222222 345654 24678
Q ss_pred HHHHHHH-HCCCccCCCC-C--------CCCCEEEEeccCCCCHHHHHHHHccCChhHHH
Q 001989 922 DVAKRLM-DYGFHGPTMS-W--------PVPGTLMIEPTESESKSWTGIVMLSSPSEKKL 971 (985)
Q Consensus 922 ~v~~~L~-~~Gi~~~~~~-~--------p~~~~lris~t~~~t~eeId~~~~~~~l~~~~ 971 (985)
+++++|. ++||.+.... + +..+.+||+++. +++||++ +++.|++++
T Consensus 340 ~~~~~l~~~~gi~v~~g~~~~~~~~~~~~~~~~iRis~~~--~~~~i~~--~l~~l~~~l 395 (396)
T 3jtx_A 340 AFARNLWQKAAIQVLPGRFLARDTEQGNPGEGYVRIALVA--DVATCVK--AAEDIVSLY 395 (396)
T ss_dssp HHHHHHHHHHCEECEEGGGGCCCCTTCCTTTTEEEEECCS--CHHHHHH--HHHHHHHHC
T ss_pred HHHHHHHHHCCEEEeCChHhCCcccccCCCCCeEEEEEcC--CHHHHHH--HHHHHHHHh
Confidence 8999985 4699874311 1 124899999876 9999999 667776653
|
| >3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP, cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP; 2.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.4e-18 Score=203.25 Aligned_cols=301 Identities=13% Similarity=0.110 Sum_probs=194.2
Q ss_pred hhHHHHHHHHHHHHHHHhCCC--ccc-eecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEE
Q 001989 628 QGYQEMFNNLGEWLCTITGFD--SFS-LQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKI 704 (985)
Q Consensus 628 ~G~~~~~~e~~~~la~l~G~~--~~~-~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~v 704 (985)
+|..++.+++.+++.+.+|.+ ... ++.++|++|+..++.++. .++++||++++.|..+...++..|+++
T Consensus 95 ~g~~~lr~~ia~~l~~~~g~~~~~~~v~~t~G~~~al~~~~~~l~--------~~gd~Vlv~~p~y~~~~~~~~~~g~~~ 166 (447)
T 3b46_A 95 RGRPSLINSLIKLYSPIYNTELKAENVTVTTGANEGILSCLMGLL--------NAGDEVIVFEPFFDQYIPNIELCGGKV 166 (447)
T ss_dssp TCCHHHHHHHHHHHTTTTTSCCCGGGEEEESHHHHHHHHHHHHHC--------CTTCEEEEEESCCTTHHHHHHHTTCEE
T ss_pred CCCHHHHHHHHHHHHHhcCCCCChhhEEEeCCHHHHHHHHHHHHc--------CCCCEEEEeCCCchhHHHHHHHcCCEE
Confidence 455555666666666656653 233 445666666655544331 467899998888888877888899999
Q ss_pred EEEcCCC------------CCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccc--cCHHHHHHHHHHcCCEEEEEccc
Q 001989 705 VSVGTDA------------KGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYE--EGIDEICKIIHDNGGQVYMDGAN 769 (985)
Q Consensus 705 v~v~~d~------------~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~--~di~eI~~la~~~galliVD~a~ 769 (985)
+.+|.++ ++.+|+++|+++++ +++++|++++| |++|.+. .++++|+++|+++|+++++|+++
T Consensus 167 ~~v~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~---~~~~~v~l~~p~nptG~~~~~~~l~~i~~l~~~~~~~li~De~~ 243 (447)
T 3b46_A 167 VYVPINPPKELDQRNTRGEEWTIDFEQFEKAIT---SKTKAVIINTPHNPIGKVFTREELTTLGNICVKHNVVIISDEVY 243 (447)
T ss_dssp EEEEEECCGGGGTSCBCSTTSEECHHHHHTTCC---TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTT
T ss_pred EEEeCCCccccccccccccCcccCHHHHHHhhc---cCCeEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCcEEEEeccc
Confidence 9998754 35799999999997 78999999998 5699883 26999999999999999999998
Q ss_pred ccc-ccC-CCC-----CCccCCcEEEeCCcccccccCCCCCCceEEEEE-cccccCcCCCCccccCCCCCCCCCCCCCCC
Q 001989 770 MNA-QVG-LTS-----PGYIGADVCHLNLHKTFCIPHGGGGPGMGPIGV-KKHLAPFLPSHPVVSTGGIPAPEKSQPLGT 841 (985)
Q Consensus 770 ~~~-~~~-l~~-----pg~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~-~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~ 841 (985)
... ..+ ... ++.++.|+++.|+||+|++ .|.++|++++ ++++.+.+...... .+.+
T Consensus 244 ~~~~~~g~~~~~~~~~~~~~~~~i~i~S~sK~~~~----~G~riG~~~~~~~~l~~~l~~~~~~------------~~~~ 307 (447)
T 3b46_A 244 EHLYFTDSFTRIATLSPEIGQLTLTVGSAGKSFAA----TGWRIGWVLSLNAELLSYAAKAHTR------------ICFA 307 (447)
T ss_dssp TTCBCSSCCCCGGGSCHHHHTTEEEEEEHHHHTTC----TTSCCEEEECSCHHHHHHHHHHHHH------------HTSS
T ss_pred hhcccCCCCcCHHHcCCCCCCcEEEEecCchhcCC----cchhhEEEEeCCHHHHHHHHHHHhh------------ccCC
Confidence 521 111 001 1234689999999999864 3567999999 77665443210000 0011
Q ss_pred CCCcchhhhHHHHHHHHHHHHhc-HHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccC---
Q 001989 842 IAAAPWGSALILPISYTYIAMMG-SKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTA--- 916 (985)
Q Consensus 842 i~s~~~g~~~~~~~a~a~l~~lg-~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~--- 916 (985)
.+ .....++.++|.... .+.+.+..++..++++++.+.|++ ++.+. .+.+..+ +.++++....+.
T Consensus 308 ~~------~~~~~a~~~aL~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~--~~~~g~~--~~~~~~~~~~p~~~~ 377 (447)
T 3b46_A 308 SP------SPLQEACANSINDALKIGYFEKMRQEYINKFKIFTSIFDELGLPYT--APEGTYF--VLVDFSKVKIPEDYP 377 (447)
T ss_dssp CC------HHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHTCCEE--CCSBSSE--EEEECTTCCCCTTCC
T ss_pred CC------hHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHHHHHHHHHCCCeec--CCCeeEE--EEEecccccCccccc
Confidence 11 111222334444332 234566667788889999999987 55543 2222222 345554210000
Q ss_pred -------CCCHHHHHHHHH-HCCCccCCC-CCC-------CCCEEEEeccCCCCHHHHHHHHccCChhH
Q 001989 917 -------GIEPEDVAKRLM-DYGFHGPTM-SWP-------VPGTLMIEPTESESKSWTGIVMLSSPSEK 969 (985)
Q Consensus 917 -------g~~~~~v~~~L~-~~Gi~~~~~-~~p-------~~~~lris~t~~~t~eeId~~~~~~~l~~ 969 (985)
+.+..+++++|. ++||.+... .|. ..+++||++.. ++++|++ .++.|++
T Consensus 378 ~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~~~~iRls~~~--~~e~l~~--~~~~l~~ 442 (447)
T 3b46_A 378 YPEEILNKGKDFRISHWLINELGVVAIPPTEFYIKEHEKAAENLLRFAVCK--DDAYLEN--AVERLKL 442 (447)
T ss_dssp CCGGGSSSCHHHHHHHHHHHHTCEECBCGGGGSCGGGGGGGTTEEEEECCS--CHHHHHH--HHHHGGG
T ss_pred cccccccCCCHHHHHHHHHHhCCEEEECchHhCCCCccCCCCCEEEEEEeC--CHHHHHH--HHHHHHH
Confidence 124568998886 579987532 221 15799999974 8999999 6566654
|
| >3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A, one-carbon metabolism, pyridoxa phosphate, structural genomics; 1.60A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=99.78 E-value=5.4e-18 Score=195.96 Aligned_cols=294 Identities=15% Similarity=0.150 Sum_probs=184.9
Q ss_pred HHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCccc---HHHHHHCCc--EEEEEcCCC
Q 001989 637 LGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTN---PATAAMCGM--KIVSVGTDA 711 (985)
Q Consensus 637 ~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~---~~~a~~~G~--~vv~v~~d~ 711 (985)
.++++++++|.+...+.+++|++|++.++.++. .++++|++++..|+.+ .......|. +++.++.++
T Consensus 83 a~~~~~~~~~~~~~~v~~~~Gs~a~~~al~~~~--------~~gd~Vi~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 154 (425)
T 3ecd_A 83 AIERVKRLFNAGHANVQPHSGAQANGAVMLALA--------KPGDTVLGMSLDAGGHLTHGAKPALSGKWFNALQYGVSR 154 (425)
T ss_dssp HHHHHHHHHTCSEEECCCSSHHHHHHHHHHHHC--------CTTCEEEEECC------------------CEEEEECCCT
T ss_pred HHHHHHHHhCCCCceeecCchHHHHHHHHHHcc--------CCCCEEEEcccccccceecchhhhhcccceeeeecCCCc
Confidence 347889999998866667889887765554431 4788999988877652 222223444 666677663
Q ss_pred -CCCCCHHHHHHHHHhcCCCEEEEEEEcCCCccccccCHHHHHHHHHHcCCEEEEEccccccccCCC-CCCc-cCCcEEE
Q 001989 712 -KGNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLT-SPGY-IGADVCH 788 (985)
Q Consensus 712 -~g~iD~e~L~~~i~~~~~~t~~Vvv~~pn~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~-~pg~-~g~Di~~ 788 (985)
++.+|+++|++++++ +++++|++++|++ |... ++++|.++|+++|+++|+|++|..+...-. .+.. ..+|+++
T Consensus 155 ~~~~~d~~~l~~~i~~--~~~~~v~~~~~~~-~~~~-~l~~i~~l~~~~~~~li~De~~~~g~~~~~~~~~~~~~~di~~ 230 (425)
T 3ecd_A 155 DTMLIDYDQVEALAQQ--HKPSLIIAGFSAY-PRKL-DFARFRAIADSVGAKLMVDMAHIAGVIAAGRHANPVEHAHVVT 230 (425)
T ss_dssp TTSSCCHHHHHHHHHH--HCCSEEEEECSCC-CSCC-CHHHHHHHHHHHTCEEEEECGGGHHHHHTTSSCCGGGTCSEEE
T ss_pred ccCccCHHHHHHHHhh--cCCcEEEEccccC-CCcC-CHHHHHHHHHHcCCEEEEECcChHhhhhcccccCchhcCcEEE
Confidence 478999999999973 4678899987765 7676 899999999999999999999753332111 1111 1379999
Q ss_pred eCCcccccccCCCCCCceEEEEEcc-cccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHH
Q 001989 789 LNLHKTFCIPHGGGGPGMGPIGVKK-HLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKG 867 (985)
Q Consensus 789 ~s~hK~l~~p~g~GGPg~G~i~~~~-~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eG 867 (985)
.|+||+| +||.+|++++++ .+.+.+....... ..++.. ....+ ++.+.+.....++
T Consensus 231 ~s~sK~l------~g~~~g~~~~~~~~~~~~~~~~~~~~-----------~~~~~~-----~~~~~-a~~~a~~~~~~~~ 287 (425)
T 3ecd_A 231 STTHKTL------RGPRGGFVLTNDEEIAKKINSAVFPG-----------LQGGPL-----MHVIA-GKAVAFGEALTDD 287 (425)
T ss_dssp EESSGGG------CCCSCEEEEESCHHHHHHHHHHHC----------------CCC-----HHHHH-HHHHHHHHHTSHH
T ss_pred ecCCccc------CCCCcEEEEeCCHHHHHHHHhhhCcc-----------ccCCcc-----HHHHH-HHHHHHHHHHHHh
Confidence 9999998 357779999884 4443322110000 000100 11111 1223333334456
Q ss_pred HHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCCCC------
Q 001989 868 LTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWP------ 940 (985)
Q Consensus 868 l~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~~p------ 940 (985)
+.+..++..++++++.+.|++ ++.+..++. . .+.+.+.++. .+.+...+.+.|.++||.+.....|
T Consensus 288 ~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~-~--~~~~~~~~~~----~~~~~~~~~~~l~~~gi~v~~~~~p~~~~~~ 360 (425)
T 3ecd_A 288 FKTYIDRVLANAQALGDVLKAGGVDLVTGGT-D--NHLLLVDLRP----KGLKGAQVEQALERAGITCNKNGIPFDPEKP 360 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCEEGGGSC-S--SSEEEEECGG----GTCCHHHHHHHHHHTTEECEECCCTTCSSCT
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCeeccCCC-C--ceEEEEEeCC----CCCCHHHHHHHHHHcCCEecccccCCCCCCC
Confidence 777788888999999999987 555432111 1 2234455431 2457888999999999987532212
Q ss_pred -CCCEEEEeccC----CCCHHHHHHHHccCChhHHHHhh
Q 001989 941 -VPGTLMIEPTE----SESKSWTGIVMLSSPSEKKLHRL 974 (985)
Q Consensus 941 -~~~~lris~t~----~~t~eeId~~~~~~~l~~~~~~~ 974 (985)
..+.+|++++. ..+++||++ +++.|+++++..
T Consensus 361 ~~~~~iRi~~~~~~~~~~~~e~i~~--~~~~l~~~l~~~ 397 (425)
T 3ecd_A 361 TITSGIRLGTPAGTTRGFGAAEFRE--VGRLILEVFEAL 397 (425)
T ss_dssp TTCSEEEEESHHHHHTTCCHHHHHH--HHHHHHHHHHHH
T ss_pred CCccceeccchhheeccCCHHHHHH--HHHHHHHHHhcc
Confidence 23689999554 455999999 778888888765
|
| >3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.78 E-value=5.3e-18 Score=191.70 Aligned_cols=282 Identities=11% Similarity=0.063 Sum_probs=189.7
Q ss_pred HHHHHHHHHHhCCCccc-eecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcCCCCC
Q 001989 635 NNLGEWLCTITGFDSFS-LQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKG 713 (985)
Q Consensus 635 ~e~~~~la~l~G~~~~~-~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~d~~g 713 (985)
.++++++++++|.+... +++++|++++..+ ++. - ++|+++.+.|..+...++..|++++.+|.++++
T Consensus 64 ~~l~~~la~~~~~~~~~i~~~~g~t~al~~~---~~~--------~-d~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 131 (361)
T 3ftb_A 64 RRLNKSIENYLKLKDIGIVLGNGASEIIELS---ISL--------F-EKILIIVPSYAEYEINAKKHGVSVVFSYLDENM 131 (361)
T ss_dssp HHHHHHHHHHHTCCSCEEEEESSHHHHHHHH---HTT--------C-SEEEEEESCCTHHHHHHHHTTCEEEEEECCTTS
T ss_pred HHHHHHHHHHhCCCcceEEEcCCHHHHHHHH---HHH--------c-CcEEEecCChHHHHHHHHHcCCeEEEeecCccc
Confidence 47889999999987644 4456666655333 321 1 789998887777777788899999999998888
Q ss_pred CCCHHHHHHHHHhcCCCEEEEEEEcC-CCcccccc--CHHHHHHHHHHcCCEEEEEccccccccC-----CCCCCccCCc
Q 001989 714 NINIEELRKAAEANRDNLSTLMVTYP-STHGVYEE--GIDEICKIIHDNGGQVYMDGANMNAQVG-----LTSPGYIGAD 785 (985)
Q Consensus 714 ~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~--di~eI~~la~~~galliVD~a~~~~~~~-----l~~pg~~g~D 785 (985)
.+|+++|+++++ + +++|++++| |++|.+.+ ++++|+++|+++|+++++|+++...... ....+..+.+
T Consensus 132 ~~~~~~l~~~l~---~-~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~ 207 (361)
T 3ftb_A 132 CIDYEDIISKID---D-VDSVIIGNPNNPNGGLINKEKFIHVLKLAEEKKKTIIIDEAFIEFTGDPSSSFVGEIKNYSCL 207 (361)
T ss_dssp CCCHHHHHHHTT---T-CSEEEEETTBTTTTBCCCHHHHHHHHHHHHHHTCEEEEECSSGGGTCCTTSSSGGGTTTCSSE
T ss_pred CCCHHHHHHhcc---C-CCEEEEeCCCCCCCCCCCHHHHHHHHHHhhhcCCEEEEECcchhhcCCcccchhHhcccCCCE
Confidence 899999999997 5 889999999 56998862 4788888889999999999998421110 1111223345
Q ss_pred EEEeCCcccccccCCCCCCceEEEE-EcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhc
Q 001989 786 VCHLNLHKTFCIPHGGGGPGMGPIG-VKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMG 864 (985)
Q Consensus 786 i~~~s~hK~l~~p~g~GGPg~G~i~-~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg 864 (985)
+++.|++|+|+. +|.++|+++ .++++.+.+.... .+.+. +.....++.+++. .
T Consensus 208 i~~~s~sK~~~~----~G~r~g~~~~~~~~~~~~~~~~~--------------~~~~~------~~~~~~~~~~~l~--~ 261 (361)
T 3ftb_A 208 FIIRAMTKFFAM----PGIRFGYGITNNKEIAAKIKAKQ--------------NPWNI------NCFAEMAAINCLK--D 261 (361)
T ss_dssp EEEEESSSTTSC----GGGCCEEEEESCHHHHHHHHTTS--------------CTTCS------CHHHHHHHHHTSS--C
T ss_pred EEEeeChhhcCC----CCcceeEEEeCCHHHHHHHHhhC--------------CCCCC------CHHHHHHHHHHhc--C
Confidence 778899999854 356788888 5666655442210 01111 1122222333333 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCee-ecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCC-CCC--
Q 001989 865 SKGLTEASKIAILNANYMAKRLEKHYPIL-FRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTM-SWP-- 940 (985)
Q Consensus 865 ~eGl~~~~~~~~~~a~~l~~~L~~g~~l~-~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~-~~p-- 940 (985)
.+.+.+..++..++++++.+.|++...+. ...+.+.+ +.+.++ +.+..++.+.|.++||.+... .++
T Consensus 262 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~---~~~~~~------~~~~~~l~~~l~~~gi~v~~g~~~~~~ 332 (361)
T 3ftb_A 262 TNYIEESLLWIKKERKRFIEELNKIGFIKRVFSPHANF---VLCRLE------NISGEKLYDSLLKEDIVIRRCCNFIGL 332 (361)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSSSEEEEECCSSSE---EEEEES------SSCHHHHHHHHHTTTEECEECTTSTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCceecCCCCeE---EEEEcC------CCCHHHHHHHHHHCCeEEeeCccCCCC
Confidence 45667777778888999999998632332 22222322 345654 247889999999999987532 222
Q ss_pred CCCEEEEeccCCCCHHHHHHHHccCChhHHHH
Q 001989 941 VPGTLMIEPTESESKSWTGIVMLSSPSEKKLH 972 (985)
Q Consensus 941 ~~~~lris~t~~~t~eeId~~~~~~~l~~~~~ 972 (985)
..+.+|++++ +.+|+|+ +.+.|+++.+
T Consensus 333 ~~~~iRis~~---~~~~~~~--l~~~l~~~~~ 359 (361)
T 3ftb_A 333 DDSFVRFAIK---DEKKNTK--FLRALKGVEN 359 (361)
T ss_dssp CTTEEEEECC---CHHHHHH--HHHHHHHHHH
T ss_pred CCCEEEEEcC---CHHHHHH--HHHHHHHHHh
Confidence 2489999985 8999999 6667766654
|
| >1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=2.6e-18 Score=196.79 Aligned_cols=308 Identities=15% Similarity=0.078 Sum_probs=195.3
Q ss_pred HHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcCCCC-
Q 001989 634 FNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAK- 712 (985)
Q Consensus 634 ~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~d~~- 712 (985)
..++++.+++++|.+. .++.++|++|+..++.+++ ..++++|+++...|..+...++..|++++.+|++++
T Consensus 41 ~~~l~~~la~~~~~~~-~~~~~~gt~al~~~~~~~~-------~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~ 112 (393)
T 1mdo_A 41 NQELEAAFCRLTGNQY-AVAVSSATAGMHIALMALG-------IGEGDEVITPSMTWVSTLNMIVLLGANPVMVDVDRDT 112 (393)
T ss_dssp HHHHHHHHHHHHCCSE-EEEESCHHHHHHHHHHHTT-------CCTTCEEEEESSSCHHHHHHHHHTTCEEEEECBCTTT
T ss_pred HHHHHHHHHHHhCCCc-EEEecChHHHHHHHHHHcC-------CCCCCEEEeCCCccHhHHHHHHHCCCEEEEEeccCCc
Confidence 4578899999999874 3556778877755544431 146789999998887777778889999999999865
Q ss_pred CCCCHHHHHHHHHhcCCCEEEEEEEcCCCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCccC-CcEEEeCC
Q 001989 713 GNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIG-ADVCHLNL 791 (985)
Q Consensus 713 g~iD~e~L~~~i~~~~~~t~~Vvv~~pn~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~g-~Di~~~s~ 791 (985)
+.+|+++|+++++ +++++|++++ ++|.+. |+++|.++|+++|+++++|++|..+.... ...++ .|++++|+
T Consensus 113 ~~~d~~~l~~~l~---~~~~~v~~~~--~~G~~~-~~~~i~~l~~~~~~~li~D~a~~~g~~~~--~~~~~~~d~~~~S~ 184 (393)
T 1mdo_A 113 LMVTPEHIEAAIT---PQTKAIIPVH--YAGAPA-DLDAIYALGERYGIPVIEDAAHATGTSYK--GRHIGARGTAIFSF 184 (393)
T ss_dssp CCBCHHHHHHHCC---TTEEEECCBC--GGGCCC-CHHHHHHHHHHHTCCBCEECTTCTTCEET--TEETTSSSEEEEEC
T ss_pred CCCCHHHHHHhcC---CCceEEEEeC--CCCCcC-CHHHHHHHHHHcCCeEEEECccccCCeEC--CeecCCCCeEEEeC
Confidence 6899999999997 6899998875 579887 89999999999999999999986432211 11245 89999999
Q ss_pred c--ccccccCCCCCCceEEEEEc-ccccCcCCC-CccccCCCC-CC------CCCCCCCCCCCCcchhhhHHHHHHHHHH
Q 001989 792 H--KTFCIPHGGGGPGMGPIGVK-KHLAPFLPS-HPVVSTGGI-PA------PEKSQPLGTIAAAPWGSALILPISYTYI 860 (985)
Q Consensus 792 h--K~l~~p~g~GGPg~G~i~~~-~~l~~~lp~-~~~g~~~~~-~~------~~~~~~~~~i~s~~~g~~~~~~~a~a~l 860 (985)
| |+++ |+.+|+++++ +++.+.+.. ...+...+. .+ +..+..+.+.. +......++.+...+
T Consensus 185 ~k~K~l~------~~~~g~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~--~~~~~~~~a~~~~~l 256 (393)
T 1mdo_A 185 HAIKNIT------CAEGGIVVTDNPQFADKLRSLKFHGLGVDAWDRQSGGRAPQAEVLAPGYK--YNLPDLNAAIALAQL 256 (393)
T ss_dssp CTTSSSC------SSSCEEEEESCHHHHHHHHHHTBTTEECC-----------CCEESSCCCB--CCCCHHHHHHHHHHH
T ss_pred CCCCccc------cccceEEEeCCHHHHHHHHHHHhcCCcccchhhhcccccccccccccCcc--CCCCHHHHHHHHHHH
Confidence 9 7662 3467888886 454432210 000110000 00 00000000000 000112222222222
Q ss_pred HHhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCC--CCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCC
Q 001989 861 AMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGV--NGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTM 937 (985)
Q Consensus 861 ~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~--~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~ 937 (985)
+++++..++..++++++.+.|++ ++.+..... .....+.+.+.++. ...+.+..++.+.|.++||.+...
T Consensus 257 -----~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~v~~~~--~~~~~~~~~l~~~l~~~gi~v~~~ 329 (393)
T 1mdo_A 257 -----QKLDALNARRAAIAAQYHQAMADLPFQPLSLPSWEHIHAWHLFIIRVDE--ARCGITRDALMASLKTKGIGTGLH 329 (393)
T ss_dssp -----HTHHHHHHHHHHHHHHHHHHHHTSSCEECCCCSSCEECCCSCEEEECCH--HHHSSCHHHHHHHHHHTTBCCBCC
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHhcCCcccccCCCCCCCceeEEEEEEecc--cccccCHHHHHHHHHhCCCCcccc
Confidence 34566666777889999999987 333211110 00111124455430 000356889999999999987643
Q ss_pred CCC---------------C-------CCEEEEeccCCCCHHHHHHHHccCChhHHHHhh
Q 001989 938 SWP---------------V-------PGTLMIEPTESESKSWTGIVMLSSPSEKKLHRL 974 (985)
Q Consensus 938 ~~p---------------~-------~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~ 974 (985)
..| . ...+|++++..+|++||++ ++++|+++++..
T Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lRi~~~~~~t~~~i~~--~~~~l~~~~~~~ 386 (393)
T 1mdo_A 330 FRAAHTQKYYRERFPTLTLPDTEWNSERICSLPLFPDMTESDFDR--VITALHQIAGQG 386 (393)
T ss_dssp CCCGGGSHHHHHHSTTCCCHHHHHHHTTEEEECCCTTCCHHHHHH--HHHHHHHHHC--
T ss_pred cCccccChhhhccCCccCChhHHHHHhCEEEecCCCCCCHHHHHH--HHHHHHHHHhcC
Confidence 211 1 2479999999999999999 778888877654
|
| >1b9h_A AHBA synthase, protein (3-amino-5-hydroxybenzoic acid synthase); rifamycin biosynthesis (RIFD gene); HET: PLP; 2.00A {Amycolatopsis mediterranei} SCOP: c.67.1.4 PDB: 1b9i_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=3.1e-18 Score=196.03 Aligned_cols=305 Identities=14% Similarity=0.078 Sum_probs=191.0
Q ss_pred HHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcCCCC-
Q 001989 634 FNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAK- 712 (985)
Q Consensus 634 ~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~d~~- 712 (985)
..++++.+++++|.+. .+++++|++|+..++.+++ ..++++||++...|..+...++..|++++.++++++
T Consensus 40 ~~~l~~~la~~~~~~~-~i~~~sGt~al~~~l~~l~-------~~~gd~Vi~~~~~~~~~~~~~~~~g~~~~~v~~~~~~ 111 (388)
T 1b9h_A 40 VNSFEREFAAHHGAAH-ALAVTNGTHALELALQVMG-------VGPGTEVIVPAFTFISSSQAAQRLGAVTVPVDVDAAT 111 (388)
T ss_dssp HHHHHHHHHHHTTCSE-EEEESCHHHHHHHHHHHTT-------CCTTCEEEEESSSCTHHHHHHHHTTCEEEEECBCTTT
T ss_pred HHHHHHHHHHHhCCCe-EEEeCCHHHHHHHHHHHcC-------CCCcCEEEECCCccHHHHHHHHHcCCEEEEEecCCCc
Confidence 4578899999999874 4666778776654444331 146789999998888887778889999999999864
Q ss_pred CCCCHHHHHHHHHhcCCCEEEEEEEcCCCccccccCHHHHHHHHHHcCCEEEEEccccccccCC-CCCCccC-CcEEEeC
Q 001989 713 GNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGL-TSPGYIG-ADVCHLN 790 (985)
Q Consensus 713 g~iD~e~L~~~i~~~~~~t~~Vvv~~pn~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l-~~pg~~g-~Di~~~s 790 (985)
+.+|+++|+++++ +++++|+.. |.+|.+. |+++|.++|+++|+++|+|++|..+...- ...+.++ +++.++|
T Consensus 112 ~~~d~~~l~~~i~---~~~~~v~~~--n~tG~~~-~l~~i~~la~~~~~~li~D~a~~~g~~~~~~~~~~~~~i~~~S~s 185 (388)
T 1b9h_A 112 YNLDPEAVAAAVT---PRTKVIMPV--HMAGLMA-DMDALAKISADTGVPLLQDAAHAHGARWQGKRVGELDSIATFSFQ 185 (388)
T ss_dssp CCBCHHHHHHHCC---TTEEEECCB--CGGGCCC-CHHHHHHHHHHHTCCBCEECTTCTTCEETTEEGGGSSSCEEEECC
T ss_pred CCCCHHHHHHhcC---cCceEEEEe--CCccCcC-CHHHHHHHHHHcCCEEEEecchhcCCccCCeecccccceEEEEcc
Confidence 8899999999997 788888732 4589998 89999999999999999999986433210 1223444 4555555
Q ss_pred CcccccccCCCCCCceEEEEEccc-c--cCcCCC-CccccCCCCCCCC-CCCCCCCCCCcchhhhHHHHHHHHHHHHhcH
Q 001989 791 LHKTFCIPHGGGGPGMGPIGVKKH-L--APFLPS-HPVVSTGGIPAPE-KSQPLGTIAAAPWGSALILPISYTYIAMMGS 865 (985)
Q Consensus 791 ~hK~l~~p~g~GGPg~G~i~~~~~-l--~~~lp~-~~~g~~~~~~~~~-~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~ 865 (985)
.||++ +|+.+|+++++++ + .+.+.. ...+.......+. ...++ +... +...+ ++.+.. .
T Consensus 186 ~~K~l------~g~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~----~~~~~---a~~~~~--~ 249 (388)
T 1b9h_A 186 NGKLM------TAGEGGAVVFPDGETEKYETAFLRHSCGRPRDDRRYFHKIAGS-NMRL----NEFSA---SVLRAQ--L 249 (388)
T ss_dssp TTSSS------CSSSCEEEEECTTCHHHHHHHHHHTBTTCCTTCSSCCCCSCCC-BCBC----BHHHH---HHHHHH--H
T ss_pred CCCcc------cCCCeEEEEECCHHHHHHHHHHHHHhCCCCccCccceeecccc-cCCc----CHHHH---HHHHHH--H
Confidence 66776 3456788888865 4 332210 0011100000000 00011 1000 11111 112222 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCeeecCC-C---CceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCCCCC
Q 001989 866 KGLTEASKIAILNANYMAKRLEKHYPILFRGV-N---GTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPV 941 (985)
Q Consensus 866 eGl~~~~~~~~~~a~~l~~~L~~g~~l~~~~~-~---~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~~p~ 941 (985)
+.+.+..++..++++++.+.|++..++...++ . ....+.+.+.++.. .+.+..++.+.|.++||.+.....|.
T Consensus 250 ~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~~L~~~gI~v~~~~~~~ 326 (388)
T 1b9h_A 250 ARLDEQIAVRDERWTLLSRLLGAIDGVVPQGGDVRADRNSHYMAMFRIPGL---TEERRNALVDRLVEAGLPAFAAFRAI 326 (388)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHTSTTCEECCCCTTCCBCCCSEEEEECTTC---CHHHHHHHHHHHHHTTCCEEECCCCG
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCccccCCCcCCCccceEEEEEEeCCc---CcccHHHHHHHHHHCCCCcccccCcc
Confidence 33455566677788999999986222322111 0 01122345665410 00146789999999999875432221
Q ss_pred ------------------------------CCEEEEeccCCC-CHHHHHHHHccCChhHHHHh
Q 001989 942 ------------------------------PGTLMIEPTESE-SKSWTGIVMLSSPSEKKLHR 973 (985)
Q Consensus 942 ------------------------------~~~lris~t~~~-t~eeId~~~~~~~l~~~~~~ 973 (985)
.+.||++++..+ |+||||+ +++.|++++++
T Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~t~edi~~--~~~~l~~~~~~ 387 (388)
T 1b9h_A 327 YRTDAFWELGAPDESVDAIARRCPNTDAISSDCVWLHHRVLLAGEPELHA--TAEIIADAVAR 387 (388)
T ss_dssp GGSHHHHHSSCCSSCHHHHHHTCHHHHHHHHHEEEEEGGGGGSCHHHHHH--HHHHHHHHHHH
T ss_pred ccChHhHhcCCCcccccccccCCHHHHHHHhCeEEecCCCCCCCHHHHHH--HHHHHHHHHhh
Confidence 136999999999 9999999 78888887754
|
| >3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural genomics, joint center for structural genomics; HET: LLP MSE; 2.01A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=99.78 E-value=4.5e-17 Score=184.62 Aligned_cols=298 Identities=14% Similarity=0.122 Sum_probs=207.2
Q ss_pred CCCCCCCCCcHHHHHHHHhCCccccccCCChhhHhhhHHHHHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhh
Q 001989 172 GMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQ 251 (985)
Q Consensus 172 G~g~y~~~~p~~v~~~i~~~~~~~t~~~pyq~e~sqg~l~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~ 251 (985)
+.|..+...|+.+.+++...-.-+..|.+. ++ .++++.+|+++|.++.++.+++|+|.++++++.++ .
T Consensus 36 ~~~~~~~~~~~~v~~a~~~~~~~~~~y~~~-----~~-----~~lr~~la~~~~~~~~~v~~~~g~~~a~~~~~~~l-~- 103 (365)
T 3get_A 36 ASNENPFGTPPKAIECLRQNANKAHLYPDD-----SM-----IELKSTLAQKYKVQNENIIIGAGSDQVIEFAIHSK-L- 103 (365)
T ss_dssp SSCCCTTCSCHHHHHHHHHHGGGTTSCCCT-----TC-----HHHHHHHHHHHTCCGGGEEEESSHHHHHHHHHHHH-C-
T ss_pred cCCCCCCCCCHHHHHHHHHHHHhhccCCCC-----Ch-----HHHHHHHHHHhCCCcceEEECCCHHHHHHHHHHHH-h-
Confidence 445445556777665555432223333221 11 26789999999998889999999998888777654 2
Q ss_pred cCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc--------hhhhc-cCCCEeEEEEEcC-CCCeeeccHHHHHHH
Q 001989 252 KGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL--------KDIDY-KSGDVCGVLVQYP-GTEGEVLDYGDFIKN 321 (985)
Q Consensus 252 ~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~--------~~l~~-l~~~t~~V~v~~p-n~~G~v~di~~I~~~ 321 (985)
++||+|+++...|+++...++. .|.+++.++. +++++ +++++++|++++| |.+|.+.|++++.++
T Consensus 104 -~~gd~vl~~~~~~~~~~~~~~~----~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~p~nptG~~~~~~~l~~l 178 (365)
T 3get_A 104 -NSKNAFLQAGVTFAMYEIYAKQ----CGAKCYKTQSITHNLDEFKKLYETHKDEIKLIFLCLPNNPLGECLDASEATEF 178 (365)
T ss_dssp -CTTCEEEECSSCCTHHHHHHHH----HTCEEEECSSSSCCHHHHHHHHHHTTTTEEEEEEESSCTTTCCCCCHHHHHHH
T ss_pred -CCCCEEEEeCCChHHHHHHHHH----cCCEEEEEecCCCCCCCHHHHHHHhCCCCCEEEEcCCCCCCCCCcCHHHHHHH
Confidence 3889999999999998888754 4888888875 45666 7889999999988 679999999999998
Q ss_pred HH--hCCcEEEEEecCccccC---C----CCC----CcccceEEEecC-ccccccCCCCCCcEEEEEEchhhHhcCCCce
Q 001989 322 AH--ANGVKVVMATDLLALTI---L----KPP----GELGADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRI 387 (985)
Q Consensus 322 a~--~~galliV~a~~~~lg~---l----~~~----~~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~ 387 (985)
++ ++|+++++|. .++... . .++ ...+.+++++|. |.|+. .|..+|++++++++.+.+...
T Consensus 179 ~~~~~~~~~li~De-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~----~G~r~G~~~~~~~~~~~~~~~- 252 (365)
T 3get_A 179 IKGVNEDCLVVIDA-AYNEFASFKDSKKHLEPCELIKEFDNVLYLGTFSKLYGL----GGLRIGYGIANANIISAFYKL- 252 (365)
T ss_dssp HHTSCTTSEEEEEC-TTHHHHHHHCGGGCCCHHHHHHHCTTEEEEEESSSTTSC----TTTCCEEEEECHHHHHHHHHH-
T ss_pred HHhCCCCcEEEEeC-ccHHHhcccCCcccccHhHHhccCCCEEEEeecchHhcC----cchheEEEEcCHHHHHHHHHh-
Confidence 88 6699999953 333111 1 111 234678999987 87753 344579999988877655100
Q ss_pred eeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCe
Q 001989 388 VGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTV 467 (985)
Q Consensus 388 vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~ 467 (985)
+...+.| .....++.++ +-..+.++++.++..++.+++.+.|+++| +
T Consensus 253 -------------------------~~~~~~~---~~~~~~~~~~----l~~~~~~~~~~~~~~~~~~~l~~~l~~~g-~ 299 (365)
T 3get_A 253 -------------------------RAPFNVS---NLALKAAVAA----MDDDEFTEKTLENNFSQMELYKEFAKKHN-I 299 (365)
T ss_dssp -------------------------SCTTCSC---HHHHHHHHHH----HTCHHHHHHHHHHHHHHHHHHHHHHHHTT-C
T ss_pred -------------------------cCCCCcC---HHHHHHHHHH----hCCHHHHHHHHHHHHHHHHHHHHHHHhCC-C
Confidence 0000111 1112222222 22346788899999999999999999996 8
Q ss_pred EEcCCCCcceEEEecCC--HHHHHHHHHHcCceeeeec---CCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 468 EVQGLPFFDTVKVKCAD--AHAIASAAYKIEMNLRVVD---SNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 468 ~~~~~~~~~~~~~~~~~--~~~v~~~L~~~GI~~~~~~---~~~lris~t~~~t~edId~li~aL~~ 529 (985)
++.... ..-+.+.+++ ..++.+.|.++||.+.... ++.+|++++ |++|+|+++++|.+
T Consensus 300 ~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~iRis~~---~~~~i~~l~~~l~~ 362 (365)
T 3get_A 300 KIIDSY-TNFITYFFDEKNSTDLSEKLLKKGIIIRNLKSYGLNAIRITIG---TSYENEKFFTEFDK 362 (365)
T ss_dssp EECCCS-SSEEEEECSSSCHHHHHHHHHTTTEECEECGGGTCSEEEEECC---CHHHHHHHHHHHHH
T ss_pred EECCCC-CeEEEEECCCCCHHHHHHHHHHCCEEEEECccCCCCEEEEEcC---CHHHHHHHHHHHHH
Confidence 876321 2224566653 8899999999999886543 588999987 89999999999863
|
| >2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=1.2e-18 Score=200.26 Aligned_cols=296 Identities=11% Similarity=0.072 Sum_probs=191.6
Q ss_pred HHHHHHHHHHhCCCccce-ecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcCCCCC
Q 001989 635 NNLGEWLCTITGFDSFSL-QPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKG 713 (985)
Q Consensus 635 ~e~~~~la~l~G~~~~~~-~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~d~~g 713 (985)
.++++.+++++|.+...+ +.++|++++..++.++. .++++|+++.+.|..+...++..|++++.+|.++++
T Consensus 77 ~~l~~~la~~~g~~~~~v~~~~g~~~al~~~~~~~~--------~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~ 148 (397)
T 2zyj_A 77 APLRAFVAEWIGVRPEEVLITTGSQQALDLVGKVFL--------DEGSPVLLEAPSYMGAIQAFRLQGPRFLTVPAGEEG 148 (397)
T ss_dssp HHHHHHHHHHHTSCGGGEEEESHHHHHHHHHHHHHC--------CTTCEEEEEESCCHHHHHHHHTTCCEEEEEEEETTE
T ss_pred HHHHHHHHHHhCCChhhEEEeccHHHHHHHHHHHhC--------CCCCEEEEeCCCcHHHHHHHHHcCCEEEecCcCCCC
Confidence 367788888888765544 44555556544443321 367899998877766666677889999999987665
Q ss_pred CCCHHHHHHHHHhcCCCEEEEE-EEcC-CCcccccc--CHHHHHHHHHHcCCEEEEEccccccc-cCC--CCCCccCC--
Q 001989 714 NINIEELRKAAEANRDNLSTLM-VTYP-STHGVYEE--GIDEICKIIHDNGGQVYMDGANMNAQ-VGL--TSPGYIGA-- 784 (985)
Q Consensus 714 ~iD~e~L~~~i~~~~~~t~~Vv-v~~p-n~~G~i~~--di~eI~~la~~~galliVD~a~~~~~-~~l--~~pg~~g~-- 784 (985)
+|+++|++++++ .++++|+ +++| |++|.+.+ ++++|+++|+++|+++++|+++.... .+- .....++.
T Consensus 149 -~d~~~l~~~l~~--~~~~~v~~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~ 225 (397)
T 2zyj_A 149 -PDLDALEEVLKR--ERPRFLYLIPSFQNPTGGLTPLPARKRLLQMVMERGLVVVEDDAYRELYFGEARLPSLFELAREA 225 (397)
T ss_dssp -ECHHHHHHHHHH--CCCSCEEECCBSCTTTCCBCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCSSCCCCCHHHHHHHH
T ss_pred -CCHHHHHHHHhh--cCCeEEEECCCCcCCCCCcCCHHHHHHHHHHHHHcCCEEEEeCCcccccCCCCCCCchhhhCccc
Confidence 899999999983 2677774 5777 56898861 35599999999999999999985321 111 11112222
Q ss_pred ----cEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHH
Q 001989 785 ----DVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYI 860 (985)
Q Consensus 785 ----Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l 860 (985)
.+++.|+||+|+ | |.++|++++++++.+.+....... ..+++ .....++.++|
T Consensus 226 ~~~~~i~~~s~sK~~~-~----G~r~G~~~~~~~~~~~l~~~~~~~--------------~~~~~----~~~~~a~~~~l 282 (397)
T 2zyj_A 226 GYPGVIYLGSFSKVLS-P----GLRVAFAVAHPEALQKLVQAKQGA--------------DLHTP----MLNQMLVHELL 282 (397)
T ss_dssp TCCCEEEEEESTTTTC-G----GGCCEEEECCHHHHHHHHHHHHHH--------------HSSCC----HHHHHHHHHHH
T ss_pred CCCeEEEEeccccccc-c----cceeEEEecCHHHHHHHHHHHHhh--------------cCCCC----HHHHHHHHHHH
Confidence 378899999985 3 567899999877655442110000 00111 12222223334
Q ss_pred HHhcH-HHHHHHHHHHHHHHHHHHHHhhcc-C-CeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCC
Q 001989 861 AMMGS-KGLTEASKIAILNANYMAKRLEKH-Y-PILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTM 937 (985)
Q Consensus 861 ~~lg~-eGl~~~~~~~~~~a~~l~~~L~~g-~-~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~ 937 (985)
.. +. +.+++..++..++++++.+.|++. . .+....+.+..+ +.++++ .+.+..++.++|.++||.+...
T Consensus 283 ~~-~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~g~~~~~~~~g~~--~~~~~~-----~~~~~~~~~~~l~~~gi~v~~g 354 (397)
T 2zyj_A 283 KE-GFSERLERVRRVYREKAQAMLHALDREVPKEVRYTRPKGGMF--VWMELP-----KGLSAEGLFRRALEENVAFVPG 354 (397)
T ss_dssp TT-THHHHHHHHHHHHHHHHHHHHHHHHHHSCTTSEECCCSBSSE--EEEECS-----TTCCHHHHHHHHHHTTEEEEES
T ss_pred Hh-CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCeEEccCCccEE--EEEEcC-----CCCCHHHHHHHHHHCCCEEech
Confidence 32 21 345666667778888999988762 2 232222222222 345654 2457889999999999987532
Q ss_pred -CCC----CCCEEEEeccCCCCHHHHHHHHccCChhHHHHhhc
Q 001989 938 -SWP----VPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRLK 975 (985)
Q Consensus 938 -~~p----~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~~ 975 (985)
.+. ..+++||+++.. +++||++ +++.|+++++++.
T Consensus 355 ~~f~~~~~~~~~iRis~~~~-~~~~i~~--~~~~l~~~l~~~~ 394 (397)
T 2zyj_A 355 GPFFANGGGENTLRLSYATL-DREGIAE--GVRRLGRALKGLL 394 (397)
T ss_dssp GGGCTTSCCTTEEEEECSSS-CHHHHHH--HHHHHHHHHHHHH
T ss_pred HHhcCCCCCCCeEEEEcCCC-CHHHHHH--HHHHHHHHHHHHH
Confidence 221 247999999875 8999999 7888888887653
|
| >3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism, transferase; HET: PLP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.8e-17 Score=189.80 Aligned_cols=277 Identities=13% Similarity=0.122 Sum_probs=194.2
Q ss_pred hhHHHHHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEe
Q 001989 207 QGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVS 286 (985)
Q Consensus 207 qg~l~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v 286 (985)
.|..+...++++.+|+++|.+. ..++.+||.++++++.++ .++||+|+++...|+++...++ ..|.+++.+
T Consensus 84 ~g~~~~~~~l~~~la~~~~~~~--~i~~~sGt~a~~~~l~~~---~~~gd~v~~~~~~~~~~~~~~~----~~g~~~~~~ 154 (399)
T 3tqx_A 84 CGTQTIHKELEKDISEFLGTDD--TILYSSCFDANGGLFETL---LGPEDAIISDELNHASIIDGIR----LCKAQRYRY 154 (399)
T ss_dssp CCCBHHHHHHHHHHHHHHTCSE--EEEESCHHHHHHTTHHHH---CCTTCEEEEETTCCHHHHHHHH----SCCSEEEEE
T ss_pred ccCchHHHHHHHHHHHHHCCCc--EEEECchHHHHHHHHHHh---cCCCCEEEECCcccHHHHHHHH----HcCCceeEe
Confidence 4445667788999999999873 556667776666555443 2488999999999999988764 468888887
Q ss_pred Cc---hhhhc-cCC------CEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCCCCC---------c
Q 001989 287 DL---KDIDY-KSG------DVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKPPG---------E 346 (985)
Q Consensus 287 ~~---~~l~~-l~~------~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~~~~---------~ 346 (985)
+. +++++ +.+ ++++|++.+| |++|.+.|+++|.++|+++|+++++| +..+.+.....+ .
T Consensus 155 ~~~d~~~l~~~l~~~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D-e~~~~~~~~~~~~~~~~~~~~~ 233 (399)
T 3tqx_A 155 KNNAMGDLEAKLKEADEKGARFKLIATDGVFSMDGIIADLKSICDLADKYNALVMVD-DSHAVGFIGENGRGTPEYCGVA 233 (399)
T ss_dssp CTTCTTHHHHHHHHHHTTTCSSEEEEEESEETTTTEECCHHHHHHHHHHTTCEEEEE-CTTTTTTSSTTSCCHHHHHTCT
T ss_pred CCCCHHHHHHHHHhhhccCCCceEEEEeCCCCCCCCcCCHHHHHHHHHHcCCEEEEE-CCccccccCCCCCchHHhhCCC
Confidence 54 55555 432 7999999988 88999999999999999999999995 344455433221 1
Q ss_pred ccceEEEecC-ccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhH
Q 001989 347 LGADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQA 425 (985)
Q Consensus 347 ~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~ 425 (985)
.+.|+++++. |+|++ .|| |++++++++++.+... ...|. ..++.| ...
T Consensus 234 ~~~di~~~s~sK~~~g-----~~g-G~~~~~~~~~~~~~~~----------~~~~~------------~~~~~~---~~~ 282 (399)
T 3tqx_A 234 DRVDILTGTLGKALGG-----ASG-GYTSGHKEIIEWLRNR----------SRPYL------------FSNTVA---PVI 282 (399)
T ss_dssp TCCSEEEEESSSSSCS-----SCC-EEEEECHHHHHHHHHH----------CHHHH------------SSCCCC---HHH
T ss_pred CCCcEEEecchHhccc-----Cce-EEEEcCHHHHHHHHHh----------Cccee------------ccCCCc---HHH
Confidence 2679999998 87752 234 8999998887665210 00000 011111 122
Q ss_pred HHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCCCcceEEEecCC---HHHHHHHHHHcCceeeee
Q 001989 426 LLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDTVKVKCAD---AHAIASAAYKIEMNLRVV 502 (985)
Q Consensus 426 l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~---~~~v~~~L~~~GI~~~~~ 502 (985)
..+..+++ ..+. ++++++.++..++.+++.+.|+++| +++.. +...-+.+..+. ..++.++|.++||.+...
T Consensus 283 ~~~~~~~l--~~~~-~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~ 357 (399)
T 3tqx_A 283 VATSLKVL--ELLK-TEGPQLRKQLQENSRYFRAGMEKLG-FQLVP-GNHPIIPVMLGDAQLATNMADHLLQEGIYVVGF 357 (399)
T ss_dssp HHHHHHHH--HHHH-HTHHHHHHHHHHHHHHHHHHHHHHT-CCBCC-CSSSEEEEEEECHHHHHHHHHHHHHTTEECCEE
T ss_pred HHHHHHHH--HHHh-hccHHHHHHHHHHHHHHHHHHHHcC-CCcCC-CCCCEEEEEeCCHHHHHHHHHHHHHCCCEEeee
Confidence 22333332 3322 5678999999999999999999987 77663 222234444443 788999999999987642
Q ss_pred c-------CCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 503 D-------SNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 503 ~-------~~~lris~t~~~t~edId~li~aL~~ 529 (985)
. .+.+|++++..+|++|+++++++|.+
T Consensus 358 ~~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~ 391 (399)
T 3tqx_A 358 SYPVVPMGKARIRVQMSAVHTQQQLDRAIEAFGQ 391 (399)
T ss_dssp CTTTSCTTCEEEEEECCTTCCHHHHHHHHHHHHH
T ss_pred CCCCCCCCCceEEEEeecCCCHHHHHHHHHHHHH
Confidence 1 25899999999999999999999974
|
| >1pff_A Methionine gamma-lyase; homocysteine; 2.50A {Trichomonas vaginalis} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.78 E-value=6.5e-18 Score=188.96 Aligned_cols=273 Identities=17% Similarity=0.128 Sum_probs=182.6
Q ss_pred HHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc---hhh
Q 001989 215 NFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL---KDI 291 (985)
Q Consensus 215 e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~---~~l 291 (985)
++++.+|+++|.+ ...++.+||.+++.++.++ . ++||+|+++...|+++...++.+++..|++++.++. +++
T Consensus 2 ~l~~~la~~~g~~--~~i~~~sG~~a~~~~~~~~-~--~~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l 76 (331)
T 1pff_A 2 ALEGKIAKLEHAE--ACAATASGMGAIAASVWTF-L--KAGDHLISDDCLYGCTHALFEHQLRKFGVEVDFIDMAVPGNI 76 (331)
T ss_dssp HHHHHHHHHHTCS--EEEEESSHHHHHHHHHHHH-C--CTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECTTSTTHH
T ss_pred hHHHHHHHHhCCC--eEEEeCChHHHHHHHHHHh-c--CCCCEEEEcCCCcchHHHHHHHHHHhcCCEEEEeCCCCHHHH
Confidence 5778999999987 3556667787776666544 2 378999999999999988886544557899988865 556
Q ss_pred hc-cCCCEeEEEEEcC-CCCeeeccHHHHHHHHHh-CCcEEEEEecCccccCCCCCCcccceEEEecC-ccccccCCCCC
Q 001989 292 DY-KSGDVCGVLVQYP-GTEGEVLDYGDFIKNAHA-NGVKVVMATDLLALTILKPPGELGADIVVGSA-QRFGVPMGYGG 367 (985)
Q Consensus 292 ~~-l~~~t~~V~v~~p-n~~G~v~di~~I~~~a~~-~galliV~a~~~~lg~l~~~~~~GaDi~v~s~-k~lg~P~~~GG 367 (985)
++ +++++++|++++| |++|.+.|+++|.++|++ +|+++++| +.++.+....+.++|+|++++|. |.|++| |+
T Consensus 77 ~~~i~~~~~~v~~~~~~nptG~~~~~~~i~~~~~~~~~~~li~D-~a~~~~~~~~~~~~~~d~~~~s~~K~~~~~---~~ 152 (331)
T 1pff_A 77 EKHLKPNTRIVYFETPANPTLKVIDIEDAVKQARKQKDILVIVD-NTFASPILTNPLDLGVDIVVHSATKYINGH---TD 152 (331)
T ss_dssp HHTCCTTEEEEEEESSCTTTCCCCCHHHHHHHHTTSSSCEEEEE-CTTTHHHHCCGGGGTCSEEEEETTTTTSSS---SS
T ss_pred HHhhcCCCeEEEEECCCCCcCcccCHHHHHHHHhhhcCCEEEEE-CCCcccccCChhhcCCcEEEEECccccCCC---CC
Confidence 66 7889999999998 789999999999999999 99999995 34555544344578999999998 777654 33
Q ss_pred CcEEEEEEch-hhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcchHHHH
Q 001989 368 PHAAFLATSQ-EYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTI 446 (985)
Q Consensus 368 P~~G~l~~~~-~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i 446 (985)
+.+|++++++ ++.+++.....+ + . .++.|. ...++..+++ . .+...
T Consensus 153 r~~G~~~~~~~~~~~~l~~~~~~----------~-~------------~~~~~~---~~~~~~~~~l--~-----~~~~~ 199 (331)
T 1pff_A 153 VVAGLVCSRADIIAKVKSQGIKD----------I-T------------GAIISP---HDAWLITRGT--L-----TLDMR 199 (331)
T ss_dssp CCCEEEEECHHHHHHHHHTCCCC----------C-C------------CCCCCH---HHHHHHHHHH--H-----HHHHH
T ss_pred ceEEEEEeCcHHHHHHHHHHHHh----------h-c------------CCCCCH---HHHHHHHcCc--c-----hHHHH
Confidence 3368999998 777665221100 0 0 001111 1111111111 1 12333
Q ss_pred HHHHHHHHHHHHHHHhcCC--------------CeEEcCC---CCcceEEEecCCHHHHHHHHHHcCceeeee-------
Q 001989 447 AQRVHGLAGTFALGLKKLG--------------TVEVQGL---PFFDTVKVKCADAHAIASAAYKIEMNLRVV------- 502 (985)
Q Consensus 447 ~~~~~~~a~~l~~~L~~~g--------------~~~~~~~---~~~~~~~~~~~~~~~v~~~L~~~GI~~~~~------- 502 (985)
.++..++..++.+.|++.. ++++... .....+.|..++..++.+.|.++||.++..
T Consensus 200 ~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gI~~~~~s~g~~~s 279 (331)
T 1pff_A 200 VKRAAENAQKVAEFLHEHKAVKKVYYPGLPDHPGHEIAKKQMKMFGSMIAFDVDGLEKAKKVLDNCHVVSLAVSLGGPES 279 (331)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCCCEECTTSTTSTTHHHHHHHCSSCCSEEEEECSSHHHHHHHHHTCSSSEECSSCCSSSC
T ss_pred HHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEECCHHHHHHHHHhCCCceeccCCCCcce
Confidence 3444445555555554321 1222110 022346666656778888999999965321
Q ss_pred -----------------------cCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 503 -----------------------DSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 503 -----------------------~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
.++.+|+|++..+|++|||+++++|..
T Consensus 280 l~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~~~~~t~~~i~~l~~~l~~ 329 (331)
T 1pff_A 280 LIQHPASMTHAGVPKEEREAAGLTDNLIRLSVGCENVQDIIDDLKQALDL 329 (331)
T ss_dssp EEECHHHHTSTTSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHT
T ss_pred eeecchhhcccccCHHHHHhcCCCCCeEEEEEecCCHHHHHHHHHHHHHH
Confidence 147899999999999999999999974
|
| >3a9z_A Selenocysteine lyase; PLP, cytoplasm, pyridoxal phosphate, transferase; HET: PLP SLP; 1.55A {Rattus norvegicus} PDB: 3a9x_A* 3a9y_A* 3gzd_A* 3gzc_A* 2hdy_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=2.8e-17 Score=190.78 Aligned_cols=294 Identities=15% Similarity=0.112 Sum_probs=200.7
Q ss_pred HhhhHHHHHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhh--hhc---CCC-------------CEEEEcCCCCh
Q 001989 205 IAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNN--IQK---GKK-------------KTFIIASNCHP 266 (985)
Q Consensus 205 ~sqg~l~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~--~~~---~~g-------------~~Vlv~~~~H~ 266 (985)
.+++..+.+.++++.+|+++|.++.++.+++|+|.+++.++.++. +.. ++| ++|+++..+|+
T Consensus 55 ~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a~~~~~~~~~~~~~~~~~~~gd~vl~~~p~y~~~~~i~~~~~~h~ 134 (432)
T 3a9z_A 55 AGRKAKDIINTARASLAKMIGGKPQDIIFTSGGTESNNLVIHSTVRCFHEQQTLQGRTVDQISPEEGTRPHFITCTVEHD 134 (432)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCGGGEEEESCHHHHHHHHHHHHHHHHHHHHHHC------------CCCEEEEETTCCH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCcCeEEEeCChHHHHHHHHHHHHhhhhhccccCCccccccccccccCCeEEEecCcch
Confidence 345667888899999999999988889999999988887776542 100 144 58999999999
Q ss_pred hHHHHHHHhhcCCCeEEEEeCc---------hhhhc-cCCCEeEEEEEcC-CCCeeeccHHHHHHHHHhCC---------
Q 001989 267 QTIDICITRADGFDIKVVVSDL---------KDIDY-KSGDVCGVLVQYP-GTEGEVLDYGDFIKNAHANG--------- 326 (985)
Q Consensus 267 s~~~~~~~~a~~~gi~v~~v~~---------~~l~~-l~~~t~~V~v~~p-n~~G~v~di~~I~~~a~~~g--------- 326 (985)
++..++..+++..|++++.++. ++|++ +++++++|++++| |.+|.+.|+++|.++|+++|
T Consensus 135 s~~~~~~~~~~~~g~~v~~v~~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~~~~~~~ 214 (432)
T 3a9z_A 135 SIRLPLEHLVEDQVAEVTFVPVSKVNGQVEVEDILAAVRPTTCLVTIMLANNETGVIMPISEISRRIKALNQIRAASGLP 214 (432)
T ss_dssp HHHHHHHHHHHTTSCEEEEECCCTTTSSCCHHHHHHTCCTTEEEEECCSBCTTTCBBCCHHHHHHHHHHHHHHHHHHTCC
T ss_pred hHHHHHHHHHHhcCcEEEEEecCcccCCcCHHHHHHhccCCceEEEEECcccCcccccCHHHHHHHHHhcCcccccccCC
Confidence 9999998777667899988865 24555 7788999999988 78999999999999999999
Q ss_pred -cEEEEEecCccccCCC-CCCcccceEEEecCccccccCCCCCCcEEEEEEchhh-HhcCCCceeeeeecCCCCcceeee
Q 001989 327 -VKVVMATDLLALTILK-PPGELGADIVVGSAQRFGVPMGYGGPHAAFLATSQEY-KRMMPGRIVGVSIDSSGKPALRVA 403 (985)
Q Consensus 327 -alliV~a~~~~lg~l~-~~~~~GaDi~v~s~k~lg~P~~~GGP~~G~l~~~~~~-~~~lp~~~vG~t~d~~g~~~~~l~ 403 (985)
+++++| +..+.+... ...++++|+++.|.+|+. ||.+|+++++++. ...+.+.+.|+ .
T Consensus 215 ~~~livD-ea~~~~~~~~~~~~~~~d~~~~s~~K~~------g~~~G~~~~~~~~~~~~~~~~~~~~------~------ 275 (432)
T 3a9z_A 215 RVLVHTD-AAQALGKRRVDVEDLGVDFLTIVGHKFY------GPRIGALYVRGVGKLTPLYPMLFGG------G------ 275 (432)
T ss_dssp CCEEEEE-CTTTTTTSCCCHHHHCCSEEEEEGGGTT------CCSCEEEEETTBTTTBCCCCSCCSS------C------
T ss_pred ceEEEEE-chhhhCCcccChhhcCCCEEEEehhHhc------CCcceEEEEccccccCCcCceeecC------C------
Confidence 999995 344555332 113478999999883332 2458999998765 33332222221 0
Q ss_pred cccccccccccccCCCccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcC-CCeEE--cCC----CCc-
Q 001989 404 MQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKL-GTVEV--QGL----PFF- 475 (985)
Q Consensus 404 l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~-g~~~~--~~~----~~~- 475 (985)
+..+++.+|.|. ....++.+++ .++ .++++++.++..++++++.+.|+++ | +++ ..+ ...
T Consensus 276 -----~~~~~~~~~~~~---~~~~a~~aal--~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~g-~~~~~~~~~~~~~~~~ 343 (432)
T 3a9z_A 276 -----QERNFRPGTENT---PMIAGLGKAA--DLV-SENCETYEAHMRDIRDYLEERLEAEFG-KRIHLNSRFPGVERLP 343 (432)
T ss_dssp -----GGGGTSCSCCCH---HHHHHHHHHH--HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHG-GGEEESSCCTTCCBCT
T ss_pred -----ccccccCCCcCH---HHHHHHHHHH--HHH-HhhHHHHHHHHHHHHHHHHHHHHhccC-CcEEEeCCCCcccCCC
Confidence 111234456554 2344444444 332 3478899999999999999999885 5 433 222 111
Q ss_pred ceEEEecCC----HHHHHHHHH----HcCceeee------------------ecCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 476 DTVKVKCAD----AHAIASAAY----KIEMNLRV------------------VDSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 476 ~~~~~~~~~----~~~v~~~L~----~~GI~~~~------------------~~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
..+.|.+++ ..++.+.|. +.|+.+.. ...+.+|++++.++|++|+++++++|+.
T Consensus 344 ~~~~~~~~~~~~~~~~~~~~l~~i~~~~G~~~~~~~~~~~~~~l~~~g~~~~~~~~~iRis~~~~~t~eei~~~~~~l~~ 423 (432)
T 3a9z_A 344 NTCNFSIQGSQLRGYMVLAQCQTLLASVGASCHSDHEDRPSPVLLSCGIPVDVARNAVRLSVGRSTTRAEVDLIVQDLKQ 423 (432)
T ss_dssp TEEEEEECSTTCCHHHHHHHCSSEECBSSCGGGGGGTTSCCHHHHHTTCCHHHHTTEEEEECCTTCCHHHHHHHHHHHHH
T ss_pred CEEEEEeCCCCCcHHHHHHHhcCeEEeccccccCCCCCCccHHHHhcCCCccccCceEEEEcCCCCCHHHHHHHHHHHHH
Confidence 234444332 555655442 12332211 0137899999999999999999999974
|
| >2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.78 E-value=3.8e-18 Score=210.89 Aligned_cols=305 Identities=14% Similarity=0.093 Sum_probs=201.1
Q ss_pred HHHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcCCCC
Q 001989 633 MFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAK 712 (985)
Q Consensus 633 ~~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~d~~ 712 (985)
.+.++++.+++++|.+...++.+++++++.+++.++. .++|+||++...|.++...+...|++++.++.+.+
T Consensus 206 ~v~~~ee~la~l~G~d~~i~~~~Gtt~a~~~~i~al~--------~~GD~Vlv~~~~h~s~~~~~~~~G~~~v~v~~~~~ 277 (755)
T 2vyc_A 206 AFGESEKYAARVFGADRSWSVVVGTSGSNRTIMQACM--------TDNDVVVVDRNCHKSIEQGLMLTGAKPVYMVPSRN 277 (755)
T ss_dssp HHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHHC--------CTTCEEEEESSCCHHHHHHHHHHCCEEEEECCCBC
T ss_pred HHHHHHHHHHHHhCCCceEEECCcHHHHHHHHHHHhc--------CCCCEEEECCCchHHHHHHHHHcCCEEEEEeCCCC
Confidence 3668899999999998654555555566655554432 47899999999998877778889999999987643
Q ss_pred -----CCC-----CHHHHHHHHHhcCCCE--------EEEEEEcCCCccccccCHHHHHHHHHHcCCEEEEEccccccc-
Q 001989 713 -----GNI-----NIEELRKAAEANRDNL--------STLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQ- 773 (985)
Q Consensus 713 -----g~i-----D~e~L~~~i~~~~~~t--------~~Vvv~~pn~~G~i~~di~eI~~la~~~galliVD~a~~~~~- 773 (985)
|.+ |+++|+++|+++ +++ ++|++++||++|.+. |+++|+++||++|++|+||+||....
T Consensus 278 ~~g~~g~i~~~~~d~e~le~~i~~~-~~~k~~~~~~~klvil~~pn~~G~v~-dl~~I~~ia~~~~~~livDeA~~~~~~ 355 (755)
T 2vyc_A 278 RYGIIGPIYPQEMQPETLQKKISES-PLTKDKAGQKPSYCVVTNCTYDGVCY-NAKEAQDLLEKTSDRLHFDEAWYGYAR 355 (755)
T ss_dssp TTSCBCCCCGGGGSHHHHHHHHHHC-TTTGGGTTCCCSCEEEESSCTTSEEE-CHHHHHHHHTTTCSEEEEECTTCTTGG
T ss_pred ccccccccCcCCCCHHHHHHHHHhC-ccccccccCCCeEEEEECCCCCceec-CHHHHHHHHHHcCCEEEEECcCchhcc
Confidence 346 999999999742 234 389999999999998 89999999999999999999985211
Q ss_pred -cCC---CCCCccC--CcE------EEeCCcccccccCCCCCC-ceEEEEEccc--ccCcCC-CCccccCCCCCCCCCCC
Q 001989 774 -VGL---TSPGYIG--ADV------CHLNLHKTFCIPHGGGGP-GMGPIGVKKH--LAPFLP-SHPVVSTGGIPAPEKSQ 837 (985)
Q Consensus 774 -~~l---~~pg~~g--~Di------~~~s~hK~l~~p~g~GGP-g~G~i~~~~~--l~~~lp-~~~~g~~~~~~~~~~~~ 837 (985)
+.. ..+. .+ +|+ ++.|+||+++ || ++|++++++. ...... ...... ...
T Consensus 356 ~~~~~~~~~~~-~g~~aD~~~~~~iv~~S~hK~L~------g~~~g~~i~~~~~~~~i~~~~~~~~~~~--------~~s 420 (755)
T 2vyc_A 356 FNPIYADHYAM-RGEPGDHNGPTVFATHSTHKLLN------ALSQASYIHVREGRGAINFSRFNQAYMM--------HAT 420 (755)
T ss_dssp GCGGGTTSSSS-CSCCCCCSSBEEEEEEETTTSSS------CCTTCEEEEEECCBTCCCHHHHHHHHHH--------TSC
T ss_pred cCcccCCcchh-cCCcCCccCCCeEEEECcccccc------CcCCeeeeeecCcccccCHHHHHHHHHH--------hCC
Confidence 110 1122 56 786 9999999973 55 5788888765 221000 000000 000
Q ss_pred CCCCCCCcchhhhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc--c---------CCeeecCC---------
Q 001989 838 PLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK--H---------YPILFRGV--------- 897 (985)
Q Consensus 838 ~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~--g---------~~l~~~~~--------- 897 (985)
++++ + ..+++.-+++..+..+|..+..++..+++++++++|++ + +++..+..
T Consensus 421 ~sp~----~----~~iaal~aA~~~l~~~gg~~~~~~~~~~a~~~r~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 492 (755)
T 2vyc_A 421 TSPL----Y----AICASNDVAVSMMDGNSGLSLTQEVIDEAVDFRQAMARLYKEFTADGSWFFKPWNKEVVTDPQTGKT 492 (755)
T ss_dssp SSCC----H----HHHHHHHHHHHHHSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCEESSCSEEECTTTCCE
T ss_pred CCHH----H----HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccccccccccceeeccCchhccccccccc
Confidence 1111 1 11111123344555554466777888999999999976 4 43321100
Q ss_pred ---------------------------------CCc-e--eeEEEEEecCcc-----ccCCCCHHHHHHHHHHCCCccCC
Q 001989 898 ---------------------------------NGT-V--AHEFIVDLRGLK-----NTAGIEPEDVAKRLMDYGFHGPT 936 (985)
Q Consensus 898 ---------------------------------~~~-~--~~~~iv~~~~~~-----~~~g~~~~~v~~~L~~~Gi~~~~ 936 (985)
.+. . ...+.+.++++. .+.|+++.++.+.|.++||.+..
T Consensus 493 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~Dp~~v~i~~~~~~~~G~~~~~g~~~~~l~~~L~~~gI~~e~ 572 (755)
T 2vyc_A 493 YDFADAPTKLLTTVQDCWVMHPGESWHGFKDIPDNWSMLDPIKVSILAPGMGEDGELEETGVPAALVTAWLGRHGIVPTR 572 (755)
T ss_dssp EEGGGSCHHHHHHCGGGTBCCTTCTTTCCTTCCTTSEEECTTEEEEECSCBCTTSSBCSSCCCHHHHHHHHHTTTCCCSE
T ss_pred cccccccchhccchhhhhccCcccccccccccCCCccccCCeEEEEEcCCCCCCCCccccCCcHHHHHHHHHHCCCEEee
Confidence 000 0 012344444211 11257779999999999998753
Q ss_pred CCCCCCCEEEEeccCCCCHHHHHHHHccCChhHHHHhhc
Q 001989 937 MSWPVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRLK 975 (985)
Q Consensus 937 ~~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~~ 975 (985)
.. .+.+|++++..+|++++++ ++++|+++.+...
T Consensus 573 ~~---~~~v~~~~~~g~t~~~~~~--l~~al~~~~~~~~ 606 (755)
T 2vyc_A 573 TT---DFQIMFLFSMGVTRGKWGT--LVNTLCSFKRHYD 606 (755)
T ss_dssp EC---SSEEEEECCTTCCTTTTHH--HHHHHHHHHHHHH
T ss_pred cC---CCeEEEEECCCCCHHHHHH--HHHHHHHHHHhhh
Confidence 32 4799999999999999999 7788888766543
|
| >3m5u_A Phosphoserine aminotransferase; alpha-beta half sandwich, csgid, amino-acid biosynthesis, cytoplasm, pyridoxal phosphate; HET: MES; 2.15A {Campylobacter jejuni} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.78 E-value=8.1e-19 Score=198.67 Aligned_cols=297 Identities=10% Similarity=0.033 Sum_probs=185.2
Q ss_pred hhHHHHHHHHHHHHHHHhCCCc-cc-ee-cCcHHHHHHHHHHHHHHHHHhcCCCCCCEE--EEcCCCCcccHHH--HHHC
Q 001989 628 QGYQEMFNNLGEWLCTITGFDS-FS-LQ-PNAGAAGEYAGLMVIRAYHKARGDHHRNVC--IIPVSAHGTNPAT--AAMC 700 (985)
Q Consensus 628 ~G~~~~~~e~~~~la~l~G~~~-~~-~~-~~sGa~a~~a~l~air~~~~~~g~~~~~~I--Iv~~~~Hg~~~~~--a~~~ 700 (985)
+.+.++++++++.+++++|.+. .. ++ .++|++++ .+++.++. +++++ ++.. .+ ++++. ++..
T Consensus 46 ~~~~~~~~~~r~~la~ll~~~~~~~v~f~t~~~T~a~---n~~~~~~~------~~~~~~~i~~~-~~-~~~~~~~a~~~ 114 (361)
T 3m5u_A 46 KVFEEVHFGAQEKAKKLYELNDDYEVLFLQGGASLQF---AMIPMNLA------LNGVCEYANTG-VW-TKKAIKEAQIL 114 (361)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHH---HHHHHHHC------CSSCEEEEECS-HH-HHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCceEEEEcCcHHHHH---HHHHHhcC------CCCeEEEEeCC-HH-HHHHHHHHHHc
Confidence 3467889999999999999963 23 44 55566555 44455442 23433 3332 22 44433 4567
Q ss_pred CcEEEEEcCCCCCC--CCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCCC
Q 001989 701 GMKIVSVGTDAKGN--INIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLT 777 (985)
Q Consensus 701 G~~vv~v~~d~~g~--iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~ 777 (985)
|+++++++++++|. +++++ + |+ ++|++|++++. |.+|++.++ | ++ +|++++||++|.++...+
T Consensus 115 G~~v~~~~~~~~g~~~~~~~~-~--l~---~~t~lv~~~~~e~~tG~~~~~---i---~~-~~~~~~vD~~q~~g~~~i- 180 (361)
T 3m5u_A 115 GVNVKTVASSEESNFDHIPRV-E--FS---DNADYAYICSNNTIYGTQYQN---Y---PK-TKTPLIVDASSDFFSRKV- 180 (361)
T ss_dssp TCCEEEEEECTTTTSCSCCCC-C--CC---TTSSEEEEESEETTTTEECSS---C---CC-CSSCEEEECGGGTTSSCC-
T ss_pred CCceEEEecccCcCCCcCChh-h--cC---CCCCEEEEeCCCCCcceeCCc---c---cc-cCCEEEEEcccccCCCCC-
Confidence 99999999988874 57766 3 76 78999988875 568998632 3 33 499999999997554443
Q ss_pred CCCccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCC----CccccCCCCCCCCCCCCCCCCCCcchhhhHHH
Q 001989 778 SPGYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPS----HPVVSTGGIPAPEKSQPLGTIAAAPWGSALIL 853 (985)
Q Consensus 778 ~pg~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~----~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~ 853 (985)
+.. .+|++++++||++ |.||+|++++++++.+.+++ .++.+... .......+|+++. +. ..+
T Consensus 181 d~~--~~d~~~~s~~K~~------gp~G~g~l~~~~~~~~~~~~~~~p~~~~~~~~-~~~~~~~~Tp~v~----~i-~~l 246 (361)
T 3m5u_A 181 DFS--NIALFYGGVQKNA------GISGLSCIFIRKDMLERSKNKQIPSMLNYLTH-AENQSLFNTPPTF----AI-YMF 246 (361)
T ss_dssp CCT--TEEEEEEETTTTS------SCTTCEEEEEEHHHHHHHHTCCCCGGGCHHHH-HHTTTCSSCCCHH----HH-HHH
T ss_pred Ccc--cCCEEEEechhcc------CCCccEEEEEcHHHHhhhcCCCCCceeehHHH-hhcCCCCCCccHH----HH-HHH
Confidence 222 3699999999998 34689999999876533211 11111000 0000112233332 11 112
Q ss_pred HHHHHHHHHhcHH-HHHHHHHHHHHHHHHHHHHhhccCCe--eecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHC
Q 001989 854 PISYTYIAMMGSK-GLTEASKIAILNANYMAKRLEKHYPI--LFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDY 930 (985)
Q Consensus 854 ~~a~a~l~~lg~e-Gl~~~~~~~~~~a~~l~~~L~~g~~l--~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~ 930 (985)
.+.++.+..+ |+.++.++..+++++++++|++..++ .+..+.......+.+.+++. .+.+ .++.+.|.++
T Consensus 247 ---~~al~~l~~~gG~~~i~~~~~~l~~~l~~~L~~~~g~~~~~~~~~~rs~~ivsf~~~~~---~~~~-~~~~~~L~~~ 319 (361)
T 3m5u_A 247 ---NLEMDWLLNQGGLDKVHEKNSQKATMLYECIDLSNGFYKGHADKKDRSLMNVSFNIAKN---KDLE-PLFVKEAEEA 319 (361)
T ss_dssp ---HHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHTSTTSEEESSCGGGBCSSEEEEEESSC---TTHH-HHHHHHHHHT
T ss_pred ---HHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHCCCeeeccCCHHHcCCeEEEEECCCc---hhhh-HHHHHHHHHC
Confidence 2345555555 68888889999999999999872212 11111111112344555410 0123 4788899999
Q ss_pred CCccCCCCCCCCCEEEEeccCCCCHHHHHHHHccCChhHHHHh
Q 001989 931 GFHGPTMSWPVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHR 973 (985)
Q Consensus 931 Gi~~~~~~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~ 973 (985)
||.+..-... .+++|+|+..++|+||||+ +++.|+++.++
T Consensus 320 gI~~~~g~~~-~g~iRiS~~~~~t~edId~--l~~al~~~~~~ 359 (361)
T 3m5u_A 320 GMIGLKGHRI-LGGIRASIYNALNLDQVKT--LCEFMKEFQGK 359 (361)
T ss_dssp TEECCBCCTT-TCSEEEECCTTSCHHHHHH--HHHHHHHHHHH
T ss_pred CCEEecCCCc-cCeEEEEccCCCCHHHHHH--HHHHHHHHHHh
Confidence 9987432211 2679999999999999999 77888888765
|
| >3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.77 E-value=1.6e-16 Score=179.93 Aligned_cols=298 Identities=11% Similarity=0.021 Sum_probs=205.4
Q ss_pred cCCCCCCCCCcHHHHHHHHhCCccccccCCChhhHhhhHHHHHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhh
Q 001989 171 IGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNI 250 (985)
Q Consensus 171 lG~g~y~~~~p~~v~~~i~~~~~~~t~~~pyq~e~sqg~l~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~ 250 (985)
++.|.++...|+.+.+++.+.-+ .+..|. . ....++++.+|+++|.++.++.+++|+|.+++.++.++ .
T Consensus 37 l~~~~~~~~~~~~v~~a~~~~~~---~~~~y~-~------~~~~~lr~~la~~~~~~~~~v~~~~g~t~a~~~~~~~~-~ 105 (363)
T 3ffh_A 37 LSSNENPLGTSKKVAAIQANSSV---ETEIYP-D------GWASSLRKEVADFYQLEEEELIFTAGVDELIELLTRVL-L 105 (363)
T ss_dssp CSSCSCTTCCCHHHHHHHHTCBS---CCCBC-----------CHHHHHHHHHHHTCCGGGEEEESSHHHHHHHHHHHH-C
T ss_pred ccCCCCCCCCCHHHHHHHHHHHH---HhhcCC-C------cchHHHHHHHHHHhCCChhhEEEeCCHHHHHHHHHHHH-c
Confidence 34555566677777656554322 222231 1 12457889999999998889999999998888777655 2
Q ss_pred hcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc--------hhhhc-cCCCEeEEEEEcC-CCCeeeccHHHHHH
Q 001989 251 QKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL--------KDIDY-KSGDVCGVLVQYP-GTEGEVLDYGDFIK 320 (985)
Q Consensus 251 ~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~--------~~l~~-l~~~t~~V~v~~p-n~~G~v~di~~I~~ 320 (985)
++||+|+++...|+++...++. .|++++.++. +++++ +++++++|++.+| |.+|.+.|++++.+
T Consensus 106 --~~gd~vl~~~~~~~~~~~~~~~----~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~p~nptG~~~~~~~l~~ 179 (363)
T 3ffh_A 106 --DTTTNTVMATPTFVQYRQNALI----EGAEVREIPLLQDGEHDLEGMLNAIDEKTTIVWICNPNNPTGNYIELADIQA 179 (363)
T ss_dssp --STTCEEEEEESSCHHHHHHHHH----HTCEEEEEECCTTSCCCHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHH
T ss_pred --cCCCEEEEcCCChHHHHHHHHH----cCCEEEEecCCCCCCcCHHHHHHhcccCCCEEEEeCCCCCcCCCcCHHHHHH
Confidence 3789999999999998887754 4778877754 35666 7889999999998 78999999999999
Q ss_pred HHHhC--CcEEEEEecCccccCC---CC----CCcccceEEEecC-ccccccCCCCCCcEEEEEEchhhHhcCCCceeee
Q 001989 321 NAHAN--GVKVVMATDLLALTIL---KP----PGELGADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGV 390 (985)
Q Consensus 321 ~a~~~--galliV~a~~~~lg~l---~~----~~~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~ 390 (985)
+++.+ |+++++|. ..+.... .. ....+-+++++|. |.++. +|..+|++++++++.+.+...
T Consensus 180 l~~~~~~~~~li~De-~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~----~G~r~G~~~~~~~~~~~l~~~---- 250 (363)
T 3ffh_A 180 FLDRVPSDVLVVLDE-AYIEYVTPQPEKHEKLVRTYKNLIITRTFSKIYGL----ASARVGYGIADKEIIRQLNIV---- 250 (363)
T ss_dssp HHTTSCTTSEEEEEC-TTGGGCSSCCCCCGGGGGTCTTEEEEEESSSTTCC----SSCCCEEEEECHHHHHHHHHT----
T ss_pred HHHhCCCCcEEEEeC-chHhhcCccccCHHHHhhcCCCEEEEeechhhhcC----chhceeeeecCHHHHHHHHHh----
Confidence 99988 99999953 3331111 11 1223445778776 76642 233459999998887665110
Q ss_pred eecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhc-CCCeEE
Q 001989 391 SIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKK-LGTVEV 469 (985)
Q Consensus 391 t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~-~g~~~~ 469 (985)
. ...+.| .....+..++ +. ..+.++++.++..++.+++.+.|++ .| +++
T Consensus 251 ------~----------------~~~~~~---~~~~~~~~~~--l~--~~~~~~~~~~~~~~~~~~l~~~l~~~~g-~~~ 300 (363)
T 3ffh_A 251 ------R----------------PPFNTT---SIGQKLAIEA--IK--DQAFIGECRTSNANGIKQYEAFAKRFEK-VKL 300 (363)
T ss_dssp ------C----------------CSCCCB---HHHHHHHHHH--HH--CHHHHHHHHHHHHHHHHHHHHHHHHCTT-CEE
T ss_pred ------C----------------CCCCCC---HHHHHHHHHH--hc--CHHHHHHHHHHHHHHHHHHHHHHhhCCC-ceE
Confidence 0 000111 1112222222 22 3367888999999999999999999 56 887
Q ss_pred cCCCCcceEEEecCC-HHHHHHHHHHcCceeeee----cCCeEEEEeccCCCHHHHHHHHHHHh
Q 001989 470 QGLPFFDTVKVKCAD-AHAIASAAYKIEMNLRVV----DSNTVTASFDETTTLEDVDKLFIVFA 528 (985)
Q Consensus 470 ~~~~~~~~~~~~~~~-~~~v~~~L~~~GI~~~~~----~~~~lris~t~~~t~edId~li~aL~ 528 (985)
... ...-+.+..+. ..++.+.|.++||.+... .++.+|++++ |++|+|+++++|+
T Consensus 301 ~~~-~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~iRis~~---~~~~i~~~~~~l~ 360 (363)
T 3ffh_A 301 YPA-NGNFVLIDLGIEAGTIFSYLEKNGYITRSGAALGFPTAVRITIG---KEEDNSAVIALLE 360 (363)
T ss_dssp CCC-CSSEEEEECSSCHHHHHHHHHHTTEECEETTTTTCTTEEEEECC---CHHHHHHHHHHHH
T ss_pred CCC-CCeEEEEECCCCHHHHHHHHHHCCeEEEeCccCCCCCeEEEECC---CHHHHHHHHHHHH
Confidence 632 12235566664 889999999999988653 2589999987 9999999999986
|
| >3frk_A QDTB; aminotransferase, sugar-modification, natural porduct; HET: TQP; 2.15A {Thermoanaerobacteriumthermosaccharolyticum} | Back alignment and structure |
|---|
Probab=99.77 E-value=2.1e-17 Score=188.19 Aligned_cols=280 Identities=13% Similarity=0.075 Sum_probs=193.3
Q ss_pred HHHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc--
Q 001989 211 ESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL-- 288 (985)
Q Consensus 211 ~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~-- 288 (985)
+.+.++++.+|+++|.+ ++.++++||.+++.++.++.. ++||+|+++...|+++...++. .|++++.++.
T Consensus 36 ~~~~~l~~~la~~~~~~--~~i~~~sgt~al~~~l~~l~~--~~gd~Vi~~~~~~~~~~~~~~~----~g~~~~~~~~~~ 107 (373)
T 3frk_A 36 DEDKKFEQEFADYCNVN--YCIGCGNGLDALHLILKGYDI--GFGDEVIVPSNTFIATALAVSY----TGAKPIFVEPDI 107 (373)
T ss_dssp HHHHHHHHHHHHHHTSS--EEEEESCHHHHHHHHHHHTTC--CTTCEEEEETTSCTHHHHHHHH----HSCEEEEECEET
T ss_pred chHHHHHHHHHHHhCCC--eEEEeCCHHHHHHHHHHHcCC--CCcCEEEECCCCcHHHHHHHHH----cCCEEEEEeccc
Confidence 34667889999999987 578889999888877766533 3889999999999999988754 3777777654
Q ss_pred -------hhhhc-cCCCEeEEEEEcCCCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCCCCCccc--ceEEEec--C
Q 001989 289 -------KDIDY-KSGDVCGVLVQYPGTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKPPGELG--ADIVVGS--A 356 (985)
Q Consensus 289 -------~~l~~-l~~~t~~V~v~~pn~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~~~~~~G--aDi~v~s--~ 356 (985)
+++++ +++++++|++++ ++|.+.|+++|.++|+++|+++++| +..+.|.......+| +|+++.| +
T Consensus 108 ~~~~~d~~~l~~~l~~~~~~v~~~n--~~G~~~~l~~i~~l~~~~~~~li~D-~a~~~g~~~~~~~~~~~~d~~~~S~~~ 184 (373)
T 3frk_A 108 RTYNIDPSLIESAITEKTKAIIAVH--LYGQPADMDEIKRIAKKYNLKLIED-AAQAHGSLYKGMKVGSLGDAAGFSFYP 184 (373)
T ss_dssp TTTEECGGGTGGGCCTTEEEEEEEC--CTTCCCCHHHHHHHHHHHTCEEEEE-CTTCTTCEETTEETTSSSSEEEEECCT
T ss_pred cccCcCHHHHHHhcCCCCeEEEEEC--CCcCcccHHHHHHHHHHcCCEEEEE-CCcccCCEECCEeccccccEEEEeCcC
Confidence 34566 778999988654 7899999999999999999999995 345555443334556 7999988 4
Q ss_pred -ccccccCCCCCCcEEEEEEch-hhHhcCCCceeeeeecCCCCc-ceeeecccccccccccccCCCccchhHHHHHHHHH
Q 001989 357 -QRFGVPMGYGGPHAAFLATSQ-EYKRMMPGRIVGVSIDSSGKP-ALRVAMQTREQHIRRDKATSNICTAQALLANMAAM 433 (985)
Q Consensus 357 -k~lg~P~~~GGP~~G~l~~~~-~~~~~lp~~~vG~t~d~~g~~-~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~ 433 (985)
|.+++ .+ ..|++++++ ++.+.+.....+ |.. .|.. ...|. |. .+.++.+++
T Consensus 185 ~K~l~~-~g----~gg~~~~~~~~~~~~~~~~~~~------g~~~~~~~----------~~~g~-~~----~~~~~~aa~ 238 (373)
T 3frk_A 185 AKNLGS-LG----DGGAVVTNDKDLAEKIKALSNY------GSEKKYHH----------IYKGF-NS----RLDELQAGF 238 (373)
T ss_dssp TSSSCC-SS----SCEEEEESCHHHHHHHHHHHBT------TCSBTTBC----------CSCCC-BC----CCCHHHHHH
T ss_pred CCccCc-cc----eeEEEEeCCHHHHHHHHHHHhc------CcccCCcc----------ccccc-cC----CCCHHHHHH
Confidence 55532 11 246777764 454443211111 100 0100 01111 11 111233333
Q ss_pred HHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCC-----CCcceEEEecCCHHHHHHHHHHcCceeeeec-----
Q 001989 434 YAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGL-----PFFDTVKVKCADAHAIASAAYKIEMNLRVVD----- 503 (985)
Q Consensus 434 ~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~-----~~~~~~~~~~~~~~~v~~~L~~~GI~~~~~~----- 503 (985)
.+...++++++.++..++++++++.|++++ +++... ..+..+.+..++..++.+.|.++||.++...
T Consensus 239 --~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~~~~~~~~ 315 (373)
T 3frk_A 239 --LRVKLKYLDKWNEERRKIAQKYIAGINNPN-VIIPVEADYAKHVWYTFVIRSEKRDELQKYLNNNGIGTLIHYPIPIH 315 (373)
T ss_dssp --HHHHHHTHHHHHHHHHHHHHHHHHHCCCTT-EECCCCCTTEECCCSSEEEEESSHHHHHHHHHHTTBCCBCSCSSCGG
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHhccCc-eEeccCCCCCceeeEEEEEEeCCHHHHHHHHHHCCCCcccCcCCccc
Confidence 222235778889999999999999999988 776532 1223455555458899999999999775321
Q ss_pred ----------------------CCeEEEEeccCCCHHHHHHHHHHHhCC
Q 001989 504 ----------------------SNTVTASFDETTTLEDVDKLFIVFAGG 530 (985)
Q Consensus 504 ----------------------~~~lris~t~~~t~edId~li~aL~~~ 530 (985)
.+.+|++++.++|++|||+++++|++-
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~t~~di~~~~~~l~~~ 364 (373)
T 3frk_A 316 LQQAYKDLGFKTGNFPIAEKIANEILSIPIWYGMKNEEIEYVIDKINAW 364 (373)
T ss_dssp GSGGGGGGCCCTTSSHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHTC
T ss_pred cChHHHhcCCCCCCCHHHHHHHhCEEEccCCCCCCHHHHHHHHHHHHHH
Confidence 157999999999999999999999864
|
| >1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism, pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A {Trypanosoma cruzi} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.77 E-value=5.4e-18 Score=195.86 Aligned_cols=303 Identities=12% Similarity=0.081 Sum_probs=192.0
Q ss_pred HHHHHHHHHhC------------CCccc-eecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCc
Q 001989 636 NLGEWLCTITG------------FDSFS-LQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGM 702 (985)
Q Consensus 636 e~~~~la~l~G------------~~~~~-~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~ 702 (985)
++++.++++++ .+... ++.++|++++..++.++ ..++++|+++.+.|..+...++..|+
T Consensus 79 ~lr~~la~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~al~~~~~~l--------~~~gd~vl~~~p~y~~~~~~~~~~g~ 150 (416)
T 1bw0_A 79 EAREAVATWWRNSFVHKEELKSTIVKDNVVLCSGGSHGILMAITAI--------CDAGDYALVPQPGFPHYETVCKAYGI 150 (416)
T ss_dssp HHHHHHHHHHHHHHCCSTTTGGGCCGGGEEEESHHHHHHHHHHHHH--------CCTTCEEEEEESCCTHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhhhcccccCCCCCCcceEEEeCChHHHHHHHHHHh--------CCCCCEEEEcCCCcHhHHHHHHHcCc
Confidence 45555666555 44434 44555666664444332 13678999988877777777888999
Q ss_pred EEEEEcCCCC--CCCCHHHHHHHHHhcCCCEEEEEEEcCC-CccccccC---HHHHHHHHHHcCCEEEEEccccccc-cC
Q 001989 703 KIVSVGTDAK--GNINIEELRKAAEANRDNLSTLMVTYPS-THGVYEEG---IDEICKIIHDNGGQVYMDGANMNAQ-VG 775 (985)
Q Consensus 703 ~vv~v~~d~~--g~iD~e~L~~~i~~~~~~t~~Vvv~~pn-~~G~i~~d---i~eI~~la~~~galliVD~a~~~~~-~~ 775 (985)
+++.+|++++ +.+|+++|+++++ +++++|++++|+ ++|.+. + +++|.++|+++|+++++|+++.... .+
T Consensus 151 ~~~~v~~~~~~~~~~d~~~l~~~l~---~~~~~v~i~~p~nptG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g 226 (416)
T 1bw0_A 151 GMHFYNCRPENDWEADLDEIRRLKD---DKTKLLIVTNPSNPCGSNF-SRKHVEDIVRLAEELRLPLFSDEIYAGMVFKG 226 (416)
T ss_dssp EEEEEEEEGGGTTEECHHHHHHHCC---TTEEEEEEESSCTTTCCCC-CHHHHHHHHHHHHHHTCCEEEECTTTTCBCCS
T ss_pred EEEEeecCcccCCCCCHHHHHHHhc---cCCeEEEEeCCCCCCCccc-CHHHHHHHHHHHHHcCCEEEEEccccccccCC
Confidence 9999998653 5689999999997 789999999995 699987 6 9999999999999999999985311 11
Q ss_pred ------CCCCCcc---CCcEEEeCCcccccccCCCCCCceEEEEEccc--ccCcCCCCccccCCCCCCCCCCCCCCCCCC
Q 001989 776 ------LTSPGYI---GADVCHLNLHKTFCIPHGGGGPGMGPIGVKKH--LAPFLPSHPVVSTGGIPAPEKSQPLGTIAA 844 (985)
Q Consensus 776 ------l~~pg~~---g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~--l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s 844 (985)
+.....+ +.++++.|++|+|+.| |.++|+++++++ +.+.+...... ....+.+.
T Consensus 227 ~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~----Glr~G~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~-- 291 (416)
T 1bw0_A 227 KDPNATFTSVADFETTVPRVILGGTAKNLVVP----GWRLGWLLYVDPHGNGPSFLEGLKR---------VGMLVCGP-- 291 (416)
T ss_dssp SCTTCCCCCTTSSCCSCCEEEEEESTTTTSCG----GGCCEEEEEECTTCSCHHHHHHHHH---------HHHHHTCS--
T ss_pred CCCCCCccCHHHccCCCcEEEEecchhhCCCC----CceEEEEEeeCchhhHHHHHHHHHH---------HhccccCC--
Confidence 1111111 2246778999998543 556899998763 43322100000 00000011
Q ss_pred cchhhhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhccCCeeecCCCCceeeEEEEEecCccccCCCCHHHHH
Q 001989 845 APWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVA 924 (985)
Q Consensus 845 ~~~g~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~ 924 (985)
+.....++.++|..+..+++.+..++..++++++.+.|++..++....+.+..+ +.+.++......+.+..++.
T Consensus 292 ----~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 365 (416)
T 1bw0_A 292 ----CTVVQAALGEALLNTPQEHLDQIVAKIEESAMYLYNHIGECIGLAPTMPRGAMY--LMSRIDLEKYRDIKTDVEFF 365 (416)
T ss_dssp ----CHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHHHTTSTTEEECCCCBTTE--EEEEECGGGBSSCCSHHHHH
T ss_pred ----CcHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCCeeEE--EEEeCCHHHcCCCCCHHHHH
Confidence 112223333455544566777778888889999999998632332222222222 23444310000124678888
Q ss_pred HHHH-HCCCccCCC-CCCCCCEEEEeccCCCCHHHHHHHHccCChhHHHHhhc
Q 001989 925 KRLM-DYGFHGPTM-SWPVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRLK 975 (985)
Q Consensus 925 ~~L~-~~Gi~~~~~-~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~~ 975 (985)
++|. ++||.+... .+..++++||+++ .++++|++ .++.|++++++.+
T Consensus 366 ~~l~~~~gi~v~~g~~f~~~~~iRis~~--~~~e~l~~--~l~~l~~~l~~~~ 414 (416)
T 1bw0_A 366 EKLLEEENVQVLPGTIFHAPGFTRLTTT--RPVEVYRE--AVERIKAFCQRHA 414 (416)
T ss_dssp HHHHHHHCEECEEGGGGTCTTEEEEECC--SCHHHHHH--HHHHHHHHHHHHB
T ss_pred HHHHHHCCEEEecccccCCCCeEEEEec--CCHHHHHH--HHHHHHHHHHHhh
Confidence 8884 789987542 2323589999995 68999999 7788888887654
|
| >1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A {Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A* 1pg8_A* 1ukj_A* 2o7c_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=5.4e-17 Score=186.78 Aligned_cols=276 Identities=17% Similarity=0.118 Sum_probs=192.1
Q ss_pred HHHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc--
Q 001989 211 ESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL-- 288 (985)
Q Consensus 211 ~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~-- 288 (985)
....++++.+++++|.+ ...++.+||++++.++.++ . ++||+|++++..|+++...++.+++..|++++.++.
T Consensus 65 ~~~~~l~~~la~~~g~~--~~i~~~sG~~a~~~~l~~~-~--~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d 139 (398)
T 1gc0_A 65 PTLNLLEARMASLEGGE--AGLALASGMGAITSTLWTL-L--RPGDEVLLGNTLYGCTFAFLHHGIGEFGVKLRHVDMAD 139 (398)
T ss_dssp HHHHHHHHHHHHHHTCS--EEEEESSHHHHHHHHHHHH-C--CTTCEEEEESSCCSHHHHHHHHTGGGGTCEEEEECTTC
T ss_pred hHHHHHHHHHHHHhCCC--cEEEECCHHHHHHHHHHHH-h--cCCCEEEEeCCCchhHHHHHHHHHHHcCCEEEEECCCC
Confidence 44567889999999987 4667778887777666554 2 378999999999999999987666678999999875
Q ss_pred -hhhhc-cCCCEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCCCCCcccceEEEecC-ccccccCC
Q 001989 289 -KDIDY-KSGDVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKPPGELGADIVVGSA-QRFGVPMG 364 (985)
Q Consensus 289 -~~l~~-l~~~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~~~~~~GaDi~v~s~-k~lg~P~~ 364 (985)
+++++ +++++++|++++| |.+|.+.|+++|+++||++|+++++| +.++.+....+..+|+|+++.|. |.|++|
T Consensus 140 ~~~l~~~i~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D-~~~~~~~~~~~~~~~~d~~~~S~sK~~~~~-- 216 (398)
T 1gc0_A 140 LQALEAAMTPATRVIYFESPANPNMHMADIAGVAKIARKHGATVVVD-NTYCTPYLQRPLELGADLVVHSATKYLSGH-- 216 (398)
T ss_dssp HHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHGGGTCEEEEE-CTTTHHHHCCGGGGTCSEEEEETTTTTTCS--
T ss_pred HHHHHHhcCCCCeEEEEECCCCCCcccccHHHHHHHHHHcCCEEEEE-CCCcccccCCchhhCceEEEECCccccCCC--
Confidence 45666 7889999999998 67999999999999999999999995 35555544455678999999998 777643
Q ss_pred CCCCcEEEEEEchhhHh-cCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcchH
Q 001989 365 YGGPHAAFLATSQEYKR-MMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGL 443 (985)
Q Consensus 365 ~GGP~~G~l~~~~~~~~-~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl 443 (985)
|+|-+|+++++++.++ .+.... +. ...++.|. ...++..++ .+.+
T Consensus 217 -~~~~~G~l~~~~~~~~~~~~~~~----------------------~~-~~~~~~~~---~~~~~~~~~-------l~~~ 262 (398)
T 1gc0_A 217 -GDITAGIVVGSQALVDRIRLQGL----------------------KD-MTGAVLSP---HDAALLMRG-------IKTL 262 (398)
T ss_dssp -SSCCCEEEEECHHHHHHHHHTHH----------------------HH-HTCCCCCH---HHHHHHHHH-------HTTH
T ss_pred -CCCeEEEEEEChHHHHHHHHHHh----------------------hc-cCCCCCCH---HHHHHHHhc-------cchH
Confidence 2233589999877654 221000 00 00111111 111111111 1345
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCeE--------------EcCC---CCcceEEEecCC-HHHHHHHHHHcCceeee----
Q 001989 444 KTIAQRVHGLAGTFALGLKKLGTVE--------------VQGL---PFFDTVKVKCAD-AHAIASAAYKIEMNLRV---- 501 (985)
Q Consensus 444 ~~i~~~~~~~a~~l~~~L~~~g~~~--------------~~~~---~~~~~~~~~~~~-~~~v~~~L~~~GI~~~~---- 501 (985)
+...++..+++.++.+.|++++.++ +..+ ...+.+.|.+++ ..++.+.|.+.|+....
T Consensus 263 ~~~~~~~~~~~~~l~~~L~~~~~v~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~i~~~~~s~G 342 (398)
T 1gc0_A 263 NLRMDRHCANAQVLAEFLARQPQVELIHYPGLASFPQYTLARQQMSQPGGMIAFELKGGIGAGRRFMNALQLFSRAVSLG 342 (398)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCTTEEEEEEC----------------CCTTEEEEEETTHHHHHHHHHHHCSSSEECSCCS
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCeeEEECCCCCCCcCHHHHHhhCCCCceEEEEEECCCHHHHHHHHHhCCCceeccCCC
Confidence 6667777888888888888764333 1111 123456777766 55677777777875421
Q ss_pred --------------------------ecCCeEEEEeccCCCHHHHHHHHHHHh
Q 001989 502 --------------------------VDSNTVTASFDETTTLEDVDKLFIVFA 528 (985)
Q Consensus 502 --------------------------~~~~~lris~t~~~t~edId~li~aL~ 528 (985)
+.++.+|+|++..+++++|+.|.++|.
T Consensus 343 ~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~g~~~~~~~i~~l~~al~ 395 (398)
T 1gc0_A 343 DAESLAQHPASMTHSSYTPEERAHYGISEGLVRLSVGLEDIDDLLADVQQALK 395 (398)
T ss_dssp CSSCEEECGGGTTTSSSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHH
T ss_pred CcceeeecccccccccCCHHHHHhcCCCCCeEEEEeCcCCHHHHHHHHHHHHH
Confidence 013789999999999999999999986
|
| >3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent transferase-like fold, ST genomics, joint center for structural genomics, JCSG; HET: MSE LLP PLP; 1.55A {Mesorhizobium loti} PDB: 3fcr_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=5.7e-17 Score=190.32 Aligned_cols=312 Identities=15% Similarity=0.150 Sum_probs=191.7
Q ss_pred HHHHHHHHHHHHHhCCCcc-ceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEE-cCCCCcccHHHHHHCC--------
Q 001989 632 EMFNNLGEWLCTITGFDSF-SLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCII-PVSAHGTNPATAAMCG-------- 701 (985)
Q Consensus 632 ~~~~e~~~~la~l~G~~~~-~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv-~~~~Hg~~~~~a~~~G-------- 701 (985)
+...+++++++++++.+.. .++.+||++|+++++++++.|...+|..++++||+ ...+||.........|
T Consensus 95 ~~~~~la~~l~~~~~~~~~~v~~~~gGseA~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~ 174 (460)
T 3gju_A 95 EASITLAKMIIDRAPKGMSRVYFGLSGSDANETNIKLIWYYNNVLGRPEKKKIISRWRGYHGSGVMTGSLTGLDLFHNAF 174 (460)
T ss_dssp HHHHHHHHHHHHHSCTTEEEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHCCCGGGTTTT
T ss_pred HHHHHHHHHHHhhCCCCcCEEEEeCchHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCCHHHhhccCCccccccc
Confidence 3456788999999865543 46678999999999998888766666445677877 5678887766544322
Q ss_pred ----cEEEEEcCCC-----CCCCC--------HHHHHHHHHhcC-CCEEEEEEEcCC-CccccccC---HHHHHHHHHHc
Q 001989 702 ----MKIVSVGTDA-----KGNIN--------IEELRKAAEANR-DNLSTLMVTYPS-THGVYEEG---IDEICKIIHDN 759 (985)
Q Consensus 702 ----~~vv~v~~d~-----~g~iD--------~e~L~~~i~~~~-~~t~~Vvv~~pn-~~G~i~~d---i~eI~~la~~~ 759 (985)
..+..+|... +...| +++|++++++.. +++++|+++.++ +.|.+.++ +++|.++|+++
T Consensus 175 ~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~le~~i~~~~~~~~aaii~ep~~~~~G~~~~~~~~l~~l~~l~~~~ 254 (460)
T 3gju_A 175 DLPRAPVLHTEAPYYFRRTDRSMSEEQFSQHCADKLEEMILAEGPETIAAFIGEPILGTGGIVPPPAGYWEKIQAVLKKY 254 (460)
T ss_dssp TCSCTTEEEECCCCGGGCSCTTCCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHT
T ss_pred CCCCCCCEEeCCCccccCCccccChhHHHHHHHHHHHHHHHhcCCCCEEEEEECCccCCCCCccCCHHHHHHHHHHHHHc
Confidence 1345555322 11123 689999987432 467777776554 46765411 99999999999
Q ss_pred CCEEEEEccccccccCCCCCCc--------cCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCC
Q 001989 760 GGQVYMDGANMNAQVGLTSPGY--------IGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIP 831 (985)
Q Consensus 760 galliVD~a~~~~~~~l~~pg~--------~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~ 831 (985)
|++||+|+++. ++.+.+. ..+|++++| |+++ +|+..+|++++++++.+.+....... .
T Consensus 255 ~~llI~DEv~~----g~gr~g~~~~~~~~~~~pdi~t~s--K~l~----gG~~~lg~v~~~~~i~~~~~~~~~~~-~--- 320 (460)
T 3gju_A 255 DVLLVADEVVT----GFGRLGTMFGSDHYGIKPDLITIA--KGLT----SAYAPLSGVIVADRVWQVLVQGSDKL-G--- 320 (460)
T ss_dssp TCEEEEECTTT----TTTTTSSSCHHHHHTCCCSEEEEC--GGGT----TTSSCCEEEEEEHHHHHHHHHHHHHH-C---
T ss_pred CCEEEEecccc----CCCcccccchHhhcCCCCCeeeee--hhhc----CCCCCeEEEEECHHHHHHHhcccccc-c---
Confidence 99999999874 2222221 236888764 8873 23367899998887765542100000 0
Q ss_pred CCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc---cCC-ee-ecCCCCceeeEEE
Q 001989 832 APEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK---HYP-IL-FRGVNGTVAHEFI 906 (985)
Q Consensus 832 ~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~---g~~-l~-~~~~~~~~~~~~i 906 (985)
. . ...+++.+++++++++.+.|..+..+++. ++..++.++++++|.+ .+. +. ..+ .+.+ +.
T Consensus 321 ---~---~-~~~~t~~~~~~~~aaa~aal~~~~~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~~~~~-~g~~---~~ 386 (460)
T 3gju_A 321 ---S---L-GHGWTYSAHPICVAAGVANLELIDEMDLV---TNAGETGAYFRAELAKAVGGHKNVGEVRG-DGML---AA 386 (460)
T ss_dssp ---S---C-SCCCTTTTCHHHHHHHHHHHHHHHHTTHH---HHHHHHHHHHHHHHHHHHTTSTTEEEEEE-ETTE---EE
T ss_pred ---c---c-ccCCCCCCCHHHHHHHHHHHHHHHhccHH---HHHHHHHHHHHHHHHHHHhcCCCeEEEee-eeEE---EE
Confidence 0 0 00011223455556666777766554433 3455566666666643 122 11 111 1221 22
Q ss_pred EEecCccc------cCCCCHHHHHHHHHHCCCccCCCCCCCCCEEEEeccCCCCHHHHHHHHccCChhHHHHhhc
Q 001989 907 VDLRGLKN------TAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRLK 975 (985)
Q Consensus 907 v~~~~~~~------~~g~~~~~v~~~L~~~Gi~~~~~~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~~ 975 (985)
+.+..-.. .......++.+.|.++|+.+..... .+.+||+|+...|+|||++ +++.|+++++++.
T Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~--~~~iRi~~~~~~t~e~i~~--~l~~l~~~l~~~~ 457 (460)
T 3gju_A 387 VEFVADKDDRVFFDASQKIGPQVATALAASGVIGRAMPQ--GDILGFAPPLCLTREQADI--VVSKTADAVKSVF 457 (460)
T ss_dssp EEECSBTTTTBCCCGGGCHHHHHHHHHHHTTEECEECSS--SCEEEECCCTTCCHHHHHH--HHHHHHHHHHHHH
T ss_pred EEEccCccccccccchHHHHHHHHHHHHHCCeEEecCCC--CCEEEEECCCCCCHHHHHH--HHHHHHHHHHHHH
Confidence 33321000 0001156789999999998754431 3899999999999999999 8899999888764
|
| >3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST genomics, protein structure initiative; HET: PLP; 2.00A {Rhodobacter sphaeroides 2} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.3e-17 Score=196.54 Aligned_cols=312 Identities=15% Similarity=0.121 Sum_probs=196.8
Q ss_pred HHHHHHHHHHHHHhCCCc-cceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEE-cCCCCcccHHHHHHCCc-------
Q 001989 632 EMFNNLGEWLCTITGFDS-FSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCII-PVSAHGTNPATAAMCGM------- 702 (985)
Q Consensus 632 ~~~~e~~~~la~l~G~~~-~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv-~~~~Hg~~~~~a~~~G~------- 702 (985)
+...+++++++++++.+. ..++.+||++|+++++++++.+...+|..++++||+ ...+||.........|.
T Consensus 97 ~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Aik~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~ 176 (476)
T 3i5t_A 97 SPAARLAEKIATLTPGDLNRIFFTTGGSTAVDSALRFSEFYNNVLGRPQKKRIIVRYDGYHGSTALTAACTGRTGNWPNF 176 (476)
T ss_dssp HHHHHHHHHHHTTSSTTCCEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHTCCCGGGCTTS
T ss_pred HHHHHHHHHHHhcCCCCcCEEEEeCchHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCcCcCChhhccccCChhhcccc
Confidence 345688899999986433 346778999999999999988876676555677776 56788877655432221
Q ss_pred -----EEEEEcCCC--CC-CCC--------HHHHHHHHHhcC-CCEEEEEEEcCC-CccccccC---HHHHHHHHHHcCC
Q 001989 703 -----KIVSVGTDA--KG-NIN--------IEELRKAAEANR-DNLSTLMVTYPS-THGVYEEG---IDEICKIIHDNGG 761 (985)
Q Consensus 703 -----~vv~v~~d~--~g-~iD--------~e~L~~~i~~~~-~~t~~Vvv~~pn-~~G~i~~d---i~eI~~la~~~ga 761 (985)
.+..++... .. ..| +++|++++++.. +++++|+++.++ ..|.+.++ +++|.++|+++|+
T Consensus 177 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~aavi~ep~~~~~G~~~~~~~~L~~l~~lc~~~gi 256 (476)
T 3i5t_A 177 DIAQDRISFLSSPNPRHAGNRSQEAFLDDLVQEFEDRIESLGPDTIAAFLAEPILASGGVIIPPAGYHARFKAICEKHDI 256 (476)
T ss_dssp CCCCTTEEEECCCCGGGCTTSCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHTTC
T ss_pred CCCCCCcEEeCCCcccccCCCchHHHHHHHHHHHHHHHHhcCCCCEEEEEECCccCCCCcccCCHHHHHHHHHHHHHcCC
Confidence 233444321 11 112 889999987432 467888887653 56765422 9999999999999
Q ss_pred EEEEEccccccccCCCCC---C-c--cCCcEEEeCCcccccccCCCCC-CceEEEEEcccccCcCCCCccccCCCCCCCC
Q 001989 762 QVYMDGANMNAQVGLTSP---G-Y--IGADVCHLNLHKTFCIPHGGGG-PGMGPIGVKKHLAPFLPSHPVVSTGGIPAPE 834 (985)
Q Consensus 762 lliVD~a~~~~~~~l~~p---g-~--~g~Di~~~s~hK~l~~p~g~GG-Pg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~ 834 (985)
+||+|++|. +++-.+.. . . ..+|+++++ |+++ || ..+|++++++++.+.+......
T Consensus 257 llI~DEv~~-g~gr~G~~~~~~~~~~v~pdi~t~s--K~l~-----~G~~plg~v~~~~~i~~~~~~~~~~--------- 319 (476)
T 3i5t_A 257 LYISDEVVT-GFGRCGEWFASEKVFGVVPDIITFA--KGVT-----SGYVPLGGLAISEAVLARISGENAK--------- 319 (476)
T ss_dssp EEEEECTTT-TTTTTSSSCHHHHTTCCCCSEEEEC--GGGG-----TTSSCCEEEEECHHHHHTTSGGGCT---------
T ss_pred EEEEEeccc-CCccccCceeeecccCCCcchhhhh--hhhc-----CCCcCeEEEEECHHHHHHHhcCCcc---------
Confidence 999999874 22111111 1 1 236888765 8874 45 6788999998877655321000
Q ss_pred CCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhcc--CCee--ecCCCCceeeEEEEEec
Q 001989 835 KSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKH--YPIL--FRGVNGTVAHEFIVDLR 910 (985)
Q Consensus 835 ~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~g--~~l~--~~~~~~~~~~~~iv~~~ 910 (985)
.... ...+++.+++++++++.+.|..+..+++ .++..++.++++++|++. +..+ +.+ .+. + +.+.+.
T Consensus 320 -~~~~-~~~~t~~~np~a~aAa~aaL~~~~~~~~---~~~~~~~~~~l~~~L~~l~~~~~v~~v~~-~G~-~--~~i~~~ 390 (476)
T 3i5t_A 320 -GSWF-TNGYTYSNQPVACAAALANIELMEREGI---VDQAREMADYFAAALASLRDLPGVAETRS-VGL-V--GCVQCL 390 (476)
T ss_dssp -TCEE-CCCCTTTTCHHHHHHHHHHHHHHHHTTH---HHHHHHHHHHHHHHHHTTTTSTTEEEEEE-ETT-E--EEEEEC
T ss_pred -cccc-cccCCCCcCHHHHHHHHHHHHHHHhHHH---HHHHHHHHHHHHHHHHHHhcCCCeEEEEe-cCc-e--eEEEEe
Confidence 0000 0011233456666777777777655444 446667788888888751 2211 111 111 1 233432
Q ss_pred CccccCCC-------CHHHHHHHHHHCCCccCCCCCCCCCEEEEeccCCCCHHHHHHHHccCChhHHHHhhcc
Q 001989 911 GLKNTAGI-------EPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRLKM 976 (985)
Q Consensus 911 ~~~~~~g~-------~~~~v~~~L~~~Gi~~~~~~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~~~ 976 (985)
.... ... ....+.+.|.++|+.+... .+.+||+|+..+|++|||+ +++.|+++++++..
T Consensus 391 ~~~~-~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~----g~~iRi~p~l~~t~e~i~~--~l~~l~~~l~~~~~ 456 (476)
T 3i5t_A 391 LDPT-RADGTAEDKAFTLKIDERCFELGLIVRPL----GDLCVISPPLIISRAQIDE--MVAIMRQAITEVSA 456 (476)
T ss_dssp CC------CCHHHHHHHHHHHHHHHHTTEECEEE----TTEEEECCCTTCCHHHHHH--HHHHHHHHHHHHHH
T ss_pred cCcc-ccccccchhHHHHHHHHHHHHCCCEEEec----CCEEEEECCCCCCHHHHHH--HHHHHHHHHHHHHH
Confidence 1000 000 1567889999999988543 2799999999999999999 88999999877654
|
| >1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis, pyridoxal 5'-phosphate, gamma-famil; HET: PLP; 2.90A {Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A* 1i43_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=6.4e-18 Score=196.86 Aligned_cols=209 Identities=18% Similarity=0.168 Sum_probs=148.5
Q ss_pred HHHHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHH----HHHCCcEEEEE
Q 001989 632 EMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPAT----AAMCGMKIVSV 707 (985)
Q Consensus 632 ~~~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~----a~~~G~~vv~v 707 (985)
...+++++.+++++|.+ ..+.+++|++|+..+++++ . .++++||+++..|+..... ++..|++++.+
T Consensus 114 ~~~~~l~~~lA~l~g~~-~~v~~~sG~~Ai~~al~~l---~-----~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~v~~v 184 (445)
T 1qgn_A 114 PTTVVLEEKISALEGAE-STLLMASGMCASTVMLLAL---V-----PAGGHIVTTTDCYRKTRIFIETILPKMGITATVI 184 (445)
T ss_dssp HHHHHHHHHHHHHHTCS-EEEEESCHHHHHHHHHHHH---S-----CSSCEEEEETTSCHHHHHHHHHTGGGGTCEEEEE
T ss_pred hHHHHHHHHHHHHhCCC-cEEEeCCHHHHHHHHHHHH---h-----CCCCEEEEcCCCchhHHHHHHHHHHHcCCEEEEe
Confidence 34668899999999987 4566778887665444432 1 3678999988777654332 45679999999
Q ss_pred cCCCCCCCCHHHHHHHHHhcCCCE-EEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCccCCc
Q 001989 708 GTDAKGNINIEELRKAAEANRDNL-STLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIGAD 785 (985)
Q Consensus 708 ~~d~~g~iD~e~L~~~i~~~~~~t-~~Vvv~~p-n~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~g~D 785 (985)
+.+ |+++|+++|+ ++| ++|++++| |++|.+. |+++|+++||++|+++++|+++..+. ...|..+|+|
T Consensus 185 ~~~-----d~~~l~~ai~---~~tv~lV~le~p~NptG~v~-dl~~I~~la~~~g~~livD~a~~~~~--~~~~~~~g~D 253 (445)
T 1qgn_A 185 DPA-----DVGALELALN---QKKVNLFFTESPTNPFLRCV-DIELVSKLCHEKGALVCIDGTFATPL--NQKALALGAD 253 (445)
T ss_dssp CSS-----CHHHHHHHHH---HSCEEEEEEESSCTTTCCCC-CHHHHHHHHHHTTCEEEEECTTTCTT--TCCTTTTTCS
T ss_pred CCC-----CHHHHHHHhc---cCCCCEEEEeCCCCCCCccc-CHHHHHHHHHHcCCEEEEECCCcccc--cCCccccCCE
Confidence 874 8999999998 688 99999998 4799998 89999999999999999999985332 3456678999
Q ss_pred EEEeCCcccccccCCCCCCc---eEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHH
Q 001989 786 VCHLNLHKTFCIPHGGGGPG---MGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAM 862 (985)
Q Consensus 786 i~~~s~hK~l~~p~g~GGPg---~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~ 862 (985)
+++.|+||+|+ |+| +|++++++++.+.+.... . ..+...+ +. .+|..+..
T Consensus 254 iv~~S~sK~~g------g~gd~~~G~l~~~~~l~~~l~~~~--~-----------~~g~~~~-----~~---~a~~~~~~ 306 (445)
T 1qgn_A 254 LVLHSATKFLG------GHNDVLAGCISGPLKLVSEIRNLH--H-----------ILGGALN-----PN---AAYLIIRG 306 (445)
T ss_dssp EEEECTTTTTT------CSSSCCCEEEEECHHHHHHHHHHH--H-----------HHCCCCC-----HH---HHHHHHHH
T ss_pred EEEECCccccc------ccccceEEEEEECHHHHHHHHHHH--H-----------HhCCCCC-----HH---HHHHHHHh
Confidence 99999999984 344 899999877654432110 0 0011111 11 12322232
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHHhhcc
Q 001989 863 MGSKGLTEASKIAILNANYMAKRLEKH 889 (985)
Q Consensus 863 lg~eGl~~~~~~~~~~a~~l~~~L~~g 889 (985)
+ +.+....++..++++++.+.|++.
T Consensus 307 l--~~l~~r~~~~~~~a~~l~~~L~~~ 331 (445)
T 1qgn_A 307 M--KTLHLRVQQQNSTALRMAEILEAH 331 (445)
T ss_dssp G--GGHHHHHHHHHHHHHHHHHHHHTC
T ss_pred H--HHHHHHHHHHHHHHHHHHHHHhcC
Confidence 2 344555666778889999999874
|
| >2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea, thermococcus L transferase; HET: PMP; 2.30A {Thermococcus litoralis} | Back alignment and structure |
|---|
Probab=99.77 E-value=8.8e-18 Score=193.37 Aligned_cols=304 Identities=16% Similarity=0.082 Sum_probs=191.4
Q ss_pred hhHHHHHHHHHHHHHHHhCC--Cccc-eecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEE
Q 001989 628 QGYQEMFNNLGEWLCTITGF--DSFS-LQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKI 704 (985)
Q Consensus 628 ~G~~~~~~e~~~~la~l~G~--~~~~-~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~v 704 (985)
+|..++.+++.+++.+.+|. +... ++.++|++|+..++.++. .++++|+++.+.|..+...++..|+++
T Consensus 75 ~~~~~l~~~la~~~~~~~g~~~~~~~v~~t~g~t~a~~~~~~~~~--------~~gd~vl~~~p~~~~~~~~~~~~g~~~ 146 (407)
T 2zc0_A 75 NGIPELREELAAFLKKYDHLEVSPENIVITIGGTGALDLLGRVLI--------DPGDVVITENPSYINTLLAFEQLGAKI 146 (407)
T ss_dssp TCCHHHHHHHHHHHHHHSCCCCCGGGEEEESHHHHHHHHHHHHHC--------CTTCEEEEEESCCHHHHHHHHTTTCEE
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCcceEEEecCHHHHHHHHHHHhc--------CCCCEEEEeCCChHHHHHHHHHcCCEE
Confidence 34444444445555444484 3444 445555666654444331 367899998877766666677889999
Q ss_pred EEEcCCCCCCCCHHHHHHHHHh---cCCCEEEEE-EEcC-CCccccccCHH---HHHHHHHHcCCEEEEEcccccccc-C
Q 001989 705 VSVGTDAKGNINIEELRKAAEA---NRDNLSTLM-VTYP-STHGVYEEGID---EICKIIHDNGGQVYMDGANMNAQV-G 775 (985)
Q Consensus 705 v~v~~d~~g~iD~e~L~~~i~~---~~~~t~~Vv-v~~p-n~~G~i~~di~---eI~~la~~~galliVD~a~~~~~~-~ 775 (985)
+.+|+++++ +|+++|++++++ ..+++++|+ +++| |++|.+. |++ +|+++|+++|+++|+|+++..... +
T Consensus 147 ~~v~~~~~~-~d~~~l~~~l~~~~~~~~~~~~v~~~~~~~nptG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~ 224 (407)
T 2zc0_A 147 EGVPVDNDG-MRVDLLEEKIKELKAKGQKVKLIYTIPTGQNPMGVTM-SMERRKALLEIASKYDLLIIEDTAYNFMRYEG 224 (407)
T ss_dssp EEEEEETTE-ECHHHHHHHHHHHHHTTCCEEEEEECCSSCTTTCCCC-CHHHHHHHHHHHHHHTCEEEEECTTTTSBSSC
T ss_pred EEcccCCCC-CCHHHHHHHHHhhhcccCCceEEEECCCCCCCCCcCC-CHHHHHHHHHHHHHcCCEEEEECCCcccccCC
Confidence 999987665 999999999972 113788874 5677 4699987 665 999999999999999999853211 1
Q ss_pred C--CCCCcc---CCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhh
Q 001989 776 L--TSPGYI---GADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSA 850 (985)
Q Consensus 776 l--~~pg~~---g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~ 850 (985)
- .....+ +.++++.|++|+|+ | |.++|++++++++.+.+.... . ..+.+++ .
T Consensus 225 ~~~~~~~~~~~~~~~i~~~s~sK~~~-~----G~r~G~~~~~~~~~~~~~~~~------------~--~~~~~~~----~ 281 (407)
T 2zc0_A 225 GDIVPLKALDNEGRVIVAGTLSKVLG-T----GFRIGWIIAEGEILKKVLMQK------------Q--PIDFCAP----A 281 (407)
T ss_dssp SSCCCGGGGCSSCCEEEEEESTTTTC-T----TSCCEEEECCHHHHHHHHHHH------------T--TTTSSSC----H
T ss_pred CCCCChhhcCCCCCEEEEcccccccC-C----CcceEEEecCHHHHHHHHHHH------------H--hhcCCCC----H
Confidence 0 011112 34577888999985 3 456899998877655432110 0 0011111 1
Q ss_pred HHHHHHHHHHHHhc-H-HHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHH
Q 001989 851 LILPISYTYIAMMG-S-KGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRL 927 (985)
Q Consensus 851 ~~~~~a~a~l~~lg-~-eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L 927 (985)
....++.+++.... . +.+.+..++..++++++.+.|++ ..++.+..+.+..+ +.+.++ .+.+..++.++|
T Consensus 282 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~--~~~~~~-----~~~~~~~l~~~l 354 (407)
T 2zc0_A 282 ISQYIALEYLKRGYFEKYHLEGALLGYKEKRDIMLKALENHLPNAEFTKPIAGMF--VMFFLP-----EGADGISFANEL 354 (407)
T ss_dssp HHHHHHHHHHHTTHHHHHTTTTHHHHHHHHHHHHHHHHHHHCTTSCBCCCSBSSE--EEEECS-----TTCCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEecCCCcEE--EEEEcC-----CCCCHHHHHHHH
Confidence 22222333443221 2 34555566677888899999976 22222212222222 345654 246788999999
Q ss_pred HHC-CCccCCCC-C-C---CCCEEEEeccCCCCHHHHHHHHccCChhHHHHhh
Q 001989 928 MDY-GFHGPTMS-W-P---VPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRL 974 (985)
Q Consensus 928 ~~~-Gi~~~~~~-~-p---~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~ 974 (985)
.++ ||.+.... + + ..+++||+++.. |++||++ +++.|+++++++
T Consensus 355 ~~~~gi~v~~g~~~~~~~~~~~~iRis~~~~-~~~~i~~--~~~~l~~~l~~~ 404 (407)
T 2zc0_A 355 MEREGVVVVPGKPFYTDESGKNAIRLNFSRP-SKEEIPI--GIKKLAKLYKEK 404 (407)
T ss_dssp HHHTCEECBCSGGGCSSSCCTTEEEEECSSS-CTTHHHH--HHHHHHHHHHHH
T ss_pred HHhCCeEEECchhccCCCCCCCeEEEEeCCC-CHHHHHH--HHHHHHHHHHHH
Confidence 998 99875422 2 1 247899999877 8999999 788888888764
|
| >3qhx_A Cystathionine gamma-synthase METB (CGS); structural genomics, seattle structural genomics center for infectious disease, ssgcid, CGS_LIKE; HET: LLP EPE; 1.65A {Mycobacterium ulcerans} SCOP: c.67.1.0 PDB: 3qi6_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=6.5e-18 Score=194.17 Aligned_cols=277 Identities=16% Similarity=0.152 Sum_probs=182.8
Q ss_pred HHHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHH----HHCCcEEEEEc
Q 001989 633 MFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATA----AMCGMKIVSVG 708 (985)
Q Consensus 633 ~~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a----~~~G~~vv~v~ 708 (985)
...++++.+++++|.+. .+++++|++|+.++++++. .++++||++...|+...... +..|++++.++
T Consensus 67 ~~~~l~~~la~~~g~~~-~~~~~sGt~A~~~al~~~~--------~~gd~Vi~~~~~y~~~~~~~~~~~~~~g~~~~~v~ 137 (392)
T 3qhx_A 67 TRTALEAALAAVEDAAF-GRAFSSGMAAADCALRAML--------RPGDHVVIPDDAYGGTFRLIDKVFTGWNVEYTPVA 137 (392)
T ss_dssp HHHHHHHHHHHHTTCSE-EEEESSHHHHHHHHHHHHC--------CTTCEEEEETTCCHHHHHHHHHTGGGGTCEEEEEC
T ss_pred HHHHHHHHHHHHhCCCc-EEEECCHHHHHHHHHHHHh--------CCCCEEEEeCCCcchHHHHHHHHHHhcCcEEEEeC
Confidence 35688999999999874 4666788887765555431 36789999888776544433 56799999999
Q ss_pred CCCCCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCccCCcEE
Q 001989 709 TDAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIGADVC 787 (985)
Q Consensus 709 ~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~g~Di~ 787 (985)
++ |+++|+++++ +++++|++++| |++|.+. |+++|+++|+++|+++|+|+++... ....|..+++|++
T Consensus 138 ~~-----d~~~l~~~i~---~~~~~v~~~~~~nptG~~~-~l~~i~~la~~~g~~li~D~~~~~~--~~~~~~~~~~di~ 206 (392)
T 3qhx_A 138 LA-----DLDAVRAAIR---PTTRLIWVETPTNPLLSIA-DIAGIAQLGADSSAKVLVDNTFASP--ALQQPLSLGADVV 206 (392)
T ss_dssp TT-----CHHHHHHHCC---TTEEEEEEESSCTTTCCCC-CHHHHHHHHHHHTCEEEEECTTTCT--TTCCGGGGTCSEE
T ss_pred CC-----CHHHHHHhhC---CCCeEEEEECCCCCCcEEe-cHHHHHHHHHHcCCEEEEECCCccc--ccCChHHhCCcEE
Confidence 75 8999999997 89999999998 4799998 8999999999999999999998532 2345667899999
Q ss_pred EeCCcccccccCCCCCCceEEEEEcc-cccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHH
Q 001989 788 HLNLHKTFCIPHGGGGPGMGPIGVKK-HLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSK 866 (985)
Q Consensus 788 ~~s~hK~l~~p~g~GGPg~G~i~~~~-~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~e 866 (985)
+.|+||+++.+ |++.+|++++++ ++.+.+..... .++... .+.. +|+.+..+ +
T Consensus 207 ~~S~sK~lg~~---g~~~~G~v~~~~~~~~~~l~~~~~-------------~~g~~~-----~~~~---~~~~~~~l--~ 260 (392)
T 3qhx_A 207 LHSTTKYIGGH---SDVVGGALVTNDEELDQSFAFLQN-------------GAGAVP-----GPFD---AYLTMRGL--K 260 (392)
T ss_dssp EEETTTTTTCS---SCCCCEEEEESCHHHHHHHHHHHH-------------HHCCCC-----CHHH---HHHHHHHH--T
T ss_pred EEcCccccCCC---CCceEEEEEECcHHHHHHHHHHHH-------------hcCCCC-----CHHH---HHHHHhhh--h
Confidence 99999998521 224589998874 55443321100 001111 1111 22222322 2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCCe---eecCCCC-c-----------eeeEEEEEecCccccCC-CCHHHHHHHHHHC
Q 001989 867 GLTEASKIAILNANYMAKRLEKHYPI---LFRGVNG-T-----------VAHEFIVDLRGLKNTAG-IEPEDVAKRLMDY 930 (985)
Q Consensus 867 Gl~~~~~~~~~~a~~l~~~L~~g~~l---~~~~~~~-~-----------~~~~~iv~~~~~~~~~g-~~~~~v~~~L~~~ 930 (985)
.+....++..++++++.+.|++...+ .+++-.. + ....+.+.+++ + ...+.+.+.|...
T Consensus 261 ~l~~~~~~~~~~~~~l~~~L~~~~~v~~v~~p~l~~~~~~~~~~~~~~g~g~~~~~~l~~-----~~~~~~~~~~~l~~~ 335 (392)
T 3qhx_A 261 TLVLRMQRHSENAAAVAEFLAEHPAISTVLYPGLPSHPGHAVAARQMRGFGGMVSVRMRA-----GRTAAEQLCAKTNIF 335 (392)
T ss_dssp THHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETT-----CHHHHHHHHHHCSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCcceEECCCCCCCCCHHHHHHhCCCCceEEEEEeCC-----cHHHHHHHHHhCCCc
Confidence 34555667788888999988864332 2222100 0 01124455541 1 2345666666655
Q ss_pred CCccCC--C----CCC---------------CCCEEEEeccCCCCHHHHHH
Q 001989 931 GFHGPT--M----SWP---------------VPGTLMIEPTESESKSWTGI 960 (985)
Q Consensus 931 Gi~~~~--~----~~p---------------~~~~lris~t~~~t~eeId~ 960 (985)
|+.++. . ..| .++.||+|++..+++++|+.
T Consensus 336 ~~~~s~G~~~sl~~~~~~~~~~~~~~~~~g~~~~~iRlSvg~e~~~~~i~~ 386 (392)
T 3qhx_A 336 ILAESLGSVESLIEHPSAMTHASTAGSQLEVPDDLVRLSVGIEDVADLLDD 386 (392)
T ss_dssp EECSCCCCSSCEEECGGGTSCGGGBTTBCCCCTTEEEEECCSSCHHHHHHH
T ss_pred eECCCCCCCCceeeCcccccccccCHHHcCCCCCeEEEEeccCCHHHHHHH
Confidence 654331 0 011 14789999999999999988
|
| >1vp4_A Aminotransferase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.77 E-value=4.3e-18 Score=197.61 Aligned_cols=307 Identities=11% Similarity=0.046 Sum_probs=193.6
Q ss_pred hhHHHHHHHHHHHHHHHhCC---Cccceec-CcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcE
Q 001989 628 QGYQEMFNNLGEWLCTITGF---DSFSLQP-NAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMK 703 (985)
Q Consensus 628 ~G~~~~~~e~~~~la~l~G~---~~~~~~~-~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~ 703 (985)
+|..++.+++.+++.+.+|. +...+.. ++|++++..++. .+. .++++|+++.+.|..+...++..|++
T Consensus 85 ~g~~~lr~~la~~l~~~~g~~~~~~~~v~~t~G~~~al~~~~~---~l~-----~~gd~Vl~~~p~y~~~~~~~~~~g~~ 156 (425)
T 1vp4_A 85 EGDPVLKQQILKLLERMYGITGLDEDNLIFTVGSQQALDLIGK---LFL-----DDESYCVLDDPAYLGAINAFRQYLAN 156 (425)
T ss_dssp TCCHHHHHHHHHHHHHHHCCCSCCGGGEEEEEHHHHHHHHHHH---HHC-----CTTCEEEEEESCCHHHHHHHHTTTCE
T ss_pred CCCHHHHHHHHHHHHhccCCCCCCcccEEEeccHHHHHHHHHH---HhC-----CCCCEEEEeCCCcHHHHHHHHHcCCE
Confidence 34444455555555555484 4444444 444555544433 321 36789999888776666667788999
Q ss_pred EEEEcCCCCCCCCHHHHHHHHHhc-----CCCEEEEE-EEcC-CCcccccc--CHHHHHHHHHHcCCEEEEEccccccc-
Q 001989 704 IVSVGTDAKGNINIEELRKAAEAN-----RDNLSTLM-VTYP-STHGVYEE--GIDEICKIIHDNGGQVYMDGANMNAQ- 773 (985)
Q Consensus 704 vv~v~~d~~g~iD~e~L~~~i~~~-----~~~t~~Vv-v~~p-n~~G~i~~--di~eI~~la~~~galliVD~a~~~~~- 773 (985)
++.+|+++++ +|+++|++++++. .+++++|+ +++| |++|.+.+ ++++|.++|+++|+++++|+++....
T Consensus 157 ~~~v~~~~~~-~d~~~l~~~l~~~~~~~~~~~~~~v~~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~ 235 (425)
T 1vp4_A 157 FVVVPLEDDG-MDLNVLERKLSEFDKNGKIKQVKFIYVVSNFHNPAGVTTSLEKRKALVEIAEKYDLFIVEDDPYGALRY 235 (425)
T ss_dssp EEEEEEETTE-ECHHHHHHHHHHHHHTTCGGGEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECSSTTCBC
T ss_pred EEEeccCCCC-CCHHHHHHHHHhhhhcccCCCceEEEECCCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEECCCccccC
Confidence 9999987665 8999999999731 12788884 6777 56898862 47899999999999999999985311
Q ss_pred cCC--CCC---CccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchh
Q 001989 774 VGL--TSP---GYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWG 848 (985)
Q Consensus 774 ~~l--~~p---g~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g 848 (985)
.+- ... +..+.++++.|++|+|+ | |.++|++++++++.+.+...... . ..+.
T Consensus 236 ~g~~~~~~~~~~~~~~~i~~~s~sK~~~-~----G~r~G~~~~~~~~~~~l~~~~~~------------~--~~~~---- 292 (425)
T 1vp4_A 236 EGETVDPIFKIGGPERVVLLNTFSKVLA-P----GLRIGMVAGSKEFIRKIVQAKQS------------A--DLCS---- 292 (425)
T ss_dssp SSCCCCCHHHHHCTTTEEEEEESTTTTC-G----GGCEEEEECCHHHHHHHHHHHHH------------H--HSSC----
T ss_pred CCCCCcCHHHhCCCCCEEEEeccccccc-c----ccceEEEeeCHHHHHHHHHHhhh------------h--cCCC----
Confidence 110 011 11245788899999984 3 55689999987765543211000 0 0011
Q ss_pred hhHHHHHHHHHHHHhc-HHHHHHHHHHHHHHHHHHHHHhhcc-C---CeeecCCCCceeeEEEEEecCccccCCCCHHHH
Q 001989 849 SALILPISYTYIAMMG-SKGLTEASKIAILNANYMAKRLEKH-Y---PILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDV 923 (985)
Q Consensus 849 ~~~~~~~a~a~l~~lg-~eGl~~~~~~~~~~a~~l~~~L~~g-~---~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v 923 (985)
+.....++.++|.... .+.+++..++..++++++.+.|++. . .+.+..+.+..+ +.+.++ .+.+..++
T Consensus 293 ~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~g~~~~~~~~g~~--~~~~~~-----~~~~~~~l 365 (425)
T 1vp4_A 293 PAITHRLAARYLERYDLLEQLKPTIELYRRKRTVMLNALEEYFSDIPGVKWVKSEGGLF--IWLTLP-----EGFDTWEM 365 (425)
T ss_dssp CHHHHHHHHHHHHHSCHHHHTHHHHHHHHHHHHHHHHHHHHHSTTSTTCEECCCSBSSE--EEEECC-----TTCCTTTT
T ss_pred CHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceEEecCCccEE--EEEEcC-----CCCCHHHH
Confidence 1122223334444321 2345566666778889999998763 1 232222222222 345554 13456788
Q ss_pred HHHHHHCCCccCCC-CCC----CCCEEEEeccCCCCHHHHHHHHccCChhHHHHhhcc
Q 001989 924 AKRLMDYGFHGPTM-SWP----VPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRLKM 976 (985)
Q Consensus 924 ~~~L~~~Gi~~~~~-~~p----~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~~~ 976 (985)
.+.|.++||.+... .+. ..+++||+++.. +++||++ +++.|+++++++..
T Consensus 366 ~~~l~~~gi~v~~g~~f~~~~~~~~~iRis~~~~-~~e~i~~--~l~~l~~~l~~~~~ 420 (425)
T 1vp4_A 366 FEYAKRKKVFYVPGRVFKVYDEPSPSMRLSFCLP-PDEKIVE--GIKRLREVVLEYGK 420 (425)
T ss_dssp HHHHHHHTEECEEGGGGCTTCCCCSEEEEECSSS-CHHHHHH--HHHHHHHHHHHHHH
T ss_pred HHHHHHCCCEEECchhhcCCCCCCCeEEEEeCCC-CHHHHHH--HHHHHHHHHHHHHh
Confidence 99999999987532 221 247899999875 8999999 88899988877654
|
| >3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, csgid; 2.05A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=99.77 E-value=8.9e-17 Score=188.09 Aligned_cols=311 Identities=14% Similarity=0.168 Sum_probs=192.3
Q ss_pred HHHHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEE-cCCCCcccHHHHHHCC---------
Q 001989 632 EMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCII-PVSAHGTNPATAAMCG--------- 701 (985)
Q Consensus 632 ~~~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv-~~~~Hg~~~~~a~~~G--------- 701 (985)
+...+++++++++++.+...++.+||++|+++++++++.|....|..++++||+ ...+||.........|
T Consensus 91 ~~~~~la~~l~~~~~~~~~v~~~~ggseA~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~ 170 (452)
T 3n5m_A 91 EPAIKLAEKLNEWLGGEYVIFFSNSGSEANETAFKIARQYYAQKGEPHRYKFMSRYRGYHGNTMATMAATGQAQRRYQYE 170 (452)
T ss_dssp HHHHHHHHHHHHHHTSCEEEEEESSHHHHHHHHHHHHHHHHHTTTCTTCCEEEEETTCCCCSSHHHHHSCCCGGGTTTTC
T ss_pred HHHHHHHHHHHHhCCCCceEEEeCchHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCCHHHHhcCCchhhccccC
Confidence 345688899999998665466778999999999888887654343335677877 5567887655543222
Q ss_pred ---cEEEEEcCCCCC---CCC---------HHHHHHHHH-hcCCCEEEEEEEcC--CCccccccC----HHHHHHHHHHc
Q 001989 702 ---MKIVSVGTDAKG---NIN---------IEELRKAAE-ANRDNLSTLMVTYP--STHGVYEEG----IDEICKIIHDN 759 (985)
Q Consensus 702 ---~~vv~v~~d~~g---~iD---------~e~L~~~i~-~~~~~t~~Vvv~~p--n~~G~i~~d----i~eI~~la~~~ 759 (985)
..+..++..... ..| +++|+++++ ++++++++|+++.+ | +|.+. + +++|.++|+++
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~~vi~ep~~~n-~G~~~-~~~~~l~~l~~l~~~~ 248 (452)
T 3n5m_A 171 PFASGFLHVTPPDCYRMPGIERENIYDVECVKEVDRVMTWELSETIAAFIMEPIITG-GGILM-APQDYMKAVHETCQKH 248 (452)
T ss_dssp CCCSCEEEECCCCTTTSTTTTTSCGGGCHHHHHHHHHHHHHCGGGEEEEEECSSBTT-TTCBC-CCTTHHHHHHHHHHHH
T ss_pred CCCCCCeEeCCCccccCccCCchhhHHHHHHHHHHHHHHhcCCCCEEEEEEccccCC-CCeee-CCHHHHHHHHHHHHHc
Confidence 134455542111 123 899999997 33357888888876 7 88765 4 99999999999
Q ss_pred CCEEEEEccccccccCCCCC---C--ccCCcEEEeCCcccccccCCCCC-CceEEEEEcccccCcCCCCccccCCCCCCC
Q 001989 760 GGQVYMDGANMNAQVGLTSP---G--YIGADVCHLNLHKTFCIPHGGGG-PGMGPIGVKKHLAPFLPSHPVVSTGGIPAP 833 (985)
Q Consensus 760 galliVD~a~~~~~~~l~~p---g--~~g~Di~~~s~hK~l~~p~g~GG-Pg~G~i~~~~~l~~~lp~~~~g~~~~~~~~ 833 (985)
|++||+|++|. +++-.... . ...+|++++| |+++ +| .++|++++++++.+.+......
T Consensus 249 ~~llI~DEv~~-g~g~~g~~~~~~~~~~~~di~t~s--K~l~-----~G~~~ig~~~~~~~i~~~~~~~~~~-------- 312 (452)
T 3n5m_A 249 GALLISDEVIC-GFGRTGKAFGFMNYDVKPDIITMA--KGIT-----SAYLPLSATAVKREIYEAFKGKGEY-------- 312 (452)
T ss_dssp TCEEEEECTTT-TTTTTSSSSGGGGTTCCCSEEEEC--GGGG-----TTSSCCEEEEEEHHHHGGGCSSSTT--------
T ss_pred CCEEEEecchh-CCCcccccchhhhcCCCCCEEeec--cccc-----CCCcceEEEEECHHHHHHHhhccCC--------
Confidence 99999999874 22111111 1 1236888764 8874 36 6789999998877665320000
Q ss_pred CCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhcc---CC-ee-ecCCCCceeeEEEEE
Q 001989 834 EKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKH---YP-IL-FRGVNGTVAHEFIVD 908 (985)
Q Consensus 834 ~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~g---~~-l~-~~~~~~~~~~~~iv~ 908 (985)
+.... .+++.++++.++++.+.+..+..+++ .++..++.++++++|++. +. +. ..+ .+..+ .+.
T Consensus 313 -~~~~~---~~t~~~~~~~~aaa~aal~~~~~~~~---~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~-~g~~~---~i~ 381 (452)
T 3n5m_A 313 -EFFRH---INTFGGNPAACALALKNLEIIENENL---IERSAQMGSLLLEQLKEEIGEHPLVGDIRG-KGLLV---GIE 381 (452)
T ss_dssp -CSCCC---CCSSTTCHHHHHHHHHHHHHHHHTTH---HHHHHHHHHHHHHHHHHHHTTCTTEEEEEE-SSSCE---EEE
T ss_pred -CCccc---cCCCCCCHHHHHHHHHHHHHHHhccH---HHHHHHHHHHHHHHHHHHHhcCCCeEEEEE-EEEEE---EEE
Confidence 00000 01122345555666666776654443 345566777777777642 22 11 111 12222 222
Q ss_pred ecCccccC-CC---CHHHHHHHHHHCCCccCCCCCC---CCCEEEEeccCCCCHHHHHHHHccCChhHHHHh
Q 001989 909 LRGLKNTA-GI---EPEDVAKRLMDYGFHGPTMSWP---VPGTLMIEPTESESKSWTGIVMLSSPSEKKLHR 973 (985)
Q Consensus 909 ~~~~~~~~-g~---~~~~v~~~L~~~Gi~~~~~~~p---~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~ 973 (985)
+..-.... .. ...++.+.|.++|+.+.....+ ..+.+||+|+..+|++||++ +++.|++++++
T Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~~~~~iRi~~~~~~t~e~i~~--~l~~l~~~l~~ 451 (452)
T 3n5m_A 382 LVNDKETKEPIDNDKIASVVNACKEKGLIIGRNGMTTAGYNNILTLAPPLVISSEEIAF--VIGTLKTAMER 451 (452)
T ss_dssp EEEETTTTEECCHHHHHHHHHHHHHTTEECEECTTSSTTCCCEEEECCCTTCCHHHHHH--HHHHHHHHHTT
T ss_pred EecCCcccCCCCHHHHHHHHHHHHHCCcEEeecCcccCCCCCEEEEECCCCCCHHHHHH--HHHHHHHHHHh
Confidence 21000000 00 1357889999999987654321 24899999999999999999 77888887754
|
| >3qhx_A Cystathionine gamma-synthase METB (CGS); structural genomics, seattle structural genomics center for infectious disease, ssgcid, CGS_LIKE; HET: LLP EPE; 1.65A {Mycobacterium ulcerans} SCOP: c.67.1.0 PDB: 3qi6_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=2e-17 Score=190.10 Aligned_cols=274 Identities=16% Similarity=0.145 Sum_probs=191.6
Q ss_pred HHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCch--
Q 001989 212 SLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDLK-- 289 (985)
Q Consensus 212 ~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~~-- 289 (985)
...++++.+|+++|.+ ++.++++||+++++++.++ . ++||+|++++..|+++...+..+++..|++++.++.+
T Consensus 67 ~~~~l~~~la~~~g~~--~~~~~~sGt~A~~~al~~~-~--~~gd~Vi~~~~~y~~~~~~~~~~~~~~g~~~~~v~~~d~ 141 (392)
T 3qhx_A 67 TRTALEAALAAVEDAA--FGRAFSSGMAAADCALRAM-L--RPGDHVVIPDDAYGGTFRLIDKVFTGWNVEYTPVALADL 141 (392)
T ss_dssp HHHHHHHHHHHHTTCS--EEEEESSHHHHHHHHHHHH-C--CTTCEEEEETTCCHHHHHHHHHTGGGGTCEEEEECTTCH
T ss_pred HHHHHHHHHHHHhCCC--cEEEECCHHHHHHHHHHHH-h--CCCCEEEEeCCCcchHHHHHHHHHHhcCcEEEEeCCCCH
Confidence 3567889999999987 4778899998888777654 2 3889999999999999988877667789999999764
Q ss_pred -hhhc-cCCCEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCCCCCcccceEEEecC-ccccccCCC
Q 001989 290 -DIDY-KSGDVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKPPGELGADIVVGSA-QRFGVPMGY 365 (985)
Q Consensus 290 -~l~~-l~~~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~~~~~~GaDi~v~s~-k~lg~P~~~ 365 (985)
++++ ++++|++|++.+| |.+|.+.|+++|+++||++|+++++| +.++.+....+.++|+|+++.|. |.++++
T Consensus 142 ~~l~~~i~~~~~~v~~~~~~nptG~~~~l~~i~~la~~~g~~li~D-~~~~~~~~~~~~~~~~di~~~S~sK~lg~~--- 217 (392)
T 3qhx_A 142 DAVRAAIRPTTRLIWVETPTNPLLSIADIAGIAQLGADSSAKVLVD-NTFASPALQQPLSLGADVVLHSTTKYIGGH--- 217 (392)
T ss_dssp HHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEE-CTTTCTTTCCGGGGTCSEEEEETTTTTTCS---
T ss_pred HHHHHhhCCCCeEEEEECCCCCCcEEecHHHHHHHHHHcCCEEEEE-CCCcccccCChHHhCCcEEEEcCccccCCC---
Confidence 5556 8889999999998 78999999999999999999999995 45555666667789999999998 766532
Q ss_pred CCCcEEEEEEc-hhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcchHH
Q 001989 366 GGPHAAFLATS-QEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLK 444 (985)
Q Consensus 366 GGP~~G~l~~~-~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~ 444 (985)
|++-+|+++++ +++.+.+.. .++..+. .. .++.+. + ...+.+.+.
T Consensus 218 g~~~~G~v~~~~~~~~~~l~~-------------------------~~~~~g~--~~--~~~~~~---~--~~~~l~~l~ 263 (392)
T 3qhx_A 218 SDVVGGALVTNDEELDQSFAF-------------------------LQNGAGA--VP--GPFDAY---L--TMRGLKTLV 263 (392)
T ss_dssp SCCCCEEEEESCHHHHHHHHH-------------------------HHHHHCC--CC--CHHHHH---H--HHHHHTTHH
T ss_pred CCceEEEEEECcHHHHHHHHH-------------------------HHHhcCC--CC--CHHHHH---H--HHhhhhHHH
Confidence 22336888887 466554410 0000010 00 111111 1 111123356
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCeEEc-CC-----CC-----------cceEEEecCC----HHHHHHHHHHcCceee---
Q 001989 445 TIAQRVHGLAGTFALGLKKLGTVEVQ-GL-----PF-----------FDTVKVKCAD----AHAIASAAYKIEMNLR--- 500 (985)
Q Consensus 445 ~i~~~~~~~a~~l~~~L~~~g~~~~~-~~-----~~-----------~~~~~~~~~~----~~~v~~~L~~~GI~~~--- 500 (985)
...++..+++.++++.|++...+..+ .+ +. ...+.|.+++ +..+.+.|...|+.++
T Consensus 264 ~~~~~~~~~~~~l~~~L~~~~~v~~v~~p~l~~~~~~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~~l~~~~~~~s~G~ 343 (392)
T 3qhx_A 264 LRMQRHSENAAAVAEFLAEHPAISTVLYPGLPSHPGHAVAARQMRGFGGMVSVRMRAGRTAAEQLCAKTNIFILAESLGS 343 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETTCHHHHHHHHHHCSSSEECSCCCC
T ss_pred HHHHHHHHHHHHHHHHHhcCCCcceEECCCCCCCCCHHHHHHhCCCCceEEEEEeCCcHHHHHHHHHhCCCceECCCCCC
Confidence 66777888999999999987435432 11 11 2246676654 4555555554554321
Q ss_pred -------e--------------ecCCeEEEEeccCCCHHHHHHHHHHHh
Q 001989 501 -------V--------------VDSNTVTASFDETTTLEDVDKLFIVFA 528 (985)
Q Consensus 501 -------~--------------~~~~~lris~t~~~t~edId~li~aL~ 528 (985)
. +.++.||+|++..+++++|+.|.++|.
T Consensus 344 ~~sl~~~~~~~~~~~~~~~~~g~~~~~iRlSvg~e~~~~~i~~l~~al~ 392 (392)
T 3qhx_A 344 VESLIEHPSAMTHASTAGSQLEVPDDLVRLSVGIEDVADLLDDLKQALG 392 (392)
T ss_dssp SSCEEECGGGTSCGGGBTTBCCCCTTEEEEECCSSCHHHHHHHHHHHHC
T ss_pred CCceeeCcccccccccCHHHcCCCCCeEEEEeccCCHHHHHHHHHHHhC
Confidence 0 124679999999999999999998873
|
| >3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} SCOP: c.67.1.4 PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=8.6e-18 Score=195.62 Aligned_cols=301 Identities=13% Similarity=0.096 Sum_probs=186.7
Q ss_pred HHHHHHHHHhC--------CCccc-eecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHH-HCCcEEE
Q 001989 636 NLGEWLCTITG--------FDSFS-LQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAA-MCGMKIV 705 (985)
Q Consensus 636 e~~~~la~l~G--------~~~~~-~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~-~~G~~vv 705 (985)
++++.++++++ .+... +++++|++|+..++.++. .++++|+++.+.|+.+...+. ..|++++
T Consensus 90 ~l~~~la~~~~~~~~~~~~~~~~~v~~~~gg~~a~~~~~~~l~--------~~gd~vl~~~p~~~~~~~~~~~~~g~~~~ 161 (435)
T 3piu_A 90 AFKKAMVDFMAEIRGNKVTFDPNHLVLTAGATSANETFIFCLA--------DPGEAVLIPTPYYPGFDRDLKWRTGVEIV 161 (435)
T ss_dssp HHHHHHHHHHHHHTTTSSCCCGGGEEEEEHHHHHHHHHHHHHC--------CTTCEEEEEESCCTTHHHHTTTTTCCEEE
T ss_pred HHHHHHHHHHHHhhCCCCCCCHHHEEEcCChHHHHHHHHHHhc--------CCCCeEEECCCccccHHHHHHHhcCCEEE
Confidence 44555555554 34433 555666777755544432 367899998888887776666 7899999
Q ss_pred EEcCCCC--CCCCHHHHHHHHHhc---CCCEEEEEEEcCC-Cccccc--cCHHHHHHHHHHcCCEEEEEcccccc-ccCC
Q 001989 706 SVGTDAK--GNINIEELRKAAEAN---RDNLSTLMVTYPS-THGVYE--EGIDEICKIIHDNGGQVYMDGANMNA-QVGL 776 (985)
Q Consensus 706 ~v~~d~~--g~iD~e~L~~~i~~~---~~~t~~Vvv~~pn-~~G~i~--~di~eI~~la~~~galliVD~a~~~~-~~~l 776 (985)
.++++++ +.+|+++|+++++++ ..++++|++++|+ ++|.+. .++++|.++|+++|+++++|++|... .++-
T Consensus 162 ~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~ 241 (435)
T 3piu_A 162 PIHCTSSNGFQITETALEEAYQEAEKRNLRVKGVLVTNPSNPLGTTMTRNELYLLLSFVEDKGIHLISDEIYSGTAFSSP 241 (435)
T ss_dssp EEECCGGGTSCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCSSS
T ss_pred EeeCCCccCCcCCHHHHHHHHHHHHhcCCCeEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCC
Confidence 9998753 568999999999731 2389999999994 689885 14789999999999999999998421 1111
Q ss_pred --CCC----CccCC---------cEEEeCCcccccccCCCCCCceEEEEEc-ccccCcCCCCccccCCCCCCCCCCCCCC
Q 001989 777 --TSP----GYIGA---------DVCHLNLHKTFCIPHGGGGPGMGPIGVK-KHLAPFLPSHPVVSTGGIPAPEKSQPLG 840 (985)
Q Consensus 777 --~~p----g~~g~---------Di~~~s~hK~l~~p~g~GGPg~G~i~~~-~~l~~~lp~~~~g~~~~~~~~~~~~~~~ 840 (985)
... .+.++ ++++.++||+|+. +|.++|+++++ +.+...+... . .+.
T Consensus 242 ~~~~~~~~~~~~~~d~~~~~~~~~i~i~s~sK~~g~----~G~r~G~~~~~~~~~~~~~~~~--~------------~~~ 303 (435)
T 3piu_A 242 SFISVMEVLKDRNCDENSEVWQRVHVVYSLSKDLGL----PGFRVGAIYSNDDMVVAAATKM--S------------SFG 303 (435)
T ss_dssp CCCCHHHHHHC-------CGGGGEEEEEESSSSSCC----GGGCEEEEEESCHHHHHHHHHH--G------------GGS
T ss_pred CCcCHHHhccccccccccCCCCCEEEEEeeecccCC----CceeEEEEEeCCHHHHHHHHHH--h------------hcC
Confidence 000 01112 2788899999854 35678999985 4443332100 0 001
Q ss_pred CCCCcchhhhHHHHHHHHHHHHhc--HHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCC
Q 001989 841 TIAAAPWGSALILPISYTYIAMMG--SKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAG 917 (985)
Q Consensus 841 ~i~s~~~g~~~~~~~a~a~l~~lg--~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g 917 (985)
..+ .....++.+++.... .+.+.+..++..++++++.+.|++ ++.+. .+.+..+ +.+.++.......
T Consensus 304 ~~~------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~--~~~~g~~--~~~~l~~~~~~~~ 373 (435)
T 3piu_A 304 LVS------SQTQHLLSAMLSDKKLTKNYIAENHKRLKQRQKKLVSGLQKSGISCL--NGNAGLF--CWVDMRHLLRSNT 373 (435)
T ss_dssp CCC------HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEC--CCCSSSE--EEEECGGGSSSSS
T ss_pred CCC------HHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc--CCCeeEE--EEEEcccccccCC
Confidence 111 111112222332211 224455566778888999999986 44432 2222222 3455541100000
Q ss_pred -CCHHHHHHHHHHC-CCccCCCC-C--CCCCEEEEeccCCCCHHHHHHHHccCChhHHHHhhc
Q 001989 918 -IEPEDVAKRLMDY-GFHGPTMS-W--PVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRLK 975 (985)
Q Consensus 918 -~~~~~v~~~L~~~-Gi~~~~~~-~--p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~~ 975 (985)
.+..++.++|.++ ||.+.... + ..++++||+++.. |++||++ +++.|++++++++
T Consensus 374 ~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRi~~~~~-~~e~i~~--~l~~l~~~l~~~~ 433 (435)
T 3piu_A 374 FEAEMELWKKIVYEVHLNISPGSSCHCTEPGWFRVCFANL-PERTLDL--AMQRLKAFVGEYY 433 (435)
T ss_dssp HHHHHHHHHHHHHTSCEECEEGGGGTCSSTTEEEEECSSS-CHHHHHH--HHHHHHHHHHHHC
T ss_pred chhHHHHHHHHHHHCCEEEeCCcccCCCCCCEEEEEeeCC-CHHHHHH--HHHHHHHHHHHHh
Confidence 0345788888877 99875321 2 2358999999766 9999999 8889999887764
|
| >1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=3.9e-17 Score=187.45 Aligned_cols=303 Identities=16% Similarity=0.096 Sum_probs=195.5
Q ss_pred HHHHHHHHHHHHHhC--CCccc-eecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEc
Q 001989 632 EMFNNLGEWLCTITG--FDSFS-LQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVG 708 (985)
Q Consensus 632 ~~~~e~~~~la~l~G--~~~~~-~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~ 708 (985)
++.+++.+++.+.+| .+... ++.++|++|+..++.++. .++++|+++.+.|..+...++..|++++.+|
T Consensus 70 ~l~~~la~~l~~~~g~~~~~~~v~~t~g~~~a~~~~~~~l~--------~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~ 141 (399)
T 1c7n_A 70 EYKKTVKKWMKDRHQWDIQTDWIINTAGVVPAVFNAVREFT--------KPGDGVIIITPVYYPFFMAIKNQERKIIECE 141 (399)
T ss_dssp HHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHHHHHHHHC--------CTTCEEEECSSCCTHHHHHHHTTTCEEEECC
T ss_pred HHHHHHHHHHHHHhCCCCChhhEEEcCCHHHHHHHHHHHhc--------CCCCEEEEcCCCcHhHHHHHHHcCCEEEecc
Confidence 444555556666668 44433 455666666654444331 3678999988877777777788899999998
Q ss_pred CC-CCC--CCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccC---HHHHHHHHHHcCCEEEEEccccccc-cC--CCC
Q 001989 709 TD-AKG--NINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEG---IDEICKIIHDNGGQVYMDGANMNAQ-VG--LTS 778 (985)
Q Consensus 709 ~d-~~g--~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~d---i~eI~~la~~~galliVD~a~~~~~-~~--l~~ 778 (985)
.+ ++| .+|+++|++++++ +++++|++++| |++|.+. + +++|+++|+++|+++++|++|.... .+ ...
T Consensus 142 ~~~~~g~~~~d~~~l~~~l~~--~~~~~v~~~~~~nptG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~ 218 (399)
T 1c7n_A 142 LLEKDGYYTIDFQKLEKLSKD--KNNKALLFCSPHNPVGRVW-KKDELQKIKDIVLKSDLMLWSDEIHFDLIMPGYEHTV 218 (399)
T ss_dssp CEEETTEEECCHHHHHHHHTC--TTEEEEEEESSBTTTTBCC-CHHHHHHHHHHHHHSSCEEEEECTTTTCBCTTCCCCC
T ss_pred cccCCCCEEEcHHHHHHHhcc--CCCcEEEEcCCCCCCCcCc-CHHHHHHHHHHHHHcCCEEEEEccccccccCCCCccc
Confidence 85 333 5999999999962 57899999998 4699986 5 9999999999999999999985211 11 111
Q ss_pred CCc-----cCCcEEEeCCcccccccCCCCCCceEEEEEc-ccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHH
Q 001989 779 PGY-----IGADVCHLNLHKTFCIPHGGGGPGMGPIGVK-KHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALI 852 (985)
Q Consensus 779 pg~-----~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~-~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~ 852 (985)
... .+.++++.|++|+|+.| |.++|+++++ +++.+.+...... ..+++. +...
T Consensus 219 ~~~~~~~~~~~~i~~~s~sK~~~~~----G~r~G~~~~~~~~~~~~l~~~~~~-----------~~~~~~------~~~~ 277 (399)
T 1c7n_A 219 FQSIDEQLADKTITFTAPSKTFNIA----GMGMSNIIIKNPDIRERFTKSRDA-----------TSGMPF------TTLG 277 (399)
T ss_dssp GGGSCHHHHTTEEEEECSHHHHTCG----GGCCEEEECCCHHHHHHHHHHHHH-----------TTCCCC------CHHH
T ss_pred HHHcCccccCcEEEEEeChhhcccc----chheEEEEECCHHHHHHHHHHHhh-----------cccCCC------CHHH
Confidence 111 24568889999998543 5668999987 4455443211000 001111 1122
Q ss_pred HHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHH-HC
Q 001989 853 LPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLM-DY 930 (985)
Q Consensus 853 ~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~-~~ 930 (985)
..++.+.+.. +.+.+.+..++..++++++.+.|++ ...+....+.+..+ +.++++. .+.+..++.+.|. ++
T Consensus 278 ~~a~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~--~~~~~~~----~~~~~~~~~~~l~~~~ 350 (399)
T 1c7n_A 278 YKACEICYKE-CGKWLDGCIKVIDKNQRIVKDFFEVNHPEIKAPLIEGTYL--QWIDFRA----LKMDHKAMEEFMIHKA 350 (399)
T ss_dssp HHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHHHHHHCTTSBCCCCSBSSE--EEEECGG----GCCCHHHHHHHHHHTT
T ss_pred HHHHHHHHhC-ChHHHHHHHHHHHHHHHHHHHHHHhhCCCCeEecCCceEE--EEEEccc----CCCCHHHHHHHHHHhC
Confidence 2223334442 3556677777788889999999976 22332222222222 2356541 1356888999997 68
Q ss_pred CCccCCCC-CC--CCCEEEEeccCCCCHHHHHHHHccCChhHHHHhhccC
Q 001989 931 GFHGPTMS-WP--VPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRLKMG 977 (985)
Q Consensus 931 Gi~~~~~~-~p--~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~~~~ 977 (985)
||.+.... +. .++++||+++.. +++|++ +++.|++++++++.+
T Consensus 351 gi~v~~g~~~~~~~~~~iRis~~~~--~~~l~~--~l~~l~~~l~~~~~~ 396 (399)
T 1c7n_A 351 QIFFDEGYIFGDGGIGFERINLAAP--SSVIQE--SLERLNKALKDLKNR 396 (399)
T ss_dssp CCCCEEGGGGCGGGTTEEEEECCSC--HHHHHH--HHHHHHHHHHHHC--
T ss_pred CEEEeCccccCCCCCCeEEEEeccC--HHHHHH--HHHHHHHHHHHHHhc
Confidence 99875322 21 247999999864 789999 788999998887653
|
| >1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A {Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A* 1pg8_A* 1ukj_A* 2o7c_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=1.5e-17 Score=191.56 Aligned_cols=284 Identities=15% Similarity=0.152 Sum_probs=184.3
Q ss_pred HHHHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHH----HHCCcEEEEE
Q 001989 632 EMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATA----AMCGMKIVSV 707 (985)
Q Consensus 632 ~~~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a----~~~G~~vv~v 707 (985)
....++++.+++++|.+ ..+.+++|++|+..++.++. .++++|+++...|+.+.... ...|++++.+
T Consensus 65 ~~~~~l~~~la~~~g~~-~~i~~~sG~~a~~~~l~~~~--------~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~~ 135 (398)
T 1gc0_A 65 PTLNLLEARMASLEGGE-AGLALASGMGAITSTLWTLL--------RPGDEVLLGNTLYGCTFAFLHHGIGEFGVKLRHV 135 (398)
T ss_dssp HHHHHHHHHHHHHHTCS-EEEEESSHHHHHHHHHHHHC--------CTTCEEEEESSCCSHHHHHHHHTGGGGTCEEEEE
T ss_pred hHHHHHHHHHHHHhCCC-cEEEECCHHHHHHHHHHHHh--------cCCCEEEEeCCCchhHHHHHHHHHHHcCCEEEEE
Confidence 34678899999999987 45667788877755544431 36789999988887765543 5679999999
Q ss_pred cCCCCCCCCHHHHHHHHHhcCCCEEEEEEEcCC-CccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCccCCcE
Q 001989 708 GTDAKGNINIEELRKAAEANRDNLSTLMVTYPS-THGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIGADV 786 (985)
Q Consensus 708 ~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~pn-~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~g~Di 786 (985)
+.+ |+++|+++++ +++++|++++|+ ++|.+. |+++|+++|+++|+++|+|+++..+. +..+..+++|+
T Consensus 136 ~~~-----d~~~l~~~i~---~~~~~v~~~~~~nptG~~~-~l~~i~~l~~~~~~~li~D~~~~~~~--~~~~~~~~~d~ 204 (398)
T 1gc0_A 136 DMA-----DLQALEAAMT---PATRVIYFESPANPNMHMA-DIAGVAKIARKHGATVVVDNTYCTPY--LQRPLELGADL 204 (398)
T ss_dssp CTT-----CHHHHHHHCC---TTEEEEEEESSCTTTCCCC-CHHHHHHHHGGGTCEEEEECTTTHHH--HCCGGGGTCSE
T ss_pred CCC-----CHHHHHHhcC---CCCeEEEEECCCCCCcccc-cHHHHHHHHHHcCCEEEEECCCcccc--cCCchhhCceE
Confidence 874 8999999997 789999999985 699998 89999999999999999999985332 23455678999
Q ss_pred EEeCCcccccccCCCCCCceEEEEEcccccC-cCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcH
Q 001989 787 CHLNLHKTFCIPHGGGGPGMGPIGVKKHLAP-FLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGS 865 (985)
Q Consensus 787 ~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~-~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~ 865 (985)
++.|+||+|+.| |++-+|+++++++... .+.....+. .+... ++.. +|+.+..+
T Consensus 205 ~~~S~sK~~~~~---~~~~~G~l~~~~~~~~~~~~~~~~~~------------~~~~~-----~~~~---~~~~~~~l-- 259 (398)
T 1gc0_A 205 VVHSATKYLSGH---GDITAGIVVGSQALVDRIRLQGLKDM------------TGAVL-----SPHD---AALLMRGI-- 259 (398)
T ss_dssp EEEETTTTTTCS---SSCCCEEEEECHHHHHHHHHTHHHHH------------TCCCC-----CHHH---HHHHHHHH--
T ss_pred EEECCccccCCC---CCCeEEEEEEChHHHHHHHHHHhhcc------------CCCCC-----CHHH---HHHHHhcc--
Confidence 999999998533 2223589998865432 221110000 01111 1111 12222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCe---eecC-----------CC-CceeeEEEEEecCccccCCCCHHHHHHHHHHC
Q 001989 866 KGLTEASKIAILNANYMAKRLEKHYPI---LFRG-----------VN-GTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDY 930 (985)
Q Consensus 866 eGl~~~~~~~~~~a~~l~~~L~~g~~l---~~~~-----------~~-~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~ 930 (985)
+.+....++..++++++.+.|++...+ .+++ +. ....+.+.+.++ + ..+++.+.|.+.
T Consensus 260 ~~~~~~~~~~~~~~~~l~~~L~~~~~v~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~------~-~~~~~~~~l~~~ 332 (398)
T 1gc0_A 260 KTLNLRMDRHCANAQVLAEFLARQPQVELIHYPGLASFPQYTLARQQMSQPGGMIAFELK------G-GIGAGRRFMNAL 332 (398)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHTCTTEEEEEEC----------------CCTTEEEEEET------T-HHHHHHHHHHHC
T ss_pred chHHHHHHHHHHHHHHHHHHHhcCCCeeEEECCCCCCCcCHHHHHhhCCCCceEEEEEEC------C-CHHHHHHHHHhC
Confidence 234455566777888888888762111 1110 00 001122344443 1 234566677777
Q ss_pred CCccCCCC------------------CC--------C-CCEEEEeccCCCCHHHHHHHHccCChhH
Q 001989 931 GFHGPTMS------------------WP--------V-PGTLMIEPTESESKSWTGIVMLSSPSEK 969 (985)
Q Consensus 931 Gi~~~~~~------------------~p--------~-~~~lris~t~~~t~eeId~~~~~~~l~~ 969 (985)
|+.....+ .| + ++.+|+|+...+++++|+. +.++|++
T Consensus 333 ~i~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~g~~~~~~~i~~--l~~al~~ 396 (398)
T 1gc0_A 333 QLFSRAVSLGDAESLAQHPASMTHSSYTPEERAHYGISEGLVRLSVGLEDIDDLLAD--VQQALKA 396 (398)
T ss_dssp SSSEECSCCSCSSCEEECGGGTTTSSSCHHHHHHTTCCTTEEEEECCSSCHHHHHHH--HHHHHHH
T ss_pred CCceeccCCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEeCcCCHHHHHHH--HHHHHHh
Confidence 77642211 01 1 4799999999999999999 5555554
|
| >1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent enzymes, C-S gamma lyase; HET: PPJ; 2.18A {Trichomonas vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=3.2e-17 Score=189.22 Aligned_cols=161 Identities=19% Similarity=0.176 Sum_probs=127.2
Q ss_pred HHHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHH----HHHHCCcEEEEEc
Q 001989 633 MFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPA----TAAMCGMKIVSVG 708 (985)
Q Consensus 633 ~~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~----~a~~~G~~vv~v~ 708 (985)
..+++++.+++++|.+ ..+.+++|++|+..++.++. .++++|+++...|+.+.. .++..|++++.+|
T Consensus 63 ~~~~l~~~ia~~~g~~-~~i~~~~g~~ai~~~~~~l~--------~~gd~Vl~~~~~y~~~~~~~~~~~~~~g~~~~~v~ 133 (404)
T 1e5e_A 63 TVSNLEGKIAFLEKTE-ACVATSSGMGAIAATVLTIL--------KAGDHLISDECLYGCTHALFEHALTKFGIQVDFIN 133 (404)
T ss_dssp HHHHHHHHHHHHHTCS-EEEEESSHHHHHHHHHHHHC--------CTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEEC
T ss_pred HHHHHHHHHHHHhCCC-cEEEeCChHHHHHHHHHHHh--------CCCCEEEEeCCCchhHHHHHHHHHHHcCCEEEEEC
Confidence 3567899999999987 44666778776644444331 467899999988877666 5677899999999
Q ss_pred CCCCCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccCHHHHHHHHHH-cCCEEEEEccccccccCCCCCCccCCcE
Q 001989 709 TDAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHD-NGGQVYMDGANMNAQVGLTSPGYIGADV 786 (985)
Q Consensus 709 ~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~di~eI~~la~~-~galliVD~a~~~~~~~l~~pg~~g~Di 786 (985)
.+ |+++|+++++ ++|++|++++| |++|.+. |+++|+++|++ +|+++++|+++.... +..|..++.|+
T Consensus 134 ~~-----d~~~l~~~i~---~~t~~v~l~~p~NptG~v~-~l~~i~~la~~~~~~~li~De~~~~~~--~~~~~~~~~di 202 (404)
T 1e5e_A 134 TA-----IPGEVKKHMK---PNTKIVYFETPANPTLKII-DMERVCKDAHSQEGVLVIADNTFCSPM--ITNPVDFGVDV 202 (404)
T ss_dssp TT-----STTHHHHHCC---TTEEEEEEESSCTTTCCCC-CHHHHHHHHHTSTTCEEEEECTTTCTT--TCCGGGGTCSE
T ss_pred CC-----CHHHHHHhcC---CCCcEEEEECCCCCCCccc-CHHHHHHHHHhhcCCEEEEECCCchhh--hCCccccCCEE
Confidence 75 8899999997 78999999999 5799998 89999999999 999999999985322 22455678999
Q ss_pred EEeCCcccccccCCCCCCc-eEEEEEcccccC
Q 001989 787 CHLNLHKTFCIPHGGGGPG-MGPIGVKKHLAP 817 (985)
Q Consensus 787 ~~~s~hK~l~~p~g~GGPg-~G~i~~~~~l~~ 817 (985)
++.|+||+|+.| |.. +|++++++++..
T Consensus 203 ~~~S~sK~~~~~----g~ri~G~~~~~~~~~~ 230 (404)
T 1e5e_A 203 VVHSATKYINGH----TDVVAGLICGKADLLQ 230 (404)
T ss_dssp EEEETTTTTTCS----SCCCCEEEEECHHHHH
T ss_pred EEEcCccccCCC----CCCeEEEEEECHHHHH
Confidence 999999999543 223 499999876654
|
| >2po3_A 4-dehydrase; external aldimine, PLP, aminotransferase, TDP-sugar; HET: T4K; 2.10A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.2e-17 Score=193.63 Aligned_cols=304 Identities=15% Similarity=0.129 Sum_probs=193.8
Q ss_pred HHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcCCC-C
Q 001989 634 FNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDA-K 712 (985)
Q Consensus 634 ~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~d~-~ 712 (985)
..++++.+++++|.+. .++.++|++|+..++.++. ++++|++++..|..+...+...|++++.+++++ +
T Consensus 54 ~~~l~~~la~~~~~~~-v~~~~ggt~al~~~l~~l~---------~gd~Vlv~~~~~~~~~~~~~~~G~~~~~v~~~~~~ 123 (424)
T 2po3_A 54 VREFEERVAGLAGVRH-AVATCNATAGLQLLAHAAG---------LTGEVIMPSMTFAATPHALRWIGLTPVFADIDPDT 123 (424)
T ss_dssp HHHHHHHHHHHHTSSE-EEEESCHHHHHHHHHHHHT---------CCSEEEEESSSCTHHHHHHHHTTCEEEEECBCTTT
T ss_pred HHHHHHHHHHHhCCCe-EEEeCCHHHHHHHHHHHcC---------CCCEEEECCCccHHHHHHHHHcCCEEEEEecCCCc
Confidence 4578889999999864 3566778877755554431 458999999888888777888999999999986 6
Q ss_pred CCCCHHHHHHHHHhcCCCEEEEEEEcCCCccccccCHHHHHHHHHHcCCEEEEEccccccccCCC-CCCccCCcEEEeCC
Q 001989 713 GNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLT-SPGYIGADVCHLNL 791 (985)
Q Consensus 713 g~iD~e~L~~~i~~~~~~t~~Vvv~~pn~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~-~pg~~g~Di~~~s~ 791 (985)
+.+|+++|+++++ +++++|++++ ++|... |+++|.++|+++|+++|+|++|..+...-. ..+.+ .|+++.|+
T Consensus 124 ~~~d~~~l~~~i~---~~~~~v~~~~--~tG~~~-~l~~i~~la~~~~~~li~Dea~~~g~~~~~~~~~~~-~di~~~S~ 196 (424)
T 2po3_A 124 GNLDPDQVAAAVT---PRTSAVVGVH--LWGRPC-AADQLRKVADEHGLRLYFDAAHALGCAVDGRPAGSL-GDAEVFSF 196 (424)
T ss_dssp SSBCHHHHGGGCC---TTEEEEEEEC--GGGCCC-CHHHHHHHHHHTTCEEEEECTTCTTCEETTEETTSS-SSEEEEEC
T ss_pred CCcCHHHHHHhhC---cCCcEEEEEC--CCCCcC-CHHHHHHHHHHcCCEEEEECccccCCeECCeecccc-cCEEEEeC
Confidence 7899999999987 6899999876 579887 899999999999999999999864332101 11222 58999998
Q ss_pred cccccccCCCCCCceEEEEEc-ccccCcCCCCc-cccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHHHH
Q 001989 792 HKTFCIPHGGGGPGMGPIGVK-KHLAPFLPSHP-VVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLT 869 (985)
Q Consensus 792 hK~l~~p~g~GGPg~G~i~~~-~~l~~~lp~~~-~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl~ 869 (985)
||+.+. +|+++|+++++ +++.+.+.... .+.... +.. ......... ....++.+ +. ..++++
T Consensus 197 sk~K~l----~~~~~G~~v~~~~~l~~~l~~~~~~~~~~~---~~~--~~~g~~~~~--~~~~aa~~---l~--~~~~~~ 260 (424)
T 2po3_A 197 HATKAV----NAFEGGAVVTDDADLAARIRALHNFGFDLP---GGS--PAGGTNAKM--SEAAAAMG---LT--SLDAFP 260 (424)
T ss_dssp CTTSSS----CCSSCEEEEESCHHHHHHHHHHHBTTTTCT---TCC--TTCCCBCCC--CHHHHHHH---HH--HHHHHH
T ss_pred CCCCCc----cCCCCeEEEeCCHHHHHHHHHHHhcCcccc---ccc--cccCcCCCc--CHHHHHHH---HH--HHHHHH
Confidence 844322 34678899988 55543321100 000000 000 000000000 11111212 21 234566
Q ss_pred HHHHHHHHHHHHHHHHhhccCCeeecC-CCC--ceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCCC-CC----
Q 001989 870 EASKIAILNANYMAKRLEKHYPILFRG-VNG--TVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSW-PV---- 941 (985)
Q Consensus 870 ~~~~~~~~~a~~l~~~L~~g~~l~~~~-~~~--~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~~-p~---- 941 (985)
+..++..++++++.+.|++..++.+.. +.+ ..++.+.+.++.. ..+.+..++.+.|.++||.+..... +.
T Consensus 261 ~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~~~l~~~L~~~gI~v~~~~~~~~~~~~ 338 (424)
T 2po3_A 261 EVIDRNRRNHAAYREHLADLPGVLVADHDRHGLNNHQYVIVEIDEA--TTGIHRDLVMEVLKAEGVHTRAYFSPGCHELE 338 (424)
T ss_dssp HHHHHHHHHHHHHHHHTCSCTTEEECCGGGGSCCCCCCEEEEECHH--HHSSCHHHHHHHHHHTTEECBCTTCSCGGGST
T ss_pred HHHHHHHHHHHHHHHHhccCCCccccCCCCCCccccEEEEEEECCc--cchhhHHHHHHHHHHCCCceecccCCccccch
Confidence 667777888889999997622332222 111 1122343544300 0035688999999999998754211 10
Q ss_pred -----------------CCEEEEeccCCCCHHHHHHHHccCChhHHHHhh
Q 001989 942 -----------------PGTLMIEPTESESKSWTGIVMLSSPSEKKLHRL 974 (985)
Q Consensus 942 -----------------~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~ 974 (985)
...++++++..+|++||++ +++.|++++++.
T Consensus 339 ~~~~~g~~~~~~~~r~~~~~l~l~~~~~~t~e~i~~--~~~~L~~~~~~~ 386 (424)
T 2po3_A 339 PYRGQPHAPLPHTERLAARVLSLPTGTAIGDDDIRR--VADLLRLCATRG 386 (424)
T ss_dssp TTTTSCCCCCHHHHHHHTTEEEECCSTTCCHHHHHH--HHHHHHHHHHHH
T ss_pred hhhhcCCCCChhHHHHhcCEEEeeCCCCCCHHHHHH--HHHHHHHHHhhh
Confidence 1127888789999999999 778888887654
|
| >3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.76 E-value=5.3e-18 Score=192.89 Aligned_cols=295 Identities=13% Similarity=0.105 Sum_probs=187.3
Q ss_pred HHHHHHHHHHHHHhCC--Cccc-eecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEc
Q 001989 632 EMFNNLGEWLCTITGF--DSFS-LQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVG 708 (985)
Q Consensus 632 ~~~~e~~~~la~l~G~--~~~~-~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~ 708 (985)
++.+.+.+++.+.+|. +... ++.++|++++..++.++. .++++|+++.+.|..+...++..|++++.+|
T Consensus 62 ~lr~~la~~~~~~~~~~~~~~~i~~t~g~~~a~~~~~~~~~--------~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~ 133 (377)
T 3fdb_A 62 LLSQATAEFYADRYGYQARPEWIFPIPDVVRGLYIAIDHFT--------PAQSKVIVPTPAYPPFFHLLSATQREGIFID 133 (377)
T ss_dssp CHHHHHHHHHHHHHCCCCCGGGEEEESCHHHHHHHHHHHHS--------CTTCCEEEEESCCTHHHHHHHHHTCCEEEEE
T ss_pred HHHHHHHHHHHHHhCCCCCHHHEEEeCChHHHHHHHHHHhc--------CCCCEEEEcCCCcHhHHHHHHHcCCEEEEcc
Confidence 3444555555555553 3433 455667776654444331 3678899988878777777888899999999
Q ss_pred CCCCCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCcccccc--CHHHHHHHHHHcCCEEEEEccccccc-cCCCCCCc---
Q 001989 709 TDAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEE--GIDEICKIIHDNGGQVYMDGANMNAQ-VGLTSPGY--- 781 (985)
Q Consensus 709 ~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~--di~eI~~la~~~galliVD~a~~~~~-~~l~~pg~--- 781 (985)
++++ +|+++|+++++ +++++|++++| |++|.+.+ ++++|+++|+++|+++++|++|.... .+-..+..
T Consensus 134 ~~~~--~d~~~l~~~l~---~~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~ 208 (377)
T 3fdb_A 134 ATGG--INLHDVEKGFQ---AGARSILLCNPYNPLGMVFAPEWLNELCDLAHRYDARVLVDEIHAPLVFDGQHTVAAGVS 208 (377)
T ss_dssp CTTS--CCHHHHHHHHH---TTCCEEEEESSBTTTTBCCCHHHHHHHHHHHHHTTCEEEEECTTGGGBSSSCCCCGGGSC
T ss_pred CCCC--CCHHHHHHHhc---cCCCEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEcccchhhcCCCCCcccHHH
Confidence 9776 99999999998 67889999999 57898851 47888888999999999999985211 11001111
Q ss_pred ---cCCcEEEeCCcccccccCCCCCCceEEEEE-cccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHH
Q 001989 782 ---IGADVCHLNLHKTFCIPHGGGGPGMGPIGV-KKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISY 857 (985)
Q Consensus 782 ---~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~-~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~ 857 (985)
.+.++++.|++|+|+. +|.++|++++ ++++.+.+.... . ..+.+. +.....++.
T Consensus 209 ~~~~~~~i~~~s~sK~~g~----~G~r~G~~~~~~~~~~~~~~~~~-~-----------~~~~~~------~~~~~~a~~ 266 (377)
T 3fdb_A 209 DTAASVCITITAPSKAWNI----AGLKCAQIIFSNPSDAEHWQQLS-P-----------VIKDGA------STLGLIAAE 266 (377)
T ss_dssp HHHHHHEEEEECSTTTTTC----GGGCCEEEECCSHHHHHHHHHSC-H-----------HHHCCC------CHHHHHHHH
T ss_pred ccCCCcEEEEEeChHhccC----cchhheEEEeCCHHHHHHHHHHH-H-----------hhcCCC------CHHHHHHHH
Confidence 2234888899999854 3567897776 555544332110 0 000111 112222233
Q ss_pred HHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHC-CCccC
Q 001989 858 TYIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDY-GFHGP 935 (985)
Q Consensus 858 a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~-Gi~~~ 935 (985)
+.+.. +.+.+++..++..++++++.+.|++ ..++....+.+..+ +.++++. .+.+ .++.+.|.++ ||.+.
T Consensus 267 ~~l~~-~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~--~~~~~~~----~~~~-~~~~~~l~~~~gi~v~ 338 (377)
T 3fdb_A 267 AAYRY-GTDFLNQEVAYLKNNHDFLLHEIPKRIPGAKITPMQATYL--MWIDFRD----TTIE-GSPSEFFIEKAKVAMN 338 (377)
T ss_dssp HHHHH-CHHHHHHHHHHHHHHHHHHHHHHHHHSTTCEECCCSBCSE--EEEECTT----SCCC-SCHHHHHHHHHCEECE
T ss_pred HHHhc-cHHHHHHHHHHHHHHHHHHHHHHHhhCCCceEecCCeeEE--EEEECcc----cCCC-HHHHHHHHHhCCEEec
Confidence 44442 3455677777888899999999976 22332222222222 2366542 1233 4677777765 99875
Q ss_pred CCC-C--CCCCEEEEeccCCCCHHHHHHHHccCChhHHHHh
Q 001989 936 TMS-W--PVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHR 973 (985)
Q Consensus 936 ~~~-~--p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~ 973 (985)
... + +..+++||+++ .++++|++ +++.|++++++
T Consensus 339 ~g~~~~~~~~~~~Ris~~--~~~e~i~~--~l~~l~~~l~~ 375 (377)
T 3fdb_A 339 DGAWFGEDGTGFCRLNFA--TSREVLEE--AIDRMAKAVSH 375 (377)
T ss_dssp EGGGGCGGGTTEEEEECC--SCHHHHHH--HHHHHHHHHTT
T ss_pred CChhccCCCCCEEEEEeC--CCHHHHHH--HHHHHHHHHhh
Confidence 321 2 23589999988 38999999 77888887764
|
| >1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=1.3e-17 Score=191.65 Aligned_cols=308 Identities=15% Similarity=0.024 Sum_probs=193.6
Q ss_pred HHHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcCCCC
Q 001989 633 MFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAK 712 (985)
Q Consensus 633 ~~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~d~~ 712 (985)
...++++.+++++|.+. .++.++|++|+..++.+++ ..++++|+++...|..+...+...|++++.+|++++
T Consensus 33 ~~~~l~~~la~~~~~~~-v~~~~ggt~al~~~~~~l~-------~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~ 104 (394)
T 1o69_A 33 FVNRFEQSVKDYSKSEN-ALALNSATAALHLALRVAG-------VKQDDIVLASSFTFIASVAPICYLKAKPVFIDCDET 104 (394)
T ss_dssp HHHHHHHHHHHHHCCSE-EEEESCHHHHHHHHHHHTT-------CCTTCEEEEESSSCGGGTHHHHHTTCEEEEECBCTT
T ss_pred HHHHHHHHHHHHhCCCc-EEEeCCHHHHHHHHHHHcC-------CCCCCEEEECCCccHHHHHHHHHcCCEEEEEEeCCC
Confidence 35688999999999854 3556778877755544431 146789999999898888888889999999999877
Q ss_pred CCCCHHHHHHHHHhcCCCEEEEEEEcCCCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCC-CCc-cCCcEEEeC
Q 001989 713 GNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTS-PGY-IGADVCHLN 790 (985)
Q Consensus 713 g~iD~e~L~~~i~~~~~~t~~Vvv~~pn~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~-pg~-~g~Di~~~s 790 (985)
+.+|+++|++++++.++++++|++++ .+|... |+++|.++|+++|+++++|++|..+...... .+. .++|+.+++
T Consensus 105 ~~~d~~~l~~~i~~~~~~~~~v~~~~--~~G~~~-~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~~~~~~~s~s 181 (394)
T 1o69_A 105 YNIDVDLLKLAIKECEKKPKALILTH--LYGNAA-KMDEIVEICKENDIVLIEDAAEALGSFYKNKALGTFGEFGVYSYN 181 (394)
T ss_dssp SSBCHHHHHHHHHHCSSCCCEEEEEC--GGGCCC-CHHHHHHHHHHTTCEEEEECTTCTTCEETTEETTSSSSEEEEECC
T ss_pred CCcCHHHHHHHHhcccCCceEEEEEC--CCCChh-hHHHHHHHHHHcCCEEEEECcCcccceeCCcccccccCcEEEEEe
Confidence 89999999999983212688999987 579887 8999999999999999999998643221111 112 347888888
Q ss_pred CcccccccCCCCCCceEEEEEc-ccccCcCCC-CccccCC-CCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHH
Q 001989 791 LHKTFCIPHGGGGPGMGPIGVK-KHLAPFLPS-HPVVSTG-GIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKG 867 (985)
Q Consensus 791 ~hK~l~~p~g~GGPg~G~i~~~-~~l~~~lp~-~~~g~~~-~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eG 867 (985)
.||.+ +|+++|+++++ +++.+.+.. ...+... ...+. .+.+. +..+ ....++.+ +..+ +.
T Consensus 182 ~~K~l------~~~~~G~~~~~~~~l~~~l~~~~~~~~~~~~~~~~-~~~g~-~~~~----~~~~aa~~---l~~l--~~ 244 (394)
T 1o69_A 182 GNKII------TTSGGGMLIGKNKEKIEKARFYSTQARENCLHYEH-LDYGY-NYRL----SNVLGAIG---VAQM--EV 244 (394)
T ss_dssp TTSSS------CCSSCEEEEESCHHHHHHHHHHTBTCCCSSSSCCC-SSCCC-BCBC----CHHHHHHH---HHHH--TT
T ss_pred CCccC------CCCCceEEEECCHHHHHHHHHHHHhccccCccccc-cccCc-ccCc----CHHHHHHH---HHHH--HH
Confidence 89977 34578999996 555433210 0000000 00000 00000 0001 11111111 1111 23
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCeeecCCCC---ceeeEEEEEecCcc----------------ccCCCCHHHHHHHHH
Q 001989 868 LTEASKIAILNANYMAKRLEKHYPILFRGVNG---TVAHEFIVDLRGLK----------------NTAGIEPEDVAKRLM 928 (985)
Q Consensus 868 l~~~~~~~~~~a~~l~~~L~~g~~l~~~~~~~---~~~~~~iv~~~~~~----------------~~~g~~~~~v~~~L~ 928 (985)
+.+..++..++++++.+.|++. +...++.. +.++.+.+.++.-. ...+.+..++.+.|.
T Consensus 245 l~~~~~~~~~~~~~l~~~L~~~--~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~ 322 (394)
T 1o69_A 245 LEQRVLKKREIYEWYKEFLGEY--FSFLDELENSRSNRWLSTALINFDKNELNACQKDINISQKNITLHPKISKLIEDLK 322 (394)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTT--EECCCCCTTEECCCSSEEEEESCCGGGSCCCCEEEECCCCCCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccc--ccccCCCCCCcceeEEEEEEecchhhccccccccccccccccccccCHHHHHHHHH
Confidence 4556677788899999999764 32222111 12222445543100 000225678999999
Q ss_pred HCCCccCCCCC-----C-CC---------------CEEEEeccCCCCHHHHHHHHccCChhHHHH
Q 001989 929 DYGFHGPTMSW-----P-VP---------------GTLMIEPTESESKSWTGIVMLSSPSEKKLH 972 (985)
Q Consensus 929 ~~Gi~~~~~~~-----p-~~---------------~~lris~t~~~t~eeId~~~~~~~l~~~~~ 972 (985)
++||.+..... | .. ..+++....++|+||||+ ++++|+++++
T Consensus 323 ~~gI~v~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~edi~~--~~~~l~~~~~ 385 (394)
T 1o69_A 323 NKQIETRPLWKAMHTQEVFKGAKAYLNGNSELFFQKGICLPSGTAMSKDDVYE--ISKLILKSIK 385 (394)
T ss_dssp HTTCCCBCCCCCGGGCGGGTTCEEEECSHHHHHHHHEEEECCCTTCCHHHHHH--HHHHHHHHHC
T ss_pred HcCCcccccCCccccchhhhccCCCCChHHHHHhcCeEEccCCCCCCHHHHHH--HHHHHHHHHh
Confidence 99998764321 1 11 346666688899999999 7777777654
|
| >1jg8_A L-ALLO-threonine aldolase; glycine biosynthesis, pyridoxal-5'- phosphate, calcium binding site, structural genomics, PSI; HET: LLP; 1.80A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1lw4_A* 1lw5_A* 1m6s_A* 2fm1_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=2.8e-18 Score=192.96 Aligned_cols=288 Identities=19% Similarity=0.225 Sum_probs=183.1
Q ss_pred HHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCccc-H--HHHHHCCcEEEEEcCC
Q 001989 634 FNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTN-P--ATAAMCGMKIVSVGTD 710 (985)
Q Consensus 634 ~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~-~--~~a~~~G~~vv~v~~d 710 (985)
..++++++++++|.+.. ++.++|+++++.++.++ ..++|+|+++++.|+.. . ..+...|++++.+ .+
T Consensus 40 ~~~l~~~la~~~g~~~~-~~~~~gt~a~~~~~~~~--------~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v-~~ 109 (347)
T 1jg8_A 40 INELERLAAETFGKEAA-LFVPSGTMGNQVSIMAH--------TQRGDEVILEADSHIFWYEVGAMAVLSGVMPHPV-PG 109 (347)
T ss_dssp HHHHHHHHHHHHTCSEE-EEESCHHHHHHHHHHHH--------CCTTCEEEEETTCHHHHSSTTHHHHHTCCEEEEE-CE
T ss_pred HHHHHHHHHHHhCCceE-EEecCcHHHHHHHHHHh--------cCCCCEEEEcCcchhhhccccchhhccCeEEEEe-cC
Confidence 45788999999998754 55667877765444332 14789999998877532 1 2456789999988 55
Q ss_pred CCCCCCHHHHHHHHHhc---CCCEEEEEEEcCC-Cc-cccc--cCHHHHHHHHHHcCCEEEEEcccccc---ccCCCCCC
Q 001989 711 AKGNINIEELRKAAEAN---RDNLSTLMVTYPS-TH-GVYE--EGIDEICKIIHDNGGQVYMDGANMNA---QVGLTSPG 780 (985)
Q Consensus 711 ~~g~iD~e~L~~~i~~~---~~~t~~Vvv~~pn-~~-G~i~--~di~eI~~la~~~galliVD~a~~~~---~~~l~~pg 780 (985)
+++.+|+++|++++++. .++|++|++++|+ ++ |.+. .++++|.++|+++|+++++|++|..+ ..+. .+.
T Consensus 110 ~~~~~d~~~l~~~i~~~~~~~~~~~~v~~~~~~npt~G~~~~~~~l~~i~~~a~~~~~~li~D~a~~~~~~~~~~~-~~~ 188 (347)
T 1jg8_A 110 KNGAMDPDDVRKAIRPRNIHFPRTSLIAIENTHNRSGGRVVPLENIKEICTIAKEHGINVHIDGARIFNASIASGV-PVK 188 (347)
T ss_dssp ETTEECHHHHHHHSCCSCTTSCCEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCEEEEEETTHHHHHHHHCC-CHH
T ss_pred CCCccCHHHHHHHhccccccccCceEEEEeccccccCCccCcHHHHHHHHHHHHHCCCEEEeehhhhhcchhhcCC-ChH
Confidence 66778999999999721 1269999999995 67 9875 14689999999999999999987431 1121 122
Q ss_pred --ccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCC--CccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHH
Q 001989 781 --YIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPS--HPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPIS 856 (985)
Q Consensus 781 --~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~--~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a 856 (985)
..++|++++++||+|+ +|.+++++.++++.+.+.. ..++ ++... .......+
T Consensus 189 ~~~~~~d~~~~s~sK~l~------~~~G~~~~~~~~~~~~~~~~~~~~~--------------~~~~~----~~~~~~~~ 244 (347)
T 1jg8_A 189 EYAGYADSVMFCLSKGLC------APVGSVVVGDRDFIERARKARKMLG--------------GGMRQ----AGVLAAAG 244 (347)
T ss_dssp HHHHTCSEEEEESSSTTC------CSSCEEEEECHHHHHHHHHHHHHHT--------------CCCSS----THHHHHHH
T ss_pred HhcccccEEEEecccccC------CCceEEEEcCHHHHHHHHHHHHHcC--------------CchhH----HHHHHHHH
Confidence 1368988889999985 3322456666655433210 0000 01110 11111112
Q ss_pred HHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccC
Q 001989 857 YTYIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGP 935 (985)
Q Consensus 857 ~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~ 935 (985)
...+...- +.+ ++..++++++.+.|++ ++.+....+.+ .+ +.+.++. .+.+..++.++|.++||.+.
T Consensus 245 ~~~l~~~~-~~~----~~~~~~~~~l~~~L~~~~~~~~~~~~~~-~~--~~~~~~~----~~~~~~~~~~~l~~~gi~v~ 312 (347)
T 1jg8_A 245 IIALTKMV-DRL----KEDHENARFLALKLKEIGYSVNPEDVKT-NM--VILRTDN----LKVNAHGFIEALRNSGVLAN 312 (347)
T ss_dssp HHHHHHSS-TTH----HHHHHHHHHHHHHHHHHTCBCCGGGCCS-SE--EEEECTT----SSSCHHHHHHHHHHHTEECE
T ss_pred HHHHHHHH-HHH----HHHHHHHHHHHHHHHhcCceeccCCCcc-eE--EEEEccc----ccCCHHHHHHHHHHCCCEEe
Confidence 22233211 112 2334567888888876 44432222212 22 3455541 13568899999999999875
Q ss_pred CCCCCCCCEEEEeccCCCCHHHHHHHHccCChhHHHHh
Q 001989 936 TMSWPVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHR 973 (985)
Q Consensus 936 ~~~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~ 973 (985)
... .+.+|++++..++++|+++ +++.|++++++
T Consensus 313 ~~~---~~~iRl~~~~~~~~e~i~~--~~~~l~~~l~~ 345 (347)
T 1jg8_A 313 AVS---DTEIRLVTHKDVSRNDIEE--ALNIFEKLFRK 345 (347)
T ss_dssp EEE---TTEEEEECCTTSCHHHHHH--HHHHHHHHHHH
T ss_pred cCC---CCeEEEEeCCCCCHHHHHH--HHHHHHHHHHh
Confidence 432 3689999988999999999 78888887764
|
| >2x3l_A ORN/Lys/Arg decarboxylase family protein; lyase; HET: LLP; 2.00A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.76 E-value=6.5e-18 Score=197.52 Aligned_cols=271 Identities=13% Similarity=0.062 Sum_probs=185.7
Q ss_pred HHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc--h
Q 001989 212 SLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL--K 289 (985)
Q Consensus 212 ~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~--~ 289 (985)
.+.++++.+|+ +|.+ ..+.+++|+|.++++++.++ . ++||+|++++..|+++...+.. .|+++++++. +
T Consensus 58 ~~~~~~~~la~-~g~~-~~v~~~~G~t~a~~~~~~a~-~--~~gd~Vlv~~~~h~s~~~~~~~----~G~~~~~v~~~~~ 128 (446)
T 2x3l_A 58 VILKSMKQVEK-HSDY-DGYFLVNGTTSGILSVIQSF-S--QKKGDILMARNVHKSVLHALDI----SQQEGHFIETHQS 128 (446)
T ss_dssp HHHHHHHHHCS-CTTE-EEEEESSHHHHHHHHHHHTT-T--TSSSCEEECTTCCHHHHHHHHH----HTCCEEECEEEEC
T ss_pred HHHHHHHHHHh-cCCC-ceEEEeCCHHHHHHHHHHHh-c--CCCCEEEEecCccHHHHHHHHH----cCCeEEEEeCeec
Confidence 45678899999 9987 55777888888888777654 2 3889999999999999998864 3666666654 2
Q ss_pred h---------hhc-cCCCEeEEEEEcCCCCeeeccHHHHHHHHHhCCcEEEEEecCccccC-----CCCCCcccceEEEe
Q 001989 290 D---------IDY-KSGDVCGVLVQYPGTEGEVLDYGDFIKNAHANGVKVVMATDLLALTI-----LKPPGELGADIVVG 354 (985)
Q Consensus 290 ~---------l~~-l~~~t~~V~v~~pn~~G~v~di~~I~~~a~~~galliV~a~~~~lg~-----l~~~~~~GaDi~v~ 354 (985)
+ +++ +++++++|++++||++|.+.|+++|+++||++|+++++|. .++... .....++|+|++++
T Consensus 129 ~~~~~~~~~d~~~l~~~~~~~v~~~~~n~~G~~~~l~~I~~l~~~~~~~livDe-a~~~~~~f~~~~~~~~~~g~Di~~~ 207 (446)
T 2x3l_A 129 PLTNHYNKVNLSRLNNDGHKLVVLTYPNYYGETFNVEEVIKSLHQLNIPVLIDE-AHGAHFGLQGFPDSTLNYQADYVVQ 207 (446)
T ss_dssp TTTSSEEEEEC-------CCEEEEESSCTTSCCCCHHHHHHHHHHTTCCEEEEC-TTCTTTTSTTSCCCGGGGTCSEEEE
T ss_pred cccCcCCCCCHHHHcCCCceEEEEECCCCCeEecCHHHHHHHHHhcCCeEEEcc-hhhhhhccCCCCCChHHcCCCEEEE
Confidence 1 222 3567899999999999999999999999999999999953 333211 11234578999999
Q ss_pred cC-ccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHH
Q 001989 355 SA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAM 433 (985)
Q Consensus 355 s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~ 433 (985)
|. |++++ ++++|++++++++++ +. ++ +........+|++. ..+.++.++.
T Consensus 208 S~~K~l~~-----~~g~g~l~~~~~~i~-~~-~~-------------------~~~~~~~~~~s~~~---~~~aal~~a~ 258 (446)
T 2x3l_A 208 SFHKTLPA-----LTMGSVLYIHKNAPY-RE-NI-------------------IEYLSYFQTSSPSY---LIMASLESAA 258 (446)
T ss_dssp CHHHHSSS-----CTTCEEEEEETTCTT-HH-HH-------------------HHHHHHHSCSSCCH---HHHHHHHHHH
T ss_pred CCcccccc-----ccccEEEEEcCCcCC-HH-HH-------------------HHHHHHHcCCCchH---HHHHHHHHHH
Confidence 98 65643 345789999876543 10 00 00000112233333 2233333333
Q ss_pred HHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCCCcceEEEecCC--HHHHHHHHHHcCceeeeecCCeEEEEe
Q 001989 434 YAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDTVKVKCAD--AHAIASAAYKIEMNLRVVDSNTVTASF 511 (985)
Q Consensus 434 ~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~--~~~v~~~L~~~GI~~~~~~~~~lris~ 511 (985)
.++...|.+++.++..++++++++. | ++++.......+.+..++ +.++.+.|.++||.++....+.+|+++
T Consensus 259 --~~l~~~g~~~~~~~~~~l~~~l~~~----g-~~~~~~~~~~~l~i~~~~~~~~~l~~~L~~~GI~v~~~g~~~iRi~~ 331 (446)
T 2x3l_A 259 --QFYKTYDSTLFFAKRAQLIECLENK----G-FEMLQVDDPLKLLIKYEGFTGHDIQNWFMNAHIYLELADDYQALAIL 331 (446)
T ss_dssp --HHHHHCCCHHHHHHHHHHHHHHHHH----T-CEEEECSSTTEEEEECTTSCHHHHHHHHHHTTEEESEECSSCEEEEC
T ss_pred --HHHHHhCHHHHHHHHHHHHHHHHHc----C-CEECcCCCCeEEEEEeCCcCHHHHHHHHHHCCCEEEecCCCEEEEEe
Confidence 4444445566788888888888887 5 777632111235666654 888999999999998744457899999
Q ss_pred ccCCCHHHHHHHHHHHhC
Q 001989 512 DETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 512 t~~~t~edId~li~aL~~ 529 (985)
+.++|++|+ +++++|.+
T Consensus 332 ~~~~t~e~i-~l~~aL~~ 348 (446)
T 2x3l_A 332 PLWHHDDTY-LFDSLLRK 348 (446)
T ss_dssp CCCCTTCCC-CHHHHHHH
T ss_pred ecCCCHHHH-HHHHHHHH
Confidence 999999999 99999874
|
| >1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate COA ligase, pyridoxal phosphate, COEN transferase, structural genomics; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.4 | Back alignment and structure |
|---|
Probab=99.76 E-value=5.3e-17 Score=186.45 Aligned_cols=275 Identities=14% Similarity=0.119 Sum_probs=189.3
Q ss_pred hHHHHHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeC
Q 001989 208 GRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSD 287 (985)
Q Consensus 208 g~l~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~ 287 (985)
|..+...++++.+|+++|.+ . ..++.+||.+++.++.++ .++||+|+++...|+++...++ ..|++++.++
T Consensus 87 g~~~~~~~l~~~la~~~g~~-~-~i~~~sGs~a~~~~~~~~---~~~gd~v~~~~~~~~~~~~~~~----~~g~~~~~~~ 157 (401)
T 1fc4_A 87 GTQDSHKELEQKLAAFLGME-D-AILYSSCFDANGGLFETL---LGAEDAIISDALNHASIIDGVR----LCKAKRYRYA 157 (401)
T ss_dssp CCBHHHHHHHHHHHHHHTCS-E-EEEESCHHHHHHTTHHHH---CCTTCEEEEETTCCHHHHHHHH----TSCSEEEEEC
T ss_pred CCcHHHHHHHHHHHHHhCCC-c-EEEeCChHHHHHHHHHHH---cCCCCEEEEcchhHHHHHHHHH----HcCCceEEEC
Confidence 33456778999999999988 3 446667776666554443 2488999999999998887653 4688888875
Q ss_pred c---hhhhc-cCC------CEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCCC---------CCcc
Q 001989 288 L---KDIDY-KSG------DVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKP---------PGEL 347 (985)
Q Consensus 288 ~---~~l~~-l~~------~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~~---------~~~~ 347 (985)
. +++++ +.+ ++++|++.+| |++|.+.|+++|.++|+++|+++++| +..+.+...+ .-..
T Consensus 158 ~~d~~~l~~~l~~~~~~~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~li~D-e~~~~g~~~~~g~~~~~~~~~~~ 236 (401)
T 1fc4_A 158 NNDMQELEARLKEAREAGARHVLIATDGVFSMDGVIANLKGVCDLADKYDALVMVD-DSHAVGFVGENGRGSHEYCDVMG 236 (401)
T ss_dssp TTCHHHHHHHHHHHHHTTCSSEEEEEESEETTTTEECCHHHHHHHHHHTTEEEEEE-CTTTTTTSSTTSCCHHHHTTCTT
T ss_pred CCCHHHHHHHHHHhhccCCCceEEEEeCCcCCCCCCCCHHHHHHHHHHcCCEEEEE-CcccccccCCCCCccHHHcCCCc
Confidence 3 56665 543 7899999888 88999999999999999999999995 3444444311 1123
Q ss_pred cceEEEecC-ccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHH
Q 001989 348 GADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQAL 426 (985)
Q Consensus 348 GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l 426 (985)
++|++++|. |.|++ ++| |++++++++++.+... ...+. ..++.|. ...
T Consensus 237 ~~di~~~s~sK~~~~-----~~g-G~~~~~~~~~~~l~~~----------~~~~~------------~~~~~~~---~~~ 285 (401)
T 1fc4_A 237 RVDIITGTLGKALGG-----ASG-GYTAARKEVVEWLRQR----------SRPYL------------FSNSLAP---AIV 285 (401)
T ss_dssp CCSEEEEESSSTTCS-----SSC-EEEEECHHHHHHHHHH----------CHHHH------------HSCCCCH---HHH
T ss_pred CCcEEEecchhhccC-----CCC-EEEEcCHHHHHHHHHh----------CcCce------------eCCCCCH---HHH
Confidence 689999998 77743 233 8999998887655110 00000 0111111 222
Q ss_pred HHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCCCcceEEEecCC---HHHHHHHHHHcCceeeeec
Q 001989 427 LANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDTVKVKCAD---AHAIASAAYKIEMNLRVVD 503 (985)
Q Consensus 427 ~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~---~~~v~~~L~~~GI~~~~~~ 503 (985)
.+..+++ ..+.. .+++.++..++.+++.+.|+++| +++.. ....-+.+..++ ..++.+.|.++||.+....
T Consensus 286 ~a~~~~l--~~~~~--~~~~~~~~~~~~~~l~~~L~~~g-~~~~~-~~~~~~~~~~~~~~~~~~l~~~l~~~gi~v~~~~ 359 (401)
T 1fc4_A 286 AASIKVL--EMVEA--GSELRDRLWANARQFREQMSAAG-FTLAG-ADHAIIPVMLGDAVVAQKFARELQKEGIYVTGFF 359 (401)
T ss_dssp HHHHHHH--HHHHT--CHHHHHHHHHHHHHHHHHHHHTT-CCBCC-SSSSEEEEEEECHHHHHHHHHHHHHTTEECCEEC
T ss_pred HHHHHHH--HHHhc--CHHHHHHHHHHHHHHHHHHHHcC-CcccC-CCCCEEEEEcCChHHHHHHHHHHHHCCcEEeeec
Confidence 2222322 33211 36788888999999999999986 77663 222334455543 6789999999999876431
Q ss_pred -------CCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 504 -------SNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 504 -------~~~lris~t~~~t~edId~li~aL~~ 529 (985)
.+.+|++++..+|++|+++++++|.+
T Consensus 360 ~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~ 392 (401)
T 1fc4_A 360 YPVVPKGQARIRTQMSAAHTPEQITRAVEAFTR 392 (401)
T ss_dssp TTSSCTTCEEEEEECCTTCCHHHHHHHHHHHHH
T ss_pred CCCCCCCCceEEEEeCCCCCHHHHHHHHHHHHH
Confidence 24799999999999999999999974
|
| >2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.76 E-value=2.8e-17 Score=190.06 Aligned_cols=294 Identities=16% Similarity=0.172 Sum_probs=180.4
Q ss_pred HHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHH----HHHCCcEEEEEcC
Q 001989 634 FNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPAT----AAMCGMKIVSVGT 709 (985)
Q Consensus 634 ~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~----a~~~G~~vv~v~~ 709 (985)
.+++++++++++|.+. .++.++|++|+..++.++ ..++++|+++...|+.+... ++..|++++.++.
T Consensus 58 ~~~l~~~la~~~g~~~-~~~~~~gt~a~~~al~~l--------~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 128 (412)
T 2cb1_A 58 AKALEERLKALEGALE-AVVLASGQAATFAALLAL--------LRPGDEVVAAKGLFGQTIGLFGQVLSLMGVTVRYVDP 128 (412)
T ss_dssp HHHHHHHHHHHHTCSE-EEEESSHHHHHHHHHHTT--------CCTTCEEEEETTCCHHHHHHHHHTTTTTTCEEEEECS
T ss_pred HHHHHHHHHHHhCCCc-EEEECCHHHHHHHHHHHH--------hCCCCEEEEeCCCchhHHHHHHHHHHHcCCEEEEECC
Confidence 5688899999999874 455677887775554433 13678999998877654433 3457999999986
Q ss_pred CCCCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCccCCcEEE
Q 001989 710 DAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIGADVCH 788 (985)
Q Consensus 710 d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~g~Di~~ 788 (985)
|+++|+++++ ++|++|++++| |.+|.+. |+++|+++|+++|+++|+|++|..+ +....+..+++|+++
T Consensus 129 ------~~~~l~~~i~---~~~~~v~~~~~~n~~G~~~-~l~~i~~l~~~~~~~li~D~~~~~~-~~~~~~~~~~~di~~ 197 (412)
T 2cb1_A 129 ------EPEAVREALS---AKTRAVFVETVANPALLVP-DLEALATLAEEAGVALVVDNTFGAA-GALCRPLAWGAHVVV 197 (412)
T ss_dssp ------SHHHHHHHCC---TTEEEEEEESSCTTTCCCC-CHHHHHHHHHHHTCEEEEECGGGTT-TTSCCGGGGTCSEEE
T ss_pred ------CHHHHHHHhc---cCCeEEEEeCCCCCCcccc-cHHHHHHHHHHcCCEEEEECCCccc-cccCCccccCCeEEE
Confidence 4999999997 78999999998 4699998 8999999999999999999998533 112345567899999
Q ss_pred eCCcccccccCCCCCCceEEEEE-ccccc-----CcCCCCccccC------CCCCCCCCCCCCCCCCCcchhhhHHHHHH
Q 001989 789 LNLHKTFCIPHGGGGPGMGPIGV-KKHLA-----PFLPSHPVVST------GGIPAPEKSQPLGTIAAAPWGSALILPIS 856 (985)
Q Consensus 789 ~s~hK~l~~p~g~GGPg~G~i~~-~~~l~-----~~lp~~~~g~~------~~~~~~~~~~~~~~i~s~~~g~~~~~~~a 856 (985)
+|+||+|+.| |++ +|.+++ ++.+. ...++...|.. .+.........+.+..+. ...+.. +
T Consensus 198 ~S~~K~~~~~---~~~-~G~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~r~~~~~~~g~-~~~~~~---a 269 (412)
T 2cb1_A 198 ESLTKWASGH---GSV-LGGAVLSRETELWRNYPQFLQPDLKGQIPWEALRARCFPERVRTLGLSLCGM-ALSPFN---A 269 (412)
T ss_dssp EETTTTTTCS---SCC-CCEEEEECCCSGGGGSGGGGCC-------HHHHGGGHHHHHHHHHHTTTTCC-CCCHHH---H
T ss_pred ECCcccccCC---CCc-EEEEEEeccccccccccccccccccccchhhccchHHHHHHHHHHHHHhcCC-CCChHH---h
Confidence 9999998543 222 454444 43321 00011100100 000000000000010100 001111 2
Q ss_pred HHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc--cCCeee-cCCC------------CceeeEEEEEecCccccCCCCHH
Q 001989 857 YTYIAMMGSKGLTEASKIAILNANYMAKRLEK--HYPILF-RGVN------------GTVAHEFIVDLRGLKNTAGIEPE 921 (985)
Q Consensus 857 ~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~--g~~l~~-~~~~------------~~~~~~~iv~~~~~~~~~g~~~~ 921 (985)
|..+. +.+.+.+..++..++++++.++|.+ ++.+++ ++.. ......+.+.+ + +.+
T Consensus 270 ~~~~~--~l~~l~~~~~~~~~~~~~l~~~L~~~~~v~~v~~p~~~~~p~~~~~~~~~~~~~~iv~~~~-------~-~~~ 339 (412)
T 2cb1_A 270 YLLFQ--GLETVALRVARMSETARFLAERLQGHPKVKALRYPGLPEDPAHRNARKYLASGGPILTLDL-------G-DLE 339 (412)
T ss_dssp HHHHH--HGGGHHHHHHHHHHHHHHHHHHHHTCTTCSEEECTTSTTCTTHHHHHHHCSSSCSEEEEEC-------S-SHH
T ss_pred HHHHc--CCchHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHHhCCCCceEEEEEe-------C-CHH
Confidence 22222 2234455556667889999999986 344332 2210 01111233332 2 567
Q ss_pred HHHHHHHHCCCccCCCC---------CC-------C-----------CCEEEEeccCCCCHHHHHHHHccCChh
Q 001989 922 DVAKRLMDYGFHGPTMS---------WP-------V-----------PGTLMIEPTESESKSWTGIVMLSSPSE 968 (985)
Q Consensus 922 ~v~~~L~~~Gi~~~~~~---------~p-------~-----------~~~lris~t~~~t~eeId~~~~~~~l~ 968 (985)
++.+.|.+.||.+ ..+ .| + ++.||+|++..+++++||+ +.++|+
T Consensus 340 ~~~~~l~~~~i~~-~~s~g~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iR~s~g~~~~~~~i~~--l~~al~ 410 (412)
T 2cb1_A 340 RASRFLGAIRLLK-AANLGDARTLLVHPWTTTHSRLKEEARLQAGVTPGLVRVSVGLEDPLDLLAL--FEEALE 410 (412)
T ss_dssp HHHHHHHHCSSEE-CSCCSCSSCEEECTTTTTTTTSCHHHHHHTTCCTTEEEEECCSSCHHHHHHH--HHHHHH
T ss_pred HHHHHHHhCCeee-ecccCCCcceeecCcccccccCCHHHHHhcCCCCCeEEEEeccCCHHHHHHH--HHHHHh
Confidence 7888888889876 321 11 0 5799999999999999999 555554
|
| >1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=1.2e-17 Score=193.88 Aligned_cols=306 Identities=13% Similarity=0.119 Sum_probs=188.3
Q ss_pred hHHHHHHHHHHHHHHHhC----CCccce-ecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHH-HHCCc
Q 001989 629 GYQEMFNNLGEWLCTITG----FDSFSL-QPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATA-AMCGM 702 (985)
Q Consensus 629 G~~~~~~e~~~~la~l~G----~~~~~~-~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a-~~~G~ 702 (985)
|..++.+.+.+++.+.+| .+...+ +.+++++++..++.++. .++++|+++++.|+.+...+ ...|+
T Consensus 84 g~~~lr~~la~~~~~~~g~~~~~~~~~i~~~~G~~~ai~~~~~~~~--------~~gd~Vl~~~p~y~~~~~~~~~~~g~ 155 (428)
T 1iay_A 84 GLPEFRKAIAKFMEKTRGGRVRFDPERVVMAGGATGANETIIFCLA--------DPGDAFLVPSPYYPAFNRDLRWRTGV 155 (428)
T ss_dssp CCHHHHHHHHHHHHHHTTTCSCCCTTSCEEEEHHHHHHHHHHHHHC--------CTTCEEEEESSCCTTHHHHTTTTTCC
T ss_pred CcHHHHHHHHHHHHHhcCCCCCCChhhEEEccChHHHHHHHHHHhC--------CCCCeEEEccCCCcchHHHHHHhcCC
Confidence 444444444444444444 444444 44445556544443331 36789999988887765533 46899
Q ss_pred EEEEEcCCC--CCCCCHHHHHHHHHhc---CCCEEEEEEEcCC-CccccccC---HHHHHHHHHHcCCEEEEEcccccc-
Q 001989 703 KIVSVGTDA--KGNINIEELRKAAEAN---RDNLSTLMVTYPS-THGVYEEG---IDEICKIIHDNGGQVYMDGANMNA- 772 (985)
Q Consensus 703 ~vv~v~~d~--~g~iD~e~L~~~i~~~---~~~t~~Vvv~~pn-~~G~i~~d---i~eI~~la~~~galliVD~a~~~~- 772 (985)
+++.+|.+. ++.+|+++|++++++. .+++++|++++|+ ++|.+. + +++|.++|+++|+++++|+++...
T Consensus 156 ~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~p~nptG~~~-~~~~l~~l~~~~~~~~~~li~Dea~~~~~ 234 (428)
T 1iay_A 156 QLIPIHCESSNNFKITSKAVKEAYENAQKSNIKVKGLILTNPSNPLGTTL-DKDTLKSVLSFTNQHNIHLVCDEIYAATV 234 (428)
T ss_dssp EEEEECCCTTTTTCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCC-CHHHHHHHHHHHHTTTCEEEEECTTGGGC
T ss_pred EEEEeecCCccCCcCCHHHHHHHHHHHHhcCCceEEEEEcCCCCCCCCcC-CHHHHHHHHHHHHHCCeEEEEeccccccc
Confidence 999999864 3578999999999731 2479999999995 599987 7 999999999999999999998531
Q ss_pred ccC--CCCCCc---------cCCc--EEEeCCcccccccCCCCCCceEEEEE-cccccCcCCCCccccCCCCCCCCCCCC
Q 001989 773 QVG--LTSPGY---------IGAD--VCHLNLHKTFCIPHGGGGPGMGPIGV-KKHLAPFLPSHPVVSTGGIPAPEKSQP 838 (985)
Q Consensus 773 ~~~--l~~pg~---------~g~D--i~~~s~hK~l~~p~g~GGPg~G~i~~-~~~l~~~lp~~~~g~~~~~~~~~~~~~ 838 (985)
..+ +..... +++| +++.|+||+|+.| |.++|++++ ++++.+.+... . .
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~d~viv~~s~sK~~g~~----Glr~G~~~~~~~~~~~~~~~~--~------------~ 296 (428)
T 1iay_A 235 FDTPQFVSIAEILDEQEMTYCNKDLVHIVYSLSKDMGLP----GFRVGIIYSFNDDVVNCARKM--S------------S 296 (428)
T ss_dssp CSSSCCCCHHHHHTSGGGTTSCTTSEEEEEESTTTSSCG----GGCEEEEEESCHHHHHHHHHH--H------------T
T ss_pred cCCCCccCHHHhccccccccCCCCcEEEEecchhhcCCC----CceEEEEEeCCHHHHHHHHHH--H------------h
Confidence 111 101011 1268 8889999998543 566899998 45554433210 0 0
Q ss_pred CCCCCCcchhhhHHHHHHHHHHHHh--cHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCcccc
Q 001989 839 LGTIAAAPWGSALILPISYTYIAMM--GSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNT 915 (985)
Q Consensus 839 ~~~i~s~~~g~~~~~~~a~a~l~~l--g~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~ 915 (985)
+.+.+ .....++.+++... ..+.+++..++..++++++.+.|++ ++.+. .+.+..+ +.++++.....
T Consensus 297 ~~~~~------~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~--~~~~g~~--~~~~~~~~~~~ 366 (428)
T 1iay_A 297 FGLVS------TQTQYFLAAMLSDEKFVDNFLRESAMRLGKRHKHFTNGLEVVGIKCL--KNNAGLF--CWMDLRPLLRE 366 (428)
T ss_dssp TSCCC------HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCBC--CCSSSSE--EEEECGGGCSS
T ss_pred cccCC------HHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc--CCCeeEE--EEEechhhcCC
Confidence 01111 11112222223221 1124556666778889999999987 44432 2212222 34555410000
Q ss_pred CC-CCHHHHHHHHHHC-CCccCCCC-CC--CCCEEEEeccCCCCHHHHHHHHccCChhHHHHhh
Q 001989 916 AG-IEPEDVAKRLMDY-GFHGPTMS-WP--VPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRL 974 (985)
Q Consensus 916 ~g-~~~~~v~~~L~~~-Gi~~~~~~-~p--~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~ 974 (985)
.. ....++.++|.++ ||.+.... +. .++++||+++ ..+++|+++ +++.|++++++.
T Consensus 367 ~~~~~~~~l~~~l~~~~gi~v~~~~~~~~~~~~~iRis~~-~~~~e~i~~--~~~~l~~~l~~~ 427 (428)
T 1iay_A 367 STFDSEMSLWRVIINDVKLNVSPGSSFECQEPGWFRVCFA-NMDDGTVDI--ALARIRRFVGVE 427 (428)
T ss_dssp SSHHHHHHHHHHHHHTSCEECEEGGGGTCSSSSEEEEECS-SSCHHHHHH--HHHHHHHHHHTT
T ss_pred CchhHHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEEe-cCCHHHHHH--HHHHHHHHHhcc
Confidence 00 1245788999886 99875422 22 1478999998 689999999 778888887653
|
| >3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyrid phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=4.3e-17 Score=189.95 Aligned_cols=301 Identities=12% Similarity=0.076 Sum_probs=187.4
Q ss_pred HHHHHHHHHHHHHhCCC--ccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEE-cCCCCcccHHHHHHCCcE-----
Q 001989 632 EMFNNLGEWLCTITGFD--SFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCII-PVSAHGTNPATAAMCGMK----- 703 (985)
Q Consensus 632 ~~~~e~~~~la~l~G~~--~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv-~~~~Hg~~~~~a~~~G~~----- 703 (985)
+...+++++++++++.. ...++.++|++|+++++.+++.+. ++++||+ ...+|+.........|..
T Consensus 86 ~~~~~l~~~la~~~~~~~~~~v~~~~ggsea~~~al~~~~~~~------~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~ 159 (439)
T 3dxv_A 86 APAVTLAERLLASFPGEGTHKIWFGHSGSDANEAAYRAIVKAT------GRSGVIAFAGAYHGCTVGSMAFSGHSVQADA 159 (439)
T ss_dssp HHHHHHHHHHHHTTTCTTTEEEEEESSHHHHHHHHHHHHHHHH------SCCEEEEETTCCCCSSHHHHCC---------
T ss_pred HHHHHHHHHHHHhCCCCCCCEEEEeCCHHHHHHHHHHHHHHHh------CCCEEEEECCCCCCCcHHHHhhcCCCchhhc
Confidence 45678899999999543 345677899999988887766542 3445555 667888877665443322
Q ss_pred ---------EEEEcCCCCCCC-----CHHHHHHHHH-hcCCCEEEEEEEcCC-CccccccC----HHHHHHHHHHcCCEE
Q 001989 704 ---------IVSVGTDAKGNI-----NIEELRKAAE-ANRDNLSTLMVTYPS-THGVYEEG----IDEICKIIHDNGGQV 763 (985)
Q Consensus 704 ---------vv~v~~d~~g~i-----D~e~L~~~i~-~~~~~t~~Vvv~~pn-~~G~i~~d----i~eI~~la~~~gall 763 (985)
+..+|.+.++.. |+++|+++++ .+.+++++|+++.++ +.|.+. + +++|.++|+++|+++
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~~vi~~p~~~~~G~~~-~~~~~l~~l~~l~~~~~~~l 238 (439)
T 3dxv_A 160 AKADGLILLPYPDPYRPYRNDPTGDAILTLLTEKLAAVPAGSIGAAFIEPIQSDGGLIV-PPDGFLRKFADICRAHGILV 238 (439)
T ss_dssp ----CEEEECCCCSSSCBTTBTTSHHHHHHHHHHHHTSCTTCEEEEEECSSBSTTTSBC-CCTTHHHHHHHHHHHTTCEE
T ss_pred cccCCCCCCcEEcCCCcccccccHHHHHHHHHHHHHhcCCCCEEEEEEccccCCCCCcc-CCHHHHHHHHHHHHHcCCEE
Confidence 233454332222 7999999993 223678888887653 578776 5 999999999999999
Q ss_pred EEEccccccccCCCCC---C--ccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCC
Q 001989 764 YMDGANMNAQVGLTSP---G--YIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQP 838 (985)
Q Consensus 764 iVD~a~~~~~~~l~~p---g--~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~ 838 (985)
|+|++|. +++....+ . ...+|++++ .|+|+ +|.++|++++++++.+.+..... .
T Consensus 239 i~DE~~~-g~g~~g~~~~~~~~~~~~di~s~--sK~~~-----~G~riG~~~~~~~~~~~~~~~~~-------------~ 297 (439)
T 3dxv_A 239 VCDEVKV-GLARSGRLHCFEHEGFVPDILVL--GKGLG-----GGLPLSAVIAPAEILDCASAFAM-------------Q 297 (439)
T ss_dssp EEECTTT-CTTTTSSSSGGGGTTCCCSEEEE--CGGGG-----TTSCCEEEEEEHHHHTSCSSSSC-------------C
T ss_pred EEecccc-CCCcCchhhHHHhcCCCCCEEEE--cchhc-----CCcceEEEEECHHHHhhhcCCCc-------------C
Confidence 9999984 22211111 1 123688754 58885 35678999999887765532110 0
Q ss_pred CCCCCCcchhhhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhcc---CCee-ecCCCCceeeEEEEEec---C
Q 001989 839 LGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKH---YPIL-FRGVNGTVAHEFIVDLR---G 911 (985)
Q Consensus 839 ~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~g---~~l~-~~~~~~~~~~~~iv~~~---~ 911 (985)
.++ +++..++++.+.+..+..+. ..++..++.++++++|++. +... ...+.+.++ .+.+. .
T Consensus 298 -----~t~-~~~~~~~aa~aal~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~---~~~~~~~~~ 365 (439)
T 3dxv_A 298 -----TLH-GNPISAAAGLAVLETIDRDD---LPAMAERKGRLLRDGLSELAKRHPLIGDIRGRGLAC---GMELVCDRQ 365 (439)
T ss_dssp -----TTT-TCHHHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHHHHHHHHHHCTTEEEEEEETTEE---EEEEEEETT
T ss_pred -----CCc-ccHHHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHHHHHHHHHhCCCeEEEEEEEEEE---EEEEecCcc
Confidence 112 23444455555666554433 3445666777787777651 2221 111112222 22221 0
Q ss_pred ccccCCCCHHHHHHHHHHCCCccCCCCCCCCCEEEEeccCCCCHHHHHHHHccCChhHHHHhhc
Q 001989 912 LKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRLK 975 (985)
Q Consensus 912 ~~~~~g~~~~~v~~~L~~~Gi~~~~~~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~~ 975 (985)
.....+....++.+.|.++|+.+..... ..+.+||+++..+|++||++ +++.|+++++++.
T Consensus 366 ~~~~~~~~~~~~~~~l~~~Gv~v~~~~~-~~~~iRi~~~~~~t~e~i~~--~l~~l~~~l~~~~ 426 (439)
T 3dxv_A 366 SREPARAETAKLIYRAYQLGLVVYYVGM-NGNVLEFTPPLTITETDIHK--ALDLLDRAFSELS 426 (439)
T ss_dssp TTEECHHHHHHHHHHHHHHTEECEEEST-TSCEEEECCCTTCCHHHHHH--HHHHHHHHHHTGG
T ss_pred ccCCCHHHHHHHHHHHHHCCcEEeecCC-CCCEEEEECCCCCCHHHHHH--HHHHHHHHHHHHh
Confidence 0000112356789999999998754321 13799999999999999999 8899999888764
|
| >2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine aminotransferase (EC 2.6.1.11) (ACOA structural genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8} PDB: 2e54_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=9.7e-17 Score=184.20 Aligned_cols=287 Identities=17% Similarity=0.191 Sum_probs=190.0
Q ss_pred HHHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEE-cCCCCcccHHHHHHCCcE--------
Q 001989 633 MFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCII-PVSAHGTNPATAAMCGMK-------- 703 (985)
Q Consensus 633 ~~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv-~~~~Hg~~~~~a~~~G~~-------- 703 (985)
...++++.+++++|.+. .++.++|++|++.++.+++.+... +..++++||+ ...+|+.....+...|.+
T Consensus 83 ~~~~l~~~la~~~g~~~-v~~~~gg~~a~~~al~~~~~~~~~-~~~~~~~vi~~~~~yh~~~~~~~~~~g~~~~~~~~~p 160 (397)
T 2ord_A 83 PQMELAELLSKNTFGGK-VFFANTGTEANEAAIKIARKYGKK-KSEKKYRILSAHNSFHGRTLGSLTATGQPKYQKPFEP 160 (397)
T ss_dssp HHHHHHHHHHHTTTSCE-EEEESSHHHHHHHHHHHHHHHHHH-HCTTCCEEEEEBTCCCCSSHHHHHHSBCHHHHGGGCS
T ss_pred HHHHHHHHHHHhcCCCe-EEEeCCHHHHHHHHHHHHHHHhhc-CCCCCceEEEEcCCcCCCchhhhhccCChhhccccCC
Confidence 45678899999998643 456678888887777666543211 1112456776 456788877666666665
Q ss_pred ----EEEEcCCCCCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCcccc----ccCHHHHHHHHHHcCCEEEEEcccccccc
Q 001989 704 ----IVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVY----EEGIDEICKIIHDNGGQVYMDGANMNAQV 774 (985)
Q Consensus 704 ----vv~v~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i----~~di~eI~~la~~~galliVD~a~~~~~~ 774 (985)
++.+|.+ |+++|+++++ +++++|++++| |++|.+ + ++++|.++|+++|+++++|+++. +++
T Consensus 161 ~~~~~~~~~~~-----d~~~l~~~l~---~~~~~v~~~~~~nptG~~~~~~~-~l~~l~~l~~~~~~~li~De~~~-~~~ 230 (397)
T 2ord_A 161 LVPGFEYFEFN-----NVEDLRRKMS---EDVCAVFLEPIQGESGIVPATKE-FLEEARKLCDEYDALLVFDEVQC-GMG 230 (397)
T ss_dssp CCTTEEEECTT-----CHHHHHHHCC---TTEEEEEECSEECTTTCEECCHH-HHHHHHHHHHHHTCEEEEECTTT-TTT
T ss_pred CCCCeeEecCC-----CHHHHHHHhh---cCeEEEEEecccCCCCcccCCHH-HHHHHHHHHHHcCCEEEEEeccc-CCc
Confidence 7777763 8999999997 78999999988 578983 4 79999999999999999999984 332
Q ss_pred CCCCC---CccC--CcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhh
Q 001989 775 GLTSP---GYIG--ADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGS 849 (985)
Q Consensus 775 ~l~~p---g~~g--~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~ 849 (985)
-...+ ..++ +|++++ +|+|+ +|.++|++++++++. .+..... . .+.+. +
T Consensus 231 ~~g~~~~~~~~~~~~d~~s~--sK~~~-----~G~r~G~~~~~~~~~-~l~~~~~-------------~-~~~~~----~ 284 (397)
T 2ord_A 231 RTGKLFAYQKYGVVPDVLTT--AKGLG-----GGVPIGAVIVNERAN-VLEPGDH-------------G-TTFGG----N 284 (397)
T ss_dssp TTSSSSHHHHHTCCCSEEEE--CGGGG-----TTSCCEEEEECSTTC-CCCTTSS-------------C-CSSTT----C
T ss_pred cCccchhhhhhCCCCCeeee--ccccC-----CCcCeEEEEEchHhc-ccCCCCc-------------C-CCCCC----C
Confidence 11111 1223 788755 69985 356789999988765 4432100 0 01111 2
Q ss_pred hHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc---cCCeee-cCCCCceeeEEEEEecCccccCCCCHHHHHH
Q 001989 850 ALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK---HYPILF-RGVNGTVAHEFIVDLRGLKNTAGIEPEDVAK 925 (985)
Q Consensus 850 ~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~---g~~l~~-~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~ 925 (985)
...+.++.+.|..+..+ +..++..++++++.+.|++ ++.+.. ..+.+.+ +.+.++. +.+..++.+
T Consensus 285 ~~~~~a~~~~l~~~~~~---~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~---~~~~~~~-----~~~~~~l~~ 353 (397)
T 2ord_A 285 PLACRAGVTVIKELTKE---GFLEEVEEKGNYLMKKLQEMKEEYDVVADVRGMGLM---IGIQFRE-----EVSNREVAT 353 (397)
T ss_dssp HHHHHHHHHHHHHHTST---THHHHHHHHHHHHHHHHHHHHHHCTTEEEEEEETTE---EEEEECT-----TSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHHHHHhCCceEEEEEEeEE---EEEEECC-----hHHHHHHHH
Confidence 23334444556655433 3445677788888888875 244311 0111221 3445541 245789999
Q ss_pred HHHHCCCccCCCCCCCCCEEEEeccCCCCHHHHHHHHccCChhHHHHh
Q 001989 926 RLMDYGFHGPTMSWPVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHR 973 (985)
Q Consensus 926 ~L~~~Gi~~~~~~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~ 973 (985)
+|.++||.+.... ++.+|++++..++++|+++ +++.|++++++
T Consensus 354 ~l~~~gi~v~~~~---~~~iRis~~~~~~~e~i~~--~~~~l~~~l~~ 396 (397)
T 2ord_A 354 KCFENKLLVVPAG---NNTIRFLPPLTVEYGEIDL--AVETLKKVLQG 396 (397)
T ss_dssp HHHHTTEECEEET---TTEEEECCCTTCCHHHHHH--HHHHHHHHHHT
T ss_pred HHHHCCCEEccCC---CCEEEEECCcCCCHHHHHH--HHHHHHHHHhh
Confidence 9999999875432 4799999999999999999 77888887753
|
| >2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics, NPPSFA, national project on prote structural and functional analyses; HET: PLP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.76 E-value=5.6e-17 Score=184.37 Aligned_cols=278 Identities=15% Similarity=0.141 Sum_probs=180.6
Q ss_pred HHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCC-CEEEEcCC-CCcccHHHHHHC-------CcE-
Q 001989 634 FNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHR-NVCIIPVS-AHGTNPATAAMC-------GMK- 703 (985)
Q Consensus 634 ~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~-~~IIv~~~-~Hg~~~~~a~~~-------G~~- 703 (985)
..++++++++++|.+...++.++|++|+..++.+++.+.. ++ .++ ++|++++. +|+......... |+.
T Consensus 72 ~~~l~~~la~~~g~~~~v~~~~g~t~a~~~~~~~~~~~~~-~~-~~g~~~vl~~~~~y~~~~~~~~~~~~~~~~~~~~~~ 149 (375)
T 2eh6_A 72 QEELAHKLVKHFWTEGKVFFANSGTESVEAAIKLARKYWR-DK-GKNKWKFISFENSFHGRTYGSLSATGQPKFHKGFEP 149 (375)
T ss_dssp HHHHHHHHHHTSSSCEEEEEESSHHHHHHHHHHHHHHHHH-HT-TCCCCEEEEEBTCCCCSSHHHHHHCBCGGGTTTTCS
T ss_pred HHHHHHHHHhhcCCCCeEEEeCchHHHHHHHHHHHHHHhc-cC-CCCCCEEEEECCCcCCCchhhhhhcCCccccCCCCC
Confidence 3478899999999843345667888888766665443321 11 234 78888665 466555444332 222
Q ss_pred ----EEEEcCCCCCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccC----HHHHHHHHHHcCCEEEEEcccccccc
Q 001989 704 ----IVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEG----IDEICKIIHDNGGQVYMDGANMNAQV 774 (985)
Q Consensus 704 ----vv~v~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~d----i~eI~~la~~~galliVD~a~~~~~~ 774 (985)
+..+|. .|+++|+++++ +++++|++++| |++|.+. + +++|.++|+++|+++|+|+++. +++
T Consensus 150 ~~~~~~~~~~-----~d~~~l~~~l~---~~~~~v~~~~~~~~tG~~~-~~~~~l~~i~~~~~~~~~~li~De~~~-~~~ 219 (375)
T 2eh6_A 150 LVPGFSYAKL-----NDIDSVYKLLD---EETAGIIIEVIQGEGGVNE-ASEDFLSKLQEICKEKDVLLIIDEVQT-GIG 219 (375)
T ss_dssp CCSSEEEECT-----TCHHHHHTTCC---TTEEEEEECSEETTTTSEE-CCHHHHHHHHHHHHHHTCEEEEECTTT-TTT
T ss_pred CCCCceeCCC-----chHHHHHHHhc---CCeEEEEEeCccCCCCCcC-CCHHHHHHHHHHHHHhCCEEEEecccc-CCC
Confidence 455554 48999999987 78999999887 4689986 6 9999999999999999999985 222
Q ss_pred CCCC---CCccC--CcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhh
Q 001989 775 GLTS---PGYIG--ADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGS 849 (985)
Q Consensus 775 ~l~~---pg~~g--~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~ 849 (985)
.... ...++ +|++++| |+|+ +|.++|++++++++.+.+.....+ .+.++ +
T Consensus 220 ~~~~~~~~~~~~~~~d~~s~S--K~~~-----~g~~~G~~~~~~~~~~~~~~~~~~--------------~~~~~----~ 274 (375)
T 2eh6_A 220 RTGEFYAYQHFNLKPDVIALA--KGLG-----GGVPIGAILAREEVAQSFTPGSHG--------------STFGG----N 274 (375)
T ss_dssp TTSSSSGGGGGTCCCSEEEEC--GGGG-----TTSCCEEEEEEHHHHTTCCTTSCC--------------CSSTT----C
T ss_pred CCCcchhhhhcCCCCCEEEEc--cccc-----CCCCeEEEEEcHHHHhhhcCCCCC--------------CCCCC----C
Confidence 1111 12345 8998766 9885 357899999988776655432111 01111 1
Q ss_pred hHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHH
Q 001989 850 ALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLM 928 (985)
Q Consensus 850 ~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~ 928 (985)
.....++.+.|..+. +..++..++++++.+.|++ +... ..+ .+. .+.+.++ .+..++.+.|.
T Consensus 275 ~~~~~~~~~~l~~~~-----~~~~~~~~~~~~l~~~L~~~~~~~-~~~-~g~---~~~~~~~-------~~~~~~~~~l~ 337 (375)
T 2eh6_A 275 PLACRAGTVVVDEVE-----KLLPHVREVGNYFKEKLKELGKGK-VKG-RGL---MLGLELE-------RECKDYVLKAL 337 (375)
T ss_dssp HHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHTTSSE-EEE-ETT---EEEEECS-------SCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHhcCC-ceE-EEE---EEEEEEc-------CcHHHHHHHHH
Confidence 222233334444332 4455677888999999976 2222 111 111 1345543 14578999999
Q ss_pred HCCCccCCCCCCCCCEEEEeccCCCCHHHHHHHHccCChhHH
Q 001989 929 DYGFHGPTMSWPVPGTLMIEPTESESKSWTGIVMLSSPSEKK 970 (985)
Q Consensus 929 ~~Gi~~~~~~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~ 970 (985)
++||.+.... ++.+|++++..++++|+++ +++.|+++
T Consensus 338 ~~gi~~~~~~---~~~iRi~~~~~~~~~~i~~--~~~~l~~~ 374 (375)
T 2eh6_A 338 EKGLLINCTA---GKVLRFLPPLIIQKEHIDR--AISVLREI 374 (375)
T ss_dssp HTTEECEEET---TTEEEECCCTTCCHHHHHH--HHHHHHHH
T ss_pred HCCCEEecCC---CCEEEEECCCCCCHHHHHH--HHHHHHHh
Confidence 9999875332 4799999999999999999 66766654
|
| >1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold type I, subclass II, homodimer; HET: LLP; 1.71A {Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A* 1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A* 1dty_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=8.4e-17 Score=186.89 Aligned_cols=302 Identities=14% Similarity=0.136 Sum_probs=190.5
Q ss_pred HHHHHHHHHHHhCCCcc-ceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcC-CCCcccHHHHHHCC----------
Q 001989 634 FNNLGEWLCTITGFDSF-SLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPV-SAHGTNPATAAMCG---------- 701 (985)
Q Consensus 634 ~~e~~~~la~l~G~~~~-~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~-~~Hg~~~~~a~~~G---------- 701 (985)
..++++.++++++.+.. .++.++|++|++.++.+++.+...+| .++++||+++ .+|+.........|
T Consensus 88 ~~~l~~~la~~~~~~~~~v~~~~ggtea~~~ai~~~~~~~~~~g-~~~~~vi~~~~~yh~~~~~~~~~~~~~~~~~~~~~ 166 (429)
T 1s0a_A 88 AIELCRKLVAMTPQPLECVFLADSGSVAVEVAMKMALQYWQAKG-EARQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWK 166 (429)
T ss_dssp HHHHHHHHHHHSCTTCCEEEEESSHHHHHHHHHHHHHHHHHHHT-CCCCEEEEETTCCCCSSHHHHTTSCTTTTTGGGGT
T ss_pred HHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHHHhcccC-CCCCeEEEECCCCCCCchhhhhhcCCchhhccccc
Confidence 45777889999976543 45668888888777776665433333 2577888866 57876654443222
Q ss_pred ---cEEEEEcCCC------CCCCCHHHHHHHHHhcCCCEEEEEEEcC--CCccccccC----HHHHHHHHHHcCCEEEEE
Q 001989 702 ---MKIVSVGTDA------KGNINIEELRKAAEANRDNLSTLMVTYP--STHGVYEEG----IDEICKIIHDNGGQVYMD 766 (985)
Q Consensus 702 ---~~vv~v~~d~------~g~iD~e~L~~~i~~~~~~t~~Vvv~~p--n~~G~i~~d----i~eI~~la~~~galliVD 766 (985)
..++.++++. .+.+|+++|+++++++++++++|+++.+ |.+|.+. + +++|.++|+++|+++|+|
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~vi~~p~~~n~tG~~~-~~~~~l~~i~~l~~~~~~~li~D 245 (429)
T 1s0a_A 167 GYLPENLFAPAPQSRMDGEWDERDMVGFARLMAAHRHEIAAVIIEPIVQGAGGMRM-YHPEWLKRIRKICDREGILLIAD 245 (429)
T ss_dssp TTSCCCEEECCCCSBC-CCCCGGGGHHHHHHHHHHTTTEEEEEECSSEECTTTCEE-BCTHHHHHHHHHHHHHTCEEEEE
T ss_pred CCCCCceEeCCCcccccccchHHHHHHHHHHHHhCCCCEEEEEEeecccCCCCccc-CCHHHHHHHHHHHHHcCCEEEEe
Confidence 1344555532 2468999999999754357777766544 3589765 5 999999999999999999
Q ss_pred ccccccccCCCCC-----CccCCcEEEeCCcccccccCCCCC-CceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCC
Q 001989 767 GANMNAQVGLTSP-----GYIGADVCHLNLHKTFCIPHGGGG-PGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLG 840 (985)
Q Consensus 767 ~a~~~~~~~l~~p-----g~~g~Di~~~s~hK~l~~p~g~GG-Pg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~ 840 (985)
++|. +++..... ....+|++++| |+|+ || .++|++++++++.+.+.... . . .. ....
T Consensus 246 e~~~-~~g~~g~~~~~~~~~~~~d~~t~s--K~l~-----~G~~~iG~~~~~~~~~~~l~~~~--~-~---~~-~~~~-- 308 (429)
T 1s0a_A 246 EIAT-GFGRTGKLFACEHAEIAPDILCLG--KALT-----GGTMTLSATLTTREVAETISNGE--A-G---CF-MHGP-- 308 (429)
T ss_dssp CTTT-TTTTTSSSSGGGGGTCCCSEEEEC--GGGG-----TSSSCCEEEEECHHHHHHHHTST--T-S---SC-SCCC--
T ss_pred ehhh-CCcccchHHHhhhcCCCCCEEEec--cccc-----CCCccceEEEeCHHHHHHhhcCC--C-c---cc-ccCC--
Confidence 9984 22211111 12347888664 8874 45 67899999877654432110 0 0 00 0001
Q ss_pred CCCCcchhhhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhcc--C-Cee-ecCCCCceeeEEEEEecCccccC
Q 001989 841 TIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKH--Y-PIL-FRGVNGTVAHEFIVDLRGLKNTA 916 (985)
Q Consensus 841 ~i~s~~~g~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~g--~-~l~-~~~~~~~~~~~~iv~~~~~~~~~ 916 (985)
+. .+++..++++.+.+..+..++ ..++..++++++.++|++. + .+. ..+ .+. + +.++++.
T Consensus 309 t~----~~n~~~~~a~~aal~~~~~~~---~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~-~g~-~--~~~~~~~----- 372 (429)
T 1s0a_A 309 TF----MGNPLACAAANASLAILESGD---WQQQVADIEVQLREQLAPARDAEMVADVRV-LGA-I--GVVETTH----- 372 (429)
T ss_dssp TT----TTCHHHHHHHHHHHHHHHTCH---HHHHHHHHHHHHHHHHGGGGGCTTEEEEEE-ETT-E--EEEEESS-----
T ss_pred CC----CCCHHHHHHHHHHHHHHHhCC---HHHHHHHHHHHHHHHHHHHhcCCCEEEEEE-eeE-E--EEEEECC-----
Confidence 11 123333444455555543333 3456667788999998762 1 221 111 111 1 3445541
Q ss_pred CCCHHHHHHHHHHCCCccCCCCCCCCCEEEEeccCCCCHHHHHHHHccCChhHHHHhhcc
Q 001989 917 GIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRLKM 976 (985)
Q Consensus 917 g~~~~~v~~~L~~~Gi~~~~~~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~~~ 976 (985)
+.+..++.+.|.++||.+... .+.+||+++..+|++|+++ +++.|++++++++.
T Consensus 373 ~~~~~~l~~~l~~~Gi~v~~~----~~~iRis~~~~~t~e~i~~--~~~~l~~~~~~~~~ 426 (429)
T 1s0a_A 373 PVNMAALQKFFVEQGVWIRPF----GKLIYLMPPYIILPQQLQR--LTAAVNRAVQDETF 426 (429)
T ss_dssp CBCHHHHHHHHHHTTEECCCB----TTEEEECCCTTCCHHHHHH--HHHHHHHHTSSGGG
T ss_pred cccHHHHHHHHHHCCCEEecc----CCEEEEECCCCCCHHHHHH--HHHHHHHHHHhhhc
Confidence 246788999999999988543 3799999999999999999 78888888766554
|
| >3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, biotin biosynthesis, pyridoxal phosphate, adenosyl-L-methionine; HET: PLP; 1.90A {Bacillus subtilis} SCOP: c.67.1.0 PDB: 3drd_A 3du4_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=7.2e-17 Score=188.74 Aligned_cols=315 Identities=12% Similarity=0.073 Sum_probs=184.6
Q ss_pred HHHHHHHHHHHHHhCCCc-cceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEc-CCCCcccHHHHHHCC--------
Q 001989 632 EMFNNLGEWLCTITGFDS-FSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIP-VSAHGTNPATAAMCG-------- 701 (985)
Q Consensus 632 ~~~~e~~~~la~l~G~~~-~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~-~~~Hg~~~~~a~~~G-------- 701 (985)
+...+++++++++++.+. ..++.+||++|+++++++++.++...|..++++||+. ..+||.........|
T Consensus 87 ~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~al~~~~~~~~~~G~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~ 166 (448)
T 3dod_A 87 VPATQLAETLIDISPKKLTRVFYSDSGAEAMEIALKMAFQYWKNIGKPEKQKFIAMKNGYHGDTIGAVSVGSIELFHHVY 166 (448)
T ss_dssp HHHHHHHHHHHHHSCTTEEEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEEC-----------------------
T ss_pred HHHHHHHHHHHHhCCCCCCEEEEeCchHHHHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCccHHHHHhcCCccccccc
Confidence 345678899999986543 3467789999999999888876544443346888874 456775543322211
Q ss_pred ----cEEEEEcCCCCCCC-----------CHHHHHHHHHhcCCCEEEEEEEcC--CCccccccC---HHHHHHHHHHcCC
Q 001989 702 ----MKIVSVGTDAKGNI-----------NIEELRKAAEANRDNLSTLMVTYP--STHGVYEEG---IDEICKIIHDNGG 761 (985)
Q Consensus 702 ----~~vv~v~~d~~g~i-----------D~e~L~~~i~~~~~~t~~Vvv~~p--n~~G~i~~d---i~eI~~la~~~ga 761 (985)
..+..+|.+...+. |+++|+++|+++.+++++|+++.+ +..|.+.++ +++|.++|+++|+
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~~G~~~~~~~~l~~l~~l~~~~~~ 246 (448)
T 3dod_A 167 GPLMFESYKAPIPYVYRSESGDPDECRDQCLRELAQLLEEHHEEIAALSIESMVQGASGMIVMPEGYLAGVRELCTTYDV 246 (448)
T ss_dssp ------CEEECCCCCTTSSSCCHHHHHHHHHHHHHHHHHHHGGGEEEEEEESSEESTTTCEECCTTHHHHHHHHHHHTTC
T ss_pred cCCCCCceEeCCCccccCCccchhhhhHHHHHHHHHHHHhCCCCEEEEEEeCcccCCCCeecCCHHHHHHHHHHHHHhCC
Confidence 23445555432222 489999999744457888887765 456766412 9999999999999
Q ss_pred EEEEEccccccccCCCCC---C--ccCCcEEEeCCcccccccCCCCCC-ceEEEEEcccccCcCCCCccccCCCCCCCCC
Q 001989 762 QVYMDGANMNAQVGLTSP---G--YIGADVCHLNLHKTFCIPHGGGGP-GMGPIGVKKHLAPFLPSHPVVSTGGIPAPEK 835 (985)
Q Consensus 762 lliVD~a~~~~~~~l~~p---g--~~g~Di~~~s~hK~l~~p~g~GGP-g~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~ 835 (985)
++|+|++|. +++-.... . ...+|++++| |+|+ +|. .+|++++++++.+.+....... +
T Consensus 247 ~lI~DEv~~-g~g~~g~~~a~~~~~~~~di~t~s--K~l~-----~G~~~ig~v~~~~~~~~~~~~~~~~~--------~ 310 (448)
T 3dod_A 247 LMIVDEVAT-GFGRTGKMFACEHENVQPDLMAAG--KGIT-----GGYLPIAVTFATEDIYKAFYDDYENL--------K 310 (448)
T ss_dssp EEEEECTTT-TTTTTSSSSGGGGGTCCCSEEEEC--GGGG-----TTSSCCEEEEEEHHHHHTTCSCGGGC--------C
T ss_pred EEEEecccc-CCCcccchhhhhhcCCCCCEEEec--cccc-----CCcCceEEEEECHHHHHHhhhccccC--------C
Confidence 999999874 22211111 1 1236888764 8874 353 7888998988776553210000 0
Q ss_pred CCCCCCCCCcchhhhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc--cCCeee-cCCCCceeeEEEEEecCc
Q 001989 836 SQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK--HYPILF-RGVNGTVAHEFIVDLRGL 912 (985)
Q Consensus 836 ~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~--g~~l~~-~~~~~~~~~~~iv~~~~~ 912 (985)
.. ...+++.++++.++++.+.|..+..+++ .++..++.++++++|++ .+.... ....+.+ +.+.+..-
T Consensus 311 --~~-~~~~t~~~~~~~~aaa~aal~~~~~~~~---~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~g~~---~~~~~~~~ 381 (448)
T 3dod_A 311 --TF-FHGHSYTGNQLGCAVALENLALFESENI---VEQVAEKSKKLHFLLQDLHALPHVGDIRQLGFM---CGAELVRS 381 (448)
T ss_dssp --CC-CCCCTTTTCHHHHHHHHHHHHHHHHTTH---HHHHHHHHHHHHHHHHHHTTSTTEEEEEEETTE---EEEEECSB
T ss_pred --cc-cccCCCCcCHHHHHHHHHHHHHHhcccH---HHHHHHHHHHHHHHHHHHhcCCCeEEEEeeeEE---EEEEEccC
Confidence 00 0001122345555666667766544443 34555666777777764 222111 1001222 23343210
Q ss_pred ccc-CC----C-CHHHHHHHHHHCCCccCCCCCCCCCEEEEeccCCCCHHHHHHHHccCChhHHHHhhccC
Q 001989 913 KNT-AG----I-EPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRLKMG 977 (985)
Q Consensus 913 ~~~-~g----~-~~~~v~~~L~~~Gi~~~~~~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~~~~ 977 (985)
... .. . ...++++.|.++|+.+... .+.+||+|+..+|++||++ +++.|+++++++...
T Consensus 382 ~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~----~~~iRi~~~~~~t~e~i~~--~l~~l~~~l~~~~~~ 446 (448)
T 3dod_A 382 KETKEPYPADRRIGYKVSLKMRELGMLTRPL----GDVIAFLPPLASTAEELSE--MVAIMKQAIHEVTSL 446 (448)
T ss_dssp TTTTBCCCGGGCHHHHHHHHHHHTTEECCEE----TTEEEECCCTTCCHHHHHH--HHHHHHHHHHHHHTT
T ss_pred cccccccchhhHHHHHHHHHHHHCCcEEecc----CCEEEEECCCCCCHHHHHH--HHHHHHHHHHHHhcc
Confidence 000 00 0 0468999999999987533 3799999999999999999 889999998876543
|
| >2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, aminotransf mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=3.5e-17 Score=189.92 Aligned_cols=305 Identities=11% Similarity=0.061 Sum_probs=194.6
Q ss_pred hhhHHHHHHHHHHHHHHHhCCCc---------cce-ecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHH
Q 001989 627 AQGYQEMFNNLGEWLCTITGFDS---------FSL-QPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPAT 696 (985)
Q Consensus 627 ~~G~~~~~~e~~~~la~l~G~~~---------~~~-~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~ 696 (985)
.+|..++.+++.+++++.+|.+. ..+ +.+++++|+..++.++. .++++|+++++.|..+...
T Consensus 77 ~~G~~~lr~~ia~~l~~~~g~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~--------~~gd~Vlv~~p~y~~~~~~ 148 (425)
T 2r2n_A 77 SAGIPELLSWLKQLQIKLHNPPTIHYPPSQGQMDLCVTSGSQQGLCKVFEMII--------NPGDNVLLDEPAYSGTLQS 148 (425)
T ss_dssp TTCCHHHHHHHHHHHHHHHCCTTTTSCGGGTCEEEEEESSHHHHHHHHHHHHC--------CTTCEEEEESSCCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCccccccCCcCcEEEeCcHHHHHHHHHHHhC--------CCCCEEEEeCCCcHHHHHH
Confidence 36777788888888888888764 244 44555556644433321 4678999998877776677
Q ss_pred HHHCCcEEEEEcCCCCCCCCHHHHHHHHHhcC---------CCEEEEEE-EcC-CCcccccc--CHHHHHHHHHHcCCEE
Q 001989 697 AAMCGMKIVSVGTDAKGNINIEELRKAAEANR---------DNLSTLMV-TYP-STHGVYEE--GIDEICKIIHDNGGQV 763 (985)
Q Consensus 697 a~~~G~~vv~v~~d~~g~iD~e~L~~~i~~~~---------~~t~~Vvv-~~p-n~~G~i~~--di~eI~~la~~~gall 763 (985)
++..|++++.+|++++| +|+++|++++++.+ +++++|++ .+| |++|.+.+ ++++|.++|+++|+++
T Consensus 149 ~~~~g~~~~~v~~~~~~-~d~~~l~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~a~~~~~~l 227 (425)
T 2r2n_A 149 LHPLGCNIINVASDESG-IVPDSLRDILSRWKPEDAKNPQKNTPKFLYTVPNGNNPTGNSLTSERKKEIYELARKYDFLI 227 (425)
T ss_dssp HGGGTCEEEEECEETTE-ECHHHHHHHHTTSCSTTSSSTTSCCCSEEEECCSSCTTTCCCCCHHHHHHHHHHHHHTTCEE
T ss_pred HHHcCCEEEEeCcCCCC-CCHHHHHHHHHhhhccccccccCCCceEEEECCCCcCCCCCcCCHHHHHHHHHHHHHcCCEE
Confidence 78899999999987654 89999999997321 45777766 466 57898861 3559999999999999
Q ss_pred EEEcccccc-ccCC--CCC---CccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCC
Q 001989 764 YMDGANMNA-QVGL--TSP---GYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQ 837 (985)
Q Consensus 764 iVD~a~~~~-~~~l--~~p---g~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~ 837 (985)
++|+++... ..+- ... ...+.++++.|++|+|+ | |.++|++++++++.+.+.... . .
T Consensus 228 i~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~SK~~~-~----GlRiG~~~~~~~l~~~l~~~~-~-----------~ 290 (425)
T 2r2n_A 228 IEDDPYYFLQFNKFRVPTFLSMDVDGRVIRADSFSKIIS-S----GLRIGFLTGPKPLIERVILHI-Q-----------V 290 (425)
T ss_dssp EEECTTGGGBSSSSCCCCTGGGCTTSCEEEEEESTTTTC-S----TTCCEEEEEEHHHHHHHHHHH-H-----------T
T ss_pred EEECCcccccCCCCCCCCccccCCCCCEEEEccchhhcc-C----ccceEEEecCHHHHHHHHHHH-H-----------H
Confidence 999998521 1111 011 12234688899999984 3 567899999877654432110 0 0
Q ss_pred CCCCCCCcchhhhHHHHHHHHHHHHhcHH----HHHHHHHHHHHHHHHHHHHhhcc-CCe-eecCCCCceeeEEEEEecC
Q 001989 838 PLGTIAAAPWGSALILPISYTYIAMMGSK----GLTEASKIAILNANYMAKRLEKH-YPI-LFRGVNGTVAHEFIVDLRG 911 (985)
Q Consensus 838 ~~~~i~s~~~g~~~~~~~a~a~l~~lg~e----Gl~~~~~~~~~~a~~l~~~L~~g-~~l-~~~~~~~~~~~~~iv~~~~ 911 (985)
.+.+. + .....++.++|..++.+ .+++..++..++++++.+.|++. .++ .+..+.+..+ +.++++.
T Consensus 291 ~~~~~--~----~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~p~~g~~--~~~~~~~ 362 (425)
T 2r2n_A 291 STLHP--S----TFNQLMISQLLHEWGEEGFMAHVDRVIDFYSNQKDAILAAADKWLTGLAEWHVPAAGMF--LWIKVKG 362 (425)
T ss_dssp TTCSS--C----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSEEECCCSBSSE--EEEEETT
T ss_pred hcCCC--C----HHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCeEEeCCCceEE--EEEEeCC
Confidence 01111 1 12222333455544322 24444555677788888888762 232 1222223322 3456542
Q ss_pred ccccCCCCHHH-HHHHHHHCCCccCCC-CCC-----CCCEEEEeccCCCCHHHHHHHHccCChhHHHHh
Q 001989 912 LKNTAGIEPED-VAKRLMDYGFHGPTM-SWP-----VPGTLMIEPTESESKSWTGIVMLSSPSEKKLHR 973 (985)
Q Consensus 912 ~~~~~g~~~~~-v~~~L~~~Gi~~~~~-~~p-----~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~ 973 (985)
+.+..+ +.+.|.++||.+... .+. ..+++||+++. .+++||++ +++.|++++++
T Consensus 363 -----~~~~~~~~~~~l~~~gv~v~pg~~f~~~~~~~~~~iRis~~~-~~~~~i~~--~~~~l~~~l~~ 423 (425)
T 2r2n_A 363 -----INDVKELIEEKAVKMGVLMLPGNAFYVDSSAPSPYLRASFSS-ASPEQMDV--AFQVLAQLIKE 423 (425)
T ss_dssp -----CSCCHHHHHTHHHHTTEECEEGGGGSSSTTSCCCEEEEECSS-CCHHHHHH--HHHHHHHHHHH
T ss_pred -----CCCHHHHHHHHHHHCCcEEechhhhcCCCCCCCCEEEEEeCC-CCHHHHHH--HHHHHHHHHHH
Confidence 234445 688899999987532 121 13789999984 59999999 77888887764
|
| >4ao9_A Beta-phenylalanine aminotransferase; HET: PLP; 1.50A {Variovorax paradoxus} PDB: 4aoa_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=1e-17 Score=194.55 Aligned_cols=324 Identities=10% Similarity=0.107 Sum_probs=202.4
Q ss_pred cccccccccCCCccccccccccccccccCCCCchhhhhhHHHHHHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHH
Q 001989 591 MIPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRA 670 (985)
Q Consensus 591 ~~~lG~~t~~~~~~~~~~~~~~~~f~~~~p~~p~e~~~G~~~~~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~ 670 (985)
...||++++.+..+...+......+...+++ ..++.+.+++++......++++||++|++++++++|.
T Consensus 98 ~~~lGH~hp~v~~Av~~q~~~~~~~~~~~~~------------~~~lae~l~~~~p~~~~v~f~~SGsEA~e~AiklAr~ 165 (454)
T 4ao9_A 98 AGVYGHSAPEIRDAVIEAMQGGINLTGHNLL------------EGRLARLICERFPQIEQLRFTNSGTEANLMALTAALH 165 (454)
T ss_dssp TTTTCSCCHHHHHHHHHHHHTCSCCCSEESS------------HHHHHHHHHHHSTTCSEEEEESSHHHHHHHHHHHHHH
T ss_pred hhcccCCCHHHHHHHHHHHhcCCCccCCcHH------------HHHHHHHHHHhCCCCCEEEEeCchHHHHHHHHHHHHh
Confidence 3457888777766544443221122222222 2367788888875333456779999999999999988
Q ss_pred HHHhcCCCCCCEEEE-cCCCCcccHHHHH-----HCCcEEEEEcCCCCCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCcc
Q 001989 671 YHKARGDHHRNVCII-PVSAHGTNPATAA-----MCGMKIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYP-STHG 743 (985)
Q Consensus 671 ~~~~~g~~~~~~IIv-~~~~Hg~~~~~a~-----~~G~~vv~v~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G 743 (985)
|. ++++||. ...+||....... ........+|.+ |++++++.++++.+++++|+++-. +..|
T Consensus 166 ~t------gr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~p~n-----d~~~l~~~l~~~~~~iAavIvEPv~g~~G 234 (454)
T 4ao9_A 166 FT------GRRKIVVFSGGYHGGVLGFGARPSPTTVPFDFLVLPYN-----DAQTARAQIERHGPEIAVVLVEPMQGASG 234 (454)
T ss_dssp HH------TCCEEEEETTCBCSTTCBBSSSBCTTSCCSEEEEECTT-----CHHHHHHHHHHTGGGEEEEEECSEESTTT
T ss_pred cc------cCCeEEEEeCCcCCccccccccccCccCCCCcccCCCc-----hHHHHHHHHhhcCCceEEEEeccccCCCC
Confidence 73 4566765 6678885432211 123456667764 899999999877778999988642 4567
Q ss_pred ccccC---HHHHHHHHHHcCCEEEEEccccccccCCCCCC---cc--CCcEEEeCCcccccccCCCCCCceEEEEEcccc
Q 001989 744 VYEEG---IDEICKIIHDNGGQVYMDGANMNAQVGLTSPG---YI--GADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHL 815 (985)
Q Consensus 744 ~i~~d---i~eI~~la~~~galliVD~a~~~~~~~l~~pg---~~--g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l 815 (985)
++.++ +++|.++|+++|++||+|+++. +- ....+ .+ -+|+++++ |.++ +|.| +|.+.+++++
T Consensus 235 ~~~p~~~fL~~lr~lc~~~g~lLI~DEV~t-GR--~G~~~a~e~~gv~PDi~t~g--K~lg----gG~P-iga~~~~~ei 304 (454)
T 4ao9_A 235 CIPGQPDFLQALRESATQVGALLVFDEVMT-SR--LAPHGLANKLGIRSDLTTLG--KYIG----GGMS-FGAFGGRADV 304 (454)
T ss_dssp CEECCHHHHHHHHHHHHHHTCEEEEECTTG-GG--GSTTCHHHHHTCCCSEEEEE--GGGG----TTSS-CEEEEECHHH
T ss_pred ccCCchhhHHHHHHHHhhcCCEEEEECCCc-CC--CccccchhccCCCCcEEEec--cccC----CCCc-ceeeeeHHHH
Confidence 77622 9999999999999999999884 21 11111 11 26998764 7764 3444 6677778777
Q ss_pred cCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhcc---CCe
Q 001989 816 APFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKH---YPI 892 (985)
Q Consensus 816 ~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~g---~~l 892 (985)
++.+.... + .....+++.|++++++++.+.|..+..+++ .++..++.++|+++|++. .++
T Consensus 305 ~~~~~~~~-~-------------~~~h~~T~~gnPla~AAala~L~~l~~~~~---~~~~~~~g~~l~~~L~~l~~~~~~ 367 (454)
T 4ao9_A 305 MALFDPRT-G-------------PLAHSGTFNNNVMTMAAGYAGLTKLFTPEA---AGALAERGEALRARLNALCANEGV 367 (454)
T ss_dssp HGGGCTTT-C-------------SCCCCCTTTTCHHHHHHHHHHHHHTSCHHH---HHHHHHHHHHHHHHHHHHHHHHTB
T ss_pred HHHHhhcc-C-------------CccccCCCCCCHHHHHHHHHHHHHHhccCh---hHHHHHHHHHHHHHHHHHHhhCCC
Confidence 66553210 0 001123456688888888899998876554 446677888898888651 222
Q ss_pred e--ecCCCCceeeEEEEEecC-----ccccCCCC---HHHHHHHHHHCCCccCCCCCCCCCEEEEeccCCCCHHHHHHHH
Q 001989 893 L--FRGVNGTVAHEFIVDLRG-----LKNTAGIE---PEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKSWTGIVM 962 (985)
Q Consensus 893 ~--~~~~~~~~~~~~iv~~~~-----~~~~~g~~---~~~v~~~L~~~Gi~~~~~~~p~~~~lris~t~~~t~eeId~~~ 962 (985)
. +.+. +.. +-+.+.. .......+ ...+...|.++||++.+. +.+ .++..+|++|||+
T Consensus 368 ~~~vrg~-G~m---~gi~f~~~~~~~~~~~~~~d~~~~~~~~~~ll~~Gv~~~p~-----~~~--~~s~~~T~~dId~-- 434 (454)
T 4ao9_A 368 AMQFTGI-GSL---MNAHFVQGDVRSSEDLAAVDGRLRQLLFFHLLNEDIYSSPR-----GFV--VLSLPLTDADIDR-- 434 (454)
T ss_dssp SCEEEEE-TTE---EEEESCCSCCCSGGGGTTCCHHHHHHHHHHHHHTTEECCTT-----CEE--ECCTTCCHHHHHH--
T ss_pred CEEEeee-ceE---EEEEEecCCCCCHHHHHhhhHHHHHHHHHHHHHCCEEEcCC-----CCE--EEeCCCCHHHHHH--
Confidence 1 1111 111 1222210 00000112 235667788999987432 233 3455589999999
Q ss_pred ccCChhHHHHhhccC
Q 001989 963 LSSPSEKKLHRLKMG 977 (985)
Q Consensus 963 ~~~~l~~~~~~~~~~ 977 (985)
+++++++++.++.+.
T Consensus 435 ~l~al~~~l~~~~a~ 449 (454)
T 4ao9_A 435 YVAAIGSFIGGHGAL 449 (454)
T ss_dssp HHHHHHHHHHHSGGG
T ss_pred HHHHHHHHHHhcccc
Confidence 889999999987763
|
| >1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis, pyridoxal 5'-phosphate, gamma-famil; HET: PLP; 2.90A {Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A* 1i43_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=4.2e-17 Score=189.99 Aligned_cols=268 Identities=19% Similarity=0.186 Sum_probs=182.0
Q ss_pred HHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCch--
Q 001989 212 SLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDLK-- 289 (985)
Q Consensus 212 ~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~~-- 289 (985)
...++++.+|+++|.+ ...++.+|++++.+++.++ . ++||+||+++..|+++...++..++..|+++++++.+
T Consensus 115 ~~~~l~~~lA~l~g~~--~~v~~~sG~~Ai~~al~~l-~--~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~v~~v~~~d~ 189 (445)
T 1qgn_A 115 TTVVLEEKISALEGAE--STLLMASGMCASTVMLLAL-V--PAGGHIVTTTDCYRKTRIFIETILPKMGITATVIDPADV 189 (445)
T ss_dssp HHHHHHHHHHHHHTCS--EEEEESCHHHHHHHHHHHH-S--CSSCEEEEETTSCHHHHHHHHHTGGGGTCEEEEECSSCH
T ss_pred HHHHHHHHHHHHhCCC--cEEEeCCHHHHHHHHHHHH-h--CCCCEEEEcCCCchhHHHHHHHHHHHcCCEEEEeCCCCH
Confidence 3556788999999987 3556677777666666554 2 3789999999999998888776566789999999764
Q ss_pred -hhhc-cCCCE-eEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCCCCCcccceEEEecC-ccccccCC
Q 001989 290 -DIDY-KSGDV-CGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKPPGELGADIVVGSA-QRFGVPMG 364 (985)
Q Consensus 290 -~l~~-l~~~t-~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~~~~~~GaDi~v~s~-k~lg~P~~ 364 (985)
++++ ++++| ++|++.+| |.+|.+.|+++|+++||++|++++|| +.++.+....+.++|+|+++.|+ |.++
T Consensus 190 ~~l~~ai~~~tv~lV~le~p~NptG~v~dl~~I~~la~~~g~~livD-~a~~~~~~~~~~~~g~Div~~S~sK~~g---- 264 (445)
T 1qgn_A 190 GALELALNQKKVNLFFTESPTNPFLRCVDIELVSKLCHEKGALVCID-GTFATPLNQKALALGADLVLHSATKFLG---- 264 (445)
T ss_dssp HHHHHHHHHSCEEEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEE-CTTTCTTTCCTTTTTCSEEEECTTTTTT----
T ss_pred HHHHHHhccCCCCEEEEeCCCCCCCcccCHHHHHHHHHHcCCEEEEE-CCCcccccCCccccCCEEEEECCccccc----
Confidence 5555 77788 99999998 78999999999999999999999995 45555555567789999999998 6554
Q ss_pred CCCCc---EEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcc
Q 001989 365 YGGPH---AAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPE 441 (985)
Q Consensus 365 ~GGP~---~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~ 441 (985)
|++ +|++++++++++.+... ++.-|+.. .++.+ |+...+.+
T Consensus 265 --g~gd~~~G~l~~~~~l~~~l~~~-------------------------~~~~g~~~----~~~~a-----~~~~~~l~ 308 (445)
T 1qgn_A 265 --GHNDVLAGCISGPLKLVSEIRNL-------------------------HHILGGAL----NPNAA-----YLIIRGMK 308 (445)
T ss_dssp --CSSSCCCEEEEECHHHHHHHHHH-------------------------HHHHCCCC----CHHHH-----HHHHHHGG
T ss_pred --ccccceEEEEEECHHHHHHHHHH-------------------------HHHhCCCC----CHHHH-----HHHHHhHH
Confidence 333 68999998877654100 00011100 11111 11122334
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcCCCe-EEcCC-----C-----------CcceEEEecCC----HHHHHHHHHHcCceee
Q 001989 442 GLKTIAQRVHGLAGTFALGLKKLGTV-EVQGL-----P-----------FFDTVKVKCAD----AHAIASAAYKIEMNLR 500 (985)
Q Consensus 442 Gl~~i~~~~~~~a~~l~~~L~~~g~~-~~~~~-----~-----------~~~~~~~~~~~----~~~v~~~L~~~GI~~~ 500 (985)
.+....++..+++.++.+.|++.+++ ++..+ + ....+.|.+++ +..+.+.|...++.++
T Consensus 309 ~l~~r~~~~~~~a~~l~~~L~~~p~v~~v~~p~l~~~p~~~~~~~~~~g~g~ivsf~l~~~~~~~~~~l~~l~~~~i~~s 388 (445)
T 1qgn_A 309 TLHLRVQQQNSTALRMAEILEAHPKVRHVYYPGLQSHPEHHIAKKQMTGFGGAVSFEVDGDLLTTAKFVDALKIPYIAPS 388 (445)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSSSSTTHHHHHHHCSCCCSEEEEEESSCHHHHHHHHHHCSSSEECSC
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCceEEECCCCCCCchHHHHHHhccCCCcEEEEEECCCHHHHHHHHHhCCCceEecc
Confidence 45556667778899999999988547 44321 1 23457777764 3334444432233211
Q ss_pred ------e---------------------ecCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 501 ------V---------------------VDSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 501 ------~---------------------~~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
. +.++.||+|++ .||+|++++.|.+
T Consensus 389 ~G~~~sl~~~p~~~~h~~~~~~~~~~~g~~~~~iRlSvG----~Edid~li~~L~~ 440 (445)
T 1qgn_A 389 FGGCESIVDQPAIMSYWDLSQSDRAKYGIMDNLVRFSFG----VEDFDDLKADILQ 440 (445)
T ss_dssp CCSSSCEEECHHHHHSTTSCHHHHHTTTCCSSEEEEECC----SSCHHHHHHHHHH
T ss_pred CCCCceeeecccccccccCCHHHHHhcCCCCCeEEEEec----cCCHHHHHHHHHH
Confidence 0 12478999998 4678888888763
|
| >2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB: 1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=1.6e-17 Score=191.23 Aligned_cols=163 Identities=18% Similarity=0.202 Sum_probs=127.6
Q ss_pred HHHHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHH----HHCCcEEEEE
Q 001989 632 EMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATA----AMCGMKIVSV 707 (985)
Q Consensus 632 ~~~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a----~~~G~~vv~v 707 (985)
....++++++++++|.+ ..+.+++|++|+..++.++. .++++||++...|+.+.... +..|++++.+
T Consensus 64 ~~~~~l~~~la~~~g~~-~~i~~~sG~~a~~~~l~~~~--------~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~~v 134 (398)
T 2rfv_A 64 PTTDALEKKLAVLERGE-AGLATASGISAITTTLLTLC--------QQGDHIVSASAIYGCTHAFLSHSMPKFGINVRFV 134 (398)
T ss_dssp HHHHHHHHHHHHHHTCS-EEEEESSHHHHHHHHHHHHC--------CTTCEEEEESSSCHHHHHHHHTHHHHTTCEEEEE
T ss_pred hHHHHHHHHHHHHhCCC-cEEEECCHHHHHHHHHHHHh--------CCCCEEEEcCCCcccHHHHHHHHHHHcCCEEEEe
Confidence 44668899999999987 45666778877755544331 36789999988887665544 6789999999
Q ss_pred cCCCCCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCccCCcE
Q 001989 708 GTDAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIGADV 786 (985)
Q Consensus 708 ~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~g~Di 786 (985)
|.+ |+++|+++++ +++++|++++| |++|.+. |+++|+++|+++|+++|+|+++..+. +..+..+++|+
T Consensus 135 ~~~-----d~~~l~~~i~---~~~~~v~~~~~~nptG~~~-~l~~i~~l~~~~~~~li~De~~~~~~--~~~~~~~~~di 203 (398)
T 2rfv_A 135 DAA-----KPEEIRAAMR---PETKVVYIETPANPTLSLV-DIETVAGIAHQQGALLVVDNTFMSPY--CQQPLQLGADI 203 (398)
T ss_dssp CTT-----SHHHHHHHCC---TTEEEEEEESSBTTTTBCC-CHHHHHHHHHHTTCEEEEECTTTCTT--TCCGGGGTCSE
T ss_pred CCC-----CHHHHHHhcC---CCCeEEEEECCCCCCCccc-CHHHHHHHHHHcCCEEEEECCCcccc--cCCchhhCCcE
Confidence 974 8999999997 78999999998 5799998 89999999999999999999985332 23455678999
Q ss_pred EEeCCcccccccCCCCCCceEEEEEcccccC
Q 001989 787 CHLNLHKTFCIPHGGGGPGMGPIGVKKHLAP 817 (985)
Q Consensus 787 ~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~ 817 (985)
++.|+||+|+.| |++-+|++++++++.+
T Consensus 204 ~~~s~sK~~~~~---g~~~~G~~~~~~~~~~ 231 (398)
T 2rfv_A 204 VVHSVTKYINGH---GDVIGGIIVGKQEFID 231 (398)
T ss_dssp EEEETTTTTTCS---SCCCCEEEEECHHHHH
T ss_pred EEEeCcccccCC---CCceEEEEEECHHHHH
Confidence 999999998533 2222499999876653
|
| >3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate aminotransferase, colitose, perosamine, O-antigen, pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=1.2e-16 Score=183.21 Aligned_cols=306 Identities=15% Similarity=0.121 Sum_probs=188.1
Q ss_pred HHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcCCCC-
Q 001989 634 FNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAK- 712 (985)
Q Consensus 634 ~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~d~~- 712 (985)
..++++.+++++|.+. .+++++|++|+..++.+++. ...++..++++|+++...|..+...+...|++++.++++++
T Consensus 36 ~~~l~~~la~~~~~~~-~i~~~sGt~a~~~al~~~~~-~~~~~~~~g~~Vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 113 (390)
T 3b8x_A 36 VKQYETQFAKTFGSKY-AVMVSSGSTANLLMIAALFF-TKKPRLKKGDEIIVPAVSWSTTYYPLQQYGLRVKFVDIDINT 113 (390)
T ss_dssp HHHHHHHHHHHHTCSE-EEEESCHHHHHHHHHHHTTS-SSSCSCCTTCEEEEESSSCHHHHHHHHHTTCEEEEECBCTTT
T ss_pred HHHHHHHHHHHHCCCc-EEEECCHHHHHHHHHHHHHh-hhhcCCCCcCEEEECCCCcHHHHHHHHHcCCEEEEEecCccc
Confidence 5578899999999874 46677888777555544310 00001246789999998887777777889999999999876
Q ss_pred CCCCHHHHHHHHHhcCCCEEEEEEEcCCCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCccCC--cEEEeC
Q 001989 713 GNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIGA--DVCHLN 790 (985)
Q Consensus 713 g~iD~e~L~~~i~~~~~~t~~Vvv~~pn~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~g~--Di~~~s 790 (985)
+.+|+++|+++++ ++|++|++++ .+|... |+++|.++|+++|+++|+|++|..+... ....+|. |+.+++
T Consensus 114 ~~~d~~~l~~~i~---~~~~~v~~~~--~~g~~~-~~~~i~~l~~~~~~~li~D~a~~~g~~~--~~~~~g~~~~~~~~s 185 (390)
T 3b8x_A 114 LNIDIESLKEAVT---DSTKAILTVN--LLGNPN-NFDEINKIIGGRDIILLEDNCESMGATF--NNKCAGTFGLMGTFS 185 (390)
T ss_dssp CSBCHHHHHHHCC---TTEEEEEEEC--GGGCCC-CHHHHHHHHTTSCCEEEEECTTCTTCEE--TTEETTSSSSEEEEE
T ss_pred cCcCHHHHHHHhC---cCCeEEEEEC--CccChh-hHHHHHHHHHHcCCEEEEECcCcccCEE--CCcccccccceEEEE
Confidence 8999999999997 7899999875 567777 8999999999999999999999643321 2223444 666544
Q ss_pred CcccccccCCCCCCceEEEEEcc-cccCcCCC-CccccCCC------------C--CCC--CCCCCCCCCCCcchhhhHH
Q 001989 791 LHKTFCIPHGGGGPGMGPIGVKK-HLAPFLPS-HPVVSTGG------------I--PAP--EKSQPLGTIAAAPWGSALI 852 (985)
Q Consensus 791 ~hK~l~~p~g~GGPg~G~i~~~~-~l~~~lp~-~~~g~~~~------------~--~~~--~~~~~~~~i~s~~~g~~~~ 852 (985)
|..++.+. +|.| |++++++ .+.+.+.. ...|...+ . ..+ ..+....+... ....
T Consensus 186 --~~~~k~~~-~g~g-G~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~----~~~~ 257 (390)
T 3b8x_A 186 --SFYSNHIA-TMEG-GCIVTDDEEIYHILLCIRAHGWTRNLPKKNKVTGVKSDDQFEESFKFVLPGYNVRP----LEMS 257 (390)
T ss_dssp --CCTTSSSC-SSSC-EEEEESCHHHHHHHHHHTBTTBSTTSCSEETTTEECCSCTTTSSSCBCSCCCBCCC----CHHH
T ss_pred --ccCCCCCc-cCCc-eEEEeCCHHHHHHHHHHHhcCCCccccccccccccccccccccccceeccccccCc----CHHH
Confidence 22222211 2334 8888875 44321110 00110000 0 000 00000001101 1222
Q ss_pred HHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhccCCeeecCCC-CceeeEEEEEecCccccCCCCHHHHHHHHHHCC
Q 001989 853 LPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVN-GTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYG 931 (985)
Q Consensus 853 ~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~g~~l~~~~~~-~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~G 931 (985)
++.+.+.+ +.+.+..++..++++++.++|++..++...++. ...++.+.+.++. ..+.+.+++.+.|.++|
T Consensus 258 aa~~l~~l-----~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~i~~~~---~~~~~~~~l~~~L~~~g 329 (390)
T 3b8x_A 258 GAIGIEQL-----KKLPRFISVRRKNAEYFLDKFKDHPYLDVQQETGESSWFGFSFIIKK---DSGVIRKQLVENLNSAG 329 (390)
T ss_dssp HHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHTTCSSEEECCCCSBCCCCEEEEEECT---TSCCCHHHHHHHHHHTT
T ss_pred HHHHHHHH-----HHHHHHHHHHHHHHHHHHHHhcCCCCcccCCCCCCcccEEEEEEecC---cCcccHHHHHHHHHHCC
Confidence 22222222 445666777888999999999863233222211 1222334445431 11457889999999999
Q ss_pred CccCCC------CC-CC-------------------CCEEEEeccCCCCHHHHHHHHccCCh
Q 001989 932 FHGPTM------SW-PV-------------------PGTLMIEPTESESKSWTGIVMLSSPS 967 (985)
Q Consensus 932 i~~~~~------~~-p~-------------------~~~lris~t~~~t~eeId~~~~~~~l 967 (985)
|.++.. .. |. .+.||++++..+|++|||+ ++++|
T Consensus 330 I~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~t~~di~~--i~~~l 389 (390)
T 3b8x_A 330 IECRPIVTGNFLKNTDVLKYFDYTVHNNVDNAEYLDKNGLFVGNHQIELFDEIDY--LREVL 389 (390)
T ss_dssp BCCBCSTTSSGGGCHHHHTTCEEEESSCCHHHHHHHHHEEEEECCSSCCHHHHHH--HHHHT
T ss_pred CCeeeecCCchhhcchhhhcCCCCCcCCChHHHHHhcCEEEeeCCCCCCHHHHHH--HHHhh
Confidence 987531 12 20 1369999999999999999 44443
|
| >3nyt_A Aminotransferase WBPE; PLP binding, nucleotide-sugar binding; HET: ULP; 1.30A {Pseudomonas aeruginosa} PDB: 3nys_A* 3nyu_A* 3nu8_A* 3nu7_A* 3nub_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=7.8e-18 Score=191.44 Aligned_cols=293 Identities=16% Similarity=0.089 Sum_probs=188.3
Q ss_pred HHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcCCCC-
Q 001989 634 FNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAK- 712 (985)
Q Consensus 634 ~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~d~~- 712 (985)
..++++.+++++|.+. .+++++|++|++.++.+++ ..++++|+++...|......+...|++++.++++++
T Consensus 37 ~~~l~~~la~~~~~~~-~~~~~sGt~al~~al~~~~-------~~~gd~Vi~~~~~~~~~~~~~~~~G~~~~~~~~~~~~ 108 (367)
T 3nyt_A 37 VTELEDRLADFVGAKY-CISCANGTDALQIVQMALG-------VGPGDEVITPGFTYVATAETVALLGAKPVYVDIDPRT 108 (367)
T ss_dssp HHHHHHHHHHHHTCSE-EEEESCHHHHHHHHHHHTT-------CCTTCEEEEESSSCTHHHHHHHHTTCEEEEECBCTTT
T ss_pred HHHHHHHHHHHhCCCc-EEEeCCHHHHHHHHHHHhC-------CCCcCEEEECCCccHHHHHHHHHcCCEEEEEecCCcc
Confidence 5578899999999874 4667788887765555432 247889999998888887778889999999999876
Q ss_pred CCCCHHHHHHHHHhcCCCEEEEEEEcCCCccccccCHHHHHHHHHHcCCEEEEEccccccccCC-CCCCccCCcEEEeCC
Q 001989 713 GNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGL-TSPGYIGADVCHLNL 791 (985)
Q Consensus 713 g~iD~e~L~~~i~~~~~~t~~Vvv~~pn~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l-~~pg~~g~Di~~~s~ 791 (985)
+.+|+++|+++++ +++++|++++ .+|... |+++|.++|+++|+++|+|++|..+...- ...+.++ |++++|+
T Consensus 109 ~~~d~~~l~~~i~---~~~~~v~~~~--~~G~~~-~~~~i~~la~~~~~~li~D~a~~~g~~~~~~~~~~~~-di~~~Sf 181 (367)
T 3nyt_A 109 YNLDPQLLEAAIT---PRTKAIIPVS--LYGQCA-DFDAINAIASKYGIPVIEDAAQSFGASYKGKRSCNLS-TVACTSF 181 (367)
T ss_dssp CSBCGGGTGGGCC---TTEEEECCBC--GGGCCC-CHHHHHHHHHHTTCCBEEECTTTTTCEETTEETTSSS-SEEEEEC
T ss_pred CCcCHHHHHHhcC---cCCcEEEeeC--CccChh-hHHHHHHHHHHcCCEEEEECccccCCeECCeeccCCC-CEEEEEC
Confidence 8899999999997 7899888543 679888 89999999999999999999986433210 1123344 9999995
Q ss_pred --cccccccCCCCCCceEEEEEc-ccccCcCCC-CccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHH
Q 001989 792 --HKTFCIPHGGGGPGMGPIGVK-KHLAPFLPS-HPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKG 867 (985)
Q Consensus 792 --hK~l~~p~g~GGPg~G~i~~~-~~l~~~lp~-~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eG 867 (985)
||+++.+ |. +|+++++ +++.+.+.. ...|..... .+ ...+. +.. .....++.+.+.+ +.
T Consensus 182 ~~~K~l~~~----g~-gg~~~~~~~~l~~~~~~~~~~g~~~~~-~~-~~~g~-~~~----~~~~~aa~~~~~l-----~~ 244 (367)
T 3nyt_A 182 FPSAPLGCY----GD-GGAIFTNDDELATAIRQIARHGQDRRY-HH-IRVGV-NSR----LDTLQAAILLPKL-----EI 244 (367)
T ss_dssp CTTSSSCCS----SC-CEEEEESCHHHHHHHHHHTBTTEEETT-EE-CSCCC-BCC----CCHHHHHHHHHHH-----HT
T ss_pred CCCCcCCCc----Cc-eeEEEeCCHHHHHHHHHHHhcCCCcCc-ee-eccCc-CCC----ccHHHHHHHHHHH-----HH
Confidence 8988421 22 6677775 444332211 001110000 00 00000 111 1222222222222 23
Q ss_pred HHHHHHHHHHHHHHHHHHhhc-cCCeeecCCC-CceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCCC-C----
Q 001989 868 LTEASKIAILNANYMAKRLEK-HYPILFRGVN-GTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSW-P---- 940 (985)
Q Consensus 868 l~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~-~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~~-p---- 940 (985)
+.+..++..++++++.+.|++ ++.+....+. ...++.+.+.++ +.+++.+.|.++||.+..... |
T Consensus 245 ~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~l~~~L~~~GI~~~~~~~~~~~~~ 316 (367)
T 3nyt_A 245 FEEEIALRQKVAAEYDLSLKQVGIGTPFIEVNNISVYAQYTVRMD--------NRESVQASLKAAGVPTAVHYPIPLNKQ 316 (367)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCCCCCTTEECCCSSEEEECS--------SHHHHHHHHHHHTCCCBCSCSSCGGGS
T ss_pred HHHHHHHHHHHHHHHHHHhccCCeeccCCCCCCceeeEEEEEEeC--------CHHHHHHHHHHCCCceeccCCCccccC
Confidence 455566677888899999986 3333211111 122223444432 578899999999997653211 1
Q ss_pred ----------------CCCEEEEeccCCCCHHHHHHHHccCChh
Q 001989 941 ----------------VPGTLMIEPTESESKSWTGIVMLSSPSE 968 (985)
Q Consensus 941 ----------------~~~~lris~t~~~t~eeId~~~~~~~l~ 968 (985)
....|++++....|++|||+ +++.++
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~l~lp~~~~~t~~~i~~--v~~~~~ 358 (367)
T 3nyt_A 317 PAVADEKAKLPVGDKAATQVMSLPMHPYLDTASIKI--ICAALT 358 (367)
T ss_dssp GGGCCTTCCCHHHHHHHHHEEEECCCTTCCHHHHHH--HHHHHH
T ss_pred hhhhccCCCChHHHHHHhCeEEccCCCCCCHHHHHH--HHHHHH
Confidence 12578999999999999999 555544
|
| >2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme biosynthesis, pyridoxal PHOS dependent, transferase, acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus} SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=8.1e-17 Score=185.01 Aligned_cols=275 Identities=12% Similarity=0.081 Sum_probs=191.0
Q ss_pred HHHHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHh-hhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc
Q 001989 210 LESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCN-NIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL 288 (985)
Q Consensus 210 l~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~-~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~ 288 (985)
.+...++++.+|+++|.+ .++.+ .+|+.+..+++.++ +. .+||+|+++...|+++...++. .|++++.++.
T Consensus 90 ~~~~~~l~~~la~~~~~~-~~i~~-~sG~~a~~~~~~~l~~~--~~gd~Vl~~~~~~~~~~~~~~~----~g~~~~~v~~ 161 (401)
T 2bwn_A 90 TAYHRRLEAEIAGLHQKE-AALVF-SSAYNANDATLSTLRVL--FPGLIIYSDSLNHASMIEGIKR----NAGPKRIFRH 161 (401)
T ss_dssp BHHHHHHHHHHHHHTTCS-EEEEE-SCHHHHHHHHHHHHHHH--STTCEEEEETTCCHHHHHHHHH----SCCCEEEECT
T ss_pred hHHHHHHHHHHHHHhCCC-cEEEE-CCcHHHHHHHHHHHhcC--CCCCEEEECchhhHHHHHHHHH----cCCeEEEEcC
Confidence 355677899999999974 44545 44444555544332 22 3789999999999999998853 5788888865
Q ss_pred ---hhhhc-cC----CCEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCCCCC-----cc----cce
Q 001989 289 ---KDIDY-KS----GDVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKPPG-----EL----GAD 350 (985)
Q Consensus 289 ---~~l~~-l~----~~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~~~~-----~~----GaD 350 (985)
+++++ +. +++++|++.+| |++|.+.|+++|.++||++|+++++| +.++.|.+.+.+ .+ +.|
T Consensus 162 ~d~~~le~~l~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D-ea~~~g~~~~~g~~~~~~~~~~~~~~ 240 (401)
T 2bwn_A 162 NDVAHLRELIAADDPAAPKLIAFESVYSMDGDFGPIKEICDIAEEFGALTYID-EVHAVGMYGPRGAGVAERDGLMHRID 240 (401)
T ss_dssp TCHHHHHHHHHHSCTTSCEEEEEESBCTTTCCBCCHHHHHHHHHHHTCEEEEE-CTTTTTTSSTTSCCHHHHHTCGGGCS
T ss_pred CCHHHHHHHHHhhccCCceEEEEecCcCCCCCcCCHHHHHHHHHHcCCEEEEe-ccccccccCCCCceeeeccCccccCc
Confidence 35554 43 57899999987 78999999999999999999999995 355544432221 12 358
Q ss_pred EEEecC-ccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHH
Q 001989 351 IVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLAN 429 (985)
Q Consensus 351 i~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~ 429 (985)
++++|. |.|+. || |++..++++.+.+.. .....+...+|++ ....++
T Consensus 241 i~~~s~sK~~~~------~G-G~~~~~~~~~~~l~~---------------------~~~~~~~~~~~~~----~~~~a~ 288 (401)
T 2bwn_A 241 IFNGTLAKAYGV------FG-GYIAASARMVDAVRS---------------------YAPGFIFSTSLPP----AIAAGA 288 (401)
T ss_dssp EEEEESSSTTCS------CC-EEEEECHHHHHHHHH---------------------HCHHHHTSBCCCH----HHHHHH
T ss_pred EEEeechhhccC------CC-CEEecCHHHHHHHHH---------------------hCcCceecCCCCH----HHHHHH
Confidence 999887 88753 33 788888776654310 0000111112211 222233
Q ss_pred HHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCCCcceEEEecCC---HHHHHHHHH-HcCceeeeec--
Q 001989 430 MAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDTVKVKCAD---AHAIASAAY-KIEMNLRVVD-- 503 (985)
Q Consensus 430 ~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~---~~~v~~~L~-~~GI~~~~~~-- 503 (985)
.+++ .++...|++++.++..++.+++.+.|+++| +++..+ ..+.+.+..+. +.++.+.|. ++||.+....
T Consensus 289 ~~al--~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~-~~~~~~~~~~~~~~~~~~~~~L~~~~gi~v~~~~~~ 364 (401)
T 2bwn_A 289 QASI--AFLKTAEGQKLRDAQQMHAKVLKMRLKALG-MPIIDH-GSHIVPVVIGDPVHTKAVSDMLLSDYGVYVQPINFP 364 (401)
T ss_dssp HHHH--HHHTSHHHHHHHHHHHHHHHHHHHHHHHHT-CCBCCC-SSSCEEEECCCHHHHHHHHHHHHHHHCEECCEECTT
T ss_pred HHHH--HHHHhcccHHHHHHHHHHHHHHHHHHHHCC-CcccCC-CCCeEEEEeCChHHHHHHHHHHHhcCCEEEeecCCC
Confidence 3333 566666789999999999999999999886 777642 22346666653 678999996 7899885431
Q ss_pred --C---CeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 504 --S---NTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 504 --~---~~lris~t~~~t~edId~li~aL~~ 529 (985)
+ +.+|++++.++|++|+++++++|.+
T Consensus 365 ~~~~~~~~iRis~~~~~t~~~i~~~~~~l~~ 395 (401)
T 2bwn_A 365 TVPRGTERLRFTPSPVHDLKQIDGLVHAMDL 395 (401)
T ss_dssp TSCTTCCEEEECCCTTSCHHHHHHHHHHHHH
T ss_pred CCCCCCceEEEEeeCCCCHHHHHHHHHHHHH
Confidence 1 4899999999999999999999974
|
| >3acz_A Methionine gamma-lyase; L-methionine; HET: LLP; 1.97A {Entamoeba histolytica} PDB: 3aej_A* 3ael_A* 3aem_A* 3aen_A* 3aeo_A* 3aep_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=1.6e-16 Score=182.34 Aligned_cols=274 Identities=15% Similarity=0.122 Sum_probs=189.0
Q ss_pred HHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc---
Q 001989 212 SLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL--- 288 (985)
Q Consensus 212 ~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~--- 288 (985)
...++++.+|+++|.+ ...++.+|++++++++.++ . ++||+|++++..|+++...+..+++..|++++.++.
T Consensus 60 ~~~~l~~~la~~~g~~--~~i~~~sG~~ai~~~~~~~-~--~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~~~~v~~~d~ 134 (389)
T 3acz_A 60 TVEQFEEMVCSIEGAA--GSAAFGSGMGAISSSTLAF-L--QKGDHLIAGDTLYGCTVSLFTHWLPRFGIEVDLIDTSDV 134 (389)
T ss_dssp HHHHHHHHHHHHHTCS--EEEEESSHHHHHHHHHTTT-C--CTTCEEEEESSCCHHHHHHHHHHHHHTTCEEEEECTTCH
T ss_pred HHHHHHHHHHHHhCCC--eEEEeCCHHHHHHHHHHHH-h--CCCCEEEEeCCCchHHHHHHHHHHHHcCCEEEEECCCCH
Confidence 3456788999999987 4667788887666655443 2 378999999999999988887656678999999875
Q ss_pred hhhhc-cCCCEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCCCCCcccceEEEecC-ccccccCCC
Q 001989 289 KDIDY-KSGDVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKPPGELGADIVVGSA-QRFGVPMGY 365 (985)
Q Consensus 289 ~~l~~-l~~~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~~~~~~GaDi~v~s~-k~lg~P~~~ 365 (985)
+++++ +++++++|++++| |.+|.+.|+++|+++||++|++++|| +.++.+....|.++|+|+++.|. |.|++|
T Consensus 135 ~~l~~~i~~~~~~v~~~~~~nptG~~~~l~~i~~~~~~~~~~livD-~~~~~~~~~~~~~~~~di~~~S~sK~~~~~--- 210 (389)
T 3acz_A 135 EKVKAAWKPNTKMVYLESPANPTCKVSDIKGIAVVCHERGARLVVD-ATFTSPCFLKPLELGADIALHSVSKYINGH--- 210 (389)
T ss_dssp HHHHHTCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEE-CTTTCTTTCCGGGTTCSEEEEETTTTTTCS---
T ss_pred HHHHHhcCCCCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEE-CCCccccccCccccCCeEEEECChhhccCC---
Confidence 45666 7889999999998 78999999999999999999999995 34454444455678999999998 777643
Q ss_pred CCCcEEEEEEch-hhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcchHH
Q 001989 366 GGPHAAFLATSQ-EYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLK 444 (985)
Q Consensus 366 GGP~~G~l~~~~-~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~ 444 (985)
|++-+|++++++ ++.+++.... +...++. +++.+. ++ ..+.+.++
T Consensus 211 ~~~~~G~v~~~~~~~~~~l~~~~------------------------~~~g~~~-----~~~~~~-~~----~~~l~~l~ 256 (389)
T 3acz_A 211 GDVIGGVSSAKTAEDIATIKFYR------------------------KDAGSLM-----APMDAF-LC----ARGMKTLP 256 (389)
T ss_dssp SCCCCEEEEESSHHHHHHHHHHH------------------------HHHCCCC-----CHHHHH-HH----HHHHTTHH
T ss_pred CCceeEEEEECcHHHHHHHHHHH------------------------HhcCCCC-----CHHHHH-HH----HcCccHHH
Confidence 222248999988 7766541100 0000110 111111 11 11113455
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCeEEc--CC----C-----------CcceEEEecCCHHHHHHHHHHcCceeee------
Q 001989 445 TIAQRVHGLAGTFALGLKKLGTVEVQ--GL----P-----------FFDTVKVKCADAHAIASAAYKIEMNLRV------ 501 (985)
Q Consensus 445 ~i~~~~~~~a~~l~~~L~~~g~~~~~--~~----~-----------~~~~~~~~~~~~~~v~~~L~~~GI~~~~------ 501 (985)
...++..+++..+.+.|++.+.++-+ .. + ....+.|.+++..++.+.|.+.||.+..
T Consensus 257 ~r~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~~~~~~~~~~~~g~g~~~~~~l~~~~~~~~~l~~~~i~~~~~s~G~~ 336 (389)
T 3acz_A 257 IRMQIHMENGLKVAKFLEQHEKIVKVNHPGLESFPGHDIAKKQMTGYGSTFLFEMKSFEAAKKLMEHLKVCTLAVSLGCV 336 (389)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEESSHHHHHHHHTTCSSSEEBSCCCCS
T ss_pred HHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCCeEEEEEECCHHHHHHHHHhCCCcEECcCCCCc
Confidence 56677778888888888876433321 10 1 1234667665555666777777875432
Q ss_pred ------------------------ecCCeEEEEeccCCCHHHHHHHHHHHh
Q 001989 502 ------------------------VDSNTVTASFDETTTLEDVDKLFIVFA 528 (985)
Q Consensus 502 ------------------------~~~~~lris~t~~~t~edId~li~aL~ 528 (985)
+.++.+|+|++..++++.|+.|.++|.
T Consensus 337 ~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRlsvg~~~~~~li~~l~~al~ 387 (389)
T 3acz_A 337 DTLIEHPASMTHAAVPENIMRKQGITPELVRISVGIENVDDIIADLKQALE 387 (389)
T ss_dssp SCEEECTTTTTTSSSCHHHHHHHTCCTTEEEEECCSSCHHHHHHHHHHHHT
T ss_pred ccEeeCCcccccccCCHHHHHhcCCCcCeEEEEeccCCHHHHHHHHHHHHh
Confidence 114789999999999999999999886
|
| >2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.7e-17 Score=205.19 Aligned_cols=280 Identities=10% Similarity=0.014 Sum_probs=196.5
Q ss_pred HHHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeC---
Q 001989 211 ESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSD--- 287 (985)
Q Consensus 211 ~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~--- 287 (985)
..+.+.|+.+++++|.+.+ +.+++|+|++..++++++. ++||+||+++.+|+++..+++. .|+++++++
T Consensus 205 g~v~~~ee~la~l~G~d~~-i~~~~Gtt~a~~~~i~al~---~~GD~Vlv~~~~h~s~~~~~~~----~G~~~v~v~~~~ 276 (755)
T 2vyc_A 205 GAFGESEKYAARVFGADRS-WSVVVGTSGSNRTIMQACM---TDNDVVVVDRNCHKSIEQGLML----TGAKPVYMVPSR 276 (755)
T ss_dssp HHHHHHHHHHHHHHTCSEE-EEESSHHHHHHHHHHHHHC---CTTCEEEEESSCCHHHHHHHHH----HCCEEEEECCCB
T ss_pred cHHHHHHHHHHHHhCCCce-EEECCcHHHHHHHHHHHhc---CCCCEEEECCCchHHHHHHHHH----cCCEEEEEeCCC
Confidence 4678899999999999853 4566777777777777652 3899999999999999998754 377777764
Q ss_pred ---------------chhhhc-cC--CCEe--------EEEEEcCCCCeeeccHHHHHHHHHhCCcEEEEEecCccccC-
Q 001989 288 ---------------LKDIDY-KS--GDVC--------GVLVQYPGTEGEVLDYGDFIKNAHANGVKVVMATDLLALTI- 340 (985)
Q Consensus 288 ---------------~~~l~~-l~--~~t~--------~V~v~~pn~~G~v~di~~I~~~a~~~galliV~a~~~~lg~- 340 (985)
+++|++ +. ++++ +|++++||++|.+.|+++|+++||++|++++||. .++.++
T Consensus 277 ~~~g~~g~i~~~~~d~e~le~~i~~~~~~k~~~~~~~klvil~~pn~~G~v~dl~~I~~ia~~~~~~livDe-A~~~~~~ 355 (755)
T 2vyc_A 277 NRYGIIGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNCTYDGVCYNAKEAQDLLEKTSDRLHFDE-AWYGYAR 355 (755)
T ss_dssp CTTSCBCCCCGGGGSHHHHHHHHHHCTTTGGGTTCCCSCEEEESSCTTSEEECHHHHHHHHTTTCSEEEEEC-TTCTTGG
T ss_pred CccccccccCcCCCCHHHHHHHHHhCccccccccCCCeEEEEECCCCCceecCHHHHHHHHHHcCCEEEEEC-cCchhcc
Confidence 334544 42 3454 8899999999999999999999999999999953 333211
Q ss_pred C------CCCCccc--ceE------EEecC-ccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecc
Q 001989 341 L------KPPGELG--ADI------VVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQ 405 (985)
Q Consensus 341 l------~~~~~~G--aDi------~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~ 405 (985)
. ..+. +| +|+ +++|+ |+|++| +++|+++++++. +.+ + ...+
T Consensus 356 ~~~~~~~~~~~-~g~~aD~~~~~~iv~~S~hK~L~g~-----~~g~~i~~~~~~-~~i---------~---~~~~----- 411 (755)
T 2vyc_A 356 FNPIYADHYAM-RGEPGDHNGPTVFATHSTHKLLNAL-----SQASYIHVREGR-GAI---------N---FSRF----- 411 (755)
T ss_dssp GCGGGTTSSSS-CSCCCCCSSBEEEEEEETTTSSSCC-----TTCEEEEEECCB-TCC---------C---HHHH-----
T ss_pred cCcccCCcchh-cCCcCCccCCCeEEEECccccccCc-----CCeeeeeecCcc-ccc---------C---HHHH-----
Confidence 1 1122 67 887 88888 766543 236788887651 001 0 0000
Q ss_pred cccccccccccCCCccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCC---------eEEcCCC---
Q 001989 406 TREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGT---------VEVQGLP--- 473 (985)
Q Consensus 406 tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~---------~~~~~~~--- 473 (985)
.....+.+.+|+|+ ..+.++.+++ .++..+|.+++.++..+++++++++|+++++ ++++.+.
T Consensus 412 -~~~~~~~~s~sp~~---~~iaal~aA~--~~l~~~gg~~~~~~~~~~a~~~r~~L~~l~~~~~~~~~~~~~~~~~~~~~ 485 (755)
T 2vyc_A 412 -NQAYMMHATTSPLY---AICASNDVAV--SMMDGNSGLSLTQEVIDEAVDFRQAMARLYKEFTADGSWFFKPWNKEVVT 485 (755)
T ss_dssp -HHHHHHTSCSSCCH---HHHHHHHHHH--HHHSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCEESSCSEEE
T ss_pred -HHHHHHhCCCCHHH---HHHHHHHHHH--HHHHhhhHHHHHHHHHHHHHHHHHHHHhccccccccccceeeccCchhcc
Confidence 00011123344443 4455555554 5666666678899999999999999998765 6655321
Q ss_pred ----------------------------------------C----c--ceEEEecC-----------C--HHHHHHHHHH
Q 001989 474 ----------------------------------------F----F--DTVKVKCA-----------D--AHAIASAAYK 494 (985)
Q Consensus 474 ----------------------------------------~----~--~~~~~~~~-----------~--~~~v~~~L~~ 494 (985)
. + ..++|..+ + +.++.+.|.+
T Consensus 486 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~Dp~~v~i~~~~~~~~G~~~~~g~~~~~l~~~L~~ 565 (755)
T 2vyc_A 486 DPQTGKTYDFADAPTKLLTTVQDCWVMHPGESWHGFKDIPDNWSMLDPIKVSILAPGMGEDGELEETGVPAALVTAWLGR 565 (755)
T ss_dssp CTTTCCEEEGGGSCHHHHHHCGGGTBCCTTCTTTCCTTCCTTSEEECTTEEEEECSCBCTTSSBCSSCCCHHHHHHHHHT
T ss_pred ccccccccccccccchhccchhhhhccCcccccccccccCCCccccCCeEEEEEcCCCCCCCCccccCCcHHHHHHHHHH
Confidence 0 1 13566665 2 4899999999
Q ss_pred cCceeeeecCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 495 IEMNLRVVDSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 495 ~GI~~~~~~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
+||.++....+.+|+++|..+|++++++|+++|.+
T Consensus 566 ~gI~~e~~~~~~v~~~~~~g~t~~~~~~l~~al~~ 600 (755)
T 2vyc_A 566 HGIVPTRTTDFQIMFLFSMGVTRGKWGTLVNTLCS 600 (755)
T ss_dssp TTCCCSEECSSEEEEECCTTCCTTTTHHHHHHHHH
T ss_pred CCCEEeecCCCeEEEEECCCCCHHHHHHHHHHHHH
Confidence 99999877789999999999999999999999974
|
| >3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: GLN PMP; 2.26A {Mus musculus} SCOP: c.67.1.0 PDB: 2zjg_A* 3e2f_A* 3e2z_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=5.3e-18 Score=195.33 Aligned_cols=297 Identities=13% Similarity=0.065 Sum_probs=186.5
Q ss_pred hHHHHHHHHHHHHHHHhCCC--c-cc-eecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEE
Q 001989 629 GYQEMFNNLGEWLCTITGFD--S-FS-LQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKI 704 (985)
Q Consensus 629 G~~~~~~e~~~~la~l~G~~--~-~~-~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~v 704 (985)
|..++.+++.+++.+.+|.+ . .. ++.++|++++..++.++. .++++|+++.+.|..+...++..|.++
T Consensus 62 g~~~l~~~la~~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~~~--------~~gd~vl~~~p~~~~~~~~~~~~g~~~ 133 (410)
T 3e2y_A 62 GHPALVKALSCLYGKIYQRQIDPNEEILVAVGAYGSLFNSIQGLV--------DPGDEVIIMVPFYDCYEPMVRMAGAVP 133 (410)
T ss_dssp CCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHHHHHHHHHC--------CTTCEEEEEESCCTTHHHHHHHTTCEE
T ss_pred ChHHHHHHHHHHHHHHhCCCCCCCCCEEEeCCcHHHHHHHHHHhc--------CCCCEEEEeCCCchhhHHHHHHcCCEE
Confidence 44455555666666666643 3 33 445566666654444331 467899998888888888888899999
Q ss_pred EEEcCC-----------CCCCCCHHHHHHHHHhcCCCEEEEEEEcCC-Cccccc--cCHHHHHHHHHHcCCEEEEEcccc
Q 001989 705 VSVGTD-----------AKGNINIEELRKAAEANRDNLSTLMVTYPS-THGVYE--EGIDEICKIIHDNGGQVYMDGANM 770 (985)
Q Consensus 705 v~v~~d-----------~~g~iD~e~L~~~i~~~~~~t~~Vvv~~pn-~~G~i~--~di~eI~~la~~~galliVD~a~~ 770 (985)
+.+|++ .++.+|+++|+++++ +++++|++++|+ ++|.+. .++++|+++|+++|+++|+|+++.
T Consensus 134 ~~~~~~~~~~~g~~~~~~~~~~d~~~l~~~~~---~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~ 210 (410)
T 3e2y_A 134 VFIPLRSKPTDGMKWTSSDWTFDPRELESKFS---SKTKAIILNTPHNPLGKVYTRQELQVIADLCVKHDTLCISDEVYE 210 (410)
T ss_dssp EEEECEECCCCSSCCBGGGEECCHHHHHTTCC---TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTT
T ss_pred EEEeccccccccccccccCCcCCHHHHHhhcC---CCceEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEEhhhh
Confidence 999886 245689999999987 789999999995 699983 279999999999999999999984
Q ss_pred cc-ccCCC--C----CCccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCC
Q 001989 771 NA-QVGLT--S----PGYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIA 843 (985)
Q Consensus 771 ~~-~~~l~--~----pg~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~ 843 (985)
.. ..+-. . +...+.++++.|++|+|+. +|.++|++++++++.+.+.... ...+.+.
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~g~----~G~r~G~~~~~~~~~~~~~~~~------------~~~~~~~- 273 (410)
T 3e2y_A 211 WLVYTGHTHVKIATLPGMWERTITIGSAGKTFSV----TGWKLGWSIGPAHLIKHLQTVQ------------QNSFYTC- 273 (410)
T ss_dssp TCBCTTCCCCCGGGSTTCGGGEEEEEEHHHHSSC----GGGCCEEEECCHHHHHHHHHHH------------HTTTCCC-
T ss_pred hcccCCCCCCCHHHcCCccCeEEEEecchhhcCC----CCceEEEEEECHHHHHHHHHHH------------HhhccCC-
Confidence 21 11100 1 1122345888899999854 3678999998877655432100 0001111
Q ss_pred CcchhhhHHHHHHHHHHHH------hcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccC
Q 001989 844 AAPWGSALILPISYTYIAM------MGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTA 916 (985)
Q Consensus 844 s~~~g~~~~~~~a~a~l~~------lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~ 916 (985)
+.....++.+++.. ...+.+.+..++..++++++.+.|++ ++.+. .+.+..+ +.+++..+. .
T Consensus 274 -----~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~--~~~~~~~--~~~~~~~~~--~ 342 (410)
T 3e2y_A 274 -----ATPLQAALAEAFWIDIKRMDDPECYFNSLPKELEVKRDRMVRLLNSVGLKPI--VPDGGYF--IIADVSSLG--A 342 (410)
T ss_dssp -----CHHHHHHHHHHHHHHHTTTTSTTSHHHHHHHHHHHHHHHHHHHHHTTTCEEE--BCSBSSE--EEEECGGGC--C
T ss_pred -----ChHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHCCCeec--CCCccEE--EEEEchhhh--c
Confidence 11222223334432 12345666777788889999999987 44432 2222232 334443211 0
Q ss_pred CCC--------HHHHHHHH-HHCCCccCCC-CCC-------CCCEEEEeccCCCCHHHHHHHHccCChh
Q 001989 917 GIE--------PEDVAKRL-MDYGFHGPTM-SWP-------VPGTLMIEPTESESKSWTGIVMLSSPSE 968 (985)
Q Consensus 917 g~~--------~~~v~~~L-~~~Gi~~~~~-~~p-------~~~~lris~t~~~t~eeId~~~~~~~l~ 968 (985)
+.+ ..+++++| .++||.+... .+. ..+.+||+++. ++++|++ +++.|+
T Consensus 343 ~~~~~~~~~~~~~~~~~~ll~~~gv~v~~g~~f~~~~~~~~~~~~iRis~~~--~~e~l~~--~l~~l~ 407 (410)
T 3e2y_A 343 DLSDMNSDEPYDYKFVKWMTKHKKLTAIPVSAFCDSKSKPHFEKLVRFCFIK--KDSTLDA--AEEIFR 407 (410)
T ss_dssp CCTTCCSSCCHHHHHHHHHHHHHSEECEEGGGGSCTTTHHHHTTEEEEECCC--CHHHHHH--HHHHHH
T ss_pred ccccccccccCHHHHHHHHHHHcCEEEeCchhhCCCCCCCCCCCEEEEEEcC--CHHHHHH--HHHHHH
Confidence 111 34677765 4679986431 121 24899999865 9999999 555554
|
| >1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A {Escherichia coli} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.75 E-value=6.8e-17 Score=185.03 Aligned_cols=281 Identities=16% Similarity=0.160 Sum_probs=181.7
Q ss_pred HHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHH----HHHCCcEEEEEcC
Q 001989 634 FNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPAT----AAMCGMKIVSVGT 709 (985)
Q Consensus 634 ~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~----a~~~G~~vv~v~~ 709 (985)
..++++.+++++|.+ ..+.+++|++|+..++.++ . .++++|+++...|+..... ++..|++++.++.
T Consensus 54 ~~~l~~~la~~~~~~-~~i~~~sGt~a~~~~~~~~---~-----~~g~~vl~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 124 (386)
T 1cs1_A 54 RDVVQRALAELEGGA-GAVLTNTGMSAIHLVTTVF---L-----KPGDLLVAPHDCYGGSYRLFDSLAKRGCYRVLFVDQ 124 (386)
T ss_dssp HHHHHHHHHHHHTCS-EEEEESSHHHHHHHHHHHH---C-----CTTCEEEEETTCCHHHHHHHHHHHTTTSCEEEEECT
T ss_pred HHHHHHHHHHHhCCC-cEEEeCCHHHHHHHHHHHH---h-----CCCCEEEEecCCcHhHHHHHHHHHHhcCCEEEEeCC
Confidence 557889999999987 4455677877665444332 1 3678999988877653332 3567999999987
Q ss_pred CCCCCCCHHHHHHHHHhcCCCEEEEEEEcCC-CccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCccCCcEEE
Q 001989 710 DAKGNINIEELRKAAEANRDNLSTLMVTYPS-THGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIGADVCH 788 (985)
Q Consensus 710 d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~pn-~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~g~Di~~ 788 (985)
+ |+++|+++++ +++++|++++|+ ++|.+. |+++|.++|+++|+++++|++|.... ...+..++.|+++
T Consensus 125 ~-----d~~~l~~~i~---~~~~~v~~~~~~nptG~~~-~l~~i~~l~~~~~~~li~De~~~~~~--~~~~~~~~~di~~ 193 (386)
T 1cs1_A 125 G-----DEQALRAALA---EKPKLVLVESPSNPLLRVV-DIAKICHLAREVGAVSVVDNTFLSPA--LQNPLALGADLVL 193 (386)
T ss_dssp T-----CHHHHHHHHH---TCCSEEEEECSCTTTCCCC-CHHHHHHHHHHTTCEEEEECTTTCTT--TCCGGGGTCSEEE
T ss_pred C-----CHHHHHHhhc---cCCcEEEEeCCCCCCCccc-CHHHHHHHHHHcCCEEEEECCCcccc--cCCccccCceEEE
Confidence 4 8999999998 788999999984 689998 89999999999999999999985322 2234467899999
Q ss_pred eCCcccccccCCCCCCc-eEEEEEcc-cccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHH
Q 001989 789 LNLHKTFCIPHGGGGPG-MGPIGVKK-HLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSK 866 (985)
Q Consensus 789 ~s~hK~l~~p~g~GGPg-~G~i~~~~-~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~e 866 (985)
.|+||+|+.| |+. +|++++++ ++.+.+.....+ .+. .. ++..+ ++.+..+ +
T Consensus 194 ~s~sK~~~~~----~~~~~G~~~~~~~~l~~~l~~~~~~-------------~~~-~~----~~~~~---~~~~~~l--~ 246 (386)
T 1cs1_A 194 HSCTKYLNGH----SDVVAGVVIAKDPDVVTELAWWANN-------------IGV-TG----GAFDS---YLLLRGL--R 246 (386)
T ss_dssp EETTTTTTCS----SCCCCEEEEESSHHHHHHHHHHHHH-------------HTC-BC----CHHHH---HHHHHHH--T
T ss_pred EcCcccccCC----CCceeEEEEeCcHHHHHHHHHHHHh-------------cCC-CC----CHHHH---HHHHhcc--c
Confidence 9999998532 222 38999886 555443211100 001 01 11111 1111211 2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCCe---eecCCC------------CceeeEEEEEecCccccCCCCHHHHHHHHHHCC
Q 001989 867 GLTEASKIAILNANYMAKRLEKHYPI---LFRGVN------------GTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYG 931 (985)
Q Consensus 867 Gl~~~~~~~~~~a~~l~~~L~~g~~l---~~~~~~------------~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~G 931 (985)
.+.+..++..++++++.+.|++...+ .++.-. ......+.+.++ + ..+++.+.|.++|
T Consensus 247 ~~~~~~~~~~~~~~~l~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~------~-~~~~~~~~l~~~g 319 (386)
T 1cs1_A 247 TLVPRMELAQRNAQAIVKYLQTQPLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFELD------G-DEQTLRRFLGGLS 319 (386)
T ss_dssp THHHHHHHHHHHHHHHHHHHTTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEES------S-CHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCeEEEECCCCCCCccHHHHHHhcCCCceEEEEEEC------C-CHHHHHHHHHhCC
Confidence 23444555667778888877652111 111100 001222345553 2 2678888898999
Q ss_pred CccCCCCC------------------C--------C-CCEEEEeccCCCCHHHHHHHHccCChhHH
Q 001989 932 FHGPTMSW------------------P--------V-PGTLMIEPTESESKSWTGIVMLSSPSEKK 970 (985)
Q Consensus 932 i~~~~~~~------------------p--------~-~~~lris~t~~~t~eeId~~~~~~~l~~~ 970 (985)
|.+....+ | + ++.+|++++..+++++|++ +.++|+++
T Consensus 320 i~~~~~~~g~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~~~~~~~~~i~~--l~~al~~~ 383 (386)
T 1cs1_A 320 LFTLAESLGGVESLISHAATMTHAGMAPEARAAAGISETLLRISTGIEDGEDLIAD--LENGFRAA 383 (386)
T ss_dssp SSEEBSCCCSSSCEEEEGGGTTTTTSCHHHHHHHTCCTTEEEEECCSSCHHHHHHH--HHHHHHHH
T ss_pred cceEcccCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEEccCCHHHHHHH--HHHHHHHh
Confidence 98652111 1 1 4799999999999999999 55555443
|
| >1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A {Escherichia coli} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.75 E-value=8.5e-17 Score=184.21 Aligned_cols=274 Identities=15% Similarity=0.087 Sum_probs=190.5
Q ss_pred HHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc---h
Q 001989 213 LLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL---K 289 (985)
Q Consensus 213 i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~---~ 289 (985)
..++++.+|+++|.+ +..++.+||.+++.++.++ . ++||+|+++...|+++...++..++..|++++.++. +
T Consensus 54 ~~~l~~~la~~~~~~--~~i~~~sGt~a~~~~~~~~-~--~~g~~vl~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~ 128 (386)
T 1cs1_A 54 RDVVQRALAELEGGA--GAVLTNTGMSAIHLVTTVF-L--KPGDLLVAPHDCYGGSYRLFDSLAKRGCYRVLFVDQGDEQ 128 (386)
T ss_dssp HHHHHHHHHHHHTCS--EEEEESSHHHHHHHHHHHH-C--CTTCEEEEETTCCHHHHHHHHHHHTTTSCEEEEECTTCHH
T ss_pred HHHHHHHHHHHhCCC--cEEEeCCHHHHHHHHHHHH-h--CCCCEEEEecCCcHhHHHHHHHHHHhcCCEEEEeCCCCHH
Confidence 456789999999987 3445566687666655543 2 378999999999999888887666778999999875 4
Q ss_pred hhhc-cCCCEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCCCCCcccceEEEecC-ccccccCCCC
Q 001989 290 DIDY-KSGDVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKPPGELGADIVVGSA-QRFGVPMGYG 366 (985)
Q Consensus 290 ~l~~-l~~~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~~~~~~GaDi~v~s~-k~lg~P~~~G 366 (985)
++++ +++++++|++++| |.+|.+.|+++|.++|+++|+++++| +.++.+....+.++|+|++++|. |.|++| |
T Consensus 129 ~l~~~i~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D-e~~~~~~~~~~~~~~~di~~~s~sK~~~~~---~ 204 (386)
T 1cs1_A 129 ALRAALAEKPKLVLVESPSNPLLRVVDIAKICHLAREVGAVSVVD-NTFLSPALQNPLALGADLVLHSCTKYLNGH---S 204 (386)
T ss_dssp HHHHHHHTCCSEEEEECSCTTTCCCCCHHHHHHHHHHTTCEEEEE-CTTTCTTTCCGGGGTCSEEEEETTTTTTCS---S
T ss_pred HHHHhhccCCcEEEEeCCCCCCCcccCHHHHHHHHHHcCCEEEEE-CCCcccccCCccccCceEEEEcCcccccCC---C
Confidence 5555 7778999999988 78999999999999999999999995 34554444445578999999998 777643 2
Q ss_pred CCcEEEEEEch-hhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcchHHH
Q 001989 367 GPHAAFLATSQ-EYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKT 445 (985)
Q Consensus 367 GP~~G~l~~~~-~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~ 445 (985)
++-+|++++++ ++.+.+.....+ ..++.| ++.+ .++. . +.+.+++
T Consensus 205 ~~~~G~~~~~~~~l~~~l~~~~~~------------------------~~~~~~-----~~~~-~~~~--~--~l~~~~~ 250 (386)
T 1cs1_A 205 DVVAGVVIAKDPDVVTELAWWANN------------------------IGVTGG-----AFDS-YLLL--R--GLRTLVP 250 (386)
T ss_dssp CCCCEEEEESSHHHHHHHHHHHHH------------------------HTCBCC-----HHHH-HHHH--H--HHTTHHH
T ss_pred CceeEEEEeCcHHHHHHHHHHHHh------------------------cCCCCC-----HHHH-HHHH--h--cccHHHH
Confidence 22238999886 666554111000 001111 1111 1111 1 1123556
Q ss_pred HHHHHHHHHHHHHHHHhcCCCeEEc--CC---------------CCcceEEEecCC-HHHHHHHHHHcCceeee------
Q 001989 446 IAQRVHGLAGTFALGLKKLGTVEVQ--GL---------------PFFDTVKVKCAD-AHAIASAAYKIEMNLRV------ 501 (985)
Q Consensus 446 i~~~~~~~a~~l~~~L~~~g~~~~~--~~---------------~~~~~~~~~~~~-~~~v~~~L~~~GI~~~~------ 501 (985)
..++..++.+++.+.|++++.+.-. .. .....+.|.+++ ..++.+.|.++||.++.
T Consensus 251 ~~~~~~~~~~~l~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~g~~ 330 (386)
T 1cs1_A 251 RMELAQRNAQAIVKYLQTQPLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFELDGDEQTLRRFLGGLSLFTLAESLGGV 330 (386)
T ss_dssp HHHHHHHHHHHHHHHHTTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEESSCHHHHHHHHHTCSSSEEBSCCCSS
T ss_pred HHHHHHHHHHHHHHHHhcCCCeEEEECCCCCCCccHHHHHHhcCCCceEEEEEECCCHHHHHHHHHhCCcceEcccCCCc
Confidence 6677788888999998887434321 11 013345666665 77888899889997752
Q ss_pred ------------------------ecCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 502 ------------------------VDSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 502 ------------------------~~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
..++.+|+|++..+++++|++|.++|..
T Consensus 331 ~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~~~~~~~~~i~~l~~al~~ 382 (386)
T 1cs1_A 331 ESLISHAATMTHAGMAPEARAAAGISETLLRISTGIEDGEDLIADLENGFRA 382 (386)
T ss_dssp SCEEEEGGGTTTTTSCHHHHHHHTCCTTEEEEECCSSCHHHHHHHHHHHHHH
T ss_pred ceeeecccccccccCCHHHHHhcCCCCCeEEEEEccCCHHHHHHHHHHHHHH
Confidence 1147899999999999999999999863
|
| >3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300} | Back alignment and structure |
|---|
Probab=99.75 E-value=9.4e-17 Score=185.95 Aligned_cols=300 Identities=12% Similarity=0.117 Sum_probs=186.6
Q ss_pred HHHHHHHHHHhCCCccceec-CcHHHHHHHHHHHHHHHHHhcCCCC---------CCEEEEcCCCCcccHHHHHHCCcEE
Q 001989 635 NNLGEWLCTITGFDSFSLQP-NAGAAGEYAGLMVIRAYHKARGDHH---------RNVCIIPVSAHGTNPATAAMCGMKI 704 (985)
Q Consensus 635 ~e~~~~la~l~G~~~~~~~~-~sGa~a~~a~l~air~~~~~~g~~~---------~~~IIv~~~~Hg~~~~~a~~~G~~v 704 (985)
.++++.++++++.+...+.. +++++++.. ..+++.+. . + .+ +++|+++.+.|..+...++..|+++
T Consensus 73 ~~lr~~ia~~~~~~~~~i~~t~G~~~al~~-~~~~~~l~-~-~-~~g~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~ 148 (423)
T 3ez1_A 73 PSARALFAGYLDVKAENVLVWNNSSLELQG-LVLTFALL-H-G-VRGSTGPWLSQTPKMIVTVPGYDRHFLLLQTLGFEL 148 (423)
T ss_dssp HHHHHHHHHHTTSCGGGEEECSSCHHHHHH-HHHHHHHH-T-C-CTTCSSCGGGGCCEEEEEESCCHHHHHHHHHHTCEE
T ss_pred HHHHHHHHHHhCCChhhEEEeCCcHHHHHH-HHHHHHHh-c-c-CCCccccccCCCCEEEEcCCCcHHHHHHHHHcCCEE
Confidence 46788899999988755544 444555530 02333322 1 0 03 5899998887766666778889999
Q ss_pred EEEcCCCCCCCCHHHHHHHHHhcCCCEEEEEEE-cC-CCccccccCHH---HHHHHH-HHcCCEEEEEccccc-ccc--C
Q 001989 705 VSVGTDAKGNINIEELRKAAEANRDNLSTLMVT-YP-STHGVYEEGID---EICKII-HDNGGQVYMDGANMN-AQV--G 775 (985)
Q Consensus 705 v~v~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~-~p-n~~G~i~~di~---eI~~la-~~~galliVD~a~~~-~~~--~ 775 (985)
+.+|++++| +|+++|++++++ .+++++|+++ +| |++|.+. +.+ +|+++| +++|+++|+|+++.. ... +
T Consensus 149 ~~v~~~~~g-~d~~~l~~~l~~-~~~~~~v~~~~~~~NPtG~~~-~~~~l~~l~~~a~~~~~~~li~De~y~~~~~~~~~ 225 (423)
T 3ez1_A 149 LTVDMQSDG-PDVDAVERLAGT-DPSVKGILFVPTYSNPGGETI-SLEKARRLAGLQAAAPDFTIFADDAYRVHHLVEED 225 (423)
T ss_dssp EEEEEETTE-ECHHHHHHHHHS-CTTEEEEEECSSSCTTTCCCC-CHHHHHHHHTCCCSSTTCEEEEECTTSSCBCCSSS
T ss_pred EeccCCCCC-CCHHHHHHHHhh-CCCceEEEECCCCCCCCCcCC-CHHHHHHHHHHHHhccCCEEEEECCcchhhcCCCC
Confidence 999997765 999999999952 1689988765 56 5799987 555 888888 899999999998852 111 1
Q ss_pred CCCC----------CccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCc
Q 001989 776 LTSP----------GYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAA 845 (985)
Q Consensus 776 l~~p----------g~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~ 845 (985)
...+ +..+.++++.|++|++ . +|.++|++++++++.+.+..... .. ..+.+
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~-~----~G~r~G~~~~~~~~~~~~~~~~~------------~~--~~~~~ 286 (423)
T 3ez1_A 226 RAEPVNFVVLARDAGYPDRAFVFASTSKIT-F----AGAGLGFVASSEDNIRWLSKYLG------------AQ--SIGPN 286 (423)
T ss_dssp CCCCCCHHHHHHHHTCTTSEEEEEESTTTS-C----SSSSCEEEEECHHHHHHHHHHHH------------HS--CSCCC
T ss_pred CCCCcchhhhhhccCCCCeEEEEeCchhhc-c----CCcceEEEEeCHHHHHHHHHHHh------------hh--ccCCC
Confidence 1111 1334678899999983 2 46789999998876654421100 00 11111
Q ss_pred chhhhHHHHHHHHHHHH-hc--HHHHHHHHHHHHHHHHHHHHHhhcc---CC--eeecCCCCceeeEEEEEecCccccCC
Q 001989 846 PWGSALILPISYTYIAM-MG--SKGLTEASKIAILNANYMAKRLEKH---YP--ILFRGVNGTVAHEFIVDLRGLKNTAG 917 (985)
Q Consensus 846 ~~g~~~~~~~a~a~l~~-lg--~eGl~~~~~~~~~~a~~l~~~L~~g---~~--l~~~~~~~~~~~~~iv~~~~~~~~~g 917 (985)
.....++.+++.. .+ .+.+++..+...++.+.+.+.|.+. .+ +.+..+.+..+ +.++++ +
T Consensus 287 ----~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~p~~g~~--~~~~~~------~ 354 (423)
T 3ez1_A 287 ----KVEQARHVKFLTEYPGGLEGLMRDHAAIIAPKFRAVDEVLRAELGEGGEYATWTLPKGGYF--ISLDTA------E 354 (423)
T ss_dssp ----HHHHHHHHHHHHHSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSSEEECCCSBSSC--EEEEES------S
T ss_pred ----HHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCCceEEeCCCccEE--EEEECC------C
Confidence 1112222333443 12 1223333333444555555555431 22 32222222222 345654 2
Q ss_pred CCHHHHHHHHHHCCCccCCC--CCC-----CCCEEEEeccCCCCHHHHHHHHccCChhHHHHhhc
Q 001989 918 IEPEDVAKRLMDYGFHGPTM--SWP-----VPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRLK 975 (985)
Q Consensus 918 ~~~~~v~~~L~~~Gi~~~~~--~~p-----~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~~ 975 (985)
.+...+.+.|.++||.+... .++ ..+++||++... +++||++ +++.|+++++++.
T Consensus 355 ~~~~~~~~~l~~~gv~v~~~g~~~~~~~~~~~~~iRis~~~~-~~~~i~~--~~~~l~~~l~~~~ 416 (423)
T 3ez1_A 355 PVADRVVKLAEAAGVSLTPAGATYPAGQDPHNRNLRLAPTRP-PVEEVRT--AMQVVAACIRLAT 416 (423)
T ss_dssp SCHHHHHHHHHHTTEECCCTTTTSSTTCCSSSCEEEECCSSS-CHHHHHH--HHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHCCcEEecCcccccCCCCCCCCeEEEEcCCC-CHHHHHH--HHHHHHHHHHHHH
Confidence 26788999999999987541 122 358999999765 9999999 8888988887654
|
| >3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple complex, schiff-base linkage, kynuren aminotransferase; HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A* 3ath_A* 3av7_A* 1x0m_A 1wst_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=3.4e-17 Score=191.61 Aligned_cols=305 Identities=12% Similarity=0.117 Sum_probs=192.9
Q ss_pred hhHHHHHHHHHHHHHHHhCC-Cccc-eecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEE
Q 001989 628 QGYQEMFNNLGEWLCTITGF-DSFS-LQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIV 705 (985)
Q Consensus 628 ~G~~~~~~e~~~~la~l~G~-~~~~-~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv 705 (985)
+|..++.+.+.+++.+.+|. +... ++.++|++|+..++.++. .++|+|+++.+.|..+...++..|++++
T Consensus 118 ~g~~~lr~~ia~~~~~~~g~~~~~~v~~t~G~~~al~~~~~~l~--------~~Gd~Vlv~~p~y~~~~~~~~~~g~~~~ 189 (448)
T 3aow_A 118 KGFTPLRETLMKWLGKRYGISQDNDIMITSGSQQALDLIGRVFL--------NPGDIVVVEAPTYLAALQAFNFYEPQYI 189 (448)
T ss_dssp TCCHHHHHHHHHHHHHHHCCCTTSEEEEESSHHHHHHHHHHHHC--------CTTCEEEEEESCCHHHHHHHHTTCCEEE
T ss_pred CCcHHHHHHHHHHHHHhcCcCChhhEEEeCcHHHHHHHHHHHHc--------CCCCEEEEeCCChHHHHHHHHHcCCEEE
Confidence 45444454455555444588 4433 455666666644444331 4678999988877666666778899999
Q ss_pred EEcCCCCCCCCHHHHHHHHHh---cCCCEEEEE-EEcC-CCcccccc--CHHHHHHHHHHcCCEEEEEccccccc-cC--
Q 001989 706 SVGTDAKGNINIEELRKAAEA---NRDNLSTLM-VTYP-STHGVYEE--GIDEICKIIHDNGGQVYMDGANMNAQ-VG-- 775 (985)
Q Consensus 706 ~v~~d~~g~iD~e~L~~~i~~---~~~~t~~Vv-v~~p-n~~G~i~~--di~eI~~la~~~galliVD~a~~~~~-~~-- 775 (985)
.+|.+++| +|+++|+++++. ..+++++|+ +.+| |++|.+.+ ++++|.++|+++|+++++|+++.... .+
T Consensus 190 ~v~~~~~g-~d~~~L~~~l~~~~~~~~~~k~v~~~~~~~NPtG~~~~~~~l~~i~~la~~~~~~lI~De~y~~~~~~g~~ 268 (448)
T 3aow_A 190 QIPLDDEG-MKVEILEEKLKELKSQGKKVKVVYTVPTFQNPAGVTMNEDRRKYLLELASEYDFIVVEDDPYGELRYSGNP 268 (448)
T ss_dssp EEEEETTE-ECHHHHHHHHHHHHHTTCCEEEEEECCSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECSCTTCBCSSCC
T ss_pred EeccCCCC-CCHHHHHHHHhhhhccCCCCeEEEECCCCCCCcCCCCCHHHHHHHHHHHHHcCCEEEEECCCccccCCCCC
Confidence 99987766 999999999961 113788875 5667 56898851 36799999999999999999985321 11
Q ss_pred CCCC---CccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHH
Q 001989 776 LTSP---GYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALI 852 (985)
Q Consensus 776 l~~p---g~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~ 852 (985)
.... ...+.++.+.+++|+|+ | |.++|++++++++.+.+...... . ..+++ ...
T Consensus 269 ~~~~~~~~~~~~vi~~~S~SK~~~-~----GlriG~v~~~~~l~~~l~~~~~~------------~--~~~~~----~~~ 325 (448)
T 3aow_A 269 EKKIKALDNEGRVIYLGTFSKILA-P----GFRIGWMVGDPGIIRKMEIAKQS------------T--DLCTN----VFG 325 (448)
T ss_dssp CCCTGGGCTTSCEEEEEESTTTTC-G----GGCCEEEEECHHHHHHHHHHHHH------------H--HSSCC----HHH
T ss_pred CcCHHhcCCCCCEEEEccchhhcc-c----cccEEEEEeCHHHHHHHHHHHHH------------h--cCCCC----HHH
Confidence 0111 12245788889999985 3 45689999998766544211000 0 01111 122
Q ss_pred HHHHHHHHHHhc-HHHHHHHHHHHHHHHHHHHHHhhccC--CeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHH
Q 001989 853 LPISYTYIAMMG-SKGLTEASKIAILNANYMAKRLEKHY--PILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMD 929 (985)
Q Consensus 853 ~~~a~a~l~~lg-~eGl~~~~~~~~~~a~~l~~~L~~g~--~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~ 929 (985)
..++.++|...+ .+.+.+..+...++++++.+.|++.+ .+.+..+.+..+ +.++++ .+.+..++.++|.+
T Consensus 326 q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~g~~~~~p~~g~~--~~v~~~-----~~~~~~~l~~~l~~ 398 (448)
T 3aow_A 326 QVVAWRYVDGGYLEKHIPEIRKFYKPRRDAMLEALEEFMPEGVKWTKPEGGMF--IWVTLP-----DGIDSKKMLERAIK 398 (448)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEECCCSBSSE--EEEECS-----TTCCHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEeCCCccEE--EEEEcC-----CCCCHHHHHHHHHH
Confidence 222334443211 23355555566778899999997632 232222222222 345654 24678899999999
Q ss_pred CCCccCCC-CC-C---CCCEEEEeccCCCCHHHHHHHHccCChhHHHHhh
Q 001989 930 YGFHGPTM-SW-P---VPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRL 974 (985)
Q Consensus 930 ~Gi~~~~~-~~-p---~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~ 974 (985)
+||.+... .| + ..+++|++++. .+++||++ +++.|++++++.
T Consensus 399 ~gV~v~pg~~f~~~~~~~~~iRls~~~-~~~e~i~~--~~~~L~~~l~~~ 445 (448)
T 3aow_A 399 KGVAYVPGEAFYAHRDVKNTMRLNFTY-VDEDKIME--GIKRLAETIKEE 445 (448)
T ss_dssp TTEECEEGGGGSTTCCCCSEEEEECSS-SCTHHHHH--HHHHHHHHHHHH
T ss_pred CCcEEEcchhhcCCCCCCCEEEEEeCC-CCHHHHHH--HHHHHHHHHHHH
Confidence 99986432 22 1 24789999986 48999999 788888887654
|
| >3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order transition, phosphate-loop, pyridoxal phospha selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A {Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=1.5e-16 Score=182.86 Aligned_cols=342 Identities=15% Similarity=0.138 Sum_probs=213.2
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhcCCCccc-eecCCCCCC-CCCcHHHHHHH-------HhCCccccccCCChhhHhhhHH
Q 001989 140 KFSKFDEGLTESQMIEHMQKLASMNKVYK-SFIGMGYYN-THVPPVILRNI-------MENPAWYTQYTPYQAEIAQGRL 210 (985)
Q Consensus 140 ~lp~~~~~~se~e~~~~~~~l~~~n~~~~-~~lG~g~y~-~~~p~~v~~~i-------~~~~~~~t~~~pyq~e~sqg~l 210 (985)
.+| .+++||.++...|.+++.++..+. .-.|.|-=. ...-+.+...- ....+|+++ .| ...-+.+..
T Consensus 22 ~~p--~~g~~~~~i~~~l~~~~~~d~~~~~~~~~~geregrv~~~~~~~r~~g~~hg~~~~~d~l~~-~~-~~~~~~~~~ 97 (450)
T 3bc8_A 22 KCP--EDGWDESTLELFLHELAVMDSNNFLGNCGVGEREGRVASALVARRHYRFIHGIGRSGDISAV-QP-KAAGSSLLN 97 (450)
T ss_dssp CCC--SSCCCHHHHHHHHHHHHHTBGGGCTTCCCCSSCCCCCSCHHHHHHTTTCCSCBCC--------CC-SBHHHHHHH
T ss_pred cCC--ccCCCHHHHHHHHHHHhhCCCCccccccccCcccceEecccccCCccceecchhHHHHHHHh-Cc-cccCCcHHH
Confidence 577 689999999999999998764421 112333111 11222221110 000134443 33 222344445
Q ss_pred HHHHHHHHHHHHhcCCCCcce-eeccchHHHHHHHHHHh-hhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc
Q 001989 211 ESLLNFQTMIADLTGLPMSNA-SLLDEGTAAAEAMAMCN-NIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL 288 (985)
Q Consensus 211 ~~i~e~q~~ia~L~g~~~~~~-sl~~~~ta~~ea~~~a~-~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~ 288 (985)
..-.++..++.+++|++.... .+++|+|+++.++.|+. +-...++++||+++++|.|+...+.. .|++.+++++
T Consensus 98 ~~e~~~~~~~~~~lGlp~~~~~~lV~GaT~~~~a~~L~aar~~~~~~~~viv~r~aHkSv~kAl~l----~Gl~p~~v~~ 173 (450)
T 3bc8_A 98 KITNSLVLNVIKLAGVHSVASCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSMVT----AGFEPVVIEN 173 (450)
T ss_dssp HHHHHHHHHHHHHHTCTTCCEEEEESSCHHHHHHHHHHHHHHHCTTCCEEEEECCCCHHHHHHHHH----TTCEEEEECC
T ss_pred HHHHHHHHHHHHhCCCCCCceEEEECCHHHHHHHHHHHHcchhhcCCCEEEEECCcHHHHHHHHHH----cCCeeEEEEe
Confidence 556667788899999987644 67788887777777643 32112378999999999999999863 5777777643
Q ss_pred -----------hhhhc-cC--C-CEeEEEEEcCCCCe--eeccHHHHHHHHHhCCcEEEEEecCccccCCC-----CC-C
Q 001989 289 -----------KDIDY-KS--G-DVCGVLVQYPGTEG--EVLDYGDFIKNAHANGVKVVMATDLLALTILK-----PP-G 345 (985)
Q Consensus 289 -----------~~l~~-l~--~-~t~~V~v~~pn~~G--~v~di~~I~~~a~~~galliV~a~~~~lg~l~-----~~-~ 345 (985)
++|++ |. + +..++++++|+++| .++||++|+++||++|++++||. ++|... -+ .
T Consensus 174 ~~~~~~~~id~~~le~aI~~~~~~~~~~Vv~t~t~~g~g~~ddl~~Ia~ia~~~gi~l~VD~---A~G~~~~~~~~l~~~ 250 (450)
T 3bc8_A 174 VLEGDELRTDLKAVEAKIQELGPEHILCLHSTTACFAPRVPDRLEELAVICANYDIPHVVNN---AYGLQSSKCMHLIQQ 250 (450)
T ss_dssp EEETTEEECCHHHHHHHHHHHCGGGEEEEEEESSCCTTBCCCCHHHHHHHHHHHTCCEEEEC---TTTTTCHHHHHHHHH
T ss_pred eecCccCCcCHHHHHHHHHhcCCCCEEEEEEECCcCCCceecCHHHHHHHHHHCCCeEEEEC---CCchhhhhhHhHHHH
Confidence 34555 42 2 45567777888877 88999999999999999999952 333211 01 1
Q ss_pred --cc-cceEEEecC-ccccccCCCCCCcEEEEEEch-hhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCc
Q 001989 346 --EL-GADIVVGSA-QRFGVPMGYGGPHAAFLATSQ-EYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNI 420 (985)
Q Consensus 346 --~~-GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~-~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni 420 (985)
+. |||+++.|. |+++.|.+ ++++.+++ ++++++.. . |. .+ +|
T Consensus 251 a~~~~~AD~~v~S~HK~l~a~~~-----~~~l~~rd~~~~~~~~~-------~------~~----------g~--~s--- 297 (450)
T 3bc8_A 251 GARVGRIDAFVQSLDKNFMVPVG-----GAIIAGFNEPFIQDISK-------M------YP----------GR--AS--- 297 (450)
T ss_dssp HHHHSCCCEEEEEHHHHHSCCSS-----CEEEEESCHHHHHHHHH-------H------SC----------SC--BC---
T ss_pred HhcccCCCEEEECCccCCCchhc-----cEEEEecCHHHHHHHHH-------H------hh----------cC--Cc---
Confidence 23 899999999 77777743 36777653 44433210 0 00 00 11
Q ss_pred cchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCC---CeEEcCCCCcc-eEEEec-------CC-HHHH
Q 001989 421 CTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLG---TVEVQGLPFFD-TVKVKC-------AD-AHAI 488 (985)
Q Consensus 421 ~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g---~~~~~~~~~~~-~~~~~~-------~~-~~~v 488 (985)
.++.+.+..++ ..+|.+|++++.++..+++++++++|+++. |+++++.+... ...+.. .. ..++
T Consensus 298 --~SpsL~l~~~l--~~~G~~g~~~~i~~~~~~a~~l~~~l~~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~~~~D~tkl 373 (450)
T 3bc8_A 298 --ASPSLDVLITL--LSLGCSGYRKLLKERKEMFVYLSTQLKKLAEAHNERLLQTPHNPISLAMTLKTIDGHHDKAVTQL 373 (450)
T ss_dssp --SHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCBCCCTTCSSEEEEECTTTSSSSSCHHHHH
T ss_pred --ccHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhcCceecCCccCCCcceeecccccccccCCCcee
Confidence 12233333333 345999999999999999999999998765 57777543221 233311 11 5566
Q ss_pred HHHHHHcCc---ee---------------------eeecCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 489 ASAAYKIEM---NL---------------------RVVDSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 489 ~~~L~~~GI---~~---------------------~~~~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
.-.+...|+ .+ +..+...+.+.++..+|++|+|+|+++|..
T Consensus 374 ~i~~~~~g~sG~~v~~~~~~~~~~~~~l~~~gi~~E~~~~~~i~~~~sig~~~~di~~l~~~L~~ 438 (450)
T 3bc8_A 374 GSMLFTRQVSGARAVPLGNVQTVSGHTFRGFMSHADNYPCAYLNAAAAIGMKMQDVDLFIKRLDK 438 (450)
T ss_dssp HHHHHHTTCCSCEEECSCCEEEETTEEEETTTTTSSCCSSCEEEEECCTTCCHHHHHHHHHHHHH
T ss_pred EEEecCCCCccceeeecccccchhHHHHHHcCCeeecCCCCcEEEEecCCCCHHHHHHHHHHHHH
Confidence 666665553 22 223357899999999999999999999984
|
| >3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=1.7e-17 Score=191.86 Aligned_cols=284 Identities=17% Similarity=0.225 Sum_probs=186.4
Q ss_pred HHHHHHHHHhC-CCCHHHhhhhcCCCccccCCCCCCCCCCCCCHHHHHHHHHHHhcCCCccceecCCCCCCCCCcHHHHH
Q 001989 108 EDQAKMSELVG-LDNLDSLIDATVPKSIRIDSMKFSKFDEGLTESQMIEHMQKLASMNKVYKSFIGMGYYNTHVPPVILR 186 (985)
Q Consensus 108 ~~~~~ml~~~g-~~~~~~l~~~~ip~~~~~~~~~lp~~~~~~se~e~~~~~~~l~~~n~~~~~~lG~g~y~~~~p~~v~~ 186 (985)
+|+++||+.+| .++++||+++ |+++++ ...+++..++..|.. .+. +
T Consensus 4 ~~~~~m~~~~~~~~~~~~~~~~-~~~~~~----------------~~~~~~~~~a~~n~~---------------~Vl-~ 50 (427)
T 3i16_A 4 ESTKQFLKKYNINDRVLKLYET-AMNDIQ----------------NQFKILDDIREFNQL---------------KVL-N 50 (427)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHH-HHHHTH----------------HHHHHHHHHHHHHHH---------------HHH-H
T ss_pred hHHHHHHHHcCCcHHHHHHHHH-HHHHHH----------------HHHHHHHHHHHhCHH---------------HHH-H
Confidence 78999999999 8899999986 766551 123445555554431 111 1
Q ss_pred HHHhC---CccccccCCCh-hhHhhhHHHHHHHHHHHHHHhcCCCCcceee---ccchHHHHHHHHHHhhhhcCCCCEEE
Q 001989 187 NIMEN---PAWYTQYTPYQ-AEIAQGRLESLLNFQTMIADLTGLPMSNASL---LDEGTAAAEAMAMCNNIQKGKKKTFI 259 (985)
Q Consensus 187 ~i~~~---~~~~t~~~pyq-~e~sqg~l~~i~e~q~~ia~L~g~~~~~~sl---~~~~ta~~ea~~~a~~~~~~~g~~Vl 259 (985)
++... ...+...+.|. ++. | ..++++.+|+++|++.+ .+ +.+||+++.+++.++ . ++||+||
T Consensus 51 A~~~~~~~~~~~~~~~gy~y~~~--~----~~~Le~~lA~l~g~e~a--lv~p~~~sGt~Ai~~al~al-l--~pGD~Vl 119 (427)
T 3i16_A 51 AFQEERISEAHFTNSSGYGYGDI--G----RDSLDAVYARVFNTESA--LVRPHFVNGTHALGAALFGN-L--RPGNTML 119 (427)
T ss_dssp HHHHTTCCGGGSCCCCTTCTTCH--H----HHHHHHHHHHHHTCSEE--EEETTCCSHHHHHHHHHHHH-C--CTTCEEE
T ss_pred HHHHhchhHHhcCCCCCCCCCHH--H----HHHHHHHHHHHhCCcce--EEeCCCccHHHHHHHHHHHH-h--CCCCEEE
Confidence 11110 00011111111 011 1 55677899999999875 34 688888777766654 2 3899999
Q ss_pred EcC-CCChhHHHHH-------HHhhcCCCeEEEEeCc--------hhhhc-cC--CCEeEEEEEc----C-CCCeeeccH
Q 001989 260 IAS-NCHPQTIDIC-------ITRADGFDIKVVVSDL--------KDIDY-KS--GDVCGVLVQY----P-GTEGEVLDY 315 (985)
Q Consensus 260 v~~-~~H~s~~~~~-------~~~a~~~gi~v~~v~~--------~~l~~-l~--~~t~~V~v~~----p-n~~G~v~di 315 (985)
+++ ..|+.....+ ...++..|++++.+|. +++++ ++ ++|++|++++ | |++|.+.|+
T Consensus 120 ~~~~~~y~~~~~~~g~~~~~~~~~l~~~G~~~~~v~~~~~g~~D~e~l~~~l~~~~~tklV~i~~s~~~p~nptg~i~dl 199 (427)
T 3i16_A 120 SVCGEPYDTLHDVIGITENSNMGSLKEFGINYKQVDLKEDGKPNLEEIEKVLKEDESITLVHIQRSTGYGWRRALLIEDI 199 (427)
T ss_dssp ESSSSCCGGGHHHHTCSCCCSSCCTGGGTCEEEECCCCTTSSCCHHHHHHHHHTCTTEEEEEEECSCCSSSSCCCCHHHH
T ss_pred EeCCCccHHHHHHHhccccchHHHHHHcCCEEEEecCccCCCcCHHHHHHHhhCCCCCEEEEEEcCCCCCCCCcccHHHH
Confidence 999 8998888666 1223457999999875 35555 66 7899999998 7 789999999
Q ss_pred HHHHHHHHh--CCcEEEEEecCccccC-CCCCCcccceEEEecC-ccccccCCCCCCcEEEEEEchhhHhcCCCceeeee
Q 001989 316 GDFIKNAHA--NGVKVVMATDLLALTI-LKPPGELGADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVS 391 (985)
Q Consensus 316 ~~I~~~a~~--~galliV~a~~~~lg~-l~~~~~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t 391 (985)
++|+++||+ +|++++|| +.++.+. ...|.++|+||+++|. |.|+++ |.|.+|++++++++++++..++.-
T Consensus 200 ~~i~~la~~~~~g~~livD-~a~~~~~~~~~p~~~gaDiv~~S~sK~lgg~---g~~~gG~i~~~~~li~~l~~~~~~-- 273 (427)
T 3i16_A 200 KSIVDCVKNIRKDIICFVD-NCYGEFMDTKEPTDVGADLIAGSLIKNIGGG---IAPTGGYLAGTKDCIEKTSYRLTV-- 273 (427)
T ss_dssp HHHHHHHHHHCTTSEEEEE-CTTTTTSSSSCGGGGTCSEEEEETTSGGGTT---TCCSCEEEEECHHHHHHHHHHHSC--
T ss_pred HHHHHHHHHhCCCCEEEEE-CCCccccccCCccccCCeEEEecCcccCCCC---CCceEEEEEECHHHHHHHHHhccc--
Confidence 999999999 99999995 4555555 4567789999999998 877642 226669999999888776321100
Q ss_pred ecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEc
Q 001989 392 IDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQ 470 (985)
Q Consensus 392 ~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~ 470 (985)
+ .-|. .++++ + . +.++.+.|.+-+..+.++..+++.++++.|+++| +++.
T Consensus 274 ------~---------------~~g~--~~~~~-~-~---~a~~~l~gl~~~~~r~~~~~~~a~~la~~L~~~g-~~V~ 323 (427)
T 3i16_A 274 ------P---------------GIGG--ECGST-F-G---VVRSMYQGLFLAPHISMEALKGAILCSRIMELAG-FEVM 323 (427)
T ss_dssp ------T---------------TTGG--GCCCC-T-T---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CEEE
T ss_pred ------C---------------ccCc--cCCcc-H-H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-Ceec
Confidence 0 0000 00000 0 0 0111222223345677888999999999999998 7775
|
| >2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.75 E-value=3.2e-17 Score=190.45 Aligned_cols=298 Identities=12% Similarity=0.072 Sum_probs=191.4
Q ss_pred HHHHHHHHHh-----CCCccc----eecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHH-CCcEEE
Q 001989 636 NLGEWLCTIT-----GFDSFS----LQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAM-CGMKIV 705 (985)
Q Consensus 636 e~~~~la~l~-----G~~~~~----~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~-~G~~vv 705 (985)
++++.+++++ +.+... ++.++|++|+..++.++. .++++|+++++.|..+...++. .|++++
T Consensus 92 ~lr~~ia~~~~~~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~--------~~gd~Vl~~~p~y~~~~~~~~~~~g~~~~ 163 (430)
T 2x5f_A 92 ELRDLWQQKMLRDNPELSIDNMSRPIVTNALTHGLSLVGDLFV--------NQDDTILLPEHNWGNYKLVFNTRNGANLQ 163 (430)
T ss_dssp HHHHHHHHHHHHHCTTCCGGGBCCCEEESHHHHHHHHHHHHHC--------CTTCEEEEESSCCTHHHHHHTTTTCCEEE
T ss_pred HHHHHHHHHHhccCcccCCCccceEEEcCCchHHHHHHHHHHh--------CCCCEEEEcCCcCccHHHHHHHhcCCeEE
Confidence 4556666666 666544 445556666644444331 3678999988877777777777 899999
Q ss_pred EEcCCC-CCCCCHHHHHHHHHhcCCCEEEEEEEcCC-CccccccC---HHHHHHHHHH-----cCCEEEEEcccccc-cc
Q 001989 706 SVGTDA-KGNINIEELRKAAEANRDNLSTLMVTYPS-THGVYEEG---IDEICKIIHD-----NGGQVYMDGANMNA-QV 774 (985)
Q Consensus 706 ~v~~d~-~g~iD~e~L~~~i~~~~~~t~~Vvv~~pn-~~G~i~~d---i~eI~~la~~-----~galliVD~a~~~~-~~ 774 (985)
.+|+++ ++.+|+++|++++++.+.++++|++++|+ ++|.+. + +++|.++|++ +|+++++|+++... ..
T Consensus 164 ~~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~i~~p~nptG~~~-~~~~l~~i~~~~~~~~~~~~~~~li~De~~~~~~~~ 242 (430)
T 2x5f_A 164 TYPIFDKDGHYTTDSLVEALQSYNKDKVIMILNYPNNPTGYTP-THKEVTTIVEAIKALANKGTKVIAVVDDAYYGLFYE 242 (430)
T ss_dssp EECCBCTTSCBCSHHHHHHHHHCCSSEEEEEECSSCTTTCCCC-CHHHHHHHHHHHHHHHHTTCEEEEEEECTTTTCBCS
T ss_pred EEeccCccCCcCHHHHHHHHHhcCCCCEEEEEcCCCCCCCCcC-CHHHHHHHHHHHHhhhhccCCEEEEEehhcccccCC
Confidence 999865 46799999999998433389999999994 689886 5 8999999999 99999999998521 11
Q ss_pred CCC-CC-C----c-cCC---cEEEeCCcccccccCCCCCCceEEEEE---cccccCcCCCCccccCCCCCCCCCCCCCCC
Q 001989 775 GLT-SP-G----Y-IGA---DVCHLNLHKTFCIPHGGGGPGMGPIGV---KKHLAPFLPSHPVVSTGGIPAPEKSQPLGT 841 (985)
Q Consensus 775 ~l~-~p-g----~-~g~---Di~~~s~hK~l~~p~g~GGPg~G~i~~---~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~ 841 (985)
+-. .+ . . .+. ++++.|+||+|+.| |.++|++++ ++++.+.+....... . +. .+.+
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~----G~riG~~~~~~~~~~~~~~l~~~~~~~-----~--~~-~~~~ 310 (430)
T 2x5f_A 243 DVYTQSLFTALTNLHSNAILPIRLDGATKEFFAW----GFRVGFMTFGTSDQTTKEVLEAKVKGL-----I--RS-NISS 310 (430)
T ss_dssp SSCCSCHHHHHHTTCCTTEEEEEEEEHHHHTTCG----GGCCEEEEEBCCCHHHHHHHHHHHHHH-----H--HT-TTSS
T ss_pred cccchHHHHHHhhccCCcceEEEEEecccCCCCC----CCCeEEEEEecCCHHHHHHHHHHHhhh-----h--hc-ccCC
Confidence 110 11 1 1 234 57788999998543 556899999 776654432110000 0 00 0111
Q ss_pred CCCcchhhhHHHHHHHHHHH-Hhc-HHHHHHHHHHHHHHHHHHHHHhhcc---CCeeecCCCCceeeEEEEEecCccccC
Q 001989 842 IAAAPWGSALILPISYTYIA-MMG-SKGLTEASKIAILNANYMAKRLEKH---YPILFRGVNGTVAHEFIVDLRGLKNTA 916 (985)
Q Consensus 842 i~s~~~g~~~~~~~a~a~l~-~lg-~eGl~~~~~~~~~~a~~l~~~L~~g---~~l~~~~~~~~~~~~~iv~~~~~~~~~ 916 (985)
. +.....++.++|. ... .+.+.+..++..++++++.+.|++. .++.+..+.+..+ +.+.++
T Consensus 311 ~------~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~~~~~~g~~--~~~~~~------ 376 (430)
T 2x5f_A 311 G------PLPTQSAVKHVLKNNKQFDKEIEQNIQTLKERYEVTKEVVYADQYHSHWQAYDFNSGYF--MAIKVH------ 376 (430)
T ss_dssp C------CHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHTCGGGTTTEEECCCCBSSE--EEEEES------
T ss_pred C------ChHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCceeeCCCceEE--EEeCCC------
Confidence 1 1122222233333 110 1223335666778889999999831 2333322222222 334543
Q ss_pred CCCHHHHHHHHHH-CCCccCCCCCCCCCEEEEeccCCCCHHHHHHHHccCChhHHHHhh
Q 001989 917 GIEPEDVAKRLMD-YGFHGPTMSWPVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRL 974 (985)
Q Consensus 917 g~~~~~v~~~L~~-~Gi~~~~~~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~ 974 (985)
+.+..++.++|.+ +||.+... ..+++||+++. .+++||++ +++.|+++++++
T Consensus 377 ~~~~~~~~~~l~~~~gi~v~~g---~~~~iRis~~~-~~~e~i~~--~~~~l~~~l~~~ 429 (430)
T 2x5f_A 377 DVDPEALRKHLIDKYSIGVIAL---NATDIRIAFSC-VEKDDIPH--VFDSIAKAIDDL 429 (430)
T ss_dssp SSCHHHHHHHHHHHHCEECEEC---SSSEEEEEGGG-SCGGGHHH--HHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCEEEecC---CCCeEEEEEec-CCHHHHHH--HHHHHHHHHHhc
Confidence 3578899999998 89987532 14789999986 59999999 888898888765
|
| >2c0r_A PSAT, phosphoserine aminotransferase; pyridoxal-5'-phosphate, pyridine serine biosynthesis, amino-acid biosynthesis, pyridoxal phosphate; HET: PLP; 1.2A {Bacillus circulans} SCOP: c.67.1.4 PDB: 1bt4_A* 1w3u_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=1.9e-16 Score=179.31 Aligned_cols=316 Identities=11% Similarity=0.038 Sum_probs=201.3
Q ss_pred ecCCCCCCCCCcHHHHHHHHhCC-ccccc------cCCChhhHhhhHHHHHHHHHHHHHHhcCCCCc-ce-eeccchHHH
Q 001989 170 FIGMGYYNTHVPPVILRNIMENP-AWYTQ------YTPYQAEIAQGRLESLLNFQTMIADLTGLPMS-NA-SLLDEGTAA 240 (985)
Q Consensus 170 ~lG~g~y~~~~p~~v~~~i~~~~-~~~t~------~~pyq~e~sqg~l~~i~e~q~~ia~L~g~~~~-~~-sl~~~~ta~ 240 (985)
++..|. ...|+.+.+++...- .|... ++.+ ..+..+.+.++++.+++++|++.. ++ .++.|+|.+
T Consensus 7 l~~~~~--~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~la~~~g~~~~~~~i~~t~g~t~a 80 (362)
T 2c0r_A 7 NFNAGP--AALPLEVLERAQAEFVDYQHTGMSIMEMSHR----GAVYEAVHNEAQARLLALLGNPTGYKVLFIQGGASTQ 80 (362)
T ss_dssp ECCSSS--CCCCHHHHHHHHHTSSSSTTSSSCGGGSCTT----SHHHHHHHHHHHHHHHHHTTCCSSEEEEEESSHHHHH
T ss_pred eccCCC--CCCCHHHHHHHHHHHhhhhhcCccccccCCC----cHHHHHHHHHHHHHHHHHhCCCCCcEEEEECCCchHH
Confidence 345553 457777766655432 11000 1111 234456778899999999999864 54 455888888
Q ss_pred HHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCch---------hhhc--cCCCEeEEEEEcC-CC
Q 001989 241 AEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDLK---------DIDY--KSGDVCGVLVQYP-GT 308 (985)
Q Consensus 241 ~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~~---------~l~~--l~~~t~~V~v~~p-n~ 308 (985)
+.+++.++. ++||+|++....|.+.. +...++..| +++.++.+ ++++ ++++|++|++++| |.
T Consensus 81 ~~~~~~~l~---~~gd~vl~~~~~~~~~~--~~~~~~~~g-~~~~v~~~~~~~~~~~~~~~~~~i~~~t~~v~~~~~~n~ 154 (362)
T 2c0r_A 81 FAMIPMNFL---KEGQTANYVMTGSWASK--ALKEAKLIG-DTHVAASSEASNYMTLPKLQEIQLQDNAAYLHLTSNETI 154 (362)
T ss_dssp HHHHHHHHC---CTTCEEEEEECSHHHHH--HHHHHHHHS-CEEEEEECGGGTTCSCCCGGGCCCCTTEEEEEEESEETT
T ss_pred HHHHHHhcC---CCCCeEEEEecCcHhHH--HHHHHHHhC-CeEEEecccccccccCCCHHHcccCCCcCEEEEeCCcCc
Confidence 877776652 38899988765544421 111122346 66665432 2222 5788999999987 78
Q ss_pred Ceee-ccHHHHHHHHHhCCcEEEEEecCccccCCC-CCCcccceEEEecC-ccccccCCCCCCcEEEEEEchhhHhcCCC
Q 001989 309 EGEV-LDYGDFIKNAHANGVKVVMATDLLALTILK-PPGELGADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPG 385 (985)
Q Consensus 309 ~G~v-~di~~I~~~a~~~galliV~a~~~~lg~l~-~~~~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~ 385 (985)
+|.+ .|+++| +|++++||. ..+.+... +..+ .|++++++ |+++ | +|+|++++++++++.+..
T Consensus 155 tG~~~~~l~~i------~~~~vivD~-a~~~~~~~~~~~~--~d~~~~s~~K~~g-~-----~G~G~l~~~~~~~~~l~~ 219 (362)
T 2c0r_A 155 EGAQFKAFPDT------GSVPLIGDM-SSDILSRPFDLNQ--FGLVYAGAQKNLG-P-----SGVTVVIVREDLVAESPK 219 (362)
T ss_dssp TTEECSSCCCC------TTSCEEEEC-TTTTTSSCCCGGG--CSEEEEETTTTTC-C-----SSCEEEEEEGGGSSSCCT
T ss_pred cceeccccccc------CCCEEEEEC-hhhccCCccchhH--CcEEEEecccccc-C-----cCcEEEEEcHHHHhhccc
Confidence 9995 888887 799999953 45555432 1223 49999998 6553 3 358999999988776632
Q ss_pred ceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcc-hHHHHHHHHHHHHHHHHHHHhcC
Q 001989 386 RIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPE-GLKTIAQRVHGLAGTFALGLKKL 464 (985)
Q Consensus 386 ~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~-Gl~~i~~~~~~~a~~l~~~L~~~ 464 (985)
.. + +.+++.. .+......+|.|. ....++.+++ .++..+ |++++.++..++++++++.|+++
T Consensus 220 ~~----------~-~~~~~~~-~~~~~~~~~t~~~---~~~~a~~~al--~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 282 (362)
T 2c0r_A 220 HL----------P-TMLRYDT-YVKNNSLYNTPPS---FGIYMVNEVL--KWIEERGGLEGVQQANRKKASLIYDAIDQS 282 (362)
T ss_dssp TS----------C-GGGCHHH-HHHTTTCSSCCCH---HHHHHHHHHH--HHHHHTTHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred cC----------c-hHHhHHH-HhhccCcCCCchH---HHHHHHHHHH--HHHHHhCCHHHHHHHHHHHHHHHHHHHHHc
Confidence 10 0 1111100 0000111244443 3344444444 444444 78999999999999999999998
Q ss_pred CCe-EEcCCC---CcceEEEecCC---HHHHHHHHHHcCceeeee--cCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 465 GTV-EVQGLP---FFDTVKVKCAD---AHAIASAAYKIEMNLRVV--DSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 465 g~~-~~~~~~---~~~~~~~~~~~---~~~v~~~L~~~GI~~~~~--~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
|++ ++..++ ....+.+..++ +.++.+.|.++||.+..- ..+.+|+|++.++|+||+++++++|++
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gi~~~~g~~~~~~iRis~~~~~~~e~i~~l~~~l~~ 356 (362)
T 2c0r_A 283 GGFYRGCVDVDSRSDMNITFRLASEELEKEFVKASEQEGFVGLKGHRSVGGLRASIYNAVPYESCEALVQFMEH 356 (362)
T ss_dssp TTSSEESSCGGGBCSSEEEEECSCHHHHHHHHHHHHHTTEESCBCCTTTCSEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCccccCCChHHcCCcEEEEEcCCcchHHHHHHHHHHCCCeeccCCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 645 775321 12245666653 788999999999976432 146799999999999999999999873
|
| >1w23_A Phosphoserine aminotransferase; pyridoxal-5'-phosphate; HET: PGE PLP EPE; 1.08A {Bacillus alcalophilus} SCOP: c.67.1.4 PDB: 2bhx_A* 2bi1_A* 2bi2_A* 2bi3_A* 2bi5_A* 2bi9_A* 2bia_A* 2bie_A* 2big_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=7.3e-18 Score=190.48 Aligned_cols=306 Identities=12% Similarity=0.049 Sum_probs=187.7
Q ss_pred hhHHHHHHHHHHHHHHHhCCCc-cc-eecCcH-HHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEE
Q 001989 628 QGYQEMFNNLGEWLCTITGFDS-FS-LQPNAG-AAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKI 704 (985)
Q Consensus 628 ~G~~~~~~e~~~~la~l~G~~~-~~-~~~~sG-a~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~v 704 (985)
++..+..+++++++++++|.+. .. ++.+++ ++|+.+++.++. .+| .++++|+++...|.. ...++..| ++
T Consensus 44 ~~~~~~~~~l~~~la~~~g~~~~~~v~~~~g~gt~al~~~~~~l~----~~~-~~g~~vi~~~~~~~~-~~~~~~~g-~~ 116 (360)
T 1w23_A 44 QSYEEVHEQAQNLLRELLQIPNDYQILFLQGGASLQFTMLPMNLL----TKG-TIGNYVLTGSWSEKA-LKEAKLLG-ET 116 (360)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHHHC----CTT-CEEEEEECSHHHHHH-HHHHHTTS-EE
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCceEEEECCcchHHHHHHHHHhc----CCC-CcccEEEecchhHHH-HHHHHHhC-Ce
Confidence 4566778899999999999863 23 333333 666654444331 112 235566666543322 12356679 99
Q ss_pred EEEcCCC-CCCCCHHHHHH-HHHhcCCCEEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCc
Q 001989 705 VSVGTDA-KGNINIEELRK-AAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGY 781 (985)
Q Consensus 705 v~v~~d~-~g~iD~e~L~~-~i~~~~~~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~ 781 (985)
+.+|+++ +|.+|+++|++ +++ ++|++|++++| |++|.+. | +|. +++|+++++|++|..+...+ ....
T Consensus 117 ~~v~~~~~~~~~d~~~l~~~~i~---~~~k~v~~~~~~nptG~~~-~--~i~---~~~~~~li~D~a~~~~~~~~-~~~~ 186 (360)
T 1w23_A 117 HIAASTKANSYQSIPDFSEFQLN---ENDAYLHITSNNTIYGTQY-Q--NFP---EINHAPLIADMSSDILSRPL-KVNQ 186 (360)
T ss_dssp EEEEECGGGTSCSCCCGGGCCCC---TTEEEEEEESEETTTTEEC-S--SCC---CCCSSCEEEECTTTTTSSCC-CGGG
T ss_pred EEeecccccCcCCccchHhhccC---CCCCEEEEeCCCCCcceec-c--ccc---ccCCceEEEechhhcCCCCc-Cccc
Confidence 9999875 67789999998 886 78999999997 5799986 3 333 38999999999986432211 1222
Q ss_pred cCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHH
Q 001989 782 IGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIA 861 (985)
Q Consensus 782 ~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~ 861 (985)
.|++++|+||+|+ ++|+|++++++++.+.+.... ++..+.............. +.....++.+.+.
T Consensus 187 --~di~~~s~sK~~~------~~G~G~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~al~ 252 (360)
T 1w23_A 187 --FGMIYAGAQKNLG------PSGVTVVIVKKDLLNTKVEQV-PTMLQYATHIKSDSLYNTP-----PTFSIYMLRNVLD 252 (360)
T ss_dssp --CSEEEEETTTTTS------CTTCEEEEEEHHHHCSCCTTC-CGGGCHHHHHHTTTCSSCC-----CHHHHHHHHHHHH
T ss_pred --CCEEEEEcccccC------CCCcEEEEEcHHHHhhcccCC-cchhhhhhhhhccCCCCCC-----CHHHHHHHHHHHH
Confidence 3999999999884 346899999987665553211 1100000000000000111 1111222234455
Q ss_pred HhcHH-HHHHHHHHHHHHHHHHHHHhhccCCe-eec-CCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCC
Q 001989 862 MMGSK-GLTEASKIAILNANYMAKRLEKHYPI-LFR-GVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMS 938 (985)
Q Consensus 862 ~lg~e-Gl~~~~~~~~~~a~~l~~~L~~g~~l-~~~-~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~ 938 (985)
.+..+ ++.++.++..++++++.+.|++...+ ... .+.......+.+.++. +.+..++.+.|.++||.+....
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~l~~~gi~~~~~~ 327 (360)
T 1w23_A 253 WIKDLGGAEAIAKQNEEKAKIIYDTIDESNGFYVGHAEKGSRSLMNVTFNLRN-----EELNQQFLAKAKEQGFVGLNGH 327 (360)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHHHHHHHTTTTSSEESSCGGGBCSSEEEEECSS-----HHHHHHHHHHHHHTTEESCBCC
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHHHHHHccCcccccCCchhccCcEEEEEcCC-----CccHHHHHHHHHHCCeeeecCC
Confidence 54444 67778888899999999999872112 111 1111111124455541 1235678889999999874322
Q ss_pred CCCCCEEEEeccCCCCHHHHHHHHccCChhHHHH
Q 001989 939 WPVPGTLMIEPTESESKSWTGIVMLSSPSEKKLH 972 (985)
Q Consensus 939 ~p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~ 972 (985)
+.++.+|++++..++++|+++ +++.|+++++
T Consensus 328 -~~~~~iRis~~~~~~~~~i~~--~~~~l~~~~~ 358 (360)
T 1w23_A 328 -RSVGGCRASIYNAVPIDACIA--LRELMIQFKE 358 (360)
T ss_dssp -TTTCSEEEECCTTSCHHHHHH--HHHHHHHHHH
T ss_pred -CCCCeEEEEecCCCCHHHHHH--HHHHHHHHHh
Confidence 124789999999999999999 7788887765
|
| >4e3q_A Pyruvate transaminase; aminotransferase, transferase; HET: PMP; 1.90A {Vibrio fluvialis} PDB: 4e3r_A* 3nui_A | Back alignment and structure |
|---|
Probab=99.75 E-value=5.5e-17 Score=189.80 Aligned_cols=341 Identities=18% Similarity=0.177 Sum_probs=210.9
Q ss_pred ccccccccCCCccccccccccccccccCCCCchhhhhhHHHHHHHHHHHHHHHhCCCc-cceecCcHHHHHHHHHHHHHH
Q 001989 592 IPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFDS-FSLQPNAGAAGEYAGLMVIRA 670 (985)
Q Consensus 592 ~~lG~~t~~~~~~~~~~~~~~~~f~~~~p~~p~e~~~G~~~~~~e~~~~la~l~G~~~-~~~~~~sGa~a~~a~l~air~ 670 (985)
..||++++.+..+...+......+.+++.+. .+...++.+.|+++++.+. ..++.+||++|++++++.+|.
T Consensus 79 ~~lGh~~p~v~~Ai~~q~~~l~~~~~~~~~~--------~~~~~~lAe~L~~~~p~~~~~v~f~~sGsEA~e~AiKlAr~ 150 (473)
T 4e3q_A 79 MVAGFDHKGLIDAAKAQYERFPGYHAFFGRM--------SDQTVMLSEKLVEVSPFDSGRVFYTNSGSEANDTMVKMLWF 150 (473)
T ss_dssp CTTCSCCHHHHHHHHHHHHHCCCCCCCTTEE--------EHHHHHHHHHHHHHSSCSSCEEEEESSHHHHHHHHHHHHHH
T ss_pred hhccCCCHHHHHHHHHHHHhccccccccccc--------CHHHHHHHHHHHhhCCCCccEEEEeCchHHHHHHHHHHHHH
Confidence 4567776666655444432222222211110 1223467888999986543 346789999999999999999
Q ss_pred HHHhcCCCCCCEEEE-cCCCCcccHHHHHHCC-----------cEEEEEcCC------CCCCC-------CHHHHHHHHH
Q 001989 671 YHKARGDHHRNVCII-PVSAHGTNPATAAMCG-----------MKIVSVGTD------AKGNI-------NIEELRKAAE 725 (985)
Q Consensus 671 ~~~~~g~~~~~~IIv-~~~~Hg~~~~~a~~~G-----------~~vv~v~~d------~~g~i-------D~e~L~~~i~ 725 (985)
|+..+|..++.+||. ...+||....++...| ..+..++.. ..+.. ..+++++.|.
T Consensus 151 ~~~~~g~~~r~~ii~~~~~yHG~t~~a~s~tg~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l~~~i~ 230 (473)
T 4e3q_A 151 LHAAEGKPQKRKILTRWNAYHGVTAVSASMTGKPYNSVFGLPLPGFVHLTCPHYWRYGEEGETEEQFVARLARELEETIQ 230 (473)
T ss_dssp HHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCGGGGGGTCSCTTEEEECCCCHHHHSCTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCCCCcceEEEeeceECCCccccccccccccccccCCCCCcccccCCCcccccccccchhhHHHHHHHHHHHHHHH
Confidence 887777656677776 6789998766643322 123334432 11221 1345666665
Q ss_pred hc-CCCEEEEEEEcC-CCcccccc---CHHHHHHHHHHcCCEEEEEccccccccCCCCCCccC--------CcEEEeCCc
Q 001989 726 AN-RDNLSTLMVTYP-STHGVYEE---GIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIG--------ADVCHLNLH 792 (985)
Q Consensus 726 ~~-~~~t~~Vvv~~p-n~~G~i~~---di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~g--------~Di~~~s~h 792 (985)
+. .+++++|+++-. ..-|++.+ -+++|.++|+++|++||+|+++ .|+.+.|.++ +|+++++
T Consensus 231 ~~~~~~iAavi~EPiqg~gG~~~p~~~fl~~lr~lc~~~gilLI~DEV~----tGfGRtG~~fa~e~~gv~PDi~t~~-- 304 (473)
T 4e3q_A 231 REGADTIAGFFAEPVMGAGGVIPPAKGYFQAILPILRKYDIPVISDEVI----CGFGRTGNTWGCVTYDFTPDAIISS-- 304 (473)
T ss_dssp HHCGGGEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCCEEEECTT----TSSSTTSSSCHHHHTTCCCSEEEEC--
T ss_pred hhCCCceEEEEeCCccCCCCceeCCHHHHHHHHHHhcccceEEeccCcc----ccCCcccchhHHHhcCCCCChHHhc--
Confidence 33 346777877642 34576653 3899999999999999999876 5666666543 7999774
Q ss_pred ccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHHHHHHH
Q 001989 793 KTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEAS 872 (985)
Q Consensus 793 K~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl~~~~ 872 (985)
|.++ +|+.-+|.+.+++++.+.+....... ......+++.|++++++++.+.|+.+.++++.+
T Consensus 305 K~l~----gG~~Pl~av~~~~~i~~~~~~~~~~~-----------~~~~hg~T~~Gnpla~Aaala~L~~i~~~~l~~-- 367 (473)
T 4e3q_A 305 KNLT----AGFFPMGAVILGPELSKRLETAIEAI-----------EEFPHGFTASGHPVGCAIALKAIDVVMNEGLAE-- 367 (473)
T ss_dssp GGGG----TTSSCCEEEEECHHHHHHHHHHHHHH-----------SCCCCCCTTTTCHHHHHHHHHHHHHHHHSSHHH--
T ss_pred cccc----CCCCCcccccccHHHHHHhccccccc-----------cccccCCCCCCCcchhhhhhhhhhhhccccHHH--
Confidence 7763 44345666777877654432110000 000112345678888888999999988877654
Q ss_pred HHHHHHHHHHHHHhhcc---CCee-ecCCCCceeeEEEEEecCc---ccc---CCCCHHHHHHHHHHCCCccCCCCCCCC
Q 001989 873 KIAILNANYMAKRLEKH---YPIL-FRGVNGTVAHEFIVDLRGL---KNT---AGIEPEDVAKRLMDYGFHGPTMSWPVP 942 (985)
Q Consensus 873 ~~~~~~a~~l~~~L~~g---~~l~-~~~~~~~~~~~~iv~~~~~---~~~---~g~~~~~v~~~L~~~Gi~~~~~~~p~~ 942 (985)
+..+...+|.++|++. ..+. +.+. +. + +.+++..- +.. ...-...+.+.+.++|+++... .
T Consensus 368 -~~~~~g~~l~~~L~~l~~~~~v~~vRG~-Gl-~--~gielv~~~~~~~~~~~~~~~~~~~~~~~~~~Gll~~~~----g 438 (473)
T 4e3q_A 368 -NVRRLAPRFEERLKHIAERPNIGEYRGI-GF-M--WALEAVKDKASKTPFDGNLSVSERIANTCTDLGLICRPL----G 438 (473)
T ss_dssp -HHHHHHHHHHHHHHHHTTSTTEEEEEEE-TT-E--EEEEECSBTTTTBCCCGGGCHHHHHHHHHHHTTEECEEE----T
T ss_pred -HHHHHHHHHHHHHHHHhcCCCeeEEeec-ce-E--EEEEEecCccccccccccHHHHHHHHHHHHHCCcEEEec----C
Confidence 5566788888888752 2221 1111 11 1 22332100 000 0011467889999999987543 4
Q ss_pred CEEEEeccCCCCHHHHHHHHccCChhHHHHhh
Q 001989 943 GTLMIEPTESESKSWTGIVMLSSPSEKKLHRL 974 (985)
Q Consensus 943 ~~lris~t~~~t~eeId~~~~~~~l~~~~~~~ 974 (985)
+.+|++|+...|++|||+ ++++++++++++
T Consensus 439 ~~i~l~PPL~it~~eid~--~~~~l~~al~~v 468 (473)
T 4e3q_A 439 QSVVLCPPFILTEAQMDE--MFDKLEKALDKV 468 (473)
T ss_dssp TEEEECCCTTCCHHHHHH--HHHHHHHHHHHH
T ss_pred CEEEEeCCCCCCHHHHHH--HHHHHHHHHHHH
Confidence 799999999999999999 778888887764
|
| >1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.75 E-value=1e-16 Score=183.40 Aligned_cols=300 Identities=12% Similarity=0.055 Sum_probs=188.7
Q ss_pred HHHHHHHHHHHHhC--CCccc-eecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcC
Q 001989 633 MFNNLGEWLCTITG--FDSFS-LQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGT 709 (985)
Q Consensus 633 ~~~e~~~~la~l~G--~~~~~-~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~ 709 (985)
+.+++.+++.+.+| .+... ++.++|++++..++.++. .++++|+++.+.|..+...++..|++++.+|+
T Consensus 69 lr~~la~~l~~~~g~~~~~~~v~~t~g~~~al~~~~~~l~--------~~gd~vl~~~p~y~~~~~~~~~~g~~~~~v~~ 140 (390)
T 1d2f_A 69 FLAAIAHWFSTQHYTAIDSQTVVYGPSVIYMVSELIRQWS--------ETGEGVVIHTPAYDAFYKAIEGNQRTVMPVAL 140 (390)
T ss_dssp HHHHHHHHHHHHSCCCCCGGGEEEESCHHHHHHHHHHHSS--------CTTCEEEEEESCCHHHHHHHHHTTCEEEEEEC
T ss_pred HHHHHHHHHHHhcCCCCCHHHEEEcCCHHHHHHHHHHHhc--------CCCCEEEEcCCCcHHHHHHHHHCCCEEEEeec
Confidence 34455555555567 44444 445566666644443321 36789999887776666667889999999998
Q ss_pred CCCC---CCCHHHHHHHHHhcCCCEEEEEEEcCC-Ccccccc--CHHHHHHHHHHcCCEEEEEccccccc-cC--CCCCC
Q 001989 710 DAKG---NINIEELRKAAEANRDNLSTLMVTYPS-THGVYEE--GIDEICKIIHDNGGQVYMDGANMNAQ-VG--LTSPG 780 (985)
Q Consensus 710 d~~g---~iD~e~L~~~i~~~~~~t~~Vvv~~pn-~~G~i~~--di~eI~~la~~~galliVD~a~~~~~-~~--l~~pg 780 (985)
++++ .+|+++|++++++ .++++|++++|+ ++|.+.+ ++++|+++|+++|+++|+|+++.... .+ +....
T Consensus 141 ~~~~~~~~~d~~~l~~~l~~--~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~ 218 (390)
T 1d2f_A 141 EKQADGWFCDMGKLEAVLAK--PECKIMLLCSPQNPTGKVWTCDELEIMADLCERHGVRVISDEIHMDMVWGEQPHIPWS 218 (390)
T ss_dssp EECSSSEECCHHHHHHHHTS--TTEEEEEEESSCTTTCCCCCTTHHHHHHHHHHHTTCEEEEECTTTTCBCSSSCCCCGG
T ss_pred ccCCCccccCHHHHHHHhcc--CCCeEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCcCHH
Confidence 6542 5899999999972 379999999985 6898862 38999999999999999999985311 11 11111
Q ss_pred ccC--C-cEEEeCCcccccccCCCCCCceEEEEEc-ccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHH
Q 001989 781 YIG--A-DVCHLNLHKTFCIPHGGGGPGMGPIGVK-KHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPIS 856 (985)
Q Consensus 781 ~~g--~-Di~~~s~hK~l~~p~g~GGPg~G~i~~~-~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a 856 (985)
.+. . |. +.|++|+|+.| |.++|+++++ +++.+.+.....+. ...++. +.....++
T Consensus 219 ~~~~~~~d~-~~s~sK~~~~~----G~r~G~~~~~~~~~~~~~~~~~~~~----------~~~~~~------~~~~~~a~ 277 (390)
T 1d2f_A 219 NVARGDWAL-LTSGSKSFNIP----ALTGAYGIIENSSSRDAYLSALKGR----------DGLSSP------SVLALTAH 277 (390)
T ss_dssp GTCCSSEEE-EECSHHHHTCG----GGCCEEEEECSHHHHHHHHHHHHTT----------SCCCSC------CHHHHHHH
T ss_pred HcchhhHhh-ccCccHhhccc----ChhheEEEECCHHHHHHHHHHHhhh----------cccCCC------CHHHHHHH
Confidence 122 2 67 88999999543 5568999985 55544332110000 000111 11222223
Q ss_pred HHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHH-HCCCcc
Q 001989 857 YTYIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLM-DYGFHG 934 (985)
Q Consensus 857 ~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~-~~Gi~~ 934 (985)
.+.+.. +.+.+.+..++..++++++.+.|++ ...+....+.+..+ +.++++. .+.+..++.+.|. ++||.+
T Consensus 278 ~~~l~~-~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~--~~~~~~~----~~~~~~~l~~~l~~~~gi~v 350 (390)
T 1d2f_A 278 IAAYQQ-GAPWLDALRIYLKDNLTYIADKMNAAFPELNWQIPQSTYL--AWLDLRP----LNIDDNALQKALIEQEKVAI 350 (390)
T ss_dssp HHHHHH-CHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCCCCCSBCSE--EEEECGG----GCCCHHHHHHHHHHTTCEEC
T ss_pred HHHHhc-CHHHHHHHHHHHHHHHHHHHHHHHhhCCCCEEecCCccEE--EEEEccc----cCCCHHHHHHHHHHHcCEEe
Confidence 333442 3455666677778888999999976 22222222222222 2356541 1256788999998 579987
Q ss_pred CCCC-CC--CCCEEEEeccCCCCHHHHHHHHccCChhHHHHhh
Q 001989 935 PTMS-WP--VPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRL 974 (985)
Q Consensus 935 ~~~~-~p--~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~ 974 (985)
.... +. .++++||+++. ++++|++ +++.|+++++++
T Consensus 351 ~~g~~f~~~~~~~~Ris~~~--~~~~l~~--~l~~l~~~l~~~ 389 (390)
T 1d2f_A 351 MPGYTYGEEGRGFVRLNAGC--PRSKLEK--GVAGLINAIRAV 389 (390)
T ss_dssp EEGGGGCGGGTTEEEEECCS--CHHHHHH--HHHHHHHHHHHH
T ss_pred eCccccCCCCCCeEEEEecC--CHHHHHH--HHHHHHHHHHhh
Confidence 5422 21 24799999986 5789999 778888887654
|
| >3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=2.4e-17 Score=190.61 Aligned_cols=260 Identities=13% Similarity=0.093 Sum_probs=176.0
Q ss_pred HHHHHHHHHHHhCCCcccee--cCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcC-CCCcccH-----------HHHHH
Q 001989 634 FNNLGEWLCTITGFDSFSLQ--PNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPV-SAHGTNP-----------ATAAM 699 (985)
Q Consensus 634 ~~e~~~~la~l~G~~~~~~~--~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~-~~Hg~~~-----------~~a~~ 699 (985)
..++++.+++++|.+.+.++ ++||++|+.+++.++. .++|+||+++ ..|+.+. ..++.
T Consensus 75 ~~~Le~~lA~l~g~e~alv~p~~~sGt~Ai~~al~all--------~pGD~Vl~~~~~~y~~~~~~~g~~~~~~~~~l~~ 146 (427)
T 3i16_A 75 RDSLDAVYARVFNTESALVRPHFVNGTHALGAALFGNL--------RPGNTMLSVCGEPYDTLHDVIGITENSNMGSLKE 146 (427)
T ss_dssp HHHHHHHHHHHHTCSEEEEETTCCSHHHHHHHHHHHHC--------CTTCEEEESSSSCCGGGHHHHTCSCCCSSCCTGG
T ss_pred HHHHHHHHHHHhCCcceEEeCCCccHHHHHHHHHHHHh--------CCCCEEEEeCCCccHHHHHHHhccccchHHHHHH
Confidence 55788899999999887553 6788887755544431 4789999987 7676554 23456
Q ss_pred CCcEEEEEcCCCCCCCCHHHHHHHHHhcCCCEEEEEEEc----C-CCccccccCHHHHHHHHHH--cCCEEEEEcccccc
Q 001989 700 CGMKIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTY----P-STHGVYEEGIDEICKIIHD--NGGQVYMDGANMNA 772 (985)
Q Consensus 700 ~G~~vv~v~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~----p-n~~G~i~~di~eI~~la~~--~galliVD~a~~~~ 772 (985)
.|++++.+|.+++|.+|+++|+++++++ ++|++|++++ | |.+|.+. |+++|+++||+ +|++++||+++...
T Consensus 147 ~G~~~~~v~~~~~g~~D~e~l~~~l~~~-~~tklV~i~~s~~~p~nptg~i~-dl~~i~~la~~~~~g~~livD~a~~~~ 224 (427)
T 3i16_A 147 FGINYKQVDLKEDGKPNLEEIEKVLKED-ESITLVHIQRSTGYGWRRALLIE-DIKSIVDCVKNIRKDIICFVDNCYGEF 224 (427)
T ss_dssp GTCEEEECCCCTTSSCCHHHHHHHHHTC-TTEEEEEEECSCCSSSSCCCCHH-HHHHHHHHHHHHCTTSEEEEECTTTTT
T ss_pred cCCEEEEecCccCCCcCHHHHHHHhhCC-CCCEEEEEEcCCCCCCCCcccHH-HHHHHHHHHHHhCCCCEEEEECCCccc
Confidence 7999999999888999999999999732 5799999998 8 4689998 89999999999 99999999998532
Q ss_pred ccCCCCCCccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHH
Q 001989 773 QVGLTSPGYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALI 852 (985)
Q Consensus 773 ~~~l~~pg~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~ 852 (985)
.. ...|..+|+|++++|+||+|+.+ |.|.+|++++++++.+.+..+.. ....+...+..++
T Consensus 225 ~~-~~~p~~~gaDiv~~S~sK~lgg~---g~~~gG~i~~~~~li~~l~~~~~-----------~~~~g~~~~~~~~---- 285 (427)
T 3i16_A 225 MD-TKEPTDVGADLIAGSLIKNIGGG---IAPTGGYLAGTKDCIEKTSYRLT-----------VPGIGGECGSTFG---- 285 (427)
T ss_dssp SS-SSCGGGGTCSEEEEETTSGGGTT---TCCSCEEEEECHHHHHHHHHHHS-----------CTTTGGGCCCCTT----
T ss_pred cc-cCCccccCCeEEEecCcccCCCC---CCceEEEEEECHHHHHHHHHhcc-----------cCccCccCCccHH----
Confidence 21 24566789999999999998521 22778999999877665432110 0011111110011
Q ss_pred HHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeE--EEEEecCccccCCCCHHHHHHHHHH
Q 001989 853 LPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHE--FIVDLRGLKNTAGIEPEDVAKRLMD 929 (985)
Q Consensus 853 ~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~--~iv~~~~~~~~~g~~~~~v~~~L~~ 929 (985)
.+|..+. |.+.+..+.++..+++.++++.|++ ++.+ ++++ ....+. +.|.+.. ......+++.|..
T Consensus 286 --~a~~~l~--gl~~~~~r~~~~~~~a~~la~~L~~~g~~V-~p~~-~~~~~~~i~~i~l~~-----~~~~~~f~~~l~~ 354 (427)
T 3i16_A 286 --VVRSMYQ--GLFLAPHISMEALKGAILCSRIMELAGFEV-MPKY-DEKRSDIIQSIKFND-----KDKLIEFCKGIQT 354 (427)
T ss_dssp --CHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHTTCEE-ESCT-TSCCSSSCEEEECSS-----HHHHHHHHHHHHH
T ss_pred --HHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCCCee-cCCC-CCCCccEEEEEEECC-----HHHHHHHHHHHhh
Confidence 0223332 2233456677889999999999987 6665 5442 221122 2333321 1235678888888
Q ss_pred CCCc
Q 001989 930 YGFH 933 (985)
Q Consensus 930 ~Gi~ 933 (985)
....
T Consensus 355 ~~~~ 358 (427)
T 3i16_A 355 GSPI 358 (427)
T ss_dssp TCSS
T ss_pred cCcc
Confidence 6443
|
| >1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.35A {Thermus thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=1.1e-16 Score=183.69 Aligned_cols=280 Identities=15% Similarity=0.137 Sum_probs=181.9
Q ss_pred HHHHHHHHHHHHhCCCcc-ceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcC-CCCcccHHHHHHCCcE-------
Q 001989 633 MFNNLGEWLCTITGFDSF-SLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPV-SAHGTNPATAAMCGMK------- 703 (985)
Q Consensus 633 ~~~e~~~~la~l~G~~~~-~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~-~~Hg~~~~~a~~~G~~------- 703 (985)
...++++.+++++|.+.. .++.++|++|+..++.+++.+. ++++||+++ .+|+.........|.+
T Consensus 88 ~~~~l~~~la~~~~~~~~~v~~~~gg~~a~~~al~~~~~~~------~~~~vi~~~~~y~~~~~~~~~~~g~~~~~~~~~ 161 (395)
T 1vef_A 88 MRGEFYRTLTAILPPELNRVFPVNSGTEANEAALKFARAHT------GRKKFVAAMRGFSGRTMGSLSVTWEPKYREPFL 161 (395)
T ss_dssp HHHHHHHHHHHTSCTTEEEEEEESSHHHHHHHHHHHHHHHH------SCCEEEEETTCCCCSSHHHHHTCCCHHHHGGGC
T ss_pred HHHHHHHHHHHhcCCCcCEEEEcCcHHHHHHHHHHHHHHHh------CCCeEEEEcCCcCCCchhhhhhcCCcccccccC
Confidence 456889999999976543 3556788888876666554321 456777754 5677776666655654
Q ss_pred -----EEEEcCCCCCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccC----HHHHHHHHHHcCCEEEEEccccccc
Q 001989 704 -----IVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEG----IDEICKIIHDNGGQVYMDGANMNAQ 773 (985)
Q Consensus 704 -----vv~v~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~d----i~eI~~la~~~galliVD~a~~~~~ 773 (985)
+..++. .|+++|+++++ +++++|+++.+ |.+|.+. | +++|.++|+++|+++|+|++|. ++
T Consensus 162 p~~~~~~~~~~-----~d~~~l~~~i~---~~~~~v~~~~~~~~tG~~~-~~~~~l~~i~~l~~~~~~~li~Dea~~-~~ 231 (395)
T 1vef_A 162 PLVEPVEFIPY-----NDVEALKRAVD---EETAAVILEPVQGEGGVRP-ATPEFLRAAREITQEKGALLILDEIQT-GM 231 (395)
T ss_dssp SCSSCEEEECT-----TCHHHHHHHCC---TTEEEEEECSEETTTTSEE-CCHHHHHHHHHHHHHHTCEEEEECTTT-TT
T ss_pred CCCCCeeEeCC-----CcHHHHHHHhc---cCEEEEEEeCccCCCCccC-CCHHHHHHHHHHHHHcCCEEEEEeccc-CC
Confidence 444443 48999999997 78988887654 4589876 6 9999999999999999999985 33
Q ss_pred cCCCCC-----CccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchh
Q 001989 774 VGLTSP-----GYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWG 848 (985)
Q Consensus 774 ~~l~~p-----g~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g 848 (985)
+....+ ...++|+++ +||+|+ +|.++|++++++++.+.+..... ..+.+.
T Consensus 232 ~~~g~~~~~~~~~~~~d~~s--~sK~~~-----~g~~~G~~~~~~~~~~~l~~~~~--------------~~~~~~---- 286 (395)
T 1vef_A 232 GRTGKRFAFEHFGIVPDILT--LAKALG-----GGVPLGVAVMREEVARSMPKGGH--------------GTTFGG---- 286 (395)
T ss_dssp TTTSSSSTHHHHTCCCSEEE--ECGGGG-----TTSSCEEEEEEHHHHHTSCTTSS--------------CCSSTT----
T ss_pred ccCCchhHhhhcCCCCCEEE--Eccccc-----CCCceEEEEehHHHHhhhccCCc--------------CCCcCC----
Confidence 211111 123478874 489985 35688999998776655532100 011111
Q ss_pred hhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeee-cCCCCceeeEEEEEecCccccCCCCHHHHHHH
Q 001989 849 SALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILF-RGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKR 926 (985)
Q Consensus 849 ~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~-~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~ 926 (985)
+...+.++.+.+..+..+ +..++..++++++.++|++ +.++.. ..+.+. .+.+.++ + +..++.+.
T Consensus 287 ~~~~~~a~~~al~~~~~~---~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~g~---~~~~~~~------~-~~~~l~~~ 353 (395)
T 1vef_A 287 NPLAMAAGVAAIRYLERT---RLWERAAELGPWFMEKLRAIPSPKIREVRGMGL---MVGLELK------E-KAAPYIAR 353 (395)
T ss_dssp CHHHHHHHHHHHHHHHHH---TTHHHHHHHHHHHHHHHHTSCCTTEEEEEEETT---EEEEEES------S-CSHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHHhhcCceEEEEEEEE---EEEEEEc------C-hHHHHHHH
Confidence 223333344555554432 3445677888999999976 322211 111111 2345554 1 35789999
Q ss_pred HH-HCCCccCCCCCCCCCEEEEeccCCCCHHHHHHHHccCChhHHH
Q 001989 927 LM-DYGFHGPTMSWPVPGTLMIEPTESESKSWTGIVMLSSPSEKKL 971 (985)
Q Consensus 927 L~-~~Gi~~~~~~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~~ 971 (985)
|. ++||.+.... .+.+||+++..++++|+++ +++.|++++
T Consensus 354 l~~~~gi~v~~~~---~~~iRi~~~~~~~~~~i~~--~~~~l~~~l 394 (395)
T 1vef_A 354 LEKEHRVLALQAG---PTVIRFLPPLVIEKEDLER--VVEAVRAVL 394 (395)
T ss_dssp HHHHHCEECEESS---TTEEEECCCTTCCHHHHHH--HHHHHHHHH
T ss_pred HHHHCCeEEecCC---CCEEEEeCCCCCCHHHHHH--HHHHHHHHh
Confidence 99 8999875432 4799999999999999999 777777654
|
| >4atq_A 4-aminobutyrate transaminase; transferase; HET: PLP; 2.75A {Arthrobacter aurescens} PDB: 4atp_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=1.3e-16 Score=185.92 Aligned_cols=294 Identities=15% Similarity=0.134 Sum_probs=188.3
Q ss_pred HHHHHHHHHHhCCCc--cceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEE-cCCCCcccHHHHHHC-----------
Q 001989 635 NNLGEWLCTITGFDS--FSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCII-PVSAHGTNPATAAMC----------- 700 (985)
Q Consensus 635 ~e~~~~la~l~G~~~--~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv-~~~~Hg~~~~~a~~~----------- 700 (985)
.++.+.|++++..+. ..++.+||++|++++++.+|.|. ++.+||. ...+||....+....
T Consensus 110 ~~lae~L~~~~p~~~~~~v~f~~sGsEA~e~AlklAr~~t------~r~~ii~~~~~yHG~t~~als~t~~~~~~~~~~~ 183 (456)
T 4atq_A 110 VAVTEQLNRLTPGDHAKRTVLFNSGAEAVENAVKVARLAT------GRDAVVAFDHAYHGRTNLTMALTAKAMPYKTNFG 183 (456)
T ss_dssp HHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHHHHHH------CCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTSC
T ss_pred HHHHHHHHHhCCCCCCcEEEEeCChHHHHHHHHHHHhhhh------cCCeEEEEecccCCccccccccccCccccccCCC
Confidence 367788888885432 34677999999999999998763 4567776 678999886654321
Q ss_pred --CcEEEEEcCCC------CCCCCHHHHHHHHHh-----cCCCEEEEEEEcC-CCcccccc---CHHHHHHHHHHcCCEE
Q 001989 701 --GMKIVSVGTDA------KGNINIEELRKAAEA-----NRDNLSTLMVTYP-STHGVYEE---GIDEICKIIHDNGGQV 763 (985)
Q Consensus 701 --G~~vv~v~~d~------~g~iD~e~L~~~i~~-----~~~~t~~Vvv~~p-n~~G~i~~---di~eI~~la~~~gall 763 (985)
.-.+..+|... ....+.+.+++.++. ..+++++|+++-- ...|++.+ -+++|.++|+++|+++
T Consensus 184 p~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~iAAvivEPiqg~gG~~~p~~~fl~~lr~lc~~~gill 263 (456)
T 4atq_A 184 PFAPEVYRMPMSYPFREENPEITGAEAAKRAITMIEKQIGGDQVAAIIIEPIQGEGGFIVPAEGFLPALSEWAKEKGIVF 263 (456)
T ss_dssp SCCSSEEEECCCCGGGCSSTTCCHHHHHHHHHHHHHHHTCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHHTCEE
T ss_pred CccccceecccccccccCCCcccHHHHHHHHHHHHHHhhcCCceEEEEeccccCCCCccccchhhhHHHHHHHhhcCCce
Confidence 12455666531 122345555555431 2357888888642 34566642 3899999999999999
Q ss_pred EEEccccccccCCCCCCccC--------CcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCC
Q 001989 764 YMDGANMNAQVGLTSPGYIG--------ADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEK 835 (985)
Q Consensus 764 iVD~a~~~~~~~l~~pg~~g--------~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~ 835 (985)
|+|+++ .|+.+.|.++ +|+++++ |.+ ++|.| +|.+.+++++.+.+...
T Consensus 264 I~DEV~----tG~GRtG~~~a~e~~gv~PDivt~g--K~l----ggg~P-~~av~~~~~i~~~~~~~------------- 319 (456)
T 4atq_A 264 IADEVQ----SGFCRTGEWFAVDHEGVVPDIITMA--KGI----AGGLP-LSAITGRADLLDAVHPG------------- 319 (456)
T ss_dssp EEECTT----TTTTTTSSSSGGGGTTCCCSEEEEC--GGG----GTTSS-CEEEEEEHHHHTTSCTT-------------
T ss_pred Eecccc----cccCCccccccccccCCCCchhhhh--hcc----cCcCC-ceeeEecHHHHhccccc-------------
Confidence 999886 4555565443 7999875 766 34445 55566677766544321
Q ss_pred CCCCCCCCCcchhhhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhcc---CC-----ee--ecCCCCceeeEE
Q 001989 836 SQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKH---YP-----IL--FRGVNGTVAHEF 905 (985)
Q Consensus 836 ~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~g---~~-----l~--~~~~~~~~~~~~ 905 (985)
...+++.|+++.++++.+.|..+..+++.+ +..+..+++.++|++. +. ++ +.+. + .+ +
T Consensus 320 -----~~~~Tf~gnpla~aaala~L~~i~~~~l~~---~~~~~g~~l~~~L~~l~~~~~~~~~~~v~~VRG~-G-l~--~ 387 (456)
T 4atq_A 320 -----GLGGTYGGNPVACAAALAAIDTMEQHDLNG---RARHIEELALGKLRELAAELSAGGGSVVGDIRGR-G-AM--L 387 (456)
T ss_dssp -----SSCCSSSSCHHHHHHHHHHHHHHHHTTHHH---HHHHHHHHHHHHHHHHHHHCC-----CEEEEEEE-T-TE--E
T ss_pred -----CCCCCCCCChHHHHhhHHHHHHHhhccHHH---HHHHHHHHHHHHHHHHHHhcccccCCceEEeeec-c-eE--E
Confidence 012345678888888999999998877654 4556677777777641 11 11 0111 1 11 2
Q ss_pred EEEecCcc--ccCCCCHHHHHHHHHHCCCccCCCCCCCCCEEEEeccCCCCHHHHHHHHccCChhHHHHh
Q 001989 906 IVDLRGLK--NTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHR 973 (985)
Q Consensus 906 iv~~~~~~--~~~g~~~~~v~~~L~~~Gi~~~~~~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~ 973 (985)
-+++..-. .........+.++|.++|+++..+. +..+.||++|+...|++|||+ ++++|+++++.
T Consensus 388 giel~~~~~~~~~~~~~~~v~~~~~~~Gvl~~~~g-~~~~~irl~PpL~it~~~id~--~l~~l~~al~a 454 (456)
T 4atq_A 388 AIELVQPGSKEPNAELTKAVAAACLKEGVIILTCG-TYGNVIRLLPPLVISDELLID--GLEVLAAAIKA 454 (456)
T ss_dssp EEEEBCTTSCCBCHHHHHHHHHHHHHTTEECEEEC-TTSCEEEECCCTTCCHHHHHH--HHHHHHHHHHH
T ss_pred EEEEecCCCCCcCHHHHHHHHHHHHHCCCEEEecC-CCCCEEEEECCCCCCHHHHHH--HHHHHHHHHHh
Confidence 23332100 0000014568888999999875432 224899999999999999999 78888888763
|
| >4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase fold type I; HET: TA8; 1.35A {Chromobacterium violaceum} PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=1.6e-16 Score=186.41 Aligned_cols=302 Identities=16% Similarity=0.147 Sum_probs=189.2
Q ss_pred HHHHHHHHHHHHHhCCCc-cceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEE-cCCCCcccHHHHHHCC--------
Q 001989 632 EMFNNLGEWLCTITGFDS-FSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCII-PVSAHGTNPATAAMCG-------- 701 (985)
Q Consensus 632 ~~~~e~~~~la~l~G~~~-~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv-~~~~Hg~~~~~a~~~G-------- 701 (985)
+...+++++++++++.+. ..++.+||++|+++++++++.+...+|..++++||+ ...+||.........|
T Consensus 94 ~~~~~la~~l~~~~~~~~~~v~~~~ggseA~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~ 173 (459)
T 4a6r_A 94 PAVVELSSLLAEVTPAGFDRVFYTNSGSESVDTMIRMVRRYWDVQGKPEKKTLIGRWNGYHGSTIGGASLGGMKYMHEQG 173 (459)
T ss_dssp HHHHHHHHHHHHHSCTTCCEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCTTTC---
T ss_pred HHHHHHHHHHHHhCCCCCCEEEEeCchHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCccHHHHhhcCChhhcccc
Confidence 345688899999987644 346678999999999998887766666445678877 5678887655543322
Q ss_pred ----cEEEEEcCCC-----CCCCC--------HHHHHHHHHhcC-CCEEEEEEEcCC-CccccccC----HHHHHHHHHH
Q 001989 702 ----MKIVSVGTDA-----KGNIN--------IEELRKAAEANR-DNLSTLMVTYPS-THGVYEEG----IDEICKIIHD 758 (985)
Q Consensus 702 ----~~vv~v~~d~-----~g~iD--------~e~L~~~i~~~~-~~t~~Vvv~~pn-~~G~i~~d----i~eI~~la~~ 758 (985)
..+..++... +. .| +++|++++++.. +++++|+++.++ +.|.+. + +++|.++|++
T Consensus 174 ~~~~~~~~~~~~p~~~~~~~~-~d~~~~~~~~~~~le~~i~~~~~~~~~~vi~ep~~~~~G~~~-~~~~~l~~l~~l~~~ 251 (459)
T 4a6r_A 174 DLPIPGMAHIEQPWWYKHGKD-MTPDEFGVVAARWLEEKILEIGADKVAAFVGEPIQGAGGVIV-PPATYWPEIERICRK 251 (459)
T ss_dssp CCSCSSEEEECCCCHHHHCTT-CCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBTTTTCBC-CCTTHHHHHHHHHHH
T ss_pred CCCCCCCEEeCCCccccCCcc-cCHHHHHHHHHHHHHHHHHHcCCCCEEEEEECCccCCCCccc-CCHHHHHHHHHHHHH
Confidence 1344455321 12 45 889999987432 356666665443 466665 4 9999999999
Q ss_pred cCCEEEEEccccccccCCCCCCc--------cCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCC--CccccCC
Q 001989 759 NGGQVYMDGANMNAQVGLTSPGY--------IGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPS--HPVVSTG 828 (985)
Q Consensus 759 ~galliVD~a~~~~~~~l~~pg~--------~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~--~~~g~~~ 828 (985)
+|+++|+|+++. ++.+.|. ..+|++++| |+++ +||.++|++++++++.+.+.. ...
T Consensus 252 ~~~llI~DEv~~----g~gr~G~~~~~~~~~~~pdi~t~s--K~l~----gg~~~lg~v~~~~~i~~~~~~~~~~~---- 317 (459)
T 4a6r_A 252 YDVLLVADEVIC----GFGRTGEWFGHQHFGFQPDLFTAA--KGLS----SGYLPIGAVFVGKRVAEGLIAGGDFN---- 317 (459)
T ss_dssp TTCEEEEECTTT----TTTTTSSSSHHHHHTCCCSEEEEC--GGGG----TTSSCCEEEEECHHHHHHHHHHCTTH----
T ss_pred cCCEEEEecccc----CCCcccccchHhhcCCCCCeeehh--hhhc----CCCCCccceeeCHHHHHHhhcCCCcc----
Confidence 999999999874 2222322 236888764 8863 355788999999877654421 100
Q ss_pred CCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHHHHHHHHHHH-HHHHHHHHHh-hc--cCC-ee-ecCCCCcee
Q 001989 829 GIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAI-LNANYMAKRL-EK--HYP-IL-FRGVNGTVA 902 (985)
Q Consensus 829 ~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl~~~~~~~~-~~a~~l~~~L-~~--g~~-l~-~~~~~~~~~ 902 (985)
..+++.+++++++++.+.|..+..+.+. ++.. ++.+++++.| +. .+. +. +.+ .+. +
T Consensus 318 -------------~~~t~~~~~~~~aaa~aal~~~~~~~~~---~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~-~g~-~ 379 (459)
T 4a6r_A 318 -------------HGFTYSGHPVCAAVAHANVAALRDEGIV---QRVKDDIGPYMQKRWRETFSRFEHVDDVRG-VGM-V 379 (459)
T ss_dssp -------------HHHHHCSCHHHHHHHHHHHHHHHHTCHH---HHHHHTHHHHHHHHHHHHHTTCTTEEEEEE-ETT-E
T ss_pred -------------cCCCCCCCHHHHHHHHHHHHHHhcchHH---HHHHHHHHHHHHHHHHHHHhcCCCeEEEEE-EEE-E
Confidence 0011223445556666677766444443 3445 5666677666 32 122 11 111 112 1
Q ss_pred eEEEEEecCccc------cCCCCHHHHHHHHHHCCCccCCCCCCCCCEEEEeccCCCCHHHHHHHHccCChhHHHHhhc
Q 001989 903 HEFIVDLRGLKN------TAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRLK 975 (985)
Q Consensus 903 ~~~iv~~~~~~~------~~g~~~~~v~~~L~~~Gi~~~~~~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~~ 975 (985)
+.+.+..-.. .......++++.|.++|+.+.... +.+||+|+...|+|||++ +++.|+++++++.
T Consensus 380 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~g----~~iRi~~~~~~t~e~i~~--~l~~l~~~l~~~~ 450 (459)
T 4a6r_A 380 --QAFTLVKNKAKRELFPDFGEIGTLCRDIFFRNNLIMRACG----DHIVSAPPLVMTRAEVDE--MLAVAERCLEEFE 450 (459)
T ss_dssp --EEEEECSBTTTTBCCSSTTHHHHHHHHHHHHTTEECEEET----TEEEECCCTTCCHHHHHH--HHHHHHHHHHHHH
T ss_pred --EEEEEecCccccccccchHHHHHHHHHHHHHCCeEEecCC----CEEEEECCCCCCHHHHHH--HHHHHHHHHHHHH
Confidence 2233321000 000015688999999999875432 799999999999999999 7888888887653
|
| >3acz_A Methionine gamma-lyase; L-methionine; HET: LLP; 1.97A {Entamoeba histolytica} PDB: 3aej_A* 3ael_A* 3aem_A* 3aen_A* 3aeo_A* 3aep_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=5.8e-17 Score=186.04 Aligned_cols=273 Identities=17% Similarity=0.200 Sum_probs=177.9
Q ss_pred HHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHH----HHHCCcEEEEEcC
Q 001989 634 FNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPAT----AAMCGMKIVSVGT 709 (985)
Q Consensus 634 ~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~----a~~~G~~vv~v~~ 709 (985)
..++++.+++++|.+. .+.+++|++|+..++.++ ..++++||+++..|+..... ++..|++++.++.
T Consensus 61 ~~~l~~~la~~~g~~~-~i~~~sG~~ai~~~~~~~--------~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~~~~v~~ 131 (389)
T 3acz_A 61 VEQFEEMVCSIEGAAG-SAAFGSGMGAISSSTLAF--------LQKGDHLIAGDTLYGCTVSLFTHWLPRFGIEVDLIDT 131 (389)
T ss_dssp HHHHHHHHHHHHTCSE-EEEESSHHHHHHHHHTTT--------CCTTCEEEEESSCCHHHHHHHHHHHHHTTCEEEEECT
T ss_pred HHHHHHHHHHHhCCCe-EEEeCCHHHHHHHHHHHH--------hCCCCEEEEeCCCchHHHHHHHHHHHHcCCEEEEECC
Confidence 5578899999999874 456677887765444332 13678999988877755443 4678999999987
Q ss_pred CCCCCCCHHHHHHHHHhcCCCEEEEEEEcCC-CccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCccCCcEEE
Q 001989 710 DAKGNINIEELRKAAEANRDNLSTLMVTYPS-THGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIGADVCH 788 (985)
Q Consensus 710 d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~pn-~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~g~Di~~ 788 (985)
.|+++|+++++ +++++|++++|+ ++|.+. |+++|+++|+++|+++++|+++..+. ...|..+++|+++
T Consensus 132 -----~d~~~l~~~i~---~~~~~v~~~~~~nptG~~~-~l~~i~~~~~~~~~~livD~~~~~~~--~~~~~~~~~di~~ 200 (389)
T 3acz_A 132 -----SDVEKVKAAWK---PNTKMVYLESPANPTCKVS-DIKGIAVVCHERGARLVVDATFTSPC--FLKPLELGADIAL 200 (389)
T ss_dssp -----TCHHHHHHTCC---TTEEEEEEESSCTTTCCCC-CHHHHHHHHHHHTCEEEEECTTTCTT--TCCGGGTTCSEEE
T ss_pred -----CCHHHHHHhcC---CCCeEEEEECCCCCCCeec-CHHHHHHHHHHcCCEEEEECCCcccc--ccCccccCCeEEE
Confidence 38999999997 789999999984 699998 89999999999999999999985332 2345567899999
Q ss_pred eCCcccccccCCCCCCceEEEEEcc-cccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHH
Q 001989 789 LNLHKTFCIPHGGGGPGMGPIGVKK-HLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKG 867 (985)
Q Consensus 789 ~s~hK~l~~p~g~GGPg~G~i~~~~-~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eG 867 (985)
.|+||+|+.| |++-+|++++++ ++.+.+..... ..+...+ +. .+|+.+..+ +.
T Consensus 201 ~S~sK~~~~~---~~~~~G~v~~~~~~~~~~l~~~~~-------------~~g~~~~-----~~---~~~~~~~~l--~~ 254 (389)
T 3acz_A 201 HSVSKYINGH---GDVIGGVSSAKTAEDIATIKFYRK-------------DAGSLMA-----PM---DAFLCARGM--KT 254 (389)
T ss_dssp EETTTTTTCS---SCCCCEEEEESSHHHHHHHHHHHH-------------HHCCCCC-----HH---HHHHHHHHH--TT
T ss_pred ECChhhccCC---CCceeEEEEECcHHHHHHHHHHHH-------------hcCCCCC-----HH---HHHHHHcCc--cH
Confidence 9999998532 222248999988 76554321100 0011111 11 123333333 23
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCC---eeecCCC------------CceeeEEEEEecCccccCCCCHHHHHHHHHHCCC
Q 001989 868 LTEASKIAILNANYMAKRLEKHYP---ILFRGVN------------GTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGF 932 (985)
Q Consensus 868 l~~~~~~~~~~a~~l~~~L~~g~~---l~~~~~~------------~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi 932 (985)
+....++..+++..+.+.|++... +.+++-. ......+.+.++ + .+++.+.|.+.|+
T Consensus 255 l~~r~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~~~~~~~~~~~~g~g~~~~~~l~------~--~~~~~~~l~~~~i 326 (389)
T 3acz_A 255 LPIRMQIHMENGLKVAKFLEQHEKIVKVNHPGLESFPGHDIAKKQMTGYGSTFLFEMK------S--FEAAKKLMEHLKV 326 (389)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEES------S--HHHHHHHHTTCSS
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCCeEEEEEEC------C--HHHHHHHHHhCCC
Confidence 444455666777888877765211 1111100 001122344443 2 5667777777787
Q ss_pred ccCCC---------CCC-----------------C-CCEEEEeccCCCCHHHHHH
Q 001989 933 HGPTM---------SWP-----------------V-PGTLMIEPTESESKSWTGI 960 (985)
Q Consensus 933 ~~~~~---------~~p-----------------~-~~~lris~t~~~t~eeId~ 960 (985)
..... .+| + ++.+|+|++..+++++|+.
T Consensus 327 ~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRlsvg~~~~~~li~~ 381 (389)
T 3acz_A 327 CTLAVSLGCVDTLIEHPASMTHAAVPENIMRKQGITPELVRISVGIENVDDIIAD 381 (389)
T ss_dssp SEEBSCCCCSSCEEECTTTTTTSSSCHHHHHHHTCCTTEEEEECCSSCHHHHHHH
T ss_pred cEECcCCCCcccEeeCCcccccccCCHHHHHhcCCCcCeEEEEeccCCHHHHHHH
Confidence 64221 111 1 4799999999888888887
|
| >3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula} | Back alignment and structure |
|---|
Probab=99.74 E-value=2.9e-17 Score=189.91 Aligned_cols=301 Identities=12% Similarity=0.085 Sum_probs=185.3
Q ss_pred hhHHHHHHHHHHHHHHHhCCCc--cceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEE
Q 001989 628 QGYQEMFNNLGEWLCTITGFDS--FSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIV 705 (985)
Q Consensus 628 ~G~~~~~~e~~~~la~l~G~~~--~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv 705 (985)
.|..++.+++.+++....+.+. ..++.++|++|+..++.++. .++|+|+++.+.|..+...++..|++++
T Consensus 80 ~g~~~lr~~ia~~~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~--------~~gd~Vl~~~p~~~~~~~~~~~~g~~~~ 151 (418)
T 3rq1_A 80 AGIPDFLCAAEKECFGNFRPEGHIRSIATAGGTGGIHHLIHNYT--------EPGDEVLTADWYWGAYRVICSDTGRTLV 151 (418)
T ss_dssp TCCHHHHHHHHHHHHGGGCCSSEEEEEEESHHHHHHHHHHHHHS--------CTTCEEEEESSCCTHHHHHHHHTTCEEE
T ss_pred CChHHHHHHHHHHHhcccCccccccEEECCchHHHHHHHHHHhc--------CCCCEEEECCCCchhHHHHHHHcCCEEE
Confidence 4555555555555544445441 23455666666654444321 4789999999888888888889999999
Q ss_pred EEcCC-CCCCCCHHHHHHHHHhc-CCCEE-EEEEEcC--CCccccccC---HHHHHHHHH------HcCCEEEEEccccc
Q 001989 706 SVGTD-AKGNINIEELRKAAEAN-RDNLS-TLMVTYP--STHGVYEEG---IDEICKIIH------DNGGQVYMDGANMN 771 (985)
Q Consensus 706 ~v~~d-~~g~iD~e~L~~~i~~~-~~~t~-~Vvv~~p--n~~G~i~~d---i~eI~~la~------~~galliVD~a~~~ 771 (985)
.+|++ +++.+|+++|++++++. .++++ +|++++| |++|.+. + +++|+++|+ ++|+++++|+++.
T Consensus 152 ~v~~~~~~~~~d~~~l~~~l~~~~~~~~~~~vi~~~p~~NPtG~~~-~~~~l~~l~~~~~~~~~~~~~~~~li~De~y~- 229 (418)
T 3rq1_A 152 TYSLFDEHNNFNHEAFQNRVNELAAKQTNVVVIFNTPGNNPTGYSI-EDKDWDSILNFLKDLVAIGRNNVIIGIDVAYL- 229 (418)
T ss_dssp EECSBCTTSSBCHHHHHHHHHHHHHHCSEEEEEEECSSCTTTCCCC-CHHHHHHHHHHHHHHHHTSSCEEEEEEECTTG-
T ss_pred EEeeeCCCCCcCHHHHHHHHHHhhccCCCEEEEEeCCCCCCCCCCC-CHHHHHHHHHHHHHhhhccCCCeEEEEecccc-
Confidence 99984 45789999999999731 01444 7888888 5799987 5 455556666 8999999999973
Q ss_pred cccC-------C-CCCCccCCc---EEEeCCcccccccCCCCCCceEEEEE---cccccCcCCCCccccCCCCCCCCCCC
Q 001989 772 AQVG-------L-TSPGYIGAD---VCHLNLHKTFCIPHGGGGPGMGPIGV---KKHLAPFLPSHPVVSTGGIPAPEKSQ 837 (985)
Q Consensus 772 ~~~~-------l-~~pg~~g~D---i~~~s~hK~l~~p~g~GGPg~G~i~~---~~~l~~~lp~~~~g~~~~~~~~~~~~ 837 (985)
.+.. + ........| +++.|++|+|++ .|.++|++++ ++++.+.+........ + .
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~~----~G~r~G~~~~~~~~~~~~~~~~~~~~~~~-------~-~ 297 (418)
T 3rq1_A 230 DYSGEKDEVRAFFNKFSHLPKEILTCVCYSLSKGFTM----YGQRVGAMIGISDDEEIADEFFEVNKSTS-------R-A 297 (418)
T ss_dssp GGSSCHHHHHGGGGGGTTCCTTEEEEEEEESTTTTTC----CSSCCEEEEEEESSHHHHHHHHHHHHHHH-------H-H
T ss_pred cccCChHHHHHHHHHHHhcCCCceEEEEEeCCCCCcC----cCCcceEEEEEeCCHHHHHHHHHHHHHHH-------h-h
Confidence 1111 0 001112234 677899999854 3678999988 6666544321100000 0 0
Q ss_pred CCCCCCCcchhhhHHHHHHHHHHHHhc-----HHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecC
Q 001989 838 PLGTIAAAPWGSALILPISYTYIAMMG-----SKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRG 911 (985)
Q Consensus 838 ~~~~i~s~~~g~~~~~~~a~a~l~~lg-----~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~ 911 (985)
.+++.+ .....++...+.... .+.++++.++..++++++.+.|++ ++++. .+.+.++ +.+++
T Consensus 298 ~~~~~~------~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~--~~~~~~~--~~~~~-- 365 (418)
T 3rq1_A 298 TWSNIC------RPAMRTMANIVADPAKFKEYEAERNCYYQLIRDRADIFKQEAAQVGLPML--PYRGGFF--ITIPT-- 365 (418)
T ss_dssp HTSSCC------HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCC--CCCSSSE--EEEEC--
T ss_pred ccCCCc------hHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC--CCCceEE--EEcCC--
Confidence 001111 111112222222110 112234445667778888888876 55542 2223222 22333
Q ss_pred ccccCCCCHHHHHHHHHHCCCccCCCCCCCCCEEEEeccCCCCHHHHHHHHccCChhHHHHhhc
Q 001989 912 LKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRLK 975 (985)
Q Consensus 912 ~~~~~g~~~~~v~~~L~~~Gi~~~~~~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~~ 975 (985)
.+..++++.|.++||.+... .+.+||++. ..++++|++ +++.|+++++++.
T Consensus 366 ------~~~~~~~~~l~~~gi~v~~g----~~~iRis~~-~~~~~~i~~--~~~~l~~~l~~~~ 416 (418)
T 3rq1_A 366 ------DSANAICEELKKEHIYVIAL----ANGIRIAAC-GIPKCQMTG--LAEKIYNAMKSLG 416 (418)
T ss_dssp ------TTHHHHHHHHHHTTEECEEC----SSEEEEEGG-GSCHHHHTT--HHHHHHHHHHHTT
T ss_pred ------CCHHHHHHHHHhCCEEEecC----CCCeEEEEe-cCCHHHHHH--HHHHHHHHHHHHh
Confidence 25788999999999987532 478999976 569999999 8899999888764
|
| >3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987} | Back alignment and structure |
|---|
Probab=99.74 E-value=4.5e-17 Score=186.15 Aligned_cols=301 Identities=11% Similarity=0.022 Sum_probs=184.4
Q ss_pred HHHHHHHH-HHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcCCC-
Q 001989 634 FNNLGEWL-CTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDA- 711 (985)
Q Consensus 634 ~~e~~~~l-a~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~d~- 711 (985)
..++++.+ ++++|.....+.+++|++|+..++.++ +.++||+||++...|..+...+...|++++.+++++
T Consensus 38 ~~~l~~~~~a~~~g~~~~~v~~~sgt~al~~al~~l-------~~~~Gd~Vi~~~~~~~~~~~~~~~~G~~~~~v~~~~~ 110 (377)
T 3ju7_A 38 NQRFEQTIMSGFFQNRGAVTTVANATLGLMAAIQLK-------KRKKGKYALMPSFTFPATPLAAIWCGLEPYFIDISID 110 (377)
T ss_dssp HHHHHHHHHHHTSTTCSEEEEESCHHHHHHHHHHHH-------SCTTCCEEEEESSSCTHHHHHHHHTTCEEEEECBCTT
T ss_pred HHHHHHHHHHHHhCCCCeEEEeCCHHHHHHHHHHHc-------CCCCcCEEEECCCCcHHHHHHHHHcCCEEEEEecCCc
Confidence 45788999 999993223466678887765444432 124789999999988888777888999999999974
Q ss_pred CCCCCHHHHHHHH-HhcCCC--EEEEEEEcCCCccccccCHHHHHHHHHHcCCEEEEEccccccccCCC-CCCccCCcEE
Q 001989 712 KGNINIEELRKAA-EANRDN--LSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLT-SPGYIGADVC 787 (985)
Q Consensus 712 ~g~iD~e~L~~~i-~~~~~~--t~~Vvv~~pn~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~-~pg~~g~Di~ 787 (985)
++.+|+++|++++ + ++ |++|++++ .+|... |+++|.++|+ +|+++|+|++|..+..... ..+....|+.
T Consensus 111 ~~~~d~~~l~~~i~~---~~~~tk~v~~~~--~~G~~~-~~~~i~~la~-~~~~vi~D~a~a~g~~~~~~~~g~~~~d~~ 183 (377)
T 3ju7_A 111 DWYMDKTVLWDKIEE---LKEEVAIVVPYA--TFGSWM-NLEEYEELEK-KGVPVVVDAAPGFGLMNGGMHYGQDFSGMI 183 (377)
T ss_dssp TCSBCHHHHHHHHHH---HGGGEEEECCBC--GGGBCC-CCHHHHHHHH-TTCCBEEECTTCTTCEETTEETTTTCSSEE
T ss_pred cCCcCHHHHHHHHhc---CCCCceEEEEEC--CCCCcc-CHHHHHHHHh-cCCEEEEECCCccCCeECCEeccCCCCcEE
Confidence 6899999999998 5 45 99888654 479887 8999999999 9999999999864321111 1111225776
Q ss_pred EeC--CcccccccCCCCCCceEEEEEcc-cccCcCCC-CccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHh
Q 001989 788 HLN--LHKTFCIPHGGGGPGMGPIGVKK-HLAPFLPS-HPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMM 863 (985)
Q Consensus 788 ~~s--~hK~l~~p~g~GGPg~G~i~~~~-~l~~~lp~-~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~l 863 (985)
++| .||+|+ ++.+|++++++ ++.+.+.. +..|..... .. .+.+. +... ....++ ..+.
T Consensus 184 ~~S~~~~K~l~------~g~gG~~~~~~~~l~~~~~~~~~~g~~~~~-~~-~~~g~-~~~~----~~~~aa---~~~~-- 245 (377)
T 3ju7_A 184 IYSFHATKPFG------IGEGGLIYSKNEEDIQRIKRMGNFGFDTNR-EC-TMMGF-NCKM----SEYAAA---IGIA-- 245 (377)
T ss_dssp EEECBTTSSSC------CBSCEEEEESCHHHHHHHHHHTBTTBCTTS-CB-CSSCC-BCCC----CHHHHH---HHHH--
T ss_pred EEECCCCCcCC------CCCcEEEEECCHHHHHHHHHHHhcCCCCCC-ce-eeccc-cCCC----CHHHHH---HHHH--
Confidence 666 568874 22456676653 33322210 011110000 00 00011 1110 111111 1111
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHhhcc--CCeeecCC-CCceeeE-EEEEecCccccCCCCHHHHHHHHHHCCCccCCCCC
Q 001989 864 GSKGLTEASKIAILNANYMAKRLEKH--YPILFRGV-NGTVAHE-FIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSW 939 (985)
Q Consensus 864 g~eGl~~~~~~~~~~a~~l~~~L~~g--~~l~~~~~-~~~~~~~-~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~~ 939 (985)
+.+.+.+..++..++++++.+.|++. ..+.+... .....+. +.+.++ .+.+.+++.+.|.++||.+...+.
T Consensus 246 ~l~~l~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~L~~~gI~~~~~~~ 320 (377)
T 3ju7_A 246 TMKKWDDKLKERTRISEWYKQLLQSNGLMKKGWQLQKTEAVIQQFMPILCP-----EEVRNKQVIEDLKKQKIEARLYFS 320 (377)
T ss_dssp HHHTHHHHHHHHHHHHHHHHHHHHHTTTTTTTCBCCCCSCBCCSSEEEECC-----TTSCHHHHHHHHHTTTBCCBCTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccCCCCCcceEEEEEEEeC-----ChhhHHHHHHHHHHCCCceecccC
Confidence 12456666777888889999998762 11211111 1111222 234443 123588999999999998653210
Q ss_pred -C---------------------CCCEEEEeccCCCCHHHHHHHHccCChhHHHHh
Q 001989 940 -P---------------------VPGTLMIEPTESESKSWTGIVMLSSPSEKKLHR 973 (985)
Q Consensus 940 -p---------------------~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~ 973 (985)
| ....|++.+....|++|+++ +++.|++++++
T Consensus 321 ~~~~~~~~~~~~~~~~~p~~~~~~~~~l~lp~~~~~t~~di~~--v~~~l~~~~~~ 374 (377)
T 3ju7_A 321 PSCHQQVLFRNYKSTDLTRTNKIAKRIVSLPLWEGMTKEIVEQ--IVICLGQKVVS 374 (377)
T ss_dssp SCGGGSGGGTTSCBSCCHHHHHHHHHEEEECCCTTCCHHHHHH--HHHHHTC----
T ss_pred CccccchhhhcCCCCCCHHHHHHHhCEEECCCCCCCCHHHHHH--HHHHHHHHHhc
Confidence 1 02579999999999999999 77777776654
|
| >1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=3.7e-17 Score=185.38 Aligned_cols=285 Identities=12% Similarity=0.043 Sum_probs=183.3
Q ss_pred HHHHHHHHHHhCCCccc-eecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcCCCCC
Q 001989 635 NNLGEWLCTITGFDSFS-LQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKG 713 (985)
Q Consensus 635 ~e~~~~la~l~G~~~~~-~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~d~~g 713 (985)
.++++.+++++|.+... ++.++|++++..++.++ ++++|+++.+.|..+...++..|++++.+|.+++.
T Consensus 62 ~~l~~~la~~~~~~~~~v~~~~g~~~al~~~~~~~----------~gd~vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~ 131 (364)
T 1lc5_A 62 FHLHQALARHHQVPASWILAGNGETESIFTVASGL----------KPRRAMIVTPGFAEYGRALAQSGCEIRRWSLREAD 131 (364)
T ss_dssp HHHHHHHHHHHTSCGGGEEEESSHHHHHHHHHHHH----------CCSEEEEEESCCTHHHHHHHHTTCEEEEEECCGGG
T ss_pred HHHHHHHHHHHCcCHHHEEECCCHHHHHHHHHHHc----------CCCeEEEeCCCcHHHHHHHHHcCCeEEEEeCCccc
Confidence 47888999999987644 44566666664433322 23789998777767777778889999999987522
Q ss_pred CCC-HHHHHHHHHhcCCCEEEEEEEcCC-CccccccC---HHHHHHHHHHcCCEEEEEcccccccc-C---CCCCCccCC
Q 001989 714 NIN-IEELRKAAEANRDNLSTLMVTYPS-THGVYEEG---IDEICKIIHDNGGQVYMDGANMNAQV-G---LTSPGYIGA 784 (985)
Q Consensus 714 ~iD-~e~L~~~i~~~~~~t~~Vvv~~pn-~~G~i~~d---i~eI~~la~~~galliVD~a~~~~~~-~---l~~pg~~g~ 784 (985)
.++ ++++.+.++ +++++|++++|+ ++|.+. + +++|+++|+++|+++++|+++..... + +...+..+.
T Consensus 132 ~~~~l~~~~~~~~---~~~~~v~i~~p~nptG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~ 207 (364)
T 1lc5_A 132 GWQLTDAILEALT---PDLDCLFLCTPNNPTGLLP-ERPLLQAIADRCKSLNINLILDEAFIDFIPHETGFIPALKDNPH 207 (364)
T ss_dssp TTCCCTTHHHHCC---TTCCEEEEESSCTTTCCCC-CHHHHHHHHHHHHHHTCEEEEECTTGGGSTTCCCSGGGCTTCTT
T ss_pred ccchhHHHHHhcc---CCCCEEEEeCCCCCCCCCC-CHHHHHHHHHHhhhcCcEEEEECcChhhccCccchhhHhccCCC
Confidence 233 455555554 678889999995 689987 5 99999999999999999999852211 1 111134567
Q ss_pred cEEEeCCcccccccCCCCCCceEEEE-EcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHh
Q 001989 785 DVCHLNLHKTFCIPHGGGGPGMGPIG-VKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMM 863 (985)
Q Consensus 785 Di~~~s~hK~l~~p~g~GGPg~G~i~-~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~l 863 (985)
|+++.|+||+|+. +|.++|+++ .++++.+.+.... .+.+. +.....++.++|..
T Consensus 208 ~i~~~s~sK~~~~----~G~r~G~~~~~~~~~~~~l~~~~--------------~~~~~------~~~~~~~~~~~l~~- 262 (364)
T 1lc5_A 208 IWVLRSLTKFYAI----PGLRLGYLVNSDDAAMARMRRQQ--------------MPWSV------NALAALAGEVALQD- 262 (364)
T ss_dssp EEEEEESTTTTTC----TTTCCEEEECCCHHHHHHHHHHS--------------CTTCS------CHHHHHHHHHGGGC-
T ss_pred EEEEEECchhhcC----CccceEEEEECCHHHHHHHHHhC--------------CCCCC------CHHHHHHHHHHHhC-
Confidence 8999999999854 356689999 7877654432100 00111 11222222233332
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHhhccCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCC-CCC--
Q 001989 864 GSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTM-SWP-- 940 (985)
Q Consensus 864 g~eGl~~~~~~~~~~a~~l~~~L~~g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~-~~p-- 940 (985)
.+.+++..++..++++++.+.|++..++...++.+. + +.+.++ + +..++.+.|.++||.+... .++
T Consensus 263 -~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~-~--~~~~~~------~-~~~~l~~~l~~~gi~v~~g~~~~~~ 331 (364)
T 1lc5_A 263 -SAWQQATWHWLREEGARFYQALCQLPLLTVYPGRAN-Y--LLLRCE------R-EDIDLQRRLLTQRILIRSCANYPGL 331 (364)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHTSTTEEECCCSSS-E--EEEEES------C-TTCCHHHHHHTTTEECEECTTSTTC
T ss_pred -cHHHHHHHHHHHHHHHHHHHHHhcCCCCEECCCCCe-E--EEEECC------C-cHHHHHHHHHHCCcEEeeCcccCCC
Confidence 245666667778888999999976323322222222 2 334554 1 2456889999999987542 232
Q ss_pred CCCEEEEeccCCCCHHHHHHHHccCChhHHHHhh
Q 001989 941 VPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRL 974 (985)
Q Consensus 941 ~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~ 974 (985)
.++++||++ .+.+|+|+ +++.|+++++++
T Consensus 332 ~~~~iRis~---~~~~~~~~--l~~~l~~~~~~~ 360 (364)
T 1lc5_A 332 DSRYYRVAI---RSAAQNER--LLAALRNVLTGI 360 (364)
T ss_dssp CTTEEEEEC---CCHHHHHH--HHHHHHHHC---
T ss_pred CCCEEEEEe---CCHHHHHH--HHHHHHHHhhcc
Confidence 147999997 47999999 778888776654
|
| >3uwc_A Nucleotide-sugar aminotransferase; lipopolysaccharide biosynthesis; HET: MSE PMP; 1.80A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.74 E-value=2.3e-16 Score=179.17 Aligned_cols=279 Identities=15% Similarity=0.141 Sum_probs=189.9
Q ss_pred HHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc---
Q 001989 212 SLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL--- 288 (985)
Q Consensus 212 ~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~--- 288 (985)
...++++.+|+++|.+ ++.++++||.++++++.+++. ++||+|+++...|+++...++. .|++++.++.
T Consensus 39 ~~~~l~~~la~~~~~~--~~~~~~~gt~a~~~~~~~~~~--~~gd~v~~~~~~~~~~~~~~~~----~g~~~~~~~~~~~ 110 (374)
T 3uwc_A 39 ELEKFEKRFAALHNAP--HAIGVGTGTDALAMSFKMLNI--GAGDEVITCANTFIASVGAIVQ----AGATPVLVDSENG 110 (374)
T ss_dssp HHHHHHHHHHHHTTCS--EEEEESCHHHHHHHHHHHTTC--CTTCEEEEESSSCHHHHHHHHH----TTCEEEEECBCTT
T ss_pred hHHHHHHHHHHHhCCC--cEEEeCCHHHHHHHHHHHcCC--CCCCEEEECCCccHHHHHHHHH----cCCEEEEEecCCC
Confidence 3557889999999987 577889999888777766533 3889999999999999988753 5888888765
Q ss_pred -----hhhhc-cCCCEeEEEEEcCCCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCCCCCccc--ceEEEecC---c
Q 001989 289 -----KDIDY-KSGDVCGVLVQYPGTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKPPGELG--ADIVVGSA---Q 357 (985)
Q Consensus 289 -----~~l~~-l~~~t~~V~v~~pn~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~~~~~~G--aDi~v~s~---k 357 (985)
+++++ +++++++|+++ |++|.+.|+++|.++|+++|+++++| +.++.|.......+| +|+++.++ |
T Consensus 111 ~~~d~~~l~~~~~~~~~~v~~~--n~~G~~~~~~~i~~~~~~~~~~li~D-~~~~~g~~~~~~~~~~~~d~~~~s~~~~K 187 (374)
T 3uwc_A 111 YVIDPEKIEAAITDKTKAIMPV--HYTGNIADMPALAKIAKKHNLHIVED-ACQTILGRINDKFVGSWGQFACFSLHPLK 187 (374)
T ss_dssp SSBCGGGTGGGCCTTEEEECCB--CGGGCCCCHHHHHHHHHHTTCEEEEE-CTTCTTCEETTEETTSSSSEEEEECSSSS
T ss_pred CCcCHHHHHHhCCCCceEEEEe--CCcCCcCCHHHHHHHHHHcCCEEEEe-CCCccCceeCCeeccccccEEEEeCCCCC
Confidence 34555 77889888833 57899999999999999999999995 344554332223344 69999984 5
Q ss_pred cccccCCCCCCcEEEEEEch-hhHhcCCCce-eeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHH
Q 001989 358 RFGVPMGYGGPHAAFLATSQ-EYKRMMPGRI-VGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYA 435 (985)
Q Consensus 358 ~lg~P~~~GGP~~G~l~~~~-~~~~~lp~~~-vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l 435 (985)
.|++ .+ .+|++.+++ ++.+.+.... .|.. ..|.. ...+.|. .+.++.+++
T Consensus 188 ~l~~-~g----~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~-----------~~~~~~~----~~~~~~aa~-- 239 (374)
T 3uwc_A 188 NLNV-WS----DAGVIITHSDEYAEKLRLYRNHGLI------NRDVC-----------VEYGINC----RMDTIQAVI-- 239 (374)
T ss_dssp SSCC-SS----CCEEEEESCHHHHHHHHHHTBTTEE------ETTEE-----------SSCCCBC----BCCHHHHHH--
T ss_pred cCCc-cc----eeEEEEeCCHHHHHHHHHHHhcCcc------ccCcc-----------ccccccC----CCCHHHHHH--
Confidence 5532 11 246777654 4544332111 0100 00110 0011111 111223333
Q ss_pred HHhCcchHHHHHHHHHHHHHHHHHHHhcCCC-eEEcCCC-----CcceEEEecCCHHHHHHHHHHcCceeeeec------
Q 001989 436 VYHGPEGLKTIAQRVHGLAGTFALGLKKLGT-VEVQGLP-----FFDTVKVKCADAHAIASAAYKIEMNLRVVD------ 503 (985)
Q Consensus 436 ~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~-~~~~~~~-----~~~~~~~~~~~~~~v~~~L~~~GI~~~~~~------ 503 (985)
.+...++++++.++..++++++++.|+++++ +++...+ .+..+.+..++..++.+.|.++||.++...
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~gi~v~~~~~~~~~~ 319 (374)
T 3uwc_A 240 ANRLMNQLETITEKRRGIAHLYDQSFVDLSEFIDVPVRREGVYHVFHIYVLRVKYRDQLFQYLKDNGIEVKIHYPIAMHL 319 (374)
T ss_dssp HHHHGGGHHHHHHHHHHHHHHHHHHTGGGTTTEECCCCCTTEECCCSSEEEEETTHHHHHHHHHHTTBCCBCSCSSCGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeEEeccCCCCCceeeEEEEEEcCCHHHHHHHHHHCCCccccCCCCcccc
Confidence 2233467888999999999999999999876 7765321 223455555458899999999999764321
Q ss_pred ---------------------CCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 504 ---------------------SNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 504 ---------------------~~~lris~t~~~t~edId~li~aL~~ 529 (985)
.+.+|++++..+|++|||+++++|.+
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~t~edi~~~~~~l~~ 366 (374)
T 3uwc_A 320 QPAAKSLGYQQGDFPMAEKHGEAVITLPAHPYLTEEEINYIIKKVRE 366 (374)
T ss_dssp SGGGGGGCCCTTSCHHHHHHHHHEEEECCCTTSCHHHHHHHHHHHHH
T ss_pred ChhhhhcCCccCCCccHHHHHhCEEEccCCCCCCHHHHHHHHHHHHH
Confidence 16799999999999999999999974
|
| >3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica} | Back alignment and structure |
|---|
Probab=99.74 E-value=6.7e-16 Score=174.02 Aligned_cols=298 Identities=8% Similarity=0.008 Sum_probs=205.0
Q ss_pred CCCCCCCCCcHHHHHHHHhCCccccccCCChhhHhhhHHHHHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhh
Q 001989 172 GMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQ 251 (985)
Q Consensus 172 G~g~y~~~~p~~v~~~i~~~~~~~t~~~pyq~e~sqg~l~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~ 251 (985)
+.|..+...|+.+.+++.+.-. ....|. . ....++++.+|+++|.++.++.+++|+|.+++.++.++.
T Consensus 22 ~~~~~~~~~~~~v~~a~~~~~~---~~~~y~-~------~~~~~l~~~la~~~~~~~~~i~~~~g~~~a~~~~~~~l~-- 89 (354)
T 3ly1_A 22 NFNENPLGMSPKAQAAARDAVV---KANRYA-K------NEILMLGNKLAAHHQVEAPSILLTAGSSEGIRAAIEAYA-- 89 (354)
T ss_dssp SSCCCSSCCCHHHHHHHHHTGG---GTTSCC-H------HHHHHHHHHHHHHTTSCGGGEEEESHHHHHHHHHHHHHC--
T ss_pred cCCCCCCCCCHHHHHHHHHHHh---hCcCCC-C------CchHHHHHHHHHHhCCChHHEEEeCChHHHHHHHHHHHh--
Confidence 3344444567777656554322 223332 1 134578899999999988899999999988887776542
Q ss_pred cCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCch--------hhhc-cC--CCEeEEEEEcC-CCCeeeccHHHHH
Q 001989 252 KGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDLK--------DIDY-KS--GDVCGVLVQYP-GTEGEVLDYGDFI 319 (985)
Q Consensus 252 ~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~~--------~l~~-l~--~~t~~V~v~~p-n~~G~v~di~~I~ 319 (985)
++||+|+++...|+++...++. .|++++.++.+ +|++ ++ +++++|++++| |.+|.+.|++++.
T Consensus 90 -~~gd~vl~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~v~l~~p~nptG~~~~~~~l~ 164 (354)
T 3ly1_A 90 -SLEAQLVIPELTYGDGEHFAKI----AGMKVTKVKMLDNWAFDIEGLKAAVAAYSGPSIVYLVNPNNPTGTITPADVIE 164 (354)
T ss_dssp -CTTCEEEEESSSCTHHHHHHHH----TTCEEEEECCCTTSCCCHHHHHHHHHTCSSCEEEEEESSCTTTCCCCCHHHHH
T ss_pred -CCCCeEEECCCCchHHHHHHHH----cCCEEEEecCCCCCCCCHHHHHHHhccCCCCCEEEEeCCCCCcCCCcCHHHHH
Confidence 3889999999999998887753 58888888653 4555 65 78999999998 6799999988888
Q ss_pred HHHHh--CCcEEEEEecCccccCCC----CC----Ccc-cceEEEecC-ccccccCCCCCCcEEEEEEchhhHhcCCCce
Q 001989 320 KNAHA--NGVKVVMATDLLALTILK----PP----GEL-GADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRI 387 (985)
Q Consensus 320 ~~a~~--~galliV~a~~~~lg~l~----~~----~~~-GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~ 387 (985)
++++. +|+++++|. .++..... .+ ..+ +.+++++|. |.|+. +|..+|++++++++.+.+...
T Consensus 165 ~l~~~~~~~~~li~De-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~----~G~r~G~~~~~~~~~~~~~~~- 238 (354)
T 3ly1_A 165 PWIASKPANTMFIVDE-AYAEFVNDPRFRSISPMITQGAENIILLKTFSKIHAM----AGMRVGYAVAHPTVIALMGRY- 238 (354)
T ss_dssp HHHHTCCTTEEEEEEC-TTGGGCCCTTCCCSHHHHHTTCSSEEEEEESSSTTCC----GGGCCEEEECCHHHHHHHGGG-
T ss_pred HHHHhCCCCeEEEEec-cHHHhccccccCCHHHHhhhcCCCEEEEeeChhhccC----hhhhheeeecCHHHHHHHHHh-
Confidence 88887 899999953 33322121 11 123 667999997 87753 234579999988877665110
Q ss_pred eeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCe
Q 001989 388 VGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTV 467 (985)
Q Consensus 388 vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~ 467 (985)
. .. .+.|. ....+..++ +...+.++++.++..++.+++.+.|+++| +
T Consensus 239 ---------~---------------~~-~~~~~---~~~~a~~~~----l~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~ 285 (354)
T 3ly1_A 239 ---------V---------------AG-EKINF---SGVDAALAS----MNDSAFITYSKKSNDVSRQILLKALEDLK-L 285 (354)
T ss_dssp ---------T---------------TC-SCCCH---HHHHHHHHH----TTCHHHHHHHHHHHHHHHHHHHHHHHHHT-C
T ss_pred ---------c---------------CC-CCCCH---HHHHHHHHH----hcCHHHHHHHHHHHHHHHHHHHHHHHHCC-C
Confidence 0 00 11111 112122221 22235678889999999999999999886 7
Q ss_pred EEcCCCCcceEEEecCC-HHHHHHHHHHcCceee-ee--cCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 468 EVQGLPFFDTVKVKCAD-AHAIASAAYKIEMNLR-VV--DSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 468 ~~~~~~~~~~~~~~~~~-~~~v~~~L~~~GI~~~-~~--~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
++... ...-+.+..+. ..++.+.|.++||.++ .. .++.+|++++ |++|+++++++|..
T Consensus 286 ~~~~~-~~~~~~~~~~~~~~~~~~~l~~~gi~v~g~~~~~~~~iRis~~---~~~~i~~~~~~l~~ 347 (354)
T 3ly1_A 286 PYLPS-EGNFVFHQLVVPLKDYQTHMADAGVLIGRAFPPADNWCRISLG---TPQEMQWVADTMRE 347 (354)
T ss_dssp CBCCC-CSSEEEEECSSCHHHHHHHHHHTTEECCCCCTTCTTEEEEECC---CHHHHHHHHHHHHH
T ss_pred eECCC-CceEEEEECCCCHHHHHHHHHHCCEEEeecCCCCCCEEEEEcC---CHHHHHHHHHHHHH
Confidence 76532 22235566664 8899999999999886 11 2578999976 89999999999874
|
| >2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB: 1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=2.8e-16 Score=180.69 Aligned_cols=277 Identities=14% Similarity=0.068 Sum_probs=185.2
Q ss_pred HHHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc--
Q 001989 211 ESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL-- 288 (985)
Q Consensus 211 ~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~-- 288 (985)
+...++++.+++++|.+ ...++.+|+.+++.++.++ . ++||+|++++..|+++...++.+++..|++++.++.
T Consensus 64 ~~~~~l~~~la~~~g~~--~~i~~~sG~~a~~~~l~~~-~--~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d 138 (398)
T 2rfv_A 64 PTTDALEKKLAVLERGE--AGLATASGISAITTTLLTL-C--QQGDHIVSASAIYGCTHAFLSHSMPKFGINVRFVDAAK 138 (398)
T ss_dssp HHHHHHHHHHHHHHTCS--EEEEESSHHHHHHHHHHHH-C--CTTCEEEEESSSCHHHHHHHHTHHHHTTCEEEEECTTS
T ss_pred hHHHHHHHHHHHHhCCC--cEEEECCHHHHHHHHHHHH-h--CCCCEEEEcCCCcccHHHHHHHHHHHcCCEEEEeCCCC
Confidence 44567889999999987 4667778887777666554 2 378999999999999999886555567999999876
Q ss_pred -hhhhc-cCCCEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCCCCCcccceEEEecC-ccccccCC
Q 001989 289 -KDIDY-KSGDVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKPPGELGADIVVGSA-QRFGVPMG 364 (985)
Q Consensus 289 -~~l~~-l~~~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~~~~~~GaDi~v~s~-k~lg~P~~ 364 (985)
+++++ +++++++|++.+| |.+|.+.|+++|+++||++|+++++| +..+.+....+..+|+|+++.|. |.|++|
T Consensus 139 ~~~l~~~i~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D-e~~~~~~~~~~~~~~~di~~~s~sK~~~~~-- 215 (398)
T 2rfv_A 139 PEEIRAAMRPETKVVYIETPANPTLSLVDIETVAGIAHQQGALLVVD-NTFMSPYCQQPLQLGADIVVHSVTKYINGH-- 215 (398)
T ss_dssp HHHHHHHCCTTEEEEEEESSBTTTTBCCCHHHHHHHHHHTTCEEEEE-CTTTCTTTCCGGGGTCSEEEEETTTTTTCS--
T ss_pred HHHHHHhcCCCCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEE-CCCcccccCCchhhCCcEEEEeCcccccCC--
Confidence 45555 7889999999998 78999999999999999999999995 45565555556678999999998 777643
Q ss_pred CCCCcEEEEEEchhhHh-cCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcchH
Q 001989 365 YGGPHAAFLATSQEYKR-MMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGL 443 (985)
Q Consensus 365 ~GGP~~G~l~~~~~~~~-~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl 443 (985)
|+|-+|++++++++++ .+.....+ + | .++.|. ...++..+++ +.+
T Consensus 216 -g~~~~G~~~~~~~~~~~~~~~~~~~----------~------------~-~~~~~~---~~~~~~~~~l-------~~~ 261 (398)
T 2rfv_A 216 -GDVIGGIIVGKQEFIDQARFVGLKD----------I------------T-GGCMSP---FNAWLTLRGV-------KTL 261 (398)
T ss_dssp -SCCCCEEEEECHHHHHHHHHTHHHH----------T------------T-CCCCCH---HHHHHHHHHH-------TTH
T ss_pred -CCceEEEEEECHHHHHHHHHHHHHh----------C------------C-CCCCCH---HHHHHHHhhh-------hhH
Confidence 3333489999987765 33110000 0 0 111111 1111221211 234
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCeEEc--CC---------------CCcceEEEecCC-HHHHHHHHHH---cCceeee-
Q 001989 444 KTIAQRVHGLAGTFALGLKKLGTVEVQ--GL---------------PFFDTVKVKCAD-AHAIASAAYK---IEMNLRV- 501 (985)
Q Consensus 444 ~~i~~~~~~~a~~l~~~L~~~g~~~~~--~~---------------~~~~~~~~~~~~-~~~v~~~L~~---~GI~~~~- 501 (985)
....++..+++.++.+.|++.+.+.-+ .. .....+.|.+++ ..+..+.+.+ .|+.++.
T Consensus 262 ~~~~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~G 341 (398)
T 2rfv_A 262 GIRMERHCENALKIARFLEGHPSITRVYYPGLSSHPQYELGQRQMSLPGGIISFEIAGGLEAGRRMINSVELCLLAVSLG 341 (398)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETTHHHHHHHHHTTCSSSEECSCCS
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEEcCCHHHHHHHHHhCCcceeccCCC
Confidence 445556677888888888876423211 10 123346666665 2333333322 3443211
Q ss_pred --------------------------ecCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 502 --------------------------VDSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 502 --------------------------~~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
..++.+|+|++..+++++|++++++|..
T Consensus 342 ~~~~li~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~ 395 (398)
T 2rfv_A 342 DTETLIQHPASMTHSPVAPEERLKAGITDGLIRLSVGLEDPEDIINDLEHAIRK 395 (398)
T ss_dssp SSSCEEECHHHHTSSSSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHH
T ss_pred CcceeeecccccccccCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHHh
Confidence 1157899999999999999999999863
|
| >1svv_A Threonine aldolase; structural genomics, structural genomics of pathogenic proto SGPP, protein structure initiative, PSI; 2.10A {Leishmania major} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.73 E-value=9.1e-17 Score=180.94 Aligned_cols=297 Identities=12% Similarity=0.060 Sum_probs=199.7
Q ss_pred CCcHHHHHHHHhCCccccccCCChhhHhhhHHHHHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEE
Q 001989 179 HVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTF 258 (985)
Q Consensus 179 ~~p~~v~~~i~~~~~~~t~~~pyq~e~sqg~l~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~V 258 (985)
..|+.+.+++.+. +..|.+ .+|..+...++++.+++++|.+..++.+++|+|.+++.++.++. ++||+|
T Consensus 25 ~~~~~v~~a~~~~---~~~~~~-----~~g~~~~~~~~~~~l~~~~g~~~~~v~~~~g~t~a~~~~~~~~~---~~gd~v 93 (359)
T 1svv_A 25 GMHPKILDLMARD---NMTQHA-----GYGQDSHCAKAARLIGELLERPDADVHFISGGTQTNLIACSLAL---RPWEAV 93 (359)
T ss_dssp CCCHHHHHHHHHH---TTCCCC-----STTCSHHHHHHHHHHHHHHTCTTSEEEEESCHHHHHHHHHHHHC---CTTEEE
T ss_pred CCCHHHHHHHHHH---Hhhccc-----cccccHHHHHHHHHHHHHhCCCCccEEEeCCchHHHHHHHHHHh---CCCCEE
Confidence 4555555455542 222322 12444566778899999999888889999999988887776542 378999
Q ss_pred EEcCCCChhHHHH--HHHhhcCCCeEEEEeCc-------hhhhc-cCCC-------EeEEEEEcCCCCeeecc---HHHH
Q 001989 259 IIASNCHPQTIDI--CITRADGFDIKVVVSDL-------KDIDY-KSGD-------VCGVLVQYPGTEGEVLD---YGDF 318 (985)
Q Consensus 259 lv~~~~H~s~~~~--~~~~a~~~gi~v~~v~~-------~~l~~-l~~~-------t~~V~v~~pn~~G~v~d---i~~I 318 (985)
++++..|+++... ++ ..|++++.++. ++|++ ++++ +++|++++||.+|.+.| +++|
T Consensus 94 l~~~~~~~~~~~~~~~~----~~g~~~~~v~~~~~~~d~~~l~~~l~~~~~~~~~~~~~v~~~~~~ptG~~~~~~~l~~i 169 (359)
T 1svv_A 94 IATQLGHISTHETGAIE----ATGHKVVTAPCPDGKLRVADIESALHENRSEHMVIPKLVYISNTTEVGTQYTKQELEDI 169 (359)
T ss_dssp EEETTSHHHHSSTTHHH----HTTCCEEEECCTTSCCCHHHHHHHHHHSCSTTSCEEEEEEEESSCTTSCCCCHHHHHHH
T ss_pred EEcccchHHHHHHHHHh----cCCCeeEEEeCCCCeecHHHHHHHHHHHHhccCCCceEEEEEcCCCCceecCHHHHHHH
Confidence 9999999988774 32 35778887764 44555 5443 89999999998999987 9999
Q ss_pred HHHHHhCCcEEEEEecCc---cccCCCCC-Cc----ccceEEEecCccccccCCCCCCcEEEEEEchhhHhcCCCceeee
Q 001989 319 IKNAHANGVKVVMATDLL---ALTILKPP-GE----LGADIVVGSAQRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGV 390 (985)
Q Consensus 319 ~~~a~~~galliV~a~~~---~lg~l~~~-~~----~GaDi~v~s~k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~ 390 (985)
.++|+++|+++++|. .. +++.+... .. .++|+++.++.+++.| .+.|++++++++++.+....
T Consensus 170 ~~~~~~~~~~li~De-~~~~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~g~~-----~~~g~l~~~~~~~~~~~~~~--- 240 (359)
T 1svv_A 170 SASCKEHGLYLFLDG-ARLASALSSPVNDLTLADIARLTDMFYIGATKAGGM-----FGEALIILNDALKPNARHLI--- 240 (359)
T ss_dssp HHHHHHHTCEEEEEC-TTHHHHHTSTTCCCCHHHHHHHCSEEEEECTTTTCS-----SCEEEEECSGGGCTTHHHHH---
T ss_pred HHHHHHhCCEEEEEc-cchhhhhcCCCcchhhhhhhhcCCEEEEecccCCCC-----CceEEEEEcccHHHHHHHHH---
Confidence 999999999999953 33 33433222 22 5789999988555433 24689998887655441100
Q ss_pred eecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEc
Q 001989 391 SIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQ 470 (985)
Q Consensus 391 t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~ 470 (985)
...++.+-.+.....+ + ...+..++++++.++..++.+++.+.|+..| +++.
T Consensus 241 ----------------------~~~~~~~~~~~~~~~~----~-~~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~-~~~~ 292 (359)
T 1svv_A 241 ----------------------KQRGALMAKGWLLGIQ----F-EVLMKDNLFFELGAHSNKMAAILKAGLEACG-IRLA 292 (359)
T ss_dssp ----------------------HHTTCCCTTTHHHHHH----H-HHHTSTTHHHHHHHHHHHHHHHHHHHHHHTT-CCBS
T ss_pred ----------------------hcCCcccccchhhHHH----H-HHHHhhhhHHHHHHHHHHHHHHHHHHhccCC-eEEc
Confidence 0001000000011111 1 2345556788899999999999999995445 7776
Q ss_pred CCCCcceEEEecCCHHHHHHHHHHc-Cceeeee---cCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 471 GLPFFDTVKVKCADAHAIASAAYKI-EMNLRVV---DSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 471 ~~~~~~~~~~~~~~~~~v~~~L~~~-GI~~~~~---~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
.+....-+.+.. ..++.++|.++ ||.+... ..+.+|++++..+|++||++++++|++
T Consensus 293 ~~~~~~~~~~~~--~~~~~~~l~~~~gi~v~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~ 353 (359)
T 1svv_A 293 WPSASNQLFPIL--ENTMIAELNNDFDMYTVEPLKDGTCIMRLCTSWATEEKECHRFVEVLKR 353 (359)
T ss_dssp SCCSSSEECBEE--EHHHHHHHTTTEECEEEEEETTTEEEEEEECCTTCCHHHHHHHHHHHHH
T ss_pred cCCccceEEEEc--CHHHHHHHHHhcCEEEEecccCCCceEEEEccCcCCHHHHHHHHHHHHH
Confidence 332222222233 25788899988 9987322 236799999999999999999999975
|
| >2fq6_A Cystathionine beta-lyase; protein-inhibitor complex, PLP cofactor covalently bound to inhibitor; HET: P3F; 1.78A {Escherichia coli} SCOP: c.67.1.3 PDB: 2gqn_A* 1cl1_A* 1cl2_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=4.1e-17 Score=188.73 Aligned_cols=211 Identities=14% Similarity=0.103 Sum_probs=145.4
Q ss_pred HHHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHH----HHHCCcEEEEEc
Q 001989 633 MFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPAT----AAMCGMKIVSVG 708 (985)
Q Consensus 633 ~~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~----a~~~G~~vv~v~ 708 (985)
..+++++.+++++|.+.. +.+++|++|+..++.++ ..++|+||++...|+..... ++..|++++.++
T Consensus 83 ~~~~le~~lA~l~g~~~~-i~~ssGt~Ai~~al~~l--------~~~Gd~Vi~~~~~y~~~~~~~~~~l~~~G~~v~~v~ 153 (415)
T 2fq6_A 83 THFSLQQAMCELEGGAGC-VLFPCGAAAVANSILAF--------IEQGDHVLMTNTAYEPSQDFCSKILSKLGVTTSWFD 153 (415)
T ss_dssp HHHHHHHHHHHHHTCSEE-EEESSHHHHHHHHHHTT--------CCTTCEEEEETTSCHHHHHHHHHTGGGGTCEEEEEC
T ss_pred hHHHHHHHHHHHhCCCeE-EEeCCHHHHHHHHHHHH--------hCCCCEEEEeCCCchHHHHHHHHHHHHcCcEEEEEC
Confidence 356789999999998754 55577877664443322 14689999988777654433 245799999998
Q ss_pred CCCCCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccCHHHHHHHHHH--cCCEEEEEccccccccCCCCCCccCCc
Q 001989 709 TDAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHD--NGGQVYMDGANMNAQVGLTSPGYIGAD 785 (985)
Q Consensus 709 ~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~di~eI~~la~~--~galliVD~a~~~~~~~l~~pg~~g~D 785 (985)
.+ |+++|+++|+ ++|++|++++| |++|.+. |+++|+++||+ +|+++++|++|..+. ...|-.+|+|
T Consensus 154 ~~-----d~~~le~ai~---~~tklV~~e~~~NptG~v~-dl~~I~~la~~~~~g~~livD~a~a~~~--~~~p~~~g~D 222 (415)
T 2fq6_A 154 PL-----IGADIVKHLQ---PNTKIVFLESPGSITMEVH-DVPAIVAAVRSVVPDAIIMIDNTWAAGV--LFKALDFGID 222 (415)
T ss_dssp TT-----CGGGGGGGCC---TTEEEEEEESSCTTTCCCC-CHHHHHHHHHHHCTTCEEEEECTTTTTT--SSCGGGGTCS
T ss_pred CC-----CHHHHHHhhc---cCCcEEEEECCCCCCCEee-cHHHHHHHHHhhcCCCEEEEECCCcccc--cCCccccCCe
Confidence 74 8999999997 78999999998 5799998 89999999999 999999999985332 2356678999
Q ss_pred EEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcH
Q 001989 786 VCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGS 865 (985)
Q Consensus 786 i~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~ 865 (985)
++++|+||+|+.+ |+..+|++++++++.+.+.... . ..+...+ +. .+|..+. +.
T Consensus 223 iv~~S~sK~lg~~---g~~~~G~l~~~~~~~~~l~~~~-----------~--~~G~~~~-----~~---~a~~~~~--~l 276 (415)
T 2fq6_A 223 VSIQAATKYLVGH---SDAMIGTAVCNARCWEQLRENA-----------Y--LMGQMVD-----AD---TAYITSR--GL 276 (415)
T ss_dssp EEEEETTTTTTCS---SSCCCEEEEECTTTHHHHHHHH-----------H--HTTCCCC-----HH---HHHHHHH--HH
T ss_pred EEEEeCccccCCC---CCceEEEEEeCHHHHHHHHHHH-----------H--hcCCCCC-----HH---HHHHHHh--hh
Confidence 9999999998421 2223789998876554332100 0 0111111 11 1222222 22
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcc
Q 001989 866 KGLTEASKIAILNANYMAKRLEKH 889 (985)
Q Consensus 866 eGl~~~~~~~~~~a~~l~~~L~~g 889 (985)
+.+..+.++..+++.++++.|++.
T Consensus 277 ~~l~~r~~~~~~n~~~l~~~L~~~ 300 (415)
T 2fq6_A 277 RTLGVRLRQHHESSLKVAEWLAEH 300 (415)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHcC
Confidence 345556667778888899988764
|
| >3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate aminotrans structural genomics, protein structure initiative; 1.61A {Geobacter metallireducens gs-15} | Back alignment and structure |
|---|
Probab=99.73 E-value=8.1e-16 Score=174.07 Aligned_cols=266 Identities=12% Similarity=0.067 Sum_probs=188.2
Q ss_pred HHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCchh---
Q 001989 214 LNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDLKD--- 290 (985)
Q Consensus 214 ~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~~~--- 290 (985)
.++++.+|+++|.++.++.+++|+|.+++.++.++ . ++||+|+++...|+.+...++. .|.+++.++.++
T Consensus 68 ~~lr~~la~~~g~~~~~i~~t~g~~~al~~~~~~l-~--~~gd~Vl~~~p~~~~~~~~~~~----~g~~~~~v~~~~~~~ 140 (360)
T 3hdo_A 68 QKLREVAGELYGFDPSWIIMANGSDEVLNNLIRAF-A--AEGEEIGYVHPSYSYYGTLAEV----QGARVRTFGLTGDFR 140 (360)
T ss_dssp HHHHHHHHHHHTCCGGGEEEESSHHHHHHHHHHHH-C--CTTCEEEEESSSCTHHHHHHHH----HTCEEEEECBCTTSS
T ss_pred HHHHHHHHHHhCcCcceEEEcCCHHHHHHHHHHHH-h--CCCCEEEEcCCChHHHHHHHHH----CCCEEEEeeCCCCCC
Confidence 36788999999988889999999998888777655 2 3889999999999998887754 488888887632
Q ss_pred hhcc-C-CCEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCCCC----CcccceEEEecC-cccccc
Q 001989 291 IDYK-S-GDVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKPP----GELGADIVVGSA-QRFGVP 362 (985)
Q Consensus 291 l~~l-~-~~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~~~----~~~GaDi~v~s~-k~lg~P 362 (985)
++++ . .++++|++.+| |.+|.+.|+++|.++|+++|+++++|. ..+...-..+ ...+.+++++|. |.|+.
T Consensus 141 ~~~l~~~~~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~li~De-~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~- 218 (360)
T 3hdo_A 141 IAGFPERYEGKVFFLTTPNAPLGPSFPLEYIDELARRCAGMLVLDE-TYAEFAESNALELVRRHENVVVTRTLSKSYSL- 218 (360)
T ss_dssp BTTCCSSBCSSEEEEESSCTTTCCCCCHHHHHHHHHHBSSEEEEEC-TTGGGSSCCCTHHHHHCSSEEEEEESTTTTSC-
T ss_pred HHHHHhhcCCCEEEEeCCCCCCCCCcCHHHHHHHHHHCCCEEEEEC-ChHhhCCcchhHHhccCCCEEEEecchHhhcC-
Confidence 2221 1 23568888888 789999999999999999999999953 3221111111 235667888887 87753
Q ss_pred CCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcch
Q 001989 363 MGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEG 442 (985)
Q Consensus 363 ~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~G 442 (985)
+|..+|++.+++++.+.+... . ...+.| .....+..++ +. ..+.
T Consensus 219 ---~G~r~G~~~~~~~~~~~~~~~----------~----------------~~~~~~---~~~~~a~~~~--l~--~~~~ 262 (360)
T 3hdo_A 219 ---AGMRIGLAIARPEVIAALDKI----------R----------------DHYNLD---RLAQAACVAA--LR--DQAY 262 (360)
T ss_dssp ---TTSCCEEEECCHHHHHHHHHH----------S----------------CSCCSC---HHHHHHHHHH--HH--CHHH
T ss_pred ---CccceeeEeeCHHHHHHHHHh----------C----------------CCCCCC---HHHHHHHHHH--hc--CHHH
Confidence 344578999888877655100 0 000111 1112222222 22 2446
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCeEEcCCCCcceEEEecCC--HHHHHHHHHHcCceeeeec----CCeEEEEeccCCC
Q 001989 443 LKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDTVKVKCAD--AHAIASAAYKIEMNLRVVD----SNTVTASFDETTT 516 (985)
Q Consensus 443 l~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~--~~~v~~~L~~~GI~~~~~~----~~~lris~t~~~t 516 (985)
++++.++..++.+++.+.|+++| +++... ...-+.+..++ ..++.+.|.++||.++... ++.+|++++ |
T Consensus 263 ~~~~~~~~~~~~~~l~~~L~~~~-~~~~~~-~~~~~~~~~~~~~~~~l~~~l~~~gi~v~~~~~~~~~~~iRis~~---~ 337 (360)
T 3hdo_A 263 LSECCRRIRETREWFTTELRSIG-YDVIPS-QGNYLFATPPDRDGKRVYDGLYARKVLVRHFSDPLLAHGMRISIG---T 337 (360)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTT-CEECCC-SSSEEEEECTTCCHHHHHHHHHHTTEECBCCCSTTTTTSEEEECC---C
T ss_pred HHHHHHHHHHHHHHHHHHHHHCC-CEEcCC-CccEEEEECCCCCHHHHHHHHHHCCEEEEECCCCCCCCEEEEEcC---C
Confidence 78899999999999999999986 887632 22234455554 8899999999999886532 478999987 9
Q ss_pred HHHHHHHHHHHhC
Q 001989 517 LEDVDKLFIVFAG 529 (985)
Q Consensus 517 ~edId~li~aL~~ 529 (985)
++|+|+|+++|+.
T Consensus 338 ~~e~~~l~~al~~ 350 (360)
T 3hdo_A 338 REEMEQTLAALKE 350 (360)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999974
|
| >3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence, acyltransferase, aminotransferase, pyridoxal PHO transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A | Back alignment and structure |
|---|
Probab=99.73 E-value=4.4e-17 Score=187.92 Aligned_cols=274 Identities=12% Similarity=0.081 Sum_probs=187.8
Q ss_pred hhHHHHHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEe
Q 001989 207 QGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVS 286 (985)
Q Consensus 207 qg~l~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v 286 (985)
.|..+...++++.+++++|.+. ..++.+||.+.++++.++ .++||+|+++...|+++...++. .|.+++.+
T Consensus 100 ~g~~~~~~~l~~~la~~~g~~~--~i~~~sGt~a~~~~l~~~---~~~gd~Vl~~~~~~~~~~~~~~~----~g~~~~~~ 170 (409)
T 3kki_A 100 LQNDYDKPMIEKRLAKFTGFDE--CLLSQSGWNANVGLLQTI---CQPNTNVYIDFFAHMSLWEGARY----ANAQAHPF 170 (409)
T ss_dssp GCSTTTSCHHHHHHHHHHTCSE--EEEESCHHHHHHHHHHHH---CCTTCEEEEETTSCHHHHHHHHH----TTCEEEEE
T ss_pred cCCcHHHHHHHHHHHHHhCCCe--EEEecchHHHHHHHHHHh---cCCCCEEEECCCcCHHHHHHHHH----cCCeEEEe
Confidence 3444445567889999999875 456677777776665554 24899999999999999988753 47777776
Q ss_pred C---chhhhc-cCC-CEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCCCC---------CcccceE
Q 001989 287 D---LKDIDY-KSG-DVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKPP---------GELGADI 351 (985)
Q Consensus 287 ~---~~~l~~-l~~-~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~~~---------~~~GaDi 351 (985)
+ +++|++ +.+ ++++|++.+| |++|.+.|+++|.++|+++|+++++| +..+.+.+.+. ...++||
T Consensus 171 ~~~d~~~le~~l~~~~~~~vi~~~~~nptG~~~~l~~l~~la~~~~~~li~D-e~~~~g~~g~~g~~~~~~~~~~~~~di 249 (409)
T 3kki_A 171 MHNNCDHLRMLIQRHGPGIIVVDSIYSTLGTIAPLAELVNISKEFGCALLVD-ESHSLGTHGPNGAGLLAELGLTREVHF 249 (409)
T ss_dssp CTTCHHHHHHHHHHHCSCEEEEESBCTTTCCBCCHHHHHHHHHHHTCEEEEE-CTTTTTTSSGGGCCHHHHHTCGGGCSE
T ss_pred cCCCHHHHHHHHHhcCCeEEEECCCCCCCCCcCCHHHHHHHHHHcCCEEEEE-CCccccccCCCCCcchhhcCCCCCCCE
Confidence 4 456766 543 4788888887 67999999999999999999999995 34454433211 1235799
Q ss_pred EEecC-ccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHH
Q 001989 352 VVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANM 430 (985)
Q Consensus 352 ~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~ 430 (985)
+++|. |.|+++ .|++.+++++.+.+... ...+. . ++ . .++....+..
T Consensus 250 ~~~s~sK~~~~~-------gg~v~~~~~~~~~~~~~----------~~~~~------------~-~~-~-~~~~~~aa~~ 297 (409)
T 3kki_A 250 MTASLAKTFAYR-------AGAIWCNNEVNRCVPFI----------SYPAI------------F-SS-T-LLPYEAAGLE 297 (409)
T ss_dssp EEEESSSTTCSS-------CEEEEESSSGGGTHHHH----------CHHHH------------H-SB-C-CCHHHHHHHH
T ss_pred EEeecchhhCCC-------ceEEEECHHHHHHHHHh----------CcCcc------------c-cC-C-CcHHHHHHHH
Confidence 99997 877532 38888887766544100 00000 0 00 0 1112233333
Q ss_pred HHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCCCcceEEEecCC---HHHHHHHHHHcCceeeee-----
Q 001989 431 AAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDTVKVKCAD---AHAIASAAYKIEMNLRVV----- 502 (985)
Q Consensus 431 aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~---~~~v~~~L~~~GI~~~~~----- 502 (985)
+++ ..+.. .+++.++..++.+++.+.|+++| +++... ...+.+..+. ..++.++|.++||.+...
T Consensus 298 aal--~~~~~--~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~--~~~~~~~~~~~~~~~~~~~~L~~~Gv~v~~~~~~~~ 370 (409)
T 3kki_A 298 TTL--EIIES--ADNRRQHLDRMARKLRIGLSQLG-LTIRSE--SQIIGLETGDERNTEKVRDYLESNGVFGSVFCRPAT 370 (409)
T ss_dssp HHH--HHHHH--CHHHHHHHHHHHHHHHHHHHTTT-CCCCCS--SSEEEEEEESHHHHHHHHHHHHHTTEECEEECTTSS
T ss_pred HHH--HHHhc--CHHHHHHHHHHHHHHHHHHHHcC-CccCCC--CCEEEEEeCCHHHHHHHHHHHHHCCceEeeeCCCCc
Confidence 333 22211 25778888999999999999997 776532 2234444443 677999999999987542
Q ss_pred --cCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 503 --DSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 503 --~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
..+.+|++++..+|++||++++++|.+
T Consensus 371 ~~~~~~iRi~~~~~~t~e~i~~~~~~l~~ 399 (409)
T 3kki_A 371 SKNKNIIRLSLNSDVNDEQIAKIIEVCSD 399 (409)
T ss_dssp CTTCEEEEEECCTTCCHHHHHHHHHHHHH
T ss_pred CCCCcEEEEEccCCCCHHHHHHHHHHHHH
Confidence 136899999999999999999999974
|
| >3jzl_A Putative cystathionine beta-lyase involved in ALU resistance; putative cystathionine beta-lyase involved in aluminum resis structural genomics; HET: LLP; 1.91A {Listeria monocytogenes str} PDB: 3fd0_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=5.5e-17 Score=186.91 Aligned_cols=258 Identities=14% Similarity=0.027 Sum_probs=173.3
Q ss_pred HHHHHHHHHHHhCCCcccee--cCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcC-CCCcccHH----------HHHHC
Q 001989 634 FNNLGEWLCTITGFDSFSLQ--PNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPV-SAHGTNPA----------TAAMC 700 (985)
Q Consensus 634 ~~e~~~~la~l~G~~~~~~~--~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~-~~Hg~~~~----------~a~~~ 700 (985)
.+++++.+++++|.+.+.++ ++||++|+..++.++. .++|+||+++ ..|+.... .++..
T Consensus 61 ~~~Le~~lA~l~g~e~alv~p~~~sGt~Ai~~al~all--------~~GD~Vl~~~~~~y~~~~~~~~~~g~~~~~l~~~ 132 (409)
T 3jzl_A 61 RDTLERVYATVFKTEAALVRPQIISGTHAISTVLFGIL--------RPDDELLYITGQPYDTLEEIVGIRKQGQGSLKDF 132 (409)
T ss_dssp HHHHHHHHHHHHTCSEEEEETTSCSHHHHHHHHHHHHC--------CTTCEEEECSSSCCTTHHHHHTSSSSSSSCTGGG
T ss_pred HHHHHHHHHHHhCCCcEEEECCCccHHHHHHHHHHHhc--------CCCCEEEEeCCCCcHhHHHHHhcccchhhHHHHc
Confidence 55788899999999876554 6788887755544331 4789999987 66665543 33567
Q ss_pred CcEEEEEcCCCCCCCCHHHHHHHHHhcCCCEEEEEEEc----C-CCccccccCHHHHHHHHHH--cCCEEEEEccccccc
Q 001989 701 GMKIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTY----P-STHGVYEEGIDEICKIIHD--NGGQVYMDGANMNAQ 773 (985)
Q Consensus 701 G~~vv~v~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~----p-n~~G~i~~di~eI~~la~~--~galliVD~a~~~~~ 773 (985)
|++++.++.+++|.+|+++|+++++ ++|++|++++ | |.+|.+. |+++|+++||+ +|++++||+++....
T Consensus 133 G~~~~~v~~~~~g~~d~e~l~~ai~---~~tklV~i~~s~g~p~nptg~v~-~l~~I~~la~~~~~~~~livD~a~~~~~ 208 (409)
T 3jzl_A 133 HIGYSSVPLLENGDVDFPRIAKKMT---PKTKMIGIQRSRGYADRPSFTIE-KIKEMIVFVKNINPEVIVFVDNCYGEFV 208 (409)
T ss_dssp TCEEEECCCCTTSCCCHHHHHHHCC---TTEEEEEEECSCTTSSSCCCCHH-HHHHHHHHHHHHCTTCEEEEECTTCTTT
T ss_pred CCEEEEeCCCCCCCcCHHHHHHhcc---CCCeEEEEECCCCCCCCCcCccc-cHHHHHHHHHhhCCCCEEEEeCCccccc
Confidence 9999999998889999999999997 7899999998 8 4799998 89999999999 999999999975322
Q ss_pred cCCCCCCccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHH
Q 001989 774 VGLTSPGYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALIL 853 (985)
Q Consensus 774 ~~l~~pg~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~ 853 (985)
. ...|..+|+|++++|+||+|+.+ |.|.+|++++++++.+.+...... ...+...+...+.
T Consensus 209 ~-~~~p~~~g~Div~~S~sK~lgg~---~~~~GG~v~~~~~li~~l~~~~~~-----------~~~g~~~g~~~~~---- 269 (409)
T 3jzl_A 209 E-YQEPPEVGADIIAGSLIKNPGGG---LAKTGGYIAGKEALVDLCGYRLTT-----------PGIGREAGASLYS---- 269 (409)
T ss_dssp S-SCCSGGGTCSEEEEETTSGGGTT---TCSSCEEEEECHHHHHHHHHHHSC-----------TTTGGGCCCCTTC----
T ss_pred c-cCCccccCCeEEEECccccCCcc---CCceEEEEEeCHHHHHHHHHHhcc-----------ccccccccccHHH----
Confidence 1 23567789999999999998521 225679999998766544211000 0000000000101
Q ss_pred HHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeE--EEEEecCccccCCCCHHHHHHHHHHC
Q 001989 854 PISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHE--FIVDLRGLKNTAGIEPEDVAKRLMDY 930 (985)
Q Consensus 854 ~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~--~iv~~~~~~~~~g~~~~~v~~~L~~~ 930 (985)
+++.+..+ +.+..+.++..+++.++++.|++ ++++ ++++ ....+. +.+.+.. ......+++.|.+.
T Consensus 270 --~~~~l~gl--~~~~~r~~~~~~~a~~la~~L~~~g~~v-~p~~-~~~~~~~i~~i~l~~-----~~~~~~~~~~L~~~ 338 (409)
T 3jzl_A 270 --LLEMYQGF--FLAPHVTAQAIKGARFTAAMLAEFGVEA-DPVW-DAPRTDLIQSVSFHN-----KEKMVAFAQAIQAA 338 (409)
T ss_dssp --HHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHTTCEE-ESCT-TSCCSSSCCEEECSC-----HHHHHHHHHHHHHT
T ss_pred --HHHHHHHH--hhHHHHHHHHHHHHHHHHHHHHhCCCcc-cCCC-CCCCccEEEEEEeCC-----HHHHHHHHHHHHhc
Confidence 11222222 23455667788999999999987 6665 4432 111111 2233321 12356788889887
Q ss_pred CCc
Q 001989 931 GFH 933 (985)
Q Consensus 931 Gi~ 933 (985)
...
T Consensus 339 ~~~ 341 (409)
T 3jzl_A 339 SPV 341 (409)
T ss_dssp SSS
T ss_pred Ccc
Confidence 543
|
| >1v2d_A Glutamine aminotransferase; PLP, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1v2e_A* 1v2f_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=6.1e-16 Score=176.40 Aligned_cols=271 Identities=12% Similarity=0.097 Sum_probs=187.3
Q ss_pred HHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc-----
Q 001989 214 LNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL----- 288 (985)
Q Consensus 214 ~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~----- 288 (985)
.++++.+|+++|.++.++.+++|+|.+++.++.++ . ++||+|+++...|+++...++. .|++++.++.
T Consensus 64 ~~l~~~la~~~~~~~~~v~~~~g~~~a~~~~~~~~-~--~~gd~Vl~~~~~~~~~~~~~~~----~g~~~~~v~~~~~~~ 136 (381)
T 1v2d_A 64 PALREALAEEFAVEPESVVVTSGATEALYVLLQSL-V--GPGDEVVVLEPFFDVYLPDAFL----AGAKARLVRLDLTPE 136 (381)
T ss_dssp HHHHHHHHHHHTSCGGGEEEESSHHHHHHHHHHHH-C--CTTCEEEEEESCCTTHHHHHHH----TTCEEEEEECEEETT
T ss_pred HHHHHHHHHhcCCChhhEEEcCChHHHHHHHHHHh-C--CCCCEEEEcCCCchhHHHHHHH----cCCEEEEEeCCCCCc
Confidence 46788999999998888999999998888777654 2 3789999999999998877643 5777766643
Q ss_pred ------hhhhc-cCCCEeEEEEEcC-CCCeeecc---HHHHHHHHHhCCcEEEEEecCccccCCC----CCC--cccceE
Q 001989 289 ------KDIDY-KSGDVCGVLVQYP-GTEGEVLD---YGDFIKNAHANGVKVVMATDLLALTILK----PPG--ELGADI 351 (985)
Q Consensus 289 ------~~l~~-l~~~t~~V~v~~p-n~~G~v~d---i~~I~~~a~~~galliV~a~~~~lg~l~----~~~--~~GaDi 351 (985)
++|++ +++++++|++++| |.+|.+.+ +++|+++|+++|+++++|. ..+..... +.. ..+.|+
T Consensus 137 ~~~~d~~~l~~~l~~~~~~v~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De-~~~~~~~g~~~~~~~~~~~~~~~ 215 (381)
T 1v2d_A 137 GFRLDLSALEKALTPRTRALLLNTPMNPTGLVFGERELEAIARLARAHDLFLISDE-VYDELYYGERPRRLREFAPERTF 215 (381)
T ss_dssp EEECCHHHHHTTCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEC-TTTTCBSSSCCCCHHHHCTTTEE
T ss_pred cCCcCHHHHHHhcCcCCEEEEECCCCCCCCCccCHHHHHHHHHHHHHcCCEEEEEc-CccccccCCCCCCHHHhcCCCEE
Confidence 34666 7788999999988 67998864 8999999999999999953 33322111 111 358999
Q ss_pred EEecC-ccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHH
Q 001989 352 VVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANM 430 (985)
Q Consensus 352 ~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~ 430 (985)
+++|. |.|+.| |..+|++++++++++.+... + + ....+.| .....+..
T Consensus 216 ~~~s~sK~~~~~----G~r~G~~~~~~~~~~~~~~~--------------------~-~---~~~~~~~---~~~~~a~~ 264 (381)
T 1v2d_A 216 TVGSAGKRLEAT----GYRVGWIVGPKEFMPRLAGM--------------------R-Q---WTSFSAP---TPLQAGVA 264 (381)
T ss_dssp EEEEHHHHTTCG----GGCCEEEECCTTTHHHHHHH--------------------H-H---HHTSSCC---HHHHHHHH
T ss_pred EEeechhhcCCc----ccceEEEEeCHHHHHHHHHH--------------------H-h---hcccCCC---cHHHHHHH
Confidence 99998 776532 22379999887766554100 0 0 0011111 11222222
Q ss_pred HHHHHHHh-CcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCCCcceEEEecCCHHHHHHHHHHcCceeeee-------
Q 001989 431 AAMYAVYH-GPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDTVKVKCADAHAIASAAYKIEMNLRVV------- 502 (985)
Q Consensus 431 aa~~l~~~-g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~~~L~~~GI~~~~~------- 502 (985)
+++ ... ..++++++.++..++.+++.+.|++.| +++..+....-+.+..++. ++.+.|.++||.+...
T Consensus 265 ~~l--~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~~~~~~~~~~~~-~~~~~l~~~gi~v~~g~~~~~~~ 340 (381)
T 1v2d_A 265 EAL--KLARREGFYEALREGYRRRRDLLAGGLRAMG-LRVYVPEGTYFLMAELPGW-DAFRLVEEARVALIPASAFYLED 340 (381)
T ss_dssp HHH--HHHHHTTHHHHHHHHHHHHHHHHHHHHHHTT-CCEECCSBSSEEEEECTTC-CHHHHHHHTCEECEEGGGGCSSS
T ss_pred HHH--hCcccHHHHHHHHHHHHHHHHHHHHHHHHCC-CEecCCCcceEEEEecChH-hHHHHHHhCCEEEecchHhCCCC
Confidence 222 221 156788999999999999999999987 8776432111234455432 2677778899987542
Q ss_pred -cCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 503 -DSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 503 -~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
..+.+|++++. +++||+++++.|..
T Consensus 341 ~~~~~iRi~~~~--~~~~i~~~~~~l~~ 366 (381)
T 1v2d_A 341 PPKDLFRFAFCK--TEEELHLALERLGR 366 (381)
T ss_dssp CCTTEEEEECCS--CHHHHHHHHHHHHH
T ss_pred CCCCEEEEEeCC--CHHHHHHHHHHHHH
Confidence 24689999986 99999999999874
|
| >2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal phosphate, PLP, RV3290C, lysine amino transferase; HET: PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A* 2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A | Back alignment and structure |
|---|
Probab=99.73 E-value=1.3e-16 Score=186.71 Aligned_cols=299 Identities=11% Similarity=0.116 Sum_probs=187.6
Q ss_pred HHHHHHHHHHHHhC-CCc-cceecCcHHHHHHHHHHHHHHHHHhc----C--CCCCCEEEEcC-CCCcccHHHHHH----
Q 001989 633 MFNNLGEWLCTITG-FDS-FSLQPNAGAAGEYAGLMVIRAYHKAR----G--DHHRNVCIIPV-SAHGTNPATAAM---- 699 (985)
Q Consensus 633 ~~~e~~~~la~l~G-~~~-~~~~~~sGa~a~~a~l~air~~~~~~----g--~~~~~~IIv~~-~~Hg~~~~~a~~---- 699 (985)
...++++.++++++ .+. ..++.+||++|+++++++++.|...+ | ..++++||+.+ .+||........
T Consensus 102 ~~~~la~~la~~~~~~~~~~v~~~~~gseA~~~aik~a~~~~~~~~~~~~~~~~~~~~Vi~~~~~yhg~~~~~~~~~~~~ 181 (449)
T 2cjg_A 102 AMARFVETFARVLGDPALPHLFFVEGGALAVENALKAAFDWKSRHNQAHGIDPALGTQVLHLRGAFHGRSGYTLSLTNTK 181 (449)
T ss_dssp HHHHHHHHHHHHHCCTTCCEEEEESSHHHHHHHHHHHHHHHHHHHHHHTTSCTTCCCEEEEETTCCCCSSTTGGGTCCSC
T ss_pred HHHHHHHHHHHhcCCCCCCEEEEeCchHHHHHHHHHHHHHHhcccccccccccCCCCEEEEECCCcCCcccchhhhcCCc
Confidence 34578888999986 222 34677899999988888777654211 1 11267888865 578755432221
Q ss_pred ----CCc-----EEEEEcCCCC--C--------CCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccC----HHHHHHH
Q 001989 700 ----CGM-----KIVSVGTDAK--G--------NINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEG----IDEICKI 755 (985)
Q Consensus 700 ----~G~-----~vv~v~~d~~--g--------~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~d----i~eI~~l 755 (985)
.++ +++.+|.++. . ..|+++|+++|+++.+++++|+++.. |.+|++. + +++|.++
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vi~ep~~~~~G~~~-~~~~~l~~l~~l 260 (449)
T 2cjg_A 182 PTITARFPKFDWPRIDAPYMRPGLDEPAMAALEAEALRQARAAFETRPHDIACFVAEPIQGEGGDRH-FRPEFFAAMREL 260 (449)
T ss_dssp HHHHTTSCCCCCCEECCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHSTTTEEEEEECSEETTTTCEE-CCHHHHHHHHHH
T ss_pred hhhcccCCCCCCCcEEEcCCCchhhccccchhhHHHHHHHHHHHHhcCCceEEEEEeCcCCCCCCcc-CCHHHHHHHHHH
Confidence 222 5666776431 1 24667799999754468888877654 4689655 5 9999999
Q ss_pred HHHcCCEEEEEccccccccCCCCCC-----ccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCC
Q 001989 756 IHDNGGQVYMDGANMNAQVGLTSPG-----YIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGI 830 (985)
Q Consensus 756 a~~~galliVD~a~~~~~~~l~~pg-----~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~ 830 (985)
|+++|+++|+|++|. +++-..... ...+|++++| |+| | +|++++++++.+.+.....+..
T Consensus 261 ~~~~g~lli~DEv~~-g~g~~g~~~~~~~~~~~~di~t~s--K~l--~-------iG~~~~~~~~~~~l~~~~~~~~--- 325 (449)
T 2cjg_A 261 CDEFDALLIFDEVQT-GCGLTGTAWAYQQLDVAPDIVAFG--KKT--Q-------VCGVMAGRRVDEVADNVFAVPS--- 325 (449)
T ss_dssp HHHTTCEEEEECTTT-TTTTTSSSSTHHHHTCCCSEEEEC--GGG--S-------SEEEEECGGGGGSTTCTTTSTT---
T ss_pred HHHCCcEEEEecccc-CCCccCcceeecccCCCceEEEec--Ccc--c-------EEEEEECHHHhhhhhhcccCCc---
Confidence 999999999999985 222111110 1246888664 887 3 5778888887765432111100
Q ss_pred CCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc---cCC--ee-ecCCCCceeeE
Q 001989 831 PAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK---HYP--IL-FRGVNGTVAHE 904 (985)
Q Consensus 831 ~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~---g~~--l~-~~~~~~~~~~~ 904 (985)
. ..+ ++.+++..++++.+.+..+..++ ..++..++++++.++|++ .+. +. ..+ .+.+
T Consensus 326 ----~--~~~----t~~~n~~~~~aa~aal~~~~~~~---~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~~-~g~~--- 388 (449)
T 2cjg_A 326 ----R--LNS----TWGGNLTDMVRARRILEVIEAEG---LFERAVQHGKYLRARLDELAADFPAVVLDPRG-RGLM--- 388 (449)
T ss_dssp ----S--SCC----SSSSCHHHHHHHHHHHHHHHHHT---HHHHHHHHHHHHHHHHHHHHHHSTTTSEEEEE-ETTE---
T ss_pred ----c--ccc----CCCCCHHHHHHHHHHHHHHHhcc---HHHHHHHHHHHHHHHHHHHHhhCCCceeeEee-ccEE---
Confidence 0 001 11223444555556666554443 345667788889988875 233 21 111 1222
Q ss_pred EEEEecCccccCCCCHHHHHHHHHHCCCccCCCCCCCCCEEEEeccCCCCHHHHHHHHccCChhHHHHhh
Q 001989 905 FIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRL 974 (985)
Q Consensus 905 ~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~ 974 (985)
+.++++. .....++.++|.++|+.+.... .+.+|++|+..+|++|||+ +++.|+++++++
T Consensus 389 ~~~~~~~-----~~~~~~~~~~l~~~Gv~v~~~g---~~~iRi~~~~~~t~e~i~~--~l~~l~~~l~~~ 448 (449)
T 2cjg_A 389 CAFSLPT-----TADRDELIRQLWQRAVIVLPAG---ADTVRFRPPLTVSTAEIDA--AIAAVRSALPVV 448 (449)
T ss_dssp EEEECSS-----HHHHHHHHHHHHHTTEECEEET---TTEEEECCCTTCCHHHHHH--HHHHHHHHHHHH
T ss_pred EEEEECC-----hHHHHHHHHHHHHCCeEEecCC---CCEEEEECCCCCCHHHHHH--HHHHHHHHHHHh
Confidence 2345531 1135689999999999875432 3799999999999999999 888898887653
|
| >3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4} | Back alignment and structure |
|---|
Probab=99.73 E-value=2.5e-17 Score=192.08 Aligned_cols=307 Identities=14% Similarity=0.124 Sum_probs=183.4
Q ss_pred hhHHHHHHHHHHHHHHHhCC--Cccc-eecCcHHHHHHHHHHHHHHHHHhcCCCCCC--------------EEEEc-CCC
Q 001989 628 QGYQEMFNNLGEWLCTITGF--DSFS-LQPNAGAAGEYAGLMVIRAYHKARGDHHRN--------------VCIIP-VSA 689 (985)
Q Consensus 628 ~G~~~~~~e~~~~la~l~G~--~~~~-~~~~sGa~a~~a~l~air~~~~~~g~~~~~--------------~IIv~-~~~ 689 (985)
+|..++.+++.+++.+.+|. +... +++++|++|+..++.++. .+++ +||++ .+.
T Consensus 83 ~g~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~t~al~~~~~~l~--------~~gd~~~~~~~~~~g~~~~vi~~~~p~ 154 (444)
T 3if2_A 83 QGDSAFIDALVGFFNRHYDWNLTSENIALTNGSQNAFFYLFNLFG--------GAFVNEHSQDKESKSVDKSILLPLTPE 154 (444)
T ss_dssp TCCHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHHHHHHHSS--------EEEECC-------CEEEEEEEESSSSC
T ss_pred CCCHHHHHHHHHHHHhhcCCCCCHHHEEEecCcHHHHHHHHHHHh--------CCCccccccccccccccceEEEeCCCC
Confidence 45555555555666555554 3334 455666666644433321 2334 68775 555
Q ss_pred CcccHHH------HHHCCcEEEEEcCCC-CC----CCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccC---HHHHHH
Q 001989 690 HGTNPAT------AAMCGMKIVSVGTDA-KG----NINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEG---IDEICK 754 (985)
Q Consensus 690 Hg~~~~~------a~~~G~~vv~v~~d~-~g----~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~d---i~eI~~ 754 (985)
|..+... ....|.+++.+++++ +| .+|+++|++++.+..+++++|++++| |++|.+. + +++|++
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~~l~~~l~~~~~~~~~v~i~~p~nptG~~~-~~~~l~~i~~ 233 (444)
T 3if2_A 155 YIGYSDVHVEGQHFAAVLPHIDEVTHDGEEGFFKYRVDFEALENLPALKEGRIGAICCSRPTNPTGNVL-TDEEMAHLAE 233 (444)
T ss_dssp CGGGTTCCSSSCCEEECCCEEEEEEETTEEEEEEEECCHHHHHTCHHHHTTCEEEEEEESSCTTTCCCC-CHHHHHHHHH
T ss_pred ccchhhcccccchhhccCceEEecccccccCccccCCCHHHHHHHHHhcCCCceEEEeCCCCCCCCCcC-CHHHHHHHHH
Confidence 5444432 234678888888865 33 79999999984321278999999998 4699987 6 899999
Q ss_pred HHHHcCCEEEEEccccccccCC----CCCCccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCC
Q 001989 755 IIHDNGGQVYMDGANMNAQVGL----TSPGYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGI 830 (985)
Q Consensus 755 la~~~galliVD~a~~~~~~~l----~~pg~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~ 830 (985)
+|+++|+++|+|++|.....+. ..+...+.++++.|+||+ +. +|.++|++++++++.+.+......
T Consensus 234 ~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~-~~----~G~r~G~~~~~~~l~~~~~~~~~~----- 303 (444)
T 3if2_A 234 IAKRYDIPLIIDNAYGMPFPNIIYSDAHLNWDNNTILCFSLSKI-GL----PGMRTGIIVADAKVIEAVSAMNAV----- 303 (444)
T ss_dssp HHHHTTCCEEEECTTCTTTTCCBCSCCCCCCCTTEEEEEESTTT-TC----GGGCCEEEECCHHHHHHHHHHHHH-----
T ss_pred HHHHCCCEEEEECCCCCcccccccccccccCCCCEEEEechhhc-cC----CCCceEEEEECHHHHHHHHHHHHh-----
Confidence 9999999999999985321111 112334678999999996 33 356789999887766544211000
Q ss_pred CCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHH-HHHH-HHHHHHHHHHHHHHHhhcc---CCeeecCCCCceeeEE
Q 001989 831 PAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSK-GLTE-ASKIAILNANYMAKRLEKH---YPILFRGVNGTVAHEF 905 (985)
Q Consensus 831 ~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~e-Gl~~-~~~~~~~~a~~l~~~L~~g---~~l~~~~~~~~~~~~~ 905 (985)
. ..+++..++ .++.+++...... .+++ ..+...++.+++.+.|.+. +.+....+.+..+ +
T Consensus 304 -------~--~~~~~~~~~----~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~g~~--~ 368 (444)
T 3if2_A 304 -------V--NLAPTRFGA----AIATPLVANDRIKQLSDNEIKPFYQKQATLAVKLLKQALGDYPLMIHKPEGAIF--L 368 (444)
T ss_dssp -------H--HSSCCCHHH----HHHHHHHHTSHHHHHHHHTHHHHHHHHHHHHHHHHHHHSSSSSEEEECCCBSSE--E
T ss_pred -------c--cCCCChHHH----HHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHhcccCCceEecCCccEE--E
Confidence 0 001111112 1222233221111 1111 2334455666676666542 2232222222222 3
Q ss_pred EEEecCccccCCCCHHHHHHHHHHCCCccCCCC-C-C---------CCCEEEEeccCCCCHHHHHHHHccCChhHHHHhh
Q 001989 906 IVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMS-W-P---------VPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRL 974 (985)
Q Consensus 906 iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~-~-p---------~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~ 974 (985)
.+.++. .+.+..++.+.|.++||.+.... + + ..+++||+++. +++||++ +++.|++++.++
T Consensus 369 ~~~~~~----~~~~~~~l~~~l~~~gi~v~~g~~~~~~~~~~~~~~~~~~iRis~~~--~~e~i~~--~l~~l~~~~~~~ 440 (444)
T 3if2_A 369 WLWFKD----LPISTLDLYERLKAKGTLIVPSEYFFPGVDVSDYQHAHECIRMSIAA--DEQTLID--GIKVIGEVVREL 440 (444)
T ss_dssp EEEETT----CSSCHHHHHHHHHHTTEECEEGGGSCTTCCCTTCSGGGSEEEEESSS--CHHHHHH--HHHHHHHHHHHH
T ss_pred EEEcCC----CCCCHHHHHHHHHHCCeEEecchhhcCCCCCcccccCCCeEEEEEeC--CHHHHHH--HHHHHHHHHHHH
Confidence 455541 14678899999999999875321 1 1 12689999987 9999999 888999988876
Q ss_pred cc
Q 001989 975 KM 976 (985)
Q Consensus 975 ~~ 976 (985)
..
T Consensus 441 ~~ 442 (444)
T 3if2_A 441 YD 442 (444)
T ss_dssp HT
T ss_pred Hc
Confidence 54
|
| >2fnu_A Aminotransferase; protein-product complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PMP UD1; 1.50A {Helicobacter pylori} SCOP: c.67.1.4 PDB: 2fni_A* 2fn6_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=2.8e-16 Score=178.37 Aligned_cols=280 Identities=11% Similarity=0.021 Sum_probs=187.1
Q ss_pred HHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhh--hhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc-
Q 001989 212 SLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNN--IQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL- 288 (985)
Q Consensus 212 ~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~--~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~- 288 (985)
...++++.+|+++|.+ ++.+++|||.+++.++.+++ .. +||+|+++...|+++...++. .|++++.++.
T Consensus 33 ~~~~l~~~la~~~~~~--~v~~~~ggt~al~~~~~~~~~~~~--~gd~Vl~~~~~~~~~~~~~~~----~g~~~~~~~~~ 104 (375)
T 2fnu_A 33 RSLLFEEALCEFLGVK--HALVFNSATSALLTLYRNFSEFSA--DRNEIITTPISFVATANMLLE----SGYTPVFAGIK 104 (375)
T ss_dssp HHHHHHHHHHHHHTCS--EEEEESCHHHHHHHHHHHSSCCCT--TSCEEEECSSSCTHHHHHHHH----TTCEEEECCBC
T ss_pred HHHHHHHHHHHHhCCC--eEEEeCCHHHHHHHHHHHhcccCC--CCCEEEECCCccHhHHHHHHH----CCCEEEEeccC
Confidence 3567889999999987 68899999988888777653 33 789999999999999998764 5888888764
Q ss_pred -------hhhhc-cCCCEeEEEEEcCCCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCCC---CCcccceEEEec--
Q 001989 289 -------KDIDY-KSGDVCGVLVQYPGTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKP---PGELGADIVVGS-- 355 (985)
Q Consensus 289 -------~~l~~-l~~~t~~V~v~~pn~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~~---~~~~GaDi~v~s-- 355 (985)
++|++ +++++++|++.+| +|.+.|+++|.++|+++|+++++| +.++.+.... .+.++ |+++.+
T Consensus 105 ~~~~~d~~~l~~~i~~~~~~v~~~~~--tG~~~~l~~i~~l~~~~~~~li~D-~a~~~~~~~~~~~~~~~~-~i~~~s~s 180 (375)
T 2fnu_A 105 NDGNIDELALEKLINERTKAIVSVDY--AGKSVEVESVQKLCKKHSLSFLSD-SSHALGSEYQNKKVGGFA-LASVFSFH 180 (375)
T ss_dssp TTSSBCGGGSGGGCCTTEEEEEEECG--GGCCCCHHHHHHHHHHHTCEEEEE-CTTCTTCEETTEETTSSS-SEEEEECC
T ss_pred CCCCCCHHHHHhhcCcCceEEEEeCC--cCCccCHHHHHHHHHHcCCEEEEE-CccccCCeECCeeccccC-CeEEEeCC
Confidence 35656 7788999888887 899999999999999999999995 3445543211 23444 555544
Q ss_pred C-ccccccCCCCCCcEEEEEEc--hhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCcc-chhHHHHHHH
Q 001989 356 A-QRFGVPMGYGGPHAAFLATS--QEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNIC-TAQALLANMA 431 (985)
Q Consensus 356 ~-k~lg~P~~~GGP~~G~l~~~--~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~-t~~~l~a~~a 431 (985)
+ |.+ +| |.|+++++ +++.+++.....+...+. . + + +.+.++.+.. ....+ .+
T Consensus 181 ~~K~~-~~------g~g~~~~~~~~~~~~~~~~~~~~~~~~~-~-~-~-----------~~~~~~~~~~~~~~~~---~~ 236 (375)
T 2fnu_A 181 AIKPI-TT------AEGGAVVTNDSELHEKMKLFRSHGMLKK-D-F-F-----------EGEVKSIGHNFRLNEI---QS 236 (375)
T ss_dssp TTSSS-CC------SSCEEEEESCHHHHHHHHHHTBTTEEES-S-S-S-----------CEEESSCCCBCCCCHH---HH
T ss_pred CCCCc-cc------cCceEEEeCCHHHHHHHHHHHhcCCccc-c-c-c-----------ccccccccccCCCCHH---HH
Confidence 4 544 22 34556663 556554421111100000 0 0 1 1111111110 11222 22
Q ss_pred HHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCC-----CCcceEEEecC-----CHHHHHHHHHHcCceeee
Q 001989 432 AMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGL-----PFFDTVKVKCA-----DAHAIASAAYKIEMNLRV 501 (985)
Q Consensus 432 a~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~-----~~~~~~~~~~~-----~~~~v~~~L~~~GI~~~~ 501 (985)
++ .+...++++++.++..++++++.+.|+++.++++... ..+..+.+.++ ...++.+.|.++||.++.
T Consensus 237 a~--~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~gi~v~~ 314 (375)
T 2fnu_A 237 AL--GLSQLKKAPFLMQKREEAALTYDRIFKDNPYFTPLHPLLKDKSSNHLYPILMHQKFFTCKKLILESLHKRGILAQV 314 (375)
T ss_dssp HH--HHHHHTTHHHHHHHHHHHHHHHHHHHTTCSSEEESGGGCSSCCCCSCEEEEECGGGGGGHHHHHHHHHHTTEECBC
T ss_pred HH--HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccCCCCCCCcceEEEEEEeCccccchHHHHHHHHHHCCCCccc
Confidence 22 1222467889999999999999999999833888632 11122333333 467899999999998762
Q ss_pred ec-------------------------CCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 502 VD-------------------------SNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 502 ~~-------------------------~~~lris~t~~~t~edId~li~aL~~ 529 (985)
.. .+.+|++++..+|++|+++++++|.+
T Consensus 315 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~lRi~~~~~~t~~~i~~~~~~l~~ 367 (375)
T 2fnu_A 315 HYKPIYQYQLYQQLFNTAPLKSAEDFYHAEISLPCHANLNLESVQNIAHSVLK 367 (375)
T ss_dssp CCCCGGGSHHHHHHHCCCCCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHH
T ss_pred cccccccchhhhcCCCccCChHHHHHHhCEEEecCCCCCCHHHHHHHHHHHHH
Confidence 10 15799999999999999999999974
|
| >3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like fold structural genomics, joint center for structural genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.2e-16 Score=185.57 Aligned_cols=302 Identities=11% Similarity=0.076 Sum_probs=187.1
Q ss_pred HHHHHHHHHHhCCCccceecCcH-HHHHHHHHHHHHHHHHh-cCC------CCCCEEEEcCCCCcccHHHHHHCCcEEEE
Q 001989 635 NNLGEWLCTITGFDSFSLQPNAG-AAGEYAGLMVIRAYHKA-RGD------HHRNVCIIPVSAHGTNPATAAMCGMKIVS 706 (985)
Q Consensus 635 ~e~~~~la~l~G~~~~~~~~~sG-a~a~~a~l~air~~~~~-~g~------~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~ 706 (985)
.++++.++++++.+...+..++| +++.. ...+++.+... .|. .++++|+++++.|..+...++..|++++.
T Consensus 81 ~~lr~~ia~~~~~~~~~i~~t~G~~~al~-~~~~~~~l~~~~~g~~~~~~~~~gd~V~v~~p~y~~~~~~~~~~g~~~~~ 159 (427)
T 3ppl_A 81 VDIRQIWADLLGVPVEQVLAGDASSLNIM-FDVISWSYIFGNNDSVQPWSKEETVKWICPVPGYDRHFSITERFGFEMIS 159 (427)
T ss_dssp HHHHHHHHHHHTSCGGGEEECSSCHHHHH-HHHHHHHHHHCCTTCSSCGGGSSCCEEEEEESCCHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHhCCCcceEEEeCCcHHHHH-HHHHHHHHhccCCcccccccCCCCCEEEEcCCCcHHHHHHHHHcCCEEEE
Confidence 46778889988988766555444 44441 01223332210 100 02789999988777777778889999999
Q ss_pred EcCCCCCCCCHHHHHHHHHhcCCCEEEEEEE-cC-CCccccccCHH---HHHHHH-HHcCCEEEEEcccccc-ccCCCC-
Q 001989 707 VGTDAKGNINIEELRKAAEANRDNLSTLMVT-YP-STHGVYEEGID---EICKII-HDNGGQVYMDGANMNA-QVGLTS- 778 (985)
Q Consensus 707 v~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~-~p-n~~G~i~~di~---eI~~la-~~~galliVD~a~~~~-~~~l~~- 778 (985)
+|++++| +|+++|+++++ .+++++|+++ +| |++|.+. +.+ +|+++| +++|+++|+|+++... ..+-..
T Consensus 160 v~~~~~g-~d~~~l~~~l~--~~~~~~v~~~p~~~NPtG~~~-~~~~~~~l~~~a~~~~~~~ii~De~y~~~~~~~~~~~ 235 (427)
T 3ppl_A 160 VPMNEDG-PDMDAVEELVK--NPQVKGMWVVPVFSNPTGFTV-TEDVAKRLSAMETAAPDFRVVWDNAYAVHTLTDEFPE 235 (427)
T ss_dssp EEEETTE-ECHHHHHHHTT--STTEEEEEECCSSCTTTCCCC-CHHHHHHHHHCCCSSTTCEEEEECTTTTCBSSSCCCC
T ss_pred eCCCCCC-CCHHHHHHHHh--cCCCeEEEECCCCCCCCCccC-CHHHHHHHHHHHhhcCCCEEEEECCCcccccCCCCCC
Confidence 9998776 99999999994 2688888866 55 5799987 555 888888 9999999999988421 111110
Q ss_pred ----------CCccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchh
Q 001989 779 ----------PGYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWG 848 (985)
Q Consensus 779 ----------pg~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g 848 (985)
++..+.++++.|++|+ .. +|.++|++++++++.+.+...... ...+++..+
T Consensus 236 ~~~~~~~~~~~~~~~~~i~~~S~SK~-~~----~G~r~G~~~~~~~l~~~~~~~~~~--------------~~~~~~~~~ 296 (427)
T 3ppl_A 236 VIDIVGLGEAAGNPNRFWAFTSTSKI-TL----AGAGVSFFLTSAENRKWYTGHAGI--------------RGIGPNKVN 296 (427)
T ss_dssp CCCHHHHHHHTTCTTSEEEEEESTTT-SC----TTSSCEEEECCHHHHHHHHHHHHH--------------HCSCCCHHH
T ss_pred ccchhhhhhccCCCCcEEEEechhhc-cC----cCccEEEEEcCHHHHHHHHHHhhc--------------ccCCCCHHH
Confidence 0133567889999998 33 367899999887766544211000 011111111
Q ss_pred hhHHHHHHHHHHHHhc--HHHHHHHHHHHHHHHHHHHHHhhcc---C-CeeecCCCCceeeEEEEEecCccccCCCCHHH
Q 001989 849 SALILPISYTYIAMMG--SKGLTEASKIAILNANYMAKRLEKH---Y-PILFRGVNGTVAHEFIVDLRGLKNTAGIEPED 922 (985)
Q Consensus 849 ~~~~~~~a~a~l~~lg--~eGl~~~~~~~~~~a~~l~~~L~~g---~-~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~ 922 (985)
+ .++..++...+ .+.+++..+...++.+++.+.|.+. . .+.+..+.+..+ +.++++ +.+..+
T Consensus 297 q----~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~l~~~~~~~~~~p~~g~~--~~~~~~------~~~~~~ 364 (427)
T 3ppl_A 297 Q----LAHARYFGDAEGVRAVMRKHAASLAPKFNKVLEILDSRLAEYGVAQWTVPAGGYF--ISLDVV------PGTASR 364 (427)
T ss_dssp H----HHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTCCEECCCSBSSC--EEEECS------TTCHHH
T ss_pred H----HHHHHHHhChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEeCCCccEE--EEEECC------cchHHH
Confidence 2 11222222111 1223344444555666666666541 1 122222223222 346664 226788
Q ss_pred HHHHHHHCCCccCC--CCCC-----CCCEEEEeccCCCCHHHHHHHHccCChhHHHHhhc
Q 001989 923 VAKRLMDYGFHGPT--MSWP-----VPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRLK 975 (985)
Q Consensus 923 v~~~L~~~Gi~~~~--~~~p-----~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~~ 975 (985)
+.+.|.++||.+.. ..++ ..+++||++... +++||++ +++.|++++.++.
T Consensus 365 ~~~~l~~~gv~v~~~g~~~~~~~~~~~~~~Ris~~~~-~~~~i~~--~~~~l~~~l~~~~ 421 (427)
T 3ppl_A 365 VAELAKEAGIALTGAGSSYPLRQDPENKNLRLAPSLP-PVEELEV--AMDGVATCVLLAA 421 (427)
T ss_dssp HHHHHHHTTEECCCTTTTSGGGCCTTSCEEEECCSSS-CHHHHHH--HHHHHHHHHHHHH
T ss_pred HHHHHHHCCCEEecCcCcCCCCCCCCCCeEEEECCCC-CHHHHHH--HHHHHHHHHHHHH
Confidence 99999999998754 1122 358999999665 9999999 7788888887653
|
| >3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum} | Back alignment and structure |
|---|
Probab=99.73 E-value=4.2e-16 Score=178.86 Aligned_cols=275 Identities=12% Similarity=0.134 Sum_probs=192.7
Q ss_pred hhHHHHHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEe
Q 001989 207 QGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVS 286 (985)
Q Consensus 207 qg~l~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v 286 (985)
+|..+...++++.+++++|.+ ++.+++|||.+++.++.++ .++||+|+++...|+++...++. .|.+++.+
T Consensus 84 ~g~~~~~~~l~~~la~~~g~~--~v~~~~ggt~a~~~~~~~~---~~~gd~V~~~~p~~~~~~~~~~~----~g~~~~~v 154 (398)
T 3a2b_A 84 NGTLDIHVELEEKLSAYVGKE--AAILFSTGFQSNLGPLSCL---MGRNDYILLDERDHASIIDGSRL----SFSKVIKY 154 (398)
T ss_dssp TCCCHHHHHHHHHHHHHHTCS--EEEEESSHHHHHHHHHHHS---SCTTCEEEEETTCCHHHHHHHHH----SSSEEEEE
T ss_pred cCCcHHHHHHHHHHHHHhCCC--cEEEECCHHHHHHHHHHHH---hCCCCEEEECCccCHHHHHHHHH----cCCceEEe
Confidence 454566677889999999975 6889999998777766554 23889999999999999888753 57888887
Q ss_pred Cc---hhhhc-cCC----CEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCC----CC-Ccc----c
Q 001989 287 DL---KDIDY-KSG----DVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILK----PP-GEL----G 348 (985)
Q Consensus 287 ~~---~~l~~-l~~----~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~----~~-~~~----G 348 (985)
+. ++|++ +++ ++++|++.+| |.+|.+.|+++|.++|+++|+++++| +..+.+... +. ..+ +
T Consensus 155 ~~~d~~~l~~~l~~~~~~~~~~v~~~~~~nptG~~~~~~~l~~~~~~~~~~li~D-e~~~~~~~~~~~~~~~~~~~~~~~ 233 (398)
T 3a2b_A 155 GHNNMEDLRAKLSRLPEDSAKLICTDGIFSMEGDIVNLPELTSIANEFDAAVMVD-DAHSLGVIGHKGAGTASHFGLNDD 233 (398)
T ss_dssp CTTCHHHHHHHHHTSCSSSCEEEEEESBCTTTCCBCCHHHHHHHHHHHTCEEEEE-CTTTTTTSSGGGCCHHHHHTCGGG
T ss_pred CCCCHHHHHHHHHhhccCCceEEEEeCCCCCCCCccCHHHHHHHHHHcCcEEEEE-CCCcccccCCCCCchHhhcCCCcC
Confidence 64 56665 543 7899998887 67999999999999999999999995 344444321 11 112 3
Q ss_pred ceEEEecC-ccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHH
Q 001989 349 ADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALL 427 (985)
Q Consensus 349 aDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~ 427 (985)
+|++++|. |.|+ | || |++++++++++.+.... . ++ ...++++. ....
T Consensus 234 ~di~~~s~sK~~~-~-----~G-G~~~~~~~~~~~l~~~~----------~----------~~--~~~~~~~~---~~~a 281 (398)
T 3a2b_A 234 VDLIMGTFSKSLA-S-----LG-GFVAGDADVIDFLKHNA----------R----------SV--MFSASMTP---ASVA 281 (398)
T ss_dssp CSEEEEESSSTTC-S-----SC-EEEEECHHHHHHHHHHC----------H----------HH--HSSBCCCH---HHHH
T ss_pred CeEEEeccccccc-C-----CC-cEEEeCHHHHHHHHHhc----------c----------cc--eecCCCCH---HHHH
Confidence 79999998 7665 2 23 89999988776541100 0 00 00011111 1111
Q ss_pred HHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCCCcceEEEecCC---HHHHHHHHHHcCceeeeec-
Q 001989 428 ANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDTVKVKCAD---AHAIASAAYKIEMNLRVVD- 503 (985)
Q Consensus 428 a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~---~~~v~~~L~~~GI~~~~~~- 503 (985)
+..+++ ..+ +.++++.++..++.+++.+.|+++| +++..+ ...-+.+..+. ..++.+.|.++||.+....
T Consensus 282 ~~~~~l--~~~--~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~-~g~~~~~~~~~~~~~~~l~~~l~~~gi~v~~~~~ 355 (398)
T 3a2b_A 282 STLKAL--EII--QNEPEHIEKLWKNTDYAKAQLLDHG-FDLGAT-ESPILPIFIRSNEKTFWVTKMLQDDGVFVNPVVS 355 (398)
T ss_dssp HHHHHH--HHH--HHCTHHHHHHHHHHHHHHHHHHHTT-CCBCSC-CSSEEEEECCCHHHHHHHHHHHHHTTEECEEECT
T ss_pred HHHHHH--HHH--hhCHHHHHHHHHHHHHHHHHHHhcC-CCcCCC-CCCEEEEEcCCHHHHHHHHHHHHHCCcEEEeeCC
Confidence 122222 222 2245778888899999999999986 776532 22345566664 6789999999999876531
Q ss_pred ------CCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 504 ------SNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 504 ------~~~lris~t~~~t~edId~li~aL~~ 529 (985)
.+.+|++++.++|++|+++++++|.+
T Consensus 356 ~~~~~~~~~iRis~~~~~~~e~i~~~~~~l~~ 387 (398)
T 3a2b_A 356 PAVPAEESLIRFSLMATHTYDQIDEAIEKMVK 387 (398)
T ss_dssp TTSCGGGCEEEEECCTTCCHHHHHHHHHHHHH
T ss_pred CCCCCCCceEEEEEeCCCCHHHHHHHHHHHHH
Confidence 36899999999999999999999974
|
| >3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class, PLP-dependent transferase-like, bacillus A csgid, porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus anthracis} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.73 E-value=8.9e-17 Score=186.96 Aligned_cols=290 Identities=16% Similarity=0.167 Sum_probs=179.4
Q ss_pred HHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEE-cCCCCcccHHHHHHCCc----------
Q 001989 634 FNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCII-PVSAHGTNPATAAMCGM---------- 702 (985)
Q Consensus 634 ~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv-~~~~Hg~~~~~a~~~G~---------- 702 (985)
..++++.++++++-....++.+||+++++.++++++.+ .++++||+ ...+|+.........|.
T Consensus 97 ~~~l~~~la~~~~~~~~v~~~~sGsea~~~ai~~a~~~------~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~ 170 (434)
T 3l44_A 97 EVKFAKMLKEAMPALDKVRFVNSGTEAVMTTIRVARAY------TGRTKIMKFAGCYHGHSDLVLVAAGSGPSTLGTPDS 170 (434)
T ss_dssp HHHHHHHHHHHCTTCSEEEEESSHHHHHHHHHHHHHHH------HCCCEEEEETTCCCCSSGGGGBC-------CCCBSS
T ss_pred HHHHHHHHHHhCCCCCEEEEeCchHHHHHHHHHHHHHh------hCCCEEEEEcCccCCCcHHHHhhcCCcccccCCCCc
Confidence 45778889998862233567789999998888777654 24567777 45677755433222221
Q ss_pred ---------EEEEEcCCCCCCCCHHHHHHHHHhcCCCEEEEEEEcCC-CccccccC----HHHHHHHHHHcCCEEEEEcc
Q 001989 703 ---------KIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPS-THGVYEEG----IDEICKIIHDNGGQVYMDGA 768 (985)
Q Consensus 703 ---------~vv~v~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~pn-~~G~i~~d----i~eI~~la~~~galliVD~a 768 (985)
++..+|.+ |+++|+++++++.+++++|+++.++ +.|.+. + +++|.++|+++|++||+|++
T Consensus 171 ~~~~~~~~~~~~~~~~~-----d~~~le~~l~~~~~~~~~vi~ep~~~~~G~~~-~~~~~l~~l~~l~~~~~illI~DEv 244 (434)
T 3l44_A 171 AGVPQSIAQEVITVPFN-----NVETLKEALDKWGHEVAAILVEPIVGNFGIVE-PKPGFLEKVNELVHEAGALVIYDEV 244 (434)
T ss_dssp TTCCHHHHTTEEEECTT-----CHHHHHHHHHHHGGGEEEEEECSSBCTTSCBC-CCTTHHHHHHHHHHTTTCEEEEECT
T ss_pred CCCCCcCCCceEecCcc-----cHHHHHHHHHhCCCCEEEEEEcCCCCCCCCcc-CCHHHHHHHHHHHHHcCCEEEEecc
Confidence 33444442 8999999997554577777776554 567775 5 99999999999999999998
Q ss_pred ccccccCCCCCCc--------cCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCC
Q 001989 769 NMNAQVGLTSPGY--------IGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLG 840 (985)
Q Consensus 769 ~~~~~~~l~~pg~--------~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~ 840 (985)
|. ++ +.+. ..+|++++ .|+|+ +|.++|++++++++.+.+.... . .
T Consensus 245 ~~----g~-~~g~~~~~~~~~~~~di~t~--sK~~~-----~G~~iG~~~~~~~i~~~~~~~~-----------~--~-- 297 (434)
T 3l44_A 245 IT----AF-RFMYGGAQDLLGVTPDLTAL--GKVIG-----GGLPIGAYGGKKEIMEQVAPLG-----------P--A-- 297 (434)
T ss_dssp TT----TT-TSSSSCHHHHHTCCCSEEEE--EGGGG-----TTSSCEEEEECHHHHTTBTTTS-----------S--B--
T ss_pred cc----ce-eccccHHHHHcCCCCCeeeh--hhhhc-----CCcCeeeEEEcHHHHHhhccCC-----------C--c--
Confidence 73 22 2222 23687765 48874 4678999998888766553210 0 0
Q ss_pred CCCCcchhhhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhcc---CCee--ecCCCCceeeEEEEEecCc--c
Q 001989 841 TIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKH---YPIL--FRGVNGTVAHEFIVDLRGL--K 913 (985)
Q Consensus 841 ~i~s~~~g~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~g---~~l~--~~~~~~~~~~~~iv~~~~~--~ 913 (985)
...+++.+++.+++++.+.+..+..+. ..++..++.++++++|++. +.+. ..+ .+. + +.+.+... .
T Consensus 298 ~~~~t~~~~~~a~aaa~aal~~~~~~~---~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~-~g~-~--~~~~~~~~~~~ 370 (434)
T 3l44_A 298 YQAGTMAGNPASMASGIACLEVLQQEG---LYEKLDELGATLEKGILEQAAKHNIDITLNR-LKG-A--LTVYFTTNTIE 370 (434)
T ss_dssp CCCCTTTTCHHHHHHHHHHHHHHTSTT---HHHHHHHHHHHHHHHHHHHHHHTTCCEEEEE-ETT-E--EEEEESSSCCC
T ss_pred ccCCCCCcCHHHHHHHHHHHHHHHccc---HHHHHHHHHHHHHHHHHHHHHhCCCCEEEEe-ecc-E--EEEEEecCccc
Confidence 000112224455555666666654433 3445667777888777652 2221 111 111 1 23333210 0
Q ss_pred c------cCCCCHHHHHHHHHHCCCccCCCCCCCCCEEEEeccCCCCHHHHHHHHccCChhHHHHhhcc
Q 001989 914 N------TAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRLKM 976 (985)
Q Consensus 914 ~------~~g~~~~~v~~~L~~~Gi~~~~~~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~~~ 976 (985)
+ ..+....++.+.|.++|+.+.... .+.+|++ ..+|++|||+ +++.|++++++++.
T Consensus 371 ~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~---~~~~rl~--~~~t~e~i~~--~l~~l~~~l~~~~~ 432 (434)
T 3l44_A 371 DYDAAQDTDGEMFGKFFKLMLQEGVNLAPSK---YEAWFLT--TEHTKEDIEY--TIEAVGRAFAALAD 432 (434)
T ss_dssp SHHHHHHSCHHHHHHHHHHHHHTTEECCSST---TCCEECC--TTCCHHHHHH--HHHHHHHHHHHHHH
T ss_pred chhhccccCHHHHHHHHHHHHHCCeEEeecC---CCcEEEe--cccCHHHHHH--HHHHHHHHHHHHHh
Confidence 0 000123678899999999886543 2467774 5789999999 88999999987754
|
| >2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.73 E-value=5.9e-16 Score=175.81 Aligned_cols=270 Identities=13% Similarity=0.110 Sum_probs=185.3
Q ss_pred HHHHHHHHhcC------CCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEe--
Q 001989 215 NFQTMIADLTG------LPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVS-- 286 (985)
Q Consensus 215 e~q~~ia~L~g------~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v-- 286 (985)
++++.+|++++ .++.++.+++|+|.++++++.++ . ++||+|++++..|+++...++. .|.+++.+
T Consensus 70 ~l~~~la~~~~~~~g~~~~~~~v~~~~g~~~a~~~~~~~~-~--~~gd~vl~~~p~~~~~~~~~~~----~g~~~~~v~~ 142 (370)
T 2z61_A 70 ELREKISELYKDKYKADIIPDNIIITGGSSLGLFFALSSI-I--DDGDEVLIQNPCYPCYKNFIRF----LGAKPVFCDF 142 (370)
T ss_dssp HHHHHHHHHHHHHSSCCCCGGGEEEESSHHHHHHHHHHHH-C--CTTCEEEEESSCCTHHHHHHHH----TTCEEEEECS
T ss_pred HHHHHHHHHHHHHhCCCCChhhEEECCChHHHHHHHHHHh-c--CCCCEEEEeCCCchhHHHHHHH----cCCEEEEeCC
Confidence 35566666664 56678999999998888777654 2 3789999999999999888753 57787776
Q ss_pred Cchhhhc-cCCCEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCC----CCC----CcccceEEEecC
Q 001989 287 DLKDIDY-KSGDVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTIL----KPP----GELGADIVVGSA 356 (985)
Q Consensus 287 ~~~~l~~-l~~~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l----~~~----~~~GaDi~v~s~ 356 (985)
|+++|++ +++++++|++.+| |++|.+.|++ |.++|+++|+++++| +..+.+.. .+. +..+.|++++|.
T Consensus 143 d~~~l~~~l~~~~~~v~~~~p~nptG~~~~~~-l~~~~~~~~~~li~D-e~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~ 220 (370)
T 2z61_A 143 TVESLEEALSDKTKAIIINSPSNPLGEVIDRE-IYEFAYENIPYIISD-EIYNGLVYEGKCYSAIEFDENLEKTILINGF 220 (370)
T ss_dssp SHHHHHHHCCSSEEEEEEESSCTTTCCCCCHH-HHHHHHHHCSEEEEE-CTTTTCBSSSCCCCGGGTCTTCSSEEEEEES
T ss_pred CHHHHHHhcccCceEEEEcCCCCCcCcccCHH-HHHHHHHcCCEEEEE-cchhhcccCCCCcCHHHccCCCCcEEEEecC
Confidence 4577877 8888999999988 6799999999 999999999999995 33333222 111 234789999998
Q ss_pred -ccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHH
Q 001989 357 -QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYA 435 (985)
Q Consensus 357 -k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l 435 (985)
|.|+.| |-.+|++++++++.+.+.....+ ...+.|. ....+..++ +
T Consensus 221 sK~~~~~----G~r~G~~~~~~~~~~~~~~~~~~------------------------~~~~~~~---~~~~a~~~~--l 267 (370)
T 2z61_A 221 SKLYAMT----GWRIGYVISNDEIIEAILKLQQN------------------------LFISAPT---ISQYAALKA--F 267 (370)
T ss_dssp TTTTTCG----GGCCEEEECCHHHHHHHHHHHHH------------------------HTSSSCH---HHHHHHGGG--G
T ss_pred hhccCCc----cceEEEEEECHHHHHHHHHHHhh------------------------cccCCCH---HHHHHHHHH--H
Confidence 776422 12379999998877655110000 0011111 111111111 1
Q ss_pred HHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCCCcceEEEecC-CHHHHHHHHH-HcCceeeee------cCCeE
Q 001989 436 VYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDTVKVKCA-DAHAIASAAY-KIEMNLRVV------DSNTV 507 (985)
Q Consensus 436 ~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~~~~~~~~~~~-~~~~v~~~L~-~~GI~~~~~------~~~~l 507 (985)
..++.+.++++.++..++.+++.+.|+++| +++..+....-+.+..+ +..++.+.|. ++||.+... ..+.+
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~~ 346 (370)
T 2z61_A 268 EKETEREINSMIKEFDRRRRLVLKYVKDFG-WEVNNPIGAYYVFPNIGEDGREFAYKLLKEKFVALTPGIGFGSKGKNYI 346 (370)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CBCCCCCBTTEECCBCSSCHHHHHHHHHHHHCEECEEGGGGCGGGSSBE
T ss_pred hccCHHHHHHHHHHHHHHHHHHHHHHHHcC-CeecCCCcceEEEEecCCCHHHHHHHHHHhCCEEEeCchhhCCCCCCEE
Confidence 211355678888899999999999999886 77653211111223555 4788999997 789987542 14789
Q ss_pred EEEeccCCCHHHHHHHHHHHhC
Q 001989 508 TASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 508 ris~t~~~t~edId~li~aL~~ 529 (985)
|++++ +++++|+++++.|.+
T Consensus 347 Ri~~~--~~~~~i~~~~~~l~~ 366 (370)
T 2z61_A 347 RISYA--NSYENIKEGLERIKE 366 (370)
T ss_dssp EEECC--SCHHHHHHHHHHHHH
T ss_pred EEEEe--CCHHHHHHHHHHHHH
Confidence 99999 699999999998863
|
| >3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.73 E-value=3.7e-16 Score=177.13 Aligned_cols=266 Identities=13% Similarity=0.124 Sum_probs=186.7
Q ss_pred HHHHHHHHHhcCC-CCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc----
Q 001989 214 LNFQTMIADLTGL-PMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL---- 288 (985)
Q Consensus 214 ~e~q~~ia~L~g~-~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~---- 288 (985)
.++++.+|+++|. +..++.+++|+|.+++.++.++ . ++||+|+++...|+.+...++ ..|.+++.++.
T Consensus 70 ~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~-~--~~gd~Vl~~~~~~~~~~~~~~----~~g~~~~~v~~~~~~ 142 (367)
T 3euc_A 70 EALRAKLKEVMQVPAGMEVLLGNGSDEIISMLALAA-A--RPGAKVMAPVPGFVMYAMSAQ----FAGLEFVGVPLRADF 142 (367)
T ss_dssp HHHHHHHHHHHTCCTTCEEEEEEHHHHHHHHHHHHT-C--CTTCEEEEEESCSCCSCHHHH----TTTCEEEEEECCTTS
T ss_pred HHHHHHHHHHhCCCCcceEEEcCCHHHHHHHHHHHH-c--CCCCEEEEcCCCHHHHHHHHH----HcCCeEEEecCCCCC
Confidence 4678899999999 6678999999998887766654 2 388999999999998887764 46888887754
Q ss_pred ----hhhhc-cCC-CEeEEEEEcC-CCCeee---ccHHHHHHHHHhC--CcEEEEEecCcc-cc---CCCCCCcccceEE
Q 001989 289 ----KDIDY-KSG-DVCGVLVQYP-GTEGEV---LDYGDFIKNAHAN--GVKVVMATDLLA-LT---ILKPPGELGADIV 352 (985)
Q Consensus 289 ----~~l~~-l~~-~t~~V~v~~p-n~~G~v---~di~~I~~~a~~~--galliV~a~~~~-lg---~l~~~~~~GaDi~ 352 (985)
++|++ +++ ++++|++++| |.+|.+ +++++|+++|+++ |+++++|. ..+ ++ .......++.+++
T Consensus 143 ~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~~~li~De-~~~~~~~~~~~~~~~~~~~~i~ 221 (367)
T 3euc_A 143 TLDRGAMLAAMAEHQPAIVYLAYPNNPTGNLFDAADMEAIVRAAQGSVCRSLVVVDE-AYQPFAQESWMSRLTDFGNLLV 221 (367)
T ss_dssp CCCHHHHHHHHHHHCCSEEEEESSCTTTCCCCCHHHHHHHHHHTBTTSCBCEEEEEC-TTCCSSSCCSGGGGGTCTTEEE
T ss_pred CCCHHHHHHHhhccCCCEEEEcCCCCCCCCCCCHHHHHHHHHhhhhcCCCcEEEEeC-cchhhcccchHHHHhhCCCEEE
Confidence 34555 665 8999999988 679998 4688999999999 99999953 322 11 1111234567788
Q ss_pred EecC-ccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHH
Q 001989 353 VGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMA 431 (985)
Q Consensus 353 v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~a 431 (985)
++|. |. +. +|..+|++.+++++.+.+... . + ..+.| .....+..+
T Consensus 222 ~~s~sK~-~~----~G~r~G~~~~~~~~~~~~~~~----------~---------------~-~~~~~---~~~~~a~~~ 267 (367)
T 3euc_A 222 MRTVSKL-GL----AGIRLGYVAGDPQWLEQLDKV----------R---------------P-PYNVN---VLTEATALF 267 (367)
T ss_dssp EEECCCT-TS----CSCCEEEEEECHHHHHHHGGG----------C---------------C-SSCCC---HHHHHHHHH
T ss_pred Eecchhh-cc----cccCceeeeeCHHHHHHHHHh----------C---------------C-CCCCC---HHHHHHHHH
Confidence 8887 65 42 345679999988877655110 0 0 00111 111212212
Q ss_pred HHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCCCcceEEEecCCHHHHHHHHHHcCceeeee------cCC
Q 001989 432 AMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDTVKVKCADAHAIASAAYKIEMNLRVV------DSN 505 (985)
Q Consensus 432 a~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~~~L~~~GI~~~~~------~~~ 505 (985)
+ +. ..+.++++.++..++.+++.+.|+++.++++... ...-+.+.+++..++.+.|.++||.++.. ..+
T Consensus 268 ~--l~--~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~-~~~~~~~~~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~ 342 (367)
T 3euc_A 268 A--LE--HVAVLDEQAAQLRAERSRVAEGMAAHGGVTVFPS-AANFLLARVPDAAQTFDRLLARKVLIKNVSKMHPLLAN 342 (367)
T ss_dssp H--HT--THHHHHHHHHHHHHHHHHHHHHHHTSTTCEECCC-SSSEEEEECSCHHHHHHHHHTTTEECEECGGGCGGGTT
T ss_pred H--hc--CHHHHHHHHHHHHHHHHHHHHHHHhCCCcEECCC-CCeEEEEECCCHHHHHHHHHHCCeEEEECCccCCCCCC
Confidence 1 12 2456788999999999999999999833886532 12223455556788999999999988643 247
Q ss_pred eEEEEeccCCCHHHHHHHHHHHhC
Q 001989 506 TVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 506 ~lris~t~~~t~edId~li~aL~~ 529 (985)
.+|++++ |++|+|+++++|.+
T Consensus 343 ~iRis~~---~~~~i~~~~~~l~~ 363 (367)
T 3euc_A 343 CLRVTVS---TPEENAQFLEAFAA 363 (367)
T ss_dssp EEEEECC---CHHHHHHHHHHHHH
T ss_pred EEEEecC---CHHHHHHHHHHHHH
Confidence 8999976 99999999999974
|
| >1n8p_A Cystathionine gamma-lyase; three open alpha/beta structures; HET: PLP; 2.60A {Saccharomyces cerevisiae} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.72 E-value=3.3e-16 Score=180.06 Aligned_cols=270 Identities=15% Similarity=0.113 Sum_probs=181.3
Q ss_pred HHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc--h
Q 001989 212 SLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL--K 289 (985)
Q Consensus 212 ~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~--~ 289 (985)
.+.++++.+|+++|.+ ...++.+||.+++.++. + . ++||+||++...|+++...+...++..|++++.+|. +
T Consensus 56 ~~~~lr~~la~~~g~~--~~i~~~sGt~a~~~al~-~-~--~~gd~Vi~~~~~y~~~~~~~~~~~~~~G~~v~~v~~~d~ 129 (393)
T 1n8p_A 56 NRENLERAVAALENAQ--YGLAFSSGSATTATILQ-S-L--PQGSHAVSIGDVYGGTHRYFTKVANAHGVETSFTNDLLN 129 (393)
T ss_dssp HHHHHHHHHHHHTTCS--EEEEESCHHHHHHHHHH-T-S--CSSCEEEEESSCCHHHHHHHHHTSTTTCSCCEEESSHHH
T ss_pred hHHHHHHHHHHHhCCC--cEEEECChHHHHHHHHH-H-c--CCCCEEEEeCCCchHHHHHHHHHHHHcCcEEEEeCCChH
Confidence 4667889999999987 36677777766665554 2 2 378999999999998888776556778999999987 4
Q ss_pred hhhc-cCCCEeEEEEEcC-CCCeeeccHHHHHHHHHhC----CcEEEEEecCccccCCCCCCcccceEEEecC-cccccc
Q 001989 290 DIDY-KSGDVCGVLVQYP-GTEGEVLDYGDFIKNAHAN----GVKVVMATDLLALTILKPPGELGADIVVGSA-QRFGVP 362 (985)
Q Consensus 290 ~l~~-l~~~t~~V~v~~p-n~~G~v~di~~I~~~a~~~----galliV~a~~~~lg~l~~~~~~GaDi~v~s~-k~lg~P 362 (985)
++++ ++++|++|++.+| |.+|.+.|+++|+++||++ |+++++| +.++.+....+.++|+|+++.|+ |.++
T Consensus 130 ~l~~~i~~~t~lv~~~~~~nptG~~~~l~~i~~la~~~~~~~~~~livD-~a~~~~~~~~~~~~~~di~~~S~sK~~g-- 206 (393)
T 1n8p_A 130 DLPQLIKENTKLVWIETPTNPTLKVTDIQKVADLIKKHAAGQDVILVVD-NTFLSPYISNPLNFGADIVVHSATKYIN-- 206 (393)
T ss_dssp HHHHHSCSSEEEEEECSSCTTTCCCCCHHHHHHHHHHHTTTTTCEEEEE-CTTTHHHHCCGGGGTCSEEEEETTTTTT--
T ss_pred HHHHhcccCceEEEEECCCCCcceecCHHHHHHHHHHhCCCCCCEEEEe-CCccccccCCHHHcCCeEEEEECccccc--
Confidence 5666 7889999999988 7899999999999999999 9999995 34554444456678999999998 6553
Q ss_pred CCCCCCc--E-EEEEEc-hhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHHHHh
Q 001989 363 MGYGGPH--A-AFLATS-QEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYH 438 (985)
Q Consensus 363 ~~~GGP~--~-G~l~~~-~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~ 438 (985)
||| . |+++++ +++++.+.. .++..|+.. ++...++...+
T Consensus 207 ----~~G~rigG~~~~~~~~~~~~l~~-------------------------~~~~~g~~~--~~~~~~~~~~~------ 249 (393)
T 1n8p_A 207 ----GHSDVVLGVLATNNKPLYERLQF-------------------------LQNAIGAIP--SPFDAWLTHRG------ 249 (393)
T ss_dssp ----CSSCCCCEEEEESCHHHHHHHHH-------------------------HHHHHCCCC--CHHHHHHHHHH------
T ss_pred ----CCCCceeEEEEeCCHHHHHHHHH-------------------------HHHhcCCCC--CHHHHHHHHhc------
Confidence 344 3 888885 666655410 001111110 01111111111
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHhcCCC-eE-E-cCC----C------------C-cceEEEecCC----HHHHHHHHHH
Q 001989 439 GPEGLKTIAQRVHGLAGTFALGLKKLGT-VE-V-QGL----P------------F-FDTVKVKCAD----AHAIASAAYK 494 (985)
Q Consensus 439 g~~Gl~~i~~~~~~~a~~l~~~L~~~g~-~~-~-~~~----~------------~-~~~~~~~~~~----~~~v~~~L~~ 494 (985)
.+.+....++..+++.++++.|++.+. +. + ... + . ...+.|.+++ +..+.+.|..
T Consensus 250 -l~~~~~~~~~~~~~~~~l~~~L~~~~~~l~~v~~p~l~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~l~~l~~ 328 (393)
T 1n8p_A 250 -LKTLHLRVRQAALSANKIAEFLAADKENVVAVNYPGLKTHPNYDVVLKQHRDALGGGMISFRIKGGAEAASKFASSTRL 328 (393)
T ss_dssp -HTTHHHHHHHHHHHHHHHHHHHTSCTTTEEEEECTTSTTSTTHHHHHHHSGGGCCCSEEEEEESSCHHHHHHHHHHCSS
T ss_pred -cchHHHHHHHHHHHHHHHHHHHHhCCCCceEEECCCCCCCccHHHHHhhCCCCCCccEEEEEeCCcHHHHHHHHhhCCc
Confidence 123555666777888889999988753 33 2 110 1 2 3456677764 3334444432
Q ss_pred cCceee--------e-------------------ecCCeEEEEeccCCCHHHHHHHHHHHh
Q 001989 495 IEMNLR--------V-------------------VDSNTVTASFDETTTLEDVDKLFIVFA 528 (985)
Q Consensus 495 ~GI~~~--------~-------------------~~~~~lris~t~~~t~edId~li~aL~ 528 (985)
.++.++ . +.++.+|+|++..+++++|+.+.++|.
T Consensus 329 ~~~~~s~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~iRlS~g~~~~~~~i~~l~~al~ 389 (393)
T 1n8p_A 329 FTLAESLGGIESLLEVPAVMTHGGIPKEAREASGVFDDLVRISVGIEDTDDLLEDIKQALK 389 (393)
T ss_dssp SEECSCCCCSSCEEECTTTTTSCSSCTTTTTTTSCCTTEEEEECCSSCHHHHHHHHHHHHH
T ss_pred ceECCCCCCCcceeeccccccccccCHHHHHhcCCCCCeEEEEEccCCHHHHHHHHHHHHH
Confidence 232211 0 014789999999999999999999986
|
| >1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.72 E-value=1.4e-15 Score=173.65 Aligned_cols=325 Identities=13% Similarity=0.113 Sum_probs=202.5
Q ss_pred HHHHHHHHhcCCCccceecCCCCCCCCCcHHHHHHHHhC--CccccccCCChhhHhhhHHHHHHHHHHHHHHhcCC--CC
Q 001989 153 MIEHMQKLASMNKVYKSFIGMGYYNTHVPPVILRNIMEN--PAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGL--PM 228 (985)
Q Consensus 153 ~~~~~~~l~~~n~~~~~~lG~g~y~~~~p~~v~~~i~~~--~~~~t~~~pyq~e~sqg~l~~i~e~q~~ia~L~g~--~~ 228 (985)
+.+..+++...+..+.+| +.|..+...|+.+.+++.+. .. ...|++. +|..+...++.+.+.+..|. ++
T Consensus 18 ~~~~~~~~~~~g~~~i~l-~~~~~~~~~~~~v~~a~~~~~~~~-~~~y~~~-----~g~~~l~~~la~~~~~~~g~~~~~ 90 (388)
T 1j32_A 18 IDAKAKAMKAEGIDVCSF-SAGEPDFNTPKHIVEAAKAALEQG-KTRYGPA-----AGEPRLREAIAQKLQRDNGLCYGA 90 (388)
T ss_dssp THHHHHHHHTTTCCCEEC-CCSSCSSCCCHHHHHHHHHHHHTT-CCSCCCT-----TCCHHHHHHHHHHHHHHHCCCCCG
T ss_pred HHHHHHHHHhcCCCEEEC-CCCCCCCCCCHHHHHHHHHHHhcC-CCCCCCC-----CCCHHHHHHHHHHHHHhcCCCCCh
Confidence 344444444444333332 44444444566654443321 11 2334432 22222222333344444464 55
Q ss_pred cceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc----------hhhhc-cCCC
Q 001989 229 SNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL----------KDIDY-KSGD 297 (985)
Q Consensus 229 ~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~----------~~l~~-l~~~ 297 (985)
.++.+++|+|.+++.++.++ . ++||+|++++..|+++...++. .|++++.++. ++|++ ++++
T Consensus 91 ~~v~~~~g~~~a~~~~~~~~-~--~~gd~vl~~~~~~~~~~~~~~~----~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~ 163 (388)
T 1j32_A 91 DNILVTNGGKQSIFNLMLAM-I--EPGDEVIIPAPFWVSYPEMVKL----AEGTPVILPTTVETQFKVSPEQIRQAITPK 163 (388)
T ss_dssp GGEEEESHHHHHHHHHHHHH-C--CTTCEEEEESSCCTHHHHHHHH----TTCEEEEECCCGGGTTCCCHHHHHHHCCTT
T ss_pred hhEEEcCCHHHHHHHHHHHh-c--CCCCEEEEcCCCChhHHHHHHH----cCCEEEEecCCcccCCCCCHHHHHHhcCcC
Confidence 68889999998888777655 2 3789999999999998887653 5778877754 24555 7788
Q ss_pred EeEEEEEcC-CCCeee---ccHHHHHHHHHhCCcEEEEEecCccccCCC-----CCC-----cccceEEEecC-cccccc
Q 001989 298 VCGVLVQYP-GTEGEV---LDYGDFIKNAHANGVKVVMATDLLALTILK-----PPG-----ELGADIVVGSA-QRFGVP 362 (985)
Q Consensus 298 t~~V~v~~p-n~~G~v---~di~~I~~~a~~~galliV~a~~~~lg~l~-----~~~-----~~GaDi~v~s~-k~lg~P 362 (985)
+++|++++| |++|.+ +++++|+++||++|+++++|. .++..... +.. .++.|++++|. |.|+.|
T Consensus 164 ~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~sK~~~~~ 242 (388)
T 1j32_A 164 TKLLVFNTPSNPTGMVYTPDEVRAIAQVAVEAGLWVLSDE-IYEKILYDDAQHLSIGAASPEAYERSVVCSGFAKTYAMT 242 (388)
T ss_dssp EEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEC-TTTTCBCTTCCCCCGGGSCHHHHHTEEEEEESTTTTTCT
T ss_pred ceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEc-cchhcccCCCCCCCHHHccccccCCEEEEeechhccCCc
Confidence 999999998 679998 469999999999999999953 33322111 111 15789999998 766422
Q ss_pred CCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHH-HHHHhCcc
Q 001989 363 MGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAM-YAVYHGPE 441 (985)
Q Consensus 363 ~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~-~l~~~g~~ 441 (985)
|..+|++++++++.+.+... +...+.+. + .+ +..++. .+. .+.+
T Consensus 243 ----G~r~G~~~~~~~~~~~l~~~--------------------------~~~~~~~~--~-~~-~~~a~~~~l~-~~~~ 287 (388)
T 1j32_A 243 ----GWRVGFLAGPVPLVKAATKI--------------------------QGHSTSNV--C-TF-AQYGAIAAYE-NSQD 287 (388)
T ss_dssp ----TTCCEEEECCHHHHHHHHHH--------------------------HHTTTCSC--C-HH-HHHHHHHHHH-SCSH
T ss_pred ----ccceEEEEeCHHHHHHHHHH--------------------------HhhcccCC--C-HH-HHHHHHHHHh-CCcH
Confidence 22379999988876654110 00111111 1 12 112221 122 3456
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCCCcceEEEecC----CHHHHHHHHHH-cCceeeee----cCCeEEEEec
Q 001989 442 GLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDTVKVKCA----DAHAIASAAYK-IEMNLRVV----DSNTVTASFD 512 (985)
Q Consensus 442 Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~~~~~~~~~~~----~~~~v~~~L~~-~GI~~~~~----~~~~lris~t 512 (985)
.++++.++..++.+++.+.|+++.++++..+....-+.+..+ +..++.+.|.+ +||.+... .++.+|++++
T Consensus 288 ~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~ 367 (388)
T 1j32_A 288 CVQEMLAAFAERRRYMLDALNAMPGLECPKPDGAFYMFPSIAKTGRSSLDFCSELLDQHQVATVPGAAFGADDCIRLSYA 367 (388)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCTTCBCCCCCBTTEECCBCGGGTCCHHHHHHHHHHHHCEECEEGGGGTCTTBEEEECC
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCCcccCCCeeEEEEEecCCCCCCHHHHHHHHHHhCCEEEeChhhhCCCCcEEEEec
Confidence 688899999999999999999983377653221101122332 27889999986 69988642 1578999987
Q ss_pred cCCCHHHHHHHHHHHhC
Q 001989 513 ETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 513 ~~~t~edId~li~aL~~ 529 (985)
+++++|+++++.|.+
T Consensus 368 --~~~~~i~~~~~~l~~ 382 (388)
T 1j32_A 368 --TDLDTIKRGMERLEK 382 (388)
T ss_dssp --SCHHHHHHHHHHHHH
T ss_pred --CCHHHHHHHHHHHHH
Confidence 799999999998874
|
| >4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LLP; 1.80A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=99.72 E-value=5.4e-16 Score=181.64 Aligned_cols=296 Identities=15% Similarity=0.169 Sum_probs=181.0
Q ss_pred HHHHHHHHHHHHHhCCC--ccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEE-cCCCCcccHHHHHHCCc------
Q 001989 632 EMFNNLGEWLCTITGFD--SFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCII-PVSAHGTNPATAAMCGM------ 702 (985)
Q Consensus 632 ~~~~e~~~~la~l~G~~--~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv-~~~~Hg~~~~~a~~~G~------ 702 (985)
+...+++++++++++.+ ...++.+||++|+++++++++.+ .++++||+ ...+||.........+.
T Consensus 107 ~~~~~la~~l~~~~~~~~~~~v~~~~sGseA~~~alk~a~~~------~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~ 180 (453)
T 4ffc_A 107 EQYVQVAELLNALTPGDHDKRTALFNSGAEAVENAIKVARLA------TGRPAVVAFDNAYHGRTNLTMALTAKSMPYKS 180 (453)
T ss_dssp HHHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHHHHH------HCCCEEEEETTCCCCSSHHHHHHCCCCTTTTT
T ss_pred HHHHHHHHHHHHhCCCCCCcEEEEeCcHHHHHHHHHHHHHHh------cCCCEEEEEcCccCCcchHHHhhcCCCccccc
Confidence 34567889999998743 23567789999998888777654 14566776 56788877665443221
Q ss_pred -------EEEEEcCCC-----CCCCC-------HHHHHHHHHhcCCCEEEEEEEcCC-CccccccC----HHHHHHHHHH
Q 001989 703 -------KIVSVGTDA-----KGNIN-------IEELRKAAEANRDNLSTLMVTYPS-THGVYEEG----IDEICKIIHD 758 (985)
Q Consensus 703 -------~vv~v~~d~-----~g~iD-------~e~L~~~i~~~~~~t~~Vvv~~pn-~~G~i~~d----i~eI~~la~~ 758 (985)
.+..+|++. .|..+ +++|++.+. ++++++|+++..+ +.|++. + +++|.++|++
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~i~--~~~~aavi~ep~~~~gG~~~-~~~~~l~~l~~l~~~ 257 (453)
T 4ffc_A 181 QFGPFAPEVYRMPASYPLRDEPGLTGEEAARRAISRIETQIG--AQSLAAIIIEPIQGEGGFIV-PAPGFLATLTAWASE 257 (453)
T ss_dssp TSCSCCSSEEEECCCCTTTSCTTCCHHHHHHHHHHHHHHHTC--GGGEEEEEECSSBTTTTSBC-CCTTHHHHHHHHHHH
T ss_pred CCCCCCCCcEEeCCCccccCccccchHHHHHHHHHHHHHhcC--CCCEEEEEEcCCCCCCCccc-CCHHHHHHHHHHHHH
Confidence 455666531 12111 345555543 1345555554333 456664 3 9999999999
Q ss_pred cCCEEEEEccccccccCCCCCCc--------cCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCC
Q 001989 759 NGGQVYMDGANMNAQVGLTSPGY--------IGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGI 830 (985)
Q Consensus 759 ~galliVD~a~~~~~~~l~~pg~--------~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~ 830 (985)
+|+++|+|++|. + +.+.+. ..+|+++++ |+|+ +|.++|++++++++.+.+.....+
T Consensus 258 ~~~llI~DEv~~-g---~g~~g~~~a~~~~~~~pdi~t~s--K~~~-----~G~~~G~~~~~~~i~~~~~~~~~~----- 321 (453)
T 4ffc_A 258 NGVVFIADEVQT-G---FARTGAWFASEHEGIVPDIVTMA--KGIA-----GGMPLSAVTGRAELMDAVYAGGLG----- 321 (453)
T ss_dssp HTCEEEEECTTT-T---TTTTSSSSTHHHHTCCCSEEEEC--GGGG-----TTSSCEEEEEEHHHHTTSCTTSSC-----
T ss_pred cCCEEEEecCcc-C---CCcccccchhhhcCCCcchHhhh--hhhc-----CCcCeEEEEECHHHHhhhcccCcC-----
Confidence 999999999873 2 222222 236888764 8884 357889999888877655321100
Q ss_pred CCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc---cCCee--ecCCCCceeeEE
Q 001989 831 PAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK---HYPIL--FRGVNGTVAHEF 905 (985)
Q Consensus 831 ~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~---g~~l~--~~~~~~~~~~~~ 905 (985)
+. +.++++.++++.+.|..+..+++ .++..++.++++++|++ .+... ..+ .+.+ +
T Consensus 322 ---------~t----~~~~~~~~aaa~aal~~~~~~~~---~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~-~g~~---~ 381 (453)
T 4ffc_A 322 ---------GT----YGGNPVTCAAAVAALGVMRELDL---PARARAIEASVTSRLSALAEEVDIIGEVRG-RGAM---L 381 (453)
T ss_dssp ---------CS----SSSCHHHHHHHHHHHHHHHHTTH---HHHHHHHHHHHHHHHHHHHHHCSSEEEEEE-ETTE---E
T ss_pred ---------CC----CCcCHHHHHHHHHHHHHhhhhhH---HHHHHHHHHHHHHHHHHHHhhCCCeEEEEe-eceE---E
Confidence 11 12244555556666766544443 34555667777777764 22221 111 1222 2
Q ss_pred EEEecC--ccccCCCCHHHHHHHHHHCCCccCCCCCCCCCEEEEeccCCCCHHHHHHHHccCChhHHHHhhc
Q 001989 906 IVDLRG--LKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRLK 975 (985)
Q Consensus 906 iv~~~~--~~~~~g~~~~~v~~~L~~~Gi~~~~~~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~~ 975 (985)
.+.+.. .+........++.+.|.++|+.+..... ..+.+||+++..+|++||++ +++.|+++++++.
T Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~-~~~~iRi~~~~~~t~e~i~~--~l~~l~~~l~~~~ 450 (453)
T 4ffc_A 382 AIEIVKPGTLEPDAALTKSIAAEALSQGVLILTCGT-FGNVIRLLPPLVIGDDLLDE--GITALSDIIRAKA 450 (453)
T ss_dssp EEEEBCTTSCCBCHHHHHHHHHHHHHTTEECCEECT-TSCEEEECCCTTCCHHHHHH--HHHHHHHHHHHHC
T ss_pred EEEEecCcccCCCHHHHHHHHHHHHhCCCEEecCCC-CCCEEEEECCCCCCHHHHHH--HHHHHHHHHHHHH
Confidence 233310 0000012356788999999998754321 23799999999999999999 8899999988754
|
| >1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA synthase, biotin biosynthesis, 8-AMIN oxonanoate synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB: 2g6w_A* 1dje_A* 1dj9_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=3.5e-16 Score=178.51 Aligned_cols=273 Identities=12% Similarity=0.109 Sum_probs=187.1
Q ss_pred HHHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc--
Q 001989 211 ESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL-- 288 (985)
Q Consensus 211 ~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~-- 288 (985)
+...++++.+|+++|++ ...++.+||.+++.++.++ .++||+|+++...|+++...++ ..|.+++.++.
T Consensus 84 ~~~~~l~~~la~~~g~~--~~i~~~sGt~a~~~~~~~~---~~~gd~v~~~~~~~~~~~~~~~----~~g~~~~~~~~~d 154 (384)
T 1bs0_A 84 VVHQALEEELAEWLGYS--RALLFISGFAANQAVIAAM---MAKEDRIAADRLSHASLLEAAS----LSPSQLRRFAHND 154 (384)
T ss_dssp HHHHHHHHHHHHHHTCS--EEEEESCHHHHHHHHHHHH---CCTTCEEEEETTCCHHHHHHHH----TSSSEEEEECTTC
T ss_pred HHHHHHHHHHHHHhCCC--cEEEeCCcHHHHHHHHHHh---CCCCcEEEEcccccHHHHHHHH----HcCCCEEEeCCCC
Confidence 55677889999999986 3556677787776655543 2478999999999999988875 35888888764
Q ss_pred -hhhhc-cCC---CEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCC---C--CCc--ccceEEEec
Q 001989 289 -KDIDY-KSG---DVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILK---P--PGE--LGADIVVGS 355 (985)
Q Consensus 289 -~~l~~-l~~---~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~---~--~~~--~GaDi~v~s 355 (985)
++|++ +++ ++++|++.+| |.+|.+.|+++|.++|+++|+++++| +..+.+... . +.. .+.|++++|
T Consensus 155 ~~~l~~~l~~~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D-e~~~~~~~~~~~~~~~~~~~~~~di~~~s 233 (384)
T 1bs0_A 155 VTHLARLLASPCPGQQMVVTEGVFSMDGDSAPLAEIQQVTQQHNGWLMVD-DAHGTGVIGEQGRGSCWLQKVKPELLVVT 233 (384)
T ss_dssp HHHHHHHHHSCCSSCEEEEEESBCTTTCCBCCHHHHHHHHHHTTCEEEEE-CTTTTTTSSGGGCCHHHHTTCCCSEEEEE
T ss_pred HHHHHHHHHhcCCCCeEEEEeCCCCCCCCccCHHHHHHHHHHcCcEEEEE-CCcccceecCCCCchHHhcCCCCcEEEee
Confidence 45655 432 4788888877 78999999999999999999999995 344444321 1 112 358999999
Q ss_pred C-ccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHH
Q 001989 356 A-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMY 434 (985)
Q Consensus 356 ~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~ 434 (985)
. |.|+ | || |++++++++++.+... + ..| ..+.+. +.....+..+++
T Consensus 234 ~sK~~~-~-----~G-G~~~~~~~~~~~l~~~---------~-~~~--------------~~~~~~-~~~~~~~~~~al- 280 (384)
T 1bs0_A 234 FGKGFG-V-----SG-AAVLCSSTVADYLLQF---------A-RHL--------------IYSTSM-PPAQAQALRASL- 280 (384)
T ss_dssp SSSTTS-S-----CC-EEEEECHHHHHHHHHH---------C-HHH--------------HSSBCC-CHHHHHHHHHHH-
T ss_pred ccchhh-c-----cC-cEEEeCHHHHHHHHHh---------c-hhh--------------hcCCCC-CHHHHHHHHHHH-
Confidence 8 7765 2 33 8999998877654100 0 000 001111 111222222332
Q ss_pred HHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcC-CCCcceEEEecCC-HHHHHHHHHHcCceeeeec-------CC
Q 001989 435 AVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQG-LPFFDTVKVKCAD-AHAIASAAYKIEMNLRVVD-------SN 505 (985)
Q Consensus 435 l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~-~~~~~~~~~~~~~-~~~v~~~L~~~GI~~~~~~-------~~ 505 (985)
..+....++++.++..++.+++.+.|+++| +++.. ...+-.+.+.... ..++.+.|.++||.+.... .+
T Consensus 281 -~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~ 358 (384)
T 1bs0_A 281 -AVIRSDEGDARREKLAALITRFRAGVQDLP-FTLADSCSAIQPLIVGDNSRALQLAEKLRQQGCWVTAIRPPTVPAGTA 358 (384)
T ss_dssp -HHHHSHHHHHHHHHHHHHHHHHHHHHTTSS-CEECSCCSSBCCEEEESHHHHHHHHHHHHHTTEECCEECTTSSCTTCE
T ss_pred -HHHhccccHHHHHHHHHHHHHHHHHHHhcC-CcccCCCCCEEEEEeCCHHHHHHHHHHHHHCCcEEEeecCCCCCCCCc
Confidence 333221567888999999999999999997 88763 2222123332111 7789999999999876431 26
Q ss_pred eEEEEeccCCCHHHHHHHHHHHh
Q 001989 506 TVTASFDETTTLEDVDKLFIVFA 528 (985)
Q Consensus 506 ~lris~t~~~t~edId~li~aL~ 528 (985)
.+|++++..+|++|+++++++|.
T Consensus 359 ~~Ri~~~~~~~~~~i~~~~~~l~ 381 (384)
T 1bs0_A 359 RLRLTLTAAHEMQDIDRLLEVLH 381 (384)
T ss_dssp EECCBCCTTCCHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCHHHHHHHHHHHH
Confidence 79999999999999999999986
|
| >3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle structural genomics center for infectious disease; HET: LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A | Back alignment and structure |
|---|
Probab=99.72 E-value=2.3e-16 Score=184.61 Aligned_cols=298 Identities=15% Similarity=0.127 Sum_probs=180.8
Q ss_pred HHHHHHHHHHHHHhCCC--ccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEE-cCCCCcccHHHHHHCC-------
Q 001989 632 EMFNNLGEWLCTITGFD--SFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCII-PVSAHGTNPATAAMCG------- 701 (985)
Q Consensus 632 ~~~~e~~~~la~l~G~~--~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv-~~~~Hg~~~~~a~~~G------- 701 (985)
+...+++++++++++.+ ...++++||++|+++++++++.+ .++++||+ ...+||.........+
T Consensus 104 ~~~~~la~~l~~~~~~~~~~~v~~~~sGseA~~~Alk~a~~~------~g~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~ 177 (451)
T 3oks_A 104 EGYVAVCEQLNRLTPVRGDKRSALFNSGSEAVENAVKIARSH------THKPAVVAFDHAYHGRTNLTMALTAKVMPYKD 177 (451)
T ss_dssp HHHHHHHHHHHHHSSCCSSEEEEEESSHHHHHHHHHHHHHHH------HCCCEEEEETTCCCCSSHHHHHHCCCCTTTTT
T ss_pred HHHHHHHHHHHHhCCcCCCCEEEEeCcHHHHHHHHHHHHHHh------cCCCeEEEEcCCcCCccHHHHHhcCCCccccc
Confidence 34567889999998743 23567799999998888877754 14566776 6678887766544322
Q ss_pred ------cEEEEEcCCCC------C-------CCCHHHHHHHHHh--cCCCEEEEEEEcCC-CccccccC----HHHHHHH
Q 001989 702 ------MKIVSVGTDAK------G-------NINIEELRKAAEA--NRDNLSTLMVTYPS-THGVYEEG----IDEICKI 755 (985)
Q Consensus 702 ------~~vv~v~~d~~------g-------~iD~e~L~~~i~~--~~~~t~~Vvv~~pn-~~G~i~~d----i~eI~~l 755 (985)
..+..+|++.. | ..+++.+++.+++ ..+++++|+++..+ +.|++. + +++|.++
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~aavi~ep~~~~gG~~~-~~~~~l~~l~~l 256 (451)
T 3oks_A 178 GFGPFAPEIYRAPLSYPFRDAEFGKELATDGELAAKRAITVIDKQIGADNLAAVVIEPIQGEGGFIV-PADGFLPTLLDW 256 (451)
T ss_dssp TCCSCCSSEEEECCCCHHHHGGGCTTTTTCHHHHHHHHHHHHHHHTCGGGEEEEEECSSBTTTTCBC-CCTTHHHHHHHH
T ss_pred CCCCCCCCcEEeCCCccccccccccccchhhHHHHHHHHHHHHhhcCCCCEEEEEEcCCcCCCCccC-CCHHHHHHHHHH
Confidence 14566665411 0 1135555555543 12356666654433 456665 3 9999999
Q ss_pred HHHcCCEEEEEccccccccCCCCC---C--ccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCC
Q 001989 756 IHDNGGQVYMDGANMNAQVGLTSP---G--YIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGI 830 (985)
Q Consensus 756 a~~~galliVD~a~~~~~~~l~~p---g--~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~ 830 (985)
|+++|+++|+|++|. +++-.... . ...+|+++++ |+|+ +|.++|++++++++.+.+.....+
T Consensus 257 ~~~~g~~lI~DEv~~-g~g~~g~~~~~~~~~~~pdi~t~s--K~l~-----~G~~iG~v~~~~~~~~~~~~~~~~----- 323 (451)
T 3oks_A 257 CRKNDVVFIADEVQT-GFARTGAMFACEHEGIDPDLIVTA--KGIA-----GGLPLSAVTGRAEIMDSPHVSGLG----- 323 (451)
T ss_dssp HHHTTCEEEEECTTT-TTTTTSSSSGGGGGTCCCSEEEEC--GGGG-----TTSSCEEEEEEHHHHTCSCTTSBC-----
T ss_pred HHHcCCEEEEEeccc-CCCccccchhhhhcCCCCCeeeeh--hhhh-----CCcceEEEEECHHHHhhhcCCCcC-----
Confidence 999999999999884 22211111 1 1236888664 8885 357889999888877655321110
Q ss_pred CCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhcc---CCee--ecCCCCceeeEE
Q 001989 831 PAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKH---YPIL--FRGVNGTVAHEF 905 (985)
Q Consensus 831 ~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~g---~~l~--~~~~~~~~~~~~ 905 (985)
+. +.++++.++++.+.+..+..+++ .++..++.++++++|++. +... ..+ .+.+ +
T Consensus 324 ---------~t----~~~~~~~~aaa~aal~~~~~~~~---~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~-~G~~---~ 383 (451)
T 3oks_A 324 ---------GT----YGGNPIACAAALATIETIESEGL---VARAQQIEKIMKDRLGRLQAEDDRIGDVRG-RGAM---I 383 (451)
T ss_dssp ---------CS----SSSCHHHHHHHHHHHHHHHHTTH---HHHHHHHHHHHHHHHHHHHHHCTTEEEEEE-ETTE---E
T ss_pred ---------CC----CCCCHHHHHHHHHHHHHHhhhhH---HHHHHHHHHHHHHHHHHHHhhCCCeEEEEE-eeEE---E
Confidence 11 12244555556666766544433 345566677777777641 2221 111 1222 2
Q ss_pred EEEecC--ccccCCCCHHHHHHHHHHCCCccCCCCCCCCCEEEEeccCCCCHHHHHHHHccCChhHHHH
Q 001989 906 IVDLRG--LKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKSWTGIVMLSSPSEKKLH 972 (985)
Q Consensus 906 iv~~~~--~~~~~g~~~~~v~~~L~~~Gi~~~~~~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~ 972 (985)
.+.+.. .+...+....++.+.|.++|+.+.... +..+.+||+++..+|++||++ +++.|+++++
T Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~-~~~~~iRi~~~~~~t~e~i~~--~l~~l~~~l~ 449 (451)
T 3oks_A 384 AMELVKAGTTEPDADLTKALCAGAHAAGVIVLSCG-TYGNVVRFLPPLSIGDDLLNE--GLDVLEEVLR 449 (451)
T ss_dssp EEEEBSTTSCCBCHHHHHHHHHHHHHTTEECEEEC-TTSCEEEECCCTTCCHHHHHH--HHHHHHHHHH
T ss_pred EEEEecCccCCCCHHHHHHHHHHHHhCCcEEecCC-CCCCEEEEECCCCCCHHHHHH--HHHHHHHHHh
Confidence 233310 000011235678999999999875432 123799999999999999999 7788888775
|
| >3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance, microev0lution, integrated approach, chlorophyll biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus pcc 6301} SCOP: c.67.1.4 PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A* 3usf_A* 2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=1.8e-16 Score=183.88 Aligned_cols=291 Identities=12% Similarity=0.092 Sum_probs=179.7
Q ss_pred HHHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEE-cCCCCcccHHHHHH------------
Q 001989 633 MFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCII-PVSAHGTNPATAAM------------ 699 (985)
Q Consensus 633 ~~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv-~~~~Hg~~~~~a~~------------ 699 (985)
...+++++++++++-....++.++|++++++++++++.+. ++++||+ ...+||........
T Consensus 93 ~~~~la~~l~~~~~~~~~v~~~~ggsea~~~al~~a~~~~------~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~ 166 (427)
T 3fq8_A 93 LENVLAEMVNDAVPSIEMVRFVNSGTEACMAVLRIMRAYT------GRDKIIKFEGCYHGHADMFLVKAGSGVATLGLPS 166 (427)
T ss_dssp HHHHHHHHHHHHSTTCSEEEEESSHHHHHHHHHHHHHHHH------CCCEEEEEETCCCCSCGGGCSSCCTHHHHHTCCS
T ss_pred HHHHHHHHHHHhCCCCCEEEEeCCHHHHHHHHHHHHHHhh------CCCEEEEECCCcCCCCHHHHHhcCCcccccCCCC
Confidence 3557888999998622335677899999988877666542 3456666 56778755332111
Q ss_pred -CCc------EEEEEcCCCCCCCCHHHHHHHHHhcCCCEEEEEEEcCC-CccccccC----HHHHHHHHHHcCCEEEEEc
Q 001989 700 -CGM------KIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPS-THGVYEEG----IDEICKIIHDNGGQVYMDG 767 (985)
Q Consensus 700 -~G~------~vv~v~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~pn-~~G~i~~d----i~eI~~la~~~galliVD~ 767 (985)
.|+ ++..+|.+ |+++|+++++++++++++|+++.++ ..|.+. + +++|.++|+++|+++|+|+
T Consensus 167 ~~~~~~~~~~~~~~~~~~-----d~~~le~~l~~~~~~~~~vi~~p~~~~~G~~~-~~~~~l~~l~~l~~~~~~~li~DE 240 (427)
T 3fq8_A 167 SPGVPKKTTANTLTTPYN-----DLEAVKALFAENPGEIAGVILEPIVGNSGFIV-PDAGFLEGLREITLEHDALLVFDE 240 (427)
T ss_dssp CSSSCHHHHTTEEEEETT-----CHHHHHHHHHHSTTTEEEEEECSSBCTTSCBC-CCTTHHHHHHHHHHHTTCEEEEEC
T ss_pred CCCCCCcccCceeecCCC-----CHHHHHHHHHhCCCCEEEEEEcCCcCCCCCcC-CCHHHHHHHHHHHHHcCCEEEEec
Confidence 111 24555553 8999999998655578888877654 578776 6 9999999999999999999
Q ss_pred cccccccCCCCC-----CccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCC
Q 001989 768 ANMNAQVGLTSP-----GYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTI 842 (985)
Q Consensus 768 a~~~~~~~l~~p-----g~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i 842 (985)
+|. ++ ..... ....+|++++| |+|+ +|.++|++++++++.+.+...... ..
T Consensus 241 v~~-g~-~~g~~~~~~~~~~~~di~t~s--K~~~-----~G~~~G~~~~~~~~~~~~~~~~~~---------------~~ 296 (427)
T 3fq8_A 241 VIT-GF-RIAYGGVQEKFGVTPDLTTLG--KIIG-----GGLPVGAYGGKREIMQLVAPAGPM---------------YQ 296 (427)
T ss_dssp TTT-BT-TTBTTHHHHHTTCCCSEEEEC--GGGG-----TTSSCEEEEECHHHHTTBTTTSSB---------------CC
T ss_pred ccc-cc-ccCcchhhHhcCCCCChhhhh--hhhh-----CCcceEEEEEcHHHHHhhccCCCc---------------cc
Confidence 984 22 11110 11236887665 9885 356789999998877655321000 00
Q ss_pred CCcchhhhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhcc---CCe--eecCCCCceeeEEEEEecCcc----
Q 001989 843 AAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKH---YPI--LFRGVNGTVAHEFIVDLRGLK---- 913 (985)
Q Consensus 843 ~s~~~g~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~g---~~l--~~~~~~~~~~~~~iv~~~~~~---- 913 (985)
.+++.+++..++++.+.+..+..+++ .++..++.++++++|++. +.+ ...+. +. + +.+.+....
T Consensus 297 ~~t~~~~~~~~aa~~aal~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-g~-~--~~~~~~~~~~~~~ 369 (427)
T 3fq8_A 297 AGTLSGNPLAMTAGIKTLELLRQPGT---YEYLDQITKRLSDGLLAIAQETGHAACGGQV-SG-M--FGFFFTEGPVHNY 369 (427)
T ss_dssp CCTTTTCHHHHHHHHHHHHHHTSTTH---HHHHHHHHHHHHHHHHHHHHHTTCCCEEEEE-TT-E--EEEESSSCCCCSH
T ss_pred cCCCCcCHHHHHHHHHHHHHHHhcCH---HHHHHHHHHHHHHHHHHHHHhCCCCeEEEEe-ee-E--EEEEEecCccccc
Confidence 01122244555556666776654443 345667777788777651 222 11110 11 1 233332100
Q ss_pred ----ccCCCCHHHHHHHHHHCCCccCCCCCCCCCEEEEeccCCCCHHHHHHHHccCChhHHHHh
Q 001989 914 ----NTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHR 973 (985)
Q Consensus 914 ----~~~g~~~~~v~~~L~~~Gi~~~~~~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~ 973 (985)
...+....++.+.|.++|+.+..... .|++++..+|+|||++ +++.|++++++
T Consensus 370 ~~~~~~~~~~~~~l~~~l~~~Gi~v~~~~~-----~r~~~~~~~t~e~i~~--~l~~l~~~l~~ 426 (427)
T 3fq8_A 370 EDAKKSDLQKFSRFHRGMLEQGIYLAPSQF-----EAGFTSLAHTEEDIDA--TLAAARTVMSA 426 (427)
T ss_dssp HHHTTSCHHHHHHHHHHHHHTTEECCSSTT-----SCEECCTTCCHHHHHH--HHHHHHHHHHH
T ss_pred cccccccHHHHHHHHHHHHHCCcEEecCCC-----CCEEeeCcCCHHHHHH--HHHHHHHHHHh
Confidence 00000145789999999998865432 2566778899999999 78888888764
|
| >2ctz_A O-acetyl-L-homoserine sulfhydrylase; crystal, O-acetyl homoserine sulfhydrase, structural genomic structural genomics/proteomics initiative; HET: PLP; 2.60A {Thermus thermophilus} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.72 E-value=2.7e-16 Score=182.38 Aligned_cols=295 Identities=16% Similarity=0.062 Sum_probs=183.2
Q ss_pred HHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEe-Cc--
Q 001989 212 SLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVS-DL-- 288 (985)
Q Consensus 212 ~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v-~~-- 288 (985)
...++++.+|+++|.+. ..++.+||+++++++.++ + ++||+||++...|+++...+..+++..|++++.+ +.
T Consensus 59 ~~~~l~~~la~~~g~~~--~v~~~sGt~A~~~~l~~~-~--~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~d 133 (421)
T 2ctz_A 59 TVDVLEKRLAALEGGKA--ALATASGHAAQFLALTTL-A--QAGDNIVSTPNLYGGTFNQFKVTLKRLGIEVRFTSREER 133 (421)
T ss_dssp HHHHHHHHHHHHHTCSE--EEEESSHHHHHHHHHHHH-C--CTTCEEEECSCCCHHHHHHHHTHHHHTTCEEEECCTTCC
T ss_pred HHHHHHHHHHHHhCCCc--eEEecCHHHHHHHHHHHH-h--CCCCEEEEeCCCchHHHHHHHHHHHHcCCEEEEECCCCC
Confidence 45678899999999873 456777787777766554 2 3889999999999999999865555679999999 65
Q ss_pred -hhhhc-cCCCEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCc-cccCCCCCCcccceEEEecC-ccccccC
Q 001989 289 -KDIDY-KSGDVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLL-ALTILKPPGELGADIVVGSA-QRFGVPM 363 (985)
Q Consensus 289 -~~l~~-l~~~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~-~lg~l~~~~~~GaDi~v~s~-k~lg~P~ 363 (985)
+++++ ++++|++|++.+| |.+|.+.|+++|+++||++|+++++| +.+ +.|....+..+|+|++++|. |.|++|
T Consensus 134 ~~~l~~~i~~~~~~v~~~~~~n~~G~~~~l~~i~~~a~~~g~~livD-~~~~~~g~~~~~~~~~~Di~~~s~~K~l~~~- 211 (421)
T 2ctz_A 134 PEEFLALTDEKTRAWWVESIGNPALNIPDLEALAQAAREKGVALIVD-NTFGMGGYLLRPLAWGAALVTHSLTKWVGGH- 211 (421)
T ss_dssp HHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEE-CGGGGGGTSCCGGGGTCSEEEEETTTTTTCS-
T ss_pred HHHHHHhhccCCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEE-CCcccccccCCccccCCeEEEECCcccccCC-
Confidence 45666 8889999999987 78999999999999999999999995 355 66654456678999999998 877654
Q ss_pred CCCCCcEEEEEEch--hh----HhcCCCceeeeeecCCCCcceeeecccc--cccccccccCCCcc--chhHHHHHHHHH
Q 001989 364 GYGGPHAAFLATSQ--EY----KRMMPGRIVGVSIDSSGKPALRVAMQTR--EQHIRRDKATSNIC--TAQALLANMAAM 433 (985)
Q Consensus 364 ~~GGP~~G~l~~~~--~~----~~~lp~~~vG~t~d~~g~~~~~l~l~tr--e~~irre~atsni~--t~~~l~a~~aa~ 433 (985)
|+|-.|+++.++ ++ .+.+.+...|+. |.. +.-.+... ....|.+. .+.+ ...++ .+
T Consensus 212 --g~~~G~~~~~~~~~~~~~~~~~~l~~~~~g~~----g~~-~~~~~~~~~~~~~~r~~~--~~~~g~~~~~~---~a-- 277 (421)
T 2ctz_A 212 --GAVIAGAIVDGGNFPWEGGRYPLLTEPQPGYH----GLR-LTEAFGELAFIVKARVDG--LRDQGQALGPF---EA-- 277 (421)
T ss_dssp --SCCCCEEEEECSCSCCTTTTCHHHHSCBGGGT----TBC-HHHHHGGGHHHHHHHHTH--HHHHCCCCCHH---HH--
T ss_pred --CCcEEEEEEeccchhhcccchhhhccccchhh----hhh-hhhhcchhHHHHHHHHHH--HHhcCCCCCHH---HH--
Confidence 222234555422 22 222322222210 000 00000000 00111110 0000 00111 11
Q ss_pred HHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcC-C-----------------CCcceEEEecCC-HHHHHHHHHH
Q 001989 434 YAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQG-L-----------------PFFDTVKVKCAD-AHAIASAAYK 494 (985)
Q Consensus 434 ~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~-~-----------------~~~~~~~~~~~~-~~~v~~~L~~ 494 (985)
|+...+.+-+....++..++++++.+.|+++.+++.+. + .....+.|.+++ ..+..+.+.+
T Consensus 278 ~~~~~~l~~l~~r~~~~~~~a~~l~~~L~~~p~v~~v~~p~~~~~~~~~~~~~~~~~~~g~ivsf~l~~~~~~~~~~~~~ 357 (421)
T 2ctz_A 278 WVVLLGMETLSLRAERHVENTLHLAHWLLEQPQVAWVNYPGLPHHPHHDRAQKYFKGKPGAVLTFGLKGGYEAAKRFISR 357 (421)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTCTTHHHHHHHHTTCCCSEEEEEETTHHHHHHHHHHT
T ss_pred HHHHcCcchHHHHHHHHHHhHHHHHHHHHhCCCeeEEECCCCCCCCCHHHHHHhccCCCceEEEEEeCCCHHHHHHHHHh
Confidence 11222233345556666789999999999984487652 1 122357777765 3344444433
Q ss_pred c---Cceeee---------------------------ecCCeEEEEeccCCCHHHHHHHHHHH
Q 001989 495 I---EMNLRV---------------------------VDSNTVTASFDETTTLEDVDKLFIVF 527 (985)
Q Consensus 495 ~---GI~~~~---------------------------~~~~~lris~t~~~t~edId~li~aL 527 (985)
. ++.++. +.++.||+|++..+.++.|+.|.++|
T Consensus 358 l~~~~~~~~~G~~~sl~~~~~~~~h~~~~~~~~~~~g~~~~~vRlS~g~e~~~~li~~l~~al 420 (421)
T 2ctz_A 358 LKLISHLANVGDTRTLAIHPASTTHSQLSPEEQAQAGVSPEMVRLSVGLEHVEDLKAELKEAL 420 (421)
T ss_dssp CSSSEECSCCCCSSCEEECGGGTTTTTSCHHHHHHHTCCTTEEEEECCSSCHHHHHHHHHHHT
T ss_pred CCcceecccCCCCCceeeCCcccccccCCHHHHHhcCCCCCeEEEEeCCCCHHHHHHHHHHHh
Confidence 2 221110 11478999999887777777776665
|
| >1w23_A Phosphoserine aminotransferase; pyridoxal-5'-phosphate; HET: PGE PLP EPE; 1.08A {Bacillus alcalophilus} SCOP: c.67.1.4 PDB: 2bhx_A* 2bi1_A* 2bi2_A* 2bi3_A* 2bi5_A* 2bi9_A* 2bia_A* 2bie_A* 2big_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=7e-16 Score=174.15 Aligned_cols=320 Identities=10% Similarity=0.036 Sum_probs=204.0
Q ss_pred cCCCCCCCCCcHHHHHHHHhCCcccc--ccCCChh-hHhhhHHHHHHHHHHHHHHhcCCC-Ccceeeccch-HHHHHHHH
Q 001989 171 IGMGYYNTHVPPVILRNIMENPAWYT--QYTPYQA-EIAQGRLESLLNFQTMIADLTGLP-MSNASLLDEG-TAAAEAMA 245 (985)
Q Consensus 171 lG~g~y~~~~p~~v~~~i~~~~~~~t--~~~pyq~-e~sqg~l~~i~e~q~~ia~L~g~~-~~~~sl~~~~-ta~~ea~~ 245 (985)
+..|.+ ..|+.+.+++.+.-.-+. ..+.|.. ..+.+..+.+.++++.+++++|.+ +.++.+++|+ |.+++++.
T Consensus 7 ~~~g~~--~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~~v~~~~g~gt~al~~~~ 84 (360)
T 1w23_A 7 FNAGPS--ALPKPALERAQKELLNFNDTQMSVMELSHRSQSYEEVHEQAQNLLRELLQIPNDYQILFLQGGASLQFTMLP 84 (360)
T ss_dssp CCSSSC--CCCHHHHHHHHHTSSSSTTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHH
T ss_pred ecCCCc--CCCHHHHHHHHHHhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEECCcchHHHHHHH
Confidence 345543 577777656554321110 0122211 014566678889999999999997 3578888888 88888777
Q ss_pred HHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc---------hhhhc--cCCCEeEEEEEcC-CCCeeec
Q 001989 246 MCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL---------KDIDY--KSGDVCGVLVQYP-GTEGEVL 313 (985)
Q Consensus 246 ~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~---------~~l~~--l~~~t~~V~v~~p-n~~G~v~ 313 (985)
+++....+++++|+++...|++... ++..| +++.++. +++++ ++++|++|++.+| |++|.+.
T Consensus 85 ~~l~~~~~~g~~vi~~~~~~~~~~~-----~~~~g-~~~~v~~~~~~~~~d~~~l~~~~i~~~~k~v~~~~~~nptG~~~ 158 (360)
T 1w23_A 85 MNLLTKGTIGNYVLTGSWSEKALKE-----AKLLG-ETHIAASTKANSYQSIPDFSEFQLNENDAYLHITSNNTIYGTQY 158 (360)
T ss_dssp HHHCCTTCEEEEEECSHHHHHHHHH-----HHTTS-EEEEEEECGGGTSCSCCCGGGCCCCTTEEEEEEESEETTTTEEC
T ss_pred HHhcCCCCcccEEEecchhHHHHHH-----HHHhC-CeEEeecccccCcCCccchHhhccCCCCCEEEEeCCCCCcceec
Confidence 6653211246778888777776322 23468 8777654 24543 5678999999987 8899996
Q ss_pred cHHHHHHHHHhCCcEEEEEecCccccCCC-CCCcccceEEEecC-ccccccCCCCCCcEEEEEEchhhHhcCCCceeeee
Q 001989 314 DYGDFIKNAHANGVKVVMATDLLALTILK-PPGELGADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVS 391 (985)
Q Consensus 314 di~~I~~~a~~~galliV~a~~~~lg~l~-~~~~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t 391 (985)
| +|. +++|+++++| +.++.+... +..++ |+++++. |.|+ | +|+|++++++++++++.... ++
T Consensus 159 ~--~i~---~~~~~~li~D-~a~~~~~~~~~~~~~--di~~~s~sK~~~-~-----~G~G~~~~~~~~~~~~~~~~-~~- 222 (360)
T 1w23_A 159 Q--NFP---EINHAPLIAD-MSSDILSRPLKVNQF--GMIYAGAQKNLG-P-----SGVTVVIVKKDLLNTKVEQV-PT- 222 (360)
T ss_dssp S--SCC---CCCSSCEEEE-CTTTTTSSCCCGGGC--SEEEEETTTTTS-C-----TTCEEEEEEHHHHCSCCTTC-CG-
T ss_pred c--ccc---ccCCceEEEe-chhhcCCCCcCcccC--CEEEEEcccccC-C-----CCcEEEEEcHHHHhhcccCC-cc-
Confidence 6 333 3799999995 344554332 12233 8999998 6553 3 34899999999887764321 11
Q ss_pred ecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcc-hHHHHHHHHHHHHHHHHHHHhcCCCe-EE
Q 001989 392 IDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPE-GLKTIAQRVHGLAGTFALGLKKLGTV-EV 469 (985)
Q Consensus 392 ~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~-Gl~~i~~~~~~~a~~l~~~L~~~g~~-~~ 469 (985)
.+......+ .+...+|+|+ ....++.+++ .++..+ |++++.++..++++++.+.|++++++ .+
T Consensus 223 ---------~~~~~~~~~-~~~~~~~~~~---~~~~~~~~al--~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~ 287 (360)
T 1w23_A 223 ---------MLQYATHIK-SDSLYNTPPT---FSIYMLRNVL--DWIKDLGGAEAIAKQNEEKAKIIYDTIDESNGFYVG 287 (360)
T ss_dssp ---------GGCHHHHHH-TTTCSSCCCH---HHHHHHHHHH--HHHHHTTHHHHHHHHHHHHHHHHHHHHHTTTTSSEE
T ss_pred ---------hhhhhhhhh-ccCCCCCCCH---HHHHHHHHHH--HHHHHhcCHHHHHHHHHHHHHHHHHHHHHccCcccc
Confidence 111000000 1112234443 2333444443 444344 78999999999999999999998645 54
Q ss_pred cCCC--Ccc-eEEEecCC---HHHHHHHHHHcCceeeee--cCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 470 QGLP--FFD-TVKVKCAD---AHAIASAAYKIEMNLRVV--DSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 470 ~~~~--~~~-~~~~~~~~---~~~v~~~L~~~GI~~~~~--~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
...+ ... .+.+..++ ..++.+.|.++||.+... .++.+|++++.++|++|+++++++|+.
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~iRis~~~~~~~~~i~~~~~~l~~ 355 (360)
T 1w23_A 288 HAEKGSRSLMNVTFNLRNEELNQQFLAKAKEQGFVGLNGHRSVGGCRASIYNAVPIDACIALRELMIQ 355 (360)
T ss_dssp SSCGGGBCSSEEEEECSSHHHHHHHHHHHHHTTEESCBCCTTTCSEEEECCTTSCHHHHHHHHHHHHH
T ss_pred cCCchhccCcEEEEEcCCCccHHHHHHHHHHCCeeeecCCCCCCeEEEEecCCCCHHHHHHHHHHHHH
Confidence 3111 223 45666664 567888899999987543 247899999999999999999999873
|
| >3dr4_A Putative perosamine synthetase; deoxysugar, pyridoxal phosphate, aspartate aminotransferase, O-antigen; HET: G4M; 1.60A {Caulobacter crescentus} PDB: 3dr7_A* 3bn1_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=3.3e-16 Score=179.42 Aligned_cols=278 Identities=15% Similarity=0.143 Sum_probs=186.1
Q ss_pred HHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc---
Q 001989 212 SLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL--- 288 (985)
Q Consensus 212 ~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~--- 288 (985)
...++++.+|+++|.+ ++.++++||.++++++.++.. ++||+|+++...|+++..+++. .|++++.++.
T Consensus 57 ~~~~l~~~la~~~~~~--~~i~~~~gt~al~~~l~~~~~--~~gd~vl~~~~~~~~~~~~~~~----~g~~~~~~~~~~~ 128 (391)
T 3dr4_A 57 FIVEFEKAFADYCGVK--HAIACNNGTTALHLALVAMGI--GPGDEVIVPSLTYIASANSVTY----CGATPVLVDNDPR 128 (391)
T ss_dssp HHHHHHHHHHHHHTCS--EEEEESSHHHHHHHHHHHHTC--CTTCEEEEESSSCTHHHHHHHH----TTCEEEEECBCTT
T ss_pred HHHHHHHHHHHHhCCC--cEEEeCCHHHHHHHHHHHcCC--CCcCEEEECCCchHHHHHHHHH----CCCEEEEEecCcc
Confidence 3557889999999987 577889999888877766533 3889999999999999988763 5888888764
Q ss_pred ------hhhhc-cCCCEeEEEEEcCCCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCCC---CCcccceEEEec--C
Q 001989 289 ------KDIDY-KSGDVCGVLVQYPGTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKP---PGELGADIVVGS--A 356 (985)
Q Consensus 289 ------~~l~~-l~~~t~~V~v~~pn~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~~---~~~~GaDi~v~s--~ 356 (985)
+++++ +++++++|+++ |++|.+.|+++|.++|+++|+++++| +..+.|.... .+.+ .|+++.+ .
T Consensus 129 ~~~~d~~~l~~~~~~~~~~v~~~--n~tG~~~~~~~i~~l~~~~~~~li~D-~a~~~g~~~~~~~~~~~-~di~~~S~s~ 204 (391)
T 3dr4_A 129 TFNLDAAKLEALITPRTKAIMPV--HLYGQICDMDPILEVARRHNLLVIED-AAEAVGATYRGKKSGSL-GDCATFSFFG 204 (391)
T ss_dssp TCSBCGGGSGGGCCTTEEEECCB--CGGGCCCCHHHHHHHHHHTTCEEEEE-CTTCTTCEETTEETTSS-SSEEEEECBT
T ss_pred ccCcCHHHHHHhcCCCceEEEEE--CCCCChhhHHHHHHHHHHcCCEEEEE-CcccccceECCeeeccc-CCEEEEECCC
Confidence 34555 77889988864 57899999999999999999999995 3445543322 2333 3777666 5
Q ss_pred -ccccccCCCCCCcEEEEEEch-hhHhcCCCce-eeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHH
Q 001989 357 -QRFGVPMGYGGPHAAFLATSQ-EYKRMMPGRI-VGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAM 433 (985)
Q Consensus 357 -k~lg~P~~~GGP~~G~l~~~~-~~~~~lp~~~-vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~ 433 (985)
|.|++ +.+|++.+++ ++.+.+.... .|.+.+ .. |.. ...| .|. .+.++.+++
T Consensus 205 ~K~l~~------g~gg~~~~~~~~~~~~~~~~~~~g~~~~---~~-~~~----------~~~g-~~~----~~~~l~aa~ 259 (391)
T 3dr4_A 205 NAIITT------GEGGMITTNDDDLAAKMRLLRGQGMDPN---RR-YWF----------PIVG-FNY----RMTNIQAAI 259 (391)
T ss_dssp TSSSCC------BSCEEEEESCHHHHHHHHHHHBTTCCTT---ST-TCC----------SSCC-CBC----BCCHHHHHH
T ss_pred CCcCCc------CCeEEEEECCHHHHHHHHHHHhcCCCCC---Cc-ccc----------cccc-ccc----CCCHHHHHH
Confidence 65532 2346666654 4544432111 111000 00 100 0111 111 111223333
Q ss_pred HHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCC-------CCcceEEEecC---C--HHHHHHHHHHcCceeee
Q 001989 434 YAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGL-------PFFDTVKVKCA---D--AHAIASAAYKIEMNLRV 501 (985)
Q Consensus 434 ~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~-------~~~~~~~~~~~---~--~~~v~~~L~~~GI~~~~ 501 (985)
.+...++++++.++..++++++++.|+++| +++... ..+..+.+..+ + ..++.+.|.++||.++.
T Consensus 260 --~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~L~~~GI~v~~ 336 (391)
T 3dr4_A 260 --GLAQLERVDEHLAARERVVGWYEQKLARLG-NRVTKPHVALTGRHVFWMYTVRLGEGLSTTRDQVIKDLDALGIESRP 336 (391)
T ss_dssp --HHHHHHTHHHHHHHHHHHHHHHHHHHGGGT-TSEECCCCCTTSCCCCSSEEEEECSSCSSCHHHHHHHHHHTTCCCEE
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-ccccCcCCCCCCcceeEEEEEEECCccchhHHHHHHHHHHCCCceee
Confidence 222235788899999999999999999985 766532 12223455443 2 88999999999997753
Q ss_pred ec------------------------CCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 502 VD------------------------SNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 502 ~~------------------------~~~lris~t~~~t~edId~li~aL~~ 529 (985)
.. ...+|++++..+|+||||+++++|.+
T Consensus 337 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~t~edi~~~~~~l~~ 388 (391)
T 3dr4_A 337 VFHPMHIMPPYAHLATDDLKIAEACGVDGLNLPTHAGLTEADIDRVIAALDQ 388 (391)
T ss_dssp CCCCGGGSGGGGGGCCTTCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHT
T ss_pred cCCccccChhhhhcCcCCChHHHHHHhCeEEccCCCCCCHHHHHHHHHHHHH
Confidence 21 25699999999999999999999975
|
| >3cog_A Cystathionine gamma-lyase; CTH, PLP, propargylglycine, SGC, inhibitor, structural genom stockholm, structural genomics consortium; HET: PLP; 2.00A {Homo sapiens} PDB: 2nmp_A* 3elp_B | Back alignment and structure |
|---|
Probab=99.72 E-value=1.5e-16 Score=183.39 Aligned_cols=162 Identities=20% Similarity=0.204 Sum_probs=122.6
Q ss_pred HHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHH----HHHCCcEEEEEcC
Q 001989 634 FNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPAT----AAMCGMKIVSVGT 709 (985)
Q Consensus 634 ~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~----a~~~G~~vv~v~~ 709 (985)
..++++.+++++|.+ ..+.+++|++|+..++ + + ..++++||+++..|+.+... ++..|++++.++.
T Consensus 69 ~~~l~~~la~~~g~~-~~i~~~sG~~ai~~~~---~-l-----~~~gd~Vl~~~~~y~~~~~~~~~~~~~~G~~v~~v~~ 138 (403)
T 3cog_A 69 RNCLEKAVAALDGAK-YCLAFASGLAATVTIT---H-L-----LKAGDQIICMDDVYGGTNRYFRQVASEFGLKISFVDC 138 (403)
T ss_dssp HHHHHHHHHHHHTCS-EEEEESCHHHHHHHHH---T-T-----SCTTCEEEEESSCCHHHHHHHHHTGGGGTCEEEEECT
T ss_pred HHHHHHHHHHHhCCC-cEEEECCHHHHHHHHH---H-H-----hCCCCEEEEeCCCcchHHHHHHHHHHHcCCEEEEECC
Confidence 457889999999987 4566677876654333 2 2 14678999988877654332 3567999999997
Q ss_pred CCCCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccCHHHHHHHHHHcC-CEEEEEccccccccCCCCCCccCCcEE
Q 001989 710 DAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDNG-GQVYMDGANMNAQVGLTSPGYIGADVC 787 (985)
Q Consensus 710 d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~g-alliVD~a~~~~~~~l~~pg~~g~Di~ 787 (985)
+ |+++|+++++ ++|++|++++| |++|.+. |+++|+++|+++| +++++|+++... .+..|..+++|++
T Consensus 139 ~-----d~~~l~~~i~---~~t~~v~~~~p~nptG~~~-~l~~i~~la~~~g~~~livD~~~~~~--~~~~~~~~~~div 207 (403)
T 3cog_A 139 S-----KIKLLEAAIT---PETKLVWIETPTNPTQKVI-DIEGCAHIVHKHGDIILVVDNTFMSP--YFQRPLALGADIS 207 (403)
T ss_dssp T-----SHHHHHHHCC---TTEEEEEEESSCTTTCCCC-CHHHHHHHHTSSSCCEEEEECTTTCT--TTCCTTTTTCSEE
T ss_pred C-----CHHHHHHhcC---cCCeEEEEECCCCCCCeee-CHHHHHHHHHHcCCCEEEEECCCccc--ccCCccccCCeEE
Confidence 5 8999999997 79999999999 5799998 8999999999999 999999998532 2234556789999
Q ss_pred EeCCcccccccCCCCCCceEEEEEc-ccccCcC
Q 001989 788 HLNLHKTFCIPHGGGGPGMGPIGVK-KHLAPFL 819 (985)
Q Consensus 788 ~~s~hK~l~~p~g~GGPg~G~i~~~-~~l~~~l 819 (985)
+.|+||+|+.| ||-.+|+++++ +++.+.+
T Consensus 208 ~~S~sK~~~g~---~~~~~G~v~~~~~~l~~~l 237 (403)
T 3cog_A 208 MYSATKYMNGH---SDVVMGLVSVNCESLHNRL 237 (403)
T ss_dssp EEETTTTTTCS---SCCCCEEEEECCHHHHHHH
T ss_pred EEcChhhccCC---CCCeEEEEEECcHHHHHHH
Confidence 99999998522 12235999985 4554433
|
| >1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent enzymes, C-S gamma lyase; HET: PPJ; 2.18A {Trichomonas vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=1.8e-15 Score=174.57 Aligned_cols=272 Identities=17% Similarity=0.133 Sum_probs=183.8
Q ss_pred HHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc---
Q 001989 212 SLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL--- 288 (985)
Q Consensus 212 ~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~--- 288 (985)
...++++.+|+++|.+ ++.++.+|+.++..++.++ . ++||+|+++...|+++...|+..++..|++++.++.
T Consensus 63 ~~~~l~~~ia~~~g~~--~~i~~~~g~~ai~~~~~~l-~--~~gd~Vl~~~~~y~~~~~~~~~~~~~~g~~~~~v~~~d~ 137 (404)
T 1e5e_A 63 TVSNLEGKIAFLEKTE--ACVATSSGMGAIAATVLTI-L--KAGDHLISDECLYGCTHALFEHALTKFGIQVDFINTAIP 137 (404)
T ss_dssp HHHHHHHHHHHHHTCS--EEEEESSHHHHHHHHHHHH-C--CTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECTTST
T ss_pred HHHHHHHHHHHHhCCC--cEEEeCChHHHHHHHHHHH-h--CCCCEEEEeCCCchhHHHHHHHHHHHcCCEEEEECCCCH
Confidence 3456888999999986 4677888887776666554 2 389999999999999999776545568999999875
Q ss_pred hhhhc-cCCCEeEEEEEcC-CCCeeeccHHHHHHHHHh-CCcEEEEEecCccccCCCCCCcccceEEEecC-ccccccCC
Q 001989 289 KDIDY-KSGDVCGVLVQYP-GTEGEVLDYGDFIKNAHA-NGVKVVMATDLLALTILKPPGELGADIVVGSA-QRFGVPMG 364 (985)
Q Consensus 289 ~~l~~-l~~~t~~V~v~~p-n~~G~v~di~~I~~~a~~-~galliV~a~~~~lg~l~~~~~~GaDi~v~s~-k~lg~P~~ 364 (985)
+++++ ++++|++|++.+| |++|.+.|+++|+++|++ +|+++++| +.++.+....|.++|+|+++.|. |+|++|
T Consensus 138 ~~l~~~i~~~t~~v~l~~p~NptG~v~~l~~i~~la~~~~~~~li~D-e~~~~~~~~~~~~~~~di~~~S~sK~~~~~-- 214 (404)
T 1e5e_A 138 GEVKKHMKPNTKIVYFETPANPTLKIIDMERVCKDAHSQEGVLVIAD-NTFCSPMITNPVDFGVDVVVHSATKYINGH-- 214 (404)
T ss_dssp THHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHTSTTCEEEEE-CTTTCTTTCCGGGGTCSEEEEETTTTTTCS--
T ss_pred HHHHHhcCCCCcEEEEECCCCCCCcccCHHHHHHHHHhhcCCEEEEE-CCCchhhhCCccccCCEEEEEcCccccCCC--
Confidence 45666 7889999999998 789999999999999999 99999995 45554444445678999999998 877643
Q ss_pred CCCCcEEEEEEchhhHh-cCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcchH
Q 001989 365 YGGPHAAFLATSQEYKR-MMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGL 443 (985)
Q Consensus 365 ~GGP~~G~l~~~~~~~~-~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl 443 (985)
|++-+|++++++++++ .+.....+ + .+ .+. .++ +..+++ ..+ +.+
T Consensus 215 -g~ri~G~~~~~~~~~~~~l~~~~~~----------~--------------~g-~~~---~~~-~~~~~~--~~l--~~~ 260 (404)
T 1e5e_A 215 -TDVVAGLICGKADLLQQIRMVGIKD----------I--------------TG-SVI---SPH-DAWLIT--RGL--STL 260 (404)
T ss_dssp -SCCCCEEEEECHHHHHHHHHTCCCC----------C--------------CC-CCC---CHH-HHHHHH--HHH--TTH
T ss_pred -CCCeEEEEEECHHHHHHHHHHHHHh----------C--------------CC-CCC---CHH-HHHHHH--HhH--hHH
Confidence 2222489999988766 54210000 0 00 001 111 111111 111 234
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCeE-Ec-CC----C-----------CcceEEEecCC-HHHHHHHHHHcCceeee----
Q 001989 444 KTIAQRVHGLAGTFALGLKKLGTVE-VQ-GL----P-----------FFDTVKVKCAD-AHAIASAAYKIEMNLRV---- 501 (985)
Q Consensus 444 ~~i~~~~~~~a~~l~~~L~~~g~~~-~~-~~----~-----------~~~~~~~~~~~-~~~v~~~L~~~GI~~~~---- 501 (985)
+...++..+++.++.+.|++...+. ++ .. | ..+-+.|.+++ ..++.+.|.+.||.+..
T Consensus 261 ~~~~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~i~~~~~s~G 340 (404)
T 1e5e_A 261 NIRMKAESENAMKVAEYLKSHPAVEKVYYPGFEDHEGHDIAKKQMRMYGSMITFILKSGFEGAKKLLDNLKLITLAVSLG 340 (404)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCTTEEEEECTTCSSSTTHHHHHHHCSSCCSEEEEEETTHHHHHHHHHHTCSSSEESSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEeCCCHHHHHHHHHhCCCceeccCCC
Confidence 5566666778888888887763243 21 11 1 13346677766 45667777777874321
Q ss_pred --------------------------ecCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 502 --------------------------VDSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 502 --------------------------~~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
+.++.+|+|++. ||+|++++.|.+
T Consensus 341 ~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~g~----e~~~~li~~l~~ 390 (404)
T 1e5e_A 341 GCESLIQHPASMTHAVVPKEEREAAGITDGMIRLSVGI----EDADELIADFKQ 390 (404)
T ss_dssp SSSCEEECGGGTTTTTSCHHHHHHTTCCTTEEEEECCS----SCHHHHHHHHHH
T ss_pred CcceeeecccccccccCCHHHHHhcCCCCCeEEEEeCC----CCHHHHHHHHHH
Confidence 114789999997 778888777764
|
| >2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI structure initiative, joint center for structural genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.71 E-value=2.4e-15 Score=173.40 Aligned_cols=319 Identities=9% Similarity=0.088 Sum_probs=202.6
Q ss_pred HHHHHHHHhcCCCccceecCCCCCCCCCcHHHHHHHHhCCc-cccccCCChhhHhhhHHHHHHHHHHHHHHhc----C--
Q 001989 153 MIEHMQKLASMNKVYKSFIGMGYYNTHVPPVILRNIMENPA-WYTQYTPYQAEIAQGRLESLLNFQTMIADLT----G-- 225 (985)
Q Consensus 153 ~~~~~~~l~~~n~~~~~~lG~g~y~~~~p~~v~~~i~~~~~-~~t~~~pyq~e~sqg~l~~i~e~q~~ia~L~----g-- 225 (985)
+.+.+.++...+..+.+ ++.|.++...|+.+.+++ +.-+ ....|.+. +|. .++++.+|+++ |
T Consensus 31 ~~~~~~~~~~~g~~~i~-l~~~~~~~~~~~~v~~a~-~~l~~~~~~y~~~-----~g~----~~l~~~la~~~~~~~g~~ 99 (409)
T 2gb3_A 31 LVPFAEMAKKRGVRIHH-LNIGQPDLKTPEVFFERI-YENKPEVVYYSHS-----AGI----WELREAFASYYKRRQRVD 99 (409)
T ss_dssp GHHHHHHHHHTTCEEEE-CSSCCCCSCCCTHHHHHH-HHTCCSSCCCCCT-----TCC----HHHHHHHHHHHHHTSCCC
T ss_pred HHHHHHHHHhcCCCEEe-ccCCCCCCCCCHHHHHHH-HHHhcCCCCCCCC-----CCc----HHHHHHHHHHHHHHhCCC
Confidence 44445555444444333 344544444555555454 3211 12234331 222 23455566655 4
Q ss_pred CCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc---------hhhhc-cC
Q 001989 226 LPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL---------KDIDY-KS 295 (985)
Q Consensus 226 ~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~---------~~l~~-l~ 295 (985)
.++.++.+++|+|.+++.++.++ . ++||+|+++...|+++...++. .|.+++.++. ++|++ ++
T Consensus 100 ~~~~~v~~~~g~t~a~~~~~~~~-~--~~gd~Vl~~~~~~~~~~~~~~~----~g~~~~~v~~~~~~~~~~~~~l~~~l~ 172 (409)
T 2gb3_A 100 VKPENVLVTNGGSEAILFSFAVI-A--NPGDEILVLEPFYANYNAFAKI----AGVKLIPVTRRMEEGFAIPQNLESFIN 172 (409)
T ss_dssp CCGGGEEEESHHHHHHHHHHHHH-C--CTTCEEEEEESCCTHHHHHHHH----HTCEEEEEECCGGGTSCCCTTGGGGCC
T ss_pred CCHHHEEEeCCHHHHHHHHHHHh-C--CCCCEEEEcCCCchhHHHHHHH----cCCEEEEeccCCCCCCccHHHHHHhhC
Confidence 45568889999998888777665 2 3789999999999998887653 4677777653 44555 77
Q ss_pred CCEeEEEEEcC-CCCeeec---cHHHHHHHHHhCCcEEEEEecCccccCCC----CC-Cc-ccceEEEecC-ccccccCC
Q 001989 296 GDVCGVLVQYP-GTEGEVL---DYGDFIKNAHANGVKVVMATDLLALTILK----PP-GE-LGADIVVGSA-QRFGVPMG 364 (985)
Q Consensus 296 ~~t~~V~v~~p-n~~G~v~---di~~I~~~a~~~galliV~a~~~~lg~l~----~~-~~-~GaDi~v~s~-k~lg~P~~ 364 (985)
+++++|++.+| |.+|.+. ++++|.++|+++|+++++|. ..+.+... +. .. .+.|++++|. |.|+.|
T Consensus 173 ~~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De-a~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~-- 249 (409)
T 2gb3_A 173 ERTKGIVLSNPCNPTGVVYGKDEMRYLVEIAERHGLFLIVDE-VYSEIVFRGEFASALSIESDKVVVIDSVSKKFSAC-- 249 (409)
T ss_dssp TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEC-TTTTCBCSSCCCCGGGSCCTTEEEEEESTTTTTCG--
T ss_pred cCCeEEEECCCCCCCCCCcCHHHHHHHHHHHHHcCCEEEEEC-cccccccCCCCCCccccCCCCEEEEecchhccCCc--
Confidence 78999999988 6799874 69999999999999999953 33332211 10 12 3689999997 777422
Q ss_pred CCCCcEEEEEEch-hhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhH-HHHHHHHHHHHHhCcch
Q 001989 365 YGGPHAAFLATSQ-EYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQA-LLANMAAMYAVYHGPEG 442 (985)
Q Consensus 365 ~GGP~~G~l~~~~-~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~-l~a~~aa~~l~~~g~~G 442 (985)
|-.+|++++++ ++.+.+... +...+ +.+.. ..++.++ +. .+.++
T Consensus 250 --G~r~G~~~~~~~~l~~~l~~~--------------------------~~~~~---~~~~~~~~a~~~~--l~-~~~~~ 295 (409)
T 2gb3_A 250 --GARVGCLITRNEELISHAMKL--------------------------AQGRL---APPLLEQIGSVGL--LN-LDDSF 295 (409)
T ss_dssp --GGCCEEEECSCHHHHHHHHHH--------------------------HHHSC---CCCHHHHHHHHHH--HT-CCHHH
T ss_pred --cceEEEEEECcHHHHHHHHHH--------------------------HhccC---CCCHHHHHHHHHH--Hh-ccHHH
Confidence 12268999988 776654100 00011 11111 1111111 11 25667
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCeEE-cCCCCcceEEEecCC--HHHHHHHHHHc------Cceeeee---------cC
Q 001989 443 LKTIAQRVHGLAGTFALGLKKLGTVEV-QGLPFFDTVKVKCAD--AHAIASAAYKI------EMNLRVV---------DS 504 (985)
Q Consensus 443 l~~i~~~~~~~a~~l~~~L~~~g~~~~-~~~~~~~~~~~~~~~--~~~v~~~L~~~------GI~~~~~---------~~ 504 (985)
++++.++..++.+++.+.|+++| +++ ..+....-+.+..++ ..++.++|.++ ||.+... .+
T Consensus 296 ~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~gi~v~~g~~f~~~~~~~~ 374 (409)
T 2gb3_A 296 FDFVRETYRERVETVLKKLEEHG-LKRFTKPSGAFYITAELPVEDAEEFARWMLTDFNMDGETTMVAPLRGFYLTPGLGK 374 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTT-CCCBCCCSBSSEEEEECSSSCHHHHHHHHHHSCCBTTEEEECEEGGGGCSSTTTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHcC-ceeeeCCCeeEEEEEEeCCCCHHHHHHHHHhccccccCcEEEeCchHhCCCCCCCC
Confidence 88889999999999999999886 877 432111122335443 88899999887 9987542 14
Q ss_pred CeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 505 NTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 505 ~~lris~t~~~t~edId~li~aL~~ 529 (985)
+.+|++++ +|++||++++++|.+
T Consensus 375 ~~iRis~~--~~~e~i~~~~~~l~~ 397 (409)
T 2gb3_A 375 KEIRIACV--LEKDLLSRAIDVLME 397 (409)
T ss_dssp SEEEEECC--SCHHHHHHHHHHHHH
T ss_pred CEEEEEeC--CCHHHHHHHHHHHHH
Confidence 68999998 899999999999874
|
| >3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent transferase-like, structural genomics, joint C structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=99.71 E-value=7.2e-15 Score=164.24 Aligned_cols=295 Identities=15% Similarity=0.116 Sum_probs=197.8
Q ss_pred cCCCCCCCCCcHHHHHHHHhCCccccccCCChhhHhhhHHHHHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhh
Q 001989 171 IGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNI 250 (985)
Q Consensus 171 lG~g~y~~~~p~~v~~~i~~~~~~~t~~~pyq~e~sqg~l~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~ 250 (985)
++.+..|...|+.+.+++.+... .++.|. . . ...++++.+|+++|.++.++.+++|+|+++..+..++
T Consensus 21 l~~n~~~~~~~~~v~~a~~~~~~---~~~~y~-~--~----~~~~lr~~la~~~~~~~~~i~~t~G~~~~l~~~~~~~-- 88 (337)
T 3p1t_A 21 LAFNENPEAVEPRVQAAIAAAAA---RINRYP-F--D----AEPRVMRKLAEHFSCPEDNLMLVRGIDECFDRISAEF-- 88 (337)
T ss_dssp CSSCCCCSCCCHHHHHHHHHHGG---GTTSCC-T--T----HHHHHHHHHHHHHTSCGGGEEEESHHHHHHHHHHHHS--
T ss_pred eeCCCCCCCCCHHHHHHHHHhhh---hhccCC-C--C----chHHHHHHHHHHhCcCHHHEEEeCCHHHHHHHHHHhc--
Confidence 45554555677777655554322 223331 1 1 2456789999999999889999999997777665543
Q ss_pred hcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCch--------hhhccCCCEeEEEEEcC-CCCeeeccHHHHHHH
Q 001989 251 QKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDLK--------DIDYKSGDVCGVLVQYP-GTEGEVLDYGDFIKN 321 (985)
Q Consensus 251 ~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~~--------~l~~l~~~t~~V~v~~p-n~~G~v~di~~I~~~ 321 (985)
+||+|+++...|+++...+ +..|++++.++.+ ++++. .++++|++.+| |++|.+.|++++.++
T Consensus 89 ---~gd~vl~~~p~~~~~~~~~----~~~g~~~~~v~~~~~~~~d~~~l~~~-~~~~~v~i~~p~nptG~~~~~~~l~~l 160 (337)
T 3p1t_A 89 ---SSMRFVTAWPGFDGYRARI----AVSGLRHFEIGLTDDLLLDPNDLAQV-SRDDCVVLANPSNPTGQALSAGELDQL 160 (337)
T ss_dssp ---TTSEEEEESSSCSHHHHHH----TTSCCEEEEECBCTTSSBCHHHHTTC-CTTEEEEEESSCTTTCCCCCHHHHHHH
T ss_pred ---CCCeEEEeCCCcHHHHHHH----HHcCCEEEEecCCCCCCCCHHHHHhh-cCCCEEEEeCCCCCCCCCCCHHHHHHH
Confidence 7899999999999988775 3568999888753 23332 46789999998 789999999999999
Q ss_pred HHhCCcEEEEEecCcc-ccCC--CCCCcccceEEEecC-ccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCC
Q 001989 322 AHANGVKVVMATDLLA-LTIL--KPPGELGADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGK 397 (985)
Q Consensus 322 a~~~galliV~a~~~~-lg~l--~~~~~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~ 397 (985)
|+++|. +++| +..+ ++.. ..+...+.|++++|. |.|+. .|..+|++++++++++.+...
T Consensus 161 ~~~~~~-~ivD-ea~~~~~~~~~~~~~~~~~~i~~~S~sK~~g~----~G~r~G~~~~~~~~~~~l~~~----------- 223 (337)
T 3p1t_A 161 RQRAGK-LLID-ETYVDYSSFRARGLAYGENELVFRSFSKSYGL----AGLRLGALFGPSELIAAMKRK----------- 223 (337)
T ss_dssp HHHCSE-EEEE-CTTGGGSSCSSSCCCCBTTEEEEEESSSTTCC----TTTCCEEEECCHHHHHHHHTT-----------
T ss_pred HHhCCc-EEEE-CCChhhccccccccccCCCEEEEeeCchhccC----cchheEEEEeCHHHHHHHHhh-----------
Confidence 999996 5554 3332 2211 122345678999997 77753 345579999888877655110
Q ss_pred cceeeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCCCcce
Q 001989 398 PALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDT 477 (985)
Q Consensus 398 ~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~~~~~ 477 (985)
+...+.|. ....++.+ .+-..+.+++..++..++.+++.+.|+++| +++..+ ...-
T Consensus 224 ---------------~~~~~~~~---~~~~a~~~----~l~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~-~~~~ 279 (337)
T 3p1t_A 224 ---------------QWFCNVGT---LDLHALEA----ALDNDRAREAHIAKTLAQRRRVADALRGLG-YRVASS-EANF 279 (337)
T ss_dssp ---------------SCTTCSCH---HHHHHHHH----HHTCHHHHHHHHHHHHHHHHHHHHHHHHTT-CCBCCC-SSSE
T ss_pred ---------------cCCCCCCH---HHHHHHHH----HhCCHHHHHHHHHHHHHHHHHHHHHHHHCc-CEECCC-CCeE
Confidence 00011111 11212111 122223466777778888899999999986 776532 2223
Q ss_pred EEEecCCHHHHHHHHHHcCceeeeec----CCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 478 VKVKCADAHAIASAAYKIEMNLRVVD----SNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 478 ~~~~~~~~~~v~~~L~~~GI~~~~~~----~~~lris~t~~~t~edId~li~aL~~ 529 (985)
+.+..++..++.+.|.++||.+.... ++.+|+|++ +++|+++++++|++
T Consensus 280 ~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~iRis~~---~~~~~~~l~~al~~ 332 (337)
T 3p1t_A 280 VLVENAAGERTLRFLRERGIQVKDAGQFGLHHHIRISIG---REEDNDRLLAALAE 332 (337)
T ss_dssp EEEECTTTHHHHHHHHHTTEECEEGGGGTCCSEEEEECC---CHHHHHHHHHHHHH
T ss_pred EEEEcCCHHHHHHHHHHCCeEEEECccCCCCCeEEEecC---CHHHHHHHHHHHHH
Confidence 44555556678889999999886532 589999987 79999999999974
|
| >4e77_A Glutamate-1-semialdehyde 2,1-aminomutase; structural genomics, center for structural genomics of infec diseases, csgid, porphyrin biosynthesis; 2.00A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=99.71 E-value=3.3e-16 Score=181.97 Aligned_cols=290 Identities=12% Similarity=0.142 Sum_probs=172.1
Q ss_pred HHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEE-cCCCCcccHHHHHHCC-----------
Q 001989 634 FNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCII-PVSAHGTNPATAAMCG----------- 701 (985)
Q Consensus 634 ~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv-~~~~Hg~~~~~a~~~G----------- 701 (985)
..+++++++++++-....++.+||+++++.++++++.+. ++++||+ ...+||.........+
T Consensus 95 ~~~la~~l~~~~~~~~~v~~~~sGsea~~~al~~a~~~~------~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~ 168 (429)
T 4e77_A 95 EVKMAQLVTDLVPTMDMVRMVNSGTEATMSAIRLARGYT------GRDKIIKFEGCYHGHADCLLVKAGSGALTLGQPNS 168 (429)
T ss_dssp HHHHHHHHHHHSTTCSEEEEESSHHHHHHHHHHHHHHHH------CCCEEEEETTCCCC------------------CCC
T ss_pred HHHHHHHHHhhCCCCCEEEEeCcHHHHHHHHHHHHHHhh------CCCEEEEEcCccCCCChhhhhhcCCcccccCCCCc
Confidence 457888999998633345677899999988887776542 3456666 5667876643221111
Q ss_pred --c------EEEEEcCCCCCCCCHHHHHHHHHhcCCCEEEEEEEcCC-CccccccC----HHHHHHHHHHcCCEEEEEcc
Q 001989 702 --M------KIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPS-THGVYEEG----IDEICKIIHDNGGQVYMDGA 768 (985)
Q Consensus 702 --~------~vv~v~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~pn-~~G~i~~d----i~eI~~la~~~galliVD~a 768 (985)
+ .+..++. .|+++|+++++++.+++++|+++..+ +.|++. + +++|.++|+++|++||+|++
T Consensus 169 ~~~~~~~~~~~~~~~~-----~d~~~le~~l~~~~~~~~~vi~ep~~~~~g~~~-~~~~~l~~l~~l~~~~~~lli~DEv 242 (429)
T 4e77_A 169 PGVPTDFAKHTLTCTY-----NDLASVRQAFEQYPQEVACIIVEPVAGNMNCIP-PLPEFLPGLRALCDEFGALLIIDEV 242 (429)
T ss_dssp TTSCGGGGTTEEEECT-----TCHHHHHHHHHHSTTTEEEEEECSSBCTTSCBC-CCTTHHHHHHHHHHHHTCEEEEEET
T ss_pred CCCCCccCCceeecCC-----CCHHHHHHHHHhcCCCEEEEEECCccCCCCCcC-CCHHHHHHHHHHHHHcCCEEEEecc
Confidence 1 2333333 28999999998655677777765433 467776 5 99999999999999999998
Q ss_pred ccccccCCCCCC-----ccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCC
Q 001989 769 NMNAQVGLTSPG-----YIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIA 843 (985)
Q Consensus 769 ~~~~~~~l~~pg-----~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~ 843 (985)
|. ++ ...... ...+|++++ .|+|+ +|.++|++++++++.+.+...-.. ...
T Consensus 243 ~~-g~-r~g~~~~~~~~~~~pdi~t~--sK~~~-----~G~~~G~~~~~~~~~~~l~~~~~~---------------~~~ 298 (429)
T 4e77_A 243 MT-GF-RVALAGAQDYYHVIPDLTCL--GKIIG-----GGMPVGAFGGRREVMNALAPTGPV---------------YQA 298 (429)
T ss_dssp TT-BT-TTBTTCHHHHTTCCCSEEEE--EGGGG-----TTSCCEEEEECHHHHTTBTTTSSB---------------CC-
T ss_pred cc-Cc-ccCcchHHHhcCCCCCeeee--ccccc-----CCCCeEEEEECHHHHHHhccCCCc---------------ccc
Confidence 84 22 111111 123588755 48884 457788999998877655321000 000
Q ss_pred CcchhhhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhcc---CCee--ecCCCCceeeEEEEEecCccc----
Q 001989 844 AAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKH---YPIL--FRGVNGTVAHEFIVDLRGLKN---- 914 (985)
Q Consensus 844 s~~~g~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~g---~~l~--~~~~~~~~~~~~iv~~~~~~~---- 914 (985)
+++.+++..++++.+.+..+..+.+ .++..++.++++++|++. +.+. ..+ .+. + +.+.+..-..
T Consensus 299 ~t~~~~~~~~aaa~aal~~~~~~~~---~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~-~g~-~--~~~~~~~~~~~~~~ 371 (429)
T 4e77_A 299 GTLSGNPIAMAAGFACLTEISQVGV---YETLTELTDSLATGLRHAAKEENIPLVVNH-VGG-M--FGLFFTNADTVTCY 371 (429)
T ss_dssp -CCCCCHHHHHHHHHHHHHHTSTTH---HHHHHHHHHHHHHHHHHHHHHTTCCCEEEE-ETT-E--EEEECCSSSCCCSH
T ss_pred CCCCCCHHHHHHHHHHHHHHHhcCH---HHHHHHHHHHHHHHHHHHHHhCCCceEEEE-eee-E--EEEEEccCcccccc
Confidence 1112244555556666776644433 445666777777777641 2221 111 011 1 2344431000
Q ss_pred -----cCCCCHHHHHHHHHHCCCccCCCCCCCCCEEEEeccCCCCHHHHHHHHccCChhHHHHh
Q 001989 915 -----TAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHR 973 (985)
Q Consensus 915 -----~~g~~~~~v~~~L~~~Gi~~~~~~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~ 973 (985)
.......++.+.|.++||.+..... ..++ ++..+|+|||++ ++++|++++++
T Consensus 372 ~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~---~~~~--~~~~~t~e~i~~--~l~~l~~~l~~ 428 (429)
T 4e77_A 372 QDVMNCDVERFKRFFHLMLEEGVYLAPSAF---EAGF--MSLAHSNEDIQK--TVNAARRCFAK 428 (429)
T ss_dssp HHHHTSCHHHHHHHHHHHHHTTEECCSSTT---SCEE--CCTTCCHHHHHH--HHHHHHHHHTT
T ss_pred cccccccHHHHHHHHHHHHHCCeEEeecCC---CCEE--EeccCCHHHHHH--HHHHHHHHHHh
Confidence 0001136889999999998865432 2344 467899999999 77888887754
|
| >3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=99.71 E-value=2.4e-15 Score=174.63 Aligned_cols=325 Identities=12% Similarity=0.045 Sum_probs=203.7
Q ss_pred cCCCCCCCCCcHHHHHHHHhCC--ccccccCCChhhHhhhHHHHHHHHHHHHHHhcC------CCCcceeeccchHHHHH
Q 001989 171 IGMGYYNTHVPPVILRNIMENP--AWYTQYTPYQAEIAQGRLESLLNFQTMIADLTG------LPMSNASLLDEGTAAAE 242 (985)
Q Consensus 171 lG~g~y~~~~p~~v~~~i~~~~--~~~t~~~pyq~e~sqg~l~~i~e~q~~ia~L~g------~~~~~~sl~~~~ta~~e 242 (985)
++.|.++...|+.+.+++.+.- .++..|.+.+ | +.++++.+|++++ .++.++.+++|+|.+++
T Consensus 49 l~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~-----g----~~~lr~~la~~~~~~~g~~~~~~~i~~t~g~t~al~ 119 (437)
T 3g0t_A 49 MEMGVPGLPAPQIGIETEIQKLREGVASIYPNLD-----G----LPELKQEASRFAKLFVNIDIPARACVPTVGSMQGCF 119 (437)
T ss_dssp CCCCSCCSCCCHHHHHHHHHHHHHTGGGSCCCTT-----C----CHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHH
T ss_pred ccCcCCCCCCCHHHHHHHHHHHhCCcCcCCCCCC-----C----hHHHHHHHHHHHHHhhCCCCCcccEEEeCCHHHHHH
Confidence 3455556556666654443211 2224454422 1 1345667777776 56778999999998888
Q ss_pred HHHHHhhhhcCCCC--EEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc---------hhhhc-c-CCCEeEEEEEcC-CC
Q 001989 243 AMAMCNNIQKGKKK--TFIIASNCHPQTIDICITRADGFDIKVVVSDL---------KDIDY-K-SGDVCGVLVQYP-GT 308 (985)
Q Consensus 243 a~~~a~~~~~~~g~--~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~---------~~l~~-l-~~~t~~V~v~~p-n~ 308 (985)
+++.++.. .++|| +|+++...|+++...++. .|++++.++. ++|++ + ++++++|++.+| |.
T Consensus 120 ~~~~~l~~-~~~gd~~~Vl~~~p~~~~~~~~~~~----~g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~~v~l~~p~np 194 (437)
T 3g0t_A 120 VSFLVANR-THKNREYGTLFIDPGFNLNKLQCRI----LGQKFESFDLFEYRGEKLREKLESYLQTGQFCSIIYSNPNNP 194 (437)
T ss_dssp HHHHHHTT-SCTTCSCCEEEEESCCHHHHHHHHH----HTCCCEEEEGGGGCTTHHHHHHHHHHTTTCCCEEEEESSCTT
T ss_pred HHHHHHhc-CCCCCccEEEEeCCCcHhHHHHHHH----cCCEEEEEeecCCCCccCHHHHHHHHhcCCceEEEEeCCCCC
Confidence 77765521 03789 999999999999888764 3666666544 34555 6 778999999998 77
Q ss_pred Ceeecc---HHHHHHHHHhCCcEEEEEecCccccCC-------------CCC-CcccceEEEecC-ccccccCCCCCCcE
Q 001989 309 EGEVLD---YGDFIKNAHANGVKVVMATDLLALTIL-------------KPP-GELGADIVVGSA-QRFGVPMGYGGPHA 370 (985)
Q Consensus 309 ~G~v~d---i~~I~~~a~~~galliV~a~~~~lg~l-------------~~~-~~~GaDi~v~s~-k~lg~P~~~GGP~~ 370 (985)
+|.+.+ +++|+++|+++|+++++|. ..+.... ... ...+.+++++|. |.++.| |..+
T Consensus 195 tG~~~~~~~l~~i~~~a~~~~~~li~De-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~----G~r~ 269 (437)
T 3g0t_A 195 TWQCMTDEELRIIGELATKHDVIVIEDL-AYFGMDFRKDYSHPGEPLYQPSVANYTDNYILALSSSKAFSYA----GQRI 269 (437)
T ss_dssp TCCCCCHHHHHHHHHHHHHTTCEEEEEC-TTTTCCTTSCCCSTTSSCCCCCGGGTCSCEEEEEESTTTTSCG----GGCC
T ss_pred CCCcCCHHHHHHHHHHHHHCCcEEEEEc-chhhcccCCCcCcccccchhhccCCCCCcEEEEEcCccCCCCc----ccee
Confidence 998875 7889999999999999953 3332111 111 136778999997 777532 3457
Q ss_pred EEEEEchhhHh-cCCCceeeeeecCCCCcceeeecccccccccccc-cCCCccchhHHHHHHHHHHHHHh--CcchHHHH
Q 001989 371 AFLATSQEYKR-MMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDK-ATSNICTAQALLANMAAMYAVYH--GPEGLKTI 446 (985)
Q Consensus 371 G~l~~~~~~~~-~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~-atsni~t~~~l~a~~aa~~l~~~--g~~Gl~~i 446 (985)
|++++++++++ .++...-+. .+.. +. .+..++.+ .+.+..+.....+..++ +... ....++++
T Consensus 270 G~~~~~~~~~~~~~~~~~~~~----~~~~-~~------~~~~~~~~~~~~~~~~~~~~~a~~~~--l~~~~~~~~~~~~~ 336 (437)
T 3g0t_A 270 GVLMISGKLYEREYPDLEESF----GRLR-FG------EALSSSALYALSSGATHSAQWGMAAM--LKACNDGEYNFRDS 336 (437)
T ss_dssp EEEEECHHHHHCBCGGGHHHH----SCSB-HH------HHHHTTHHHHHHSSSCHHHHHHHHHH--HHHHHTTSCCHHHH
T ss_pred EEEEECHHHhhhhhhcccccc----cccc-hh------HHHHHHHHhhhcCCCCHHHHHHHHHH--HhCcHhHHHHHHHH
Confidence 99999988887 632111000 0000 00 00011111 11111111222222222 2221 11128899
Q ss_pred HHHHHHHHHHHHHHHhcCCCeEEc------CC-CCcceEEEecCC--HHHHHHHHHHcCceeeeec------CCeEEEEe
Q 001989 447 AQRVHGLAGTFALGLKKLGTVEVQ------GL-PFFDTVKVKCAD--AHAIASAAYKIEMNLRVVD------SNTVTASF 511 (985)
Q Consensus 447 ~~~~~~~a~~l~~~L~~~g~~~~~------~~-~~~~~~~~~~~~--~~~v~~~L~~~GI~~~~~~------~~~lris~ 511 (985)
.++..++.+++.+.|+++| +++. .+ ....-+.+..++ ..++.++|.++||.+.... ++.+|+|+
T Consensus 337 ~~~~~~~~~~l~~~L~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~gi~v~~~~~~~~~~~~~iRis~ 415 (437)
T 3g0t_A 337 VIEYGRKARIMKKMFLDNG-FNIVYDKDGNEPLADGFYFTVGYKGMDSSKLIEKFVRYGMCAITLKTTGSKRNEAMRICT 415 (437)
T ss_dssp HHHHHHHHHHHHHHHHTTT-EEESSCEETTEECCSSSEEEEEETTCCHHHHHHHHHHTTEECEESTTTTCCCTTCEEEEC
T ss_pred HHHHHHHHHHHHHHHHHcC-CEEeccccCCCCCceeEEEEEecCCCCHHHHHHHHHHcCeEEeeccccCCCCCCEEEEEE
Confidence 9999999999999999996 8887 12 112223445443 8899999999999886542 27799999
Q ss_pred ccCCCHHHHHHHHHHHhC
Q 001989 512 DETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 512 t~~~t~edId~li~aL~~ 529 (985)
+ ..|++||++++++|.+
T Consensus 416 ~-~~~~e~i~~~~~~l~~ 432 (437)
T 3g0t_A 416 S-LLPESQFPDLEKRLQM 432 (437)
T ss_dssp S-SSCGGGHHHHHHHHHH
T ss_pred e-cCCHHHHHHHHHHHHH
Confidence 9 4499999999999873
|
| >3cog_A Cystathionine gamma-lyase; CTH, PLP, propargylglycine, SGC, inhibitor, structural genom stockholm, structural genomics consortium; HET: PLP; 2.00A {Homo sapiens} PDB: 2nmp_A* 3elp_B | Back alignment and structure |
|---|
Probab=99.71 E-value=9.1e-16 Score=176.91 Aligned_cols=273 Identities=14% Similarity=0.092 Sum_probs=182.8
Q ss_pred HHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc---h
Q 001989 213 LLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL---K 289 (985)
Q Consensus 213 i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~---~ 289 (985)
..++++.+|+++|.+ ...++.+|++++.+++. + . ++||+|++++..|+++...+...++..|++++.++. +
T Consensus 69 ~~~l~~~la~~~g~~--~~i~~~sG~~ai~~~~~-l-~--~~gd~Vl~~~~~y~~~~~~~~~~~~~~G~~v~~v~~~d~~ 142 (403)
T 3cog_A 69 RNCLEKAVAALDGAK--YCLAFASGLAATVTITH-L-L--KAGDQIICMDDVYGGTNRYFRQVASEFGLKISFVDCSKIK 142 (403)
T ss_dssp HHHHHHHHHHHHTCS--EEEEESCHHHHHHHHHT-T-S--CTTCEEEEESSCCHHHHHHHHHTGGGGTCEEEEECTTSHH
T ss_pred HHHHHHHHHHHhCCC--cEEEECCHHHHHHHHHH-H-h--CCCCEEEEeCCCcchHHHHHHHHHHHcCCEEEEECCCCHH
Confidence 456789999999987 34566666665554443 2 2 388999999999999888887666778999999976 4
Q ss_pred hhhc-cCCCEeEEEEEcC-CCCeeeccHHHHHHHHHhCC-cEEEEEecCccccCCCCCCcccceEEEecC-ccccccCCC
Q 001989 290 DIDY-KSGDVCGVLVQYP-GTEGEVLDYGDFIKNAHANG-VKVVMATDLLALTILKPPGELGADIVVGSA-QRFGVPMGY 365 (985)
Q Consensus 290 ~l~~-l~~~t~~V~v~~p-n~~G~v~di~~I~~~a~~~g-alliV~a~~~~lg~l~~~~~~GaDi~v~s~-k~lg~P~~~ 365 (985)
++++ ++++|++|++.+| |++|.+.|+++|+++||++| ++++|| +.++.+....|-++|+||++.|. |.|++|
T Consensus 143 ~l~~~i~~~t~~v~~~~p~nptG~~~~l~~i~~la~~~g~~~livD-~~~~~~~~~~~~~~~~div~~S~sK~~~g~--- 218 (403)
T 3cog_A 143 LLEAAITPETKLVWIETPTNPTQKVIDIEGCAHIVHKHGDIILVVD-NTFMSPYFQRPLALGADISMYSATKYMNGH--- 218 (403)
T ss_dssp HHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHTSSSCCEEEEE-CTTTCTTTCCTTTTTCSEEEEETTTTTTCS---
T ss_pred HHHHhcCcCCeEEEEECCCCCCCeeeCHHHHHHHHHHcCCCEEEEE-CCCcccccCCccccCCeEEEEcChhhccCC---
Confidence 5666 7889999999998 78999999999999999999 999995 45555554556678999999998 777543
Q ss_pred CCCcEEEEEEc-hhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcchHH
Q 001989 366 GGPHAAFLATS-QEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLK 444 (985)
Q Consensus 366 GGP~~G~l~~~-~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~ 444 (985)
||--+|+++++ +++.+.+.....+ ..++. .++.. .++ ..+.+.+.
T Consensus 219 ~~~~~G~v~~~~~~l~~~l~~~~~~------------------------~g~~~-----~~~~~-~~~----~~~l~~l~ 264 (403)
T 3cog_A 219 SDVVMGLVSVNCESLHNRLRFLQNS------------------------LGAVP-----SPIDC-YLC----NRGLKTLH 264 (403)
T ss_dssp SCCCCEEEEECCHHHHHHHHHHHHH------------------------HCCCC-----CHHHH-HHH----HHHHTTHH
T ss_pred CCCeEEEEEECcHHHHHHHHHHHHh------------------------cCCCC-----CHHHH-HHH----HhhhhHHH
Confidence 11114888885 5665554110000 00011 11111 111 11112344
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCeE--------------EcCC---CCcceEEEecCC-HHHHHHHHHHcCceeee-----
Q 001989 445 TIAQRVHGLAGTFALGLKKLGTVE--------------VQGL---PFFDTVKVKCAD-AHAIASAAYKIEMNLRV----- 501 (985)
Q Consensus 445 ~i~~~~~~~a~~l~~~L~~~g~~~--------------~~~~---~~~~~~~~~~~~-~~~v~~~L~~~GI~~~~----- 501 (985)
...++..+++..+.+.|++...++ +..+ .....+.|.+++ ..++.+.|.+.||....
T Consensus 265 ~r~~~~~~n~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~l~~~~i~~~~~s~G~ 344 (403)
T 3cog_A 265 VRMEKHFKNGMAVAQFLESNPWVEKVIYPGLPSHPQHELVKRQCTGCTGMVTFYIKGTLQHAEIFLKNLKLFTLAESLGG 344 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSCCCSEEEEEESSCHHHHHHHHHHCSSSEECSCCSS
T ss_pred HHHHHHHHHHHHHHHHHhcCCCEEEEECCCCCCCCcHHHHHhcCCCCceEEEEEecCCHHHHHHHHHhCCcceEccCCCC
Confidence 455666667777777776652122 1100 113346677665 56677777777884321
Q ss_pred -------------------------ecCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 502 -------------------------VDSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 502 -------------------------~~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
+.++.+|+|++..+++++|++|.++|..
T Consensus 345 ~~sl~~~p~~~~~~~~~~~~~~~~g~~~~~iRlSvg~e~~~d~i~~l~~al~~ 397 (403)
T 3cog_A 345 FESLAELPAIMTHASVLKNDRDVLGISDTLIRLSVGLEDEEDLLEDLDQALKA 397 (403)
T ss_dssp SSCEEECTTTTTTTTSCHHHHHHHTCCTTEEEEECCSSCHHHHHHHHHHHHHH
T ss_pred cceeeecccccccccCCHHHHHhcCCCcCeEEEEeCCCCHHHHHHHHHHHHHH
Confidence 1147899999999999999999999863
|
| >3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of cofactors, prosthetic groups, and carriers, csgid, cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus anthracis str} SCOP: c.67.1.4 PDB: 3bs8_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=1.8e-16 Score=184.23 Aligned_cols=288 Identities=17% Similarity=0.206 Sum_probs=178.7
Q ss_pred HHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEE-cCCCCcccHHHHHHCCc----------
Q 001989 634 FNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCII-PVSAHGTNPATAAMCGM---------- 702 (985)
Q Consensus 634 ~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv-~~~~Hg~~~~~a~~~G~---------- 702 (985)
..++++.++++++-....++.+||+++++.++++++.+ .++++||+ ...+||.........|.
T Consensus 95 ~~~l~~~la~~~~~~~~v~~~~~Gsea~~~ai~~a~~~------~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~ 168 (429)
T 3k28_A 95 ENKLAKLVIERVPSIEIVRMVNSGTEATMSALRLARGY------TGRNKILKFIGCYHGHGDSLLIKAGSGVATLGLPDS 168 (429)
T ss_dssp HHHHHHHHHHHSTTCSEEEEESSHHHHHHHHHHHHHHH------HTCCEEEEEETCCCCSCGGGCSSCCTTC-----CCC
T ss_pred HHHHHHHHHHhCCCCCEEEEeCChHHHHHHHHHHHHHh------hCCCEEEEECCCcCCCcHHHHHhcCCcccccCCCCc
Confidence 45778889998852233567789999998888777654 24566776 56678765443222221
Q ss_pred ---------EEEEEcCCCCCCCCHHHHHHHHHhcCCCEEEEEEEcCC-CccccccC----HHHHHHHHHHcCCEEEEEcc
Q 001989 703 ---------KIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPS-THGVYEEG----IDEICKIIHDNGGQVYMDGA 768 (985)
Q Consensus 703 ---------~vv~v~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~pn-~~G~i~~d----i~eI~~la~~~galliVD~a 768 (985)
+++.+|.+ |+++|+++++++.+++++|+++.++ +.|.+. + +++|.++|+++|++||+|++
T Consensus 169 ~~~~~~~~~~~~~~~~~-----d~~~le~~l~~~~~~~~~vi~ep~~~~~G~~~-~~~~~l~~l~~l~~~~~~~li~DEv 242 (429)
T 3k28_A 169 PGVPEGVAKNTITVAYN-----DLESVKYAFEQFGDDIACVIVEPVAGNMGVVP-PQPGFLEGLREVTEQNGALLIFDEV 242 (429)
T ss_dssp TTCCHHHHTTEEEEETT-----CHHHHHHHHHHHGGGEEEEEECSSBCTTSCBC-CCTTHHHHHHHHHHHHTCEEEEECT
T ss_pred CCCCCcccCceeecCCC-----CHHHHHHHHHhCCCCEEEEEEcCCCCCCCccc-CCHHHHHHHHHHHHHcCCEEEEecc
Confidence 23334432 8999999997554577777776543 467775 6 99999999999999999998
Q ss_pred ccccccCCCCCCc--------cCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCC
Q 001989 769 NMNAQVGLTSPGY--------IGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLG 840 (985)
Q Consensus 769 ~~~~~~~l~~pg~--------~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~ 840 (985)
|. ++ +.+. ..+|++++| |+|+ +|.++|++++++++.+.+.... + ...+
T Consensus 243 ~~----g~-~~g~~~~~~~~~~~~di~t~s--K~~~-----~G~~iG~~~~~~~~~~~~~~~~-----------~-~~~~ 298 (429)
T 3k28_A 243 MT----GF-RVAYNCGQGYYGVTPDLTCLG--KVIG-----GGLPVGAYGGKAEIMRQVAPSG-----------P-IYQA 298 (429)
T ss_dssp TT----TT-TSSTTHHHHHHTCCCSEEEEC--GGGG-----TTSCCEEEEECHHHHTTBTTTS-----------S-BCCC
T ss_pred cc----cc-ccCcchHHHHhCCCCceehhh--hhhc-----CCCCeEEEEEcHHHHhhhccCC-----------C-cccc
Confidence 83 22 2221 236887654 8884 3578899999988766553210 0 0000
Q ss_pred CCCCcchhhhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhcc---CCee--ecCCCCceeeEEEEEecCcc--
Q 001989 841 TIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKH---YPIL--FRGVNGTVAHEFIVDLRGLK-- 913 (985)
Q Consensus 841 ~i~s~~~g~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~g---~~l~--~~~~~~~~~~~~iv~~~~~~-- 913 (985)
+++.+++.+++++.+.+..+. ++..++..+++++++++|++. +... ..+. +.. +.+.+....
T Consensus 299 ---~t~~~~~~a~aaa~aal~~~~----~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~-g~~---~~~~~~~~~~~ 367 (429)
T 3k28_A 299 ---GTLSGNPLAMAAGYETLVQLT----PESYVEFERKAEMLEAGLRKAAEKHGIPHHINRA-GSM---IGIFFTDEPVI 367 (429)
T ss_dssp ---CTTTTCHHHHHHHHHHHHTCC----HHHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEE-TTE---EEEESSSSCCC
T ss_pred ---CCCCCChHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEee-ccE---EEEEEecCCcc
Confidence 111224445555566666554 344556777888888888652 2211 1111 111 223332000
Q ss_pred ------ccCCCCHHHHHHHHHHCCCccCCCCCCCCCEEEEeccCCCCHHHHHHHHccCChhHHHHhhc
Q 001989 914 ------NTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRLK 975 (985)
Q Consensus 914 ------~~~g~~~~~v~~~L~~~Gi~~~~~~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~~ 975 (985)
...+....++.+.|.++|+.+.... .+.+|++ ..+|++|+++ +++.|++++++++
T Consensus 368 ~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~---~~~~r~~--~~~t~e~i~~--~l~~l~~~l~~~~ 428 (429)
T 3k28_A 368 NYDAAKSSNLQFFAAYYREMVEQGVFLPPSQ---FEGLFLS--TVHSDADIEA--TIAAAEIAMSKLK 428 (429)
T ss_dssp SHHHHTTSCHHHHHHHHHHHHHTTEECCSST---TSCBCCC--TTCCHHHHHH--HHHHHHHHHHTCC
T ss_pred cccccccccHHHHHHHHHHHHHCCeEEecCC---CCCEEEE--CCCCHHHHHH--HHHHHHHHHHHHh
Confidence 0000113678899999999886543 2466764 5789999999 8899999887664
|
| >1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=4.4e-16 Score=178.16 Aligned_cols=285 Identities=14% Similarity=0.162 Sum_probs=190.0
Q ss_pred HHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc---
Q 001989 212 SLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL--- 288 (985)
Q Consensus 212 ~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~--- 288 (985)
...++++.+|+++|.+ ++.++.|||.+++.++.+++. ++||+|+++...|+++...++. .|++++.++.
T Consensus 40 ~~~~l~~~la~~~~~~--~~~~~~~gt~al~~~~~~~~~--~~gd~Vl~~~~~~~~~~~~~~~----~g~~~~~v~~~~~ 111 (393)
T 1mdo_A 40 KNQELEAAFCRLTGNQ--YAVAVSSATAGMHIALMALGI--GEGDEVITPSMTWVSTLNMIVL----LGANPVMVDVDRD 111 (393)
T ss_dssp HHHHHHHHHHHHHCCS--EEEEESCHHHHHHHHHHHTTC--CTTCEEEEESSSCHHHHHHHHH----TTCEEEEECBCTT
T ss_pred HHHHHHHHHHHHhCCC--cEEEecChHHHHHHHHHHcCC--CCCCEEEeCCCccHhHHHHHHH----CCCEEEEEeccCC
Confidence 4567889999999986 578889999888877766533 3889999999999999888753 5888888764
Q ss_pred ------hhhhc-cCCCEeEEEEEcCCCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCCCCCccc-ceEEEecC---c
Q 001989 289 ------KDIDY-KSGDVCGVLVQYPGTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKPPGELG-ADIVVGSA---Q 357 (985)
Q Consensus 289 ------~~l~~-l~~~t~~V~v~~pn~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~~~~~~G-aDi~v~s~---k 357 (985)
++|++ +++++++|++++ ++|.+.|+++|.++|+++|+++++| +..+.|.......+| .|+++.|. |
T Consensus 112 ~~~~d~~~l~~~l~~~~~~v~~~~--~~G~~~~~~~i~~l~~~~~~~li~D-~a~~~g~~~~~~~~~~~d~~~~S~~k~K 188 (393)
T 1mdo_A 112 TLMVTPEHIEAAITPQTKAIIPVH--YAGAPADLDAIYALGERYGIPVIED-AAHATGTSYKGRHIGARGTAIFSFHAIK 188 (393)
T ss_dssp TCCBCHHHHHHHCCTTEEEECCBC--GGGCCCCHHHHHHHHHHHTCCBCEE-CTTCTTCEETTEETTSSSEEEEECCTTS
T ss_pred cCCCCHHHHHHhcCCCceEEEEeC--CCCCcCCHHHHHHHHHHcCCeEEEE-CccccCCeECCeecCCCCeEEEeCCCCC
Confidence 34555 777899998875 6899999999999999999999995 344554322223466 89999996 3
Q ss_pred cccccCCCCCCcEEEEEEc-hhhHhcCCCc-eeeeeecCCCCcceeeeccccccccccc---ccC-CCccchhHHHHHHH
Q 001989 358 RFGVPMGYGGPHAAFLATS-QEYKRMMPGR-IVGVSIDSSGKPALRVAMQTREQHIRRD---KAT-SNICTAQALLANMA 431 (985)
Q Consensus 358 ~lg~P~~~GGP~~G~l~~~-~~~~~~lp~~-~vG~t~d~~g~~~~~l~l~tre~~irre---~at-sni~t~~~l~a~~a 431 (985)
.++ |+.+|++.++ +++.+.+... ..|...+. -.+ | +. ....+.+ .|+ .++ ..+ .+
T Consensus 189 ~l~------~~~~g~~~~~~~~~~~~l~~~~~~~~~~~~-~~~-~---~~--~~~~~~~~~~~g~~~~~---~~~---~~ 249 (393)
T 1mdo_A 189 NIT------CAEGGIVVTDNPQFADKLRSLKFHGLGVDA-WDR-Q---SG--GRAPQAEVLAPGYKYNL---PDL---NA 249 (393)
T ss_dssp SSC------SSSCEEEEESCHHHHHHHHHHTBTTEECC------------------CCEESSCCCBCCC---CHH---HH
T ss_pred ccc------cccceEEEeCCHHHHHHHHHHHhcCCcccc-hhh-h---cc--cccccccccccCccCCC---CHH---HH
Confidence 332 2245788886 6666554211 11211110 000 0 00 0001111 122 111 222 22
Q ss_pred HHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCC------CcceEEEecC----C--HHHHHHHHHHcCcee
Q 001989 432 AMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLP------FFDTVKVKCA----D--AHAIASAAYKIEMNL 499 (985)
Q Consensus 432 a~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~------~~~~~~~~~~----~--~~~v~~~L~~~GI~~ 499 (985)
++-+.. .++++++.++..++++++++.|++++ +++...+ ....+.+..+ + ..++.+.|.++||.+
T Consensus 250 a~~~~~--l~~~~~~~~~~~~~~~~l~~~L~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~l~~~gi~v 326 (393)
T 1mdo_A 250 AIALAQ--LQKLDALNARRAAIAAQYHQAMADLP-FQPLSLPSWEHIHAWHLFIIRVDEARCGITRDALMASLKTKGIGT 326 (393)
T ss_dssp HHHHHH--HHTHHHHHHHHHHHHHHHHHHHHTSS-CEECCCCSSCEECCCSCEEEECCHHHHSSCHHHHHHHHHHTTBCC
T ss_pred HHHHHH--HHHHHHHHHHHHHHHHHHHHHHhcCC-cccccCCCCCCCceeEEEEEEecccccccCHHHHHHHHHhCCCCc
Confidence 221111 24578888888999999999999988 8875321 1123555554 2 788999999999977
Q ss_pred eeec-------------------------CCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 500 RVVD-------------------------SNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 500 ~~~~-------------------------~~~lris~t~~~t~edId~li~aL~~ 529 (985)
+... ...+|++++..+|++|+++++++|.+
T Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lRi~~~~~~t~~~i~~~~~~l~~ 381 (393)
T 1mdo_A 327 GLHFRAAHTQKYYRERFPTLTLPDTEWNSERICSLPLFPDMTESDFDRVITALHQ 381 (393)
T ss_dssp BCCCCCGGGSHHHHHHSTTCCCHHHHHHHTTEEEECCCTTCCHHHHHHHHHHHHH
T ss_pred ccccCccccChhhhccCCccCChhHHHHHhCEEEecCCCCCCHHHHHHHHHHHHH
Confidence 5421 23699999999999999999999974
|
| >1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A* 1szu_A* 1szs_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=1.2e-15 Score=176.71 Aligned_cols=300 Identities=12% Similarity=0.098 Sum_probs=186.6
Q ss_pred HHHHHHHHHHHh-C-CCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEE-cCCCCcccHHHHHHCCcE-------
Q 001989 634 FNNLGEWLCTIT-G-FDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCII-PVSAHGTNPATAAMCGMK------- 703 (985)
Q Consensus 634 ~~e~~~~la~l~-G-~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv-~~~~Hg~~~~~a~~~G~~------- 703 (985)
..++++.+++++ | .+...++.++|++|++.++.+++.+. .++ +||+ ...+|+.........|.+
T Consensus 86 ~~~l~~~la~~~~~~~~~~v~~~~g~~~a~~~~~~~a~~~~-----~~~-~vi~~~p~y~~~~~~~~~~~g~~~~~~~~~ 159 (426)
T 1sff_A 86 YLELCEIMNQKVPGDFAKKTLLVTTGSEAVENAVKIARAAT-----KRS-GTIAFSGAYHGRTHYTLALTGKVNPYSAGM 159 (426)
T ss_dssp HHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHHHHHH-----TCC-EEEEETTCCCCSSHHHHHHSSCCTTTTTTS
T ss_pred HHHHHHHHHHhCCcccccEEEEeCchHHHHHHHHHHHHHhh-----CCC-eEEEECCCcCCCchHhhhhcCCcccccccc
Confidence 457888999999 5 21334666788888876666444442 234 6776 456777776666655543
Q ss_pred ------EEEEcCCC-----CCCCCHHHHHHHHHhc--CCCEEEEEEEc-CCCccccccC----HHHHHHHHHHcCCEEEE
Q 001989 704 ------IVSVGTDA-----KGNINIEELRKAAEAN--RDNLSTLMVTY-PSTHGVYEEG----IDEICKIIHDNGGQVYM 765 (985)
Q Consensus 704 ------vv~v~~d~-----~g~iD~e~L~~~i~~~--~~~t~~Vvv~~-pn~~G~i~~d----i~eI~~la~~~galliV 765 (985)
++.+|++. ++.+|+++|++++++. .+++++|+++. ++.+|.+. + +++|.++|+++|+++|+
T Consensus 160 ~~~~~~v~~v~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~v~~~p~~~ntG~~~-~~~~~l~~l~~l~~~~~~~li~ 238 (426)
T 1sff_A 160 GLMPGHVYRALYPCPLHGISEDDAIASIHRIFKNDAAPEDIAAIVIEPVQGEGGFYA-SSPAFMQRLRALCDEHGIMLIA 238 (426)
T ss_dssp CCCCSSEEEECCCBGGGTBCHHHHHHHHHHHHHHTCCGGGEEEEEECSBCTTTTSCB-CCHHHHHHHHHHHHHHTCEEEE
T ss_pred CCCCCCcEEeCCCccccccchHHHHHHHHHHHHhccCCCceEEEEEecccCCCCccc-CCHHHHHHHHHHHHHcCCEEEE
Confidence 77788753 1346899999999731 14677777743 44489665 6 99999999999999999
Q ss_pred EccccccccCCCCC---C--ccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCC
Q 001989 766 DGANMNAQVGLTSP---G--YIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLG 840 (985)
Q Consensus 766 D~a~~~~~~~l~~p---g--~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~ 840 (985)
|+++. +++-.... . ...+|+++ ++|+|+ +|.++|++++++++.+.+..... ..
T Consensus 239 De~~~-~~~~~g~~~~~~~~~~~~di~s--~sK~~~-----~GlriG~~~~~~~~~~~l~~~~~------------~~-- 296 (426)
T 1sff_A 239 DEVQS-GAGRTGTLFAMEQMGVAPDLTT--FAKSIA-----GGFPLAGVTGRAEVMDAVAPGGL------------GG-- 296 (426)
T ss_dssp ECTTT-TTTTTSSSSGGGGTTSCCSEEE--ECGGGG-----TSSCCEEEEEEHHHHTTSCTTSB------------CC--
T ss_pred echhh-ccCcccchhhhhhcCCCCCEEE--Eccccc-----CCCceEEEEEcHHHHhhhccCCc------------Cc--
Confidence 99985 33211111 1 12378774 469985 24568999999877665532110 01
Q ss_pred CCCCcchhhhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc-c--CCee-ecCCCCceeeEEEEEecCccc--
Q 001989 841 TIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK-H--YPIL-FRGVNGTVAHEFIVDLRGLKN-- 914 (985)
Q Consensus 841 ~i~s~~~g~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g--~~l~-~~~~~~~~~~~~iv~~~~~~~-- 914 (985)
..+. ++....++.+.+..+..+. ..++..+++++++++|++ + ++.. ...+.+. .+.+++...+.
T Consensus 297 ~~~~----~~~~~~a~~aal~~~~~~~---~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~---~~~~~~~~~~~~~ 366 (426)
T 1sff_A 297 TYAG----NPIACVAALEVLKVFEQEN---LLQKANDLGQKLKDGLLAIAEKHPEIGDVRGLGA---MIAIELFEDGDHN 366 (426)
T ss_dssp SSSS----CHHHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHHHHHHHHHTCTTEEEEEEETT---EEEEEEBGGGCTT
T ss_pred CCCC----CHHHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHHHHHHHHHhCCCeEEEEEEEE---EEEEEEecCcccc
Confidence 1111 2233344445555554433 345667778888888875 2 3321 1111122 13445421000
Q ss_pred -cCCCCHHHHHHHHHHCCCccCCCCCCCCCEEEEeccCCCCHHHHHHHHccCChhHHHHhhc
Q 001989 915 -TAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRLK 975 (985)
Q Consensus 915 -~~g~~~~~v~~~L~~~Gi~~~~~~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~~ 975 (985)
..+.+..++.++|.++||.+..... ..+.+||+++..++++||++ +++.|++++++++
T Consensus 367 ~~~~~~~~~l~~~l~~~gi~v~~~~~-~~~~iRi~~~~~~~~~~i~~--~~~~l~~~l~~~~ 425 (426)
T 1sff_A 367 KPDAKLTAEIVARARDKGLILLSCGP-YYNVLRILVPLTIEDAQIRQ--GLEIISQCFDEAK 425 (426)
T ss_dssp SBCHHHHHHHHHHHHHTTEECEEEST-TSCEEEECCCTTCCHHHHHH--HHHHHHHHHHHHC
T ss_pred CCChHHHHHHHHHHHHCCcEEecCCC-CCCEEEEECCccCCHHHHHH--HHHHHHHHHHHHh
Confidence 0112467899999999998754321 14899999999999999999 8889998887653
|
| >3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.70 E-value=3.8e-15 Score=169.98 Aligned_cols=275 Identities=13% Similarity=0.039 Sum_probs=188.7
Q ss_pred HHHHHHHHHHHhcC--CCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc-
Q 001989 212 SLLNFQTMIADLTG--LPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL- 288 (985)
Q Consensus 212 ~i~e~q~~ia~L~g--~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~- 288 (985)
...++.+.+++.+| .++.++.+++|+|.++++++.++ . ++||+|+++...|+++...++. .|.+++.++.
T Consensus 67 l~~~la~~l~~~~g~~~~~~~i~~~~g~~~a~~~~~~~l-~--~~gd~vl~~~~~~~~~~~~~~~----~g~~~~~~~~~ 139 (391)
T 3dzz_A 67 YYKAVADWEEIEHRARPKEDWCVFASGVVPAISAMVRQF-T--SPGDQILVQEPVYNMFYSVIEG----NGRRVISSDLI 139 (391)
T ss_dssp HHHHHHHHHHHHHSCCCCGGGEEEESCHHHHHHHHHHHH-S--CTTCEEEECSSCCHHHHHHHHH----TTCEEEECCCE
T ss_pred HHHHHHHHHHHHhCCCCCHHHEEECCCHHHHHHHHHHHh-C--CCCCeEEECCCCcHHHHHHHHH----cCCEEEEeeee
Confidence 34455677888888 56778999999998888777665 2 3889999999999998888753 5778777654
Q ss_pred ----------hhhhc-cC-CCEeEEEEEcC-CCCeee---ccHHHHHHHHHhCCcEEEEEecCccccCC-----CCCCcc
Q 001989 289 ----------KDIDY-KS-GDVCGVLVQYP-GTEGEV---LDYGDFIKNAHANGVKVVMATDLLALTIL-----KPPGEL 347 (985)
Q Consensus 289 ----------~~l~~-l~-~~t~~V~v~~p-n~~G~v---~di~~I~~~a~~~galliV~a~~~~lg~l-----~~~~~~ 347 (985)
++|++ +. +++++|++.+| |.+|.+ +++++|+++|+++|+++++|. .++.... .+...+
T Consensus 140 ~~~~~~~~d~~~l~~~l~~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De-~~~~~~~~g~~~~~~~~~ 218 (391)
T 3dzz_A 140 YENSKYSVNWADLEEKLATPSVRMMVFCNPHNPIGYAWSEEEVKRIAELCAKHQVLLISDE-IHGDLVLTDEDITPAFTV 218 (391)
T ss_dssp EETTEEECCHHHHHHHHTSTTEEEEEEESSBTTTTBCCCHHHHHHHHHHHHHTTCEEEEEC-TTTTCBCSSCCCCCGGGS
T ss_pred ecCCceeecHHHHHHHHhccCceEEEEECCCCCCCcccCHHHHHHHHHHHHHCCCEEEEec-ccccccCCCCCceehhhc
Confidence 34555 65 78999999998 789999 789999999999999999953 3332111 111233
Q ss_pred c---ce--EEEecC-ccccccCCCCCCcEEEEEEc-hhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCc
Q 001989 348 G---AD--IVVGSA-QRFGVPMGYGGPHAAFLATS-QEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNI 420 (985)
Q Consensus 348 G---aD--i~v~s~-k~lg~P~~~GGP~~G~l~~~-~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni 420 (985)
+ .| +++.|. |.++. +|..+|+++++ +++.+.+.... ++ ....+.|.
T Consensus 219 ~~~~~d~~i~~~s~sK~~g~----~G~r~G~~~~~~~~~~~~~~~~~---------------------~~--~~~~~~~~ 271 (391)
T 3dzz_A 219 DWDAKNWVVSLISPSKTFNL----AALHAACAIIPNPDLRARAEESF---------------------FL--AGIGEPNL 271 (391)
T ss_dssp CTTTGGGEEEEECSHHHHTC----TTTCCEEEECCSHHHHHHHHHHH---------------------HH--HTCSSCCT
T ss_pred CccccCcEEEEEeChhhccc----cchhheEEEECCHHHHHHHHHHH---------------------Hh--hccCCCCH
Confidence 3 56 889998 87753 34557899887 77766541000 00 00011121
Q ss_pred cchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhc-CCCeEEcCCCCcceEEEecC----CHHHHHHHHH-H
Q 001989 421 CTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKK-LGTVEVQGLPFFDTVKVKCA----DAHAIASAAY-K 494 (985)
Q Consensus 421 ~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~-~g~~~~~~~~~~~~~~~~~~----~~~~v~~~L~-~ 494 (985)
....+..+++ .. +.+.++++.++..++.+++.+.|++ ++++++..+.....+.+.++ ...++.++|. +
T Consensus 272 ---~~~~a~~~~l--~~-~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 345 (391)
T 3dzz_A 272 ---LAIPAAIAAY--EE-GHDWLRELKQVLRDNFAYAREFLAKEVPEVKVLDSNASYLAWVDISALGMNAEDFCKYLREK 345 (391)
T ss_dssp ---THHHHHHHHH--HH-CHHHHHHHHHHHHHHHHHHHHHHHHHCTTSEECCCCBSSEEEEECGGGCSCHHHHHHHHHHH
T ss_pred ---HHHHHHHHHH--hc-cHHHHHHHHHHHHHHHHHHHHHHHhhCCCcEEeccCceEEEEEehhhcCCCHHHHHHHHHHh
Confidence 2222333332 22 4556888999999999999999998 64488764321111224433 2889999995 8
Q ss_pred cCceeeee------cCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 495 IEMNLRVV------DSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 495 ~GI~~~~~------~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
+||.+... .++.+|++++ ++++||+++++.|.+
T Consensus 346 ~gi~v~~g~~~~~~~~~~iRis~~--~~~~~i~~~l~~l~~ 384 (391)
T 3dzz_A 346 TGLIISAGNGYRGNGHEFVRINLA--CPKELVIDGMQRLKQ 384 (391)
T ss_dssp HCEECEESGGGCTTGGGEEEEECC--SCHHHHHHHHHHHHH
T ss_pred CCEEEeCchhhCCCCCCEEEEEec--CCHHHHHHHHHHHHH
Confidence 89988642 1378999998 699999999998874
|
| >3lws_A Aromatic amino acid beta-eliminating lyase/threonine aldolase; structural genomics, joint center for structural genomics, JCSG; HET: LLP MSE; 2.00A {Exiguobacterium sibiricum} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.1e-16 Score=180.81 Aligned_cols=287 Identities=10% Similarity=0.071 Sum_probs=174.6
Q ss_pred HHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCC--EEEEcCCCCcccHH---HHHHCCcEEEEEc
Q 001989 634 FNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRN--VCIIPVSAHGTNPA---TAAMCGMKIVSVG 708 (985)
Q Consensus 634 ~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~--~IIv~~~~Hg~~~~---~a~~~G~~vv~v~ 708 (985)
..++++++++++|.+.. +++++|+++++.++.++.. +++ +|+++...|..... .+...|++++.++
T Consensus 49 ~~~l~~~la~~~~~~~~-i~~~~G~~a~~~al~~~~~--------~gd~~~vi~~~~~~~~~~~~~~~~~~~g~~~~~v~ 119 (357)
T 3lws_A 49 IEPFEQKFADVLGMDDA-VFFPSGTMAQQVALRIWSD--------ETDNRTVAYHPLCHLEIHEQDGLKELHPIETILVG 119 (357)
T ss_dssp HHHHHHHHHHHHTCSEE-EEESCHHHHHHHHHHHHHH--------HHTCCEEEECTTCHHHHSSTTHHHHHSSCEEEECS
T ss_pred HHHHHHHHHHHhCCCcE-EEecCcHHHHHHHHHHHhh--------cCCCcEEEecccceeeeeccchhhhccCcEEEEec
Confidence 45788999999998764 4557888877655554432 233 78887766543222 3456799998888
Q ss_pred CCCCCCCCHHHHHHHHHhcCCCEEEEEEEcCC-Cc-cccc--cCHHHHHHHHHHcCCEEEEEccccc-cccCCCCC-C--
Q 001989 709 TDAKGNINIEELRKAAEANRDNLSTLMVTYPS-TH-GVYE--EGIDEICKIIHDNGGQVYMDGANMN-AQVGLTSP-G-- 780 (985)
Q Consensus 709 ~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~pn-~~-G~i~--~di~eI~~la~~~galliVD~a~~~-~~~~l~~p-g-- 780 (985)
. +++.+|+++|+++ .++++|++++|+ ++ |.+. .++++|.++|+++|++||+|+++.. .......+ .
T Consensus 120 ~-~~~~~d~~~l~~~-----~~~~~v~~~~p~np~~G~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~ 193 (357)
T 3lws_A 120 A-ADRLMTLDEIKAL-----PDIACLLLELPQREIGGVAPAFSELETISRYCRERGIRLHLDGARLFEMLPYYEKTAAEI 193 (357)
T ss_dssp C-TTSCCCHHHHHTC-----CSCSEEEEESSBGGGTSBCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCCHHHH
T ss_pred C-CCCCcCHHHHhcC-----cCcceEEEEcccccCCceeCCHHHHHHHHHHHHHcCCEEEEECchhhhhhhhcCCChHHH
Confidence 5 5678999999876 238899999995 55 8765 1599999999999999999998741 11111111 1
Q ss_pred ccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHH
Q 001989 781 YIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYI 860 (985)
Q Consensus 781 ~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l 860 (985)
..++|+++.++||+|+ ||++|+++.++++.+.+.... .. ..++..+. .. .++++.+.+
T Consensus 194 ~~~~d~~~~s~sK~~~------~~~gg~~~~~~~~~~~~~~~~-~~-----------~~~~~~~~---~~-~~~~~~~~l 251 (357)
T 3lws_A 194 AGLFDSIYISFYKGLG------GIAGAILAGPAAFCQTARIWK-RR-----------YGGDLISL---YP-YIVSADYYY 251 (357)
T ss_dssp HTTSSEEEEESSSTTC------CSSCEEEEECHHHHHHHHHHH-HH-----------TTCCCSCC---HH-HHHHHHHHH
T ss_pred HhcCCEEEEeccccCC------CCceEEEEcCHHHHHHHHHHH-HH-----------hcCCcccc---hH-HHHHHHHHH
Confidence 1357999999999984 454489888876654432100 00 00111110 11 112222333
Q ss_pred HHhcHHHHHHHHHHHHHHHHHHHHHhhccCCeee-cCCCCceeeEEEEEecCccccCC-CCHHHHHHHHHHCCCccCCCC
Q 001989 861 AMMGSKGLTEASKIAILNANYMAKRLEKHYPILF-RGVNGTVAHEFIVDLRGLKNTAG-IEPEDVAKRLMDYGFHGPTMS 938 (985)
Q Consensus 861 ~~lg~eGl~~~~~~~~~~a~~l~~~L~~g~~l~~-~~~~~~~~~~~iv~~~~~~~~~g-~~~~~v~~~L~~~Gi~~~~~~ 938 (985)
.. ..+..++..++++++.+.|++..++.+ ..+.... -+.++++. .+ .+..++.+.|.++||.+....
T Consensus 252 ~~-----~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~--~~~~~~~~----~~~~~~~~~~~~l~~~Gi~v~~g~ 320 (357)
T 3lws_A 252 EL-----RKDRMGQYYEQAKQLAEQFNALPGVHTTPEVPVSN--MFHLHFDG----QAADISPKLEQVQEETGLGFVGYL 320 (357)
T ss_dssp HH-----HTTCHHHHHHHHHHHHHHHHTSTTEEEESSSCSSS--EEEEEEES----CHHHHHHHHHHHHHHHCEESCSCC
T ss_pred HH-----HHHHHHHHHHHHHHHHHHHHhCCCCeeccCCCcce--EEEEEecC----ChHHHHHHHHHHHHhcCeEEeccc
Confidence 32 122233456778899999987333322 1221222 23455541 00 125688899999999876543
Q ss_pred CCCC--CEEEEeccC---CCCHHHHHHHHccCChhHH
Q 001989 939 WPVP--GTLMIEPTE---SESKSWTGIVMLSSPSEKK 970 (985)
Q Consensus 939 ~p~~--~~lris~t~---~~t~eeId~~~~~~~l~~~ 970 (985)
++.+ ..+|+++.. ..+.+++++ .++.|.+.
T Consensus 321 ~~~~~~~~~r~~i~~~~~~~~~~~l~~--al~~l~~a 355 (357)
T 3lws_A 321 VDKDGYCSTEISVGDAYGELDQQTRDA--GFARLRQA 355 (357)
T ss_dssp EECSSEEEEEEEBCTTGGGSCHHHHHH--HHHHHHHH
T ss_pred ccCCCceEEEEEecchhhhcCHHHHHH--HHHHHHHh
Confidence 2213 378998874 368888888 55555544
|
| >3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5' phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A {Chlamydomonas reinhardtii} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.9e-16 Score=185.02 Aligned_cols=296 Identities=12% Similarity=0.058 Sum_probs=182.3
Q ss_pred HHHHHHHHHHh----CCCcccee-cCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcE------
Q 001989 635 NNLGEWLCTIT----GFDSFSLQ-PNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMK------ 703 (985)
Q Consensus 635 ~e~~~~la~l~----G~~~~~~~-~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~------ 703 (985)
.++++.+++++ +.+...+. .+++++++..+ . .+. .++|+|+++++.|..+...++..|.+
T Consensus 114 ~~lr~~ia~~~~~g~~~~~~~i~~t~G~~~al~~~-~---~l~-----~~gd~Vl~~~p~~~~~~~~~~~~g~~g~~~~~ 184 (449)
T 3qgu_A 114 GALREAVASTFYGHAGRAADEIFISDGSKCDIARI-Q---MMF-----GSKPTVAVQDPSYPVYVDTSVMMGMTGDHNGT 184 (449)
T ss_dssp HHHHHHHHHHHHTTTTCCGGGEEEESCHHHHHHHH-H---HHH-----CSSSCEEEEESCCTHHHHHHHHHTCSCCBCSS
T ss_pred HHHHHHHHHHHHcCCCCCHHHEEEccCHHHHHHHH-H---HHh-----CCCCEEEEcCCCChhHHHHHHHcCCccccccc
Confidence 35666777776 55554544 44555554322 2 222 36789999988888887778888988
Q ss_pred ----EEEEcCCCCC--CCCHHHHHHHHHhcCCCEEEEEEEcCC-Cccccc--cCHHHHHHHHHHcCCEEEEEccccccc-
Q 001989 704 ----IVSVGTDAKG--NINIEELRKAAEANRDNLSTLMVTYPS-THGVYE--EGIDEICKIIHDNGGQVYMDGANMNAQ- 773 (985)
Q Consensus 704 ----vv~v~~d~~g--~iD~e~L~~~i~~~~~~t~~Vvv~~pn-~~G~i~--~di~eI~~la~~~galliVD~a~~~~~- 773 (985)
++.+|+++++ ..|+++ . +++++|++++|+ ++|.+. .++++|+++|+++|+++++|++|....
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~-------~-~~~~~v~l~~p~NPtG~~~~~~~l~~l~~l~~~~~~~li~Dea~~~~~~ 256 (449)
T 3qgu_A 185 GFDGIEYMVCNPDNHFFPDLSK-------A-KRTDIIFFCSPNNPTGAAATRAQLTELVNFARKNGSILVYDAAYALYIS 256 (449)
T ss_dssp SBTTEEEEECCGGGTTCCCGGG-------C-CCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCC
T ss_pred ccceeEEEecccccCCcCChhH-------c-CCCCEEEEeCCCCCCCCcCCHHHHHHHHHHHHHCCcEEEEEcchHhhhc
Confidence 9999987543 344321 1 578899999984 699885 148899999999999999999985211
Q ss_pred cCC--CC----CCccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcch
Q 001989 774 VGL--TS----PGYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPW 847 (985)
Q Consensus 774 ~~l--~~----pg~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~ 847 (985)
.+- .. +...+.++++.|++|+|++ +|.++|++++++++.+.....+..... ......+.+.
T Consensus 257 ~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~----~G~r~G~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~----- 323 (449)
T 3qgu_A 257 NPDCPKTIYEIPGADEVAIETCSFSKYAGF----TGVRLGWTVVPKALKYANGEPVHADWN----RVMTTCFNGA----- 323 (449)
T ss_dssp CTTSCSSGGGSTTGGGTEEEEEECSGGGTC----TTCCCEEEECCTTCBCTTSCBHHHHHH----HHHHHSCCCC-----
T ss_pred CCCCCCCHhhccCCCCcEEEEecchhhcCC----ccceeEEEecCHHHHhhhhhhHHHHHH----HHhhcccCCC-----
Confidence 110 01 1123467889999999854 468899999988776530000000000 0000001111
Q ss_pred hhhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHH
Q 001989 848 GSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKR 926 (985)
Q Consensus 848 g~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~ 926 (985)
+.....++.+++...+.+.+.+..++..++++++.+.|++ ++.+.. +.+..+ +.+.++ +.+..+++++
T Consensus 324 -~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~--~~~~~~--~~~~~~------~~~~~~~~~~ 392 (449)
T 3qgu_A 324 -SNIVQAGGLACLQPEGLKEMNAMIKFYKENAQILKTTFTEMGFSVYG--GDDAPY--IWVGFP------GKPSWDVFAE 392 (449)
T ss_dssp -CHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEE--SSSSSE--EEEECT------TSCHHHHHHH
T ss_pred -CHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHCCCeeeC--CCCeeE--EEEECC------CCCHHHHHHH
Confidence 1122222333333323345667777788899999999987 555532 222222 345543 4578899988
Q ss_pred HHHC-CCccCCC-CC--CCCCEEEEeccCCCCHHHHHHHHccCChhHHHHhhc
Q 001989 927 LMDY-GFHGPTM-SW--PVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRLK 975 (985)
Q Consensus 927 L~~~-Gi~~~~~-~~--p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~~ 975 (985)
|.++ ||.+... .+ ...+++||++. .+++||++ +++.|++++++-+
T Consensus 393 l~~~~gI~v~pg~~f~~~~~~~iRis~~--~~~e~i~~--~l~~l~~~~~~~~ 441 (449)
T 3qgu_A 393 ILERCNIVTTPGSGYGPAGEGFVRASAF--GSRENILE--AVRRFKEAYGKRN 441 (449)
T ss_dssp HHHHHCEECEEGGGGCGGGTTEEEEECC--SCHHHHHH--HHHHHHHHHC---
T ss_pred HHHHCCEEEecchHhCCCCCCeEEEEec--CCHHHHHH--HHHHHHHHHHhcC
Confidence 8876 9986432 12 12589999954 59999999 7788888876544
|
| >3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target 11246C, deino radiodurans, pyridoxal phosphate, transfe PSI-2; 1.70A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.70 E-value=6.8e-16 Score=179.27 Aligned_cols=312 Identities=16% Similarity=0.174 Sum_probs=178.7
Q ss_pred HHHHHHHHHHHHHhCCCcc-ceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcC-CCCcccHHHHHHCCc-------
Q 001989 632 EMFNNLGEWLCTITGFDSF-SLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPV-SAHGTNPATAAMCGM------- 702 (985)
Q Consensus 632 ~~~~e~~~~la~l~G~~~~-~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~-~~Hg~~~~~a~~~G~------- 702 (985)
+...+++++++++++.+.. .++.++|+++++.++++++.+...+|..++++||+.+ .+|+.........+.
T Consensus 72 ~~~~~l~~~la~~~~~~~~~v~~~~gg~ea~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~ 151 (430)
T 3i4j_A 72 DVLEEYAGRLARFVGLPTFRFWAVSGGSEATESAVKLARQYHVERGEPGRFKVITRVPSYHGASLGSLAASGMGARRELY 151 (430)
T ss_dssp HHHHHHHHHHHHHTTCTTCEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTC---------------------
T ss_pred HHHHHHHHHHHHhCCCCCCEEEEeCcHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCCcCCCCcccccccCcccccccc
Confidence 3456788899999976543 4667889999988888887766566644577888744 556544333222221
Q ss_pred -------EEEEEcCCCC---CCCCHHHHHHHHHhcC-CCEEEEEEEcC-C-CccccccC----HHHHHHHHHHcCCEEEE
Q 001989 703 -------KIVSVGTDAK---GNINIEELRKAAEANR-DNLSTLMVTYP-S-THGVYEEG----IDEICKIIHDNGGQVYM 765 (985)
Q Consensus 703 -------~vv~v~~d~~---g~iD~e~L~~~i~~~~-~~t~~Vvv~~p-n-~~G~i~~d----i~eI~~la~~~galliV 765 (985)
++..+|.+.. +..|+++|+++|++.. +++++|+++.+ + +.|.+. + +++|.++|+++|+++|+
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~~vi~~p~~~~~~G~~~-~~~~~l~~l~~l~~~~~~~li~ 230 (430)
T 3i4j_A 152 TPLMRPEAWPKLPKPDPARNGAEDAEGLRALLEREGPETVAAFMAEPVVGASDAALA-PAPGYYERVRDICDEAGIIFIA 230 (430)
T ss_dssp ----CGGGSCEECCCCTTSCHHHHHTHHHHHHHHHCGGGEEEEEECSSCCGGGTTCC-CCTTHHHHHHHHHHHHTCEEEE
T ss_pred CCcCCCCCceEcCCCcccchhhHHHHHHHHHHHhcCCCCEEEEEEcCcccCcCCccc-CCHHHHHHHHHHHHHcCCEEEE
Confidence 3334454322 2347799999997533 35666665443 3 566655 4 89999999999999999
Q ss_pred EccccccccCCCCC---C---ccCCcEEEeCCcccccccCCCCC-CceEEEEEcccccCcCCCCccccCCCCCCCCCCCC
Q 001989 766 DGANMNAQVGLTSP---G---YIGADVCHLNLHKTFCIPHGGGG-PGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQP 838 (985)
Q Consensus 766 D~a~~~~~~~l~~p---g---~~g~Di~~~s~hK~l~~p~g~GG-Pg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~ 838 (985)
|+++. +++..... . ....|++++| |+|+ +| .++|++++++++.+.+.... +. .. .
T Consensus 231 DEv~~-~~~~~g~~~~~~~~~~~~~di~t~s--K~l~-----~G~~r~G~~~~~~~i~~~~~~~~-~~----~~-----~ 292 (430)
T 3i4j_A 231 DEVMS-GMGRCGSPLALSRWSGVTPDIAVLG--KGLA-----AGYAPLAGLLAAPQVYETVMGGS-GA----FM-----H 292 (430)
T ss_dssp ECTTT-TTTTTSSSSGGGGTTTCCCSEEEEC--GGGT-----TTSSCCEEEEECHHHHHHHHHTT-CB----CC-----C
T ss_pred echhh-CCCcccchhhhhhhcCCCCcEEEEc--cccc-----CCccccEEEEECHHHHHHHhccC-Cc----cc-----c
Confidence 99874 22111111 1 2236888764 8874 36 77899999887765442110 00 00 0
Q ss_pred CCCCCCcchhhhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc---cCC-eeecCCCCceeeEEEEEecCccc
Q 001989 839 LGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK---HYP-ILFRGVNGTVAHEFIVDLRGLKN 914 (985)
Q Consensus 839 ~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~---g~~-l~~~~~~~~~~~~~iv~~~~~~~ 914 (985)
... +.++++.++++.+.|..+..+.+ .++..++.++++++|++ .+. +....+.+.+ +.+.+.....
T Consensus 293 ~~t----~~~~~~~~aaa~aal~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~---~~~~~~~~~~ 362 (430)
T 3i4j_A 293 GFT----YAGHPVSVAAGLSVLDIVEREDL---TGAAKERGAQLLAGLQALQARFPQMMQVRGTGLL---LGVVLGDLAT 362 (430)
T ss_dssp CCT----TTTCHHHHHHHHHHHHHHHHTTH---HHHHHHHHHHHHHHHHHHHHHCTTEEEEEEETTE---EEEEEC----
T ss_pred cCC----CCCCHHHHHHHHHHHHHHHcccH---HHHHHHHHHHHHHHHHHHHHhCCCeEEEEEEEEE---EEEEeccccc
Confidence 001 11234445555666666544443 34555666777776654 122 2111111222 2233321000
Q ss_pred -cC---CCCHHHHHHHHHHCCCccCCCCCC----CCCEEEEeccCCCCHHHHHHHHccCChhHHHHhh
Q 001989 915 -TA---GIEPEDVAKRLMDYGFHGPTMSWP----VPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRL 974 (985)
Q Consensus 915 -~~---g~~~~~v~~~L~~~Gi~~~~~~~p----~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~ 974 (985)
.. .....++.+.|.++|+.+....++ ..+.+||+++...|+|||++ +++.|+++++++
T Consensus 363 ~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~~~~~~iRi~~~~~~t~e~i~~--~l~~l~~~l~~~ 428 (430)
T 3i4j_A 363 GQAFETPGIASRIGAAALKRGLITYPGSGAEPNGRGDHLLLGPPLSITAAEVDG--LLALLAGALEDV 428 (430)
T ss_dssp --------CHHHHHHHHHHTTEECC-----------CEEEECCCTTCCHHHHHH--HHHHHHHHHHHH
T ss_pred cCCCccHHHHHHHHHHHHhCCCEEEecccccCCCCCCEEEEECCCCCCHHHHHH--HHHHHHHHHHHh
Confidence 00 112467999999999988654211 24789999999999999999 889999888754
|
| >3d6k_A Putative aminotransferase; APC82464, corynebacterium diphthe structural genomics, PSI-2, protein structure initiative; 2.00A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.70 E-value=3.1e-16 Score=181.78 Aligned_cols=300 Identities=11% Similarity=0.080 Sum_probs=184.0
Q ss_pred HHHHHHHHHHhCCCccceecCcH-HHHHHHHHHHHHHHHHhc---CCC-----CCCEEEEcCCCCcccHHHHHHCCcEEE
Q 001989 635 NNLGEWLCTITGFDSFSLQPNAG-AAGEYAGLMVIRAYHKAR---GDH-----HRNVCIIPVSAHGTNPATAAMCGMKIV 705 (985)
Q Consensus 635 ~e~~~~la~l~G~~~~~~~~~sG-a~a~~a~l~air~~~~~~---g~~-----~~~~IIv~~~~Hg~~~~~a~~~G~~vv 705 (985)
.++++.+++++|.+...+..++| +++.. ..++++.+. .. |.. .+++|+++++.|..+...++..|++++
T Consensus 79 ~~lr~~ia~~~~~~~~~i~~t~G~~~al~-l~~~~~~l~-~~~~~g~~~~~~~d~~~Vl~~~p~y~~~~~~~~~~g~~~~ 156 (422)
T 3d6k_A 79 ADIRELWAEALGLPADLVVAQDGSSLNIM-FDLISWSYT-WGNNDSSRPWSAEEKVKWLCPVPGYDRHFTITEHFGFEMI 156 (422)
T ss_dssp HHHHHHHHHHHTCCGGGEEECSSCHHHHH-HHHHHHHHH-HCCTTCSSCGGGSSCCEEEEEESCCHHHHHHHHHHTCEEE
T ss_pred HHHHHHHHHHhCCChhHEEEecchHHHHH-HHHHHHHhc-CcccccccccccCCCCEEEEeCCccHHHHHHHHHcCCEEE
Confidence 36778888889988766555444 44431 012222221 11 100 134799988877777677788899999
Q ss_pred EEcCCCCCCCCHHHHHHHHHhcCCCEEEEE-EEcC-CCccccccCHH---HHHHHHH-HcCCEEEEEccccc-cccC---
Q 001989 706 SVGTDAKGNINIEELRKAAEANRDNLSTLM-VTYP-STHGVYEEGID---EICKIIH-DNGGQVYMDGANMN-AQVG--- 775 (985)
Q Consensus 706 ~v~~d~~g~iD~e~L~~~i~~~~~~t~~Vv-v~~p-n~~G~i~~di~---eI~~la~-~~galliVD~a~~~-~~~~--- 775 (985)
.+|++++| +|+++|++++++ .++++|+ +.+| |++|.+. +.+ +|.++|+ ++|+++++|+++.. .+..
T Consensus 157 ~v~~~~~g-~d~~~l~~~l~~--~~~~~v~~~~~~~NPtG~~~-~~~~l~~l~~~~~~~~~~~li~De~y~~~~~~~~~~ 232 (422)
T 3d6k_A 157 NVPMTDEG-PDMGVVRELVKD--PQVKGMWTVPVFGNPTGVTF-SEQTCRELAEMSTAAPDFRIVWDNAYALHTLSDEFP 232 (422)
T ss_dssp EEEEETTE-ECHHHHHHHHTS--TTEEEEEECCSSCTTTCCCC-CHHHHHHHHHCCCSSTTCEEEEECTTTTCBSSSCCC
T ss_pred ecCCCCCC-CCHHHHHHHHhc--CCCeEEEEcCCCCCCCCCCC-CHHHHHHHHHHHhhccCCEEEEECCccccccCCCCC
Confidence 99997766 999999999972 3788888 5677 4699987 555 7888888 89999999999852 1211
Q ss_pred -CCC-------CCccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcch
Q 001989 776 -LTS-------PGYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPW 847 (985)
Q Consensus 776 -l~~-------pg~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~ 847 (985)
... ++..+.++++.|++|+ +. .|.++|++++++++.+.+.... . ..+.+. +
T Consensus 233 ~~~~~~~~~~~~~~~~~~i~~~S~SK~-~~----~GlriG~~~~~~~l~~~l~~~~-~-----------~~~~~~--~-- 291 (422)
T 3d6k_A 233 IVHNVIEFAQAAGNPNRFWFMSSTSKI-TH----AGSGVSFFASSKENIEWYASHA-N-----------VRGIGP--N-- 291 (422)
T ss_dssp CCCCHHHHHHHTTCTTCEEEEEESTTT-SC----TTSSCEEEECCHHHHHHHHHHH-H-----------HHCSCC--C--
T ss_pred CCcChhhHhhccCCCCcEEEEcChhhh-cC----cccceEEEEeCHHHHHHHHHHH-H-----------hhcCCC--C--
Confidence 001 1123457888899997 43 3677999999877655442110 0 000111 1
Q ss_pred hhhHHHHHHHHHHHHhc--HHHHHHHHHHHHHHHHHHHHHhhcc---CC-eeecCCCCceeeEEEEEecCccccCCCCHH
Q 001989 848 GSALILPISYTYIAMMG--SKGLTEASKIAILNANYMAKRLEKH---YP-ILFRGVNGTVAHEFIVDLRGLKNTAGIEPE 921 (985)
Q Consensus 848 g~~~~~~~a~a~l~~lg--~eGl~~~~~~~~~~a~~l~~~L~~g---~~-l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~ 921 (985)
.....++.+++...+ .+-+++..+...++.+++.+.|.+. .+ +.+..+.+..+ +.++++ +.+..
T Consensus 292 --~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~l~~~~~~~~~~p~~g~~--~~~~~~------~~~~~ 361 (422)
T 3d6k_A 292 --KLNQLAHAQFFGDVAGLKAHMLKHAASLAPKFERVLEILDSRLSEYGVAKWTSPTGGYF--ISVDVV------PGTAS 361 (422)
T ss_dssp --HHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTCEEECCCSBSSC--EEEEES------TTCHH
T ss_pred --HHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCceEEeCCCcceE--EEEECC------CCCHH
Confidence 111222223332111 1223344444555667777777541 11 22222222232 345654 12577
Q ss_pred HHHHHHHHCCCccCCC--CCC-----CCCEEEEeccCCCCHHHHHHHHccCChhHHHHhh
Q 001989 922 DVAKRLMDYGFHGPTM--SWP-----VPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRL 974 (985)
Q Consensus 922 ~v~~~L~~~Gi~~~~~--~~p-----~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~ 974 (985)
++.+.|.++||.+... .++ ..+++||+++. .+++|+++ +++.|+++++++
T Consensus 362 ~~~~~l~~~gV~v~~~g~~f~~~~~~~~~~iRis~~~-~~~e~i~~--~~~~l~~~l~~~ 418 (422)
T 3d6k_A 362 RVVELAKEAGIALTGAGSSFPLHNDPNNENIRLAPSL-PPVAELEV--AMDGFATCVLMA 418 (422)
T ss_dssp HHHHHHHHTTEECCCTTTTSGGGCCTTSCEEEECCSS-SCHHHHHH--HHHHHHHHHHHH
T ss_pred HHHHHHHHCCeEEEcCccccCCCCCCCCCeEEEecCC-CCHHHHHH--HHHHHHHHHHHH
Confidence 8889999999997542 232 24799999988 89999999 788888888765
|
| >2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics, NPPSFA, national project on prote structural and functional analyses; HET: PLP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.7e-15 Score=172.07 Aligned_cols=271 Identities=12% Similarity=0.093 Sum_probs=181.3
Q ss_pred HHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhh-hh--cCCC-CEEEEcCCCChhHHHHHHHhhcC----CCeE--
Q 001989 213 LLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNN-IQ--KGKK-KTFIIASNCHPQTIDICITRADG----FDIK-- 282 (985)
Q Consensus 213 i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~-~~--~~~g-~~Vlv~~~~H~s~~~~~~~~a~~----~gi~-- 282 (985)
..++++.+|+++|++ .++.+++|+|.++++++.+.+ +. .++| |+|++++..|+.+...+...... .|..
T Consensus 72 ~~~l~~~la~~~g~~-~~v~~~~g~t~a~~~~~~~~~~~~~~~~~g~~~vl~~~~~y~~~~~~~~~~~~~~~~~~~~~~~ 150 (375)
T 2eh6_A 72 QEELAHKLVKHFWTE-GKVFFANSGTESVEAAIKLARKYWRDKGKNKWKFISFENSFHGRTYGSLSATGQPKFHKGFEPL 150 (375)
T ss_dssp HHHHHHHHHHTSSSC-EEEEEESSHHHHHHHHHHHHHHHHHHTTCCCCEEEEEBTCCCCSSHHHHHHCBCGGGTTTTCSC
T ss_pred HHHHHHHHHhhcCCC-CeEEEeCchHHHHHHHHHHHHHHhccCCCCCCEEEEECCCcCCCchhhhhhcCCccccCCCCCC
Confidence 346789999999984 678899999988887765421 21 0256 89999987765544433322110 1222
Q ss_pred ---EEEe---Cchhhhc-cCCCEeEEEEEcC-CCCeeecc----HHHHHHHHHhCCcEEEEEecCcc-ccCCCC---CCc
Q 001989 283 ---VVVS---DLKDIDY-KSGDVCGVLVQYP-GTEGEVLD----YGDFIKNAHANGVKVVMATDLLA-LTILKP---PGE 346 (985)
Q Consensus 283 ---v~~v---~~~~l~~-l~~~t~~V~v~~p-n~~G~v~d----i~~I~~~a~~~galliV~a~~~~-lg~l~~---~~~ 346 (985)
+..+ |+++|++ +++++++|++++| |.+|.+.| +++|.++|+++|+++++|. ..+ ++.... ...
T Consensus 151 ~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~~~tG~~~~~~~~l~~i~~~~~~~~~~li~De-~~~~~~~~~~~~~~~~ 229 (375)
T 2eh6_A 151 VPGFSYAKLNDIDSVYKLLDEETAGIIIEVIQGEGGVNEASEDFLSKLQEICKEKDVLLIIDE-VQTGIGRTGEFYAYQH 229 (375)
T ss_dssp CSSEEEECTTCHHHHHTTCCTTEEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEEC-TTTTTTTTSSSSGGGG
T ss_pred CCCceeCCCchHHHHHHHhcCCeEEEEEeCccCCCCCcCCCHHHHHHHHHHHHHhCCEEEEec-cccCCCCCCcchhhhh
Confidence 4443 5567777 7889999999776 67899988 9999999999999999953 333 443221 235
Q ss_pred cc--ceEEEecCccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchh
Q 001989 347 LG--ADIVVGSAQRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQ 424 (985)
Q Consensus 347 ~G--aDi~v~s~k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~ 424 (985)
+| +|+++.| |+|+. |.++|++++++++.+.+.....+ .| .+++.
T Consensus 230 ~~~~~d~~s~S-K~~~~-----g~~~G~~~~~~~~~~~~~~~~~~--------------------------~~--~~~~~ 275 (375)
T 2eh6_A 230 FNLKPDVIALA-KGLGG-----GVPIGAILAREEVAQSFTPGSHG--------------------------ST--FGGNP 275 (375)
T ss_dssp GTCCCSEEEEC-GGGGT-----TSCCEEEEEEHHHHTTCCTTSCC--------------------------CS--STTCH
T ss_pred cCCCCCEEEEc-ccccC-----CCCeEEEEEcHHHHhhhcCCCCC--------------------------CC--CCCCH
Confidence 67 8988666 88852 35678999998887766321110 01 11111
Q ss_pred H-HHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCCCcceEEEecCC-HHHHHHHHHHcCceeeee
Q 001989 425 A-LLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDTVKVKCAD-AHAIASAAYKIEMNLRVV 502 (985)
Q Consensus 425 ~-l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~-~~~v~~~L~~~GI~~~~~ 502 (985)
. ..+..++ +..+ +++.++..++.+++++.|++++ ..... +...-+.+..+. ..++.+.|.++||.+...
T Consensus 276 ~~~~~~~~~--l~~~-----~~~~~~~~~~~~~l~~~L~~~~-~~~~~-~~g~~~~~~~~~~~~~~~~~l~~~gi~~~~~ 346 (375)
T 2eh6_A 276 LACRAGTVV--VDEV-----EKLLPHVREVGNYFKEKLKELG-KGKVK-GRGLMLGLELERECKDYVLKALEKGLLINCT 346 (375)
T ss_dssp HHHHHHHHH--HHHH-----HHHHHHHHHHHHHHHHHHHHTT-SSEEE-EETTEEEEECSSCCHHHHHHHHHTTEECEEE
T ss_pred HHHHHHHHH--HHHH-----HHHHHHHHHHHHHHHHHHHHHh-cCCce-EEEEEEEEEEcCcHHHHHHHHHHCCCEEecC
Confidence 1 1111122 2222 1677888889999999999886 32111 111234455554 678999999999988765
Q ss_pred cCCeEEEEeccCCCHHHHHHHHHHHh
Q 001989 503 DSNTVTASFDETTTLEDVDKLFIVFA 528 (985)
Q Consensus 503 ~~~~lris~t~~~t~edId~li~aL~ 528 (985)
.++.+|++++..+|++|+++++++|+
T Consensus 347 ~~~~iRi~~~~~~~~~~i~~~~~~l~ 372 (375)
T 2eh6_A 347 AGKVLRFLPPLIIQKEHIDRAISVLR 372 (375)
T ss_dssp TTTEEEECCCTTCCHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999999986
|
| >3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes} | Back alignment and structure |
|---|
Probab=99.70 E-value=5.1e-16 Score=180.18 Aligned_cols=293 Identities=15% Similarity=0.142 Sum_probs=184.7
Q ss_pred HHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCch---
Q 001989 213 LLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDLK--- 289 (985)
Q Consensus 213 i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~~--- 289 (985)
..++++.+|+++|.+. +.++.+|++++.+++.++ . ++||+||+++..|+++...+...++..|++++.+|.+
T Consensus 84 ~~~le~~lA~l~g~~~--~v~~~sG~~Ai~~al~al-~--~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~~~~v~~~d~~ 158 (430)
T 3ri6_A 84 VEDLEQRLKNLTGALG--VLALGSGMAAISTAILTL-A--RAGDSVVTTDRLFGHTLSLFQKTLPSFGIEVRFVDVMDSL 158 (430)
T ss_dssp HHHHHHHHHHHHTCSE--EEEESCHHHHHHHHHHHH-C--CTTCEEEEETTCCHHHHHHHHTHHHHTTCEEEEECTTCHH
T ss_pred HHHHHHHHHHHHCCCc--EEEECCHHHHHHHHHHHH-h--CCCCEEEEcCCCchhHHHHHHHHHHHcCCEEEEeCCCCHH
Confidence 3467789999999876 667788888877776655 2 3899999999999999987765556789999999764
Q ss_pred hhhc-cCCCEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCCCCCcccceEEEecC-ccccccCCCC
Q 001989 290 DIDY-KSGDVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKPPGELGADIVVGSA-QRFGVPMGYG 366 (985)
Q Consensus 290 ~l~~-l~~~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~~~~~~GaDi~v~s~-k~lg~P~~~G 366 (985)
++++ ++++|++|++++| |++|.+.|+++|+++||++|++++|| +.++.+.+..|.++|+|+++.|. |.|++| |
T Consensus 159 ~l~~ai~~~t~~v~~e~p~NptG~~~dl~~i~~la~~~g~~livD-~a~~~~~~~~~~~~g~div~~S~sK~l~g~---g 234 (430)
T 3ri6_A 159 AVEHACDETTKLLFLETISNPQLQVADLEALSKVVHAKGIPLVVD-TTMTPPYLLEAKRLGVDIEVLSSTKFISGG---G 234 (430)
T ss_dssp HHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHTTTCCEEEE-CTTSCTTTCCGGGGTCSEEEEECCCEEETT---E
T ss_pred HHHHhhCCCCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEE-CCCcccccCChHHcCCEEEEECCcccccCC---C
Confidence 4555 8889999999998 88999999999999999999999995 46677777778899999999998 877643 1
Q ss_pred CCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcchHHHH
Q 001989 367 GPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTI 446 (985)
Q Consensus 367 GP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i 446 (985)
..-+|++.++.+.....++++-... +.-|...|.... + ...++.-|. . .+++. + |+...+.+.+..+
T Consensus 235 ~~~gG~vv~~~~~~~~~~~~~~~l~-~~~g~~~~i~~~--~-~~~~~~~g~--~--~~~~~---a--~l~l~~l~~l~~r 301 (430)
T 3ri6_A 235 TSVGGVLIDHGLFEWKSLPSLAPYY-AKAGPMAFLYKA--R-KEVFQNLGP--S--LSPHN---A--YLQSLGLETMALR 301 (430)
T ss_dssp EECCEEEEECSCSCGGGSTTTHHHH-HHHGGGHHHHHH--H-HTHHHHHCC--C--CCHHH---H--HHHHHHHHHHHHH
T ss_pred CceEEEEEECChHHhhhccchhhhh-hhhchhhHHHHH--H-HHHHHhcCC--C--CCHHH---H--HHHHhhhhhHHHH
Confidence 1123566643321000011110000 000000000000 0 000111111 0 11221 1 2233344556666
Q ss_pred HHHHHHHHHHHHHHHhcCCCeEEc-CC-----CC----------cc-eEEEecCC---HHHHHHHHHHcCcee------e
Q 001989 447 AQRVHGLAGTFALGLKKLGTVEVQ-GL-----PF----------FD-TVKVKCAD---AHAIASAAYKIEMNL------R 500 (985)
Q Consensus 447 ~~~~~~~a~~l~~~L~~~g~~~~~-~~-----~~----------~~-~~~~~~~~---~~~v~~~L~~~GI~~------~ 500 (985)
.++..+++.++++.|++..+++.+ .+ |. .. .+.|.+++ +.++.+.|.-.++-+ +
T Consensus 302 ~~~~~~na~~la~~L~~~p~v~~V~~P~l~~~p~~~~~~~~~g~Gg~~lsf~l~~~~~~~~~~~~l~~~~~~~s~G~~~s 381 (430)
T 3ri6_A 302 IERSCQNAQELAHWLLSIPQVKCVNHPSLPDSPFYAIAKRQFRYAGSILTFELESKEASYRFMDALKLIRRATNIHDNKS 381 (430)
T ss_dssp HHHHHHHHHHHHHHHTTCTTCEEEECTTSTTSTTHHHHHHHCSSCCSEEEEECSSHHHHHHHHHHCSSSEECSCCSCSSC
T ss_pred HHHHHHHHHHHHHHHhCCCCccEEECCCCCCCccHHHHHHhCCCCceEEEEEECCHHHHHHHHHhCCcceecCCCCCCCc
Confidence 778889999999999988546633 21 10 22 67777765 444444444333211 0
Q ss_pred e---------------------ecCCeEEEEeccCCCHHHHHHHHHHH
Q 001989 501 V---------------------VDSNTVTASFDETTTLEDVDKLFIVF 527 (985)
Q Consensus 501 ~---------------------~~~~~lris~t~~~t~edId~li~aL 527 (985)
. +.++.||+|++.-+.++-++.|-++|
T Consensus 382 li~~p~~~~h~~~~~~~~~~~g~~~~liRlsvG~E~~~dl~~dl~~al 429 (430)
T 3ri6_A 382 LILSPYHVIYALNSHEERLKLEISPAMMRLSVGIEEIEDLKEDILQAL 429 (430)
T ss_dssp EEECTGGGC---------CGGGSCTTEEEEECCSSCHHHHHHHHHHHH
T ss_pred eeeCCcccccccCCHHHHHhcCCCCCeEEEEeccCCHHHHHHHHHHhh
Confidence 0 13578999998766666666666655
|
| >2fyf_A PSAT, phosphoserine aminotransferase; PLP-dependent enzyme, dimer, structural genomics; HET: PLP; 1.50A {Mycobacterium tuberculosis} PDB: 3vom_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=2.5e-16 Score=180.99 Aligned_cols=301 Identities=11% Similarity=0.048 Sum_probs=183.9
Q ss_pred HHHHHHHHHHHHHHHhCCCc-cc-ee-cCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCccc-HHHHHHC--CcE
Q 001989 630 YQEMFNNLGEWLCTITGFDS-FS-LQ-PNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTN-PATAAMC--GMK 703 (985)
Q Consensus 630 ~~~~~~e~~~~la~l~G~~~-~~-~~-~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~-~~~a~~~--G~~ 703 (985)
..+..+++++++++++|.+. .. ++ .++|++|+..++.++. .++ .++++...|+.. ...+... |.+
T Consensus 76 ~~~~~~~~~~~la~~~g~~~~~~i~~~t~g~t~al~~~~~~l~--------~~g-v~~v~~~~~~~~~~~~~~~~~~g~~ 146 (398)
T 2fyf_A 76 VKNLVGRVRSGLAELFSLPDGYEVILGNGGATAFWDAAAFGLI--------DKR-SLHLTYGEFSAKFASAVSKNPFVGE 146 (398)
T ss_dssp HHHHHHHHHHHHHHHTTCCTTCEEEEEETCHHHHHHHHHHHTC--------SSC-EEEEECSHHHHHHHHHHHHCTTSCC
T ss_pred HHHHHHHHHHHHHHHhCCCCCceEEEeCCchhHHHHHHHHHhc--------CCC-eEEEeCCHHHHHHHHHHHHhCCCCc
Confidence 34667889999999999974 23 44 6777777654444331 234 234444434311 1134455 888
Q ss_pred EEEEcCCCCCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCcc
Q 001989 704 IVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYI 782 (985)
Q Consensus 704 vv~v~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~ 782 (985)
++.++++ +|..+.. .++ ++|++|++++| |++|.+. |+++|.++ +|+++++|++|..+...+ ...
T Consensus 147 ~~~v~~~-~g~~~~~----~i~---~~~~~v~~~~~~nptG~~~-~~~~i~~~---~~~~vivD~a~~~~~~~~---~~~ 211 (398)
T 2fyf_A 147 PIIITSD-PGSAPEP----QTD---PSVDVIAWAHNETSTGVAV-AVRRPEGS---DDALVVIDATSGAGGLPV---DIA 211 (398)
T ss_dssp CEEEECC-TTCCCCC----CCC---TTCSEEEEESEETTTTEEC-CCCCCTTC---C-CEEEEECTTTTTTSCC---CGG
T ss_pred eEEEecC-CCCCCCc----ccc---CCCCEEEEeCcCCCcceec-chHHhhhh---cCCeEEEEeccccCCccc---Ccc
Confidence 8899987 3433221 144 67899999987 5799998 88988887 899999999985432211 112
Q ss_pred CCcEEEeCCcccccccCCCCCCceEEEEEcccccCcC----------CCCccccCCCCCCCCCCCCCCCCCCcchhhhHH
Q 001989 783 GADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFL----------PSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALI 852 (985)
Q Consensus 783 g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~l----------p~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~ 852 (985)
++|++++++||+|+.| +|+|++++++++.+.+ +....+.... .........++ . +...
T Consensus 212 ~~di~~~s~sK~~~~~-----gg~g~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~t-~-----~~~~ 279 (398)
T 2fyf_A 212 ETDAYYFAPQKNFASD-----GGLWLAIMSPAALSRIEAIAATGRWVPDFLSLPIAV-ENSLKNQTYNT-P-----AIAT 279 (398)
T ss_dssp GCSEEEECTTSTTCSC-----SSEEEEEECHHHHHHHHHHHHTTCCCCGGGCHHHHH-HHHTTTCCSSC-C-----CHHH
T ss_pred cCcEEEEecCcccCCC-----CceEEEEECHHHHHHhhcccccCCCCCcEEehHHHh-hhcccCCCCCC-C-----CHHH
Confidence 4899999999998532 2689999998765443 1111000000 00000000011 1 1112
Q ss_pred HHHHHHHHHHhcHHH-HHHHHHHHHHHHHHHHHHhhccCCeeecC--CCCceeeEEEEEecCccccCCCCHHHHHHHHHH
Q 001989 853 LPISYTYIAMMGSKG-LTEASKIAILNANYMAKRLEKHYPILFRG--VNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMD 929 (985)
Q Consensus 853 ~~~a~a~l~~lg~eG-l~~~~~~~~~~a~~l~~~L~~g~~l~~~~--~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~ 929 (985)
..++.+.+..+..+| +.+..++..++++++.+.|++..++.... +.......+.+.++ .+.+..++.++|.+
T Consensus 280 ~~a~~~al~~~~~~g~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~L~~ 354 (398)
T 2fyf_A 280 LALLAEQIDWLVGNGGLDWAVKRTADSSQRLYSWAQERPYTTPFVTDPGLRSQVVGTIDFV-----DDVDAGTVAKILRA 354 (398)
T ss_dssp HHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHSTTEEESCCSGGGBCSSEEEEEEC-----TTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHcCCceeccCChhhcCCcEEEEECC-----CCCCHHHHHHHHHH
Confidence 222334555555565 77888888899999999998632332221 11111113445554 25678899999999
Q ss_pred CCCccCCCCCCC-CCEEEEeccCCCCHHHHHHHHccCChhHHHHh
Q 001989 930 YGFHGPTMSWPV-PGTLMIEPTESESKSWTGIVMLSSPSEKKLHR 973 (985)
Q Consensus 930 ~Gi~~~~~~~p~-~~~lris~t~~~t~eeId~~~~~~~l~~~~~~ 973 (985)
+||.+....... .+.+||++..++|++|+++ +++.|++++++
T Consensus 355 ~gI~v~~g~~~~~~~~iRis~~~~~t~e~i~~--~~~~l~~~l~~ 397 (398)
T 2fyf_A 355 NGIVDTEPYRKLGRNQLRVAMFPAVEPDDVSA--LTECVDWVVER 397 (398)
T ss_dssp TTCBCCSCCTTTCSSEEEEECCTTSCHHHHHH--HHHHHHHHHHT
T ss_pred CCcEEecCcccCCCCEEEEEecCCCCHHHHHH--HHHHHHHHHHh
Confidence 999875321112 3789999999999999999 77888887764
|
| >3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet, transaminase, pyridox phosphate; HET: PLP; 1.40A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.2e-15 Score=178.29 Aligned_cols=312 Identities=15% Similarity=0.117 Sum_probs=189.8
Q ss_pred HHHHHHHHHHHHHhCCCcc-ceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEE-cCCCCcccHHHHHHCC--------
Q 001989 632 EMFNNLGEWLCTITGFDSF-SLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCII-PVSAHGTNPATAAMCG-------- 701 (985)
Q Consensus 632 ~~~~e~~~~la~l~G~~~~-~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv-~~~~Hg~~~~~a~~~G-------- 701 (985)
+...++++.++++++.+.. .++.++|++|++.++.+++.|...+|..++++||+ ...+|+.........|
T Consensus 93 ~~~~~l~~~la~~~~~~~~~v~~~~ggsea~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~ 172 (449)
T 3a8u_X 93 PLSFQLAEKITDLTPGNLNHVFFTDSGSECALTAVKMVRAYWRLKGQATKTKMIGRARGYHGVNIAGTSLGGVNGNRKLF 172 (449)
T ss_dssp HHHHHHHHHHHTTSSTTEEEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHCCCHHHHTTT
T ss_pred HHHHHHHHHHHHhCCCCCCEEEEcCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCChhhhhccCChhhcccc
Confidence 3456788899999876543 46678899999888887776654555435678887 5678887665544433
Q ss_pred ----cEEEEEcCCCCC-----CCC--------HHHHHHHHHhcC-CCEEEEEEEcC-CCccccccC----HHHHHHHHHH
Q 001989 702 ----MKIVSVGTDAKG-----NIN--------IEELRKAAEANR-DNLSTLMVTYP-STHGVYEEG----IDEICKIIHD 758 (985)
Q Consensus 702 ----~~vv~v~~d~~g-----~iD--------~e~L~~~i~~~~-~~t~~Vvv~~p-n~~G~i~~d----i~eI~~la~~ 758 (985)
..++.++++... .+| +++|+++|+++. +++++|+++.. +.+|++. + +++|.++|++
T Consensus 173 ~~~~~~~~~v~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~vi~~p~~~~tG~~~-~~~~~l~~l~~l~~~ 251 (449)
T 3a8u_X 173 GQPMQDVDHLPHTLLASNAYSRGMPKEGGIALADELLKLIELHDASNIAAVFVEPLAGSAGVLV-PPEGYLKRNREICNQ 251 (449)
T ss_dssp CCCSCSEEEECCCCCGGGTTCSSSCSSSHHHHHHHHHHHHHHHCGGGEEEEEECSSBTTTTCBC-CCTTHHHHHHHHHHH
T ss_pred CCCCCCCeEecCCccccCccccCChHHHHHHHHHHHHHHHHhcCCCCEEEEEEcCccCCCCCcc-CCHHHHHHHHHHHHH
Confidence 124455543211 146 999999997432 36777765533 3489876 6 9999999999
Q ss_pred cCCEEEEEccccccccCCCCC---Cc--cCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCC
Q 001989 759 NGGQVYMDGANMNAQVGLTSP---GY--IGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAP 833 (985)
Q Consensus 759 ~galliVD~a~~~~~~~l~~p---g~--~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~ 833 (985)
+|+++|+|++|. +++..... .. ..+|++++ +|+|+ +|+..+|++++++++.+.+.....+. +
T Consensus 252 ~~~~li~Dev~~-~~g~~g~~~~~~~~~~~~di~s~--sK~l~----~G~~~~G~~~~~~~~~~~l~~~~~~~--~---- 318 (449)
T 3a8u_X 252 HNILLVFDEVIT-GFGRTGSMFGADSFGVTPDLMCI--AKQVT----NGAIPMGAVIASTEIYQTFMNQPTPE--Y---- 318 (449)
T ss_dssp HTCEEEEECTTT-TTTTTSSSSHHHHHTCCCSEEEE--CGGGG----TTSSCCEEEEEEHHHHHHHHTCSSCT--T----
T ss_pred hCCEEEEecccc-CccccCcchhhhhcCCCCCEEEE--ccccc----CCCCceEEEEECHHHHHHhhccCccc--c----
Confidence 999999999983 22211111 11 23688755 49884 22145888888876654432110000 0
Q ss_pred CCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc--cCCeeec-CCCCceeeEEEEEec
Q 001989 834 EKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK--HYPILFR-GVNGTVAHEFIVDLR 910 (985)
Q Consensus 834 ~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~--g~~l~~~-~~~~~~~~~~iv~~~ 910 (985)
..... ...++.+++..++++.+.+..+..++ ..++..++.++++++|++ .+.+... ...+. .+.+.++
T Consensus 319 --~~~~~-~~~t~~~~~~~~aa~~aal~~~~~~~---~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~---~~~i~~~ 389 (449)
T 3a8u_X 319 --AVEFP-HGYTYSAHPVACAAGLAALCLLQKEN---LVQSVAEVAPHFEKALHGIKGAKNVIDIRNFGL---AGAIQIA 389 (449)
T ss_dssp --SCSSC-CCCTTTTCHHHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHHHHHTTTTSTTEEEEEEETT---EEEEEEC
T ss_pred --ccccc-ccCCCcccHHHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHHHHHHHhcCCCeEEEeeeEE---EEEEEEe
Confidence 00000 00111223444445556666554443 345667788889998876 1222110 00111 1344543
Q ss_pred CccccCCC--CHHHHHHHHHHCCCccCCCCCCCCCEEEEeccCCCCHHHHHHHHccCChhHHHHhh
Q 001989 911 GLKNTAGI--EPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRL 974 (985)
Q Consensus 911 ~~~~~~g~--~~~~v~~~L~~~Gi~~~~~~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~ 974 (985)
... ... +..++.+.|.++||.+... .+.+||+++..+|++||++ +++.|+++++++
T Consensus 390 ~~~--~~~~~~~~~~~~~l~~~Gv~v~~~----g~~iRis~~~~~t~~~i~~--~l~~l~~~l~~~ 447 (449)
T 3a8u_X 390 PRD--GDAIVRPFEAGMALWKAGFYVRFG----GDTLQFGPTFNSKPQDLDR--LFDAVGEVLNKL 447 (449)
T ss_dssp CBT--TBSSHHHHHHHHHHHHHTEECEEE----TTEEEECCCTTCCHHHHHH--HHHHHHHHHHHC
T ss_pred cCc--ccccccHHHHHHHHHHCCcEEecC----CCEEEEECCCcCCHHHHHH--HHHHHHHHHHHH
Confidence 100 001 2347999999999987543 2799999999999999999 888898887654
|
| >3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=1.1e-15 Score=185.99 Aligned_cols=301 Identities=15% Similarity=0.095 Sum_probs=194.1
Q ss_pred HHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcCCCC-
Q 001989 634 FNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAK- 712 (985)
Q Consensus 634 ~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~d~~- 712 (985)
+.++++.+|+++|.+.+.++.+++++|+.++++++. +++|+||+++..|.++...+.+.|+++++++.+.+
T Consensus 197 i~eaE~~lA~~fGa~~a~~v~nGts~An~~ai~al~--------~pGD~VLv~r~~H~S~~~~l~lsGa~pv~v~~~~~~ 268 (715)
T 3n75_A 197 HKEAEQYIARVFNADRSYMVTNGTSTANKIVGMYSA--------PAGSTILIDRNCHKSLTHLMMMSDVTPIYFRPTRNA 268 (715)
T ss_dssp HHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHHC--------CTTCEEEEESSCCHHHHHHHHHSCCEEEEECCCBCT
T ss_pred HHHHHHHHHHHhCCCCceEECcHHHHHHHHHHHHhC--------CCCCEEEECCCccHHHHHHHHHcCCEEEEEeccccc
Confidence 678999999999998876666655677766555442 47899999999998888888899999999987543
Q ss_pred ----CCC-----CHHHHHHHHHhcCCCEE---EEEEEcCCCccccccCHHHHHHHHHHcCCEEEEEccccccc--cCCC-
Q 001989 713 ----GNI-----NIEELRKAAEANRDNLS---TLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQ--VGLT- 777 (985)
Q Consensus 713 ----g~i-----D~e~L~~~i~~~~~~t~---~Vvv~~pn~~G~i~~di~eI~~la~~~galliVD~a~~~~~--~~l~- 777 (985)
+.+ |+++|+++|+++ ++++ +|++++||++|.+. |+++|+++|++++ ++||+||.... +...
T Consensus 269 ~gi~~~i~~~~~d~e~Le~~l~~~-~~~k~p~~vivt~pn~~G~v~-dl~~I~ela~~~~--livDEAH~~~~~f~~~~~ 344 (715)
T 3n75_A 269 YGILGGIPQSEFQHATIAKRVKET-PNATWPVHAVITNSTYDGLLY-NTDFIKKTLDVKS--IHFDSAWVPYTNFSPIYE 344 (715)
T ss_dssp TCCBCCCCGGGGSHHHHHHHHHHS-TTCCSCSEEEEESSCTTSEEE-CHHHHHHHCCCSE--EEEECTTCTTGGGSGGGT
T ss_pred cccccCcccccCCHHHHHHHHhhC-cCccCceEEEEECCCCCCccC-CHHHHHHHhCcCc--EEEccccccccccCCccc
Confidence 224 899999999854 3344 89999999999998 8999999998764 79999985332 1111
Q ss_pred --CCCccC--CcEE---EeCCcccccccCCCCCC-ceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhh
Q 001989 778 --SPGYIG--ADVC---HLNLHKTFCIPHGGGGP-GMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGS 849 (985)
Q Consensus 778 --~pg~~g--~Di~---~~s~hK~l~~p~g~GGP-g~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~ 849 (985)
.+...+ +|++ ++|+||+| +|| ++|++.+++......-..... ...++ +.++
T Consensus 345 ~~~al~~g~~aD~vii~~~S~hKtL------~gltqgs~i~v~~~i~~~~~~~~~~-----------~~~ST-Spsy--- 403 (715)
T 3n75_A 345 GKCGMSGGRVEGKVIYETQSTHKLL------AAFSQASMIHVKGDVNEETFNEAYM-----------MHTTT-SPHY--- 403 (715)
T ss_dssp TSSTTSSSCCTTCEEEEEECHHHHS------SCCTTCEEEEEESCCCHHHHHHHHH-----------HTSCS-SCCH---
T ss_pred cccccccCcCCCEEEEEEecccccc------cCCCCeeEEEeCchhhHHHHHHHHH-----------hhcCC-CchH---
Confidence 111223 6866 89999998 355 678888876521110000000 00001 1111
Q ss_pred hHHHHHHHHHHHHhcH-HHHHHHHHHHHHHHHHHHHHhhc--c------CCeeecC-----------C-----------C
Q 001989 850 ALILPISYTYIAMMGS-KGLTEASKIAILNANYMAKRLEK--H------YPILFRG-----------V-----------N 898 (985)
Q Consensus 850 ~~~~~~a~a~l~~lg~-eGl~~~~~~~~~~a~~l~~~L~~--g------~~l~~~~-----------~-----------~ 898 (985)
..++..-+.++.+.. +| .++.++..+++++++++|++ + +.+..+. + .
T Consensus 404 -~~~AsldaA~~~~~~~~g-~~~~~~l~~~a~~~r~~L~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~gf~~~~~ 481 (715)
T 3n75_A 404 -GIVASTETAAAMMKGNAG-KRLINGSIERAIKFRKEIKRLRTESDGWFFDVWQPDHIDTTECWPLRSDSTWHGFKNIDN 481 (715)
T ss_dssp -HHHHHHHHHHHHHSHHHH-HHHHHHHHHHHHHHHHHHHHHHHHSSSCCCEESSCSCCCSCSCEECCTTCCTTCCTTCCS
T ss_pred -HHHHHHHHHHHHHHhhcc-HHHHHHHHHHHHHHHHHHHHhhhhcccceeeccCcccccchhhhccCccccccccccccc
Confidence 111111223344432 34 34567888999999999875 2 2221100 0 0
Q ss_pred Cce-e--eEEEEEecCcc-----ccCCCCHHHHHHHHHHCCCccCCCCCCCCCEEEEeccCCCCHHHHHHHHccCChhHH
Q 001989 899 GTV-A--HEFIVDLRGLK-----NTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKSWTGIVMLSSPSEKK 970 (985)
Q Consensus 899 ~~~-~--~~~iv~~~~~~-----~~~g~~~~~v~~~L~~~Gi~~~~~~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~ 970 (985)
+.. . .-+++..+++. ...|+++..+.+.|.++||.+-... ...+.+-+|...|++++++ ++++|.++
T Consensus 482 ~~~~~Dp~Kl~i~~~~~~~~G~~~~~Gi~g~~~~~~L~~~~I~~E~~d---~~~vl~l~s~g~~~~~~~~--L~~aL~~~ 556 (715)
T 3n75_A 482 EHMYLDPIKVTLLTPGMEKDGTMSDFGIPASIVAKYLDEHGIVVEKTG---PYNLLFLFSIGIDKTKALS--LLRALTDF 556 (715)
T ss_dssp SSEEECTTEEEEECSCBCTTSCBCSSCCCHHHHHHHHHHTTCCCSEEE---TTEEEEECCTTCCHHHHHH--HHHHHHHH
T ss_pred CcccCCCeEEEEEcCCCCCCCccccCCCcHHHHHHHHHHCCCEEEecC---CCcEEEEeCCCCCHHHHHH--HHHHHHHH
Confidence 000 0 01344444321 1126788999999999999875432 3678888899999999999 66777766
Q ss_pred HHhh
Q 001989 971 LHRL 974 (985)
Q Consensus 971 ~~~~ 974 (985)
-+..
T Consensus 557 ~~~~ 560 (715)
T 3n75_A 557 KRAF 560 (715)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 5443
|
| >3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.69 E-value=2.4e-16 Score=182.27 Aligned_cols=212 Identities=17% Similarity=0.148 Sum_probs=150.4
Q ss_pred HHHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHH----HHCCcEEEEEc
Q 001989 633 MFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATA----AMCGMKIVSVG 708 (985)
Q Consensus 633 ~~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a----~~~G~~vv~v~ 708 (985)
...++++++++++|.+.. +.+++|++|+..+++++. +++|+||+++..|+...... ...|++++.+|
T Consensus 82 ~~~~l~~~la~~~g~~~~-~~~~sG~~Ai~~al~~l~--------~~Gd~Vi~~~~~y~~~~~~~~~~~~~~g~~~~~v~ 152 (414)
T 3ndn_A 82 TVSVFEERLRLIEGAPAA-FATASGMAAVFTSLGALL--------GAGDRLVAARSLFGSCFVVCSEILPRWGVQTVFVD 152 (414)
T ss_dssp HHHHHHHHHHHHHTCSEE-EEESSHHHHHHHHHHTTC--------CTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEEC
T ss_pred HHHHHHHHHHHHHCCCcE-EEECCHHHHHHHHHHHHh--------CCCCEEEEcCCccchHHHHHHHHHHHcCcEEEEeC
Confidence 456889999999998654 667788877755444331 47899999887776554443 34899999999
Q ss_pred CCCCCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCccCCcEE
Q 001989 709 TDAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIGADVC 787 (985)
Q Consensus 709 ~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~g~Di~ 787 (985)
.+ |+++|+++++ ++|++|++++| |++|.+. |+++|+++|+++|+++++|+++..+ .+..|..+|+|++
T Consensus 153 ~~-----d~~~l~~ai~---~~t~~v~le~p~NptG~~~-~l~~i~~la~~~g~~livDe~~~~~--~~~~~~~~g~div 221 (414)
T 3ndn_A 153 GD-----DLSQWERALS---VPTQAVFFETPSNPMQSLV-DIAAVTELAHAAGAKVVLDNVFATP--LLQQGFPLGVDVV 221 (414)
T ss_dssp TT-----CHHHHHHHTS---SCCSEEEEESSCTTTCCCC-CHHHHHHHHHHTTCEEEEECTTTHH--HHCCCGGGTCSEE
T ss_pred CC-----CHHHHHHhcC---CCCeEEEEECCCCCCCccc-cHHHHHHHHHHcCCEEEEECCCccc--ccCCchhcCCCeE
Confidence 75 8999999997 78999999999 5799998 8999999999999999999998532 2345667899999
Q ss_pred EeCCcccccccCCCCCCceEEEEEcccccC-cCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHH
Q 001989 788 HLNLHKTFCIPHGGGGPGMGPIGVKKHLAP-FLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSK 866 (985)
Q Consensus 788 ~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~-~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~e 866 (985)
+.|++|+|+.+ |.+.+|+++++++... .+.... . ..+...+ + ..+|..+. +.+
T Consensus 222 ~~S~sK~l~~~---G~~~~G~vv~~~~~~~~~l~~~~-~------------~~g~~~~-----~---~~a~~~~~--~l~ 275 (414)
T 3ndn_A 222 VYSGTKHIDGQ---GRVLGGAILGDREYIDGPVQKLM-R------------HTGPAMS-----A---FNAWVLLK--GLE 275 (414)
T ss_dssp EEETTTTTTCS---SCCCCEEEEECHHHHTTHHHHHH-H------------HHCCCCC-----H---HHHHHHHH--HGG
T ss_pred eccCCccccCC---CCceEEEEEECHHHHHHHHHHHH-H------------HcCCCCC-----H---HHHHHHHH--HHH
Confidence 99999998421 2155899998875443 221100 0 0011111 1 12333333 334
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccC
Q 001989 867 GLTEASKIAILNANYMAKRLEKHY 890 (985)
Q Consensus 867 Gl~~~~~~~~~~a~~l~~~L~~g~ 890 (985)
.+..+.++..++++++.+.|++..
T Consensus 276 ~l~~r~~~~~~~a~~l~~~L~~~p 299 (414)
T 3ndn_A 276 TLAIRVQHSNASAQRIAEFLNGHP 299 (414)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHTCT
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCC
Confidence 466667778889999999998643
|
| >1n8p_A Cystathionine gamma-lyase; three open alpha/beta structures; HET: PLP; 2.60A {Saccharomyces cerevisiae} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.69 E-value=1.1e-16 Score=183.92 Aligned_cols=158 Identities=15% Similarity=0.162 Sum_probs=120.8
Q ss_pred HHHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHH----HHHHCCcEEEEEc
Q 001989 633 MFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPA----TAAMCGMKIVSVG 708 (985)
Q Consensus 633 ~~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~----~a~~~G~~vv~v~ 708 (985)
..+++++.+++++|.+. .+.+++|++|+..+ ++ +. .++++||++...|+.... .++..|++++.+|
T Consensus 56 ~~~~lr~~la~~~g~~~-~i~~~sGt~a~~~a---l~-~~-----~~gd~Vi~~~~~y~~~~~~~~~~~~~~G~~v~~v~ 125 (393)
T 1n8p_A 56 NRENLERAVAALENAQY-GLAFSSGSATTATI---LQ-SL-----PQGSHAVSIGDVYGGTHRYFTKVANAHGVETSFTN 125 (393)
T ss_dssp HHHHHHHHHHHHTTCSE-EEEESCHHHHHHHH---HH-TS-----CSSCEEEEESSCCHHHHHHHHHTSTTTCSCCEEES
T ss_pred hHHHHHHHHHHHhCCCc-EEEECChHHHHHHH---HH-Hc-----CCCCEEEEeCCCchHHHHHHHHHHHHcCcEEEEeC
Confidence 35688999999999874 56677787766443 33 21 367899998876653322 2346799999999
Q ss_pred CCCCCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccCHHHHHHHHHHc----CCEEEEEccccccccCCCCCCccC
Q 001989 709 TDAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDN----GGQVYMDGANMNAQVGLTSPGYIG 783 (985)
Q Consensus 709 ~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~----galliVD~a~~~~~~~l~~pg~~g 783 (985)
++ | ++|+++++ ++|++|++++| |++|.+. |+++|+++|+++ |+++|+|++|..+. +..+..++
T Consensus 126 ~~-----d-~~l~~~i~---~~t~lv~~~~~~nptG~~~-~l~~i~~la~~~~~~~~~~livD~a~~~~~--~~~~~~~~ 193 (393)
T 1n8p_A 126 DL-----L-NDLPQLIK---ENTKLVWIETPTNPTLKVT-DIQKVADLIKKHAAGQDVILVVDNTFLSPY--ISNPLNFG 193 (393)
T ss_dssp SH-----H-HHHHHHSC---SSEEEEEECSSCTTTCCCC-CHHHHHHHHHHHTTTTTCEEEEECTTTHHH--HCCGGGGT
T ss_pred CC-----h-HHHHHhcc---cCceEEEEECCCCCcceec-CHHHHHHHHHHhCCCCCCEEEEeCCccccc--cCCHHHcC
Confidence 75 7 89999997 78999999998 4799998 899999999999 99999999986432 23566678
Q ss_pred CcEEEeCCcccccccCCCCCCc--e-EEEEEc-ccccCc
Q 001989 784 ADVCHLNLHKTFCIPHGGGGPG--M-GPIGVK-KHLAPF 818 (985)
Q Consensus 784 ~Di~~~s~hK~l~~p~g~GGPg--~-G~i~~~-~~l~~~ 818 (985)
+|+++.|+||+|+ |+| + |+++++ +++.+.
T Consensus 194 ~di~~~S~sK~~g------~~G~rigG~~~~~~~~~~~~ 226 (393)
T 1n8p_A 194 ADIVVHSATKYIN------GHSDVVLGVLATNNKPLYER 226 (393)
T ss_dssp CSEEEEETTTTTT------CSSCCCCEEEEESCHHHHHH
T ss_pred CeEEEEECccccc------CCCCceeEEEEeCCHHHHHH
Confidence 9999999999884 344 5 888885 555443
|
| >3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.69 E-value=1.1e-15 Score=176.67 Aligned_cols=271 Identities=19% Similarity=0.175 Sum_probs=185.8
Q ss_pred HHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCch---h
Q 001989 214 LNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDLK---D 290 (985)
Q Consensus 214 ~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~~---~ 290 (985)
.++++.+|+++|.+. +.++.+|++++++++.++ . ++||+||++...|+.+...++..++..|++++.+|.+ +
T Consensus 84 ~~l~~~la~~~g~~~--~~~~~sG~~Ai~~al~~l-~--~~Gd~Vi~~~~~y~~~~~~~~~~~~~~g~~~~~v~~~d~~~ 158 (414)
T 3ndn_A 84 SVFEERLRLIEGAPA--AFATASGMAAVFTSLGAL-L--GAGDRLVAARSLFGSCFVVCSEILPRWGVQTVFVDGDDLSQ 158 (414)
T ss_dssp HHHHHHHHHHHTCSE--EEEESSHHHHHHHHHHTT-C--CTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECTTCHHH
T ss_pred HHHHHHHHHHHCCCc--EEEECCHHHHHHHHHHHH-h--CCCCEEEEcCCccchHHHHHHHHHHHcCcEEEEeCCCCHHH
Confidence 456789999999754 678889988877766654 2 3899999999999999888876556689999999764 4
Q ss_pred hhc-cCCCEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCCCCCcccceEEEecC-ccccccCCCCC
Q 001989 291 IDY-KSGDVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKPPGELGADIVVGSA-QRFGVPMGYGG 367 (985)
Q Consensus 291 l~~-l~~~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~~~~~~GaDi~v~s~-k~lg~P~~~GG 367 (985)
|++ ++++|++|++.+| |.+|.+.|+++|+++||++|+++++| +.++.+....+.++|+|+++.|. |.|+++ |.
T Consensus 159 l~~ai~~~t~~v~le~p~NptG~~~~l~~i~~la~~~g~~livD-e~~~~~~~~~~~~~g~div~~S~sK~l~~~---G~ 234 (414)
T 3ndn_A 159 WERALSVPTQAVFFETPSNPMQSLVDIAAVTELAHAAGAKVVLD-NVFATPLLQQGFPLGVDVVVYSGTKHIDGQ---GR 234 (414)
T ss_dssp HHHHTSSCCSEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEE-CTTTHHHHCCCGGGTCSEEEEETTTTTTCS---SC
T ss_pred HHHhcCCCCeEEEEECCCCCCCccccHHHHHHHHHHcCCEEEEE-CCCcccccCCchhcCCCeEeccCCccccCC---CC
Confidence 555 7889999999998 78999999999999999999999995 45566655567789999999998 777432 21
Q ss_pred CcEEEEEEchhhHh-cCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcchHHHH
Q 001989 368 PHAAFLATSQEYKR-MMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTI 446 (985)
Q Consensus 368 P~~G~l~~~~~~~~-~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i 446 (985)
+-+|+++++++.+. .+.. .++..|.. . .++ .+. +...+.+.+...
T Consensus 235 ~~~G~vv~~~~~~~~~l~~-------------------------~~~~~g~~-~---~~~---~a~--~~~~~l~~l~~r 280 (414)
T 3ndn_A 235 VLGGAILGDREYIDGPVQK-------------------------LMRHTGPA-M---SAF---NAW--VLLKGLETLAIR 280 (414)
T ss_dssp CCCEEEEECHHHHTTHHHH-------------------------HHHHHCCC-C---CHH---HHH--HHHHHGGGHHHH
T ss_pred ceEEEEEECHHHHHHHHHH-------------------------HHHHcCCC-C---CHH---HHH--HHHHHHHHHHHH
Confidence 33689988877654 2200 00111111 0 111 111 223344567777
Q ss_pred HHHHHHHHHHHHHHHhcCCCeEEc-CC-----C-----------CcceEEEecCC--------HHHHHHHHHHcCceee-
Q 001989 447 AQRVHGLAGTFALGLKKLGTVEVQ-GL-----P-----------FFDTVKVKCAD--------AHAIASAAYKIEMNLR- 500 (985)
Q Consensus 447 ~~~~~~~a~~l~~~L~~~g~~~~~-~~-----~-----------~~~~~~~~~~~--------~~~v~~~L~~~GI~~~- 500 (985)
.++..+++.++.+.|++..+++.+ .+ + ....+.|.+++ +.++.+.|...++.++
T Consensus 281 ~~~~~~~a~~l~~~L~~~p~v~~v~~p~l~~~p~~~~~~~~~~g~G~~l~~~l~~~~~~~~~~~~~~~~~l~~~~~~~s~ 360 (414)
T 3ndn_A 281 VQHSNASAQRIAEFLNGHPSVRWVRYPYLPSHPQYDLAKRQMSGGGTVVTFALDCPEDVAKQRAFEVLDKMRLIDISNNL 360 (414)
T ss_dssp HHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEECSCGGGHHHHHHHHHHHCSSSEECSCC
T ss_pred HHHHHHHHHHHHHHHhcCCCEeEEECCCCCCCcCHHHHHHhCCCCceEEEEEEcCCccccHHHHHHHHHhCccceEcCCC
Confidence 788889999999999987445432 11 1 12245666543 3445555544443221
Q ss_pred --------------------------eecCCeEEEEeccCCCHHHHHHHHHHH
Q 001989 501 --------------------------VVDSNTVTASFDETTTLEDVDKLFIVF 527 (985)
Q Consensus 501 --------------------------~~~~~~lris~t~~~t~edId~li~aL 527 (985)
-+.++.||+|++.-++++-++.|.++|
T Consensus 361 G~~~sl~~~p~~~~~~~~~~~~~~~~g~~~~~iRlsvG~e~~~dli~dl~~al 413 (414)
T 3ndn_A 361 GDAKSLVTHPATTTHRAMGPEGRAAIGLGDGVVRISVGLEDTDDLIADIDRAL 413 (414)
T ss_dssp SCSSCEEECGGGTTTCTTHHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHH
T ss_pred CCCCceeeCccccccccCCHHHHHhcCCCCCeEEEEeCcCCHHHHHHHHHHhh
Confidence 012578999999877777777776665
|
| >1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP; 2.35A {Escherichia coli} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.69 E-value=6.9e-15 Score=167.99 Aligned_cols=268 Identities=11% Similarity=0.023 Sum_probs=181.5
Q ss_pred HHHHHHHh----cCC--CCc-ceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc
Q 001989 216 FQTMIADL----TGL--PMS-NASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL 288 (985)
Q Consensus 216 ~q~~ia~L----~g~--~~~-~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~ 288 (985)
+++.+|++ +|. ++. ++.+++|+|.+++.++.++ . ++||+|+++...|+++...++. .|.+++.++.
T Consensus 72 l~~~la~~l~~~~g~~~~~~~~v~~~~g~~~a~~~~~~~~-~--~~gd~vl~~~p~~~~~~~~~~~----~g~~~~~v~~ 144 (386)
T 1u08_A 72 LREAIAQKTERLYGYQPDADSDITVTAGATEALYAAITAL-V--RNGDEVICFDPSYDSYAPAIAL----SGGIVKRMAL 144 (386)
T ss_dssp HHHHHHHHHHHHHSCCCCTTTTEEEESSHHHHHHHHHHHH-C--CTTCEEEEEESCCTTHHHHHHH----TTCEEEEEEC
T ss_pred HHHHHHHHHHHHhCCCCCCCCCEEEcCChHHHHHHHHHHh-C--CCCCEEEEeCCCchhHHHHHHH----cCCEEEEeec
Confidence 44455554 574 455 8999999998888777664 2 3789999999999998887653 5777776653
Q ss_pred ---------hhhhc-cCCCEeEEEEEcC-CCCeeec---cHHHHHHHHHhCCcEEEEEecCccccCC-----CCCC----
Q 001989 289 ---------KDIDY-KSGDVCGVLVQYP-GTEGEVL---DYGDFIKNAHANGVKVVMATDLLALTIL-----KPPG---- 345 (985)
Q Consensus 289 ---------~~l~~-l~~~t~~V~v~~p-n~~G~v~---di~~I~~~a~~~galliV~a~~~~lg~l-----~~~~---- 345 (985)
++|++ +++++++|++++| |.+|.+. ++++|+++|+++|+++++|. ..+.... .+..
T Consensus 145 ~~~~~~~d~~~l~~~l~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De-~~~~~~~~g~~~~~~~~~~~ 223 (386)
T 1u08_A 145 QPPHFRVDWQEFAALLSERTRLVILNTPHNPSATVWQQADFAALWQAIAGHEIFVISDE-VYEHINFSQQGHASVLAHPQ 223 (386)
T ss_dssp CTTTCCCCHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHTTSCCEEEEEC-TTTTCBCCSSCCCCGGGSHH
T ss_pred CcccCcCCHHHHHHhhcccCEEEEEeCCCCCCCccCCHHHHHHHHHHHHHcCcEEEEEc-cccccccCCCCCcChhcccC
Confidence 34556 7788999999988 7899887 47999999999999999953 3332111 0111
Q ss_pred cccceEEEecC-ccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchh
Q 001989 346 ELGADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQ 424 (985)
Q Consensus 346 ~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~ 424 (985)
.++.|++++|. |.|+.| |-.+|++++++++++.+... ++ ..+ .+.+.
T Consensus 224 ~~~~~i~~~s~sK~~~~~----G~r~G~~~~~~~~~~~l~~~-------------------------~~-~~~--~~~~~ 271 (386)
T 1u08_A 224 LRERAVAVSSFGKTYHMT----GWKVGYCVAPAPISAEIRKV-------------------------HQ-YLT--FSVNT 271 (386)
T ss_dssp HHTTEEEEEEHHHHTTCG----GGCCEEEECCHHHHHHHHHH-------------------------HH-HHT--SSCCH
T ss_pred ccCcEEEEecchhhcCCc----ccceEEEEcCHHHHHHHHHH-------------------------HH-hhc--cCCCh
Confidence 35789999998 766422 12279999988877655100 00 000 11111
Q ss_pred -HHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCCCcceEEEecC-----CHHHHHHHHH-HcCc
Q 001989 425 -ALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDTVKVKCA-----DAHAIASAAY-KIEM 497 (985)
Q Consensus 425 -~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~~~~~~~~~~~-----~~~~v~~~L~-~~GI 497 (985)
...++.++ +.. +.+.++++.++..++.+++.+.|+++| +++..+....-+.+..+ +..++.++|. ++||
T Consensus 272 ~~~~a~~~~--l~~-~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~gi 347 (386)
T 1u08_A 272 PAQLALADM--LRA-EPEHYLALPDFYRQKRDILVNALNESR-LEILPCEGTYFLLVDYSAVSTLDDVEFCQWLTQEHGV 347 (386)
T ss_dssp HHHHHHHHH--HHH-CTHHHHTHHHHHHHHHHHHHHHTTSSS-CEECCCCBSSEEEEECTTTCCSCHHHHHHHHHHHSCE
T ss_pred HHHHHHHHH--HhC-CcHHHHHHHHHHHHHHHHHHHHHHHCC-CeecCCCceEEEEEecCCCCCCCHHHHHHHHHHhCCE
Confidence 11222222 232 356788899999999999999999987 88764321122344443 2678888886 6799
Q ss_pred eeeee--------cCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 498 NLRVV--------DSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 498 ~~~~~--------~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
.+... .++.+|++++ ++++||+++++.|.+
T Consensus 348 ~v~~g~~f~~~~~~~~~iRis~~--~~~~~i~~~~~~l~~ 385 (386)
T 1u08_A 348 AAIPLSVFCADPFPHKLIRLCFA--KKESTLLAAAERLRQ 385 (386)
T ss_dssp ECEEGGGGCSSCCCSCEEEEECC--SCHHHHHHHHHHHTT
T ss_pred EEeCchHhCCCCCCCCEEEEEEc--CCHHHHHHHHHHHhh
Confidence 87532 2468999997 489999999999864
|
| >2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural genomics, NPPSFA, N project on protein structural and functional analyses; HET: PLP; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.69 E-value=3.3e-15 Score=173.00 Aligned_cols=285 Identities=16% Similarity=0.125 Sum_probs=180.4
Q ss_pred HHHHHHHHHHHhCCC-c-cceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcC-CCCcccHHHHHHCC---------
Q 001989 634 FNNLGEWLCTITGFD-S-FSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPV-SAHGTNPATAAMCG--------- 701 (985)
Q Consensus 634 ~~e~~~~la~l~G~~-~-~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~-~~Hg~~~~~a~~~G--------- 701 (985)
..++++.+++++|.+ . ..++.++|+++++.++.+++.+ ++++||+++ .+|+.........|
T Consensus 88 ~~~l~~~la~~~~~~~~~~v~~~~gg~ea~~~ai~~~~~~-------~~~~vi~~~p~yh~~~~~~~~~~~~~~~~~~~~ 160 (419)
T 2eo5_A 88 QLELAKKLVTYSPGNFQKKVFFSNSGTEAIEASIKVVKNT-------GRKYIIAFLGGFHGRTFGSISLTASKAVQRSIV 160 (419)
T ss_dssp HHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHHHTT-------SCCEEEEETTCCCCSSHHHHHHCCSCGGGGCSS
T ss_pred HHHHHHHHHHhCCCCcCCEEEEeCchHHHHHHHHHHHHHh-------hCCcEEEECCCcCCCCHhhHhhcCCcccccccc
Confidence 457788999999986 3 3466688888887666655421 267888855 67887765553322
Q ss_pred ----cEEEEEcCCCCCC----------------CCHHHHH-HHHHhcC--CCEEEEEEEcC-C-CccccccC----HHHH
Q 001989 702 ----MKIVSVGTDAKGN----------------INIEELR-KAAEANR--DNLSTLMVTYP-S-THGVYEEG----IDEI 752 (985)
Q Consensus 702 ----~~vv~v~~d~~g~----------------iD~e~L~-~~i~~~~--~~t~~Vvv~~p-n-~~G~i~~d----i~eI 752 (985)
.+++.+|.+.+.+ +|+++|+ ++++++. +++++|++ +| | ++|.+. + +++|
T Consensus 161 ~~~~~~~~~v~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~vi~-~p~~~~tG~~~-~~~~~l~~l 238 (419)
T 2eo5_A 161 GPFMPGVIHVPYPNPYRNPWHINGYENPSELVNRVIEFIEDYIFVNLVPPEEVAGIFF-EPIQGEGGYVI-PPKNFFAEL 238 (419)
T ss_dssp CCCCTTEEEECCCCSSSCTTCCCTTTCHHHHHHHHHHHHHHTHHHHTCCGGGEEEEEE-CSSBTTTTSBC-CCTTHHHHH
T ss_pred CCCCCCCEEECCCccccccccccccccchhhHHHHHHHHHHHHHhhccCCCCEEEEEE-eCccCCCCCcc-CCHHHHHHH
Confidence 2577788754322 4689999 9987421 35666665 55 3 579754 4 9999
Q ss_pred HHHHHHcCCEEEEEcccc-ccccCC-CCCC--ccCCcEEEeCCcccccccCCCCC-CceEEEEEcccccCcCCCCccccC
Q 001989 753 CKIIHDNGGQVYMDGANM-NAQVGL-TSPG--YIGADVCHLNLHKTFCIPHGGGG-PGMGPIGVKKHLAPFLPSHPVVST 827 (985)
Q Consensus 753 ~~la~~~galliVD~a~~-~~~~~l-~~pg--~~g~Di~~~s~hK~l~~p~g~GG-Pg~G~i~~~~~l~~~lp~~~~g~~ 827 (985)
.++|+++|+++|+|++|. ++..+. .... ....|++++ .|+|+ +| .++|++++++++. .+.+.. +
T Consensus 239 ~~l~~~~~~~li~DE~~~~~g~~g~~~~~~~~~~~~d~~t~--sK~~~-----~G~~riG~~~~~~~~~-~~~~~~-~-- 307 (419)
T 2eo5_A 239 QKLAKKYGILLVDDEVQMGLGRTGKLFAIENFNTVPDVITL--AKALG-----GGIMPIGATIFRKDLD-FKPGMH-S-- 307 (419)
T ss_dssp HHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEE--CGGGG-----TTTSCCEEEEEEGGGC-CC--------
T ss_pred HHHHHHcCCEEEEeccccCCccCcchhhHHhcCCCCCEEEe--ccccc-----CCccceEEEEEchHhh-cCCccc-C--
Confidence 999999999999999985 211111 0001 224688755 48874 36 6899999998876 552111 0
Q ss_pred CCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhccCCeeecCCCCceeeEEEE
Q 001989 828 GGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIV 907 (985)
Q Consensus 828 ~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~g~~l~~~~~~~~~~~~~iv 907 (985)
.+ .+. ++..++++.+++..+. +..++..++++++.++|++.+.. ..+ .+. -+.+
T Consensus 308 ----------~t--~~~----n~~~~~aa~aal~~~~-----~~~~~~~~~~~~l~~~L~~~~~~-~~~-~g~---~~~i 361 (419)
T 2eo5_A 308 ----------NT--FGG----NALACAIGSKVIDIVK-----DLLPHVNEIGKIFAEELQGLADD-VRG-IGL---AWGL 361 (419)
T ss_dssp -----------C--CCC----CHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHTTSSSE-EEE-ETT---EEEE
T ss_pred ----------CC--CCC----CHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHhhhh-eEe-eeE---EEEE
Confidence 11 111 2233344445554332 24456778889999999763111 111 122 1334
Q ss_pred EecCccccCCCCHHHHHHHHHHCCCccCCCCCCCCCEEEEeccCCCCHHHHHHHHccCChhHHHHhh
Q 001989 908 DLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRL 974 (985)
Q Consensus 908 ~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~ 974 (985)
++.+ .+.... +.+.|.++||.+.... .+++||+++..+|++|+++ +++.|+++++++
T Consensus 362 ~~~~----~~~~~~-~~~~l~~~Gv~v~~~~---~~~lRis~~~~~t~e~i~~--~l~~l~~~l~~~ 418 (419)
T 2eo5_A 362 EYNE----KKVRDR-IIGESFKRGLLLLPAG---RSAIRVIPPLVISEEEAKQ--GLDILKKVIKVV 418 (419)
T ss_dssp ECSC----HHHHHH-HHHHHHHTTEECEEET---TTEEEECCCTTCCHHHHHH--HHHHHHHHHHHC
T ss_pred EEec----CccHHH-HHHHHHHCCCEEecCC---CCEEEEECCCCCCHHHHHH--HHHHHHHHHHhc
Confidence 5420 001245 8899999999876443 4799999999999999999 888898888764
|
| >1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=7e-15 Score=166.64 Aligned_cols=264 Identities=13% Similarity=0.117 Sum_probs=184.3
Q ss_pred HHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCchh---
Q 001989 214 LNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDLKD--- 290 (985)
Q Consensus 214 ~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~~~--- 290 (985)
.++++.+|+++|.++.++.+++|+|.+++.++.++ ++|+|+++...|+.+...++. .|.+++.++.+.
T Consensus 62 ~~l~~~la~~~~~~~~~v~~~~g~~~al~~~~~~~-----~gd~vl~~~p~y~~~~~~~~~----~g~~~~~v~~~~~~~ 132 (364)
T 1lc5_A 62 FHLHQALARHHQVPASWILAGNGETESIFTVASGL-----KPRRAMIVTPGFAEYGRALAQ----SGCEIRRWSLREADG 132 (364)
T ss_dssp HHHHHHHHHHHTSCGGGEEEESSHHHHHHHHHHHH-----CCSEEEEEESCCTHHHHHHHH----TTCEEEEEECCGGGT
T ss_pred HHHHHHHHHHHCcCHHHEEECCCHHHHHHHHHHHc-----CCCeEEEeCCCcHHHHHHHHH----cCCeEEEEeCCcccc
Confidence 46788999999998888999999998887766554 459999999999998887753 578888776531
Q ss_pred ---hh---c-cCCCEeEEEEEcC-CCCeeecc---HHHHHHHHHhCCcEEEEEecCccccCC------CCCCcccceEEE
Q 001989 291 ---ID---Y-KSGDVCGVLVQYP-GTEGEVLD---YGDFIKNAHANGVKVVMATDLLALTIL------KPPGELGADIVV 353 (985)
Q Consensus 291 ---l~---~-l~~~t~~V~v~~p-n~~G~v~d---i~~I~~~a~~~galliV~a~~~~lg~l------~~~~~~GaDi~v 353 (985)
++ + +++++++|++.+| |.+|.+.| +++|+++|+++|+++++|. ..+.... .....++.|+++
T Consensus 133 ~~~l~~~~~~~~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De-~~~~~~~~~~~~~~~~~~~~~~i~~ 211 (364)
T 1lc5_A 133 WQLTDAILEALTPDLDCLFLCTPNNPTGLLPERPLLQAIADRCKSLNINLILDE-AFIDFIPHETGFIPALKDNPHIWVL 211 (364)
T ss_dssp TCCCTTHHHHCCTTCCEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEC-TTGGGSTTCCCSGGGCTTCTTEEEE
T ss_pred cchhHHHHHhccCCCCEEEEeCCCCCCCCCCCHHHHHHHHHHhhhcCcEEEEEC-cChhhccCccchhhHhccCCCEEEE
Confidence 23 2 5578899998888 67999987 9999999999999999953 3332211 112456889999
Q ss_pred ecC-ccccccCCCCCCcEEEEE-EchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHH
Q 001989 354 GSA-QRFGVPMGYGGPHAAFLA-TSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMA 431 (985)
Q Consensus 354 ~s~-k~lg~P~~~GGP~~G~l~-~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~a 431 (985)
+|. |.|+.| |-.+|+++ .++++++.+... ..+.+. ..+ +..+
T Consensus 212 ~s~sK~~~~~----G~r~G~~~~~~~~~~~~l~~~----------------------------~~~~~~---~~~-~~~~ 255 (364)
T 1lc5_A 212 RSLTKFYAIP----GLRLGYLVNSDDAAMARMRRQ----------------------------QMPWSV---NAL-AALA 255 (364)
T ss_dssp EESTTTTTCT----TTCCEEEECCCHHHHHHHHHH----------------------------SCTTCS---CHH-HHHH
T ss_pred EECchhhcCC----ccceEEEEECCHHHHHHHHHh----------------------------CCCCCC---CHH-HHHH
Confidence 997 877532 33468998 888876654100 000111 111 1112
Q ss_pred HHHHHHhC-cchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCCCcceEEEecCC-HHHHHHHHHHcCceeeee------c
Q 001989 432 AMYAVYHG-PEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDTVKVKCAD-AHAIASAAYKIEMNLRVV------D 503 (985)
Q Consensus 432 a~~l~~~g-~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~-~~~v~~~L~~~GI~~~~~------~ 503 (985)
+. ..+. .+.++++.++..++.+++.+.|++++++++... ...-+.+..++ ..++.+.|.++||.+... .
T Consensus 256 ~~--~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~-~g~~~~~~~~~~~~~l~~~l~~~gi~v~~g~~~~~~~ 332 (364)
T 1lc5_A 256 GE--VALQDSAWQQATWHWLREEGARFYQALCQLPLLTVYPG-RANYLLLRCEREDIDLQRRLLTQRILIRSCANYPGLD 332 (364)
T ss_dssp HH--HGGGCHHHHHHHHHHHHHHHHHHHHHHHTSTTEEECCC-SSSEEEEEESCTTCCHHHHHHTTTEECEECTTSTTCC
T ss_pred HH--HHHhCcHHHHHHHHHHHHHHHHHHHHHhcCCCCEECCC-CCeEEEEECCCcHHHHHHHHHHCCcEEeeCcccCCCC
Confidence 21 1221 346788888889999999999998833887632 22224455554 567888999999988642 1
Q ss_pred CCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 504 SNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 504 ~~~lris~t~~~t~edId~li~aL~~ 529 (985)
++.+|++++ +.+|+|+++++|..
T Consensus 333 ~~~iRis~~---~~~~~~~l~~~l~~ 355 (364)
T 1lc5_A 333 SRYYRVAIR---SAAQNERLLAALRN 355 (364)
T ss_dssp TTEEEEECC---CHHHHHHHHHHHHH
T ss_pred CCEEEEEeC---CHHHHHHHHHHHHH
Confidence 478999965 79999999999974
|
| >3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine, sepsecs, protein-RNA complex, alternative splicing, cytoplasm, protein biosynthesis, pyridoxal phosphate, selenium; HET: PLR SEP; 2.81A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.69 E-value=1.8e-14 Score=163.22 Aligned_cols=339 Identities=15% Similarity=0.165 Sum_probs=215.4
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhcCCCc-cceecCCCCCC-CCCcHHHHHHHH------hCCccccccCCChhh---Hhhh
Q 001989 140 KFSKFDEGLTESQMIEHMQKLASMNKV-YKSFIGMGYYN-THVPPVILRNIM------ENPAWYTQYTPYQAE---IAQG 208 (985)
Q Consensus 140 ~lp~~~~~~se~e~~~~~~~l~~~n~~-~~~~lG~g~y~-~~~p~~v~~~i~------~~~~~~t~~~pyq~e---~sqg 208 (985)
.+| ..+++|..+.-.+.+||.++.. +..-.|.|-=. ....+.|.+.-. .|++-+++-.|=.+. +.+=
T Consensus 40 ~~P--~~g~~d~~ie~~l~~la~mdsnn~~~~~g~GERE~Rv~s~lv~rrh~~~~HGiGRSGd~~~~QPKAaGssll~~l 117 (501)
T 3hl2_A 40 KCP--ENGWDESTLELFLHELAIMDSNNFLGNCGVGEREGRVASALVARRHYRFIHGIGRSGDISAVQPKAAGSSLLNKI 117 (501)
T ss_dssp CCC--SSCCCHHHHHHHHHHHHTTBGGGCSSCCCCSSCCCCCSCHHHHHHTTTCCSCBSCSSCTTCCCTTBHHHHHHHHH
T ss_pred CCC--ccCCCHHHHHHHHHHHHhhccCCCcccCCcccchHHHHHHHHHhhccCcccCCCCccccccCCCCccchHHHHHH
Confidence 567 5899999999999999987632 22223455211 346666654332 344445544444443 1111
Q ss_pred HHHHHHHHHHHHHHhcCCCCc-ceeeccchHHHHHHHHHHhhhhcC-CCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEe
Q 001989 209 RLESLLNFQTMIADLTGLPMS-NASLLDEGTAAAEAMAMCNNIQKG-KKKTFIIASNCHPQTIDICITRADGFDIKVVVS 286 (985)
Q Consensus 209 ~l~~i~e~q~~ia~L~g~~~~-~~sl~~~~ta~~ea~~~a~~~~~~-~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v 286 (985)
|-.. .-.++..+ |++.. .+.+.+|+|+++.|+.|+..-..+ ++++||+++++|.|+...+.. .|++.+++
T Consensus 118 tn~l---~ld~L~~~-G~~~~~~~flVnGsTgg~lamilaa~r~~rpg~d~VIvpRn~HKSv~kAliL----~Gl~Pv~V 189 (501)
T 3hl2_A 118 TNSL---VLDIIKLA-GVHTVANCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSMIT----AGFEPVVI 189 (501)
T ss_dssp HHHH---HHHHHHHT-TCTTCCEEEEESSCHHHHHHHHHHHHHHHCTTCCEEEEECCCCHHHHHHHHH----TTCEEEEE
T ss_pred HHHH---HHHHHHHc-CCCCCCcEEEECcHHHHHHHHHHHHcCcccCCCCEEEEecchHHHHHHHHHH----cCCeEEEE
Confidence 1111 22456666 99864 466789999999998875421111 249999999999999999864 58888887
Q ss_pred Cc-----------hhhhc-c---CCCEeEEEEEcC-CCC-eeeccHHHHHHHHHhCCcEEEEEecCccccCCC-------
Q 001989 287 DL-----------KDIDY-K---SGDVCGVLVQYP-GTE-GEVLDYGDFIKNAHANGVKVVMATDLLALTILK------- 342 (985)
Q Consensus 287 ~~-----------~~l~~-l---~~~t~~V~v~~p-n~~-G~v~di~~I~~~a~~~galliV~a~~~~lg~l~------- 342 (985)
++ +++++ | +.+..++++++| ++. |.+.||++|+++||++|++++|+ + ++|...
T Consensus 190 ~p~~d~~~~~id~e~le~aI~e~ga~~i~~V~~Ttt~y~p~~~ddI~eIaeIch~~gIpllVD-e--AhGah~~~~~~lp 266 (501)
T 3hl2_A 190 ENVLEGDELRTDLKAVEAKVQELGPDCILCIHSTTSCFAPRVPDRLEELAVICANYDIPHIVN-N--AYGVQSSKCMHLI 266 (501)
T ss_dssp CEEEETTEEEECHHHHHHHHHHHCGGGEEEEEEECSCCTTBCCCCHHHHHHHHHHHTCCEEEE-C--TTCTTCHHHHHHH
T ss_pred eeeecccccCCCHHHHHHHHHhcCCCcEEEEEecCCCCCCcccccHHHHHHHHHHcCCeEEEe-C--cchhhhhhhhhhH
Confidence 54 34554 4 223344444454 443 36699999999999999999995 3 333221
Q ss_pred -CCCccc-ceEEEecC-ccccccCCCCCCcEEEEEEch-hhHhcCCCceeeeeecCCCCcceeeecccccccccccccCC
Q 001989 343 -PPGELG-ADIVVGSA-QRFGVPMGYGGPHAAFLATSQ-EYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATS 418 (985)
Q Consensus 343 -~~~~~G-aDi~v~s~-k~lg~P~~~GGP~~G~l~~~~-~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~ats 418 (985)
..-++| ||+++.|. |.+..|.+ | |++++++ ++++++-. . | .||.
T Consensus 267 ~sA~~~GrAD~vVqS~HK~llvpIG--G---~ii~~~d~e~l~~~~~-------~------y--------------PGr~ 314 (501)
T 3hl2_A 267 QQGARVGRIDAFVQSLDKNFMVPVG--G---AIIAGFNDSFIQEISK-------M------Y--------------PGRA 314 (501)
T ss_dssp HHHHHHSCCCEEEEEHHHHHCCCSS--C---EEEEESCHHHHHHHHH-------T------S--------------CSCB
T ss_pred HHHHhcCCCcEEEecccccceeecC--c---eEEEeCCHHHHHHHHH-------h------C--------------CCCC
Confidence 112468 99999999 77777753 3 4555553 45544310 0 0 0111
Q ss_pred CccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcC----CCeEEcCCCC-cceEEEecC-------C-H
Q 001989 419 NICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKL----GTVEVQGLPF-FDTVKVKCA-------D-A 485 (985)
Q Consensus 419 ni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~----g~~~~~~~~~-~~~~~~~~~-------~-~ 485 (985)
|.++.+.+.++ +..+|.+|++++.++..++++||+++|+++ | -++++.+. .-.+.+... . .
T Consensus 315 ---S~Spsldl~~t--LL~lGr~Gy~~ll~e~~ela~~L~~~L~~la~~~g-e~ll~~~~n~is~a~tl~~~~~~~~~~~ 388 (501)
T 3hl2_A 315 ---SASPSLDVLIT--LLSLGSNGYKKLLKERKEMFSYLSNQIKKLSEAYN-ERLLHTPHNPISLAMTLKTLDEHRDKAV 388 (501)
T ss_dssp ---CSHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT-CCBCCCTTCSSEEEEECTTSCTTTSCHH
T ss_pred ---CCcHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-hhhcCCCCCceeEEEecccccccccccH
Confidence 11334333333 368899999999999999999999999985 4 45554321 113444332 1 5
Q ss_pred HHHHHHHHHcCce----eee--------------------ecCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 486 HAIASAAYKIEMN----LRV--------------------VDSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 486 ~~v~~~L~~~GI~----~~~--------------------~~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
.++...|..++|. |.. ..-..+.+......+++|||.|++.|.+
T Consensus 389 t~~gs~Lf~r~vsG~Rvv~~~~~~~i~g~~f~~~g~h~~~~~~~yl~~a~aiG~~~~~v~~~~~~l~~ 456 (501)
T 3hl2_A 389 TQLGSMLFTRQVSGARVVPLGSMQTVSGYTFRGFMSHTNNYPCAYLNAASAIGMKMQDVDLFIKRLDR 456 (501)
T ss_dssp HHHHHHHHHTTCCSCEEECTTCCEEETTEEESSTTTTSSCCSSCEEEEECCTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCcceeecCCCceEECCeeecCcccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 6788899988873 110 0124588888889999999999999875
|
| >3nyt_A Aminotransferase WBPE; PLP binding, nucleotide-sugar binding; HET: ULP; 1.30A {Pseudomonas aeruginosa} PDB: 3nys_A* 3nyu_A* 3nu8_A* 3nu7_A* 3nub_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=1.4e-15 Score=172.88 Aligned_cols=277 Identities=13% Similarity=0.144 Sum_probs=187.6
Q ss_pred HHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc----
Q 001989 213 LLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL---- 288 (985)
Q Consensus 213 i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~---- 288 (985)
+.++++.+|+++|.+ ++.++++||.++++++.+++. ++||+|+++...|+++...++. .|++++.++.
T Consensus 37 ~~~l~~~la~~~~~~--~~~~~~sGt~al~~al~~~~~--~~gd~Vi~~~~~~~~~~~~~~~----~G~~~~~~~~~~~~ 108 (367)
T 3nyt_A 37 VTELEDRLADFVGAK--YCISCANGTDALQIVQMALGV--GPGDEVITPGFTYVATAETVAL----LGAKPVYVDIDPRT 108 (367)
T ss_dssp HHHHHHHHHHHHTCS--EEEEESCHHHHHHHHHHHTTC--CTTCEEEEESSSCTHHHHHHHH----TTCEEEEECBCTTT
T ss_pred HHHHHHHHHHHhCCC--cEEEeCCHHHHHHHHHHHhCC--CCcCEEEECCCccHHHHHHHHH----cCCEEEEEecCCcc
Confidence 567889999999987 588899999888877776543 3889999999999999988753 5888888754
Q ss_pred -----hhhhc-cCCCEeEEEEEcCCCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCCCC---CcccceEEEec---C
Q 001989 289 -----KDIDY-KSGDVCGVLVQYPGTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKPP---GELGADIVVGS---A 356 (985)
Q Consensus 289 -----~~l~~-l~~~t~~V~v~~pn~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~~~---~~~GaDi~v~s---~ 356 (985)
+++++ +++++++|++. |.+|.+.|+++|.++|+++|+++++|+ ..+.|..... +.+| |+++.| .
T Consensus 109 ~~~d~~~l~~~i~~~~~~v~~~--~~~G~~~~~~~i~~la~~~~~~li~D~-a~~~g~~~~~~~~~~~~-di~~~Sf~~~ 184 (367)
T 3nyt_A 109 YNLDPQLLEAAITPRTKAIIPV--SLYGQCADFDAINAIASKYGIPVIEDA-AQSFGASYKGKRSCNLS-TVACTSFFPS 184 (367)
T ss_dssp CSBCGGGTGGGCCTTEEEECCB--CGGGCCCCHHHHHHHHHHTTCCBEEEC-TTTTTCEETTEETTSSS-SEEEEECCTT
T ss_pred CCcCHHHHHHhcCcCCcEEEee--CCccChhhHHHHHHHHHHcCCEEEEEC-ccccCCeECCeeccCCC-CEEEEECCCC
Confidence 34566 78899988844 478999999999999999999999953 4455543222 3444 999999 3
Q ss_pred ccccccCCCCCCcEEEEEEc-hhhHhcCCCc-eeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHH
Q 001989 357 QRFGVPMGYGGPHAAFLATS-QEYKRMMPGR-IVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMY 434 (985)
Q Consensus 357 k~lg~P~~~GGP~~G~l~~~-~~~~~~lp~~-~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~ 434 (985)
|.|+.+ + . +|++.++ +++.+.+... ..|.. ..|.. ...|...- ...+ .+++.
T Consensus 185 K~l~~~-g---~-gg~~~~~~~~l~~~~~~~~~~g~~------~~~~~----------~~~g~~~~--~~~~---~aa~~ 238 (367)
T 3nyt_A 185 APLGCY-G---D-GGAIFTNDDELATAIRQIARHGQD------RRYHH----------IRVGVNSR--LDTL---QAAIL 238 (367)
T ss_dssp SSSCCS-S---C-CEEEEESCHHHHHHHHHHTBTTEE------ETTEE----------CSCCCBCC--CCHH---HHHHH
T ss_pred CcCCCc-C---c-eeEEEeCCHHHHHHHHHHHhcCCC------cCcee----------eccCcCCC--ccHH---HHHHH
Confidence 776431 1 1 4677774 5565444211 11110 00100 00111110 0122 22221
Q ss_pred HHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCC-----CCcceEEEecCCHHHHHHHHHHcCceeeeec------
Q 001989 435 AVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGL-----PFFDTVKVKCADAHAIASAAYKIEMNLRVVD------ 503 (985)
Q Consensus 435 l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~-----~~~~~~~~~~~~~~~v~~~L~~~GI~~~~~~------ 503 (985)
+.. .+.++++.++..++++++++.|+++| +.+... ..+..+.+..++..++.+.|.++||.++...
T Consensus 239 ~~~--l~~~~~~~~~~~~~~~~~~~~L~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~GI~~~~~~~~~~~~ 315 (367)
T 3nyt_A 239 LPK--LEIFEEEIALRQKVAAEYDLSLKQVG-IGTPFIEVNNISVYAQYTVRMDNRESVQASLKAAGVPTAVHYPIPLNK 315 (367)
T ss_dssp HHH--HHTHHHHHHHHHHHHHHHHHHHHHTT-CCCCCCCTTEECCCSSEEEECSSHHHHHHHHHHHTCCCBCSCSSCGGG
T ss_pred HHH--HHHHHHHHHHHHHHHHHHHHHhccCC-eeccCCCCCCceeeEEEEEEeCCHHHHHHHHHHCCCceeccCCCcccc
Confidence 122 23567788888999999999999986 665421 1233456666568889999999999654211
Q ss_pred ------------------CCeEEEEeccCCCHHHHHHHHHHHhCC
Q 001989 504 ------------------SNTVTASFDETTTLEDVDKLFIVFAGG 530 (985)
Q Consensus 504 ------------------~~~lris~t~~~t~edId~li~aL~~~ 530 (985)
...++++++...|++|||++++++.+-
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~~l~lp~~~~~t~~~i~~v~~~~~~~ 360 (367)
T 3nyt_A 316 QPAVADEKAKLPVGDKAATQVMSLPMHPYLDTASIKIICAALTNL 360 (367)
T ss_dssp SGGGCCTTCCCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHC-
T ss_pred ChhhhccCCCChHHHHHHhCeEEccCCCCCCHHHHHHHHHHHHHH
Confidence 246899999999999999999999875
|
| >3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog; NP_348457.1, putative cystathionine beta-lyase involved in A resistance; HET: LLP MSE; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.69 E-value=4.6e-16 Score=179.92 Aligned_cols=259 Identities=15% Similarity=0.106 Sum_probs=171.0
Q ss_pred HHHHHHHHHHHhCCCcccee--cCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcC-CCCcccH-----------HHHHH
Q 001989 634 FNNLGEWLCTITGFDSFSLQ--PNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPV-SAHGTNP-----------ATAAM 699 (985)
Q Consensus 634 ~~e~~~~la~l~G~~~~~~~--~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~-~~Hg~~~-----------~~a~~ 699 (985)
.+++++.+++++|.+.+.++ ++||++|+.+++.++ .+++|+||+++ ..|+.+. ..++.
T Consensus 76 ~~~Le~~lA~l~g~e~alv~p~~~sGt~A~~~al~al--------l~pGD~Vl~~~~~~y~~~~~~~g~~~~~~~~~l~~ 147 (427)
T 3hvy_A 76 RDSLDRVYANIFNTESAFVRPHFVNGTHAIGAALFGN--------LRPNDTMMSICGMPYDTLHDIIGMDDSKKVGSLRE 147 (427)
T ss_dssp HHHHHHHHHHHHTCSEEEEETTCCSHHHHHHHHHHHT--------CCTTCEEEECSSSCCGGGHHHHTCCTTCCSCCTGG
T ss_pred HHHHHHHHHHHhCCCceEEeCCCCcHHHHHHHHHHHh--------cCCCCEEEEeCCCCchhHHHHhccccchhhhHHHH
Confidence 56788999999999887553 578888775554433 14789999987 6665544 22345
Q ss_pred CCcEEEEEcCCCCCCCCHHHHHHHHHhcCCCEEEEEEEc----C-CCccccccCHHHHHHHHHH--cCCEEEEEcccccc
Q 001989 700 CGMKIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTY----P-STHGVYEEGIDEICKIIHD--NGGQVYMDGANMNA 772 (985)
Q Consensus 700 ~G~~vv~v~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~----p-n~~G~i~~di~eI~~la~~--~galliVD~a~~~~ 772 (985)
.|++++.++. +++.+|+++|+++++++ ++|++|++++ | |.+|.+. |+++|+++||+ +|++++||+++..+
T Consensus 148 ~G~~~~~v~~-~~~~~d~e~l~~~i~~~-~~tklV~i~~s~gyp~nptg~v~-dl~~i~~ia~~~~~g~~livD~a~~~~ 224 (427)
T 3hvy_A 148 YGVKYKMVDL-KDGKVDINTVKEELKKD-DSIKLIHIQRSTGYGWRKSLRIA-EIAEIIKSIREVNENVIVFVDNCYGEF 224 (427)
T ss_dssp GTCEEEECCC-BTTBCCHHHHHHHHHHC-TTEEEEEEESSCCSSSSCCCCHH-HHHHHHHHHHHHCSSSEEEEECTTCTT
T ss_pred cCCEEEEecC-CCCCcCHHHHHHHhhCC-CCCEEEEEECCCCCCCCccccHH-HHHHHHHHHHHhCCCCEEEEECCcccc
Confidence 7999999998 67899999999999742 5799999999 8 4689888 89999999999 89999999998532
Q ss_pred ccCCCCCCccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHH
Q 001989 773 QVGLTSPGYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALI 852 (985)
Q Consensus 773 ~~~l~~pg~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~ 852 (985)
.. ...|..+|+|++++|+||+|+.+ |.|.+|++++++++.+.+..... ..+.+...+.....
T Consensus 225 ~~-~~~p~~~gaDiv~~S~sK~lgg~---g~~~GG~i~~~~~li~~l~~~~~-----------~~~~g~~~~~~~~~--- 286 (427)
T 3hvy_A 225 VE-EKEPTDVGADIIAGSLIKNIGGG---IATTGGYIAGKEEYVTQATFRVT-----------VPGIGGECGSTFGV--- 286 (427)
T ss_dssp TS-SSCGGGGTCSEEEEETTSGGGTT---TCCSCEEEEECHHHHHHHHHHHS-----------CTTTGGGCCCCTTC---
T ss_pred cc-CCCCcccCCeEEEECCccccccc---ccceEEEEEECHHHHHHHHHHhh-----------cCCcccccCCCHHH---
Confidence 21 23566789999999999998521 22777999999877655432100 00111000000110
Q ss_pred HHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCC
Q 001989 853 LPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYG 931 (985)
Q Consensus 853 ~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~G 931 (985)
++..+.. .+-+..+.++..+++.++++.|++ ++.+ ++++ ....+.+++.+. ++ .......+++.|....
T Consensus 287 ---a~~~~~g--l~~~~~r~~~~~~~a~~la~~L~~~g~~V-~p~~-~~~~~~li~~~~-l~--~~~~~~~f~~~l~~~~ 356 (427)
T 3hvy_A 287 ---MRSLYEG--LFMAPHVTIEAVKGAVFCARIMELAGFDV-LPKY-NDKRTDIIQAIK-FN--DEKKLIDFIKGIQTAS 356 (427)
T ss_dssp ---HHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHTTCEE-ESCT-TSCCSSSEEEEE-CS--SHHHHHHHHHHHHHTC
T ss_pred ---HHHHHHh--HhHHHHHHHHHHHHHHHHHHHHHhCCCee-cCCC-CCCCceEEEEEe-CC--CHHHHHHHHHHhcccc
Confidence 1222222 233455677888999999999987 6666 5443 221122233332 11 0123456788887754
|
| >3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate aminotransferase, colitose, perosamine, O-antigen, pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=5.4e-15 Score=169.27 Aligned_cols=296 Identities=11% Similarity=0.069 Sum_probs=186.5
Q ss_pred HHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhh----hcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeC
Q 001989 212 SLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNI----QKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSD 287 (985)
Q Consensus 212 ~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~----~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~ 287 (985)
.+.++++.+|+++|.+ +..++.+||.+++.++.+++. ..++||+|+++...|+++..+++. .|.+++.++
T Consensus 35 ~~~~l~~~la~~~~~~--~~i~~~sGt~a~~~al~~~~~~~~~~~~~g~~Vi~~~~~~~~~~~~~~~----~g~~~~~~~ 108 (390)
T 3b8x_A 35 YVKQYETQFAKTFGSK--YAVMVSSGSTANLLMIAALFFTKKPRLKKGDEIIVPAVSWSTTYYPLQQ----YGLRVKFVD 108 (390)
T ss_dssp HHHHHHHHHHHHHTCS--EEEEESCHHHHHHHHHHHTTSSSSCSCCTTCEEEEESSSCHHHHHHHHH----TTCEEEEEC
T ss_pred HHHHHHHHHHHHHCCC--cEEEECCHHHHHHHHHHHHHhhhhcCCCCcCEEEECCCCcHHHHHHHHH----cCCEEEEEe
Confidence 4567889999999987 467888888877776666520 023789999999999999998863 588888876
Q ss_pred c---------hhhhc-cCCCEeEEEEEcCCCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCCCCCcccc--eEEEec
Q 001989 288 L---------KDIDY-KSGDVCGVLVQYPGTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKPPGELGA--DIVVGS 355 (985)
Q Consensus 288 ~---------~~l~~-l~~~t~~V~v~~pn~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~~~~~~Ga--Di~v~s 355 (985)
. ++|++ ++++|++|++++ ++|...|+++|.++||++|+++++| +.++.|.......+|+ |+.+.+
T Consensus 109 ~~~~~~~~d~~~l~~~i~~~~~~v~~~~--~~g~~~~~~~i~~l~~~~~~~li~D-~a~~~g~~~~~~~~g~~~~~~~~s 185 (390)
T 3b8x_A 109 IDINTLNIDIESLKEAVTDSTKAILTVN--LLGNPNNFDEINKIIGGRDIILLED-NCESMGATFNNKCAGTFGLMGTFS 185 (390)
T ss_dssp BCTTTCSBCHHHHHHHCCTTEEEEEEEC--GGGCCCCHHHHHHHHTTSCCEEEEE-CTTCTTCEETTEETTSSSSEEEEE
T ss_pred cCccccCcCHHHHHHHhCcCCeEEEEEC--CccChhhHHHHHHHHHHcCCEEEEE-CcCcccCEECCcccccccceEEEE
Confidence 4 34555 778899999874 6788899999999999999999995 3556554434445676 555433
Q ss_pred ---CccccccCCCCCCcEEEEEEch-hhHhcCCCc-eeeeeecCCCCcceeeeccc--ccccccccccCCCccchhHHHH
Q 001989 356 ---AQRFGVPMGYGGPHAAFLATSQ-EYKRMMPGR-IVGVSIDSSGKPALRVAMQT--REQHIRRDKATSNICTAQALLA 428 (985)
Q Consensus 356 ---~k~lg~P~~~GGP~~G~l~~~~-~~~~~lp~~-~vG~t~d~~g~~~~~l~l~t--re~~irre~atsni~t~~~l~a 428 (985)
+|+++ +|.| |++++++ ++.+++... ..|+..+......+.+...+ .+...+++....|..+ ..+.+
T Consensus 186 ~~~~k~~~-----~g~g-G~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~a 258 (390)
T 3b8x_A 186 SFYSNHIA-----TMEG-GCIVTDDEEIYHILLCIRAHGWTRNLPKKNKVTGVKSDDQFEESFKFVLPGYNVRP-LEMSG 258 (390)
T ss_dssp CCTTSSSC-----SSSC-EEEEESCHHHHHHHHHHTBTTBSTTSCSEETTTEECCSCTTTSSSCBCSCCCBCCC-CHHHH
T ss_pred ccCCCCCc-----cCCc-eEEEeCCHHHHHHHHHHHhcCCCccccccccccccccccccccccceeccccccCc-CHHHH
Confidence 35553 2334 8888886 554433211 11210000000000000000 0001111111111111 11211
Q ss_pred HHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCC---CcceEEEecC---C--HHHHHHHHHHcCceee
Q 001989 429 NMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLP---FFDTVKVKCA---D--AHAIASAAYKIEMNLR 500 (985)
Q Consensus 429 ~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~---~~~~~~~~~~---~--~~~v~~~L~~~GI~~~ 500 (985)
..+ + ..+ +.++++.++..++++++.+.|+++.++++...+ .+..+.+.++ + ..++.+.|.++||.++
T Consensus 259 a~~-l--~~l--~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~L~~~gI~v~ 333 (390)
T 3b8x_A 259 AIG-I--EQL--KKLPRFISVRRKNAEYFLDKFKDHPYLDVQQETGESSWFGFSFIIKKDSGVIRKQLVENLNSAGIECR 333 (390)
T ss_dssp HHH-H--HHH--HHHHHHHHHHHHHHHHHHHHHTTCSSEEECCCCSBCCCCEEEEEECTTSCCCHHHHHHHHHHTTBCCB
T ss_pred HHH-H--HHH--HHHHHHHHHHHHHHHHHHHHhcCCCCcccCCCCCCcccEEEEEEecCcCcccHHHHHHHHHHCCCCee
Confidence 111 1 111 457788899999999999999998448886431 2233544444 2 8889999999999765
Q ss_pred eec------C-----------------------CeEEEEeccCCCHHHHHHHHHHHh
Q 001989 501 VVD------S-----------------------NTVTASFDETTTLEDVDKLFIVFA 528 (985)
Q Consensus 501 ~~~------~-----------------------~~lris~t~~~t~edId~li~aL~ 528 (985)
... . +.+|++++..+|++|||+++++|+
T Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~t~~di~~i~~~l~ 390 (390)
T 3b8x_A 334 PIVTGNFLKNTDVLKYFDYTVHNNVDNAEYLDKNGLFVGNHQIELFDEIDYLREVLK 390 (390)
T ss_dssp CSTTSSGGGCHHHHTTCEEEESSCCHHHHHHHHHEEEEECCSSCCHHHHHHHHHHTC
T ss_pred eecCCchhhcchhhhcCCCCCcCCChHHHHHhcCEEEeeCCCCCCHHHHHHHHHhhC
Confidence 311 0 259999999999999999999873
|
| >4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=7.1e-15 Score=167.71 Aligned_cols=275 Identities=11% Similarity=0.084 Sum_probs=186.1
Q ss_pred HHHHHHHHHHHHhcC--CCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc
Q 001989 211 ESLLNFQTMIADLTG--LPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL 288 (985)
Q Consensus 211 ~~i~e~q~~ia~L~g--~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~ 288 (985)
+...++++.+++++| .++.++.+++|+|.++++++.++. ++||+|+++...|+++...++. .|.+++.++.
T Consensus 71 ~~~~~l~~~l~~~~g~~~~~~~v~~~~g~~~a~~~~~~~~~---~~gd~vl~~~~~~~~~~~~~~~----~g~~~~~~~~ 143 (391)
T 4dq6_A 71 SYNESIVNWLYRRHNWKIKSEWLIYSPGVIPAISLLINELT---KANDKIMIQEPVYSPFNSVVKN----NNRELIISPL 143 (391)
T ss_dssp HHHHHHHHHHHHHHCCCCCGGGEEEESCHHHHHHHHHHHHS---CTTCEEEECSSCCTHHHHHHHH----TTCEEEECCC
T ss_pred HHHHHHHHHHHHHhCCCCcHHHeEEcCChHHHHHHHHHHhC---CCCCEEEEcCCCCHHHHHHHHH----cCCeEEeeee
Confidence 344567788899999 667789999999988887776552 3789999999999998888753 5778877654
Q ss_pred h------------hhhc-cCCCEeEEEEEcC-CCCeee---ccHHHHHHHHHhCCcEEEEEecCccccCCC-----CCCc
Q 001989 289 K------------DIDY-KSGDVCGVLVQYP-GTEGEV---LDYGDFIKNAHANGVKVVMATDLLALTILK-----PPGE 346 (985)
Q Consensus 289 ~------------~l~~-l~~~t~~V~v~~p-n~~G~v---~di~~I~~~a~~~galliV~a~~~~lg~l~-----~~~~ 346 (985)
+ ++++ +.+ +++|++.+| |.+|.+ +++++|+++|+++|+++++|. ..+..... +...
T Consensus 144 ~~~~~~~~~~d~~~l~~~l~~-~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De-~~~~~~~~g~~~~~~~~ 221 (391)
T 4dq6_A 144 QKLENGNYIMDYEDIENKIKD-VKLFILCNPHNPVGRVWTKDELKKLGDICLKHNVKIISDE-IHSDIILKKHKHIPMAS 221 (391)
T ss_dssp EECTTSCEECCHHHHHHHCTT-EEEEEEESSBTTTTBCCCHHHHHHHHHHHHHTTCEEEEEC-TTTTCBCTTCCCCCGGG
T ss_pred eecCCCceEeeHHHHHHHhhc-CCEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCCEEEeec-cccccccCCCCccCHHH
Confidence 3 4555 666 999999998 789999 789999999999999999953 33322111 1123
Q ss_pred cc-----ceEEEecC-ccccccCCCCCCcEEEEEEch-hhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCC
Q 001989 347 LG-----ADIVVGSA-QRFGVPMGYGGPHAAFLATSQ-EYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSN 419 (985)
Q Consensus 347 ~G-----aDi~v~s~-k~lg~P~~~GGP~~G~l~~~~-~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsn 419 (985)
++ .+++++|. |.++.| |..+|++.+++ ++.+.+... +....+.+
T Consensus 222 ~~~~~~~~~i~~~s~sK~~g~~----G~r~G~~~~~~~~~~~~~~~~-------------------------~~~~~~~~ 272 (391)
T 4dq6_A 222 ISKEFEKNTITCMAPTKTFNIA----GLQSSYVVLPDEKDYKLLDDA-------------------------FTRIDIKR 272 (391)
T ss_dssp SCHHHHHTEEEEECSHHHHTCG----GGCCEEEECCSHHHHHHHHHH-------------------------HHHTTCCC
T ss_pred cCccccCcEEEEEechhhccCc----ccceEEEEeCCHHHHHHHHHH-------------------------HHhhcCCC
Confidence 33 33888887 888533 33468888775 665544100 00001111
Q ss_pred ccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhc-CCCeEEcCCCCcceEEEecC--C--HHHHHHHHHH
Q 001989 420 ICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKK-LGTVEVQGLPFFDTVKVKCA--D--AHAIASAAYK 494 (985)
Q Consensus 420 i~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~-~g~~~~~~~~~~~~~~~~~~--~--~~~v~~~L~~ 494 (985)
. +.....+..+++ . .+.+.++++.++..++.+++.+.|++ ++++++..+...-.+.+.++ + ..++.+.|.+
T Consensus 273 ~-~~~~~~a~~~~l--~-~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 348 (391)
T 4dq6_A 273 N-NCFSLVATEASY--N-NGESWLESFLEYLESNIDFAIKYINENMPKLKVRKPEGTYLLWVDFSALGLSDEELESILVQ 348 (391)
T ss_dssp C-CHHHHHHHHHHH--H-HCHHHHHHHHHHHHHHHHHHHHHHHHHCTTSEECCCSBSSEEEEECGGGCCCHHHHHHHHHH
T ss_pred C-CHHHHHHHHHHH--h-chHHHHHHHHHHHHHHHHHHHHHHHhhCCCCEecCCCccEEEEEEhhhcCCCHHHHHHHHHH
Confidence 1 011222222222 2 23445788889999999999999988 53488764321111224443 2 8899999999
Q ss_pred c-Cceeeee------cCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 495 I-EMNLRVV------DSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 495 ~-GI~~~~~------~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
+ ||.+... ..+.+|++++ +++++|+++++.|.+
T Consensus 349 ~~gi~v~~g~~~~~~~~~~iRis~~--~~~~~i~~~l~~l~~ 388 (391)
T 4dq6_A 349 KGKVALNQGNSFGIGGSGYQRINLA--CPRSMLEEALIRIKN 388 (391)
T ss_dssp TTCEECEEGGGGCTTCTTEEEEECC--SCHHHHHHHHHHHHH
T ss_pred hCCEEeeCchhhCCCCCCeEEEEEc--CCHHHHHHHHHHHHH
Confidence 8 9988542 1478999998 689999999998863
|
| >3jzl_A Putative cystathionine beta-lyase involved in ALU resistance; putative cystathionine beta-lyase involved in aluminum resis structural genomics; HET: LLP; 1.91A {Listeria monocytogenes str} PDB: 3fd0_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=8.6e-16 Score=176.96 Aligned_cols=220 Identities=16% Similarity=0.107 Sum_probs=153.9
Q ss_pred HHHHHHHHHHhcCCCCcceee-ccchHHHHHHHHHHhhhhcCCCCEEEEcC-CCChhHHHHHH------HhhcCCCeEEE
Q 001989 213 LLNFQTMIADLTGLPMSNASL-LDEGTAAAEAMAMCNNIQKGKKKTFIIAS-NCHPQTIDICI------TRADGFDIKVV 284 (985)
Q Consensus 213 i~e~q~~ia~L~g~~~~~~sl-~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~-~~H~s~~~~~~------~~a~~~gi~v~ 284 (985)
..++++.+|+++|.+.+.+.. +.+||+++.+++.++ . ++||+||+++ ..|+.+...+. ..++..|++++
T Consensus 61 ~~~Le~~lA~l~g~e~alv~p~~~sGt~Ai~~al~al-l--~~GD~Vl~~~~~~y~~~~~~~~~~g~~~~~l~~~G~~~~ 137 (409)
T 3jzl_A 61 RDTLERVYATVFKTEAALVRPQIISGTHAISTVLFGI-L--RPDDELLYITGQPYDTLEEIVGIRKQGQGSLKDFHIGYS 137 (409)
T ss_dssp HHHHHHHHHHHHTCSEEEEETTSCSHHHHHHHHHHHH-C--CTTCEEEECSSSCCTTHHHHHTSSSSSSSCTGGGTCEEE
T ss_pred HHHHHHHHHHHhCCCcEEEECCCccHHHHHHHHHHHh-c--CCCCEEEEeCCCCcHhHHHHHhcccchhhHHHHcCCEEE
Confidence 456778999999998743321 788888877766654 2 3899999998 89988887652 23445799999
Q ss_pred EeCc--------hhhhc-cCCCEeEEEEEc----C-CCCeeeccHHHHHHHHHh--CCcEEEEEecCccccC-CCCCCcc
Q 001989 285 VSDL--------KDIDY-KSGDVCGVLVQY----P-GTEGEVLDYGDFIKNAHA--NGVKVVMATDLLALTI-LKPPGEL 347 (985)
Q Consensus 285 ~v~~--------~~l~~-l~~~t~~V~v~~----p-n~~G~v~di~~I~~~a~~--~galliV~a~~~~lg~-l~~~~~~ 347 (985)
++|. +++++ ++++|++|++++ | |++|.+.|+++|+++||+ +|++++|| +.++.+. ...|.++
T Consensus 138 ~v~~~~~g~~d~e~l~~ai~~~tklV~i~~s~g~p~nptg~v~~l~~I~~la~~~~~~~~livD-~a~~~~~~~~~p~~~ 216 (409)
T 3jzl_A 138 SVPLLENGDVDFPRIAKKMTPKTKMIGIQRSRGYADRPSFTIEKIKEMIVFVKNINPEVIVFVD-NCYGEFVEYQEPPEV 216 (409)
T ss_dssp ECCCCTTSCCCHHHHHHHCCTTEEEEEEECSCTTSSSCCCCHHHHHHHHHHHHHHCTTCEEEEE-CTTCTTTSSCCSGGG
T ss_pred EeCCCCCCCcCHHHHHHhccCCCeEEEEECCCCCCCCCcCccccHHHHHHHHHhhCCCCEEEEe-CCcccccccCCcccc
Confidence 8875 35566 788999999998 8 789999999999999999 99999995 4555554 3467789
Q ss_pred cceEEEecC-ccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHH
Q 001989 348 GADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQAL 426 (985)
Q Consensus 348 GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l 426 (985)
|+|++++|. |.|+++ |.|..|++++++++++++..+.. ...+.+..+.+ ....
T Consensus 217 g~Div~~S~sK~lgg~---~~~~GG~v~~~~~li~~l~~~~~-------------------~~~~g~~~g~~----~~~~ 270 (409)
T 3jzl_A 217 GADIIAGSLIKNPGGG---LAKTGGYIAGKEALVDLCGYRLT-------------------TPGIGREAGAS----LYSL 270 (409)
T ss_dssp TCSEEEEETTSGGGTT---TCSSCEEEEECHHHHHHHHHHHS-------------------CTTTGGGCCCC----TTCH
T ss_pred CCeEEEECccccCCcc---CCceEEEEEeCHHHHHHHHHHhc-------------------ccccccccccc----HHHH
Confidence 999999998 877642 22555899999988776521100 00011111110 0111
Q ss_pred HHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEc
Q 001989 427 LANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQ 470 (985)
Q Consensus 427 ~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~ 470 (985)
+++..+ .+-+..+.++..+++.++++.|+++| +++.
T Consensus 271 ~~~l~g-------l~~~~~r~~~~~~~a~~la~~L~~~g-~~v~ 306 (409)
T 3jzl_A 271 LEMYQG-------FFLAPHVTAQAIKGARFTAAMLAEFG-VEAD 306 (409)
T ss_dssp HHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHTT-CEEE
T ss_pred HHHHHH-------HhhHHHHHHHHHHHHHHHHHHHHhCC-Cccc
Confidence 111111 12345677788899999999999998 7775
|
| >2ctz_A O-acetyl-L-homoserine sulfhydrylase; crystal, O-acetyl homoserine sulfhydrase, structural genomic structural genomics/proteomics initiative; HET: PLP; 2.60A {Thermus thermophilus} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.68 E-value=4.2e-15 Score=172.38 Aligned_cols=145 Identities=14% Similarity=0.160 Sum_probs=115.8
Q ss_pred HHHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHH----HHCCcEEEEE-
Q 001989 633 MFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATA----AMCGMKIVSV- 707 (985)
Q Consensus 633 ~~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a----~~~G~~vv~v- 707 (985)
...++++.+++++|.+.. +.+++|++|+..++.++. .++++||++...|+.+.... +..|++++.+
T Consensus 59 ~~~~l~~~la~~~g~~~~-v~~~sGt~A~~~~l~~~~--------~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 129 (421)
T 2ctz_A 59 TVDVLEKRLAALEGGKAA-LATASGHAAQFLALTTLA--------QAGDNIVSTPNLYGGTFNQFKVTLKRLGIEVRFTS 129 (421)
T ss_dssp HHHHHHHHHHHHHTCSEE-EEESSHHHHHHHHHHHHC--------CTTCEEEECSCCCHHHHHHHHTHHHHTTCEEEECC
T ss_pred HHHHHHHHHHHHhCCCce-EEecCHHHHHHHHHHHHh--------CCCCEEEEeCCCchHHHHHHHHHHHHcCCEEEEEC
Confidence 356888999999998754 666778877755544331 36789999988776654443 6789999999
Q ss_pred cCCCCCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccc-cccccCCCCCCccCCc
Q 001989 708 GTDAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGAN-MNAQVGLTSPGYIGAD 785 (985)
Q Consensus 708 ~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~galliVD~a~-~~~~~~l~~pg~~g~D 785 (985)
+.+ |+++|+++|+ ++|++|++++| |.+|.+. |+++|+++|+++|+++++|++| ..+. ...+..+++|
T Consensus 130 ~~~-----d~~~l~~~i~---~~~~~v~~~~~~n~~G~~~-~l~~i~~~a~~~g~~livD~~~~~~g~--~~~~~~~~~D 198 (421)
T 2ctz_A 130 REE-----RPEEFLALTD---EKTRAWWVESIGNPALNIP-DLEALAQAAREKGVALIVDNTFGMGGY--LLRPLAWGAA 198 (421)
T ss_dssp TTC-----CHHHHHHHCC---TTEEEEEEESSCTTTCCCC-CHHHHHHHHHHHTCEEEEECGGGGGGT--SCCGGGGTCS
T ss_pred CCC-----CHHHHHHhhc---cCCeEEEEECCCCCCCccc-CHHHHHHHHHHcCCEEEEECCcccccc--cCCccccCCe
Confidence 764 8999999997 79999999998 5689998 8999999999999999999998 5442 2345567899
Q ss_pred EEEeCCcccccc
Q 001989 786 VCHLNLHKTFCI 797 (985)
Q Consensus 786 i~~~s~hK~l~~ 797 (985)
++++|+||+|+.
T Consensus 199 i~~~s~~K~l~~ 210 (421)
T 2ctz_A 199 LVTHSLTKWVGG 210 (421)
T ss_dssp EEEEETTTTTTC
T ss_pred EEEECCcccccC
Confidence 999999999953
|
| >3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A | Back alignment and structure |
|---|
Probab=99.68 E-value=6.7e-15 Score=167.20 Aligned_cols=265 Identities=12% Similarity=0.032 Sum_probs=184.1
Q ss_pred HHHHHHHHh------cCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc
Q 001989 215 NFQTMIADL------TGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL 288 (985)
Q Consensus 215 e~q~~ia~L------~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~ 288 (985)
++++.+|++ ++.++.++.+++|+++++++++.++. ++||+|++++..|+++...++. .|.+++.++.
T Consensus 73 ~l~~~la~~l~~~~g~~~~~~~v~~~~G~~~al~~~~~~l~---~~gd~Vl~~~~~y~~~~~~~~~----~g~~~~~v~~ 145 (369)
T 3cq5_A 73 ELRDELAAYITKQTGVAVTRDNLWAANGSNEILQQLLQAFG---GPGRTALGFQPSYSMHPILAKG----THTEFIAVSR 145 (369)
T ss_dssp HHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHHHHHC---STTCEEEEEESSCTHHHHHHHH----TTCEEEEEEC
T ss_pred HHHHHHHHhhhhcccCCCChHhEEECCChHHHHHHHHHHhc---CCCCEEEEcCCChHHHHHHHHH----cCCEEEEecC
Confidence 466677777 56667788899999988877766542 3789999999999998887653 5777777653
Q ss_pred --------hhhhc-cCC-CEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCC-CC----CCccc-ceE
Q 001989 289 --------KDIDY-KSG-DVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTIL-KP----PGELG-ADI 351 (985)
Q Consensus 289 --------~~l~~-l~~-~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l-~~----~~~~G-aDi 351 (985)
+++++ +++ ++++|++.+| |.+|.+.|++++.++++.+++++++| +..+.+.. .+ ...++ .++
T Consensus 146 ~~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~~~~l~~l~~~~~~~li~D-e~~~~~~~~~~~~~~~~~~~~~~i 224 (369)
T 3cq5_A 146 GADFRIDMDVALEEIRAKQPDIVFVTTPNNPTGDVTSLDDVERIINVAPGIVIVD-EAYAEFSPSPSATTLLEKYPTKLV 224 (369)
T ss_dssp CTTSSCCHHHHHHHHHHHCCSEEEEESSCTTTCCCCCHHHHHHHHHHCSSEEEEE-CTTGGGCCSCCGGGGTTTCTTTEE
T ss_pred CcCCCCCHHHHHHHhhccCCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCEEEEE-CCchhhcCCcchHHHHhhCCCCEE
Confidence 34555 555 7899999888 67999999999999999999988885 33333222 11 12356 778
Q ss_pred EEecC-ccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHH
Q 001989 352 VVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANM 430 (985)
Q Consensus 352 ~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~ 430 (985)
+++|. |.|+.| |..+|++++++++.+.+... .. ..+.| .....+..
T Consensus 225 ~~~s~sK~~~~~----G~r~G~~~~~~~~~~~l~~~----------~~----------------~~~~~---~~~~~a~~ 271 (369)
T 3cq5_A 225 VSRTMSKAFDFA----GGRLGYFVANPAFIDAVMLV----------RL----------------PYHLS---ALSQAAAI 271 (369)
T ss_dssp EEEESSSTTSCG----GGCCEEEEECTHHHHHHHTT----------SC----------------TTCSC---HHHHHHHH
T ss_pred EEEechHhcCCc----ccceEEEEeCHHHHHHHHHc----------CC----------------CCCCC---HHHHHHHH
Confidence 89987 777532 23469999988876654110 00 00111 11121222
Q ss_pred HHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCCCcceEEEecCC-HHHHHHHHHHcCceeeee-cCCeEE
Q 001989 431 AAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDTVKVKCAD-AHAIASAAYKIEMNLRVV-DSNTVT 508 (985)
Q Consensus 431 aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~-~~~v~~~L~~~GI~~~~~-~~~~lr 508 (985)
++ +. ..+.++++.++..++.+++.+.|++.| +++... ...-+.+..+. ..++.+.|.++||.+... .++.+|
T Consensus 272 ~~--l~--~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~-~~~~~~~~~~~~~~~l~~~l~~~gi~v~~~~~~~~iR 345 (369)
T 3cq5_A 272 VA--LR--HSADTLGTVEKLSVERVRVAARLEELG-YAVVPS-ESNFVFFGDFSDQHAAWQAFLDRGVLIRDVGIAGHLR 345 (369)
T ss_dssp HH--HH--THHHHHTHHHHHHHHHHHHHHHHHHHT-CEEECC-SSSEEEEECCSSHHHHHHHHHHTTEECBCCSCTTEEE
T ss_pred HH--hc--CHHHHHHHHHHHHHHHHHHHHHHHhCC-CEECCC-CCeEEEEECCCCHHHHHHHHHHCCEEEEECCCCCeEE
Confidence 22 22 234578888899999999999998876 877632 22234455553 788999999999988653 257899
Q ss_pred EEeccCCCHHHHHHHHHHHhC
Q 001989 509 ASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 509 is~t~~~t~edId~li~aL~~ 529 (985)
++++ |++|+++++++|.+
T Consensus 346 is~~---~~~~i~~~~~~l~~ 363 (369)
T 3cq5_A 346 TTIG---VPEENDAFLDAAAE 363 (369)
T ss_dssp EECC---CHHHHHHHHHHHHH
T ss_pred EEeC---CHHHHHHHHHHHHH
Confidence 9998 89999999999874
|
| >3ht4_A Aluminum resistance protein; lyase, putative cystathionine BEAT-lyase, aluminium resistance protein, Q81A77_baccr, NESG, BCR213; 2.90A {Bacillus cereus atcc 14579} | Back alignment and structure |
|---|
Probab=99.68 E-value=4.6e-16 Score=180.64 Aligned_cols=255 Identities=14% Similarity=0.040 Sum_probs=168.0
Q ss_pred HHHHHHHHHHHhCCCccce--ecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcC-CCCcccHHHH----------HHC
Q 001989 634 FNNLGEWLCTITGFDSFSL--QPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPV-SAHGTNPATA----------AMC 700 (985)
Q Consensus 634 ~~e~~~~la~l~G~~~~~~--~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~-~~Hg~~~~~a----------~~~ 700 (985)
.+++++++++++|.+...+ +++||++|+.+++.++. .++|+||++. ..|+.+...+ +..
T Consensus 67 ~~~l~~~la~~~g~~~~~~~i~~~sGt~Ai~~al~al~--------~~Gd~Vl~~~~~~y~~~~~~~~l~g~~~~~~~~~ 138 (431)
T 3ht4_A 67 RDTLEKVYADVFGAEAGLVRPQIISGTHAISTALFGIL--------RPGDELLYITGKPYDTLEEIVGVRGKGVGSFKEY 138 (431)
T ss_dssp HHHHHHHHHHHTTCSEECCBTTSCSHHHHHHHHHHTTC--------CTTCEEEECSSSCCTTHHHHTTSSSCSSSCSGGG
T ss_pred HHHHHHHHHHHhCCCcccccceeeCHHHHHHHHHHHhC--------CCCCEEEEeCCCCchhHHHHHhhcccccchHHHc
Confidence 5678899999999987532 35688887765554331 4788999987 7787765443 347
Q ss_pred CcEEEEEcCCCCCCCCHHHHHHHHHhcCCCEEEEEEEc----CC-CccccccCHHHHHHHHHH--cCCEEEEEccccccc
Q 001989 701 GMKIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTY----PS-THGVYEEGIDEICKIIHD--NGGQVYMDGANMNAQ 773 (985)
Q Consensus 701 G~~vv~v~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~----pn-~~G~i~~di~eI~~la~~--~galliVD~a~~~~~ 773 (985)
|++++.++++++|.+|+++|+++++ ++|++|++++ |+ .+|... |+++|+++|++ +|+++++|+++....
T Consensus 139 G~~~~~v~~~~~~~~d~e~l~~~l~---~~tk~V~i~~sp~np~~~~~~~~-~l~~i~~la~~~~~~~~livDea~~~~~ 214 (431)
T 3ht4_A 139 NIGYNAVPLTEGGLVDFEAVAAAIH---SNTKMIGIQRSKGYATRPSFTIS-QIKEMIAFVKEIKPDVVVFVDNCYGEFI 214 (431)
T ss_dssp TCEEEECCBCTTSSBCHHHHHHHCC---TTEEEEEEECSCTTSSSCCCCHH-HHHHHHHHHHHHCTTCEEEEECTTCTTS
T ss_pred CCEEEEeCCCCCCCcCHHHHHhhcC---CCCeEEEEECCCCCCCCCcCCHH-HHHHHHHHHHhhCCCCEEEEeCCChhhc
Confidence 9999999998889999999999997 7999999996 43 467676 89999999999 999999999885322
Q ss_pred cCCCCCCccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCC-CCCCcchhhhHH
Q 001989 774 VGLTSPGYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLG-TIAAAPWGSALI 852 (985)
Q Consensus 774 ~~l~~pg~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~-~i~s~~~g~~~~ 852 (985)
. ...|..+|+|+++.|+||+|+. +++|.+|++++++++.+.+...... .+.+ ....++.....
T Consensus 215 ~-~~~~~~~g~Di~~~S~sK~lgg---~~~~~GG~v~~~~~li~~l~~~~~~-----------~~~g~~~~~~~~~~~~- 278 (431)
T 3ht4_A 215 E-EQEPCHVGADLMAGSLIKNPGG---GIVKTGGYIVGKEQYVEACAYRLTS-----------PGIGAEAGASLYSLQE- 278 (431)
T ss_dssp S-SCCGGGTTCSEEEEETTSGGGT---TTCSSCEEEEECHHHHHHHHHHHSC-----------TTTTTSCSCCCSCSHH-
T ss_pred c-CCCccccCCeEEEcCccccCCC---CCCCceEEEEecHHHHHHHHHHhcc-----------CCcccccCccHHHHHH-
Confidence 1 1356677899999999999862 1235449999998765443211000 0000 00001110111
Q ss_pred HHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceee--EEEEEecCccccCCCCHHHHHHHHHH
Q 001989 853 LPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAH--EFIVDLRGLKNTAGIEPEDVAKRLMD 929 (985)
Q Consensus 853 ~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~--~~iv~~~~~~~~~g~~~~~v~~~L~~ 929 (985)
+...+ +.+..+.++..+++.++++.|++ ++.+ ++.+ ....+ .+.+.+.. .....++++.|.+
T Consensus 279 ---~~~~l-----~~~~~~~~~~~~~a~~l~~~L~~~g~~v-~p~~-~~~~~~li~~i~l~~-----~~~~~~~~~~l~~ 343 (431)
T 3ht4_A 279 ---MYQGF-----FLAPHVAGQALKGAIFTAAFLEKLGMNT-SPAW-NAPRTDLIQSVQFDD-----KDRMIAFCQAIQY 343 (431)
T ss_dssp ---HHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHTCCE-ESCT-TSCCSSSCCEEECCC-----HHHHHHHHHHHHH
T ss_pred ---HHhHh-----hhHHHHHHHHHHHHHHHHHHHHhCcCEe-cCCC-CCCCccEEEEEEeCC-----HHHHHHHHHHHHh
Confidence 11111 23345667788899999999987 6766 4332 11111 12333321 1235678888888
Q ss_pred CC
Q 001989 930 YG 931 (985)
Q Consensus 930 ~G 931 (985)
..
T Consensus 344 ~~ 345 (431)
T 3ht4_A 344 AS 345 (431)
T ss_dssp TS
T ss_pred cC
Confidence 64
|
| >1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS protein structure initiative, joint center for structural G transferase; HET: PLP; 1.90A {Thermotoga maritima} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.68 E-value=9e-15 Score=167.46 Aligned_cols=267 Identities=15% Similarity=0.116 Sum_probs=182.1
Q ss_pred HHHHHHHHhc----CC--CCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc
Q 001989 215 NFQTMIADLT----GL--PMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL 288 (985)
Q Consensus 215 e~q~~ia~L~----g~--~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~ 288 (985)
++++.+|+++ |. ++.++.+++|+|.+++.++.++ . ++||+|++++..|+++...++. .|++++.++.
T Consensus 82 ~lr~~la~~~~~~~g~~~~~~~v~~~~g~t~al~~~~~~l-~--~~gd~Vl~~~~~~~~~~~~~~~----~g~~~~~v~~ 154 (389)
T 1o4s_A 82 ELREGIAKRIGERYKKDISPDQVVVTNGAKQALFNAFMAL-L--DPGDEVIVFSPVWVSYIPQIIL----AGGTVNVVET 154 (389)
T ss_dssp HHHHHHHHHHHHHHTCCCCGGGEEEESHHHHHHHHHHHHH-C--CTTCEEEEEESCCTTHHHHHHH----TTCEEEEEEC
T ss_pred HHHHHHHHHHHHHhCCCCCHHHEEEecCHHHHHHHHHHHh-C--CCCCEEEEcCCCchhHHHHHHH----cCCEEEEEec
Confidence 3555666665 76 5668989999998888777654 2 3789999999999998887653 5777777653
Q ss_pred ----------hhhhc-cCCCEeEEEEEcC-CCCeeecc---HHHHHHHHHhCCcEEEEEecCccccCCC----CCC----
Q 001989 289 ----------KDIDY-KSGDVCGVLVQYP-GTEGEVLD---YGDFIKNAHANGVKVVMATDLLALTILK----PPG---- 345 (985)
Q Consensus 289 ----------~~l~~-l~~~t~~V~v~~p-n~~G~v~d---i~~I~~~a~~~galliV~a~~~~lg~l~----~~~---- 345 (985)
++|++ +++++++|++.+| |++|.+.| +++|+++|+++|+++++|. ..+.+... +..
T Consensus 155 ~~~~~~~~d~~~l~~~l~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De-a~~~~~~~g~~~~~~~~~~ 233 (389)
T 1o4s_A 155 FMSKNFQPSLEEVEGLLVGKTKAVLINSPNNPTGVVYRREFLEGLVRLAKKRNFYIISDE-VYDSLVYTDEFTSILDVSE 233 (389)
T ss_dssp CGGGTTCCCHHHHHHTCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEC-TTTTSBCSSCCCCHHHHCS
T ss_pred CCccCCCCCHHHHHHhcccCceEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEc-cccccccCCCCCCHhhcCC
Confidence 34555 7778999999988 67999865 9999999999999999953 33332221 111
Q ss_pred cccceEEEecC-ccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchh
Q 001989 346 ELGADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQ 424 (985)
Q Consensus 346 ~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~ 424 (985)
..+.|++++|. |.|+.| |..+|++++++++.+.+... +...+.+. .
T Consensus 234 ~~~~~i~~~s~sK~~~~~----G~r~G~l~~~~~~~~~l~~~--------------------------~~~~~~~~---~ 280 (389)
T 1o4s_A 234 GFDRIVYINGFSKSHSMT----GWRVGYLISSEKVATAVSKI--------------------------QSHTTSCI---N 280 (389)
T ss_dssp SSTTEEEEEESTTTTTCG----GGCCEEEECCHHHHHHHHHH--------------------------HHHHTCSC---C
T ss_pred CCCcEEEEeechhhcCCc----ccceEEEEeCHHHHHHHHHH--------------------------hhhcccCC---C
Confidence 25789999997 776422 12279999988876654110 00011111 1
Q ss_pred HHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCCCcceEEEecC-CHHHHHHHHH-HcCceeeee
Q 001989 425 ALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDTVKVKCA-DAHAIASAAY-KIEMNLRVV 502 (985)
Q Consensus 425 ~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~~~~~~~~~~~-~~~~v~~~L~-~~GI~~~~~ 502 (985)
.+ +..++. ..+. .+++++.++..++.+++.+.|+++| +++..+....-+.+..+ +..++.++|. ++||.+...
T Consensus 281 ~~-~~~a~~--~~l~-~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~g 355 (389)
T 1o4s_A 281 TV-AQYAAL--KALE-VDNSYMVQTFKERKNFVVERLKKMG-VKFVEPEGAFYLFFKVRGDDVKFCERLLEEKKVALVPG 355 (389)
T ss_dssp HH-HHHHHH--HHTT-CCCHHHHHHHHHHHHHHHHHHHHTT-CCCCCCSBSSEEEEECSSCHHHHHHHHHHHHCEECEEG
T ss_pred HH-HHHHHH--HHHh-ccHHHHHHHHHHHHHHHHHHHHhcC-CeeecCCcceEEEEeCCCCHHHHHHHHHHHCCEEEeCc
Confidence 11 112222 2332 3478889999999999999999986 77653211111233443 4788999997 789987543
Q ss_pred ----cCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 503 ----DSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 503 ----~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
.++.+|++++ +++++|+++++.|.+
T Consensus 356 ~~f~~~~~~Ris~~--~~~~~l~~~l~~l~~ 384 (389)
T 1o4s_A 356 SAFLKPGFVRLSFA--TSIERLTEALDRIED 384 (389)
T ss_dssp GGGTCTTEEEEECC--SCHHHHHHHHHHHHH
T ss_pred hhcCCCCeEEEEEe--CCHHHHHHHHHHHHH
Confidence 1478999998 499999999988863
|
| >3f6t_A Aspartate aminotransferase; YP_194538.1, STRU genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: LLP; 2.15A {Lactobacillus acidophilus ncfm} | Back alignment and structure |
|---|
Probab=99.68 E-value=7.6e-16 Score=184.02 Aligned_cols=326 Identities=11% Similarity=0.046 Sum_probs=187.0
Q ss_pred hhHHHHHHHHHHHHHHHhCC--Cc---cc-eecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCC
Q 001989 628 QGYQEMFNNLGEWLCTITGF--DS---FS-LQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCG 701 (985)
Q Consensus 628 ~G~~~~~~e~~~~la~l~G~--~~---~~-~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G 701 (985)
.|..++.+++.+++.+.++. +. .. +++++|++++..++.++.. ..-..++++|+++++.|..+...++..|
T Consensus 138 ~g~~~lr~~ia~~l~~~~~~~~~~~~~~~i~~t~G~t~al~~~~~~l~~---~~l~~~gd~Viv~~p~~~~~~~~~~~~g 214 (533)
T 3f6t_A 138 RCLVNTEKIINYFLQELSYKDANLAEQTDLFPTEGGTAAIVYAFHSLAE---NHLLKKGDKIAINEPIFTPYLRIPELKD 214 (533)
T ss_dssp SCCHHHHHHHHHHHHHHHTTTCCCGGGEEEEEEEHHHHHHHHHHHHHHH---TTSSCTTCEEEEESSCCHHHHTSGGGGG
T ss_pred ccHHHHHHHHHHHHHHhcCCCCCCCCcceEEEECCHHHHHHHHHHHhhh---hhccCCcCEEEEcCCCcHHHHHHHHHcC
Confidence 46556666666666555232 21 23 4445555555443333211 0012467999999987766655567789
Q ss_pred cEEEEEcCC----CCCCCCHHHHHHHHHhcCCCEEEEEEEcCC-Cccccc--cCHHHHHHHHH-HcCCEEEEEccccccc
Q 001989 702 MKIVSVGTD----AKGNINIEELRKAAEANRDNLSTLMVTYPS-THGVYE--EGIDEICKIIH-DNGGQVYMDGANMNAQ 773 (985)
Q Consensus 702 ~~vv~v~~d----~~g~iD~e~L~~~i~~~~~~t~~Vvv~~pn-~~G~i~--~di~eI~~la~-~~galliVD~a~~~~~ 773 (985)
++++.++++ .++.+|+++|+++++ +++++|++++|+ ++|.+. .++++|+++|+ ++|+++++|++|....
T Consensus 215 ~~~~~v~~~~~~~~~~~~d~~~l~~~l~---~~~k~v~l~~p~NPtG~~~~~~~l~~l~~la~~~~~~~li~De~y~~~~ 291 (533)
T 3f6t_A 215 YELVEVDLHSYEKNDWEIEPNEIEKLKD---PSIKALIVVNPTNPTSKEFDTNALNAIKQAVEKNPKLMIISDEVYGAFV 291 (533)
T ss_dssp SEEEEECCCEETTTTSEECHHHHHHHSC---TTEEEEEEESSCTTTCBCCCHHHHHHHHHHHHHCTTCEEEEECTTGGGS
T ss_pred CeEEEEEecCCcccCCCCCHHHHHHHhC---CCCeEEEEeCCCCCCccccCHHHHHHHHHHHHhCCCCEEEEcCCccccc
Confidence 999999985 347899999999997 799999999994 699986 13558888888 6899999999984211
Q ss_pred cCCCCCC--ccCCcEEEeCCcccccccCCCCCCceEEEEEccc-----ccCcCCCCc-------ccc-CCCC--C-----
Q 001989 774 VGLTSPG--YIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKH-----LAPFLPSHP-------VVS-TGGI--P----- 831 (985)
Q Consensus 774 ~~l~~pg--~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~-----l~~~lp~~~-------~g~-~~~~--~----- 831 (985)
....... ..+.++++.|++|+|+.| |.++|+++++++ +...++... ++. +.+. .
T Consensus 292 ~~~~~~~~~~~~~~i~~~S~SK~~g~~----G~RiG~l~~~~~~~~~~li~~l~~~~~~~~~~~~~~~~~~p~~~~~i~r 367 (533)
T 3f6t_A 292 PNFKSIYSVVPYNTMLVYSYSKLFGCT----GWRLGVIALNEKNVFDDNIAHLDKVELRQLHKRYSSVVLDPDKMKFIDR 367 (533)
T ss_dssp TTCCCHHHHSGGGEEEEEESHHHHTCG----GGCEEEEEEESSCHHHHHHHTSCHHHHHHHHHHHHTTCSCGGGCCHHHH
T ss_pred cCccCHhhcCCCCEEEEecCcccCCCc----ccceEEEEECcHHHHHHHHHhcchhhHHHHHhhhhccccCcchhhhHHH
Confidence 1111111 113458899999998543 567999999876 544442100 000 0000 0
Q ss_pred -----CCCCCCCCCCCCCcchhhhHHHHHHHHHHHHh--------cHHHHHHHHHHHHHHHHHHHHHhhccCCeeecCCC
Q 001989 832 -----APEKSQPLGTIAAAPWGSALILPISYTYIAMM--------GSKGLTEASKIAILNANYMAKRLEKHYPILFRGVN 898 (985)
Q Consensus 832 -----~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~l--------g~eGl~~~~~~~~~~a~~l~~~L~~g~~l~~~~~~ 898 (985)
+..+...+.+.+ ...+. +.+...+..+ ..+.+++..++..++.+++.+.|. +++....+.
T Consensus 368 l~~~~~~~~~~~~~~~~--~~~q~---a~a~~a~~~L~~~~g~~~~~~~~~~~~~~~~~r~~~l~~~L~--~~~~~~~~~ 440 (533)
T 3f6t_A 368 LCADSRSIGLYHTAGLS--TPQQI---MEALFSMTHLLTSTNGGSDDPYIDIARKLVSERYDQLHDAMQ--APKDETDTN 440 (533)
T ss_dssp HHHHHTTTTTGGGCSCC--HHHHH---HHHHHHHHHHTTCBGGGTBCHHHHHHHHHHHHHHHHHHHHHT--CCCCCSTTB
T ss_pred HHHHHHHHHHhcccCCC--hHHHH---HHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHHhcC--CCccccCCC
Confidence 000001111111 11121 1111122222 223455556667788888988886 333222222
Q ss_pred CceeeEEEEEecCcc-ccCC----------CCHHHHHHHHH-HCCCccCCCC-CC-CCCEEEEeccCCCCHHHHHHHHcc
Q 001989 899 GTVAHEFIVDLRGLK-NTAG----------IEPEDVAKRLM-DYGFHGPTMS-WP-VPGTLMIEPTESESKSWTGIVMLS 964 (985)
Q Consensus 899 ~~~~~~~iv~~~~~~-~~~g----------~~~~~v~~~L~-~~Gi~~~~~~-~p-~~~~lris~t~~~t~eeId~~~~~ 964 (985)
+..+ +.++++.+. ...+ .+..+++.+|. ++||.+.... +. ..+++|+++.. .+++||++ ++
T Consensus 441 ~g~~--~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~ll~~~GV~v~pg~~f~~~~~~iRls~a~-~~~e~i~~--~i 515 (533)
T 3f6t_A 441 THYY--SLIDIYRLAEKIYGKEFRDYLTNNFEQVDFLLKLAEKNGVVLVDGVGFGAKPGELRVSQAN-LPTEDYAL--IG 515 (533)
T ss_dssp CCSE--EEEEHHHHHHHHHCHHHHHHHHHHCCHHHHHHHHHHHTTSSSCTTEEECSSTTEEEEESSS-SCHHHHHH--HH
T ss_pred ceEE--EEEehHhhhhhccchHHHHHhhccCCHHHHHHHHHHhCCEEEeCCcccCCCCCEEEEEEee-CCHHHHHH--HH
Confidence 2332 334443100 0001 24556666655 6799875422 21 25899999854 57999999 78
Q ss_pred CChhHHHHhhc
Q 001989 965 SPSEKKLHRLK 975 (985)
Q Consensus 965 ~~l~~~~~~~~ 975 (985)
+.|++++++++
T Consensus 516 ~~L~~~l~~~~ 526 (533)
T 3f6t_A 516 KQVLELLKEYY 526 (533)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88888887654
|
| >1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=1.5e-14 Score=163.68 Aligned_cols=265 Identities=12% Similarity=0.079 Sum_probs=181.8
Q ss_pred HHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCC-CEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc----
Q 001989 214 LNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKK-KTFIIASNCHPQTIDICITRADGFDIKVVVSDL---- 288 (985)
Q Consensus 214 ~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g-~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~---- 288 (985)
.++++.+|+++|.++.++.+++|++.+++.++.++. ++| |+|+++...|+.+...++. .|.+++.++.
T Consensus 61 ~~lr~~la~~~~~~~~~v~~~~G~~~ai~~~~~~~~---~~g~d~Vl~~~p~~~~~~~~~~~----~g~~~~~v~~~~~~ 133 (356)
T 1fg7_A 61 KAVIENYAQYAGVKPEQVLVSRGADEGIELLIRAFC---EPGKDAILYCPPTYGMYSVSAET----IGVECRTVPTLDNW 133 (356)
T ss_dssp HHHHHHHHHHHTSCGGGEEEESHHHHHHHHHHHHHC---CTTTCEEEECSSSCTHHHHHHHH----HTCEEEECCCCTTS
T ss_pred HHHHHHHHHHhCCChHHEEEcCCHHHHHHHHHHHHh---CCCCCEEEEeCCChHHHHHHHHH----cCCEEEEeeCCCCC
Confidence 457789999999998899999999988887776652 378 9999999999998888754 4778877754
Q ss_pred ----hhhhc-cCCCEeEEEEEcC-CCCeeeccH---HHHHHHHHhCCcEEEEEecCcc-cc----CCCCCCcccceEEEe
Q 001989 289 ----KDIDY-KSGDVCGVLVQYP-GTEGEVLDY---GDFIKNAHANGVKVVMATDLLA-LT----ILKPPGELGADIVVG 354 (985)
Q Consensus 289 ----~~l~~-l~~~t~~V~v~~p-n~~G~v~di---~~I~~~a~~~galliV~a~~~~-lg----~l~~~~~~GaDi~v~ 354 (985)
+++++ ++ ++++|++++| |.+|.+.|. ++|+++|+ +|+++++|. ..+ ++ ...-...++.|+++.
T Consensus 134 ~~d~~~l~~~i~-~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~-~~~~li~De-~~~~~~~~~~~~~~~~~~~~~i~~~ 210 (356)
T 1fg7_A 134 QLDLQGISDKLD-GVKVVYVCSPNNPTGQLINPQDFRTLLELTR-GKAIVVADE-AYIEFCPQASLAGWLAEYPHLAILR 210 (356)
T ss_dssp CCCHHHHHTSCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHT-TTCEEEEEC-TTGGGSGGGCSGGGTTTCTTEEEEE
T ss_pred CCCHHHHHHHhc-CCCEEEEeCCCCCCCCCCCHHHHHHHHHhCC-CCCEEEEEc-cchhhcCCCcHHHHHhhCCCEEEEe
Confidence 34555 66 8999999998 679998765 55555566 899999953 322 22 011113467789998
Q ss_pred cC-ccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHH
Q 001989 355 SA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAM 433 (985)
Q Consensus 355 s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~ 433 (985)
|. |.|+.| |..+|++++++++++.+.. .+.+.+ . ..+ +..++.
T Consensus 211 s~sK~~g~~----G~r~G~~~~~~~~~~~l~~----------------------------~~~~~~--~-~~~-~~~a~~ 254 (356)
T 1fg7_A 211 TLSKAFALA----GLRCGFTLANEEVINLLMK----------------------------VIAPYP--L-STP-VADIAA 254 (356)
T ss_dssp ESSSTTCCG----GGCCEEEEECHHHHHHHHH----------------------------HSCSSC--S-CHH-HHHHHH
T ss_pred cchHhhcCc----hhhhEEEEeCHHHHHHHHH----------------------------hcCCCC--C-CHH-HHHHHH
Confidence 87 776432 2336999998887765410 000011 1 111 222222
Q ss_pred HHHHhCcch---HHHHHHHHHHHHHHHHHHHhcCCCeEEcCCCCcceEEEecCCHHHHHHHHHHcCceeee-ec----CC
Q 001989 434 YAVYHGPEG---LKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDTVKVKCADAHAIASAAYKIEMNLRV-VD----SN 505 (985)
Q Consensus 434 ~l~~~g~~G---l~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~~~L~~~GI~~~~-~~----~~ 505 (985)
..+...+ +++..++..++.+++.+.|+++|++....+...+-+.++.+++.++.++|.++||.++. -. ++
T Consensus 255 --~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~~g~~~~~~~ 332 (356)
T 1fg7_A 255 --QALSPQGIVAMRERVAQIIAEREYLIAALKEIPCVEQVFDSETNYILARFKASSAVFKSLWDQGIILRDQNKQPSLSG 332 (356)
T ss_dssp --HHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTEEEECCCSSSEEEEEETTHHHHHHHHHHTTEECEECTTSTTCTT
T ss_pred --HHhcCccHHHHHHHHHHHHHHHHHHHHHHHhCCCceEECCCCCeEEEEECCCHHHHHHHHHHCCEEEEECCCCCCCCC
Confidence 2333334 67888888999999999999986543222222223445554577899999999998876 21 36
Q ss_pred eEEEEeccCCCHHHHHHHHHHHhC
Q 001989 506 TVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 506 ~lris~t~~~t~edId~li~aL~~ 529 (985)
.+|++++ +++|+++++++|++
T Consensus 333 ~iRis~~---~~~e~~~~~~~l~~ 353 (356)
T 1fg7_A 333 CLRITVG---TREESQRVIDALRA 353 (356)
T ss_dssp EEEEECC---CHHHHHHHHHHHHT
T ss_pred eEEEEeC---CHHHHHHHHHHHHh
Confidence 8999987 68999999999975
|
| >2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.67 E-value=2.6e-14 Score=162.57 Aligned_cols=320 Identities=13% Similarity=0.094 Sum_probs=202.0
Q ss_pred HHHHHHHHhcCCCccceecCCCCCCCCCcHHHHHHHHhCC--ccccccCCChhhHhhhHHHHHHHHHHHHHHhc----CC
Q 001989 153 MIEHMQKLASMNKVYKSFIGMGYYNTHVPPVILRNIMENP--AWYTQYTPYQAEIAQGRLESLLNFQTMIADLT----GL 226 (985)
Q Consensus 153 ~~~~~~~l~~~n~~~~~~lG~g~y~~~~p~~v~~~i~~~~--~~~t~~~pyq~e~sqg~l~~i~e~q~~ia~L~----g~ 226 (985)
+.+...+....+..+.+| +.|.++...|+.+.+++.+.- .....|.+ .+ ...++++.+|+++ |.
T Consensus 13 ~~~~~~~~~~~g~~~idl-~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~-----~~----~~~~l~~~ia~~~~~~~g~ 82 (376)
T 2dou_A 13 VDEAKRKARERGVGLIDL-SIGSTDLPPPEAPLKALAEALNDPTTYGYCL-----KS----CTLPFLEEAARWYEGRYGV 82 (376)
T ss_dssp HHHHHHHHHHTTCCCEEC-SSCCCCCCCCHHHHHHHHHHTTCGGGSSCCC-----HH----HHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHhhccCCCEEec-cCCCCCCCCCHHHHHHHHHHHhCCCcCCCCC-----CC----CCHHHHHHHHHHHHHHhCC
Confidence 334444443334434333 444444445666654544321 11223332 12 2345667777776 87
Q ss_pred C--Cc-ceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc--------hhhhc-c
Q 001989 227 P--MS-NASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL--------KDIDY-K 294 (985)
Q Consensus 227 ~--~~-~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~--------~~l~~-l 294 (985)
+ +. ++.+++|+|.+++.++.++. ++||+|+++...|+.+...++. .|.+++.++. +++++ +
T Consensus 83 ~~~~~~~v~~~~g~~~a~~~~~~~l~---~~gd~vl~~~p~y~~~~~~~~~----~g~~~~~~~~~~~~~~d~~~l~~~l 155 (376)
T 2dou_A 83 GLDPRREALALIGSQEGLAHLLLALT---EPEDLLLLPEVAYPSYFGAARV----ASLRTFLIPLREDGLADLKAVPEGV 155 (376)
T ss_dssp CCCTTTSEEEESSHHHHHHHHHHHHC---CTTCEEEEESSCCHHHHHHHHH----TTCEEEEECBCTTSSBCGGGSCHHH
T ss_pred CCCCCccEEEcCCcHHHHHHHHHHhc---CCCCEEEECCCCcHhHHHHHHH----cCCEEEEeeCCCCCCCCHHHHHHhh
Confidence 5 34 78899999988877766542 3789999999999998887653 5788887764 34444 5
Q ss_pred CCCEeEEEEEcC-CCCeeecc---HHHHHHHHHhCCcEEEEEecCccccCC----CC----CCcccceEEEecC-ccccc
Q 001989 295 SGDVCGVLVQYP-GTEGEVLD---YGDFIKNAHANGVKVVMATDLLALTIL----KP----PGELGADIVVGSA-QRFGV 361 (985)
Q Consensus 295 ~~~t~~V~v~~p-n~~G~v~d---i~~I~~~a~~~galliV~a~~~~lg~l----~~----~~~~GaDi~v~s~-k~lg~ 361 (985)
++++++|++++| |.+|.+.| +++|+++|+++|+++++| +..+.... .+ .+..+.|++++|. |.|+.
T Consensus 156 ~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~D-e~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~ 234 (376)
T 2dou_A 156 WREAKVLLLNYPNNPTGAVADWGYFEEALGLARKHGLWLIHD-NPYVDQVYEGEAPSPLALPGAKERVVELFSLSKSYNL 234 (376)
T ss_dssp HHHEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEE-CTTGGGBSSSCCCCGGGSTTGGGTEEEEEEHHHHHTC
T ss_pred ccCceEEEECCCCCCcCccCCHHHHHHHHHHHHHcCCEEEEE-ccchhcccCCCCCChhhcCCCCCcEEEEecchhhcCC
Confidence 567899999888 67998865 788999999999999995 33332211 01 1234678989887 87753
Q ss_pred cCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhH-HHHHHHHHHHHHhCc
Q 001989 362 PMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQA-LLANMAAMYAVYHGP 440 (985)
Q Consensus 362 P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~-l~a~~aa~~l~~~g~ 440 (985)
| |..+|++++++++++.+... +. ..+ .+++.. ..+..++ +. .+.
T Consensus 235 ~----G~r~G~~~~~~~~~~~l~~~-------------------------~~-~~~--~~~~~~~~~a~~~~--l~-~~~ 279 (376)
T 2dou_A 235 A----GFRLGFALGSEEALARLERV-------------------------KG-VID--FNQYAGVLRMGVEA--LK-TPK 279 (376)
T ss_dssp G----GGCCEEEEECHHHHHHHHHH-------------------------HH-HHC--CCSCHHHHHHHHHH--HT-SCH
T ss_pred h----hheeEEEecCHHHHHHHHHH-------------------------HH-hcc--cCCCHHHHHHHHHH--Hh-CcH
Confidence 2 23468999988877655100 00 000 111111 1121111 12 234
Q ss_pred chHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCCCcceEEEecCC---HHHHHHHHHHcCceeeee------cCCeEEEEe
Q 001989 441 EGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDTVKVKCAD---AHAIASAAYKIEMNLRVV------DSNTVTASF 511 (985)
Q Consensus 441 ~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~---~~~v~~~L~~~GI~~~~~------~~~~lris~ 511 (985)
+.++++.++..++.+++.+.|+++ +++..+....-+.+..+. ..++.+.|.++||.+... .++.+|+++
T Consensus 280 ~~~~~~~~~~~~~~~~l~~~L~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~f~~~~~~~~Ris~ 357 (376)
T 2dou_A 280 EVVRGYARVYRERALGMAEALKGV--LSLLPPRATMYLWGRLPEGVDDLEFGLRLVERGVALAPGRGFGPGGKGFVRIAL 357 (376)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTT--SEECCCCBSSEEEEECCTTCCHHHHHHHHHHTTEECEEGGGGCGGGTTEEEEEC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh--cCccCCCeeEEEEEECCCCCCHHHHHHHHHHCCEEEcCchhhCCCCCCeEEEEe
Confidence 567888888999999999999886 555432111123345542 678999999999987542 147899999
Q ss_pred ccCCCHHHHHHHHHHHhC
Q 001989 512 DETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 512 t~~~t~edId~li~aL~~ 529 (985)
+. ++++|+++++.|.+
T Consensus 358 ~~--~~~~i~~~l~~l~~ 373 (376)
T 2dou_A 358 VR--PLEELLEAAKRIRE 373 (376)
T ss_dssp CS--CHHHHHHHHHHHHH
T ss_pred cC--CHHHHHHHHHHHHH
Confidence 85 89999999998864
|
| >3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=99.67 E-value=1e-15 Score=175.84 Aligned_cols=277 Identities=11% Similarity=0.053 Sum_probs=189.4
Q ss_pred hhHHHHHHHHHHHHHHhcCCCC---cceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEE
Q 001989 207 QGRLESLLNFQTMIADLTGLPM---SNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKV 283 (985)
Q Consensus 207 qg~l~~i~e~q~~ia~L~g~~~---~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v 283 (985)
.|..+...++++.+++++|.+. .++.+++|+|.+++.++.++ . ++||+|+++...|+++...++. .|.++
T Consensus 78 ~g~~~l~~~l~~~l~~~~g~~~~~~~~i~~~~g~~~a~~~~~~~l-~--~~gd~vl~~~~~~~~~~~~~~~----~g~~~ 150 (407)
T 3nra_A 78 RGDLGIRDLLAPRLAAFTGAPVDARDGLIITPGTQGALFLAVAAT-V--ARGDKVAIVQPDYFANRKLVEF----FEGEM 150 (407)
T ss_dssp TCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHHHHHHHTT-C--CTTCEEEEEESCCTHHHHHHHH----TTCEE
T ss_pred CCCHHHHHHHHHHHHHHhCCCCCCCCcEEEeCCcHHHHHHHHHHh-C--CCCCEEEEcCCcccchHHHHHH----cCCEE
Confidence 3555666777889999999853 57889999998877766554 2 3889999999999998888754 47777
Q ss_pred EEeCc--------------hhhhc-cCCCEeEEEEEcC-CCCeeecc---HHHHHHHHHhCCcEEEEEecCccccCCC--
Q 001989 284 VVSDL--------------KDIDY-KSGDVCGVLVQYP-GTEGEVLD---YGDFIKNAHANGVKVVMATDLLALTILK-- 342 (985)
Q Consensus 284 ~~v~~--------------~~l~~-l~~~t~~V~v~~p-n~~G~v~d---i~~I~~~a~~~galliV~a~~~~lg~l~-- 342 (985)
+.++. ++|++ +.+++++|++.+| |.+|.+.+ +++|+++|+++|+++++| +.++.+...
T Consensus 151 ~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D-ea~~~~~~~g~ 229 (407)
T 3nra_A 151 VPVQLDYVSADETRAGLDLTGLEEAFKAGARVFLFSNPNNPAGVVYSAEEIGQIAALAARYGATVIAD-QLYSRLRYAGA 229 (407)
T ss_dssp EEEEBCCCSSCCSSCCBCHHHHHHHHHTTCCEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEE-CTTTTSBCTTC
T ss_pred EEeecccccccCcCCCcCHHHHHHHHhhCCcEEEEcCCCCCCCcccCHHHHHHHHHHHHHcCCEEEEE-ccccccccCCC
Confidence 76654 34555 6668899999998 77999987 999999999999999995 333321111
Q ss_pred --CC------CcccceEEEecC-ccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccc
Q 001989 343 --PP------GELGADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRR 413 (985)
Q Consensus 343 --~~------~~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irr 413 (985)
.+ ...+.+++++|. |.|+.| |..+|++++++++++.+... ++
T Consensus 230 ~~~~~~~~~~~~~~~~i~~~s~sK~~g~~----G~r~G~~~~~~~~~~~l~~~-------------------------~~ 280 (407)
T 3nra_A 230 SYTHLRAEAAVDAENVVTIMGPSKTESLS----GYRLGVAFGSRAIIARMEKL-------------------------QA 280 (407)
T ss_dssp CCCCGGGCTTSCGGGEEEEECSSSTTCCG----GGCCEEEEECHHHHHHHHHH-------------------------HH
T ss_pred CCCChhhcCcccCCcEEEEeCcccccCCC----eeeEEEEEcCHHHHHHHHHH-------------------------Hh
Confidence 11 236678999997 877532 34568999988877655110 00
Q ss_pred cccCCCccchhHHHHHHHHHHHHHh--CcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCCCcceEEEecC--C--HHH
Q 001989 414 DKATSNICTAQALLANMAAMYAVYH--GPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDTVKVKCA--D--AHA 487 (985)
Q Consensus 414 e~atsni~t~~~l~a~~aa~~l~~~--g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~~~~~~~~~~~--~--~~~ 487 (985)
. ...+++ .+ +..++. ..+ +.+.+++..++..++.+++++.|++++++++..+....-+.+.++ + ..+
T Consensus 281 ~---~~~~~~-~~-~~~a~~--~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (407)
T 3nra_A 281 I---VSLRAA-GY-SQAVLR--GWFDEAPGWMEDRIARHQAIRDELLHVLRGCEGVFARTPQAGSYLFPRLPKLAVAPAE 353 (407)
T ss_dssp H---HTSSSC-HH-HHGGGG--GTTCCCTTHHHHHHHHHHHHHHHHHHHHHTSTTCBCCCCSBSSEECCBCCCBSSCHHH
T ss_pred h---hccCCC-hH-HHHHHH--HHHhccchHHHHHHHHHHHHHHHHHHHHhcCCCceeccCCeeEEEEEeCCCCCCCHHH
Confidence 0 011111 11 111111 222 235578888999999999999999983377653221112223332 2 788
Q ss_pred HHHHHHH-cCceeeee------cCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 488 IASAAYK-IEMNLRVV------DSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 488 v~~~L~~-~GI~~~~~------~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
+.+.|.+ +||.+... ..+.+|++++. |++||+++++.|.+
T Consensus 354 ~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~~--~~~~i~~~~~~l~~ 400 (407)
T 3nra_A 354 FVKILRLQAGVVVTPGTEFSPHTADSVRLNFSQ--DHEAAVAAARRIVT 400 (407)
T ss_dssp HHHHHHHHHCEECEEGGGTCTTCTTBEEEECCS--CHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCEEEeCchhhCCCCCCEEEEEeCC--CHHHHHHHHHHHHH
Confidence 9999975 59987642 24789999984 99999999999874
|
| >3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.67 E-value=8.6e-15 Score=165.27 Aligned_cols=262 Identities=15% Similarity=0.161 Sum_probs=180.9
Q ss_pred HHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc-----
Q 001989 214 LNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL----- 288 (985)
Q Consensus 214 ~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~----- 288 (985)
.++++.+|+++|.++.++.+++|+|.++++++.++ |+|+++...|+++...++. .|++++.++.
T Consensus 64 ~~l~~~la~~~~~~~~~i~~~~g~t~al~~~~~~~-------d~vi~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~ 132 (361)
T 3ftb_A 64 RRLNKSIENYLKLKDIGIVLGNGASEIIELSISLF-------EKILIIVPSYAEYEINAKK----HGVSVVFSYLDENMC 132 (361)
T ss_dssp HHHHHHHHHHHTCCSCEEEEESSHHHHHHHHHTTC-------SEEEEEESCCTHHHHHHHH----TTCEEEEEECCTTSC
T ss_pred HHHHHHHHHHhCCCcceEEEcCCHHHHHHHHHHHc-------CcEEEecCChHHHHHHHHH----cCCeEEEeecCcccC
Confidence 46789999999998888999999997666544322 8999999999998888754 4888887764
Q ss_pred ---hhhhc-cCCCEeEEEEEcC-CCCeeec---cHHHHHHHHHhCCcEEEEEecCccccCC-------CCCCcccceEEE
Q 001989 289 ---KDIDY-KSGDVCGVLVQYP-GTEGEVL---DYGDFIKNAHANGVKVVMATDLLALTIL-------KPPGELGADIVV 353 (985)
Q Consensus 289 ---~~l~~-l~~~t~~V~v~~p-n~~G~v~---di~~I~~~a~~~galliV~a~~~~lg~l-------~~~~~~GaDi~v 353 (985)
+++++ +++ +++|++.+| |.+|.+. ++++|+++|+++|+++++|. ..+.... ...+..+.++++
T Consensus 133 ~~~~~l~~~l~~-~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De-~~~~~~~~~~~~~~~~~~~~~~~i~~ 210 (361)
T 3ftb_A 133 IDYEDIISKIDD-VDSVIIGNPNNPNGGLINKEKFIHVLKLAEEKKKTIIIDE-AFIEFTGDPSSSFVGEIKNYSCLFII 210 (361)
T ss_dssp CCHHHHHHHTTT-CSEEEEETTBTTTTBCCCHHHHHHHHHHHHHHTCEEEEEC-SSGGGTCCTTSSSGGGTTTCSSEEEE
T ss_pred CCHHHHHHhccC-CCEEEEeCCCCCCCCCCCHHHHHHHHHHhhhcCCEEEEEC-cchhhcCCcccchhHhcccCCCEEEE
Confidence 35666 777 999999998 7899886 47778888889999999953 3331111 112334556778
Q ss_pred ecC-ccccccCCCCCCcEEEEE-EchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHH
Q 001989 354 GSA-QRFGVPMGYGGPHAAFLA-TSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMA 431 (985)
Q Consensus 354 ~s~-k~lg~P~~~GGP~~G~l~-~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~a 431 (985)
+|. |.++.| |-.+|++. .++++.+.+... . ...+.| .+ +..+
T Consensus 211 ~s~sK~~~~~----G~r~g~~~~~~~~~~~~~~~~----------~----------------~~~~~~-----~~-~~~~ 254 (361)
T 3ftb_A 211 RAMTKFFAMP----GIRFGYGITNNKEIAAKIKAK----------Q----------------NPWNIN-----CF-AEMA 254 (361)
T ss_dssp EESSSTTSCG----GGCCEEEEESCHHHHHHHHTT----------S----------------CTTCSC-----HH-HHHH
T ss_pred eeChhhcCCC----CcceeEEEeCCHHHHHHHHhh----------C----------------CCCCCC-----HH-HHHH
Confidence 886 877532 33468877 677766554110 0 001111 11 1111
Q ss_pred HHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeE-EcCCCCcceEEEecCC--HHHHHHHHHHcCceeeee------
Q 001989 432 AMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVE-VQGLPFFDTVKVKCAD--AHAIASAAYKIEMNLRVV------ 502 (985)
Q Consensus 432 a~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~-~~~~~~~~~~~~~~~~--~~~v~~~L~~~GI~~~~~------ 502 (985)
+. ..+-..+.++++.++..++.+++++.|+++++++ +..+ ...-+.+..++ ..++.+.|.++||.+...
T Consensus 255 ~~-~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~l~~~gi~v~~g~~~~~~ 332 (361)
T 3ftb_A 255 AI-NCLKDTNYIEESLLWIKKERKRFIEELNKIGFIKRVFSP-HANFVLCRLENISGEKLYDSLLKEDIVIRRCCNFIGL 332 (361)
T ss_dssp HH-HTSSCHHHHHHHHHHHHHHHHHHHHHHHHSSSEEEEECC-SSSEEEEEESSSCHHHHHHHHHTTTEECEECTTSTTC
T ss_pred HH-HHhcCHHHHHHHHHHHHHHHHHHHHHHHhCCCCceecCC-CCeEEEEEcCCCCHHHHHHHHHHCCeEEeeCccCCCC
Confidence 11 1122345678899999999999999999985487 6532 12234455553 889999999999988642
Q ss_pred cCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 503 DSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 503 ~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
.++.+|++++ +.+|+|+++++|..
T Consensus 333 ~~~~iRis~~---~~~~~~~l~~~l~~ 356 (361)
T 3ftb_A 333 DDSFVRFAIK---DEKKNTKFLRALKG 356 (361)
T ss_dssp CTTEEEEECC---CHHHHHHHHHHHHH
T ss_pred CCCEEEEEcC---CHHHHHHHHHHHHH
Confidence 2578999987 88999999998863
|
| >3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=8.3e-16 Score=186.89 Aligned_cols=273 Identities=13% Similarity=0.097 Sum_probs=182.3
Q ss_pred HHHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeC---
Q 001989 211 ESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSD--- 287 (985)
Q Consensus 211 ~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~--- 287 (985)
..+.++|+.+|+++|++.+ +.+.+|+|++..++++++. ++||+||+++.+|.|+..+++. .|.++++++
T Consensus 195 g~i~eaE~~lA~~fGa~~a-~~v~nGts~An~~ai~al~---~pGD~VLv~r~~H~S~~~~l~l----sGa~pv~v~~~~ 266 (715)
T 3n75_A 195 GPHKEAEQYIARVFNADRS-YMVTNGTSTANKIVGMYSA---PAGSTILIDRNCHKSLTHLMMM----SDVTPIYFRPTR 266 (715)
T ss_dssp THHHHHHHHHHHHHTCSEE-EEESSHHHHHHHHHHHHHC---CTTCEEEEESSCCHHHHHHHHH----SCCEEEEECCCB
T ss_pred HHHHHHHHHHHHHhCCCCc-eEECcHHHHHHHHHHHHhC---CCCCEEEECCCccHHHHHHHHH----cCCEEEEEeccc
Confidence 4578899999999999863 2234555677777776652 3899999999999999998753 577887765
Q ss_pred ---------------chhhhc-cC--CCEe---EEEEEcCCCCeeeccHHHHHHHHHhCCcEEEEEecCccccC-----C
Q 001989 288 ---------------LKDIDY-KS--GDVC---GVLVQYPGTEGEVLDYGDFIKNAHANGVKVVMATDLLALTI-----L 341 (985)
Q Consensus 288 ---------------~~~l~~-l~--~~t~---~V~v~~pn~~G~v~di~~I~~~a~~~galliV~a~~~~lg~-----l 341 (985)
+++|++ +. ++++ +|++++||++|.+.|+++|+++|+.++ ++|| +.++.++ +
T Consensus 267 ~~~gi~~~i~~~~~d~e~Le~~l~~~~~~k~p~~vivt~pn~~G~v~dl~~I~ela~~~~--livD-EAH~~~~~f~~~~ 343 (715)
T 3n75_A 267 NAYGILGGIPQSEFQHATIAKRVKETPNATWPVHAVITNSTYDGLLYNTDFIKKTLDVKS--IHFD-SAWVPYTNFSPIY 343 (715)
T ss_dssp CTTCCBCCCCGGGGSHHHHHHHHHHSTTCCSCSEEEEESSCTTSEEECHHHHHHHCCCSE--EEEE-CTTCTTGGGSGGG
T ss_pred cccccccCcccccCCHHHHHHHHhhCcCccCceEEEEECCCCCCccCCHHHHHHHhCcCc--EEEc-cccccccccCCcc
Confidence 334555 43 4455 899999999999999999999998763 5674 3444322 1
Q ss_pred C--CCCccc--ceEE---EecC-ccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccc
Q 001989 342 K--PPGELG--ADIV---VGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRR 413 (985)
Q Consensus 342 ~--~~~~~G--aDi~---v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irr 413 (985)
. .+...| +|++ ++|. |+|++|. ++|+++++++..+.. + +
T Consensus 344 ~~~~al~~g~~aD~vii~~~S~hKtL~glt-----qgs~i~v~~~i~~~~----------------~--------~---- 390 (715)
T 3n75_A 344 EGKCGMSGGRVEGKVIYETQSTHKLLAAFS-----QASMIHVKGDVNEET----------------F--------N---- 390 (715)
T ss_dssp TTSSTTSSSCCTTCEEEEEECHHHHSSCCT-----TCEEEEEESCCCHHH----------------H--------H----
T ss_pred ccccccccCcCCCEEEEEEecccccccCCC-----CeeEEEeCchhhHHH----------------H--------H----
Confidence 1 122334 7876 8887 8776432 458888875411000 0 0
Q ss_pred cccCCCccchhHHHHHHHHHH--HHHhCc-chHHHHHHHHHHHHHHHHHHHhcCCC------eEEcCCC-----------
Q 001989 414 DKATSNICTAQALLANMAAMY--AVYHGP-EGLKTIAQRVHGLAGTFALGLKKLGT------VEVQGLP----------- 473 (985)
Q Consensus 414 e~atsni~t~~~l~a~~aa~~--l~~~g~-~Gl~~i~~~~~~~a~~l~~~L~~~g~------~~~~~~~----------- 473 (985)
++...+.|+++.+.++|++- ..++.. +| +++.++..+++.+++++|+++++ ++++.+.
T Consensus 391 -~~~~~~~STSpsy~~~AsldaA~~~~~~~~g-~~~~~~l~~~a~~~r~~L~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (715)
T 3n75_A 391 -EAYMMHTTTSPHYGIVASTETAAAMMKGNAG-KRLINGSIERAIKFRKEIKRLRTESDGWFFDVWQPDHIDTTECWPLR 468 (715)
T ss_dssp -HHHHHTSCSSCCHHHHHHHHHHHHHHSHHHH-HHHHHHHHHHHHHHHHHHHHHHHHSSSCCCEESSCSCCCSCSCEECC
T ss_pred -HHHHhhcCCCchHHHHHHHHHHHHHHHhhcc-HHHHHHHHHHHHHHHHHHHHhhhhcccceeeccCcccccchhhhccC
Confidence 00001111122223333331 234442 34 55789999999999999987632 3544210
Q ss_pred ----------------Ccc--eEEEecC-----------C--HHHHHHHHHHcCceeeeecCCeEEEEeccCCCHHHHHH
Q 001989 474 ----------------FFD--TVKVKCA-----------D--AHAIASAAYKIEMNLRVVDSNTVTASFDETTTLEDVDK 522 (985)
Q Consensus 474 ----------------~~~--~~~~~~~-----------~--~~~v~~~L~~~GI~~~~~~~~~lris~t~~~t~edId~ 522 (985)
.++ .+++.++ + +.++.+.|+++||.++..+...+++-++..+|++++++
T Consensus 469 ~~~~w~gf~~~~~~~~~~Dp~Kl~i~~~~~~~~G~~~~~Gi~g~~~~~~L~~~~I~~E~~d~~~vl~l~s~g~~~~~~~~ 548 (715)
T 3n75_A 469 SDSTWHGFKNIDNEHMYLDPIKVTLLTPGMEKDGTMSDFGIPASIVAKYLDEHGIVVEKTGPYNLLFLFSIGIDKTKALS 548 (715)
T ss_dssp TTCCTTCCTTCCSSSEEECTTEEEEECSCBCTTSCBCSSCCCHHHHHHHHHHTTCCCSEEETTEEEEECCTTCCHHHHHH
T ss_pred cccccccccccccCcccCCCeEEEEEcCCCCCCCccccCCCcHHHHHHHHHHCCCEEEecCCCcEEEEeCCCCCHHHHHH
Confidence 022 2555543 3 57899999999999998888999999999999999999
Q ss_pred HHHHHhC
Q 001989 523 LFIVFAG 529 (985)
Q Consensus 523 li~aL~~ 529 (985)
|+++|.+
T Consensus 549 L~~aL~~ 555 (715)
T 3n75_A 549 LLRALTD 555 (715)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999974
|
| >2oga_A Transaminase; PLP-dependent enzyme, desosamine, deoxysugars, antibiotics, hydrolase; HET: PGU; 2.05A {Streptomyces venezuelae} PDB: 2oge_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=6.2e-15 Score=169.47 Aligned_cols=279 Identities=13% Similarity=0.064 Sum_probs=182.8
Q ss_pred HHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc---
Q 001989 212 SLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL--- 288 (985)
Q Consensus 212 ~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~--- 288 (985)
...++++.+|+++|.+ +..++.+||.+++.++.+++. ++||+|+++...|+++...++. .|++++.++.
T Consensus 64 ~~~~l~~~la~~~~~~--~~v~~~~Gt~a~~~~l~~~~~--~~gd~vl~~~~~~~~~~~~~~~----~g~~~~~~~~~~~ 135 (399)
T 2oga_A 64 ELEGFEAEFAAYCETD--HAVGVNSGMDALQLALRGLGI--GPGDEVIVPSHTYIASWLAVSA----TGATPVPVEPHED 135 (399)
T ss_dssp HHHHHHHHHHHHTTSS--EEEEESCHHHHHHHHHHHTTC--CTTCEEEEESSSCTHHHHHHHH----TTCEEEEECBCSS
T ss_pred hHHHHHHHHHHHHCCC--eEEEecCHHHHHHHHHHHhCC--CCcCEEEECCCccHHHHHHHHH----CCCEEEEEecCCC
Confidence 3456788999999987 467788888877777666533 3789999999999998887753 5888887754
Q ss_pred ------hhhhc-cCCCEeEEEEEcCCCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCCCCCccc--ceEEEecC---
Q 001989 289 ------KDIDY-KSGDVCGVLVQYPGTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKPPGELG--ADIVVGSA--- 356 (985)
Q Consensus 289 ------~~l~~-l~~~t~~V~v~~pn~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~~~~~~G--aDi~v~s~--- 356 (985)
++|++ +++++++|+++ |.+|.+.|+++|.++|+++|+++++| +..+.+.......++ .|+++.|.
T Consensus 136 ~~~~d~~~l~~~i~~~~~~v~~~--n~tG~~~~l~~i~~l~~~~~~~li~D-ea~~~g~~~~~~~~~~~~di~~~S~~~s 212 (399)
T 2oga_A 136 HPTLDPLLVEKAITPRTRALLPV--HLYGHPADMDALRELADRHGLHIVED-AAQAHGARYRGRRIGAGSSVAAFSFYPG 212 (399)
T ss_dssp SSSBCHHHHHHHCCTTEEEECCB--CGGGCCCCHHHHHHHHHHHTCEECEE-CTTCTTCEETTEETTCTTCEEEEECCTT
T ss_pred CCCcCHHHHHHhcCCCCeEEEEe--CCcCCccCHHHHHHHHHHcCCEEEEE-CcccccCccCCeecccccCEEEEeCCCC
Confidence 34555 77889988865 45899999999999999999999995 344554322222345 69999995
Q ss_pred ccccccCCCCCCcEEEEEEc-hhhHhcCCCc-eeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHH
Q 001989 357 QRFGVPMGYGGPHAAFLATS-QEYKRMMPGR-IVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMY 434 (985)
Q Consensus 357 k~lg~P~~~GGP~~G~l~~~-~~~~~~lp~~-~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~ 434 (985)
|.|+.| | + +|++.++ +++.+.+... ..|+. ..|.. ...+...-.+.....+..+++
T Consensus 213 K~~~~~---G-~-~g~~~~~~~~~~~~l~~~~~~g~~------~~~~~----------~~~g~~~~~~~~~~a~~~~~l- 270 (399)
T 2oga_A 213 KNLGCF---G-D-GGAVVTGDPELAERLRMLRNYGSR------QKYSH----------ETKGTNSRLDEMQAAVLRIRL- 270 (399)
T ss_dssp SSSCCS---S-C-CEEEEESCHHHHHHHHHHHBTTCS------STTCC----------CSCCCBCCCCHHHHHHHHHHH-
T ss_pred ccCCcC---C-c-eEEEEeCCHHHHHHHHHHHhcCcc------ccccc----------cccccCCCcCHHHHHHHHHHH-
Confidence 766422 2 2 4677775 6766554211 11110 00100 001111111111111111111
Q ss_pred HHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCC-C----cceEEEecCCHHHHHHHHHHcCceeeeec------
Q 001989 435 AVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLP-F----FDTVKVKCADAHAIASAAYKIEMNLRVVD------ 503 (985)
Q Consensus 435 l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~-~----~~~~~~~~~~~~~v~~~L~~~GI~~~~~~------ 503 (985)
+.++++.++..++++++.+.|+++.++++...+ . +..+.+...+..++.+.|.++||.++...
T Consensus 271 ------~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~~~~~~~~~ 344 (399)
T 2oga_A 271 ------AHLDSWNGRRSALAAEYLSGLAGLPGIGLPVTAPDTDPVWHLFTVRTERRDELRSHLDARGIDTLTHYPVPVHL 344 (399)
T ss_dssp ------HTHHHHHHHHHHHHHHHHHHTTTCTTCBCCCCCTTEECCCSSEEEECSSHHHHHHHHHHTTBCCBCSCSSCGGG
T ss_pred ------HHHHHHHHHHHHHHHHHHHHhccCCCccccCCCCCCcceeEEEEEECCCHHHHHHHHHHCCCceecCCCCcccc
Confidence 235667778888999999999988337764222 1 11244433348889999999999875422
Q ss_pred ---------------------CCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 504 ---------------------SNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 504 ---------------------~~~lris~t~~~t~edId~li~aL~~ 529 (985)
.+.+|++++.++|++|+++++++|.+
T Consensus 345 ~~~~~~~~~~~~~~p~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~ 391 (399)
T 2oga_A 345 SPAYAGEAPPEGSLPRAESFARQVLSLPIGPHLERPQALRVIDAVRE 391 (399)
T ss_dssp SHHHHTTSCCTTSCHHHHHHHHHEEEECCSTTCCHHHHHHHHHHHHH
T ss_pred chhhcccCCCCCCChhHHHHHhCEEEccCCCCCCHHHHHHHHHHHHH
Confidence 14699999999999999999999974
|
| >1rv3_A Serine hydroxymethyltransferase, cytosolic; one-carbon metabolism; HET: GLY PLP; 2.40A {Oryctolagus cuniculus} SCOP: c.67.1.4 PDB: 1rv4_A* 1rvu_A* 1rvy_A* 1ls3_A* 1cj0_A* 1bj4_A* 1eji_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=3e-16 Score=185.31 Aligned_cols=292 Identities=11% Similarity=0.011 Sum_probs=186.5
Q ss_pred HHHHHHHHHHHHHHhcCCCCc----ceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhh----cCCC
Q 001989 209 RLESLLNFQTMIADLTGLPMS----NASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRA----DGFD 280 (985)
Q Consensus 209 ~l~~i~e~q~~ia~L~g~~~~----~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a----~~~g 280 (985)
.-+...++++.+++++|++.. ++.+++|+ ++..+++.++ + ++||+|++++..|+++...+.... ...|
T Consensus 88 ~~~le~~~~~~~a~~~g~~~~~~~~~V~~~sGs-~an~~~~~al-l--~pGD~Vl~~~~~~~~~~~~~~~~~~~~v~~~G 163 (483)
T 1rv3_A 88 IDELETLCQKRALQAYGLDPQCWGVNVQPYSGS-PANFAVYTAL-V--EPHGRIMGLDLPDGGHLTHGFMTDKKKISATS 163 (483)
T ss_dssp HHHHHHHHHHHHHHHTTCCTTTEEEECCCSSHH-HHHHHHHHHH-T--CTTCEEEEECGGGTCCGGGCCBCSSCBCSHHH
T ss_pred HHHHHHHHHHHHHHHhCCCcccCceEEEECCcH-HHHHHHHHHh-c--CCCCEEEEecCccCcCcchhhhhcccCccccc
Confidence 345556777999999999863 35555544 6666656665 3 389999999999988765432100 0011
Q ss_pred --eEEEEe---------Cchhhhc-cC-CCEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCC-CCC
Q 001989 281 --IKVVVS---------DLKDIDY-KS-GDVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILK-PPG 345 (985)
Q Consensus 281 --i~v~~v---------~~~~l~~-l~-~~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~-~~~ 345 (985)
++++.+ |+++|++ +. +++++|++ ++ |+. .+.|+++|+++|+++|+++++|. .++.|+.. ...
T Consensus 164 ~~~~~v~~~~~~~~~~iD~d~le~~i~~~~tklIi~-~~sn~~-~~~dl~~i~~ia~~~g~~livD~-ah~~g~~~~~~~ 240 (483)
T 1rv3_A 164 IFFESMAYKVNPDTGYIDYDRLEENARLFHPKLIIA-GTSCYS-RNLDYGRLRKIADENGAYLMADM-AHISGLVVAGVV 240 (483)
T ss_dssp HHSEEEEECBCTTTCSBCHHHHHHHHHHHCCSEEEE-CCSSCC-SCCCHHHHHHHHHHTTCEEEEEC-TTTHHHHHHTSS
T ss_pred ceEEEEECccccCCCcCCHHHHHHHHhhcCCcEEEE-eCCcCC-CcCCHHHHHHHHHHcCCEEEEEc-cchhcccccCCC
Confidence 344433 3356666 65 78999998 65 555 88899999999999999999953 33433221 111
Q ss_pred cc---cceEEEecC-ccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccc--cccCCC
Q 001989 346 EL---GADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRR--DKATSN 419 (985)
Q Consensus 346 ~~---GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irr--e~atsn 419 (985)
.+ ++|++++|+ |+|+ ||..|++++++++.. +. +..|.. ..|. +..+-+...+ ..||++
T Consensus 241 ~~p~~~~div~~s~~K~l~------GprgG~i~~~~~~~~-~~-~~~g~~------~~y~--~~~~~~~~~~~~~~g~~~ 304 (483)
T 1rv3_A 241 PSPFEHCHVVTTTTHKTLR------GCRAGMIFYRRGVRS-VD-PKTGKE------ILYN--LESLINSAVFPGLQGGPH 304 (483)
T ss_dssp CCGGGTCSEEEEESSGGGC------CCSCEEEEEECSBCC---------C------CBCC--HHHHHHHHHTTTTCCSCC
T ss_pred CCCCCCCcEEEecCcccCC------CCCceEEEEcchhhh-hc-cccCcc------hhhH--HHHHhhhhcCCcccCCcc
Confidence 22 799999998 7664 344489999876542 22 111110 0011 1000000000 124444
Q ss_pred ccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCC-CCcceEEEecC--C--HHHHHHHHHH
Q 001989 420 ICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGL-PFFDTVKVKCA--D--AHAIASAAYK 494 (985)
Q Consensus 420 i~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~-~~~~~~~~~~~--~--~~~v~~~L~~ 494 (985)
. ..+.++.+++ ......+++++.++..++++++.+.|.++| ++++.+ .....+.+.+. + ..++.+.|.+
T Consensus 305 ~---~~iaal~~Al--~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~~~~~~~v~~~~~g~~~~~~~~~L~~ 378 (483)
T 1rv3_A 305 N---HAIAGVAVAL--KQAMTPEFKEYQRQVVANCRALSAALVELG-YKIVTGGSDNHLILVDLRSKGTDGGRAEKVLEA 378 (483)
T ss_dssp H---HHHHHHHHHH--HHHTSHHHHHHHHHHHHHHHHHHHHHHHTT-CEEGGGSCSSSEEEEEGGGGTCCHHHHHHHHHH
T ss_pred H---HHHHHHHHHH--HHHhChhHHHHHHHHHHHHHHHHHHHHhcC-CEeccCCCCCceEEEeccCCCCCHHHHHHHHHh
Confidence 3 3444555554 455556889999999999999999999997 998743 11122334432 2 7788899999
Q ss_pred cCceee----ee-----cCCeEEEEeccCCC----HHHHHHHHHHHhC
Q 001989 495 IEMNLR----VV-----DSNTVTASFDETTT----LEDVDKLFIVFAG 529 (985)
Q Consensus 495 ~GI~~~----~~-----~~~~lris~t~~~t----~edId~li~aL~~ 529 (985)
.||.+. +. ..+.+|+++..++| ++|+++++++|..
T Consensus 379 ~gI~v~~~~~pg~~~~~~~~~iRis~~~~~t~g~~~edi~~~~~~l~~ 426 (483)
T 1rv3_A 379 CSIACNKNTCPGDKSALRPSGLRLGTPALTSRGLLEKDFQKVAHFIHR 426 (483)
T ss_dssp TTEECEEECCSSCSCTTSCCEEEEECHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCcEEecCCCCCCCcCCCCceEEeecCCcccCCCCHHHHHHHHHHHHH
Confidence 999876 21 24689999998888 9999999999874
|
| >2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding enzyme, lysine biosynthesis, aminotransferase, S genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.67 E-value=1.7e-14 Score=166.43 Aligned_cols=269 Identities=13% Similarity=0.094 Sum_probs=179.7
Q ss_pred HHHHHHHh----cCC--CCc-ceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeC-
Q 001989 216 FQTMIADL----TGL--PMS-NASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSD- 287 (985)
Q Consensus 216 ~q~~ia~L----~g~--~~~-~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~- 287 (985)
+++.+|++ +|. ++. ++.+++|+|.+++.++.++ . ++||+|+++...|+++...++. .|++++.++
T Consensus 67 l~~~la~~~~~~~g~~~~~~~~v~~t~g~~~al~~~~~~~-~--~~gd~Vl~~~~~y~~~~~~~~~----~g~~~~~v~~ 139 (411)
T 2o0r_A 67 LRRAIAAQRRRHFGVDYDPETEVLVTVGATEAIAAAVLGL-V--EPGSEVLLIEPFYDSYSPVVAM----AGAHRVTVPL 139 (411)
T ss_dssp HHHHHHHHHHHHHCCCCCTTTSEEEEEHHHHHHHHHHHHH-C--CTTCEEEEEESCCTTHHHHHHH----TTCEEEEEEC
T ss_pred HHHHHHHHHHHHcCCCCCCCceEEEeCCHHHHHHHHHHHh-c--CCCCEEEEeCCCcHhHHHHHHH----cCCEEEEeec
Confidence 34455554 474 455 7889999998888776654 2 3789999999999998877643 466766654
Q ss_pred ----------chhhhc-cCCCEeEEEEEcC-CCCeeecc---HHHHHHHHHhCCcEEEEEecCccccCCC-----C----
Q 001989 288 ----------LKDIDY-KSGDVCGVLVQYP-GTEGEVLD---YGDFIKNAHANGVKVVMATDLLALTILK-----P---- 343 (985)
Q Consensus 288 ----------~~~l~~-l~~~t~~V~v~~p-n~~G~v~d---i~~I~~~a~~~galliV~a~~~~lg~l~-----~---- 343 (985)
+++|++ +++++++|++++| |++|.+.| +++|+++|+++|+++++|. ..+.+... +
T Consensus 140 ~~~~~~~~~d~~~l~~~l~~~~~~v~l~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De-~~~~~~~~g~~~~~~~~~ 218 (411)
T 2o0r_A 140 VPDGRGFALDADALRRAVTPRTRALIINSPHNPTGAVLSATELAAIAEIAVAANLVVITDE-VYEHLVFDHARHLPLAGF 218 (411)
T ss_dssp EEETTEEECCHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEC-TTTTCBCTTCCCCCGGGS
T ss_pred cccccCCCCCHHHHHHhhccCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEc-cccccccCCCCCcChhhc
Confidence 345666 7788999999988 78999865 6999999999999999953 33322111 1
Q ss_pred CCcccceEEEecC-ccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccc
Q 001989 344 PGELGADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICT 422 (985)
Q Consensus 344 ~~~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t 422 (985)
+..++.|++++|. |.|+.| |--+|++++++++++.+.... . ....+.|.
T Consensus 219 ~~~~~~~i~~~s~sK~~~~~----G~r~G~~~~~~~~~~~l~~~~----------~--------------~~~~~~~~-- 268 (411)
T 2o0r_A 219 DGMAERTITISSAAKMFNCT----GWKIGWACGPAELIAGVRAAK----------Q--------------YLSYVGGA-- 268 (411)
T ss_dssp TTTGGGEEEEEEHHHHTTCT----TTCEEEEECCHHHHHHHHHHH----------H--------------HHTSCCCT--
T ss_pred cCCCCCEEEEeechhhcCCc----cceEEEEeeCHHHHHHHHHHH----------h--------------hccCCCCh--
Confidence 1136889999998 766422 123799999888776541100 0 00011111
Q ss_pred hhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCCCcceEEEecC-----CHHHHHHHHH-HcC
Q 001989 423 AQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDTVKVKCA-----DAHAIASAAY-KIE 496 (985)
Q Consensus 423 ~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~~~~~~~~~~~-----~~~~v~~~L~-~~G 496 (985)
....++.+++ .. +.+.++++.++..++.+++.+.|++.| +++..+....-+.+..+ +..++.++|. ++|
T Consensus 269 -~~~~a~~~~l--~~-~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~g 343 (411)
T 2o0r_A 269 -PFQPAVALAL--DT-EDAWVAALRNSLRARRDRLAAGLTEIG-FAVHDSYGTYFLCADPRPLGYDDSTEFCAALPEKVG 343 (411)
T ss_dssp -THHHHHHHHH--HH-CHHHHHHHHHHHHHHHHHHHHHHHHHT-CEECCCCBSSEEEEECGGGTCCCHHHHHHHHHHHHS
T ss_pred -HHHHHHHHHH--hC-ChHHHHHHHHHHHHHHHHHHHHHHHcC-CEecCCCeeEEEEEecCCCCCCCHHHHHHHHHHhCC
Confidence 1222222222 22 356788899999999999999999886 88764321112334443 2678888886 579
Q ss_pred ceeeee-----------------cCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 497 MNLRVV-----------------DSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 497 I~~~~~-----------------~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
|.+... ..+.+|+++. ++++||+++++.|.+
T Consensus 344 i~v~~g~~f~~~~~~~~~~~~~~~~~~iRis~~--~~~e~i~~~~~~l~~ 391 (411)
T 2o0r_A 344 VAAIPMSAFCDPAAGQASQQADVWNHLVRFTFC--KRDDTLDEAIRRLSV 391 (411)
T ss_dssp EECEEGGGGSCCC--------CCGGGCEEEECC--SCHHHHHHHHHHHGG
T ss_pred EEEcChhhhCCCccccccccccCCCCeEEEEec--CCHHHHHHHHHHHHH
Confidence 987431 1357999986 489999999999974
|
| >3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal 5' phosphat external aldimine, chloroplast, pyridox phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB: 3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A 3eia_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=2.3e-16 Score=183.26 Aligned_cols=293 Identities=11% Similarity=0.052 Sum_probs=172.8
Q ss_pred HHHHHHHHHh----CCCccceecCcHH-HHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCC---------
Q 001989 636 NLGEWLCTIT----GFDSFSLQPNAGA-AGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCG--------- 701 (985)
Q Consensus 636 e~~~~la~l~----G~~~~~~~~~sGa-~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G--------- 701 (985)
++++.+++++ +.+...+.+++|+ ++. ..+ ..+. .++|+|+++.+.|..+...++..|
T Consensus 102 ~l~~~ia~~~~~~~~~~~~~i~~t~G~~~al-~~l---~~l~-----~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~ 172 (432)
T 3ei9_A 102 PLRAAIAKTFYGGLGIGDDDVFVSDGAKCDI-SRL---QVMF-----GSNVTIAVQDPSYPAYVDSSVIMGQTGQFNTDV 172 (432)
T ss_dssp HHHHHHHHHHHTTTTCCGGGEEEESCHHHHH-HHH---HHHH-----CTTCCEEEEESCCTHHHHHHHHHTCSCCEETTT
T ss_pred HHHHHHHHHHHccCCCCcceEEECCChHHHH-HHH---HHHc-----CCCCEEEEeCCCCHHHHHHHHHcCCcccccccc
Confidence 4455555554 6666555544444 444 222 2222 367899999888877766666555
Q ss_pred ---cEEEEEcCCCC--CCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccc--cCHHHHHHHHHHcCCEEEEEcccccc-
Q 001989 702 ---MKIVSVGTDAK--GNINIEELRKAAEANRDNLSTLMVTYP-STHGVYE--EGIDEICKIIHDNGGQVYMDGANMNA- 772 (985)
Q Consensus 702 ---~~vv~v~~d~~--g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~--~di~eI~~la~~~galliVD~a~~~~- 772 (985)
.+++.+|++.+ ...|++. .+++++|++++| |++|.+. .++++|+++|+++|+++++|++|...
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~l~~--------~~~~~~v~l~~p~NPtG~~~~~~~l~~l~~la~~~~~~li~Dea~~~~~ 244 (432)
T 3ei9_A 173 QKYGNIEYMRCTPENGFFPDLST--------VGRTDIIFFCSPNNPTGAAATREQLTQLVEFAKKNGSIIVYDSAYAMYM 244 (432)
T ss_dssp TEETTCEEEECCGGGTTSCCGGG--------CCCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGC
T ss_pred cccCceEEeccCcccCCcCChhh--------CCCCCEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCcEEEEccchHhhc
Confidence 36788888653 2344322 167889999999 5789875 25788888899999999999998522
Q ss_pred ccCCC-C----CCccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcch
Q 001989 773 QVGLT-S----PGYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPW 847 (985)
Q Consensus 773 ~~~l~-~----pg~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~ 847 (985)
.++.. . ++..+.++++.|++|+|+. .|.++|++++++++...-....... ........+.+.
T Consensus 245 ~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~----~G~r~G~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~----- 311 (432)
T 3ei9_A 245 SDDNPRSIFEIPGAEEVAMETASFSNYAGF----TGVRLGWTVIPKKLLYSDGFPVAKD----FNRIICTCFNGA----- 311 (432)
T ss_dssp CSSCCSSGGGSTTGGGTEEEEEESHHHHCT----TTTCCEEEECCTTCBCTTSCBHHHH----HHHHHHHSCCCS-----
T ss_pred cCCCCCChhhcCCCCCeEEEEecchhccCC----cccceEEEEEChHHhhcchHHHHHH----HHHHhccccCCC-----
Confidence 11100 0 1223457889999999964 3678999998876621100000000 000000001111
Q ss_pred hhhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHH
Q 001989 848 GSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKR 926 (985)
Q Consensus 848 g~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~ 926 (985)
+.....++.+++...+.+.+.+..++..++++++.+.|++ ++.+.. +. +..+ +.+.++ +.+..++.+.
T Consensus 312 -~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~-~~-~~~~--~~~~~~------~~~~~~~~~~ 380 (432)
T 3ei9_A 312 -SNISQAGALACLTPEGLEAMHKVIGFYKENTNIIIDTFTSLGYDVYG-GK-NAPY--VWVHFP------NQSSWDVFAE 380 (432)
T ss_dssp -CHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEE-CS-SSSE--EEEECT------TSCHHHHHHH
T ss_pred -CHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHCCceecC-CC-cceE--EEEECC------CCCHHHHHHH
Confidence 1122222223332223344566677788899999999987 555432 22 2222 345654 4567888888
Q ss_pred HHHC-CCccCCC-CC-C-CCCEEEEeccCCCCHHHHHHHHccCChhHHHHh
Q 001989 927 LMDY-GFHGPTM-SW-P-VPGTLMIEPTESESKSWTGIVMLSSPSEKKLHR 973 (985)
Q Consensus 927 L~~~-Gi~~~~~-~~-p-~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~ 973 (985)
|.++ ||.+... .+ + ..+.+||++ ..++++|++ .++.|++--..
T Consensus 381 ll~~~gv~v~~g~~f~~~~~~~iRis~--~~~~e~l~~--~l~rl~~~~~~ 427 (432)
T 3ei9_A 381 ILEKTHVVTTPGSGFGPGGEGFVRVSA--FGHRENILE--ACRRFKQLYKH 427 (432)
T ss_dssp HHHHHCEECEEGGGGCGGGTTEEEEEC--CSCHHHHHH--HHHHHHHHHTT
T ss_pred HHHHCCEEEeCchHhCCCCCCEEEEEe--cCCHHHHHH--HHHHHHHHhhh
Confidence 8765 9987532 22 1 258999997 569999999 66666655443
|
| >4f4e_A Aromatic-amino-acid aminotransferase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: LLP; 1.80A {Burkholderia pseudomallei} PDB: 4eff_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=6.4e-16 Score=178.95 Aligned_cols=273 Identities=14% Similarity=0.109 Sum_probs=167.4
Q ss_pred eecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcC--CCCCCCCHHHHHHHHHhcCC
Q 001989 652 LQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGT--DAKGNINIEELRKAAEANRD 729 (985)
Q Consensus 652 ~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~--d~~g~iD~e~L~~~i~~~~~ 729 (985)
+++++|++|+..++..+. .. .++|+|+++++.|..+...++..|++++.+|+ ++++.+|+++|++++++.++
T Consensus 121 ~~t~G~t~al~~~~~~~~-~~-----~~gd~Vlv~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~ 194 (420)
T 4f4e_A 121 AQALGGTGALKIGADFLR-TL-----NPKAKVAISDPSWENHRALFDMAGFEVVAYPYYDAKTNGVNFDGMLAALNGYEP 194 (420)
T ss_dssp EEEEHHHHHHHHHHHHHH-HH-----CTTCCEEEEESCCHHHHHHHHHTTCCEEEEECEETTTTEECHHHHHHHHTTCCT
T ss_pred EECCccHHHHHHHHHHHH-Hh-----CCCCEEEEeCCCcHhHHHHHHHcCCeEEEeeeeccccCccCHHHHHHHHHhCCC
Confidence 455666666654422211 11 36789999988887777778889999999998 34688999999999986556
Q ss_pred CEEEEEEEcC-CCccccc--cCHHHHHHHHHHcCCEEEEEccccccccCCCC----------CCccCCcEEEeCCccccc
Q 001989 730 NLSTLMVTYP-STHGVYE--EGIDEICKIIHDNGGQVYMDGANMNAQVGLTS----------PGYIGADVCHLNLHKTFC 796 (985)
Q Consensus 730 ~t~~Vvv~~p-n~~G~i~--~di~eI~~la~~~galliVD~a~~~~~~~l~~----------pg~~g~Di~~~s~hK~l~ 796 (985)
+++++++++| |++|.+. .++++|+++|+++|+++++|+++.. + .+.. ++..+.++++.|++|+|+
T Consensus 195 ~~~~v~i~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~y~~-~-~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~ 272 (420)
T 4f4e_A 195 GTIVVLHACCHNPTGVDLNDAQWAQVVEVVKARRLVPFLDIAYQG-F-GESIEADAAAVRLFAAANLNVFVSSSFSKSFS 272 (420)
T ss_dssp TCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTT-S-SSCTTGGGHHHHHHHHTTCCEEEEEECTTTTT
T ss_pred CCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEcccccc-c-cCCcchhhHHHHHHHhcCCCEEEEEeCCccCc
Confidence 7899999988 5799884 2578999999999999999998731 1 1110 112345688889999986
Q ss_pred ccCCCCCCceEEEEE---cccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHh-----cHHHH
Q 001989 797 IPHGGGGPGMGPIGV---KKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMM-----GSKGL 868 (985)
Q Consensus 797 ~p~g~GGPg~G~i~~---~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~l-----g~eGl 868 (985)
+| |.++|++++ ++++...+....... ....+++.+. .++ .++..++... ..+.+
T Consensus 273 ~~----G~RiG~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~--~~~----~~~~~~l~~~~l~~~~~~~~ 334 (420)
T 4f4e_A 273 LY----GERVGALSIITDSKDEAARVLSQLKRV--------IRTNYSNPPT--HGG----AIVAAVLASPELRASWVQEL 334 (420)
T ss_dssp CG----GGCEEEEEEECSSHHHHHHHHHHHHHH--------HHTTTSSCCS--HHH----HHHHHHHHCHHHHHHHHHHH
T ss_pred Cc----CCCcEEEEEEcCCHHHHHHHHHHHHHH--------HhcccCCCCH--HHH----HHHHHHhcCHHHHHHHHHHH
Confidence 43 677999864 223222110000000 0001112111 111 1111222211 12345
Q ss_pred HHHHHHHHHHHHHHHHHhhccC---CeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCCCCCCCEE
Q 001989 869 TEASKIAILNANYMAKRLEKHY---PILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTL 945 (985)
Q Consensus 869 ~~~~~~~~~~a~~l~~~L~~g~---~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~~p~~~~l 945 (985)
++..++..++++++.+.|++.. .+.+..+.+..+ ++ + +.+.+.+.+.|.++||.+.. ..
T Consensus 335 ~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~---~~-~-------~~~~~~~~~~l~~~gI~v~~-------~~ 396 (420)
T 4f4e_A 335 GEMRDRIRAMRNGLVERLKAAGIERDFSFINAQRGMF---SY-S-------GLTSAQVDRLREEFGIYAVS-------TG 396 (420)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCSSCCTHHHHSCSSE---EE-C-------CCCHHHHHHHHHHHCEECCT-------TS
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCceeECCCccEE---EE-e-------CCCHHHHHHHHHhCCEEecC-------CC
Confidence 6666777888899999998621 221111112222 11 1 24567777888888998743 13
Q ss_pred EEeccCCCCHHHHHHHHccCChhHHH
Q 001989 946 MIEPTESESKSWTGIVMLSSPSEKKL 971 (985)
Q Consensus 946 ris~t~~~t~eeId~~~~~~~l~~~~ 971 (985)
|+++.. .+.++|++ +++.|++++
T Consensus 397 Ris~~~-~~~~~i~~--~~~~l~~~l 419 (420)
T 4f4e_A 397 RICVAA-LNTRNLDV--VANAIAAVL 419 (420)
T ss_dssp EEEGGG-CCTTTHHH--HHHHHHHHH
T ss_pred eEEEec-CCHHHHHH--HHHHHHHHh
Confidence 888864 46677999 777777664
|
| >1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB: 1yiy_A* 2r5c_A* 2r5e_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=2.4e-14 Score=165.97 Aligned_cols=267 Identities=10% Similarity=0.002 Sum_probs=179.7
Q ss_pred HHHHHHHh----cCC--CCc-ceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc
Q 001989 216 FQTMIADL----TGL--PMS-NASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL 288 (985)
Q Consensus 216 ~q~~ia~L----~g~--~~~-~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~ 288 (985)
+++.+|++ +|. ++. ++.+++|+|.++++++.++. ++||+|+++...|+.+...++. .|.+++.++.
T Consensus 82 l~~~la~~l~~~~g~~~~~~~~v~~~~g~~~a~~~~~~~~~---~~gd~Vl~~~p~y~~~~~~~~~----~g~~~~~~~~ 154 (429)
T 1yiz_A 82 LVQALSKLYSQLVDRTINPMTEVLVTVGAYEALYATIQGHV---DEGDEVIIIEPFFDCYEPMVKA----AGGIPRFIPL 154 (429)
T ss_dssp HHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHHHHHHHHHC---CTTCEEEEEESCCTTHHHHHHH----TTCEEEEEEC
T ss_pred HHHHHHHHHHHHhCCCCCCcCCEEEecChHHHHHHHHHHhc---CCCCEEEEcCCCchhHHHHHHH----cCCEEEEEeC
Confidence 33444444 474 556 78899999988887776542 3789999999999998887653 4777766543
Q ss_pred ------------------hhhhc-cCCCEeEEEEEcC-CCCeeec---cHHHHHHHHHhCCcEEEEEecCccccCC----
Q 001989 289 ------------------KDIDY-KSGDVCGVLVQYP-GTEGEVL---DYGDFIKNAHANGVKVVMATDLLALTIL---- 341 (985)
Q Consensus 289 ------------------~~l~~-l~~~t~~V~v~~p-n~~G~v~---di~~I~~~a~~~galliV~a~~~~lg~l---- 341 (985)
++|++ +++++++|++++| |.+|.+. ++++|+++|+++|+++++|. ..+....
T Consensus 155 ~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De-~~~~~~~~g~~ 233 (429)
T 1yiz_A 155 KPNKTGGTISSADWVLDNNELEALFNEKTKMIIINTPHNPLGKVMDRAELEVVANLCKKWNVLCVSDE-VYEHMVFEPFE 233 (429)
T ss_dssp BCCCSSSSEEGGGCBCCHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEC-TTTTCBCTTSC
T ss_pred CcccccccccccCcccCHHHHHHHhccCceEEEECCCCCCCCccCCHHHHHHHHHHHHHcCcEEEEec-cccccccCCCC
Confidence 34555 7788999999988 7899987 59999999999999999953 3321111
Q ss_pred -CC----CCcccceEEEecC-ccccccCCCCCCc--EEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccc
Q 001989 342 -KP----PGELGADIVVGSA-QRFGVPMGYGGPH--AAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRR 413 (985)
Q Consensus 342 -~~----~~~~GaDi~v~s~-k~lg~P~~~GGP~--~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irr 413 (985)
.+ ++.++.|+++.+. |.|+ +|| +|++++++++++.+...
T Consensus 234 ~~~~~~~~~~~~~~~~~~s~sK~~~------~~G~r~G~~~~~~~~~~~l~~~--------------------------- 280 (429)
T 1yiz_A 234 HIRICTLPGMWERTITIGSAGKTFS------LTGWKIGWAYGPEALLKNLQMV--------------------------- 280 (429)
T ss_dssp CCCGGGSTTTGGGEEEEEEHHHHHT------CGGGCCEEEESCHHHHHHHHHH---------------------------
T ss_pred CcChhhccCCcCceEEEecchhccC------CCCcceEEEEeCHHHHHHHHHH---------------------------
Confidence 01 1257899999998 7664 244 79999988877654100
Q ss_pred cccCCCccchhH-HHHHHHHHHHHHh----C--cchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCCCcceEEEecC---
Q 001989 414 DKATSNICTAQA-LLANMAAMYAVYH----G--PEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDTVKVKCA--- 483 (985)
Q Consensus 414 e~atsni~t~~~-l~a~~aa~~l~~~----g--~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~~~~~~~~~~~--- 483 (985)
+.....+.+.. ..+..++ +... + .+.++++.++..++.+++.+.|+++| +++..+....-+.++++
T Consensus 281 -~~~~~~~~~~~~~~a~~~~--l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~g~~~~~~~~~~~ 356 (429)
T 1yiz_A 281 -HQNCVYTCATPIQEAIAVG--FETELKRLKSPECYFNSISGELMAKRDYMASFLAEVG-MNPTVPQGGYFMVADWSSLD 356 (429)
T ss_dssp -HHTTTCCCCHHHHHHHHHH--HHHHHTTTTSTTSHHHHHHHHHHHHHHHHHHHHHHHT-CEEEECSBSSEEEEECCSSC
T ss_pred -HhhcccCCChHHHHHHHHH--HhcccccccchHHHHHHHHHHHHHHHHHHHHHHHhCC-CcccCCCcceEEEEEccccc
Confidence 00001111122 2222222 2331 3 55688899999999999999999886 87653211112333432
Q ss_pred -----------C-HHHHHHHHH-HcCceeeee---c--------CCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 484 -----------D-AHAIASAAY-KIEMNLRVV---D--------SNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 484 -----------~-~~~v~~~L~-~~GI~~~~~---~--------~~~lris~t~~~t~edId~li~aL~~ 529 (985)
. ..++.++|. ++||.+... . ++.+|+++. ++++||+++++.|.+
T Consensus 357 ~~~~~~~~~~~~~~~~l~~~l~~~~gv~v~~g~~f~~~~~~~~~~~~iRis~~--~~~e~i~~~l~~l~~ 424 (429)
T 1yiz_A 357 SKVDLTQETDARKDYRFTKWMTKSVGLQGIPPSAFYSEPNKHLGEDFVRYCFF--KKDENLQKAAEILRK 424 (429)
T ss_dssp TTTTCCSSSSSCHHHHHHHHHHHHTSEECBCGGGGSCGGGGGGTTTEEEEECC--SCHHHHHHHHHHHHH
T ss_pred ccccccccccCCCHHHHHHHHHHhCCEEEeCchHhCCCcccCCCCCeEEEEec--CCHHHHHHHHHHHHH
Confidence 2 567888886 789987532 1 478999998 489999999999874
|
| >1ibj_A CBL, cystathionine beta-lyase; PLP-dependent enzyme, methionine biosynthesis, transsulfurat lyase; HET: PLP; 2.30A {Arabidopsis thaliana} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.66 E-value=5.8e-16 Score=181.60 Aligned_cols=163 Identities=19% Similarity=0.206 Sum_probs=124.6
Q ss_pred HHHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHH----HHHCCcEEEEEc
Q 001989 633 MFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPAT----AAMCGMKIVSVG 708 (985)
Q Consensus 633 ~~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~----a~~~G~~vv~v~ 708 (985)
..+++++++++++|.+. .+.+++|++|+.++ ++ . ..++++||+++..|+.+... ++..|++++.+|
T Consensus 134 ~~~~l~~~la~~~g~~~-~i~~~sGt~al~~~---l~-~-----~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~v~~v~ 203 (464)
T 1ibj_A 134 TRDALESLLAKLDKADR-AFCFTSGMAALSAV---TH-L-----IKNGEEIVAGDDVYGGSDRLLSQVVPRSGVVVKRVN 203 (464)
T ss_dssp HHHHHHHHHHHHHTCSE-EEEESSHHHHHHHH---HT-T-----SCTTCEEEEESSCCHHHHHHHHHTSGGGTCEEEEEC
T ss_pred HHHHHHHHHHHHhCCCe-EEEECCHHHHHHHH---HH-H-----hCCCCEEEEECCCchhHHHHHHHHHHHcCCEEEEeC
Confidence 46688999999999874 45567777765332 22 1 24788999988877665432 356799999999
Q ss_pred CCCCCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCccCCcEE
Q 001989 709 TDAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIGADVC 787 (985)
Q Consensus 709 ~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~g~Di~ 787 (985)
.+ |+++|+++++ ++|++|++++| |++|.+. |+++|+++|+++|+++++|++|..+ .+..|..+++|++
T Consensus 204 ~~-----d~~~l~~~i~---~~tk~v~l~~p~NptG~v~-~l~~i~~la~~~gi~livDea~~~g--~~~~~~~~~~div 272 (464)
T 1ibj_A 204 TT-----KLDEVAAAIG---PQTKLVWLESPTNPRQQIS-DIRKISEMAHAQGALVLVDNSIMSP--VLSRPLELGADIV 272 (464)
T ss_dssp TT-----SHHHHHHHCC---SSEEEEEECSSCTTTCCCC-CHHHHHHHHHTTTCEEEEECTTTCT--TTCCGGGTTCSEE
T ss_pred CC-----CHHHHHHHhc---cCceEEEEeCCCCCCCEee-cHHHHHHHHHHcCCEEEEECCCccc--ccCChhhcCCEEE
Confidence 74 8999999997 78999999999 4699998 8999999999999999999998533 2234556789999
Q ss_pred EeCCcccccccCCCCCCceEEEEEcc-cccCcC
Q 001989 788 HLNLHKTFCIPHGGGGPGMGPIGVKK-HLAPFL 819 (985)
Q Consensus 788 ~~s~hK~l~~p~g~GGPg~G~i~~~~-~l~~~l 819 (985)
+.|+||+|+.| +|..+|++++++ ++.+.+
T Consensus 273 ~~S~sK~~~g~---~Gl~~G~l~~~~~~l~~~l 302 (464)
T 1ibj_A 273 MHSATKFIAGH---SDVMAGVLAVKGEKLAKEV 302 (464)
T ss_dssp EEETTTTTTCS---SCCCCEEEEECSHHHHHHH
T ss_pred EECCcccccCC---CCCcEEEEEEChHHHHHHH
Confidence 99999998532 233458999885 555443
|
| >2fyf_A PSAT, phosphoserine aminotransferase; PLP-dependent enzyme, dimer, structural genomics; HET: PLP; 1.50A {Mycobacterium tuberculosis} PDB: 3vom_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=5.8e-15 Score=169.60 Aligned_cols=293 Identities=12% Similarity=0.011 Sum_probs=188.0
Q ss_pred HHHHHHHHHHHHHhcCCCC-cceee-ccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHH-HHHHhhcCCCeEEEEe
Q 001989 210 LESLLNFQTMIADLTGLPM-SNASL-LDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTID-ICITRADGFDIKVVVS 286 (985)
Q Consensus 210 l~~i~e~q~~ia~L~g~~~-~~~sl-~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~-~~~~~a~~~gi~v~~v 286 (985)
.+.+.++++.+++++|.+. .++.+ ++|+|.++++++.++ .. +| .++++...|..... ....+ ..|.+++.+
T Consensus 77 ~~~~~~~~~~la~~~g~~~~~~i~~~t~g~t~al~~~~~~l-~~--~g-v~~v~~~~~~~~~~~~~~~~--~~g~~~~~v 150 (398)
T 2fyf_A 77 KNLVGRVRSGLAELFSLPDGYEVILGNGGATAFWDAAAFGL-ID--KR-SLHLTYGEFSAKFASAVSKN--PFVGEPIII 150 (398)
T ss_dssp HHHHHHHHHHHHHHTTCCTTCEEEEEETCHHHHHHHHHHHT-CS--SC-EEEEECSHHHHHHHHHHHHC--TTSCCCEEE
T ss_pred HHHHHHHHHHHHHHhCCCCCceEEEeCCchhHHHHHHHHHh-cC--CC-eEEEeCCHHHHHHHHHHHHh--CCCCceEEE
Confidence 4667789999999999984 47777 899998888777665 22 44 34456666643322 22221 226666666
Q ss_pred Cchh--h-hc-cCCCEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCCCCCcccceEEEecC-cccc
Q 001989 287 DLKD--I-DY-KSGDVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKPPGELGADIVVGSA-QRFG 360 (985)
Q Consensus 287 ~~~~--l-~~-l~~~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~~~~~~GaDi~v~s~-k~lg 360 (985)
+.++ . .. ++++|++|++.+| |.+|.+.|+++|.++ +|+++++|. ..+.+....+ -.++|++++++ |.++
T Consensus 151 ~~~~g~~~~~~i~~~~~~v~~~~~~nptG~~~~~~~i~~~---~~~~vivD~-a~~~~~~~~~-~~~~di~~~s~sK~~~ 225 (398)
T 2fyf_A 151 TSDPGSAPEPQTDPSVDVIAWAHNETSTGVAVAVRRPEGS---DDALVVIDA-TSGAGGLPVD-IAETDAYYFAPQKNFA 225 (398)
T ss_dssp ECCTTCCCCCCCCTTCSEEEEESEETTTTEECCCCCCTTC---C-CEEEEEC-TTTTTTSCCC-GGGCSEEEECTTSTTC
T ss_pred ecCCCCCCCccccCCCCEEEEeCcCCCcceecchHHhhhh---cCCeEEEEe-ccccCCcccC-cccCcEEEEecCcccC
Confidence 5431 1 11 5678999999887 789999999999887 799999953 4454433211 12589999998 7664
Q ss_pred ccCCCCCCcEEEEEEchhhHhcCCCcee-eeeecCCCCcceeeecccccccc--cccccCCCccchhHHHHHHHHHHHHH
Q 001989 361 VPMGYGGPHAAFLATSQEYKRMMPGRIV-GVSIDSSGKPALRVAMQTREQHI--RRDKATSNICTAQALLANMAAMYAVY 437 (985)
Q Consensus 361 ~P~~~GGP~~G~l~~~~~~~~~lp~~~v-G~t~d~~g~~~~~l~l~tre~~i--rre~atsni~t~~~l~a~~aa~~l~~ 437 (985)
.| +++|++++++++++++..... |. ..+.| +......+.. .+..+|+|+ ....++.+++ .+
T Consensus 226 ~~-----gg~g~l~~~~~~~~~l~~~~~~~~-----~~~~~-~~~~~~~~~~~~~~~~~t~~~---~~~~a~~~al--~~ 289 (398)
T 2fyf_A 226 SD-----GGLWLAIMSPAALSRIEAIAATGR-----WVPDF-LSLPIAVENSLKNQTYNTPAI---ATLALLAEQI--DW 289 (398)
T ss_dssp SC-----SSEEEEEECHHHHHHHHHHHHTTC-----CCCGG-GCHHHHHHHHTTTCCSSCCCH---HHHHHHHHHH--HH
T ss_pred CC-----CceEEEEECHHHHHHhhcccccCC-----CCCcE-EehHHHhhhcccCCCCCCCCH---HHHHHHHHHH--HH
Confidence 32 258999999988766510000 00 00000 0000000000 011133333 3344444444 44
Q ss_pred hCcch-HHHHHHHHHHHHHHHHHHHhcCCCeEEcC-CC--Ccc-eEEEecC-C--HHHHHHHHHHcCceeeee----cCC
Q 001989 438 HGPEG-LKTIAQRVHGLAGTFALGLKKLGTVEVQG-LP--FFD-TVKVKCA-D--AHAIASAAYKIEMNLRVV----DSN 505 (985)
Q Consensus 438 ~g~~G-l~~i~~~~~~~a~~l~~~L~~~g~~~~~~-~~--~~~-~~~~~~~-~--~~~v~~~L~~~GI~~~~~----~~~ 505 (985)
+..+| ++++.++..++++++.+.|++++++++.. .+ ..+ .+.+..+ + +.++.+.|.++||.++.- ..+
T Consensus 290 ~~~~g~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~ 369 (398)
T 2fyf_A 290 LVGNGGLDWAVKRTADSSQRLYSWAQERPYTTPFVTDPGLRSQVVGTIDFVDDVDAGTVAKILRANGIVDTEPYRKLGRN 369 (398)
T ss_dssp HHHHTSHHHHHHHHHHHHHHHHHHHHHSTTEEESCCSGGGBCSSEEEEEECTTSCHHHHHHHHHHTTCBCCSCCTTTCSS
T ss_pred HHHccCHHHHHHHHHHHHHHHHHHHHHcCCceeccCChhhcCCcEEEEECCCCCCHHHHHHHHHHCCcEEecCcccCCCC
Confidence 44556 89999999999999999999983398874 22 233 4556654 2 789999999999988532 247
Q ss_pred eEEEEeccCCCHHHHHHHHHHHhC
Q 001989 506 TVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 506 ~lris~t~~~t~edId~li~aL~~ 529 (985)
.+|+|++.++|++|+++++++|++
T Consensus 370 ~iRis~~~~~t~e~i~~~~~~l~~ 393 (398)
T 2fyf_A 370 QLRVAMFPAVEPDDVSALTECVDW 393 (398)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEEecCCCCHHHHHHHHHHHHH
Confidence 899999999999999999999874
|
| >2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme, pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A 2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=1.1e-15 Score=178.73 Aligned_cols=299 Identities=15% Similarity=0.199 Sum_probs=181.2
Q ss_pred HHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCC-cccHHHHHHCCcEEEEEcCCC-
Q 001989 634 FNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAH-GTNPATAAMCGMKIVSVGTDA- 711 (985)
Q Consensus 634 ~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~H-g~~~~~a~~~G~~vv~v~~d~- 711 (985)
..++++.+++++|.+. .+++++|++|++.++.++. .++| |++...| +++...+...|++++.+++++
T Consensus 77 ~~~l~~~la~~~~~~~-~~~~~~gt~a~~~al~~l~--------~~gd--i~~~~~~~~~~~~~~~~~G~~~~~v~~~~~ 145 (456)
T 2ez2_A 77 FYHLERTVQELFGFKH-IVPTHQGRGAENLLSQLAI--------KPGQ--YVAGNMYFTTTRYHQEKNGAVFVDIVRDEA 145 (456)
T ss_dssp HHHHHHHHHHHHCCSE-EEEESSHHHHHHHHHHHHC--------CTTC--EEEESSCCHHHHHHHHHTTCEEEECBCGGG
T ss_pred HHHHHHHHHHHhCCCc-EEEeCCcHHHHHHHHHHhC--------CCCC--EeccccccchhHHHHHHcCCEEEEeccccc
Confidence 4578889999999874 4566778887765554431 3567 5545455 776677788999999998863
Q ss_pred ---------CCCCCHHHHHHHHHhcC-CCEEEEEEEcC-C-Ccccccc--CHHHHHHHHHHcCCEEEEEccccccc----
Q 001989 712 ---------KGNINIEELRKAAEANR-DNLSTLMVTYP-S-THGVYEE--GIDEICKIIHDNGGQVYMDGANMNAQ---- 773 (985)
Q Consensus 712 ---------~g~iD~e~L~~~i~~~~-~~t~~Vvv~~p-n-~~G~i~~--di~eI~~la~~~galliVD~a~~~~~---- 773 (985)
++.+|+++|++++++.. +++++|++++| | .+|.+.+ ++++|+++|+++|+++|+|++|..+.
T Consensus 146 ~~~~~~~~~~~~~d~~~l~~~i~~~t~~~~~~v~l~~p~n~ptG~~~~~~~l~~i~~la~~~~i~li~De~~~~g~~~~~ 225 (456)
T 2ez2_A 146 HDAGLNIAFKGDIDLKKLQKLIDEKGAENIAYICLAVTVNLAGGQPVSMANMRAVRELTEAHGIKVFYDATRCVENAYFI 225 (456)
T ss_dssp GCTTCCCSCTTCBCHHHHHHHHHHHCGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHH
T ss_pred ccccccccccCCCCHHHHHHHHHhccccceeEEEEeccCCCCCCccCCHHHHHHHHHHHHHcCCeEEEEccccccccccc
Confidence 26789999999997321 23489999988 4 6898751 39999999999999999999986420
Q ss_pred ----cCCC-CCC-------ccCCcEEEeCCcccccccCCCCCCceEEEEE-cccccCcCCCC-ccccCCCCCCCCCCCCC
Q 001989 774 ----VGLT-SPG-------YIGADVCHLNLHKTFCIPHGGGGPGMGPIGV-KKHLAPFLPSH-PVVSTGGIPAPEKSQPL 839 (985)
Q Consensus 774 ----~~l~-~pg-------~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~-~~~l~~~lp~~-~~g~~~~~~~~~~~~~~ 839 (985)
..+. .+- ....|++++|+||+++ .|.+|++++ ++++.+.+... ..+. + . ...
T Consensus 226 ~~~~~~~~g~~~~~~~~~~~~~~d~~~~S~kk~~~------~~~gG~~~~~~~~~~~~~~~~~~~~~-~------~-~~~ 291 (456)
T 2ez2_A 226 KEQEQGFENKSIAEIVHEMFSYADGCTMSGKKDCL------VNIGGFLCMNDDEMFSSAKELVVVYE-G------M-PSY 291 (456)
T ss_dssp HHHSTTCTTSCHHHHHHHHHTTCSEEEEETTTTTC------CSSCEEEEESCHHHHHHHHHHHHHHT-C------C-TTT
T ss_pred cccccccCCcchhhhhhhhcccCCEEEEeCcccCC------CCceeEEEECCHHHHHHHHHHHhhcc-C------c-ccc
Confidence 1111 110 1236999888888753 224688888 45554332110 0000 0 0 000
Q ss_pred CCCCCcchhhhHHHHH-HHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCC
Q 001989 840 GTIAAAPWGSALILPI-SYTYIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAG 917 (985)
Q Consensus 840 ~~i~s~~~g~~~~~~~-a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g 917 (985)
.+.++ . .+.+ +.+.+..+. .+..++..++.+++.+.|++ ++.+.. +.+..+ +.+.+..+. .+
T Consensus 292 ~~~~~----~--~~~a~a~~~~~~~~----~~~~~~~~~~~~~l~~~L~~~g~~~~~--p~~~~~--~~~~~~~~~--~~ 355 (456)
T 2ez2_A 292 GGLAG----R--DMEAMAIGLREAMQ----YEYIEHRVKQVRYLGDKLKAAGVPIVE--PVGGHA--VFLDARRFC--EH 355 (456)
T ss_dssp TTCCH----H--HHHHHHHHHHHHTC----HHHHHHHHHHHHHHHHHHHHTTCCBCS--SCCSSE--EEEEHHHHT--TT
T ss_pred cCcch----h--HHHHHHHHHHHHhH----HHHHHHHHHHHHHHHHHHhcCCCcccc--CCCceE--EEEEhHHhc--CC
Confidence 11111 1 1111 333333332 23444556677888888876 454422 222222 334432000 02
Q ss_pred CCHHHH-----HHHH-HHCCCccC--CC-C-----------CCCCCEEEEeccCC-CCHHHHHHHHccCChhHHHHhhc
Q 001989 918 IEPEDV-----AKRL-MDYGFHGP--TM-S-----------WPVPGTLMIEPTES-ESKSWTGIVMLSSPSEKKLHRLK 975 (985)
Q Consensus 918 ~~~~~v-----~~~L-~~~Gi~~~--~~-~-----------~p~~~~lris~t~~-~t~eeId~~~~~~~l~~~~~~~~ 975 (985)
.+..++ +++| .++||.+. .. . .+..+.+||+++.. +|++||++ +++.|++++++.+
T Consensus 356 ~~~~~~~~~~l~~~L~~~~gv~~~~~g~~~~~~~~~~g~~~~~~~~~iRis~~~~~~t~e~i~~--~~~~l~~~l~~~~ 432 (456)
T 2ez2_A 356 LTQDEFPAQSLAASIYVETGVRSMERGIISAGRNNVTGEHHRPKLETVRLTIPRRVYTYAHMDV--VADGIIKLYQHKE 432 (456)
T ss_dssp SCGGGCHHHHHHHHHHHHHSEECEEESHHHHCBCTTTCSBCCCSCCEEEEECCTTTCCHHHHHH--HHHHHHHHHHTGG
T ss_pred CChhhccHHHHHHHHHHhcCeeeecccccccccCccccccccCCCCeEEEEeCCCCCCHHHHHH--HHHHHHHHHhhhh
Confidence 233344 7777 57788642 11 0 11237899999987 89999999 8889998887654
|
| >1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase, pyridoxal 5'-phosphate, monovalent cation binding site; HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2 | Back alignment and structure |
|---|
Probab=99.66 E-value=2.3e-15 Score=176.66 Aligned_cols=305 Identities=16% Similarity=0.186 Sum_probs=183.5
Q ss_pred HHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCE---EEEcCCCC-cccHHHHHHCCcEEEEEcC
Q 001989 634 FNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNV---CIIPVSAH-GTNPATAAMCGMKIVSVGT 709 (985)
Q Consensus 634 ~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~---IIv~~~~H-g~~~~~a~~~G~~vv~v~~ 709 (985)
..++++++++++|.+. .+++++|++|++.++.+++.+... +|++ ||++ ..| +.+.......|.+++.++.
T Consensus 78 ~~~l~~~la~~~~~~~-v~~t~ggt~A~~~al~~~~~~~~~----~Gd~~~~viv~-~~~~~~~~~~~~~~g~~~~~~~~ 151 (467)
T 1ax4_A 78 YYDLKDKAKELFNYDY-IIPAHQGRGAENILFPVLLKYKQK----EGKAKNPVFIS-NFHFDTTAAHVELNGCKAINIVT 151 (467)
T ss_dssp HHHHHHHHHHHHCCCE-EEEESSHHHHHHHHHHHHHHHHHH----TTCCSSCEEEE-SSCCHHHHHHHHHTTCEEEECBC
T ss_pred HHHHHHHHHHHcCCCc-EEEcCCcHHHHHHHHHHHHHhhcc----CCCccceEEEe-ccccchhhHHHhccCCceecccc
Confidence 4477889999998764 355677888887777766543211 4566 8887 445 4445556778998887653
Q ss_pred C----------CCCCCCHHHHHHHHHhcC-CCEEEEEEEcC-CCc-cccc--cCHHHHHHHHHHcCCEEEEEccccc---
Q 001989 710 D----------AKGNINIEELRKAAEANR-DNLSTLMVTYP-STH-GVYE--EGIDEICKIIHDNGGQVYMDGANMN--- 771 (985)
Q Consensus 710 d----------~~g~iD~e~L~~~i~~~~-~~t~~Vvv~~p-n~~-G~i~--~di~eI~~la~~~galliVD~a~~~--- 771 (985)
+ .++.+|+++|+++|++++ ++|++|++++| |++ |.+. .++++|+++|+++|+++|+|+++..
T Consensus 152 ~~~~~~~~~~~~~~~~d~~~le~~i~~~~~~~~~~vi~~~~~np~gG~~~~~~~l~~i~~la~~~gi~li~De~~~~~~~ 231 (467)
T 1ax4_A 152 EKAFDSETYDDWKGDFDIKKLKENIAQHGADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSARFCENA 231 (467)
T ss_dssp GGGGCTTSCCTTTTCBCHHHHHHHHHHHCGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEECTTHHHHH
T ss_pred cccccccccCCcccccCHHHHHHHHHhcCCCCeeEEEEeccccCCCccCCChhHHHHHHHHHHHcCCEEEEEchhhhhcc
Confidence 2 146789999999998432 37999999998 466 6653 2688999999999999999998753
Q ss_pred --------cccCCCCCCc------cCCcEEEeCCcccccccCCCCCCceEEEEEc-c-cccCcCCCCc--cccCCCCCCC
Q 001989 772 --------AQVGLTSPGY------IGADVCHLNLHKTFCIPHGGGGPGMGPIGVK-K-HLAPFLPSHP--VVSTGGIPAP 833 (985)
Q Consensus 772 --------~~~~l~~pg~------~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~-~-~l~~~lp~~~--~g~~~~~~~~ 833 (985)
+..+. .+.. ..+|++++++||+++. |.+|+++.+ + ++.+.+.... .+..
T Consensus 232 ~~~~~~~~~~~~~-~~~~~~~~~~~~~d~~~~s~sK~~g~------~~Gg~~~~~d~~~l~~~~~~~~~~~~~~------ 298 (467)
T 1ax4_A 232 YFIKARDPKYKNA-TIKEVIFDMYKYADALTMSAKKDPLL------NIGGLVAIRDNEEIFTLARQRCVPMEGF------ 298 (467)
T ss_dssp HHHHHHCGGGTTC-CHHHHHHHHGGGCSEEEEETTSTTCC------SSCEEEEESSCHHHHHHHHHHHHHHTCS------
T ss_pred hhccccccccCCC-chhhhhhhhccccceEEEeccccCCC------CcceEEEeCCHHHHHHHHHhhccccccc------
Confidence 11111 1112 2479999999998853 323777777 5 5543321000 0000
Q ss_pred CCCCCCCCCCCcchhhhHHHHHH-HHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecC
Q 001989 834 EKSQPLGTIAAAPWGSALILPIS-YTYIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRG 911 (985)
Q Consensus 834 ~~~~~~~~i~s~~~g~~~~~~~a-~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~ 911 (985)
.. .+. .......+ .+.+..+..+ +..++..++++++.+.|++ ++.+. .+.+.. .+.+++..
T Consensus 299 -~~--~~~-------~~~~~~~a~~~~l~~~~~~---~~~~~~~~~~~~l~~~L~~~~~~~~--~~~~~~--~~~~~~~~ 361 (467)
T 1ax4_A 299 -VT--YGG-------LAGRDMAAMVQGLEEGTEE---EYLHYRIGQVKYLGDRLREAGIPIQ--YPTGGH--AVFVDCKK 361 (467)
T ss_dssp -TT--TTT-------CCHHHHHHHHHHHHHTTCH---HHHHHHHHHHHHHHHHHHHTTCCBC--SSCCSS--EEEEESTT
T ss_pred -cc--cCC-------ccchHHHHHHHHHHHhhhh---hHHHHHHHHHHHHHHHHHhCCCCcc--cCCCce--EEEEehhh
Confidence 00 001 11111111 1123322211 1223344677889999976 45443 222222 23344110
Q ss_pred c---cccCCCCHHHHHHHH-HHCCCccCCCC------CC--------CCCEEEEecc-CCCCHHHHHHHHccCChhHHHH
Q 001989 912 L---KNTAGIEPEDVAKRL-MDYGFHGPTMS------WP--------VPGTLMIEPT-ESESKSWTGIVMLSSPSEKKLH 972 (985)
Q Consensus 912 ~---~~~~g~~~~~v~~~L-~~~Gi~~~~~~------~p--------~~~~lris~t-~~~t~eeId~~~~~~~l~~~~~ 972 (985)
+ ....+.+..+++++| .++||.+.... .| ..+.+|++++ ..+|++|||+ +++.|+++++
T Consensus 362 ~~~~~~~~~~~~~~l~~~L~~~~gv~v~~~g~~~~~~~~~~g~~~~~~~~~iRls~~~~~~t~e~i~~--~~~~l~~~~~ 439 (467)
T 1ax4_A 362 LVPQIPGDQFPAQAVINALYLESGVRAVEIGSFLLGRDPATGEQKHADMEFMRLTIARRVYTNDHMDY--IADALIGLKE 439 (467)
T ss_dssp TCTTSCGGGCHHHHHHHHHHHHHCEECEEESHHHHCBCTTTCSBCCCSCCEEEEECCTTSSCHHHHHH--HHHHHHTTHH
T ss_pred hccccccCCCCHHHHHHHHHHhcCceeeecCccccccccccccccccccceEEEecccccCCHHHHHH--HHHHHHHHHH
Confidence 0 000123567899999 88899864310 01 1278999999 4599999999 7788888877
Q ss_pred hhcc
Q 001989 973 RLKM 976 (985)
Q Consensus 973 ~~~~ 976 (985)
+++.
T Consensus 440 ~~~~ 443 (467)
T 1ax4_A 440 KFAT 443 (467)
T ss_dssp HHTT
T ss_pred hhhc
Confidence 6543
|
| >3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.66 E-value=9.1e-16 Score=177.00 Aligned_cols=301 Identities=12% Similarity=0.106 Sum_probs=176.2
Q ss_pred hhHHHHHHHHHHHHHHHhCC--Cccc-eecCcHHHHHHHHHHHHHHHHHhcCCCCCC-----EEEEc-CCCCcccHHHHH
Q 001989 628 QGYQEMFNNLGEWLCTITGF--DSFS-LQPNAGAAGEYAGLMVIRAYHKARGDHHRN-----VCIIP-VSAHGTNPATAA 698 (985)
Q Consensus 628 ~G~~~~~~e~~~~la~l~G~--~~~~-~~~~sGa~a~~a~l~air~~~~~~g~~~~~-----~IIv~-~~~Hg~~~~~a~ 698 (985)
+|..++.+.+.+++.+.+|. +... +++++|++|+..++.++. .+++ +|+++ .+.|..+...+.
T Consensus 75 ~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~t~al~~~~~~l~--------~~gd~~~~~~vi~~~~p~~~~~~~~~~ 146 (417)
T 3g7q_A 75 QGKTALLNALAVLLRETLGWDIEPQNIALTNGSQSAFFYLFNLFA--------GRRADGSTKKVLFPLAPEYIGYADSGL 146 (417)
T ss_dssp TSHHHHHHHHHHHHHHHHCCCCCGGGEEEESCHHHHHHHHHHHHS--------BC----CCBEEEESSCCCHHHHHC---
T ss_pred CCcHHHHHHHHHHHHHHhCCCCCcccEEEeCCcHHHHHHHHHHHc--------CCCccCCcceEEEeCCCccccchhhcc
Confidence 56666665566666555554 3444 455666666644443331 2333 88887 654433322221
Q ss_pred ------HCCcEEEEEcCCC-CCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccC---HHHHHHHHHHcCCEEEEEc
Q 001989 699 ------MCGMKIVSVGTDA-KGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEG---IDEICKIIHDNGGQVYMDG 767 (985)
Q Consensus 699 ------~~G~~vv~v~~d~-~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~d---i~eI~~la~~~galliVD~ 767 (985)
..+..+..++.+. ++.+|+++|+ ++ +++++|++++| |++|.+. + +++|+++|+++|+++|+|+
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~--~~---~~~~~v~~~~p~NptG~~~-~~~~~~~l~~~a~~~~~~li~De 220 (417)
T 3g7q_A 147 EDDLFVSARPNIELLPEGQFKYHVDFEHLH--IG---EETGMICVSRPTNPTGNVI-TDEELMKLDRLANQHNIPLVIDN 220 (417)
T ss_dssp --CCEEECCCEEEEEGGGEEEEECCGGGCC--CC---TTEEEEEEESSCTTTCCCC-CHHHHHHHHHHHHHTTCCEEEEC
T ss_pred chhhhccccCcccccCCcccccccCHHHhc--cc---cCceEEEECCCCCCCCCcc-CHHHHHHHHHHHHHcCCEEEEeC
Confidence 1344565565432 3468999988 54 78999999999 5799986 5 8999999999999999999
Q ss_pred cccccccCC----CCCCccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCC
Q 001989 768 ANMNAQVGL----TSPGYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIA 843 (985)
Q Consensus 768 a~~~~~~~l----~~pg~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~ 843 (985)
++.....+. ..+...+.++++.|++| ++. +|.++|++++++++.+.+...... . +.+
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK-~~~----~G~r~G~~~~~~~~~~~~~~~~~~------------~--~~~ 281 (417)
T 3g7q_A 221 AYGVPFPGIIFSEARPLWNPNIILCMSLSK-LGL----PGSRCGIIIANDKTITAIANMNGI------------I--SLA 281 (417)
T ss_dssp TTCTTTTCCBCSCCCCCCCTTEEEEEESGG-GTC----TTSCCEEEECCHHHHHHHHHHHHH------------H--CCC
T ss_pred CCccccccccccccccCCCCCEEEEEechh-ccC----CCcceEEEEeCHHHHHHHHHhhcc------------e--eeC
Confidence 985311111 12333467888999999 433 356799999887766544211000 0 011
Q ss_pred CcchhhhHHHHHHHHHHHHhcHHH-HHH-HHHHHHHHHHHHHHHhhccC---CeeecCCCCceeeEEEEEecCccccCCC
Q 001989 844 AAPWGSALILPISYTYIAMMGSKG-LTE-ASKIAILNANYMAKRLEKHY---PILFRGVNGTVAHEFIVDLRGLKNTAGI 918 (985)
Q Consensus 844 s~~~g~~~~~~~a~a~l~~lg~eG-l~~-~~~~~~~~a~~l~~~L~~g~---~l~~~~~~~~~~~~~iv~~~~~~~~~g~ 918 (985)
++. ....++.+++....... +.+ ..+...++.+++.+.|++.+ .+.+..+.+..+ +.+.++. .+.
T Consensus 282 ~~~----~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~g~~--~~~~~~~----~~~ 351 (417)
T 3g7q_A 282 PGG----MGPAMMCEMIKRNDLLRLSETVIKPFYYQRVQQTIAIIRRYLSEERCLIHKPEGAIF--LWLWFKD----LPI 351 (417)
T ss_dssp CCS----HHHHHHHHHHHTTCHHHHHHHTHHHHHHHHHHHHHHHHHHHCCTTTCEEECCCBSSE--EEEECTT----CSS
T ss_pred CCc----HHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCceeeCCCcceE--EEEEcCC----CCC
Confidence 111 11222233343222111 111 23344556677777776521 232222222222 3455541 146
Q ss_pred CHHHHHHHHHHCCCccCCCC-C-C-C-------CCEEEEeccCCCCHHHHHHHHccCChhHHHHhhc
Q 001989 919 EPEDVAKRLMDYGFHGPTMS-W-P-V-------PGTLMIEPTESESKSWTGIVMLSSPSEKKLHRLK 975 (985)
Q Consensus 919 ~~~~v~~~L~~~Gi~~~~~~-~-p-~-------~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~~ 975 (985)
+..++.+.|.++||.+.... + + . .+++||+++. +++||++ +++.|+++++++.
T Consensus 352 ~~~~l~~~l~~~gi~v~~g~~f~~~~~~~~~~~~~~iRis~~~--~~~~i~~--~~~~l~~~l~~~~ 414 (417)
T 3g7q_A 352 TTELLYQRLKARGVLMVPGHYFFPGLDKPWPHTHQCMRMNYVP--EPDKIEA--GVKILAEEIERAW 414 (417)
T ss_dssp CHHHHHHHHHHTTEECEEGGGGCTTBSSCCGGGGGEEEEESCS--CHHHHHH--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHCCEEEECchhhCCCCccccccCCCeEEEEecC--CHHHHHH--HHHHHHHHHHHHH
Confidence 78899999999999875321 1 1 1 4689999985 9999999 8889999887654
|
| >3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes} | Back alignment and structure |
|---|
Probab=99.66 E-value=4e-15 Score=172.67 Aligned_cols=143 Identities=15% Similarity=0.204 Sum_probs=117.9
Q ss_pred HHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHH----HHHHCCcEEEEEcC
Q 001989 634 FNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPA----TAAMCGMKIVSVGT 709 (985)
Q Consensus 634 ~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~----~a~~~G~~vv~v~~ 709 (985)
..++++++++++|.+. .+.+++|++|+..+++++. +++|+||+++..|+.... .+...|++++.++.
T Consensus 84 ~~~le~~lA~l~g~~~-~v~~~sG~~Ai~~al~al~--------~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~~~~v~~ 154 (430)
T 3ri6_A 84 VEDLEQRLKNLTGALG-VLALGSGMAAISTAILTLA--------RAGDSVVTTDRLFGHTLSLFQKTLPSFGIEVRFVDV 154 (430)
T ss_dssp HHHHHHHHHHHHTCSE-EEEESCHHHHHHHHHHHHC--------CTTCEEEEETTCCHHHHHHHHTHHHHTTCEEEEECT
T ss_pred HHHHHHHHHHHHCCCc-EEEECCHHHHHHHHHHHHh--------CCCCEEEEcCCCchhHHHHHHHHHHHcCCEEEEeCC
Confidence 5688999999999876 4556788877655544431 478999998887776554 45678999999997
Q ss_pred CCCCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCccCCcEEE
Q 001989 710 DAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIGADVCH 788 (985)
Q Consensus 710 d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~g~Di~~ 788 (985)
+ |+++|+++++ ++|++|++++| |++|.+. |+++|+++|+++|+++++|+++.. +.+..|..+|+|+++
T Consensus 155 ~-----d~~~l~~ai~---~~t~~v~~e~p~NptG~~~-dl~~i~~la~~~g~~livD~a~~~--~~~~~~~~~g~div~ 223 (430)
T 3ri6_A 155 M-----DSLAVEHACD---ETTKLLFLETISNPQLQVA-DLEALSKVVHAKGIPLVVDTTMTP--PYLLEAKRLGVDIEV 223 (430)
T ss_dssp T-----CHHHHHHHCC---TTEEEEEEESSCTTTCCCC-CHHHHHHHHHTTTCCEEEECTTSC--TTTCCGGGGTCSEEE
T ss_pred C-----CHHHHHHhhC---CCCeEEEEECCCCCCCeec-CHHHHHHHHHHcCCEEEEECCCcc--cccCChHHcCCEEEE
Confidence 5 8999999997 79999999999 5799998 899999999999999999999853 334567788999999
Q ss_pred eCCccccc
Q 001989 789 LNLHKTFC 796 (985)
Q Consensus 789 ~s~hK~l~ 796 (985)
.|++|+|+
T Consensus 224 ~S~sK~l~ 231 (430)
T 3ri6_A 224 LSSTKFIS 231 (430)
T ss_dssp EECCCEEE
T ss_pred ECCccccc
Confidence 99999994
|
| >1uu1_A Histidinol-phosphate aminotransferase; histidine biosynthesis, pyridoxal phosphate, complete proteome; HET: PMP HSA; 2.38A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1uu0_A 1h1c_A* 1uu2_A* 2f8j_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=5.6e-16 Score=173.69 Aligned_cols=267 Identities=13% Similarity=0.094 Sum_probs=177.4
Q ss_pred HHHHHHHHHHhC---CCccce-ecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcCC
Q 001989 635 NNLGEWLCTITG---FDSFSL-QPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTD 710 (985)
Q Consensus 635 ~e~~~~la~l~G---~~~~~~-~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~d 710 (985)
.++++.++++++ .+...+ +.++|++++. .+++.+ +++|+++ +.|..+...++..|++++.+|.+
T Consensus 59 ~~lr~~la~~~~~~~~~~~~v~~~~G~~~al~---~~~~~~--------gd~Vl~~-p~y~~~~~~~~~~g~~~~~v~~~ 126 (335)
T 1uu1_A 59 EELIEKILSYLDTDFLSKNNVSVGNGADEIIY---VMMLMF--------DRSVFFP-PTYSCYRIFAKAVGAKFLEVPLT 126 (335)
T ss_dssp HHHHHHHHHHHTCSSCCGGGEEEESSHHHHHH---HHHHHS--------SEEEECS-SSCHHHHHHHHHHTCEEEECCCC
T ss_pred HHHHHHHHHHcCCCCCCHHHEEEcCChHHHHH---HHHHHh--------CCcEEEC-CCcHHHHHHHHHcCCeEEEeccC
Confidence 478889999998 665444 4455555553 333321 4789998 87766666677889999999987
Q ss_pred CCCCCCHHHHHHHHHhcCCCEEEEEEEcCC-CccccccCHHHHHHHHHHcCCEEEEEcccccccc-C-CCCCCccCCcEE
Q 001989 711 AKGNINIEELRKAAEANRDNLSTLMVTYPS-THGVYEEGIDEICKIIHDNGGQVYMDGANMNAQV-G-LTSPGYIGADVC 787 (985)
Q Consensus 711 ~~g~iD~e~L~~~i~~~~~~t~~Vvv~~pn-~~G~i~~di~eI~~la~~~galliVD~a~~~~~~-~-l~~pg~~g~Di~ 787 (985)
+++.+|+++| +++++|++++|+ ++|.+. +.+++.++++..| ++++|+++..... . +...+..+.+++
T Consensus 127 ~~~~~d~~~l--------~~~~~v~l~~p~nptG~~~-~~~~l~~l~~~~~-~li~De~~~~~~~~~~~~~~~~~~~~i~ 196 (335)
T 1uu1_A 127 KDLRIPEVNV--------GEGDVVFIPNPNNPTGHVF-EREEIERILKTGA-FVALDEAYYEFHGESYVDFLKKYENLAV 196 (335)
T ss_dssp TTSCCCCCCC--------CTTEEEEEESSCTTTCCCC-CHHHHHHHHHTTC-EEEEECTTHHHHCCCCGGGGGTCSSEEE
T ss_pred CCCCCCHHHc--------CCCCEEEEeCCCCCCCCCC-CHHHHHHHHHhCC-EEEEECcchhhcchhHHHHhhhCCCEEE
Confidence 7778888776 357889989995 699998 8999999999989 9999999852111 1 111233456789
Q ss_pred EeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHH
Q 001989 788 HLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKG 867 (985)
Q Consensus 788 ~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eG 867 (985)
+.|++|+|+. .|.++|++++++++.+.+.... .+.+ . +.....++.+++.. .+.
T Consensus 197 ~~s~sK~~g~----~G~r~G~~~~~~~~~~~l~~~~--------------~~~~--~----~~~~~~~~~~~l~~--~~~ 250 (335)
T 1uu1_A 197 IRTFSKAFSL----AAQRVGYVVASEKFIDAYNRVR--------------LPFN--V----SYVSQMFAKVALDH--REI 250 (335)
T ss_dssp EEESTTTTTC----GGGCCEEEEECHHHHHHHHHHS--------------CTTC--S----CHHHHHHHHHHHHT--HHH
T ss_pred EecchhhcCC----cccCeEEEEeCHHHHHHHHHhc--------------CCCC--c----CHHHHHHHHHHhCC--HHH
Confidence 9999999853 3567899999877654432100 0001 1 11222223334443 245
Q ss_pred HHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCCCCCCCEEE
Q 001989 868 LTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLM 946 (985)
Q Consensus 868 l~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~~p~~~~lr 946 (985)
+.+..++..++++++.+.|++ ++.+ . ++.+. + +.+.++ +.+..++.+.|.++||.+.. ..+++|
T Consensus 251 ~~~~~~~~~~~~~~l~~~L~~~g~~~-~-~~~~~-~--~~~~~~------~~~~~~~~~~l~~~gi~v~~----~~~~iR 315 (335)
T 1uu1_A 251 FEERTKFIVEERERMKSALREMGYRI-T-DSRGN-F--VFVFME------KEEKERLLEHLRTKNVAVRS----FREGVR 315 (335)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCCB-C-CCCSS-E--EEEECC------THHHHHHHHHHHHHTEEEEE----ETTEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCcEE-c-CCCCe-E--EEEECC------CCCHHHHHHHHHHCCEEEEE----CCCeEE
Confidence 666777788889999999987 4543 2 22222 2 345553 22467899999999998754 247999
Q ss_pred EeccCCCCHHHHHHHHccCChhH
Q 001989 947 IEPTESESKSWTGIVMLSSPSEK 969 (985)
Q Consensus 947 is~t~~~t~eeId~~~~~~~l~~ 969 (985)
|++ .+.+|+++ +++.|++
T Consensus 316 is~---~~~~~i~~--~~~~l~~ 333 (335)
T 1uu1_A 316 ITI---GKREENDM--ILRELEV 333 (335)
T ss_dssp EEC---CCHHHHHH--HHHHHHC
T ss_pred EEe---CCHHHHHH--HHHHHHh
Confidence 998 45789999 5555543
|
| >2aeu_A Hypothetical protein MJ0158; selenocysteine synthase, PLP, pyridoxal phosphate, HOMO- oligomerization, unknown function; 1.70A {Methanocaldococcus jannaschii} SCOP: c.67.1.8 PDB: 2aev_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=1.1e-15 Score=174.44 Aligned_cols=283 Identities=17% Similarity=0.170 Sum_probs=169.2
Q ss_pred HHHHHHHHHHhCCC--ccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHH---HHHHCCcEEEEEcC
Q 001989 635 NNLGEWLCTITGFD--SFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPA---TAAMCGMKIVSVGT 709 (985)
Q Consensus 635 ~e~~~~la~l~G~~--~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~---~a~~~G~~vv~v~~ 709 (985)
+++++.+++++|.+ ...+++++|++|+..++. .+ ++|+||++...|+.+.. .++..|++++.+
T Consensus 61 ~~~~~~~a~~~g~~~~~~~~~~~ggt~a~~~~~~---~~-------~gd~Vl~~~~~y~~~~~~~~~~~~~g~~~~~v-- 128 (374)
T 2aeu_A 61 EKVNEYGLKHLGGDENDKCVGFNRTSSAILATIL---AL-------KPKKVIHYLPELPGHPSIERSCKIVNAKYFES-- 128 (374)
T ss_dssp HHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHH---HH-------CCSEEEEECSSSSCCTHHHHHHHHTTCEEEEE--
T ss_pred HHHHHHHHHHhCCCCcceEEEEcChHHHHHHHHH---hC-------CCCEEEEecCCCCccHHHHHHHHHcCcEEEEe--
Confidence 56777788999983 334666788877754443 22 46889998775554433 466789999888
Q ss_pred CCCCCCCHHHHHHHHHhcCCCEEE-EEEEcCC-Ccc-ccccCHHHHHHHHHHcCCEEEEEcccccccc-CCCC--CCccC
Q 001989 710 DAKGNINIEELRKAAEANRDNLST-LMVTYPS-THG-VYEEGIDEICKIIHDNGGQVYMDGANMNAQV-GLTS--PGYIG 783 (985)
Q Consensus 710 d~~g~iD~e~L~~~i~~~~~~t~~-Vvv~~pn-~~G-~i~~di~eI~~la~~~galliVD~a~~~~~~-~l~~--pg~~g 783 (985)
.|+++|+++ + +++++ |++++|+ ++| ... |+++|.++|+++|+++++|+++..... .... +..++
T Consensus 129 -----~d~~~l~~~-~---~~~~~~v~~~~p~nptG~~~~-~l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~ 198 (374)
T 2aeu_A 129 -----DKVGEILNK-I---DKDTLVIITGSTMDLKVIELE-NFKKVINTAKNKEAIVFVDDASGARVRLLFNQPPALKLG 198 (374)
T ss_dssp -----SCHHHHHTT-C---CTTEEEEEECBCTTSCBCCHH-HHHHHHHHHHHHTCCEEEECTTHHHHHHHTTCCCHHHHT
T ss_pred -----CCHHHHHhc-C---CCccEEEEEccCCCCCCCCcc-cHHHHHHHHHHcCCEEEEECCcccccccccccCCccccC
Confidence 289999887 5 78899 9998885 688 666 899999999999999999998853321 1111 33467
Q ss_pred CcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHh
Q 001989 784 ADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMM 863 (985)
Q Consensus 784 ~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~l 863 (985)
+|+++.|+||++ +||++|++++++++.+.+.... . .++. +. ++..+.++.+.+..+
T Consensus 199 ~di~~~S~sK~l------~g~~~G~~~~~~~~~~~l~~~~-~------------~~~~-~~----~~~~~~a~~~al~~~ 254 (374)
T 2aeu_A 199 ADLVVTSTDKLM------EGPRGGLLAGKKELVDKIYIEG-T------------KFGL-EA----QPPLLAGIYRALKNF 254 (374)
T ss_dssp CSEEEEETTSSS------SSCSCEEEEEEHHHHHHHHHHH-H------------TTTC-BC----CHHHHHHHHHHHHHC
T ss_pred CcEEEecCcccc------cCcceEEEEECHHHHHHHHHhh-c------------cccC-CC----CHHHHHHHHHHHHHH
Confidence 899999999986 4689999999887665442110 0 0011 11 112222333445544
Q ss_pred cHHHHHHHHHHHHHHHHHH----HHHhhcc---C----Ceee-cCCCCceeeEEEEEecCccccCCCC---HHHHHHH-H
Q 001989 864 GSKGLTEASKIAILNANYM----AKRLEKH---Y----PILF-RGVNGTVAHEFIVDLRGLKNTAGIE---PEDVAKR-L 927 (985)
Q Consensus 864 g~eGl~~~~~~~~~~a~~l----~~~L~~g---~----~l~~-~~~~~~~~~~~iv~~~~~~~~~g~~---~~~v~~~-L 927 (985)
..+.+ ++..++++++ ++.|.+. + ++.+ ..+.+..+ +..+... ..+ ..+++.. |
T Consensus 255 ~~~~~----~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~~~~~~g~~~--~~~~~~~-----~~~~~~~~~~~~~ll 323 (374)
T 2aeu_A 255 NLERI----RKAFERAKNFDLSKIEKLNKELKAIDDNINIVYERTPTGFVI--KRVYKDD-----TINIKKLIEIGFNLL 323 (374)
T ss_dssp CHHHH----HHHHHHHHHCCCHHHHHHHHHHTTTCTTEEEEEEECSSEEEE--EEEESSH-----HHHHHHHHHHHHHHH
T ss_pred hHHHH----HHHHHHHHHHHHHHHHHHHHhhhhhhhccCcceeeCCceEEE--Eeecccc-----cccccchHHHHHHHH
Confidence 33222 2333444444 3444321 1 1211 12211111 1112210 000 1225544 4
Q ss_pred HHCCCccCCC-CCC-CCCEEEEeccC-CCCHHHHHHHHccCChhHHHHhhcc
Q 001989 928 MDYGFHGPTM-SWP-VPGTLMIEPTE-SESKSWTGIVMLSSPSEKKLHRLKM 976 (985)
Q Consensus 928 ~~~Gi~~~~~-~~p-~~~~lris~t~-~~t~eeId~~~~~~~l~~~~~~~~~ 976 (985)
.++||.+... .+| ..+.+||+++. ..+++++++ +++.++++++++.+
T Consensus 324 ~~~gV~v~~g~~~~~~~~~lRi~~~~~~~~~~~l~~--l~~~l~~~l~~~~~ 373 (374)
T 2aeu_A 324 KNYGIITITVAGMPGASKSLRIDLTSRDAERIDDNY--IIKAIVESIKMAFK 373 (374)
T ss_dssp HHHCEECSTTSSSCSSCCSEEEETTSGGGGGSCHHH--HHHHHHHHHHHHTC
T ss_pred HhCCEEEecCCCCCCCCCeEEEEcCCchHHHHHHHH--HHHHHHHHHHHHhc
Confidence 5679987542 333 24689999974 344455888 77888888877654
|
| >2po3_A 4-dehydrase; external aldimine, PLP, aminotransferase, TDP-sugar; HET: T4K; 2.10A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.65 E-value=1.7e-14 Score=167.10 Aligned_cols=277 Identities=15% Similarity=0.093 Sum_probs=186.0
Q ss_pred HHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc---
Q 001989 212 SLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL--- 288 (985)
Q Consensus 212 ~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~--- 288 (985)
.+.++++.+|+++|.+ ++.+++|+|.++++++.++. +||+|+++...|+++...++. .|++++.++.
T Consensus 53 ~~~~l~~~la~~~~~~--~v~~~~ggt~al~~~l~~l~----~gd~Vlv~~~~~~~~~~~~~~----~G~~~~~v~~~~~ 122 (424)
T 2po3_A 53 LVREFEERVAGLAGVR--HAVATCNATAGLQLLAHAAG----LTGEVIMPSMTFAATPHALRW----IGLTPVFADIDPD 122 (424)
T ss_dssp HHHHHHHHHHHHHTSS--EEEEESCHHHHHHHHHHHHT----CCSEEEEESSSCTHHHHHHHH----TTCEEEEECBCTT
T ss_pred HHHHHHHHHHHHhCCC--eEEEeCCHHHHHHHHHHHcC----CCCEEEECCCccHHHHHHHHH----cCCEEEEEecCCC
Confidence 3567889999999985 58899999988888776652 579999999999999987653 5888888764
Q ss_pred ------hhhhc-cCCCEeEEEEEcCCCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCC---CCCcccceEEEecC-c
Q 001989 289 ------KDIDY-KSGDVCGVLVQYPGTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILK---PPGELGADIVVGSA-Q 357 (985)
Q Consensus 289 ------~~l~~-l~~~t~~V~v~~pn~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~---~~~~~GaDi~v~s~-k 357 (985)
++|++ +++++++|++.+ ++|.+.|+++|.++|+++|+++++| +..+.|... +.+.+ .|++++|. |
T Consensus 123 ~~~~d~~~l~~~i~~~~~~v~~~~--~tG~~~~l~~i~~la~~~~~~li~D-ea~~~g~~~~~~~~~~~-~di~~~S~sk 198 (424)
T 2po3_A 123 TGNLDPDQVAAAVTPRTSAVVGVH--LWGRPCAADQLRKVADEHGLRLYFD-AAHALGCAVDGRPAGSL-GDAEVFSFHA 198 (424)
T ss_dssp TSSBCHHHHGGGCCTTEEEEEEEC--GGGCCCCHHHHHHHHHHTTCEEEEE-CTTCTTCEETTEETTSS-SSEEEEECCT
T ss_pred cCCcCHHHHHHhhCcCCcEEEEEC--CCCCcCCHHHHHHHHHHcCCEEEEE-CccccCCeECCeecccc-cCEEEEeCCC
Confidence 34555 777899999876 6899999999999999999999995 344443321 11222 58998886 3
Q ss_pred cccccCCCCCCcEEEEEEc-hhhHhcCCCceeeeeecCCCCc-ceeeecccccccccccccCCCccchhHHHHHHHHHHH
Q 001989 358 RFGVPMGYGGPHAAFLATS-QEYKRMMPGRIVGVSIDSSGKP-ALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYA 435 (985)
Q Consensus 358 ~lg~P~~~GGP~~G~l~~~-~~~~~~lp~~~vG~t~d~~g~~-~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l 435 (985)
..+ +||+.+|++.++ +++.+.+..... .+.. .+.. . ..|+.... ..+ .+++.
T Consensus 199 ~K~----l~~~~~G~~v~~~~~l~~~l~~~~~------~~~~~~~~~-----~-----~~g~~~~~--~~~---~aa~~- 252 (424)
T 2po3_A 199 TKA----VNAFEGGAVVTDDADLAARIRALHN------FGFDLPGGS-----P-----AGGTNAKM--SEA---AAAMG- 252 (424)
T ss_dssp TSS----SCCSSCEEEEESCHHHHHHHHHHHB------TTTTCTTCC-----T-----TCCCBCCC--CHH---HHHHH-
T ss_pred CCC----ccCCCCeEEEeCCHHHHHHHHHHHh------cCccccccc-----c-----ccCcCCCc--CHH---HHHHH-
Confidence 322 233456888888 677655421110 0000 0100 0 00111000 112 12221
Q ss_pred HHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCC---C--cceEEEecC------CHHHHHHHHHHcCceeeeecC
Q 001989 436 VYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLP---F--FDTVKVKCA------DAHAIASAAYKIEMNLRVVDS 504 (985)
Q Consensus 436 ~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~---~--~~~~~~~~~------~~~~v~~~L~~~GI~~~~~~~ 504 (985)
+...++++++.++..++++++.+.|+++.++++...+ . +..+.+..+ +..++.+.|.++||.++....
T Consensus 253 -l~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~L~~~gI~v~~~~~ 331 (424)
T 2po3_A 253 -LTSLDAFPEVIDRNRRNHAAYREHLADLPGVLVADHDRHGLNNHQYVIVEIDEATTGIHRDLVMEVLKAEGVHTRAYFS 331 (424)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHTCSCTTEEECCGGGGSCCCCCCEEEEECHHHHSSCHHHHHHHHHHTTEECBCTTC
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHhccCCCccccCCCCCCccccEEEEEEECCccchhhHHHHHHHHHHCCCceecccC
Confidence 1123567888899999999999999988338886421 1 234445544 278899999999998754211
Q ss_pred -------------------------CeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 505 -------------------------NTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 505 -------------------------~~lris~t~~~t~edId~li~aL~~ 529 (985)
..++++++.++|++|+++++++|..
T Consensus 332 ~~~~~~~~~~~~g~~~~~~~~r~~~~~l~l~~~~~~t~e~i~~~~~~L~~ 381 (424)
T 2po3_A 332 PGCHELEPYRGQPHAPLPHTERLAARVLSLPTGTAIGDDDIRRVADLLRL 381 (424)
T ss_dssp SCGGGSTTTTTSCCCCCHHHHHHHTTEEEECCSTTCCHHHHHHHHHHHHH
T ss_pred CccccchhhhhcCCCCChhHHHHhcCEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 1278888899999999999999974
|
| >3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare} | Back alignment and structure |
|---|
Probab=99.65 E-value=2.5e-15 Score=178.22 Aligned_cols=315 Identities=12% Similarity=0.077 Sum_probs=187.4
Q ss_pred hhhHHHHHHHHHHHHHHHhCCC--ccc-eecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcE
Q 001989 627 AQGYQEMFNNLGEWLCTITGFD--SFS-LQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMK 703 (985)
Q Consensus 627 ~~G~~~~~~e~~~~la~l~G~~--~~~-~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~ 703 (985)
.+|..++.+++.+++.+..|.+ ... ++.++|++++..++.++. ..++++|+++.+.|..+...++..|++
T Consensus 133 ~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~-------~~~gd~Vlv~~p~y~~~~~~~~~~g~~ 205 (500)
T 3tcm_A 133 SQGIHGLRDAIASGIASRDGFPANADDIFLTDGASPGVHLMMQLLI-------RNEKDGILVPIPQYPLYSASIALHGGA 205 (500)
T ss_dssp TTCCHHHHHHHHHHHHHHHSSCCCGGGEEEESSSHHHHHHHHHHHC-------CSTTEEEEEEESCCTHHHHHHHHTTCE
T ss_pred CcChHHHHHHHHHHHHhhcCCCCCcccEEEcCCHHHHHHHHHHHHc-------CCCCCEEEEeCCCcHhHHHHHHHcCCE
Confidence 3566666777777777776743 333 445556665543333221 136789999999888888888899999
Q ss_pred EEEEcCCCC--CCCCHHHHHHHHHhc---CCCEEEEEEEcC-CCccccc--cCHHHHHHHHHHcCCEEEEEccccccccC
Q 001989 704 IVSVGTDAK--GNINIEELRKAAEAN---RDNLSTLMVTYP-STHGVYE--EGIDEICKIIHDNGGQVYMDGANMNAQVG 775 (985)
Q Consensus 704 vv~v~~d~~--g~iD~e~L~~~i~~~---~~~t~~Vvv~~p-n~~G~i~--~di~eI~~la~~~galliVD~a~~~~~~~ 775 (985)
++.++++++ +.+|+++|+++|++. ..++++|++++| |++|.+. .++++|+++|+++|+++++|+++....-.
T Consensus 206 ~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~k~ivl~~p~NPtG~~~s~~~l~~i~~la~~~~~~li~Deay~~~~~~ 285 (500)
T 3tcm_A 206 LVPYYLNESTGWGLETSDVKKQLEDARSRGINVRALVVINPGNPTGQVLAEENQYDIVKFCKNEGLVLLADEVYQENIYV 285 (500)
T ss_dssp EEEEECBTTTTSBCCHHHHHHHHHHHHHTTCEEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCC
T ss_pred EEEEecccccCCCCCHHHHHHHHHHHHhcCCCceEEEEECCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecCccccccC
Confidence 999998765 489999999999831 127899999999 5699885 25788888899999999999997421110
Q ss_pred CCCC--C------cc-----CCc-EEEeCCcccc-cccCCCCCCceEEEEE---cccccCcCCCCccccCCCCCCCCCCC
Q 001989 776 LTSP--G------YI-----GAD-VCHLNLHKTF-CIPHGGGGPGMGPIGV---KKHLAPFLPSHPVVSTGGIPAPEKSQ 837 (985)
Q Consensus 776 l~~p--g------~~-----g~D-i~~~s~hK~l-~~p~g~GGPg~G~i~~---~~~l~~~lp~~~~g~~~~~~~~~~~~ 837 (985)
-..+ . .+ ..+ +++.|++|+| +.| |.++|++++ ++++.+.+....
T Consensus 286 ~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~----G~R~G~~~~~~~~~~~~~~l~~~~-------------- 347 (500)
T 3tcm_A 286 DNKKFHSFKKIVRSLGYGEEDLPLVSYQSVSKGYYGEC----GKRGGYFEITGFSAPVREQIYKIA-------------- 347 (500)
T ss_dssp TTCCCCCHHHHHHHTTCSSSCCCEEEEEESSSTTTCCG----GGCCEEEEEESCCTTHHHHHHHHH--------------
T ss_pred CCCCCCcHHHHHHHhccccCCeEEEEEecCCccCCCCC----ccceEEEEEeCCCHHHHHHHHHHH--------------
Confidence 0001 0 11 122 5567899988 443 567899987 665554332100
Q ss_pred CCCCCCCcchhhhHHHHHHHHHHHH---------hcHHHHHHHHHHHHHHHHHHHHHhhccCCeeecCCCCceeeEEEEE
Q 001989 838 PLGTIAAAPWGSALILPISYTYIAM---------MGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVD 908 (985)
Q Consensus 838 ~~~~i~s~~~g~~~~~~~a~a~l~~---------lg~eGl~~~~~~~~~~a~~l~~~L~~g~~l~~~~~~~~~~~~~iv~ 908 (985)
. ...+++..++.+ +..++.. .-.+.+.++.++..++++++.+.|++..++.+..+.+..+.-+-+.
T Consensus 348 ~-~~~~~~~~~q~~----~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~~g~~~~~~~g~~~~~~~~~ 422 (500)
T 3tcm_A 348 S-VNLCSNITGQIL----ASLVMNPPKASDESYASYKAEKDGILASLARRAKALEHAFNKLEGITCNEAEGAMYVFPQIC 422 (500)
T ss_dssp H-TTCCCCHHHHHH----HHHHHSCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTEECCCCCBTTEECCEEC
T ss_pred h-cccCCCHHHHHH----HHHHhcCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEecCCeEEEEeeeec
Confidence 0 011122122221 1111210 0012234555667888899999998632343323333332111122
Q ss_pred ecCc----cccCCCCHH-H-HHHHHHHCCCccCCC-CC---CCCCEEEEeccCCCCHHHHHHHHccCChhHHHHhhc
Q 001989 909 LRGL----KNTAGIEPE-D-VAKRLMDYGFHGPTM-SW---PVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRLK 975 (985)
Q Consensus 909 ~~~~----~~~~g~~~~-~-v~~~L~~~Gi~~~~~-~~---p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~~ 975 (985)
++.- ....+.... . +.+.|.++||.+... .| +..+.+|+++. .++++|++ +++.|+++++++.
T Consensus 423 lp~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~~~g~~~iRis~~--~~~e~i~~--~i~~l~~~~~~~~ 495 (500)
T 3tcm_A 423 LPQKAIEAAKAANKAPDAFYALRLLESTGIVVVPGSGFGQVPGTWHFRCTIL--PQEDKIPA--VISRFTVFHEAFM 495 (500)
T ss_dssp CCHHHHHHHHHHTSCHHHHHHHHHHHHHCEECEESTTTCCCTTCCBEEEESC--SCTTTHHH--HHHHHHHHHHHHH
T ss_pred CchhhHHHHHhcCCCcHHHHHHHHHHHCCEEEEeCcccCCCCCCCEEEEEEC--CCHHHHHH--HHHHHHHHHHHHH
Confidence 2100 000012222 2 235566779987532 22 22468999998 88999999 7788888877654
|
| >2vi8_A Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, enzyme memory, pyridoxal phosphate, one-carbon metabolism, PLP-dependent enzymes; HET: PLP; 1.67A {Bacillus stearothermophilus} PDB: 2vi9_A* 2via_A* 2vib_A* 1kkj_A* 1kkp_A* 1kl1_A* 1kl2_A* 1yjs_A* 2w7f_A* 2w7d_A* 2w7e_A* 2w7g_A* 2w7h_A* 1yjz_A* 1yjy_A* 2vgu_A* 2vgs_A* 2vgt_A* 2vgv_A* 2vgw_A* ... | Back alignment and structure |
|---|
Probab=99.65 E-value=1.7e-15 Score=173.81 Aligned_cols=274 Identities=12% Similarity=0.079 Sum_probs=179.2
Q ss_pred HHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHH-hhcCCCeEEEEeC------
Q 001989 215 NFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICIT-RADGFDIKVVVSD------ 287 (985)
Q Consensus 215 e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~-~a~~~gi~v~~v~------ 287 (985)
++++.+++++|.+..++ +..+||.+++.++.++ . ++||+|+++...|+++...+.. ...+.+++++.++
T Consensus 73 ~~r~~la~~~g~~~~~i-~~~sGt~a~~~a~~~~-~--~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 148 (405)
T 2vi8_A 73 LARERAKQLFGAEHANV-QPHSGAQANMAVYFTV-L--EHGDTVLGMNLSHGGHLTHGSPVNFSGVQYNFVAYGVDPETH 148 (405)
T ss_dssp HHHHHHHHHHTCSEEEC-CCSSHHHHHHHHHHHH-C--CTTCEEEEECGGGTCCTTTTCTTSHHHHHSEEEEECBCTTTC
T ss_pred HHHHHHHHHhCCCceEE-EecCcHHHHHHHHHHh-c--CCCCEEEEecccccchhcccchhhhccceeEEEecccccccC
Confidence 46789999999986444 3455587777666554 2 3889999999999877542100 0001123555543
Q ss_pred ---chhhhc-cCC-CEeEEEEEcCCCCeeeccHHHHHHHHHhCCcEEEEEecCccccCC-CCCCcc---cceEEEecC-c
Q 001989 288 ---LKDIDY-KSG-DVCGVLVQYPGTEGEVLDYGDFIKNAHANGVKVVMATDLLALTIL-KPPGEL---GADIVVGSA-Q 357 (985)
Q Consensus 288 ---~~~l~~-l~~-~t~~V~v~~pn~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l-~~~~~~---GaDi~v~s~-k 357 (985)
++++++ +++ ++++|++ +|+.+|...|+++|.++|+++|+++++| +.++.|.. .....+ ++|++++|. |
T Consensus 149 ~~d~~~l~~~i~~~~~~~v~~-~~~~~~~~~~l~~i~~l~~~~~~~li~D-ea~~~g~~~~~~~~~~~~~~di~~~s~sK 226 (405)
T 2vi8_A 149 VIDYDDVREKARLHRPKLIVA-AAAAYPRIIDFAKFREIADEVGAYLMVD-MAHIAGLVAAGLHPNPVPYAHFVTTTTHK 226 (405)
T ss_dssp SBCHHHHHHHHHHHCCSEEEE-CCSSCCSCCCHHHHHHHHHHHTCEEEEE-CTTTHHHHHTTSSCCSTTTCSEEEEESSS
T ss_pred CcCHHHHHHHHHhcCCeEEEE-eCCCCCccCCHHHHHHHHHHcCCEEEEE-ccccccccccCcCCCccccCCEEEEeccc
Confidence 345655 654 7888877 5555687779999999999999999995 34444321 111112 689999997 7
Q ss_pred cccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHHHH
Q 001989 358 RFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVY 437 (985)
Q Consensus 358 ~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~ 437 (985)
+|++ ++| |++++++++.+.+.... .+ ...+++|. ....++.+++ ..
T Consensus 227 ~~~g-----~~g-G~~~~~~~~~~~l~~~~---------------------~~--~~~~~~~~---~~~aa~~~al--~~ 272 (405)
T 2vi8_A 227 TLRG-----PRG-GMILCQEQFAKQIDKAI---------------------FP--GIQGGPLM---HVIAAKAVAF--GE 272 (405)
T ss_dssp TTCC-----CSC-EEEEECHHHHHHHHHHH---------------------TT--TTCSSCCH---HHHHHHHHHH--HH
T ss_pred cCCC-----CCC-eEEEEcHHHHHHHHhhh---------------------cc--cccCCCCH---HHHHHHHHHH--HH
Confidence 7753 234 89999988766541000 00 00122222 2232333333 33
Q ss_pred hCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCC-CCcceEEEecC----CHHHHHHHHHHcCceeeee----------
Q 001989 438 HGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGL-PFFDTVKVKCA----DAHAIASAAYKIEMNLRVV---------- 502 (985)
Q Consensus 438 ~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~-~~~~~~~~~~~----~~~~v~~~L~~~GI~~~~~---------- 502 (985)
+..++++++.++..++.+++.+.|+++| +++..+ .....+.+.++ ...++.+.|.++||.+...
T Consensus 273 ~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~~~ 351 (405)
T 2vi8_A 273 ALQDDFKAYAKRVVDNAKRLASALQNEG-FTLVSGGTDNHLLLVDLRPQQLTGKTAEKVLDEVGITVNKNTIPYDPESPF 351 (405)
T ss_dssp HHSHHHHHHHHHHHHHHHHHHHHHHHTT-CEEGGGSCSSSEEEEECGGGTCCHHHHHHHHHHHTEECEEECCTTCSSCTT
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHhCC-CeEecCCCCceEEEEEccCCCCCHHHHHHHHHHcCceeccCcCccccCCCC
Confidence 3346889999999999999999999996 888742 22333445543 2778999999999987642
Q ss_pred cCCeEEEEecc----CCCHHHHHHHHHHHhC
Q 001989 503 DSNTVTASFDE----TTTLEDVDKLFIVFAG 529 (985)
Q Consensus 503 ~~~~lris~t~----~~t~edId~li~aL~~ 529 (985)
.++.+|++++. ..|++|+++++++|..
T Consensus 352 ~~~~iRis~~~~~~~~~~~~~i~~~~~~l~~ 382 (405)
T 2vi8_A 352 VTSGIRIGTAAVTTRGFGLEEMDEIAAIIGL 382 (405)
T ss_dssp TCSEEEEECHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCCceEEeeeeeeecCCCHHHHHHHHHHHHH
Confidence 14679999997 5689999999999874
|
| >1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP; 1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A* 1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=5.2e-14 Score=160.88 Aligned_cols=321 Identities=15% Similarity=0.133 Sum_probs=200.2
Q ss_pred HHHHHHHHHhcCCCccceecCCCCCCCCCcHHHHHHHHhC--CccccccCCChhhHhhhHHHHHHHHHHHHHHhc----C
Q 001989 152 QMIEHMQKLASMNKVYKSFIGMGYYNTHVPPVILRNIMEN--PAWYTQYTPYQAEIAQGRLESLLNFQTMIADLT----G 225 (985)
Q Consensus 152 e~~~~~~~l~~~n~~~~~~lG~g~y~~~~p~~v~~~i~~~--~~~~t~~~pyq~e~sqg~l~~i~e~q~~ia~L~----g 225 (985)
++.+...++...+....+ ++.|..+...|+.+.+++... .. ...|.+. +|.. ++++.+|+++ |
T Consensus 18 ~~~~~~~~~~~~~~~~i~-l~~~~~~~~~~~~v~~a~~~~~~~~-~~~y~~~-----~g~~----~lr~~ia~~~~~~~g 86 (385)
T 1b5p_A 18 AVNAKALELRRQGVDLVA-LTAGEPDFDTPEHVKEAARRALAQG-KTKYAPP-----AGIP----ELREALAEKFRRENG 86 (385)
T ss_dssp HHHHHHHHHHHTTCCCEE-CCCSSCSSCCCHHHHHHHHHHHHTT-CCSCCCT-----TCCH----HHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhcCCCEEE-ecCCCCCCCCCHHHHHHHHHHHhcC-CCCCCCC-----CCCH----HHHHHHHHHHHHHhC
Confidence 455555555443333222 345544444566554343321 11 2234332 2222 3444555544 5
Q ss_pred C--CCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc----------hhhhc
Q 001989 226 L--PMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL----------KDIDY 293 (985)
Q Consensus 226 ~--~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~----------~~l~~ 293 (985)
. ++.++.+++|+|.+++.++.++ . ++||+|+++...|+.+...++. .|.+++.++. ++|++
T Consensus 87 ~~~~~~~i~~t~g~~~al~~~~~~l-~--~~gd~Vlv~~p~y~~~~~~~~~----~g~~~~~v~~~~~~~~~~d~~~l~~ 159 (385)
T 1b5p_A 87 LSVTPEETIVTVGGSQALFNLFQAI-L--DPGDEVIVLSPYWVSYPEMVRF----AGGVVVEVETLPEEGFVPDPERVRR 159 (385)
T ss_dssp CCCCGGGEEEESHHHHHHHHHHHHH-C--CTTCEEEEEESCCTHHHHHHHH----TTCEEEEEECCGGGTTCCCHHHHHT
T ss_pred CCCChHHEEEcCChHHHHHHHHHHh-c--CCCCEEEEcCCCchhHHHHHHH----cCCEEEEeecCcccCCCCCHHHHHH
Confidence 4 4568999999998887776655 2 3899999999999998887753 5778777754 24555
Q ss_pred -cCCCEeEEEEEcC-CCCeeec---cHHHHHHHHHhCCcEEEEEecCccccCC----CCCCcc--cceEEEecC-ccccc
Q 001989 294 -KSGDVCGVLVQYP-GTEGEVL---DYGDFIKNAHANGVKVVMATDLLALTIL----KPPGEL--GADIVVGSA-QRFGV 361 (985)
Q Consensus 294 -l~~~t~~V~v~~p-n~~G~v~---di~~I~~~a~~~galliV~a~~~~lg~l----~~~~~~--GaDi~v~s~-k~lg~ 361 (985)
+++++++|++.+| |.+|.+. ++++|+++|+++|+++++|. ..+.... .+...+ +.+|+++|. |.++.
T Consensus 160 ~l~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De-~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~ 238 (385)
T 1b5p_A 160 AITPRTKALVVNSPNNPTGAVYPKEVLEALARLAVEHDFYLVSDE-IYEHLLYEGEHFSPGRVAPEHTLTVNGAAKAFAM 238 (385)
T ss_dssp TCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEC-TTTTCBSSSCCCCGGGTCTTTEEEEEESTTTTTC
T ss_pred hcCCCCEEEEEeCCCCCCCCCcCHHHHHHHHHHHHHcCCEEEEEc-cchhcccCCCCCCHHHcCCCCEEEEEechhhcCC
Confidence 6778999999998 7899984 59999999999999999953 3332111 111223 668889887 76643
Q ss_pred cCCCCCCc--EEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHHHH--
Q 001989 362 PMGYGGPH--AAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVY-- 437 (985)
Q Consensus 362 P~~~GGP~--~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~-- 437 (985)
|| +|++++++++++.+.. . +...+.+..+ ....+..++ +..
T Consensus 239 ------~G~RiG~~~~~~~~~~~l~~-------------------------~-~~~~~~~~~~-~~~~a~~~~--l~~~~ 283 (385)
T 1b5p_A 239 ------TGWRIGYACGPKEVIKAMAS-------------------------V-SRQSTTSPDT-IAQWATLEA--LTNQE 283 (385)
T ss_dssp ------GGGCCEEEECCHHHHHHHHH-------------------------H-HHTTTCSCCH-HHHHHHHHH--HHCHH
T ss_pred ------cccceEEEEeCHHHHHHHHH-------------------------H-HhhccCCCCH-HHHHHHHHH--HhCCC
Confidence 34 7999998877665410 0 0112222211 111122122 121
Q ss_pred hCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCCCcceEEEecC----CHHHHHHHHHHcCceeeeec----CCeEEE
Q 001989 438 HGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDTVKVKCA----DAHAIASAAYKIEMNLRVVD----SNTVTA 509 (985)
Q Consensus 438 ~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~~~~~~~~~~~----~~~~v~~~L~~~GI~~~~~~----~~~lri 509 (985)
.+.+.++++.++..++.+++.+.|+++| +++..+....-+.+..+ +..++.+.|.++||.+.... ++.+|+
T Consensus 284 ~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gv~v~~g~~f~~~~~iRi 362 (385)
T 1b5p_A 284 ASRAFVEMAREAYRRRRDLLLEGLTALG-LKAVRPSGAFYVLMDTSPIAPDEVRAAERLLEAGVAVVPGTDFAAFGHVRL 362 (385)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT-CCBCCCSBTTEEEEECTTTCSSHHHHHHHHHHTTEECEESGGGTCTTEEEE
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHCC-CeecCCCeeEEEEEecCCCCCCHHHHHHHHHHCCeEEecccccCCCCeEEE
Confidence 0234577788888899999999999886 77653211111223343 27889999999999875421 478999
Q ss_pred EeccCCCHHHHHHHHHHHhC
Q 001989 510 SFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 510 s~t~~~t~edId~li~aL~~ 529 (985)
|++ +++++|++.++.|.+
T Consensus 363 s~~--~~~~~i~~~l~~l~~ 380 (385)
T 1b5p_A 363 SYA--TSEENLRKALERFAR 380 (385)
T ss_dssp ECC--SCHHHHHHHHHHGGG
T ss_pred Eec--CCHHHHHHHHHHHHH
Confidence 987 799999999988864
|
| >3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, , structural genomics, PSI-2, protein structure initiative; 2.50A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=99.65 E-value=2e-15 Score=169.98 Aligned_cols=278 Identities=14% Similarity=0.179 Sum_probs=177.2
Q ss_pred HHHHHHHHHhCCCccceec-CcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcC-CCCC
Q 001989 636 NLGEWLCTITGFDSFSLQP-NAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGT-DAKG 713 (985)
Q Consensus 636 e~~~~la~l~G~~~~~~~~-~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~-d~~g 713 (985)
++++++++++|.+...+.. ++|++++.. +++.+ . +++|+++.+.|..+...++..|++++.+|+ ++++
T Consensus 54 ~lr~~la~~~~~~~~~i~~t~g~~~al~~---~~~~l------~-gd~Vi~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~ 123 (350)
T 3fkd_A 54 TLRQMLAKRNSVDNNAILVTNGPTAAFYQ---IAQAF------R-GSRSLIAIPSFAEYEDACRMYEHEVCFYPSNEDIG 123 (350)
T ss_dssp HHHHHHHHHTTCCGGGEEEESHHHHHHHH---HHHHT------T-TCEEEEEESCCHHHHHHHHHTTCEEEEEETTSCGG
T ss_pred HHHHHHHHHhCcCHHHEEEcCCHHHHHHH---HHHHH------C-CCEEEEeCCCcHHHHHHHHHcCCeEEEEecCCccc
Confidence 6889999999987655444 555555533 33332 2 689999888777666677889999999998 6544
Q ss_pred CCCHHHHHHHHHhcCCCEEEEEEEcCC-CccccccCHHHHHHHHHHcC-CEEEEEcccccccc-CCC---CCCccCCcEE
Q 001989 714 NINIEELRKAAEANRDNLSTLMVTYPS-THGVYEEGIDEICKIIHDNG-GQVYMDGANMNAQV-GLT---SPGYIGADVC 787 (985)
Q Consensus 714 ~iD~e~L~~~i~~~~~~t~~Vvv~~pn-~~G~i~~di~eI~~la~~~g-alliVD~a~~~~~~-~l~---~pg~~g~Di~ 787 (985)
.+++ +++++|++++|+ ++|.+. |+++|.++++.++ .++++|+++..... +.. .....+.+++
T Consensus 124 ~~~~-----------~~~~~v~i~~p~nptG~~~-~~~~l~~l~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~i~ 191 (350)
T 3fkd_A 124 EADF-----------SNMDFCWLCNPNNPDGRLL-QRTEILRLLNDHPDTTFVLDQSYVSFTTEEVIRPADIKGRKNLVM 191 (350)
T ss_dssp GSCC-----------TTCSEEEEESSCTTTCCCC-CHHHHHHHHHHCTTSEEEEECTTTTSCSSCCCCGGGGTTCSSEEE
T ss_pred cCcc-----------CCCCEEEEeCCCCCcCCCC-CHHHHHHHHHhCCCCEEEEECchhhhccCcchhhHHhhcCCCEEE
Confidence 4443 467889999994 699998 8999999999876 79999999842110 100 0113345688
Q ss_pred EeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHH
Q 001989 788 HLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKG 867 (985)
Q Consensus 788 ~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eG 867 (985)
+.|++|+|++| |.++|++++++++.+.+.... .+.+. +.....++.++|.... .
T Consensus 192 ~~S~sK~~~~~----G~r~G~~~~~~~~~~~~~~~~--------------~~~~~------~~~~~~~~~~~l~~~~--~ 245 (350)
T 3fkd_A 192 VYSFSHAYGIP----GLRIGYIVANKDFMKRVAAFS--------------TPWAV------NALAIEAAKFILIHPA--Q 245 (350)
T ss_dssp EEESHHHHSCG----GGCCEEEECCHHHHHHHHTTC--------------CTTCS------CHHHHHHHHHHHHCTT--T
T ss_pred EecCchhccCc----chheEeEEeCHHHHHHHHHhC--------------CCCCC------CHHHHHHHHHHHhCHH--H
Confidence 99999999643 567899998877665543210 01111 1122222334444222 1
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHH-CCCccCCC-CCC--CCC
Q 001989 868 LTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMD-YGFHGPTM-SWP--VPG 943 (985)
Q Consensus 868 l~~~~~~~~~~a~~l~~~L~~g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~-~Gi~~~~~-~~p--~~~ 943 (985)
+.+..++..++++++.+.|++...+...++.+. + +.+.++. + +..++.++|.+ +||.+... .++ ..+
T Consensus 246 ~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~-~--~~~~~~~-----~-~~~~l~~~L~~~~gi~v~~g~~f~~~~~~ 316 (350)
T 3fkd_A 246 FTLPIRKWQRNTVDFITALNRLDGVEVHPSGTT-F--FLLRLKK-----G-TAAELKKYMLEEYNMLIRDASNFRGLDES 316 (350)
T ss_dssp TCCCHHHHHHHHHHHHHHHHHSTTEEECCCSSS-E--EEEEESS-----S-CHHHHHHHHHHTTCEECEECTTSTTCCTT
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCcEECCCCCc-E--EEEECCC-----C-CHHHHHHHHHHHCCEEEEeCccCCCCCCC
Confidence 222233344788889998876323433222222 2 2355541 2 68899999999 89987532 222 258
Q ss_pred EEEEeccCCCCHHHHHHHHccCChhHHHHhhc
Q 001989 944 TLMIEPTESESKSWTGIVMLSSPSEKKLHRLK 975 (985)
Q Consensus 944 ~lris~t~~~t~eeId~~~~~~~l~~~~~~~~ 975 (985)
++||++. +.+|+|+ +++.|+++.++-.
T Consensus 317 ~iRis~~---~~~~~~~--l~~al~~~~~~~~ 343 (350)
T 3fkd_A 317 YVRITTQ---RPAQNQL--FIKALETFLEKYE 343 (350)
T ss_dssp EEEEECC---CHHHHHH--HHHHHHHHHTC--
T ss_pred EEEEEcC---CHHHHHH--HHHHHHHHHHHhc
Confidence 9999984 8999999 6677777665433
|
| >1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase; HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP: c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A* 1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A* 1d7r_A* 1d7v_A* 1z3z_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=1.6e-14 Score=167.72 Aligned_cols=303 Identities=15% Similarity=0.091 Sum_probs=181.6
Q ss_pred HHHHHHHHHHHHhCCCc-cceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcC-CCCcccHHHHHHCC---------
Q 001989 633 MFNNLGEWLCTITGFDS-FSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPV-SAHGTNPATAAMCG--------- 701 (985)
Q Consensus 633 ~~~e~~~~la~l~G~~~-~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~-~~Hg~~~~~a~~~G--------- 701 (985)
...++++.+++++|.+. ..++.++|++|++.++.+++.+ .++++||+.+ .+||.........+
T Consensus 86 ~~~~l~~~la~~~~~~~~~v~~~~gg~ea~~~a~~~~~~~------~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~ 159 (433)
T 1zod_A 86 PVVDLATRLANITPPGLDRALLLSTGAESNEAAIRMAKLV------TGKYEIVGFAQSWHGMTGAAASATYSAGRKGVGP 159 (433)
T ss_dssp HHHHHHHHHHHHSCTTCCEEEEESCHHHHHHHHHHHHHHH------HTCCEEEEETTCCCCSSHHHHHTCCSSCCSSSCC
T ss_pred HHHHHHHHHHHhCCCCcCEEEEeCchHHHHHHHHHHHHHh------hCCCeEEEECCCcCCCChhHHhhcCCccccccCC
Confidence 35578888999998654 3456688998887777665543 1346777754 67887665443211
Q ss_pred --cEEEEEcCCCC------------CCCCHHHHHHHHHhcC-CCEEEEEEEcC-CCccccccC----HHHHHHHHHHcCC
Q 001989 702 --MKIVSVGTDAK------------GNINIEELRKAAEANR-DNLSTLMVTYP-STHGVYEEG----IDEICKIIHDNGG 761 (985)
Q Consensus 702 --~~vv~v~~d~~------------g~iD~e~L~~~i~~~~-~~t~~Vvv~~p-n~~G~i~~d----i~eI~~la~~~ga 761 (985)
..++.++++.. +.+|+++|+++++++. +++++|+++.. |++|.+. + +++|.++|+++|+
T Consensus 160 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~~vi~~p~~~~~G~~~-~~~~~l~~l~~l~~~~~~ 238 (433)
T 1zod_A 160 AAVGSFAIPAPFTYRPRFERNGAYDYLAELDYAFDLIDRQSSGNLAAFIAEPILSSGGIIE-LPDGYMAALKRKCEARGM 238 (433)
T ss_dssp CCTTEEEECCCCTTSCCCEETTEECHHHHHHHHHHHHHHHCCSCEEEEEECSEETTTTCEE-CCTTHHHHHHHHHHHHTC
T ss_pred CCCCceEecCCcccccccCCchhhhHHHHHHHHHHHHHhcCCCCeEEEEEccccCCCCccc-CCHHHHHHHHHHHHHhCC
Confidence 13344544211 1246999999997432 46676665432 4579654 4 9999999999999
Q ss_pred EEEEEccccccccCCCCCC-----ccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCC
Q 001989 762 QVYMDGANMNAQVGLTSPG-----YIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKS 836 (985)
Q Consensus 762 lliVD~a~~~~~~~l~~pg-----~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~ 836 (985)
++|+|++|. +++-..... ...+|++++ .|+|+ +|.++|++++++++.+.+...... +
T Consensus 239 ~li~DEv~~-~~g~~g~~~~~~~~~~~~di~s~--sK~~~-----~G~~ig~~~~~~~~~~~~~~~~~~-------~--- 300 (433)
T 1zod_A 239 LLILDEAQT-GVGRTGTMFACQRDGVTPDILTL--SKTLG-----AGLPLAAIVTSAAIEERAHELGYL-------F--- 300 (433)
T ss_dssp EEEEECTTT-TTTTTSSSSTHHHHTCCCSEEEE--CHHHH-----TTSSCEEEEECHHHHHHHHHTTCC-------C---
T ss_pred EEEEecccc-CCCcCchHhHHhhcCCCCCEEEe--ccccc-----CCCCeeEEEEhHHHHHhhccCCCC-------C---
Confidence 999999985 222111111 124687755 49885 256789999998765443211000 0
Q ss_pred CCCCCCCCcchhhhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhcc---CCee-ecCCCCceeeEEEEEecCc
Q 001989 837 QPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKH---YPIL-FRGVNGTVAHEFIVDLRGL 912 (985)
Q Consensus 837 ~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~g---~~l~-~~~~~~~~~~~~iv~~~~~ 912 (985)
.+. +.+++..++++.+.+..+..+++ .++..+++++++++|++. +... ...+.+.+. .+.+...
T Consensus 301 --~~t----~~~~~~~~~a~~aal~~~~~~~~---~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~g~~~---~i~~~~~ 368 (433)
T 1zod_A 301 --YTT----HVSDPLPAAVGLRVLDVVQRDGL---VARANVMGDRLRRGLLDLMERFDCIGDVRGRGLLL---GVEIVKD 368 (433)
T ss_dssp --CCT----TTTCHHHHHHHHHHHHHHHHTTH---HHHHHHHHHHHHHHHHHHHHHCTTEEEEEEETTEE---EEEEEEE
T ss_pred --CCC----CCcCHHHHHHHHHHHHHHHhCCH---HHHHHHHHHHHHHHHHHHHHhCCCeEEEEEEEEEE---EEEEecC
Confidence 001 11233444445556665544443 345667788888888651 3321 111112222 2333210
Q ss_pred c---ccCCCCHHHHHHHHHHCCCccCCCC-CCCCCEEEEeccCCCCHHHHHHHHccCChhHHHHhh
Q 001989 913 K---NTAGIEPEDVAKRLMDYGFHGPTMS-WPVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRL 974 (985)
Q Consensus 913 ~---~~~g~~~~~v~~~L~~~Gi~~~~~~-~p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~ 974 (985)
. ........++.+.|.++|+.+.... +..++.+||+++..+|++||++ +++.|+++++++
T Consensus 369 ~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~~~lRi~~~~~~t~~~i~~--~l~~l~~~l~~~ 432 (433)
T 1zod_A 369 RRTKEPADGLGAKITRECMNLGLSMNIVQLPGMGGVFRIAPPLTVSEDEIDL--GLSLLGQAIERA 432 (433)
T ss_dssp TTTTEECTTHHHHHHHHHHHTTEECCEECCTTSCCEEEECCCTTCCHHHHHH--HHHHHHHHHHHH
T ss_pred ccccCCChHHHHHHHHHHHHCCCeEeccCCCCCCCEEEEECCcCCCHHHHHH--HHHHHHHHHHHh
Confidence 0 0001236789999999999875432 2223799999999999999999 788888887653
|
| >1b9h_A AHBA synthase, protein (3-amino-5-hydroxybenzoic acid synthase); rifamycin biosynthesis (RIFD gene); HET: PLP; 2.00A {Amycolatopsis mediterranei} SCOP: c.67.1.4 PDB: 1b9i_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=1.3e-14 Score=165.89 Aligned_cols=281 Identities=12% Similarity=0.018 Sum_probs=180.3
Q ss_pred HHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc---
Q 001989 212 SLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL--- 288 (985)
Q Consensus 212 ~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~--- 288 (985)
.+.++++.+|+++|.+ +..++.+||.+++.++.+++. ++||+|+++...|+++...++ ..|++++.++.
T Consensus 39 ~~~~l~~~la~~~~~~--~~i~~~sGt~al~~~l~~l~~--~~gd~Vi~~~~~~~~~~~~~~----~~g~~~~~v~~~~~ 110 (388)
T 1b9h_A 39 EVNSFEREFAAHHGAA--HALAVTNGTHALELALQVMGV--GPGTEVIVPAFTFISSSQAAQ----RLGAVTVPVDVDAA 110 (388)
T ss_dssp HHHHHHHHHHHHTTCS--EEEEESCHHHHHHHHHHHTTC--CTTCEEEEESSSCTHHHHHHH----HTTCEEEEECBCTT
T ss_pred HHHHHHHHHHHHhCCC--eEEEeCCHHHHHHHHHHHcCC--CCcCEEEECCCccHHHHHHHH----HcCCEEEEEecCCC
Confidence 3456889999999987 344566668777766665533 378999999999999998875 35888887764
Q ss_pred ------hhhhc-cCCCEeEEEEEcCCCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCC---CCCcccceEEEec--C
Q 001989 289 ------KDIDY-KSGDVCGVLVQYPGTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILK---PPGELGADIVVGS--A 356 (985)
Q Consensus 289 ------~~l~~-l~~~t~~V~v~~pn~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~---~~~~~GaDi~v~s--~ 356 (985)
++|++ ++++|++|+.. |.+|.+.|+++|.++|+++|+++++| +..+.|... +.+.+| |+.+.| .
T Consensus 111 ~~~~d~~~l~~~i~~~~~~v~~~--n~tG~~~~l~~i~~la~~~~~~li~D-~a~~~g~~~~~~~~~~~~-~i~~~S~s~ 186 (388)
T 1b9h_A 111 TYNLDPEAVAAAVTPRTKVIMPV--HMAGLMADMDALAKISADTGVPLLQD-AAHAHGARWQGKRVGELD-SIATFSFQN 186 (388)
T ss_dssp TCCBCHHHHHHHCCTTEEEECCB--CGGGCCCCHHHHHHHHHHHTCCBCEE-CTTCTTCEETTEEGGGSS-SCEEEECCT
T ss_pred cCCCCHHHHHHhcCcCceEEEEe--CCccCcCCHHHHHHHHHHcCCEEEEe-cchhcCCccCCeeccccc-ceEEEEccC
Confidence 34555 77889888822 56899999999999999999999995 345554322 234566 555555 3
Q ss_pred -ccccccCCCCCCcEEEEEEchh-h--HhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHH
Q 001989 357 -QRFGVPMGYGGPHAAFLATSQE-Y--KRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAA 432 (985)
Q Consensus 357 -k~lg~P~~~GGP~~G~l~~~~~-~--~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa 432 (985)
|.++ |+.+|++.++++ + .+.+.. +.+...+. ....| .....|++...+ .+ .++
T Consensus 187 ~K~l~------g~~~G~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~----------~~~~~g~~~~~~--~~---~~a 243 (388)
T 1b9h_A 187 GKLMT------AGEGGAVVFPDGETEKYETAFL-RHSCGRPR-DDRRY----------FHKIAGSNMRLN--EF---SAS 243 (388)
T ss_dssp TSSSC------SSSCEEEEECTTCHHHHHHHHH-HTBTTCCT-TCSSC----------CCCSCCCBCBCB--HH---HHH
T ss_pred CCccc------CCCeEEEEECCHHHHHHHHHHH-HHhCCCCc-cCccc----------eeecccccCCcC--HH---HHH
Confidence 4443 234588888765 4 343310 00000000 00000 001123322111 11 111
Q ss_pred HHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCC-----CC-cceEEEecCC-----HHHHHHHHHHcCceeee
Q 001989 433 MYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGL-----PF-FDTVKVKCAD-----AHAIASAAYKIEMNLRV 501 (985)
Q Consensus 433 ~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~-----~~-~~~~~~~~~~-----~~~v~~~L~~~GI~~~~ 501 (985)
+.... .+-+++..++..++++++.+.|+++.++++... +. ...+.+.+++ ..++.+.|.++||.++.
T Consensus 244 ~~~~~--~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~ 321 (388)
T 1b9h_A 244 VLRAQ--LARLDEQIAVRDERWTLLSRLLGAIDGVVPQGGDVRADRNSHYMAMFRIPGLTEERRNALVDRLVEAGLPAFA 321 (388)
T ss_dssp HHHHH--HTTHHHHHHHHHHHHHHHHHHHHTSTTCEECCCCTTCCBCCCSEEEEECTTCCHHHHHHHHHHHHHTTCCEEE
T ss_pred HHHHH--HHHHHHHHHHHHHHHHHHHHHhccCCCccccCCCcCCCccceEEEEEEeCCcCcccHHHHHHHHHHCCCCccc
Confidence 11121 234667778888899999999999833887642 11 2345566652 56799999999997743
Q ss_pred ec---------------------------------CCeEEEEeccCC-CHHHHHHHHHHHhC
Q 001989 502 VD---------------------------------SNTVTASFDETT-TLEDVDKLFIVFAG 529 (985)
Q Consensus 502 ~~---------------------------------~~~lris~t~~~-t~edId~li~aL~~ 529 (985)
.. .+.+|++++..+ |++|||+++++|.+
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~t~edi~~~~~~l~~ 383 (388)
T 1b9h_A 322 AFRAIYRTDAFWELGAPDESVDAIARRCPNTDAISSDCVWLHHRVLLAGEPELHATAEIIAD 383 (388)
T ss_dssp CCCCGGGSHHHHHSSCCSSCHHHHHHTCHHHHHHHHHEEEEEGGGGGSCHHHHHHHHHHHHH
T ss_pred ccCccccChHhHhcCCCcccccccccCCHHHHHHHhCeEEecCCCCCCCHHHHHHHHHHHHH
Confidence 21 125999999999 99999999999873
|
| >3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter pylori 26695} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.65 E-value=2.8e-14 Score=162.09 Aligned_cols=302 Identities=11% Similarity=0.033 Sum_probs=193.4
Q ss_pred CCCCCCCCcHHHHHHHHhCCccccccCCChhhHhhhHHHHHHHHHHHHHHhcCC--CCcceeeccchHHHHHHHHHHhhh
Q 001989 173 MGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGL--PMSNASLLDEGTAAAEAMAMCNNI 250 (985)
Q Consensus 173 ~g~y~~~~p~~v~~~i~~~~~~~t~~~pyq~e~sqg~l~~i~e~q~~ia~L~g~--~~~~~sl~~~~ta~~ea~~~a~~~ 250 (985)
.|.-+...|+.+.+++.+.......|.+. +|..+...++.+.+.+.+|. ++.++.+++|+|.+++.++.++.
T Consensus 30 ~~~~~~~~~~~v~~a~~~~~~~~~~y~~~-----~g~~~lr~~la~~l~~~~g~~~~~~~i~~t~g~~~al~~~~~~~~- 103 (376)
T 3ezs_A 30 IGEPQFETPKFIQDALKNHTHSLNIYPKS-----AFEESLRAAQRGFFKRRFKIELKENELISTLGSREVLFNFPSFVL- 103 (376)
T ss_dssp SCCCCSCCCHHHHHHHHTTGGGGGSCCCT-----TCCHHHHHHHHHHHHHHHSCCCCGGGEEEESSSHHHHHHHHHHHT-
T ss_pred CCCCCCCCCHHHHHHHHHhhhhcCCCCCC-----CCCHHHHHHHHHHHHHHhCCCCCHHHEEECcCcHHHHHHHHHHHc-
Confidence 33334446777765655443334445442 22222222333444444587 67789999999988887766542
Q ss_pred hcCC--CCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCch-------hhhc-cCCCEeEEEEEcC-CCCeeecc---HH
Q 001989 251 QKGK--KKTFIIASNCHPQTIDICITRADGFDIKVVVSDLK-------DIDY-KSGDVCGVLVQYP-GTEGEVLD---YG 316 (985)
Q Consensus 251 ~~~~--g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~~-------~l~~-l~~~t~~V~v~~p-n~~G~v~d---i~ 316 (985)
++ ||+|+++...|+++...++ ..|.+++.++.+ ++++ +.+++++|++.+| |.+|.+.+ ++
T Consensus 104 --~~~~gd~vl~~~p~~~~~~~~~~----~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~p~nptG~~~~~~~l~ 177 (376)
T 3ezs_A 104 --FDYQNPTIAYPNPFYQIYEGAAK----FIKAKSLLMPLTKENDFTPSLNEKELQEVDLVILNSPNNPTGRTLSLEELI 177 (376)
T ss_dssp --TTCSSCEEEEEESCCTHHHHHHH----HTTCEEEEEECCGGGTSCCCCCHHHHHHCSEEEECSSCTTTCCCCCHHHHH
T ss_pred --CCCCCCEEEEecCCcHhHHHHHH----HcCCEEEEcccCCCCCcchhHHhhhccCCCEEEEcCCCCCcCCCCCHHHHH
Confidence 36 8999999999999888765 358888887653 3444 5567899999888 67999865 77
Q ss_pred HHHHHHHhCCcEEEEEecCccccCCC--CCC-----------cccceEEEecC-ccccccCCCCCCcEEEEEEchhhHhc
Q 001989 317 DFIKNAHANGVKVVMATDLLALTILK--PPG-----------ELGADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRM 382 (985)
Q Consensus 317 ~I~~~a~~~galliV~a~~~~lg~l~--~~~-----------~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~ 382 (985)
+|+++|+++|+++++|. ..+..... ... .++.++++.|. |.||.| |..+|++.+++++++.
T Consensus 178 ~i~~~~~~~~~~li~De-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~----G~r~G~~~~~~~~~~~ 252 (376)
T 3ezs_A 178 SWVKLALKHDFILINDE-CYSEIYENTPPPSLLEACMLAGNEAFKNVLVIHSLSKRSSAP----GLRSGFIAGDSRLLEK 252 (376)
T ss_dssp HHHHHHHHHTCEEEEEC-TTTTCBSSSCCCCHHHHHHHTTCTTCTTEEEEEESTTTTTCG----GGCCEEEEECHHHHHH
T ss_pred HHHHHHHHcCcEEEEEc-cchhhccCCCCCCHHHccccccccccCcEEEEecchhccCCc----cceeEEEeeCHHHHHH
Confidence 88888999999999953 33321111 110 46788999997 877532 3456899888887765
Q ss_pred CCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHh
Q 001989 383 MPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLK 462 (985)
Q Consensus 383 lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~ 462 (985)
+... +...+.+. +.....+..++ +. ..+.++++.++..++.+++.+.|+
T Consensus 253 ~~~~--------------------------~~~~~~~~-~~~~~~a~~~~--l~--~~~~~~~~~~~~~~~~~~l~~~l~ 301 (376)
T 3ezs_A 253 YKAF--------------------------RAYLGYTS-ANAIQKASEAA--WL--DDRHAEFFRNIYANNLKLARKIFK 301 (376)
T ss_dssp HHHH--------------------------HTTTCCCC-CHHHHHHHHHH--HH--CSHHHHHHHHHHHHHHHHHHHHST
T ss_pred HHHH--------------------------HhhhcCCC-ChHHHHHHHHH--Hh--CcHHHHHHHHHHHHHHHHHHHHhc
Confidence 5100 00001111 11112222222 12 245578888999999999999987
Q ss_pred cCCCeEEcCCCCcceEEEecCCHHHHHHHHHH-cCceeeee--------cCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 463 KLGTVEVQGLPFFDTVKVKCADAHAIASAAYK-IEMNLRVV--------DSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 463 ~~g~~~~~~~~~~~~~~~~~~~~~~v~~~L~~-~GI~~~~~--------~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
| +....... -+.+..++..++.++|.+ +||.+... .++.+|++++. |++||++++++|.+
T Consensus 302 --~-~~~~~~~~--~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~~iRis~~~--~~~~i~~~l~~l~~ 370 (376)
T 3ezs_A 302 --N-TLIYPYSF--YVYLPVQNGENFAKTLYQNEGIITLPALYLGRNRIGADYVRLALVY--DTPLLEKPLEIIET 370 (376)
T ss_dssp --T-CCCCSBSS--EEEEECSCHHHHHHHHHHHHCCBCEEGGGGCSTTTTTTEEEEECCS--CHHHHHHHHHHHHH
T ss_pred --C-CCCCCcce--EEEEECCCHHHHHHHHHHhCCEEEeCcHHhCCCCCCCCeEEEEEcC--CHHHHHHHHHHHHH
Confidence 5 54211111 233455467889999987 89987531 24789999873 99999999999874
|
| >1v72_A Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2.05A {Pseudomonas putida} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.64 E-value=2.1e-14 Score=161.40 Aligned_cols=273 Identities=17% Similarity=0.095 Sum_probs=183.5
Q ss_pred HHHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHH--HHHhhcCC-CeEEEEeC
Q 001989 211 ESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDI--CITRADGF-DIKVVVSD 287 (985)
Q Consensus 211 ~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~--~~~~a~~~-gi~v~~v~ 287 (985)
+...++++++++++| +..++.+++|||.+++.++.+. .++||+|+++...|++.... +... . |.+++.++
T Consensus 43 ~~~~~l~~~la~~~g-~~~~v~~~~~gt~a~~~al~~~---~~~gd~vi~~~~~~~~~~~~~~~~~~---~~g~~~~~v~ 115 (356)
T 1v72_A 43 ELTAQVKRKFCEIFE-RDVEVFLVPTGTAANALCLSAM---TPPWGNIYCHPASHINNDECGAPEFF---SNGAKLMTVD 115 (356)
T ss_dssp HHHHHHHHHHHHHHT-SCCEEEEESCHHHHHHHHHHTS---CCTTEEEEECTTSHHHHSSTTHHHHH---TTSCEEEECC
T ss_pred hHHHHHHHHHHHHhC-CCCcEEEeCCccHHHHHHHHHh---cCCCCEEEEcCccchhhhhchHHHHH---hCCcEEEEec
Confidence 345678889999999 4445778899997776665543 23789999999999887655 4432 2 77888876
Q ss_pred c-------hhhhc--cCC-------CEeEEEEEcCCCCee---eccHHHHHHHHHhCCcEEEEEecCcccc---C-CCCC
Q 001989 288 L-------KDIDY--KSG-------DVCGVLVQYPGTEGE---VLDYGDFIKNAHANGVKVVMATDLLALT---I-LKPP 344 (985)
Q Consensus 288 ~-------~~l~~--l~~-------~t~~V~v~~pn~~G~---v~di~~I~~~a~~~galliV~a~~~~lg---~-l~~~ 344 (985)
. ++|++ +.+ ++++|++++|+.+|. .+++++|.++|+++|+++++|. ....+ . -..+
T Consensus 116 ~~~~~~d~~~l~~~~i~~~~~~~~~~~~~v~~~~~~~tG~~~~~~~l~~i~~~~~~~~~~li~D~-a~~~~~~~~~~~~~ 194 (356)
T 1v72_A 116 GPAAKLDIVRLRERTREKVGDVHTTQPACVSITQATEVGSIYTLDEIEAIGDVCKSSSLGLHMDG-SRFANALVSLGCSP 194 (356)
T ss_dssp CGGGCCCHHHHHHHTTSSTTCTTSCEEEEEEEESSCTTSCCCCHHHHHHHHHHHHHTTCEEEEEE-TTHHHHHHHHTCCT
T ss_pred CCCCeEcHHHHHHHhhhcchhhccCCceEEEEEcCCCCCccCCHHHHHHHHHHHHHcCCeEEEEc-hhhHhHhccCCCCH
Confidence 4 34543 343 689999998877999 6789999999999999999953 22210 0 0122
Q ss_pred Cc----ccceEEEecC-ccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCC
Q 001989 345 GE----LGADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSN 419 (985)
Q Consensus 345 ~~----~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsn 419 (985)
.. .++|+++.+. |+ +.| .|.|++++++++.+++.. .+...++
T Consensus 195 ~~~~~~~~~d~~~~s~sK~-g~~-----~G~g~~~~~~~~~~~~~~-------------------------~~~~~~~-- 241 (356)
T 1v72_A 195 AEMTWKAGVDALSFGATKN-GVL-----AAEAIVLFNTSLATEMSY-------------------------RRKRAGH-- 241 (356)
T ss_dssp TTTTGGGTCCEEEECCGGG-TCS-----SCEEEEESSGGGHHHHHH-------------------------HHHHTTC--
T ss_pred HHhhhhhcCCEEEEecccC-CCc-----CccEEEEECHHHHhhHHH-------------------------HhhccCc--
Confidence 22 4789998887 54 433 245788888877655410 0000111
Q ss_pred ccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCCCcceEEEecCCHHHHHHHHHHcCcee
Q 001989 420 ICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDTVKVKCADAHAIASAAYKIEMNL 499 (985)
Q Consensus 420 i~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~~~L~~~GI~~ 499 (985)
..+ .+..+..++ +..+..+.+.++.++..++.+++++.|+++.|+++..+...+.+.+..+ .++.++|.++||.+
T Consensus 242 ~~~-~~~~~~~~~--~~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~--~~~~~~l~~~gi~v 316 (356)
T 1v72_A 242 LSS-KMRFLSAQI--DAYLTDDLWLRNARKANAAAQRLAQGLEGLGGVEVLGGTEANILFCRLD--SAMIDALLKAGFGF 316 (356)
T ss_dssp CCS-STHHHHHHH--HHHTSTTHHHHHHHHHHHHHHHHHHHHTTCTTEEEESCCCSSEEEEEEC--HHHHHHHHHTTCBC
T ss_pred hhh-hHHHHHHHH--HHHHHhhhHHHHHHHHHHHHHHHHHHHhhCCCcEEccCCCccEEEEEcC--HHHHHHHHhcCeEE
Confidence 111 112222222 2445444566777888899999999999873388764333333444544 47888999999987
Q ss_pred ee--ecCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 500 RV--VDSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 500 ~~--~~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
.. ..++.+|++++..+|++|+++++++|.+
T Consensus 317 ~~g~~~~~~iRi~~~~~~~~~~i~~~~~~l~~ 348 (356)
T 1v72_A 317 YHDRWGPNVVRFVTSFATTAEDVDHLLNQVRL 348 (356)
T ss_dssp BCSSSSTTEEEEECCTTCCHHHHHHHHHHHHH
T ss_pred eccccCCCeEEEEecCCCCHHHHHHHHHHHHH
Confidence 63 2257899999999999999999999975
|
| >3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics, structural genomics consortium, disease mutation, phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens} PDB: 3pdx_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=2.1e-14 Score=166.70 Aligned_cols=272 Identities=11% Similarity=0.126 Sum_probs=182.3
Q ss_pred HHHHHHHHHhcC-----CCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc
Q 001989 214 LNFQTMIADLTG-----LPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL 288 (985)
Q Consensus 214 ~e~q~~ia~L~g-----~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~ 288 (985)
.++++.+|++++ .++.++.+++|+|.+++.++.++. ++||+|+++...|+.+...++. .|++++.++.
T Consensus 99 ~~lr~~la~~~~~~~~~~~~~~v~~t~g~t~al~~~~~~l~---~~gd~vl~~~p~~~~~~~~~~~----~g~~~~~~~~ 171 (427)
T 3dyd_A 99 LSSREEIASYYHCPEAPLEAKDVILTSGCSQAIDLCLAVLA---NPGQNILVPRPGFSLYKTLAES----MGIEVKLYNL 171 (427)
T ss_dssp HHHHHHHHHHHCBTTBCCCGGGEEEESSHHHHHHHHHHHHC---CTTCEEEEEESCCTHHHHHHHH----TTCEEEEEEE
T ss_pred HHHHHHHHHHHhhcCCCCChHHEEEecCcHHHHHHHHHHhc---CCCCEEEEcCCCchhHHHHHHH----cCCEEEEEec
Confidence 457789999998 677889999999988887766542 3789999999999988877653 5777776643
Q ss_pred ----------hhhhc-cCCCEeEEEEEcC-CCCeeecc---HHHHHHHHHhCCcEEEEEecCcc-ccC----CCCCCccc
Q 001989 289 ----------KDIDY-KSGDVCGVLVQYP-GTEGEVLD---YGDFIKNAHANGVKVVMATDLLA-LTI----LKPPGELG 348 (985)
Q Consensus 289 ----------~~l~~-l~~~t~~V~v~~p-n~~G~v~d---i~~I~~~a~~~galliV~a~~~~-lg~----l~~~~~~G 348 (985)
+++++ +++++++|++.+| |.+|.+.| +++|+++|+++|+++++|. ..+ ++. ..+...++
T Consensus 172 ~~~~~~~~d~~~l~~~l~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~~i~De-ay~~~~~~g~~~~~~~~~~ 250 (427)
T 3dyd_A 172 LPEKSWEIDLKQLEYLIDEKTACLIVNNPSNPCGSVFSKRHLQKILAVAARQCVPILADE-IYGDMVFSDCKYEPLATLS 250 (427)
T ss_dssp EGGGTTEECHHHHHSSCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEEC-TTTTCBCSSCCCCCGGGGC
T ss_pred ccccCCCCCHHHHHHHhccCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEc-CchhhccCCCcCccHHHhC
Confidence 45666 7788999999998 78999998 9999999999999999953 222 111 11112344
Q ss_pred ce---EEEecC-ccccccCCCCCCcEEEEEEch-------hhHhcCCCceeeeeecCCCCcceeeecccccccccccccC
Q 001989 349 AD---IVVGSA-QRFGVPMGYGGPHAAFLATSQ-------EYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKAT 417 (985)
Q Consensus 349 aD---i~v~s~-k~lg~P~~~GGP~~G~l~~~~-------~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~at 417 (985)
.| |+++|. |.|+.| |-.+|++++++ ++.+.+. ...+ .+
T Consensus 251 ~~~~vi~~~S~sK~~~~~----G~riG~~~~~~~~~~~~~~i~~~l~-------------------------~~~~--~~ 299 (427)
T 3dyd_A 251 TDVPILSCGGLAKRWLVP----GWRLGWILIHDRRDIFGNEIRDGLV-------------------------KLSQ--RI 299 (427)
T ss_dssp SSCCEEEEEESTTTSSCG----GGCCEEEEEECSTTSSHHHHHHHHH-------------------------HHHH--HH
T ss_pred CCCcEEEEeeccccCCCc----CcceEEEEecCcchhhHHHHHHHHH-------------------------HHHh--cc
Confidence 44 667776 766532 22368888763 2222210 0000 01
Q ss_pred CCccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCC--CCcceEEEec---C--C-HHHHH
Q 001989 418 SNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGL--PFFDTVKVKC---A--D-AHAIA 489 (985)
Q Consensus 418 sni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~--~~~~~~~~~~---~--~-~~~v~ 489 (985)
.+ . ..+...++...+.....+.++++.++..++.+++.+.|+++.++++..+ ..+--+.+.. + . ..++.
T Consensus 300 ~~--~-~~~~~~a~~~~L~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~p~~g~~~~~~l~~~~~~~~~~~~~~~ 376 (427)
T 3dyd_A 300 LG--P-CTIVQGALKSILCRTPGEFYHNTLSFLKSNADLCYGALAAIPGLRPVRPSGAMYLMVGIEMEHFPEFENDVEFT 376 (427)
T ss_dssp CC--S-CHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHSTTEEEECCSBTTEEEEEECGGGCTTCSSHHHHH
T ss_pred CC--C-CHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhcCCCceecCCCeeEEEEEecCHhhcCCCCCHHHHH
Confidence 11 1 1111111112234445667888999999999999999999833887532 2221222321 1 2 67888
Q ss_pred HHHH-HcCceeeee----cCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 490 SAAY-KIEMNLRVV----DSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 490 ~~L~-~~GI~~~~~----~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
++|. ++||.+... .++.+|++++ +++++|+++++.|.+
T Consensus 377 ~~l~~~~gV~v~~g~~~~~~~~iRis~~--~~~e~i~~~l~~l~~ 419 (427)
T 3dyd_A 377 ERLVAEQSVHCLPATCFEYPNFIRVVIT--VPEVMMLEACSRIQE 419 (427)
T ss_dssp HHHHHHHCEECEEGGGGTCTTEEEEESC--SCHHHHHHHHHHHHH
T ss_pred HHHHHHCCEEEECCcccCCCCeEEEEEC--CCHHHHHHHHHHHHH
Confidence 8885 789988542 2588999986 789999999998874
|
| >2dkj_A Serine hydroxymethyltransferase; PLP dependent enzyme, structural genomics; HET: PLP; 1.15A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.7e-15 Score=173.94 Aligned_cols=271 Identities=13% Similarity=0.057 Sum_probs=176.6
Q ss_pred HHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCe--EEEEe-------
Q 001989 216 FQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDI--KVVVS------- 286 (985)
Q Consensus 216 ~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi--~v~~v------- 286 (985)
+++.+++++|.+.+++. +.+||.++++++.++ . ++||+|+++...|+++...+.. ++..|. +.+.+
T Consensus 74 ar~~la~~~g~~~~~i~-~~sGt~a~~~~~~~~-~--~~gd~Vl~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~ 148 (407)
T 2dkj_A 74 AIERAKALFGAAWANVQ-PHSGSQANMAVYMAL-M--EPGDTLMGMDLAAGGHLTHGSR-VNFSGKLYKVVSYGVRPDTE 148 (407)
T ss_dssp HHHHHHHHHTCSEEECC-CSSHHHHHHHHHHHH-C--CTTCEEEEECGGGTCCGGGTCT-TSHHHHHSEEEEECCCTTTS
T ss_pred HHHHHHHHhCCCcceEE-ecchHHHHHHHHHHh-c--CCCCEEEEecccccCccchHHH-HHhcCceEEEEecCCCcccC
Confidence 45699999999865553 445565666665544 2 3889999999999887421110 111122 33333
Q ss_pred --Cchhhhc-cC-CCEeEEEEEcCCCCeeeccHHHHHHHHHhCCcEEEEEecCccccCC-----CCCCcccceEEEecC-
Q 001989 287 --DLKDIDY-KS-GDVCGVLVQYPGTEGEVLDYGDFIKNAHANGVKVVMATDLLALTIL-----KPPGELGADIVVGSA- 356 (985)
Q Consensus 287 --~~~~l~~-l~-~~t~~V~v~~pn~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l-----~~~~~~GaDi~v~s~- 356 (985)
|++++++ +. +++++|++.+|++ |.+.|+++|.++|+++|+++++| +..+.|.. ..+.+ .+|++++|.
T Consensus 149 ~~d~~~l~~~l~~~~~~~v~~~~p~~-~~~~~l~~i~~l~~~~~~~li~D-ea~~~g~~~~~~~~~~~~-~~di~~~s~s 225 (407)
T 2dkj_A 149 LIDLEEVRRLALEHRPKVIVAGASAY-PRFWDFKAFREIADEVGAYLVVD-MAHFAGLVAAGLHPNPLP-YAHVVTSTTH 225 (407)
T ss_dssp SCCHHHHHHHHHHHCCSEEEECCSSC-CSCCCHHHHHHHHHHHTCEEEEE-CTTTHHHHHTTCSCCCTT-TCSEEEEESS
T ss_pred ccCHHHHHHHHhhcCCeEEEEecccc-CCCCCHHHHHHHHHHcCCEEEEE-ccccccccccCccCCccc-cccEEEEecc
Confidence 2345665 65 3789998877754 57889999999999999999995 34343221 11122 379999998
Q ss_pred ccccccCCCCCCcEEEEEEc-hhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHH
Q 001989 357 QRFGVPMGYGGPHAAFLATS-QEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYA 435 (985)
Q Consensus 357 k~lg~P~~~GGP~~G~l~~~-~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l 435 (985)
|+|+ ||.+|+++++ +++.+.+.... .+. ..++.+. ....++.+++
T Consensus 226 K~l~------g~~~G~~~~~~~~~~~~l~~~~---------------------~~~--~~~~~~~---~~~~a~~~al-- 271 (407)
T 2dkj_A 226 KTLR------GPRGGLILSNDPELGKRIDKLI---------------------FPG--IQGGPLE---HVIAGKAVAF-- 271 (407)
T ss_dssp GGGC------CCSCEEEEESCHHHHHHHHHHH---------------------TTT--TCSSCCH---HHHHHHHHHH--
T ss_pred ccCC------CCCceEEEECCHHHHHHHHhhh---------------------ccc--ccCCCcH---HHHHHHHHHH--
Confidence 7553 3334899999 67766541100 000 0112221 1222333333
Q ss_pred HHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCC-CCcceEEEecC----CHHHHHHHHHHcCceeeee--------
Q 001989 436 VYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGL-PFFDTVKVKCA----DAHAIASAAYKIEMNLRVV-------- 502 (985)
Q Consensus 436 ~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~-~~~~~~~~~~~----~~~~v~~~L~~~GI~~~~~-------- 502 (985)
..+..++++++.++..++.+++.+.|+++| ++++.+ ....-+.+.++ ...++.+.|.++||.+...
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~ 350 (407)
T 2dkj_A 272 FEALQPEFKEYSRLVVENAKRLAEELARRG-YRIVTGGTDNHLFLVDLRPKGLTGKEAEERLDAVGITVNKNAIPFDPKP 350 (407)
T ss_dssp HHHHSHHHHHHHHHHHHHHHHHHHHHHHTT-CEEGGGSCSSSEEEEECGGGTCCHHHHHHHHHHTTEECEECCCTTCSSC
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHhCC-ceeecCCCCceEEEEECcccCCCHHHHHHHHHHcCceecCCcCcccccc
Confidence 343356889999999999999999999996 888742 22334555554 2778999999999987542
Q ss_pred --cCCeEEEEeccC----CCHHHHHHHHHHHhC
Q 001989 503 --DSNTVTASFDET----TTLEDVDKLFIVFAG 529 (985)
Q Consensus 503 --~~~~lris~t~~----~t~edId~li~aL~~ 529 (985)
.++.+|++++.+ .|++|+++++++|.+
T Consensus 351 ~~~~~~iRis~~~~~~~~~~~~~i~~~~~~l~~ 383 (407)
T 2dkj_A 351 PRVTSGIRIGTPAITTRGFTPEEMPLVAELIDR 383 (407)
T ss_dssp TTTCSEEEEECHHHHHTTCCGGGHHHHHHHHHH
T ss_pred ccCCCceeeecccccccCCCHHHHHHHHHHHHH
Confidence 146799999864 799999999999874
|
| >3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP, cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP; 2.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.64 E-value=3.3e-14 Score=166.09 Aligned_cols=304 Identities=13% Similarity=0.111 Sum_probs=192.3
Q ss_pred CCCCCCCCCcHHHHHHHHhCCc--cccccCCChhhHhhhHHHHHHHHHHHHHHh----cCC--CCcceeeccchHHHHHH
Q 001989 172 GMGYYNTHVPPVILRNIMENPA--WYTQYTPYQAEIAQGRLESLLNFQTMIADL----TGL--PMSNASLLDEGTAAAEA 243 (985)
Q Consensus 172 G~g~y~~~~p~~v~~~i~~~~~--~~t~~~pyq~e~sqg~l~~i~e~q~~ia~L----~g~--~~~~~sl~~~~ta~~ea 243 (985)
+.|..+...|+.+.+++.+.-. ....|++. +|.. ++++.+|++ +|. ++.++.+++|++.++++
T Consensus 63 ~~g~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~-----~g~~----~lr~~ia~~l~~~~g~~~~~~~v~~t~G~~~al~~ 133 (447)
T 3b46_A 63 GQGFFSYSPPQFAIKEAQKALDIPMVNQYSPT-----RGRP----SLINSLIKLYSPIYNTELKAENVTVTTGANEGILS 133 (447)
T ss_dssp CCCSCSSCCCHHHHHHHHHHTTSGGGGSCCCT-----TCCH----HHHHHHHHHHTTTTTSCCCGGGEEEESHHHHHHHH
T ss_pred cCCCCCCCCCHHHHHHHHHHHhCcCCCCCCCC-----CCCH----HHHHHHHHHHHHhcCCCCChhhEEEeCCHHHHHHH
Confidence 4554344456666544443211 13445442 2322 344455555 454 45689999999988887
Q ss_pred HHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeC--------------------chhhhc-cCCCEeEEE
Q 001989 244 MAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSD--------------------LKDIDY-KSGDVCGVL 302 (985)
Q Consensus 244 ~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~--------------------~~~l~~-l~~~t~~V~ 302 (985)
++.++ . ++||+|++++..|+.+...++. .|.+++.++ +++|++ +++++++|+
T Consensus 134 ~~~~l-~--~~gd~Vlv~~p~y~~~~~~~~~----~g~~~~~v~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~ 206 (447)
T 3b46_A 134 CLMGL-L--NAGDEVIVFEPFFDQYIPNIEL----CGGKVVYVPINPPKELDQRNTRGEEWTIDFEQFEKAITSKTKAVI 206 (447)
T ss_dssp HHHHH-C--CTTCEEEEEESCCTTHHHHHHH----TTCEEEEEEEECCGGGGTSCBCSTTSEECHHHHHTTCCTTEEEEE
T ss_pred HHHHH-c--CCCCEEEEeCCCchhHHHHHHH----cCCEEEEEeCCCccccccccccccCcccCHHHHHHhhccCCeEEE
Confidence 77665 2 3789999999999998887653 466665553 245666 778899999
Q ss_pred EEcC-CCCeee---ccHHHHHHHHHhCCcEEEEEecCccccCC----CC-----CCcccceEEEecC-ccccccCCCCCC
Q 001989 303 VQYP-GTEGEV---LDYGDFIKNAHANGVKVVMATDLLALTIL----KP-----PGELGADIVVGSA-QRFGVPMGYGGP 368 (985)
Q Consensus 303 v~~p-n~~G~v---~di~~I~~~a~~~galliV~a~~~~lg~l----~~-----~~~~GaDi~v~s~-k~lg~P~~~GGP 368 (985)
+.+| |.+|.+ +++++|+++|+++|+++++| +..+.... .+ ++.++.|++++|. |.|+.| |-
T Consensus 207 l~~p~nptG~~~~~~~l~~i~~l~~~~~~~li~D-e~~~~~~~~g~~~~~~~~~~~~~~~~i~i~S~sK~~~~~----G~ 281 (447)
T 3b46_A 207 INTPHNPIGKVFTREELTTLGNICVKHNVVIISD-EVYEHLYFTDSFTRIATLSPEIGQLTLTVGSAGKSFAAT----GW 281 (447)
T ss_dssp EESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEE-CTTTTCBCSSCCCCGGGSCHHHHTTEEEEEEHHHHTTCT----TS
T ss_pred EeCCCCCCCcccCHHHHHHHHHHHHHcCcEEEEe-ccchhcccCCCCcCHHHcCCCCCCcEEEEecCchhcCCc----ch
Confidence 9988 789988 47999999999999999995 33332111 11 1245889999997 877532 22
Q ss_pred cEEEEEE-chhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhH-HHHHHHHHHHHHhC-cchHHH
Q 001989 369 HAAFLAT-SQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQA-LLANMAAMYAVYHG-PEGLKT 445 (985)
Q Consensus 369 ~~G~l~~-~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~-l~a~~aa~~l~~~g-~~Gl~~ 445 (985)
-+|++++ ++++++.+... + ... ..+++.. ..++.+++ .... .+.+++
T Consensus 282 riG~~~~~~~~l~~~l~~~----------------------~----~~~--~~~~~~~~~~a~~~aL--~~~~~~~~~~~ 331 (447)
T 3b46_A 282 RIGWVLSLNAELLSYAAKA----------------------H----TRI--CFASPSPLQEACANSI--NDALKIGYFEK 331 (447)
T ss_dssp CCEEEECSCHHHHHHHHHH----------------------H----HHH--TSSCCHHHHHHHHHHH--HHHHHHTHHHH
T ss_pred hhEEEEeCCHHHHHHHHHH----------------------H----hhc--cCCCChHHHHHHHHHH--hCCcchHHHHH
Confidence 3799999 88777654100 0 000 1111122 22222222 2211 334778
Q ss_pred HHHHHHHHHHHHHHHHhcCCCeEEcCCCCcceEEEecC-----------------C-HHHHHHHHH-HcCceeeee----
Q 001989 446 IAQRVHGLAGTFALGLKKLGTVEVQGLPFFDTVKVKCA-----------------D-AHAIASAAY-KIEMNLRVV---- 502 (985)
Q Consensus 446 i~~~~~~~a~~l~~~L~~~g~~~~~~~~~~~~~~~~~~-----------------~-~~~v~~~L~-~~GI~~~~~---- 502 (985)
+.++..++.+++.+.|+++| +++..+....-+.++++ . ..++.++|. ++||.+...
T Consensus 332 ~~~~~~~~~~~l~~~L~~~g-~~~~~~~~g~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~ 410 (447)
T 3b46_A 332 MRQEYINKFKIFTSIFDELG-LPYTAPEGTYFVLVDFSKVKIPEDYPYPEEILNKGKDFRISHWLINELGVVAIPPTEFY 410 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHT-CCEECCSBSSEEEEECTTCCCCTTCCCCGGGSSSCHHHHHHHHHHHHTCEECBCGGGGS
T ss_pred HHHHHHHHHHHHHHHHHHCC-CeecCCCeeEEEEEecccccCccccccccccccCCCHHHHHHHHHHhCCEEEECchHhC
Confidence 88899999999999999886 77653211111223322 2 568888886 579987432
Q ss_pred -------cCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 503 -------DSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 503 -------~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
..+.+|+|+. .++++|++.++.|..
T Consensus 411 ~~~~~~~~~~~iRls~~--~~~e~l~~~~~~l~~ 442 (447)
T 3b46_A 411 IKEHEKAAENLLRFAVC--KDDAYLENAVERLKL 442 (447)
T ss_dssp CGGGGGGGTTEEEEECC--SCHHHHHHHHHHGGG
T ss_pred CCCccCCCCCEEEEEEe--CCHHHHHHHHHHHHH
Confidence 1578999998 489999999998874
|
| >1uu1_A Histidinol-phosphate aminotransferase; histidine biosynthesis, pyridoxal phosphate, complete proteome; HET: PMP HSA; 2.38A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1uu0_A 1h1c_A* 1uu2_A* 2f8j_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=5.1e-14 Score=157.71 Aligned_cols=292 Identities=10% Similarity=0.056 Sum_probs=195.4
Q ss_pred cCCCCCCCCCcHHHHHHHHhCC--ccccccCCChhhHhhhHHHHHHHHHHHHHHhcC---CCCcceeeccchHHHHHHHH
Q 001989 171 IGMGYYNTHVPPVILRNIMENP--AWYTQYTPYQAEIAQGRLESLLNFQTMIADLTG---LPMSNASLLDEGTAAAEAMA 245 (985)
Q Consensus 171 lG~g~y~~~~p~~v~~~i~~~~--~~~t~~~pyq~e~sqg~l~~i~e~q~~ia~L~g---~~~~~~sl~~~~ta~~ea~~ 245 (985)
++.|.++...|+.+.+++.+.- .-...|.. .+ ..++++.+|+++| .++.++.+++|+|.+++.++
T Consensus 24 l~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~------~~----~~~lr~~la~~~~~~~~~~~~v~~~~G~~~al~~~~ 93 (335)
T 1uu1_A 24 LALNENPFPFPEDLVDEVFRRLNSDALRIYYD------SP----DEELIEKILSYLDTDFLSKNNVSVGNGADEIIYVMM 93 (335)
T ss_dssp ESSCCCSSCCCHHHHHHHHHTCCGGGGGSCCC------SS----CHHHHHHHHHHHTCSSCCGGGEEEESSHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHhhhhhhhcCCC------Cc----hHHHHHHHHHHcCCCCCCHHHEEEcCChHHHHHHHH
Confidence 4555555556777765655432 11222321 11 4567889999999 78888999999997777655
Q ss_pred HHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCchh-----hhccCCCEeEEEEEcC-CCCeeeccHHHHH
Q 001989 246 MCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDLKD-----IDYKSGDVCGVLVQYP-GTEGEVLDYGDFI 319 (985)
Q Consensus 246 ~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~~~-----l~~l~~~t~~V~v~~p-n~~G~v~di~~I~ 319 (985)
.++ ||+|+++ ..|+.+...++. .|.+++.++.++ ++++ +++++|++.+| |.+|.+.|.+++.
T Consensus 94 ~~~------gd~Vl~~-p~y~~~~~~~~~----~g~~~~~v~~~~~~~~d~~~l-~~~~~v~l~~p~nptG~~~~~~~l~ 161 (335)
T 1uu1_A 94 LMF------DRSVFFP-PTYSCYRIFAKA----VGAKFLEVPLTKDLRIPEVNV-GEGDVVFIPNPNNPTGHVFEREEIE 161 (335)
T ss_dssp HHS------SEEEECS-SSCHHHHHHHHH----HTCEEEECCCCTTSCCCCCCC-CTTEEEEEESSCTTTCCCCCHHHHH
T ss_pred HHh------CCcEEEC-CCcHHHHHHHHH----cCCeEEEeccCCCCCCCHHHc-CCCCEEEEeCCCCCCCCCCCHHHHH
Confidence 543 6899999 999998877653 488888887641 2225 67899998988 7899999999999
Q ss_pred HHHHhCCcEEEEEecCcc-ccC---CCCCCcccceEEEecC-ccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecC
Q 001989 320 KNAHANGVKVVMATDLLA-LTI---LKPPGELGADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDS 394 (985)
Q Consensus 320 ~~a~~~galliV~a~~~~-lg~---l~~~~~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~ 394 (985)
++++.+| ++++| +..+ +.. +...+.++.|++++|. |.|+.| |..+|++++++++.+.+...
T Consensus 162 ~l~~~~~-~li~D-e~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~----G~r~G~~~~~~~~~~~l~~~-------- 227 (335)
T 1uu1_A 162 RILKTGA-FVALD-EAYYEFHGESYVDFLKKYENLAVIRTFSKAFSLA----AQRVGYVVASEKFIDAYNRV-------- 227 (335)
T ss_dssp HHHHTTC-EEEEE-CTTHHHHCCCCGGGGGTCSSEEEEEESTTTTTCG----GGCCEEEEECHHHHHHHHHH--------
T ss_pred HHHHhCC-EEEEE-CcchhhcchhHHHHhhhCCCEEEEecchhhcCCc----ccCeEEEEeCHHHHHHHHHh--------
Confidence 9999998 77774 3333 211 1112346778999997 776432 23369999988877654100
Q ss_pred CCCcceeeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCCC
Q 001989 395 SGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPF 474 (985)
Q Consensus 395 ~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~~ 474 (985)
+...+.|. ....+..++ +.. .+.++++.++..++.+++.+.|+++| +++... .
T Consensus 228 ------------------~~~~~~~~---~~~~~~~~~--l~~--~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~-~ 280 (335)
T 1uu1_A 228 ------------------RLPFNVSY---VSQMFAKVA--LDH--REIFEERTKFIVEERERMKSALREMG-YRITDS-R 280 (335)
T ss_dssp ------------------SCTTCSCH---HHHHHHHHH--HHT--HHHHHHHHHHHHHHHHHHHHHHHHHT-CCBCCC-C
T ss_pred ------------------cCCCCcCH---HHHHHHHHH--hCC--HHHHHHHHHHHHHHHHHHHHHHHHCC-cEEcCC-C
Confidence 00001111 112222222 222 34678888899999999999999886 765422 1
Q ss_pred cceEEEecCC--HHHHHHHHHHcCceeeeecCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 475 FDTVKVKCAD--AHAIASAAYKIEMNLRVVDSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 475 ~~~~~~~~~~--~~~v~~~L~~~GI~~~~~~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
..-+.+..++ ..++.+.|.++||.+.. .++.+|+|++ +.+|+++++++|+.
T Consensus 281 ~~~~~~~~~~~~~~~~~~~l~~~gi~v~~-~~~~iRis~~---~~~~i~~~~~~l~~ 333 (335)
T 1uu1_A 281 GNFVFVFMEKEEKERLLEHLRTKNVAVRS-FREGVRITIG---KREENDMILRELEV 333 (335)
T ss_dssp SSEEEEECCTHHHHHHHHHHHHHTEEEEE-ETTEEEEECC---CHHHHHHHHHHHHC
T ss_pred CeEEEEECCCCCHHHHHHHHHHCCEEEEE-CCCeEEEEeC---CHHHHHHHHHHHHh
Confidence 2234566664 67899999999999876 4678999985 57899999999974
|
| >1xi9_A Putative transaminase; alanine aminotransferase, southeast collaboratory for structural genomics, secsg; HET: PLP; 2.33A {Pyrococcus furiosus} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.64 E-value=2.1e-14 Score=165.34 Aligned_cols=268 Identities=13% Similarity=0.138 Sum_probs=179.7
Q ss_pred HHHHHHHhc------CCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc-
Q 001989 216 FQTMIADLT------GLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL- 288 (985)
Q Consensus 216 ~q~~ia~L~------g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~- 288 (985)
+++.+|+++ +.++.++.+++|+|.+++.++.++ . ++||+|+++...|+++...++. .|++++.++.
T Consensus 83 l~~~la~~l~~~~g~~~~~~~v~~t~g~~~al~~~~~~l-~--~~gd~Vl~~~~~~~~~~~~~~~----~g~~~~~v~~~ 155 (406)
T 1xi9_A 83 LRKAIVEREKRKNGVDITPDDVRVTAAVTEALQLIFGAL-L--DPGDEILVPGPSYPPYTGLVKF----YGGKPVEYRTI 155 (406)
T ss_dssp HHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHHHHH-C--CTTCEEEEEESCCHHHHHHHHH----TTCEEEEEEEE
T ss_pred HHHHHHHHHHHhcCCCCCHHHEEEcCChHHHHHHHHHHh-C--CCCCEEEEcCCCCccHHHHHHH----cCCEEEEeecC
Confidence 445555555 355678999999998888777654 2 3789999999999998887753 4777766643
Q ss_pred ---------hhhhc-cCCCEeEEEEEcC-CCCeeecc---HHHHHHHHHhCCcEEEEEecCccccCCC----CCCc--cc
Q 001989 289 ---------KDIDY-KSGDVCGVLVQYP-GTEGEVLD---YGDFIKNAHANGVKVVMATDLLALTILK----PPGE--LG 348 (985)
Q Consensus 289 ---------~~l~~-l~~~t~~V~v~~p-n~~G~v~d---i~~I~~~a~~~galliV~a~~~~lg~l~----~~~~--~G 348 (985)
++|++ +++++++|++.+| |++|.+.+ +++|.++|+++|+++++|. ..+.+... +... .+
T Consensus 156 ~~~~~~~d~~~l~~~l~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~De-~~~~~~~~~~~~~~~~~~~~ 234 (406)
T 1xi9_A 156 EEEDWQPDIDDIRKKITDRTKAIAVINPNNPTGALYDKKTLEEILNIAGEYEIPVISDE-IYDLMTYEGEHISPGSLTKD 234 (406)
T ss_dssp GGGTSEECHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEEC-TTTTCBSSSCCCCHHHHCSS
T ss_pred CCcCCcCCHHHHHHhhCcCceEEEEECCCCCCCCCcCHHHHHHHHHHHHHcCCEEEEEc-CccccccCCCCCCHHHcCCC
Confidence 34555 7778999999988 78998864 9999999999999999953 33322211 1122 36
Q ss_pred c-eEEEecC-ccccccCCCCCCcEEEEE--Ech----hhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCc
Q 001989 349 A-DIVVGSA-QRFGVPMGYGGPHAAFLA--TSQ----EYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNI 420 (985)
Q Consensus 349 a-Di~v~s~-k~lg~P~~~GGP~~G~l~--~~~----~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni 420 (985)
. |++++|. |.|+.| |..+|+++ +++ ++++.+.. .+....+.|.
T Consensus 235 ~~~i~~~s~sK~~~~~----G~r~G~~~~~~~~~~~~~l~~~l~~-------------------------~~~~~~~~~~ 285 (406)
T 1xi9_A 235 VPVIVMNGLSKVYFAT----GWRLGYMYFVDPENKLSEVREAIDR-------------------------LARIRLCPNT 285 (406)
T ss_dssp SCEEEEEESTTTTCCG----GGCCEEEEEECTTCTTHHHHHHHHH-------------------------HHHHTCCSCS
T ss_pred ceEEEEeccccccCCC----ccEEEEEEEecCchhHHHHHHHHHH-------------------------HHHhhcCCCH
Confidence 6 8999997 877422 22368888 777 66654410 0000011111
Q ss_pred cchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCCCcceEE-EecC-----CHHHHHHHHH-
Q 001989 421 CTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDTVK-VKCA-----DAHAIASAAY- 493 (985)
Q Consensus 421 ~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~~~~~~~-~~~~-----~~~~v~~~L~- 493 (985)
....++.++ +. .+.++++++.++..++.+++.+.|+++.++++..+. ..-+. +..+ +..++.+.|.
T Consensus 286 ---~~~~a~~~~--l~-~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~l~~ 358 (406)
T 1xi9_A 286 ---PAQFAAIAG--LT-GPMDYLKEYMKKLKERRDYIYKRLNEIPGISTTKPQ-GAFYIFPKIEVGPWKNDKEFVLDVLH 358 (406)
T ss_dssp ---HHHHHHHHH--HH-SCCHHHHHHHHHHHHHHHHHHHHHHTSTTEECCCCC-BSSEECCEECSCSCSSHHHHHHHHHH
T ss_pred ---HHHHHHHHH--Hh-CCcHHHHHHHHHHHHHHHHHHHHHHhCCCCeeecCC-eeEEEEEecCccCCCCHHHHHHHHHH
Confidence 122222222 22 345668889999999999999999998338876421 11121 1222 2788998887
Q ss_pred HcCceeeee------cCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 494 KIEMNLRVV------DSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 494 ~~GI~~~~~------~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
++||.+... .++.+|++++ +++++|+++++.|.+
T Consensus 359 ~~gi~v~~g~~f~~~~~~~lRis~~--~~~~~i~~~~~~l~~ 398 (406)
T 1xi9_A 359 NAHVLFVHGSGFGEYGAGHFRAVFL--PPIEILEEAMDRFEK 398 (406)
T ss_dssp HHCEECEEGGGGCGGGTTBEEEECC--SCHHHHHHHHHHHHH
T ss_pred hCCEEEeCchhcCCCCCCEEEEEec--CCHHHHHHHHHHHHH
Confidence 889987542 1578999998 899999999998874
|
| >3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=1.7e-14 Score=163.93 Aligned_cols=271 Identities=14% Similarity=0.113 Sum_probs=183.8
Q ss_pred HHHHHHHHhc-CCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc-----
Q 001989 215 NFQTMIADLT-GLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL----- 288 (985)
Q Consensus 215 e~q~~ia~L~-g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~----- 288 (985)
++++.+|+++ +.++.++.+++|+|.+++.++.++ . ++||+|+++...|+++...++. .|.+++.++.
T Consensus 67 ~l~~~la~~~~~~~~~~v~~~~g~~~a~~~~~~~l-~--~~gd~Vl~~~~~~~~~~~~~~~----~g~~~~~v~~~~~~~ 139 (375)
T 3op7_A 67 AFKKSVSQLYTGVKPEQILQTNGATGANLLVLYSL-I--EPGDHVISLYPTYQQLYDIPKS----LGAEVDLWQIEEENG 139 (375)
T ss_dssp HHHHHHHTTSSSCCGGGEEEESHHHHHHHHHHHHH-C--CTTCEEEEEESSCTHHHHHHHH----TTCEEEEEEEEGGGT
T ss_pred HHHHHHHHHhccCChhhEEEcCChHHHHHHHHHHh-c--CCCCEEEEeCCCchhHHHHHHH----cCCEEEEEeccccCC
Confidence 5778999988 577788999999998888777665 2 3889999999999998887653 5777766543
Q ss_pred -----hhhhc-cCCCEeEEEEEcC-CCCeeecc---HHHHHHHHHhCCcEEEEEecCccccCCCC-C---CcccceEEEe
Q 001989 289 -----KDIDY-KSGDVCGVLVQYP-GTEGEVLD---YGDFIKNAHANGVKVVMATDLLALTILKP-P---GELGADIVVG 354 (985)
Q Consensus 289 -----~~l~~-l~~~t~~V~v~~p-n~~G~v~d---i~~I~~~a~~~galliV~a~~~~lg~l~~-~---~~~GaDi~v~ 354 (985)
++|++ +++++++|++++| |.+|.+.| +++|.++|+++|+++++|. ..+...... + ..++.+++++
T Consensus 140 ~~~d~~~l~~~l~~~~~~v~~~~~~nptG~~~~~~~l~~i~~la~~~~~~li~De-~~~~~~~~~~~~~~~~~~~~i~~~ 218 (375)
T 3op7_A 140 WLPDLEKLRQLIRPTTKMICINNANNPTGAVMDRTYLEELVEIASEVGAYILSDE-VYRSFSELDVPSIIEVYDKGIAVN 218 (375)
T ss_dssp TEECHHHHHHHCCTTCCEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEEC-CSCCCSSSCCCCHHHHCTTEEEEE
T ss_pred CCCCHHHHHHhhccCCeEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEc-ccccccccCCCchhhhcCCEEEEe
Confidence 45666 7889999999988 78999999 9999999999999999953 323211111 1 2356678888
Q ss_pred cC-ccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHH
Q 001989 355 SA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAM 433 (985)
Q Consensus 355 s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~ 433 (985)
|. |.++.| |..+|++.+++++.+.+... ++ . ...+++ .+...++..
T Consensus 219 s~sK~~~~~----G~r~G~v~~~~~l~~~~~~~-------------------------~~-~--~~~~~~-~~~~~~~~~ 265 (375)
T 3op7_A 219 SLSKTYSLP----GIRIGWVAANHQVTDILRDY-------------------------RD-Y--TMICAG-VFDDLVAQL 265 (375)
T ss_dssp ESSSSSSCG----GGCCEEEECCHHHHHHHTTT-------------------------GG-G--TTSCCC-HHHHHHHHH
T ss_pred EChhhcCCc----ccceEEEEeCHHHHHHHHHH-------------------------Hh-h--hccCCC-cHHHHHHHH
Confidence 87 877533 23458998888887765210 00 0 111111 121111111
Q ss_pred HHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCC--CcceEEEecCC-HHHHHHHH-HHcCceeeeec----CC
Q 001989 434 YAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLP--FFDTVKVKCAD-AHAIASAA-YKIEMNLRVVD----SN 505 (985)
Q Consensus 434 ~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~--~~~~~~~~~~~-~~~v~~~L-~~~GI~~~~~~----~~ 505 (985)
.+. ...+.++++.++..++.+++.+.|++.+++++..+. .+.-+.+..+. ..++.++| .++||.+.... ++
T Consensus 266 ~l~-~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~ 344 (375)
T 3op7_A 266 ALA-HYQEILERNRHILEENLAILDQWIEEEPLVSYIRPAVVSTSFVKIAVDMPMEDFCLQLLQEHGVLLVPGNRFERDG 344 (375)
T ss_dssp HHH-THHHHHHHHHHHHHHHHHHHHHHHHHCTTEEECCCSSSSCEEEEECCSSCHHHHHHHHHHHHCEECEEGGGGTCTT
T ss_pred HHh-ccHHHHHHHHHHHHHHHHHHHHHHhhCCCceEecCCCeEEEeEEcCCCCCHHHHHHHHHHhCCEEEeChhhhCCCC
Confidence 122 123346777777788999999999987448776322 22223333333 77888887 57899875431 58
Q ss_pred eEEEEeccCCCHHHHHHHHHHHhC
Q 001989 506 TVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 506 ~lris~t~~~t~edId~li~aL~~ 529 (985)
.+|++++. +.++|+++++.|.+
T Consensus 345 ~iRi~~~~--~~~~i~~~l~~l~~ 366 (375)
T 3op7_A 345 YVRLGFAC--EQETLIKGLEKLSQ 366 (375)
T ss_dssp EEEECCCS--CHHHHHHHHHHHHH
T ss_pred eEEEEecC--CHHHHHHHHHHHHH
Confidence 89999775 44899999988874
|
| >3pj0_A LMO0305 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, lyase; HET: LLP MSE; 1.80A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.64 E-value=6.7e-16 Score=174.38 Aligned_cols=288 Identities=13% Similarity=0.070 Sum_probs=172.7
Q ss_pred HHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCC--EEEEcCCCCcccH---HHHHHCCcEEEEEc
Q 001989 634 FNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRN--VCIIPVSAHGTNP---ATAAMCGMKIVSVG 708 (985)
Q Consensus 634 ~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~--~IIv~~~~Hg~~~---~~a~~~G~~vv~v~ 708 (985)
..++++++++++|.+.. ++.++|+++++.++.++.. +++ .|+++...|.... ..+...|++++.+|
T Consensus 50 ~~~l~~~la~~~~~~~~-i~~~~g~~a~~~a~~~~~~--------~g~~~vvi~~~~~~~~~~~~~~~~~~~g~~~~~v~ 120 (359)
T 3pj0_A 50 IEDFETKIAKILGKQSA-VFFPSGTMAQQIALRIWAD--------RKENRRVAYHPLSHLEIHEQDGLKELQQITPLLLG 120 (359)
T ss_dssp HHHHHHHHHHHHTCSEE-EEESCHHHHHHHHHHHHHH--------HHTCCEEEECTTCHHHHSSTTHHHHHHCCEEEECS
T ss_pred HHHHHHHHHHHhCCCcE-EEeCCHHHHHHHHHHHHHh--------cCCCcEEEEeccceeeehhcchHHHhcCceEEecC
Confidence 56788999999998775 4457888877655554432 223 3566655543221 12246799999998
Q ss_pred CCCCCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCc-cccc--cCHHHHHHHHHHcCCEEEEEcccccccc-CCC-CC--C
Q 001989 709 TDAKGNINIEELRKAAEANRDNLSTLMVTYP-STH-GVYE--EGIDEICKIIHDNGGQVYMDGANMNAQV-GLT-SP--G 780 (985)
Q Consensus 709 ~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~-G~i~--~di~eI~~la~~~galliVD~a~~~~~~-~l~-~p--g 780 (985)
. +++.+|+++|+++ . +++++|++++| |++ |.+. .++++|+++|+++|+++|+|+++..... ... .+ -
T Consensus 121 ~-~~~~~d~~~l~~~-~---~~~~~v~~~~p~n~~~G~~~~~~~l~~l~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~ 195 (359)
T 3pj0_A 121 T-ANQLLTIDDIKSL-R---EPVSSVLIELPQREIGGQLPAFEELEKISEYCHEQGISLHLDGARLWEITPFYQKSAEEI 195 (359)
T ss_dssp C-TTSCCCHHHHHTC-S---SCCSEEEEESSBGGGTSBCCCHHHHHHHHHHHHHHTCEEEEEETTCGGGHHHHTCCHHHH
T ss_pred C-cCCCcCHHHHHhc-c---CCceEEEEEecccCCCcccCCHHHHHHHHHHHHHcCCEEEEECcchhcchhhhCCCHHHh
Confidence 7 5688999999987 4 78999999999 455 6775 1355559999999999999998742211 011 11 1
Q ss_pred ccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHH
Q 001989 781 YIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYI 860 (985)
Q Consensus 781 ~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l 860 (985)
..++|+++.++||+|+ ||+.|+++.++++.+.+.... .. ..++..+. .. .+.++.+.+
T Consensus 196 ~~~~d~~~~s~sK~~~------~~~gg~~~~~~~l~~~~~~~~-~~-----------~~~~~~~~---~~-~~~a~~~~l 253 (359)
T 3pj0_A 196 CALFDSVYVSFYKGIG------GIAGAILAGNDDFVQEAKIWK-RR-----------YGGDLISL---YP-YILSADYYF 253 (359)
T ss_dssp HTTCSEEEEESSSTTC------CSSCEEEEECHHHHHHHHHHH-HH-----------TTCCCSCC---HH-HHHHHHHHH
T ss_pred hccCCEEEEeccccCC------CcceEEEECCHHHHHHHHHHH-HH-----------hCCCcchh---HH-HHHHHHHHH
Confidence 2367999999999885 343488888877665442100 00 00011110 11 112222333
Q ss_pred HHhcHHHHHHHHHHHHHHHHHHHHHhhccCCeee-cCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCC-
Q 001989 861 AMMGSKGLTEASKIAILNANYMAKRLEKHYPILF-RGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMS- 938 (985)
Q Consensus 861 ~~lg~eGl~~~~~~~~~~a~~l~~~L~~g~~l~~-~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~- 938 (985)
... + +..++..++++++.+.|++..++.+ ..+.... .+.+.++.. .+.+..++.+.|.++||.+....
T Consensus 254 ~~~----~-~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~--~~~~~~~~~---~~~~~~~l~~~l~~~GV~v~~g~~ 323 (359)
T 3pj0_A 254 EKR----I-GKMAEYFEAAKGLAERFNSCSGVKTVPEVPVSN--MFHVYFENS---ADEIGAILTKIQDETGVGISGYLQ 323 (359)
T ss_dssp HHH----G-GGHHHHHHHHHHHHHHHHTSTTEEEESSSCSSS--EEEEEESSC---HHHHHHHHHHHHHHHCEECCSCCE
T ss_pred HHH----H-HHhHHHHHHHHHHHHHHhhCCCceeeccCCcce--EEEEEecCc---cchhHHHHHHHHHhcCcEecCCcc
Confidence 221 1 3334567788899999987333322 1111222 234555410 01235788999999999876532
Q ss_pred C--CCCCEEEEeccC---CCCHHHHHHHHccCChhH
Q 001989 939 W--PVPGTLMIEPTE---SESKSWTGIVMLSSPSEK 969 (985)
Q Consensus 939 ~--p~~~~lris~t~---~~t~eeId~~~~~~~l~~ 969 (985)
+ +..+.+|+++.. ..+.+++++ .++.|.+
T Consensus 324 ~~~~~~~~~r~~i~~~~~~~~~e~l~~--~l~~l~~ 357 (359)
T 3pj0_A 324 EKSADVCAFEVSVGDAFAEIPAKNLEL--VFRCLEK 357 (359)
T ss_dssp EEETTEEEEEEECCTTGGGSCHHHHHH--HHHHHHH
T ss_pred ccCCCceEEEEEecCccccCCHHHHHH--HHHHHHh
Confidence 2 223578998863 367888888 5454443
|
| >3nmy_A Xometc, cystathionine gamma-lyase-like protein; Cys-Met metabolism PLP-dependent enzyme family, CYST gamma lyase, pyridoxal-phosphate; HET: PLP; 2.07A {Xanthomonas oryzae PV} SCOP: c.67.1.0 PDB: 3e6g_A* 3nnp_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=6.1e-15 Score=169.70 Aligned_cols=272 Identities=16% Similarity=0.118 Sum_probs=181.8
Q ss_pred HHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHh-hcCCCeEEEEeCch--
Q 001989 213 LLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITR-ADGFDIKVVVSDLK-- 289 (985)
Q Consensus 213 i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~-a~~~gi~v~~v~~~-- 289 (985)
..++++.+|++.|.+ .+.++.+|++++++ ++++ . ++||+|++++..|+.....+..+ .+..|++++.++.+
T Consensus 69 ~~~l~~~la~l~g~~--~~~~~~sG~~Ai~~-~~~l-~--~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~d~ 142 (400)
T 3nmy_A 69 RFAYERCVAALEGGT--RAFAFASGMAATST-VMEL-L--DAGSHVVAMDDLYGGTFRLFERVRRRTAGLDFSFVDLTDP 142 (400)
T ss_dssp HHHHHHHHHHHHTCS--EEEEESSHHHHHHH-HHTT-S--CTTCEEEEESSCCHHHHHHHHHTHHHHHCCEEEEECTTSH
T ss_pred HHHHHHHHHHHhCCC--CEEEecCHHHHHHH-HHHH-c--CCCCEEEEeCCCchHHHHHHHHhhHhhcCeEEEEECCCCH
Confidence 345778999999987 36677888888776 3332 2 38899999999999888887665 55579999999764
Q ss_pred -hhhc-cCCCEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCCCCCcccceEEEecC-ccccccCCC
Q 001989 290 -DIDY-KSGDVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKPPGELGADIVVGSA-QRFGVPMGY 365 (985)
Q Consensus 290 -~l~~-l~~~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~~~~~~GaDi~v~s~-k~lg~P~~~ 365 (985)
++++ ++++|++|++.+| |.+|.+.|+++|+++||++|++++|| +.++.+....|.++|+|+++.|. |.|++|
T Consensus 143 ~~l~~~i~~~~~~v~~e~~~np~G~~~~l~~i~~la~~~g~~livD-e~~~~~~~~~~~~~g~div~~S~sK~l~g~--- 218 (400)
T 3nmy_A 143 AAFKAAIRADTKMVWIETPTNPMLKLVDIAAIAVIARKHGLLTVVD-NTFASPMLQRPLSLGADLVVHSATKYLNGH--- 218 (400)
T ss_dssp HHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEE-CTTTHHHHCCGGGGTCSEEEEETTTTTTCS---
T ss_pred HHHHHHhccCCCEEEEECCCCCCCeeecHHHHHHHHHHcCCEEEEE-CCCcccccCChhhcCCcEEEecCccccCCC---
Confidence 4556 8889999999988 78999999999999999999999995 45555555567789999999998 877653
Q ss_pred CCCcEE-EEEE-chhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcchH
Q 001989 366 GGPHAA-FLAT-SQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGL 443 (985)
Q Consensus 366 GGP~~G-~l~~-~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl 443 (985)
|.+-.| ++.+ ++++.+++.. .++.-+ +.. .++. +. +...+.+.+
T Consensus 219 g~~~gG~~vv~~~~~~~~~l~~-------------------------~~~~~g--~~~--~~~~---a~--~~l~~l~~l 264 (400)
T 3nmy_A 219 SDMVGGIAVVGDNAELAEQMAF-------------------------LQNSIG--GVQ--GPFD---SF--LALRGLKTL 264 (400)
T ss_dssp SSCCCEEEEECSCHHHHHHHHH-------------------------HHHHHC--CBC--CHHH---HH--HHHHHHTTH
T ss_pred CCcceeEEEEeCCHHHHHHHHH-------------------------HHHhcC--CCC--CHHH---HH--HHHHhHhHH
Confidence 112235 3433 4555544310 000001 000 1111 11 122233456
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCeEEc-CC-----C-----------CcceEEEecCC----HHHHHHHHHHcCceee--
Q 001989 444 KTIAQRVHGLAGTFALGLKKLGTVEVQ-GL-----P-----------FFDTVKVKCAD----AHAIASAAYKIEMNLR-- 500 (985)
Q Consensus 444 ~~i~~~~~~~a~~l~~~L~~~g~~~~~-~~-----~-----------~~~~~~~~~~~----~~~v~~~L~~~GI~~~-- 500 (985)
+...++..+++.++.+.|++...++-+ .+ + ...-+.|.+++ +..+.+.|.-.++-++
T Consensus 265 ~~r~~~~~~~a~~l~~~L~~~p~v~~V~~p~l~~~~~~~~~~~~~~g~G~~~~~~l~~~~~~~~~~~~~l~~~~~~~s~G 344 (400)
T 3nmy_A 265 PLRMRAHCENALALAQWLETHPAIEKVIYPGLASHPQHVLAKRQMSGFGGIVSIVLKGGFDAAKRFCEKTELFTLAESLG 344 (400)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETTHHHHHHHHHHHCSSSEECSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEeEEECCCCCCCcCHHHHHHhCCCCCceEEEEeCCcHHHHHHHHHcCCcceEecCCC
Confidence 777788899999999999987545533 11 1 12346677765 2333333332221110
Q ss_pred -------------------------eecCCeEEEEeccCCCHHHHHHHHHHHh
Q 001989 501 -------------------------VVDSNTVTASFDETTTLEDVDKLFIVFA 528 (985)
Q Consensus 501 -------------------------~~~~~~lris~t~~~t~edId~li~aL~ 528 (985)
.+.++.+|+|++..++++.|+.|.++|.
T Consensus 345 ~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~liRlsvGle~~~dli~dl~~al~ 397 (400)
T 3nmy_A 345 GVESLVNHPAVMTHASIPVARREQLGISDALVRLSVGIEDLGDLRGDLERALV 397 (400)
T ss_dssp SSSCEEECTTTTTTTTSCHHHHHHHTCCTTEEEEECCSSCHHHHHHHHHHHHC
T ss_pred CCcceeeCccccccccCCHHHHHhcCCCcCeEEEEeCcCCHHHHHHHHHHHHh
Confidence 0124789999999988888888888886
|
| >2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A {Mesorhizobium SP} PDB: 2ykv_A* 2yku_A* 2ykx_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=1.5e-17 Score=194.37 Aligned_cols=340 Identities=12% Similarity=0.079 Sum_probs=204.7
Q ss_pred HHHHHHHHHHHhccccCcccccccccccccCCCccccccccccccccccCCCCchhhhhhHHHHHHHHHHHHHHHh-CCC
Q 001989 570 EHELLRYIHLLQSKELSLCHSMIPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTIT-GFD 648 (985)
Q Consensus 570 e~e~~~~l~~l~~~~~~~~~~~~~lG~~t~~~~~~~~~~~~~~~~f~~~~p~~p~e~~~G~~~~~~e~~~~la~l~-G~~ 648 (985)
+.+..+|++..++-. ...||++++.+..+...+... .....+|. +...++++.|++++ +.+
T Consensus 96 D~dG~~yiD~~~~~~------~~~lGh~~p~V~~Av~~q~~~--~~~~~~~~----------~~~~~Lae~L~~~~p~~~ 157 (465)
T 2yky_A 96 DVDGHAYVNFLGEYT------AGLFGHSHPVIRAAVERALAV--GLNLSTQT----------ENEALFAEAVCDRFPSID 157 (465)
Confidence 355667777654322 346898888877665544322 11112222 22457888999998 443
Q ss_pred ccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEE-cCCCCcccHHHH---HHCCc--EEEEEcCCCCCCCCHHHHHH
Q 001989 649 SFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCII-PVSAHGTNPATA---AMCGM--KIVSVGTDAKGNINIEELRK 722 (985)
Q Consensus 649 ~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv-~~~~Hg~~~~~a---~~~G~--~vv~v~~d~~g~iD~e~L~~ 722 (985)
. .++.+||++|+++++.++|.+ .++++||+ ...+||...... ...|+ .++.+|. .|+++|++
T Consensus 158 ~-v~~~nSGseA~~~Aik~ar~~------tgr~~ii~~~~~yHG~~~~~~sg~~~~g~~~~~~~~~~-----~d~~~l~~ 225 (465)
T 2yky_A 158 L-VRFTNSGTEANLMALATATAI------TGRKTVLAFDGGYHGGLLNFASGHAPTNAPYHVVLGVY-----NDVEGTAD 225 (465)
Confidence 3 466789999998888877654 34567777 456787654433 12344 3444444 38999999
Q ss_pred HHHhcCCCEEEEEEEcC-CCcccccc---CHHHHHHHHHHcCCEEEEEccccccccC-CCCCCcc--CCcEEEeCCcccc
Q 001989 723 AAEANRDNLSTLMVTYP-STHGVYEE---GIDEICKIIHDNGGQVYMDGANMNAQVG-LTSPGYI--GADVCHLNLHKTF 795 (985)
Q Consensus 723 ~i~~~~~~t~~Vvv~~p-n~~G~i~~---di~eI~~la~~~galliVD~a~~~~~~~-l~~pg~~--g~Di~~~s~hK~l 795 (985)
+++++.+++++|+++.. +.+|++.+ .+++|.++|+++|+++|+|+++. .-.+ +.....+ .+|+++ +.|++
T Consensus 226 ~l~~~~~~~aavi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~-~r~g~~~a~~~~gv~pDi~t--~sK~l 302 (465)
T 2yky_A 226 LLKRHGHDCAAILVEPMLGAGGCVPAERAFLDLLRAEASRCGALLIFDEVMT-SRLSGGGAQEMLGISADLTT--LGKYI 302 (465)
Confidence 99754457888887653 45787651 29999999999999999999985 2111 0001111 267764 45887
Q ss_pred cccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHHHHHHHHHH
Q 001989 796 CIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIA 875 (985)
Q Consensus 796 ~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl~~~~~~~ 875 (985)
+ ||..+|++++++++.+.+.....+. ....+++.++++.++++.+.|..+..+++ .++.
T Consensus 303 g-----~G~piG~v~~~~~i~~~l~~~~~g~-------------~~~~~T~~~npla~aAa~aaL~~l~~~~~---~~~~ 361 (465)
T 2yky_A 303 G-----GGMSFGAFGGRRDLMERFDPARDGA-------------FAHAGTFNNNILTMSAGHAALTQIYTRQA---ASDL 361 (465)
Confidence 4 3566889999988876654310000 00111233455556666677777755543 4566
Q ss_pred HHHHHHHHHHhhcc---CCee--ecCCCCceeeEEEEEecC--c---c---ccCCCCHHHHHHHHHHCCCccCCCCCCCC
Q 001989 876 ILNANYMAKRLEKH---YPIL--FRGVNGTVAHEFIVDLRG--L---K---NTAGIEPEDVAKRLMDYGFHGPTMSWPVP 942 (985)
Q Consensus 876 ~~~a~~l~~~L~~g---~~l~--~~~~~~~~~~~~iv~~~~--~---~---~~~g~~~~~v~~~L~~~Gi~~~~~~~p~~ 942 (985)
.++.++++++|++. +++. ..+ .+.. +.+.+.. . . .........+.+.|.++|+++....++
T Consensus 362 ~~~~~~l~~~L~~~~~~~~~~~~v~g-~G~~---~~i~~~~~~~~~~~~~~~~d~~~~~~~~~~ll~~GV~v~p~~~~-- 435 (465)
T 2yky_A 362 SASGDRFRANLNRIAVENQAPLQFTG-LGSL---GTIHFSRAPIRSAGDVRAADQQLKELFFFHMLRKGIYLAPRGMY-- 435 (465)
Confidence 77788888888752 2221 111 1211 1222210 0 0 000011457888899999988654432
Q ss_pred CEEEEeccCCCCHHHHHHHHccCChhHHHHhhcc
Q 001989 943 GTLMIEPTESESKSWTGIVMLSSPSEKKLHRLKM 976 (985)
Q Consensus 943 ~~lris~t~~~t~eeId~~~~~~~l~~~~~~~~~ 976 (985)
. ++..+|++|||+ ++++|+++++++++
T Consensus 436 -~----~s~~~t~edid~--~l~~l~~~l~~~~~ 462 (465)
T 2yky_A 436 -A----LSLEIADAGRDA--FAEALADFIGEQRA 462 (465)
Confidence 1 556799999999 88999998887654
|
| >1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence O substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=1e-14 Score=166.55 Aligned_cols=269 Identities=12% Similarity=0.088 Sum_probs=180.1
Q ss_pred HHHHHHHHhc----CC--CCcc-eeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeC
Q 001989 215 NFQTMIADLT----GL--PMSN-ASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSD 287 (985)
Q Consensus 215 e~q~~ia~L~----g~--~~~~-~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~ 287 (985)
++++.+|+++ |. ++.+ +.+++|+|.+++.++.++ . ++||+|++++..|+++...++. .|++++.++
T Consensus 67 ~l~~~la~~~~~~~g~~~~~~~~v~~~~g~~~a~~~~~~~~-~--~~gd~vl~~~~~~~~~~~~~~~----~g~~~~~v~ 139 (389)
T 1gd9_A 67 ELREAIAEKLKKQNGIEADPKTEIMVLLGANQAFLMGLSAF-L--KDGEEVLIPTPAFVSYAPAVIL----AGGKPVEVP 139 (389)
T ss_dssp HHHHHHHHHHHHHHCCCCCTTTSEEEESSTTHHHHHHHTTT-C--CTTCEEEEEESCCTTHHHHHHH----HTCEEEEEE
T ss_pred HHHHHHHHHHHHHhCCCCCCCCeEEEcCChHHHHHHHHHHh-C--CCCCEEEEcCCCchhHHHHHHH----CCCEEEEec
Confidence 3555666666 84 5667 889999998877766544 2 3789999999999998887753 467777664
Q ss_pred c----------hhhhc-cCCCEeEEEEEcC-CCCeeec---cHHHHHHHHHhCCcEEEEEecCccccCCC-----CCC--
Q 001989 288 L----------KDIDY-KSGDVCGVLVQYP-GTEGEVL---DYGDFIKNAHANGVKVVMATDLLALTILK-----PPG-- 345 (985)
Q Consensus 288 ~----------~~l~~-l~~~t~~V~v~~p-n~~G~v~---di~~I~~~a~~~galliV~a~~~~lg~l~-----~~~-- 345 (985)
. ++|++ +++++++|++.+| |.+|.+. ++++|+++|+++|+++++| +..+.+... +..
T Consensus 140 ~~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~D-e~~~~~~~~~~~~~~~~~~ 218 (389)
T 1gd9_A 140 TYEEDEFRLNVDELKKYVTDKTRALIINSPCNPTGAVLTKKDLEEIADFVVEHDLIVISD-EVYEHFIYDDARHYSIASL 218 (389)
T ss_dssp CCGGGTTCCCHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEE-CTTTTCBCTTCCCCCGGGS
T ss_pred cCCccCCCCCHHHHHHhcCcCceEEEEECCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEe-hhhhhcccCCCCCCCHhhc
Confidence 3 34555 7778999999888 6799886 6999999999999999995 333332221 111
Q ss_pred --cccceEEEecC-ccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccc
Q 001989 346 --ELGADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICT 422 (985)
Q Consensus 346 --~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t 422 (985)
..+.|++++|. |.|+.| |-.+|++++++++++.+.... ...+ .+.
T Consensus 219 ~~~~~~~i~~~s~sK~~~~~----G~r~G~~~~~~~~~~~l~~~~--------------------------~~~~--~~~ 266 (389)
T 1gd9_A 219 DGMFERTITVNGFSKTFAMT----GWRLGFVAAPSWIIERMVKFQ--------------------------MYNA--TCP 266 (389)
T ss_dssp TTCGGGEEEEEESTTTTTCG----GGCCEEEECCHHHHHHHHHHH--------------------------TTTT--CSC
T ss_pred cCCCCCEEEEecChhhcCCc----ccceEEEEECHHHHHHHHHHH--------------------------hhhc--cCC
Confidence 25789999998 766422 222699999888776541100 0001 111
Q ss_pred hh-HHHHHHHHHHHHHhCcc--hHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCCCcceEEEecC----CHHHHHHHHH-H
Q 001989 423 AQ-ALLANMAAMYAVYHGPE--GLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDTVKVKCA----DAHAIASAAY-K 494 (985)
Q Consensus 423 ~~-~l~a~~aa~~l~~~g~~--Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~~~~~~~~~~~----~~~~v~~~L~-~ 494 (985)
+. ...+..++ +. .+.+ +++++.++..++.+++.+.|+++| +++..+....-+.+..+ ++.++.+.|. +
T Consensus 267 ~~~~~~a~~~~--l~-~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 342 (389)
T 1gd9_A 267 VTFIQYAAAKA--LK-DERSWKAVEEMRKEYDRRRKLVWKRLNEMG-LPTVKPKGAFYIFPRIRDTGLTSKKFSELMLKE 342 (389)
T ss_dssp CHHHHHHHHHH--HT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CCCCCCCBTTEECCBCGGGTCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHH--Hh-CCCcchHHHHHHHHHHHHHHHHHHHHHHcC-CeecCCCeeeEEEEeccCCCCCHHHHHHHHHHh
Confidence 11 11122222 11 1233 678888999999999999999986 77653211111223443 2788999998 8
Q ss_pred cCceeeee------cCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 495 IEMNLRVV------DSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 495 ~GI~~~~~------~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
+||.+... .++.+|++++. ++++|+++++.|.+
T Consensus 343 ~gi~v~~g~~~~~~~~~~iRi~~~~--~~~~i~~~l~~l~~ 381 (389)
T 1gd9_A 343 ARVAVVPGSAFGKAGEGYVRISYAT--AYEKLEEAMDRMER 381 (389)
T ss_dssp TCEECEEGGGGCGGGTTBEEEECCS--CHHHHHHHHHHHHH
T ss_pred CCEEEeCchhhCCCCCCeEEEEecC--CHHHHHHHHHHHHH
Confidence 89987542 15789999985 89999999998874
|
| >3n0l_A Serine hydroxymethyltransferase; alpha beta class, 3-layer(ABA) sandwich, CSGI transferase, structural genomics; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.64 E-value=7.7e-15 Score=169.07 Aligned_cols=274 Identities=11% Similarity=0.045 Sum_probs=174.6
Q ss_pred HHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHh-hcCCCeEEEEeC-----
Q 001989 214 LNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITR-ADGFDIKVVVSD----- 287 (985)
Q Consensus 214 ~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~-a~~~gi~v~~v~----- 287 (985)
..+++.+++++|.+.+++.+ .+||.++++++.++ . ++||+|+++...|+++....... ..+.+++++.++
T Consensus 74 ~~~~~~la~~~g~~~~~i~~-~sGt~a~~~~~~~~-~--~~gd~vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 149 (417)
T 3n0l_A 74 TLAIERCKKLFNCKFANVQP-NSGSQANQGVYAAL-I--NPGDKILGMDLSHGGHLTHGAKVSSSGKMYESCFYGVELDG 149 (417)
T ss_dssp HHHHHHHHHHHTCSEEECCC-SSHHHHHHHHHHHH-S--CTTCEEEEECC----------------CCSEEEEECCCTTS
T ss_pred HHHHHHHHHHhCCCCcceEe-ccHHHHHHHHHHHh-c--CCCCEEEecccccccccchhhhhhhhcceeeeEeccCCCCC
Confidence 34667999999998876655 44577777766554 2 38999999999998776532211 123455555543
Q ss_pred ---chhhhc-cC-CCEeEEEEEcCCCCeeeccHHHHHHHHHhCCcEEEEEecCccccCC-----CCCCcccceEEEecC-
Q 001989 288 ---LKDIDY-KS-GDVCGVLVQYPGTEGEVLDYGDFIKNAHANGVKVVMATDLLALTIL-----KPPGELGADIVVGSA- 356 (985)
Q Consensus 288 ---~~~l~~-l~-~~t~~V~v~~pn~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l-----~~~~~~GaDi~v~s~- 356 (985)
+++|++ ++ +++++|++.+|| .|.+.|+++|.++|+++|+++++| +.++.|.. ..+.. ++||+++|.
T Consensus 150 ~~d~~~l~~~i~~~~~~~v~~~~~~-~G~~~~l~~i~~l~~~~~~~li~D-ea~~~g~~~~~~~~~~~~-~~di~~~s~s 226 (417)
T 3n0l_A 150 RIDYEKVREIAKKEKPKLIVCGASA-YARVIDFAKFREIADEIGAYLFAD-IAHIAGLVVAGEHPSPFP-YAHVVSSTTH 226 (417)
T ss_dssp SCCHHHHHHHHHHHCCSEEEECCSS-CCSCCCHHHHHHHHHHHTCEEEEE-CTTTHHHHHTTSSCCCTT-TCSEEEEESS
T ss_pred CcCHHHHHHHHHhcCCeEEEECCcc-cCccCCHHHHHHHHHHcCCEEEEE-CccchhhhhcccCCCccc-cceEEEeeCc
Confidence 355666 65 578999988888 499999999999999999999995 33333322 11111 589999998
Q ss_pred ccccccCCCCCCcEEEEEEc-hhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHH
Q 001989 357 QRFGVPMGYGGPHAAFLATS-QEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYA 435 (985)
Q Consensus 357 k~lg~P~~~GGP~~G~l~~~-~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l 435 (985)
|.|+ ||.+|+++++ +++.+.+... +..++..-..+....++.+++
T Consensus 227 K~l~------g~~~G~~~~~~~~~~~~~~~~--------------------------~~~~~~~~~~~~~~aa~~~a~-- 272 (417)
T 3n0l_A 227 KTLR------GPRGGIIMTNDEELAKKINSA--------------------------IFPGIQGGPLMHVIAAKAVGF-- 272 (417)
T ss_dssp TTTC------SCSCEEEEESCHHHHHHHHHH--------------------------HTTTTCSSCCHHHHHHHHHHH--
T ss_pred cccC------CCCeeEEEECCHHHHHHHhhh--------------------------hCCcccCCcHHHHHHHHHHHH--
Confidence 7664 3335899888 5666554100 000111111112333333332
Q ss_pred HHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCC-CCcceEEEecC--C--HHHHHHHHHHcCceeeee--------
Q 001989 436 VYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGL-PFFDTVKVKCA--D--AHAIASAAYKIEMNLRVV-------- 502 (985)
Q Consensus 436 ~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~-~~~~~~~~~~~--~--~~~v~~~L~~~GI~~~~~-------- 502 (985)
.....++++++.++..++++++.+.|++.| +++... ...+.+.+... + ..++.+.|.++||.++..
T Consensus 273 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~ 351 (417)
T 3n0l_A 273 KFNLSDEWKVYAKQVRTNAQVLANVLMDRK-FKLVSDGTDNHLVLMSFLDREFSGKDADLALGNAGITANKNTVPGEIRS 351 (417)
T ss_dssp HHHTSHHHHHHHHHHHHHHHHHHHHHHHTT-CEEGGGSCSSSEEEEECTTSSSCHHHHHHHHHHTTEECEECCCTTCCSC
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHhCC-ceeccCCCCceEEEEEcccCCCCHHHHHHHHHHcCeEEeccccCCCCcc
Confidence 344456788999999999999999999987 887642 22233444443 2 788889999999987532
Q ss_pred --cCCeEEEEeccC----CCHHHHHHHHHHHhC
Q 001989 503 --DSNTVTASFDET----TTLEDVDKLFIVFAG 529 (985)
Q Consensus 503 --~~~~lris~t~~----~t~edId~li~aL~~ 529 (985)
..+.+|+++... .|++||++++++|.+
T Consensus 352 ~~~~~~~ri~~~~~~~~~~~~~~i~~~~~~l~~ 384 (417)
T 3n0l_A 352 PFITSGLRLGTPALTARGFKEKEMEIVSNYIAD 384 (417)
T ss_dssp TTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHH
T ss_pred cCCCCeeEecCHHHhhCCCCHHHHHHHHHHHHH
Confidence 135699997654 568999999999874
|
| >3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha and beta protein; HET: LLP; 2.65A {Bacillus anthracis} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.64 E-value=1.1e-14 Score=166.80 Aligned_cols=276 Identities=13% Similarity=0.117 Sum_probs=180.3
Q ss_pred HHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhh----c---CCCCEEEEcCCCChhHHHHHHHhhcCC-----
Q 001989 212 SLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQ----K---GKKKTFIIASNCHPQTIDICITRADGF----- 279 (985)
Q Consensus 212 ~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~----~---~~g~~Vlv~~~~H~s~~~~~~~~a~~~----- 279 (985)
...++++.+++++|.+ .+.+++|||.++++++.+.... + .++++|+++...|+.....+.......
T Consensus 79 ~~~~l~~~la~~~g~~--~v~~~~~gt~a~~~al~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (392)
T 3ruy_A 79 QLGPWYEKVAKLTNKE--MVLPMNTGAEAVETAIKTARRWAYDVKKVEANRAEIIVCEDNFHGRTMGAVSMSSNEEYKRG 156 (392)
T ss_dssp THHHHHHHHHHHHTCS--EEEEESSHHHHHHHHHHHHHHHHHHTSCCCTTCCEEEEETTCCCCSSHHHHHTCSCTTTTTT
T ss_pred HHHHHHHHHHHhcCCC--EEEEeCcHHHHHHHHHHHHHHhhhhccCCCCCCcEEEEEcCCcCCCCHhhhhccCChhhccc
Confidence 3456778999999944 5888999998888776543211 0 146799998888865554443321110
Q ss_pred ----CeEEEEe---Cchhhhc-cCCCEeEEEEEcC-CCCeeecc----HHHHHHHHHhCCcEEEEEecCc-cccCCCC--
Q 001989 280 ----DIKVVVS---DLKDIDY-KSGDVCGVLVQYP-GTEGEVLD----YGDFIKNAHANGVKVVMATDLL-ALTILKP-- 343 (985)
Q Consensus 280 ----gi~v~~v---~~~~l~~-l~~~t~~V~v~~p-n~~G~v~d----i~~I~~~a~~~galliV~a~~~-~lg~l~~-- 343 (985)
...+..+ |+++|++ +++++++|++++| |++|.+.| +++|.++|+++|+++++|. .+ .++....
T Consensus 157 ~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~nptG~~~~~~~~l~~i~~l~~~~~~~li~De-~~~~~~~~g~~~ 235 (392)
T 3ruy_A 157 FGPMLPGIIVIPYGDLEALKAAITPNTAAFILEPIQGEAGINIPPAGFLKEALEVCKKENVLFVADE-IQTGLGRTGKVF 235 (392)
T ss_dssp CCSCCSSEEEECTTCHHHHHHHCCTTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHTTTCEEEEEC-TTTTTTTTSSSS
T ss_pred cCCCCCCCeeeCcccHHHHHHHhccCeEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEee-chhCCCccccch
Confidence 1123333 4567777 8889999999887 78999998 9999999999999999953 33 2332111
Q ss_pred -CC--cccceEEEecCccccccCCCCC-CcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCC
Q 001989 344 -PG--ELGADIVVGSAQRFGVPMGYGG-PHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSN 419 (985)
Q Consensus 344 -~~--~~GaDi~v~s~k~lg~P~~~GG-P~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsn 419 (985)
.. ..+.|+++.| |.++ || ..+|++++++++.+.+.....+ .|.+
T Consensus 236 ~~~~~~~~~d~~~~S-K~l~-----gG~~~~G~~~~~~~~~~~~~~~~~~--------------------------~~~~ 283 (392)
T 3ruy_A 236 ACDWDNVTPDMYILG-KALG-----GGVFPISCAAANRDILGVFEPGSHG--------------------------STFG 283 (392)
T ss_dssp GGGGGTCCCSEEEEC-GGGG-----TTTSCCEEEEECHHHHTTCCTTSSC--------------------------CSST
T ss_pred hhhccCCCCCEEEEc-hhhh-----CChhhhEEEEECHHHHhhhccCCcC--------------------------CCCC
Confidence 11 2346887664 7664 23 3478999999887766321100 0110
Q ss_pred ccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCC--CeEEcCCCCcceEEEecCC-HHHHHHHHHHcC
Q 001989 420 ICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLG--TVEVQGLPFFDTVKVKCAD-AHAIASAAYKIE 496 (985)
Q Consensus 420 i~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g--~~~~~~~~~~~~~~~~~~~-~~~v~~~L~~~G 496 (985)
.+.....+..+++ ..+.. +++.++..++.+++++.|++++ .+.... +...-+.+.+++ +.++.+.|.++|
T Consensus 284 -~~~~~~~a~~~~l--~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~-~~g~~~~~~~~~~~~~l~~~l~~~g 356 (392)
T 3ruy_A 284 -GNPLACAVSIAAL--EVLEE---EKLTERSLQLGEKLVGQLKEIDNPMITEVR-GKGLFIGIELNEPARPYCEQLKAAG 356 (392)
T ss_dssp -TCHHHHHHHHHHH--HHHHH---TTHHHHHHHHHHHHHHHHTTCCCTTEEEEE-EETTEEEEEESSCSHHHHHHHHTTT
T ss_pred -CCHHHHHHHHHHH--HHHHh---hhHHHHHHHHHHHHHHHHHHhcCCCceEEE-eeeeEEEEEEcchHHHHHHHHHHCC
Confidence 0111222222222 33221 5677888899999999999874 122221 111224444443 788999999999
Q ss_pred ceeeeecCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 497 MNLRVVDSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 497 I~~~~~~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
|.+....++.+|++++..+|++|+++++++|.+
T Consensus 357 i~v~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~ 389 (392)
T 3ruy_A 357 LLCKETHENVIRIAPPLVISEEDLEWAFQKIKA 389 (392)
T ss_dssp EECCCBTTTEEEECCCTTCCHHHHHHHHHHHHH
T ss_pred cEEecCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 998876678999999999999999999999863
|
| >3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: GLN PMP; 2.26A {Mus musculus} SCOP: c.67.1.0 PDB: 2zjg_A* 3e2f_A* 3e2z_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=3.2e-14 Score=163.66 Aligned_cols=270 Identities=10% Similarity=0.040 Sum_probs=177.8
Q ss_pred HHHHHHHhcC------CCC-cceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc
Q 001989 216 FQTMIADLTG------LPM-SNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL 288 (985)
Q Consensus 216 ~q~~ia~L~g------~~~-~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~ 288 (985)
+++.+|++++ .++ .++.+++|++.+++.++.++ . ++||+|+++...|+.+...++. .|.+++.++.
T Consensus 66 l~~~la~~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~~-~--~~gd~vl~~~p~~~~~~~~~~~----~g~~~~~~~~ 138 (410)
T 3e2y_A 66 LVKALSCLYGKIYQRQIDPNEEILVAVGAYGSLFNSIQGL-V--DPGDEVIIMVPFYDCYEPMVRM----AGAVPVFIPL 138 (410)
T ss_dssp HHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHHHHHHHHH-C--CTTCEEEEEESCCTTHHHHHHH----TTCEEEEEEC
T ss_pred HHHHHHHHHHHHhCCCCCCCCCEEEeCCcHHHHHHHHHHh-c--CCCCEEEEeCCCchhhHHHHHH----cCCEEEEEec
Confidence 4455555554 445 67889999998887776654 2 3889999999999998887653 4666665532
Q ss_pred -------------------hhhhc-cCCCEeEEEEEcC-CCCeee---ccHHHHHHHHHhCCcEEEEEecCccccCCC--
Q 001989 289 -------------------KDIDY-KSGDVCGVLVQYP-GTEGEV---LDYGDFIKNAHANGVKVVMATDLLALTILK-- 342 (985)
Q Consensus 289 -------------------~~l~~-l~~~t~~V~v~~p-n~~G~v---~di~~I~~~a~~~galliV~a~~~~lg~l~-- 342 (985)
+++++ +++++++|++++| |.+|.+ +++++|+++|+++|+++++|. ..+.....
T Consensus 139 ~~~~~~g~~~~~~~~~~d~~~l~~~~~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De-~~~~~~~~~~ 217 (410)
T 3e2y_A 139 RSKPTDGMKWTSSDWTFDPRELESKFSSKTKAIILNTPHNPLGKVYTRQELQVIADLCVKHDTLCISDE-VYEWLVYTGH 217 (410)
T ss_dssp EECCCCSSCCBGGGEECCHHHHHTTCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEC-TTTTCBCTTC
T ss_pred cccccccccccccCCcCCHHHHHhhcCCCceEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEEh-hhhhcccCCC
Confidence 45666 7788999999998 689998 689999999999999999953 33321110
Q ss_pred -------CCCcccceEEEecC-ccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeeccccccccccc
Q 001989 343 -------PPGELGADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRD 414 (985)
Q Consensus 343 -------~~~~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre 414 (985)
.+..++.++++.|. |.|+.| |..+|++++++++++.+.. . +.
T Consensus 218 ~~~~~~~~~~~~~~~i~~~S~sK~~g~~----G~r~G~~~~~~~~~~~~~~-------------------------~-~~ 267 (410)
T 3e2y_A 218 THVKIATLPGMWERTITIGSAGKTFSVT----GWKLGWSIGPAHLIKHLQT-------------------------V-QQ 267 (410)
T ss_dssp CCCCGGGSTTCGGGEEEEEEHHHHSSCG----GGCCEEEECCHHHHHHHHH-------------------------H-HH
T ss_pred CCCCHHHcCCccCeEEEEecchhhcCCC----CceEEEEEECHHHHHHHHH-------------------------H-HH
Confidence 11234567888887 888532 3457999998887765410 0 00
Q ss_pred ccCCCccchhHHHHHHHHHHHHH------hCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCCCcceEEEecCC----
Q 001989 415 KATSNICTAQALLANMAAMYAVY------HGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDTVKVKCAD---- 484 (985)
Q Consensus 415 ~atsni~t~~~l~a~~aa~~l~~------~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~---- 484 (985)
..+.+. +.....+..++ +.. ...+.++++.++..++.+++.+.|+++| +++..+....-+.++...
T Consensus 268 ~~~~~~-~~~~~~a~~~~--l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~~~~~~~~~~~~~~~ 343 (410)
T 3e2y_A 268 NSFYTC-ATPLQAALAEA--FWIDIKRMDDPECYFNSLPKELEVKRDRMVRLLNSVG-LKPIVPDGGYFIIADVSSLGAD 343 (410)
T ss_dssp TTTCCC-CHHHHHHHHHH--HHHHHTTTTSTTSHHHHHHHHHHHHHHHHHHHHHTTT-CEEEBCSBSSEEEEECGGGCCC
T ss_pred hhccCC-ChHHHHHHHHH--HHhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHCC-CeecCCCccEEEEEEchhhhcc
Confidence 011111 11222222222 221 2355688899999999999999999997 876532111112222211
Q ss_pred ----------HHHHHHHH-HHcCceeeee-----------cCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 485 ----------AHAIASAA-YKIEMNLRVV-----------DSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 485 ----------~~~v~~~L-~~~GI~~~~~-----------~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
..++.++| .++||.+..- ..+.+|+|++. |+++|+++++.|.+
T Consensus 344 ~~~~~~~~~~~~~~~~~ll~~~gv~v~~g~~f~~~~~~~~~~~~iRis~~~--~~e~l~~~l~~l~~ 408 (410)
T 3e2y_A 344 LSDMNSDEPYDYKFVKWMTKHKKLTAIPVSAFCDSKSKPHFEKLVRFCFIK--KDSTLDAAEEIFRA 408 (410)
T ss_dssp CTTCCSSCCHHHHHHHHHHHHHSEECEEGGGGSCTTTHHHHTTEEEEECCC--CHHHHHHHHHHHHT
T ss_pred cccccccccCHHHHHHHHHHHcCEEEeCchhhCCCCCCCCCCCEEEEEEcC--CHHHHHHHHHHHHh
Confidence 23677765 4679987431 13789999875 99999999999874
|
| >3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A, one-carbon metabolism, pyridoxa phosphate, structural genomics; 1.60A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=99.63 E-value=1.5e-14 Score=166.90 Aligned_cols=273 Identities=12% Similarity=0.093 Sum_probs=169.1
Q ss_pred HHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHH-HHHHHhhcCCCeEEEEeCc------
Q 001989 216 FQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTI-DICITRADGFDIKVVVSDL------ 288 (985)
Q Consensus 216 ~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~-~~~~~~a~~~gi~v~~v~~------ 288 (985)
.++.+++++|.+..++ ++.+||.++++++.++ . ++||+|+++...|++.. ........+.+++++.++.
T Consensus 83 a~~~~~~~~~~~~~~v-~~~~Gs~a~~~al~~~-~--~~gd~Vi~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 158 (425)
T 3ecd_A 83 AIERVKRLFNAGHANV-QPHSGAQANGAVMLAL-A--KPGDTVLGMSLDAGGHLTHGAKPALSGKWFNALQYGVSRDTML 158 (425)
T ss_dssp HHHHHHHHHTCSEEEC-CCSSHHHHHHHHHHHH-C--CTTCEEEEECC------------------CEEEEECCCTTTSS
T ss_pred HHHHHHHHhCCCCcee-ecCchHHHHHHHHHHc-c--CCCCEEEEcccccccceecchhhhhcccceeeeecCCCcccCc
Confidence 3478899999887433 5778887777766554 2 38999999999998833 2222111233445555432
Q ss_pred ---hhhhc-cC-CCEeEEEEEcCCCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCC---CCCcc-cceEEEecC-cc
Q 001989 289 ---KDIDY-KS-GDVCGVLVQYPGTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILK---PPGEL-GADIVVGSA-QR 358 (985)
Q Consensus 289 ---~~l~~-l~-~~t~~V~v~~pn~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~---~~~~~-GaDi~v~s~-k~ 358 (985)
++|++ +. +++++|++.+|++ |...|+++|.++|+++|+++++| +.++.|... .+..+ .+||+++|. |+
T Consensus 159 ~d~~~l~~~i~~~~~~~v~~~~~~~-~~~~~l~~i~~l~~~~~~~li~D-e~~~~g~~~~~~~~~~~~~~di~~~s~sK~ 236 (425)
T 3ecd_A 159 IDYDQVEALAQQHKPSLIIAGFSAY-PRKLDFARFRAIADSVGAKLMVD-MAHIAGVIAAGRHANPVEHAHVVTSTTHKT 236 (425)
T ss_dssp CCHHHHHHHHHHHCCSEEEEECSCC-CSCCCHHHHHHHHHHHTCEEEEE-CGGGHHHHHTTSSCCGGGTCSEEEEESSGG
T ss_pred cCHHHHHHHHhhcCCcEEEEccccC-CCcCCHHHHHHHHHHcCCEEEEE-CcChHhhhhcccccCchhcCcEEEecCCcc
Confidence 45555 54 5789999987765 88899999999999999999995 333333221 11111 379999998 77
Q ss_pred ccccCCCCCCcEEEEEEch-hhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHHHH
Q 001989 359 FGVPMGYGGPHAAFLATSQ-EYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVY 437 (985)
Q Consensus 359 lg~P~~~GGP~~G~l~~~~-~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~ 437 (985)
|+ ||.+|++++++ .+.+.+...... + ..++++ +....+..+++ ..
T Consensus 237 l~------g~~~g~~~~~~~~~~~~~~~~~~~------~-----------------~~~~~~---~~~~~a~~~a~--~~ 282 (425)
T 3ecd_A 237 LR------GPRGGFVLTNDEEIAKKINSAVFP------G-----------------LQGGPL---MHVIAGKAVAF--GE 282 (425)
T ss_dssp GC------CCSCEEEEESCHHHHHHHHHHHC----------------------------CCC---HHHHHHHHHHH--HH
T ss_pred cC------CCCcEEEEeCCHHHHHHHHhhhCc------c-----------------ccCCcc---HHHHHHHHHHH--HH
Confidence 64 34458888874 454443110000 0 001111 12233333332 33
Q ss_pred hCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCC-CCcceEEEecC--C--HHHHHHHHHHcCceeeee----------
Q 001989 438 HGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGL-PFFDTVKVKCA--D--AHAIASAAYKIEMNLRVV---------- 502 (985)
Q Consensus 438 ~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~-~~~~~~~~~~~--~--~~~v~~~L~~~GI~~~~~---------- 502 (985)
...++++++.++..++.+++++.|.+.| +++..+ .....+.+..+ + ...+.+.|.++||.+...
T Consensus 283 ~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~p~~~~~~~ 361 (425)
T 3ecd_A 283 ALTDDFKTYIDRVLANAQALGDVLKAGG-VDLVTGGTDNHLLLVDLRPKGLKGAQVEQALERAGITCNKNGIPFDPEKPT 361 (425)
T ss_dssp HTSHHHHHHHHHHHHHHHHHHHHHHHTT-CEEGGGSCSSSEEEEECGGGTCCHHHHHHHHHHTTEECEECCCTTCSSCTT
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHhCC-CeeccCCCCceEEEEEeCCCCCCHHHHHHHHHHcCCEecccccCCCCCCCC
Confidence 4456888999999999999999999987 888742 22334444443 2 778889999999987621
Q ss_pred cCCeEEEEecc----CCCHHHHHHHHHHHhC
Q 001989 503 DSNTVTASFDE----TTTLEDVDKLFIVFAG 529 (985)
Q Consensus 503 ~~~~lris~t~----~~t~edId~li~aL~~ 529 (985)
.++.+|+++.. ..+++||++++++|.+
T Consensus 362 ~~~~iRi~~~~~~~~~~~~e~i~~~~~~l~~ 392 (425)
T 3ecd_A 362 ITSGIRLGTPAGTTRGFGAAEFREVGRLILE 392 (425)
T ss_dssp TCSEEEEESHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CccceeccchhheeccCCHHHHHHHHHHHHH
Confidence 12579999554 4459999999999974
|
| >1ibj_A CBL, cystathionine beta-lyase; PLP-dependent enzyme, methionine biosynthesis, transsulfurat lyase; HET: PLP; 2.30A {Arabidopsis thaliana} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.63 E-value=5.5e-15 Score=173.29 Aligned_cols=161 Identities=19% Similarity=0.203 Sum_probs=124.9
Q ss_pred HHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc---h
Q 001989 213 LLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL---K 289 (985)
Q Consensus 213 i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~---~ 289 (985)
..++++.+++++|.+ ++.++.+|+.++.+++ ... ++||+||+++..|+++...+..+++..|++++.++. +
T Consensus 135 ~~~l~~~la~~~g~~--~~i~~~sGt~al~~~l---~~~-~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~v~~v~~~d~~ 208 (464)
T 1ibj_A 135 RDALESLLAKLDKAD--RAFCFTSGMAALSAVT---HLI-KNGEEIVAGDDVYGGSDRLLSQVVPRSGVVVKRVNTTKLD 208 (464)
T ss_dssp HHHHHHHHHHHHTCS--EEEEESSHHHHHHHHH---TTS-CTTCEEEEESSCCHHHHHHHHHTSGGGTCEEEEECTTSHH
T ss_pred HHHHHHHHHHHhCCC--eEEEECCHHHHHHHHH---HHh-CCCCEEEEECCCchhHHHHHHHHHHHcCCEEEEeCCCCHH
Confidence 456778999999986 4667788886655433 221 389999999999999998887667778999999876 4
Q ss_pred hhhc-cCCCEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCCCCCcccceEEEecC-ccccccCCCC
Q 001989 290 DIDY-KSGDVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKPPGELGADIVVGSA-QRFGVPMGYG 366 (985)
Q Consensus 290 ~l~~-l~~~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~~~~~~GaDi~v~s~-k~lg~P~~~G 366 (985)
++++ ++++|++|++.+| |.+|.+.|+++|+++||++|+++++| +.++.|....+.++|+||++.|. |+|++|.+
T Consensus 209 ~l~~~i~~~tk~v~l~~p~NptG~v~~l~~i~~la~~~gi~livD-ea~~~g~~~~~~~~~~div~~S~sK~~~g~~G-- 285 (464)
T 1ibj_A 209 EVAAAIGPQTKLVWLESPTNPRQQISDIRKISEMAHAQGALVLVD-NSIMSPVLSRPLELGADIVMHSATKFIAGHSD-- 285 (464)
T ss_dssp HHHHHCCSSEEEEEECSSCTTTCCCCCHHHHHHHHHTTTCEEEEE-CTTTCTTTCCGGGTTCSEEEEETTTTTTCSSC--
T ss_pred HHHHHhccCceEEEEeCCCCCCCEeecHHHHHHHHHHcCCEEEEE-CCCcccccCChhhcCCEEEEECCcccccCCCC--
Confidence 5666 7889999999998 77999999999999999999999994 45555555456678999999998 77765422
Q ss_pred CCcEEEEEEch-hhHhcC
Q 001989 367 GPHAAFLATSQ-EYKRMM 383 (985)
Q Consensus 367 GP~~G~l~~~~-~~~~~l 383 (985)
--+|++++++ ++.+.+
T Consensus 286 -l~~G~l~~~~~~l~~~l 302 (464)
T 1ibj_A 286 -VMAGVLAVKGEKLAKEV 302 (464)
T ss_dssp -CCCEEEEECSHHHHHHH
T ss_pred -CcEEEEEEChHHHHHHH
Confidence 1238898885 665554
|
| >1ajs_A Aspartate aminotransferase; PIG, in the presence of ligand 2-methylaspartate; HET: LLP PLA; 1.60A {Sus scrofa} SCOP: c.67.1.1 PDB: 1ajr_A* 3ii0_A* 1aat_A 2cst_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=2.7e-15 Score=172.95 Aligned_cols=291 Identities=10% Similarity=0.053 Sum_probs=179.0
Q ss_pred HHHHHHHHHHh-CC-----Ccc-cee--cCcHHHHHHHHHHHHHHHHHhcCCCCC-----CEEEEcCCCCcccHHHHHHC
Q 001989 635 NNLGEWLCTIT-GF-----DSF-SLQ--PNAGAAGEYAGLMVIRAYHKARGDHHR-----NVCIIPVSAHGTNPATAAMC 700 (985)
Q Consensus 635 ~e~~~~la~l~-G~-----~~~-~~~--~~sGa~a~~a~l~air~~~~~~g~~~~-----~~IIv~~~~Hg~~~~~a~~~ 700 (985)
.++++.+++++ +. +.. .++ .++|++|++.++..++.+ .++ ++|+++.+.|..+...++..
T Consensus 77 ~~lr~~la~~~~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~------~~g~~~~~d~Vl~~~p~y~~~~~~~~~~ 150 (412)
T 1ajs_A 77 AEFRTCASRLALGDDSPALQEKRVGGVQSLGGTGALRIGAEFLARW------YNGTNNKDTPVYVSSPTWENHNGVFTTA 150 (412)
T ss_dssp HHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHH------SSSSSCCCSCEEEEESCCTHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCCCCccCCCcEEEEECCCcHHHHHHHHHHHHHh------CcCcCCCCCeEEEcCCCcHHHHHHHHHc
Confidence 35667777776 43 222 344 566677775554322221 255 78999888777777778889
Q ss_pred CcE-EEEEcCC--CCCCCCHHHHHHHHHhcCCCEEEEEEEcCC-Cccccc--cCHHHHHHHHHHcCCEEEEEcccc-ccc
Q 001989 701 GMK-IVSVGTD--AKGNINIEELRKAAEANRDNLSTLMVTYPS-THGVYE--EGIDEICKIIHDNGGQVYMDGANM-NAQ 773 (985)
Q Consensus 701 G~~-vv~v~~d--~~g~iD~e~L~~~i~~~~~~t~~Vvv~~pn-~~G~i~--~di~eI~~la~~~galliVD~a~~-~~~ 773 (985)
|++ ++.+|.+ +++.+|+++|+++++++++++++|++++|+ ++|.+. .++++|+++|+++|+++++|+++. .+.
T Consensus 151 g~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~y~~~~~ 230 (412)
T 1ajs_A 151 GFKDIRSYRYWDTEKRGLDLQGFLSDLENAPEFSIFVLHACAHNPTGTDPTPEQWKQIASVMKRRFLFPFFDSAYQGFAS 230 (412)
T ss_dssp TCSCEEEEECEETTTTEECHHHHHHHHHHSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTTT
T ss_pred CCceeEEEeeecCCCCccCHHHHHHHHHhCCCCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEcccccccC
Confidence 999 9999984 457799999999998544578888889984 689884 257899999999999999999863 111
Q ss_pred cC----CCCCCcc--CCc--EEEeCCcccccccCCCCCCceEEEEE---ccc----ccCcCCCCccccCCCCCCCCCCCC
Q 001989 774 VG----LTSPGYI--GAD--VCHLNLHKTFCIPHGGGGPGMGPIGV---KKH----LAPFLPSHPVVSTGGIPAPEKSQP 838 (985)
Q Consensus 774 ~~----l~~pg~~--g~D--i~~~s~hK~l~~p~g~GGPg~G~i~~---~~~----l~~~lp~~~~g~~~~~~~~~~~~~ 838 (985)
.+ ......+ ..| +++.|++|+|+.+ |.++|++++ +++ +...+... .. ..
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~----G~riG~~~~~~~~~~~~~~~~~~~~~~-~~-----------~~ 294 (412)
T 1ajs_A 231 GNLEKDAWAIRYFVSEGFELFCAQSFSKNFGLY----NERVGNLTVVAKEPDSILRVLSQMQKI-VR-----------VT 294 (412)
T ss_dssp SCHHHHTHHHHHHHHTTCCEEEEEECTTTSCCG----GGCEEEEEEECSSHHHHHHHHHHHHHH-HH-----------TT
T ss_pred CcccccchHHHHHhccCCcEEEEEecccccCCC----CcceEEEEEecCCHHHHHHHHHHHHHH-Hh-----------cc
Confidence 11 0000001 123 7788999988532 456899998 655 32222110 00 00
Q ss_pred CCCCCCcchhhhHHHHHHHHHHHHhc-----HHHHHHHHHHHHHHHHHHHHHhhc-cC--CeeecCCCCceeeEEEEEec
Q 001989 839 LGTIAAAPWGSALILPISYTYIAMMG-----SKGLTEASKIAILNANYMAKRLEK-HY--PILFRGVNGTVAHEFIVDLR 910 (985)
Q Consensus 839 ~~~i~s~~~g~~~~~~~a~a~l~~lg-----~eGl~~~~~~~~~~a~~l~~~L~~-g~--~l~~~~~~~~~~~~~iv~~~ 910 (985)
+...+ . ....++.++|.... .+.+.+..++..++++++.+.|++ +. .+.+..+.+..+ +.+
T Consensus 295 ~~~~~--~----~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~--~~~--- 363 (412)
T 1ajs_A 295 WSNPP--A----QGARIVARTLSDPELFHEWTGNVKTMADRILSMRSELRARLEALKTPGTWNHITDQIGMF--SFT--- 363 (412)
T ss_dssp TSSCC--S----HHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCHHHHHCCSSE--EEC---
T ss_pred cCCCC--h----HHHHHHHHHHcCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCeeEEcCCCceE--EEe---
Confidence 11111 1 11222223333221 235566677788889999999986 31 121111112222 111
Q ss_pred CccccCCCCHHHHHHHHHHCCCccCCCCCCCCCEEEEeccCCCCHHHHHHHHccCChhHHHHhh
Q 001989 911 GLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRL 974 (985)
Q Consensus 911 ~~~~~~g~~~~~v~~~L~~~Gi~~~~~~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~ 974 (985)
+.+...+.+.|.++||.+.. .+||+++. .+++|+++ +++.|+++++++
T Consensus 364 ------~~~~~~~~~~l~~~gv~v~~-------~~Ris~~~-~~~~~i~~--~~~~l~~~l~~~ 411 (412)
T 1ajs_A 364 ------GLNPKQVEYLINQKHIYLLP-------SGRINMCG-LTTKNLDY--VATSIHEAVTKI 411 (412)
T ss_dssp ------CCCHHHHHHHHHTTCEECCT-------TSEEEGGG-CCTTTHHH--HHHHHHHHHHHC
T ss_pred ------CCCHHHHHHHHHhCCEEecC-------CcEEEeee-CCHHHHHH--HHHHHHHHHHhc
Confidence 23445555666788998742 36999884 58999999 888898888764
|
| >2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.63 E-value=1.9e-14 Score=165.77 Aligned_cols=269 Identities=12% Similarity=0.061 Sum_probs=180.7
Q ss_pred HHHHHHHHhc----CCC--C-cceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeC
Q 001989 215 NFQTMIADLT----GLP--M-SNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSD 287 (985)
Q Consensus 215 e~q~~ia~L~----g~~--~-~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~ 287 (985)
++++.+|+++ |.+ + .++.+++|+|.++++++.++. ++||+|+++...|+.+...++. .|.+++.++
T Consensus 89 ~lr~~ia~~~~~~~g~~~~~~~~v~~t~G~~~al~~~~~~l~---~~gd~Vl~~~p~y~~~~~~~~~----~g~~~~~v~ 161 (404)
T 2o1b_A 89 AFKQAIVDFYQRQYNVTLDKEDEVCILYGTKNGLVAVPTCVI---NPGDYVLLPDPGYTDYLAGVLL----ADGKPVPLN 161 (404)
T ss_dssp HHHHHHHHHHHHHHCCCCCTTTSEEEESSHHHHHHHHHHHHC---CTTCEEEEEESCCSSHHHHHHH----TTCEEEEEE
T ss_pred HHHHHHHHHHHHHhCCCCCCcccEEEcCCcHHHHHHHHHHhc---CCCCEEEEcCCCchhHHHHHHH----CCCEEEEec
Confidence 4556666666 875 2 578899999988887776652 3789999999999998887753 477777765
Q ss_pred c---------hhhhc-cCCCEeEEEEEcC-CCCeeec---cHHHHHHHHHhCCcEEEEEecCccccCC----CCCC----
Q 001989 288 L---------KDIDY-KSGDVCGVLVQYP-GTEGEVL---DYGDFIKNAHANGVKVVMATDLLALTIL----KPPG---- 345 (985)
Q Consensus 288 ~---------~~l~~-l~~~t~~V~v~~p-n~~G~v~---di~~I~~~a~~~galliV~a~~~~lg~l----~~~~---- 345 (985)
. ++|++ +++++++|++++| |.+|.+. ++++|+++|+++|+++++| +..+.... .+..
T Consensus 162 ~~~~~~~~d~~~l~~~l~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~D-e~~~~~~~~g~~~~~~~~~~ 240 (404)
T 2o1b_A 162 LEPPHYLPDWSKVDSQIIDKTKLIYLTYPNNPTGSTATKEVFDEAIAKFKGTDTKIVHD-FAYGAFGFDAKNPSILASEN 240 (404)
T ss_dssp CCTTTCCCCGGGSCHHHHHHEEEEEECSSCTTTCCCCCHHHHHHHHHHHTTSSCEEEEE-CTTTTCBSSSCCCCGGGSTT
T ss_pred cCcccCcCCHHHHHHhhccCceEEEEcCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEE-ccchhcccCCCCCChhhcCC
Confidence 3 33444 5567899999888 6799987 4789999999999999995 33332211 1111
Q ss_pred cccceEEEecC-ccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchh
Q 001989 346 ELGADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQ 424 (985)
Q Consensus 346 ~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~ 424 (985)
..+.|++++|. |.|+.| |..+|++++++++++.+.... . ....+.|. .
T Consensus 241 ~~~~~i~~~s~sK~~g~~----G~r~G~~~~~~~~~~~l~~~~----------~--------------~~~~~~~~---~ 289 (404)
T 2o1b_A 241 GKDVAIEIYSLSKGYNMS----GFRVGFAVGNKDMIQALKKYQ----------T--------------HTNAGMFG---A 289 (404)
T ss_dssp HHHHEEEEEESTTTTTCG----GGCCEEEEECHHHHHHHHHHH----------H--------------HHCCCCCH---H
T ss_pred CCCCEEEEEecchhccCc----hhheEeEecCHHHHHHHHHHH----------h--------------hccCCCCH---H
Confidence 23678999997 877532 234689999888776551100 0 00011111 1
Q ss_pred HHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCCCcce-EEEecCC---HHHHHHHHH-HcCcee
Q 001989 425 ALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDT-VKVKCAD---AHAIASAAY-KIEMNL 499 (985)
Q Consensus 425 ~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~~~~~-~~~~~~~---~~~v~~~L~-~~GI~~ 499 (985)
...+..++ +.. +.+.++++.++..++.+++.+.|+++| +++.... .+- +.+..+. ..++.++|. ++||.+
T Consensus 290 ~~~a~~~~--l~~-~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~-~g~~~~~~~~~~~~~~~l~~~l~~~~gi~v 364 (404)
T 2o1b_A 290 LQDAAIYA--LNH-YDDFLEEQSNVFKTRRDRFEAMLAKAD-LPFVHAK-GGIYVWLETPPGYDSEQFEQFLVQEKSILV 364 (404)
T ss_dssp HHHHHHHH--HHH-CHHHHHHHHHHHHHHHHHHHHHHHHTT-CCEECCC-BSSEEEEECCTTCCHHHHHHHHHHHHCEEC
T ss_pred HHHHHHHH--Hhc-CHHHHHHHHHHHHHHHHHHHHHHHhcC-CeecCCC-cceEEEEeCCCCCCHHHHHHHHHHHCCEEE
Confidence 12222222 232 356688888899999999999999886 7765321 111 3345542 678888887 579987
Q ss_pred eee------cCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 500 RVV------DSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 500 ~~~------~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
... .++.+|++++. ++++|+++++.|.+
T Consensus 365 ~~g~~f~~~~~~~iRis~~~--~~e~l~~~l~~l~~ 398 (404)
T 2o1b_A 365 APGKPFGENGNRYVRISLAL--DDQKLDEAAIRLTE 398 (404)
T ss_dssp EESGGGCGGGTTEEEEECCS--CTTHHHHHHHHHHG
T ss_pred eCchhhCcCCCCeEEEEEcC--CHHHHHHHHHHHHH
Confidence 542 14789999986 78899999999874
|
| >2c81_A Glutamine-2-deoxy-scyllo-inosose aminotransferase; SMAT, butirosin, aminoglycoside antibiotics; HET: PMP; 1.7A {Bacillus circulans} PDB: 2c7t_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=2e-14 Score=166.14 Aligned_cols=292 Identities=14% Similarity=0.086 Sum_probs=187.7
Q ss_pred hHHHHHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeC
Q 001989 208 GRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSD 287 (985)
Q Consensus 208 g~l~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~ 287 (985)
|..+...++++.+++++|.+ ...++.+||.+++.++.+++. ++||+|+++...|+++...++. .|++++.++
T Consensus 39 g~~~l~~~l~~~la~~~g~~--~~i~~~~gt~al~~~~~~~~~--~~gd~Vl~~~~~~~~~~~~~~~----~g~~~~~~~ 110 (418)
T 2c81_A 39 GEESMERKFAKAFADFNGVP--YCVPTTSGSTALMLALEALGI--GEGDEVIVPSLTWIATATAVLN----VNALPVFVD 110 (418)
T ss_dssp SSCCHHHHHHHHHHHHHTCS--EEEEESCHHHHHHHHHHHTTC--CTTCEEEEESSSCTHHHHHHHH----TTCEEEEEC
T ss_pred CCHHHHHHHHHHHHHHhCCC--cEEEeCCHHHHHHHHHHHcCC--CCcCEEEECCCccHhHHHHHHH----cCCEEEEEe
Confidence 33445667889999999987 366778888777776666533 3789999999999999988753 588888776
Q ss_pred c---------hhhhc-cCCCEeEEEEEcCCCCeeeccHHHHHHHHHhCCcEEEEEecCccccC-CC--CCCcccceEEEe
Q 001989 288 L---------KDIDY-KSGDVCGVLVQYPGTEGEVLDYGDFIKNAHANGVKVVMATDLLALTI-LK--PPGELGADIVVG 354 (985)
Q Consensus 288 ~---------~~l~~-l~~~t~~V~v~~pn~~G~v~di~~I~~~a~~~galliV~a~~~~lg~-l~--~~~~~GaDi~v~ 354 (985)
. ++|++ +++++++|++++ ++|.+.|+++|.++|+++|+++++| +..+.+. .. ..+.++ |+++.
T Consensus 111 ~~~~~~~~d~~~l~~~i~~~~~~v~~~~--~~G~~~~~~~i~~~~~~~~~~li~D-~a~~~~~~~~~~~~~~~~-~~~~~ 186 (418)
T 2c81_A 111 VEADTYCIDPQLIKSAITDKTKAIIPVH--LFGSMANMDEINEIAQEHNLFVIED-CAQSHGSVWNNQRAGTIG-DIGAF 186 (418)
T ss_dssp BCTTTCSBCHHHHGGGCCTTEEEECCBC--CTTCCCCHHHHHHHHHHTTCEEEEE-CTTCTTCEETTEETTSSS-SEEEE
T ss_pred cCCCCCCcCHHHHHHhhCCCCeEEEEeC--CcCCcccHHHHHHHHHHCCCEEEEE-CcccccCccCCEeccccc-ceEEE
Confidence 4 34555 778899998765 5799999999999999999999995 3444443 21 123333 55555
Q ss_pred c--C-ccccccCCCCCCcEEEEEEc-hhhHhcCCCce-eeeeecCCCCcceeeeccccccccccc--ccCCCccc-hhHH
Q 001989 355 S--A-QRFGVPMGYGGPHAAFLATS-QEYKRMMPGRI-VGVSIDSSGKPALRVAMQTREQHIRRD--KATSNICT-AQAL 426 (985)
Q Consensus 355 s--~-k~lg~P~~~GGP~~G~l~~~-~~~~~~lp~~~-vG~t~d~~g~~~~~l~l~tre~~irre--~atsni~t-~~~l 426 (985)
+ + |.|+. | .+|++.++ +++.+++.... .|.... +.+ .....+.+ .+|.++.. +..+
T Consensus 187 s~s~~K~~~~-----g-~~g~~~~~~~~l~~~~~~~~~~~~~~~--~~~--------~~~~~~~~~~~~~~~~~g~~~~~ 250 (418)
T 2c81_A 187 SCQQGKVLTA-----G-EGGIIVTKNPRLFELIQQLRADSRVYC--DDS--------SELMHGDMQLVKKGDIQGSNYCL 250 (418)
T ss_dssp ECCTTSSSCS-----S-SCEEEEESCHHHHHHHHHHHBTTEEEC--SCG--------GGCCTTCBSEEECCSSCCCBCCC
T ss_pred eccCCcccCC-----C-CeEEEEECCHHHHHHHHHHHHhCcccc--ccc--------cccccchhhccccccccCcCCCc
Confidence 4 3 66642 2 35788884 66655442111 111000 000 00000001 11112211 0011
Q ss_pred HHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCC------CcceEEEecC-----C--HHHHHHHHH
Q 001989 427 LANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLP------FFDTVKVKCA-----D--AHAIASAAY 493 (985)
Q Consensus 427 ~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~------~~~~~~~~~~-----~--~~~v~~~L~ 493 (985)
..+.+++... ..++++++.++..++++++.+.|+++.++++...+ .+..+.+.++ + ..++.+.|.
T Consensus 251 ~~~~aa~~~~--~l~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~ 328 (418)
T 2c81_A 251 SEFQSAILLD--QLQELDDKNAIREKNAMFLNDALSKIDGIKVMKRPPQVSRQTYYGYVFRFDPVKFGGLNADQFCEILR 328 (418)
T ss_dssp CHHHHHHHHH--HHTTHHHHHHHHHHHHHHHHHHHTTSTTEEECCCCTTEEECCCSEEEEEECGGGTTTCCHHHHHHHHH
T ss_pred CHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhccCCCcccCCCCCCCcccccEEEEEEEccccccccCHHHHHHHHH
Confidence 1222333212 23467888899999999999999998339887322 1234445554 2 789999999
Q ss_pred Hc-Cce---eeeec----------------------------------------CCeEEEEeccCC-CHHHHHHHHHHHh
Q 001989 494 KI-EMN---LRVVD----------------------------------------SNTVTASFDETT-TLEDVDKLFIVFA 528 (985)
Q Consensus 494 ~~-GI~---~~~~~----------------------------------------~~~lris~t~~~-t~edId~li~aL~ 528 (985)
++ ||. ++... .+.+|++++..+ |+||||+++++|.
T Consensus 329 ~~~gI~~~~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~gt~edi~~~~~~l~ 408 (418)
T 2c81_A 329 EKLNMGTFYLHPPYLPVHKNPLFCPWTKNRYLKSVRKTEAYWRGLHYPVSERASGQSIVIHHAILLAEPSHLSLLVDAVA 408 (418)
T ss_dssp HHHTCCTTTEECCCCCGGGCTTCCGGGCTTSCHHHHCCHHHHHTCCCHHHHHHHHHEEEEEGGGGGSCHHHHHHHHHHHH
T ss_pred HcCCCCcccccccccccccCchhcccccccccccccccccccccCCChHHHHHHhCEEEecCCccCCCHHHHHHHHHHHH
Confidence 98 998 64310 147999999999 9999999999997
Q ss_pred C
Q 001989 529 G 529 (985)
Q Consensus 529 ~ 529 (985)
+
T Consensus 409 ~ 409 (418)
T 2c81_A 409 E 409 (418)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, , structural genomics, PSI-2, protein structure initiative; 2.50A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=99.63 E-value=1.7e-13 Score=154.16 Aligned_cols=296 Identities=14% Similarity=0.136 Sum_probs=191.2
Q ss_pred CCCCCCCCcHHHHHHHHhCCccccccCCChhhHhhhHHHHHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhc
Q 001989 173 MGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQK 252 (985)
Q Consensus 173 ~g~y~~~~p~~v~~~i~~~~~~~t~~~pyq~e~sqg~l~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~ 252 (985)
.|..+...|+.+.+++...-.-+..|.+. ++ .++++.+|+++|.++.++.+++|+|.+++.++.++.
T Consensus 22 ~~~~~~~~~~~v~~a~~~~~~~~~~y~~~-----~~-----~~lr~~la~~~~~~~~~i~~t~g~~~al~~~~~~l~--- 88 (350)
T 3fkd_A 22 TTVWTDGDKDHLEKHLVENLNCIRHYPEP-----DA-----GTLRQMLAKRNSVDNNAILVTNGPTAAFYQIAQAFR--- 88 (350)
T ss_dssp CCSCCCSCCHHHHHHHHHTGGGGGSCCCT-----TC-----HHHHHHHHHHTTCCGGGEEEESHHHHHHHHHHHHTT---
T ss_pred CCCCCCCCCHHHHHHHHHhHhHHhcCCCC-----cH-----HHHHHHHHHHhCcCHHHEEEcCCHHHHHHHHHHHHC---
Confidence 44434446666665555432222333221 11 257899999999998899999999988777666542
Q ss_pred CCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc-hhhhccC-CCEeEEEEEcC-CCCeeeccHHHHHHHHHhCC-cE
Q 001989 253 GKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL-KDIDYKS-GDVCGVLVQYP-GTEGEVLDYGDFIKNAHANG-VK 328 (985)
Q Consensus 253 ~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~-~~l~~l~-~~t~~V~v~~p-n~~G~v~di~~I~~~a~~~g-al 328 (985)
||+|+++...|+++...++. .|++++.++. ++-..++ +++++|++.+| |.+|.+.|+++|.++++.++ .+
T Consensus 89 --gd~Vi~~~p~~~~~~~~~~~----~g~~~~~v~~~~~~~~~~~~~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~ 162 (350)
T 3fkd_A 89 --GSRSLIAIPSFAEYEDACRM----YEHEVCFYPSNEDIGEADFSNMDFCWLCNPNNPDGRLLQRTEILRLLNDHPDTT 162 (350)
T ss_dssp --TCEEEEEESCCHHHHHHHHH----TTCEEEEEETTSCGGGSCCTTCSEEEEESSCTTTCCCCCHHHHHHHHHHCTTSE
T ss_pred --CCEEEEeCCCcHHHHHHHHH----cCCeEEEEecCCccccCccCCCCEEEEeCCCCCcCCCCCHHHHHHHHHhCCCCE
Confidence 79999999999998877653 5889998887 4433322 67899999998 78999999999999999886 66
Q ss_pred EEEEecCccccCCC-C-----CCcccceEEEecC-ccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCccee
Q 001989 329 VVMATDLLALTILK-P-----PGELGADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALR 401 (985)
Q Consensus 329 liV~a~~~~lg~l~-~-----~~~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~ 401 (985)
+++| +..+..... . ...++.+++++|. |.++.| |..+|++++++++.+.+... .
T Consensus 163 li~D-ea~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~~~----G~r~G~~~~~~~~~~~~~~~----------~---- 223 (350)
T 3fkd_A 163 FVLD-QSYVSFTTEEVIRPADIKGRKNLVMVYSFSHAYGIP----GLRIGYIVANKDFMKRVAAF----------S---- 223 (350)
T ss_dssp EEEE-CTTTTSCSSCCCCGGGGTTCSSEEEEEESHHHHSCG----GGCCEEEECCHHHHHHHHTT----------C----
T ss_pred EEEE-CchhhhccCcchhhHHhhcCCCEEEEecCchhccCc----chheEeEEeCHHHHHHHHHh----------C----
Confidence 7664 333321111 1 1245667999997 888643 23468999888877665110 0
Q ss_pred eecccccccccccccCCCccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCCCcceEEEe
Q 001989 402 VAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDTVKVK 481 (985)
Q Consensus 402 l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~~~~~~~~~ 481 (985)
...+.| .....+..+ .+... .+-.+.+.+. .++.+++.+.|++++++++... ...-+.+.
T Consensus 224 ------------~~~~~~---~~~~~~~~~--~l~~~-~~~~~~~~~~-~~~~~~l~~~L~~~~~~~~~~~-~~~~~~~~ 283 (350)
T 3fkd_A 224 ------------TPWAVN---ALAIEAAKF--ILIHP-AQFTLPIRKW-QRNTVDFITALNRLDGVEVHPS-GTTFFLLR 283 (350)
T ss_dssp ------------CTTCSC---HHHHHHHHH--HHHCT-TTTCCCHHHH-HHHHHHHHHHHHHSTTEEECCC-SSSEEEEE
T ss_pred ------------CCCCCC---HHHHHHHHH--HHhCH-HHHHHHHHHH-HHHHHHHHHHHhcCCCcEECCC-CCcEEEEE
Confidence 000111 111111111 12221 1012233333 3888999999998833887632 12223355
Q ss_pred cC--CHHHHHHHHHH-cCceeeee------cCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 482 CA--DAHAIASAAYK-IEMNLRVV------DSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 482 ~~--~~~~v~~~L~~-~GI~~~~~------~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
++ ++.++.+.|.+ +||.+... .++.+|+|++ +.+|+|+|+++|..
T Consensus 284 ~~~~~~~~l~~~L~~~~gi~v~~g~~f~~~~~~~iRis~~---~~~~~~~l~~al~~ 337 (350)
T 3fkd_A 284 LKKGTAAELKKYMLEEYNMLIRDASNFRGLDESYVRITTQ---RPAQNQLFIKALET 337 (350)
T ss_dssp ESSSCHHHHHHHHHHTTCEECEECTTSTTCCTTEEEEECC---CHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHCCEEEEeCccCCCCCCCEEEEEcC---CHHHHHHHHHHHHH
Confidence 55 38899999998 89987642 1578999976 88999999998874
|
| >3nmy_A Xometc, cystathionine gamma-lyase-like protein; Cys-Met metabolism PLP-dependent enzyme family, CYST gamma lyase, pyridoxal-phosphate; HET: PLP; 2.07A {Xanthomonas oryzae PV} SCOP: c.67.1.0 PDB: 3e6g_A* 3nnp_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=1.1e-14 Score=167.71 Aligned_cols=209 Identities=16% Similarity=0.101 Sum_probs=143.2
Q ss_pred HHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHH-----HHHCCcEEEEEc
Q 001989 634 FNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPAT-----AAMCGMKIVSVG 708 (985)
Q Consensus 634 ~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~-----a~~~G~~vv~v~ 708 (985)
..++++.+++++|.+. .+.++||++|+.+ +++ . ..++++||+++..|+..... ....|++++.++
T Consensus 69 ~~~l~~~la~l~g~~~-~~~~~sG~~Ai~~-~~~---l-----~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~ 138 (400)
T 3nmy_A 69 RFAYERCVAALEGGTR-AFAFASGMAATST-VME---L-----LDAGSHVVAMDDLYGGTFRLFERVRRRTAGLDFSFVD 138 (400)
T ss_dssp HHHHHHHHHHHHTCSE-EEEESSHHHHHHH-HHT---T-----SCTTCEEEEESSCCHHHHHHHHHTHHHHHCCEEEEEC
T ss_pred HHHHHHHHHHHhCCCC-EEEecCHHHHHHH-HHH---H-----cCCCCEEEEeCCCchHHHHHHHHhhHhhcCeEEEEEC
Confidence 5578899999999874 4667788877654 221 1 14678999988877633332 233699999999
Q ss_pred CCCCCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCccCCcEE
Q 001989 709 TDAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIGADVC 787 (985)
Q Consensus 709 ~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~g~Di~ 787 (985)
.+ |+++|+++++ +++++|++++| |++|.+. |+++|+++|+++|+++++|+++..+ .+..|..+|+|++
T Consensus 139 ~~-----d~~~l~~~i~---~~~~~v~~e~~~np~G~~~-~l~~i~~la~~~g~~livDe~~~~~--~~~~~~~~g~div 207 (400)
T 3nmy_A 139 LT-----DPAAFKAAIR---ADTKMVWIETPTNPMLKLV-DIAAIAVIARKHGLLTVVDNTFASP--MLQRPLSLGADLV 207 (400)
T ss_dssp TT-----SHHHHHHHCC---TTEEEEEEESSCTTTCCCC-CHHHHHHHHHHTTCEEEEECTTTHH--HHCCGGGGTCSEE
T ss_pred CC-----CHHHHHHHhc---cCCCEEEEECCCCCCCeee-cHHHHHHHHHHcCCEEEEECCCccc--ccCChhhcCCcEE
Confidence 75 8999999997 79999999998 4799998 8999999999999999999998522 2345677899999
Q ss_pred EeCCcccccccCCCCCCceE-EEEE-cccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcH
Q 001989 788 HLNLHKTFCIPHGGGGPGMG-PIGV-KKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGS 865 (985)
Q Consensus 788 ~~s~hK~l~~p~g~GGPg~G-~i~~-~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~ 865 (985)
+.|++|+|+.| |.+-+| ++++ ++++.+.+.... ...+... .+ ..+|..++. .
T Consensus 208 ~~S~sK~l~g~---g~~~gG~~vv~~~~~~~~~l~~~~-------------~~~g~~~-----~~---~~a~~~l~~--l 261 (400)
T 3nmy_A 208 VHSATKYLNGH---SDMVGGIAVVGDNAELAEQMAFLQ-------------NSIGGVQ-----GP---FDSFLALRG--L 261 (400)
T ss_dssp EEETTTTTTCS---SSCCCEEEEECSCHHHHHHHHHHH-------------HHHCCBC-----CH---HHHHHHHHH--H
T ss_pred EecCccccCCC---CCcceeEEEEeCCHHHHHHHHHHH-------------HhcCCCC-----CH---HHHHHHHHh--H
Confidence 99999998532 112345 3444 344443332100 0011111 11 123333333 3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcc
Q 001989 866 KGLTEASKIAILNANYMAKRLEKH 889 (985)
Q Consensus 866 eGl~~~~~~~~~~a~~l~~~L~~g 889 (985)
+.+..+.++..+++.++.+.|++.
T Consensus 262 ~~l~~r~~~~~~~a~~l~~~L~~~ 285 (400)
T 3nmy_A 262 KTLPLRMRAHCENALALAQWLETH 285 (400)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHcC
Confidence 445666778889999999999864
|
| >3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=99.63 E-value=1.1e-13 Score=158.42 Aligned_cols=322 Identities=16% Similarity=0.167 Sum_probs=200.4
Q ss_pred HHHHHHHHHHhcCCCccceecCCCCCCCCCcHHHHHHHHhCC-ccccccCCChhhHhhhHHHHHHHHHHHHHHhc----C
Q 001989 151 SQMIEHMQKLASMNKVYKSFIGMGYYNTHVPPVILRNIMENP-AWYTQYTPYQAEIAQGRLESLLNFQTMIADLT----G 225 (985)
Q Consensus 151 ~e~~~~~~~l~~~n~~~~~~lG~g~y~~~~p~~v~~~i~~~~-~~~t~~~pyq~e~sqg~l~~i~e~q~~ia~L~----g 225 (985)
.++.+..+++...+..+.+| +.|..+...|+.+.+++...- .....|.+. +| ..++++.+|+++ |
T Consensus 17 ~~~~~~~~~~~~~g~~~i~l-~~g~~~~~~~~~v~~a~~~~~~~~~~~y~~~-----~g----~~~lr~~ia~~~~~~~g 86 (391)
T 3h14_A 17 MDVMEAARRAEEAGRRIIHM-EVGQPGTGAPRGAVEALAKSLETDALGYTVA-----LG----LPALRQRIARLYGEWYG 86 (391)
T ss_dssp HHHHHHHHHHHHTTCCCEEC-CCSSCSSCSCHHHHHHHHHHHC---------------C----CHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcCCCeEEc-cCCCCCCCCCHHHHHHHHHHHhcCCCCCCCC-----CC----hHHHHHHHHHHHHHHhC
Confidence 44556666666666554443 344444445776654544310 011233321 12 234555666665 4
Q ss_pred --CCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCch-------hhhccCC
Q 001989 226 --LPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDLK-------DIDYKSG 296 (985)
Q Consensus 226 --~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~~-------~l~~l~~ 296 (985)
.++.++.+++|+|.+++.++.++. ++||+|+++...|+++...++. .|++++.++.+ +++.+..
T Consensus 87 ~~~~~~~v~~t~g~~~al~~~~~~l~---~~gd~vl~~~p~~~~~~~~~~~----~g~~~~~v~~~~~~~~~~d~~~l~~ 159 (391)
T 3h14_A 87 VDLDPGRVVITPGSSGGFLLAFTALF---DSGDRVGIGAPGYPSYRQILRA----LGLVPVDLPTAPENRLQPVPADFAG 159 (391)
T ss_dssp CCCCGGGEEEESSHHHHHHHHHHHHC---CTTCEEEEEESCCHHHHHHHHH----TTCEEEEEECCGGGTTSCCHHHHTT
T ss_pred CCCCHHHEEEecChHHHHHHHHHHhc---CCCCEEEEcCCCCccHHHHHHH----cCCEEEEeecCcccCCCCCHHHHHh
Confidence 567789999999988887766542 3889999999999999887753 58888887653 2333222
Q ss_pred -CEeEEEEEcC-CCCeeecc---HHHHHHHHHhCCcEEEEEecCccccCC----CCCCcc-cceEEEecC-ccccccCCC
Q 001989 297 -DVCGVLVQYP-GTEGEVLD---YGDFIKNAHANGVKVVMATDLLALTIL----KPPGEL-GADIVVGSA-QRFGVPMGY 365 (985)
Q Consensus 297 -~t~~V~v~~p-n~~G~v~d---i~~I~~~a~~~galliV~a~~~~lg~l----~~~~~~-GaDi~v~s~-k~lg~P~~~ 365 (985)
++++|++.+| |.+|.+.| +++|+++|+++|+++++|. ..+.... ....++ +.+++++|. |.++.
T Consensus 160 ~~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De-~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~---- 234 (391)
T 3h14_A 160 LDLAGLMVASPANPTGTMLDHAAMGALIEAAQAQGASFISDE-IYHGIEYEAKAVTALELTDECYVINSFSKYFSM---- 234 (391)
T ss_dssp SCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEC-TTTTCBSSSCCCCGGGTCSSSEEEEESSSTTCC----
T ss_pred cCCeEEEECCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEEC-cchhcccCCCCcChhhcCCCEEEEEechhccCC----
Confidence 7899999998 78999876 8999999999999999953 3332111 111222 456888887 87753
Q ss_pred CCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchh-HHHHHHHHHHHHHhCcchHH
Q 001989 366 GGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQ-ALLANMAAMYAVYHGPEGLK 444 (985)
Q Consensus 366 GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~-~l~a~~aa~~l~~~g~~Gl~ 444 (985)
+|..+|++.+++++.+.+.. .++ ..+ .+++. ...+..+ .+...+.++
T Consensus 235 ~G~r~G~~~~~~~~~~~~~~-------------------------~~~-~~~--~~~~~~~~~a~~~----~l~~~~~~~ 282 (391)
T 3h14_A 235 TGWRVGWMVVPEDQVRVVER-------------------------IAQ-NMF--ICAPHASQVAALA----ALDCDAELQ 282 (391)
T ss_dssp TTSCCEEEECCGGGHHHHHH-------------------------HHH-HTT--CCCCHHHHHHHHH----HTTCHHHHH
T ss_pred ccceeEEEEeCHHHHHHHHH-------------------------HHh-hhc--cCCCHHHHHHHHH----HhCChHHHH
Confidence 34557999988877655410 000 001 11111 1112212 222566788
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCeEEcCCCCcc-eEEEecC--C--HHHHHHHHHHc-Cceeeee-------cCCeEEEEe
Q 001989 445 TIAQRVHGLAGTFALGLKKLGTVEVQGLPFFD-TVKVKCA--D--AHAIASAAYKI-EMNLRVV-------DSNTVTASF 511 (985)
Q Consensus 445 ~i~~~~~~~a~~l~~~L~~~g~~~~~~~~~~~-~~~~~~~--~--~~~v~~~L~~~-GI~~~~~-------~~~~lris~ 511 (985)
++.++..++.+++.+.|+++| +.....+... -+.+.++ + +.++.+.|.++ ||.+... .++.+|+++
T Consensus 283 ~~~~~~~~~~~~l~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~iRis~ 361 (391)
T 3h14_A 283 ANLDVYKANRKLMLERLPKAG-FTRIAPPDGAFYVYADVSDLTDDSRAFAAEILEKAGVAVTPGLDFDPERGAGTLRFSY 361 (391)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT-CCCBCCCCBTTEEEEECTTTCSCHHHHHHHHHHHHCEECEEGGGTCTTTGGGEEEEEC
T ss_pred HHHHHHHHHHHHHHHHHHHcC-CCcccCCCeeEEEEEecCccCCCHHHHHHHHHHHCCEEEcCchhhCCCCCCCeEEEEe
Confidence 999999999999999999886 5443222111 2333433 2 78899998775 9988542 146899999
Q ss_pred ccCCCHHHHHHHHHHHhC
Q 001989 512 DETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 512 t~~~t~edId~li~aL~~ 529 (985)
+. +++||+++++.|.+
T Consensus 362 ~~--~~~~i~~~l~~l~~ 377 (391)
T 3h14_A 362 AR--ATADIEEGLDRLEA 377 (391)
T ss_dssp CS--CHHHHHHHHHHHHH
T ss_pred cC--CHHHHHHHHHHHHH
Confidence 87 78999999998874
|
| >2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.63 E-value=9.8e-14 Score=160.00 Aligned_cols=270 Identities=11% Similarity=0.097 Sum_probs=182.1
Q ss_pred HHHHHHHHHhc----CC--CC-cceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEe
Q 001989 214 LNFQTMIADLT----GL--PM-SNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVS 286 (985)
Q Consensus 214 ~e~q~~ia~L~----g~--~~-~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v 286 (985)
.++++.+|+++ |. ++ .++.+++|+|.++++++.++ . ++||+|+++...|+.+...++. .|.+++.+
T Consensus 78 ~~l~~~ia~~~~~~~g~~~~~~~~v~~t~g~~~a~~~~~~~~-~--~~gd~Vl~~~p~~~~~~~~~~~----~g~~~~~~ 150 (412)
T 2x5d_A 78 PRLRRAISHWYRDRYDVQIDPESEAIVTIGSKEGLAHLMLAT-L--DHGDTILVPNPSYPIHIYGAVI----AGAQVRSV 150 (412)
T ss_dssp HHHHHHHHHHHHHHHCCCCCTTTSEEEESCHHHHHHHHHHHH-C--CTTCEEEEEESCCHHHHHHHHH----HTCEEEEE
T ss_pred HHHHHHHHHHHHHHhCCCCCCCcCEEEcCChHHHHHHHHHHh-C--CCCCEEEEcCCCchhHHHHHHH----cCCEEEEe
Confidence 35667777777 85 44 57999999998888777654 2 3789999999999999888754 47777766
Q ss_pred Cc----------hhhhc-cCCCEeEEEEEcC-CCCeeecc---HHHHHHHHHhCCcEEEEEecCccccCC-C----CCC-
Q 001989 287 DL----------KDIDY-KSGDVCGVLVQYP-GTEGEVLD---YGDFIKNAHANGVKVVMATDLLALTIL-K----PPG- 345 (985)
Q Consensus 287 ~~----------~~l~~-l~~~t~~V~v~~p-n~~G~v~d---i~~I~~~a~~~galliV~a~~~~lg~l-~----~~~- 345 (985)
+. +++++ +++++++|++.+| |.+|.+.+ +++|+++|+++|+++++| +..+.+.. . +..
T Consensus 151 ~~~~~~~~~~d~~~l~~~i~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~D-e~~~~~~~~g~~~~~~~~ 229 (412)
T 2x5d_A 151 PLVPGIDFFNELERAIRESIPKPRMMILGFPSNPTAQCVELDFFERVVALAKQYDVMVVHD-LAYADIVYDGWKAPSIMQ 229 (412)
T ss_dssp ECSTTSCHHHHHHHHHHTEESCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEE-CTTTTCBCTTCCCCCGGG
T ss_pred ecCCccCCCCCHHHHHHhcccCceEEEECCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEe-ccccccccCCCCCCChhh
Confidence 53 23444 6678999999888 67998864 789999999999999995 33333221 1 111
Q ss_pred ---cccceEEEecC-ccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCcc
Q 001989 346 ---ELGADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNIC 421 (985)
Q Consensus 346 ---~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~ 421 (985)
..+.|++++|. |.|+. +|..+|++++++++++.+.... + ....+.|.
T Consensus 230 ~~~~~~~~i~~~s~sK~~~~----~G~r~G~~~~~~~~~~~l~~~~----------------------~--~~~~~~~~- 280 (412)
T 2x5d_A 230 VPGAKDIAVEFFTLSKSYNM----AGWRIGFMVGNPELVSALARIK----------------------S--YHDYGTFT- 280 (412)
T ss_dssp STTGGGTEEEEEECC-CCSC----TTSCCEEEEECHHHHHHHHHHH----------------------H--HHCCCCCH-
T ss_pred ccCccCcEEEEecCccccCC----cccceEEEEcCHHHHHHHHHHH----------------------h--hhccCCCH-
Confidence 25789999997 77753 2344799999988776551100 0 00011111
Q ss_pred chhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCCCcc-eEEEecC------CHHHHHHHHHH
Q 001989 422 TAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFFD-TVKVKCA------DAHAIASAAYK 494 (985)
Q Consensus 422 t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~~~~-~~~~~~~------~~~~v~~~L~~ 494 (985)
....+..++ +. .+.+.++++.++..++.+++.+.|+++| +++..+. .. -+.+.++ +..++.+.|.+
T Consensus 281 --~~~~a~~~~--l~-~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~l~~ 353 (412)
T 2x5d_A 281 --PLQVAAIAA--LE-GDQQCVRDIARQYQQRRDVLVKGLREAG-WMVENPK-ASMYVWAKIPEPYAHLGSLEFAKKLLQ 353 (412)
T ss_dssp --HHHHHHHHH--HH-SCSHHHHHHHHHHHHHHHHHHHHHHHHT-CCCCCCS-BSSEEEEECCTTTGGGCHHHHHHHHHH
T ss_pred --HHHHHHHHH--Hh-CCHHHHHHHHHHHHHHHHHHHHHHHHCC-CEecCCC-eeeEEEEEcCCccCCCCHHHHHHHHHH
Confidence 111121121 22 3355688899999999999999999886 7765321 11 1334543 36788888865
Q ss_pred -cCceeeee------cCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 495 -IEMNLRVV------DSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 495 -~GI~~~~~------~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
+||.+... ..+.+|++++. ++++|+++++.|..
T Consensus 354 ~~gi~v~~g~~f~~~~~~~iRis~~~--~~~~l~~~l~~l~~ 393 (412)
T 2x5d_A 354 DAKVSVSPGIGFGDYGDDHVRFALIE--NRDRLRQAVRGIKA 393 (412)
T ss_dssp HHCEECEEGGGGCGGGTTEEEEECCS--CHHHHHHHHHHHHH
T ss_pred HCCEEEeCchhhCCCCCCeEEEEecC--CHHHHHHHHHHHHH
Confidence 69987542 14789999986 89999999998874
|
| >2ay1_A Aroat, aromatic amino acid aminotransferase; HET: PLP AHC; 2.20A {Paracoccus denitrificans} SCOP: c.67.1.1 PDB: 1ay5_A* 1ay4_A* 1ay8_A* 2ay2_A* 2ay3_A* 2ay4_A* 2ay5_A* 2ay6_A* 2ay7_A* 2ay8_A* 2ay9_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=6.9e-16 Score=176.70 Aligned_cols=288 Identities=11% Similarity=0.030 Sum_probs=175.9
Q ss_pred HHHHHHHHHh-CC--Cccc-ee--cCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcC
Q 001989 636 NLGEWLCTIT-GF--DSFS-LQ--PNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGT 709 (985)
Q Consensus 636 e~~~~la~l~-G~--~~~~-~~--~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~ 709 (985)
++++.+++++ +. +... ++ .++|++|++.++.+++.+ .++++|+++.+.|..+...++..|.+++.+|.
T Consensus 73 ~lr~~la~~~~~~~~~~~~v~~~~~~g~~~a~~~~~~~~~~~------~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~ 146 (394)
T 2ay1_A 73 EFQKAMGELILGDGLKSETTATLATVGGTGALRQALELARMA------NPDLRVFVSDPTWPNHVSIMNFMGLPVQTYRY 146 (394)
T ss_dssp HHHHHHHHHHHGGGCCGGGEEEEEEEHHHHHHHHHHHHHHHH------CTTCCEEEEESCCHHHHHHHHHHTCCEEEEEC
T ss_pred HHHHHHHHHHhCCCCCcccEEEEecCCchhHHHHHHHHHHhc------CCCCEEEEcCCCChhHHHHHHHcCCceEEEec
Confidence 5666677665 44 3433 33 667777776665555432 25688999887776666667788999999998
Q ss_pred C--CCCCCCHHHHHHHHHhcCCCEEEEEEEcCC-Ccccccc--CHHHHHHHHHHcCCEEEEEcccccc-ccC------CC
Q 001989 710 D--AKGNINIEELRKAAEANRDNLSTLMVTYPS-THGVYEE--GIDEICKIIHDNGGQVYMDGANMNA-QVG------LT 777 (985)
Q Consensus 710 d--~~g~iD~e~L~~~i~~~~~~t~~Vvv~~pn-~~G~i~~--di~eI~~la~~~galliVD~a~~~~-~~~------l~ 777 (985)
+ +++.+|+++|++++++.+++++++++++|+ ++|.+.+ ++++|.++|+++|+++++|+++... .++ +.
T Consensus 147 ~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~ 226 (394)
T 2ay1_A 147 FDAETRGVDFEGMKADLAAAKKGDMVLLHGCCHNPTGANLTLDQWAEIASILEKTGALPLIDLAYQGFGDGLEEDAAGTR 226 (394)
T ss_dssp EETTTTEECHHHHHHHHHTCCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEECCTTSSSCHHHHHHHHH
T ss_pred ccccCCccCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecCccccccCcccchHHHH
Confidence 5 457799999999998433357778888884 6898851 4778999999999999999998421 110 00
Q ss_pred CCCccCCc-EEEeCCcccccccCCCCCCceEEEEE---cccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHH
Q 001989 778 SPGYIGAD-VCHLNLHKTFCIPHGGGGPGMGPIGV---KKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALIL 853 (985)
Q Consensus 778 ~pg~~g~D-i~~~s~hK~l~~p~g~GGPg~G~i~~---~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~ 853 (985)
.....+.| +++.|++|+|+. +|.++|++++ ++++.+.+....... ....+... +. ...
T Consensus 227 ~~~~~~~~~i~~~s~sK~~~~----~G~riG~~~~~~~~~~~~~~l~~~~~~~--------~~~~~~~~--~~----~~~ 288 (394)
T 2ay1_A 227 LIASRIPEVLIAASCSKNFGI----YRERTGCLLALCADAATRELAQGAMAFL--------NRQTYSFP--PF----HGA 288 (394)
T ss_dssp HHHHHCSSEEEEEECTTTTTC----GGGCEEEEEEECSSHHHHHHHHHHHHHH--------HHTTTSSC--CC----HHH
T ss_pred HHhhcCCCEEEEEeccCCCcC----cCCccceEEEEeCCHHHHHHHHHHHHHH--------HhhhcCCC--Ch----HHH
Confidence 00112334 567788999854 3567899987 444322110000000 00001111 11 112
Q ss_pred HHHHHHHHHh-----cHHHHHHHHHHHHHHHHHHHHHhhc-c----CCeeecCCCCceeeEEEEEecCccccCCCCHHHH
Q 001989 854 PISYTYIAMM-----GSKGLTEASKIAILNANYMAKRLEK-H----YPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDV 923 (985)
Q Consensus 854 ~~a~a~l~~l-----g~eGl~~~~~~~~~~a~~l~~~L~~-g----~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v 923 (985)
.++.++|... -.+.+++..++..++++++.+.|++ + +.+. .+.+..+ +.+. .+.+.+
T Consensus 289 ~a~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~--~~~~g~~--~~~~---------~~~~~~ 355 (394)
T 2ay1_A 289 KIVSTVLTTPELRADWMAELEAVRSGMLRLREQLAGELRDLSGSDRFGFV--AEHRGMF--SRLG---------ATPEQV 355 (394)
T ss_dssp HHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTTHH--HHCCSSE--EECC---------CCHHHH
T ss_pred HHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCeeEE--cCCceEE--EeeC---------CCHHHH
Confidence 2222333321 0235666667778888999998876 3 3332 1112222 2222 234667
Q ss_pred HHHHHHCCCccCCCCCCCCCEEEEeccCCCCHHHHHHHHccCChhHH
Q 001989 924 AKRLMDYGFHGPTMSWPVPGTLMIEPTESESKSWTGIVMLSSPSEKK 970 (985)
Q Consensus 924 ~~~L~~~Gi~~~~~~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~ 970 (985)
.+.|.++||.+.. .+||+++ .++++||++ +++.|+++
T Consensus 356 ~~~l~~~gi~v~~-------~~Ris~~-~~~~~~i~~--~~~~l~~~ 392 (394)
T 2ay1_A 356 KRIKEEFGIYMVG-------DSRINIA-GLNDNTIPI--LARAIIEV 392 (394)
T ss_dssp HHHHHHHCEECCT-------TCEEEGG-GCCTTTHHH--HHHHHHHH
T ss_pred HHHHHhCCEEecC-------CCeEEee-cCCHhhHHH--HHHHHHHc
Confidence 7778888998742 3699988 579999999 66776654
|
| >3fsl_A Aromatic-amino-acid aminotransferase; tyrosine aminotransferase, pyridoxal phosphate, internal ALD schiff base, amino-acid biosynthesis; HET: PLR; 2.35A {Escherichia coli k-12} SCOP: c.67.1.1 PDB: 3tat_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=2.5e-15 Score=172.04 Aligned_cols=274 Identities=11% Similarity=0.093 Sum_probs=164.8
Q ss_pred eecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcC--CCCCCCCHHHHHHHHHhcCC
Q 001989 652 LQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGT--DAKGNINIEELRKAAEANRD 729 (985)
Q Consensus 652 ~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~--d~~g~iD~e~L~~~i~~~~~ 729 (985)
++.++|++++..++..+... .++++|+++.+.|..+...++..|++++.+|+ ++++.+|+++|+++++++++
T Consensus 99 ~~t~g~~~a~~~~~~~~~~~------~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~ 172 (397)
T 3fsl_A 99 IQTLGGSGALKVGADFLKRY------FPESGVWVSDPTWENHVAIFAGAGFEVSTYPWYDEATNGVRFNDLLATLKTLQA 172 (397)
T ss_dssp EEESHHHHHHHHHHHHHHHH------CTTCCEEEESSCCHHHHHHHHHTTCCEEEECCEETTTTEECHHHHHHHHTTCCT
T ss_pred EEcCCcHHHHHHHHHHHHhc------CCCCeEEEeCCCchhHHHHHHHcCCceEEEeeeeccCCcCcHHHHHHHHHhCCC
Confidence 45566666664443222111 36788999988777777778889999999998 45688999999999986556
Q ss_pred CEEEEEEEcC-CCccccc--cCHHHHHHHHHHcCCEEEEEccccccccCCCC--------CCccCCcEEEeCCccccccc
Q 001989 730 NLSTLMVTYP-STHGVYE--EGIDEICKIIHDNGGQVYMDGANMNAQVGLTS--------PGYIGADVCHLNLHKTFCIP 798 (985)
Q Consensus 730 ~t~~Vvv~~p-n~~G~i~--~di~eI~~la~~~galliVD~a~~~~~~~l~~--------pg~~g~Di~~~s~hK~l~~p 798 (985)
+++++++++| |++|.+. .++++|+++|+++|+++++|+++.....+... ++..+.++++.|++|+|+.|
T Consensus 173 ~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~ 252 (397)
T 3fsl_A 173 GSIVLLHPCCHNPTGADLTNDQWDAVIEILKARELIPFLDIAYQGFGAGMEEDAYAIRAIASAGLPALVSNSFSKIFSLY 252 (397)
T ss_dssp TCEEEECSSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTSSSCTTGGGHHHHHHHHTTCCEEEEEECTTTTTCG
T ss_pred CCEEEEeCCCCCCCCcCCCHHHHHHHHHHHHhCCEEEEEecCchhhccCcccccHHHHHHHhcCCCEEEEecccccccCc
Confidence 7888998888 5799884 15779999999999999999987421110000 01223457788889998543
Q ss_pred CCCCCCceEEEEEc---ccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHH-----hcHHHHHH
Q 001989 799 HGGGGPGMGPIGVK---KHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAM-----MGSKGLTE 870 (985)
Q Consensus 799 ~g~GGPg~G~i~~~---~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~-----lg~eGl~~ 870 (985)
|.++|++++. +++...+....... ....+.+.+. .++. ++..++.. ...+.+.+
T Consensus 253 ----G~riG~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~--~~~~----~~~~~l~~~~l~~~~~~~~~~ 314 (397)
T 3fsl_A 253 ----GERVGGLSVMCEDAEAAGRVLGQLKAT--------VRRNYSSPPN--FGAQ----VVAAVLNDEALKASWLKEVEE 314 (397)
T ss_dssp ----GGCCEEEEEECSSHHHHHHHHHHHHHH--------HHTTTSSCCS--HHHH----HHHHHHTSHHHHHHHHHHHHH
T ss_pred ----CCCeeEEEEecCCHHHHHHHHHHHHHH--------HHhccCCCCH--HHHH----HHHHHhcCHHHHHHHHHHHHH
Confidence 6678998752 22222110000000 0001111111 1111 11111211 01344566
Q ss_pred HHHHHHHHHHHHHHHhhccC---CeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCCCCCCCEEEE
Q 001989 871 ASKIAILNANYMAKRLEKHY---PILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMI 947 (985)
Q Consensus 871 ~~~~~~~~a~~l~~~L~~g~---~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~~p~~~~lri 947 (985)
..++..++++++.+.|++.. .+.+..+.+..+ +.+ +.+.+.+.+.|.++||.+... + ||
T Consensus 315 ~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~--~~~---------~~~~~~~~~~l~~~gi~v~~g-----~--Ri 376 (397)
T 3fsl_A 315 MRTRILAMRQELVKVLSTEMPERNFDYLLNQRGMF--SYT---------GLSAAQVDRLREEFGVYLIAS-----G--RM 376 (397)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTSCCTHHHHCCSSE--EEC---------CCCHHHHHHHHHTTCEECCTT-----C--EE
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCceeecCCceEE--Eec---------CCCHHHHHHHHHhCCEEECCC-----C--eE
Confidence 66777888999999998631 221111112222 112 235667778888899988421 2 88
Q ss_pred eccCCCCHHHHHHHHccCChhHH
Q 001989 948 EPTESESKSWTGIVMLSSPSEKK 970 (985)
Q Consensus 948 s~t~~~t~eeId~~~~~~~l~~~ 970 (985)
++.. .+.+||++ +++.|+++
T Consensus 377 s~~~-~~~~~i~~--~~~~l~~~ 396 (397)
T 3fsl_A 377 CVAG-LNTANVQR--VAKAFAAV 396 (397)
T ss_dssp EGGG-CCTTTHHH--HHHHHHHH
T ss_pred EEEe-cCHhhHHH--HHHHHHhh
Confidence 8864 35577999 66666654
|
| >3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=99.62 E-value=3.4e-14 Score=164.50 Aligned_cols=313 Identities=13% Similarity=0.084 Sum_probs=199.9
Q ss_pred ccceecCCCCCCCCCcHHHHHHHHhCCc-cccccCCChhhHhhhHHHHHHHHHHHHHHhcC--CCCcceeeccchHHHHH
Q 001989 166 VYKSFIGMGYYNTHVPPVILRNIMENPA-WYTQYTPYQAEIAQGRLESLLNFQTMIADLTG--LPMSNASLLDEGTAAAE 242 (985)
Q Consensus 166 ~~~~~lG~g~y~~~~p~~v~~~i~~~~~-~~t~~~pyq~e~sqg~l~~i~e~q~~ia~L~g--~~~~~~sl~~~~ta~~e 242 (985)
.+.+| +.|.-+...|+.+.+++.+.-+ ....|+++.. +...++.+++++.+| .++.++.+++|++.+++
T Consensus 62 ~~i~~-~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~~~~-------~l~~~l~~~l~~~~g~~~~~~~v~~~~g~~ea~~ 133 (421)
T 3l8a_A 62 ELLQM-WVADMDFLPVPEIKEAIINYGREHIFGYNYFND-------DLYQAVIDWERKEHDYAVVKEDILFIDGVVPAIS 133 (421)
T ss_dssp TCEEC-CSSCCCSCCCHHHHHHHHHHHHHCCSSCBCCCH-------HHHHHHHHHHHHHHCCCCCGGGEEEESCHHHHHH
T ss_pred Ceeec-ccCCCCCCCCHHHHHHHHHHHhcCCcCCCCCCH-------HHHHHHHHHHHHHhCCCCCHHHEEEcCCHHHHHH
Confidence 34343 3443344466666545443211 1234444432 333455677888888 56778989999998888
Q ss_pred HHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc-----------hhhhc-cC-CCEeEEEEEcC-CC
Q 001989 243 AMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL-----------KDIDY-KS-GDVCGVLVQYP-GT 308 (985)
Q Consensus 243 a~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~-----------~~l~~-l~-~~t~~V~v~~p-n~ 308 (985)
+++.++. ++||+|+++...|+.+...++. .|.+++.++. ++|++ +. +++++|++.+| |.
T Consensus 134 ~a~~~~~---~~gd~Vi~~~~~y~~~~~~~~~----~g~~~~~~~~~~~~~~~~~d~~~le~~i~~~~~~~vil~~p~np 206 (421)
T 3l8a_A 134 IALQAFS---EKGDAVLINSPVYYPFARTIRL----NDHRLVENSLQIINGRFEIDFEQLEKDIIDNNVKIYLLCSPHNP 206 (421)
T ss_dssp HHHHHHS---CTEEEEEEEESCCHHHHHHHHH----TTEEEEEEECEEETTEEECCHHHHHHHHHHTTEEEEEEESSBTT
T ss_pred HHHHHhc---CCCCEEEECCCCcHHHHHHHHH----CCCEEEeccccccCCCeeeCHHHHHHHhhccCCeEEEECCCCCC
Confidence 7776542 3789999999999998887754 4777766543 45666 65 78999999998 78
Q ss_pred Ceee---ccHHHHHHHHHhCCcEEEEEecCccccCC-----C-----CCCcccceEEEecC-ccccccCCCCCCcEEEEE
Q 001989 309 EGEV---LDYGDFIKNAHANGVKVVMATDLLALTIL-----K-----PPGELGADIVVGSA-QRFGVPMGYGGPHAAFLA 374 (985)
Q Consensus 309 ~G~v---~di~~I~~~a~~~galliV~a~~~~lg~l-----~-----~~~~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~ 374 (985)
+|.+ +++++|+++|+++|+++++|. .++.... . .+...+.++++.+. |.|+.| |-.+|++.
T Consensus 207 tG~~~~~~~l~~l~~l~~~~~~~li~De-~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~----G~~~G~~~ 281 (421)
T 3l8a_A 207 GGRVWDNDDLIKIAELCKKHGVILVSDE-IHQDLALFGNTHHSLNTLDASYKDFTIILSSATKTFNIA----GTKNSFAI 281 (421)
T ss_dssp TTBCCCHHHHHHHHHHHHHHTCEEEEEC-TTTTCBCTTCCCCCGGGSCTTGGGTEEEEECSHHHHTCG----GGCCEEEE
T ss_pred CCCcCCHHHHHHHHHHHHHcCCEEEEEc-cccccccCCCCCccHHHcCchhcCcEEEEEeChhhccCc----hhheEeEE
Confidence 9998 789999999999999999953 3221110 0 11224666888887 888532 33468888
Q ss_pred Ec-hhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHH
Q 001989 375 TS-QEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGL 453 (985)
Q Consensus 375 ~~-~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~ 453 (985)
++ +++.+.+.... ++ ....+.|. .+..+..+++ . .+.+.++++.++..++
T Consensus 282 ~~~~~l~~~~~~~~---------------------~~--~~~~~~n~---~~~~a~~aal--~-~~~~~~~~~~~~~~~~ 332 (421)
T 3l8a_A 282 IQNESLRRKFQYRQ---------------------LA--NNQHEVPT---VGMIATQAAF--Q-YGKPWLEELKTVIEGN 332 (421)
T ss_dssp CCSHHHHHHHHHHH---------------------HH--TTCSCCCH---HHHHHHHHHH--H-HCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHH---------------------Hh--cccCCCCH---HHHHHHHHHH--h-ccHHHHHHHHHHHHHH
Confidence 87 67665541100 00 00011221 1222222222 2 3556688899999999
Q ss_pred HHHHHHHHhcCCCeEEcCCCCcceEEEecC----CHHHHHHHHHH-cCceeeee------cCCeEEEEeccCCCHHHHHH
Q 001989 454 AGTFALGLKKLGTVEVQGLPFFDTVKVKCA----DAHAIASAAYK-IEMNLRVV------DSNTVTASFDETTTLEDVDK 522 (985)
Q Consensus 454 a~~l~~~L~~~g~~~~~~~~~~~~~~~~~~----~~~~v~~~L~~-~GI~~~~~------~~~~lris~t~~~t~edId~ 522 (985)
.+++++.|+++.++++..+...-.+.+.++ ...++.+.|.+ +||.+..- ..+.+|+++. +++++|++
T Consensus 333 ~~~l~~~L~~~~~i~~~~~~~~~~~~v~~~~~~~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~--~~~~~i~~ 410 (421)
T 3l8a_A 333 IKLVIKELEAKTKIKVMEPEGTYLVWLDFSAYAIAQPQLSEKLQNEAKVVLNDGAHFGKEGKYFARLNVA--TPKNTVQE 410 (421)
T ss_dssp HHHHHHHHHHHCSCEEECCSBSSEEEEECGGGTCCTTHHHHHHHHTTCEECEEGGGGCGGGTTEEEEECC--SCHHHHHH
T ss_pred HHHHHHHHHhCCCceEeCCCeeEEEEEeccccCCCHHHHHHHHHHhCCEEEECchhhCCCCCCEEEEEec--CCHHHHHH
Confidence 999999998862377764211111213332 26788889975 59987541 2588999988 68999999
Q ss_pred HHHHHhC
Q 001989 523 LFIVFAG 529 (985)
Q Consensus 523 li~aL~~ 529 (985)
+++.|.+
T Consensus 411 ~l~~l~~ 417 (421)
T 3l8a_A 411 ALSRIIS 417 (421)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998874
|
| >1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN acid, antiepileptic drug target; HET: PLP; 2.3A {Sus scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=2.1e-14 Score=168.95 Aligned_cols=293 Identities=16% Similarity=0.131 Sum_probs=177.7
Q ss_pred HHHHHHHHHHHhCCCc-cceecCcHHHHHHHHHHHHHHHHHh--cCC------------------CCCCEEEEc-CCCCc
Q 001989 634 FNNLGEWLCTITGFDS-FSLQPNAGAAGEYAGLMVIRAYHKA--RGD------------------HHRNVCIIP-VSAHG 691 (985)
Q Consensus 634 ~~e~~~~la~l~G~~~-~~~~~~sGa~a~~a~l~air~~~~~--~g~------------------~~~~~IIv~-~~~Hg 691 (985)
.+++.+.++++++.+. ..++++||++|+++++++++.|... +|. .++++||+. ..+||
T Consensus 112 ~~~la~~l~~~~~~~~~~v~f~~sGseA~~~Aik~a~~~~~~~~~~~~~~t~~~~~~~~~~~~~g~~r~~ii~~~~~yHg 191 (472)
T 1ohv_A 112 VEKLRESLLSVAPKGMSQLITMACGSCSNENAFKTIFMWYRSKERGQSAFSKEELETCMINQAPGCPDYSILSFMGAFHG 191 (472)
T ss_dssp HHHHHHTGGGGCCTTCCEEEEESSHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHTTCTTTSCCCEEEEETTCCCC
T ss_pred HHHHHHHHHHhCCCCcCEEEEeCCchhHHHHHHHHHHHHhhhhccCcccccccccccccccccccCCCCeEEEECCCccc
Confidence 3444555555653222 3467799999999999888766421 110 014778874 57898
Q ss_pred ccHHHHHHCCcE-----------EEEEcCCCC-C-------------CCCHHHHHHHHHhcCC---CEEEEEEEcC-CCc
Q 001989 692 TNPATAAMCGMK-----------IVSVGTDAK-G-------------NINIEELRKAAEANRD---NLSTLMVTYP-STH 742 (985)
Q Consensus 692 ~~~~~a~~~G~~-----------vv~v~~d~~-g-------------~iD~e~L~~~i~~~~~---~t~~Vvv~~p-n~~ 742 (985)
.........|.. +..+++... . ..|+++|+++|+++.+ ++++|+++.. |.+
T Consensus 192 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~vive~v~~~~ 271 (472)
T 1ohv_A 192 RTMGCLATTHSKAIHKIDIPSFDWPIAPFPRLKYPLEEFVKENQQEEARCLEEVEDLIVKYRKKKKTVAGIIVEPIQSEG 271 (472)
T ss_dssp SSHHHHHHCCSCHHHHTTSCCCCCCEECCCCCCSSGGGCHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECSSBCTT
T ss_pred ccHHHHhcCCCccccccCCCCCCCcccCCCcccCccccccccchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEcCCcCCC
Confidence 877665443321 112333110 0 1268999999974211 7898888753 568
Q ss_pred cccccC----HHHHHHHHHHcCCEEEEEccccccccCCC---CCCccC----CcEEEeCCcccccccCCCCCCceEEEEE
Q 001989 743 GVYEEG----IDEICKIIHDNGGQVYMDGANMNAQVGLT---SPGYIG----ADVCHLNLHKTFCIPHGGGGPGMGPIGV 811 (985)
Q Consensus 743 G~i~~d----i~eI~~la~~~galliVD~a~~~~~~~l~---~pg~~g----~Di~~~s~hK~l~~p~g~GGPg~G~i~~ 811 (985)
|++. + +++|.++|+++|++||+|++|. +++-.. ....+| +|++++| |++ + || |+++
T Consensus 272 G~~~-~~~~~l~~l~~l~~~~g~lli~DEv~~-g~g~~g~~~~~~~~gv~~~~Di~t~s--K~~-l----~G---G~~~- 338 (472)
T 1ohv_A 272 GDNH-ASDDFFRKLRDISRKHGCAFLVDEVQT-GGGSTGKFWAHEHWGLDDPADVMTFS--KKM-M----TG---GFFH- 338 (472)
T ss_dssp TCBC-CCHHHHHHHHHHHHHTTCEEEEECTTT-TTTTTSSSSGGGGGCCSSCCSEEEEC--GGG-S----SE---EEEE-
T ss_pred CCCC-CCHHHHHHHHHHHHHhCCEEEEeCccc-CCCCCCCchhccccCCCCCCCEEEEc--ccc-c----cC---CccC-
Confidence 9876 5 9999999999999999999985 222111 111234 7888765 873 1 22 6665
Q ss_pred cccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhcc--
Q 001989 812 KKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKH-- 889 (985)
Q Consensus 812 ~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~g-- 889 (985)
++++....+... . +++.+++..++++.+.|..+..+++ .++..+++++|+++|++.
T Consensus 339 ~~~~~~~~~~~~---------------~----~T~~~~~~~~aaa~aal~~~~~~~~---~~~~~~~~~~l~~~L~~l~~ 396 (472)
T 1ohv_A 339 KEEFRPNAPYRI---------------F----NTWLGDPSKNLLLAEVINIIKREDL---LSNAAHAGKVLLTGLLDLQA 396 (472)
T ss_dssp CGGGSCSSSSSS---------------C----CSSSSCHHHHHHHHHHHHHHHHTTH---HHHHHHHHHHHHHHHHHHHH
T ss_pred chhhcccccccc---------------c----CccCccHHHHHHHHHHHHHHHhCCH---HHHHHHHHHHHHHHHHHHHh
Confidence 655432111100 0 1122244445555666666654443 456677888888888752
Q ss_pred -CC--ee-ecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCCCCCCCEEEEeccCCCCHHHHHHHHccC
Q 001989 890 -YP--IL-FRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKSWTGIVMLSS 965 (985)
Q Consensus 890 -~~--l~-~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~~p~~~~lris~t~~~t~eeId~~~~~~ 965 (985)
+. +. ..+ .+. + +.+++.. +....++.++|.++|+.+.... .+.||++++..+|++|||+ +++
T Consensus 397 ~~~~~v~~~~~-~g~-~--~~~~~~~-----~~~~~~~~~~l~~~Gv~~~~~g---~~~iRi~~~~~~t~e~i~~--~~~ 462 (472)
T 1ohv_A 397 RYPQFISRVRG-RGT-F--CSFDTPD-----ESIRNKLISIARNKGVMLGGCG---DKSIRFRPTLVFRDHHAHL--FLN 462 (472)
T ss_dssp HCTTTCEEEEE-ETT-E--EEEECSS-----HHHHHHHHHHHHHTTEECEEET---TTEEEECCCTTCCHHHHHH--HHH
T ss_pred hCCCcEEeecC-Cce-E--EEEEeCC-----hhHHHHHHHHHHHCCeEEecCC---CCEEEEECCCCCCHHHHHH--HHH
Confidence 22 21 111 111 1 2334331 1135689999999999875432 3799999999999999999 888
Q ss_pred ChhHHHHhhc
Q 001989 966 PSEKKLHRLK 975 (985)
Q Consensus 966 ~l~~~~~~~~ 975 (985)
.|++++.++|
T Consensus 463 ~l~~~l~~~~ 472 (472)
T 1ohv_A 463 IFSDILADFK 472 (472)
T ss_dssp HHHHHHHTC-
T ss_pred HHHHHHHhcC
Confidence 9998887653
|
| >1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=2.7e-14 Score=163.91 Aligned_cols=279 Identities=10% Similarity=0.021 Sum_probs=184.4
Q ss_pred HHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc---
Q 001989 212 SLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL--- 288 (985)
Q Consensus 212 ~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~--- 288 (985)
...++++.+|+++|.+ ++.+++|||.+++.++.++.. ++||+|+++...|+++...++. .|++++.++.
T Consensus 33 ~~~~l~~~la~~~~~~--~v~~~~ggt~al~~~~~~l~~--~~gd~Vl~~~~~~~~~~~~~~~----~g~~~~~v~~~~~ 104 (394)
T 1o69_A 33 FVNRFEQSVKDYSKSE--NALALNSATAALHLALRVAGV--KQDDIVLASSFTFIASVAPICY----LKAKPVFIDCDET 104 (394)
T ss_dssp HHHHHHHHHHHHHCCS--EEEEESCHHHHHHHHHHHTTC--CTTCEEEEESSSCGGGTHHHHH----TTCEEEEECBCTT
T ss_pred HHHHHHHHHHHHhCCC--cEEEeCCHHHHHHHHHHHcCC--CCCCEEEECCCccHHHHHHHHH----cCCEEEEEEeCCC
Confidence 4567889999999984 588999999888877766533 3789999999999999988864 5888888764
Q ss_pred -----hhhhc-cCC---CEeEEEEEcCCCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCCC---CCc-ccceEEEec
Q 001989 289 -----KDIDY-KSG---DVCGVLVQYPGTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKP---PGE-LGADIVVGS 355 (985)
Q Consensus 289 -----~~l~~-l~~---~t~~V~v~~pn~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~~---~~~-~GaDi~v~s 355 (985)
+++++ +++ ++++|++++ ++|...|+++|.++|+++|+++++| +..+.|.... .+. .++|+..++
T Consensus 105 ~~~d~~~l~~~i~~~~~~~~~v~~~~--~~G~~~~l~~i~~l~~~~~~~li~D-ea~~~g~~~~~~~~~~~~~~~~~s~s 181 (394)
T 1o69_A 105 YNIDVDLLKLAIKECEKKPKALILTH--LYGNAAKMDEIVEICKENDIVLIED-AAEALGSFYKNKALGTFGEFGVYSYN 181 (394)
T ss_dssp SSBCHHHHHHHHHHCSSCCCEEEEEC--GGGCCCCHHHHHHHHHHTTCEEEEE-CTTCTTCEETTEETTSSSSEEEEECC
T ss_pred CCcCHHHHHHHHhcccCCceEEEEEC--CCCChhhHHHHHHHHHHcCCEEEEE-CcCcccceeCCcccccccCcEEEEEe
Confidence 34555 544 689999886 6899999999999999999999995 3444443211 112 357888887
Q ss_pred C-ccccccCCCCCCcEEEEEEc-hhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHH
Q 001989 356 A-QRFGVPMGYGGPHAAFLATS-QEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAM 433 (985)
Q Consensus 356 ~-k~lg~P~~~GGP~~G~l~~~-~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~ 433 (985)
. |.+ ||+++|+++++ +++.+.+.....+. .+ ....| |. +..++..+|+++ .+..+ +
T Consensus 182 ~~K~l------~~~~~G~~~~~~~~l~~~l~~~~~~~-~~--~~~~~----~~--~~~g~~~~~~~~------~aa~~-l 239 (394)
T 1o69_A 182 GNKII------TTSGGGMLIGKNKEKIEKARFYSTQA-RE--NCLHY----EH--LDYGYNYRLSNV------LGAIG-V 239 (394)
T ss_dssp TTSSS------CCSSCEEEEESCHHHHHHHHHHTBTC-CC--SSSSC----CC--SSCCCBCBCCHH------HHHHH-H
T ss_pred CCccC------CCCCceEEEECCHHHHHHHHHHHHhc-cc--cCccc----cc--cccCcccCcCHH------HHHHH-H
Confidence 6 644 33457999995 67665542110000 00 00001 10 011122233333 11111 1
Q ss_pred HHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCC-----CCcceEEEecC----------------------C--
Q 001989 434 YAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGL-----PFFDTVKVKCA----------------------D-- 484 (985)
Q Consensus 434 ~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~-----~~~~~~~~~~~----------------------~-- 484 (985)
.. .+-+++..++..++.+++.+.|+++ +++... +.+..+.+.++ +
T Consensus 240 --~~--l~~l~~~~~~~~~~~~~l~~~L~~~--~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (394)
T 1o69_A 240 --AQ--MEVLEQRVLKKREIYEWYKEFLGEY--FSFLDELENSRSNRWLSTALINFDKNELNACQKDINISQKNITLHPK 313 (394)
T ss_dssp --HH--HTTHHHHHHHHHHHHHHHHHHHTTT--EECCCCCTTEECCCSSEEEEESCCGGGSCCCCEEEECCCCCCCCCHH
T ss_pred --HH--HHHHHHHHHHHHHHHHHHHHHhccc--ccccCCCCCCcceeEEEEEEecchhhccccccccccccccccccccC
Confidence 11 1236678888899999999999886 665532 12223444443 2
Q ss_pred HHHHHHHHHHcCceeeeec---------C---------------CeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 485 AHAIASAAYKIEMNLRVVD---------S---------------NTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 485 ~~~v~~~L~~~GI~~~~~~---------~---------------~~lris~t~~~t~edId~li~aL~~ 529 (985)
..++.+.|.++||.++... . ..+++..+.++|+||+|+++++|++
T Consensus 314 ~~~l~~~L~~~gI~v~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~edi~~~~~~l~~ 382 (394)
T 1o69_A 314 ISKLIEDLKNKQIETRPLWKAMHTQEVFKGAKAYLNGNSELFFQKGICLPSGTAMSKDDVYEISKLILK 382 (394)
T ss_dssp HHHHHHHHHHTTCCCBCCCCCGGGCGGGTTCEEEECSHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCcccccCCccccchhhhccCCCCChHHHHHhcCeEEccCCCCCCHHHHHHHHHHHHH
Confidence 6789999999999775321 0 3466667889999999999999974
|
| >2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum pernix} PDB: 2zsl_A* 2zsm_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=3.8e-14 Score=164.81 Aligned_cols=291 Identities=12% Similarity=0.113 Sum_probs=178.1
Q ss_pred HHHHHHHHHHHHh-CCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEE-cCCCCcccHHHHH------------
Q 001989 633 MFNNLGEWLCTIT-GFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCII-PVSAHGTNPATAA------------ 698 (985)
Q Consensus 633 ~~~e~~~~la~l~-G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv-~~~~Hg~~~~~a~------------ 698 (985)
...++++++++++ +.+ ..++.+||++|+++++.++|.+. ++++||+ ...+||.......
T Consensus 97 ~~~~l~~~la~~~~~~~-~v~~~~sgseA~~~al~~ar~~~------~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~p 169 (434)
T 2epj_A 97 AEVLLAEKILGYVKRGG-MIRFVNSGTEATMTAIRLARGYT------GRDLILKFDGCYHGSHDAVLVAAGSAAAHYGVP 169 (434)
T ss_dssp HHHHHHHHHHHHHCTTC-EEEEESSHHHHHHHHHHHHHHHH------CCCEEEEEETCCCCSSGGGSEECC------CEE
T ss_pred HHHHHHHHHHHhCCCCC-EEEEeCCHHHHHHHHHHHHHHhh------CCCeEEEEcCCcCCCCHHHHHhcCCCccccCCC
Confidence 4567889999998 443 34667889999988887766542 3456666 4567875432211
Q ss_pred -HCCc------EEEEEcCCCCCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccC----HHHHHHHHHHcCCEEEEE
Q 001989 699 -MCGM------KIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEG----IDEICKIIHDNGGQVYMD 766 (985)
Q Consensus 699 -~~G~------~vv~v~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~d----i~eI~~la~~~galliVD 766 (985)
..|+ +++.+|. .|+++|+++++++.+++++|+++.. +.+|.+. + +++|.++|+++|+++|+|
T Consensus 170 ~~~g~~~~~~~~~~~~~~-----~d~~~le~~l~~~~~~~~~vi~ep~~~~~G~~~-~~~~~l~~l~~l~~~~g~~lI~D 243 (434)
T 2epj_A 170 TSAGVPEAVARLTLVTPY-----NDVEALERVFAEYGDRIAGVIVEPVIANAGVIP-PRREFLAALQRLSRESGALLILD 243 (434)
T ss_dssp SSTTCCHHHHTTEEEEET-----TCHHHHHHHHHHHGGGEEEEEECSSBCSSSCBC-CCHHHHHHHHHHHHHHTCEEEEE
T ss_pred CCCCCCCcccCceEecCC-----CCHHHHHHHHHhCCCCEEEEEEeCCcCCCCccC-CCHHHHHHHHHHHHHcCCEEEEE
Confidence 1243 3555665 3899999999743346777766543 3479876 6 999999999999999999
Q ss_pred ccccccccCCCCCC-----ccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCC
Q 001989 767 GANMNAQVGLTSPG-----YIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGT 841 (985)
Q Consensus 767 ~a~~~~~~~l~~pg-----~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~ 841 (985)
++|. ++ .....+ ...+|++++ +|+|+ +|..+|++++++++.+.+... +. . .
T Consensus 244 Ev~~-g~-~~g~~~~~~~~~~~~di~s~--sK~l~-----~G~~~G~v~~~~~~~~~l~~~--~~-----------~--~ 299 (434)
T 2epj_A 244 EVVT-GF-RLGLEGAQGYFNIEGDIIVL--GKIIG-----GGFPVGAVAGSREVMSLLTPQ--GK-----------V--F 299 (434)
T ss_dssp ETTT-TT-TSSTTHHHHHHTCCCSEEEE--EGGGG-----TTSSCEEEEECHHHHTTBTTT--SS-----------B--C
T ss_pred cchh-ce-eCCcchhhHHhCCCCCeeee--cchhc-----CCcceeeeeecHHHHHhhccC--CC-----------c--c
Confidence 9985 22 111111 124788755 59885 245688999998776654321 00 0 0
Q ss_pred CCCcchhhhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhcc---CCe--eecCCCCceeeEEEEEecCcc---
Q 001989 842 IAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKH---YPI--LFRGVNGTVAHEFIVDLRGLK--- 913 (985)
Q Consensus 842 i~s~~~g~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~g---~~l--~~~~~~~~~~~~~iv~~~~~~--- 913 (985)
..+++.+++..++++.+.|..+..+. ..++..+++++++++|++. +++ ...+ .+.+ +.+.+....
T Consensus 300 ~~~t~~~~~~~~aa~~a~l~~~~~~~---~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~-~g~~---~~i~~~~~~~~~ 372 (434)
T 2epj_A 300 NAGTFNAHPITMAAGLATLKALEEEP---VYSVSREAAKALEEAASEVLDRTGLPYTINR-VESM---MQLFIGVEEVSN 372 (434)
T ss_dssp CCCTTTTCHHHHHHHHHHHHHHHHSC---HHHHHHHHHHHHHHHHHHHHHHHTCCEEEEE-ETTE---EEEEETCSCCSS
T ss_pred cCCCCCcCHHHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHHHHHHHHhhCCCcEEEEE-eeeE---EEEEEeCCCccc
Confidence 00112224444555556666554433 3456667788888888652 122 1111 1222 334443100
Q ss_pred -----ccCCCCHHHHHHHHHHCCCccCCCCCCCCCEEEEeccCCCCHHHHHHHHccCChhHHHHhh
Q 001989 914 -----NTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRL 974 (985)
Q Consensus 914 -----~~~g~~~~~v~~~L~~~Gi~~~~~~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~ 974 (985)
........++.+.|.++||.+..... ..+ .++..+|++|+++ ++++|+++++++
T Consensus 373 ~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~---~~~--~~~~~~t~e~i~~--~l~~l~~~l~~~ 431 (434)
T 2epj_A 373 AAQARKADKKFYVKLHEEMLRRGVFIAPSNL---EAV--FTGLPHQGEALEI--AVEGLRSSLKTV 431 (434)
T ss_dssp HHHHTTSCHHHHHHHHHHHHHTTEECCSSTT---SCE--ECCTTCSHHHHHH--HHHHHHHHHHHH
T ss_pred chhccccCHHHHHHHHHHHHHCCeEEeccCC---CcE--EEeccCCHHHHHH--HHHHHHHHHHHH
Confidence 00001256789999999998865432 234 4567899999999 888999888765
|
| >3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: LLP; 1.50A {Homo sapiens} SCOP: c.67.1.1 PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=6.1e-14 Score=162.04 Aligned_cols=268 Identities=11% Similarity=0.096 Sum_probs=176.8
Q ss_pred HHHHHhcC--CCC-cceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc------
Q 001989 218 TMIADLTG--LPM-SNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL------ 288 (985)
Q Consensus 218 ~~ia~L~g--~~~-~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~------ 288 (985)
+.+.+..| .++ .++.+++|+|.++++++.++ . ++||+|+++...|+.+...++. .|.+++.++.
T Consensus 78 ~~~~~~~g~~~~~~~~i~~~~g~~~a~~~~~~~~-~--~~gd~vl~~~p~~~~~~~~~~~----~g~~~~~~~~~~~~~~ 150 (422)
T 3fvs_A 78 SFFGELLGQEIDPLRNVLVTVGGYGALFTAFQAL-V--DEGDEVIIIEPFFDCYEPMTMM----AGGRPVFVSLKPGPIQ 150 (422)
T ss_dssp HHHHHHHTCCCCHHHHEEEESHHHHHHHHHHHHH-C--CTTCEEEEEESCCTTHHHHHHH----TTCEEEEEECBCCCCC
T ss_pred HHHHHhhCCCCCCCCcEEEECChHHHHHHHHHHH-c--CCCCEEEEcCCCchhhHHHHHH----cCCEEEEEeccccccc
Confidence 34444444 444 57889999998887776654 2 3889999999999998887653 4777766543
Q ss_pred --------------hhhhc-cCCCEeEEEEEcC-CCCeeec---cHHHHHHHHHhCCcEEEEEecCccccCCC-----C-
Q 001989 289 --------------KDIDY-KSGDVCGVLVQYP-GTEGEVL---DYGDFIKNAHANGVKVVMATDLLALTILK-----P- 343 (985)
Q Consensus 289 --------------~~l~~-l~~~t~~V~v~~p-n~~G~v~---di~~I~~~a~~~galliV~a~~~~lg~l~-----~- 343 (985)
+++++ +++++++|++.+| |.+|.+. ++++|+++|+++|+++++|. ..+..... +
T Consensus 151 ~G~~~~~~~~~~d~~~l~~~~~~~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De-~~~~~~~~~~~~~~~ 229 (422)
T 3fvs_A 151 NGELGSSSNWQLDPMELAGKFTSRTKALVLNTPNNPLGKVFSREELELVASLCQQHDVVCITDE-VYQWMVYDGHQHISI 229 (422)
T ss_dssp SSSCCBGGGSBCCHHHHHTTCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEC-TTTTCBCTTCCCCCG
T ss_pred ccccccccCCCCCHHHHHhhcCCCceEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCcEEEEEc-cchhhccCCCCCCCh
Confidence 34555 7788999999998 7899987 69999999999999999953 33321110 1
Q ss_pred ---CCcccceEEEecC-ccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCC
Q 001989 344 ---PGELGADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSN 419 (985)
Q Consensus 344 ---~~~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsn 419 (985)
+..++.++++.|. |.|+.| |..+|++++++++++.+... + ..+.+
T Consensus 230 ~~~~~~~~~~i~~~S~sK~~g~~----G~r~G~~~~~~~~~~~~~~~--------------------------~-~~~~~ 278 (422)
T 3fvs_A 230 ASLPGMWERTLTIGSAGKTFSAT----GWKVGWVLGPDHIMKHLRTV--------------------------H-QNSVF 278 (422)
T ss_dssp GGSTTTGGGEEEEEEHHHHHTCG----GGCCEEEECCHHHHHHHHHH--------------------------H-HTTTC
T ss_pred hhcccccCcEEEEecchhccCCc----cceEEEEEeCHHHHHHHHHH--------------------------H-hhccC
Confidence 1235677888887 888532 34579999888877654100 0 01111
Q ss_pred ccchhHHHHHHHHHHHHH------hCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCCCcceEEEecCC---------
Q 001989 420 ICTAQALLANMAAMYAVY------HGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDTVKVKCAD--------- 484 (985)
Q Consensus 420 i~t~~~l~a~~aa~~l~~------~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~--------- 484 (985)
.++.....+..+++ .. ...+.++++.++..++.+++.+.|+++| +++..+....-+.+.++.
T Consensus 279 ~~~~~~~~a~~~~l--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (422)
T 3fvs_A 279 HCPTQSQAAVAESF--EREQLLFRQPSSYFVQFPQAMQRCRDHMIRSLQSVG-LKPIIPQGSYFLITDISDFKRKMPDLP 355 (422)
T ss_dssp CCCHHHHHHHHHHH--HHHHHTTTCTTCHHHHHHHHHHHHHHHHHHHHHTTT-CEEEBCSBSSEEEEECHHHHHHCCCCC
T ss_pred CCCcHHHHHHHHHH--hhccccccchHHHHHHHHHHHHHHHHHHHHHHHHcC-CeecCCCeeeEEEEechhhcccccccc
Confidence 11112222222222 21 2356788899999999999999999997 886532111112233221
Q ss_pred -------HHHHHHHHH-HcCceeeee-----------cCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 485 -------AHAIASAAY-KIEMNLRVV-----------DSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 485 -------~~~v~~~L~-~~GI~~~~~-----------~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
..++.+.|. ++||.+..- ..+.+|++++. |+++|+++++.|..
T Consensus 356 ~~~~~~~~~~~~~~ll~~~gv~v~~g~~f~~~~~~~~~~~~iRis~~~--~~e~i~~~l~~l~~ 417 (422)
T 3fvs_A 356 GAVDEPYDRRFVKWMIKNKGLVAIPVSIFYSVPHQKHFDHYIRFCFVK--DEATLQAMDEKLRK 417 (422)
T ss_dssp CCTTCCHHHHHHHHHHHHHCEECEEGGGGSCHHHHTTSCSEEEEECCC--CHHHHHHHHHHHHH
T ss_pred cccccccHHHHHHHHHHhcCEEEeCcHHhcCCcCCCCCCCeEEEEecC--CHHHHHHHHHHHHH
Confidence 346777755 579977431 14789999886 99999999998873
|
| >3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} SCOP: c.67.1.4 PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=2.9e-14 Score=165.69 Aligned_cols=271 Identities=13% Similarity=0.099 Sum_probs=176.5
Q ss_pred HHHHHHHHhcC--------CCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEe
Q 001989 215 NFQTMIADLTG--------LPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVS 286 (985)
Q Consensus 215 e~q~~ia~L~g--------~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v 286 (985)
++++.+|++++ .++.++.+++|+|.++++++.++. ++||+|++++..|+++...++. ..|.+++.+
T Consensus 90 ~l~~~la~~~~~~~~~~~~~~~~~v~~~~gg~~a~~~~~~~l~---~~gd~vl~~~p~~~~~~~~~~~---~~g~~~~~~ 163 (435)
T 3piu_A 90 AFKKAMVDFMAEIRGNKVTFDPNHLVLTAGATSANETFIFCLA---DPGEAVLIPTPYYPGFDRDLKW---RTGVEIVPI 163 (435)
T ss_dssp HHHHHHHHHHHHHTTTSSCCCGGGEEEEEHHHHHHHHHHHHHC---CTTCEEEEEESCCTTHHHHTTT---TTCCEEEEE
T ss_pred HHHHHHHHHHHHhhCCCCCCCHHHEEEcCChHHHHHHHHHHhc---CCCCeEEECCCccccHHHHHHH---hcCCEEEEe
Confidence 46677788777 567789999999988888776652 3889999999999998877531 468888776
Q ss_pred Cc----------hhhhc-cC------CCEeEEEEEcC-CCCeeec---cHHHHHHHHHhCCcEEEEEecCccccCCCC--
Q 001989 287 DL----------KDIDY-KS------GDVCGVLVQYP-GTEGEVL---DYGDFIKNAHANGVKVVMATDLLALTILKP-- 343 (985)
Q Consensus 287 ~~----------~~l~~-l~------~~t~~V~v~~p-n~~G~v~---di~~I~~~a~~~galliV~a~~~~lg~l~~-- 343 (985)
+. ++|++ +. .++++|++++| |.+|.+. ++++|+++|+++|+++++| +..+.+....
T Consensus 164 ~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~D-ea~~~~~~~~~~ 242 (435)
T 3piu_A 164 HCTSSNGFQITETALEEAYQEAEKRNLRVKGVLVTNPSNPLGTTMTRNELYLLLSFVEDKGIHLISD-EIYSGTAFSSPS 242 (435)
T ss_dssp ECCGGGTSCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEE-CTTGGGCCSSSC
T ss_pred eCCCccCCcCCHHHHHHHHHHHHhcCCCeEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEe-ccccccccCCCC
Confidence 53 34544 43 38999999998 7799885 4688999999999999995 3433322211
Q ss_pred C---C----cccc---------eEEEecC-ccccccCCCCCCcEEEEEEc-hhhHhcCCCceeeeeecCCCCcceeeecc
Q 001989 344 P---G----ELGA---------DIVVGSA-QRFGVPMGYGGPHAAFLATS-QEYKRMMPGRIVGVSIDSSGKPALRVAMQ 405 (985)
Q Consensus 344 ~---~----~~Ga---------Di~v~s~-k~lg~P~~~GGP~~G~l~~~-~~~~~~lp~~~vG~t~d~~g~~~~~l~l~ 405 (985)
. . ++|+ ++++++. |.|+. +|..+|+++++ +.+.+.+.
T Consensus 243 ~~~~~~~~~~~~~d~~~~~~~~~i~i~s~sK~~g~----~G~r~G~~~~~~~~~~~~~~--------------------- 297 (435)
T 3piu_A 243 FISVMEVLKDRNCDENSEVWQRVHVVYSLSKDLGL----PGFRVGAIYSNDDMVVAAAT--------------------- 297 (435)
T ss_dssp CCCHHHHHHC-------CGGGGEEEEEESSSSSCC----GGGCEEEEEESCHHHHHHHH---------------------
T ss_pred CcCHHHhccccccccccCCCCCEEEEEeeecccCC----CceeEEEEEeCCHHHHHHHH---------------------
Confidence 0 1 1122 2888886 87753 23457888884 44443320
Q ss_pred cccccccccccCCCccchhHHHHHHHHHHHHHhC--cchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCCCcceEEEecC
Q 001989 406 TREQHIRRDKATSNICTAQALLANMAAMYAVYHG--PEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDTVKVKCA 483 (985)
Q Consensus 406 tre~~irre~atsni~t~~~l~a~~aa~~l~~~g--~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~~~~~~~~~~~ 483 (985)
+...+ ..++....+.++++ +.... .+.++++.++..++.+++++.|++.| +++.......-+.+.++
T Consensus 298 -------~~~~~--~~~~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~g~~~~~~l~ 366 (435)
T 3piu_A 298 -------KMSSF--GLVSSQTQHLLSAM-LSDKKLTKNYIAENHKRLKQRQKKLVSGLQKSG-ISCLNGNAGLFCWVDMR 366 (435)
T ss_dssp -------HHGGG--SCCCHHHHHHHHHH-HHCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT-CEECCCCSSSEEEEECG
T ss_pred -------HHhhc--CCCCHHHHHHHHHH-hcChHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CcccCCCeeEEEEEEcc
Confidence 00000 01111221222221 11110 23457778888899999999999987 88764322112333333
Q ss_pred C---------HHHHHHHHHHc-Cceeeee------cCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 484 D---------AHAIASAAYKI-EMNLRVV------DSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 484 ~---------~~~v~~~L~~~-GI~~~~~------~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
. ..++.++|.++ ||.+... .++.+|+++... |++||+++++.|.+
T Consensus 367 ~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRi~~~~~-~~e~i~~~l~~l~~ 427 (435)
T 3piu_A 367 HLLRSNTFEAEMELWKKIVYEVHLNISPGSSCHCTEPGWFRVCFANL-PERTLDLAMQRLKA 427 (435)
T ss_dssp GGSSSSSHHHHHHHHHHHHHTSCEECEEGGGGTCSSTTEEEEECSSS-CHHHHHHHHHHHHH
T ss_pred cccccCCchhHHHHHHHHHHHCCEEEeCCcccCCCCCCEEEEEeeCC-CHHHHHHHHHHHHH
Confidence 1 45788888877 9987542 257899999766 99999999999874
|
| >3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.62 E-value=1.3e-14 Score=164.93 Aligned_cols=270 Identities=11% Similarity=0.087 Sum_probs=177.0
Q ss_pred HHHHHHHhcC------CCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeC--
Q 001989 216 FQTMIADLTG------LPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSD-- 287 (985)
Q Consensus 216 ~q~~ia~L~g------~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~-- 287 (985)
+++.+|++++ .++.++.+++|+|.++++++.++. ++||+|+++...|+++...++. .|.+++.++
T Consensus 63 lr~~la~~~~~~~~~~~~~~~i~~t~g~~~a~~~~~~~~~---~~gd~vl~~~~~~~~~~~~~~~----~g~~~~~~~~~ 135 (377)
T 3fdb_A 63 LSQATAEFYADRYGYQARPEWIFPIPDVVRGLYIAIDHFT---PAQSKVIVPTPAYPPFFHLLSA----TQREGIFIDAT 135 (377)
T ss_dssp HHHHHHHHHHHHHCCCCCGGGEEEESCHHHHHHHHHHHHS---CTTCCEEEEESCCTHHHHHHHH----HTCCEEEEECT
T ss_pred HHHHHHHHHHHHhCCCCCHHHEEEeCChHHHHHHHHHHhc---CCCCEEEEcCCCcHhHHHHHHH----cCCEEEEccCC
Confidence 4566666666 667789999999988887776542 3789999999999998888754 366666664
Q ss_pred ----chhhhc-cCCCEeEEEEEcC-CCCeeec---cHHHHHHHHHhCCcEEEEEecCccccCCC---CC---C---cccc
Q 001989 288 ----LKDIDY-KSGDVCGVLVQYP-GTEGEVL---DYGDFIKNAHANGVKVVMATDLLALTILK---PP---G---ELGA 349 (985)
Q Consensus 288 ----~~~l~~-l~~~t~~V~v~~p-n~~G~v~---di~~I~~~a~~~galliV~a~~~~lg~l~---~~---~---~~Ga 349 (985)
++++++ +++++++|++.+| |.+|.+. ++++|+++|+++|+++++|. ..+..... .+ . ..+.
T Consensus 136 ~~~d~~~l~~~l~~~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De-~~~~~~~~g~~~~~~~~~~~~~~~ 214 (377)
T 3fdb_A 136 GGINLHDVEKGFQAGARSILLCNPYNPLGMVFAPEWLNELCDLAHRYDARVLVDE-IHAPLVFDGQHTVAAGVSDTAASV 214 (377)
T ss_dssp TSCCHHHHHHHHHTTCCEEEEESSBTTTTBCCCHHHHHHHHHHHHHTTCEEEEEC-TTGGGBSSSCCCCGGGSCHHHHHH
T ss_pred CCCCHHHHHHHhccCCCEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEc-ccchhhcCCCCCcccHHHccCCCc
Confidence 356666 7777899999998 7899886 57888888999999999953 33321111 11 1 2455
Q ss_pred eEEEecC-ccccccCCCCCCcEEEEEE-chhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHH
Q 001989 350 DIVVGSA-QRFGVPMGYGGPHAAFLAT-SQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALL 427 (985)
Q Consensus 350 Di~v~s~-k~lg~P~~~GGP~~G~l~~-~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~ 427 (985)
+++++|. |.++.| |..+|++.+ ++++.+.+.. ... . ...+.|. ....
T Consensus 215 ~i~~~s~sK~~g~~----G~r~G~~~~~~~~~~~~~~~----------~~~------------~--~~~~~~~---~~~~ 263 (377)
T 3fdb_A 215 CITITAPSKAWNIA----GLKCAQIIFSNPSDAEHWQQ----------LSP------------V--IKDGAST---LGLI 263 (377)
T ss_dssp EEEEECSTTTTTCG----GGCCEEEECCSHHHHHHHHH----------SCH------------H--HHCCCCH---HHHH
T ss_pred EEEEEeChHhccCc----chhheEEEeCCHHHHHHHHH----------HHH------------h--hcCCCCH---HHHH
Confidence 6888887 877532 334687776 5666554410 000 0 0011111 1222
Q ss_pred HHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhc-CCCeEEcCCCCcceEEEecCC---HHHHHHHHHHc-Cceeeee
Q 001989 428 ANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKK-LGTVEVQGLPFFDTVKVKCAD---AHAIASAAYKI-EMNLRVV 502 (985)
Q Consensus 428 a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~-~g~~~~~~~~~~~~~~~~~~~---~~~v~~~L~~~-GI~~~~~ 502 (985)
+..+++ . .+.+.++++.++..++.+++.+.|++ ++++++..+...-.+.++++. ..++.+.|.++ ||.+...
T Consensus 264 a~~~~l--~-~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g 340 (377)
T 3fdb_A 264 AAEAAY--R-YGTDFLNQEVAYLKNNHDFLLHEIPKRIPGAKITPMQATYLMWIDFRDTTIEGSPSEFFIEKAKVAMNDG 340 (377)
T ss_dssp HHHHHH--H-HCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCEECCCSBCSEEEEECTTSCCCSCHHHHHHHHHCEECEEG
T ss_pred HHHHHH--h-ccHHHHHHHHHHHHHHHHHHHHHHHhhCCCceEecCCeeEEEEEECcccCCCHHHHHHHHHhCCEEecCC
Confidence 222222 2 33556788899999999999999998 433887643211122344442 35667777665 9988542
Q ss_pred ------cCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 503 ------DSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 503 ------~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
.++.+|++++ +++++|+++++.|.+
T Consensus 341 ~~~~~~~~~~~Ris~~--~~~e~i~~~l~~l~~ 371 (377)
T 3fdb_A 341 AWFGEDGTGFCRLNFA--TSREVLEEAIDRMAK 371 (377)
T ss_dssp GGGCGGGTTEEEEECC--SCHHHHHHHHHHHHH
T ss_pred hhccCCCCCEEEEEeC--CCHHHHHHHHHHHHH
Confidence 2588999988 489999999998874
|
| >3gbx_A Serine hydroxymethyltransferase; structural genomics, IDP01011, serine hydroxymethyltransfera salmonella typhimurium.; HET: MSE; 1.80A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1dfo_A* 3g8m_A* 1eqb_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=5.4e-15 Score=170.43 Aligned_cols=275 Identities=11% Similarity=0.062 Sum_probs=172.1
Q ss_pred HHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHH-hhcCCCeEEEE------
Q 001989 213 LLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICIT-RADGFDIKVVV------ 285 (985)
Q Consensus 213 i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~-~a~~~gi~v~~------ 285 (985)
...+++++++++|++.+++. +.+||.++++++.++ . ++||+|+++...|+++...... ...+.++....
T Consensus 78 ~~~~~~~la~~~~~~~~~v~-~~sGs~a~~~a~~~~-~--~~gd~v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 153 (420)
T 3gbx_A 78 EQLAIDRAKELFGADYANVQ-PHSGSQANFAVYTAL-L--QPGDTVLGMNLAQGGHLTHGSPVNFSGKLYNIVPYGIDES 153 (420)
T ss_dssp HHHHHHHHHHHHTCSEEECC-CSSHHHHHHHHHHHH-C--CTTCEEEEEEEC------------CHHHHSEEEEEEECTT
T ss_pred HHHHHHHHHHHhCCCCceeE-ecCcHHHHHHHHHHh-c--CCCCEEEecchhhcceeccchhhhhcccceeEEeccCCcc
Confidence 33456899999999876664 455677777665544 2 3899999999999885422211 01112233332
Q ss_pred --eCchhhhc-cCC-CEeEEEEEcCCCCeeeccHHHHHHHHHhCCcEEEEEecCccccCC-----CCCCcccceEEEecC
Q 001989 286 --SDLKDIDY-KSG-DVCGVLVQYPGTEGEVLDYGDFIKNAHANGVKVVMATDLLALTIL-----KPPGELGADIVVGSA 356 (985)
Q Consensus 286 --v~~~~l~~-l~~-~t~~V~v~~pn~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l-----~~~~~~GaDi~v~s~ 356 (985)
+|+++|++ +++ ++++|++++||+ |.+.|+++|.++|+++|+++++| +.++.|.. ..+.. ++||+++|.
T Consensus 154 ~~~d~~~l~~~i~~~~~~~v~~~~~~~-~~~~~l~~l~~l~~~~~~~li~D-e~~~~~~~~~~~~~~~~~-~~di~~~s~ 230 (420)
T 3gbx_A 154 GKIDYDEMAKLAKEHKPKMIIGGFSAY-SGVVDWAKMREIADSIGAYLFVD-MAHVAGLIAAGVYPNPVP-HAHVVTTTT 230 (420)
T ss_dssp CSCCHHHHHHHHHHHCCSEEEECCTTC-CSCCCHHHHHHHHHHTTCEEEEE-CTTTHHHHHTTSSCCSTT-TSSEEEEES
T ss_pred CCcCHHHHHHHHHhcCCeEEEEecCcc-CCccCHHHHHHHHHHcCCEEEEE-CCcchhceecccCCcccc-cCCEEEeec
Confidence 34466766 654 588998888875 66889999999999999999995 34333322 11122 489999998
Q ss_pred -ccccccCCCCCCcEEEEEEch---hhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHH
Q 001989 357 -QRFGVPMGYGGPHAAFLATSQ---EYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAA 432 (985)
Q Consensus 357 -k~lg~P~~~GGP~~G~l~~~~---~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa 432 (985)
|.|++ |..|++++++ ++.+.+...... . ..++++ +....++.++
T Consensus 231 sK~~~g------~~gg~~~~~~~~~~~~~~~~~~~~~------------~-----------~~~~~~---~~~~~a~~~a 278 (420)
T 3gbx_A 231 HKTLAG------PRGGLILAKGGDEELYKKLNSAVFP------------S-----------AQGGPL---MHVIAGKAVA 278 (420)
T ss_dssp SGGGCS------CSCEEEEESSCCHHHHHHHHHHHC---------------------------CCCC---HHHHHHHHHH
T ss_pred ccCCCC------CCceEEEEcCCcHHHHHHhhhhcCC------------C-----------CCCCcc---hhHHHHHHHH
Confidence 87743 3348888886 555443110000 0 001111 1222233222
Q ss_pred HHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCC-CCcceEEEecC--C--HHHHHHHHHHcCceeee------
Q 001989 433 MYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGL-PFFDTVKVKCA--D--AHAIASAAYKIEMNLRV------ 501 (985)
Q Consensus 433 ~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~-~~~~~~~~~~~--~--~~~v~~~L~~~GI~~~~------ 501 (985)
+ .....++++++.++..++.+++++.|++.| ++++.. .....+.+..+ + ...+.+.|.++||.+..
T Consensus 279 ~--~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~~ 355 (420)
T 3gbx_A 279 L--KEAMEPEFKVYQQQVAKNAKAMVEVFLNRG-YKVVSGGTENHLFLLDLVDKNLTGKEADAALGRANITVNKNSVPND 355 (420)
T ss_dssp H--HHTTSHHHHHHHHHHHHHHHHHHHHHHHTT-CEEGGGSCSSSEEEEECGGGTCCHHHHHHHHHHTTEECEEECCTTC
T ss_pred H--HHHHhHhHHHHHHHHHHHHHHHHHHHHhcC-CeeccCCCCCeEEEEEcCCCCCCHHHHHHHHHHCCcEeccccCCCC
Confidence 2 344456788999999999999999999987 888642 22333444432 2 77888899899998765
Q ss_pred ----ecCCeEEEEeccC----CCHHHHHHHHHHHhC
Q 001989 502 ----VDSNTVTASFDET----TTLEDVDKLFIVFAG 529 (985)
Q Consensus 502 ----~~~~~lris~t~~----~t~edId~li~aL~~ 529 (985)
..+..+|+++... .+++||++++++|.+
T Consensus 356 ~~~~~~~~~iRi~~~~~~~~~~~~~~i~~~~~~l~~ 391 (420)
T 3gbx_A 356 PKSPFVTSGIRIGSPAVTRRGFKEAEVKELAGWMCD 391 (420)
T ss_dssp SSCTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHH
T ss_pred ccccCCCcceEEecchhcccCCCHHHHHHHHHHHHH
Confidence 1135699998765 458999999999874
|
| >2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=7.3e-15 Score=168.54 Aligned_cols=272 Identities=12% Similarity=0.069 Sum_probs=182.9
Q ss_pred HHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc-----
Q 001989 214 LNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL----- 288 (985)
Q Consensus 214 ~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~----- 288 (985)
.++++.+|+++|.++.++.+++|++.+++.++.++. ++||+|+++...|+++...++ ..|.+++.++.
T Consensus 77 ~~l~~~la~~~g~~~~~v~~~~g~~~al~~~~~~~~---~~gd~Vl~~~p~y~~~~~~~~----~~g~~~~~~~~~~~~~ 149 (397)
T 2zyj_A 77 APLRAFVAEWIGVRPEEVLITTGSQQALDLVGKVFL---DEGSPVLLEAPSYMGAIQAFR----LQGPRFLTVPAGEEGP 149 (397)
T ss_dssp HHHHHHHHHHHTSCGGGEEEESHHHHHHHHHHHHHC---CTTCEEEEEESCCHHHHHHHH----TTCCEEEEEEEETTEE
T ss_pred HHHHHHHHHHhCCChhhEEEeccHHHHHHHHHHHhC---CCCCEEEEeCCCcHHHHHHHH----HcCCEEEecCcCCCCC
Confidence 357789999999888889999999988887766542 378999999999999888765 35777777643
Q ss_pred --hhhhc-cCC-CEeEEE-EEcC-CCCeeeccH---HHHHHHHHhCCcEEEEEecCccccCC-----CCCCcccce----
Q 001989 289 --KDIDY-KSG-DVCGVL-VQYP-GTEGEVLDY---GDFIKNAHANGVKVVMATDLLALTIL-----KPPGELGAD---- 350 (985)
Q Consensus 289 --~~l~~-l~~-~t~~V~-v~~p-n~~G~v~di---~~I~~~a~~~galliV~a~~~~lg~l-----~~~~~~GaD---- 350 (985)
++|++ +++ ++++|+ +.+| |.+|.+.|. ++|+++|+++|+++++| +..+.... .+...++.|
T Consensus 150 d~~~l~~~l~~~~~~~v~~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~D-e~~~~~~~~g~~~~~~~~~~~~~~~~ 228 (397)
T 2zyj_A 150 DLDALEEVLKRERPRFLYLIPSFQNPTGGLTPLPARKRLLQMVMERGLVVVED-DAYRELYFGEARLPSLFELAREAGYP 228 (397)
T ss_dssp CHHHHHHHHHHCCCSCEEECCBSCTTTCCBCCHHHHHHHHHHHHHHTCCEEEE-CTTTTCBCSSCCCCCHHHHHHHHTCC
T ss_pred CHHHHHHHHhhcCCeEEEECCCCcCCCCCcCCHHHHHHHHHHHHHcCCEEEEe-CCcccccCCCCCCCchhhhCcccCCC
Confidence 45665 554 788875 5677 789998764 59999999999999995 33333221 111334444
Q ss_pred --EEEecC-ccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHH
Q 001989 351 --IVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALL 427 (985)
Q Consensus 351 --i~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~ 427 (985)
++++|. |.|+ | |-.+|++++++++.+.+.... . . ...+++...
T Consensus 229 ~~i~~~s~sK~~~-~----G~r~G~~~~~~~~~~~l~~~~-------------------------~-~--~~~~~~~~~- 274 (397)
T 2zyj_A 229 GVIYLGSFSKVLS-P----GLRVAFAVAHPEALQKLVQAK-------------------------Q-G--ADLHTPMLN- 274 (397)
T ss_dssp CEEEEEESTTTTC-G----GGCCEEEECCHHHHHHHHHHH-------------------------H-H--HHSSCCHHH-
T ss_pred eEEEEeccccccc-c----cceeEEEecCHHHHHHHHHHH-------------------------H-h--hcCCCCHHH-
Confidence 888887 7764 3 234699999988776551100 0 0 001111111
Q ss_pred HHHHHHHHHHhCc-chHHHHHHHHHHHHHHHHHHHhcC-C-CeEEcCCCCcceEEEecCC---HHHHHHHHHHcCceeee
Q 001989 428 ANMAAMYAVYHGP-EGLKTIAQRVHGLAGTFALGLKKL-G-TVEVQGLPFFDTVKVKCAD---AHAIASAAYKIEMNLRV 501 (985)
Q Consensus 428 a~~aa~~l~~~g~-~Gl~~i~~~~~~~a~~l~~~L~~~-g-~~~~~~~~~~~~~~~~~~~---~~~v~~~L~~~GI~~~~ 501 (985)
..++..++.. +. +.++++.++..++.+++.+.|++. + ++++..+....-+.+..+. ..++.+.|.++||.+..
T Consensus 275 ~~a~~~~l~~-~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~gi~v~~ 353 (397)
T 2zyj_A 275 QMLVHELLKE-GFSERLERVRRVYREKAQAMLHALDREVPKEVRYTRPKGGMFVWMELPKGLSAEGLFRRALEENVAFVP 353 (397)
T ss_dssp HHHHHHHHTT-THHHHHHHHHHHHHHHHHHHHHHHHHHSCTTSEECCCSBSSEEEEECSTTCCHHHHHHHHHHTTEEEEE
T ss_pred HHHHHHHHHh-CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCeEEccCCccEEEEEEcCCCCCHHHHHHHHHHCCCEEec
Confidence 1111111221 11 457788888889999999999874 2 3777532222234455542 78899999999998754
Q ss_pred e--------cCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 502 V--------DSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 502 ~--------~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
. .++.+|++++.. |++||++++++|.+
T Consensus 354 g~~f~~~~~~~~~iRis~~~~-~~~~i~~~~~~l~~ 388 (397)
T 2zyj_A 354 GGPFFANGGGENTLRLSYATL-DREGIAEGVRRLGR 388 (397)
T ss_dssp SGGGCTTSCCTTEEEEECSSS-CHHHHHHHHHHHHH
T ss_pred hHHhcCCCCCCCeEEEEcCCC-CHHHHHHHHHHHHH
Confidence 2 247899999885 99999999999974
|
| >7aat_A Aspartate aminotransferase; transferase(aminotransferase); HET: PLP; 1.90A {Gallus gallus} SCOP: c.67.1.1 PDB: 1ivr_A* 1map_A* 1maq_A* 1oxo_A* 1oxp_A* 1ama_A* 1tas_A* 1tat_A* 1tar_A* 8aat_A* 9aat_A* 1aka_A* 1akb_A* 1akc_A* 3pd6_A* 3hlm_A* 3pdb_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=2.3e-15 Score=172.81 Aligned_cols=270 Identities=12% Similarity=0.090 Sum_probs=164.7
Q ss_pred cCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcCC--CCCCCCHHHHHHHHHhcCCCE
Q 001989 654 PNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTD--AKGNINIEELRKAAEANRDNL 731 (985)
Q Consensus 654 ~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~d--~~g~iD~e~L~~~i~~~~~~t 731 (985)
+++|++++..++.+++.+ .+++++|+++++.|..+...++..|++++.+|++ .++.+|++++++.+++.++++
T Consensus 102 t~G~~~al~~~~~~l~~~-----~~~gd~Vlv~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~ 176 (401)
T 7aat_A 102 GISGTGSLRVGANFLQRF-----FKFSRDVYLPKPSWGNHTPIFRDAGLQLQAYRYYDPKTCSLDFTGAMEDISKIPEKS 176 (401)
T ss_dssp EEHHHHHHHHHHHHHHHH-----CTTCCEEEEEESCCTTHHHHHHHTTCEEEEEECEETTTTEECHHHHHHHHTTSCTTC
T ss_pred cCcchHHHHHHHHHHHHh-----ccCCCEEEEcCCCchhHHHHHHHcCCeeEeeeeeccccCccCHHHHHHHHHhCCCCc
Confidence 455666665444444332 1367899999998988888889999999999985 358899999998887544688
Q ss_pred EEEEEEcC-CCccccc--cCHHHHHHHHHHcCCEEEEEccccc-cccCCC--C------CCccCCcEEEeCCcccccccC
Q 001989 732 STLMVTYP-STHGVYE--EGIDEICKIIHDNGGQVYMDGANMN-AQVGLT--S------PGYIGADVCHLNLHKTFCIPH 799 (985)
Q Consensus 732 ~~Vvv~~p-n~~G~i~--~di~eI~~la~~~galliVD~a~~~-~~~~l~--~------pg~~g~Di~~~s~hK~l~~p~ 799 (985)
++|++++| |++|.+. .++++|+++|+++|+++++|.++.. ..++.. . .....-.+++.|++|+|++|
T Consensus 177 ~~v~i~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~~~- 255 (401)
T 7aat_A 177 IILLHACAHNPTGVDPRQEQWKELASVVKKRNLLAYFDMAYQGFASGDINRDAWALRHFIEQGIDVVLSQSYAKNMGLY- 255 (401)
T ss_dssp EEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCCEEEEECTTTSCCG-
T ss_pred EEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEccccccccCCCccccHHHHHHHHhcCCcEEEEecCCcccccc-
Confidence 99999998 4799764 2689999999999999999998731 111100 0 01223467889999998653
Q ss_pred CCCCCceEEEEE---ccc----ccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHH--h-c--HHH
Q 001989 800 GGGGPGMGPIGV---KKH----LAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAM--M-G--SKG 867 (985)
Q Consensus 800 g~GGPg~G~i~~---~~~----l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~--l-g--~eG 867 (985)
|.++|++++ +++ +...+.... ...+.+... .++ .++..++.. + . .+.
T Consensus 256 ---G~RiG~l~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~--~~~----~~~~~~l~~~~~~~~~~~~ 314 (401)
T 7aat_A 256 ---GERAGAFTVICRDAEEAKRVESQLKILI------------RPMYSNPPM--NGA----RIASLILNTPELRKEWLVE 314 (401)
T ss_dssp ---GGCEEEEEEECSSHHHHHHHHHHHHHHH------------HHHHSSCCH--HHH----HHHHHHHHCHHHHHHHHHH
T ss_pred ---cCceEEEEEEeCCHHHHHHHHHHHHHHH------------HhccCCCCh--HHH----HHHHHHhCCHHHHHHHHHH
Confidence 677999886 222 111111000 000111110 111 111112210 0 0 233
Q ss_pred HHHHHHHHHHHHHHHHHHhhc-cCC--eeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCCCCCCCE
Q 001989 868 LTEASKIAILNANYMAKRLEK-HYP--ILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGT 944 (985)
Q Consensus 868 l~~~~~~~~~~a~~l~~~L~~-g~~--l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~~p~~~~ 944 (985)
+.+..++..++++++.+.|++ +.. +....+.+.++ .+ . +.+.+.+...|.++||.+. ..
T Consensus 315 ~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~~~~~~~---~~--~------~~~~~~~~~ll~~~gi~v~-------~~ 376 (401)
T 7aat_A 315 VKGMADRIISMRTQLVSNLKKEGSSHNWQHITDQIGMF---CF--T------GLKPEQVERLTKEFSIYMT-------KD 376 (401)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCSCCHHHHHCCSSE---EE--C------CCCHHHHHHHHHHHCEECC-------TT
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCCceecCCcceE---Ee--c------CCCHHHHHHHHHhCCEecc-------CC
Confidence 455566777888999999976 311 21111112221 11 1 2455666555567799873 24
Q ss_pred EEEeccCCCCHHHHHHHHccCChhHHH
Q 001989 945 LMIEPTESESKSWTGIVMLSSPSEKKL 971 (985)
Q Consensus 945 lris~t~~~t~eeId~~~~~~~l~~~~ 971 (985)
+||++...+++ |||+ +++.|++++
T Consensus 377 ~Ris~~~~~~~-~i~~--~~~~l~~~~ 400 (401)
T 7aat_A 377 GRISVAGVASS-NVGY--LAHAIHQVT 400 (401)
T ss_dssp CEEEGGGCCTT-THHH--HHHHHHHHH
T ss_pred CeEEeccCChh-hHHH--HHHHHHHHh
Confidence 79998865554 5999 777777664
|
| >1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=2.8e-14 Score=165.41 Aligned_cols=268 Identities=14% Similarity=0.153 Sum_probs=177.9
Q ss_pred HHHHHHHHhcC--------CCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEe
Q 001989 215 NFQTMIADLTG--------LPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVS 286 (985)
Q Consensus 215 e~q~~ia~L~g--------~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v 286 (985)
++++.+|+++| .++.++.+++|+|.++++++.++. ++||+|++++..|+++...+ +...|++++.+
T Consensus 87 ~lr~~la~~~~~~~g~~~~~~~~~i~~~~G~~~ai~~~~~~~~---~~gd~Vl~~~p~y~~~~~~~---~~~~g~~~~~v 160 (428)
T 1iay_A 87 EFRKAIAKFMEKTRGGRVRFDPERVVMAGGATGANETIIFCLA---DPGDAFLVPSPYYPAFNRDL---RWRTGVQLIPI 160 (428)
T ss_dssp HHHHHHHHHHHHHTTTCSCCCTTSCEEEEHHHHHHHHHHHHHC---CTTCEEEEESSCCTTHHHHT---TTTTCCEEEEE
T ss_pred HHHHHHHHHHHHhcCCCCCCChhhEEEccChHHHHHHHHHHhC---CCCCeEEEccCCCcchHHHH---HHhcCCEEEEe
Confidence 46677777776 667788899999988887776652 37899999999999887654 33468888887
Q ss_pred Cch----------hhhc-cC------CCEeEEEEEcC-CCCeeecc---HHHHHHHHHhCCcEEEEEecCccccCCC---
Q 001989 287 DLK----------DIDY-KS------GDVCGVLVQYP-GTEGEVLD---YGDFIKNAHANGVKVVMATDLLALTILK--- 342 (985)
Q Consensus 287 ~~~----------~l~~-l~------~~t~~V~v~~p-n~~G~v~d---i~~I~~~a~~~galliV~a~~~~lg~l~--- 342 (985)
+.+ ++++ ++ +++++|++++| |.+|.+.| +++|+++||++|+++++| +..+.....
T Consensus 161 ~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~D-ea~~~~~~~~~~ 239 (428)
T 1iay_A 161 HCESSNNFKITSKAVKEAYENAQKSNIKVKGLILTNPSNPLGTTLDKDTLKSVLSFTNQHNIHLVCD-EIYAATVFDTPQ 239 (428)
T ss_dssp CCCTTTTTCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEE-CTTGGGCCSSSC
T ss_pred ecCCccCCcCCHHHHHHHHHHHHhcCCceEEEEEcCCCCCCCCcCCHHHHHHHHHHHHHCCeEEEEe-ccccccccCCCC
Confidence 642 3443 43 37999999998 56999998 999999999999999995 333321111
Q ss_pred C-C-Cc---------ccce--EEEecC-ccccccCCCCCCcEEEEEE-chhhHhcCCCceeeeeecCCCCcceeeecccc
Q 001989 343 P-P-GE---------LGAD--IVVGSA-QRFGVPMGYGGPHAAFLAT-SQEYKRMMPGRIVGVSIDSSGKPALRVAMQTR 407 (985)
Q Consensus 343 ~-~-~~---------~GaD--i~v~s~-k~lg~P~~~GGP~~G~l~~-~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tr 407 (985)
. + .. ++.| +++.|. |.|+.| |--+|++.+ ++++++.+.
T Consensus 240 ~~~~~~~~~~~~~~~~~~d~viv~~s~sK~~g~~----Glr~G~~~~~~~~~~~~~~----------------------- 292 (428)
T 1iay_A 240 FVSIAEILDEQEMTYCNKDLVHIVYSLSKDMGLP----GFRVGIIYSFNDDVVNCAR----------------------- 292 (428)
T ss_dssp CCCHHHHHTSGGGTTSCTTSEEEEEESTTTSSCG----GGCEEEEEESCHHHHHHHH-----------------------
T ss_pred ccCHHHhccccccccCCCCcEEEEecchhhcCCC----CceEEEEEeCCHHHHHHHH-----------------------
Confidence 0 1 11 2378 788887 777532 223589988 566655441
Q ss_pred cccccccccCCCccchhHHHHHHHHHHHHHhCc-----chHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCCCcceEEEec
Q 001989 408 EQHIRRDKATSNICTAQALLANMAAMYAVYHGP-----EGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDTVKVKC 482 (985)
Q Consensus 408 e~~irre~atsni~t~~~l~a~~aa~~l~~~g~-----~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~~~~~~~~~~ 482 (985)
+...+.+ .+... ..++. ..+.. +.++++.++..++.+++.+.|+++| +++.......-+.+++
T Consensus 293 -----~~~~~~~--~~~~~--~~a~~--~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~g~~~~~~~ 360 (428)
T 1iay_A 293 -----KMSSFGL--VSTQT--QYFLA--AMLSDEKFVDNFLRESAMRLGKRHKHFTNGLEVVG-IKCLKNNAGLFCWMDL 360 (428)
T ss_dssp -----HHHTTSC--CCHHH--HHHHH--HHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CCBCCCSSSSEEEEEC
T ss_pred -----HHHhccc--CCHHH--HHHHH--HHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CcccCCCeeEEEEEec
Confidence 0000001 11111 11111 12221 2467788888999999999999986 7765321111233444
Q ss_pred CC---------HHHHHHHHHHc-Cceeeeec------CCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 483 AD---------AHAIASAAYKI-EMNLRVVD------SNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 483 ~~---------~~~v~~~L~~~-GI~~~~~~------~~~lris~t~~~t~edId~li~aL~~ 529 (985)
++ ..++.+.|.++ ||.+.... ++.+|++++ .+|++|+++++++|.+
T Consensus 361 ~~~~~~~~~~~~~~l~~~l~~~~gi~v~~~~~~~~~~~~~iRis~~-~~~~e~i~~~~~~l~~ 422 (428)
T 1iay_A 361 RPLLRESTFDSEMSLWRVIINDVKLNVSPGSSFECQEPGWFRVCFA-NMDDGTVDIALARIRR 422 (428)
T ss_dssp GGGCSSSSHHHHHHHHHHHHHTSCEECEEGGGGTCSSSSEEEEECS-SSCHHHHHHHHHHHHH
T ss_pred hhhcCCCchhHHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEEe-cCCHHHHHHHHHHHHH
Confidence 31 45788999876 99886431 468999998 6899999999999873
|
| >1yaa_A Aspartate aminotransferase; HET: PLP; 2.05A {Saccharomyces cerevisiae} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.61 E-value=3.4e-15 Score=172.17 Aligned_cols=269 Identities=10% Similarity=0.032 Sum_probs=167.6
Q ss_pred cCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcC-CC-CCCCCHHHHHHHHHhcCCCE
Q 001989 654 PNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGT-DA-KGNINIEELRKAAEANRDNL 731 (985)
Q Consensus 654 ~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~-d~-~g~iD~e~L~~~i~~~~~~t 731 (985)
+++|++|+..+...++.+ .++++|+++.+.|..+...++..|++++.+|. ++ ++.+|+++|++++++.++.+
T Consensus 104 t~g~~~a~~~~~~~~~~~------~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~ 177 (412)
T 1yaa_A 104 SLSGTGALHISAKFFSKF------FPDKLVYLSKPTWANHMAIFENQGLKTATYPYWANETKSLDLNGFLNAIQKAPEGS 177 (412)
T ss_dssp EEHHHHHHHHHHHHHHHH------CTTCCEEEEESCCTTHHHHHHTTTCCEEEEECEETTTTEECHHHHHHHHHHSCTTC
T ss_pred ccchHhHHHHHHHHHHHh------CCCCEEEEeCCCCccHHHHHHHcCceEEEEeeecCCCCccCHHHHHHHHHhCCCCC
Confidence 556666665443223322 36788999888888887778889999999998 43 57899999999997432245
Q ss_pred EEEEEEcCC-Cccccc--cCHHHHHHHHHHcCCEEEEEccccc-cccC-------CCCCCccCC----cEEEeCCccccc
Q 001989 732 STLMVTYPS-THGVYE--EGIDEICKIIHDNGGQVYMDGANMN-AQVG-------LTSPGYIGA----DVCHLNLHKTFC 796 (985)
Q Consensus 732 ~~Vvv~~pn-~~G~i~--~di~eI~~la~~~galliVD~a~~~-~~~~-------l~~pg~~g~----Di~~~s~hK~l~ 796 (985)
+++++++|+ ++|.+. .++++|+++|+++|+++++|+++.. ..++ +......+. ++++.|++|+|+
T Consensus 178 ~~~~~~~p~nPtG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~ 257 (412)
T 1yaa_A 178 IFVLHSCAHNPTGLDPTSEQWVQIVDAIASKNHIALFDTAYQGFATGDLDKDAYAVRLGVEKLSTVSPVFVCQSFAKNAG 257 (412)
T ss_dssp EEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTSSSCHHHHTHHHHHHHHHTTTTCCEEEEEECTTTSC
T ss_pred EEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecccccccCCcccchhHHHHHHHhcCCCCcceEEEeccCCCCC
Confidence 666668884 699885 1577899999999999999998731 1111 000011233 477889999885
Q ss_pred ccCCCCCCceEEEE--E-----ccc----ccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhc-
Q 001989 797 IPHGGGGPGMGPIG--V-----KKH----LAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMG- 864 (985)
Q Consensus 797 ~p~g~GGPg~G~i~--~-----~~~----l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg- 864 (985)
. .|.++|+++ + +++ +...+.... + ..+.+. + .....++.++|....
T Consensus 258 ~----~GlriG~~~~~~~~~~~~~~~~~~l~~~l~~~~-----------~-~~~~~~--~----~~~~~a~~~~l~~~~~ 315 (412)
T 1yaa_A 258 M----YGERVGCFHLALTKQAQNKTIKPAVTSQLAKII-----------R-SEVSNP--P----AYGAKIVAKLLETPEL 315 (412)
T ss_dssp C----GGGCEEEEEEECCSCTTHHHHHHHHHHHHHHHH-----------H-TTTSSC--C----HHHHHHHHHHHHSHHH
T ss_pred C----cCCcceEEEEEecCCCCCHHHHHHHHHHHHHHH-----------h-hccCCC--C----hHHHHHHHHHhCCHHH
Confidence 2 245689998 6 444 443322100 0 001111 1 111222223333221
Q ss_pred ----HHHHHHHHHHHHHHHHHHHHHhhc-c----CCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccC
Q 001989 865 ----SKGLTEASKIAILNANYMAKRLEK-H----YPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGP 935 (985)
Q Consensus 865 ----~eGl~~~~~~~~~~a~~l~~~L~~-g----~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~ 935 (985)
.+.+.+..++..++++++.+.|++ + +.+. . +.+..+ +.+ +.+...+.+.|.++||.+.
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~-~-~~~~~~--~~~---------~~~~~~~~~~l~~~gi~v~ 382 (412)
T 1yaa_A 316 TEQWHKDMVTMSSRITKMRHALRDHLVKLGTPGNWDHI-V-NQCGMF--SFT---------GLTPQMVKRLEETHAVYLV 382 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCTHH-H-HCCSSE--EEC---------CCCHHHHHHHHHHHCEECC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCeeee-c-cCceEE--Eee---------CCCHHHHHHHHHhCCEEec
Confidence 235666777788889999999986 3 3332 1 112222 111 2345667555667899875
Q ss_pred CCCCCCCCEEEEeccCCCCHHHHHHHHccCChhHHHHh
Q 001989 936 TMSWPVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHR 973 (985)
Q Consensus 936 ~~~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~ 973 (985)
. .+||+++. .+++|+++ +++.|+++++.
T Consensus 383 ~-------~~Ris~~~-~~~~~i~~--~~~~l~~~~~~ 410 (412)
T 1yaa_A 383 A-------SGRASIAG-LNQGNVEY--VAKAIDEVVRF 410 (412)
T ss_dssp T-------TSEEEGGG-CCTTTHHH--HHHHHHHHHHH
T ss_pred c-------CcEEEEcc-CCHhHHHH--HHHHHHHHHHh
Confidence 3 57999974 58999999 77888887764
|
| >3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491} | Back alignment and structure |
|---|
Probab=99.61 E-value=1.9e-13 Score=156.39 Aligned_cols=305 Identities=13% Similarity=0.047 Sum_probs=192.1
Q ss_pred CCCCCCCCcHHHHHHHHhCCccccccCCChhhHhhhHHHHHHHHHHHHHHhcCC---CCc-ceeeccchHHHHHHHHHHh
Q 001989 173 MGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGL---PMS-NASLLDEGTAAAEAMAMCN 248 (985)
Q Consensus 173 ~g~y~~~~p~~v~~~i~~~~~~~t~~~pyq~e~sqg~l~~i~e~q~~ia~L~g~---~~~-~~sl~~~~ta~~ea~~~a~ 248 (985)
.|..+...|+.+.+++.+...-...|.+. +|..+...++.+.+.+..|. ++. ++.+++|++.+++.++.++
T Consensus 37 ~~~~~~~~~~~v~~a~~~~~~~~~~y~~~-----~g~~~lr~~la~~l~~~~g~~~~~~~~~i~~t~g~~~al~~~~~~~ 111 (396)
T 3jtx_A 37 IGEPKHPTPKVITDALTASLHELEKYPLT-----AGLPELRQACANWLKRRYDGLTVDADNEILPVLGSREALFSFVQTV 111 (396)
T ss_dssp CCSCCSCCCHHHHHHHHHTGGGGGSCCCT-----TCCHHHHHHHHHHHHHHTTTCCCCTTTSEEEESSHHHHHHHHHHHH
T ss_pred CcCCCCCCCHHHHHHHHHHhhhccCCCCC-----CCcHHHHHHHHHHHHHhcCCCCCCCCCeEEEcCCcHHHHHHHHHHH
Confidence 34334446777765665543334455432 22223333344455555574 466 8999999998888777654
Q ss_pred hhhcCCC-----CEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc---------hhhhc-cCCCEeEEEEEcC-CCCeee
Q 001989 249 NIQKGKK-----KTFIIASNCHPQTIDICITRADGFDIKVVVSDL---------KDIDY-KSGDVCGVLVQYP-GTEGEV 312 (985)
Q Consensus 249 ~~~~~~g-----~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~---------~~l~~-l~~~t~~V~v~~p-n~~G~v 312 (985)
. ++| |+|+++...|+.+...++. .|.+++.++. ++|++ +.+++++|++++| |.+|.+
T Consensus 112 ~---~~g~~~~~d~vl~~~p~~~~~~~~~~~----~g~~~~~v~~~~~g~~~d~~~l~~~~~~~~~~v~l~~p~nptG~~ 184 (396)
T 3jtx_A 112 L---NPVSDGIKPAIVSPNPFYQIYEGATLL----GGGEIHFANCPAPSFNPDWRSISEEVWKRTKLVFVCSPNNPSGSV 184 (396)
T ss_dssp C---CC---CCCCEEEEEESCCHHHHHHHHH----TTCEEEEEECCTTTCCCCGGGSCHHHHHTEEEEEEESSCTTTCCC
T ss_pred h---CCCCccCCCEEEEcCCCcHhHHHHHHH----cCCEEEEeecCCCCCccCHHHHHHhhccCcEEEEEECCCCCCCCc
Confidence 2 254 7999999999998887653 5778877754 34444 5568999999998 789998
Q ss_pred cc---HHHHHHHHHhCCcEEEEEecCccccCCC--CC-C----------cccceEEEecC-ccccccCCCCCCcEEEEEE
Q 001989 313 LD---YGDFIKNAHANGVKVVMATDLLALTILK--PP-G----------ELGADIVVGSA-QRFGVPMGYGGPHAAFLAT 375 (985)
Q Consensus 313 ~d---i~~I~~~a~~~galliV~a~~~~lg~l~--~~-~----------~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~ 375 (985)
.+ +++|+++|+++|+++++|. ..+..... .+ . +.+.++++.|. |.|+.| |-.+|++..
T Consensus 185 ~~~~~l~~i~~~~~~~~~~li~De-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~----G~r~G~~~~ 259 (396)
T 3jtx_A 185 LDLDGWKEVFDLQDKYGFIIASDE-CYSEIYFDGNKPLGCLQAAAQLGRSRQKLLMFTSLSKRSNVP----GLRSGFVAG 259 (396)
T ss_dssp CCHHHHHHHHHHHHHHCCEEEEEC-TTTTCCSTTCCCCCHHHHHHHTTCCCTTEEEEEESTTTSSCG----GGCCEEEEE
T ss_pred CCHHHHHHHHHHHHHcCCEEEEEc-cccccccCCCCCchHHhhhhhcccccCcEEEEeccccccCCc----ccceEEEEe
Confidence 75 4559999999999999953 33321111 11 1 36788999987 767543 334689988
Q ss_pred chhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHH
Q 001989 376 SQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAG 455 (985)
Q Consensus 376 ~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~ 455 (985)
++++++.+... .+ ....+.|. ....+..++ +. ..+.++++.++..++.+
T Consensus 260 ~~~~~~~~~~~----------------------~~--~~~~~~~~---~~~~a~~~~--l~--~~~~~~~~~~~~~~~~~ 308 (396)
T 3jtx_A 260 DAELLKNFLLY----------------------RT--YHGSAMSI---PVQRASIAA--WD--DEQHVIDNRRLYQEKFE 308 (396)
T ss_dssp CHHHHHHHHHH----------------------HH--HHTCCCCH---HHHHHHHHH--HH--CCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHH----------------------Hh--hcccCCCH---HHHHHHHHH--hC--CHHHHHHHHHHHHHHHH
Confidence 88877655100 00 00011111 112222222 12 35677888899999999
Q ss_pred HHHHHHhcCCCeEEcCCCCcceEEEecCC--HHHHHHHHH-HcCceeeee------------cCCeEEEEeccCCCHHHH
Q 001989 456 TFALGLKKLGTVEVQGLPFFDTVKVKCAD--AHAIASAAY-KIEMNLRVV------------DSNTVTASFDETTTLEDV 520 (985)
Q Consensus 456 ~l~~~L~~~g~~~~~~~~~~~~~~~~~~~--~~~v~~~L~-~~GI~~~~~------------~~~~lris~t~~~t~edI 520 (985)
++.+.|++. +.+.......-+.+.++. ..++.++|. ++||.+... ..+.+|++++. ++++|
T Consensus 309 ~l~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~~~~~~iRis~~~--~~~~i 384 (396)
T 3jtx_A 309 RVIPILQQV--FDVKLPDASFYIWLKVPDGDDLAFARNLWQKAAIQVLPGRFLARDTEQGNPGEGYVRIALVA--DVATC 384 (396)
T ss_dssp HHHHHHTTT--SCCCCCSSSSEEEEECTTSCHHHHHHHHHHHHCEECEEGGGGCCCCTTCCTTTTEEEEECCS--CHHHH
T ss_pred HHHHHHHhc--CCccCCCeeEEEEEECCCCCHHHHHHHHHHHCCEEEeCChHhCCcccccCCCCCeEEEEEcC--CHHHH
Confidence 999999875 222221111123455553 788888885 569987431 24789999875 99999
Q ss_pred HHHHHHHhC
Q 001989 521 DKLFIVFAG 529 (985)
Q Consensus 521 d~li~aL~~ 529 (985)
+++++.|.+
T Consensus 385 ~~~l~~l~~ 393 (396)
T 3jtx_A 385 VKAAEDIVS 393 (396)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998863
|
| >3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=99.61 E-value=7e-14 Score=160.19 Aligned_cols=272 Identities=13% Similarity=0.133 Sum_probs=175.9
Q ss_pred HHHHHHHHhcC--CCCcceeeccchHHHHHHHHHHhhhhcCCC-CEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc---
Q 001989 215 NFQTMIADLTG--LPMSNASLLDEGTAAAEAMAMCNNIQKGKK-KTFIIASNCHPQTIDICITRADGFDIKVVVSDL--- 288 (985)
Q Consensus 215 e~q~~ia~L~g--~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g-~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~--- 288 (985)
++.+.+.+..| .++.++.+++|+|.+++.++.++ . ++| |+|+++...|+.+...++. .|.+++.++.
T Consensus 84 ~la~~l~~~~g~~~~~~~i~~~~g~~~al~~~~~~l-~--~~g~d~vl~~~p~~~~~~~~~~~----~g~~~~~v~~~~~ 156 (398)
T 3ele_A 84 AIAEFLNNTHGTHFNADNLYMTMGAAASLSICFRAL-T--SDAYDEFITIAPYFPEYKVFVNA----AGARLVEVPADTE 156 (398)
T ss_dssp HHHHHHHHHHCCCCCGGGEEEESSHHHHHHHHHHHH-C--CSTTCEEEEESSCCTHHHHHHHH----TTCEEEEECCCTT
T ss_pred HHHHHHHHHhCCCCChHHEEEccCHHHHHHHHHHHH-c--CCCCCEEEEeCCCchhhHHHHHH----cCCEEEEEecCCc
Confidence 33344555556 56778999999998887776654 2 378 9999999999998887753 5888888764
Q ss_pred ------hhhhc-cCCCEeEEEEEcC-CCCeeecc---HHHHHHHHHh------CCcEEEEEecCccccCC----CC--CC
Q 001989 289 ------KDIDY-KSGDVCGVLVQYP-GTEGEVLD---YGDFIKNAHA------NGVKVVMATDLLALTIL----KP--PG 345 (985)
Q Consensus 289 ------~~l~~-l~~~t~~V~v~~p-n~~G~v~d---i~~I~~~a~~------~galliV~a~~~~lg~l----~~--~~ 345 (985)
++|++ +++++++|++++| |.+|.+.+ +++|+++|++ +|+++++|. ..+.... .+ ..
T Consensus 157 ~~~~d~~~l~~~l~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~~~~~~~li~De-~~~~~~~~~~~~~~~~~ 235 (398)
T 3ele_A 157 HFQIDFDALEERINAHTRGVIINSPNNPSGTVYSEETIKKLSDLLEKKSKEIGRPIFIIADE-PYREIVYDGIKVPFVTK 235 (398)
T ss_dssp TSSCCHHHHHHTCCTTEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHHHHHTSCCEEEEEC-TTTTCBCTTCCCCCGGG
T ss_pred CCcCCHHHHHHHhCcCCCEEEEcCCCCCCCCCCCHHHHHHHHHHHHhhhhccCCCeEEEEec-cccccccCCCCcCChHh
Confidence 34555 7788999999888 78999877 7778899999 999999953 3332111 11 13
Q ss_pred cccceEEEecC-ccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchh
Q 001989 346 ELGADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQ 424 (985)
Q Consensus 346 ~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~ 424 (985)
.++.+++++|. |.|+. .|..+|++++++++.+... +.. .-+...+..++ .+.+
T Consensus 236 ~~~~~i~~~s~sK~~~~----~G~r~G~~~~~~~~~~~~~--~~~-----------------~~~~~~~~~~~--~~~~- 289 (398)
T 3ele_A 236 YYDNTLVCYSYSKSLSL----PGERIGYVLVPDEVYDKAE--LYA-----------------AVCGAGRALGY--VCAP- 289 (398)
T ss_dssp TCSSEEEEEESTTTSSC----TTTCCEEEECCTTSTTHHH--HHH-----------------HHHHHHHHTTC--CCSC-
T ss_pred hcCCeEEEEehhhcCCC----ccceeEEEEEcchhhhHHH--HHH-----------------HHHHHhhhccc--cCCC-
Confidence 45678999887 87753 3445799988776432110 000 00000011111 1111
Q ss_pred HHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCCCcceEEEecCC--HHHHHHHHHHcCceeeee
Q 001989 425 ALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDTVKVKCAD--AHAIASAAYKIEMNLRVV 502 (985)
Q Consensus 425 ~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~--~~~v~~~L~~~GI~~~~~ 502 (985)
.+ +..++. ..+.... ..++..++.+++.+.|+++| +++..+....-+.+..++ +.++.+.|.++||.+...
T Consensus 290 ~~-~~~a~~--~~l~~~~---~~~~~~~~~~~l~~~L~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g 362 (398)
T 3ele_A 290 SL-FQKMIV--KCQGATG---DINAYKENRDLLYEGLTRIG-YHCFKPDGAFYMFVKALEDDSNAFCEKAKEEDVLIVAA 362 (398)
T ss_dssp HH-HHHHHT--TCTTCCC---CHHHHHHHHHHHHHHHHHHT-CCEECCSBSSEEEEECSSSCHHHHHHHHHTTTEECEES
T ss_pred HH-HHHHHH--HHhcCHH---HHHHHHHHHHHHHHHHHHcC-CeecCCCeeEEEEEEcCCCCHHHHHHHHHHCCEEEeCc
Confidence 11 111211 1222211 34566778889999998886 776532211123455553 888999999999988653
Q ss_pred c----CCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 503 D----SNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 503 ~----~~~lris~t~~~t~edId~li~aL~~ 529 (985)
. ++.+|++++ +++++|+++++.|.+
T Consensus 363 ~~~~~~~~iRis~~--~~~e~i~~~l~~l~~ 391 (398)
T 3ele_A 363 DGFGCPGWVRISYC--VDREMIKHSMPAFEK 391 (398)
T ss_dssp GGGTCTTEEEEECC--SCHHHHHHHHHHHHH
T ss_pred cccCCCCeEEEEec--CCHHHHHHHHHHHHH
Confidence 1 589999996 799999999999874
|
| >1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism, pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A {Trypanosoma cruzi} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.60 E-value=6.2e-14 Score=161.71 Aligned_cols=275 Identities=9% Similarity=0.041 Sum_probs=179.2
Q ss_pred HHHHHHHHhcC------------CCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeE
Q 001989 215 NFQTMIADLTG------------LPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIK 282 (985)
Q Consensus 215 e~q~~ia~L~g------------~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~ 282 (985)
++++.+|++++ .++.++.+++|+|.+++.++.++ . ++||+|+++...|+++...++. .|++
T Consensus 79 ~lr~~la~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~al~~~~~~l-~--~~gd~vl~~~p~y~~~~~~~~~----~g~~ 151 (416)
T 1bw0_A 79 EAREAVATWWRNSFVHKEELKSTIVKDNVVLCSGGSHGILMAITAI-C--DAGDYALVPQPGFPHYETVCKA----YGIG 151 (416)
T ss_dssp HHHHHHHHHHHHHHCCSTTTGGGCCGGGEEEESHHHHHHHHHHHHH-C--CTTCEEEEEESCCTHHHHHHHH----TTCE
T ss_pred HHHHHHHHHHHhhhcccccCCCCCCcceEEEeCChHHHHHHHHHHh-C--CCCCEEEEcCCCcHhHHHHHHH----cCcE
Confidence 46677888877 66778999999998887776654 2 3789999999999998887653 5777
Q ss_pred EEEeCc----------hhhhc-cCCCEeEEEEEcC-CCCeeecc---HHHHHHHHHhCCcEEEEEecCccc----cC---
Q 001989 283 VVVSDL----------KDIDY-KSGDVCGVLVQYP-GTEGEVLD---YGDFIKNAHANGVKVVMATDLLAL----TI--- 340 (985)
Q Consensus 283 v~~v~~----------~~l~~-l~~~t~~V~v~~p-n~~G~v~d---i~~I~~~a~~~galliV~a~~~~l----g~--- 340 (985)
++.++. ++|++ +++++++|++.+| |.+|.+.| +++|+++|+++|+++++|. ..+. |-
T Consensus 152 ~~~v~~~~~~~~~~d~~~l~~~l~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De-~~~~~~~~g~~~~ 230 (416)
T 1bw0_A 152 MHFYNCRPENDWEADLDEIRRLKDDKTKLLIVTNPSNPCGSNFSRKHVEDIVRLAEELRLPLFSDE-IYAGMVFKGKDPN 230 (416)
T ss_dssp EEEEEEEGGGTTEECHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEEC-TTTTCBCCSSCTT
T ss_pred EEEeecCcccCCCCCHHHHHHHhccCCeEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCCEEEEEc-cccccccCCCCCC
Confidence 766543 34555 7788999999988 67999988 9999999999999999953 2222 11
Q ss_pred --CCCCCcc---cceEEEecC-ccccccCCCCCCcEEEEEEchh--hHhcCCCceeeeeecCCCCcceeeeccccccccc
Q 001989 341 --LKPPGEL---GADIVVGSA-QRFGVPMGYGGPHAAFLATSQE--YKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIR 412 (985)
Q Consensus 341 --l~~~~~~---GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~--~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~ir 412 (985)
..+...+ +-+++++|. |.|+.| |-.+|+++++++ +.+.+-.. + + ...
T Consensus 231 ~~~~~~~~~~~~~~~i~~~s~sK~~~~~----Glr~G~~~~~~~~~~~~~~~~~-----------------~--~--~~~ 285 (416)
T 1bw0_A 231 ATFTSVADFETTVPRVILGGTAKNLVVP----GWRLGWLLYVDPHGNGPSFLEG-----------------L--K--RVG 285 (416)
T ss_dssp CCCCCTTSSCCSCCEEEEEESTTTTSCG----GGCCEEEEEECTTCSCHHHHHH-----------------H--H--HHH
T ss_pred CCccCHHHccCCCcEEEEecchhhCCCC----CceEEEEEeeCchhhHHHHHHH-----------------H--H--HHh
Confidence 1111222 235777776 776532 223688887653 32221000 0 0 000
Q ss_pred ccccCCCccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCCCcceEEEecC--------C
Q 001989 413 RDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDTVKVKCA--------D 484 (985)
Q Consensus 413 re~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~~~~~~~~~~~--------~ 484 (985)
....+.|. ....++.+ .+.....++++++.++..++.+++.+.|+++.++++..+....-+.+..+ +
T Consensus 286 ~~~~~~~~---~~~~a~~~--~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (416)
T 1bw0_A 286 MLVCGPCT---VVQAALGE--ALLNTPQEHLDQIVAKIEESAMYLYNHIGECIGLAPTMPRGAMYLMSRIDLEKYRDIKT 360 (416)
T ss_dssp HHHTCSCH---HHHHHHHH--HHHSSCHHHHHHHHHHHHHHHHHHHHHHTTSTTEEECCCCBTTEEEEEECGGGBSSCCS
T ss_pred ccccCCCc---HHHHHHHH--HHhcccHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCCeeEEEEEeCCHHHcCCCCC
Confidence 00111111 12222222 23434466788999999999999999999983388763221112223332 2
Q ss_pred HHHHHHHHH-HcCceeeee----cCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 485 AHAIASAAY-KIEMNLRVV----DSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 485 ~~~v~~~L~-~~GI~~~~~----~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
..++.+.|. ++||.+... .++.+|++++ +++++|++.++.|.+
T Consensus 361 ~~~~~~~l~~~~gi~v~~g~~f~~~~~iRis~~--~~~e~l~~~l~~l~~ 408 (416)
T 1bw0_A 361 DVEFFEKLLEEENVQVLPGTIFHAPGFTRLTTT--RPVEVYREAVERIKA 408 (416)
T ss_dssp HHHHHHHHHHHHCEECEEGGGGTCTTEEEEECC--SCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCEEEecccccCCCCeEEEEec--CCHHHHHHHHHHHHH
Confidence 778888884 789988643 1578999995 689999999988863
|
| >3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5' phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A {Chlamydomonas reinhardtii} | Back alignment and structure |
|---|
Probab=99.60 E-value=5.7e-14 Score=163.92 Aligned_cols=278 Identities=14% Similarity=0.119 Sum_probs=178.9
Q ss_pred HHHHHHHHHhc----CCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeE-------
Q 001989 214 LNFQTMIADLT----GLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIK------- 282 (985)
Q Consensus 214 ~e~q~~ia~L~----g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~------- 282 (985)
.++++.+|+++ +.++.++.+++|++++++.+ .++ . ++||+|+++...|+++...++.. |.+
T Consensus 114 ~~lr~~ia~~~~~g~~~~~~~i~~t~G~~~al~~~-~~l-~--~~gd~Vl~~~p~~~~~~~~~~~~----g~~g~~~~~~ 185 (449)
T 3qgu_A 114 GALREAVASTFYGHAGRAADEIFISDGSKCDIARI-QMM-F--GSKPTVAVQDPSYPVYVDTSVMM----GMTGDHNGTG 185 (449)
T ss_dssp HHHHHHHHHHHHTTTTCCGGGEEEESCHHHHHHHH-HHH-H--CSSSCEEEEESCCTHHHHHHHHH----TCSCCBCSSS
T ss_pred HHHHHHHHHHHHcCCCCCHHHEEEccCHHHHHHHH-HHH-h--CCCCEEEEcCCCChhHHHHHHHc----CCcccccccc
Confidence 45677888887 67778899999999888776 443 2 38899999999999999887653 433
Q ss_pred ---EEEeCch---hhhc-cC--CCEeEEEEEcC-CCCeeec---cHHHHHHHHHhCCcEEEEEecCccccCCC-----C-
Q 001989 283 ---VVVSDLK---DIDY-KS--GDVCGVLVQYP-GTEGEVL---DYGDFIKNAHANGVKVVMATDLLALTILK-----P- 343 (985)
Q Consensus 283 ---v~~v~~~---~l~~-l~--~~t~~V~v~~p-n~~G~v~---di~~I~~~a~~~galliV~a~~~~lg~l~-----~- 343 (985)
++.++.+ .+.. +. +++++|++++| |.+|.+. ++++|+++|+++|+++++|. ..+..... .
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~p~NPtG~~~~~~~l~~l~~l~~~~~~~li~De-a~~~~~~~~~~~~~~ 264 (449)
T 3qgu_A 186 FDGIEYMVCNPDNHFFPDLSKAKRTDIIFFCSPNNPTGAAATRAQLTELVNFARKNGSILVYDA-AYALYISNPDCPKTI 264 (449)
T ss_dssp BTTEEEEECCGGGTTCCCGGGCCCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEC-TTGGGCCCTTSCSSG
T ss_pred cceeEEEecccccCCcCChhHcCCCCEEEEeCCCCCCCCcCCHHHHHHHHHHHHHCCcEEEEEc-chHhhhcCCCCCCCH
Confidence 5555442 2222 21 57899999988 7799886 48889999999999999953 33321111 1
Q ss_pred ---CCcccceEEEecC-ccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCC
Q 001989 344 ---PGELGADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSN 419 (985)
Q Consensus 344 ---~~~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsn 419 (985)
+...+.|++++|. |.|+. +|..+|++++++++++.. ... + +.+-.+....+.+
T Consensus 265 ~~~~~~~~~~i~~~s~sK~~g~----~G~r~G~~~~~~~~~~~~------------~~~-----~--~~~~~~~~~~~~~ 321 (449)
T 3qgu_A 265 YEIPGADEVAIETCSFSKYAGF----TGVRLGWTVVPKALKYAN------------GEP-----V--HADWNRVMTTCFN 321 (449)
T ss_dssp GGSTTGGGTEEEEEECSGGGTC----TTCCCEEEECCTTCBCTT------------SCB-----H--HHHHHHHHHHSCC
T ss_pred hhccCCCCcEEEEecchhhcCC----ccceeEEEecCHHHHhhh------------hhh-----H--HHHHHHHhhcccC
Confidence 1224678999997 88853 345679998877654320 000 0 0000001111111
Q ss_pred ccchhHHHHHHHHH-HHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCCCcceEEEecCC--HHHHHHHHHHc-
Q 001989 420 ICTAQALLANMAAM-YAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDTVKVKCAD--AHAIASAAYKI- 495 (985)
Q Consensus 420 i~t~~~l~a~~aa~-~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~--~~~v~~~L~~~- 495 (985)
+. ...+..++. .+...+.+.++++.++..++.+++++.|+++| +++..+....-+.+.+++ ..++.+.|.++
T Consensus 322 -~~--~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 397 (449)
T 3qgu_A 322 -GA--SNIVQAGGLACLQPEGLKEMNAMIKFYKENAQILKTTFTEMG-FSVYGGDDAPYIWVGFPGKPSWDVFAEILERC 397 (449)
T ss_dssp -CC--CHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CCEEESSSSSEEEEECTTSCHHHHHHHHHHHH
T ss_pred -CC--CHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHCC-CeeeCCCCeeEEEEECCCCCHHHHHHHHHHHC
Confidence 11 111222222 11111224577888899999999999999987 776532212223445543 78888888875
Q ss_pred Cceeeee------cCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 496 EMNLRVV------DSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 496 GI~~~~~------~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
||.+... ..+.+|+++. .|++||+++++.|.+
T Consensus 398 gI~v~pg~~f~~~~~~~iRis~~--~~~e~i~~~l~~l~~ 435 (449)
T 3qgu_A 398 NIVTTPGSGYGPAGEGFVRASAF--GSRENILEAVRRFKE 435 (449)
T ss_dssp CEECEEGGGGCGGGTTEEEEECC--SCHHHHHHHHHHHHH
T ss_pred CEEEecchHhCCCCCCeEEEEec--CCHHHHHHHHHHHHH
Confidence 9987542 2588999954 599999999998874
|
| >2a7v_A Serine hydroxymethyltransferase; structural genomics, structural genomics consortium, SGC; 2.04A {Homo sapiens} PDB: 3ou5_A | Back alignment and structure |
|---|
Probab=99.60 E-value=2.1e-14 Score=168.58 Aligned_cols=285 Identities=10% Similarity=0.030 Sum_probs=166.7
Q ss_pred HHHHHHHHhcCCCCcc--ee-eccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHH--------HHHHhhcCCCeEE
Q 001989 215 NFQTMIADLTGLPMSN--AS-LLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTID--------ICITRADGFDIKV 283 (985)
Q Consensus 215 e~q~~ia~L~g~~~~~--~s-l~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~--------~~~~~a~~~gi~v 283 (985)
++++.+++++|++.+. +. +..+||.+..++++++ . ++||+|++++..|.+... .+. ++ +..+++
T Consensus 104 ~a~~~~a~l~g~~~~~~~~~v~~~sGt~An~~al~al-~--~pGD~Vl~~~~~h~g~l~h~~~~~~~~i~-~~-g~~~~~ 178 (490)
T 2a7v_A 104 LCQRRALEAFDLDPAQWGVNVQPYSGSPANLAVYTAL-L--QPHDRIMGLDLPDGGHLTHGYMSDVKRIS-AT-SIFFES 178 (490)
T ss_dssp HHHHHHHHHTTCCTTTEEEECCCSSHHHHHHHHHHHH-C--CSCEECCC-------------------------------
T ss_pred HHHHHHHHHcCCCcccCceEEeCCchHHHHHHHHHHH-c--CCCCEecccCccccccccchhhhcchhHH-Hc-CCeEEE
Confidence 4569999999999752 22 3347888877777765 2 389999999988865432 111 11 112222
Q ss_pred EE---------eCchhhhc-cC-CCEeEEEEEcCCCCeeeccHHHHHHHHHhCCcEEEEEecCcccc-----CCCCCCcc
Q 001989 284 VV---------SDLKDIDY-KS-GDVCGVLVQYPGTEGEVLDYGDFIKNAHANGVKVVMATDLLALT-----ILKPPGEL 347 (985)
Q Consensus 284 ~~---------v~~~~l~~-l~-~~t~~V~v~~pn~~G~v~di~~I~~~a~~~galliV~a~~~~lg-----~l~~~~~~ 347 (985)
+. +|+++|++ +. .++++|++..|+ +|.+.|+++|+++||++|++++||. .+..| ....+-.
T Consensus 179 ~~~~vd~~~~~iD~d~le~~l~~~~~klIi~~~s~-~~~~~dl~~i~~ia~~~g~~livD~-Ah~~glv~~g~~~~~~~- 255 (490)
T 2a7v_A 179 MPYKLNPKTGLIDYNQLALTARLFRPRLIIAGTSA-YARLIDYARMREVCDEVKAHLLADM-AHISGLVAAKVIPSPFK- 255 (490)
T ss_dssp --CCBCTTTCSBCHHHHHHHHHHHCCSEEEECCSS-CCSCCCHHHHHHHHHHTTCEEEEEC-GGGHHHHHTTSSCCGGG-
T ss_pred EecccccccCCcCHHHHHHHHhhcCCcEEEEcCCC-CCCcccHHHHHHHHHHcCCEEEEcc-ccccccccCCcCCCCCC-
Confidence 22 34456766 53 357777766554 4677899999999999999999953 33323 2222322
Q ss_pred cceEEEecC-ccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccc--cccCCCccchh
Q 001989 348 GADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRR--DKATSNICTAQ 424 (985)
Q Consensus 348 GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irr--e~atsni~t~~ 424 (985)
++|++++|+ |+|++ |..|++++++++.+.-+. .|...+. .+ .+.+++ ..++..-..+.
T Consensus 256 ~aDiv~~S~hK~l~G------p~GG~i~~~~~~~~~~~~---------~~~~~~~-~l---~~~i~~~~~~g~qggp~~~ 316 (490)
T 2a7v_A 256 HADIVTTTTHKTLRG------ARSGLIFYRKGVKAVDPK---------TGREIPY-TF---EDRINFAVFPSLQGGPHNH 316 (490)
T ss_dssp TCSEEEEESSGGGCS------CSCEEEEEECSEEEEETT---------TEEEEEC-CC---HHHHHHHHTTTTCCSCCHH
T ss_pred CCCEEEECCcccCcc------ccchheeeccchhccccc---------ccchhhH-HH---HHHHHHHhcccCCCCchHH
Confidence 799999998 76754 445899887653210000 0000000 11 111111 11221111223
Q ss_pred HHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcC-CCCcceEEEecC--C--HHHHHHHHHHcCcee
Q 001989 425 ALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQG-LPFFDTVKVKCA--D--AHAIASAAYKIEMNL 499 (985)
Q Consensus 425 ~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~-~~~~~~~~~~~~--~--~~~v~~~L~~~GI~~ 499 (985)
.+.++.+++ .....+++++..++..+++++|++.|.+.| ++++. ....+.+.+.+. + +.++.+.|.++||.+
T Consensus 317 ~iaAla~Al--~~~~~~~~~~~~~~~~~na~~L~~~L~~~G-~~v~~~~t~t~lv~vdl~~~g~~~~~~~~~L~~~GI~v 393 (490)
T 2a7v_A 317 AIAAVAVAL--KQACTPMFREYSLQVLKNARAMADALLERG-YSLVSGGTDNHLVLVDLRPKGLDGARAERVLELVSITA 393 (490)
T ss_dssp HHHHHHHHH--HHHHSHHHHHHHHHHHHHHHHHHHHHHHTT-CEEGGGSCSSSEEEEECTTTTCCHHHHHHHHHHTTEEC
T ss_pred HHHHHHHHH--HHHhhhhHHHHHHHHHHHHHHHHHHHHHcC-cEEecCCCCCeEEEEEeCCCCCCHHHHHHHHHhCCeEE
Confidence 444444443 222234568888999999999999999997 99874 222233445543 3 778999999999987
Q ss_pred ee---------ecCCeEEEEecc----CCCHHHHHHHHHHHhC
Q 001989 500 RV---------VDSNTVTASFDE----TTTLEDVDKLFIVFAG 529 (985)
Q Consensus 500 ~~---------~~~~~lris~t~----~~t~edId~li~aL~~ 529 (985)
.. ..++.+|++... ..+++|+++++++|..
T Consensus 394 ~~~~~p~d~~p~~~~~iRig~~a~t~~g~~~~d~~~~~~~i~~ 436 (490)
T 2a7v_A 394 NKNTCPGDRSAITPGGLRLGAPALTSRQFREDDFRRVVDFIDE 436 (490)
T ss_dssp EEECCTTCCCSSSCSEEEEESHHHHHTTCCHHHHHHHHHHHHH
T ss_pred ecCccCCCCCCCCCCceEecccccccCCCCHHHHHHHHHHHHH
Confidence 53 125789997754 4689999999999874
|
| >3asa_A LL-diaminopimelate aminotransferase; PLP dependent aminotransferase; 2.05A {Chlamydia trachomatis} PDB: 3asb_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=4.6e-15 Score=170.52 Aligned_cols=295 Identities=13% Similarity=0.072 Sum_probs=170.6
Q ss_pred HHHHHHHHHH--hC-CCccce-ecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcE-EEEEcC
Q 001989 635 NNLGEWLCTI--TG-FDSFSL-QPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMK-IVSVGT 709 (985)
Q Consensus 635 ~e~~~~la~l--~G-~~~~~~-~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~-vv~v~~ 709 (985)
.++++.++++ .| .+...+ +.++++++... + ++ .. .++++|+++.+.|..+...++..|++ ++.+|.
T Consensus 78 ~~lr~~la~~l~~g~~~~~~v~~~~G~~~al~~-~--~~-~~-----~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~ 148 (400)
T 3asa_A 78 PALRQKLSEDFYRGFVDAKEIFISDGAKVDLFR-L--LS-FF-----GPNQTVAIQDPSYPAYLDIARLTGAKEIIALPC 148 (400)
T ss_dssp HHHHHHHHHTTSTTSSCGGGEEEESCHHHHHHH-H--HH-HH-----CSSCEEEEEESCCHHHHHHHHHTTCSEEEEEEC
T ss_pred HHHHHHHHHHHHcCCCCHHHEEEccChHHHHHH-H--HH-Hc-----CCCCEEEECCCCcHHHHHHHHHcCCcceEeccc
Confidence 3677788887 57 555444 44555555532 2 22 21 36789999887776666667788998 999998
Q ss_pred CCCCCCCHHHHHHHHHhcCCCEEEEEEEcCC-Ccccccc--CHHHHHHHHHHcCCEEEEEcccc-ccccCC--CCCCcc-
Q 001989 710 DAKGNINIEELRKAAEANRDNLSTLMVTYPS-THGVYEE--GIDEICKIIHDNGGQVYMDGANM-NAQVGL--TSPGYI- 782 (985)
Q Consensus 710 d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~pn-~~G~i~~--di~eI~~la~~~galliVD~a~~-~~~~~l--~~pg~~- 782 (985)
++++..+.+ +++ + +++++|++++|+ ++|.+.+ ++++|+++|+++|+++++|+++. ....+- .....+
T Consensus 149 ~~~~~~~~~-l~~-~----~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~ 222 (400)
T 3asa_A 149 LQENAFFPE-FPE-D----THIDILCLCSPNNPTGTVLNKDQLRAIVHYAIEHEILILFDAAYSTFISDPSLPKSIFEIP 222 (400)
T ss_dssp CGGGTTCCC-CCT-T----CCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTGGGCCCTTSCSSGGGST
T ss_pred chhcCcccC-hhh-c----cCccEEEEeCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEEchhhhhhcCCCCCCchhhCC
Confidence 654322221 221 1 467889999984 6898862 37789999999999999999985 221111 111122
Q ss_pred ---CCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHH
Q 001989 783 ---GADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTY 859 (985)
Q Consensus 783 ---g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~ 859 (985)
+.++++.|++|+|+. +|.++|++++++++..... ...... .........++. +.....++.++
T Consensus 223 ~~~~~~i~~~s~sK~~g~----~GlriG~~~~~~~~~~~~~-~~~~~~---~~~~~~~~~~~~------~~~~~~a~~~~ 288 (400)
T 3asa_A 223 DARFCAIEINSFSKPLGF----AGIRLGWTVIPQELTYADG-HFVIQD---WERFLSTTFNGA------SIPAQEAGVAG 288 (400)
T ss_dssp TGGGTEEEEEECCGGGTT----TTCCCEEEECCTTCBCTTS-CBHHHH---HHHHHHHHCCCC------CHHHHHHHHHH
T ss_pred CCCCceEEEecchhhcCC----cchheeEEeeChhhccchh-hhHHHH---HHHHhccCccCC------ChHHHHHHHHH
Confidence 234888999999854 3567899998877632110 000000 000000000011 11222222333
Q ss_pred HHHhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEE-ecCccccCCCCHHHHHHHHHH-CCCccCC
Q 001989 860 IAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVD-LRGLKNTAGIEPEDVAKRLMD-YGFHGPT 936 (985)
Q Consensus 860 l~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~-~~~~~~~~g~~~~~v~~~L~~-~Gi~~~~ 936 (985)
+... .+++..++..++++++.+.|++ ++.+. .+. +..+ +.++ ++ .+.+..++.++|.+ +||.+..
T Consensus 289 l~~~---~~~~~~~~~~~~~~~l~~~L~~~g~~~~-~~~-~~~~--~~~~~~~-----~~~~~~~~~~~l~~~~gv~v~~ 356 (400)
T 3asa_A 289 LSIL---PQLEAIHYYRENSDLLRKALLATGFEVF-GGE-HAPY--LWVKPTQ-----ANISDRDLFDFFLREYHIAITP 356 (400)
T ss_dssp HHHT---TTCHHHHHHHHHHHHHHHHHHHTTCEEE-ECS-SSSE--EEEECCC-----TTCCTTTHHHHHHHHHSEECEE
T ss_pred hCcH---HHHHHHHHHHHHHHHHHHHHHHCCCeee-CCC-CceE--EEEeccC-----CCCCHHHHHHHHHHhCCEEEeC
Confidence 4322 3455566677888999999986 44432 221 2222 3455 43 13455678888875 5998753
Q ss_pred C-CCC--CCCEEEEeccCCCCHHHHHHHHccCChhHHHHhh
Q 001989 937 M-SWP--VPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRL 974 (985)
Q Consensus 937 ~-~~p--~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~ 974 (985)
. .+. ..+++||+. .++++||++ +++.|++++++.
T Consensus 357 g~~f~~~~~~~iRis~--~~~~e~i~~--~l~~l~~~~~~~ 393 (400)
T 3asa_A 357 GIGFGRSGSGFVRFSS--LGKREDILA--ACERLQMAPALQ 393 (400)
T ss_dssp GGGGCGGGTTCEEEEC--CSCHHHHHH--HHHHHHC-----
T ss_pred hhHhCCCCCCEEEEEe--eCCHHHHHH--HHHHHHHHHHhh
Confidence 2 221 247899994 688999999 778887777654
|
| >2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism; HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2 PDB: 2c44_A 2v1p_A* 2v0y_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=7.8e-15 Score=172.08 Aligned_cols=304 Identities=17% Similarity=0.172 Sum_probs=176.4
Q ss_pred HHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHH-HHhcCCCCC-CEEEEcCCCCccc-HHHHHHCCcEEEEE---
Q 001989 634 FNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAY-HKARGDHHR-NVCIIPVSAHGTN-PATAAMCGMKIVSV--- 707 (985)
Q Consensus 634 ~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~-~~~~g~~~~-~~IIv~~~~Hg~~-~~~a~~~G~~vv~v--- 707 (985)
..++++++++++|.+.. +++++|++|++.++.+++.. ...+|. ++ |+|+++ ..|+.. .......|..++..
T Consensus 76 ~~~l~~~la~~~~~~~v-~~t~~gt~A~~~al~~~~~~~~~~~G~-~~~d~Ii~~-~~h~~t~~~~~~~~~~~~~~~~~~ 152 (467)
T 2oqx_A 76 YYALAESVKNIFGYQYT-IPTHQGRGAEQIYIPVLIKKREQEKGL-DRSKMVAFS-NYFFDTTQGHSQINGCTVRNVYIK 152 (467)
T ss_dssp HHHHHHHHHHHHCCSEE-EEEC--CCSHHHHHHHHHHHHHHHHCC-CTTTCEEEE-SSCCHHHHHHHHHTTCEEEECBCT
T ss_pred hHHHHHHHHHHhCcCcE-EEcCCcHHHHHHHHHHHhccccccCCC-CccceEEec-ccccccchhhhhccCcceeecccc
Confidence 34778899999988653 55667888887777766532 001131 12 677776 466432 22334566665543
Q ss_pred ---cCC----CCCCCCHHHHHHHHHhcC-CCEEEEEEEcCC-Cc-cccc--cCHHHHHHHHHHcCCEEEEEccccc----
Q 001989 708 ---GTD----AKGNINIEELRKAAEANR-DNLSTLMVTYPS-TH-GVYE--EGIDEICKIIHDNGGQVYMDGANMN---- 771 (985)
Q Consensus 708 ---~~d----~~g~iD~e~L~~~i~~~~-~~t~~Vvv~~pn-~~-G~i~--~di~eI~~la~~~galliVD~a~~~---- 771 (985)
+.+ .++.+|+++|+++|++++ ++|++|++++|+ ++ |.+. .++++|+++|+++|+++|+|++|..
T Consensus 153 ~~~~~~~~~~~~~~~d~~~Le~~i~~~~~~~~~~vi~~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~D~a~~~e~~~ 232 (467)
T 2oqx_A 153 EAFDTGVRYDFKGNFDLEGLERGIEEVGPNNVPYIVATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVMDSARFAENAY 232 (467)
T ss_dssp TTTCTTSCCTTTTCBCHHHHHHHHHHHCGGGCCCEEEESSBCGGGCBCCCHHHHHHHHHHHHHTTCCEEEECTTHHHHHH
T ss_pred ccccCCCCCCccCCcCHHHHHHHHHhcCCCceeEEEEeccccCCCCccCCHHHHHHHHHHHHHcCCEEEEEchhhhhhhh
Confidence 222 346789999999998432 378999999884 55 6552 2589999999999999999988753
Q ss_pred -------cccCCCCCCc------cCCcEEEeCCcccccccCCCCCCceEEEEEccc-ccC---cCCCCc-cccCCCCCCC
Q 001989 772 -------AQVGLTSPGY------IGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKH-LAP---FLPSHP-VVSTGGIPAP 833 (985)
Q Consensus 772 -------~~~~l~~pg~------~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~-l~~---~lp~~~-~g~~~~~~~~ 833 (985)
+..+. .+.. ..+|++++++||++++ |.+|+++++++ +++ .+.... .+...
T Consensus 233 ~~~~~~~~~~g~-~~~~~~~~~~~~~d~~~~s~sK~~g~------~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~----- 300 (467)
T 2oqx_A 233 FIKQREAEYKDW-TIEQITRETYKYADMLAMSAKKDAMV------PMGGLLCMKDDSFFDVYTECRTLCVVQEGF----- 300 (467)
T ss_dssp HHHHHCGGGTTS-CHHHHHHHHGGGCSEEEEESSSTTCC------SSCEEEEECSGGGHHHHHHHHHHHHHTTSS-----
T ss_pred hcccccccccCc-cHHHHhhhhhccCCeEEEecccccCC------CCceEEEecChhHHHHHHHHHHhhhccCCc-----
Confidence 12221 1112 2479999999999854 32367777755 322 111100 00000
Q ss_pred CCCCCCCCCCCcchhhhHHHHHHHHH-HHH-hcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEec
Q 001989 834 EKSQPLGTIAAAPWGSALILPISYTY-IAM-MGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLR 910 (985)
Q Consensus 834 ~~~~~~~~i~s~~~g~~~~~~~a~a~-l~~-lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~ 910 (985)
...+..+ .+ +..++.. +.. +.. +..++..++++++.+.|++ ++.+. +. +..+ +.++++
T Consensus 301 ---~~~~~~~-----~~--~~~al~~~l~~~~~~----~~~~~~~~~~~~l~~~L~~~~~~~~-~~--~~~~--~~~~~~ 361 (467)
T 2oqx_A 301 ---PTYGGLE-----GG--AMERLAVGLYDGMNL----DWLAYRIAQVQYLVDGLEEIGVVCQ-QA--GGHA--AFVDAG 361 (467)
T ss_dssp ---CCCCCCC-----HH--HHHHHHHHHHHTTCH----HHHHHHHHHHHHHHHHHHHTTCCEE-EE--CSSC--EEEEHH
T ss_pred ---ccccchh-----hh--HHHHHHHhhHhhhhH----HHHHHHHHHHHHHHHHHHHCCCeee-cC--CceE--EEEech
Confidence 0001111 11 1111111 111 111 1233446778889999976 45543 21 2222 334442
Q ss_pred CccccCCCC-----HHHHHHHH-HHCCCccCCCC---C---C--------CCCEEEEeccCC-CCHHHHHHHHccCChhH
Q 001989 911 GLKNTAGIE-----PEDVAKRL-MDYGFHGPTMS---W---P--------VPGTLMIEPTES-ESKSWTGIVMLSSPSEK 969 (985)
Q Consensus 911 ~~~~~~g~~-----~~~v~~~L-~~~Gi~~~~~~---~---p--------~~~~lris~t~~-~t~eeId~~~~~~~l~~ 969 (985)
.+. .+.+ ...++++| .++||.+.... + | ..+.+|++++.. +|++||++ +++.|++
T Consensus 362 ~~~--~~~~~~~~~~~~l~~~L~~~~gv~~~~~~~~~~~~~~~~g~~~~~~~~~iRl~~~~~~~t~e~i~~--~~~~l~~ 437 (467)
T 2oqx_A 362 KLL--PHIPADQFPAQALACELYKVAGIRAVEIGSFLLGRDPKTGKQLPCPAELLRLTIPRATYTQTHMDF--IIEAFKH 437 (467)
T ss_dssp HHS--TTSCGGGCHHHHHHHHHHHHHCEECEEESHHHHCBCTTTCSBCCCSCCEEEECCCTTTSCHHHHHH--HHHHHHH
T ss_pred hhc--ccCCcccccHHHHHHHHHHhcCceecccccccccccccccccccCccCeEEEEecCCCCCHHHHHH--HHHHHHH
Confidence 100 0122 45678888 88899864311 1 1 137999999998 99999999 8889999
Q ss_pred HHHhhc
Q 001989 970 KLHRLK 975 (985)
Q Consensus 970 ~~~~~~ 975 (985)
++++++
T Consensus 438 ~l~~~~ 443 (467)
T 2oqx_A 438 VKENAA 443 (467)
T ss_dssp HHHSGG
T ss_pred HHhhhh
Confidence 887655
|
| >1jg8_A L-ALLO-threonine aldolase; glycine biosynthesis, pyridoxal-5'- phosphate, calcium binding site, structural genomics, PSI; HET: LLP; 1.80A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1lw4_A* 1lw5_A* 1m6s_A* 2fm1_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=2.8e-14 Score=160.28 Aligned_cols=272 Identities=16% Similarity=0.165 Sum_probs=169.5
Q ss_pred HHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEe------
Q 001989 213 LLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVS------ 286 (985)
Q Consensus 213 i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v------ 286 (985)
..++++.+|+++|.+. +.++.+||.+...++.++ .++||+|++++..|++...... .++..|++++.+
T Consensus 40 ~~~l~~~la~~~g~~~--~~~~~~gt~a~~~~~~~~---~~~gd~Vl~~~~~~~~~~~~~~-~~~~~g~~~~~v~~~~~~ 113 (347)
T 1jg8_A 40 INELERLAAETFGKEA--ALFVPSGTMGNQVSIMAH---TQRGDEVILEADSHIFWYEVGA-MAVLSGVMPHPVPGKNGA 113 (347)
T ss_dssp HHHHHHHHHHHHTCSE--EEEESCHHHHHHHHHHHH---CCTTCEEEEETTCHHHHSSTTH-HHHHTCCEEEEECEETTE
T ss_pred HHHHHHHHHHHhCCce--EEEecCcHHHHHHHHHHh---cCCCCEEEEcCcchhhhccccc-hhhccCeEEEEecCCCCc
Confidence 3467899999999863 667788887666555443 2389999999999987553110 012346676655
Q ss_pred -Cchhhhc-cCC------CEeEEEEEcC-CCC-eeec---cHHHHHHHHHhCCcEEEEEe-cCc-cccCC-CCCCc--cc
Q 001989 287 -DLKDIDY-KSG------DVCGVLVQYP-GTE-GEVL---DYGDFIKNAHANGVKVVMAT-DLL-ALTIL-KPPGE--LG 348 (985)
Q Consensus 287 -~~~~l~~-l~~------~t~~V~v~~p-n~~-G~v~---di~~I~~~a~~~galliV~a-~~~-~lg~l-~~~~~--~G 348 (985)
|++++++ +++ +|++|++.+| |++ |.+. ++++|+++|+++|+++++|. +.. ++... .++.. .+
T Consensus 114 ~d~~~l~~~i~~~~~~~~~~~~v~~~~~~npt~G~~~~~~~l~~i~~~a~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~ 193 (347)
T 1jg8_A 114 MDPDDVRKAIRPRNIHFPRTSLIAIENTHNRSGGRVVPLENIKEICTIAKEHGINVHIDGARIFNASIASGVPVKEYAGY 193 (347)
T ss_dssp ECHHHHHHHSCCSCTTSCCEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCEEEEEETTHHHHHHHHCCCHHHHHHT
T ss_pred cCHHHHHHHhccccccccCceEEEEeccccccCCccCcHHHHHHHHHHHHHCCCEEEeehhhhhcchhhcCCChHHhccc
Confidence 3355666 654 6999999988 678 9985 46899999999999999953 211 11111 11222 46
Q ss_pred ceEEEecC-ccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHH
Q 001989 349 ADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALL 427 (985)
Q Consensus 349 aDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~ 427 (985)
+|.++.+. |+|++| -.++++.++++++++.. + + +. ..++.+. .++.
T Consensus 194 ~d~~~~s~sK~l~~~------~G~~~~~~~~~~~~~~~--------------~------~-~~---~~~~~~~---~~~~ 240 (347)
T 1jg8_A 194 ADSVMFCLSKGLCAP------VGSVVVGDRDFIERARK--------------A------R-KM---LGGGMRQ---AGVL 240 (347)
T ss_dssp CSEEEEESSSTTCCS------SCEEEEECHHHHHHHHH--------------H------H-HH---HTCCCSS---THHH
T ss_pred ccEEEEecccccCCC------ceEEEEcCHHHHHHHHH--------------H------H-HH---cCCchhH---HHHH
Confidence 89888777 777543 22466777777654310 0 0 00 0001110 1121
Q ss_pred HHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEc-CCCCcceEEEecC--C--HHHHHHHHHHcCceeeee
Q 001989 428 ANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQ-GLPFFDTVKVKCA--D--AHAIASAAYKIEMNLRVV 502 (985)
Q Consensus 428 a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~-~~~~~~~~~~~~~--~--~~~v~~~L~~~GI~~~~~ 502 (985)
+..+..-+..+ .+-++ +..++++++++.|+++| +++. .++..+-+.+..+ + ..++.++|.++||.++..
T Consensus 241 ~~~~~~~l~~~-~~~~~----~~~~~~~~l~~~L~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~ 314 (347)
T 1jg8_A 241 AAAGIIALTKM-VDRLK----EDHENARFLALKLKEIG-YSVNPEDVKTNMVILRTDNLKVNAHGFIEALRNSGVLANAV 314 (347)
T ss_dssp HHHHHHHHHHS-STTHH----HHHHHHHHHHHHHHHHT-CBCCGGGCCSSEEEEECTTSSSCHHHHHHHHHHHTEECEEE
T ss_pred HHHHHHHHHHH-HHHHH----HHHHHHHHHHHHHHhcC-ceeccCCCcceEEEEEcccccCCHHHHHHHHHHCCCEEecC
Confidence 11111111221 12222 23456788888888775 7652 2222233445554 3 788999999999988765
Q ss_pred cCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 503 DSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 503 ~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
..+.+|++++..+|++|+++++++|.+
T Consensus 315 ~~~~iRl~~~~~~~~e~i~~~~~~l~~ 341 (347)
T 1jg8_A 315 SDTEIRLVTHKDVSRNDIEEALNIFEK 341 (347)
T ss_dssp ETTEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCeEEEEeCCCCCHHHHHHHHHHHHH
Confidence 567899999999999999999999873
|
| >1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.35A {Thermus thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=3.4e-14 Score=162.73 Aligned_cols=275 Identities=15% Similarity=0.102 Sum_probs=178.2
Q ss_pred HHHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhh-hhcCCCCEEEEcCCCC-hhHHHHHHHhhcC---------C
Q 001989 211 ESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNN-IQKGKKKTFIIASNCH-PQTIDICITRADG---------F 279 (985)
Q Consensus 211 ~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~-~~~~~g~~Vlv~~~~H-~s~~~~~~~~a~~---------~ 279 (985)
+...++++.+++++|.+..++.+++|||.++++++.+.+ +. ++++||+.+..| ..+...+.. +.. .
T Consensus 87 ~~~~~l~~~la~~~~~~~~~v~~~~gg~~a~~~al~~~~~~~--~~~~vi~~~~~y~~~~~~~~~~-~g~~~~~~~~~p~ 163 (395)
T 1vef_A 87 PMRGEFYRTLTAILPPELNRVFPVNSGTEANEAALKFARAHT--GRKKFVAAMRGFSGRTMGSLSV-TWEPKYREPFLPL 163 (395)
T ss_dssp HHHHHHHHHHHHTSCTTEEEEEEESSHHHHHHHHHHHHHHHH--SCCEEEEETTCCCCSSHHHHHT-CCCHHHHGGGCSC
T ss_pred HHHHHHHHHHHHhcCCCcCEEEEcCcHHHHHHHHHHHHHHHh--CCCeEEEEcCCcCCCchhhhhh-cCCcccccccCCC
Confidence 345678899999998877789899999988887775432 23 678888777554 444444431 111 0
Q ss_pred CeEEEE---eCchhhhc-cCCCEeEEEEEcC-CCCeeecc----HHHHHHHHHhCCcEEEEEecCcc-ccCCCCC-----
Q 001989 280 DIKVVV---SDLKDIDY-KSGDVCGVLVQYP-GTEGEVLD----YGDFIKNAHANGVKVVMATDLLA-LTILKPP----- 344 (985)
Q Consensus 280 gi~v~~---v~~~~l~~-l~~~t~~V~v~~p-n~~G~v~d----i~~I~~~a~~~galliV~a~~~~-lg~l~~~----- 344 (985)
..++.. .|+++|++ +++++++|++..+ |.+|.+.| +++|.++||++|+++++|. ..+ ++.....
T Consensus 164 ~~~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~~~~~l~~i~~l~~~~~~~li~De-a~~~~~~~g~~~~~~~ 242 (395)
T 1vef_A 164 VEPVEFIPYNDVEALKRAVDEETAAVILEPVQGEGGVRPATPEFLRAAREITQEKGALLILDE-IQTGMGRTGKRFAFEH 242 (395)
T ss_dssp SSCEEEECTTCHHHHHHHCCTTEEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEEC-TTTTTTTTSSSSTHHH
T ss_pred CCCeeEeCCCcHHHHHHHhccCEEEEEEeCccCCCCccCCCHHHHHHHHHHHHHcCCEEEEEe-cccCCccCCchhHhhh
Confidence 111333 35577777 8888998887654 56998887 9999999999999999953 333 3211111
Q ss_pred CcccceEEEecCccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchh
Q 001989 345 GELGADIVVGSAQRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQ 424 (985)
Q Consensus 345 ~~~GaDi~v~s~k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~ 424 (985)
...++|++.. +|+|++ |.++|++++++++++.+.. +.. ..|... +..
T Consensus 243 ~~~~~d~~s~-sK~~~~-----g~~~G~~~~~~~~~~~l~~----------~~~----------------~~~~~~-~~~ 289 (395)
T 1vef_A 243 FGIVPDILTL-AKALGG-----GVPLGVAVMREEVARSMPK----------GGH----------------GTTFGG-NPL 289 (395)
T ss_dssp HTCCCSEEEE-CGGGGT-----TSSCEEEEEEHHHHHTSCT----------TSS----------------CCSSTT-CHH
T ss_pred cCCCCCEEEE-cccccC-----CCceEEEEehHHHHhhhcc----------CCc----------------CCCcCC-CHH
Confidence 1235797733 588853 3457899999888776632 000 011111 111
Q ss_pred HHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcC--CCCcceEEEecCC-HHHHHHHHH-HcCceee
Q 001989 425 ALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQG--LPFFDTVKVKCAD-AHAIASAAY-KIEMNLR 500 (985)
Q Consensus 425 ~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~--~~~~~~~~~~~~~-~~~v~~~L~-~~GI~~~ 500 (985)
...+..+++ ..+.. +++.++..++.+++.+.|++++ ..++. .+...-+.+.++. ..++.+.|. ++||.+.
T Consensus 290 ~~~a~~~al--~~~~~---~~~~~~~~~~~~~l~~~l~~~~-~~~~~~~~~~g~~~~~~~~~~~~~l~~~l~~~~gi~v~ 363 (395)
T 1vef_A 290 AMAAGVAAI--RYLER---TRLWERAAELGPWFMEKLRAIP-SPKIREVRGMGLMVGLELKEKAAPYIARLEKEHRVLAL 363 (395)
T ss_dssp HHHHHHHHH--HHHHH---HTTHHHHHHHHHHHHHHHHTSC-CTTEEEEEEETTEEEEEESSCSHHHHHHHHHHHCEECE
T ss_pred HHHHHHHHH--HHHHh---CCHHHHHHHHHHHHHHHHHHhh-cCceEEEEEEEEEEEEEEcChHHHHHHHHHHHCCeEEe
Confidence 222222222 33322 3467778889999999999876 32110 1111234455554 778999999 8999887
Q ss_pred eecCCeEEEEeccCCCHHHHHHHHHHHh
Q 001989 501 VVDSNTVTASFDETTTLEDVDKLFIVFA 528 (985)
Q Consensus 501 ~~~~~~lris~t~~~t~edId~li~aL~ 528 (985)
....+.+|++++..+|++|+++++++|.
T Consensus 364 ~~~~~~iRi~~~~~~~~~~i~~~~~~l~ 391 (395)
T 1vef_A 364 QAGPTVIRFLPPLVIEKEDLERVVEAVR 391 (395)
T ss_dssp ESSTTEEEECCCTTCCHHHHHHHHHHHH
T ss_pred cCCCCEEEEeCCCCCCHHHHHHHHHHHH
Confidence 6556899999999999999999999986
|
| >2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea, thermococcus L transferase; HET: PMP; 2.30A {Thermococcus litoralis} | Back alignment and structure |
|---|
Probab=99.60 E-value=5e-14 Score=161.93 Aligned_cols=271 Identities=11% Similarity=0.056 Sum_probs=178.9
Q ss_pred HHHHHHHHhc----C--CCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc
Q 001989 215 NFQTMIADLT----G--LPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL 288 (985)
Q Consensus 215 e~q~~ia~L~----g--~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~ 288 (985)
++++.+|+++ | .++.++.+++|+|.++++++.++. ++||+|+++...|+.+...++ ..|++++.++.
T Consensus 79 ~l~~~la~~~~~~~g~~~~~~~v~~t~g~t~a~~~~~~~~~---~~gd~vl~~~p~~~~~~~~~~----~~g~~~~~v~~ 151 (407)
T 2zc0_A 79 ELREELAAFLKKYDHLEVSPENIVITIGGTGALDLLGRVLI---DPGDVVITENPSYINTLLAFE----QLGAKIEGVPV 151 (407)
T ss_dssp HHHHHHHHHHHHHSCCCCCGGGEEEESHHHHHHHHHHHHHC---CTTCEEEEEESCCHHHHHHHH----TTTCEEEEEEE
T ss_pred HHHHHHHHHHHHhcCCCCCcceEEEecCHHHHHHHHHHHhc---CCCCEEEEeCCChHHHHHHHH----HcCCEEEEccc
Confidence 4556777776 8 456788899999988887776652 378999999999998887764 45778777643
Q ss_pred -------hhhhc-cC----C--CEeEEE-EEcC-CCCeeeccHH---HHHHHHHhCCcEEEEEecCccccCCC-----CC
Q 001989 289 -------KDIDY-KS----G--DVCGVL-VQYP-GTEGEVLDYG---DFIKNAHANGVKVVMATDLLALTILK-----PP 344 (985)
Q Consensus 289 -------~~l~~-l~----~--~t~~V~-v~~p-n~~G~v~di~---~I~~~a~~~galliV~a~~~~lg~l~-----~~ 344 (985)
++|++ ++ + ++++|+ +.+| |.+|.+.|++ +|+++|+++|+++++|. ..+.+... +.
T Consensus 152 ~~~~~d~~~l~~~l~~~~~~~~~~~~v~~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De-~~~~~~~~~~~~~~~ 230 (407)
T 2zc0_A 152 DNDGMRVDLLEEKIKELKAKGQKVKLIYTIPTGQNPMGVTMSMERRKALLEIASKYDLLIIEDT-AYNFMRYEGGDIVPL 230 (407)
T ss_dssp ETTEECHHHHHHHHHHHHHTTCCEEEEEECCSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEC-TTTTSBSSCSSCCCG
T ss_pred CCCCCCHHHHHHHHHhhhcccCCceEEEECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEC-CCcccccCCCCCCCh
Confidence 45665 55 4 788875 5666 7799998876 99999999999999953 33332221 11
Q ss_pred Cc---ccceEEEecC-ccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCc
Q 001989 345 GE---LGADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNI 420 (985)
Q Consensus 345 ~~---~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni 420 (985)
.. .+.+++++|. |.|+ | | -.+|++++++++.+.+.... . ..+.
T Consensus 231 ~~~~~~~~~i~~~s~sK~~~-~-G---~r~G~~~~~~~~~~~~~~~~--------------------------~--~~~~ 277 (407)
T 2zc0_A 231 KALDNEGRVIVAGTLSKVLG-T-G---FRIGWIIAEGEILKKVLMQK--------------------------Q--PIDF 277 (407)
T ss_dssp GGGCSSCCEEEEEESTTTTC-T-T---SCCEEEECCHHHHHHHHHHH--------------------------T--TTTS
T ss_pred hhcCCCCCEEEEcccccccC-C-C---cceEEEecCHHHHHHHHHHH--------------------------H--hhcC
Confidence 12 2556788886 8775 3 1 12689999887776541100 0 0011
Q ss_pred cchh-HHHHHHHHHHHHHh-Cc-chHHHHHHHHHHHHHHHHHHHhcC-CCeEEcCCCCcceEEEecCC---HHHHHHHHH
Q 001989 421 CTAQ-ALLANMAAMYAVYH-GP-EGLKTIAQRVHGLAGTFALGLKKL-GTVEVQGLPFFDTVKVKCAD---AHAIASAAY 493 (985)
Q Consensus 421 ~t~~-~l~a~~aa~~l~~~-g~-~Gl~~i~~~~~~~a~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~---~~~v~~~L~ 493 (985)
+++. ...+..++ +... -. +.++++.++..++.+++.+.|++. +++++..+....-+.+..+. ..++.+.|.
T Consensus 278 ~~~~~~~~~~~~~--l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 355 (407)
T 2zc0_A 278 CAPAISQYIALEY--LKRGYFEKYHLEGALLGYKEKRDIMLKALENHLPNAEFTKPIAGMFVMFFLPEGADGISFANELM 355 (407)
T ss_dssp SSCHHHHHHHHHH--HHTTHHHHHTTTTHHHHHHHHHHHHHHHHHHHCTTSCBCCCSBSSEEEEECSTTCCHHHHHHHHH
T ss_pred CCCHHHHHHHHHH--HHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEecCCCcEEEEEEcCCCCCHHHHHHHHH
Confidence 1111 12122121 2211 02 456677888888999999999874 33665432211234455542 788999999
Q ss_pred Hc-Cceeeee--------cCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 494 KI-EMNLRVV--------DSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 494 ~~-GI~~~~~--------~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
++ ||.+... ..+.+|++++.. |++||++++++|.+
T Consensus 356 ~~~gi~v~~g~~~~~~~~~~~~iRis~~~~-~~~~i~~~~~~l~~ 399 (407)
T 2zc0_A 356 EREGVVVVPGKPFYTDESGKNAIRLNFSRP-SKEEIPIGIKKLAK 399 (407)
T ss_dssp HHTCEECBCSGGGCSSSCCTTEEEEECSSS-CTTHHHHHHHHHHH
T ss_pred HhCCeEEECchhccCCCCCCCeEEEEeCCC-CHHHHHHHHHHHHH
Confidence 88 9987542 247899999877 89999999999874
|
| >3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog; NP_348457.1, putative cystathionine beta-lyase involved in A resistance; HET: LLP MSE; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.59 E-value=3e-14 Score=164.74 Aligned_cols=218 Identities=17% Similarity=0.194 Sum_probs=152.9
Q ss_pred HHHHHHHHHHhcCCCCcceee---ccchHHHHHHHHHHhhhhcCCCCEEEEcC-CCChhHHHHH-------HHhhcCCCe
Q 001989 213 LLNFQTMIADLTGLPMSNASL---LDEGTAAAEAMAMCNNIQKGKKKTFIIAS-NCHPQTIDIC-------ITRADGFDI 281 (985)
Q Consensus 213 i~e~q~~ia~L~g~~~~~~sl---~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~-~~H~s~~~~~-------~~~a~~~gi 281 (985)
..++++.+|+++|.+.+ .+ +.+||+++.+++.++ + ++||+||+++ ..|+.....+ ...++..|+
T Consensus 76 ~~~Le~~lA~l~g~e~a--lv~p~~~sGt~A~~~al~al-l--~pGD~Vl~~~~~~y~~~~~~~g~~~~~~~~~l~~~G~ 150 (427)
T 3hvy_A 76 RDSLDRVYANIFNTESA--FVRPHFVNGTHAIGAALFGN-L--RPNDTMMSICGMPYDTLHDIIGMDDSKKVGSLREYGV 150 (427)
T ss_dssp HHHHHHHHHHHHTCSEE--EEETTCCSHHHHHHHHHHHT-C--CTTCEEEECSSSCCGGGHHHHTCCTTCCSCCTGGGTC
T ss_pred HHHHHHHHHHHhCCCce--EEeCCCCcHHHHHHHHHHHh-c--CCCCEEEEeCCCCchhHHHHhccccchhhhHHHHcCC
Confidence 45677899999999874 44 688888877776665 2 3899999998 8898877555 122345799
Q ss_pred EEEEeCc-------hhhhc-cC--CCEeEEEEEc----C-CCCeeeccHHHHHHHHHh--CCcEEEEEecCccccC-CCC
Q 001989 282 KVVVSDL-------KDIDY-KS--GDVCGVLVQY----P-GTEGEVLDYGDFIKNAHA--NGVKVVMATDLLALTI-LKP 343 (985)
Q Consensus 282 ~v~~v~~-------~~l~~-l~--~~t~~V~v~~----p-n~~G~v~di~~I~~~a~~--~galliV~a~~~~lg~-l~~ 343 (985)
+++.+|. +++++ ++ ++|++|++++ | |++|.+.|+++|+++||+ +|++++|| +.++.+. ...
T Consensus 151 ~~~~v~~~~~~~d~e~l~~~i~~~~~tklV~i~~s~gyp~nptg~v~dl~~i~~ia~~~~~g~~livD-~a~~~~~~~~~ 229 (427)
T 3hvy_A 151 KYKMVDLKDGKVDINTVKEELKKDDSIKLIHIQRSTGYGWRKSLRIAEIAEIIKSIREVNENVIVFVD-NCYGEFVEEKE 229 (427)
T ss_dssp EEEECCCBTTBCCHHHHHHHHHHCTTEEEEEEESSCCSSSSCCCCHHHHHHHHHHHHHHCSSSEEEEE-CTTCTTTSSSC
T ss_pred EEEEecCCCCCcCHHHHHHHhhCCCCCEEEEEECCCCCCCCccccHHHHHHHHHHHHHhCCCCEEEEE-CCccccccCCC
Confidence 9998865 45666 66 8899999998 7 789999999999999999 89999995 4555555 456
Q ss_pred CCcccceEEEecC-ccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccc
Q 001989 344 PGELGADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICT 422 (985)
Q Consensus 344 ~~~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t 422 (985)
|.++|+||+++|. |.|+++ |.|..|++++++++++++..+.. . + .+...-+.+.
T Consensus 230 p~~~gaDiv~~S~sK~lgg~---g~~~GG~i~~~~~li~~l~~~~~-----~---~-----------~~g~~~~~~~--- 284 (427)
T 3hvy_A 230 PTDVGADIIAGSLIKNIGGG---IATTGGYIAGKEEYVTQATFRVT-----V---P-----------GIGGECGSTF--- 284 (427)
T ss_dssp GGGGTCSEEEEETTSGGGTT---TCCSCEEEEECHHHHHHHHHHHS-----C---T-----------TTGGGCCCCT---
T ss_pred CcccCCeEEEECCccccccc---ccceEEEEEECHHHHHHHHHHhh-----c---C-----------CcccccCCCH---
Confidence 7789999999998 877642 33556999999988876521100 0 0 0000001000
Q ss_pred hhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEc
Q 001989 423 AQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQ 470 (985)
Q Consensus 423 ~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~ 470 (985)
...+. .+.|.+-+..+.++..+++.++++.|+++| +++.
T Consensus 285 -~~a~~-------~~~gl~~~~~r~~~~~~~a~~la~~L~~~g-~~V~ 323 (427)
T 3hvy_A 285 -GVMRS-------LYEGLFMAPHVTIEAVKGAVFCARIMELAG-FDVL 323 (427)
T ss_dssp -TCHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CEEE
T ss_pred -HHHHH-------HHHhHhHHHHHHHHHHHHHHHHHHHHHhCC-Ceec
Confidence 00111 122222345677888899999999999998 7775
|
| >3b1d_A Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococcus anginosus} PDB: 3b1c_A* 3b1e_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=1e-16 Score=183.85 Aligned_cols=299 Identities=13% Similarity=0.090 Sum_probs=181.9
Q ss_pred HHHHHHHHHHHHHhC--CCccc-eecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEc
Q 001989 632 EMFNNLGEWLCTITG--FDSFS-LQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVG 708 (985)
Q Consensus 632 ~~~~e~~~~la~l~G--~~~~~-~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~ 708 (985)
++.+++.+++.+.+| .+... ++.++|++++..++.++. .++++|+++.+.|..+...++..|.+++.+|
T Consensus 70 ~l~~~la~~l~~~~g~~~~~~~v~~~~g~~~a~~~~~~~~~--------~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~ 141 (392)
T 3b1d_A 70 ELLQAVLDWEKSEHQYSFDKEDIVFVEGVVPAISIAIQAFT--------KEGEAVLINSPVYPPFARSVRLNNRKLVSNS 141 (392)
Confidence 344455555555666 33333 444555666654444332 3568899988777776666777899999998
Q ss_pred CC-CC--CCCCHHHHHHHHHhcCCCEEEEEEEcCC-Ccccccc--CHHHHHHHHHHcCCEEEEEccccccc-cC--CCCC
Q 001989 709 TD-AK--GNINIEELRKAAEANRDNLSTLMVTYPS-THGVYEE--GIDEICKIIHDNGGQVYMDGANMNAQ-VG--LTSP 779 (985)
Q Consensus 709 ~d-~~--g~iD~e~L~~~i~~~~~~t~~Vvv~~pn-~~G~i~~--di~eI~~la~~~galliVD~a~~~~~-~~--l~~p 779 (985)
.+ .+ +.+|+++|++++++ +++++|++++|+ ++|.+.+ ++++|.++|+++|+++++|+++.... .+ ....
T Consensus 142 ~~~~~g~~~~d~~~l~~~l~~--~~~~~v~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~ 219 (392)
T 3b1d_A 142 LKEENGLFQIDFEQLENDIVE--NDVKLYLLCNPHNPGGRVWEREVLEQIGHLCQKHHVILVSDEIHQDLTLFGHEHVSF 219 (392)
Confidence 85 32 45899999999862 467888888884 6898751 49999999999999999999984211 11 0011
Q ss_pred C---c--cCCcEEEeCCcccccccCCCCCCceEEEEEcc-cccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHH
Q 001989 780 G---Y--IGADVCHLNLHKTFCIPHGGGGPGMGPIGVKK-HLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALIL 853 (985)
Q Consensus 780 g---~--~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~-~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~ 853 (985)
. . .+.++++.|++|+|+. +|.++|++++++ ++.+.+..... ...+++. +....
T Consensus 220 ~~~~~~~~~~~i~~~s~sK~~~~----~G~r~G~~~~~~~~~~~~~~~~~~-----------~~~~~~~------~~~~~ 278 (392)
T 3b1d_A 220 NTVSPDFKDFALVLSSATKTFNI----AGTKNSYAIIENPTLCAQFKHQQL-----------VNNHHEV------SSLGY 278 (392)
Confidence 0 1 3445778899999854 367889998864 46655432110 0000111 11112
Q ss_pred HHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHH-HCC
Q 001989 854 PISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLM-DYG 931 (985)
Q Consensus 854 ~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~-~~G 931 (985)
.++.+.+.. +.+.+.+..++..++++++.+.|++ ...+....+.+.++ +.++++. .+.+..++.++|. ++|
T Consensus 279 ~a~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~--~~i~~~~----~~~~~~~l~~~l~~~~g 351 (392)
T 3b1d_A 279 IATETAYRY-GKPWLVALKAVLEENIQFAVEYFAQEAPRLKVMKPQGTYL--IWLDFSD----YGLTDDALFTLLHDQAK 351 (392)
Confidence 222233332 2344556666677778888888865 22222212212211 1244431 1235678889996 789
Q ss_pred CccCCCC-CC--CCCEEEEeccCCCCHHHHHHHHccCChhHHHH
Q 001989 932 FHGPTMS-WP--VPGTLMIEPTESESKSWTGIVMLSSPSEKKLH 972 (985)
Q Consensus 932 i~~~~~~-~p--~~~~lris~t~~~t~eeId~~~~~~~l~~~~~ 972 (985)
|.+.... +. .++++||+++. ++++|++ .++.|+++++
T Consensus 352 i~v~~g~~f~~~~~~~iRi~~~~--~~e~i~~--~l~~l~~~l~ 391 (392)
T 3b1d_A 352 VILNRGSDYGSEGELHARLNIAA--PKSLVEE--ICKRIVCCLP 391 (392)
Confidence 9875422 22 24689999765 5789999 7788877654
|
| >4eu1_A Mitochondrial aspartate aminotransferase; ssgcid, structural genomics, SEA structural genomics center for infectious disease; HET: LLP; 2.30A {Trypanosoma brucei} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.5e-14 Score=166.61 Aligned_cols=287 Identities=13% Similarity=0.072 Sum_probs=168.8
Q ss_pred HHHHHHHHHh-CCC-----ccce---ecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEE
Q 001989 636 NLGEWLCTIT-GFD-----SFSL---QPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVS 706 (985)
Q Consensus 636 e~~~~la~l~-G~~-----~~~~---~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~ 706 (985)
++++.+++++ |.+ ...+ ...+|+++...+..+++.+ ..++|+|+++++.|+.+...++..|++++.
T Consensus 83 ~lr~~ia~~~~~~~~~~~~~~~i~~~~~~~g~ga~~~~~~~~~~~-----~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~ 157 (409)
T 4eu1_A 83 SFVEEAQKLCFGPTCAALRDGRIASCQTLGGTGALRIGGDLLNRF-----VANCNRIYGPDVGYPNHESIFAKAGMELTP 157 (409)
T ss_dssp HHHHHHHHHHHCSSCHHHHTTCEEEEEESHHHHHHHHHHHHGGGT-----SSSCCEEEEESSCCTHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHcCCCchhhccCceeeeecccchHHHHHHHHHHHHh-----cCCCCEEEEeCCCcHhHHHHHHHcCCeEEE
Confidence 5566666654 654 2222 3456666654433333322 136789999999888888888899999999
Q ss_pred EcC--CCCCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccc--cCHHHHHHHHHHcCCEEEEEccccc-cccCC----
Q 001989 707 VGT--DAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYE--EGIDEICKIIHDNGGQVYMDGANMN-AQVGL---- 776 (985)
Q Consensus 707 v~~--d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~--~di~eI~~la~~~galliVD~a~~~-~~~~l---- 776 (985)
+|+ ++++.+|+++|++++++++++++++++++| |++|.+. .++++|+++|+++|+++++|+++.. ..++.
T Consensus 158 ~~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~y~~~~~~~~~~~~ 237 (409)
T 4eu1_A 158 YSYYDPATKGLNLAGMLECLDKAPEGSVILVHACAHNPTGVDPTHDDWRQVCDVIKRRNHIPFVDMAYQGFATGQLDYDA 237 (409)
T ss_dssp ECCEETTTTEECHHHHHHHHHHSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHT
T ss_pred EEeecCcCCcCcHHHHHHHHHhCCCCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEeccccccccCCcccch
Confidence 998 345789999999999754456777777888 5789886 1366699999999999999998641 11110
Q ss_pred CC----CCccCCcEEEeCCcccccccCCCCCCceEEE--EE-ccc----ccCcCCCCccccCCCCCCCCCCCCCCCCCCc
Q 001989 777 TS----PGYIGADVCHLNLHKTFCIPHGGGGPGMGPI--GV-KKH----LAPFLPSHPVVSTGGIPAPEKSQPLGTIAAA 845 (985)
Q Consensus 777 ~~----pg~~g~Di~~~s~hK~l~~p~g~GGPg~G~i--~~-~~~----l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~ 845 (985)
.. .+...-.+++.|++|+|++| |.++|++ ++ +++ +...+.... + ..+.+.+
T Consensus 238 ~~~~~~~~~~~~~i~~~S~SK~~g~~----G~riG~~~~v~~~~~~~~~l~~~~~~~~-----------~-~~~~~~~-- 299 (409)
T 4eu1_A 238 FVPRHLVDMVPNLIVAQSFSKNFGLY----GHRCGALHISTASAEEAKRLVSQLALLI-----------R-PMYNNPP-- 299 (409)
T ss_dssp HHHHHHHTTSSCCEEEEECTTTSSCG----GGCCEEEEEECSSHHHHHHHHHHHHHHH-----------H-HHHSSCC--
T ss_pred HHHHHHHhhCCcEEEEecCcccccCc----cCCceEEEEEeCCHHHHHHHHHHHHHHH-----------h-hhcCCCC--
Confidence 00 01112236777888988643 5678996 44 444 333221100 0 0011111
Q ss_pred chhhhHHHHHHHHHHHHhc-----HHHHHHHHHHHHHHHHHHHHHhhc-cCC--eeecCCCCceeeEEEEEecCccccCC
Q 001989 846 PWGSALILPISYTYIAMMG-----SKGLTEASKIAILNANYMAKRLEK-HYP--ILFRGVNGTVAHEFIVDLRGLKNTAG 917 (985)
Q Consensus 846 ~~g~~~~~~~a~a~l~~lg-----~eGl~~~~~~~~~~a~~l~~~L~~-g~~--l~~~~~~~~~~~~~iv~~~~~~~~~g 917 (985)
.....++.+++.... .+.+++..++..++++++.+.|++ +.. +.+..+.+..+ .+ . +
T Consensus 300 ----~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~---~~-~-------~ 364 (409)
T 4eu1_A 300 ----LYGAWVVSSILKDPQLTALWKKELKQMSSRIAEVRKRLVSELKACGSVHDWSHIERQVGMM---AY-T-------G 364 (409)
T ss_dssp ----HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCHHHHHSCSSE---EE-C-------C
T ss_pred ----hHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcceecCCceEE---EE-e-------C
Confidence 111122222333110 233556666778888999999986 311 21111112222 11 1 2
Q ss_pred CCHHHHHHHHH-HCCCccCCCCCCCCCEEEEeccCCCCHHHHHHHHccCChhHHH
Q 001989 918 IEPEDVAKRLM-DYGFHGPTMSWPVPGTLMIEPTESESKSWTGIVMLSSPSEKKL 971 (985)
Q Consensus 918 ~~~~~v~~~L~-~~Gi~~~~~~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~~ 971 (985)
.+.+ ++++|. ++||.+.. ..||++.. .+++||++ ++++|++++
T Consensus 365 ~~~~-~~~~ll~~~gv~v~p-------~~Ri~~~~-~~~~~i~~--~~~~l~~~l 408 (409)
T 4eu1_A 365 LTRE-QVELLRSEYHIYMTL-------NGRAAVSG-LNSTNVEY--VSQAIHNVT 408 (409)
T ss_dssp CCHH-HHHHHHHHHCEECCT-------TCEEEGGG-CCTTTHHH--HHHHHHHHH
T ss_pred CCHH-HHHHHHHcCCEEEcC-------CCEEEEEe-cCHhhHHH--HHHHHHHHh
Confidence 3444 455554 56998742 24788765 45677999 777777654
|
| >3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural genomics consortium, pyridoxal phosphate; HET: PLP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.58 E-value=2.3e-14 Score=169.84 Aligned_cols=314 Identities=13% Similarity=0.101 Sum_probs=186.0
Q ss_pred hhHHHHHHHHHHHHHHHhC-CC--ccce-ecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcE
Q 001989 628 QGYQEMFNNLGEWLCTITG-FD--SFSL-QPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMK 703 (985)
Q Consensus 628 ~G~~~~~~e~~~~la~l~G-~~--~~~~-~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~ 703 (985)
+|..++.+++.+++.+..| .+ ...+ ..+++++++..+ ++.+. ..|..++++|+++.+.|..+...++..|++
T Consensus 129 ~G~~~lr~~ia~~~~~~~gG~~~~~~~i~~t~G~~~ai~~~---~~~l~-~~gd~~~d~Vlv~~p~y~~~~~~~~~~g~~ 204 (498)
T 3ihj_A 129 QGVNCIREDVAAYITRRDGGVPADPDNIYLTTGASDGISTI---LKILV-SGGGKSRTGVMIPIPQYPLYSAVISELDAI 204 (498)
T ss_dssp CSCHHHHHHHHHHHHHHTTTCCCCGGGEEEESSHHHHHHHH---HHHHC-CCCGGGSEEEEEEESCCTHHHHHHHHTTCE
T ss_pred CCHHHHHHHHHHHHHHhcCCCCCCcccEEEcCCHHHHHHHH---HHHHc-CCCCCCCCEEEEeCCCchhHHHHHHHcCCE
Confidence 4655666677777777764 53 3444 445555555333 33221 111002358999999888888888899999
Q ss_pred EEEEcCCCC--CCCCHHHHHHHHHhcCC--CEEEEEEEcC-CCccccc--cCHHHHHHHHHHcCCEEEEEccccccccC-
Q 001989 704 IVSVGTDAK--GNINIEELRKAAEANRD--NLSTLMVTYP-STHGVYE--EGIDEICKIIHDNGGQVYMDGANMNAQVG- 775 (985)
Q Consensus 704 vv~v~~d~~--g~iD~e~L~~~i~~~~~--~t~~Vvv~~p-n~~G~i~--~di~eI~~la~~~galliVD~a~~~~~~~- 775 (985)
++.++++++ +.+|+++|++++++.+. ++++|++++| |++|.+. .++++|+++|+++|+++++|.++....-.
T Consensus 205 ~v~~~~~~~~~~~~d~~~le~~l~~~~~~~~~k~i~l~np~NPTG~v~s~~~l~~i~~la~~~~~~li~De~y~~~~~~~ 284 (498)
T 3ihj_A 205 QVNYYLDEENCWALNVNELRRAVQEAKDHCDPKVLCIINPGNPTGQVQSRKCIEDVIHFAWEEKLFLLADEVYQDNVYSP 284 (498)
T ss_dssp EEEEECBGGGTTBCCHHHHHHHHHHHTTTSEEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCCT
T ss_pred EEEeeccccccCCCCHHHHHHHHHhhhccCCCeEEEEECCCCCCCCcCCHHHHHHHHHHHHHcCcEEEEEcCccccccCC
Confidence 999998754 57999999999984221 5899999999 5799884 25888999999999999999998421110
Q ss_pred ---CCCCCc----cC------Cc-EEEeCCcccc-cccCCCCCCceEEEEE---cccccCcCCCCccccCCCCCCCCCCC
Q 001989 776 ---LTSPGY----IG------AD-VCHLNLHKTF-CIPHGGGGPGMGPIGV---KKHLAPFLPSHPVVSTGGIPAPEKSQ 837 (985)
Q Consensus 776 ---l~~pg~----~g------~D-i~~~s~hK~l-~~p~g~GGPg~G~i~~---~~~l~~~lp~~~~g~~~~~~~~~~~~ 837 (985)
...... ++ .. +++.|++|+| +.| |.++|++++ ++++.+.+.... .
T Consensus 285 ~~~~~s~~~~~~~~~~~~~~~~~~i~~~S~SK~~~G~~----G~R~G~~~~~~~~~~l~~~l~~~~-~------------ 347 (498)
T 3ihj_A 285 DCRFHSFKKVLYEMGPEYSSNVELASFHSTSKGYMGEC----GYRGGYMEVINLHPEIKGQLVKLL-S------------ 347 (498)
T ss_dssp TCCCCCHHHHHHHTCHHHHTTCCEEEEEESSSSTTCCS----SSCCEEEEEESCCHHHHHHHHHHH-H------------
T ss_pred CCCcCCHHHHHHHhcccccCceeEEEEeccccccccCc----ccceEEEEEecCCHHHHHHHHHHH-h------------
Confidence 000000 11 12 5677889998 333 678899984 555544332100 0
Q ss_pred CCCCCCCcchhhhHHHHHHHHHHH----------HhcHHHHHHHHHHHHHHHHHHHHHhhccCCeeecCCCCceeeEEEE
Q 001989 838 PLGTIAAAPWGSALILPISYTYIA----------MMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIV 907 (985)
Q Consensus 838 ~~~~i~s~~~g~~~~~~~a~a~l~----------~lg~eGl~~~~~~~~~~a~~l~~~L~~g~~l~~~~~~~~~~~~~iv 907 (985)
...+++..++.+ +.+++. .+ .+.+.++.++..++++++.+.|++..++.+..+.+..+ +.+
T Consensus 348 --~~~~~~~~~q~a----~~~~l~~~~~g~~~~~~~-~~~~~~~~~~l~~~~~~l~~~L~~~~g~~~~~p~gg~~--~~~ 418 (498)
T 3ihj_A 348 --VRLCPPVSGQAA----MDIVVNPPVAGEESFEQF-SREKESVLGNLAKKAKLTEDLFNQVPGIHCNPLQGAMY--AFP 418 (498)
T ss_dssp --HSCCCCHHHHHH----HHHHTCCCCTTSTTHHHH-HHHHHHHHHHHHHHHHHHHHHHHTSTTEECCCCCBSSE--ECC
T ss_pred --ccCCCCHHHHHH----HHHHhcCCccCcccHHHH-HHHHHHHHHHHHHHHHHHHHHHhcCCCcEecCCCeEEE--EEE
Confidence 011222222221 111111 00 01123445567788899999998632443333333332 122
Q ss_pred EecCc-c-----ccCCCCHHHH--HHHHHHCCCccCCC-CC---CCCCEEEEeccCCCCHHHHHHHHccCChhHHHHhhc
Q 001989 908 DLRGL-K-----NTAGIEPEDV--AKRLMDYGFHGPTM-SW---PVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRLK 975 (985)
Q Consensus 908 ~~~~~-~-----~~~g~~~~~v--~~~L~~~Gi~~~~~-~~---p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~~ 975 (985)
++..- + ...+.+.+++ .+.|.++||.+... .| +..+++|+++. .+++++++ +++.|++++++++
T Consensus 419 ~l~~p~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pG~~f~~~~~~~~~Ris~~--~~~e~l~~--~i~~L~~~~~~~~ 494 (498)
T 3ihj_A 419 RIFIPAKAVEAAQAHQMAPDMFYCMKLLEETGICVVPGSGFGQREGTYHFRMTIL--PPVEKLKT--VLQKVKDFHINFL 494 (498)
T ss_dssp EECCCHHHHHHHHHTTSCHHHHHHHHHHHHHCBCCEEGGGTCCCTTCCBEEEECC--SCHHHHHH--HHHHHHHHHHHHH
T ss_pred eccCchhhhHHHHhcCCCcHHHHHHHHHHHCCEEEEeCcccCCCCCCCEEEEEeC--CCHHHHHH--HHHHHHHHHHHHH
Confidence 22200 0 0013455553 45566789986432 22 22468999994 78999999 7788888877654
|
| >2q7w_A Aspartate aminotransferase; mechanism-based inhibitor, PLP, sadta, PH dependence; HET: KST PSZ PMP GOL; 1.40A {Escherichia coli} SCOP: c.67.1.1 PDB: 2qa3_A* 2qb2_A* 2qb3_A* 2qbt_A* 3qn6_A* 3pa9_A* 1aaw_A* 1amq_A* 1ams_A* 1arg_A* 1amr_A* 1art_A* 1asa_A* 1asd_A* 1ase_A* 1asl_A* 1asm_A* 1asn_A* 1c9c_A* 1cq6_A* ... | Back alignment and structure |
|---|
Probab=99.58 E-value=6.1e-15 Score=168.81 Aligned_cols=284 Identities=8% Similarity=0.040 Sum_probs=173.5
Q ss_pred HHHHHHHHHh---CC---Cccc-ee--cCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEE
Q 001989 636 NLGEWLCTIT---GF---DSFS-LQ--PNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVS 706 (985)
Q Consensus 636 e~~~~la~l~---G~---~~~~-~~--~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~ 706 (985)
++++.+++++ +. +... ++ .++|++|++.++.+++.+ .++++|+++.+.|..+...++..|++++.
T Consensus 73 ~lr~~la~~~~~~~~~~~~~~~v~~~~~~g~~~a~~~~~~~~~~~------~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~ 146 (396)
T 2q7w_A 73 EFGRCTQELLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKN------TSVKRVWVSNPSWPNHKSVFNSAGLEVRE 146 (396)
T ss_dssp HHHHHHHHHHHCTTCHHHHTTCEEEEEESHHHHHHHHHHHHHHHH------SCCCEEEEEESCCTHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHhcCCCCccccccEEEEecccchhhHHHHHHHHHHh------CCCCEEEEcCCCchhHHHHHHHcCCceEE
Confidence 5566666665 21 1222 33 677777776555544322 36789999888777777778889999999
Q ss_pred EcCC--CCCCCCHHHHHHHHHhcCCCEEEEEEEcCC-Cccccc--cCHHHHHHHHHHcCCEEEEEcccccc-ccC---CC
Q 001989 707 VGTD--AKGNINIEELRKAAEANRDNLSTLMVTYPS-THGVYE--EGIDEICKIIHDNGGQVYMDGANMNA-QVG---LT 777 (985)
Q Consensus 707 v~~d--~~g~iD~e~L~~~i~~~~~~t~~Vvv~~pn-~~G~i~--~di~eI~~la~~~galliVD~a~~~~-~~~---l~ 777 (985)
+|.+ +++.+|+++|++++++.+++++++++++|+ ++|.+. .++++|+++|+++|+++++|+++... .++ ..
T Consensus 147 ~~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~ 226 (396)
T 2q7w_A 147 YAYYDAENHTLDFDALINSLNEAQAGDVVLFHGCCHNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARGLEEDAE 226 (396)
T ss_dssp EECEETTTTEECHHHHHHHHTTCCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCHHHHTH
T ss_pred EecccCCCCCcCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecccccccCCccchhH
Confidence 9985 467899999999997433357888888884 689875 24778999999999999999987421 110 00
Q ss_pred CC---Ccc-CCcEEEeCCcccccccCCCCCCceEEEEE---cc----cccCcCCCCccccCCCCCCCCCCCCCCCCCCcc
Q 001989 778 SP---GYI-GADVCHLNLHKTFCIPHGGGGPGMGPIGV---KK----HLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAP 846 (985)
Q Consensus 778 ~p---g~~-g~Di~~~s~hK~l~~p~g~GGPg~G~i~~---~~----~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~ 846 (985)
.. ... ..++++.|++|+|+.| |.++|++++ ++ ++...+.... + ..+.. . +
T Consensus 227 ~~~~~~~~~~~~i~~~s~sK~~~~~----G~riG~~~~~~~~~~~~~~~~~~~~~~~-----------~-~~~~~-~-~- 287 (396)
T 2q7w_A 227 GLRAFAAMHKELIVASSYSXNFGLY----NERVGACTLVAADSETVDRAFSQMKAAI-----------R-ANYSN-P-P- 287 (396)
T ss_dssp HHHHHHHHCSCEEEEEECTTTTTCG----GGCCEEEEEECSSHHHHHHHHHHHHHHH-----------H-TTTSS-C-C-
T ss_pred HHHHHHhcCCcEEEEEecccccccc----ccccceEEEEcCCHHHHHHHHHHHHHHH-----------h-hccCC-C-C-
Confidence 00 111 2357788999998542 556899986 44 2332221000 0 00111 1 1
Q ss_pred hhhhHHHHHHHHHHHHh-----cHHHHHHHHHHHHHHHHHHHHHhhc-c----CCeeecCCCCceeeEEEEEecCccccC
Q 001989 847 WGSALILPISYTYIAMM-----GSKGLTEASKIAILNANYMAKRLEK-H----YPILFRGVNGTVAHEFIVDLRGLKNTA 916 (985)
Q Consensus 847 ~g~~~~~~~a~a~l~~l-----g~eGl~~~~~~~~~~a~~l~~~L~~-g----~~l~~~~~~~~~~~~~iv~~~~~~~~~ 916 (985)
.....++.++|... -.+.+++..++..++++++.+.|++ + +.+. .+.+..+ +.+.
T Consensus 288 ---~~~~~a~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~--~~~~~~~--~~~~-------- 352 (396)
T 2q7w_A 288 ---AHGASVVATILSNDALRAIWEQELTDMRQRIQRMRQLFVNTLQEKGANRDFSFI--IKQNGMF--SFSG-------- 352 (396)
T ss_dssp ---HHHHHHHHHHHTSHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHTTCCSCCTHH--HHCCSSE--EECC--------
T ss_pred ---cHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccee--cCCCceE--EEec--------
Confidence 11122222333211 0234555566678888999999986 3 3322 1112222 1122
Q ss_pred CCCHHHHHHHHHHCCCccCCCCCCCCCEEEEeccCCCCHHHHHHHHccCChhHH
Q 001989 917 GIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKSWTGIVMLSSPSEKK 970 (985)
Q Consensus 917 g~~~~~v~~~L~~~Gi~~~~~~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~ 970 (985)
.+...+.+.|.++||.+.. .+||+++.. |++|+++ +++.|+++
T Consensus 353 -~~~~~~~~~l~~~gv~v~~-------~~Ris~~~~-~~e~i~~--~~~~l~~~ 395 (396)
T 2q7w_A 353 -LTKEQVLRLREEFGVYAVA-------SGRVNVAGM-TPDNMAP--LCEAIVAV 395 (396)
T ss_dssp -CCHHHHHHHHHHHCEECCT-------TCEEEGGGC-CTTTHHH--HHHHHHHH
T ss_pred -CCHHHHHHHHHhcCeeecC-------CceEEEeec-CHHHHHH--HHHHHHhc
Confidence 2355677777788998742 379999853 8999999 66666654
|
| >3meb_A Aspartate aminotransferase; pyridoxal PHOS transferase, structural genomics, seattle structural genomi for infectious disease, ssgcid; HET: PLP; 1.90A {Giardia lamblia} | Back alignment and structure |
|---|
Probab=99.58 E-value=2.6e-14 Score=167.02 Aligned_cols=292 Identities=12% Similarity=0.064 Sum_probs=174.0
Q ss_pred HHHHHHHHHHh-CCC-----ccc-ee--cCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHH----HCC
Q 001989 635 NNLGEWLCTIT-GFD-----SFS-LQ--PNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAA----MCG 701 (985)
Q Consensus 635 ~e~~~~la~l~-G~~-----~~~-~~--~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~----~~G 701 (985)
.++++.+++++ |.+ ... ++ +++|++|+..+.. +.... .++++|+++++.|..+...++ ..|
T Consensus 97 ~~lr~~ia~~l~g~~~~~~~~~~i~~~~t~ggt~al~l~~~-~~~~~-----~~gd~Vlv~~p~~~~~~~~~~~~~~~~G 170 (448)
T 3meb_A 97 PLFLEAAQFLMFGKDSKAAQEGRIASCQSLSGTGSLHIGFE-FLHLW-----MPKAEFYMPSTTWPNHYGIYDKVFNKLK 170 (448)
T ss_dssp HHHHHHHHHHHHCTTCHHHHTTCEEEEEESHHHHHHHHHHH-HHHHH-----CTTCCEEEESSCCTHHHHHHHHHHCTTT
T ss_pred HHHHHHHHHHhcCCCccccCcCcEEEEECCcHHHHHHHHHH-HHHHh-----CCCCEEEECCCCCHhHHHHHHhhHHhCC
Confidence 35666677665 776 233 33 5666666643222 22211 367899999998988888888 899
Q ss_pred cEEEEEcC-CCC--CCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccc--cCHHHHHHHHHHcCCEEEEEccccc-ccc
Q 001989 702 MKIVSVGT-DAK--GNINIEELRKAAEANRDNLSTLMVTYP-STHGVYE--EGIDEICKIIHDNGGQVYMDGANMN-AQV 774 (985)
Q Consensus 702 ~~vv~v~~-d~~--g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~--~di~eI~~la~~~galliVD~a~~~-~~~ 774 (985)
++++.+|+ +++ +.+|+++|++++++.+++++++++++| |++|.+. .++++|+++|+++|+++++|+++.. +.+
T Consensus 171 ~~v~~~~~~~~~~~~~~d~e~l~~~l~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~l~~~~~~~li~Deay~~~~~~ 250 (448)
T 3meb_A 171 VPYKEYTYLRKDGELEIDFSNTKKDIQSAPEKSIFLFHACAHNPSGIDFTEAQWKELLPIMKEKKHIAFFDSAYQGFATG 250 (448)
T ss_dssp SCCEEECCBCTTSCSSBCHHHHHHHHHHSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTSSS
T ss_pred CeEEEEeccccccCCCcCHHHHHHHHHhCCCCcEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHCCCEEEEecccccccCC
Confidence 99999998 664 789999999999854456788888888 5789885 1466799999999999999998631 111
Q ss_pred CCC-C-C--C---ccCCc-EEEeCCcccccccCCCCCCceEEE--EE--------c-c----cccCcCCCCccccCCCCC
Q 001989 775 GLT-S-P--G---YIGAD-VCHLNLHKTFCIPHGGGGPGMGPI--GV--------K-K----HLAPFLPSHPVVSTGGIP 831 (985)
Q Consensus 775 ~l~-~-p--g---~~g~D-i~~~s~hK~l~~p~g~GGPg~G~i--~~--------~-~----~l~~~lp~~~~g~~~~~~ 831 (985)
+.. . + . ..+.+ +++.|+||.|+.| |.++|++ ++ . + .+...+....
T Consensus 251 ~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~----G~RiG~l~~v~~~~~~~~~~~~~~~~~l~~~l~~~~-------- 318 (448)
T 3meb_A 251 SFEADAFAVRMFVDAGVEVLVAQSFSKNFGLY----GERIGCLHVVHAGVEGSVEKNKALSAAMVSGMTLQI-------- 318 (448)
T ss_dssp CHHHHTHHHHHHHHTTCCEEEEEECTTTSCCG----GGCCEEEEEECCCCSSSHHHHHHHHHHHHHHHHHHH--------
T ss_pred CcccCchhHHHHhhcCCcEEEEecccccCCCc----cccceeeeeeeccccccccCCHHHHHHHHHHHHHHH--------
Confidence 100 0 0 0 12334 6688999998643 5678987 55 3 3 3332221000
Q ss_pred CCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhc-----HHHHHHHHHHHHHHHHHHHHHhhc-cC-C------eeecCCC
Q 001989 832 APEKSQPLGTIAAAPWGSALILPISYTYIAMMG-----SKGLTEASKIAILNANYMAKRLEK-HY-P------ILFRGVN 898 (985)
Q Consensus 832 ~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg-----~eGl~~~~~~~~~~a~~l~~~L~~-g~-~------l~~~~~~ 898 (985)
...+++.+. .++ .++.+.|.... .+.+.+..++..++++++.+.|++ ++ . +....+.
T Consensus 319 ----~~~~~~~~~--~~~----~a~~~~l~~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~~~~~~~~ 388 (448)
T 3meb_A 319 ----RKTWSMSAI--HGA----YIVQVIVHDKRLLQMFYDNVKEMSARIHRMRSLLHASLAKRKTPGPGSKGTWDHILTA 388 (448)
T ss_dssp ----HTTTSSCCH--HHH----HHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSTTTCCCTHHHHC
T ss_pred ----hcccCCccH--HHH----HHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcCcccccceeCCC
Confidence 001112211 111 11112221100 133566667778888999999976 22 1 1111111
Q ss_pred CceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCCCCCCCEEEEeccCCCCHHHHHHHHccCChhHHHHhh
Q 001989 899 GTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRL 974 (985)
Q Consensus 899 ~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~ 974 (985)
+.. +++ . +.+.+.+...|.++||.+..- ..||++.. .+.++|++ +++.|+++++++
T Consensus 389 ~g~---~~~--~------~~~~~~~~~ll~~~gV~v~~G------~gRis~a~-~~~~~i~~--~~~~l~~~l~~~ 444 (448)
T 3meb_A 389 IGM---FTF--T------GLTPEHVDYLKEKWSIYLVKA------GGRMSMCG-LTESNCDY--VAEAIHDAVTKL 444 (448)
T ss_dssp CSS---EEE--C------CCCHHHHHHHHHHHCEEECSG------GGEEEGGG-CCTTTHHH--HHHHHHHHHHHS
T ss_pred ceE---EEe--c------CCCHHHHHHHHHhCCEEEeCC------CcEEEEec-CCHHHHHH--HHHHHHHHHHhc
Confidence 111 111 1 334444444446679987431 23898864 35667999 888898888754
|
| >4adb_A Succinylornithine transaminase; transferase, PLP enzymes, aminotransferase; HET: PLP; 2.20A {Escherichia coli} PDB: 4adc_A* 4add_A* 4ade_A | Back alignment and structure |
|---|
Probab=99.58 E-value=2.4e-13 Score=156.03 Aligned_cols=276 Identities=14% Similarity=0.098 Sum_probs=173.6
Q ss_pred HHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhh----c-CCCCEEEEcCCCC-hhHHHHHHHhh--------c
Q 001989 212 SLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQ----K-GKKKTFIIASNCH-PQTIDICITRA--------D 277 (985)
Q Consensus 212 ~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~----~-~~g~~Vlv~~~~H-~s~~~~~~~~a--------~ 277 (985)
...++++.+++++|.+ ++.+++|||.+++.++.+.... . .++++||+.+..| ......+.... .
T Consensus 82 ~~~~l~~~la~~~~~~--~v~~~~gg~~a~~~al~~~~~~~~~~~~~g~~~vi~~~~~y~~~~~~~~~~~~~~~~~~~~~ 159 (406)
T 4adb_A 82 PVLRLAKKLIDATFAD--RVFFCNSGAEANEAALKLARKFAHDRYGSHKSGIVAFKNAFHGRTLFTVSAGGQPAYSQDFA 159 (406)
T ss_dssp HHHHHHHHHHHHSSCS--EEEEESSHHHHHHHHHHHHHHHHHHHTCTTCCEEEEETTCCCCSSHHHHHHSSCGGGTGGGC
T ss_pred HHHHHHHHHHhhCCCC--eEEEeCcHHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCCcHHHhhccCCccccccCC
Confidence 3456788999999877 6889999998888777544210 0 1447887766544 44444432211 0
Q ss_pred CCCeEEEEe---Cchhhhc-cCCCEeEEEEEcC-CCCee-----eccHHHHHHHHHhCCcEEEEEecCc-cccCCCCC--
Q 001989 278 GFDIKVVVS---DLKDIDY-KSGDVCGVLVQYP-GTEGE-----VLDYGDFIKNAHANGVKVVMATDLL-ALTILKPP-- 344 (985)
Q Consensus 278 ~~gi~v~~v---~~~~l~~-l~~~t~~V~v~~p-n~~G~-----v~di~~I~~~a~~~galliV~a~~~-~lg~l~~~-- 344 (985)
..+..+..+ |+++|++ +++++++|+++ | |.+|. .+++++|.++|+++|+++++|. .. .++....+
T Consensus 160 ~~~~~~~~~~~~d~~~l~~~l~~~~~~v~~~-p~np~g~~~~~~~~~l~~l~~l~~~~~~~li~De-~~~~~~~~g~~~~ 237 (406)
T 4adb_A 160 PLPADIRHAAYNDINSASALIDDSTCAVIVE-PIQGEGGVVPASNAFLQGLRELCNRHNALLIFDE-VQTGVGRTGELYA 237 (406)
T ss_dssp SCCSSEEEECTTCHHHHHTTCSTTEEEEEEC-SEETTTTSEECCHHHHHHHHHHHHHTTCEEEEEC-TTTTTTTTSSSSH
T ss_pred CCCCCceEeCCCcHHHHHHHhcCCeEEEEEe-CCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEec-cccCCCccchhHH
Confidence 111344444 4466777 78899999998 6 66653 3589999999999999999953 33 23222111
Q ss_pred ---CcccceEEEecCccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCcc
Q 001989 345 ---GELGADIVVGSAQRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNIC 421 (985)
Q Consensus 345 ---~~~GaDi~v~s~k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~ 421 (985)
...+.|+++. +|.|+ | |-.+|++++++++.+.+..... ..|.+.
T Consensus 238 ~~~~~~~~d~~t~-sK~~~-~----G~r~G~~~~~~~~~~~~~~~~~--------------------------~~~~~~- 284 (406)
T 4adb_A 238 YMHYGVTPDLLTT-AKALG-G----GFPVGALLATEECARVMTVGTH--------------------------GTTYGG- 284 (406)
T ss_dssp HHHHTCCCSEEEE-CGGGG-T----TSCCEEEEECHHHHHTCCTTSS--------------------------CCSSTT-
T ss_pred HHhcCCCCCEEEe-chhhc-C----CCCeEEEEEcHHHHhhhccCCc--------------------------CCCCCC-
Confidence 1234688755 68885 2 2346899999998877632110 011111
Q ss_pred chhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCC-eEEcCC--CCcceEEEecC-----CHHHHHHHHH
Q 001989 422 TAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGT-VEVQGL--PFFDTVKVKCA-----DAHAIASAAY 493 (985)
Q Consensus 422 t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~-~~~~~~--~~~~~~~~~~~-----~~~~v~~~L~ 493 (985)
++....+..++ +..+.. +++.++..++.+++++.|++++. +.+... ....-+.+..+ ...++.+.|.
T Consensus 285 ~~~~~~a~~~~--l~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~ 359 (406)
T 4adb_A 285 NPLASAVAGKV--LELINT---PEMLNGVKQRHDWFVERLNTINHRYGLFSEVRGLGLLIGCVLNADYAGQAKQISQEAA 359 (406)
T ss_dssp CHHHHHHHHHH--HHHHSS---HHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEETTEEEEEECTTTTTCHHHHHHHHH
T ss_pred CHHHHHHHHHH--HHHHHh---cCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEEEEEEEEEEEeCCcHHHHHHHHHHHH
Confidence 11112222222 344433 57778888899999999887530 111100 01112333332 2788999999
Q ss_pred HcCceeeeecCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 494 KIEMNLRVVDSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 494 ~~GI~~~~~~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
++||.+.....+.+|++++..+|++|+++++++|.+
T Consensus 360 ~~gi~v~~~~~~~iRi~~~~~~~~e~i~~~~~~l~~ 395 (406)
T 4adb_A 360 KAGVMVLIAGGNVVRFAPALNVSEEEVTTGLDRFAA 395 (406)
T ss_dssp HTTEECEESSTTEEEECCCTTCCHHHHHHHHHHHHH
T ss_pred HCCcEEeecCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 999998775578999999999999999999999974
|
| >2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; 2.30A {Pseudomonas stutzeri} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.9e-13 Score=159.86 Aligned_cols=296 Identities=14% Similarity=0.092 Sum_probs=171.5
Q ss_pred HHHHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcC-CCCcccHHHHH----------HC
Q 001989 632 EMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPV-SAHGTNPATAA----------MC 700 (985)
Q Consensus 632 ~~~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~-~~Hg~~~~~a~----------~~ 700 (985)
+...++.++++++++-....++.++|++|+++++.++|.+. ++++||+.+ .+||....... ..
T Consensus 97 ~~~~~la~~l~~~~~~~~~v~~~~gg~eA~~~al~~ar~~~------~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~ 170 (453)
T 2cy8_A 97 PLEVRWAERIVAAFPSIRKLRFTGSGTETTLLALRVARAFT------GRRMILRFEGHYHGWHDFSASGYNSHFDGQPAP 170 (453)
T ss_dssp HHHHHHHHHHHHHCTTCSEEEEESCHHHHHHHHHHHHHHHH------CCCEEEEECC-----------------------
T ss_pred HHHHHHHHHHHhhCCCCCEEEEeCCHHHHHHHHHHHHHHhh------CCCEEEEEcCCcCCCchhhHhhcCCccCCCcCC
Confidence 34567788888887512234667889998887777766542 345676654 56765433221 12
Q ss_pred CcE------EEEEcCCCCCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccC----HHHHHHHHHHcCCEEEEEccc
Q 001989 701 GMK------IVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEG----IDEICKIIHDNGGQVYMDGAN 769 (985)
Q Consensus 701 G~~------vv~v~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~d----i~eI~~la~~~galliVD~a~ 769 (985)
|+. +..+|. .|+++|+++++++.+++++|+++.. +.+|.+. + +++|.++|+++|+++|+|++|
T Consensus 171 g~~~~~~~~~~~~~~-----~d~~~le~~l~~~~~~~~~vi~ep~~~~tG~~~-~~~~~l~~l~~l~~~~g~~lI~DEv~ 244 (453)
T 2cy8_A 171 GVLPETTANTLLIRP-----DDIEGMREVFANHGSDIAAFIAEPVGSHFGVTP-VSDSFLREGAELARQYGALFILDEVI 244 (453)
T ss_dssp -----CGGGEEEECT-----TCHHHHHHHHHHHGGGEEEEEECSSEHHHHTEE-CCHHHHHHHHHHHHHTTCEEEEECTT
T ss_pred CCCccccCceeecCC-----CCHHHHHHHHHhcCCCEEEEEECCCCCCCCCcC-CCHHHHHHHHHHHHHcCCEEEEecCc
Confidence 432 444554 3899999999743346777766543 3478776 6 999999999999999999998
Q ss_pred cccccCCCCCC-----ccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCC
Q 001989 770 MNAQVGLTSPG-----YIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAA 844 (985)
Q Consensus 770 ~~~~~~l~~pg-----~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s 844 (985)
. ++ .....+ ...+|++++ +|+|+ +|.++|++++++++.+.+.....+. . ...+
T Consensus 245 ~-g~-~~g~~~~~~~~~~~~di~s~--sK~l~-----~G~~~G~v~~~~~~~~~l~~~~~~~-----------~--~~~~ 302 (453)
T 2cy8_A 245 S-GF-RVGNHGMQALLDVQPDLTCL--AKASA-----GGLPGGILGGREDVMGVLSRGSDRK-----------V--LHQG 302 (453)
T ss_dssp T-TT-TTCTTHHHHHHTCCCSEEEE--EGGGG-----TTSSCEEEEECHHHHTTSSSCC---------------------
T ss_pred c-cc-ccCchhhhHHhCCCCcEEEE--Chhhh-----CCcceEEEechHHHHHHhccccCCC-----------c--eeCC
Confidence 4 22 111111 123688754 59884 3567899999988766553210000 0 0001
Q ss_pred cchhhhHHHHHHHHHHHH-hcHHHHHHHHHHHHHHHHHHHHHhhcc---CCee--ecCCCCceeeEEEEEecC-----c-
Q 001989 845 APWGSALILPISYTYIAM-MGSKGLTEASKIAILNANYMAKRLEKH---YPIL--FRGVNGTVAHEFIVDLRG-----L- 912 (985)
Q Consensus 845 ~~~g~~~~~~~a~a~l~~-lg~eGl~~~~~~~~~~a~~l~~~L~~g---~~l~--~~~~~~~~~~~~iv~~~~-----~- 912 (985)
++.+++..++++.+.+.. + .+++ .++..+++++++++|++. +.+. ..+ .+.+ +.+.++. .
T Consensus 303 t~~~n~~~~aa~~aal~~~~-~~~~---~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~-~g~~---~~i~~~~~~~~~~~ 374 (453)
T 2cy8_A 303 TFTGNPITAAAAIAAIDTIL-EDDV---CAKINDLGQFAREAMNHLFARKGLNWLAYG-RFSG---FHLMPGLPPNTTDT 374 (453)
T ss_dssp -CCCCHHHHHHHHHHHHHHH-HTTH---HHHHHHHHHHHHHHHHHHHHHTTCCEEEEC-CTTE---EEEEETSCTTCCCC
T ss_pred CCCCCHHHHHHHHHHHHHHh-hhhH---HHHHHHHHHHHHHHHHHHHhhCCCcEEEEE-eeeE---EEEEEecccccccc
Confidence 112234445555566666 5 4433 446677788888888652 2221 222 2222 2344431 0
Q ss_pred -----cc---cCCCCHHHHHHHHHHCCCccCCCCCCCCCEEEEeccCCCCHHHHHHHHccCChhHHHHhhccCC
Q 001989 913 -----KN---TAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRLKMGR 978 (985)
Q Consensus 913 -----~~---~~g~~~~~v~~~L~~~Gi~~~~~~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~~~~~ 978 (985)
.. .......++.+.|.++||.+... +.++ ++..+|++||++ +++.|++++++++..-
T Consensus 375 ~~~~~~~~~~~~~~~~~~l~~~l~~~Gv~v~~~-----~~~~--l~~~~t~~~i~~--~l~~l~~~l~~~~~~~ 439 (453)
T 2cy8_A 375 GSITRAEVARPDVKMIAAMRMALILEGVDIGGR-----GSVF--LSAQHEREHVEH--LVTTFDRVLDRLADEN 439 (453)
T ss_dssp HHHHTTCSCCCCHHHHHHHHHHHHHTTEECBTT-----TEEE--CCTTCCHHHHHH--HHHHHHHHHHHHHHTT
T ss_pred ccccccccccccHHHHHHHHHHHHHCCeEEeCC-----CCEE--eeccCCHHHHHH--HHHHHHHHHHHHHhCC
Confidence 00 00012567999999999988321 3444 567899999999 8899999988776543
|
| >3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal 5' phosphat external aldimine, chloroplast, pyridox phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB: 3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A 3eia_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=1.1e-13 Score=160.71 Aligned_cols=316 Identities=15% Similarity=0.141 Sum_probs=190.1
Q ss_pred cCCCCCCCCCcHHHHHHHHhCC------ccccccCCChhhHhhhHHHHHHHHHHHHHHhc----CCCCcceeeccchHHH
Q 001989 171 IGMGYYNTHVPPVILRNIMENP------AWYTQYTPYQAEIAQGRLESLLNFQTMIADLT----GLPMSNASLLDEGTAA 240 (985)
Q Consensus 171 lG~g~y~~~~p~~v~~~i~~~~------~~~t~~~pyq~e~sqg~l~~i~e~q~~ia~L~----g~~~~~~sl~~~~ta~ 240 (985)
++.|.|+...|+.+.+++.+.- ..+..|+|.+ | ..++++.+|+++ +.++.++.+++|++++
T Consensus 61 l~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~y~~~~-----g----~~~l~~~ia~~~~~~~~~~~~~i~~t~G~~~a 131 (432)
T 3ei9_A 61 LGIGDTTEPIPEVITSAMAKKAHELSTIEGYSGYGAEQ-----G----AKPLRAAIAKTFYGGLGIGDDDVFVSDGAKCD 131 (432)
T ss_dssp CSSCCCCSCCCHHHHHHHHHHHHHTTSTTTCCCCCCTT-----C----CHHHHHHHHHHHHTTTTCCGGGEEEESCHHHH
T ss_pred ccCCCCCCCCCHHHHHHHHHHHhcccccCCccCCCCCC-----C----CHHHHHHHHHHHHccCCCCcceEEECCChHHH
Confidence 4666666566666654443211 1122343321 1 234566777775 7788889999999988
Q ss_pred HHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCC---------eEEEEeCch---hhhc-c--CCCEeEEEEEc
Q 001989 241 AEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFD---------IKVVVSDLK---DIDY-K--SGDVCGVLVQY 305 (985)
Q Consensus 241 ~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~g---------i~v~~v~~~---~l~~-l--~~~t~~V~v~~ 305 (985)
+..+ .++ . ++||+|+++...|+++...++.. ...| .+++.++.+ ++.. + .+++++|++.+
T Consensus 132 l~~l-~~l-~--~~gd~Vl~~~p~y~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~l~~ 206 (432)
T 3ei9_A 132 ISRL-QVM-F--GSNVTIAVQDPSYPAYVDSSVIM-GQTGQFNTDVQKYGNIEYMRCTPENGFFPDLSTVGRTDIIFFCS 206 (432)
T ss_dssp HHHH-HHH-H--CTTCCEEEEESCCTHHHHHHHHH-TCSCCEETTTTEETTCEEEECCGGGTTSCCGGGCCCCSEEEEES
T ss_pred HHHH-HHH-c--CCCCEEEEeCCCCHHHHHHHHHc-CCcccccccccccCceEEeccCcccCCcCChhhCCCCCEEEEeC
Confidence 7753 332 2 38899999999999999888653 2222 234444432 1221 2 35789999999
Q ss_pred C-CCCeeec---cHHHHHHHHHhCCcEEEEEecCccccCCC--------CCCcccceEEEecC-ccccccCCCCCCcEEE
Q 001989 306 P-GTEGEVL---DYGDFIKNAHANGVKVVMATDLLALTILK--------PPGELGADIVVGSA-QRFGVPMGYGGPHAAF 372 (985)
Q Consensus 306 p-n~~G~v~---di~~I~~~a~~~galliV~a~~~~lg~l~--------~~~~~GaDi~v~s~-k~lg~P~~~GGP~~G~ 372 (985)
| |++|.+. ++++|+++|+++|+++++| +.++..... .++..+.+|+++|. |.|+. .|-.+|+
T Consensus 207 p~NPtG~~~~~~~l~~l~~la~~~~~~li~D-ea~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~----~G~r~G~ 281 (432)
T 3ei9_A 207 PNNPTGAAATREQLTQLVEFAKKNGSIIVYD-SAYAMYMSDDNPRSIFEIPGAEEVAMETASFSNYAGF----TGVRLGW 281 (432)
T ss_dssp SCTTTCCCCCHHHHHHHHHHHHHHTCEEEEE-CTTGGGCCSSCCSSGGGSTTGGGTEEEEEESHHHHCT----TTTCCEE
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHcCcEEEEc-cchHhhccCCCCCChhhcCCCCCeEEEEecchhccCC----cccceEE
Confidence 8 7899876 5778888899999999995 333321111 11234667999998 88863 2345789
Q ss_pred EEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHH-HHHHhCcchHHHHHHHHH
Q 001989 373 LATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAM-YAVYHGPEGLKTIAQRVH 451 (985)
Q Consensus 373 l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~-~l~~~g~~Gl~~i~~~~~ 451 (985)
++++++++..- ... + + +..++.......+. . ..+..++. .+...+.+.++++.++..
T Consensus 282 ~~~~~~~~~~~------------~~~-----~--~-~~~~~~~~~~~~~~-~-~~~~~a~~~~l~~~~~~~~~~~~~~~~ 339 (432)
T 3ei9_A 282 TVIPKKLLYSD------------GFP-----V--A-KDFNRIICTCFNGA-S-NISQAGALACLTPEGLEAMHKVIGFYK 339 (432)
T ss_dssp EECCTTCBCTT------------SCB-----H--H-HHHHHHHHHSCCCS-C-HHHHHHHHHHSSHHHHHHHHHHHHHHH
T ss_pred EEEChHHhhcc------------hHH-----H--H-HHHHHHhccccCCC-C-HHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 88876652100 000 0 0 00000000011111 1 11222222 111112245678888999
Q ss_pred HHHHHHHHHHhcCCCeEEcCCCCcceEEEecCC--HHHHHHHHHHc-Cceeeee------cCCeEEEEeccCCCHHHHHH
Q 001989 452 GLAGTFALGLKKLGTVEVQGLPFFDTVKVKCAD--AHAIASAAYKI-EMNLRVV------DSNTVTASFDETTTLEDVDK 522 (985)
Q Consensus 452 ~~a~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~--~~~v~~~L~~~-GI~~~~~------~~~~lris~t~~~t~edId~ 522 (985)
++.+++++.|+++| +++..+....-+.+.+++ ..++.+.|.++ ||.+... ..+.+|+++ .+++++|++
T Consensus 340 ~~~~~l~~~L~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~~g~~f~~~~~~~iRis~--~~~~e~l~~ 416 (432)
T 3ei9_A 340 ENTNIIIDTFTSLG-YDVYGGKNAPYVWVHFPNQSSWDVFAEILEKTHVVTTPGSGFGPGGEGFVRVSA--FGHRENILE 416 (432)
T ss_dssp HHHHHHHHHHHHTT-CCEEECSSSSEEEEECTTSCHHHHHHHHHHHHCEECEEGGGGCGGGTTEEEEEC--CSCHHHHHH
T ss_pred HHHHHHHHHHHHCC-ceecCCCcceEEEEECCCCCHHHHHHHHHHHCCEEEeCchHhCCCCCCEEEEEe--cCCHHHHHH
Confidence 99999999999987 776532211224455554 77888887764 9987542 257899997 569999999
Q ss_pred HHHHHhCC
Q 001989 523 LFIVFAGG 530 (985)
Q Consensus 523 li~aL~~~ 530 (985)
.++.|++.
T Consensus 417 ~l~rl~~~ 424 (432)
T 3ei9_A 417 ACRRFKQL 424 (432)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999754
|
| >1vp4_A Aminotransferase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.57 E-value=7.6e-14 Score=161.77 Aligned_cols=271 Identities=14% Similarity=0.068 Sum_probs=178.9
Q ss_pred HHHHHHHHhc----C---CCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeC
Q 001989 215 NFQTMIADLT----G---LPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSD 287 (985)
Q Consensus 215 e~q~~ia~L~----g---~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~ 287 (985)
++++.+|+++ | .++.++.+++|+|.++++++.++. ++||+|+++...|+++...++ ..|.+++.++
T Consensus 89 ~lr~~la~~l~~~~g~~~~~~~~v~~t~G~~~al~~~~~~l~---~~gd~Vl~~~p~y~~~~~~~~----~~g~~~~~v~ 161 (425)
T 1vp4_A 89 VLKQQILKLLERMYGITGLDEDNLIFTVGSQQALDLIGKLFL---DDESYCVLDDPAYLGAINAFR----QYLANFVVVP 161 (425)
T ss_dssp HHHHHHHHHHHHHHCCCSCCGGGEEEEEHHHHHHHHHHHHHC---CTTCEEEEEESCCHHHHHHHH----TTTCEEEEEE
T ss_pred HHHHHHHHHHHhccCCCCCCcccEEEeccHHHHHHHHHHHhC---CCCCEEEEeCCCcHHHHHHHH----HcCCEEEEec
Confidence 3556666666 8 556789899999988877776552 378999999999999888764 3577777764
Q ss_pred c-------hhhhc-cCC--------CEeEEE-EEcC-CCCeeecc---HHHHHHHHHhCCcEEEEEecCccccCC-C---
Q 001989 288 L-------KDIDY-KSG--------DVCGVL-VQYP-GTEGEVLD---YGDFIKNAHANGVKVVMATDLLALTIL-K--- 342 (985)
Q Consensus 288 ~-------~~l~~-l~~--------~t~~V~-v~~p-n~~G~v~d---i~~I~~~a~~~galliV~a~~~~lg~l-~--- 342 (985)
. ++|++ +++ ++++|+ +.+| |.+|.+.+ +++|+++|+++|+++++| +..+.... .
T Consensus 162 ~~~~~~d~~~l~~~l~~~~~~~~~~~~~~v~~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~D-e~~~~~~~~g~~~ 240 (425)
T 1vp4_A 162 LEDDGMDLNVLERKLSEFDKNGKIKQVKFIYVVSNFHNPAGVTTSLEKRKALVEIAEKYDLFIVED-DPYGALRYEGETV 240 (425)
T ss_dssp EETTEECHHHHHHHHHHHHHTTCGGGEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEE-CSSTTCBCSSCCC
T ss_pred cCCCCCCHHHHHHHHHhhhhcccCCCceEEEECCCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEE-CCCccccCCCCCC
Confidence 3 45655 544 788885 5677 78998865 678999999999999995 33332221 1
Q ss_pred -CC---CcccceEEEecC-ccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccC
Q 001989 343 -PP---GELGADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKAT 417 (985)
Q Consensus 343 -~~---~~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~at 417 (985)
+. +..+.+++++|. |.|+ | |--+|++++++++++.+... +. ..
T Consensus 241 ~~~~~~~~~~~~i~~~s~sK~~~-~----G~r~G~~~~~~~~~~~l~~~-------------------------~~-~~- 288 (425)
T 1vp4_A 241 DPIFKIGGPERVVLLNTFSKVLA-P----GLRIGMVAGSKEFIRKIVQA-------------------------KQ-SA- 288 (425)
T ss_dssp CCHHHHHCTTTEEEEEESTTTTC-G----GGCEEEEECCHHHHHHHHHH-------------------------HH-HH-
T ss_pred cCHHHhCCCCCEEEEeccccccc-c----ccceEEEeeCHHHHHHHHHH-------------------------hh-hh-
Confidence 11 123568888887 7664 2 22369999998877655100 00 00
Q ss_pred CCccch-hHHHHHHHHHHHHHhC-cchHHHHHHHHHHHHHHHHHHHhcC-C---CeEEcCCCCcceEEEecCC---HHHH
Q 001989 418 SNICTA-QALLANMAAMYAVYHG-PEGLKTIAQRVHGLAGTFALGLKKL-G---TVEVQGLPFFDTVKVKCAD---AHAI 488 (985)
Q Consensus 418 sni~t~-~~l~a~~aa~~l~~~g-~~Gl~~i~~~~~~~a~~l~~~L~~~-g---~~~~~~~~~~~~~~~~~~~---~~~v 488 (985)
..+++ ....+..++ +.... .+.++++.++..++.+++.+.|++. + ++++..+....-+.+..+. ..++
T Consensus 289 -~~~~~~~~~~a~~~~--l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~l 365 (425)
T 1vp4_A 289 -DLCSPAITHRLAARY--LERYDLLEQLKPTIELYRRKRTVMLNALEEYFSDIPGVKWVKSEGGLFIWLTLPEGFDTWEM 365 (425)
T ss_dssp -HSSCCHHHHHHHHHH--HHHSCHHHHTHHHHHHHHHHHHHHHHHHHHHSTTSTTCEECCCSBSSEEEEECCTTCCTTTT
T ss_pred -cCCCCHHHHHHHHHH--HhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceEEecCCccEEEEEEcCCCCCHHHH
Confidence 01111 112222222 22211 3456778888889999999999875 1 3777532212234455542 6778
Q ss_pred HHHHHHcCceeeee--------cCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 489 ASAAYKIEMNLRVV--------DSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 489 ~~~L~~~GI~~~~~--------~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
.+.|.++||.+... ..+.+|++++.. |++|+++++++|.+
T Consensus 366 ~~~l~~~gi~v~~g~~f~~~~~~~~~iRis~~~~-~~e~i~~~l~~l~~ 413 (425)
T 1vp4_A 366 FEYAKRKKVFYVPGRVFKVYDEPSPSMRLSFCLP-PDEKIVEGIKRLRE 413 (425)
T ss_dssp HHHHHHHTEECEEGGGGCTTCCCCSEEEEECSSS-CHHHHHHHHHHHHH
T ss_pred HHHHHHCCCEEECchhhcCCCCCCCeEEEEeCCC-CHHHHHHHHHHHHH
Confidence 88999889987542 247899999875 89999999999974
|
| >1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=3.6e-13 Score=154.29 Aligned_cols=271 Identities=7% Similarity=-0.024 Sum_probs=179.4
Q ss_pred HHHHHHHHh----cC--CCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc
Q 001989 215 NFQTMIADL----TG--LPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL 288 (985)
Q Consensus 215 e~q~~ia~L----~g--~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~ 288 (985)
++++.+|++ .| .++.++.+++|+|.++++++.++. ++||+|+++...|+++...++ ..|.+++.++.
T Consensus 70 ~l~~~la~~l~~~~g~~~~~~~v~~t~g~~~a~~~~~~~l~---~~gd~vl~~~p~~~~~~~~~~----~~g~~~~~~~~ 142 (399)
T 1c7n_A 70 EYKKTVKKWMKDRHQWDIQTDWIINTAGVVPAVFNAVREFT---KPGDGVIIITPVYYPFFMAIK----NQERKIIECEL 142 (399)
T ss_dssp HHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHHHHHHHHC---CTTCEEEECSSCCTHHHHHHH----TTTCEEEECCC
T ss_pred HHHHHHHHHHHHHhCCCCChhhEEEcCCHHHHHHHHHHHhc---CCCCEEEEcCCCcHhHHHHHH----HcCCEEEeccc
Confidence 345555555 47 566789999999988887776652 378999999999999888764 35777776654
Q ss_pred -----------hhhhc-cC-CCEeEEEEEcC-CCCeeecc---HHHHHHHHHhCCcEEEEEecCccccCC-----CCCCc
Q 001989 289 -----------KDIDY-KS-GDVCGVLVQYP-GTEGEVLD---YGDFIKNAHANGVKVVMATDLLALTIL-----KPPGE 346 (985)
Q Consensus 289 -----------~~l~~-l~-~~t~~V~v~~p-n~~G~v~d---i~~I~~~a~~~galliV~a~~~~lg~l-----~~~~~ 346 (985)
++|++ ++ +++++|++.+| |.+|.+.| +++|+++|+++|+++++|. ..+.... .+...
T Consensus 143 ~~~~g~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De-~~~~~~~~g~~~~~~~~ 221 (399)
T 1c7n_A 143 LEKDGYYTIDFQKLEKLSKDKNNKALLFCSPHNPVGRVWKKDELQKIKDIVLKSDLMLWSDE-IHFDLIMPGYEHTVFQS 221 (399)
T ss_dssp EEETTEEECCHHHHHHHHTCTTEEEEEEESSBTTTTBCCCHHHHHHHHHHHHHSSCEEEEEC-TTTTCBCTTCCCCCGGG
T ss_pred ccCCCCEEEcHHHHHHHhccCCCcEEEEcCCCCCCCcCcCHHHHHHHHHHHHHcCCEEEEEc-cccccccCCCCcccHHH
Confidence 34555 65 78999999888 77999987 9999999999999999953 3332111 11111
Q ss_pred -----ccceEEEecC-ccccccCCCCCCcEEEEEEc-hhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCC
Q 001989 347 -----LGADIVVGSA-QRFGVPMGYGGPHAAFLATS-QEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSN 419 (985)
Q Consensus 347 -----~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~-~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsn 419 (985)
.+.+++++|. |.|+.| |..+|+++++ +++.+.+.... ..+ .-++.|
T Consensus 222 ~~~~~~~~~i~~~s~sK~~~~~----G~r~G~~~~~~~~~~~~l~~~~----------~~~-------------~~~~~~ 274 (399)
T 1c7n_A 222 IDEQLADKTITFTAPSKTFNIA----GMGMSNIIIKNPDIRERFTKSR----------DAT-------------SGMPFT 274 (399)
T ss_dssp SCHHHHTTEEEEECSHHHHTCG----GGCCEEEECCCHHHHHHHHHHH----------HHT-------------TCCCCC
T ss_pred cCccccCcEEEEEeChhhcccc----chheEEEEECCHHHHHHHHHHH----------hhc-------------ccCCCC
Confidence 3567888887 877532 2346899986 45665541000 000 001111
Q ss_pred ccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhc-CCCeEEcCCCCcceE-EEecC----CHHHHHHHHH
Q 001989 420 ICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKK-LGTVEVQGLPFFDTV-KVKCA----DAHAIASAAY 493 (985)
Q Consensus 420 i~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~-~g~~~~~~~~~~~~~-~~~~~----~~~~v~~~L~ 493 (985)
. ....+..+++ . .+.+.++++.++..++.+++.+.|++ ++++++..+. ..-+ .+..+ +..++.+.|.
T Consensus 275 ~---~~~~a~~~~l--~-~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~ 347 (399)
T 1c7n_A 275 T---LGYKACEICY--K-ECGKWLDGCIKVIDKNQRIVKDFFEVNHPEIKAPLIE-GTYLQWIDFRALKMDHKAMEEFMI 347 (399)
T ss_dssp H---HHHHHHHHHH--H-HCHHHHHHHHHHHHHHHHHHHHHHHHHCTTSBCCCCS-BSSEEEEECGGGCCCHHHHHHHHH
T ss_pred H---HHHHHHHHHH--h-CChHHHHHHHHHHHHHHHHHHHHHHhhCCCCeEecCC-ceEEEEEEcccCCCCHHHHHHHHH
Confidence 1 1222222222 2 23567888889999999999999998 6337665321 1222 24443 2778999997
Q ss_pred -HcCceeeee------cCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 494 -KIEMNLRVV------DSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 494 -~~GI~~~~~------~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
++||.+... .++.+|++++.. +++|+++++.|.+
T Consensus 348 ~~~gi~v~~g~~~~~~~~~~iRis~~~~--~~~l~~~l~~l~~ 388 (399)
T 1c7n_A 348 HKAQIFFDEGYIFGDGGIGFERINLAAP--SSVIQESLERLNK 388 (399)
T ss_dssp HTTCCCCEEGGGGCGGGTTEEEEECCSC--HHHHHHHHHHHHH
T ss_pred HhCCEEEeCccccCCCCCCeEEEEeccC--HHHHHHHHHHHHH
Confidence 689987542 247899999864 7899999888864
|
| >4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=2e-14 Score=179.04 Aligned_cols=340 Identities=12% Similarity=0.053 Sum_probs=198.8
Q ss_pred cccccc-ccCCCccccccccccccccccCCCCchhhhhhHHHHHHHHHHHHHHHhCCC--ccceecCcHHHHHHHHHHHH
Q 001989 592 IPLGSC-TMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFD--SFSLQPNAGAAGEYAGLMVI 668 (985)
Q Consensus 592 ~~lG~~-t~~~~~~~~~~~~~~~~f~~~~p~~p~e~~~G~~~~~~e~~~~la~l~G~~--~~~~~~~sGa~a~~a~l~ai 668 (985)
..+|+| ++.+..+...+........ ... ...+...++.+.|+++++.+ ...|+.+||++|++++++++
T Consensus 392 ~~lGh~~~p~i~~Ai~~Q~~~l~h~~---~~~------~~~~~~~~Lae~L~~~~p~~~l~~vff~~SGSeA~E~AlK~A 462 (831)
T 4a0g_A 392 QGPDPTFQAELAREMGYTAARFGHVM---FPE------NVYEPALKCAELLLDGVGKGWASRVYFSDNGSTAIEIALKMA 462 (831)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHSSCC---CTT------EECHHHHHHHHHHHHTTTTTTCCEEEEESSHHHHHHHHHHHH
T ss_pred cCCCCCCCHHHHHHHHHHHhhccccc---ccc------cCCHHHHHHHHHHHHhCCCCCCCEEEECCChhHHHHHHHHHH
Confidence 468998 8888877666643322211 000 00122447889999998743 23577899999999999988
Q ss_pred -HHHHHhcCCC--------CCCEEEE-cCCCCcccHHHHHHCCc---------------EE-------------EEEcCC
Q 001989 669 -RAYHKARGDH--------HRNVCII-PVSAHGTNPATAAMCGM---------------KI-------------VSVGTD 710 (985)
Q Consensus 669 -r~~~~~~g~~--------~~~~IIv-~~~~Hg~~~~~a~~~G~---------------~v-------------v~v~~d 710 (985)
|.|...+|.. ++.+||. ...+||....++...|. .+ ..++..
T Consensus 463 ~r~~~~~~g~~~~~~~~~~~r~~iI~~~~syHG~T~gals~tg~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~p 542 (831)
T 4a0g_A 463 FRKFCVDHNFCEATEEEKHIVVKVIALRGSYHGDTLGAMEAQAPSPYTGFLQQPWYTGRGLFLDPPTVFLSNGSWNISLP 542 (831)
T ss_dssp HHHHHHTTTC---------CCEEEEEETTCCCCSSHHHHHTSCCCGGGSTTTCTTCCCCEEEECCCEEEEETTEEEEECC
T ss_pred HHHHHhhcCCCccccccccCccEEEEecCCcccCceeeeeccCccccccccccccccCCccccCCccccccCCceEecCC
Confidence 6676555531 2456775 67899988776554331 11 112221
Q ss_pred CCC---------CCC------------------HHHHHHHHHh-----cCCCEEEEEEEcC--CCccccccC---HHHHH
Q 001989 711 AKG---------NIN------------------IEELRKAAEA-----NRDNLSTLMVTYP--STHGVYEEG---IDEIC 753 (985)
Q Consensus 711 ~~g---------~iD------------------~e~L~~~i~~-----~~~~t~~Vvv~~p--n~~G~i~~d---i~eI~ 753 (985)
... ..| .++|++.|++ ..+++++|+++.. +..|++.+| +++|.
T Consensus 543 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~~~iaavi~Epvvqg~gG~~~~~~~~L~~l~ 622 (831)
T 4a0g_A 543 ESFSEIAPEYGTFTSRDEIFDKSRDASTLARIYSAYLSKHLQEHSGVRQSAHVGALIIEPVIHGAGGMHMVDPLFQRVLV 622 (831)
T ss_dssp TTSCCCCSSTTEESCHHHHHCGGGGGSHHHHHHHHHHHHHC---------CEEEEEEECCSEETTTTSEEECHHHHHHHH
T ss_pred ccccccccccccccchhhhhcccccchhhhHHHHHHHHHHHHhhhhhcCCCcEEEEEEecccccCCCCccCCHHHHHHHH
Confidence 100 012 2577777752 2356778877652 345666422 89999
Q ss_pred HHHHHcCCEEEEEccccccccCCCCCCccC--------CcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccc
Q 001989 754 KIIHDNGGQVYMDGANMNAQVGLTSPGYIG--------ADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVV 825 (985)
Q Consensus 754 ~la~~~galliVD~a~~~~~~~l~~pg~~g--------~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g 825 (985)
++|+++|+++|+|+++ .|+++.|.++ +|+++++ |.++ +|...+|++++++++.+.+....
T Consensus 623 ~lc~~~gilLI~DEV~----tGfGRtG~~fa~e~~gv~PDiitls--K~L~----gG~~Plgav~~~~~i~~~~~~~~-- 690 (831)
T 4a0g_A 623 NECRNRKIPVIFDEVF----TGFWRLGVETTTELLGCKPDIACFA--KLLT----GGMVPLAVTLATDAVFDSFSGDS-- 690 (831)
T ss_dssp HHHHHTTCCEEEECTT----TTTTTTSBSSTHHHHSSCCSEEEEC--GGGG----TTSSCCEEEEECHHHHHTTCSSC--
T ss_pred HHHHHcCCeEEEEcCc----cccccCCCchhhHhcCCCCcEEEEe--cccc----cCccCcEEEEECHHHHHHHhccc--
Confidence 9999999999999886 3444444432 6998764 7763 33245788888888776553210
Q ss_pred cCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHH--------HHHHHhhccCCee-ecC
Q 001989 826 STGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNAN--------YMAKRLEKHYPIL-FRG 896 (985)
Q Consensus 826 ~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~--------~l~~~L~~g~~l~-~~~ 896 (985)
+...... ..++.|++++++++.+.|..+..+++.+. ..++.+ .+.+.+.+...+. ..+
T Consensus 691 ---------~~~~~~h-g~T~~g~Pla~Aaala~L~~i~~~~l~~~---~~~~~~~l~~~l~~~l~~~l~~~~~v~~vrg 757 (831)
T 4a0g_A 691 ---------KLKALLH-GHSYSAHAMGCATAAKAIQWFKDPETNHN---ITSQGKTLRELWDEELVQQISSHSAVQRVVV 757 (831)
T ss_dssp ---------GGGSCCC-CCTTTTCHHHHHHHHHHHHHHHCTTTCTT---BCTTSSBBCCCSCHHHHHHHHHSTTEEEEEE
T ss_pred ---------cccccee-ecCCcccHHHHHHHHHHHHHHHhhHHHHH---HHHHHHHHHHHHHHHHHHHHhhCCCceeEee
Confidence 0000111 12345677888888888887755443322 111112 2333343321111 111
Q ss_pred CCCceeeEEEEEecCcc--c-cCCCCHHHHHHHHHHCCCccCCCCCCCCCEEEEeccCCCCHHHHHHHHccCChhHHHHh
Q 001989 897 VNGTVAHEFIVDLRGLK--N-TAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHR 973 (985)
Q Consensus 897 ~~~~~~~~~iv~~~~~~--~-~~g~~~~~v~~~L~~~Gi~~~~~~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~ 973 (985)
. +. + +.+.+..-. . .......++.++|.++|+++... .+.||++++..+|++|||+ ++++|++++++
T Consensus 758 ~-Gl-~--~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gv~v~p~----g~~lrl~pp~~~t~e~id~--~~~~l~~~l~~ 827 (831)
T 4a0g_A 758 I-GT-L--FALELKADASNSGYASLYAKSLLIMLREDGIFTRPL----GNVIYLMCGPCTSPEICRR--LLTKLYKRLGE 827 (831)
T ss_dssp E-TT-E--EEEEEC---------CHHHHHHHHHHHHTTEECCCB----TTEEEEECCTTCCHHHHHH--HHHHHHHHHTT
T ss_pred c-cc-E--EEEEEecCccccccchHHHHHHHHHHHHCCcEEEec----CCEEEEECCCCCCHHHHHH--HHHHHHHHHHH
Confidence 1 11 1 223321000 0 00112457889999999998643 4899999999999999999 88899988876
Q ss_pred hc
Q 001989 974 LK 975 (985)
Q Consensus 974 ~~ 975 (985)
++
T Consensus 828 l~ 829 (831)
T 4a0g_A 828 FN 829 (831)
T ss_dssp TC
T ss_pred hc
Confidence 64
|
| >3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple complex, schiff-base linkage, kynuren aminotransferase; HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A* 3ath_A* 3av7_A* 1x0m_A 1wst_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=2.1e-13 Score=159.34 Aligned_cols=269 Identities=13% Similarity=0.078 Sum_probs=179.6
Q ss_pred HHHHHHHHhc----CC-CCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc-
Q 001989 215 NFQTMIADLT----GL-PMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL- 288 (985)
Q Consensus 215 e~q~~ia~L~----g~-~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~- 288 (985)
++++.+|+++ |. ++.++.+++|+|.+++.++.++ . ++||+|+++...|+.+...++ ..|.+++.++.
T Consensus 122 ~lr~~ia~~~~~~~g~~~~~~v~~t~G~~~al~~~~~~l-~--~~Gd~Vlv~~p~y~~~~~~~~----~~g~~~~~v~~~ 194 (448)
T 3aow_A 122 PLRETLMKWLGKRYGISQDNDIMITSGSQQALDLIGRVF-L--NPGDIVVVEAPTYLAALQAFN----FYEPQYIQIPLD 194 (448)
T ss_dssp HHHHHHHHHHHHHHCCCTTSEEEEESSHHHHHHHHHHHH-C--CTTCEEEEEESCCHHHHHHHH----TTCCEEEEEEEE
T ss_pred HHHHHHHHHHHHhcCcCChhhEEEeCcHHHHHHHHHHHH-c--CCCCEEEEeCCChHHHHHHHH----HcCCEEEEeccC
Confidence 4566777777 98 6678999999998888777654 2 378999999999999888865 35777777653
Q ss_pred ------hhhhc-cC----C--CEeEEE-EEcC-CCCeeecc---HHHHHHHHHhCCcEEEEEecCccccCC-----CCCC
Q 001989 289 ------KDIDY-KS----G--DVCGVL-VQYP-GTEGEVLD---YGDFIKNAHANGVKVVMATDLLALTIL-----KPPG 345 (985)
Q Consensus 289 ------~~l~~-l~----~--~t~~V~-v~~p-n~~G~v~d---i~~I~~~a~~~galliV~a~~~~lg~l-----~~~~ 345 (985)
++|++ ++ + ++++|+ +.+| |.+|.+.+ +++|.++|+++|+++++| ++.+.... .+..
T Consensus 195 ~~g~d~~~L~~~l~~~~~~~~~~k~v~~~~~~~NPtG~~~~~~~l~~i~~la~~~~~~lI~D-e~y~~~~~~g~~~~~~~ 273 (448)
T 3aow_A 195 DEGMKVEILEEKLKELKSQGKKVKVVYTVPTFQNPAGVTMNEDRRKYLLELASEYDFIVVED-DPYGELRYSGNPEKKIK 273 (448)
T ss_dssp TTEECHHHHHHHHHHHHHTTCCEEEEEECCSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEE-CSCTTCBCSSCCCCCTG
T ss_pred CCCCCHHHHHHHHhhhhccCCCCeEEEECCCCCCCcCCCCCHHHHHHHHHHHHHcCCEEEEE-CCCccccCCCCCCcCHH
Confidence 45666 65 4 789885 4666 78998865 679999999999999995 34333221 1111
Q ss_pred ---cccceEEEecC-ccccccCCCCCCc--EEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCC
Q 001989 346 ---ELGADIVVGSA-QRFGVPMGYGGPH--AAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSN 419 (985)
Q Consensus 346 ---~~GaDi~v~s~-k~lg~P~~~GGP~--~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsn 419 (985)
..|.++++++. |.|+ || +|++++++++++.+... +.. ..
T Consensus 274 ~~~~~~~vi~~~S~SK~~~-------~GlriG~v~~~~~l~~~l~~~--------------------------~~~--~~ 318 (448)
T 3aow_A 274 ALDNEGRVIYLGTFSKILA-------PGFRIGWMVGDPGIIRKMEIA--------------------------KQS--TD 318 (448)
T ss_dssp GGCTTSCEEEEEESTTTTC-------GGGCCEEEEECHHHHHHHHHH--------------------------HHH--HH
T ss_pred hcCCCCCEEEEccchhhcc-------ccccEEEEEeCHHHHHHHHHH--------------------------HHH--hc
Confidence 23567888887 7664 34 69999998877655100 000 01
Q ss_pred ccchhHHHHHHHHHHHHHhC--cchHHHHHHHHHHHHHHHHHHHhcC-C-CeEEcCCCCcceEEEecCC---HHHHHHHH
Q 001989 420 ICTAQALLANMAAMYAVYHG--PEGLKTIAQRVHGLAGTFALGLKKL-G-TVEVQGLPFFDTVKVKCAD---AHAIASAA 492 (985)
Q Consensus 420 i~t~~~l~a~~aa~~l~~~g--~~Gl~~i~~~~~~~a~~l~~~L~~~-g-~~~~~~~~~~~~~~~~~~~---~~~v~~~L 492 (985)
.|++..... ++..++.. + .+.++++.++..++.+++.+.|++. + ++++..+....-+.++++. ..++.++|
T Consensus 319 ~~~~~~~q~-a~~~~L~~-~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~g~~~~~p~~g~~~~v~~~~~~~~~~l~~~l 396 (448)
T 3aow_A 319 LCTNVFGQV-VAWRYVDG-GYLEKHIPEIRKFYKPRRDAMLEALEEFMPEGVKWTKPEGGMFIWVTLPDGIDSKKMLERA 396 (448)
T ss_dssp SSCCHHHHH-HHHHHHHT-THHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEECCCSBSSEEEEECSTTCCHHHHHHHH
T ss_pred CCCCHHHHH-HHHHHHHh-CCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEeCCCccEEEEEEcCCCCCHHHHHHHH
Confidence 122111111 11111221 2 2346777777888999999999874 2 3776532211223455542 78899999
Q ss_pred HHcCceeeee--------cCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 493 YKIEMNLRVV--------DSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 493 ~~~GI~~~~~--------~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
.++||.+... .++.+|+|++. .+++||+++++.|.+
T Consensus 397 ~~~gV~v~pg~~f~~~~~~~~~iRls~~~-~~~e~i~~~~~~L~~ 440 (448)
T 3aow_A 397 IKKGVAYVPGEAFYAHRDVKNTMRLNFTY-VDEDKIMEGIKRLAE 440 (448)
T ss_dssp HHTTEECEEGGGGSTTCCCCSEEEEECSS-SCTHHHHHHHHHHHH
T ss_pred HHCCcEEEcchhhcCCCCCCCEEEEEeCC-CCHHHHHHHHHHHHH
Confidence 9999987531 24689999986 489999999999874
|
| >1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.55 E-value=7.8e-13 Score=151.09 Aligned_cols=270 Identities=13% Similarity=0.087 Sum_probs=174.7
Q ss_pred HHHHHHHhc----C--CCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc-
Q 001989 216 FQTMIADLT----G--LPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL- 288 (985)
Q Consensus 216 ~q~~ia~L~----g--~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~- 288 (985)
+++.+|+++ | .++.++.+++|+|.++++++.++. ++||+|+++...|+++...++. .|.+++.++.
T Consensus 69 lr~~la~~l~~~~g~~~~~~~v~~t~g~~~al~~~~~~l~---~~gd~vl~~~p~y~~~~~~~~~----~g~~~~~v~~~ 141 (390)
T 1d2f_A 69 FLAAIAHWFSTQHYTAIDSQTVVYGPSVIYMVSELIRQWS---ETGEGVVIHTPAYDAFYKAIEG----NQRTVMPVALE 141 (390)
T ss_dssp HHHHHHHHHHHHSCCCCCGGGEEEESCHHHHHHHHHHHSS---CTTCEEEEEESCCHHHHHHHHH----TTCEEEEEECE
T ss_pred HHHHHHHHHHHhcCCCCCHHHEEEcCCHHHHHHHHHHHhc---CCCCEEEEcCCCcHHHHHHHHH----CCCEEEEeecc
Confidence 445555554 6 566789999999988887776652 3789999999999998888753 4777766543
Q ss_pred ----------hhhhc-cCC-CEeEEEEEcC-CCCeeecc---HHHHHHHHHhCCcEEEEEecCccccCC-----CCCCcc
Q 001989 289 ----------KDIDY-KSG-DVCGVLVQYP-GTEGEVLD---YGDFIKNAHANGVKVVMATDLLALTIL-----KPPGEL 347 (985)
Q Consensus 289 ----------~~l~~-l~~-~t~~V~v~~p-n~~G~v~d---i~~I~~~a~~~galliV~a~~~~lg~l-----~~~~~~ 347 (985)
++|++ +.+ ++++|++++| |.+|.+.| +++|+++|+++|+++++| +..+.... .+...+
T Consensus 142 ~~~~~~~~d~~~l~~~l~~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~D-e~~~~~~~~g~~~~~~~~~ 220 (390)
T 1d2f_A 142 KQADGWFCDMGKLEAVLAKPECKIMLLCSPQNPTGKVWTCDELEIMADLCERHGVRVISD-EIHMDMVWGEQPHIPWSNV 220 (390)
T ss_dssp ECSSSEECCHHHHHHHHTSTTEEEEEEESSCTTTCCCCCTTHHHHHHHHHHHTTCEEEEE-CTTTTCBCSSSCCCCGGGT
T ss_pred cCCCccccCHHHHHHHhccCCCeEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCCEEEEE-ccccccccCCCCCcCHHHc
Confidence 34555 654 7999998888 67999876 899999999999999995 33332211 111123
Q ss_pred c--c-eEEEecC-ccccccCCCCCCcEEEEEEc-hhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccc
Q 001989 348 G--A-DIVVGSA-QRFGVPMGYGGPHAAFLATS-QEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICT 422 (985)
Q Consensus 348 G--a-Di~v~s~-k~lg~P~~~GGP~~G~l~~~-~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t 422 (985)
+ . |+ ++|. |.|+.| |..+|+++++ +++.+.+..... | ...-++.|.
T Consensus 221 ~~~~~d~-~~s~sK~~~~~----G~r~G~~~~~~~~~~~~~~~~~~-------~---------------~~~~~~~~~-- 271 (390)
T 1d2f_A 221 ARGDWAL-LTSGSKSFNIP----ALTGAYGIIENSSSRDAYLSALK-------G---------------RDGLSSPSV-- 271 (390)
T ss_dssp CCSSEEE-EECSHHHHTCG----GGCCEEEEECSHHHHHHHHHHHH-------T---------------TSCCCSCCH--
T ss_pred chhhHhh-ccCccHhhccc----ChhheEEEECCHHHHHHHHHHHh-------h---------------hcccCCCCH--
Confidence 2 2 77 7787 877532 2336899885 566554410000 0 000011111
Q ss_pred hhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhc-CCCeEEcCCCCcceE-EEecC----CHHHHHHHHH-Hc
Q 001989 423 AQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKK-LGTVEVQGLPFFDTV-KVKCA----DAHAIASAAY-KI 495 (985)
Q Consensus 423 ~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~-~g~~~~~~~~~~~~~-~~~~~----~~~~v~~~L~-~~ 495 (985)
....+..+++ . .+.+.++++.++..++.+++.+.|++ ++++++..+ ..+-+ .+.++ +..++.+.|. ++
T Consensus 272 -~~~~a~~~~l--~-~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 346 (390)
T 1d2f_A 272 -LALTAHIAAY--Q-QGAPWLDALRIYLKDNLTYIADKMNAAFPELNWQIP-QSTYLAWLDLRPLNIDDNALQKALIEQE 346 (390)
T ss_dssp -HHHHHHHHHH--H-HCHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCCCCC-SBCSEEEEECGGGCCCHHHHHHHHHHTT
T ss_pred -HHHHHHHHHH--h-cCHHHHHHHHHHHHHHHHHHHHHHHhhCCCCEEecC-CccEEEEEEccccCCCHHHHHHHHHHHc
Confidence 1222222222 2 23456788888899999999999988 633765532 11122 24443 2778999998 57
Q ss_pred Cceeeee------cCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 496 EMNLRVV------DSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 496 GI~~~~~------~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
||.+... .++.+|++++. ++++|+++++.|..
T Consensus 347 gi~v~~g~~f~~~~~~~~Ris~~~--~~~~l~~~l~~l~~ 384 (390)
T 1d2f_A 347 KVAIMPGYTYGEEGRGFVRLNAGC--PRSKLEKGVAGLIN 384 (390)
T ss_dssp CEECEEGGGGCGGGTTEEEEECCS--CHHHHHHHHHHHHH
T ss_pred CEEeeCccccCCCCCCeEEEEecC--CHHHHHHHHHHHHH
Confidence 9987542 24789999986 57899988888763
|
| >2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.55 E-value=4.4e-13 Score=155.25 Aligned_cols=287 Identities=13% Similarity=0.099 Sum_probs=170.9
Q ss_pred HHHHHHHHHHHHhC-CCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEE-cCCCCcccHHHHH------------
Q 001989 633 MFNNLGEWLCTITG-FDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCII-PVSAHGTNPATAA------------ 698 (985)
Q Consensus 633 ~~~e~~~~la~l~G-~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv-~~~~Hg~~~~~a~------------ 698 (985)
...+++++++++++ .+ ..++.++|++|+++++.++|.+. ++++||+ ...+|+.......
T Consensus 93 ~~~~l~~~l~~~~~~~~-~v~~~~~g~ea~~~al~~ar~~~------~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~p 165 (424)
T 2e7u_A 93 LEVALAKKVKRAYPFVD-LVRFVNSGTEATMSALRLARGYT------GRPYIVKFRGNYHGHADGLLVEAGSGALTLGVP 165 (424)
T ss_dssp HHHHHHHHHHHHCTTCC-EEEEESSHHHHHHHHHHHHHHHH------CCCEEEEETTCCCCCCGGGSEECCSSSCCBCEE
T ss_pred HHHHHHHHHHHhCCCCC-EEEEeCCHHHHHHHHHHHHHHhh------CCCEEEEECCCcCCCcHHHHHhcCCcccccCCC
Confidence 45678889999984 32 34667889999888877766552 3456666 4567775443221
Q ss_pred -HCCc------EEEEEcCCCCCCCCHHHHHHHHHhcCCCEEEEEEEcCC-CccccccC----HHHHHHHHHHcCCEEEEE
Q 001989 699 -MCGM------KIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPS-THGVYEEG----IDEICKIIHDNGGQVYMD 766 (985)
Q Consensus 699 -~~G~------~vv~v~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~pn-~~G~i~~d----i~eI~~la~~~galliVD 766 (985)
..|+ +++.+|. .|+++|+++++++.+++++|+++..+ .+|.+. + +++|.++ +++|+++++|
T Consensus 166 ~~~g~~~~~~~~~~~~~~-----~d~~~le~~l~~~~~~~~~vi~ep~~~~~G~~~-~~~~~l~~l~~l-~~~g~~lI~D 238 (424)
T 2e7u_A 166 SSAGVPEEYAKLTLVLEY-----NDPEGLREVLKRRGEEIAAIIFEPVVGNAGVLV-PTEDFLKALHEA-KAYGVLLIAD 238 (424)
T ss_dssp SSTTCCHHHHTTEEEECT-----TCHHHHHHHHHHHGGGEEEEEECSSBCTTSCBC-CCHHHHHHHHHG-GGGTCEEEEE
T ss_pred CCCCCCCccCCceEeCCC-----CCHHHHHHHHHhCCCCEEEEEEeCCCCCCCCcC-CCHHHHHHHHHH-HHcCCEEEEe
Confidence 1232 3555664 38999999997432467766664323 378776 5 9999999 9999999999
Q ss_pred ccccccccCCCCCC---c--cCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCC
Q 001989 767 GANMNAQVGLTSPG---Y--IGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGT 841 (985)
Q Consensus 767 ~a~~~~~~~l~~pg---~--~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~ 841 (985)
++|. ++ .....+ . ..+|++++ +|+|+ +|..+|++++++++.+.+... +. . .
T Consensus 239 Ev~~-g~-~~g~~~~~~~~~~~~di~s~--sK~l~-----~G~~~G~~~~~~~~~~~~~~~--~~-----------~--~ 294 (424)
T 2e7u_A 239 EVMT-GF-RLAFGGATELLGLKPDLVTL--GKILG-----GGLPAAAYAGRREIMEKVAPL--GP-----------V--Y 294 (424)
T ss_dssp CTTT-TT-TSSTTHHHHHHTCCCSEEEE--CGGGG-----TTSSCEEEEECHHHHTTBTTT--SS-----------B--C
T ss_pred cCcc-cc-ccchhHHHHHhCCCcchhhh--hhhhh-----CCcceEEEEEcHHHHhhhccc--CC-----------c--c
Confidence 9985 22 111111 1 23688754 59885 345688999998776655321 00 0 0
Q ss_pred CCCcchhhhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhcc---CCe--eecCCCCceeeEEEEEecCccc--
Q 001989 842 IAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKH---YPI--LFRGVNGTVAHEFIVDLRGLKN-- 914 (985)
Q Consensus 842 i~s~~~g~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~g---~~l--~~~~~~~~~~~~~iv~~~~~~~-- 914 (985)
..+++.+++..++++.+.+..+.. ..+..++..+++++++++|++. +++ ...+ .+.+ +.+.+.....
T Consensus 295 ~~~t~~~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~-~g~~---~~i~~~~~~~~~ 368 (424)
T 2e7u_A 295 QAGTLSGNPLAMAAGLATLELLEE--NPGYYAYLEDLGARLEAGLKEVLKEKGLPHTVNR-VGSM---ITVFFTEGPVVT 368 (424)
T ss_dssp CCCTTCSCHHHHHHHHHHHHHHHH--CTHHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEE-ETTE---EEEESSSSCCCS
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHHHHHHhCCCceEEEe-eceE---EEEEEeCCCCcc
Confidence 001112234445555566665543 1234556777888888888652 222 1221 1222 3445431000
Q ss_pred ------cCCCCHHHHHHHHHHCCCccCCCCCCCCCEEEEeccCCCCHHHHHHHHccCChhHH
Q 001989 915 ------TAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKSWTGIVMLSSPSEKK 970 (985)
Q Consensus 915 ------~~g~~~~~v~~~L~~~Gi~~~~~~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~ 970 (985)
..+....++.+.|.++||.+..... ..++ ++..+|++||++ +++.|+++
T Consensus 369 ~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~---~~~~--~~~~~t~~~i~~--~l~~l~~~ 423 (424)
T 2e7u_A 369 FQDARRTDTELFKRFFHGLLDRGIYWPPSNF---EAAF--LSVAHREEDVEK--TLEALRKA 423 (424)
T ss_dssp HHHHTTSCHHHHHHHHHHHHTTTEECCSSSS---SCEE--CCTTCCHHHHHH--HHHHHHHH
T ss_pred hhhhcccCHHHHHHHHHHHHHCCeEEeccCC---CceE--eeccCCHHHHHH--HHHHHHHh
Confidence 0001245788999999998865432 2344 557899999999 66776654
|
| >3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300} | Back alignment and structure |
|---|
Probab=99.54 E-value=6.1e-13 Score=153.80 Aligned_cols=329 Identities=12% Similarity=0.106 Sum_probs=197.5
Q ss_pred CHHHHHHHHHHHhcCCCccceecCCCCCC---CCCcHHHHHHHH-----hCCcccccc-CCChhhHhhhHHHHHHHHHHH
Q 001989 149 TESQMIEHMQKLASMNKVYKSFIGMGYYN---THVPPVILRNIM-----ENPAWYTQY-TPYQAEIAQGRLESLLNFQTM 219 (985)
Q Consensus 149 se~e~~~~~~~l~~~n~~~~~~lG~g~y~---~~~p~~v~~~i~-----~~~~~~t~~-~pyq~e~sqg~l~~i~e~q~~ 219 (985)
.+..+.+.+.+++++...+ -++.|..+ ...|+.+.+++. ..+.....| ++. +| +.++++.
T Consensus 10 ~~~~~~~~~~~~~~~~~~i--~l~~g~p~~~~~~~~~~v~~a~~~~~~~~~~~~~~~Yp~~~-----~g----~~~lr~~ 78 (423)
T 3ez1_A 10 ALDLARQAYEAFKARGLNL--NMQRGQPADADFDLSNGLLTVLGAEDVRMDGLDLRNYPGGV-----AG----LPSARAL 78 (423)
T ss_dssp HHHHHHHHHHHHHHHTCCE--ESCCCCCCHHHHHTTGGGGGSCCGGGCEETTEETTSSCSCT-----TC----CHHHHHH
T ss_pred HHHHHHHHHHHhhcCCceE--ecCCCCCChHhCCCcHHHHHHHhhhHHhhcchhhhCCCCCC-----CC----hHHHHHH
Confidence 4556778888887665432 23556433 224444433321 112122334 321 11 2357789
Q ss_pred HHHhcCCCCcceeeccchHHHHH--HHHHHhhhhcCC---------CCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc
Q 001989 220 IADLTGLPMSNASLLDEGTAAAE--AMAMCNNIQKGK---------KKTFIIASNCHPQTIDICITRADGFDIKVVVSDL 288 (985)
Q Consensus 220 ia~L~g~~~~~~sl~~~~ta~~e--a~~~a~~~~~~~---------g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~ 288 (985)
+|++++.++.++.+++|++.++. .++.++.. ..+ ||+|+++...|+.+...++. .|.+++.++.
T Consensus 79 ia~~~~~~~~~i~~t~G~~~al~~~~~~~~l~~-~~~g~~~~~~~~gd~Vlv~~p~y~~~~~~~~~----~g~~~~~v~~ 153 (423)
T 3ez1_A 79 FAGYLDVKAENVLVWNNSSLELQGLVLTFALLH-GVRGSTGPWLSQTPKMIVTVPGYDRHFLLLQT----LGFELLTVDM 153 (423)
T ss_dssp HHHHTTSCGGGEEECSSCHHHHHHHHHHHHHHT-CCTTCSSCGGGGCCEEEEEESCCHHHHHHHHH----HTCEEEEEEE
T ss_pred HHHHhCCChhhEEEeCCcHHHHHHHHHHHHHhc-cCCCccccccCCCCEEEEcCCCcHHHHHHHHH----cCCEEEeccC
Confidence 99999999889999999998775 44444321 003 69999999999999888764 3777776643
Q ss_pred -------hhhhc-c--CCCEeEEEEE-cC-CCCeeeccHH---HHHHHH-HhCCcEEEEEecCccc-cCC----CCC---
Q 001989 289 -------KDIDY-K--SGDVCGVLVQ-YP-GTEGEVLDYG---DFIKNA-HANGVKVVMATDLLAL-TIL----KPP--- 344 (985)
Q Consensus 289 -------~~l~~-l--~~~t~~V~v~-~p-n~~G~v~di~---~I~~~a-~~~galliV~a~~~~l-g~l----~~~--- 344 (985)
++|++ + ++++++|+++ +| |.+|.+.+.+ +|+++| +++|+++++|. ..+. ... ..+
T Consensus 154 ~~~g~d~~~l~~~l~~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~a~~~~~~~li~De-~y~~~~~~~~~~~~~~~~ 232 (423)
T 3ez1_A 154 QSDGPDVDAVERLAGTDPSVKGILFVPTYSNPGGETISLEKARRLAGLQAAAPDFTIFADD-AYRVHHLVEEDRAEPVNF 232 (423)
T ss_dssp ETTEECHHHHHHHHHSCTTEEEEEECSSSCTTTCCCCCHHHHHHHHTCCCSSTTCEEEEEC-TTSSCBCCSSSCCCCCCH
T ss_pred CCCCCCHHHHHHHHhhCCCceEEEECCCCCCCCCcCCCHHHHHHHHHHHHhccCCEEEEEC-CcchhhcCCCCCCCCcch
Confidence 56666 6 6789999865 55 7899998766 888888 99999999953 3331 111 111
Q ss_pred -------CcccceEEEecC-ccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeeccccccccccccc
Q 001989 345 -------GELGADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKA 416 (985)
Q Consensus 345 -------~~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~a 416 (985)
+..+.+|+++|. |. +. +|..+|++++++++++.+... +.. .
T Consensus 233 ~~~~~~~~~~~~~i~~~S~sK~-~~----~G~r~G~~~~~~~~~~~~~~~-------------------------~~~-~ 281 (423)
T 3ez1_A 233 VVLARDAGYPDRAFVFASTSKI-TF----AGAGLGFVASSEDNIRWLSKY-------------------------LGA-Q 281 (423)
T ss_dssp HHHHHHHTCTTSEEEEEESTTT-SC----SSSSCEEEEECHHHHHHHHHH-------------------------HHH-S
T ss_pred hhhhhccCCCCeEEEEeCchhh-cc----CCcceEEEEeCHHHHHHHHHH-------------------------Hhh-h
Confidence 234677889997 65 33 345689999998877655100 000 0
Q ss_pred CCCccchhHHHHHHHHHHHHH-hC--cchHHHHHHH----HHHHHHHHHHHHhcCC-CeEEcCCCCcceEEEecCC--HH
Q 001989 417 TSNICTAQALLANMAAMYAVY-HG--PEGLKTIAQR----VHGLAGTFALGLKKLG-TVEVQGLPFFDTVKVKCAD--AH 486 (985)
Q Consensus 417 tsni~t~~~l~a~~aa~~l~~-~g--~~Gl~~i~~~----~~~~a~~l~~~L~~~g-~~~~~~~~~~~~~~~~~~~--~~ 486 (985)
..+++......+++ ++.. .+ .+-+++..+. ...+.++|.+.|.++| ++++..+....-+.+.+++ ..
T Consensus 282 --~~~~~~~~~~a~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~p~~g~~~~~~~~~~~~~ 358 (423)
T 3ez1_A 282 --SIGPNKVEQARHVK-FLTEYPGGLEGLMRDHAAIIAPKFRAVDEVLRAELGEGGEYATWTLPKGGYFISLDTAEPVAD 358 (423)
T ss_dssp --CSCCCHHHHHHHHH-HHHHSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSSEEECCCSBSSCEEEEESSSCHH
T ss_pred --ccCCCHHHHHHHHH-HHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCCceEEeCCCccEEEEEECCCCcHH
Confidence 11111111111111 1222 11 1122333333 3334445555565565 4766532211123344443 78
Q ss_pred HHHHHHHHcCceeeee----------cCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 487 AIASAAYKIEMNLRVV----------DSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 487 ~v~~~L~~~GI~~~~~----------~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
++.+.|.++||.+... .++.+|+++... ++++|+++++.|.+
T Consensus 359 ~~~~~l~~~gv~v~~~g~~~~~~~~~~~~~iRis~~~~-~~~~i~~~~~~l~~ 410 (423)
T 3ez1_A 359 RVVKLAEAAGVSLTPAGATYPAGQDPHNRNLRLAPTRP-PVEEVRTAMQVVAA 410 (423)
T ss_dssp HHHHHHHHTTEECCCTTTTSSTTCCSSSCEEEECCSSS-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCcEEecCcccccCCCCCCCCeEEEEcCCC-CHHHHHHHHHHHHH
Confidence 8999999999987541 247899999766 99999999999874
|
| >3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987} | Back alignment and structure |
|---|
Probab=99.54 E-value=9.9e-14 Score=158.39 Aligned_cols=278 Identities=14% Similarity=0.108 Sum_probs=179.4
Q ss_pred HHHHHHHH-HHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCch--
Q 001989 213 LLNFQTMI-ADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDLK-- 289 (985)
Q Consensus 213 i~e~q~~i-a~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~~-- 289 (985)
..++++.+ |+++| ...++.++.+||.++..++.++.. ++||+||++...|+++...++. .|++++.+|++
T Consensus 38 ~~~l~~~~~a~~~g-~~~~~v~~~sgt~al~~al~~l~~--~~Gd~Vi~~~~~~~~~~~~~~~----~G~~~~~v~~~~~ 110 (377)
T 3ju7_A 38 NQRFEQTIMSGFFQ-NRGAVTTVANATLGLMAAIQLKKR--KKGKYALMPSFTFPATPLAAIW----CGLEPYFIDISID 110 (377)
T ss_dssp HHHHHHHHHHHTST-TCSEEEEESCHHHHHHHHHHHHSC--TTCCEEEEESSSCTHHHHHHHH----TTCEEEEECBCTT
T ss_pred HHHHHHHHHHHHhC-CCCeEEEeCCHHHHHHHHHHHcCC--CCcCEEEECCCCcHHHHHHHHH----cCCEEEEEecCCc
Confidence 45678899 99999 233577889999887777666433 3899999999999999888753 58888887653
Q ss_pred -------hhhc-c-CCC--EeEEEEEcCCCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCCCCCcc---cceEEEec
Q 001989 290 -------DIDY-K-SGD--VCGVLVQYPGTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKPPGEL---GADIVVGS 355 (985)
Q Consensus 290 -------~l~~-l-~~~--t~~V~v~~pn~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~~~~~~---GaDi~v~s 355 (985)
++++ + +++ |++|++.+ ++|.+.|+++|.++|+ +|+++++|+ .+++|.......+ .+|+.+.|
T Consensus 111 ~~~~d~~~l~~~i~~~~~~tk~v~~~~--~~G~~~~~~~i~~la~-~~~~vi~D~-a~a~g~~~~~~~~g~~~~d~~~~S 186 (377)
T 3ju7_A 111 DWYMDKTVLWDKIEELKEEVAIVVPYA--TFGSWMNLEEYEELEK-KGVPVVVDA-APGFGLMNGGMHYGQDFSGMIIYS 186 (377)
T ss_dssp TCSBCHHHHHHHHHHHGGGEEEECCBC--GGGBCCCCHHHHHHHH-TTCCBEEEC-TTCTTCEETTEETTTTCSSEEEEE
T ss_pred cCCcCHHHHHHHHhcCCCCceEEEEEC--CCCCccCHHHHHHHHh-cCCEEEEEC-CCccCCeECCEeccCCCCcEEEEE
Confidence 4555 5 556 99888544 5899999999999999 999999953 4566643222233 26887776
Q ss_pred --C-ccccccCCCCCCcEEEEEEc-hhhHhcCCC-ceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHH
Q 001989 356 --A-QRFGVPMGYGGPHAAFLATS-QEYKRMMPG-RIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANM 430 (985)
Q Consensus 356 --~-k~lg~P~~~GGP~~G~l~~~-~~~~~~lp~-~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~ 430 (985)
. |.|++ +..|++.++ +++.+++.. +-.|+. .. |. + .+.|. |... ..+ .
T Consensus 187 ~~~~K~l~~------g~gG~~~~~~~~l~~~~~~~~~~g~~----~~--~~--------~--~~~g~-~~~~-~~~---~ 239 (377)
T 3ju7_A 187 FHATKPFGI------GEGGLIYSKNEEDIQRIKRMGNFGFD----TN--RE--------C--TMMGF-NCKM-SEY---A 239 (377)
T ss_dssp CBTTSSSCC------BSCEEEEESCHHHHHHHHHHTBTTBC----TT--SC--------B--CSSCC-BCCC-CHH---H
T ss_pred CCCCCcCCC------CCcEEEEECCHHHHHHHHHHHhcCCC----CC--Cc--------e--eeccc-cCCC-CHH---H
Confidence 3 66642 134666665 444443311 111110 00 00 0 01111 1111 122 2
Q ss_pred HHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEE--cC-C--CCcc-eEEEecCC---HHHHHHHHHHcCceeee
Q 001989 431 AAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEV--QG-L--PFFD-TVKVKCAD---AHAIASAAYKIEMNLRV 501 (985)
Q Consensus 431 aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~--~~-~--~~~~-~~~~~~~~---~~~v~~~L~~~GI~~~~ 501 (985)
|++-+. ..+.++++.++..++++++.+.|++++++.+ .. . .... -+.+..++ .+++.+.|.++||.++.
T Consensus 240 aa~~~~--~l~~l~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~gI~~~~ 317 (377)
T 3ju7_A 240 AAIGIA--TMKKWDDKLKERTRISEWYKQLLQSNGLMKKGWQLQKTEAVIQQFMPILCPEEVRNKQVIEDLKKQKIEARL 317 (377)
T ss_dssp HHHHHH--HHHTHHHHHHHHHHHHHHHHHHHHHTTTTTTTCBCCCCSCBCCSSEEEECCTTSCHHHHHHHHHTTTBCCBC
T ss_pred HHHHHH--HHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccCCCCCcceEEEEEEEeCChhhHHHHHHHHHHCCCceec
Confidence 222111 1256788888889999999999998853322 11 1 1111 23555554 78999999999996532
Q ss_pred ec-------------------------CCeEEEEeccCCCHHHHHHHHHHHhCC
Q 001989 502 VD-------------------------SNTVTASFDETTTLEDVDKLFIVFAGG 530 (985)
Q Consensus 502 ~~-------------------------~~~lris~t~~~t~edId~li~aL~~~ 530 (985)
.+ ...|++.++...|++|+++++++|..-
T Consensus 318 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~l~lp~~~~~t~~di~~v~~~l~~~ 371 (377)
T 3ju7_A 318 YFSPSCHQQVLFRNYKSTDLTRTNKIAKRIVSLPLWEGMTKEIVEQIVICLGQK 371 (377)
T ss_dssp TTSSCGGGSGGGTTSCBSCCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHTC-
T ss_pred ccCCccccchhhhcCCCCCCHHHHHHHhCEEECCCCCCCCHHHHHHHHHHHHHH
Confidence 10 246999999999999999999999854
|
| >2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.54 E-value=4.1e-13 Score=155.68 Aligned_cols=276 Identities=11% Similarity=0.061 Sum_probs=181.4
Q ss_pred HHHHHHHHhc-----CCCCcc---eeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcC-CCeEEEE
Q 001989 215 NFQTMIADLT-----GLPMSN---ASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADG-FDIKVVV 285 (985)
Q Consensus 215 e~q~~ia~L~-----g~~~~~---~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~-~gi~v~~ 285 (985)
++++.+|+++ +.++.+ +.+++|+|.+++.++.++. ++||+|+++...|+.+...++ . .|.+++.
T Consensus 92 ~lr~~ia~~~~~~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~---~~gd~Vl~~~p~y~~~~~~~~----~~~g~~~~~ 164 (430)
T 2x5f_A 92 ELRDLWQQKMLRDNPELSIDNMSRPIVTNALTHGLSLVGDLFV---NQDDTILLPEHNWGNYKLVFN----TRNGANLQT 164 (430)
T ss_dssp HHHHHHHHHHHHHCTTCCGGGBCCCEEESHHHHHHHHHHHHHC---CTTCEEEEESSCCTHHHHHHT----TTTCCEEEE
T ss_pred HHHHHHHHHHhccCcccCCCccceEEEcCCchHHHHHHHHHHh---CCCCEEEEcCCcCccHHHHHH----HhcCCeEEE
Confidence 4667778877 888778 8899999988887776552 378999999999998877753 4 6888877
Q ss_pred eCc---------hhhhc-cCC---CEeEEEEEcC-CCCeeecc---HHHHHHHHHh-----CCcEEEEEecCccccCC-C
Q 001989 286 SDL---------KDIDY-KSG---DVCGVLVQYP-GTEGEVLD---YGDFIKNAHA-----NGVKVVMATDLLALTIL-K 342 (985)
Q Consensus 286 v~~---------~~l~~-l~~---~t~~V~v~~p-n~~G~v~d---i~~I~~~a~~-----~galliV~a~~~~lg~l-~ 342 (985)
++. ++|++ +++ ++++|++.+| |.+|.+.| +++|+++|++ +|+++++|. ..+.... .
T Consensus 165 ~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~~~~~~li~De-~~~~~~~~~ 243 (430)
T 2x5f_A 165 YPIFDKDGHYTTDSLVEALQSYNKDKVIMILNYPNNPTGYTPTHKEVTTIVEAIKALANKGTKVIAVVDD-AYYGLFYED 243 (430)
T ss_dssp ECCBCTTSCBCSHHHHHHHHHCCSSEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHHHTTCEEEEEEEC-TTTTCBCSS
T ss_pred EeccCccCCcCHHHHHHHHHhcCCCCEEEEEcCCCCCCCCcCCHHHHHHHHHHHHhhhhccCCEEEEEeh-hcccccCCc
Confidence 754 33444 444 7999999988 67999887 8999999999 999999953 3332111 1
Q ss_pred ---CC-C-c----ccc---eEEEecC-ccccccCCCCCCcEEEEEE---chhhHhcCCCceeeeeecCCCCcceeeeccc
Q 001989 343 ---PP-G-E----LGA---DIVVGSA-QRFGVPMGYGGPHAAFLAT---SQEYKRMMPGRIVGVSIDSSGKPALRVAMQT 406 (985)
Q Consensus 343 ---~~-~-~----~Ga---Di~v~s~-k~lg~P~~~GGP~~G~l~~---~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~t 406 (985)
.+ . . .+. +++++|. |.|+.| |-.+|++++ ++++.+.+...
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~----G~riG~~~~~~~~~~~~~~l~~~-------------------- 299 (430)
T 2x5f_A 244 VYTQSLFTALTNLHSNAILPIRLDGATKEFFAW----GFRVGFMTFGTSDQTTKEVLEAK-------------------- 299 (430)
T ss_dssp SCCSCHHHHHHTTCCTTEEEEEEEEHHHHTTCG----GGCCEEEEEBCCCHHHHHHHHHH--------------------
T ss_pred ccchHHHHHHhhccCCcceEEEEEecccCCCCC----CCCeEEEEEecCCHHHHHHHHHH--------------------
Confidence 11 1 1 344 6778887 777532 223689999 88877655110
Q ss_pred ccccccccccCCCccchhHHHHHHHHHHHH-Hh-CcchHHHHHHHHHHHHHHHHHHHh----cCCCeEEcCCCCcceEEE
Q 001989 407 REQHIRRDKATSNICTAQALLANMAAMYAV-YH-GPEGLKTIAQRVHGLAGTFALGLK----KLGTVEVQGLPFFDTVKV 480 (985)
Q Consensus 407 re~~irre~atsni~t~~~l~a~~aa~~l~-~~-g~~Gl~~i~~~~~~~a~~l~~~L~----~~g~~~~~~~~~~~~~~~ 480 (985)
. ....|. .+.+. +.....++.++ +. .. -.+.++++.++..++.+++.+.|+ +.| +++..+....-+.+
T Consensus 300 ~-~~~~~~-~~~~~-~~~~~~a~~~~--l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g-~~~~~~~~g~~~~~ 373 (430)
T 2x5f_A 300 V-KGLIRS-NISSG-PLPTQSAVKHV--LKNNKQFDKEIEQNIQTLKERYEVTKEVVYADQYHSH-WQAYDFNSGYFMAI 373 (430)
T ss_dssp H-HHHHHT-TTSSC-CHHHHHHHHHH--HHSCHHHHHHHHHHHHHHHHHHHHHHHHHTCGGGTTT-EEECCCCBSSEEEE
T ss_pred H-hhhhhc-ccCCC-ChHHHHHHHHH--HccChHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCC-ceeeCCCceEEEEe
Confidence 0 000110 11111 11112222222 22 10 012344588888899999999998 666 88764321111333
Q ss_pred ecCC--HHHHHHHHHH-cCceeeeecCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 481 KCAD--AHAIASAAYK-IEMNLRVVDSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 481 ~~~~--~~~v~~~L~~-~GI~~~~~~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
..++ ..++.++|.+ +||.+....++.+|++++. ++++||++++++|.+
T Consensus 374 ~~~~~~~~~~~~~l~~~~gi~v~~g~~~~iRis~~~-~~~e~i~~~~~~l~~ 424 (430)
T 2x5f_A 374 KVHDVDPEALRKHLIDKYSIGVIALNATDIRIAFSC-VEKDDIPHVFDSIAK 424 (430)
T ss_dssp EESSSCHHHHHHHHHHHHCEECEECSSSEEEEEGGG-SCGGGHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHhCCEEEecCCCCeEEEEEec-CCHHHHHHHHHHHHH
Confidence 4443 7889999998 8998876445789999996 599999999999874
|
| >3asa_A LL-diaminopimelate aminotransferase; PLP dependent aminotransferase; 2.05A {Chlamydia trachomatis} PDB: 3asb_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=1.7e-12 Score=149.01 Aligned_cols=330 Identities=14% Similarity=0.083 Sum_probs=196.0
Q ss_pred HHHHHHHHHHhcC--CCccceecCCCCCCCCCcHHHHHHHHhC------CccccccCCChhhHhhhHHHHHHHHHHHHHH
Q 001989 151 SQMIEHMQKLASM--NKVYKSFIGMGYYNTHVPPVILRNIMEN------PAWYTQYTPYQAEIAQGRLESLLNFQTMIAD 222 (985)
Q Consensus 151 ~e~~~~~~~l~~~--n~~~~~~lG~g~y~~~~p~~v~~~i~~~------~~~~t~~~pyq~e~sqg~l~~i~e~q~~ia~ 222 (985)
.++.+.+..+..+ +..+.+ ++.|.++...|+.+.+++.+. +.....|+|. +| ..++++.+|+
T Consensus 17 ~~~~~~~~~~~~~~~~~~~i~-l~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~y~~~-----~g----~~~lr~~la~ 86 (400)
T 3asa_A 17 ADLQKRVAQFRLENPQHTVIN-LSIGDTTQPLNASVAEAFASSIARLSSPTTCRGYGPD-----FG----LPALRQKLSE 86 (400)
T ss_dssp HHHHHHHHHHHHHCTTSCCEE-CSSCCCCCCCCHHHHHHHHHHHHHHTSSSCCCCCCCT-----TC----CHHHHHHHHH
T ss_pred HHHHHHHHHhhhhcCCCceEe-ccCCCCCCCCCHHHHHHHHHHHhcccccccccCCCCC-----CC----CHHHHHHHHH
Confidence 4566666665533 222322 455655555666665444321 1112234331 12 2357788999
Q ss_pred h--cC-CCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeE-EEEeCchh---hhc-c
Q 001989 223 L--TG-LPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIK-VVVSDLKD---IDY-K 294 (985)
Q Consensus 223 L--~g-~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~-v~~v~~~~---l~~-l 294 (985)
+ .| .++.++.+++|++.+++.+... +. +||+|+++...|+.+...++. .|.+ ++.++.++ +.. +
T Consensus 87 ~l~~g~~~~~~v~~~~G~~~al~~~~~~--~~--~gd~Vl~~~p~y~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~l 158 (400)
T 3asa_A 87 DFYRGFVDAKEIFISDGAKVDLFRLLSF--FG--PNQTVAIQDPSYPAYLDIARL----TGAKEIIALPCLQENAFFPEF 158 (400)
T ss_dssp TTSTTSSCGGGEEEESCHHHHHHHHHHH--HC--SSCEEEEEESCCHHHHHHHHH----TTCSEEEEEECCGGGTTCCCC
T ss_pred HHHcCCCCHHHEEEccChHHHHHHHHHH--cC--CCCEEEECCCCcHHHHHHHHH----cCCcceEecccchhcCcccCh
Confidence 8 57 6777899999999887764322 23 789999999999998877653 4666 66666531 221 2
Q ss_pred C--CCEeEEEEEcC-CCCeeecc---HHHHHHHHHhCCcEEEEEecCcc-ccCC----CCCCcc----cceEEEecC-cc
Q 001989 295 S--GDVCGVLVQYP-GTEGEVLD---YGDFIKNAHANGVKVVMATDLLA-LTIL----KPPGEL----GADIVVGSA-QR 358 (985)
Q Consensus 295 ~--~~t~~V~v~~p-n~~G~v~d---i~~I~~~a~~~galliV~a~~~~-lg~l----~~~~~~----GaDi~v~s~-k~ 358 (985)
. +++++|++++| |.+|.+.+ +++|+++|+++|+++++|. ..+ ++.- .+...+ +.+++++|. |.
T Consensus 159 ~~~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~ 237 (400)
T 3asa_A 159 PEDTHIDILCLCSPNNPTGTVLNKDQLRAIVHYAIEHEILILFDA-AYSTFISDPSLPKSIFEIPDARFCAIEINSFSKP 237 (400)
T ss_dssp CTTCCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEC-TTGGGCCCTTSCSSGGGSTTGGGTEEEEEECCGG
T ss_pred hhccCccEEEEeCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEEc-hhhhhhcCCCCCCchhhCCCCCCceEEEecchhh
Confidence 2 57899999888 78999876 6788999999999999953 333 3211 111222 245888887 87
Q ss_pred ccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHHHHh
Q 001989 359 FGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYH 438 (985)
Q Consensus 359 lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~ 438 (985)
|+. +|..+|++++++++.+.+. + .+. +-.. ++...+.+-.+..+..+..++ +..
T Consensus 238 ~g~----~GlriG~~~~~~~~~~~~~---------------~--~~~-~~~~-~~~~~~~~~~~~~~~~a~~~~--l~~- 291 (400)
T 3asa_A 238 LGF----AGIRLGWTVIPQELTYADG---------------H--FVI-QDWE-RFLSTTFNGASIPAQEAGVAG--LSI- 291 (400)
T ss_dssp GTT----TTCCCEEEECCTTCBCTTS---------------C--BHH-HHHH-HHHHHHCCCCCHHHHHHHHHH--HHH-
T ss_pred cCC----cchheeEEeeChhhccchh---------------h--hHH-HHHH-HHhccCccCCChHHHHHHHHH--hCc-
Confidence 753 2334689988776532210 0 000 0000 001111100111112222222 222
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCCCcceEEEe-cCC---HHHHHHHHHH-cCceeeee------cCCeE
Q 001989 439 GPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDTVKVK-CAD---AHAIASAAYK-IEMNLRVV------DSNTV 507 (985)
Q Consensus 439 g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~~~~~~~~~-~~~---~~~v~~~L~~-~GI~~~~~------~~~~l 507 (985)
+ .++++.++..++.+++.+.|++.| +++..+....-+.+. .+. +.++.+.|.+ +||.+... .++.+
T Consensus 292 ~--~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gv~v~~g~~f~~~~~~~i 368 (400)
T 3asa_A 292 L--PQLEAIHYYRENSDLLRKALLATG-FEVFGGEHAPYLWVKPTQANISDRDLFDFFLREYHIAITPGIGFGRSGSGFV 368 (400)
T ss_dssp T--TTCHHHHHHHHHHHHHHHHHHHTT-CEEEECSSSSEEEEECCCTTCCTTTHHHHHHHHHSEECEEGGGGCGGGTTCE
T ss_pred H--HHHHHHHHHHHHHHHHHHHHHHCC-CeeeCCCCceEEEEeccCCCCCHHHHHHHHHHhCCEEEeChhHhCCCCCCEE
Confidence 1 467788888899999999999887 887632212224455 442 5577887765 59987542 14689
Q ss_pred EEEeccCCCHHHHHHHHHHHhCC
Q 001989 508 TASFDETTTLEDVDKLFIVFAGG 530 (985)
Q Consensus 508 ris~t~~~t~edId~li~aL~~~ 530 (985)
|+++ ++|++||+++++.|+..
T Consensus 369 Ris~--~~~~e~i~~~l~~l~~~ 389 (400)
T 3asa_A 369 RFSS--LGKREDILAACERLQMA 389 (400)
T ss_dssp EEEC--CSCHHHHHHHHHHHHC-
T ss_pred EEEe--eCCHHHHHHHHHHHHHH
Confidence 9994 68999999999999853
|
| >3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural genomics, center for structural genomics O infectious diseases; 1.80A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=99.52 E-value=4.3e-12 Score=145.27 Aligned_cols=277 Identities=13% Similarity=0.134 Sum_probs=169.8
Q ss_pred HHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhh-hh--c-CCCCEEEEcCCCC-hhHHHHHH--------HhhcC
Q 001989 212 SLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNN-IQ--K-GKKKTFIIASNCH-PQTIDICI--------TRADG 278 (985)
Q Consensus 212 ~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~-~~--~-~~g~~Vlv~~~~H-~s~~~~~~--------~~a~~ 278 (985)
...++++.+++++|. .++.+++|||.++++++.+.+ .. + .++++||+.+..| ......+. .....
T Consensus 79 ~~~~l~~~la~~~~~--~~v~~~~gg~ea~~~al~~~~~~~~~~g~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~ 156 (395)
T 3nx3_A 79 NIAAAAKNLAKASAL--ERVFFTNSGTESIEGAMKTARKYAFNKGVKGGQFIAFKHSFHGRTLGALSLTANEKYQKPFKP 156 (395)
T ss_dssp HHHHHHHHHHHHHTC--SEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCEEEEETTCCCCSSHHHHTTCCCHHHHGGGCS
T ss_pred HHHHHHHHHHHhcCC--CeEEEeCCHHHHHHHHHHHHHHHhhccCCCCCEEEEEcCCcCCCCHHHHhhcCCcccccccCC
Confidence 345677899999984 458899999988887775432 20 0 2568888766544 44333321 11122
Q ss_pred CCeEEEEeC---chhhhc-cCCCEeEEEEEcC-CCCeeecc----HHHHHHHHHhCCcEEEEEecCcc-ccCCCCC---C
Q 001989 279 FDIKVVVSD---LKDIDY-KSGDVCGVLVQYP-GTEGEVLD----YGDFIKNAHANGVKVVMATDLLA-LTILKPP---G 345 (985)
Q Consensus 279 ~gi~v~~v~---~~~l~~-l~~~t~~V~v~~p-n~~G~v~d----i~~I~~~a~~~galliV~a~~~~-lg~l~~~---~ 345 (985)
.+.++..++ +++|++ +++++++|++..+ |..|.+.+ +++|.++|+++|+++++|. .++ +|..... .
T Consensus 157 ~~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De-v~~~~g~~g~~~~~~ 235 (395)
T 3nx3_A 157 LISGVKFAKYNDISSVEKLVNEKTCAIILESVQGEGGINPANKDFYKALRKLCDEKDILLIADE-IQCGMGRSGKFFAYE 235 (395)
T ss_dssp CCSCEEEECTTCHHHHHTTCCTTEEEEEEESEECTTSCEECCHHHHHHHHHHHHHHTCEEEEEC-TTTTTTTTSSSSGGG
T ss_pred CCCCcEEeCCCCHHHHHHhccCCeEEEEEeCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEe-cccCCCcCCcchhHH
Confidence 344566654 466777 8888999988764 67888877 9999999999999999953 332 4322111 1
Q ss_pred c--ccceEEEecCccccccCCCCCCcEEEEEEchhh-HhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccc
Q 001989 346 E--LGADIVVGSAQRFGVPMGYGGPHAAFLATSQEY-KRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICT 422 (985)
Q Consensus 346 ~--~GaDi~v~s~k~lg~P~~~GGP~~G~l~~~~~~-~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t 422 (985)
. ...|+++. +|+|++ |..+|++.+++++ .+.+.....+ .|.+. +
T Consensus 236 ~~~~~~d~~t~-sK~~~~-----G~~~G~~~~~~~~~~~~~~~~~~~--------------------------~~~~~-~ 282 (395)
T 3nx3_A 236 HAQILPDIMTS-AKALGC-----GLSVGAFVINQKVASNSLEAGDHG--------------------------STYGG-N 282 (395)
T ss_dssp GGTCCCSEEEE-CGGGTT-----TSCCEEEEECHHHHHHHSCTTCCS--------------------------SCBSC-C
T ss_pred hcCCCCCEEEe-cccccC-----CCceEEEEEchhhhhhhcCCcccC--------------------------CCCCC-C
Confidence 2 23576654 388852 3457899999988 7766321111 11111 1
Q ss_pred hhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcC----CCeEEcC-CCCcceEEEecC-CHHHHHHHHHHcC
Q 001989 423 AQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKL----GTVEVQG-LPFFDTVKVKCA-DAHAIASAAYKIE 496 (985)
Q Consensus 423 ~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~----g~~~~~~-~~~~~~~~~~~~-~~~~v~~~L~~~G 496 (985)
+.+..+..+++ ..+.. +++.++..++.+++++.|+++ +.+.... ...+-.+.+... .+.++.+.|.++|
T Consensus 283 ~~~~~aa~aal--~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~G 357 (395)
T 3nx3_A 283 PLVCAGVNAVF--EIFKE---EKILENVNKLTPYLEQSLDELINEFDFCKKRKGLGFMQGLSLDKSVKVAKVIQKCQENA 357 (395)
T ss_dssp HHHHHHHHHHH--HHHHH---TTHHHHHHHHHHHHHHHHHHHHHHCTTEEEEEEETTEEEEEECTTSCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHH--HHHHh---hHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeEEEEEEEEeCCcchHHHHHHHHHHCC
Confidence 11222222222 32222 234555566666666666543 2232221 112212333222 2788999999999
Q ss_pred ceeeeecCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 497 MNLRVVDSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 497 I~~~~~~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
|.++....+.+|++++..+|++|+|+++++|++
T Consensus 358 i~v~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~ 390 (395)
T 3nx3_A 358 LLLISCGENDLRFLPPLILQKEHIDEMSEKLRK 390 (395)
T ss_dssp EECEEETTTEEEECCCTTCCHHHHHHHHHHHHH
T ss_pred CEEecCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 998876678999999999999999999999874
|
| >2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine aminotransferase (EC 2.6.1.11) (ACOA structural genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8} PDB: 2e54_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=2.8e-13 Score=155.34 Aligned_cols=272 Identities=14% Similarity=0.134 Sum_probs=171.2
Q ss_pred HHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhc----CCCCEEEEcC-CCChhHHHHHHHhhcCCCeE----
Q 001989 212 SLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQK----GKKKTFIIAS-NCHPQTIDICITRADGFDIK---- 282 (985)
Q Consensus 212 ~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~----~~g~~Vlv~~-~~H~s~~~~~~~~a~~~gi~---- 282 (985)
...++++.+++++|. .++.+++|||.++++++.+..... .++++||+.+ ..|.++...++.. |.+
T Consensus 83 ~~~~l~~~la~~~g~--~~v~~~~gg~~a~~~al~~~~~~~~~~~~~~~~vi~~~~~yh~~~~~~~~~~----g~~~~~~ 156 (397)
T 2ord_A 83 PQMELAELLSKNTFG--GKVFFANTGTEANEAAIKIARKYGKKKSEKKYRILSAHNSFHGRTLGSLTAT----GQPKYQK 156 (397)
T ss_dssp HHHHHHHHHHHTTTS--CEEEEESSHHHHHHHHHHHHHHHHHHHCTTCCEEEEEBTCCCCSSHHHHHHS----BCHHHHG
T ss_pred HHHHHHHHHHHhcCC--CeEEEeCCHHHHHHHHHHHHHHHhhcCCCCCceEEEEcCCcCCCchhhhhcc----CChhhcc
Confidence 345677899999985 458889999988887775543100 1346777665 5666666555431 221
Q ss_pred --------EEEe---Cchhhhc-cCCCEeEEEEEcC-CCCeee----ccHHHHHHHHHhCCcEEEEEecCcc-ccCCCCC
Q 001989 283 --------VVVS---DLKDIDY-KSGDVCGVLVQYP-GTEGEV----LDYGDFIKNAHANGVKVVMATDLLA-LTILKPP 344 (985)
Q Consensus 283 --------v~~v---~~~~l~~-l~~~t~~V~v~~p-n~~G~v----~di~~I~~~a~~~galliV~a~~~~-lg~l~~~ 344 (985)
+..+ |+++|++ +++++++|++++| |.+|.+ +++++|.++|+++|+++++| +..+ ++....+
T Consensus 157 ~~~p~~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~nptG~~~~~~~~l~~l~~l~~~~~~~li~D-e~~~~~~~~g~~ 235 (397)
T 2ord_A 157 PFEPLVPGFEYFEFNNVEDLRRKMSEDVCAVFLEPIQGESGIVPATKEFLEEARKLCDEYDALLVFD-EVQCGMGRTGKL 235 (397)
T ss_dssp GGCSCCTTEEEECTTCHHHHHHHCCTTEEEEEECSEECTTTCEECCHHHHHHHHHHHHHHTCEEEEE-CTTTTTTTTSSS
T ss_pred ccCCCCCCeeEecCCCHHHHHHHhhcCeEEEEEecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEE-ecccCCccCccc
Confidence 4444 3466777 7889999999887 789983 68999999999999999995 3333 3211111
Q ss_pred ---Cccc--ceEEEecCccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCC
Q 001989 345 ---GELG--ADIVVGSAQRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSN 419 (985)
Q Consensus 345 ---~~~G--aDi~v~s~k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsn 419 (985)
..+| +|+++. +|+|+. |-.+|++++++++. .+.. +. ...|.+
T Consensus 236 ~~~~~~~~~~d~~s~-sK~~~~-----G~r~G~~~~~~~~~-~l~~----------~~----------------~~~~~~ 282 (397)
T 2ord_A 236 FAYQKYGVVPDVLTT-AKGLGG-----GVPIGAVIVNERAN-VLEP----------GD----------------HGTTFG 282 (397)
T ss_dssp SHHHHHTCCCSEEEE-CGGGGT-----TSCCEEEEECSTTC-CCCT----------TS----------------SCCSST
T ss_pred hhhhhhCCCCCeeee-ccccCC-----CcCeEEEEEchHhc-ccCC----------CC----------------cCCCCC
Confidence 2344 787754 488852 33468888887654 4311 00 001111
Q ss_pred ccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCC-CeEEcC--CCCcceEEEecCC---HHHHHHHHH
Q 001989 420 ICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLG-TVEVQG--LPFFDTVKVKCAD---AHAIASAAY 493 (985)
Q Consensus 420 i~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g-~~~~~~--~~~~~~~~~~~~~---~~~v~~~L~ 493 (985)
. ++....+..++ +..+.. +++.++..++.+++.+.|++++ ++.++. .+...-+.+.+++ ..++.+.|.
T Consensus 283 ~-~~~~~~a~~~~--l~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~l~ 356 (397)
T 2ord_A 283 G-NPLACRAGVTV--IKELTK---EGFLEEVEEKGNYLMKKLQEMKEEYDVVADVRGMGLMIGIQFREEVSNREVATKCF 356 (397)
T ss_dssp T-CHHHHHHHHHH--HHHHTS---TTHHHHHHHHHHHHHHHHHHHHHHCTTEEEEEEETTEEEEEECTTSCHHHHHHHHH
T ss_pred C-CHHHHHHHHHH--HHHHHh---CCHHHHHHHHHHHHHHHHHHHHHhCCceEEEEEEeEEEEEEECChHHHHHHHHHHH
Confidence 1 11122222222 344433 3566777888888888887752 122110 1111223444442 788999999
Q ss_pred HcCceeeeecCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 494 KIEMNLRVVDSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 494 ~~GI~~~~~~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
++||.+....++.+|++++..+|++|+++++++|.+
T Consensus 357 ~~gi~v~~~~~~~iRis~~~~~~~e~i~~~~~~l~~ 392 (397)
T 2ord_A 357 ENKLLVVPAGNNTIRFLPPLTVEYGEIDLAVETLKK 392 (397)
T ss_dssp HTTEECEEETTTEEEECCCTTCCHHHHHHHHHHHHH
T ss_pred HCCCEEccCCCCEEEEECCcCCCHHHHHHHHHHHHH
Confidence 999988765568899999999999999999999874
|
| >3bwn_A AT1G70560, L-tryptophan aminotransferase; auxin synthesis, pyridoxal-5'- phosphate, indole-3-pyruvate; HET: LLP PMP PHE; 2.25A {Arabidopsis thaliana} PDB: 3bwo_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=2.2e-14 Score=164.55 Aligned_cols=278 Identities=10% Similarity=0.017 Sum_probs=160.9
Q ss_pred HHHHHHHHHhC---C--Cc-cceecCcHH-HHHHHHHHHHHHHHHhcCCCCCC----EEEEcCCCCcccHHHHHHCCcEE
Q 001989 636 NLGEWLCTITG---F--DS-FSLQPNAGA-AGEYAGLMVIRAYHKARGDHHRN----VCIIPVSAHGTNPATAAMCGMKI 704 (985)
Q Consensus 636 e~~~~la~l~G---~--~~-~~~~~~sGa-~a~~a~l~air~~~~~~g~~~~~----~IIv~~~~Hg~~~~~a~~~G~~v 704 (985)
++++.++++++ . +. ..+..++|+ ++... +++.+. .++| +|+++++.|..+...++..|+++
T Consensus 72 ~lr~aia~~~~~~g~~~~~~~~i~~t~G~~~al~~---~~~~l~-----~~Gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~ 143 (391)
T 3bwn_A 72 ELEDAIKDLHGVVGNAATEDRYIVVGTGSTQLCQA---AVHALS-----SLARSQPVSVVAAAPFYSTYVEETTYVRSGM 143 (391)
T ss_dssp HHHHHHHHHHHHHCSBCCSSSEEEEEEHHHHHHHH---HHHHHH-----HTSSSSSEEEEECSSCCTHHHHHHHTTCBTT
T ss_pred HHHHHHHHHHHhcCCCCCCCCeEEEeCChHHHHHH---HHHHhc-----CCCCCCcceEEEcCCCchhHHHHHHHcCCeE
Confidence 45555555554 2 22 345555555 44433 333332 2567 89999998888888888899998
Q ss_pred EEEcCCCCCCCCHHHHHHHHHhcCCCEEEEEEEcCC-CccccccCHHHHHHHHHHcCCEEEEEccccccc-cCCCCCCcc
Q 001989 705 VSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPS-THGVYEEGIDEICKIIHDNGGQVYMDGANMNAQ-VGLTSPGYI 782 (985)
Q Consensus 705 v~v~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~pn-~~G~i~~di~eI~~la~~~galliVD~a~~~~~-~~l~~pg~~ 782 (985)
+.+++|.++ ++ . +++++|++++|| ++|.+. + +|++.++++++++++|+++.... ..+. ...
T Consensus 144 ~~~~~d~~~------l~---~---~~~k~v~l~~p~NPtG~~~-~--~l~~~~~~~~~~ii~De~y~~~~~~~l~--~~~ 206 (391)
T 3bwn_A 144 YKWEGDAWG------FD---K---KGPYIELVTSPNNPDGTIR-E--TVVNRPDDDEAKVIHDFAYYWPHYTPIT--RRQ 206 (391)
T ss_dssp EEEEEESTT------CC---C---CSCEEEEEESSCTTTCCCC-C--CCC-----CCCEEEEECTTCSTTTSCCC--CCB
T ss_pred EEecCCHHH------cC---C---CCCEEEEECCCCCCCchhH-H--HHHHHhhcCCCEEEEeCCCCCCCCCccc--cCC
Confidence 888876432 11 1 578899999994 799987 3 56553344459999999985311 1111 134
Q ss_pred CCcEEEeCCcccccccCCCCCCceEEEEE-cccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHH
Q 001989 783 GADVCHLNLHKTFCIPHGGGGPGMGPIGV-KKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIA 861 (985)
Q Consensus 783 g~Di~~~s~hK~l~~p~g~GGPg~G~i~~-~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~ 861 (985)
+.++++.|++|+|++| |.++|++++ ++++.+.+.... .....+.+ ..++. ++..+|.
T Consensus 207 ~~~i~~~S~SK~~g~~----GlRiG~~~~~~~~l~~~l~~~~------------~~~~~~~~--~~~q~----a~~~~l~ 264 (391)
T 3bwn_A 207 DHDIMLFTFSKITGHA----GSRIGWALVKDKEVAKKMVEYI------------IVNSIGVS--KESQV----RTAKILN 264 (391)
T ss_dssp CCSEEEEEHHHHHSCG----GGCEEEEEECCHHHHHHHHHHH------------HHHHSSCC--HHHHH----HHHHHHH
T ss_pred CCeEEEEechhhcCCC----ccceEEEEecCHHHHHHHHHHh------------cccccCCC--HHHHH----HHHHHHh
Confidence 5789999999999654 677899998 666654432110 00001111 11121 1223333
Q ss_pred Hhc---------HHHHHHHHHHHHHHHHHHHHHhhccCCeeecCCCCceee-----------EEEEEecCccccCCCCHH
Q 001989 862 MMG---------SKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAH-----------EFIVDLRGLKNTAGIEPE 921 (985)
Q Consensus 862 ~lg---------~eGl~~~~~~~~~~a~~l~~~L~~g~~l~~~~~~~~~~~-----------~~iv~~~~~~~~~g~~~~ 921 (985)
.-. .+.+++..+...++++++.+.|++...+.+..+.+...+ -+.++++ + .+
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~p~~~~~~f~~~~~~~~g~~~~~~~~------~--~~ 336 (391)
T 3bwn_A 265 VLKETCKSESESENFFKYGREMMKNRWEKLREVVKESDAFTLPKYPEAFCNYFGKSLESYPAFAWLGTK------E--ET 336 (391)
T ss_dssp HHHHHTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHTCSSEECCCCCCEEETTTTEEECCCCSEEEEEES------S--SC
T ss_pred CcchhccccccHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccCCccccccccccCCCcceEEEecCC------c--HH
Confidence 210 234566666778888999999986312322211111100 1335553 1 23
Q ss_pred HHHHHHHHCCCccCCC-CCCC-CCEEEEeccCCCCHHHHHHHHccCChhHHHH
Q 001989 922 DVAKRLMDYGFHGPTM-SWPV-PGTLMIEPTESESKSWTGIVMLSSPSEKKLH 972 (985)
Q Consensus 922 ~v~~~L~~~Gi~~~~~-~~p~-~~~lris~t~~~t~eeId~~~~~~~l~~~~~ 972 (985)
.+.+.|.++||.+... .|.. .+++||++. +++++|++ +++.|+++++
T Consensus 337 ~~~~~l~~~gV~v~pg~~fg~~~~~iRis~~--~~~e~i~~--~~~~L~~~~~ 385 (391)
T 3bwn_A 337 DLVSELRRHKVMSRAGERCGSDKKHVRVSML--SREDVFNV--FLERLANMKL 385 (391)
T ss_dssp CHHHHHHHTTEECEEGGGGTCCTTEEEEESC--SCHHHHHH--HHHHHHSCC-
T ss_pred HHHHHHHHCCEEEccCCCCCCCCCEEEEEec--CCHHHHHH--HHHHHHHHHH
Confidence 5667788899987532 2322 579999998 38999999 6666666554
|
| >2aeu_A Hypothetical protein MJ0158; selenocysteine synthase, PLP, pyridoxal phosphate, HOMO- oligomerization, unknown function; 1.70A {Methanocaldococcus jannaschii} SCOP: c.67.1.8 PDB: 2aev_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=5.5e-13 Score=152.04 Aligned_cols=157 Identities=18% Similarity=0.157 Sum_probs=112.3
Q ss_pred HHHHHHHHHhcCCC-CcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEe-Cchhh
Q 001989 214 LNFQTMIADLTGLP-MSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVS-DLKDI 291 (985)
Q Consensus 214 ~e~q~~ia~L~g~~-~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v-~~~~l 291 (985)
.++++.+++++|.+ +.++.++.|||.+++.++.++ +||+|+++...|+.....+. .++..|++++.+ |++++
T Consensus 61 ~~~~~~~a~~~g~~~~~~~~~~~ggt~a~~~~~~~~-----~gd~Vl~~~~~y~~~~~~~~-~~~~~g~~~~~v~d~~~l 134 (374)
T 2aeu_A 61 EKVNEYGLKHLGGDENDKCVGFNRTSSAILATILAL-----KPKKVIHYLPELPGHPSIER-SCKIVNAKYFESDKVGEI 134 (374)
T ss_dssp HHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHH-----CCSEEEEECSSSSCCTHHHH-HHHHTTCEEEEESCHHHH
T ss_pred HHHHHHHHHHhCCCCcceEEEEcChHHHHHHHHHhC-----CCCEEEEecCCCCccHHHHH-HHHHcCcEEEEeCCHHHH
Confidence 34556678899983 346778899998777666543 78999999986655444332 233467777766 55566
Q ss_pred hccCCCEeE-EEEEcC-CCCe-eeccHHHHHHHHHhCCcEEEEEecCccccC---C-CC-CCcccceEEEecC-cccccc
Q 001989 292 DYKSGDVCG-VLVQYP-GTEG-EVLDYGDFIKNAHANGVKVVMATDLLALTI---L-KP-PGELGADIVVGSA-QRFGVP 362 (985)
Q Consensus 292 ~~l~~~t~~-V~v~~p-n~~G-~v~di~~I~~~a~~~galliV~a~~~~lg~---l-~~-~~~~GaDi~v~s~-k~lg~P 362 (985)
++.++++++ |++.+| |++| .+.|+++|.++||++|+++++|. ..+.+. . .. +..+|+|++++|. |.+
T Consensus 135 ~~~~~~~~~~v~~~~p~nptG~~~~~l~~i~~l~~~~~~~li~De-~~~~~~~~~~~~~~~~~~~~di~~~S~sK~l--- 210 (374)
T 2aeu_A 135 LNKIDKDTLVIITGSTMDLKVIELENFKKVINTAKNKEAIVFVDD-ASGARVRLLFNQPPALKLGADLVVTSTDKLM--- 210 (374)
T ss_dssp HTTCCTTEEEEEECBCTTSCBCCHHHHHHHHHHHHHHTCCEEEEC-TTHHHHHHHTTCCCHHHHTCSEEEEETTSSS---
T ss_pred HhcCCCccEEEEEccCCCCCCCCcccHHHHHHHHHHcCCEEEEEC-CcccccccccccCCccccCCcEEEecCcccc---
Confidence 544557899 888888 6788 88999999999999999999954 333322 1 11 3457899999998 654
Q ss_pred CCCCCCcEEEEEEchhhHhcC
Q 001989 363 MGYGGPHAAFLATSQEYKRMM 383 (985)
Q Consensus 363 ~~~GGP~~G~l~~~~~~~~~l 383 (985)
|||.+|++++++++++++
T Consensus 211 ---~g~~~G~~~~~~~~~~~l 228 (374)
T 2aeu_A 211 ---EGPRGGLLAGKKELVDKI 228 (374)
T ss_dssp ---SSCSCEEEEEEHHHHHHH
T ss_pred ---cCcceEEEEECHHHHHHH
Confidence 346779999998887655
|
| >3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like fold structural genomics, joint center for structural genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.50 E-value=1.7e-12 Score=150.47 Aligned_cols=272 Identities=14% Similarity=0.130 Sum_probs=172.5
Q ss_pred HHHHHHHHHhcCCCCcceeeccchHHHH--HHHHHHhhhhcCC----------CCEEEEcCCCChhHHHHHHHhhcCCCe
Q 001989 214 LNFQTMIADLTGLPMSNASLLDEGTAAA--EAMAMCNNIQKGK----------KKTFIIASNCHPQTIDICITRADGFDI 281 (985)
Q Consensus 214 ~e~q~~ia~L~g~~~~~~sl~~~~ta~~--ea~~~a~~~~~~~----------g~~Vlv~~~~H~s~~~~~~~~a~~~gi 281 (985)
.++++.+|++++.++.++.+++|++.++ +.+..++. ...+ ||+|+++.-.|+.+...++. .|.
T Consensus 81 ~~lr~~ia~~~~~~~~~i~~t~G~~~al~~~~~~~~l~-~~~~g~~~~~~~~~gd~V~v~~p~y~~~~~~~~~----~g~ 155 (427)
T 3ppl_A 81 VDIRQIWADLLGVPVEQVLAGDASSLNIMFDVISWSYI-FGNNDSVQPWSKEETVKWICPVPGYDRHFSITER----FGF 155 (427)
T ss_dssp HHHHHHHHHHHTSCGGGEEECSSCHHHHHHHHHHHHHH-HCCTTCSSCGGGSSCCEEEEEESCCHHHHHHHHH----TTC
T ss_pred HHHHHHHHHHhCCCcceEEEeCCcHHHHHHHHHHHHHh-ccCCcccccccCCCCCEEEEcCCCcHHHHHHHHH----cCC
Confidence 4578899999999989999999999877 34444432 1013 89999999999999888754 577
Q ss_pred EEEEeCc-------hhhhc-c-CCCEeEEEEE-cC-CCCeeeccHH---HHHHHH-HhCCcEEEEEecCccccCCC----
Q 001989 282 KVVVSDL-------KDIDY-K-SGDVCGVLVQ-YP-GTEGEVLDYG---DFIKNA-HANGVKVVMATDLLALTILK---- 342 (985)
Q Consensus 282 ~v~~v~~-------~~l~~-l-~~~t~~V~v~-~p-n~~G~v~di~---~I~~~a-~~~galliV~a~~~~lg~l~---- 342 (985)
+++.++. ++|++ + ++++++|+++ +| |.+|.+.+.+ +|+++| +++|+++++|. ..+...+.
T Consensus 156 ~~~~v~~~~~g~d~~~l~~~l~~~~~~~v~~~p~~~NPtG~~~~~~~~~~l~~~a~~~~~~~ii~De-~y~~~~~~~~~~ 234 (427)
T 3ppl_A 156 EMISVPMNEDGPDMDAVEELVKNPQVKGMWVVPVFSNPTGFTVTEDVAKRLSAMETAAPDFRVVWDN-AYAVHTLTDEFP 234 (427)
T ss_dssp EEEEEEEETTEECHHHHHHHTTSTTEEEEEECCSSCTTTCCCCCHHHHHHHHHCCCSSTTCEEEEEC-TTTTCBSSSCCC
T ss_pred EEEEeCCCCCCCCHHHHHHHHhcCCCeEEEECCCCCCCCCccCCHHHHHHHHHHHhhcCCCEEEEEC-CCcccccCCCCC
Confidence 7777653 45666 6 4789998876 55 8899998776 888888 99999999953 33321111
Q ss_pred C----------CCcccceEEEecC-ccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccc
Q 001989 343 P----------PGELGADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHI 411 (985)
Q Consensus 343 ~----------~~~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~i 411 (985)
. ++..+.+|+++|. |. +.| |-.+|++.+++++++.+...
T Consensus 235 ~~~~~~~~~~~~~~~~~~i~~~S~SK~-~~~----G~r~G~~~~~~~l~~~~~~~------------------------- 284 (427)
T 3ppl_A 235 EVIDIVGLGEAAGNPNRFWAFTSTSKI-TLA----GAGVSFFLTSAENRKWYTGH------------------------- 284 (427)
T ss_dssp CCCCHHHHHHHTTCTTSEEEEEESTTT-SCT----TSSCEEEECCHHHHHHHHHH-------------------------
T ss_pred CccchhhhhhccCCCCcEEEEechhhc-cCc----CccEEEEEcCHHHHHHHHHH-------------------------
Confidence 0 1245678999997 66 433 34579999888877655110
Q ss_pred cccccCCCccchhHHHHHHHHHHHHHhCc-----chHHHHHHHHHHHHHHHHHHH----hcCCCeEEcCCCCcceEEEec
Q 001989 412 RRDKATSNICTAQALLANMAAMYAVYHGP-----EGLKTIAQRVHGLAGTFALGL----KKLGTVEVQGLPFFDTVKVKC 482 (985)
Q Consensus 412 rre~atsni~t~~~l~a~~aa~~l~~~g~-----~Gl~~i~~~~~~~a~~l~~~L----~~~g~~~~~~~~~~~~~~~~~ 482 (985)
+.. ...+++......++ .++.. +-+++..+...++.+++.+.| .++|++++..+....-+.+++
T Consensus 285 ~~~---~~~~~~~~~q~~~~----~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~l~~~~~~~~~~p~~g~~~~~~~ 357 (427)
T 3ppl_A 285 AGI---RGIGPNKVNQLAHA----RYFGDAEGVRAVMRKHAASLAPKFNKVLEILDSRLAEYGVAQWTVPAGGYFISLDV 357 (427)
T ss_dssp HHH---HCSCCCHHHHHHHH----HHHCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTCCEECCCSBSSCEEEEC
T ss_pred hhc---ccCCCCHHHHHHHH----HHHhChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEeCCCccEEEEEEC
Confidence 000 00111111111111 11211 123344444444444554444 444336654321112244555
Q ss_pred CC--HHHHHHHHHHcCceeee----------ecCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 483 AD--AHAIASAAYKIEMNLRV----------VDSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 483 ~~--~~~v~~~L~~~GI~~~~----------~~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
++ ..++.+.|.++||.+.. ...+.+|+|+... ++++|+++++.|.+
T Consensus 358 ~~~~~~~~~~~l~~~gv~v~~~g~~~~~~~~~~~~~~Ris~~~~-~~~~i~~~~~~l~~ 415 (427)
T 3ppl_A 358 VPGTASRVAELAKEAGIALTGAGSSYPLRQDPENKNLRLAPSLP-PVEELEVAMDGVAT 415 (427)
T ss_dssp STTCHHHHHHHHHHTTEECCCTTTTSGGGCCTTSCEEEECCSSS-CHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHCCCEEecCcCcCCCCCCCCCCeEEEECCCC-CHHHHHHHHHHHHH
Confidence 54 78899999999998754 1247899999655 99999999998874
|
| >3h7f_A Serine hydroxymethyltransferase 1; cytoplasm, one-carbon metabolism, pyridoxal phosphate, structural genomics; HET: LLP; 1.50A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.50 E-value=7.6e-13 Score=154.56 Aligned_cols=275 Identities=13% Similarity=0.104 Sum_probs=171.7
Q ss_pred HHHHHH-HHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHH-HHHH-HhhcCCCeEEEEe--
Q 001989 212 SLLNFQ-TMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTI-DICI-TRADGFDIKVVVS-- 286 (985)
Q Consensus 212 ~i~e~q-~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~-~~~~-~~a~~~gi~v~~v-- 286 (985)
.+.++. +.+++++|++..++ ++.+||.++++++.++. ++||+|++++..|++.. .... ... +.++.++.+
T Consensus 91 ~~e~~a~~~la~~~g~~~~~v-~~~sGs~a~~~a~~~~~---~~Gd~Vl~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~ 165 (447)
T 3h7f_A 91 VVENLARDRAKALFGAEFANV-QPHSGAQANAAVLHALM---SPGERLLGLDLANGGHLTHGMRLNFS-GKLYENGFYGV 165 (447)
T ss_dssp HHHHHHHHHHHHHHTCSEEEC-CCSSHHHHHHHHHHHHC---CTTCEEEEECGGGTCCGGGTCTTSHH-HHSSEEEEECC
T ss_pred HHHHHHHHHHHHHcCCCceEE-EeCCHHHHHHHHHHHhc---CCCCEEEecCcccccccchhhhhhhc-CCeeEEEEcCc
Confidence 334444 89999999987433 36777877777666542 38999999998887621 1110 001 123344333
Q ss_pred -------Cchhhhc-cC-CCEeEEEEEcCCCCeeeccHHHHHHHHHhCCcEEEEEecCcccc-----CCCCCCcccceEE
Q 001989 287 -------DLKDIDY-KS-GDVCGVLVQYPGTEGEVLDYGDFIKNAHANGVKVVMATDLLALT-----ILKPPGELGADIV 352 (985)
Q Consensus 287 -------~~~~l~~-l~-~~t~~V~v~~pn~~G~v~di~~I~~~a~~~galliV~a~~~~lg-----~l~~~~~~GaDi~ 352 (985)
|++++++ +. .++++|++.+|++ +...|+++|.++|+++|+++++|. .++.| ....+. .++|++
T Consensus 166 ~~~~~~~d~~~l~~~i~~~~~~~i~~~~~~~-~~~~~l~~i~~l~~~~g~lli~De-a~~~g~~~~g~~~~~~-~~~di~ 242 (447)
T 3h7f_A 166 DPATHLIDMDAVRATALEFRPKVIIAGWSAY-PRVLDFAAFRSIADEVGAKLLVDM-AHFAGLVAAGLHPSPV-PHADVV 242 (447)
T ss_dssp CTTTCSCCHHHHHHHHHHHCCSEEEEECSSC-CSCCCHHHHHHHHHHHTCEEEEEC-TTTHHHHHTTSSCCST-TTCSEE
T ss_pred CcccCCcCHHHHHHHHHhcCCeEEEEcCCCC-CCccCHHHHHHHHHHcCCEEEEEC-CchhhhhcCCCCCCCC-CCCcEE
Confidence 3356665 53 4577788776643 233399999999999999999953 33332 222222 368999
Q ss_pred EecC-ccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHH
Q 001989 353 VGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMA 431 (985)
Q Consensus 353 v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~a 431 (985)
+.+. |+|+ ||-.|++++++++.+.+.... .. + ..++++. ....+..+
T Consensus 243 ~~s~sK~l~------G~~gG~i~~~~~~~~~l~~~~---------~~-~-------------~~~~~~~---~~~~a~~~ 290 (447)
T 3h7f_A 243 STTVHKTLG------GGRSGLIVGKQQYAKAINSAV---------FP-G-------------QQGGPLM---HVIAGKAV 290 (447)
T ss_dssp EEESSGGGC------CCSCEEEEECGGGHHHHHHHH---------TT-T-------------TCSSCCH---HHHHHHHH
T ss_pred EecCCcCCC------CCCeEEEEECHHHHHHHhhhc---------CC-c-------------ccCCccH---HHHHHHHH
Confidence 9997 7764 454589988887665541100 00 0 0112221 22333333
Q ss_pred HHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcC-----CCeEEcCC-CCcceEEEecC--C--HHHHHHHHHHcCceee-
Q 001989 432 AMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKL-----GTVEVQGL-PFFDTVKVKCA--D--AHAIASAAYKIEMNLR- 500 (985)
Q Consensus 432 a~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~-----g~~~~~~~-~~~~~~~~~~~--~--~~~v~~~L~~~GI~~~- 500 (985)
++ ..+..++++++.++..++++++.+.|++. | ++++.. ...+.+.+.+. + ...+.+.|.++||.+.
T Consensus 291 a~--~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GI~v~~ 367 (447)
T 3h7f_A 291 AL--KIAATPEFADRQRRTLSGARIIADRLMAPDVAKAG-VSVVSGGTDVHLVLVDLRDSPLDGQAAEDLLHEVGITVNR 367 (447)
T ss_dssp HH--HHTTSHHHHHHHHHHHHHHHHHHHHHTSHHHHHTT-CEEGGGSCSSSEEEEECTTSSCCHHHHHHHHHHTTEECBC
T ss_pred HH--HHhhCHHHHHHHHHHHHHHHHHHHHHHhccccCCC-eEEecCCCCCCEEEEEcCCCCCCHHHHHHHHHHCCeEEec
Confidence 33 34445578899999999999999999988 7 888642 22223444443 2 6677777888899876
Q ss_pred ---ee------cCCeEEEEeccC----CCHHHHHHHHHHHhC
Q 001989 501 ---VV------DSNTVTASFDET----TTLEDVDKLFIVFAG 529 (985)
Q Consensus 501 ---~~------~~~~lris~t~~----~t~edId~li~aL~~ 529 (985)
.. .++.+|+++... .|++|+++++++|.+
T Consensus 368 ~~i~~~~~~p~~~~~lRig~~~~~~~~~~~eei~~~~~~l~~ 409 (447)
T 3h7f_A 368 NAVPNDPRPPMVTSGLRIGTPALATRGFGDTEFTEVADIIAT 409 (447)
T ss_dssp -------------CEEEEECHHHHHHTCCHHHHHHHHHHHHH
T ss_pred ccCCCCCCCCCCCCceeccCHHHhhCCCCHHHHHHHHHHHHH
Confidence 22 246799988664 578999999998874
|
| >3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula} | Back alignment and structure |
|---|
Probab=99.50 E-value=1.7e-12 Score=149.88 Aligned_cols=329 Identities=13% Similarity=0.049 Sum_probs=192.7
Q ss_pred HHHHHHHHHHHhcC--CCccceecCCCCC-----CCCCcHHHHHHHHhCCc-cccccCCChhhHhhhHHHHHHHHHHHHH
Q 001989 150 ESQMIEHMQKLASM--NKVYKSFIGMGYY-----NTHVPPVILRNIMENPA-WYTQYTPYQAEIAQGRLESLLNFQTMIA 221 (985)
Q Consensus 150 e~e~~~~~~~l~~~--n~~~~~~lG~g~y-----~~~~p~~v~~~i~~~~~-~~t~~~pyq~e~sqg~l~~i~e~q~~ia 221 (985)
-.++.+.++++..+ +... --+|.|.| +...|+.+.+++..... ....|+|. +|. .++++.++
T Consensus 21 ~~~~~~~~~~~~~~~g~~~~-i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~~-----~g~----~~lr~~ia 90 (418)
T 3rq1_A 21 IFVTAGQAQADAKENGRENV-VNGTLGAIHDEEGNLVFLKTVKEEYLSLSDSEHVGYAPI-----AGI----PDFLCAAE 90 (418)
T ss_dssp HHHHHHHHHHHHHHHCGGGC-EECCSSCCBCTTSCBCCCHHHHHHHHTCCHHHHHSCCCT-----TCC----HHHHHHHH
T ss_pred HHHHHHHHHhhhhhhcCCCe-EECCCCcccCCCCCccccHHHHHHHHHhcccccCCCCCC-----CCh----HHHHHHHH
Confidence 34555555555443 2222 23467765 55677777655443221 13345543 222 23445555
Q ss_pred Hhc----CCC-CcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc--------
Q 001989 222 DLT----GLP-MSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL-------- 288 (985)
Q Consensus 222 ~L~----g~~-~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~-------- 288 (985)
+++ +.+ ..++.+++|+|.+++.++.++ . ++||+|+++...|+.+...++. .|.+++.++.
T Consensus 91 ~~~~~~~~~~~~~~i~~t~g~~~al~~~~~~l-~--~~gd~Vl~~~p~~~~~~~~~~~----~g~~~~~v~~~~~~~~~d 163 (418)
T 3rq1_A 91 KECFGNFRPEGHIRSIATAGGTGGIHHLIHNY-T--EPGDEVLTADWYWGAYRVICSD----TGRTLVTYSLFDEHNNFN 163 (418)
T ss_dssp HHHHGGGCCSSEEEEEEESHHHHHHHHHHHHH-S--CTTCEEEEESSCCTHHHHHHHH----TTCEEEEECSBCTTSSBC
T ss_pred HHHhcccCccccccEEECCchHHHHHHHHHHh-c--CCCCEEEECCCCchhHHHHHHH----cCCEEEEEeeeCCCCCcC
Confidence 543 433 116888999998888776654 2 3899999999999998887653 5888888764
Q ss_pred -hhhhc-cCC----CEe-EEEEEcC--CCCeeeccHHHHH---HHHH------hCCcEEEEEecCc-cccCC--------
Q 001989 289 -KDIDY-KSG----DVC-GVLVQYP--GTEGEVLDYGDFI---KNAH------ANGVKVVMATDLL-ALTIL-------- 341 (985)
Q Consensus 289 -~~l~~-l~~----~t~-~V~v~~p--n~~G~v~di~~I~---~~a~------~~galliV~a~~~-~lg~l-------- 341 (985)
+++++ +.+ +++ ++++.+| |++|.+.|.+++. ++|+ ++|+++++|. .. .++.-
T Consensus 164 ~~~l~~~l~~~~~~~~~~~vi~~~p~~NPtG~~~~~~~l~~l~~~~~~~~~~~~~~~~li~De-~y~~~~~~~~~~~~~~ 242 (418)
T 3rq1_A 164 HEAFQNRVNELAAKQTNVVVIFNTPGNNPTGYSIEDKDWDSILNFLKDLVAIGRNNVIIGIDV-AYLDYSGEKDEVRAFF 242 (418)
T ss_dssp HHHHHHHHHHHHHHCSEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHHHTSSCEEEEEEEC-TTGGGSSCHHHHHGGG
T ss_pred HHHHHHHHHHhhccCCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEec-ccccccCChHHHHHHH
Confidence 23444 442 455 7778877 7899998755554 5555 8999999953 32 22110
Q ss_pred CCCCcccce---EEEecC-ccccccCCCCCCcEEEEEE---chhhHhcCCCceeeeeecCCCCcceeeeccccccccccc
Q 001989 342 KPPGELGAD---IVVGSA-QRFGVPMGYGGPHAAFLAT---SQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRD 414 (985)
Q Consensus 342 ~~~~~~GaD---i~v~s~-k~lg~P~~~GGP~~G~l~~---~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre 414 (985)
.....++-| |+++|. |.|+.| |-.+|++.+ ++++++.+... + ++..+.
T Consensus 243 ~~~~~~~~~~~~i~~~S~sK~~~~~----G~r~G~~~~~~~~~~~~~~~~~~--------------------~-~~~~~~ 297 (418)
T 3rq1_A 243 NKFSHLPKEILTCVCYSLSKGFTMY----GQRVGAMIGISDDEEIADEFFEV--------------------N-KSTSRA 297 (418)
T ss_dssp GGGTTCCTTEEEEEEEESTTTTTCC----SSCCEEEEEEESSHHHHHHHHHH--------------------H-HHHHHH
T ss_pred HHHHhcCCCceEEEEEeCCCCCcCc----CCcceEEEEEeCCHHHHHHHHHH--------------------H-HHHHhh
Confidence 001112234 677776 877533 234688887 77777655100 0 000000
Q ss_pred ccCCCccchhHHHHHHHHHHHHHh-----CcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCCCcceE-EEecCCHHHH
Q 001989 415 KATSNICTAQALLANMAAMYAVYH-----GPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDTV-KVKCADAHAI 488 (985)
Q Consensus 415 ~atsni~t~~~l~a~~aa~~l~~~-----g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~~~~~~-~~~~~~~~~v 488 (985)
.+++.. ..+..++.+.+ ... -.+.++++.++..++.+++.+.|+++| +++..+. ..-+ .+..++..++
T Consensus 298 -~~~~~~-~~~~~a~~~~l--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~-~~~~~~~~~~~~~~~ 371 (418)
T 3rq1_A 298 -TWSNIC-RPAMRTMANIV--ADPAKFKEYEAERNCYYQLIRDRADIFKQEAAQVG-LPMLPYR-GGFFITIPTDSANAI 371 (418)
T ss_dssp -HTSSCC-HHHHHHHHHHH--TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-CCCCCCC-SSSEEEEECTTHHHH
T ss_pred -ccCCCc-hHHHHHHHHHh--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCCCCC-ceEEEEcCCCCHHHH
Confidence 001111 11111111111 100 012344666778888899999999886 7765321 1112 2344457889
Q ss_pred HHHHHHcCceeeeecCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 489 ASAAYKIEMNLRVVDSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 489 ~~~L~~~GI~~~~~~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
.+.|.++||.+... ++.+|+|++ ..|+++|+++++.|.+
T Consensus 372 ~~~l~~~gi~v~~g-~~~iRis~~-~~~~~~i~~~~~~l~~ 410 (418)
T 3rq1_A 372 CEELKKEHIYVIAL-ANGIRIAAC-GIPKCQMTGLAEKIYN 410 (418)
T ss_dssp HHHHHHTTEECEEC-SSEEEEEGG-GSCHHHHTTHHHHHHH
T ss_pred HHHHHhCCEEEecC-CCCeEEEEe-cCCHHHHHHHHHHHHH
Confidence 99999999988763 578999977 5699999999998874
|
| >3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.48 E-value=5.5e-12 Score=145.24 Aligned_cols=274 Identities=9% Similarity=0.008 Sum_probs=165.6
Q ss_pred HHHHHHHHHhc------CCCCcceeeccchHHHHHHHHHHhhhhcCCCC-----EEEEc-CCCChhHHHHHHHh--hcCC
Q 001989 214 LNFQTMIADLT------GLPMSNASLLDEGTAAAEAMAMCNNIQKGKKK-----TFIIA-SNCHPQTIDICITR--ADGF 279 (985)
Q Consensus 214 ~e~q~~ia~L~------g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~-----~Vlv~-~~~H~s~~~~~~~~--a~~~ 279 (985)
.++++.+|+++ +.++.++.+++|+|.+++.++.++. ++|| +|+++ .-.|+.+...+... ....
T Consensus 78 ~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~t~al~~~~~~l~---~~gd~~~~~~vi~~~~p~~~~~~~~~~~~~~~~~~ 154 (417)
T 3g7q_A 78 TALLNALAVLLRETLGWDIEPQNIALTNGSQSAFFYLFNLFA---GRRADGSTKKVLFPLAPEYIGYADSGLEDDLFVSA 154 (417)
T ss_dssp HHHHHHHHHHHHHHHCCCCCGGGEEEESCHHHHHHHHHHHHS---BC----CCBEEEESSCCCHHHHHC-----CCEEEC
T ss_pred HHHHHHHHHHHHHHhCCCCCcccEEEeCCcHHHHHHHHHHHc---CCCccCCcceEEEeCCCccccchhhccchhhhccc
Confidence 34667777776 5677899999999988877766542 2555 89998 77888777665321 1233
Q ss_pred CeEEEEeC---------chhhhccCCCEeEEEEEcC-CCCeeecc---HHHHHHHHHhCCcEEEEEecCcccc-----CC
Q 001989 280 DIKVVVSD---------LKDIDYKSGDVCGVLVQYP-GTEGEVLD---YGDFIKNAHANGVKVVMATDLLALT-----IL 341 (985)
Q Consensus 280 gi~v~~v~---------~~~l~~l~~~t~~V~v~~p-n~~G~v~d---i~~I~~~a~~~galliV~a~~~~lg-----~l 341 (985)
+..+..++ +++++ +++++++|++.+| |.+|.+.+ +++|+++|+++|+++++|. ..+.. ..
T Consensus 155 ~~~~~~~~~~~~~~~~d~~~l~-~~~~~~~v~~~~p~NptG~~~~~~~~~~l~~~a~~~~~~li~De-~~~~~~~~~~~~ 232 (417)
T 3g7q_A 155 RPNIELLPEGQFKYHVDFEHLH-IGEETGMICVSRPTNPTGNVITDEELMKLDRLANQHNIPLVIDN-AYGVPFPGIIFS 232 (417)
T ss_dssp CCEEEEEGGGEEEEECCGGGCC-CCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEEC-TTCTTTTCCBCS
T ss_pred cCcccccCCcccccccCHHHhc-cccCceEEEECCCCCCCCCccCHHHHHHHHHHHHHcCCEEEEeC-CCcccccccccc
Confidence 45555443 33344 5778999999998 78999987 8999999999999999953 33321 11
Q ss_pred -CCCCcccceEEEecC-ccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCC
Q 001989 342 -KPPGELGADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSN 419 (985)
Q Consensus 342 -~~~~~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsn 419 (985)
..+...+.+|+++|. | ++.| |-.+|++++++++.+.+... . +. .+
T Consensus 233 ~~~~~~~~~~i~~~s~sK-~~~~----G~r~G~~~~~~~~~~~~~~~----------~---------------~~---~~ 279 (417)
T 3g7q_A 233 EARPLWNPNIILCMSLSK-LGLP----GSRCGIIIANDKTITAIANM----------N---------------GI---IS 279 (417)
T ss_dssp CCCCCCCTTEEEEEESGG-GTCT----TSCCEEEECCHHHHHHHHHH----------H---------------HH---HC
T ss_pred ccccCCCCCEEEEEechh-ccCC----CcceEEEEeCHHHHHHHHHh----------h---------------cc---ee
Confidence 123346788999997 6 5432 33478998888877655110 0 00 01
Q ss_pred ccchhHHHHHHHHHHHHHhCcc-hHHH-HHHHHHHHHHHHHHHHhc----CCCeEEcCCCCcceEEEecC--C--HHHHH
Q 001989 420 ICTAQALLANMAAMYAVYHGPE-GLKT-IAQRVHGLAGTFALGLKK----LGTVEVQGLPFFDTVKVKCA--D--AHAIA 489 (985)
Q Consensus 420 i~t~~~l~a~~aa~~l~~~g~~-Gl~~-i~~~~~~~a~~l~~~L~~----~g~~~~~~~~~~~~~~~~~~--~--~~~v~ 489 (985)
.+++......+++ ++...... -+++ +.++..++.+++.+.|.+ +| +++..+....-+.+.++ + ..++.
T Consensus 280 ~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~l~ 357 (417)
T 3g7q_A 280 LAPGGMGPAMMCE-MIKRNDLLRLSETVIKPFYYQRVQQTIAIIRRYLSEER-CLIHKPEGAIFLWLWFKDLPITTELLY 357 (417)
T ss_dssp CCCCSHHHHHHHH-HHHTTCHHHHHHHTHHHHHHHHHHHHHHHHHHHCCTTT-CEEECCCBSSEEEEECTTCSSCHHHHH
T ss_pred eCCCcHHHHHHHH-HHcCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC-ceeeCCCcceEEEEEcCCCCCCHHHHH
Confidence 1111111111111 12211100 1112 444555566666666655 24 66653221112334443 2 78999
Q ss_pred HHHHHcCceeeee---c----------CCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 490 SAAYKIEMNLRVV---D----------SNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 490 ~~L~~~GI~~~~~---~----------~~~lris~t~~~t~edId~li~aL~~ 529 (985)
+.|.++||.+... . .+.+|+|++. |++||+++++.|.+
T Consensus 358 ~~l~~~gi~v~~g~~f~~~~~~~~~~~~~~iRis~~~--~~~~i~~~~~~l~~ 408 (417)
T 3g7q_A 358 QRLKARGVLMVPGHYFFPGLDKPWPHTHQCMRMNYVP--EPDKIEAGVKILAE 408 (417)
T ss_dssp HHHHHTTEECEEGGGGCTTBSSCCGGGGGEEEEESCS--CHHHHHHHHHHHHH
T ss_pred HHHHHCCEEEECchhhCCCCccccccCCCeEEEEecC--CHHHHHHHHHHHHH
Confidence 9999999987542 1 3589999985 99999999999874
|
| >3ht4_A Aluminum resistance protein; lyase, putative cystathionine BEAT-lyase, aluminium resistance protein, Q81A77_baccr, NESG, BCR213; 2.90A {Bacillus cereus atcc 14579} | Back alignment and structure |
|---|
Probab=99.47 E-value=9.9e-13 Score=152.57 Aligned_cols=220 Identities=15% Similarity=0.114 Sum_probs=149.3
Q ss_pred HHHHHHHHHHhcCCCCccee-eccchHHHHHHHHHHhhhhcCCCCEEEEcC-CCChhHHHHHH------HhhcCCCeEEE
Q 001989 213 LLNFQTMIADLTGLPMSNAS-LLDEGTAAAEAMAMCNNIQKGKKKTFIIAS-NCHPQTIDICI------TRADGFDIKVV 284 (985)
Q Consensus 213 i~e~q~~ia~L~g~~~~~~s-l~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~-~~H~s~~~~~~------~~a~~~gi~v~ 284 (985)
..++++.+++++|.+.+.+. ++.+||+++++++.++ . ++||+|++++ ..|+++...+. ..++..|++++
T Consensus 67 ~~~l~~~la~~~g~~~~~~~i~~~sGt~Ai~~al~al-~--~~Gd~Vl~~~~~~y~~~~~~~~l~g~~~~~~~~~G~~~~ 143 (431)
T 3ht4_A 67 RDTLEKVYADVFGAEAGLVRPQIISGTHAISTALFGI-L--RPGDELLYITGKPYDTLEEIVGVRGKGVGSFKEYNIGYN 143 (431)
T ss_dssp HHHHHHHHHHHTTCSEECCBTTSCSHHHHHHHHHHTT-C--CTTCEEEECSSSCCTTHHHHTTSSSCSSSCSGGGTCEEE
T ss_pred HHHHHHHHHHHhCCCcccccceeeCHHHHHHHHHHHh-C--CCCCEEEEeCCCCchhHHHHHhhcccccchHHHcCCEEE
Confidence 45677899999999875331 2457887777766554 2 3899999998 89998887763 22345799999
Q ss_pred EeCc--------hhhhc-cCCCEeEEEEEc----C-CCCeeeccHHHHHHHHHh--CCcEEEEEecCccccCC-CCCCcc
Q 001989 285 VSDL--------KDIDY-KSGDVCGVLVQY----P-GTEGEVLDYGDFIKNAHA--NGVKVVMATDLLALTIL-KPPGEL 347 (985)
Q Consensus 285 ~v~~--------~~l~~-l~~~t~~V~v~~----p-n~~G~v~di~~I~~~a~~--~galliV~a~~~~lg~l-~~~~~~ 347 (985)
.++. ++|++ ++++|++|++++ | +.+|.+.|+++|+++||+ +|++++|| +.++.+.. ..|.++
T Consensus 144 ~v~~~~~~~~d~e~l~~~l~~~tk~V~i~~sp~np~~~~~~~~~l~~i~~la~~~~~~~~livD-ea~~~~~~~~~~~~~ 222 (431)
T 3ht4_A 144 AVPLTEGGLVDFEAVAAAIHSNTKMIGIQRSKGYATRPSFTISQIKEMIAFVKEIKPDVVVFVD-NCYGEFIEEQEPCHV 222 (431)
T ss_dssp ECCBCTTSSBCHHHHHHHCCTTEEEEEEECSCTTSSSCCCCHHHHHHHHHHHHHHCTTCEEEEE-CTTCTTSSSCCGGGT
T ss_pred EeCCCCCCCcCHHHHHhhcCCCCeEEEEECCCCCCCCCcCCHHHHHHHHHHHHhhCCCCEEEEe-CCChhhccCCCcccc
Confidence 8865 35666 888999999986 4 567888999999999999 99999995 34454442 456788
Q ss_pred cceEEEecC-ccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHH
Q 001989 348 GADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQAL 426 (985)
Q Consensus 348 GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l 426 (985)
|+|++++|. |.|++. ++|..|++++++++++++..+... .+ + ....+.+.. ..
T Consensus 223 g~Di~~~S~sK~lgg~---~~~~GG~v~~~~~li~~l~~~~~~-----~~---~-----------g~~~~~~~~----~~ 276 (431)
T 3ht4_A 223 GADLMAGSLIKNPGGG---IVKTGGYIVGKEQYVEACAYRLTS-----PG---I-----------GAEAGASLY----SL 276 (431)
T ss_dssp TCSEEEEETTSGGGTT---TCSSCEEEEECHHHHHHHHHHHSC-----TT---T-----------TTSCSCCCS----CS
T ss_pred CCeEEEcCccccCCCC---CCCceEEEEecHHHHHHHHHHhcc-----CC---c-----------ccccCccHH----HH
Confidence 999999998 888642 223339999999887665211100 00 0 000111110 01
Q ss_pred HHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEc
Q 001989 427 LANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQ 470 (985)
Q Consensus 427 ~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~ 470 (985)
+.+..++ +.+..+.++..+++.++++.|+++| +++.
T Consensus 277 ~~~~~~l-------~~~~~~~~~~~~~a~~l~~~L~~~g-~~v~ 312 (431)
T 3ht4_A 277 QEMYQGF-------FLAPHVAGQALKGAIFTAAFLEKLG-MNTS 312 (431)
T ss_dssp HHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHT-CCEE
T ss_pred HHHHhHh-------hhHHHHHHHHHHHHHHHHHHHHhCc-CEec
Confidence 1111111 2345677888899999999999988 6653
|
| >2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens} SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A* 2can_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=5.2e-12 Score=147.15 Aligned_cols=274 Identities=14% Similarity=0.110 Sum_probs=169.2
Q ss_pred HHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhh-h--h-c--CCC-CEEEEcC-CCChhHHHHHHHhhc------C
Q 001989 213 LLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNN-I--Q-K--GKK-KTFIIAS-NCHPQTIDICITRAD------G 278 (985)
Q Consensus 213 i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~-~--~-~--~~g-~~Vlv~~-~~H~s~~~~~~~~a~------~ 278 (985)
..++++.+++++|.+ ++.+++||+.++++++.+.+ + + + .+| ++||+.+ ..|.++...+.. .. .
T Consensus 120 ~~~l~~~la~~~g~~--~v~~~~sGseA~~~al~~~~~~~~~~~g~~~g~~~vi~~~~~yhg~~~~~~~~-~g~~~~~~~ 196 (439)
T 2oat_A 120 LGEYEEYITKLFNYH--KVLPMNTGVEAGETACKLARKWGYTVKGIQKYKAKIVFAAGNFWGRTLSAISS-STDPTSYDG 196 (439)
T ss_dssp HHHHHHHHHHHHTCS--EEEEESSHHHHHHHHHHHHHHHHHHTTCCCTTCCEEEEETTCCCCSSHHHHTT-CCCHHHHTT
T ss_pred HHHHHHHHHHhcCCC--EEEEeCCHHHHHHHHHHHHHHHhhhccCCCCCCCeEEEEcCCCCCCCHhHhhc-CCChhcccC
Confidence 345667889999854 58888999988887775432 1 1 0 134 7888776 556666555431 11 0
Q ss_pred C---CeEEEEe---Cchhhhc-c-CCCEeEEEEEcC-CCCeeec----cHHHHHHHHHhCCcEEEEEecCc-cccCCCCC
Q 001989 279 F---DIKVVVS---DLKDIDY-K-SGDVCGVLVQYP-GTEGEVL----DYGDFIKNAHANGVKVVMATDLL-ALTILKPP 344 (985)
Q Consensus 279 ~---gi~v~~v---~~~~l~~-l-~~~t~~V~v~~p-n~~G~v~----di~~I~~~a~~~galliV~a~~~-~lg~l~~~ 344 (985)
+ ...+..+ |+++|++ + ++++++|++... +..|.+. ++++|.++|+++|+++++| +.+ .+|-....
T Consensus 197 ~~p~~~~v~~~~~~d~~~le~~l~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~gillI~D-Ev~~g~g~~g~~ 275 (439)
T 2oat_A 197 FGPFMPGFDIIPYNDLPALERALQDPNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIAD-EIQTGLARTGRW 275 (439)
T ss_dssp SCSCCTTEEEECSSCHHHHHHHTTSTTEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHTTCEEEEE-CTTTTTTTTSSS
T ss_pred CCCCCCCeEEeCCCCHHHHHHHhCCCCEEEEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEe-ccccCCccCCcc
Confidence 1 1334444 4467777 7 578888877543 4579776 8999999999999999995 333 23321111
Q ss_pred ---Ccc--cceEEEecCccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCC
Q 001989 345 ---GEL--GADIVVGSAQRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSN 419 (985)
Q Consensus 345 ---~~~--GaDi~v~s~k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsn 419 (985)
..+ ..|+++. +|+|++ |.-.+|++++++++.+.+... .. ..|.
T Consensus 276 ~~~~~~~~~~Di~t~-sK~l~~----G~~~~G~v~~~~~~~~~l~~~----------~~----------------~~t~- 323 (439)
T 2oat_A 276 LAVDYENVRPDIVLL-GKALSG----GLYPVSAVLCDDDIMLTIKPG----------EH----------------GSTY- 323 (439)
T ss_dssp SGGGGGTCCCSEEEE-CGGGGT----TSSCCEEEEECHHHHTTSCTT----------SS----------------CCSS-
T ss_pred hhHHHhCCCCcEEEe-cccccC----CCCCeEEEEECHHHHhccCCC----------Cc----------------ccCC-
Confidence 123 3687632 487752 201268899999887766321 00 0111
Q ss_pred ccchhH-HHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEc----CCCCcceEEEecC--C-HHHHHHH
Q 001989 420 ICTAQA-LLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQ----GLPFFDTVKVKCA--D-AHAIASA 491 (985)
Q Consensus 420 i~t~~~-l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~----~~~~~~~~~~~~~--~-~~~v~~~ 491 (985)
+.+.. ..+..++ +..+..+ ++.++..++.++++++|++++ +.++ +...+-.+.+... . +.++.+.
T Consensus 324 -~~~~~~~aaa~aa--l~~~~~~---~~~~~~~~~~~~l~~~L~~l~-~~~~~~~~~~g~~~~v~l~~~~~~~~~~l~~~ 396 (439)
T 2oat_A 324 -GGNPLGCRVAIAA--LEVLEEE---NLAENADKLGIILRNELMKLP-SDVVTAVRGKGLLNAIVIKETKDWDAWKVCLR 396 (439)
T ss_dssp -TTCHHHHHHHHHH--HHHHHHT---THHHHHHHHHHHHHHHHTTSC-TTTEEEEEEETTEEEEEECCCSSCCHHHHHHH
T ss_pred -CcCHHHHHHHHHH--HHHHhhh---hHHHHHHHHHHHHHHHHHHhc-CCCcEEEEeeeeEEEEEEecCccHHHHHHHHH
Confidence 11111 1122222 2333222 466778889999999999874 3321 1111212333222 2 7789999
Q ss_pred HHHcCceeeeecCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 492 AYKIEMNLRVVDSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 492 L~~~GI~~~~~~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
|.++||.+....++.+|++++..+|++|||+++++|.+
T Consensus 397 l~~~Gv~v~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~ 434 (439)
T 2oat_A 397 LRDNGLLAKPTHGDIIRFAPPLVIKEDELRESIEIINK 434 (439)
T ss_dssp HHHTTEECCBSSSSEEEECCCTTCCHHHHHHHHHHHHH
T ss_pred HHHCCeEEecCCCCEEEEECccCCCHHHHHHHHHHHHH
Confidence 99999998765568899999999999999999999874
|
| >2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, aminotransf mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=9.8e-12 Score=144.00 Aligned_cols=278 Identities=13% Similarity=0.042 Sum_probs=174.2
Q ss_pred hHHHHHHHHHHHHHHhcCCCC---------cceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcC
Q 001989 208 GRLESLLNFQTMIADLTGLPM---------SNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADG 278 (985)
Q Consensus 208 g~l~~i~e~q~~ia~L~g~~~---------~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~ 278 (985)
|..+...+..+.+++..|.+. .++.++.|++.+++.++.++. ++||+|+++.-.|+.+...++ .
T Consensus 79 G~~~lr~~ia~~l~~~~g~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~---~~gd~Vlv~~p~y~~~~~~~~----~ 151 (425)
T 2r2n_A 79 GIPELLSWLKQLQIKLHNPPTIHYPPSQGQMDLCVTSGSQQGLCKVFEMII---NPGDNVLLDEPAYSGTLQSLH----P 151 (425)
T ss_dssp CCHHHHHHHHHHHHHHHCCTTTTSCGGGTCEEEEEESSHHHHHHHHHHHHC---CTTCEEEEESSCCHHHHHHHG----G
T ss_pred CCHHHHHHHHHHHHHhcCCCCccccccCCcCcEEEeCcHHHHHHHHHHHhC---CCCCEEEEeCCCcHHHHHHHH----H
Confidence 333333344455556668764 478889999988877766552 378999999999999887764 4
Q ss_pred CCeEEEEeCc-------hhhhc-cC------------CCEeEEEE-EcC-CCCeeeccHH---HHHHHHHhCCcEEEEEe
Q 001989 279 FDIKVVVSDL-------KDIDY-KS------------GDVCGVLV-QYP-GTEGEVLDYG---DFIKNAHANGVKVVMAT 333 (985)
Q Consensus 279 ~gi~v~~v~~-------~~l~~-l~------------~~t~~V~v-~~p-n~~G~v~di~---~I~~~a~~~galliV~a 333 (985)
.|.+++.++. ++|++ +. +++++|++ .+| |.+|.+.+.+ +|+++|+++|+++++|
T Consensus 152 ~g~~~~~v~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~a~~~~~~li~D- 230 (425)
T 2r2n_A 152 LGCNIINVASDESGIVPDSLRDILSRWKPEDAKNPQKNTPKFLYTVPNGNNPTGNSLTSERKKEIYELARKYDFLIIED- 230 (425)
T ss_dssp GTCEEEEECEETTEECHHHHHHHHTTSCSTTSSSTTSCCCSEEEECCSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEE-
T ss_pred cCCEEEEeCcCCCCCCHHHHHHHHHhhhccccccccCCCceEEEECCCCcCCCCCcCCHHHHHHHHHHHHHcCCEEEEE-
Confidence 5888877754 45655 54 46888876 466 7899988654 9999999999999995
Q ss_pred cCccc----cCC-CCCC---cccceEEEecC-ccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeec
Q 001989 334 DLLAL----TIL-KPPG---ELGADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAM 404 (985)
Q Consensus 334 ~~~~l----g~l-~~~~---~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l 404 (985)
+..+. |.. .+.. ..+.+|+++|. |.|+ | |--+|++++++++++.+...
T Consensus 231 e~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~SK~~~-~----GlRiG~~~~~~~l~~~l~~~------------------ 287 (425)
T 2r2n_A 231 DPYYFLQFNKFRVPTFLSMDVDGRVIRADSFSKIIS-S----GLRIGFLTGPKPLIERVILH------------------ 287 (425)
T ss_dssp CTTGGGBSSSSCCCCTGGGCTTSCEEEEEESTTTTC-S----TTCCEEEEEEHHHHHHHHHH------------------
T ss_pred CCcccccCCCCCCCCccccCCCCCEEEEccchhhcc-C----ccceEEEecCHHHHHHHHHH------------------
Confidence 33331 111 1111 23556888887 7764 2 22369999998877654100
Q ss_pred ccccccccccccCCCccchh-HHHHHHHHHHHHHhCc----chHHHHHHHHHHHHHHHHHHHhcC-CCe-EEcCCCCcce
Q 001989 405 QTREQHIRRDKATSNICTAQ-ALLANMAAMYAVYHGP----EGLKTIAQRVHGLAGTFALGLKKL-GTV-EVQGLPFFDT 477 (985)
Q Consensus 405 ~tre~~irre~atsni~t~~-~l~a~~aa~~l~~~g~----~Gl~~i~~~~~~~a~~l~~~L~~~-g~~-~~~~~~~~~~ 477 (985)
+. . ...+.+. ...++.+ ++...+. +-++++.++..++.+++.+.|++. +++ .+..+....-
T Consensus 288 --------~~-~-~~~~~~~~~q~a~~~--~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~p~~g~~ 355 (425)
T 2r2n_A 288 --------IQ-V-STLHPSTFNQLMISQ--LLHEWGEEGFMAHVDRVIDFYSNQKDAILAAADKWLTGLAEWHVPAAGMF 355 (425)
T ss_dssp --------HH-T-TTCSSCHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSEEECCCSBSSE
T ss_pred --------HH-H-hcCCCCHHHHHHHHH--HHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCeEEeCCCceEE
Confidence 00 0 0111111 1112222 2232221 235667777788889999999874 335 3332211112
Q ss_pred EEEecCC---HHH-HHHHHHHcCceeeee---------cCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 478 VKVKCAD---AHA-IASAAYKIEMNLRVV---------DSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 478 ~~~~~~~---~~~-v~~~L~~~GI~~~~~---------~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
+.+++++ ..+ +.+.|.++||.+... ..+.+|++++. .++++|+++++.|..
T Consensus 356 ~~~~~~~~~~~~~~~~~~l~~~gv~v~pg~~f~~~~~~~~~~iRis~~~-~~~~~i~~~~~~l~~ 419 (425)
T 2r2n_A 356 LWIKVKGINDVKELIEEKAVKMGVLMLPGNAFYVDSSAPSPYLRASFSS-ASPEQMDVAFQVLAQ 419 (425)
T ss_dssp EEEEETTCSCCHHHHHTHHHHTTEECEEGGGGSSSTTSCCCEEEEECSS-CCHHHHHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHHHCCcEEechhhhcCCCCCCCCEEEEEeCC-CCHHHHHHHHHHHHH
Confidence 3344442 445 688888999987532 13689999984 599999999999874
|
| >2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal 5'-phosphate, arginine metabolism, lysine biosynthesis, gabaculine; HET: PLP; 1.91A {Salmonella typhimurium} PDB: 2pb0_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=7.5e-12 Score=144.84 Aligned_cols=276 Identities=14% Similarity=0.076 Sum_probs=170.1
Q ss_pred HHHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhh-h--c-CCC-CEEEEcC-CCChhHHHHHHHhhc-------
Q 001989 211 ESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNI-Q--K-GKK-KTFIIAS-NCHPQTIDICITRAD------- 277 (985)
Q Consensus 211 ~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~-~--~-~~g-~~Vlv~~-~~H~s~~~~~~~~a~------- 277 (985)
+...++++.+++++|.+ ++.+++|||.++++++.+.+. . + .+| ++||+.+ ..|......+.....
T Consensus 99 ~~~~~l~~~la~~~g~~--~v~~~~ggteA~~~al~~~~~~~~~~~~~g~~~vi~~~~~yh~~~~~~~~~~g~~~~~~~~ 176 (420)
T 2pb2_A 99 EPALRLGRKLIDATFAE--RVLFMNSGTEANETAFKLARHYACVRHSPFKTKIIAFHNAFHGRSLFTVSVGGQPKYSDGF 176 (420)
T ss_dssp HHHHHHHHHHHHHSSCS--EEEEESSHHHHHHHHHHHHHHHHHHHTCTTCCEEEEETTCCCCSSHHHHHHSSCHHHHTTS
T ss_pred HHHHHHHHHHHhhCCCC--eEEEeCCHHHHHHHHHHHHHHHhhhccCCCCCEEEEEeCCcCCcCHHHHHhcCCccccccC
Confidence 34456778999999854 588899999888887754331 0 0 123 5888776 455555444432100
Q ss_pred -CCCeEEEEe---Cchhhhc-cCCCEeEEEEEcC-CCCee----eccHHHHHHHHHhCCcEEEEEecCc-cccCCCCCC-
Q 001989 278 -GFDIKVVVS---DLKDIDY-KSGDVCGVLVQYP-GTEGE----VLDYGDFIKNAHANGVKVVMATDLL-ALTILKPPG- 345 (985)
Q Consensus 278 -~~gi~v~~v---~~~~l~~-l~~~t~~V~v~~p-n~~G~----v~di~~I~~~a~~~galliV~a~~~-~lg~l~~~~- 345 (985)
.....+..+ |+++|++ +++++++|++..+ |..|. .+++++|.++|+++|+++++|. .. .++....+.
T Consensus 177 ~p~~~~~~~~~~~d~~~le~~i~~~~~~vi~~p~~~~gG~~~~~~~~l~~l~~l~~~~gi~lI~De-v~~g~~~~g~~~~ 255 (420)
T 2pb2_A 177 GPKPADIIHVPFNDLHAVKAVMDDHTCAVVVEPIQGEGGVQAATPEFLKGLRDLCDEHQALLVFDE-VQCGMGRTGDLFA 255 (420)
T ss_dssp SSCCSCEEEECTTCHHHHHHHCCTTEEEEEECSEETTTTSEECCHHHHHHHHHHHHHTTCEEEEEC-TTTTTTTTSSSSH
T ss_pred CCCCCCeEEecCCCHHHHHHHhccCceEEEEeCCcCCCCeecCCHHHHHHHHHHHHHcCCEEEEEc-CCcCcccCCcHHH
Confidence 011124444 4567777 8889999988765 45665 3589999999999999999953 33 233211111
Q ss_pred ----cccceEEEecCccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCcc
Q 001989 346 ----ELGADIVVGSAQRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNIC 421 (985)
Q Consensus 346 ----~~GaDi~v~s~k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~ 421 (985)
....|+++. +|.|++ |-.+|++++++++.+.+... ..+ .| .+
T Consensus 256 ~~~~~~~~diit~-sK~l~~-----G~~iG~~~~~~~l~~~l~~~----------~~~----------------~t--~~ 301 (420)
T 2pb2_A 256 YMHYGVTPDILTS-AKALGG-----GFPVSAMLTTQEIASAFHVG----------SHG----------------ST--YG 301 (420)
T ss_dssp HHHHTCCCSEEEE-CGGGGT-----TSCCEEEEECHHHHTTCC--------------C----------------CE--EC
T ss_pred HHhcCCCCCeEEe-cccccC-----CCceEEEEEhHHHHHhhcCC----------CcC----------------cc--cC
Confidence 134788754 488852 22368888898877765310 000 01 11
Q ss_pred chhH-HHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcC--C--CeEEcCCCCcceEEEecC-----CHHHHHHH
Q 001989 422 TAQA-LLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKL--G--TVEVQGLPFFDTVKVKCA-----DAHAIASA 491 (985)
Q Consensus 422 t~~~-l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~--g--~~~~~~~~~~~~~~~~~~-----~~~~v~~~ 491 (985)
.+.. ..+..++ +..+.. +++.++..++.+++++.|+++ + .+.... +...-+.+.++ ...++.+.
T Consensus 302 ~~~~~~aa~~a~--L~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~-~~g~~~~v~~~~~~~~~~~~l~~~ 375 (420)
T 2pb2_A 302 GNPLACAVAGAA--FDIINT---PEVLQGIHTKRQQFVQHLQAIDEQFDIFSDIR-GMGLLIGAELKPKYKGRARDFLYA 375 (420)
T ss_dssp CCHHHHHHHHHH--HHHHSS---HHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEE-EETTEEEEEECGGGTTCHHHHHHH
T ss_pred cCHHHHHHHHHH--HHHHHh---ccHHHHHHHHHHHHHHHHHHHHhcCCCeEEEE-ecceEEEEEECCCchHHHHHHHHH
Confidence 1111 1122222 344443 456777888889999988775 2 122111 11112333332 26789999
Q ss_pred HHHcCceeeeecCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 492 AYKIEMNLRVVDSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 492 L~~~GI~~~~~~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
|.++||.+....++.+|++++...|++|+|+++++|.+
T Consensus 376 l~~~Gi~v~~~~~~~iRl~~~~~~t~eei~~~~~~l~~ 413 (420)
T 2pb2_A 376 GAEAGVMVLNAGADVMRFAPSLVVEEADIHEGMQRFAQ 413 (420)
T ss_dssp HHHTTEECEESSTTEEEECCCTTCCHHHHHHHHHHHHH
T ss_pred HHHCCCEEEeCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 99999988765568899999999999999999999974
|
| >3lws_A Aromatic amino acid beta-eliminating lyase/threonine aldolase; structural genomics, joint center for structural genomics, JCSG; HET: LLP MSE; 2.00A {Exiguobacterium sibiricum} | Back alignment and structure |
|---|
Probab=99.44 E-value=3.9e-12 Score=143.31 Aligned_cols=304 Identities=13% Similarity=0.114 Sum_probs=178.1
Q ss_pred ceecCCCCCCCCCcHHHHHHHHhCC---ccccccCCChhhHhhhHHHHHHHHHHHHHHhcCCCCcceeeccchHHHHHHH
Q 001989 168 KSFIGMGYYNTHVPPVILRNIMENP---AWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAM 244 (985)
Q Consensus 168 ~~~lG~g~y~~~~p~~v~~~i~~~~---~~~t~~~pyq~e~sqg~l~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~ 244 (985)
++|+|.|..|. ++.++. +.+..- ..-..|++ . ....++++.+|+++|.+. ..++.+||.+.+.+
T Consensus 12 ~~~l~~~~~p~-~~~~~~-~~~~~~~~~~~~~~y~~-~--------~~~~~l~~~la~~~~~~~--~i~~~~G~~a~~~a 78 (357)
T 3lws_A 12 TTGQISGHGKR-NVGVLK-TAFAAVADEMASDQYGT-G--------AIIEPFEQKFADVLGMDD--AVFFPSGTMAQQVA 78 (357)
T ss_dssp CSEESSBSSCC-BHHHHH-HHHTTSCTTCBCEETTE-E--------TTHHHHHHHHHHHHTCSE--EEEESCHHHHHHHH
T ss_pred hcccccCCCCC-CHHHHH-HHHHHhhcccCcccccC-C--------hHHHHHHHHHHHHhCCCc--EEEecCcHHHHHHH
Confidence 46889997664 334443 444431 11112221 1 123467789999999865 45568888776655
Q ss_pred HHHhhhhcCCCC--EEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc-------hhhhccCCCEeEEEEEcC-CCC-eeec
Q 001989 245 AMCNNIQKGKKK--TFIIASNCHPQTIDICITRADGFDIKVVVSDL-------KDIDYKSGDVCGVLVQYP-GTE-GEVL 313 (985)
Q Consensus 245 ~~a~~~~~~~g~--~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~-------~~l~~l~~~t~~V~v~~p-n~~-G~v~ 313 (985)
+.++. . ++| .|+++...|++....... +...|++++.++. ++|++. .++++|++.+| |++ |.+.
T Consensus 79 l~~~~-~--~gd~~~vi~~~~~~~~~~~~~~~-~~~~g~~~~~v~~~~~~~d~~~l~~~-~~~~~v~~~~p~np~~G~~~ 153 (357)
T 3lws_A 79 LRIWS-D--ETDNRTVAYHPLCHLEIHEQDGL-KELHPIETILVGAADRLMTLDEIKAL-PDIACLLLELPQREIGGVAP 153 (357)
T ss_dssp HHHHH-H--HHTCCEEEECTTCHHHHSSTTHH-HHHSSCEEEECSCTTSCCCHHHHHTC-CSCSEEEEESSBGGGTSBCC
T ss_pred HHHHh-h--cCCCcEEEecccceeeeeccchh-hhccCcEEEEecCCCCCcCHHHHhcC-cCcceEEEEcccccCCceeC
Confidence 55442 2 445 788888888776542100 1124888887754 345443 24899999999 455 8876
Q ss_pred ---cHHHHHHHHHhCCcEEEEEecCcc---ccCCC-CCC--cccceEEEecC-ccccccCCCCCCcEEEEEEchhhHhcC
Q 001989 314 ---DYGDFIKNAHANGVKVVMATDLLA---LTILK-PPG--ELGADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMM 383 (985)
Q Consensus 314 ---di~~I~~~a~~~galliV~a~~~~---lg~l~-~~~--~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~l 383 (985)
++++|+++|+++|+++++|. ... .+... +.. ..++|+++.+. |.|++| ..|+++.++++++.+
T Consensus 154 ~~~~l~~i~~~~~~~~~~li~D~-a~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~~~~~------~gg~~~~~~~~~~~~ 226 (357)
T 3lws_A 154 AFSELETISRYCRERGIRLHLDG-ARLFEMLPYYEKTAAEIAGLFDSIYISFYKGLGGI------AGAILAGPAAFCQTA 226 (357)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEEE-TTHHHHHHHHTCCHHHHHTTSSEEEEESSSTTCCS------SCEEEEECHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCEEEEEC-chhhhhhhhcCCChHHHHhcCCEEEEeccccCCCC------ceEEEEcCHHHHHHH
Confidence 59999999999999999953 222 11111 111 14589988887 877543 338898888877654
Q ss_pred CCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhc
Q 001989 384 PGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKK 463 (985)
Q Consensus 384 p~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~ 463 (985)
.. + +...+ .+..+.... +..+...+... .+..++..++++++.+.|++
T Consensus 227 ~~--------------~-----------~~~~~-~~~~~~~~~-~~~~~~~l~~~-----~~~~~~~~~~~~~l~~~L~~ 274 (357)
T 3lws_A 227 RI--------------W-----------KRRYG-GDLISLYPY-IVSADYYYELR-----KDRMGQYYEQAKQLAEQFNA 274 (357)
T ss_dssp HH--------------H-----------HHHTT-CCCSCCHHH-HHHHHHHHHHH-----TTCHHHHHHHHHHHHHHHHT
T ss_pred HH--------------H-----------HHHhc-CCcccchHH-HHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHh
Confidence 10 0 00000 011111111 11111111211 11223346778899999999
Q ss_pred CCCeEEc-CCCCcceEEEecCC-----HHHHHHHHHHcCceeeee---cCC--eEEEEeccC---CCHHHHHHHHHHHh
Q 001989 464 LGTVEVQ-GLPFFDTVKVKCAD-----AHAIASAAYKIEMNLRVV---DSN--TVTASFDET---TTLEDVDKLFIVFA 528 (985)
Q Consensus 464 ~g~~~~~-~~~~~~~~~~~~~~-----~~~v~~~L~~~GI~~~~~---~~~--~lris~t~~---~t~edId~li~aL~ 528 (985)
++++++. .++..+-+.++++. ..++.+.|.++||.+... .++ .+|++++.. .+++++++.++.|.
T Consensus 275 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~g~~~~~~~~~~r~~i~~~~~~~~~~~l~~al~~l~ 353 (357)
T 3lws_A 275 LPGVHTTPEVPVSNMFHLHFDGQAADISPKLEQVQEETGLGFVGYLVDKDGYCSTEISVGDAYGELDQQTRDAGFARLR 353 (357)
T ss_dssp STTEEEESSSCSSSEEEEEEESCHHHHHHHHHHHHHHHCEESCSCCEECSSEEEEEEEBCTTGGGSCHHHHHHHHHHHH
T ss_pred CCCCeeccCCCcceEEEEEecCChHHHHHHHHHHHHhcCeEEecccccCCCceEEEEEecchhhhcCHHHHHHHHHHHH
Confidence 8449884 33333334444432 567889999999987542 133 789998754 57888888877775
|
| >1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold type I, subclass II, homodimer; HET: LLP; 1.71A {Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A* 1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A* 1dty_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=1.2e-11 Score=143.30 Aligned_cols=279 Identities=13% Similarity=0.088 Sum_probs=172.0
Q ss_pred HHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhh-hhc---CCCCEEEEcC-CCChhHHHHHHHhhc-----------
Q 001989 214 LNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNN-IQK---GKKKTFIIAS-NCHPQTIDICITRAD----------- 277 (985)
Q Consensus 214 ~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~-~~~---~~g~~Vlv~~-~~H~s~~~~~~~~a~----------- 277 (985)
.++.+.+++++|.+..++.+++|||.+++.++.+.+ +.. .+|++||+.+ ..|+.....+.. ..
T Consensus 89 ~~l~~~la~~~~~~~~~v~~~~ggtea~~~ai~~~~~~~~~~g~~~~~vi~~~~~yh~~~~~~~~~-~~~~~~~~~~~~~ 167 (429)
T 1s0a_A 89 IELCRKLVAMTPQPLECVFLADSGSVAVEVAMKMALQYWQAKGEARQRFLTFRNGYHGDTFGAMSV-CDPDNSMHSLWKG 167 (429)
T ss_dssp HHHHHHHHHHSCTTCCEEEEESSHHHHHHHHHHHHHHHHHHHTCCCCEEEEETTCCCCSSHHHHTT-SCTTTTTGGGGTT
T ss_pred HHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHHHhcccCCCCCeEEEECCCCCCCchhhhhh-cCCchhhcccccC
Confidence 456678999998877889999999988887765332 221 1478998888 566655444321 00
Q ss_pred -CCCeEEEEe------------Cchhhhc-cC---CCEeEEEEEcC--CCCeeecc----HHHHHHHHHhCCcEEEEEec
Q 001989 278 -GFDIKVVVS------------DLKDIDY-KS---GDVCGVLVQYP--GTEGEVLD----YGDFIKNAHANGVKVVMATD 334 (985)
Q Consensus 278 -~~gi~v~~v------------~~~~l~~-l~---~~t~~V~v~~p--n~~G~v~d----i~~I~~~a~~~galliV~a~ 334 (985)
..++..+.+ |+++|++ ++ +++++|++..+ |.+|.+.+ +++|.++|+++|+++++| +
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~vi~~p~~~n~tG~~~~~~~~l~~i~~l~~~~~~~li~D-e 246 (429)
T 1s0a_A 168 YLPENLFAPAPQSRMDGEWDERDMVGFARLMAAHRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIAD-E 246 (429)
T ss_dssp TSCCCEEECCCCSBC-CCCCGGGGHHHHHHHHHHTTTEEEEEECSSEECTTTCEEBCTHHHHHHHHHHHHHTCEEEEE-C
T ss_pred CCCCceEeCCCcccccccchHHHHHHHHHHHHhCCCCEEEEEEeecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEe-e
Confidence 013343332 3345655 54 57777776554 56998776 999999999999999995 3
Q ss_pred Ccc-ccCCCCC---C--cccceEEEecCccccccCCCCC-CcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccc
Q 001989 335 LLA-LTILKPP---G--ELGADIVVGSAQRFGVPMGYGG-PHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTR 407 (985)
Q Consensus 335 ~~~-lg~l~~~---~--~~GaDi~v~s~k~lg~P~~~GG-P~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tr 407 (985)
.++ +|..... . ....|+++.| |+|++ | -.+|++++++++++.+... +...+
T Consensus 247 ~~~~~g~~g~~~~~~~~~~~~d~~t~s-K~l~~-----G~~~iG~~~~~~~~~~~l~~~---------~~~~~------- 304 (429)
T 1s0a_A 247 IATGFGRTGKLFACEHAEIAPDILCLG-KALTG-----GTMTLSATLTTREVAETISNG---------EAGCF------- 304 (429)
T ss_dssp TTTTTTTTSSSSGGGGGTCCCSEEEEC-GGGGT-----SSSCCEEEEECHHHHHHHHTS---------TTSSC-------
T ss_pred hhhCCcccchHHHhhhcCCCCCEEEec-ccccC-----CCccceEEEeCHHHHHHhhcC---------CCccc-------
Confidence 333 4322111 1 2356877544 87752 3 3478999998887665210 00000
Q ss_pred cccccccccCCCccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCC---CeEEcCCCCcceEEEecC-
Q 001989 408 EQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLG---TVEVQGLPFFDTVKVKCA- 483 (985)
Q Consensus 408 e~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g---~~~~~~~~~~~~~~~~~~- 483 (985)
...+|.+.. +.+..+..+++ ..+..+ ++.++..++.++++++|++++ ++..+.. ...-+.+.++
T Consensus 305 -----~~~~t~~~n-~~~~~a~~aal--~~~~~~---~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~-~g~~~~~~~~~ 372 (429)
T 1s0a_A 305 -----MHGPTFMGN-PLACAAANASL--AILESG---DWQQQVADIEVQLREQLAPARDAEMVADVRV-LGAIGVVETTH 372 (429)
T ss_dssp -----SCCCTTTTC-HHHHHHHHHHH--HHHHTC---HHHHHHHHHHHHHHHHHGGGGGCTTEEEEEE-ETTEEEEEESS
T ss_pred -----ccCCCCCCC-HHHHHHHHHHH--HHHHhC---CHHHHHHHHHHHHHHHHHHHhcCCCEEEEEE-eeEEEEEEECC
Confidence 011222211 12222222332 333222 456777888999999998752 2432211 1112334444
Q ss_pred --CHHHHHHHHHHcCceeeeecCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 484 --DAHAIASAAYKIEMNLRVVDSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 484 --~~~~v~~~L~~~GI~~~~~~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
++.++.+.|.++||.++.. .+.+|++++..+|++|+|+++++|++
T Consensus 373 ~~~~~~l~~~l~~~Gi~v~~~-~~~iRis~~~~~t~e~i~~~~~~l~~ 419 (429)
T 1s0a_A 373 PVNMAALQKFFVEQGVWIRPF-GKLIYLMPPYIILPQQLQRLTAAVNR 419 (429)
T ss_dssp CBCHHHHHHHHHHTTEECCCB-TTEEEECCCTTCCHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHCCCEEecc-CCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 2778999999999988763 47899999999999999999999974
|
| >2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme, pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A 2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=8e-12 Score=145.95 Aligned_cols=272 Identities=13% Similarity=0.030 Sum_probs=166.4
Q ss_pred HHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCC-hhHHHHHHHhhcCCCeEEEEeCc---
Q 001989 213 LLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCH-PQTIDICITRADGFDIKVVVSDL--- 288 (985)
Q Consensus 213 i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H-~s~~~~~~~~a~~~gi~v~~v~~--- 288 (985)
..++++.+|+++|.+ ++.++.|||.+++.++.++ . ++|| +++...| +++...++. .|.+++.++.
T Consensus 77 ~~~l~~~la~~~~~~--~~~~~~~gt~a~~~al~~l-~--~~gd--i~~~~~~~~~~~~~~~~----~G~~~~~v~~~~~ 145 (456)
T 2ez2_A 77 FYHLERTVQELFGFK--HIVPTHQGRGAENLLSQLA-I--KPGQ--YVAGNMYFTTTRYHQEK----NGAVFVDIVRDEA 145 (456)
T ss_dssp HHHHHHHHHHHHCCS--EEEEESSHHHHHHHHHHHH-C--CTTC--EEEESSCCHHHHHHHHH----TTCEEEECBCGGG
T ss_pred HHHHHHHHHHHhCCC--cEEEeCCcHHHHHHHHHHh-C--CCCC--EeccccccchhHHHHHH----cCCEEEEeccccc
Confidence 456788999999976 5888899998877776654 2 3788 5666666 887777643 5777777643
Q ss_pred ---------------hhhhc-cCCCE----eEEEEEcC-C-CCeeecc---HHHHHHHHHhCCcEEEEEecCcccc----
Q 001989 289 ---------------KDIDY-KSGDV----CGVLVQYP-G-TEGEVLD---YGDFIKNAHANGVKVVMATDLLALT---- 339 (985)
Q Consensus 289 ---------------~~l~~-l~~~t----~~V~v~~p-n-~~G~v~d---i~~I~~~a~~~galliV~a~~~~lg---- 339 (985)
++|++ +++++ ++|++++| | .+|.+.| +++|+++|+++|+++++| +.++.|
T Consensus 146 ~~~~~~~~~~~~~d~~~l~~~i~~~t~~~~~~v~l~~p~n~ptG~~~~~~~l~~i~~la~~~~i~li~D-e~~~~g~~~~ 224 (456)
T 2ez2_A 146 HDAGLNIAFKGDIDLKKLQKLIDEKGAENIAYICLAVTVNLAGGQPVSMANMRAVRELTEAHGIKVFYD-ATRCVENAYF 224 (456)
T ss_dssp GCTTCCCSCTTCBCHHHHHHHHHHHCGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHTTCCEEEE-CTTHHHHHHH
T ss_pred ccccccccccCCCCHHHHHHHHHhccccceeEEEEeccCCCCCCccCCHHHHHHHHHHHHHcCCeEEEE-cccccccccc
Confidence 23444 54444 88889888 5 7998876 999999999999999995 344443
Q ss_pred -----C-C-CCCC-------cccceEEEecCccccccCCCCCCcEEEEEE-chhhHhcCCCceeeeeecCCCCcceeeec
Q 001989 340 -----I-L-KPPG-------ELGADIVVGSAQRFGVPMGYGGPHAAFLAT-SQEYKRMMPGRIVGVSIDSSGKPALRVAM 404 (985)
Q Consensus 340 -----~-l-~~~~-------~~GaDi~v~s~k~lg~P~~~GGP~~G~l~~-~~~~~~~lp~~~vG~t~d~~g~~~~~l~l 404 (985)
. . ..+- ....|+++.|+|+++++ |.+|++++ ++++.+.+...... . .+ +
T Consensus 225 ~~~~~~~~~g~~~~~~~~~~~~~~d~~~~S~kk~~~~-----~~gG~~~~~~~~~~~~~~~~~~~---~-~~---~---- 288 (456)
T 2ez2_A 225 IKEQEQGFENKSIAEIVHEMFSYADGCTMSGKKDCLV-----NIGGFLCMNDDEMFSSAKELVVV---Y-EG---M---- 288 (456)
T ss_dssp HHHHSTTCTTSCHHHHHHHHHTTCSEEEEETTTTTCC-----SSCEEEEESCHHHHHHHHHHHHH---H-TC---C----
T ss_pred ccccccccCCcchhhhhhhhcccCCEEEEeCcccCCC-----CceeEEEECCHHHHHHHHHHHhh---c-cC---c----
Confidence 1 1 1110 12369988877776431 23588888 56666544100000 0 00 0
Q ss_pred ccccccccccccCCCccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCCCcceEEEec--
Q 001989 405 QTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDTVKVKC-- 482 (985)
Q Consensus 405 ~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~~~~~~~~~~-- 482 (985)
...+..| + ..+.+++.+ .+..+. ++..++..++++++.+.|++.| +++..+....-+.+..
T Consensus 289 --------~~~~~~~--~-~~~~a~a~~-~~~~~~----~~~~~~~~~~~~~l~~~L~~~g-~~~~~p~~~~~~~~~~~~ 351 (456)
T 2ez2_A 289 --------PSYGGLA--G-RDMEAMAIG-LREAMQ----YEYIEHRVKQVRYLGDKLKAAG-VPIVEPVGGHAVFLDARR 351 (456)
T ss_dssp --------TTTTTCC--H-HHHHHHHHH-HHHHTC----HHHHHHHHHHHHHHHHHHHHTT-CCBCSSCCSSEEEEEHHH
T ss_pred --------ccccCcc--h-hHHHHHHHH-HHHHhH----HHHHHHHHHHHHHHHHHHhcCC-CccccCCCceEEEEEhHH
Confidence 0000011 1 122121111 112221 4566777788899999999876 7665322222233332
Q ss_pred --CC--HHHH-----HHHH-HHcCceeee---e--------------cCCeEEEEeccC-CCHHHHHHHHHHHhC
Q 001989 483 --AD--AHAI-----ASAA-YKIEMNLRV---V--------------DSNTVTASFDET-TTLEDVDKLFIVFAG 529 (985)
Q Consensus 483 --~~--~~~v-----~~~L-~~~GI~~~~---~--------------~~~~lris~t~~-~t~edId~li~aL~~ 529 (985)
++ ..++ .++| .++||.+.. . ..+.+|+|++.. +|++||++++++|.+
T Consensus 352 ~~~~~~~~~~~~~~l~~~L~~~~gv~~~~~g~~~~~~~~~~g~~~~~~~~~iRis~~~~~~t~e~i~~~~~~l~~ 426 (456)
T 2ez2_A 352 FCEHLTQDEFPAQSLAASIYVETGVRSMERGIISAGRNNVTGEHHRPKLETVRLTIPRRVYTYAHMDVVADGIIK 426 (456)
T ss_dssp HTTTSCGGGCHHHHHHHHHHHHHSEECEEESHHHHCBCTTTCSBCCCSCCEEEEECCTTTCCHHHHHHHHHHHHH
T ss_pred hcCCCChhhccHHHHHHHHHHhcCeeeecccccccccCccccccccCCCCeEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 22 3344 6677 577986421 0 026899999987 899999999999974
|
| >3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4} | Back alignment and structure |
|---|
Probab=99.43 E-value=5.1e-12 Score=146.99 Aligned_cols=276 Identities=9% Similarity=0.029 Sum_probs=165.7
Q ss_pred HHHHHHHHHhc------CCCCcceeeccchHHHHHHHHHHhhhhcCCCC--------------EEEEc-CCCChhHHHHH
Q 001989 214 LNFQTMIADLT------GLPMSNASLLDEGTAAAEAMAMCNNIQKGKKK--------------TFIIA-SNCHPQTIDIC 272 (985)
Q Consensus 214 ~e~q~~ia~L~------g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~--------------~Vlv~-~~~H~s~~~~~ 272 (985)
.++++.+|+++ +.++.++.+++|+|.+++.++.++. . +|| +||++ ...|+.+...+
T Consensus 86 ~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~t~al~~~~~~l~-~--~gd~~~~~~~~~~g~~~~vi~~~~p~~~~~~~~~ 162 (444)
T 3if2_A 86 SAFIDALVGFFNRHYDWNLTSENIALTNGSQNAFFYLFNLFG-G--AFVNEHSQDKESKSVDKSILLPLTPEYIGYSDVH 162 (444)
T ss_dssp HHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHHHHHHHSS-E--EEECC-------CEEEEEEEESSSSCCGGGTTCC
T ss_pred HHHHHHHHHHHHhhcCCCCCHHHEEEecCcHHHHHHHHHHHh-C--CCccccccccccccccceEEEeCCCCccchhhcc
Confidence 35667777776 5677899999999988877766542 2 555 78886 66777766542
Q ss_pred HH--hhcCCCeEEEEeC-------------chhhhc----cCCCEeEEEEEcC-CCCeeecc---HHHHHHHHHhCCcEE
Q 001989 273 IT--RADGFDIKVVVSD-------------LKDIDY----KSGDVCGVLVQYP-GTEGEVLD---YGDFIKNAHANGVKV 329 (985)
Q Consensus 273 ~~--~a~~~gi~v~~v~-------------~~~l~~----l~~~t~~V~v~~p-n~~G~v~d---i~~I~~~a~~~gall 329 (985)
.. .....|..++.++ +++|++ +++++++|++++| |.+|.+.| +++|+++|+++|+++
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~~l~~~l~~~~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~a~~~~~~l 242 (444)
T 3if2_A 163 VEGQHFAAVLPHIDEVTHDGEEGFFKYRVDFEALENLPALKEGRIGAICCSRPTNPTGNVLTDEEMAHLAEIAKRYDIPL 242 (444)
T ss_dssp SSSCCEEECCCEEEEEEETTEEEEEEEECCHHHHHTCHHHHTTCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCCE
T ss_pred cccchhhccCceEEecccccccCccccCCCHHHHHHHHHhcCCCceEEEeCCCCCCCCCcCCHHHHHHHHHHHHHCCCEE
Confidence 10 1234566665443 345554 3678999999988 78999988 899999999999999
Q ss_pred EEEecCccc-----cCC-CCCCcccceEEEecCccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeee
Q 001989 330 VMATDLLAL-----TIL-KPPGELGADIVVGSAQRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVA 403 (985)
Q Consensus 330 iV~a~~~~l-----g~l-~~~~~~GaDi~v~s~k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~ 403 (985)
++|. ..+. ... ..+...+.+++++|..+++.| |-.+|++.+++++.+.+... .+.+
T Consensus 243 i~De-~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~~----G~r~G~~~~~~~l~~~~~~~----------~~~~--- 304 (444)
T 3if2_A 243 IIDN-AYGMPFPNIIYSDAHLNWDNNTILCFSLSKIGLP----GMRTGIIVADAKVIEAVSAM----------NAVV--- 304 (444)
T ss_dssp EEEC-TTCTTTTCCBCSCCCCCCCTTEEEEEESTTTTCG----GGCCEEEECCHHHHHHHHHH----------HHHH---
T ss_pred EEEC-CCCCcccccccccccccCCCCEEEEechhhccCC----CCceEEEEECHHHHHHHHHH----------HHhc---
Confidence 9953 3331 111 112346788999998334432 34578998888877655110 0000
Q ss_pred cccccccccccccCCCccchhHHHHHHHHHHHHHhC-cchHHH-HHHHHHHHHHHHHHHHhc----CCCeEEcCCCCcce
Q 001989 404 MQTREQHIRRDKATSNICTAQALLANMAAMYAVYHG-PEGLKT-IAQRVHGLAGTFALGLKK----LGTVEVQGLPFFDT 477 (985)
Q Consensus 404 l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g-~~Gl~~-i~~~~~~~a~~l~~~L~~----~g~~~~~~~~~~~~ 477 (985)
..+.+. ....+..+.+ .... .+-+++ +.++..++.+++.+.|.+ ++ +++..+....-
T Consensus 305 -----------~~~~~~---~~~~a~~~~l--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~~~~~~~g~~ 367 (444)
T 3if2_A 305 -----------NLAPTR---FGAAIATPLV--ANDRIKQLSDNEIKPFYQKQATLAVKLLKQALGDYP-LMIHKPEGAIF 367 (444)
T ss_dssp -----------HSSCCC---HHHHHHHHHH--HTSHHHHHHHHTHHHHHHHHHHHHHHHHHHHSSSSS-EEEECCCBSSE
T ss_pred -----------cCCCCh---HHHHHHHHHH--HcCchhHHHHHHHHHHHHHHHHHHHHHHHHhcccCC-ceEecCCccEE
Confidence 000111 1121221111 1100 001111 333444455555555543 34 66653221112
Q ss_pred EEEecC--C--HHHHHHHHHHcCceeeeec--------------CCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 478 VKVKCA--D--AHAIASAAYKIEMNLRVVD--------------SNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 478 ~~~~~~--~--~~~v~~~L~~~GI~~~~~~--------------~~~lris~t~~~t~edId~li~aL~~ 529 (985)
+.+.++ + ..++.+.|.++||.+.... .+.+|++++. |++||+++++.|.+
T Consensus 368 ~~~~~~~~~~~~~~l~~~l~~~gi~v~~g~~~~~~~~~~~~~~~~~~iRis~~~--~~e~i~~~l~~l~~ 435 (444)
T 3if2_A 368 LWLWFKDLPISTLDLYERLKAKGTLIVPSEYFFPGVDVSDYQHAHECIRMSIAA--DEQTLIDGIKVIGE 435 (444)
T ss_dssp EEEEETTCSSCHHHHHHHHHHTTEECEEGGGSCTTCCCTTCSGGGSEEEEESSS--CHHHHHHHHHHHHH
T ss_pred EEEEcCCCCCCHHHHHHHHHHCCeEEecchhhcCCCCCcccccCCCeEEEEEeC--CHHHHHHHHHHHHH
Confidence 333333 2 7889999999999875421 1579999997 99999999999874
|
| >7aat_A Aspartate aminotransferase; transferase(aminotransferase); HET: PLP; 1.90A {Gallus gallus} SCOP: c.67.1.1 PDB: 1ivr_A* 1map_A* 1maq_A* 1oxo_A* 1oxp_A* 1ama_A* 1tas_A* 1tat_A* 1tar_A* 8aat_A* 9aat_A* 1aka_A* 1akb_A* 1akc_A* 3pd6_A* 3hlm_A* 3pdb_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=3.2e-12 Score=146.62 Aligned_cols=276 Identities=11% Similarity=-0.006 Sum_probs=161.8
Q ss_pred HHHHHHHHHhcCCC------Ccceee--ccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEE
Q 001989 214 LNFQTMIADLTGLP------MSNASL--LDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVV 285 (985)
Q Consensus 214 ~e~q~~ia~L~g~~------~~~~sl--~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~ 285 (985)
.++++.+|++++.. +.++.+ +.|+|.++..++.++....++||+|++++-.|+.+...++. .|.+++.
T Consensus 74 ~~lr~~ia~~~~~~~~~~~~~~~i~~v~t~G~~~al~~~~~~l~~~~~~gd~Vlv~~p~~~~~~~~~~~----~g~~~~~ 149 (401)
T 7aat_A 74 ADFTRASAELALGENSEAFKSGRYVTVQGISGTGSLRVGANFLQRFFKFSRDVYLPKPSWGNHTPIFRD----AGLQLQA 149 (401)
T ss_dssp HHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEEESCCTTHHHHHHH----TTCEEEE
T ss_pred HHHHHHHHHHhcCCCccccccCceEEEecCcchHHHHHHHHHHHHhccCCCEEEEcCCCchhHHHHHHH----cCCeeEe
Confidence 45667777777543 567766 89999877766544321113799999999999999888754 4777777
Q ss_pred eCch----------hhhc----cCCCEeEEEEEcC-CCCeee---ccHHHHHHHHHhCCcEEEEEecCccccCCCC----
Q 001989 286 SDLK----------DIDY----KSGDVCGVLVQYP-GTEGEV---LDYGDFIKNAHANGVKVVMATDLLALTILKP---- 343 (985)
Q Consensus 286 v~~~----------~l~~----l~~~t~~V~v~~p-n~~G~v---~di~~I~~~a~~~galliV~a~~~~lg~l~~---- 343 (985)
++.+ ++++ +.+++++|++.+| |.+|.+ +++++|+++|+++|+++++|.-...++.-..
T Consensus 150 ~~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~i~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~ 229 (401)
T 7aat_A 150 YRYYDPKTCSLDFTGAMEDISKIPEKSIILLHACAHNPTGVDPRQEQWKELASVVKKRNLLAYFDMAYQGFASGDINRDA 229 (401)
T ss_dssp EECEETTTTEECHHHHHHHHTTSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHT
T ss_pred eeeeccccCccCHHHHHHHHHhCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEccccccccCCCccccH
Confidence 7542 1222 3467888899888 789965 4689999999999999999531122221110
Q ss_pred ------CCcccceEEEecC-ccccccCCCCCCcEEEEEE---chhhHhcCCCceeeeeecCCCCcceeeecccccccccc
Q 001989 344 ------PGELGADIVVGSA-QRFGVPMGYGGPHAAFLAT---SQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRR 413 (985)
Q Consensus 344 ------~~~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~---~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irr 413 (985)
....+-.|+++|. |.|+.| |..+|++++ +++..+.+ .+ .-...++
T Consensus 230 ~~~~~~~~~~~~~i~~~S~sK~~~~~----G~RiG~l~~~~~~~~~~~~~----~~-----------------~~~~~~~ 284 (401)
T 7aat_A 230 WALRHFIEQGIDVVLSQSYAKNMGLY----GERAGAFTVICRDAEEAKRV----ES-----------------QLKILIR 284 (401)
T ss_dssp HHHHHHHHTTCCCEEEEECTTTSCCG----GGCEEEEEEECSSHHHHHHH----HH-----------------HHHHHHH
T ss_pred HHHHHHHhcCCcEEEEecCCcccccc----cCceEEEEEEeCCHHHHHHH----HH-----------------HHHHHHH
Confidence 0112345677886 777532 233788876 33322211 00 0000011
Q ss_pred cccCCCccchhHHHHHHHHHHHHH---hC--cchHHHHHHHHHHHHHHHHHHHhcCC---CeEEcCCCCcceEEE-ecCC
Q 001989 414 DKATSNICTAQALLANMAAMYAVY---HG--PEGLKTIAQRVHGLAGTFALGLKKLG---TVEVQGLPFFDTVKV-KCAD 484 (985)
Q Consensus 414 e~atsni~t~~~l~a~~aa~~l~~---~g--~~Gl~~i~~~~~~~a~~l~~~L~~~g---~~~~~~~~~~~~~~~-~~~~ 484 (985)
..+++.. ......++.++.. .. .+-++++.++..++.+++.+.|+++| ++++.. +...-+.+ ..+
T Consensus 285 -~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~-~~~~~~~~~~~~- 358 (401)
T 7aat_A 285 -PMYSNPP---MNGARIASLILNTPELRKEWLVEVKGMADRIISMRTQLVSNLKKEGSSHNWQHIT-DQIGMFCFTGLK- 358 (401)
T ss_dssp -HHHSSCC---HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCHHHH-HCCSSEEECCCC-
T ss_pred -hccCCCC---hHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCceec-CCcceEEecCCC-
Confidence 1122221 1111112111110 00 23366778888899999999999875 122221 11111222 222
Q ss_pred HHHHHHHHHHcCceeeeecCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 485 AHAIASAAYKIEMNLRVVDSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 485 ~~~v~~~L~~~GI~~~~~~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
.+.+...|.++||.+.. .+|+|++..++++ ||+++++|.+
T Consensus 359 ~~~~~~ll~~~gi~v~~----~~Ris~~~~~~~~-i~~~~~~l~~ 398 (401)
T 7aat_A 359 PEQVERLTKEFSIYMTK----DGRISVAGVASSN-VGYLAHAIHQ 398 (401)
T ss_dssp HHHHHHHHHHHCEECCT----TCEEEGGGCCTTT-HHHHHHHHHH
T ss_pred HHHHHHHHHhCCEeccC----CCeEEeccCChhh-HHHHHHHHHH
Confidence 55554445677998753 4799998766665 9999999863
|
| >2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate, aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=1.5e-12 Score=155.75 Aligned_cols=130 Identities=12% Similarity=0.142 Sum_probs=95.1
Q ss_pred CCCCEEEEcCCCCcccHHHHHH--CCcEEEEEcCCCC--CCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccc--cCHH
Q 001989 678 HHRNVCIIPVSAHGTNPATAAM--CGMKIVSVGTDAK--GNINIEELRKAAEANRDNLSTLMVTYP-STHGVYE--EGID 750 (985)
Q Consensus 678 ~~~~~IIv~~~~Hg~~~~~a~~--~G~~vv~v~~d~~--g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~--~di~ 750 (985)
.++|+|+++++.|..+...+.. .|++++.+|++++ +.+|+++|+++++ +++++|++++| |++|.+. .+++
T Consensus 192 ~~Gd~Vlv~~P~y~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~---~~~k~v~l~~p~NPtG~~~~~~~l~ 268 (546)
T 2zy4_A 192 KAGDKVAIGMPVFTPYIEIPELAQYALEEVAINADPSLNWQYPDSELDKLKD---PAIKIFFCVNPSNPPSVKMDQRSLE 268 (546)
T ss_dssp CTTCEEEEEESCCHHHHHHHHSTTSCCEEEEEECBGGGTTBCCHHHHGGGGS---TTEEEEEEESSCSSSCBCCCHHHHH
T ss_pred CCCCEEEEeCCCCccHHHHHHHcCCCcEEEEEecCcccCCCCCHHHHHHhhC---CCCeEEEEECCCCCCCccCCHHHHH
Confidence 4678999988866555554443 4689999998654 4699999998875 78999999999 4799886 1477
Q ss_pred HHHHHH--HHcCCEEEEEccccccccCCCCCCc--cCCcEEEeCCcccccccCCCCCCceEEEEEccc
Q 001989 751 EICKII--HDNGGQVYMDGANMNAQVGLTSPGY--IGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKH 814 (985)
Q Consensus 751 eI~~la--~~~galliVD~a~~~~~~~l~~pg~--~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~ 814 (985)
+|.++| +++|+++++|+++............ .+.++++.|++|+|+.| |.++|+++++++
T Consensus 269 ~l~~~a~~~~~~~~ii~De~y~~~~~~~~s~~~~~~~~~i~~~S~SK~~g~~----GlRiG~~~~~~~ 332 (546)
T 2zy4_A 269 RVRNIVAEHRPDLMILTDDVYGTFADDFQSLFAICPENTLLVYSFSKYFGAT----GWRLGVVAAHQQ 332 (546)
T ss_dssp HHHHHHHHTCTTCEEEEECTTGGGSTTCCCHHHHCGGGEEEEEESTTTTTCG----GGCEEEEEEESS
T ss_pred HHHHHHHhccCCcEEEEeCcchhhcccCcCHHHhCCCCEEEEEeCccccCCC----CcceEEEEECCH
Confidence 788898 7889999999998521111111111 13568889999998543 677999998875
|
| >3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare} | Back alignment and structure |
|---|
Probab=99.42 E-value=4.8e-12 Score=149.98 Aligned_cols=280 Identities=13% Similarity=0.106 Sum_probs=169.6
Q ss_pred hhHHHHHHHHHHHHHHhcC--CCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEE
Q 001989 207 QGRLESLLNFQTMIADLTG--LPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVV 284 (985)
Q Consensus 207 qg~l~~i~e~q~~ia~L~g--~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~ 284 (985)
+|..+...+..+.+.+..| .++.++.+++|+|.++..++.++.. ++||+|+++.-.|+.+...++. .|.+++
T Consensus 134 ~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~--~~gd~Vlv~~p~y~~~~~~~~~----~g~~~~ 207 (500)
T 3tcm_A 134 QGIHGLRDAIASGIASRDGFPANADDIFLTDGASPGVHLMMQLLIR--NEKDGILVPIPQYPLYSASIAL----HGGALV 207 (500)
T ss_dssp TCCHHHHHHHHHHHHHHHSSCCCGGGEEEESSSHHHHHHHHHHHCC--STTEEEEEEESCCTHHHHHHHH----TTCEEE
T ss_pred cChHHHHHHHHHHHHhhcCCCCCcccEEEcCCHHHHHHHHHHHHcC--CCCCEEEEeCCCcHhHHHHHHH----cCCEEE
Confidence 3443333333333333334 5677899999999887776665421 3789999999999999988754 477777
Q ss_pred EeCc----------hhhhc-cCC------CEeEEEEEcC-CCCeeec---cHHHHHHHHHhCCcEEEEEecCccccCCCC
Q 001989 285 VSDL----------KDIDY-KSG------DVCGVLVQYP-GTEGEVL---DYGDFIKNAHANGVKVVMATDLLALTILKP 343 (985)
Q Consensus 285 ~v~~----------~~l~~-l~~------~t~~V~v~~p-n~~G~v~---di~~I~~~a~~~galliV~a~~~~lg~l~~ 343 (985)
.+++ ++|++ +.+ ++++|++.+| |++|.+. ++++|+++|+++|+++++| +..+......
T Consensus 208 ~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~k~ivl~~p~NPtG~~~s~~~l~~i~~la~~~~~~li~D-eay~~~~~~~ 286 (500)
T 3tcm_A 208 PYYLNESTGWGLETSDVKKQLEDARSRGINVRALVVINPGNPTGQVLAEENQYDIVKFCKNEGLVLLAD-EVYQENIYVD 286 (500)
T ss_dssp EEECBTTTTSBCCHHHHHHHHHHHHHTTCEEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEE-CTTTTCBCCT
T ss_pred EEecccccCCCCCHHHHHHHHHHHHhcCCCceEEEEECCCCCCcccCCHHHHHHHHHHHHHcCCEEEEe-cCccccccCC
Confidence 6643 34555 543 7899999998 7899885 5788888899999999995 3333222211
Q ss_pred -----C-----Cccc-----c-eEEEecC-ccc-cccCCCCCCcEEEEEE---chhhHhcCCCceeeeeecCCCCcceee
Q 001989 344 -----P-----GELG-----A-DIVVGSA-QRF-GVPMGYGGPHAAFLAT---SQEYKRMMPGRIVGVSIDSSGKPALRV 402 (985)
Q Consensus 344 -----~-----~~~G-----a-Di~v~s~-k~l-g~P~~~GGP~~G~l~~---~~~~~~~lp~~~vG~t~d~~g~~~~~l 402 (985)
+ .++| . .|+++|. |.| |.| | -.+|++.+ ++++++.+-
T Consensus 287 ~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~-G---~R~G~~~~~~~~~~~~~~l~------------------ 344 (500)
T 3tcm_A 287 NKKFHSFKKIVRSLGYGEEDLPLVSYQSVSKGYYGEC-G---KRGGYFEITGFSAPVREQIY------------------ 344 (500)
T ss_dssp TCCCCCHHHHHHHTTCSSSCCCEEEEEESSSTTTCCG-G---GCCEEEEEESCCTTHHHHHH------------------
T ss_pred CCCCCcHHHHHHHhccccCCeEEEEEecCCccCCCCC-c---cceEEEEEeCCCHHHHHHHH------------------
Confidence 0 0121 2 2566675 877 332 2 23488877 566554430
Q ss_pred ecccccccccccccCCCccchhHHHHHHHHHHHHH---------hCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCC-
Q 001989 403 AMQTREQHIRRDKATSNICTAQALLANMAAMYAVY---------HGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGL- 472 (985)
Q Consensus 403 ~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~---------~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~- 472 (985)
..+ ..+.|++......++.+ +.- ...+-++++.++..++++++.+.|+++.|+++..+
T Consensus 345 -------~~~----~~~~~~~~~~q~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~~g~~~~~~~ 412 (500)
T 3tcm_A 345 -------KIA----SVNLCSNITGQILASLV-MNPPKASDESYASYKAEKDGILASLARRAKALEHAFNKLEGITCNEAE 412 (500)
T ss_dssp -------HHH----HTTCCCCHHHHHHHHHH-HSCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTEECCCCC
T ss_pred -------HHH----hcccCCCHHHHHHHHHH-hcCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEecCC
Confidence 000 12233333222222211 110 00123566778888999999999999833887632
Q ss_pred -CCcceEEEecCC-------------HHH-HHHHHHHcCceeeee-------cCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 473 -PFFDTVKVKCAD-------------AHA-IASAAYKIEMNLRVV-------DSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 473 -~~~~~~~~~~~~-------------~~~-v~~~L~~~GI~~~~~-------~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
..+.-+.+..+. ... +.+.|.++||.+... ..+.+|+++. +++++|+++++.|..
T Consensus 413 g~~~~~~~~~lp~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~~~g~~~iRis~~--~~~e~i~~~i~~l~~ 489 (500)
T 3tcm_A 413 GAMYVFPQICLPQKAIEAAKAANKAPDAFYALRLLESTGIVVVPGSGFGQVPGTWHFRCTIL--PQEDKIPAVISRFTV 489 (500)
T ss_dssp BTTEECCEECCCHHHHHHHHHHTSCHHHHHHHHHHHHHCEECEESTTTCCCTTCCBEEEESC--SCTTTHHHHHHHHHH
T ss_pred eEEEEeeeecCchhhHHHHHhcCCCcHHHHHHHHHHHCCEEEEeCcccCCCCCCCEEEEEEC--CCHHHHHHHHHHHHH
Confidence 222111233321 111 335566789987542 1357999999 899999999998874
|
| >1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC, malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4 PDB: 3lg0_A 3ntj_A | Back alignment and structure |
|---|
Probab=99.42 E-value=1.6e-11 Score=142.63 Aligned_cols=275 Identities=14% Similarity=0.156 Sum_probs=162.1
Q ss_pred HHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhh-h--h-c--CCC-CEEEEcCC-CChhHHHHHHHhhc-----C
Q 001989 212 SLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNN-I--Q-K--GKK-KTFIIASN-CHPQTIDICITRAD-----G 278 (985)
Q Consensus 212 ~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~-~--~-~--~~g-~~Vlv~~~-~H~s~~~~~~~~a~-----~ 278 (985)
...++++.+++++|.+ ++.+++|||.++++++.+.+ + . + .+| ++||+.+. .|..+...+..... .
T Consensus 108 ~~~~l~~~la~~~g~~--~v~~~~sGseA~~~al~~a~~~~~~~~g~~~gr~~vi~~~~~yhg~~~~~~~~~g~~~~~~~ 185 (433)
T 1z7d_A 108 PLGICERYLTNLLGYD--KVLMMNTGAEANETAYKLCRKWGYEVKKIPENMAKIVVCKNNFSGRTLGCISASTTKKCTSN 185 (433)
T ss_dssp HHHHHHHHHHHHHTCS--EEEEESSHHHHHHHHHHHHHHHHHHTSCCCTTCCEEEEETTC--------------------
T ss_pred HHHHHHHHHHhhcCCC--eEEEeCCHHHHHHHHHHHHHHHhhhccCCCCCCCeEEEEeCCcCCcchhhhcccCCcccccc
Confidence 3456778899999854 58889999988887775432 1 1 0 134 88988875 45544444321100 0
Q ss_pred CC---eEEEEeC---chhhhc-c-CCCEeEEEEEcC-CCCeeec----cHHHHHHHHHhCCcEEEEEecCcc-ccCCCCC
Q 001989 279 FD---IKVVVSD---LKDIDY-K-SGDVCGVLVQYP-GTEGEVL----DYGDFIKNAHANGVKVVMATDLLA-LTILKPP 344 (985)
Q Consensus 279 ~g---i~v~~v~---~~~l~~-l-~~~t~~V~v~~p-n~~G~v~----di~~I~~~a~~~galliV~a~~~~-lg~l~~~ 344 (985)
++ ..+..++ +++|++ + ++++++|++... +..|.+. ++++|.++|+++|+++++| +..+ +|-....
T Consensus 186 ~~p~~~~v~~~~~~d~~~le~~l~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~D-Ev~~g~g~~g~~ 264 (433)
T 1z7d_A 186 FGPFAPQFSKVPYDDLEALEEELKDPNVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVAD-EVQTGLGRTGKL 264 (433)
T ss_dssp ------CEEEECTTCHHHHHHHHTSTTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEE-CTTTTTTTTSSS
T ss_pred CCCCCCCeEEeCCCCHHHHHHHhCCCCEEEEEEECCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEe-cCccCCCcCCcc
Confidence 00 2344443 456776 7 678888777643 4579875 8999999999999999995 3332 3321111
Q ss_pred ---Cc--ccceEEEecCccccccCCCCC-CcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCC
Q 001989 345 ---GE--LGADIVVGSAQRFGVPMGYGG-PHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATS 418 (985)
Q Consensus 345 ---~~--~GaDi~v~s~k~lg~P~~~GG-P~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~ats 418 (985)
.. ...|+++. +|.|+ || --+|++++++++++.+... .. ..|.
T Consensus 265 ~~~~~~~~~~di~t~-sK~l~-----~G~~~~G~v~~~~~~~~~l~~~----------~~----------------~~t~ 312 (433)
T 1z7d_A 265 LCVHHYNVKPDVILL-GKALS-----GGHYPISAVLANDDIMLVIKPG----------EH----------------GSTY 312 (433)
T ss_dssp SGGGGGTCCCSEEEE-CGGGG-----TTSSCCEEEEECHHHHTTCCTT----------CC----------------CCTT
T ss_pred hhhHhcCCCCCEEEE-Ccccc-----CCCCCeEEEEECHHHHhhhccc----------cc----------------cccC
Confidence 11 24687733 48775 22 1268888999887766321 00 0111
Q ss_pred CccchhH-HHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcC--CCeE---Ec-CCCCcceEEEecC--CHHHHH
Q 001989 419 NICTAQA-LLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKL--GTVE---VQ-GLPFFDTVKVKCA--DAHAIA 489 (985)
Q Consensus 419 ni~t~~~-l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~--g~~~---~~-~~~~~~~~~~~~~--~~~~v~ 489 (985)
+.+.. ..+..++ +..+..+ ++.++..++.++++++|+++ + +. .+ +...+-.+.+... .+.++.
T Consensus 313 --~~~~~~~aaa~aa--l~~~~~~---~~~~~~~~~~~~l~~~L~~l~~~-~~~~~~~~~~g~~~~i~~~~~~~~~~~~~ 384 (433)
T 1z7d_A 313 --GGNPLAASICVEA--LNVLINE---KLCENAEKLGGPFLENLKRELKD-SKIVRDVRGKGLLCAIEFKNELVNVLDIC 384 (433)
T ss_dssp --TTCHHHHHHHHHH--HHHHHHT---THHHHHHHHHHHHHHHHHHHHTT-CTTEEEEEEETTEEEEEECTTTCCHHHHH
T ss_pred --CCCHHHHHHHHHH--HHHHHhc---cHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEEeeeeEEEEEEccChhHHHHHH
Confidence 11111 2122222 2333222 45667778888998888765 3 32 11 1111212233222 277899
Q ss_pred HHHHHcCceeeeecCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 490 SAAYKIEMNLRVVDSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 490 ~~L~~~GI~~~~~~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
+.|.++||.+.....+.+|++++..+|++|||+++++|.+
T Consensus 385 ~~l~~~Gv~v~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~ 424 (433)
T 1z7d_A 385 LKLKENGLITRDVHDKTIRLTPPLCITKEQLDECTEIIVK 424 (433)
T ss_dssp HHHHHTTEECCEETTTEEEECCCTTCCHHHHHHHHHHHHH
T ss_pred HHHHHCCeEEecCCCCEEEEECCcCCCHHHHHHHHHHHHH
Confidence 9999999998765568999999999999999999999974
|
| >2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal phosphate, PLP, RV3290C, lysine amino transferase; HET: PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A* 2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A | Back alignment and structure |
|---|
Probab=99.39 E-value=1.9e-11 Score=142.80 Aligned_cols=278 Identities=9% Similarity=0.048 Sum_probs=168.7
Q ss_pred HHHHHHHHHHhcC-CCCcceeeccchHHHHHHHHH-Hhhhhc---------C-CCCEEEEcCC-CChhHHHHHHH-----
Q 001989 213 LLNFQTMIADLTG-LPMSNASLLDEGTAAAEAMAM-CNNIQK---------G-KKKTFIIASN-CHPQTIDICIT----- 274 (985)
Q Consensus 213 i~e~q~~ia~L~g-~~~~~~sl~~~~ta~~ea~~~-a~~~~~---------~-~g~~Vlv~~~-~H~s~~~~~~~----- 274 (985)
..++.+.++++++ .+..++.+++|||.++++++. ++.+.. + +|++||+.+. .|......+..
T Consensus 103 ~~~la~~la~~~~~~~~~~v~~~~~gseA~~~aik~a~~~~~~~~~~~~~~~~~~~~Vi~~~~~yhg~~~~~~~~~~~~~ 182 (449)
T 2cjg_A 103 MARFVETFARVLGDPALPHLFFVEGGALAVENALKAAFDWKSRHNQAHGIDPALGTQVLHLRGAFHGRSGYTLSLTNTKP 182 (449)
T ss_dssp HHHHHHHHHHHHCCTTCCEEEEESSHHHHHHHHHHHHHHHHHHHHHHTTSCTTCCCEEEEETTCCCCSSTTGGGTCCSCH
T ss_pred HHHHHHHHHHhcCCCCCCEEEEeCchHHHHHHHHHHHHHHhcccccccccccCCCCEEEEECCCcCCcccchhhhcCCch
Confidence 3456678999987 455678899999998888774 332221 1 2789998885 45433322110
Q ss_pred ----hhcCCCeEEEEeCchh------------------hhc-c---CCCEeEEEEEcC-CCCeeecc----HHHHHHHHH
Q 001989 275 ----RADGFDIKVVVSDLKD------------------IDY-K---SGDVCGVLVQYP-GTEGEVLD----YGDFIKNAH 323 (985)
Q Consensus 275 ----~a~~~gi~v~~v~~~~------------------l~~-l---~~~t~~V~v~~p-n~~G~v~d----i~~I~~~a~ 323 (985)
......-.+..++.++ |++ + ++++++|++..+ |.+|.+.+ +++|.++|+
T Consensus 183 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~ 262 (449)
T 2cjg_A 183 TITARFPKFDWPRIDAPYMRPGLDEPAMAALEAEALRQARAAFETRPHDIACFVAEPIQGEGGDRHFRPEFFAAMRELCD 262 (449)
T ss_dssp HHHTTSCCCCCCEECCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHSTTTEEEEEECSEETTTTCEECCHHHHHHHHHHHH
T ss_pred hhcccCCCCCCCcEEEcCCCchhhccccchhhHHHHHHHHHHHHhcCCceEEEEEeCcCCCCCCccCCHHHHHHHHHHHH
Confidence 0001112455554433 666 6 468888877654 67898777 999999999
Q ss_pred hCCcEEEEEecCcc-ccCCCCC---C--cccceEEEecCccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCC
Q 001989 324 ANGVKVVMATDLLA-LTILKPP---G--ELGADIVVGSAQRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGK 397 (985)
Q Consensus 324 ~~galliV~a~~~~-lg~l~~~---~--~~GaDi~v~s~k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~ 397 (985)
++|+++++| +.++ +|..... . ....|+++. +|+| | +|++++++++.+.+.+.+.+ .+
T Consensus 263 ~~g~lli~D-Ev~~g~g~~g~~~~~~~~~~~~di~t~-sK~l--~-------iG~~~~~~~~~~~l~~~~~~-----~~- 325 (449)
T 2cjg_A 263 EFDALLIFD-EVQTGCGLTGTAWAYQQLDVAPDIVAF-GKKT--Q-------VCGVMAGRRVDEVADNVFAV-----PS- 325 (449)
T ss_dssp HTTCEEEEE-CTTTTTTTTSSSSTHHHHTCCCSEEEE-CGGG--S-------SEEEEECGGGGGSTTCTTTS-----TT-
T ss_pred HCCcEEEEe-ccccCCCccCcceeecccCCCceEEEe-cCcc--c-------EEEEEECHHHhhhhhhcccC-----Cc-
Confidence 999999995 3333 4322111 1 134687654 3877 4 46788888887765321110 00
Q ss_pred cceeeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcC----CC-eEEcCC
Q 001989 398 PALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKL----GT-VEVQGL 472 (985)
Q Consensus 398 ~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~----g~-~~~~~~ 472 (985)
+...|.+. ++.+..+..+++ ..+.. +++.++..++.++++++|+++ +. +....
T Consensus 326 ---------------~~~~t~~~-n~~~~~aa~aal--~~~~~---~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~- 383 (449)
T 2cjg_A 326 ---------------RLNSTWGG-NLTDMVRARRIL--EVIEA---EGLFERAVQHGKYLRARLDELAADFPAVVLDPR- 383 (449)
T ss_dssp ---------------SSCCSSSS-CHHHHHHHHHHH--HHHHH---HTHHHHHHHHHHHHHHHHHHHHHHSTTTSEEEE-
T ss_pred ---------------ccccCCCC-CHHHHHHHHHHH--HHHHh---ccHHHHHHHHHHHHHHHHHHHHhhCCCceeeEe-
Confidence 00112111 112222222332 33222 345677788889999988764 21 22111
Q ss_pred CCcceEEEecCC---HHHHHHHHHHcCceeeeecCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 473 PFFDTVKVKCAD---AHAIASAAYKIEMNLRVVDSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 473 ~~~~~~~~~~~~---~~~v~~~L~~~GI~~~~~~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
+...-+.+.+++ ..++.++|.++||.+.....+.+|++++..+|++|||+++++|.+
T Consensus 384 ~~g~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~g~~~iRi~~~~~~t~e~i~~~l~~l~~ 443 (449)
T 2cjg_A 384 GRGLMCAFSLPTTADRDELIRQLWQRAVIVLPAGADTVRFRPPLTVSTAEIDAAIAAVRS 443 (449)
T ss_dssp EETTEEEEECSSHHHHHHHHHHHHHTTEECEEETTTEEEECCCTTCCHHHHHHHHHHHHH
T ss_pred eccEEEEEEECChHHHHHHHHHHHHCCeEEecCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 111224455554 678999999999988765568999999999999999999999974
|
| >3d6k_A Putative aminotransferase; APC82464, corynebacterium diphthe structural genomics, PSI-2, protein structure initiative; 2.00A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.39 E-value=1.9e-11 Score=141.36 Aligned_cols=325 Identities=13% Similarity=0.129 Sum_probs=192.3
Q ss_pred HHHHHHHHHHHhcCCCccceecCCCCCC---CCCcHHHHHHHHhC-----CccccccCCChhhHhhhHHHHHHHHHHHHH
Q 001989 150 ESQMIEHMQKLASMNKVYKSFIGMGYYN---THVPPVILRNIMEN-----PAWYTQYTPYQAEIAQGRLESLLNFQTMIA 221 (985)
Q Consensus 150 e~e~~~~~~~l~~~n~~~~~~lG~g~y~---~~~p~~v~~~i~~~-----~~~~t~~~pyq~e~sqg~l~~i~e~q~~ia 221 (985)
...+.+.+.++..++... + ++.|..+ ...|+.+.+++... +.....|.+.+ | ..++++.+|
T Consensus 18 ~~~~~~~~~~l~~~~~~i-~-l~~g~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~Y~~~~-----G----~~~lr~~ia 86 (422)
T 3d6k_A 18 REEVTAKYAELKAKNLSL-D-LTRGKPSAEQLDLSNDLLSLPGGDFRTKDGVDCRNYGGLL-----G----IADIRELWA 86 (422)
T ss_dssp CHHHHHHHHHHHHTTCCE-E-CCCCSCCHHHHHTTGGGGGCSTTCCBCTTCCBTTSSCCSS-----C----CHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCeE-e-CCCCCCChhhCCCcHHHHHHHHHHHhhccchhhhCCCCCC-----C----CHHHHHHHH
Confidence 345666777776654422 2 3555544 23444443333221 11123454321 1 235778999
Q ss_pred HhcCCCCcceeeccchHHHH--HHHHHHhhhhc---C-------CCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc-
Q 001989 222 DLTGLPMSNASLLDEGTAAA--EAMAMCNNIQK---G-------KKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL- 288 (985)
Q Consensus 222 ~L~g~~~~~~sl~~~~ta~~--ea~~~a~~~~~---~-------~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~- 288 (985)
+++|.++.++.+++|++.++ ..+..++. .. + .+++|+++.-.|+.+...++. .|.+++.++.
T Consensus 87 ~~~~~~~~~i~~t~G~~~al~l~~~~~~l~-~~~~~g~~~~~~~d~~~Vl~~~p~y~~~~~~~~~----~g~~~~~v~~~ 161 (422)
T 3d6k_A 87 EALGLPADLVVAQDGSSLNIMFDLISWSYT-WGNNDSSRPWSAEEKVKWLCPVPGYDRHFTITEH----FGFEMINVPMT 161 (422)
T ss_dssp HHHTCCGGGEEECSSCHHHHHHHHHHHHHH-HCCTTCSSCGGGSSCCEEEEEESCCHHHHHHHHH----HTCEEEEEEEE
T ss_pred HHhCCChhHEEEecchHHHHHHHHHHHHhc-CcccccccccccCCCCEEEEeCCccHHHHHHHHH----cCCEEEecCCC
Confidence 99999988999999988664 33333331 21 0 145899999999999888754 3777776653
Q ss_pred ------hhhhc-cCC-CEeEEE-EEcC-CCCeeeccHH---HHHHHHH-hCCcEEEEEecCccc-cCCC------CC---
Q 001989 289 ------KDIDY-KSG-DVCGVL-VQYP-GTEGEVLDYG---DFIKNAH-ANGVKVVMATDLLAL-TILK------PP--- 344 (985)
Q Consensus 289 ------~~l~~-l~~-~t~~V~-v~~p-n~~G~v~di~---~I~~~a~-~~galliV~a~~~~l-g~l~------~~--- 344 (985)
++|++ +++ ++++|+ +.+| |.+|.+.+.+ +|+++|+ ++|+++++| +..+. +... +.
T Consensus 162 ~~g~d~~~l~~~l~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~~~~~~~~~li~D-e~y~~~~~~~~~~~~~~~~~~ 240 (422)
T 3d6k_A 162 DEGPDMGVVRELVKDPQVKGMWTVPVFGNPTGVTFSEQTCRELAEMSTAAPDFRIVWD-NAYALHTLSDEFPIVHNVIEF 240 (422)
T ss_dssp TTEECHHHHHHHHTSTTEEEEEECCSSCTTTCCCCCHHHHHHHHHCCCSSTTCEEEEE-CTTTTCBSSSCCCCCCCHHHH
T ss_pred CCCCCHHHHHHHHhcCCCeEEEEcCCCCCCCCCCCCHHHHHHHHHHHhhccCCEEEEE-CCccccccCCCCCCCcChhhH
Confidence 45665 664 789888 4566 7899998765 8888888 899999995 33331 1111 11
Q ss_pred ----CcccceEEEecC-ccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCC
Q 001989 345 ----GELGADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSN 419 (985)
Q Consensus 345 ----~~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsn 419 (985)
+..+.+|+++|. |. +.| |-.+|++++++++++.+... ++ .. +
T Consensus 241 ~~~~~~~~~~i~~~S~SK~-~~~----GlriG~~~~~~~l~~~l~~~-------------------------~~-~~--~ 287 (422)
T 3d6k_A 241 AQAAGNPNRFWFMSSTSKI-THA----GSGVSFFASSKENIEWYASH-------------------------AN-VR--G 287 (422)
T ss_dssp HHHTTCTTCEEEEEESTTT-SCT----TSSCEEEECCHHHHHHHHHH-------------------------HH-HH--C
T ss_pred hhccCCCCcEEEEcChhhh-cCc----ccceEEEEeCHHHHHHHHHH-------------------------HH-hh--c
Confidence 234667888887 65 433 33479999988877655100 00 00 1
Q ss_pred ccchhHHHHHHHHHHHHHhCc-----chHHHHHHHHHHHHHHHHHHHhc----CCCeEEcCCCCcceEEEecCC--HHHH
Q 001989 420 ICTAQALLANMAAMYAVYHGP-----EGLKTIAQRVHGLAGTFALGLKK----LGTVEVQGLPFFDTVKVKCAD--AHAI 488 (985)
Q Consensus 420 i~t~~~l~a~~aa~~l~~~g~-----~Gl~~i~~~~~~~a~~l~~~L~~----~g~~~~~~~~~~~~~~~~~~~--~~~v 488 (985)
.+++. + +..++. ..+.. +-++++.++..++.+++.+.|.+ +|++++..+....-+.+..+. ..++
T Consensus 288 ~~~~~-~-~q~a~~--~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~l~~~~~~~~~~p~~g~~~~~~~~~~~~~~~ 363 (422)
T 3d6k_A 288 IGPNK-L-NQLAHA--QFFGDVAGLKAHMLKHAASLAPKFERVLEILDSRLSEYGVAKWTSPTGGYFISVDVVPGTASRV 363 (422)
T ss_dssp SCCCH-H-HHHHHH--HHHCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTCEEECCCSBSSCEEEEESTTCHHHH
T ss_pred CCCCH-H-HHHHHH--HHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCceEEeCCCcceEEEEECCCCCHHHH
Confidence 11111 1 112222 22222 12444555555555666555543 443665432111123344443 7788
Q ss_pred HHHHHHcCceeee----e------cCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 489 ASAAYKIEMNLRV----V------DSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 489 ~~~L~~~GI~~~~----~------~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
.+.|.++||.+.. . ..+.+|+|++. +++++++++++.|..
T Consensus 364 ~~~l~~~gV~v~~~g~~f~~~~~~~~~~iRis~~~-~~~e~i~~~~~~l~~ 413 (422)
T 3d6k_A 364 VELAKEAGIALTGAGSSFPLHNDPNNENIRLAPSL-PPVAELEVAMDGFAT 413 (422)
T ss_dssp HHHHHHTTEECCCTTTTSGGGCCTTSCEEEECCSS-SCHHHHHHHHHHHHH
T ss_pred HHHHHHCCeEEEcCccccCCCCCCCCCeEEEecCC-CCHHHHHHHHHHHHH
Confidence 8889999998754 1 13689999998 899999999999974
|
| >3pj0_A LMO0305 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, lyase; HET: LLP MSE; 1.80A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.38 E-value=7.3e-12 Score=141.12 Aligned_cols=305 Identities=16% Similarity=0.134 Sum_probs=178.3
Q ss_pred eecCCCCCCCCCcHHHHHHHHhCCccccccCCChhhHhhhHHHHHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHh
Q 001989 169 SFIGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCN 248 (985)
Q Consensus 169 ~~lG~g~y~~~~p~~v~~~i~~~~~~~t~~~pyq~e~sqg~l~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~ 248 (985)
...|.|..+...++.+.+++.+... . ..|.+. ....++++.+|+++|.+.. .++.+||.+++.++.++
T Consensus 16 ~~~~~~~~~~g~~p~v~~ai~~~~~-~---~~~~~~------~~~~~l~~~la~~~~~~~~--i~~~~g~~a~~~a~~~~ 83 (359)
T 3pj0_A 16 KLGGNGPRNVGVLTEALQNIDDNLE-S---DIYGNG------AVIEDFETKIAKILGKQSA--VFFPSGTMAQQIALRIW 83 (359)
T ss_dssp ESSSSSCCBHHHHHHHTTTSCTTCB-C---CBTTBS------HHHHHHHHHHHHHHTCSEE--EEESCHHHHHHHHHHHH
T ss_pred hhcCCCccccCCCHHHHHHHHhhcc-c---CcccCC------HHHHHHHHHHHHHhCCCcE--EEeCCHHHHHHHHHHHH
Confidence 4456666555556666545444221 1 222221 2345788899999998763 56688887766665544
Q ss_pred hhhcCCCCE--EEEcCCCChhHHHHHHHhhcCCCeEEEEeCc-------hhhhccCCCEeEEEEEcC-CCC-eeeccH--
Q 001989 249 NIQKGKKKT--FIIASNCHPQTIDICITRADGFDIKVVVSDL-------KDIDYKSGDVCGVLVQYP-GTE-GEVLDY-- 315 (985)
Q Consensus 249 ~~~~~~g~~--Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~-------~~l~~l~~~t~~V~v~~p-n~~-G~v~di-- 315 (985)
.. ++|+ |+++...|+....... .+...|++++.++. ++|++..+++++|++++| |++ |.+.|.
T Consensus 84 ~~---~g~~~vvi~~~~~~~~~~~~~~-~~~~~g~~~~~v~~~~~~~d~~~l~~~~~~~~~v~~~~p~n~~~G~~~~~~~ 159 (359)
T 3pj0_A 84 AD---RKENRRVAYHPLSHLEIHEQDG-LKELQQITPLLLGTANQLLTIDDIKSLREPVSSVLIELPQREIGGQLPAFEE 159 (359)
T ss_dssp HH---HHTCCEEEECTTCHHHHSSTTH-HHHHHCCEEEECSCTTSCCCHHHHHTCSSCCSEEEEESSBGGGTSBCCCHHH
T ss_pred Hh---cCCCcEEEEeccceeeehhcch-HHHhcCceEEecCCcCCCcCHHHHHhccCCceEEEEEecccCCCcccCCHHH
Confidence 22 4454 6677777765432110 01123788888765 334434568999999998 565 788665
Q ss_pred -HHHHHHHHhCCcEEEEEecCccccC---C-CCC--CcccceEEEecC-ccccccCCCCCCcEEEEEEchhhHhcCCCce
Q 001989 316 -GDFIKNAHANGVKVVMATDLLALTI---L-KPP--GELGADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRI 387 (985)
Q Consensus 316 -~~I~~~a~~~galliV~a~~~~lg~---l-~~~--~~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~ 387 (985)
++|+++|+++|+++++|. ....+. . .++ -..++|+++.+. |+|++| +.|+++.++++++++...
T Consensus 160 l~~l~~~~~~~~~~li~D~-a~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~~~~~------~gg~~~~~~~l~~~~~~~- 231 (359)
T 3pj0_A 160 LEKISEYCHEQGISLHLDG-ARLWEITPFYQKSAEEICALFDSVYVSFYKGIGGI------AGAILAGNDDFVQEAKIW- 231 (359)
T ss_dssp HHHHHHHHHHHTCEEEEEE-TTCGGGHHHHTCCHHHHHTTCSEEEEESSSTTCCS------SCEEEEECHHHHHHHHHH-
T ss_pred HHHHHHHHHHcCCEEEEEC-cchhcchhhhCCCHHHhhccCCEEEEeccccCCCc------ceEEEECCHHHHHHHHHH-
Confidence 555999999999999953 222111 1 111 124789998887 767544 237888888887665100
Q ss_pred eeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCe
Q 001989 388 VGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTV 467 (985)
Q Consensus 388 vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~ 467 (985)
+ ....++.+ +.... +..+...+... + +..++..++++++++.|+++.++
T Consensus 232 -------------------~----~~~~~~~~--~~~~~-~~a~~~~l~~~----~-~~~~~~~~~~~~l~~~L~~~~g~ 280 (359)
T 3pj0_A 232 -------------------K----RRYGGDLI--SLYPY-ILSADYYFEKR----I-GKMAEYFEAAKGLAERFNSCSGV 280 (359)
T ss_dssp -------------------H----HHTTCCCS--CCHHH-HHHHHHHHHHH----G-GGHHHHHHHHHHHHHHHHTSTTE
T ss_pred -------------------H----HHhCCCcc--hhHHH-HHHHHHHHHHH----H-HHhHHHHHHHHHHHHHHhhCCCc
Confidence 0 00001111 11111 11111111211 2 23345677889999999998338
Q ss_pred EEc-CCCCcceEEEecCC-----HHHHHHHHHHcCceeeee----c--CCeEEEEecc---CCCHHHHHHHHHHHh
Q 001989 468 EVQ-GLPFFDTVKVKCAD-----AHAIASAAYKIEMNLRVV----D--SNTVTASFDE---TTTLEDVDKLFIVFA 528 (985)
Q Consensus 468 ~~~-~~~~~~~~~~~~~~-----~~~v~~~L~~~GI~~~~~----~--~~~lris~t~---~~t~edId~li~aL~ 528 (985)
++. .++..+-+.++++. ..++.+.|.++||.+... . .+.+|++++. ..+.+++++.++.|.
T Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~GV~v~~g~~~~~~~~~~~r~~i~~~~~~~~~e~l~~~l~~l~ 356 (359)
T 3pj0_A 281 KTVPEVPVSNMFHVYFENSADEIGAILTKIQDETGVGISGYLQEKSADVCAFEVSVGDAFAEIPAKNLELVFRCLE 356 (359)
T ss_dssp EEESSSCSSSEEEEEESSCHHHHHHHHHHHHHHHCEECCSCCEEEETTEEEEEEECCTTGGGSCHHHHHHHHHHHH
T ss_pred eeeccCCcceEEEEEecCccchhHHHHHHHHHhcCcEecCCccccCCCceEEEEEecCccccCCHHHHHHHHHHHH
Confidence 885 33333334444432 578889999999987542 1 2468888864 357888888888775
|
| >3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet, transaminase, pyridox phosphate; HET: PLP; 1.40A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=99.38 E-value=1.6e-11 Score=143.33 Aligned_cols=288 Identities=16% Similarity=0.143 Sum_probs=170.2
Q ss_pred HHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhh-hhc----CCCCEEEEcC-CCChhHHHHHHHhh-----cC--
Q 001989 212 SLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNN-IQK----GKKKTFIIAS-NCHPQTIDICITRA-----DG-- 278 (985)
Q Consensus 212 ~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~-~~~----~~g~~Vlv~~-~~H~s~~~~~~~~a-----~~-- 278 (985)
...++++.++++++.+..++.+++|||.++++++.+.+ +.+ .++++||+.+ ..|......+.... +.
T Consensus 94 ~~~~l~~~la~~~~~~~~~v~~~~ggsea~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~ 173 (449)
T 3a8u_X 94 LSFQLAEKITDLTPGNLNHVFFTDSGSECALTAVKMVRAYWRLKGQATKTKMIGRARGYHGVNIAGTSLGGVNGNRKLFG 173 (449)
T ss_dssp HHHHHHHHHHTTSSTTEEEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHCCCHHHHTTTC
T ss_pred HHHHHHHHHHHhCCCCCCEEEEcCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCChhhhhccCChhhccccC
Confidence 34567789999998777789999999998887775432 211 1568888755 56665554443210 01
Q ss_pred ---CCeEEEEeC-------------------chhhhc-cC----CCEeEEEEEcC-CCCeeecc----HHHHHHHHHhCC
Q 001989 279 ---FDIKVVVSD-------------------LKDIDY-KS----GDVCGVLVQYP-GTEGEVLD----YGDFIKNAHANG 326 (985)
Q Consensus 279 ---~gi~v~~v~-------------------~~~l~~-l~----~~t~~V~v~~p-n~~G~v~d----i~~I~~~a~~~g 326 (985)
.|+..+.++ +++|++ +. +++++|++... |.+|.+.+ +++|.++|+++|
T Consensus 174 ~~~~~~~~v~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~vi~~p~~~~tG~~~~~~~~l~~l~~l~~~~~ 253 (449)
T 3a8u_X 174 QPMQDVDHLPHTLLASNAYSRGMPKEGGIALADELLKLIELHDASNIAAVFVEPLAGSAGVLVPPEGYLKRNREICNQHN 253 (449)
T ss_dssp CCSCSEEEECCCCCGGGTTCSSSCSSSHHHHHHHHHHHHHHHCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHHT
T ss_pred CCCCCCeEecCCccccCccccCChHHHHHHHHHHHHHHHHhcCCCCEEEEEEcCccCCCCCccCCHHHHHHHHHHHHHhC
Confidence 244444322 344555 54 56777776543 45899888 999999999999
Q ss_pred cEEEEEecCc-cccCCCCC---Cccc--ceEEEecCccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcce
Q 001989 327 VKVVMATDLL-ALTILKPP---GELG--ADIVVGSAQRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPAL 400 (985)
Q Consensus 327 alliV~a~~~-~lg~l~~~---~~~G--aDi~v~s~k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~ 400 (985)
+++++| +.. ++|..... ..+| .|+++. +|+|++ |+--+|++++++++++.+... +..
T Consensus 254 ~~li~D-ev~~~~g~~g~~~~~~~~~~~~di~s~-sK~l~~----G~~~~G~~~~~~~~~~~l~~~---------~~~-- 316 (449)
T 3a8u_X 254 ILLVFD-EVITGFGRTGSMFGADSFGVTPDLMCI-AKQVTN----GAIPMGAVIASTEIYQTFMNQ---------PTP-- 316 (449)
T ss_dssp CEEEEE-CTTTTTTTTSSSSHHHHHTCCCSEEEE-CGGGGT----TSSCCEEEEEEHHHHHHHHTC---------SSC--
T ss_pred CEEEEe-ccccCccccCcchhhhhcCCCCCEEEE-cccccC----CCCceEEEEECHHHHHHhhcc---------Ccc--
Confidence 999995 344 45432221 1233 587743 388852 211267788888877665210 000
Q ss_pred eeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcC--CCCcceE
Q 001989 401 RVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQG--LPFFDTV 478 (985)
Q Consensus 401 ~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~--~~~~~~~ 478 (985)
. .+... ....|.+. ++.+..+..+++ ..+..+ ++.++..++.++++++|++++.+.++. .+...-+
T Consensus 317 ---~--~~~~~-~~~~t~~~-~~~~~aa~~aal--~~~~~~---~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~ 384 (449)
T 3a8u_X 317 ---E--YAVEF-PHGYTYSA-HPVACAAGLAAL--CLLQKE---NLVQSVAEVAPHFEKALHGIKGAKNVIDIRNFGLAG 384 (449)
T ss_dssp ---T--TSCSS-CCCCTTTT-CHHHHHHHHHHH--HHHHHT---THHHHHHHHHHHHHHHHHTTTTSTTEEEEEEETTEE
T ss_pred ---c--ccccc-cccCCCcc-cHHHHHHHHHHH--HHHHhc---CHHHHHHHHHHHHHHHHHHHhcCCCeEEEeeeEEEE
Confidence 0 00000 00112111 111222222222 333222 466777888899999998753221110 0111123
Q ss_pred EEecCC---H-----HHHHHHHHHcCceeeeecCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 479 KVKCAD---A-----HAIASAAYKIEMNLRVVDSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 479 ~~~~~~---~-----~~v~~~L~~~GI~~~~~~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
.+.++. . .++.+.|.++||.++... +.+|++++..+|++||++++++|.+
T Consensus 385 ~i~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~g-~~iRis~~~~~t~~~i~~~l~~l~~ 442 (449)
T 3a8u_X 385 AIQIAPRDGDAIVRPFEAGMALWKAGFYVRFGG-DTLQFGPTFNSKPQDLDRLFDAVGE 442 (449)
T ss_dssp EEEECCBTTBSSHHHHHHHHHHHHHTEECEEET-TEEEECCCTTCCHHHHHHHHHHHHH
T ss_pred EEEEecCcccccccHHHHHHHHHHCCcEEecCC-CEEEEECCCcCCHHHHHHHHHHHHH
Confidence 344332 1 268999999999987653 8899999999999999999999974
|
| >1ajs_A Aspartate aminotransferase; PIG, in the presence of ligand 2-methylaspartate; HET: LLP PLA; 1.60A {Sus scrofa} SCOP: c.67.1.1 PDB: 1ajr_A* 3ii0_A* 1aat_A 2cst_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=1.2e-11 Score=142.37 Aligned_cols=273 Identities=13% Similarity=0.015 Sum_probs=166.6
Q ss_pred HHHHHHHHHhc-CC-----CCcceee--ccchHHHHHHHHHHhhhhcCCC-----CEEEEcCCCChhHHHHHHHhhcCCC
Q 001989 214 LNFQTMIADLT-GL-----PMSNASL--LDEGTAAAEAMAMCNNIQKGKK-----KTFIIASNCHPQTIDICITRADGFD 280 (985)
Q Consensus 214 ~e~q~~ia~L~-g~-----~~~~~sl--~~~~ta~~ea~~~a~~~~~~~g-----~~Vlv~~~~H~s~~~~~~~~a~~~g 280 (985)
.++++.+|+++ +. ++.++.+ +.|+|.+++.+....... ++| |+|+++...|+.+...++. .|
T Consensus 77 ~~lr~~la~~~~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~-~~g~~~~~d~Vl~~~p~y~~~~~~~~~----~g 151 (412)
T 1ajs_A 77 AEFRTCASRLALGDDSPALQEKRVGGVQSLGGTGALRIGAEFLARW-YNGTNNKDTPVYVSSPTWENHNGVFTT----AG 151 (412)
T ss_dssp HHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHH-SSSSSCCCSCEEEEESCCTHHHHHHHH----TT
T ss_pred HHHHHHHHHHHhcCCCCccCCCcEEEEECCCcHHHHHHHHHHHHHh-CcCcCCCCCeEEEcCCCcHHHHHHHHH----cC
Confidence 45777888888 54 5567888 999998888775322211 267 9999999999998887754 45
Q ss_pred eE-EEEeCc----------hhhhc-cC---CCEeEEEEEcC-CCCeeec---cHHHHHHHHHhCCcEEEEEecCccccCC
Q 001989 281 IK-VVVSDL----------KDIDY-KS---GDVCGVLVQYP-GTEGEVL---DYGDFIKNAHANGVKVVMATDLLALTIL 341 (985)
Q Consensus 281 i~-v~~v~~----------~~l~~-l~---~~t~~V~v~~p-n~~G~v~---di~~I~~~a~~~galliV~a~~~~lg~l 341 (985)
.+ ++.++. +++++ ++ ++++++++.+| |.+|.+. ++++|+++|+++|+++++|.-...++.-
T Consensus 152 ~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~y~~~~~~ 231 (412)
T 1ajs_A 152 FKDIRSYRYWDTEKRGLDLQGFLSDLENAPEFSIFVLHACAHNPTGTDPTPEQWKQIASVMKRRFLFPFFDSAYQGFASG 231 (412)
T ss_dssp CSCEEEEECEETTTTEECHHHHHHHHHHSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTTTS
T ss_pred CceeEEEeeecCCCCccCHHHHHHHHHhCCCCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEcccccccCC
Confidence 66 555543 34554 43 36778878888 7799884 5779999999999999995321223211
Q ss_pred C---C---CCcc---c-ceEEEecC-ccccccCCCCCCc--EEEEEE---chhhHhcCCCceeeeeecCCCCcceeeecc
Q 001989 342 K---P---PGEL---G-ADIVVGSA-QRFGVPMGYGGPH--AAFLAT---SQEYKRMMPGRIVGVSIDSSGKPALRVAMQ 405 (985)
Q Consensus 342 ~---~---~~~~---G-aDi~v~s~-k~lg~P~~~GGP~--~G~l~~---~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~ 405 (985)
. . ...+ + -+|++.|. |.++ +|| +|++++ ++++++.+-.. +
T Consensus 232 ~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~------~~G~riG~~~~~~~~~~~~~~~~~~-----------------~- 287 (412)
T 1ajs_A 232 NLEKDAWAIRYFVSEGFELFCAQSFSKNFG------LYNERVGNLTVVAKEPDSILRVLSQ-----------------M- 287 (412)
T ss_dssp CHHHHTHHHHHHHHTTCCEEEEEECTTTSC------CGGGCEEEEEEECSSHHHHHHHHHH-----------------H-
T ss_pred cccccchHHHHHhccCCcEEEEEecccccC------CCCcceEEEEEecCCHHHHHHHHHH-----------------H-
Confidence 0 0 0111 2 23777887 7564 234 689998 77644332000 0
Q ss_pred cccccccccccCCCccchhHHHHHHHHHHHHHhC-----cchHHHHHHHHHHHHHHHHHHHhcCC---CeEEcCCCCcce
Q 001989 406 TREQHIRRDKATSNICTAQALLANMAAMYAVYHG-----PEGLKTIAQRVHGLAGTFALGLKKLG---TVEVQGLPFFDT 477 (985)
Q Consensus 406 tre~~irre~atsni~t~~~l~a~~aa~~l~~~g-----~~Gl~~i~~~~~~~a~~l~~~L~~~g---~~~~~~~~~~~~ 477 (985)
....+ .+.+..+.....+..+++ .... .+.++++.++..++.+++.+.|+++| ++++..+ ...-
T Consensus 288 ---~~~~~--~~~~~~~~~~~~a~~~~l--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~-~~~~ 359 (412)
T 1ajs_A 288 ---QKIVR--VTWSNPPAQGARIVARTL--SDPELFHEWTGNVKTMADRILSMRSELRARLEALKTPGTWNHITD-QIGM 359 (412)
T ss_dssp ---HHHHH--TTTSSCCSHHHHHHHHHH--HSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCHHHHH-CCSS
T ss_pred ---HHHHh--cccCCCChHHHHHHHHHH--cCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCeeEEcC-CCce
Confidence 00001 111111112222222222 2110 23678888899999999999999875 3444321 1111
Q ss_pred EEE-ecCCHHHHHHHHHHcCceeeeecCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 478 VKV-KCADAHAIASAAYKIEMNLRVVDSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 478 ~~~-~~~~~~~v~~~L~~~GI~~~~~~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
+.+ ..+ ...+.+.|.++||.+.. .+|++++. .|++|+++++++|.+
T Consensus 360 ~~~~~~~-~~~~~~~l~~~gv~v~~----~~Ris~~~-~~~~~i~~~~~~l~~ 406 (412)
T 1ajs_A 360 FSFTGLN-PKQVEYLINQKHIYLLP----SGRINMCG-LTTKNLDYVATSIHE 406 (412)
T ss_dssp EEECCCC-HHHHHHHHHTTCEECCT----TSEEEGGG-CCTTTHHHHHHHHHH
T ss_pred EEEeCCC-HHHHHHHHHhCCEEecC----CcEEEeee-CCHHHHHHHHHHHHH
Confidence 222 222 45555666678998864 36999984 489999999999874
|
| >1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase, pyridoxal 5'-phosphate, monovalent cation binding site; HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2 | Back alignment and structure |
|---|
Probab=99.36 E-value=4.8e-11 Score=139.71 Aligned_cols=276 Identities=15% Similarity=0.115 Sum_probs=165.6
Q ss_pred HHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhh-hcCCCCE---EEEcCCCC-hhHHHHHHHhhcCCCeEEEEe-
Q 001989 213 LLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNI-QKGKKKT---FIIASNCH-PQTIDICITRADGFDIKVVVS- 286 (985)
Q Consensus 213 i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~-~~~~g~~---Vlv~~~~H-~s~~~~~~~~a~~~gi~v~~v- 286 (985)
..++++.+|+++|.+ ++.+++|||.+.+.++.+... ...+||+ ||++ ..| +.+...+.. .|.+++.+
T Consensus 78 ~~~l~~~la~~~~~~--~v~~t~ggt~A~~~al~~~~~~~~~~Gd~~~~viv~-~~~~~~~~~~~~~----~g~~~~~~~ 150 (467)
T 1ax4_A 78 YYDLKDKAKELFNYD--YIIPAHQGRGAENILFPVLLKYKQKEGKAKNPVFIS-NFHFDTTAAHVEL----NGCKAINIV 150 (467)
T ss_dssp HHHHHHHHHHHHCCC--EEEEESSHHHHHHHHHHHHHHHHHHTTCCSSCEEEE-SSCCHHHHHHHHH----TTCEEEECB
T ss_pred HHHHHHHHHHHcCCC--cEEEcCCcHHHHHHHHHHHHHhhccCCCccceEEEe-ccccchhhHHHhc----cCCceeccc
Confidence 345788999999975 588889999887777655421 0015787 8888 555 666666543 35555543
Q ss_pred -----------------Cchhhhc-cC----CCEeEEEEEcC-CCC-eee---ccHHHHHHHHHhCCcEEEEEecCccc-
Q 001989 287 -----------------DLKDIDY-KS----GDVCGVLVQYP-GTE-GEV---LDYGDFIKNAHANGVKVVMATDLLAL- 338 (985)
Q Consensus 287 -----------------~~~~l~~-l~----~~t~~V~v~~p-n~~-G~v---~di~~I~~~a~~~galliV~a~~~~l- 338 (985)
|+++|++ +. ++|++|++.+| |.+ |.+ +++++|+++|+++|+++++|. ....
T Consensus 151 ~~~~~~~~~~~~~~~~~d~~~le~~i~~~~~~~~~~vi~~~~~np~gG~~~~~~~l~~i~~la~~~gi~li~De-~~~~~ 229 (467)
T 1ax4_A 151 TEKAFDSETYDDWKGDFDIKKLKENIAQHGADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDS-ARFCE 229 (467)
T ss_dssp CGGGGCTTSCCTTTTCBCHHHHHHHHHHHCGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEEC-TTHHH
T ss_pred ccccccccccCCcccccCHHHHHHHHHhcCCCCeeEEEEeccccCCCccCCChhHHHHHHHHHHHcCCEEEEEc-hhhhh
Confidence 2345555 54 37999999987 677 776 468899999999999999953 2222
Q ss_pred ----------cCCC-CCCcc------cceEEEecC-ccccccCCCCCCcEEEEEEc-h-hhHhcCCCceeeeeecCCCCc
Q 001989 339 ----------TILK-PPGEL------GADIVVGSA-QRFGVPMGYGGPHAAFLATS-Q-EYKRMMPGRIVGVSIDSSGKP 398 (985)
Q Consensus 339 ----------g~l~-~~~~~------GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~-~-~~~~~lp~~~vG~t~d~~g~~ 398 (985)
+... +..++ ++|+++.+. |.++.|. .|+++.+ + ++.+.+......+ .+
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~~g~~~------Gg~~~~~d~~~l~~~~~~~~~~~----~~-- 297 (467)
T 1ax4_A 230 NAYFIKARDPKYKNATIKEVIFDMYKYADALTMSAKKDPLLNI------GGLVAIRDNEEIFTLARQRCVPM----EG-- 297 (467)
T ss_dssp HHHHHHHHCGGGTTCCHHHHHHHHGGGCSEEEEETTSTTCCSS------CEEEEESSCHHHHHHHHHHHHHH----TC--
T ss_pred cchhccccccccCCCchhhhhhhhccccceEEEeccccCCCCc------ceEEEeCCHHHHHHHHHhhcccc----cc--
Confidence 2111 11222 489988887 7665431 2778777 5 6665431000000 00
Q ss_pred ceeeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCCCcceE
Q 001989 399 ALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDTV 478 (985)
Q Consensus 399 ~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~~~~~~ 478 (985)
. ...++.+. ....++.+++ ..+.. ++..++..++.+++++.|++.| +++..+....-+
T Consensus 298 -----~--------~~~~~~~~---~~~~a~~~~l--~~~~~---~~~~~~~~~~~~~l~~~L~~~~-~~~~~~~~~~~~ 355 (467)
T 1ax4_A 298 -----F--------VTYGGLAG---RDMAAMVQGL--EEGTE---EEYLHYRIGQVKYLGDRLREAG-IPIQYPTGGHAV 355 (467)
T ss_dssp -----S--------TTTTTCCH---HHHHHHHHHH--HHTTC---HHHHHHHHHHHHHHHHHHHHTT-CCBCSSCCSSEE
T ss_pred -----c--------cccCCccc---hHHHHHHHHH--HHhhh---hhHHHHHHHHHHHHHHHHHhCC-CCcccCCCceEE
Confidence 0 01111111 1122222222 22211 1233334467788999998765 766532222223
Q ss_pred EEe-------cC--C--HHHHHHHH-HHcCceeeee-----------------cCCeEEEEecc-CCCHHHHHHHHHHHh
Q 001989 479 KVK-------CA--D--AHAIASAA-YKIEMNLRVV-----------------DSNTVTASFDE-TTTLEDVDKLFIVFA 528 (985)
Q Consensus 479 ~~~-------~~--~--~~~v~~~L-~~~GI~~~~~-----------------~~~~lris~t~-~~t~edId~li~aL~ 528 (985)
.+. .+ + ..++.++| .++||.+... ..+.+|+|+.. .+|++|||+++++|.
T Consensus 356 ~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~v~~~g~~~~~~~~~~g~~~~~~~~~iRls~~~~~~t~e~i~~~~~~l~ 435 (467)
T 1ax4_A 356 FVDCKKLVPQIPGDQFPAQAVINALYLESGVRAVEIGSFLLGRDPATGEQKHADMEFMRLTIARRVYTNDHMDYIADALI 435 (467)
T ss_dssp EEESTTTCTTSCGGGCHHHHHHHHHHHHHCEECEEESHHHHCBCTTTCSBCCCSCCEEEEECCTTSSCHHHHHHHHHHHH
T ss_pred EEehhhhccccccCCCCHHHHHHHHHHhcCceeeecCccccccccccccccccccceEEEecccccCCHHHHHHHHHHHH
Confidence 334 32 2 67899999 8889987541 02689999984 589999999999998
Q ss_pred CC
Q 001989 529 GG 530 (985)
Q Consensus 529 ~~ 530 (985)
..
T Consensus 436 ~~ 437 (467)
T 1ax4_A 436 GL 437 (467)
T ss_dssp TT
T ss_pred HH
Confidence 64
|
| >3fsl_A Aromatic-amino-acid aminotransferase; tyrosine aminotransferase, pyridoxal phosphate, internal ALD schiff base, amino-acid biosynthesis; HET: PLR; 2.35A {Escherichia coli k-12} SCOP: c.67.1.1 PDB: 3tat_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=5.2e-11 Score=136.05 Aligned_cols=274 Identities=11% Similarity=0.007 Sum_probs=163.6
Q ss_pred HHHHHHHHhcCC------CCc--ceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEe
Q 001989 215 NFQTMIADLTGL------PMS--NASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVS 286 (985)
Q Consensus 215 e~q~~ia~L~g~------~~~--~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v 286 (985)
++++.+|++++. ++. ++.+++|+|.+++.++...... ++||+|+++...|+++...++. .|.+++.+
T Consensus 74 ~lr~~la~~~~~~~~~~~~~~~~~i~~t~g~~~a~~~~~~~~~~~-~~gd~vl~~~p~~~~~~~~~~~----~g~~~~~~ 148 (397)
T 3fsl_A 74 CYRHAIAPLLFGADHPVLKQQRVATIQTLGGSGALKVGADFLKRY-FPESGVWVSDPTWENHVAIFAG----AGFEVSTY 148 (397)
T ss_dssp HHHHHHHHHHHCTTCHHHHTTCEEEEEESHHHHHHHHHHHHHHHH-CTTCCEEEESSCCHHHHHHHHH----TTCCEEEE
T ss_pred HHHHHHHHHHhcCCcccccccceEEEEcCCcHHHHHHHHHHHHhc-CCCCeEEEeCCCchhHHHHHHH----cCCceEEE
Confidence 456677777643 455 7889999998887764211111 3889999999999999888754 47777776
Q ss_pred Cc----------hhhhc-cC---CCEeEEEEEcC-CCCeee---ccHHHHHHHHHhCCcEEEEEecCccccCCCC-----
Q 001989 287 DL----------KDIDY-KS---GDVCGVLVQYP-GTEGEV---LDYGDFIKNAHANGVKVVMATDLLALTILKP----- 343 (985)
Q Consensus 287 ~~----------~~l~~-l~---~~t~~V~v~~p-n~~G~v---~di~~I~~~a~~~galliV~a~~~~lg~l~~----- 343 (985)
+. +++++ +. ++++++++.+| |.+|.+ +++++|+++|+++|+++++|. ..+......
T Consensus 149 ~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De-~~~~~~~~~~~~~~ 227 (397)
T 3fsl_A 149 PWYDEATNGVRFNDLLATLKTLQAGSIVLLHPCCHNPTGADLTNDQWDAVIEILKARELIPFLDI-AYQGFGAGMEEDAY 227 (397)
T ss_dssp CCEETTTTEECHHHHHHHHTTCCTTCEEEECSSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEE-SCTTSSSCTTGGGH
T ss_pred eeeeccCCcCcHHHHHHHHHhCCCCCEEEEeCCCCCCCCcCCCHHHHHHHHHHHHhCCEEEEEec-CchhhccCcccccH
Confidence 54 34555 54 67888888887 789988 567799999999999999953 322211110
Q ss_pred -----CCcccceEEEecC-ccccccCCCCCCcEEEEEE---chhhHhcCCCceeeeeecCCCCcceeeeccccccccccc
Q 001989 344 -----PGELGADIVVGSA-QRFGVPMGYGGPHAAFLAT---SQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRD 414 (985)
Q Consensus 344 -----~~~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~---~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre 414 (985)
+...+-+++++|. |.++.| |-.+|++.+ ++++++.+-.. + .+.. |
T Consensus 228 ~~~~~~~~~~~~i~~~S~SK~~~~~----G~riG~~~~~~~~~~~~~~~~~~-----------------~---~~~~-~- 281 (397)
T 3fsl_A 228 AIRAIASAGLPALVSNSFSKIFSLY----GERVGGLSVMCEDAEAAGRVLGQ-----------------L---KATV-R- 281 (397)
T ss_dssp HHHHHHHTTCCEEEEEECTTTTTCG----GGCCEEEEEECSSHHHHHHHHHH-----------------H---HHHH-H-
T ss_pred HHHHHHhcCCCEEEEecccccccCc----CCCeeEEEEecCCHHHHHHHHHH-----------------H---HHHH-H-
Confidence 0123456778886 777532 234688764 23333322000 0 0000 0
Q ss_pred ccCCCccchhHHHHHHHHHH-HHH--hCcchHHHHHHHHHHHHHHHHHHHhcCC---CeEEcCCCCcceEEE-ecCCHHH
Q 001989 415 KATSNICTAQALLANMAAMY-AVY--HGPEGLKTIAQRVHGLAGTFALGLKKLG---TVEVQGLPFFDTVKV-KCADAHA 487 (985)
Q Consensus 415 ~atsni~t~~~l~a~~aa~~-l~~--~g~~Gl~~i~~~~~~~a~~l~~~L~~~g---~~~~~~~~~~~~~~~-~~~~~~~ 487 (985)
..+++. +.....+..+.+- ..+ ...+.++++.++..++.+++.+.|++++ ++++..+ ...-+.+ ..+ ...
T Consensus 282 ~~~~~~-~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~ 358 (397)
T 3fsl_A 282 RNYSSP-PNFGAQVVAAVLNDEALKASWLKEVEEMRTRILAMRQELVKVLSTEMPERNFDYLLN-QRGMFSYTGLS-AAQ 358 (397)
T ss_dssp TTTSSC-CSHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCCTHHHH-CCSSEEECCCC-HHH
T ss_pred hccCCC-CHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceeecC-CceEEEecCCC-HHH
Confidence 011111 1111111111110 000 0134577888889999999999998873 2543311 1111222 222 566
Q ss_pred HHHHHHHcCceeeeecCCeEEEEeccCCCHHHHHHHHHHHh
Q 001989 488 IASAAYKIEMNLRVVDSNTVTASFDETTTLEDVDKLFIVFA 528 (985)
Q Consensus 488 v~~~L~~~GI~~~~~~~~~lris~t~~~t~edId~li~aL~ 528 (985)
+.+.|.++||.+.. .+ |+++... |++||++++++|.
T Consensus 359 ~~~~l~~~gi~v~~--g~--Ris~~~~-~~~~i~~~~~~l~ 394 (397)
T 3fsl_A 359 VDRLREEFGVYLIA--SG--RMCVAGL-NTANVQRVAKAFA 394 (397)
T ss_dssp HHHHHHTTCEECCT--TC--EEEGGGC-CTTTHHHHHHHHH
T ss_pred HHHHHHhCCEEECC--CC--eEEEEec-CHhhHHHHHHHHH
Confidence 77778888998864 22 8898754 4577999999886
|
| >1yaa_A Aspartate aminotransferase; HET: PLP; 2.05A {Saccharomyces cerevisiae} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.34 E-value=1.4e-11 Score=141.82 Aligned_cols=270 Identities=12% Similarity=0.027 Sum_probs=161.9
Q ss_pred HHHHHHHHHhc-C-----CCCcceee--ccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEE
Q 001989 214 LNFQTMIADLT-G-----LPMSNASL--LDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVV 285 (985)
Q Consensus 214 ~e~q~~ia~L~-g-----~~~~~~sl--~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~ 285 (985)
.++++.+|+++ + .++.++.+ +.|+|.+++.+....... ++||+|+++...|+.+...++ ..|.+++.
T Consensus 76 ~~lr~~ia~~~~~~~~~~~~~~~i~~~~t~g~~~a~~~~~~~~~~~-~~gd~Vl~~~p~~~~~~~~~~----~~g~~~~~ 150 (412)
T 1yaa_A 76 PSLTSNAAKIIFGTQSDALQEDRVISVQSLSGTGALHISAKFFSKF-FPDKLVYLSKPTWANHMAIFE----NQGLKTAT 150 (412)
T ss_dssp HHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHH-CTTCCEEEEESCCTTHHHHHH----TTTCCEEE
T ss_pred HHHHHHHHHHHhcCCCCCCCcceEEEEeccchHhHHHHHHHHHHHh-CCCCEEEEeCCCCccHHHHHH----HcCceEEE
Confidence 35667777777 3 14567888 899998888764222211 278999999999999888765 34666666
Q ss_pred eCc----------hhhhc-cCC---CEeEEEEEcC-CCCeeec---cHHHHHHHHHhCCcEEEEEecCccccCCC-----
Q 001989 286 SDL----------KDIDY-KSG---DVCGVLVQYP-GTEGEVL---DYGDFIKNAHANGVKVVMATDLLALTILK----- 342 (985)
Q Consensus 286 v~~----------~~l~~-l~~---~t~~V~v~~p-n~~G~v~---di~~I~~~a~~~galliV~a~~~~lg~l~----- 342 (985)
++. +++++ +++ .++++++.+| |.+|.+. ++++|+++|+++|+++++|.-...+..-.
T Consensus 151 v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~p~nPtG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~ 230 (412)
T 1yaa_A 151 YPYWANETKSLDLNGFLNAIQKAPEGSIFVLHSCAHNPTGLDPTSEQWVQIVDAIASKNHIALFDTAYQGFATGDLDKDA 230 (412)
T ss_dssp EECEETTTTEECHHHHHHHHHHSCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTSSSCHHHHT
T ss_pred EeeecCCCCccCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecccccccCCcccchh
Confidence 544 34544 432 2445555787 7799885 57789999999999999953111221100
Q ss_pred -CC---Ccccc----eEEEecC-ccccccCCCCCCcEEEEE--E-----chh----hHhcCCCceeeeeecCCCCcceee
Q 001989 343 -PP---GELGA----DIVVGSA-QRFGVPMGYGGPHAAFLA--T-----SQE----YKRMMPGRIVGVSIDSSGKPALRV 402 (985)
Q Consensus 343 -~~---~~~Ga----Di~v~s~-k~lg~P~~~GGP~~G~l~--~-----~~~----~~~~lp~~~vG~t~d~~g~~~~~l 402 (985)
+. ..++. +|+++|. |.|+.| |-.+|+++ + +++ +++++.
T Consensus 231 ~~~~~~~~~~~~~~~~i~~~s~sK~~~~~----GlriG~~~~~~~~~~~~~~~~~~l~~~l~------------------ 288 (412)
T 1yaa_A 231 YAVRLGVEKLSTVSPVFVCQSFAKNAGMY----GERVGCFHLALTKQAQNKTIKPAVTSQLA------------------ 288 (412)
T ss_dssp HHHHHHHHHTTTTCCEEEEEECTTTSCCG----GGCEEEEEEECCSCTTHHHHHHHHHHHHH------------------
T ss_pred HHHHHHHhcCCCCcceEEEeccCCCCCCc----CCcceEEEEEecCCCCCHHHHHHHHHHHH------------------
Confidence 00 12343 5677776 766421 12268888 6 444 443320
Q ss_pred ecccccccccccccCCCcc-chhHHHHHHHHHHHHHhC-----cchHHHHHHHHHHHHHHHHHHHhcCC---CeEEcCCC
Q 001989 403 AMQTREQHIRRDKATSNIC-TAQALLANMAAMYAVYHG-----PEGLKTIAQRVHGLAGTFALGLKKLG---TVEVQGLP 473 (985)
Q Consensus 403 ~l~tre~~irre~atsni~-t~~~l~a~~aa~~l~~~g-----~~Gl~~i~~~~~~~a~~l~~~L~~~g---~~~~~~~~ 473 (985)
...+ . .+.+ +.....+..+++ .... .+.++++.++..++.+++.+.|+++| ++++..+
T Consensus 289 -------~~~~--~-~~~~~~~~~~~a~~~~l--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~- 355 (412)
T 1yaa_A 289 -------KIIR--S-EVSNPPAYGAKIVAKLL--ETPELTEQWHKDMVTMSSRITKMRHALRDHLVKLGTPGNWDHIVN- 355 (412)
T ss_dssp -------HHHH--T-TTSSCCHHHHHHHHHHH--HSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCTHHHH-
T ss_pred -------HHHh--h-ccCCCChHHHHHHHHHh--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCeeeecc-
Confidence 0001 1 1111 112222222222 2110 24678888899999999999998875 2444321
Q ss_pred CcceEEE-ecCCHHHHHHHHHHcCceeeeecCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 474 FFDTVKV-KCADAHAIASAAYKIEMNLRVVDSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 474 ~~~~~~~-~~~~~~~v~~~L~~~GI~~~~~~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
...-+.+ .. ....+.+.|.++||.+.. .+|++++. .|++|+++++++|+.
T Consensus 356 ~~~~~~~~~~-~~~~~~~~l~~~gi~v~~----~~Ris~~~-~~~~~i~~~~~~l~~ 406 (412)
T 1yaa_A 356 QCGMFSFTGL-TPQMVKRLEETHAVYLVA----SGRASIAG-LNQGNVEYVAKAIDE 406 (412)
T ss_dssp CCSSEEECCC-CHHHHHHHHHHHCEECCT----TSEEEGGG-CCTTTHHHHHHHHHH
T ss_pred CceEEEeeCC-CHHHHHHHHHhCCEEecc----CcEEEEcc-CCHhHHHHHHHHHHH
Confidence 1111222 22 256675556678998864 57999985 589999999999874
|
| >3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyrid phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=5.3e-11 Score=138.28 Aligned_cols=277 Identities=14% Similarity=0.106 Sum_probs=166.2
Q ss_pred HHHHHHHHHHHHhcCCCC-cceeeccchHHHHHHHHHHh-hhhcCCCCEEE-EcCCCChhHHHHHHHhhcC-------C-
Q 001989 211 ESLLNFQTMIADLTGLPM-SNASLLDEGTAAAEAMAMCN-NIQKGKKKTFI-IASNCHPQTIDICITRADG-------F- 279 (985)
Q Consensus 211 ~~i~e~q~~ia~L~g~~~-~~~sl~~~~ta~~ea~~~a~-~~~~~~g~~Vl-v~~~~H~s~~~~~~~~a~~-------~- 279 (985)
+...++++.++++++... .++.+++||+.++++++.+. .+. ++++|| .+...|..+...+...... +
T Consensus 86 ~~~~~l~~~la~~~~~~~~~~v~~~~ggsea~~~al~~~~~~~--~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~ 163 (439)
T 3dxv_A 86 APAVTLAERLLASFPGEGTHKIWFGHSGSDANEAAYRAIVKAT--GRSGVIAFAGAYHGCTVGSMAFSGHSVQADAAKAD 163 (439)
T ss_dssp HHHHHHHHHHHHTTTCTTTEEEEEESSHHHHHHHHHHHHHHHH--SCCEEEEETTCCCCSSHHHHCC-------------
T ss_pred HHHHHHHHHHHHhCCCCCCCEEEEeCCHHHHHHHHHHHHHHHh--CCCEEEEECCCCCCCcHHHHhhcCCCchhhccccC
Confidence 445567789999997655 57889999999888877543 233 455665 4556777666554210000 0
Q ss_pred --CeEEEEeC-------------chhhhc-c----CCCEeEEEEEcC-CCCeeecc----HHHHHHHHHhCCcEEEEEec
Q 001989 280 --DIKVVVSD-------------LKDIDY-K----SGDVCGVLVQYP-GTEGEVLD----YGDFIKNAHANGVKVVMATD 334 (985)
Q Consensus 280 --gi~v~~v~-------------~~~l~~-l----~~~t~~V~v~~p-n~~G~v~d----i~~I~~~a~~~galliV~a~ 334 (985)
...+..++ +++|++ + .+++++|++..+ |..|.+.+ +++|.++|+++|+++++| +
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~D-E 242 (439)
T 3dxv_A 164 GLILLPYPDPYRPYRNDPTGDAILTLLTEKLAAVPAGSIGAAFIEPIQSDGGLIVPPDGFLRKFADICRAHGILVVCD-E 242 (439)
T ss_dssp CEEEECCCCSSSCBTTBTTSHHHHHHHHHHHHTSCTTCEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEE-C
T ss_pred CCCCCcEEcCCCcccccccHHHHHHHHHHHHHhcCCCCEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEe-c
Confidence 00112222 345665 6 567888887765 56888888 999999999999999995 3
Q ss_pred Ccc-ccCCCCC---Cc--ccceEEEecCccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeeccccc
Q 001989 335 LLA-LTILKPP---GE--LGADIVVGSAQRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTRE 408 (985)
Q Consensus 335 ~~~-lg~l~~~---~~--~GaDi~v~s~k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre 408 (985)
.++ ++..... .. ...|++. -+|.|++ |-.+|++++++++++.+....
T Consensus 243 ~~~g~g~~g~~~~~~~~~~~~di~s-~sK~~~~-----G~riG~~~~~~~~~~~~~~~~--------------------- 295 (439)
T 3dxv_A 243 VKVGLARSGRLHCFEHEGFVPDILV-LGKGLGG-----GLPLSAVIAPAEILDCASAFA--------------------- 295 (439)
T ss_dssp TTTCTTTTSSSSGGGGTTCCCSEEE-ECGGGGT-----TSCCEEEEEEHHHHTSCSSSS---------------------
T ss_pred cccCCCcCchhhHHHhcCCCCCEEE-EcchhcC-----CcceEEEEECHHHHhhhcCCC---------------------
Confidence 333 3211111 12 2357762 2488862 334689999998887662110
Q ss_pred ccccccccCCCccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcC----CCeEEc-CCCCcceEEEec-
Q 001989 409 QHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKL----GTVEVQ-GLPFFDTVKVKC- 482 (985)
Q Consensus 409 ~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~----g~~~~~-~~~~~~~~~~~~- 482 (985)
...| + .++.+..+..+++ ..+.. +++.++..++.+++++.|+++ +.+... ....+-.+.+..
T Consensus 296 -----~~~t-~-~~~~~~~aa~aal--~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~ 363 (439)
T 3dxv_A 296 -----MQTL-H-GNPISAAAGLAVL--ETIDR---DDLPAMAERKGRLLRDGLSELAKRHPLIGDIRGRGLACGMELVCD 363 (439)
T ss_dssp -----CCTT-T-TCHHHHHHHHHHH--HHHHH---TTHHHHHHHHHHHHHHHHHHHHHHCTTEEEEEEETTEEEEEEEEE
T ss_pred -----cCCC-c-ccHHHHHHHHHHH--HHHHh---cCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEEEEEEEEEEEecC
Confidence 0111 1 1112222222222 32222 345566667777777777653 222222 111111222210
Q ss_pred -----CC---HHHHHHHHHHcCceeeeec--CCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 483 -----AD---AHAIASAAYKIEMNLRVVD--SNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 483 -----~~---~~~v~~~L~~~GI~~~~~~--~~~lris~t~~~t~edId~li~aL~~ 529 (985)
+. ..++.+.|.++||.+.... ++.+|++++..+|++|+++++++|.+
T Consensus 364 ~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~ 420 (439)
T 3dxv_A 364 RQSREPARAETAKLIYRAYQLGLVVYYVGMNGNVLEFTPPLTITETDIHKALDLLDR 420 (439)
T ss_dssp TTTTEECHHHHHHHHHHHHHHTEECEEESTTSCEEEECCCTTCCHHHHHHHHHHHHH
T ss_pred ccccCCCHHHHHHHHHHHHHCCcEEeecCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 22 6788999999999887653 48899999999999999999999974
|
| >3k7y_A Aspartate aminotransferase; aminotrans pyridoxal phosphate; HET: PLP; 2.80A {Plasmodium falciparum} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.33 E-value=1.3e-11 Score=141.98 Aligned_cols=299 Identities=12% Similarity=0.049 Sum_probs=169.1
Q ss_pred hhhHHHHHHHHHHHHHHHhCCC--cc--c-eecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCC
Q 001989 627 AQGYQEMFNNLGEWLCTITGFD--SF--S-LQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCG 701 (985)
Q Consensus 627 ~~G~~~~~~e~~~~la~l~G~~--~~--~-~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G 701 (985)
.+|..++.+.+.+++....+.. .. . ++..+|++|...++.++.. ..+ |+|+++++.+..+....+..|
T Consensus 71 ~~G~~~lr~aia~~~~~~~~~~~~~~~i~i~~t~G~~~al~~~~~~l~~------~~~-d~Vlv~~P~y~~~~~~~~~~g 143 (405)
T 3k7y_A 71 GNGTEDFSTLTQNLIFGNNSKYIEDKKICTIQCIGGTGAIFVLLEFLKM------LNV-ETLYVTNPPYINHVNMIESRG 143 (405)
T ss_dssp TSSCHHHHHHHHHHHHCSSCTTTTTTCEEEEEEEHHHHHHHHHHHHHHT------TTC-CEEEEESSCCHHHHHHHHTTT
T ss_pred CCCcHHHHHHHHHHHcCCCCccccccceEEEEcCchHHHHHHHHHHHHh------cCC-CEEEEeCCCCHhHHHHHHHcC
Confidence 4576655555555543322221 12 2 3444455555433333321 126 999999997777777788999
Q ss_pred cEEEEEcC-CC-CCCCCHHHHHHHHHhcCCCEEEEEEEcC--CCccccc--cCHHHHHHHHHHcCCEEEEEccccc-ccc
Q 001989 702 MKIVSVGT-DA-KGNINIEELRKAAEANRDNLSTLMVTYP--STHGVYE--EGIDEICKIIHDNGGQVYMDGANMN-AQV 774 (985)
Q Consensus 702 ~~vv~v~~-d~-~g~iD~e~L~~~i~~~~~~t~~Vvv~~p--n~~G~i~--~di~eI~~la~~~galliVD~a~~~-~~~ 774 (985)
++++.+|+ ++ ++.+|+++|++++++. +++++|+++.| |++|.+. ..+++|.++|+++|++++.|.++.. ..+
T Consensus 144 ~~~~~v~~~~~~~~~~d~~~l~~~l~~~-~~~~~i~l~~~~~NPTG~~~s~~~~~~l~~~~~~~~~~vi~De~Y~~l~~~ 222 (405)
T 3k7y_A 144 FNLKYINFFDYNLIDINYDLFLNDLRNI-PNGSSVILQISCYNPCSVNIEEKYFDEIIEIVLHKKHVIIFDIAYQGFGHT 222 (405)
T ss_dssp CEEEEECCEETTTTEECHHHHHHHHHHS-CSSCEEEECCSSCTTTCCCCCHHHHHHHHHHHHHHCCEEEEEESCTTTSSS
T ss_pred CeEEEEeccccccCCcCHHHHHHHHHhC-CCCeEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCeEEEEecCcccccCC
Confidence 99999998 43 4789999999999742 35667777654 6899885 2578899999999999999988731 111
Q ss_pred CCCC---C----CccCC-cEEEeCCcccccccCCCCCCceEEEEE---cccccCcCCCCccccCCCCCCCCCCCCCCCCC
Q 001989 775 GLTS---P----GYIGA-DVCHLNLHKTFCIPHGGGGPGMGPIGV---KKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIA 843 (985)
Q Consensus 775 ~l~~---p----g~~g~-Di~~~s~hK~l~~p~g~GGPg~G~i~~---~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~ 843 (985)
+... + ...+. -+++.|+.|+|++| |.++|++++ ++++...+...+... .....++.+
T Consensus 223 ~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~l~----GlRiG~~~~~~~~~~~~~~~~~~l~~~--------~~~~~~~~~ 290 (405)
T 3k7y_A 223 NLEEDVLLIRKFEEKNIAFSVCQSFSKNMSLY----GERAGALHIVCKNQEEKKIVFNNLCFI--------VRKFYSSPV 290 (405)
T ss_dssp STTGGGHHHHHHHTTTCCEEEEEECTTTSCCT----TTTEEEEEEECSSHHHHHHHHHHHHHH--------HHTTTSSCC
T ss_pred CcccchHHHHHHHhcCCcEEEEeeCCccCCCc----cccceEEEEEeCCHHHHHHHHHHHHHH--------HhcccCCCc
Confidence 1000 0 01122 25677888988764 899999864 233322110000000 000111111
Q ss_pred CcchhhhHHHHHHHHHHHH--hc---HHHHHHHHHHHHHHHHHHHHHhh----c-cCC--eeecCCCCceeeEEEEEecC
Q 001989 844 AAPWGSALILPISYTYIAM--MG---SKGLTEASKIAILNANYMAKRLE----K-HYP--ILFRGVNGTVAHEFIVDLRG 911 (985)
Q Consensus 844 s~~~g~~~~~~~a~a~l~~--lg---~eGl~~~~~~~~~~a~~l~~~L~----~-g~~--l~~~~~~~~~~~~~iv~~~~ 911 (985)
..++. ++..++.. ++ .+.++++.++..++++++.+.|+ + +.. +.+..+.+.++ +.+.++
T Consensus 291 --~~~q~----~~~~~l~~~~l~~~~~~~l~~~~~~~~~~R~~l~~~L~~~~~~~g~~~~~~~~~p~gg~f--~~~~l~- 361 (405)
T 3k7y_A 291 --IHTNR----ILCQLLNNQNLKLNWIKELSQLSQRITNNRILFFNKLETYQKKYNLNYDWNVYKKQRGLF--SFVPLL- 361 (405)
T ss_dssp --HHHHH----HHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGTCCCCGGGGSSCCSSE--EECGGG-
T ss_pred --HHHHH----HHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCccccCCceEE--EecCCC-
Confidence 11221 11122221 11 12344555567888899999998 6 321 22222333333 122222
Q ss_pred ccccCCCCHHHHHHHHHHCCCccCCCCCCCCCEEEEeccCCCCHHHHHHHHccCChhHHHHh
Q 001989 912 LKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHR 973 (985)
Q Consensus 912 ~~~~~g~~~~~v~~~L~~~Gi~~~~~~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~ 973 (985)
. +.+++|.++||.+.. +. ||++.- .+.++|++ ++++|++++.+
T Consensus 362 --------~-~~~~~L~~~gV~v~p------~~-Ris~a~-~~~~~i~~--~~~~i~~~~~~ 404 (405)
T 3k7y_A 362 --------A-KIAEHLKTHHIYIIN------NG-RINVSG-ITKNNVDY--IADKICLSLSQ 404 (405)
T ss_dssp --------G-GGTTTTTTTTEECCT------TS-EEEGGG-CCTTHHHH--HHHHHHHHHHC
T ss_pred --------H-HHHHHHHHCCEeecC------CC-eEEEec-cCHHHHHH--HHHHHHHHHhh
Confidence 1 345667667887632 22 888753 45688999 77888887764
|
| >1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A* 1szu_A* 1szs_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=2e-10 Score=132.51 Aligned_cols=276 Identities=12% Similarity=0.102 Sum_probs=163.4
Q ss_pred HHHHHHHHHHHhcCCCC-cceeeccchHHHHHHHHH-HhhhhcCCCCEEEEcC-CCChhHHHHHHHhh-c-----CC---
Q 001989 212 SLLNFQTMIADLTGLPM-SNASLLDEGTAAAEAMAM-CNNIQKGKKKTFIIAS-NCHPQTIDICITRA-D-----GF--- 279 (985)
Q Consensus 212 ~i~e~q~~ia~L~g~~~-~~~sl~~~~ta~~ea~~~-a~~~~~~~g~~Vlv~~-~~H~s~~~~~~~~a-~-----~~--- 279 (985)
...++++.+|++++.+. .++.+++|++.++++++. +..+. +++ +|++.+ ..|......+.... + .+
T Consensus 85 ~~~~l~~~la~~~~~~~~~~v~~~~g~~~a~~~~~~~a~~~~-~~~-~vi~~~p~y~~~~~~~~~~~g~~~~~~~~~~~~ 162 (426)
T 1sff_A 85 PYLELCEIMNQKVPGDFAKKTLLVTTGSEAVENAVKIARAAT-KRS-GTIAFSGAYHGRTHYTLALTGKVNPYSAGMGLM 162 (426)
T ss_dssp HHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHHHHHH-TCC-EEEEETTCCCCSSHHHHHHSSCCTTTTTTSCCC
T ss_pred HHHHHHHHHHHhCCcccccEEEEeCchHHHHHHHHHHHHHhh-CCC-eEEEECCCcCCCchHhhhhcCCccccccccCCC
Confidence 34567789999993233 678899999988887765 32233 244 777665 55555554443210 0 11
Q ss_pred --CeEEEEeC-----------chhhhc-cC-----CCEeEEEEE-cCCCCeeecc----HHHHHHHHHhCCcEEEEEecC
Q 001989 280 --DIKVVVSD-----------LKDIDY-KS-----GDVCGVLVQ-YPGTEGEVLD----YGDFIKNAHANGVKVVMATDL 335 (985)
Q Consensus 280 --gi~v~~v~-----------~~~l~~-l~-----~~t~~V~v~-~pn~~G~v~d----i~~I~~~a~~~galliV~a~~ 335 (985)
++..+.++ +++|++ +. +++++|+++ .++.+|.+.+ +++|.++|+++|+++++| +.
T Consensus 163 ~~~v~~v~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~v~~~p~~~ntG~~~~~~~~l~~l~~l~~~~~~~li~D-e~ 241 (426)
T 1sff_A 163 PGHVYRALYPCPLHGISEDDAIASIHRIFKNDAAPEDIAAIVIEPVQGEGGFYASSPAFMQRLRALCDEHGIMLIAD-EV 241 (426)
T ss_dssp CSSEEEECCCBGGGTBCHHHHHHHHHHHHHHTCCGGGEEEEEECSBCTTTTSCBCCHHHHHHHHHHHHHHTCEEEEE-CT
T ss_pred CCCcEEeCCCccccccchHHHHHHHHHHHHhccCCCceEEEEEecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEe-ch
Confidence 13222222 234554 53 578888775 3444997777 999999999999999995 33
Q ss_pred cc-ccCCCCC---Ccc--cceEEEecCccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccc
Q 001989 336 LA-LTILKPP---GEL--GADIVVGSAQRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQ 409 (985)
Q Consensus 336 ~~-lg~l~~~---~~~--GaDi~v~s~k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~ 409 (985)
.+ ++..... ..+ .+|++.. +|.|+. |--+|++++++++++.+... .
T Consensus 242 ~~~~~~~g~~~~~~~~~~~~di~s~-sK~~~~-----GlriG~~~~~~~~~~~l~~~----------~------------ 293 (426)
T 1sff_A 242 QSGAGRTGTLFAMEQMGVAPDLTTF-AKSIAG-----GFPLAGVTGRAEVMDAVAPG----------G------------ 293 (426)
T ss_dssp TTTTTTTSSSSGGGGTTSCCSEEEE-CGGGGT-----SSCCEEEEEEHHHHTTSCTT----------S------------
T ss_pred hhccCcccchhhhhhcCCCCCEEEE-cccccC-----CCceEEEEEcHHHHhhhccC----------C------------
Confidence 33 3211111 122 3677633 387752 22358999999887766210 0
Q ss_pred cccccccCCCccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcC----CCeEEcCCCCcceEEEec---
Q 001989 410 HIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKL----GTVEVQGLPFFDTVKVKC--- 482 (985)
Q Consensus 410 ~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~----g~~~~~~~~~~~~~~~~~--- 482 (985)
...|.+. ++....+..+++ .++..+ ++.++..++.++++++|+++ +.+.... +...-+.+.+
T Consensus 294 ----~~~~~~~-~~~~~~a~~aal--~~~~~~---~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~-~~g~~~~~~~~~~ 362 (426)
T 1sff_A 294 ----LGGTYAG-NPIACVAALEVL--KVFEQE---NLLQKANDLGQKLKDGLLAIAEKHPEIGDVR-GLGAMIAIELFED 362 (426)
T ss_dssp ----BCCSSSS-CHHHHHHHHHHH--HHHHHT---THHHHHHHHHHHHHHHHHHHHHTCTTEEEEE-EETTEEEEEEBGG
T ss_pred ----cCcCCCC-CHHHHHHHHHHH--HHHHhc---CHHHHHHHHHHHHHHHHHHHHHhCCCeEEEE-EEEEEEEEEEecC
Confidence 0111111 112222333333 333222 35567777888888888763 2122211 1111233333
Q ss_pred -----CC---HHHHHHHHHHcCceeeeec--CCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 483 -----AD---AHAIASAAYKIEMNLRVVD--SNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 483 -----~~---~~~v~~~L~~~GI~~~~~~--~~~lris~t~~~t~edId~li~aL~~ 529 (985)
+. ..++.++|.++||.+.... ++.+|++++..+|++|+++++++|.+
T Consensus 363 ~~~~~~~~~~~~~l~~~l~~~gi~v~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~ 419 (426)
T 1sff_A 363 GDHNKPDAKLTAEIVARARDKGLILLSCGPYYNVLRILVPLTIEDAQIRQGLEIISQ 419 (426)
T ss_dssp GCTTSBCHHHHHHHHHHHHHTTEECEEESTTSCEEEECCCTTCCHHHHHHHHHHHHH
T ss_pred ccccCCChHHHHHHHHHHHHCCcEEecCCCCCCEEEEECCccCCHHHHHHHHHHHHH
Confidence 22 6789999999999887643 58899999999999999999999974
|
| >4f4e_A Aromatic-amino-acid aminotransferase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: LLP; 1.80A {Burkholderia pseudomallei} PDB: 4eff_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=7.9e-11 Score=136.09 Aligned_cols=271 Identities=11% Similarity=0.032 Sum_probs=163.1
Q ss_pred HHHHHHHHhcCC------CCc--ceeeccchHHHHHHHH--HHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEE
Q 001989 215 NFQTMIADLTGL------PMS--NASLLDEGTAAAEAMA--MCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVV 284 (985)
Q Consensus 215 e~q~~ia~L~g~------~~~--~~sl~~~~ta~~ea~~--~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~ 284 (985)
++++.++++++. ++. ++.++.|+|.+++.++ +++ . ++||+|++++..|+++...++. .|.+++
T Consensus 96 ~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~t~al~~~~~~~~~-~--~~gd~Vlv~~p~~~~~~~~~~~----~g~~~~ 168 (420)
T 4f4e_A 96 AYDASVQKLLLGDDSPLIAAGRVVTAQALGGTGALKIGADFLRT-L--NPKAKVAISDPSWENHRALFDM----AGFEVV 168 (420)
T ss_dssp HHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHH-H--CTTCCEEEEESCCHHHHHHHHH----TTCCEE
T ss_pred HHHHHHHHHhcCCCccccccCceEEEECCccHHHHHHHHHHHHH-h--CCCCEEEEeCCCcHhHHHHHHH----cCCeEE
Confidence 455666666633 344 6888899998887763 232 2 3889999999999999888754 466666
Q ss_pred EeCc----------hhhhc-cC---CCEeEEEEEcC-CCCeee---ccHHHHHHHHHhCCcEEEEEecCccccCCCC---
Q 001989 285 VSDL----------KDIDY-KS---GDVCGVLVQYP-GTEGEV---LDYGDFIKNAHANGVKVVMATDLLALTILKP--- 343 (985)
Q Consensus 285 ~v~~----------~~l~~-l~---~~t~~V~v~~p-n~~G~v---~di~~I~~~a~~~galliV~a~~~~lg~l~~--- 343 (985)
.++. +++++ +. ++++++++.+| |.+|.+ +++++|+++|+++|+++++|. ..+......
T Consensus 169 ~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~i~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De-~y~~~~~~~~~~ 247 (420)
T 4f4e_A 169 AYPYYDAKTNGVNFDGMLAALNGYEPGTIVVLHACCHNPTGVDLNDAQWAQVVEVVKARRLVPFLDI-AYQGFGESIEAD 247 (420)
T ss_dssp EEECEETTTTEECHHHHHHHHTTCCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEE-SCTTSSSCTTGG
T ss_pred EeeeeccccCccCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEcc-ccccccCCcchh
Confidence 6654 34555 54 67888888887 789988 457899999999999999953 222111110
Q ss_pred -------CCcccceEEEecC-ccccccCCCCCCcEEEEEE---chhhHhcCCCceeeeeecCCCCcceeeeccccccccc
Q 001989 344 -------PGELGADIVVGSA-QRFGVPMGYGGPHAAFLAT---SQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIR 412 (985)
Q Consensus 344 -------~~~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~---~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~ir 412 (985)
++..+-+|+++|. |.|+.| |-.+|++++ ++++++.+-.. + +...
T Consensus 248 ~~~~~~~~~~~~~~i~~~S~SK~~~~~----G~RiG~~~~~~~~~~~~~~~~~~-----------------~----~~~~ 302 (420)
T 4f4e_A 248 AAAVRLFAAANLNVFVSSSFSKSFSLY----GERVGALSIITDSKDEAARVLSQ-----------------L----KRVI 302 (420)
T ss_dssp GHHHHHHHHTTCCEEEEEECTTTTTCG----GGCEEEEEEECSSHHHHHHHHHH-----------------H----HHHH
T ss_pred hHHHHHHHhcCCCEEEEEeCCccCcCc----CCCcEEEEEEcCCHHHHHHHHHH-----------------H----HHHH
Confidence 1134567888887 877532 223688764 33433322000 0 0000
Q ss_pred ccccCCCccchhHHHHHHHHHHHHHh-----CcchHHHHHHHHHHHHHHHHHHHhcCC---CeEEcCCCCcceEEE-ecC
Q 001989 413 RDKATSNICTAQALLANMAAMYAVYH-----GPEGLKTIAQRVHGLAGTFALGLKKLG---TVEVQGLPFFDTVKV-KCA 483 (985)
Q Consensus 413 re~atsni~t~~~l~a~~aa~~l~~~-----g~~Gl~~i~~~~~~~a~~l~~~L~~~g---~~~~~~~~~~~~~~~-~~~ 483 (985)
| ..+++.. .+...+++.++... ..+.++++.++..++.+++.+.|++++ ++++.. +...-+.+ ..+
T Consensus 303 ~-~~~~~~~---~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~-~~~g~~~~~~~~ 377 (420)
T 4f4e_A 303 R-TNYSNPP---THGGAIVAAVLASPELRASWVQELGEMRDRIRAMRNGLVERLKAAGIERDFSFIN-AQRGMFSYSGLT 377 (420)
T ss_dssp H-TTTSSCC---SHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCTHHH-HSCSSEEECCCC
T ss_pred h-cccCCCC---HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceeEC-CCccEEEEeCCC
Confidence 0 1122221 11111121111110 123467888889999999999999872 244331 11111222 222
Q ss_pred CHHHHHHHHHHcCceeeeecCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 484 DAHAIASAAYKIEMNLRVVDSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 484 ~~~~v~~~L~~~GI~~~~~~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
...+.+.|.++||.+.. + .|+++... |+++|++++++|++
T Consensus 378 -~~~~~~~l~~~gI~v~~---~-~Ris~~~~-~~~~i~~~~~~l~~ 417 (420)
T 4f4e_A 378 -SAQVDRLREEFGIYAVS---T-GRICVAAL-NTRNLDVVANAIAA 417 (420)
T ss_dssp -HHHHHHHHHHHCEECCT---T-SEEEGGGC-CTTTHHHHHHHHHH
T ss_pred -HHHHHHHHHhCCEEecC---C-CeEEEecC-CHHHHHHHHHHHHH
Confidence 56677778888998864 2 39998743 56679999998863
|
| >3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural genomics consortium, pyridoxal phosphate; HET: PLP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.31 E-value=6.7e-11 Score=139.98 Aligned_cols=276 Identities=12% Similarity=0.119 Sum_probs=168.5
Q ss_pred hhHHHHHHHHHHHHHHhc-CC--CCcceeeccchHHHHHHHHHHhhhhcCCC----CEEEEcCCCChhHHHHHHHhhcCC
Q 001989 207 QGRLESLLNFQTMIADLT-GL--PMSNASLLDEGTAAAEAMAMCNNIQKGKK----KTFIIASNCHPQTIDICITRADGF 279 (985)
Q Consensus 207 qg~l~~i~e~q~~ia~L~-g~--~~~~~sl~~~~ta~~ea~~~a~~~~~~~g----~~Vlv~~~~H~s~~~~~~~~a~~~ 279 (985)
+|..+.-.+..+.+.+.. |. ++.++.+++|++.++..++.++. ++| |+|+++.-.|+.+...++. .
T Consensus 129 ~G~~~lr~~ia~~~~~~~gG~~~~~~~i~~t~G~~~ai~~~~~~l~---~~gd~~~d~Vlv~~p~y~~~~~~~~~----~ 201 (498)
T 3ihj_A 129 QGVNCIREDVAAYITRRDGGVPADPDNIYLTTGASDGISTILKILV---SGGGKSRTGVMIPIPQYPLYSAVISE----L 201 (498)
T ss_dssp CSCHHHHHHHHHHHHHHTTTCCCCGGGEEEESSHHHHHHHHHHHHC---CCCGGGSEEEEEEESCCTHHHHHHHH----T
T ss_pred CCHHHHHHHHHHHHHHhcCCCCCCcccEEEcCCHHHHHHHHHHHHc---CCCCCCCCEEEEeCCCchhHHHHHHH----c
Confidence 444343333344444444 34 56789999999987776665542 244 5999999999999988754 4
Q ss_pred CeEEEEeCc----------hhhhc-cCC-----CEeEEEEEcC-CCCeeec---cHHHHHHHHHhCCcEEEEEecCcccc
Q 001989 280 DIKVVVSDL----------KDIDY-KSG-----DVCGVLVQYP-GTEGEVL---DYGDFIKNAHANGVKVVMATDLLALT 339 (985)
Q Consensus 280 gi~v~~v~~----------~~l~~-l~~-----~t~~V~v~~p-n~~G~v~---di~~I~~~a~~~galliV~a~~~~lg 339 (985)
|.+++.++. ++|++ +.+ ++++|++.+| |++|.+. ++++|+++|+++|+++++| +..+..
T Consensus 202 g~~~v~~~~~~~~~~~~d~~~le~~l~~~~~~~~~k~i~l~np~NPTG~v~s~~~l~~i~~la~~~~~~li~D-e~y~~~ 280 (498)
T 3ihj_A 202 DAIQVNYYLDEENCWALNVNELRRAVQEAKDHCDPKVLCIINPGNPTGQVQSRKCIEDVIHFAWEEKLFLLAD-EVYQDN 280 (498)
T ss_dssp TCEEEEEECBGGGTTBCCHHHHHHHHHHHTTTSEEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEE-CTTTTC
T ss_pred CCEEEEeeccccccCCCCHHHHHHHHHhhhccCCCeEEEEECCCCCCCCcCCHHHHHHHHHHHHHcCcEEEEE-cCcccc
Confidence 777776643 34554 443 5899999998 7899884 5788999999999999995 343332
Q ss_pred CCCC---CC-------cccc-------eEEEecC-ccc-cccCCCCCCcEEEEEE---chhhHhcCCCceeeeeecCCCC
Q 001989 340 ILKP---PG-------ELGA-------DIVVGSA-QRF-GVPMGYGGPHAAFLAT---SQEYKRMMPGRIVGVSIDSSGK 397 (985)
Q Consensus 340 ~l~~---~~-------~~Ga-------Di~v~s~-k~l-g~P~~~GGP~~G~l~~---~~~~~~~lp~~~vG~t~d~~g~ 397 (985)
.... .. +++. -|+++|. |.| |.| |+ .+|++.+ ++++++.+-
T Consensus 281 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~S~SK~~~G~~-G~---R~G~~~~~~~~~~l~~~l~------------- 343 (498)
T 3ihj_A 281 VYSPDCRFHSFKKVLYEMGPEYSSNVELASFHSTSKGYMGEC-GY---RGGYMEVINLHPEIKGQLV------------- 343 (498)
T ss_dssp BCCTTCCCCCHHHHHHHTCHHHHTTCCEEEEEESSSSTTCCS-SS---CCEEEEEESCCHHHHHHHH-------------
T ss_pred ccCCCCCcCCHHHHHHHhcccccCceeEEEEeccccccccCc-cc---ceEEEEEecCCHHHHHHHH-------------
Confidence 2211 10 1121 1567776 888 323 33 3478874 556655430
Q ss_pred cceeeecccccccccccccCCCccchhHHHHHHHHHHHHHhCc------------chHHHHHHHHHHHHHHHHHHHhcCC
Q 001989 398 PALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGP------------EGLKTIAQRVHGLAGTFALGLKKLG 465 (985)
Q Consensus 398 ~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~------------~Gl~~i~~~~~~~a~~l~~~L~~~g 465 (985)
.. ...+.|++......++ ..+.. +-++++.++..++++++.+.|+++.
T Consensus 344 ---------------~~-~~~~~~~~~~~q~a~~----~~l~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~~ 403 (498)
T 3ihj_A 344 ---------------KL-LSVRLCPPVSGQAAMD----IVVNPPVAGEESFEQFSREKESVLGNLAKKAKLTEDLFNQVP 403 (498)
T ss_dssp ---------------HH-HHHSCCCCHHHHHHHH----HHTCCCCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTST
T ss_pred ---------------HH-HhccCCCCHHHHHHHH----HHhcCCccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 00 0122343332222222 12211 1135666778899999999999983
Q ss_pred CeEEcCC--CCcceEEEecC----------C--HHH--HHHHHHHcCceeeee-------cCCeEEEEeccCCCHHHHHH
Q 001989 466 TVEVQGL--PFFDTVKVKCA----------D--AHA--IASAAYKIEMNLRVV-------DSNTVTASFDETTTLEDVDK 522 (985)
Q Consensus 466 ~~~~~~~--~~~~~~~~~~~----------~--~~~--v~~~L~~~GI~~~~~-------~~~~lris~t~~~t~edId~ 522 (985)
|+++..+ ..+.-+.+..+ + ..+ +.+.|.++||.+... ..+.+|+++. .+++++++
T Consensus 404 g~~~~~p~gg~~~~~~l~~p~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pG~~f~~~~~~~~~Ris~~--~~~e~l~~ 481 (498)
T 3ihj_A 404 GIHCNPLQGAMYAFPRIFIPAKAVEAAQAHQMAPDMFYCMKLLEETGICVVPGSGFGQREGTYHFRMTIL--PPVEKLKT 481 (498)
T ss_dssp TEECCCCCBSSEECCEECCCHHHHHHHHHTTSCHHHHHHHHHHHHHCBCCEEGGGTCCCTTCCBEEEECC--SCHHHHHH
T ss_pred CcEecCCCeEEEEEEeccCchhhhHHHHhcCCCcHHHHHHHHHHHCCEEEEeCcccCCCCCCCEEEEEeC--CCHHHHHH
Confidence 3887632 12111123322 1 233 355666789987542 1358999994 79999999
Q ss_pred HHHHHhC
Q 001989 523 LFIVFAG 529 (985)
Q Consensus 523 li~aL~~ 529 (985)
+++.|..
T Consensus 482 ~i~~L~~ 488 (498)
T 3ihj_A 482 VLQKVKD 488 (498)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998874
|
| >3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase, transferase-transferase inhibitor complex; HET: PL8; 1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A* 3lv2_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=1.6e-10 Score=135.33 Aligned_cols=283 Identities=14% Similarity=0.095 Sum_probs=168.3
Q ss_pred HHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHH-hhh--hc--CCCCEEEEcC-CCChhHHHHHHHhh---------c
Q 001989 213 LLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMC-NNI--QK--GKKKTFIIAS-NCHPQTIDICITRA---------D 277 (985)
Q Consensus 213 i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a-~~~--~~--~~g~~Vlv~~-~~H~s~~~~~~~~a---------~ 277 (985)
..++++.++++++.+...+.+++|||.++++++.+ +.+ .+ .++++||+.+ ..|......+..-. .
T Consensus 120 ~~~L~e~la~~~~~~~~~v~~~~sGseA~~~Alk~a~~~~~~~g~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~ 199 (457)
T 3tfu_A 120 AARLAKLLVDITPAGLDTVFFSDSGSVSVEVAAKMALQYWRGRGLPGKRRLMTWRGGYHGDTFLAMSICDPHGGMHSLWT 199 (457)
T ss_dssp HHHHHHHHHHHSSTTEEEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHTTSCCC--------
T ss_pred HHHHHHHHHHhCCCCcCEEEEeCcHHHHHHHHHHHHHHHHHhcCCCCCceEEEEcCCcCCccHHhhcccCCccccccccc
Confidence 34678899999987777898999999998887743 322 01 1345777654 56655544432100 0
Q ss_pred --CCCeEEEEe--------Cchhhhc-cC---CCEeEEEEEc-C-CCCeeecc----HHHHHHHHHhCCcEEEEEecCc-
Q 001989 278 --GFDIKVVVS--------DLKDIDY-KS---GDVCGVLVQY-P-GTEGEVLD----YGDFIKNAHANGVKVVMATDLL- 336 (985)
Q Consensus 278 --~~gi~v~~v--------~~~~l~~-l~---~~t~~V~v~~-p-n~~G~v~d----i~~I~~~a~~~galliV~a~~~- 336 (985)
..++..... ++++|++ ++ +++++|++.. + |..|.+.+ +++|.++|+++|+++++| +..
T Consensus 200 ~~~~~~~~~~~p~~~~~~~d~~~le~~l~~~~~~~aavi~ep~~~~~~G~~~~~~~~l~~l~~l~~~~gillI~D-Ev~~ 278 (457)
T 3tfu_A 200 DVLAAQVFAPQVPRDYDPAYSAAFEAQLAQHAGELAAVVVEPVVQGAGGMRFHDPRYLHDLRDICRRYEVLLIFD-EIAT 278 (457)
T ss_dssp --CCCCEEECCCCSSCCHHHHHHHHHHHHHHGGGEEEEEECSSEECTTTCEECCTHHHHHHHHHHHHHTCEEEEE-CTTT
T ss_pred CCCCCceEecCCCcccCHHHHHHHHHHHHhCCCCEEEEEEeCCCcCCCCcccCCHHHHHHHHHHHHHcCCEEEEE-cCcc
Confidence 112333222 2345665 55 6788888776 5 67888765 999999999999999995 332
Q ss_pred cccCCCCC---Ccc--cceEEEecCccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccc
Q 001989 337 ALTILKPP---GEL--GADIVVGSAQRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHI 411 (985)
Q Consensus 337 ~lg~l~~~---~~~--GaDi~v~s~k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~i 411 (985)
.+|-.... ..+ ..|+++. +|.|++ |...+|++.+++++.+.+... ..+. +.
T Consensus 279 g~gr~G~~~a~~~~~~~pdiit~-sK~l~g----G~~~lG~v~~~~~i~~~~~~~-------~~~~--~~---------- 334 (457)
T 3tfu_A 279 GFGRTGALFAADHAGVSPDIMCV-GKALTG----GYLSLAATLCTADVAHTISAG-------AAGA--LM---------- 334 (457)
T ss_dssp TTTTTSSSSTHHHHTCCCSEEEE-CGGGGT----TSSCCEEEEEEHHHHHHHHHS-------SSCS--CC----------
T ss_pred CCccccchhHhHhcCCCceEEEE-ChhhhC----CCcceEEEEEcHHHHHHhhcc-------CCCc--ee----------
Confidence 23321111 112 3577633 487642 324578888999887765100 0000 00
Q ss_pred cccccCCCccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCC---CeEEc-CCCCcceEEEecCC-HH
Q 001989 412 RRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLG---TVEVQ-GLPFFDTVKVKCAD-AH 486 (985)
Q Consensus 412 rre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g---~~~~~-~~~~~~~~~~~~~~-~~ 486 (985)
...|.+. ++.+..+..++ +..+..+ ++.++..++.++++++|+++. ++..+ ....+-.+.+..+. +.
T Consensus 335 --~~~t~~~-n~~a~aaa~aa--L~~~~~~---~~~~~~~~~~~~l~~~L~~l~~~~~v~~vr~~G~~~~i~l~~~~~~~ 406 (457)
T 3tfu_A 335 --HGPTFMA-NPLACAVSVAS--VELLLGQ---DWRTRITELAAGLTAGLDTARALPAVTDVRVCGAIGVIECDRPVDLA 406 (457)
T ss_dssp --CCCTTTT-CHHHHHHHHHH--HHHHHTS---CHHHHHHHHHHHHHHHHGGGGGSTTEEEEEECSSCEEEEESSCCCHH
T ss_pred --EecCCCc-CHHHHHHHHHH--HHHHhhh---HHHHHHHHHHHHHHHHHHHHhcCCCeeeeecCCeEEEEEECCcccHH
Confidence 0111111 11112222222 2333233 456667778889999888752 23322 11122223332222 78
Q ss_pred HHHHHHHHcCceeeeecCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 487 AIASAAYKIEMNLRVVDSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 487 ~v~~~L~~~GI~~~~~~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
++.+.|.++||.++.. .+.+|+++....|+||||+++++|++
T Consensus 407 ~~~~~l~~~Gv~v~~~-~~~lRi~p~~~~t~eei~~~l~~L~~ 448 (457)
T 3tfu_A 407 VATPAALDRGVWLRPF-RNLVYAMPPYICTPAEITQITSAMVE 448 (457)
T ss_dssp HHHHHHHHTTEECCCB-TTEEEECCCTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCeEEEec-CCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 9999999999988753 57899999999999999999999974
|
| >2ay1_A Aroat, aromatic amino acid aminotransferase; HET: PLP AHC; 2.20A {Paracoccus denitrificans} SCOP: c.67.1.1 PDB: 1ay5_A* 1ay4_A* 1ay8_A* 2ay2_A* 2ay3_A* 2ay4_A* 2ay5_A* 2ay6_A* 2ay7_A* 2ay8_A* 2ay9_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=5.1e-12 Score=144.43 Aligned_cols=272 Identities=10% Similarity=0.081 Sum_probs=165.9
Q ss_pred HHHHHHHHhc-CC--CCcceee--ccchHHHHHHHHHHhh-hhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc
Q 001989 215 NFQTMIADLT-GL--PMSNASL--LDEGTAAAEAMAMCNN-IQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL 288 (985)
Q Consensus 215 e~q~~ia~L~-g~--~~~~~sl--~~~~ta~~ea~~~a~~-~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~ 288 (985)
++++.+|+++ |. ++.++.+ +.|+|.++++++.++. +. +||+|+++...|+.+...++. .|.+++.++.
T Consensus 73 ~lr~~la~~~~~~~~~~~~v~~~~~~g~~~a~~~~~~~~~~~~--~gd~vl~~~p~~~~~~~~~~~----~g~~~~~~~~ 146 (394)
T 2ay1_A 73 EFQKAMGELILGDGLKSETTATLATVGGTGALRQALELARMAN--PDLRVFVSDPTWPNHVSIMNF----MGLPVQTYRY 146 (394)
T ss_dssp HHHHHHHHHHHGGGCCGGGEEEEEEEHHHHHHHHHHHHHHHHC--TTCCEEEEESCCHHHHHHHHH----HTCCEEEEEC
T ss_pred HHHHHHHHHHhCCCCCcccEEEEecCCchhHHHHHHHHHHhcC--CCCEEEEcCCCChhHHHHHHH----cCCceEEEec
Confidence 4667777776 55 5677887 8999988888775443 23 789999999999998887754 3555555543
Q ss_pred ----------hhhhc-cCC---CEeEEEEEcC-CCCeeec---cHHHHHHHHHhCCcEEEEEecCccccCCC------CC
Q 001989 289 ----------KDIDY-KSG---DVCGVLVQYP-GTEGEVL---DYGDFIKNAHANGVKVVMATDLLALTILK------PP 344 (985)
Q Consensus 289 ----------~~l~~-l~~---~t~~V~v~~p-n~~G~v~---di~~I~~~a~~~galliV~a~~~~lg~l~------~~ 344 (985)
+++++ +++ +++++++.+| |.+|.+. ++++|+++|+++|+++++|. ..+..... +.
T Consensus 147 ~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De-~~~~~~~~~~~~~~~~ 225 (394)
T 2ay1_A 147 FDAETRGVDFEGMKADLAAAKKGDMVLLHGCCHNPTGANLTLDQWAEIASILEKTGALPLIDL-AYQGFGDGLEEDAAGT 225 (394)
T ss_dssp EETTTTEECHHHHHHHHHTCCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEE-CCTTSSSCHHHHHHHH
T ss_pred ccccCCccCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEec-CccccccCcccchHHH
Confidence 34554 432 3666777787 7899886 46789999999999999953 22211110 00
Q ss_pred ---Ccccce-EEEecC-ccccccCCCCCCcEEEEEE---chhhHhcCCCceeeeeecCCCCcceeeeccccccccccccc
Q 001989 345 ---GELGAD-IVVGSA-QRFGVPMGYGGPHAAFLAT---SQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKA 416 (985)
Q Consensus 345 ---~~~GaD-i~v~s~-k~lg~P~~~GGP~~G~l~~---~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~a 416 (985)
..++.| ++++|. |.|+.| |-.+|++++ ++++++.+-..+ ....+ .
T Consensus 226 ~~~~~~~~~~i~~~s~sK~~~~~----G~riG~~~~~~~~~~~~~~l~~~~---------------------~~~~~--~ 278 (394)
T 2ay1_A 226 RLIASRIPEVLIAASCSKNFGIY----RERTGCLLALCADAATRELAQGAM---------------------AFLNR--Q 278 (394)
T ss_dssp HHHHHHCSSEEEEEECTTTTTCG----GGCEEEEEEECSSHHHHHHHHHHH---------------------HHHHH--T
T ss_pred HHHhhcCCCEEEEEeccCCCcCc----CCccceEEEEeCCHHHHHHHHHHH---------------------HHHHh--h
Confidence 122433 567776 766422 234699988 665543321000 00001 1
Q ss_pred CCCccchhHHHHHHHHHHHHHh-----CcchHHHHHHHHHHHHHHHHHHHhcCC---CeEEcCCCCcceEE-EecCCHHH
Q 001989 417 TSNICTAQALLANMAAMYAVYH-----GPEGLKTIAQRVHGLAGTFALGLKKLG---TVEVQGLPFFDTVK-VKCADAHA 487 (985)
Q Consensus 417 tsni~t~~~l~a~~aa~~l~~~-----g~~Gl~~i~~~~~~~a~~l~~~L~~~g---~~~~~~~~~~~~~~-~~~~~~~~ 487 (985)
+...++.....+..+++ ... -.+.++++.++..++.+++.+.|+++| ++++..+ ...-+. +..+ ...
T Consensus 279 ~~~~~~~~~~~a~~~~l--~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~-~~g~~~~~~~~-~~~ 354 (394)
T 2ay1_A 279 TYSFPPFHGAKIVSTVL--TTPELRADWMAELEAVRSGMLRLREQLAGELRDLSGSDRFGFVAE-HRGMFSRLGAT-PEQ 354 (394)
T ss_dssp TTSSCCCHHHHHHHHHH--HSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTTHHHH-CCSSEEECCCC-HHH
T ss_pred hcCCCChHHHHHHHHHh--cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCeeEEcC-CceEEEeeCCC-HHH
Confidence 11111112222222222 111 124678888888999999999998764 2443311 111122 2222 556
Q ss_pred HHHHHHHcCceeeeecCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 488 IASAAYKIEMNLRVVDSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 488 v~~~L~~~GI~~~~~~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
+.+.|.++||.+.. .+|++++ .+|++|+++++++|.+
T Consensus 355 ~~~~l~~~gi~v~~----~~Ris~~-~~~~~~i~~~~~~l~~ 391 (394)
T 2ay1_A 355 VKRIKEEFGIYMVG----DSRINIA-GLNDNTIPILARAIIE 391 (394)
T ss_dssp HHHHHHHHCEECCT----TCEEEGG-GCCTTTHHHHHHHHHH
T ss_pred HHHHHHhCCEEecC----CCeEEee-cCCHhhHHHHHHHHHH
Confidence 77777788998864 3799988 5799999999999863
|
| >1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase; HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP: c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A* 1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A* 1d7r_A* 1d7v_A* 1z3z_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=9.4e-11 Score=135.89 Aligned_cols=278 Identities=13% Similarity=0.130 Sum_probs=166.0
Q ss_pred HHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHh-hhhcCCCCEEEEcC-CCChhHHHHHHHh---------hcCCCe
Q 001989 213 LLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCN-NIQKGKKKTFIIAS-NCHPQTIDICITR---------ADGFDI 281 (985)
Q Consensus 213 i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~-~~~~~~g~~Vlv~~-~~H~s~~~~~~~~---------a~~~gi 281 (985)
..++.+.+++++|.+..++.+++||+.++++++.+. ... ++++||+.+ ..|+.....+... ....|+
T Consensus 87 ~~~l~~~la~~~~~~~~~v~~~~gg~ea~~~a~~~~~~~~--~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~ 164 (433)
T 1zod_A 87 VVDLATRLANITPPGLDRALLLSTGAESNEAAIRMAKLVT--GKYEIVGFAQSWHGMTGAAASATYSAGRKGVGPAAVGS 164 (433)
T ss_dssp HHHHHHHHHHHSCTTCCEEEEESCHHHHHHHHHHHHHHHH--TCCEEEEETTCCCCSSHHHHHTCCSSCCSSSCCCCTTE
T ss_pred HHHHHHHHHHhCCCCcCEEEEeCchHHHHHHHHHHHHHhh--CCCeEEEECCCcCCCChhHHhhcCCccccccCCCCCCc
Confidence 345667899999887778999999998888776533 223 467888766 5666655544210 001255
Q ss_pred EEEEeC------------------chhhhc-cC----CCEeEEEEEcC-CCCeeecc----HHHHHHHHHhCCcEEEEEe
Q 001989 282 KVVVSD------------------LKDIDY-KS----GDVCGVLVQYP-GTEGEVLD----YGDFIKNAHANGVKVVMAT 333 (985)
Q Consensus 282 ~v~~v~------------------~~~l~~-l~----~~t~~V~v~~p-n~~G~v~d----i~~I~~~a~~~galliV~a 333 (985)
..+.++ +++|++ ++ +++++|++... |.+|.+.+ +++|.++|+++|+++++|
T Consensus 165 ~~v~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~D- 243 (433)
T 1zod_A 165 FAIPAPFTYRPRFERNGAYDYLAELDYAFDLIDRQSSGNLAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILD- 243 (433)
T ss_dssp EEECCCCTTSCCCEETTEECHHHHHHHHHHHHHHHCCSCEEEEEECSEETTTTCEECCTTHHHHHHHHHHHHTCEEEEE-
T ss_pred eEecCCcccccccCCchhhhHHHHHHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEe-
Confidence 544332 345555 54 56777776432 56897765 999999999999999995
Q ss_pred cCcc-ccCCCCCC-----cccceEEEecCccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccc
Q 001989 334 DLLA-LTILKPPG-----ELGADIVVGSAQRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTR 407 (985)
Q Consensus 334 ~~~~-lg~l~~~~-----~~GaDi~v~s~k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tr 407 (985)
+..+ +|...... ....|++.. +|+|++ |-.+|++++++++++.+.. +. +
T Consensus 244 Ev~~~~g~~g~~~~~~~~~~~~di~s~-sK~~~~-----G~~ig~~~~~~~~~~~~~~----------~~--~------- 298 (433)
T 1zod_A 244 EAQTGVGRTGTMFACQRDGVTPDILTL-SKTLGA-----GLPLAAIVTSAAIEERAHE----------LG--Y------- 298 (433)
T ss_dssp CTTTTTTTTSSSSTHHHHTCCCSEEEE-CHHHHT-----TSSCEEEEECHHHHHHHHH----------TT--C-------
T ss_pred ccccCCCcCchHhHHhhcCCCCCEEEe-cccccC-----CCCeeEEEEhHHHHHhhcc----------CC--C-------
Confidence 3443 44222111 123576533 388863 2346899999888765511 00 0
Q ss_pred cccccccccCCCccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcC----CCeEEc-CCCCcceEEEec
Q 001989 408 EQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKL----GTVEVQ-GLPFFDTVKVKC 482 (985)
Q Consensus 408 e~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~----g~~~~~-~~~~~~~~~~~~ 482 (985)
...+|.+. ++.+..+..+++ ..+..++ +.++..++.++++++|+++ +.+... ....+-.+.+..
T Consensus 299 -----~~~~t~~~-~~~~~~a~~aal--~~~~~~~---~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~g~~~~i~~~~ 367 (433)
T 1zod_A 299 -----LFYTTHVS-DPLPAAVGLRVL--DVVQRDG---LVARANVMGDRLRRGLLDLMERFDCIGDVRGRGLLLGVEIVK 367 (433)
T ss_dssp -----CCCCTTTT-CHHHHHHHHHHH--HHHHHTT---HHHHHHHHHHHHHHHHHHHHHHCTTEEEEEEETTEEEEEEEE
T ss_pred -----CCCCCCCc-CHHHHHHHHHHH--HHHHhCC---HHHHHHHHHHHHHHHHHHHHHhCCCeEEEEEEEEEEEEEEec
Confidence 00022211 111222222332 3322223 4566677788888887764 312222 111121222221
Q ss_pred --------CC-HHHHHHHHHHcCceeeeec--C--CeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 483 --------AD-AHAIASAAYKIEMNLRVVD--S--NTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 483 --------~~-~~~v~~~L~~~GI~~~~~~--~--~~lris~t~~~t~edId~li~aL~~ 529 (985)
.. +.++.+.|.++||.+.... . +.+|++++..+|++||++++++|..
T Consensus 368 ~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~~~lRi~~~~~~t~~~i~~~l~~l~~ 427 (433)
T 1zod_A 368 DRRTKEPADGLGAKITRECMNLGLSMNIVQLPGMGGVFRIAPPLTVSEDEIDLGLSLLGQ 427 (433)
T ss_dssp ETTTTEECTTHHHHHHHHHHHTTEECCEECCTTSCCEEEECCCTTCCHHHHHHHHHHHHH
T ss_pred CccccCCChHHHHHHHHHHHHCCCeEeccCCCCCCCEEEEECCcCCCHHHHHHHHHHHHH
Confidence 12 6789999999999886542 3 7899999999999999999999874
|
| >3meb_A Aspartate aminotransferase; pyridoxal PHOS transferase, structural genomics, seattle structural genomi for infectious disease, ssgcid; HET: PLP; 1.90A {Giardia lamblia} | Back alignment and structure |
|---|
Probab=99.31 E-value=1.1e-10 Score=136.19 Aligned_cols=275 Identities=12% Similarity=0.049 Sum_probs=159.5
Q ss_pred HHHHHHHHHHhc-CCC-----Ccceee--ccchHHHHHHHH--HHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeE
Q 001989 213 LLNFQTMIADLT-GLP-----MSNASL--LDEGTAAAEAMA--MCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIK 282 (985)
Q Consensus 213 i~e~q~~ia~L~-g~~-----~~~~sl--~~~~ta~~ea~~--~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~ 282 (985)
+.++++.+++++ |.+ +.++.+ +.|||.+.+.+. ++. .. +||+|++++..|+.+...++.+++..|.+
T Consensus 96 ~~~lr~~ia~~l~g~~~~~~~~~~i~~~~t~ggt~al~l~~~~~~~-~~--~gd~Vlv~~p~~~~~~~~~~~~~~~~G~~ 172 (448)
T 3meb_A 96 FPLFLEAAQFLMFGKDSKAAQEGRIASCQSLSGTGSLHIGFEFLHL-WM--PKAEFYMPSTTWPNHYGIYDKVFNKLKVP 172 (448)
T ss_dssp CHHHHHHHHHHHHCTTCHHHHTTCEEEEEESHHHHHHHHHHHHHHH-HC--TTCCEEEESSCCTHHHHHHHHHHCTTTSC
T ss_pred hHHHHHHHHHHhcCCCccccCcCcEEEEECCcHHHHHHHHHHHHHH-hC--CCCEEEECCCCCHhHHHHHHhhHHhCCCe
Confidence 345777888887 877 567888 899998776532 222 23 78999999999999988876333346777
Q ss_pred EEEeCc-----------hhhhc-cC---CCEeEEEEEcC-CCCeeecc---HHHHHHHHHhCCcEEEEEecCccccCCC-
Q 001989 283 VVVSDL-----------KDIDY-KS---GDVCGVLVQYP-GTEGEVLD---YGDFIKNAHANGVKVVMATDLLALTILK- 342 (985)
Q Consensus 283 v~~v~~-----------~~l~~-l~---~~t~~V~v~~p-n~~G~v~d---i~~I~~~a~~~galliV~a~~~~lg~l~- 342 (985)
++.++. +++++ +. ++++++++.+| |.+|.+.+ +++|+++|+++|+++++|.-...++.-.
T Consensus 173 v~~~~~~~~~~~~~~d~e~l~~~l~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~l~~~~~~~li~Deay~~~~~~~~ 252 (448)
T 3meb_A 173 YKEYTYLRKDGELEIDFSNTKKDIQSAPEKSIFLFHACAHNPSGIDFTEAQWKELLPIMKEKKHIAFFDSAYQGFATGSF 252 (448)
T ss_dssp CEEECCBCTTSCSSBCHHHHHHHHHHSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTSSSCH
T ss_pred EEEEeccccccCCCcCHHHHHHHHHhCCCCcEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHCCCEEEEecccccccCCCc
Confidence 776654 23333 43 45777777787 78998865 6669999999999999953212222111
Q ss_pred --CC---C---cccce-EEEecC-ccccccCCCCCCcEEEE--EE--------c-h----hhHhcCCCceeeeeecCCCC
Q 001989 343 --PP---G---ELGAD-IVVGSA-QRFGVPMGYGGPHAAFL--AT--------S-Q----EYKRMMPGRIVGVSIDSSGK 397 (985)
Q Consensus 343 --~~---~---~~GaD-i~v~s~-k~lg~P~~~GGP~~G~l--~~--------~-~----~~~~~lp~~~vG~t~d~~g~ 397 (985)
+. . +.+.+ |+++|. |.|+.| |-.+|++ .+ . + ++.+.+
T Consensus 253 ~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~----G~RiG~l~~v~~~~~~~~~~~~~~~~~l~~~l-------------- 314 (448)
T 3meb_A 253 EADAFAVRMFVDAGVEVLVAQSFSKNFGLY----GERIGCLHVVHAGVEGSVEKNKALSAAMVSGM-------------- 314 (448)
T ss_dssp HHHTHHHHHHHHTTCCEEEEEECTTTSCCG----GGCCEEEEEECCCCSSSHHHHHHHHHHHHHHH--------------
T ss_pred ccCchhHHHHhhcCCcEEEEecccccCCCc----cccceeeeeeeccccccccCCHHHHHHHHHHH--------------
Confidence 00 0 12344 557776 766532 2236776 44 3 3 222221
Q ss_pred cceeeecccccccccccccCCCccchhHHHHHHHHHHHHHh-----CcchHHHHHHHHHHHHHHHHHHHhcCCCeEE---
Q 001989 398 PALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYH-----GPEGLKTIAQRVHGLAGTFALGLKKLGTVEV--- 469 (985)
Q Consensus 398 ~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~-----g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~--- 469 (985)
....| ..+++.+ .+...+++..+... -.+.++++.++..++.+++.+.|+++| +.-
T Consensus 315 -----------~~~~~-~~~~~~~---~~~~~a~~~~l~~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~-~~~~~~ 378 (448)
T 3meb_A 315 -----------TLQIR-KTWSMSA---IHGAYIVQVIVHDKRLLQMFYDNVKEMSARIHRMRSLLHASLAKRK-TPGPGS 378 (448)
T ss_dssp -----------HHHHH-TTTSSCC---HHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CCCSTT
T ss_pred -----------HHHHh-cccCCcc---HHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC-CCCcCc
Confidence 00011 1223321 11111111111100 013467888888999999999999885 321
Q ss_pred ---cC--CCCcceEEEecCCHHHHHHHH-HHcCceeeeecCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 470 ---QG--LPFFDTVKVKCADAHAIASAA-YKIEMNLRVVDSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 470 ---~~--~~~~~~~~~~~~~~~~v~~~L-~~~GI~~~~~~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
+. .+...-+.+. .-..++...| .++||.+.. +..|+|+... ++++|++++++|.+
T Consensus 379 ~~~~~~~~~~~g~~~~~-~~~~~~~~~ll~~~gV~v~~---G~gRis~a~~-~~~~i~~~~~~l~~ 439 (448)
T 3meb_A 379 KGTWDHILTAIGMFTFT-GLTPEHVDYLKEKWSIYLVK---AGGRMSMCGL-TESNCDYVAEAIHD 439 (448)
T ss_dssp TCCCTHHHHCCSSEEEC-CCCHHHHHHHHHHHCEEECS---GGGEEEGGGC-CTTTHHHHHHHHHH
T ss_pred ccccceeCCCceEEEec-CCCHHHHHHHHHhCCEEEeC---CCcEEEEecC-CHHHHHHHHHHHHH
Confidence 11 0111113331 1123445555 567998864 2249998644 45569999998874
|
| >3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST genomics, protein structure initiative; HET: PLP; 2.00A {Rhodobacter sphaeroides 2} | Back alignment and structure |
|---|
Probab=99.31 E-value=5.9e-11 Score=139.65 Aligned_cols=285 Identities=14% Similarity=0.133 Sum_probs=167.3
Q ss_pred HHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHH-hhh--hc--CCCCEEEEcC-CCChhHHHHHHHhhc--------
Q 001989 212 SLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMC-NNI--QK--GKKKTFIIAS-NCHPQTIDICITRAD-------- 277 (985)
Q Consensus 212 ~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a-~~~--~~--~~g~~Vlv~~-~~H~s~~~~~~~~a~-------- 277 (985)
...++.++++++++.+...+.+++||+.++++++.+ +.+ .+ .++++||+.+ .-|......+..-..
T Consensus 98 ~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Aik~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~ 177 (476)
T 3i5t_A 98 PAARLAEKIATLTPGDLNRIFFTTGGSTAVDSALRFSEFYNNVLGRPQKKRIIVRYDGYHGSTALTAACTGRTGNWPNFD 177 (476)
T ss_dssp HHHHHHHHHHTTSSTTCCEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHTCCCGGGCTTSC
T ss_pred HHHHHHHHHHhcCCCCcCEEEEeCchHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCcCcCChhhccccCChhhccccC
Confidence 344567889999976666788999999998887753 332 01 1467777655 566665554421000
Q ss_pred --CCCeEEEEeC-----------------chhhhc-cC----CCEeEEEEEcC-CCCeeecc----HHHHHHHHHhCCcE
Q 001989 278 --GFDIKVVVSD-----------------LKDIDY-KS----GDVCGVLVQYP-GTEGEVLD----YGDFIKNAHANGVK 328 (985)
Q Consensus 278 --~~gi~v~~v~-----------------~~~l~~-l~----~~t~~V~v~~p-n~~G~v~d----i~~I~~~a~~~gal 328 (985)
..++.....+ .++|++ +. +++++|++..+ +..|.+.+ +++|.++|+++|++
T Consensus 178 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~aavi~ep~~~~~G~~~~~~~~L~~l~~lc~~~gil 257 (476)
T 3i5t_A 178 IAQDRISFLSSPNPRHAGNRSQEAFLDDLVQEFEDRIESLGPDTIAAFLAEPILASGGVIIPPAGYHARFKAICEKHDIL 257 (476)
T ss_dssp CCCTTEEEECCCCGGGCTTSCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHTTCE
T ss_pred CCCCCcEEeCCCcccccCCCchHHHHHHHHHHHHHHHHhcCCCCEEEEEECCccCCCCcccCCHHHHHHHHHHHHHcCCE
Confidence 1133333222 346665 43 56788877765 56777655 99999999999999
Q ss_pred EEEEecCcc-ccCCCCC---C-ccc--ceEEEecCccccccCCCCC-CcEEEEEEchhhHhcCCCceeeeeecCCCCcce
Q 001989 329 VVMATDLLA-LTILKPP---G-ELG--ADIVVGSAQRFGVPMGYGG-PHAAFLATSQEYKRMMPGRIVGVSIDSSGKPAL 400 (985)
Q Consensus 329 liV~a~~~~-lg~l~~~---~-~~G--aDi~v~s~k~lg~P~~~GG-P~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~ 400 (985)
+|+| +.++ +|-.... . .+| .|+++. +|.|+ || -.+|++.+++++++.+...- ...+.|
T Consensus 258 lI~D-Ev~~g~gr~G~~~~~~~~~~v~pdi~t~-sK~l~-----~G~~plg~v~~~~~i~~~~~~~~-------~~~~~~ 323 (476)
T 3i5t_A 258 YISD-EVVTGFGRCGEWFASEKVFGVVPDIITF-AKGVT-----SGYVPLGGLAISEAVLARISGEN-------AKGSWF 323 (476)
T ss_dssp EEEE-CTTTTTTTTSSSCHHHHTTCCCCSEEEE-CGGGG-----TTSSCCEEEEECHHHHHTTSGGG-------CTTCEE
T ss_pred EEEE-ecccCCccccCceeeecccCCCcchhhh-hhhhc-----CCCcCeEEEEECHHHHHHHhcCC-------cccccc
Confidence 9995 3332 4322211 1 233 477654 48875 23 34678888999888763210 000000
Q ss_pred eeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCC---CeEEc-CCCCcc
Q 001989 401 RVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLG---TVEVQ-GLPFFD 476 (985)
Q Consensus 401 ~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g---~~~~~-~~~~~~ 476 (985)
. ...|.+. .+.+..+..++ +..+.. +++.++..++.+++++.|++++ .+..+ ....+-
T Consensus 324 ~------------~~~t~~~-np~a~aAa~aa--L~~~~~---~~~~~~~~~~~~~l~~~L~~l~~~~~v~~v~~~G~~~ 385 (476)
T 3i5t_A 324 T------------NGYTYSN-QPVACAAALAN--IELMER---EGIVDQAREMADYFAAALASLRDLPGVAETRSVGLVG 385 (476)
T ss_dssp C------------CCCTTTT-CHHHHHHHHHH--HHHHHH---TTHHHHHHHHHHHHHHHHHTTTTSTTEEEEEEETTEE
T ss_pred c------------ccCCCCc-CHHHHHHHHHH--HHHHHh---HHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEecCcee
Confidence 0 0112111 11112222222 233322 3466777788888888888653 12221 111111
Q ss_pred eEEEecC------------CHHHHHHHHHHcCceeeeecCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 477 TVKVKCA------------DAHAIASAAYKIEMNLRVVDSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 477 ~~~~~~~------------~~~~v~~~L~~~GI~~~~~~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
.+.+... .+.++.+.|.++||.+... ++.+|+++....|++|||+++++|.+
T Consensus 386 ~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~-g~~iRi~p~l~~t~e~i~~~l~~l~~ 449 (476)
T 3i5t_A 386 CVQCLLDPTRADGTAEDKAFTLKIDERCFELGLIVRPL-GDLCVISPPLIISRAQIDEMVAIMRQ 449 (476)
T ss_dssp EEEECCC-----CCHHHHHHHHHHHHHHHHTTEECEEE-TTEEEECCCTTCCHHHHHHHHHHHHH
T ss_pred EEEEecCccccccccchhHHHHHHHHHHHHCCCEEEec-CCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 1222211 0457888899999998764 38999999999999999999999985
|
| >2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural genomics, NPPSFA, N project on protein structural and functional analyses; HET: PLP; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.31 E-value=1.4e-10 Score=133.98 Aligned_cols=267 Identities=15% Similarity=0.114 Sum_probs=164.5
Q ss_pred HHHHHHHHHhcCCC-CcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcC-CCChhHHHHHHH------hhcCC---CeE
Q 001989 214 LNFQTMIADLTGLP-MSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIAS-NCHPQTIDICIT------RADGF---DIK 282 (985)
Q Consensus 214 ~e~q~~ia~L~g~~-~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~-~~H~s~~~~~~~------~a~~~---gi~ 282 (985)
.++.+.+++++|.+ +.++.+++||+.+++.++.+.+.. .|++||+.+ ..|+.+...+.. +.... ...
T Consensus 89 ~~l~~~la~~~~~~~~~~v~~~~gg~ea~~~ai~~~~~~--~~~~vi~~~p~yh~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (419)
T 2eo5_A 89 LELAKKLVTYSPGNFQKKVFFSNSGTEAIEASIKVVKNT--GRKYIIAFLGGFHGRTFGSISLTASKAVQRSIVGPFMPG 166 (419)
T ss_dssp HHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHHHTT--SCCEEEEETTCCCCSSHHHHHHCCSCGGGGCSSCCCCTT
T ss_pred HHHHHHHHHhCCCCcCCEEEEeCchHHHHHHHHHHHHHh--hCCcEEEECCCcCCCCHhhHhhcCCccccccccCCCCCC
Confidence 45667899999987 678989999998887766543221 378888877 566666555432 10111 112
Q ss_pred EEEeC------------------------chhhh-c-cC-----CCEeEEEEEcC-CCCeeecc----HHHHHHHHHhCC
Q 001989 283 VVVSD------------------------LKDID-Y-KS-----GDVCGVLVQYP-GTEGEVLD----YGDFIKNAHANG 326 (985)
Q Consensus 283 v~~v~------------------------~~~l~-~-l~-----~~t~~V~v~~p-n~~G~v~d----i~~I~~~a~~~g 326 (985)
++.++ +++|+ + ++ +++++|++... |.+|.+.+ +++|.++|+++|
T Consensus 167 ~~~v~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~vi~~p~~~~tG~~~~~~~~l~~l~~l~~~~~ 246 (419)
T 2eo5_A 167 VIHVPYPNPYRNPWHINGYENPSELVNRVIEFIEDYIFVNLVPPEEVAGIFFEPIQGEGGYVIPPKNFFAELQKLAKKYG 246 (419)
T ss_dssp EEEECCCCSSSCTTCCCTTTCHHHHHHHHHHHHHHTHHHHTCCGGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHHT
T ss_pred CEEECCCccccccccccccccchhhHHHHHHHHHHHHHhhccCCCCEEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcC
Confidence 33332 23676 6 54 46776666433 45898766 999999999999
Q ss_pred cEEEEEecCcc-ccCCCCC---C--cccceEEEecCccccccCCCCC-CcEEEEEEchhhHhcCCCceeeeeecCCCCcc
Q 001989 327 VKVVMATDLLA-LTILKPP---G--ELGADIVVGSAQRFGVPMGYGG-PHAAFLATSQEYKRMMPGRIVGVSIDSSGKPA 399 (985)
Q Consensus 327 alliV~a~~~~-lg~l~~~---~--~~GaDi~v~s~k~lg~P~~~GG-P~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~ 399 (985)
+++++| +..+ +|..... . ....|+++. +|+|++ | -.+|+++++++++ .+ ....
T Consensus 247 ~~li~D-E~~~~~g~~g~~~~~~~~~~~~d~~t~-sK~~~~-----G~~riG~~~~~~~~~-~~-~~~~----------- 306 (419)
T 2eo5_A 247 ILLVDD-EVQMGLGRTGKLFAIENFNTVPDVITL-AKALGG-----GIMPIGATIFRKDLD-FK-PGMH----------- 306 (419)
T ss_dssp CEEEEE-CTTTTTTTTSSSSGGGGGTCCCSEEEE-CGGGGT-----TTSCCEEEEEEGGGC-CC----------------
T ss_pred CEEEEe-ccccCCccCcchhhHHhcCCCCCEEEe-cccccC-----CccceEEEEEchHhh-cC-Cccc-----------
Confidence 999995 3333 4322111 1 224576643 387752 3 3468888888765 54 1000
Q ss_pred eeeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCCCcceEE
Q 001989 400 LRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDTVK 479 (985)
Q Consensus 400 ~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~~~~~~~ 479 (985)
.+|.+.. +.+..+..+++ ..+ +++.++..++.+++.+.|+++. ..+. +...-+.
T Consensus 307 ---------------~~t~~~n-~~~~~aa~aal--~~~-----~~~~~~~~~~~~~l~~~L~~~~-~~~~--~~g~~~~ 360 (419)
T 2eo5_A 307 ---------------SNTFGGN-ALACAIGSKVI--DIV-----KDLLPHVNEIGKIFAEELQGLA-DDVR--GIGLAWG 360 (419)
T ss_dssp -----------------CCCCC-HHHHHHHHHHH--HHH-----HHHHHHHHHHHHHHHHHHTTSS-SEEE--EETTEEE
T ss_pred ---------------CCCCCCC-HHHHHHHHHHH--HHH-----HHHHHHHHHHHHHHHHHHHHhh-hheE--eeeEEEE
Confidence 1121111 11222222332 221 2367788889999999998851 1111 1112234
Q ss_pred Eec-C--C-HHHHHHHHHHcCceeeeecCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 480 VKC-A--D-AHAIASAAYKIEMNLRVVDSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 480 ~~~-~--~-~~~v~~~L~~~GI~~~~~~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
+.+ + . +. +.+.|.++||.+.....+.+|++++..+|++|+++++++|.+
T Consensus 361 i~~~~~~~~~~-~~~~l~~~Gv~v~~~~~~~lRis~~~~~t~e~i~~~l~~l~~ 413 (419)
T 2eo5_A 361 LEYNEKKVRDR-IIGESFKRGLLLLPAGRSAIRVIPPLVISEEEAKQGLDILKK 413 (419)
T ss_dssp EECSCHHHHHH-HHHHHHHTTEECEEETTTEEEECCCTTCCHHHHHHHHHHHHH
T ss_pred EEEecCccHHH-HHHHHHHCCCEEecCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 555 3 2 55 889999999998765568899999999999999999999974
|
| >4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LLP; 1.80A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=99.29 E-value=5.5e-10 Score=130.53 Aligned_cols=275 Identities=13% Similarity=0.121 Sum_probs=157.6
Q ss_pred HHHHHHHHHHhcCCC-CcceeeccchHHHHHHHH-HHhhhhcCCCCEEEEcC-CCChhHHHHHHHhh------cCC----
Q 001989 213 LLNFQTMIADLTGLP-MSNASLLDEGTAAAEAMA-MCNNIQKGKKKTFIIAS-NCHPQTIDICITRA------DGF---- 279 (985)
Q Consensus 213 i~e~q~~ia~L~g~~-~~~~sl~~~~ta~~ea~~-~a~~~~~~~g~~Vlv~~-~~H~s~~~~~~~~a------~~~---- 279 (985)
..++.+.++++++.+ ...+.+++|||.++++++ +++... ++++||+.+ ..|......+..-. ..+
T Consensus 109 ~~~la~~l~~~~~~~~~~~v~~~~sGseA~~~alk~a~~~~--g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~ 186 (453)
T 4ffc_A 109 YVQVAELLNALTPGDHDKRTALFNSGAEAVENAIKVARLAT--GRPAVVAFDNAYHGRTNLTMALTAKSMPYKSQFGPFA 186 (453)
T ss_dssp HHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHHHHHH--CCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTSCSCC
T ss_pred HHHHHHHHHHhCCCCCCcEEEEeCcHHHHHHHHHHHHHHhc--CCCEEEEEcCccCCcchHHHhhcCCCcccccCCCCCC
Confidence 345678899999754 357888999999888877 444333 567787666 45555444432100 001
Q ss_pred -CeEEEEeCc------------------hhhhc-cCCC-EeEEEEEcC-CCCeeecc----HHHHHHHHHhCCcEEEEEe
Q 001989 280 -DIKVVVSDL------------------KDIDY-KSGD-VCGVLVQYP-GTEGEVLD----YGDFIKNAHANGVKVVMAT 333 (985)
Q Consensus 280 -gi~v~~v~~------------------~~l~~-l~~~-t~~V~v~~p-n~~G~v~d----i~~I~~~a~~~galliV~a 333 (985)
++....++. ++|++ ++++ +++|++... +..|.+.+ +++|.++|+++|+++|+|
T Consensus 187 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~i~~~~~aavi~ep~~~~gG~~~~~~~~l~~l~~l~~~~~~llI~D- 265 (453)
T 4ffc_A 187 PEVYRMPASYPLRDEPGLTGEEAARRAISRIETQIGAQSLAAIIIEPIQGEGGFIVPAPGFLATLTAWASENGVVFIAD- 265 (453)
T ss_dssp SSEEEECCCCTTTSCTTCCHHHHHHHHHHHHHHHTCGGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEE-
T ss_pred CCcEEeCCCccccCccccchHHHHHHHHHHHHHhcCCCCEEEEEEcCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEe-
Confidence 333332321 22444 4544 455554433 34577765 999999999999999995
Q ss_pred cCcc-ccCCCCC---Cccc--ceEEEecCccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccc
Q 001989 334 DLLA-LTILKPP---GELG--ADIVVGSAQRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTR 407 (985)
Q Consensus 334 ~~~~-lg~l~~~---~~~G--aDi~v~s~k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tr 407 (985)
+..+ +|..... ..+| .|+++. +|.|++ |-.+|++.+++++++.+....
T Consensus 266 Ev~~g~g~~g~~~a~~~~~~~pdi~t~-sK~~~~-----G~~~G~~~~~~~i~~~~~~~~-------------------- 319 (453)
T 4ffc_A 266 EVQTGFARTGAWFASEHEGIVPDIVTM-AKGIAG-----GMPLSAVTGRAELMDAVYAGG-------------------- 319 (453)
T ss_dssp CTTTTTTTTSSSSTHHHHTCCCSEEEE-CGGGGT-----TSSCEEEEEEHHHHTTSCTTS--------------------
T ss_pred cCccCCCcccccchhhhcCCCcchHhh-hhhhcC-----CcCeEEEEECHHHHhhhcccC--------------------
Confidence 3332 4322111 1123 466654 388853 234678888998887662110
Q ss_pred cccccccccCCCccchhHHHHHHHHH-HHHHhCcchHHHHHHHHHHHHHHHHHHHhcC----CCeEEc-CCCCcceEEEe
Q 001989 408 EQHIRRDKATSNICTAQALLANMAAM-YAVYHGPEGLKTIAQRVHGLAGTFALGLKKL----GTVEVQ-GLPFFDTVKVK 481 (985)
Q Consensus 408 e~~irre~atsni~t~~~l~a~~aa~-~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~----g~~~~~-~~~~~~~~~~~ 481 (985)
...|.+ .+. + +..|++ .+..+..+ ++.++..++.+++++.|+++ +.+..+ +...+-.+.+.
T Consensus 320 ------~~~t~~--~~~-~-~~aaa~aal~~~~~~---~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~ 386 (453)
T 4ffc_A 320 ------LGGTYG--GNP-V-TCAAAVAALGVMREL---DLPARARAIEASVTSRLSALAEEVDIIGEVRGRGAMLAIEIV 386 (453)
T ss_dssp ------SCCSSS--SCH-H-HHHHHHHHHHHHHHT---THHHHHHHHHHHHHHHHHHHHHHCSSEEEEEEETTEEEEEEB
T ss_pred ------cCCCCC--cCH-H-HHHHHHHHHHHhhhh---hHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeceEEEEEEe
Confidence 011111 111 1 122222 12333222 34555556666666666543 323322 11112123232
Q ss_pred c-----CC---HHHHHHHHHHcCceeeeec--CCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 482 C-----AD---AHAIASAAYKIEMNLRVVD--SNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 482 ~-----~~---~~~v~~~L~~~GI~~~~~~--~~~lris~t~~~t~edId~li~aL~~ 529 (985)
. +. +.++.+.|.++||.+.... ++.+|++++..+|++|||+++++|.+
T Consensus 387 ~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~ 444 (453)
T 4ffc_A 387 KPGTLEPDAALTKSIAAEALSQGVLILTCGTFGNVIRLLPPLVIGDDLLDEGITALSD 444 (453)
T ss_dssp CTTSCCBCHHHHHHHHHHHHHTTEECCEECTTSCEEEECCCTTCCHHHHHHHHHHHHH
T ss_pred cCcccCCCHHHHHHHHHHHHhCCCEEecCCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 1 22 6788899999999886543 47899999999999999999999974
|
| >4eu1_A Mitochondrial aspartate aminotransferase; ssgcid, structural genomics, SEA structural genomics center for infectious disease; HET: LLP; 2.30A {Trypanosoma brucei} | Back alignment and structure |
|---|
Probab=99.29 E-value=1e-10 Score=134.51 Aligned_cols=274 Identities=12% Similarity=0.043 Sum_probs=155.2
Q ss_pred HHHHHHHHhc-CCC-----Cccee--eccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEe
Q 001989 215 NFQTMIADLT-GLP-----MSNAS--LLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVS 286 (985)
Q Consensus 215 e~q~~ia~L~-g~~-----~~~~s--l~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v 286 (985)
++++.+|+++ |.+ +.++. .+.+++++.+++...++...++||+|+++...|+++...++. .|.+++.+
T Consensus 83 ~lr~~ia~~~~~~~~~~~~~~~i~~~~~~~g~ga~~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~----~g~~~~~~ 158 (409)
T 4eu1_A 83 SFVEEAQKLCFGPTCAALRDGRIASCQTLGGTGALRIGGDLLNRFVANCNRIYGPDVGYPNHESIFAK----AGMELTPY 158 (409)
T ss_dssp HHHHHHHHHHHCSSCHHHHTTCEEEEEESHHHHHHHHHHHHGGGTSSSCCEEEEESSCCTHHHHHHHH----TTCEEEEE
T ss_pred HHHHHHHHHHcCCCchhhccCceeeeecccchHHHHHHHHHHHHhcCCCCEEEEeCCCcHhHHHHHHH----cCCeEEEE
Confidence 4667777765 665 44553 377888877766544332224789999999999999888754 57788877
Q ss_pred Cc----------hhhhc-c---CCCEeEEEEEcC-CCCeeecc---HHHHHHHHHhCCcEEEEEecCccccCCC------
Q 001989 287 DL----------KDIDY-K---SGDVCGVLVQYP-GTEGEVLD---YGDFIKNAHANGVKVVMATDLLALTILK------ 342 (985)
Q Consensus 287 ~~----------~~l~~-l---~~~t~~V~v~~p-n~~G~v~d---i~~I~~~a~~~galliV~a~~~~lg~l~------ 342 (985)
+. +++++ + .++++++++.+| |.+|.+.+ +++|+++|+++|+++++|.-...++.-.
T Consensus 159 ~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~y~~~~~~~~~~~~~ 238 (409)
T 4eu1_A 159 SYYDPATKGLNLAGMLECLDKAPEGSVILVHACAHNPTGVDPTHDDWRQVCDVIKRRNHIPFVDMAYQGFATGQLDYDAF 238 (409)
T ss_dssp CCEETTTTEECHHHHHHHHHHSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTH
T ss_pred EeecCcCCcCcHHHHHHHHHhCCCCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEeccccccccCCcccchH
Confidence 64 34555 4 235566666788 78998876 5669999999999999953112222111
Q ss_pred CCC---cccc-eEEEecC-ccccccCCCCCCcEEEE--EE-chhhHhcCCCceeeeeecCCCCcceeeeccccccccccc
Q 001989 343 PPG---ELGA-DIVVGSA-QRFGVPMGYGGPHAAFL--AT-SQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRD 414 (985)
Q Consensus 343 ~~~---~~Ga-Di~v~s~-k~lg~P~~~GGP~~G~l--~~-~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre 414 (985)
... +.+. .|+++|. |.|+.| |-.+|++ .+ ++++.+.+-..+ ....+
T Consensus 239 ~~~~~~~~~~~~i~~~S~SK~~g~~----G~riG~~~~v~~~~~~~~~l~~~~---------------------~~~~~- 292 (409)
T 4eu1_A 239 VPRHLVDMVPNLIVAQSFSKNFGLY----GHRCGALHISTASAEEAKRLVSQL---------------------ALLIR- 292 (409)
T ss_dssp HHHHHHTTSSCCEEEEECTTTSSCG----GGCCEEEEEECSSHHHHHHHHHHH---------------------HHHHH-
T ss_pred HHHHHHhhCCcEEEEecCcccccCc----cCCceEEEEEeCCHHHHHHHHHHH---------------------HHHHh-
Confidence 000 1122 3567776 877543 1235785 44 445322220000 00001
Q ss_pred ccCCCccchhHHHHHHHHHHHHHhC-----cchHHHHHHHHHHHHHHHHHHHhcCCC---eEEcCCCCcceEEEecCCHH
Q 001989 415 KATSNICTAQALLANMAAMYAVYHG-----PEGLKTIAQRVHGLAGTFALGLKKLGT---VEVQGLPFFDTVKVKCADAH 486 (985)
Q Consensus 415 ~atsni~t~~~l~a~~aa~~l~~~g-----~~Gl~~i~~~~~~~a~~l~~~L~~~g~---~~~~~~~~~~~~~~~~~~~~ 486 (985)
..+++. ..+...+++..+.... .+.++++.++..++.+++.+.|+++|. +++.. +...-+.+ ..-..
T Consensus 293 ~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~-~~~~~~~~-~~~~~ 367 (409)
T 4eu1_A 293 PMYNNP---PLYGAWVVSSILKDPQLTALWKKELKQMSSRIAEVRKRLVSELKACGSVHDWSHIE-RQVGMMAY-TGLTR 367 (409)
T ss_dssp HHHSSC---CHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCHHHH-HSCSSEEE-CCCCH
T ss_pred hhcCCC---ChHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcceec-CCceEEEE-eCCCH
Confidence 011111 1121111111112100 234677888889999999999998851 23221 11111332 22123
Q ss_pred HHHHHHH-HcCceeeeecCCeEEEEeccCCCHHHHHHHHHHHh
Q 001989 487 AIASAAY-KIEMNLRVVDSNTVTASFDETTTLEDVDKLFIVFA 528 (985)
Q Consensus 487 ~v~~~L~-~~GI~~~~~~~~~lris~t~~~t~edId~li~aL~ 528 (985)
++.++|. ++||.+.. + .|+++... +++||++++++|.
T Consensus 368 ~~~~~ll~~~gv~v~p---~-~Ri~~~~~-~~~~i~~~~~~l~ 405 (409)
T 4eu1_A 368 EQVELLRSEYHIYMTL---N-GRAAVSGL-NSTNVEYVSQAIH 405 (409)
T ss_dssp HHHHHHHHHHCEECCT---T-CEEEGGGC-CTTTHHHHHHHHH
T ss_pred HHHHHHHHcCCEEEcC---C-CEEEEEec-CHhhHHHHHHHHH
Confidence 4445554 67998864 2 48888754 4566999999986
|
| >3f6t_A Aspartate aminotransferase; YP_194538.1, STRU genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: LLP; 2.15A {Lactobacillus acidophilus ncfm} | Back alignment and structure |
|---|
Probab=99.29 E-value=1.9e-10 Score=137.24 Aligned_cols=283 Identities=11% Similarity=0.007 Sum_probs=163.3
Q ss_pred cceeeccchHHHHHHHHHHhhh--hcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc------------hhhhc-
Q 001989 229 SNASLLDEGTAAAEAMAMCNNI--QKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL------------KDIDY- 293 (985)
Q Consensus 229 ~~~sl~~~~ta~~ea~~~a~~~--~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~------------~~l~~- 293 (985)
.++.++.|+|+++..++.++.. ..++||+|+++...|+++...++ ..|.+++.+++ ++|++
T Consensus 165 ~~i~~t~G~t~al~~~~~~l~~~~l~~~gd~Viv~~p~~~~~~~~~~----~~g~~~~~v~~~~~~~~~~~~d~~~l~~~ 240 (533)
T 3f6t_A 165 TDLFPTEGGTAAIVYAFHSLAENHLLKKGDKIAINEPIFTPYLRIPE----LKDYELVEVDLHSYEKNDWEIEPNEIEKL 240 (533)
T ss_dssp EEEEEEEHHHHHHHHHHHHHHHTTSSCTTCEEEEESSCCHHHHTSGG----GGGSEEEEECCCEETTTTSEECHHHHHHH
T ss_pred ceEEEECCHHHHHHHHHHHhhhhhccCCcCEEEEcCCCcHHHHHHHH----HcCCeEEEEEecCCcccCCCCCHHHHHHH
Confidence 4788889999887776654210 12488999999999999887754 24556655543 35666
Q ss_pred cCCCEeEEEEEcC-CCCeeeccHH---HHHHHHH-hCCcEEEEEecCccccCCCCC----CcccceEEEecC-ccccccC
Q 001989 294 KSGDVCGVLVQYP-GTEGEVLDYG---DFIKNAH-ANGVKVVMATDLLALTILKPP----GELGADIVVGSA-QRFGVPM 363 (985)
Q Consensus 294 l~~~t~~V~v~~p-n~~G~v~di~---~I~~~a~-~~galliV~a~~~~lg~l~~~----~~~GaDi~v~s~-k~lg~P~ 363 (985)
+++++++|++++| |++|.+.+.+ +|+++|+ ++|+++++|. ..+......+ ...+.+++++|. |.||.
T Consensus 241 l~~~~k~v~l~~p~NPtG~~~~~~~l~~l~~la~~~~~~~li~De-~y~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~-- 317 (533)
T 3f6t_A 241 KDPSIKALIVVNPTNPTSKEFDTNALNAIKQAVEKNPKLMIISDE-VYGAFVPNFKSIYSVVPYNTMLVYSYSKLFGC-- 317 (533)
T ss_dssp SCTTEEEEEEESSCTTTCBCCCHHHHHHHHHHHHHCTTCEEEEEC-TTGGGSTTCCCHHHHSGGGEEEEEESHHHHTC--
T ss_pred hCCCCeEEEEeCCCCCCccccCHHHHHHHHHHHHhCCCCEEEEcC-CccccccCccCHhhcCCCCEEEEecCcccCCC--
Confidence 7889999999998 7799987655 8888888 6899999953 3321111111 112456999997 87753
Q ss_pred CCCCCc--EEEEEEchh-----hHhcCCCceeee-ee---cCCCCcceeeecccc-cccccccccCCCccchhHHHHHHH
Q 001989 364 GYGGPH--AAFLATSQE-----YKRMMPGRIVGV-SI---DSSGKPALRVAMQTR-EQHIRRDKATSNICTAQALLANMA 431 (985)
Q Consensus 364 ~~GGP~--~G~l~~~~~-----~~~~lp~~~vG~-t~---d~~g~~~~~l~l~tr-e~~irre~atsni~t~~~l~a~~a 431 (985)
|| +|+++++++ +++.+++..... .. .....+ ..+.+-.| -...++.+.....+++.+....++
T Consensus 318 ----~G~RiG~l~~~~~~~~~~li~~l~~~~~~~~~~~~~~~~~~p-~~~~~i~rl~~~~~~~~~~~~~~~~~~~q~a~a 392 (533)
T 3f6t_A 318 ----TGWRLGVIALNEKNVFDDNIAHLDKVELRQLHKRYSSVVLDP-DKMKFIDRLCADSRSIGLYHTAGLSTPQQIMEA 392 (533)
T ss_dssp ----GGGCEEEEEEESSCHHHHHHHTSCHHHHHHHHHHHHTTCSCG-GGCCHHHHHHHHHTTTTTGGGCSCCHHHHHHHH
T ss_pred ----cccceEEEEECcHHHHHHHHHhcchhhHHHHHhhhhccccCc-chhhhHHHHHHHHHHHHHhcccCCChHHHHHHH
Confidence 44 799999877 666664311000 00 000000 00000000 000011111111111111111111
Q ss_pred --HHHHHHh-------CcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCC--CCcceEEEecC-----------------
Q 001989 432 --AMYAVYH-------GPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGL--PFFDTVKVKCA----------------- 483 (985)
Q Consensus 432 --a~~l~~~-------g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~--~~~~~~~~~~~----------------- 483 (985)
++. .+. ..+-++++.++..++.+++.+.|. +| +....+ ..+ +.++++
T Consensus 393 ~~a~~-~L~~~~g~~~~~~~~~~~~~~~~~r~~~l~~~L~-~~-~~~~~~~~g~~--~~~~l~~~~~~~~g~~~~~~~~~ 467 (533)
T 3f6t_A 393 LFSMT-HLLTSTNGGSDDPYIDIARKLVSERYDQLHDAMQ-AP-KDETDTNTHYY--SLIDIYRLAEKIYGKEFRDYLTN 467 (533)
T ss_dssp HHHHH-HHTTCBGGGTBCHHHHHHHHHHHHHHHHHHHHHT-CC-CCCSTTBCCSE--EEEEHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHH-HHhhhccccchHHHHHHHHHHHHHHHHHHHHhcC-CC-ccccCCCceEE--EEEehHhhhhhccchHHHHHhhc
Confidence 111 121 234567888888899999999997 76 654321 122 112221
Q ss_pred --CHHHHHHHHH-HcCceeeee-----cCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 484 --DAHAIASAAY-KIEMNLRVV-----DSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 484 --~~~~v~~~L~-~~GI~~~~~-----~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
...++..+|. ++||.+... ..+.+|+|+.. .+++||+++++.|.+
T Consensus 468 ~~~~~~~~~~ll~~~GV~v~pg~~f~~~~~~iRls~a~-~~~e~i~~~i~~L~~ 520 (533)
T 3f6t_A 468 NFEQVDFLLKLAEKNGVVLVDGVGFGAKPGELRVSQAN-LPTEDYALIGKQVLE 520 (533)
T ss_dssp HCCHHHHHHHHHHHTTSSSCTTEEECSSTTEEEEESSS-SCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHhCCEEEeCCcccCCCCCEEEEEEee-CCHHHHHHHHHHHHH
Confidence 2345555554 679987431 25789999854 578999999999874
|
| >3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target 11246C, deino radiodurans, pyridoxal phosphate, transfe PSI-2; 1.70A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.27 E-value=2.8e-10 Score=131.74 Aligned_cols=282 Identities=14% Similarity=0.114 Sum_probs=152.9
Q ss_pred HHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhh-h--hc--CCCCEEEEcCCCChhHHHHHHHhhcCCC-------
Q 001989 213 LLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNN-I--QK--GKKKTFIIASNCHPQTIDICITRADGFD------- 280 (985)
Q Consensus 213 i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~-~--~~--~~g~~Vlv~~~~H~s~~~~~~~~a~~~g------- 280 (985)
..++.++++++++.+..++.+++||+.++++++.+.. . .+ .++++||+.+..|+..............
T Consensus 74 ~~~l~~~la~~~~~~~~~v~~~~gg~ea~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~ 153 (430)
T 3i4j_A 74 LEEYAGRLARFVGLPTFRFWAVSGGSEATESAVKLARQYHVERGEPGRFKVITRVPSYHGASLGSLAASGMGARRELYTP 153 (430)
T ss_dssp HHHHHHHHHHHTTCTTCEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTC-----------------------
T ss_pred HHHHHHHHHHhCCCCCCEEEEeCcHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCCcCCCCcccccccCccccccccCC
Confidence 3456678999998877789999999988888775432 2 01 2477888877655443322211110000
Q ss_pred --e--EEEEeCc-----------hhhhc-cC----CCEeEEEEEcC-C-CCeeecc----HHHHHHHHHhCCcEEEEEec
Q 001989 281 --I--KVVVSDL-----------KDIDY-KS----GDVCGVLVQYP-G-TEGEVLD----YGDFIKNAHANGVKVVMATD 334 (985)
Q Consensus 281 --i--~v~~v~~-----------~~l~~-l~----~~t~~V~v~~p-n-~~G~v~d----i~~I~~~a~~~galliV~a~ 334 (985)
. .+..++. ++|++ +. +++++|++..+ + ..|.+.+ +++|.++|+++|+++++| +
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~~vi~~p~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~D-E 232 (430)
T 3i4j_A 154 LMRPEAWPKLPKPDPARNGAEDAEGLRALLEREGPETVAAFMAEPVVGASDAALAPAPGYYERVRDICDEAGIIFIAD-E 232 (430)
T ss_dssp --CGGGSCEECCCCTTSCHHHHHTHHHHHHHHHCGGGEEEEEECSSCCGGGTTCCCCTTHHHHHHHHHHHHTCEEEEE-C
T ss_pred cCCCCCceEcCCCcccchhhHHHHHHHHHHHhcCCCCEEEEEEcCcccCcCCcccCCHHHHHHHHHHHHHcCCEEEEe-c
Confidence 0 2222332 55665 53 45666666543 4 6777766 999999999999999995 3
Q ss_pred Ccc-ccCCCCC---Ccc-c--ceEEEecCccccccCCCCC-CcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeeccc
Q 001989 335 LLA-LTILKPP---GEL-G--ADIVVGSAQRFGVPMGYGG-PHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQT 406 (985)
Q Consensus 335 ~~~-lg~l~~~---~~~-G--aDi~v~s~k~lg~P~~~GG-P~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~t 406 (985)
..+ ++..... ..+ | .|+++. +|.|++ | =-+|++.+++++++.+... .+.+
T Consensus 233 v~~~~~~~g~~~~~~~~~~~~~di~t~-sK~l~~-----G~~r~G~~~~~~~i~~~~~~~----------~~~~------ 290 (430)
T 3i4j_A 233 VMSGMGRCGSPLALSRWSGVTPDIAVL-GKGLAA-----GYAPLAGLLAAPQVYETVMGG----------SGAF------ 290 (430)
T ss_dssp TTTTTTTTSSSSGGGGTTTCCCSEEEE-CGGGTT-----TSSCCEEEEECHHHHHHHHHT----------TCBC------
T ss_pred hhhCCCcccchhhhhhhcCCCCcEEEE-cccccC-----CccccEEEEECHHHHHHHhcc----------CCcc------
Confidence 322 3321111 122 3 566654 388752 2 2357888898887765210 0000
Q ss_pred ccccccccccCCCccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhc----CCCeEEcC-CCCcceEEEe
Q 001989 407 REQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKK----LGTVEVQG-LPFFDTVKVK 481 (985)
Q Consensus 407 re~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~----~g~~~~~~-~~~~~~~~~~ 481 (985)
....|.+. ++.+..+..++ +..+.. +++.++..++.+++++.|++ ++++..+. ...+-.+.+.
T Consensus 291 ------~~~~t~~~-~~~~~aaa~aa--l~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~ 358 (430)
T 3i4j_A 291 ------MHGFTYAG-HPVSVAAGLSV--LDIVER---EDLTGAAKERGAQLLAGLQALQARFPQMMQVRGTGLLLGVVLG 358 (430)
T ss_dssp ------CCCCTTTT-CHHHHHHHHHH--HHHHHH---TTHHHHHHHHHHHHHHHHHHHHHHCTTEEEEEEETTEEEEEEC
T ss_pred ------cccCCCCC-CHHHHHHHHHH--HHHHHc---ccHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEEEEEEEEEEec
Confidence 00111111 11112222222 233222 23445555566666666554 32243331 1112122221
Q ss_pred c---------CC-HHHHHHHHHHcCceeeee-------cCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 482 C---------AD-AHAIASAAYKIEMNLRVV-------DSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 482 ~---------~~-~~~v~~~L~~~GI~~~~~-------~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
. +. +.++.+.|.++||.+... .++.+|++++...|+||+++++++|++
T Consensus 359 ~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~ 423 (430)
T 3i4j_A 359 DLATGQAFETPGIASRIGAAALKRGLITYPGSGAEPNGRGDHLLLGPPLSITAAEVDGLLALLAG 423 (430)
T ss_dssp ------------CHHHHHHHHHHTTEECC-----------CEEEECCCTTCCHHHHHHHHHHHHH
T ss_pred cccccCCCccHHHHHHHHHHHHhCCCEEEecccccCCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 1 11 478999999999987653 257899999999999999999999974
|
| >3bwn_A AT1G70560, L-tryptophan aminotransferase; auxin synthesis, pyridoxal-5'- phosphate, indole-3-pyruvate; HET: LLP PMP PHE; 2.25A {Arabidopsis thaliana} PDB: 3bwo_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=2.2e-10 Score=131.23 Aligned_cols=272 Identities=11% Similarity=0.075 Sum_probs=168.1
Q ss_pred HHHHHHHHHhcCC-----CC-cceeeccchHHHHHHHHHHhhhhcCCCC----EEEEcCCCChhHHHHHHHhhcCCCeEE
Q 001989 214 LNFQTMIADLTGL-----PM-SNASLLDEGTAAAEAMAMCNNIQKGKKK----TFIIASNCHPQTIDICITRADGFDIKV 283 (985)
Q Consensus 214 ~e~q~~ia~L~g~-----~~-~~~sl~~~~ta~~ea~~~a~~~~~~~g~----~Vlv~~~~H~s~~~~~~~~a~~~gi~v 283 (985)
.++++.+|++++. ++ .++.++.|++.++..++.++. . +|| +|++++-.|+.+...++ ..|+++
T Consensus 71 ~~lr~aia~~~~~~g~~~~~~~~i~~t~G~~~al~~~~~~l~-~--~Gd~~~~~Vlv~~P~y~~~~~~~~----~~g~~~ 143 (391)
T 3bwn_A 71 PELEDAIKDLHGVVGNAATEDRYIVVGTGSTQLCQAAVHALS-S--LARSQPVSVVAAAPFYSTYVEETT----YVRSGM 143 (391)
T ss_dssp HHHHHHHHHHHHHHCSBCCSSSEEEEEEHHHHHHHHHHHHHH-H--TSSSSSEEEEECSSCCTHHHHHHH----TTCBTT
T ss_pred HHHHHHHHHHHHhcCCCCCCCCeEEEeCChHHHHHHHHHHhc-C--CCCCCcceEEEcCCCchhHHHHHH----HcCCeE
Confidence 4566777777762 23 578899999887776665542 3 788 99999999999888875 346666
Q ss_pred EEeCc--hhhhccCCCEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCCC-CCcccceEEEecC-cc
Q 001989 284 VVSDL--KDIDYKSGDVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKP-PGELGADIVVGSA-QR 358 (985)
Q Consensus 284 ~~v~~--~~l~~l~~~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~~-~~~~GaDi~v~s~-k~ 358 (985)
+.++. ++++ .+++++|++.+| |++|.+.+ +|++.+|++++++++| +....+...+ ....+.+|+++|. |.
T Consensus 144 ~~~~~d~~~l~--~~~~k~v~l~~p~NPtG~~~~--~l~~~~~~~~~~ii~D-e~y~~~~~~~l~~~~~~~i~~~S~SK~ 218 (391)
T 3bwn_A 144 YKWEGDAWGFD--KKGPYIELVTSPNNPDGTIRE--TVVNRPDDDEAKVIHD-FAYYWPHYTPITRRQDHDIMLFTFSKI 218 (391)
T ss_dssp EEEEEESTTCC--CCSCEEEEEESSCTTTCCCCC--CCC-----CCCEEEEE-CTTCSTTTSCCCCCBCCSEEEEEHHHH
T ss_pred EEecCCHHHcC--CCCCEEEEECCCCCCCchhHH--HHHHHhhcCCCEEEEe-CCCCCCCCCccccCCCCeEEEEechhh
Confidence 55544 3333 367899989988 78999875 5666445555988885 3333221111 1245778999997 87
Q ss_pred ccccCCCCCCcEEEEEE-chhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHH--H
Q 001989 359 FGVPMGYGGPHAAFLAT-SQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMY--A 435 (985)
Q Consensus 359 lg~P~~~GGP~~G~l~~-~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~--l 435 (985)
|+.| |--+|++++ ++++++.+.. .+. ..+.+..+ ....+..+++- .
T Consensus 219 ~g~~----GlRiG~~~~~~~~l~~~l~~-------------------------~~~-~~~~~~~~-~~q~a~~~~l~~~~ 267 (391)
T 3bwn_A 219 TGHA----GSRIGWALVKDKEVAKKMVE-------------------------YII-VNSIGVSK-ESQVRTAKILNVLK 267 (391)
T ss_dssp HSCG----GGCEEEEEECCHHHHHHHHH-------------------------HHH-HHHSSCCH-HHHHHHHHHHHHHH
T ss_pred cCCC----ccceEEEEecCHHHHHHHHH-------------------------Hhc-ccccCCCH-HHHHHHHHHHhCcc
Confidence 7532 123599988 7777665410 000 00111111 11212222220 0
Q ss_pred HHh-----CcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCC-C-C--c--------c-eEEEecCCHHHHHHHHHHcCc
Q 001989 436 VYH-----GPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGL-P-F--F--------D-TVKVKCADAHAIASAAYKIEM 497 (985)
Q Consensus 436 ~~~-----g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~-~-~--~--------~-~~~~~~~~~~~v~~~L~~~GI 497 (985)
.++ ..+.++++.++..++.+++.+.|++++++++... . . | . -+.+++++...+.+.|.++||
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~p~~~~~~f~~~~~~~~g~~~~~~~~~~~~~~~~l~~~gV 347 (391)
T 3bwn_A 268 ETCKSESESENFFKYGREMMKNRWEKLREVVKESDAFTLPKYPEAFCNYFGKSLESYPAFAWLGTKEETDLVSELRRHKV 347 (391)
T ss_dssp HHTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHTCSSEECCCCCCEEETTTTEEECCCCSEEEEEESSSCCHHHHHHHTTE
T ss_pred hhccccccHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccCCccccccccccCCCcceEEEecCCcHHHHHHHHHHCCE
Confidence 111 1456788889999999999999999844776421 1 0 0 0 123444433456667888999
Q ss_pred eeeee-----cCCeEEEEeccCCCHHHHHHHHHHHhCC
Q 001989 498 NLRVV-----DSNTVTASFDETTTLEDVDKLFIVFAGG 530 (985)
Q Consensus 498 ~~~~~-----~~~~lris~t~~~t~edId~li~aL~~~ 530 (985)
.+... ..+.+|+|++ +++++|+++++.|.+-
T Consensus 348 ~v~pg~~fg~~~~~iRis~~--~~~e~i~~~~~~L~~~ 383 (391)
T 3bwn_A 348 MSRAGERCGSDKKHVRVSML--SREDVFNVFLERLANM 383 (391)
T ss_dssp ECEEGGGGTCCTTEEEEESC--SCHHHHHHHHHHHHSC
T ss_pred EEccCCCCCCCCCEEEEEec--CCHHHHHHHHHHHHHH
Confidence 87542 1578999998 4899999999999864
|
| >3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, csgid; 2.05A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=99.26 E-value=3.6e-10 Score=131.86 Aligned_cols=282 Identities=11% Similarity=0.115 Sum_probs=164.5
Q ss_pred HHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhh-hh-cC---CCCEEEEcCC-CChhHHHHHHHhh--------cC
Q 001989 213 LLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNN-IQ-KG---KKKTFIIASN-CHPQTIDICITRA--------DG 278 (985)
Q Consensus 213 i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~-~~-~~---~g~~Vlv~~~-~H~s~~~~~~~~a--------~~ 278 (985)
..++.+.++++++.+.. +.+++|||.++++++.+.+ +. .. ++++||+.+. -|......+..-. ..
T Consensus 93 ~~~la~~l~~~~~~~~~-v~~~~ggseA~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~ 171 (452)
T 3n5m_A 93 AIKLAEKLNEWLGGEYV-IFFSNSGSEANETAFKIARQYYAQKGEPHRYKFMSRYRGYHGNTMATMAATGQAQRRYQYEP 171 (452)
T ss_dssp HHHHHHHHHHHHTSCEE-EEEESSHHHHHHHHHHHHHHHHHTTTCTTCCEEEEETTCCCCSSHHHHHSCCCGGGTTTTCC
T ss_pred HHHHHHHHHHhCCCCce-EEEeCchHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCCHHHHhcCCchhhccccCC
Confidence 34567788999987766 8888999988888775432 20 12 5678887665 4544443332100 00
Q ss_pred CCeEEEEeC--------------------chhhhc-cC----CCEeEEEEEcC--CCCeeecc----HHHHHHHHHhCCc
Q 001989 279 FDIKVVVSD--------------------LKDIDY-KS----GDVCGVLVQYP--GTEGEVLD----YGDFIKNAHANGV 327 (985)
Q Consensus 279 ~gi~v~~v~--------------------~~~l~~-l~----~~t~~V~v~~p--n~~G~v~d----i~~I~~~a~~~ga 327 (985)
....+..++ +++|++ +. +++++|++..+ | +|.+.+ +++|.++|+++|+
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~~vi~ep~~~n-~G~~~~~~~~l~~l~~l~~~~~~ 250 (452)
T 3n5m_A 172 FASGFLHVTPPDCYRMPGIERENIYDVECVKEVDRVMTWELSETIAAFIMEPIITG-GGILMAPQDYMKAVHETCQKHGA 250 (452)
T ss_dssp CCSCEEEECCCCTTTSTTTTTSCGGGCHHHHHHHHHHHHHCGGGEEEEEECSSBTT-TTCBCCCTTHHHHHHHHHHHHTC
T ss_pred CCCCCeEeCCCccccCccCCchhhHHHHHHHHHHHHHHhcCCCCEEEEEEccccCC-CCeeeCCHHHHHHHHHHHHHcCC
Confidence 111233333 356666 54 67888888776 7 998876 9999999999999
Q ss_pred EEEEEecCcc-ccCCCC---CCccc--ceEEEecCccccccCCCCC-CcEEEEEEchhhHhcCCCceeeeeecCCCCcce
Q 001989 328 KVVMATDLLA-LTILKP---PGELG--ADIVVGSAQRFGVPMGYGG-PHAAFLATSQEYKRMMPGRIVGVSIDSSGKPAL 400 (985)
Q Consensus 328 lliV~a~~~~-lg~l~~---~~~~G--aDi~v~s~k~lg~P~~~GG-P~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~ 400 (985)
++++| +.++ +|.... ...+| .|+++. +|.++ || -.+|++.+++++++.+... ...+. +
T Consensus 251 llI~D-Ev~~g~g~~g~~~~~~~~~~~~di~t~-sK~l~-----~G~~~ig~~~~~~~i~~~~~~~-------~~~~~-~ 315 (452)
T 3n5m_A 251 LLISD-EVICGFGRTGKAFGFMNYDVKPDIITM-AKGIT-----SAYLPLSATAVKREIYEAFKGK-------GEYEF-F 315 (452)
T ss_dssp EEEEE-CTTTTTTTTSSSSGGGGTTCCCSEEEE-CGGGG-----TTSSCCEEEEEEHHHHGGGCSS-------STTCS-C
T ss_pred EEEEe-cchhCCCcccccchhhhcCCCCCEEee-ccccc-----CCCcceEEEEECHHHHHHHhhc-------cCCCC-c
Confidence 99995 3322 432211 12233 576653 48885 23 3578899999988876210 00000 0
Q ss_pred eeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcC----CCeEEc-CCCCc
Q 001989 401 RVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKL----GTVEVQ-GLPFF 475 (985)
Q Consensus 401 ~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~----g~~~~~-~~~~~ 475 (985)
. ..+|.+. ++.+..+..++ +..+..+ ++.++..++.+++++.|+++ +.+..+ ....+
T Consensus 316 ~------------~~~t~~~-~~~~~aaa~aa--l~~~~~~---~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~ 377 (452)
T 3n5m_A 316 R------------HINTFGG-NPAACALALKN--LEIIENE---NLIERSAQMGSLLLEQLKEEIGEHPLVGDIRGKGLL 377 (452)
T ss_dssp C------------CCCSSTT-CHHHHHHHHHH--HHHHHHT---THHHHHHHHHHHHHHHHHHHHTTCTTEEEEEESSSC
T ss_pred c------------ccCCCCC-CHHHHHHHHHH--HHHHHhc---cHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEEEEEE
Confidence 0 0122221 11112122222 2333222 34555666667777766543 323322 11112
Q ss_pred ceEEEe-cC-------C--HHHHHHHHHHcCceeeeec------CCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 476 DTVKVK-CA-------D--AHAIASAAYKIEMNLRVVD------SNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 476 ~~~~~~-~~-------~--~~~v~~~L~~~GI~~~~~~------~~~lris~t~~~t~edId~li~aL~~ 529 (985)
-.+.+. .. . ..++.+.|.++||.+.... ++.+|++++..+|++|||+++++|.+
T Consensus 378 ~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~ 447 (452)
T 3n5m_A 378 VGIELVNDKETKEPIDNDKIASVVNACKEKGLIIGRNGMTTAGYNNILTLAPPLVISSEEIAFVIGTLKT 447 (452)
T ss_dssp EEEEEEEETTTTEECCHHHHHHHHHHHHHTTEECEECTTSSTTCCCEEEECCCTTCCHHHHHHHHHHHHH
T ss_pred EEEEEecCCcccCCCCHHHHHHHHHHHHHCCcEEeecCcccCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 122221 11 1 3578899999999887643 58899999999999999999999874
|
| >3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, biotin biosynthesis, pyridoxal phosphate, adenosyl-L-methionine; HET: PLP; 1.90A {Bacillus subtilis} SCOP: c.67.1.0 PDB: 3drd_A 3du4_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=6.9e-10 Score=129.42 Aligned_cols=282 Identities=11% Similarity=0.109 Sum_probs=155.9
Q ss_pred HHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhh-h---hc-CCCCEEEEcCCCC-hhHHHHHHHhhc--------C
Q 001989 213 LLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNN-I---QK-GKKKTFIIASNCH-PQTIDICITRAD--------G 278 (985)
Q Consensus 213 i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~-~---~~-~~g~~Vlv~~~~H-~s~~~~~~~~a~--------~ 278 (985)
..++.+.++++++.+...+.+++|||.++++++.+.+ . .. .++++||+.+..+ ......+..-.. .
T Consensus 89 ~~~la~~l~~~~~~~~~~v~~~~sGseA~~~al~~~~~~~~~~G~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~ 168 (448)
T 3dod_A 89 ATQLAETLIDISPKKLTRVFYSDSGAEAMEIALKMAFQYWKNIGKPEKQKFIAMKNGYHGDTIGAVSVGSIELFHHVYGP 168 (448)
T ss_dssp HHHHHHHHHHHSCTTEEEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEEC-------------------------
T ss_pred HHHHHHHHHHhCCCCCCEEEEeCchHHHHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCccHHHHHhcCCccccccccC
Confidence 3456788999997666789899999999888875432 2 20 1268998877655 433332211000 0
Q ss_pred CCeEEEEeC-------------------chhhhc-cC---CCEeEEEEEcC--CCCeeecc----HHHHHHHHHhCCcEE
Q 001989 279 FDIKVVVSD-------------------LKDIDY-KS---GDVCGVLVQYP--GTEGEVLD----YGDFIKNAHANGVKV 329 (985)
Q Consensus 279 ~gi~v~~v~-------------------~~~l~~-l~---~~t~~V~v~~p--n~~G~v~d----i~~I~~~a~~~gall 329 (985)
....+..++ +++|++ +. +++++|++..+ +..|.+.+ +++|.++|+++|+++
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~~G~~~~~~~~l~~l~~l~~~~~~~l 248 (448)
T 3dod_A 169 LMFESYKAPIPYVYRSESGDPDECRDQCLRELAQLLEEHHEEIAALSIESMVQGASGMIVMPEGYLAGVRELCTTYDVLM 248 (448)
T ss_dssp ----CEEECCCCCTTSSSCCHHHHHHHHHHHHHHHHHHHGGGEEEEEEESSEESTTTCEECCTTHHHHHHHHHHHTTCEE
T ss_pred CCCCceEeCCCccccCCccchhhhhHHHHHHHHHHHHhCCCCEEEEEEeCcccCCCCeecCCHHHHHHHHHHHHHhCCEE
Confidence 011222232 345665 54 56777777654 66787765 999999999999999
Q ss_pred EEEecCcc-ccCCCCC---Cccc--ceEEEecCccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeee
Q 001989 330 VMATDLLA-LTILKPP---GELG--ADIVVGSAQRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVA 403 (985)
Q Consensus 330 iV~a~~~~-lg~l~~~---~~~G--aDi~v~s~k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~ 403 (985)
|+| +.++ +|..... ..+| .|+++. +|.|++ |.-.+|++.+++++++.+...... ... +
T Consensus 249 I~D-Ev~~g~g~~g~~~a~~~~~~~~di~t~-sK~l~~----G~~~ig~v~~~~~~~~~~~~~~~~------~~~-~--- 312 (448)
T 3dod_A 249 IVD-EVATGFGRTGKMFACEHENVQPDLMAA-GKGITG----GYLPIAVTFATEDIYKAFYDDYEN------LKT-F--- 312 (448)
T ss_dssp EEE-CTTTTTTTTSSSSGGGGGTCCCSEEEE-CGGGGT----TSSCCEEEEEEHHHHHTTCSCGGG------CCC-C---
T ss_pred EEe-ccccCCCcccchhhhhhcCCCCCEEEe-cccccC----CcCceEEEEECHHHHHHhhhcccc------CCc-c---
Confidence 995 3333 4322111 1233 476654 488852 212357888899988876320000 000 0
Q ss_pred cccccccccccccCCCccchh-HHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhc---CCCeEEc-CCCCcceE
Q 001989 404 MQTREQHIRRDKATSNICTAQ-ALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKK---LGTVEVQ-GLPFFDTV 478 (985)
Q Consensus 404 l~tre~~irre~atsni~t~~-~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~---~g~~~~~-~~~~~~~~ 478 (985)
....|. +.+. +..+..++ +..+..+ ++.++..++.+++++.|.+ .+.+... ....+ +
T Consensus 313 ---------~~~~t~--~~~~~~~aaa~aa--l~~~~~~---~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~g~~--~ 374 (448)
T 3dod_A 313 ---------FHGHSY--TGNQLGCAVALEN--LALFESE---NIVEQVAEKSKKLHFLLQDLHALPHVGDIRQLGFM--C 374 (448)
T ss_dssp ---------CCCCTT--TTCHHHHHHHHHH--HHHHHHT---THHHHHHHHHHHHHHHHHHHTTSTTEEEEEEETTE--E
T ss_pred ---------cccCCC--CcCHHHHHHHHHH--HHHHhcc---cHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeeeEE--E
Confidence 001111 1111 12122222 2332222 3455556666666666654 3212221 11111 2
Q ss_pred EEecCC--------------HHHHHHHHHHcCceeeeecCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 479 KVKCAD--------------AHAIASAAYKIEMNLRVVDSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 479 ~~~~~~--------------~~~v~~~L~~~GI~~~~~~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
.+.... +.++.+.|.++||.+... ++.+|++++..+|++||++++++|.+
T Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~-~~~iRi~~~~~~t~e~i~~~l~~l~~ 438 (448)
T 3dod_A 375 GAELVRSKETKEPYPADRRIGYKVSLKMRELGMLTRPL-GDVIAFLPPLASTAEELSEMVAIMKQ 438 (448)
T ss_dssp EEEECSBTTTTBCCCGGGCHHHHHHHHHHHTTEECCEE-TTEEEECCCTTCCHHHHHHHHHHHHH
T ss_pred EEEEccCcccccccchhhHHHHHHHHHHHHCCcEEecc-CCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 222221 368999999999988764 48999999999999999999999974
|
| >3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent transferase-like fold, ST genomics, joint center for structural genomics, JCSG; HET: MSE LLP PLP; 1.55A {Mesorhizobium loti} PDB: 3fcr_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=1.1e-09 Score=128.26 Aligned_cols=287 Identities=14% Similarity=0.044 Sum_probs=161.2
Q ss_pred HHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhh-hh--c--CCCCEEEEcC-CCChhHHHHHHHhh--------c
Q 001989 212 SLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNN-IQ--K--GKKKTFIIAS-NCHPQTIDICITRA--------D 277 (985)
Q Consensus 212 ~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~-~~--~--~~g~~Vlv~~-~~H~s~~~~~~~~a--------~ 277 (985)
...++.+.++++++.+..++.+++||+.++++++.+.+ +. + .++++||+.+ ..|......+..-. .
T Consensus 96 ~~~~la~~l~~~~~~~~~~v~~~~gGseA~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~ 175 (460)
T 3gju_A 96 ASITLAKMIIDRAPKGMSRVYFGLSGSDANETNIKLIWYYNNVLGRPEKKKIISRWRGYHGSGVMTGSLTGLDLFHNAFD 175 (460)
T ss_dssp HHHHHHHHHHHHSCTTEEEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHCCCGGGTTTTT
T ss_pred HHHHHHHHHHhhCCCCcCEEEEeCchHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCCHHHhhccCCcccccccC
Confidence 34456788999987777789999999999988775432 21 0 2567887766 55655544432100 0
Q ss_pred --CCCeEEEEeC-------------------chhhhc-cC----CCEeEEEEEcC-CCCeeecc----HHHHHHHHHhCC
Q 001989 278 --GFDIKVVVSD-------------------LKDIDY-KS----GDVCGVLVQYP-GTEGEVLD----YGDFIKNAHANG 326 (985)
Q Consensus 278 --~~gi~v~~v~-------------------~~~l~~-l~----~~t~~V~v~~p-n~~G~v~d----i~~I~~~a~~~g 326 (985)
..++..+.++ +++|++ +. +++++|++..+ +..|.+.+ +++|.++|+++|
T Consensus 176 ~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~le~~i~~~~~~~~aaii~ep~~~~~G~~~~~~~~l~~l~~l~~~~~ 255 (460)
T 3gju_A 176 LPRAPVLHTEAPYYFRRTDRSMSEEQFSQHCADKLEEMILAEGPETIAAFIGEPILGTGGIVPPPAGYWEKIQAVLKKYD 255 (460)
T ss_dssp CSCTTEEEECCCCGGGCSCTTCCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTT
T ss_pred CCCCCCEEeCCCccccCCccccChhHHHHHHHHHHHHHHHhcCCCCEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcC
Confidence 1133333222 245655 43 56777777655 56777665 999999999999
Q ss_pred cEEEEEecCcc-ccCCCCC---Cccc--ceEEEecCccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcce
Q 001989 327 VKVVMATDLLA-LTILKPP---GELG--ADIVVGSAQRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPAL 400 (985)
Q Consensus 327 alliV~a~~~~-lg~l~~~---~~~G--aDi~v~s~k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~ 400 (985)
+++++| +..+ +|..... ..+| .|+++. +|+|++ |+-.+|++.+++++++.+.... +. ... +
T Consensus 256 ~llI~D-Ev~~g~gr~g~~~~~~~~~~~pdi~t~-sK~l~g----G~~~lg~v~~~~~i~~~~~~~~-----~~-~~~-~ 322 (460)
T 3gju_A 256 VLLVAD-EVVTGFGRLGTMFGSDHYGIKPDLITI-AKGLTS----AYAPLSGVIVADRVWQVLVQGS-----DK-LGS-L 322 (460)
T ss_dssp CEEEEE-CTTTTTTTTSSSCHHHHHTCCCSEEEE-CGGGTT----TSSCCEEEEEEHHHHHHHHHHH-----HH-HCS-C
T ss_pred CEEEEe-ccccCCCcccccchHhhcCCCCCeeee-ehhhcC----CCCCeEEEEECHHHHHHHhccc-----cc-ccc-c
Confidence 999995 3333 4322111 1223 466654 388742 3244678888988877651000 00 000 0
Q ss_pred eeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHH----hcCCCeEEcC-CCCc
Q 001989 401 RVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGL----KKLGTVEVQG-LPFF 475 (985)
Q Consensus 401 ~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L----~~~g~~~~~~-~~~~ 475 (985)
....|.+. ++.+..+..++ +..+..++ +.++..++.+++++.| ++.+.+..+. ...+
T Consensus 323 ------------~~~~t~~~-~~~~~aaa~aa--l~~~~~~~---~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~g~~ 384 (460)
T 3gju_A 323 ------------GHGWTYSA-HPICVAAGVAN--LELIDEMD---LVTNAGETGAYFRAELAKAVGGHKNVGEVRGDGML 384 (460)
T ss_dssp ------------SCCCTTTT-CHHHHHHHHHH--HHHHHHTT---HHHHHHHHHHHHHHHHHHHHTTSTTEEEEEEETTE
T ss_pred ------------ccCCCCCC-CHHHHHHHHHH--HHHHHhcc---HHHHHHHHHHHHHHHHHHHHhcCCCeEEEeeeeEE
Confidence 00111111 11112222222 23332233 3344444455555544 4443233221 1111
Q ss_pred ceEEEecC-----------C-HHHHHHHHHHcCceeeeec-CCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 476 DTVKVKCA-----------D-AHAIASAAYKIEMNLRVVD-SNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 476 ~~~~~~~~-----------~-~~~v~~~L~~~GI~~~~~~-~~~lris~t~~~t~edId~li~aL~~ 529 (985)
-.+.+..+ . +.++.+.|.++||.+.... .+.+|++++...|+||||+++++|.+
T Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~ 451 (460)
T 3gju_A 385 AAVEFVADKDDRVFFDASQKIGPQVATALAASGVIGRAMPQGDILGFAPPLCLTREQADIVVSKTAD 451 (460)
T ss_dssp EEEEECSBTTTTBCCCGGGCHHHHHHHHHHHTTEECEECSSSCEEEECCCTTCCHHHHHHHHHHHHH
T ss_pred EEEEEccCccccccccchHHHHHHHHHHHHHCCeEEecCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 12222111 1 5688999999999887643 48899999999999999999999974
|
| >4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase fold type I; HET: TA8; 1.35A {Chromobacterium violaceum} PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=6.5e-10 Score=130.06 Aligned_cols=280 Identities=12% Similarity=0.116 Sum_probs=159.6
Q ss_pred HHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhh-hh--c--CCCCEEEEcC-CCChhHHHHHHHhhc---------
Q 001989 213 LLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNN-IQ--K--GKKKTFIIAS-NCHPQTIDICITRAD--------- 277 (985)
Q Consensus 213 i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~-~~--~--~~g~~Vlv~~-~~H~s~~~~~~~~a~--------- 277 (985)
..++.+.++++++.+..++.+++||+.++++++.+.+ +. + .++++||+.+ .-|......+..-..
T Consensus 96 ~~~la~~l~~~~~~~~~~v~~~~ggseA~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~ 175 (459)
T 4a6r_A 96 VVELSSLLAEVTPAGFDRVFYTNSGSESVDTMIRMVRRYWDVQGKPEKKTLIGRWNGYHGSTIGGASLGGMKYMHEQGDL 175 (459)
T ss_dssp HHHHHHHHHHHSCTTCCEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCTTTC---CC
T ss_pred HHHHHHHHHHhCCCCCCEEEEeCchHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCccHHHHhhcCChhhccccCC
Confidence 3456778999998777789999999999888775433 21 0 1467887766 455444433321000
Q ss_pred -CCCeEEEEeC------------------chhhhc-cC----CCEeEEEEEcC-CCCeeecc----HHHHHHHHHhCCcE
Q 001989 278 -GFDIKVVVSD------------------LKDIDY-KS----GDVCGVLVQYP-GTEGEVLD----YGDFIKNAHANGVK 328 (985)
Q Consensus 278 -~~gi~v~~v~------------------~~~l~~-l~----~~t~~V~v~~p-n~~G~v~d----i~~I~~~a~~~gal 328 (985)
..++..+.++ +++|++ +. +++++|++..+ +..|.+.+ +++|.++|+++|++
T Consensus 176 ~~~~~~~~~~p~~~~~~~~~d~~~~~~~~~~~le~~i~~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~l 255 (459)
T 4a6r_A 176 PIPGMAHIEQPWWYKHGKDMTPDEFGVVAARWLEEKILEIGADKVAAFVGEPIQGAGGVIVPPATYWPEIERICRKYDVL 255 (459)
T ss_dssp SCSSEEEECCCCHHHHCTTCCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHTTCE
T ss_pred CCCCCEEeCCCccccCCcccCHHHHHHHHHHHHHHHHHHcCCCCEEEEEECCccCCCCcccCCHHHHHHHHHHHHHcCCE
Confidence 0133333221 345665 43 45676766544 56777776 99999999999999
Q ss_pred EEEEecCcc-ccCCCCC---Ccc--cceEEEecCccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceee
Q 001989 329 VVMATDLLA-LTILKPP---GEL--GADIVVGSAQRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRV 402 (985)
Q Consensus 329 liV~a~~~~-lg~l~~~---~~~--GaDi~v~s~k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l 402 (985)
+++| +.++ +|..... ..+ ..|+++. +|.|++ ||-.+|++.+++++.+.+... .. +
T Consensus 256 lI~D-Ev~~g~gr~G~~~~~~~~~~~pdi~t~-sK~l~g----g~~~lg~v~~~~~i~~~~~~~----------~~-~-- 316 (459)
T 4a6r_A 256 LVAD-EVICGFGRTGEWFGHQHFGFQPDLFTA-AKGLSS----GYLPIGAVFVGKRVAEGLIAG----------GD-F-- 316 (459)
T ss_dssp EEEE-CTTTTTTTTSSSSHHHHHTCCCSEEEE-CGGGGT----TSSCCEEEEECHHHHHHHHHH----------CT-T--
T ss_pred EEEe-ccccCCCcccccchHhhcCCCCCeeeh-hhhhcC----CCCCccceeeCHHHHHHhhcC----------CC-c--
Confidence 9995 3332 3322111 112 3577654 387752 334568888898887765200 00 0
Q ss_pred ecccccccccccccCCCccchhHHHHHHHHH-HHHHhCcchHHHHHHHHH-HHHHHHHHHH----hcCCCeEEcC-CCCc
Q 001989 403 AMQTREQHIRRDKATSNICTAQALLANMAAM-YAVYHGPEGLKTIAQRVH-GLAGTFALGL----KKLGTVEVQG-LPFF 475 (985)
Q Consensus 403 ~l~tre~~irre~atsni~t~~~l~a~~aa~-~l~~~g~~Gl~~i~~~~~-~~a~~l~~~L----~~~g~~~~~~-~~~~ 475 (985)
....|.+. .++ +..|++ .+..+..++ +.++.. ++.+++++.| .+.+.+..+. ...+
T Consensus 317 ----------~~~~t~~~---~~~-~~aaa~aal~~~~~~~---~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~g~~ 379 (459)
T 4a6r_A 317 ----------NHGFTYSG---HPV-CAAVAHANVAALRDEG---IVQRVKDDIGPYMQKRWRETFSRFEHVDDVRGVGMV 379 (459)
T ss_dssp ----------HHHHHHCS---CHH-HHHHHHHHHHHHHHTC---HHHHHHHTHHHHHHHHHHHHHTTCTTEEEEEEETTE
T ss_pred ----------ccCCCCCC---CHH-HHHHHHHHHHHHhcch---HHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEEEEEE
Confidence 00011111 112 222222 123332233 344444 5555555555 4333233221 1111
Q ss_pred ceEEEecC----------C--HHHHHHHHHHcCceeeeecCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 476 DTVKVKCA----------D--AHAIASAAYKIEMNLRVVDSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 476 ~~~~~~~~----------~--~~~v~~~L~~~GI~~~~~~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
-.+.+..+ . +.++.+.|.++||.+.... +.+|++++...|++|+|+++++|.+
T Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~g-~~iRi~~~~~~t~e~i~~~l~~l~~ 444 (459)
T 4a6r_A 380 QAFTLVKNKAKRELFPDFGEIGTLCRDIFFRNNLIMRACG-DHIVSAPPLVMTRAEVDEMLAVAER 444 (459)
T ss_dssp EEEEECSBTTTTBCCSSTTHHHHHHHHHHHHTTEECEEET-TEEEECCCTTCCHHHHHHHHHHHHH
T ss_pred EEEEEecCccccccccchHHHHHHHHHHHHHCCeEEecCC-CEEEEECCCCCCHHHHHHHHHHHHH
Confidence 11222111 1 5678899999999887643 8999999999999999999999975
|
| >3hmu_A Aminotransferase, class III; structural genomics, pyridoxal phosphate, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi} | Back alignment and structure |
|---|
Probab=99.24 E-value=8.1e-10 Score=129.78 Aligned_cols=280 Identities=11% Similarity=0.107 Sum_probs=165.3
Q ss_pred HHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHH-hhhh--c--CCCCEEEEcC-CCChhHHHHHHHhh---------c
Q 001989 213 LLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMC-NNIQ--K--GKKKTFIIAS-NCHPQTIDICITRA---------D 277 (985)
Q Consensus 213 i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a-~~~~--~--~~g~~Vlv~~-~~H~s~~~~~~~~a---------~ 277 (985)
..++.+.++++++.+..++.+++||+.++++++.+ +.+. + .++++||+.+ .-|......+..-. .
T Consensus 101 ~~~lae~l~~~~~~~~~~v~~~~sGseA~~~aik~a~~~~~~~g~~~~~~ii~~~~~yHg~t~~~~~~~~~~~~~~~~~~ 180 (472)
T 3hmu_A 101 AIALAQKLAELAPGDLNHVFFAGGGSEANDTNIRMVRTYWQNKGQPEKTVIISRKNAYHGSTVASSALGGMAGMHAQSGL 180 (472)
T ss_dssp HHHHHHHHHHHSCTTEEEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCHHHHHTTCC
T ss_pred HHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCcCCCccHHhhhccCChhhccccCC
Confidence 34567889999987777898999999998887754 3321 1 1467777655 56655544432100 0
Q ss_pred CCCeEEEEeC------------------chhhhc-cC----CCEeEEEEEcC-CCCeeecc----HHHHHHHHHhCCcEE
Q 001989 278 GFDIKVVVSD------------------LKDIDY-KS----GDVCGVLVQYP-GTEGEVLD----YGDFIKNAHANGVKV 329 (985)
Q Consensus 278 ~~gi~v~~v~------------------~~~l~~-l~----~~t~~V~v~~p-n~~G~v~d----i~~I~~~a~~~gall 329 (985)
..++..+..| +++|++ +. +++++|++..+ +..|.+.+ +++|.++|+++|+++
T Consensus 181 ~~~~~~v~~p~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~aavi~epv~~~gG~~~~~~~~l~~l~~l~~~~gill 260 (472)
T 3hmu_A 181 IPDVHHINQPNWWAEGGDMDPEEFGLARARELEEAILELGENRVAAFIAEPVQGAGGVIVAPDSYWPEIQRICDKYDILL 260 (472)
T ss_dssp CSSEEEECCCCHHHHCTTCCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBSTTTCBCCCTTHHHHHHHHHHHTTCEE
T ss_pred CCCcEEeCCCccccCCcccCHHHHHHHHHHHHHHHHHhcCCCCEEEEEEcCccCCCCcccCCHHHHHHHHHHHHHcCCEE
Confidence 0133333221 345555 43 56777777654 56788877 999999999999999
Q ss_pred EEEecCcc-ccCCCCC---Cccc--ceEEEecCccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeee
Q 001989 330 VMATDLLA-LTILKPP---GELG--ADIVVGSAQRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVA 403 (985)
Q Consensus 330 iV~a~~~~-lg~l~~~---~~~G--aDi~v~s~k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~ 403 (985)
|+| +..+ +|-.... ..+| .|+++. +|++++ ||-.+|++.+++++++.+..+. +.
T Consensus 261 I~D-Ev~~gfgr~G~~~a~~~~~v~pdi~t~-sK~l~g----g~~plG~v~~~~~i~~~~~~~~------------~~-- 320 (472)
T 3hmu_A 261 IAD-EVICGFGRTGNWFGTQTMGIRPHIMTI-AKGLSS----GYAPIGGSIVCDEVAHVIGKDE------------FN-- 320 (472)
T ss_dssp EEE-CTTTTTTTTSSSCHHHHHTCCCSEEEE-CGGGTT----TSSCCEEEEEEHHHHHHHTTSC------------BC--
T ss_pred EEE-ccccCCcccCccchhHHhCCCCceeee-chhhhc----CCcceEEEEECHHHHHhcccCC------------cc--
Confidence 995 3332 4322111 1123 577754 387752 4334578888998887662110 00
Q ss_pred cccccccccccccCCCccchhHHHHHHHHHHHHHhCcchHHHHHHHHH-HHHHHHHHHHhcCC---CeEEc-CCCCcceE
Q 001989 404 MQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVH-GLAGTFALGLKKLG---TVEVQ-GLPFFDTV 478 (985)
Q Consensus 404 l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~-~~a~~l~~~L~~~g---~~~~~-~~~~~~~~ 478 (985)
...|.+. .+.+..+..+++ ..+.. +++.++.. ++.+++++.|+++. .+..+ ....+-.+
T Consensus 321 ----------~~~t~~~-np~a~aAa~aaL--~~~~~---~~~~~~~~~~~~~~l~~~L~~l~~~~~v~~vr~~G~~~~i 384 (472)
T 3hmu_A 321 ----------HGYTYSG-HPVAAAVALENL--RILEE---ENILDHVRNVAAPYLKEKWEALTDHPLVGEAKIVGMMASI 384 (472)
T ss_dssp ----------CCCTTTT-CHHHHHHHHHHH--HHHHH---TTHHHHHHHTHHHHHHHHHHGGGGSTTEEEEEEETTEEEE
T ss_pred ----------ccCCCCC-CHHHHHHHHHHH--HHHHH---hHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEecCceEEE
Confidence 0111111 111122222222 33322 24556666 77788888887652 12222 11111122
Q ss_pred EEecC-----------C--HHHHHHHHHHcCceeeeecCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 479 KVKCA-----------D--AHAIASAAYKIEMNLRVVDSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 479 ~~~~~-----------~--~~~v~~~L~~~GI~~~~~~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
.+... . +.++.+.|.++||.++... +.+|++++...|++|||+++++|.+
T Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~g-~~iRi~p~~~~t~e~i~~~l~~l~~ 447 (472)
T 3hmu_A 385 ALTPNKASRAKFASEPGTIGYICRERCFANNLIMRHVG-DRMIISPPLVITPAEIDEMFVRIRK 447 (472)
T ss_dssp EECSCGGGTCCBSSCTTHHHHHHHHHHHHTTBCCEEET-TEEEECCCTTCCHHHHHHHHHHHHH
T ss_pred EEecCccccccccchhHHHHHHHHHHHHHCCcEEEecC-CEEEEECCCCCCHHHHHHHHHHHHH
Confidence 22211 2 5678899999999987654 8999999999999999999999985
|
| >3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle structural genomics center for infectious disease; HET: LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A | Back alignment and structure |
|---|
Probab=99.23 E-value=2.8e-09 Score=124.41 Aligned_cols=275 Identities=14% Similarity=0.112 Sum_probs=157.3
Q ss_pred HHHHHHHHHHhcCCC-CcceeeccchHHHHHHHHH-HhhhhcCCCCEEEEcCC-CChhHHHHHHHhh------cC---C-
Q 001989 213 LLNFQTMIADLTGLP-MSNASLLDEGTAAAEAMAM-CNNIQKGKKKTFIIASN-CHPQTIDICITRA------DG---F- 279 (985)
Q Consensus 213 i~e~q~~ia~L~g~~-~~~~sl~~~~ta~~ea~~~-a~~~~~~~g~~Vlv~~~-~H~s~~~~~~~~a------~~---~- 279 (985)
..++.+.++++++.+ ...+.+++|||.++++++. ++.+. ++++||+.+. -|......+..-. .. .
T Consensus 106 ~~~la~~l~~~~~~~~~~~v~~~~sGseA~~~Alk~a~~~~--g~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~ 183 (451)
T 3oks_A 106 YVAVCEQLNRLTPVRGDKRSALFNSGSEAVENAVKIARSHT--HKPAVVAFDHAYHGRTNLTMALTAKVMPYKDGFGPFA 183 (451)
T ss_dssp HHHHHHHHHHHSSCCSSEEEEEESSHHHHHHHHHHHHHHHH--CCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTCCSCC
T ss_pred HHHHHHHHHHhCCcCCCCEEEEeCcHHHHHHHHHHHHHHhc--CCCeEEEEcCCcCCccHHHHHhcCCCcccccCCCCCC
Confidence 345677899998754 3568889999999888774 44334 5678877664 5544443332100 00 1
Q ss_pred -CeEEEEeCc----------------hhhh-------c-cC-CCEeEEEEEcC-CCCeeecc----HHHHHHHHHhCCcE
Q 001989 280 -DIKVVVSDL----------------KDID-------Y-KS-GDVCGVLVQYP-GTEGEVLD----YGDFIKNAHANGVK 328 (985)
Q Consensus 280 -gi~v~~v~~----------------~~l~-------~-l~-~~t~~V~v~~p-n~~G~v~d----i~~I~~~a~~~gal 328 (985)
++....++. ++++ + ++ +++++|++... +..|.+.+ +++|.++|+++|++
T Consensus 184 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~aavi~ep~~~~gG~~~~~~~~l~~l~~l~~~~g~~ 263 (451)
T 3oks_A 184 PEIYRAPLSYPFRDAEFGKELATDGELAAKRAITVIDKQIGADNLAAVVIEPIQGEGGFIVPADGFLPTLLDWCRKNDVV 263 (451)
T ss_dssp SSEEEECCCCHHHHGGGCTTTTTCHHHHHHHHHHHHHHHTCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHTTCE
T ss_pred CCcEEeCCCccccccccccccchhhHHHHHHHHHHHHhhcCCCCEEEEEEcCCcCCCCccCCCHHHHHHHHHHHHHcCCE
Confidence 333332220 1121 2 23 34565655443 45677765 99999999999999
Q ss_pred EEEEecCcc-ccCCCC---CCccc--ceEEEecCccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceee
Q 001989 329 VVMATDLLA-LTILKP---PGELG--ADIVVGSAQRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRV 402 (985)
Q Consensus 329 liV~a~~~~-lg~l~~---~~~~G--aDi~v~s~k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l 402 (985)
+|+| +..+ +|.... ...+| .|+++. +|.|++ |-.+|++.+++++++.+.....
T Consensus 264 lI~D-Ev~~g~g~~g~~~~~~~~~~~pdi~t~-sK~l~~-----G~~iG~v~~~~~~~~~~~~~~~-------------- 322 (451)
T 3oks_A 264 FIAD-EVQTGFARTGAMFACEHEGIDPDLIVT-AKGIAG-----GLPLSAVTGRAEIMDSPHVSGL-------------- 322 (451)
T ss_dssp EEEE-CTTTTTTTTSSSSGGGGGTCCCSEEEE-CGGGGT-----TSSCEEEEEEHHHHTCSCTTSB--------------
T ss_pred EEEE-ecccCCCccccchhhhhcCCCCCeeee-hhhhhC-----CcceEEEEECHHHHhhhcCCCc--------------
Confidence 9995 3332 332211 12233 577643 488853 2346788889988876621100
Q ss_pred ecccccccccccccCCCccchhH-HHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcC----CCeEEc-CCCCcc
Q 001989 403 AMQTREQHIRRDKATSNICTAQA-LLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKL----GTVEVQ-GLPFFD 476 (985)
Q Consensus 403 ~l~tre~~irre~atsni~t~~~-l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~----g~~~~~-~~~~~~ 476 (985)
..|. +.+.. ..+..++ +..+..+ ++.++..++.+++++.|+++ +.+..+ ....+-
T Consensus 323 ------------~~t~--~~~~~~~aaa~aa--l~~~~~~---~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~G~~~ 383 (451)
T 3oks_A 323 ------------GGTY--GGNPIACAAALAT--IETIESE---GLVARAQQIEKIMKDRLGRLQAEDDRIGDVRGRGAMI 383 (451)
T ss_dssp ------------CCSS--SSCHHHHHHHHHH--HHHHHHT---THHHHHHHHHHHHHHHHHHHHHHCTTEEEEEEETTEE
T ss_pred ------------CCCC--CCCHHHHHHHHHH--HHHHhhh---hHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEEeeEEE
Confidence 1111 11111 1122222 2332222 34555666667777766653 223222 111121
Q ss_pred eEEEec-----CC---HHHHHHHHHHcCceeeeec--CCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 477 TVKVKC-----AD---AHAIASAAYKIEMNLRVVD--SNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 477 ~~~~~~-----~~---~~~v~~~L~~~GI~~~~~~--~~~lris~t~~~t~edId~li~aL~~ 529 (985)
.+.+.. +. +.++.+.|.++||.+.... .+.+|++++..+|++|||+++++|.+
T Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~ 446 (451)
T 3oks_A 384 AMELVKAGTTEPDADLTKALCAGAHAAGVIVLSCGTYGNVVRFLPPLSIGDDLLNEGLDVLEE 446 (451)
T ss_dssp EEEEBSTTSCCBCHHHHHHHHHHHHHTTEECEEECTTSCEEEECCCTTCCHHHHHHHHHHHHH
T ss_pred EEEEecCccCCCCHHHHHHHHHHHHhCCcEEecCCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 233321 22 6788999999999886543 47899999999999999999999873
|
| >2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG FUC BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB: 2hor_A* 1lk9_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=8.4e-12 Score=144.84 Aligned_cols=242 Identities=10% Similarity=-0.041 Sum_probs=144.8
Q ss_pred CCCCEEEEcCCCCcccHHHHHHCCcEEEEEcCCCCCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccCHHHHHHHH
Q 001989 678 HHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKII 756 (985)
Q Consensus 678 ~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~di~eI~~la 756 (985)
.++++|+++.+.|..+...++..|++++... +|+++|+++++ +++++|++++| |++|.+. + + + +
T Consensus 153 ~~Gd~Vlv~~P~y~~~~~~~~~~g~~~~~~~------~d~~~l~~~~~---~~~k~v~l~~p~NPtG~~~-~-~-~---l 217 (427)
T 2hox_A 153 APESKVVAHAPFYPVFREQTKYFDKKGYVWA------GNAANYVNVSN---PEQYIEMVTSPNNPEGLLR-H-A-V---I 217 (427)
T ss_dssp SCCEEEEECSSCCHHHHHHHHHSCBTTEEEE------EEGGGGTTCSC---GGGEEEEEESSCTTTCCCC-C-C-S---S
T ss_pred CCCCEEEEeCCCcccHHHHHHHcCCeeeeec------CCHHHHHHhhc---CCceEEEEcCCCCCccccc-H-H-H---H
Confidence 3678999999888777777788898876544 47888888776 67899999999 4799987 5 3 2 3
Q ss_pred HHcCCEEEEEccccccccCCCCCCccCCcEEEeCCcccccccCCCCCCceEEEEEc-ccccCcCCCCccccCCCCCCCCC
Q 001989 757 HDNGGQVYMDGANMNAQVGLTSPGYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVK-KHLAPFLPSHPVVSTGGIPAPEK 835 (985)
Q Consensus 757 ~~~galliVD~a~~~~~~~l~~pg~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~-~~l~~~lp~~~~g~~~~~~~~~~ 835 (985)
+ ++..++|.++......+.. ...+.|+++.|++|+|+.| |.++|+++++ +++.+.+.....
T Consensus 218 ~--~~~~i~d~~~~~~~~s~~~-~~~~~~i~~~S~SK~~g~~----G~RiG~~~~~~~~l~~~l~~~~~----------- 279 (427)
T 2hox_A 218 K--GCKSIYDMVYYWPHYTPIK-YKADEDILLFTMSKFTGHS----GSRFGWALIKDESVYNNLLNYMT----------- 279 (427)
T ss_dssp T--TCEEEEECTTCSTTTSCCC-SCBCCSEEEEEHHHHTSCG----GGCCEEEEECCHHHHHHHHHHHH-----------
T ss_pred c--CCCEEEeecccCCCCCccc-cCCCceEEEEeChhcCCCC----CceEEEEEECCHHHHHHHHHHHH-----------
Confidence 3 5678888765321111111 1146799999999998644 5679999995 666544321100
Q ss_pred CCCCCCCCCcchhhhHHHHHHHHHHHHh---------c-HHHHHHHHHHHHHHHHHHHHHhhccCCeee---c-------
Q 001989 836 SQPLGTIAAAPWGSALILPISYTYIAMM---------G-SKGLTEASKIAILNANYMAKRLEKHYPILF---R------- 895 (985)
Q Consensus 836 ~~~~~~i~s~~~g~~~~~~~a~a~l~~l---------g-~eGl~~~~~~~~~~a~~l~~~L~~g~~l~~---~------- 895 (985)
....+++ ...+. ++..+|... + .+-+++..++..++.+++.+.|++..++.+ .
T Consensus 280 -~~~~~~~--~~~q~----a~~~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~ 352 (427)
T 2hox_A 280 -KNTEGTP--RETQL----RSLKVLKEVVAMVKTQKGTMRDLNTFGFKKLRERWVNITALLDQSDRFSYQELPQSEYCNY 352 (427)
T ss_dssp -HHTSSCC--HHHHH----HHHHHHHHHHHHHHHHTTSTTSHHHHHHHHHHHHHHHHHHHHTTSSSEECCCCCSCEEETT
T ss_pred -hcCCCCC--HHHHH----HHHHHhhcchhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHhCcCcccccccccccccc
Confidence 0011111 11121 112223221 0 112334445567778889999976322211 0
Q ss_pred ----CCCCceeeEEEEEecCccccCCCCHHHHHHHHH-HCCCccCC-CCCCC-CCEEEEeccCCCCHHHHHHHHccCChh
Q 001989 896 ----GVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLM-DYGFHGPT-MSWPV-PGTLMIEPTESESKSWTGIVMLSSPSE 968 (985)
Q Consensus 896 ----~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~-~~Gi~~~~-~~~p~-~~~lris~t~~~t~eeId~~~~~~~l~ 968 (985)
.+.+..+ +.++++ . +..+++++|. ++||.+.. ..|+. ++++|||+.. ++++|++ +++.|+
T Consensus 353 ~~~~~p~~g~f--~~~~~~------~-~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~Ris~~~--~~e~l~~--~l~~l~ 419 (427)
T 2hox_A 353 FRRMRPPSPSY--AWVKCE------W-EEDKDCYQTFQNGRINTQNGVGFEASSRYVRLSLIK--TQDDFDQ--LMYYLK 419 (427)
T ss_dssp TTEEECCCCSE--EEEEEC------S-GGGCSHHHHHHHTTEECEEGGGGTSCTTEEEEECSS--CHHHHHH--HHHHHH
T ss_pred ccccCCCCceE--EEEECC------C-cHHHHHHHHHHHCCEEEcCCCccCCCCCEEEEEecC--CHHHHHH--HHHHHH
Confidence 1111222 335554 1 3445677764 78998753 23432 5899999984 8899999 667777
Q ss_pred HHHH
Q 001989 969 KKLH 972 (985)
Q Consensus 969 ~~~~ 972 (985)
+++.
T Consensus 420 ~~~~ 423 (427)
T 2hox_A 420 DMVK 423 (427)
T ss_dssp HHHT
T ss_pred HHHh
Confidence 6653
|
| >3b1d_A Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococcus anginosus} PDB: 3b1c_A* 3b1e_A* | Back alignment and structure |
|---|
Probab=98.86 E-value=9.9e-13 Score=150.51 Aligned_cols=270 Identities=11% Similarity=0.053 Sum_probs=166.8
Q ss_pred HHHHHHHHh----cC--CCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeC-
Q 001989 215 NFQTMIADL----TG--LPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSD- 287 (985)
Q Consensus 215 e~q~~ia~L----~g--~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~- 287 (985)
++++.++++ .| .++.++.+++|++.++++++.++. ++||+|+++...|+.+...++ ..|.+++.++
T Consensus 70 ~l~~~la~~l~~~~g~~~~~~~v~~~~g~~~a~~~~~~~~~---~~gd~vl~~~p~~~~~~~~~~----~~g~~~~~~~~ 142 (392)
T 3b1d_A 70 ELLQAVLDWEKSEHQYSFDKEDIVFVEGVVPAISIAIQAFT---KEGEAVLINSPVYPPFARSVR----LNNRKLVSNSL 142 (392)
Confidence 344555554 45 455678888999988777665542 378999999999998887764 3455555543
Q ss_pred ----------chhhhc-cC-CCEeEEEEEcC-CCCeeecc---HHHHHHHHHhCCcEEEEEecCccccCC-----CCC--
Q 001989 288 ----------LKDIDY-KS-GDVCGVLVQYP-GTEGEVLD---YGDFIKNAHANGVKVVMATDLLALTIL-----KPP-- 344 (985)
Q Consensus 288 ----------~~~l~~-l~-~~t~~V~v~~p-n~~G~v~d---i~~I~~~a~~~galliV~a~~~~lg~l-----~~~-- 344 (985)
++++++ +. +++++|++.+| |.+|.+.+ +++|.++|+++|+++++|. ..+.... .+.
T Consensus 143 ~~~~g~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De-~~~~~~~~g~~~~~~~~ 221 (392)
T 3b1d_A 143 KEENGLFQIDFEQLENDIVENDVKLYLLCNPHNPGGRVWEREVLEQIGHLCQKHHVILVSDE-IHQDLTLFGHEHVSFNT 221 (392)
Confidence 344555 55 67888888888 67998864 9999999999999999942 2221111 011
Q ss_pred -C-c-ccceEEEecC-ccccccCCCCCCcEEEEEEch-hhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCC
Q 001989 345 -G-E-LGADIVVGSA-QRFGVPMGYGGPHAAFLATSQ-EYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSN 419 (985)
Q Consensus 345 -~-~-~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~-~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsn 419 (985)
. + .+.+++++|. |.|+. +|..+|++.+++ ++++.+.... . ...
T Consensus 222 ~~~~~~~~~i~~~s~sK~~~~----~G~r~G~~~~~~~~~~~~~~~~~----------~------------------~~~ 269 (392)
T 3b1d_A 222 VSPDFKDFALVLSSATKTFNI----AGTKNSYAIIENPTLCAQFKHQQ----------L------------------VNN 269 (392)
Confidence 1 1 4566888887 88753 344568888764 3555441100 0 000
Q ss_pred ccchhHHHHHHHHH-HHHHhCcchHHHHHHHHHHHHHHHHHHHhc-CCCeEEcCCCCcceEE-EecC----CHHHHHHHH
Q 001989 420 ICTAQALLANMAAM-YAVYHGPEGLKTIAQRVHGLAGTFALGLKK-LGTVEVQGLPFFDTVK-VKCA----DAHAIASAA 492 (985)
Q Consensus 420 i~t~~~l~a~~aa~-~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~-~g~~~~~~~~~~~~~~-~~~~----~~~~v~~~L 492 (985)
+++...+ +..++. .+. .+.+.++++.++..++.+++.+.|++ ++++++..+ ...-+. +..+ +..++.+.|
T Consensus 270 ~~~~~~~-~~~a~~~~l~-~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~l 346 (392)
T 3b1d_A 270 HHEVSSL-GYIATETAYR-YGKPWLVALKAVLEENIQFAVEYFAQEAPRLKVMKP-QGTYLIWLDFSDYGLTDDALFTLL 346 (392)
Confidence 1111111 111111 112 23455778888888899999999987 533765432 111111 2322 156788888
Q ss_pred H-HcCceeeee------cCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 493 Y-KIEMNLRVV------DSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 493 ~-~~GI~~~~~------~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
. ++||.+... .++.+|++++. ++++|+++++.|.+
T Consensus 347 ~~~~gi~v~~g~~f~~~~~~~iRi~~~~--~~e~i~~~l~~l~~ 388 (392)
T 3b1d_A 347 HDQAKVILNRGSDYGSEGELHARLNIAA--PKSLVEEICKRIVC 388 (392)
Confidence 6 789987542 24679999775 57899998888864
|
| >2q7w_A Aspartate aminotransferase; mechanism-based inhibitor, PLP, sadta, PH dependence; HET: KST PSZ PMP GOL; 1.40A {Escherichia coli} SCOP: c.67.1.1 PDB: 2qa3_A* 2qb2_A* 2qb3_A* 2qbt_A* 3qn6_A* 3pa9_A* 1aaw_A* 1amq_A* 1ams_A* 1arg_A* 1amr_A* 1art_A* 1asa_A* 1asd_A* 1ase_A* 1asl_A* 1asm_A* 1asn_A* 1c9c_A* 1cq6_A* ... | Back alignment and structure |
|---|
Probab=99.22 E-value=4.9e-11 Score=136.20 Aligned_cols=273 Identities=11% Similarity=0.031 Sum_probs=162.8
Q ss_pred HHHHHHHHHhc---C---CCCcceee--ccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEE
Q 001989 214 LNFQTMIADLT---G---LPMSNASL--LDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVV 285 (985)
Q Consensus 214 ~e~q~~ia~L~---g---~~~~~~sl--~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~ 285 (985)
.++++.+|+++ + .++.++.+ +.|+|.+++.++.++... ++||+|+++...|+.+...++. .|.+++.
T Consensus 72 ~~lr~~la~~~~~~~~~~~~~~~v~~~~~~g~~~a~~~~~~~~~~~-~~gd~Vl~~~p~y~~~~~~~~~----~g~~~~~ 146 (396)
T 2q7w_A 72 PEFGRCTQELLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKN-TSVKRVWVSNPSWPNHKSVFNS----AGLEVRE 146 (396)
T ss_dssp HHHHHHHHHHHHCTTCHHHHTTCEEEEEESHHHHHHHHHHHHHHHH-SCCCEEEEEESCCTHHHHHHHH----TTCEEEE
T ss_pred HHHHHHHHHHHhcCCCCccccccEEEEecccchhhHHHHHHHHHHh-CCCCEEEEcCCCchhHHHHHHH----cCCceEE
Confidence 34667788877 2 23557777 899998888776443311 2789999999999998888753 4777777
Q ss_pred eCc----------hhhhc-cCC---CEeEEEEEcC-CCCeeec---cHHHHHHHHHhCCcEEEEEecCccccCCC-----
Q 001989 286 SDL----------KDIDY-KSG---DVCGVLVQYP-GTEGEVL---DYGDFIKNAHANGVKVVMATDLLALTILK----- 342 (985)
Q Consensus 286 v~~----------~~l~~-l~~---~t~~V~v~~p-n~~G~v~---di~~I~~~a~~~galliV~a~~~~lg~l~----- 342 (985)
++. +++++ +++ +++++++.+| |.+|.+. ++++|+++|+++|+++++|. ..+.....
T Consensus 147 ~~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De-~~~~~~~~~~~~~ 225 (396)
T 2q7w_A 147 YAYYDAENHTLDFDALINSLNEAQAGDVVLFHGCCHNPTGIDPTLEQWQTLAQLSVEKGWLPLFDF-AYQGFARGLEEDA 225 (396)
T ss_dssp EECEETTTTEECHHHHHHHHTTCCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEE-SCTTSSSCHHHHT
T ss_pred EecccCCCCCcCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEec-ccccccCCccchh
Confidence 654 34555 543 4777787887 6799885 56789999999999999953 22211111
Q ss_pred -CCC---ccc-ceEEEecC-ccccccCCCCCCcEEEEEE---chhhHhcCCCceeeeeecCCCCcceeeecccccccccc
Q 001989 343 -PPG---ELG-ADIVVGSA-QRFGVPMGYGGPHAAFLAT---SQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRR 413 (985)
Q Consensus 343 -~~~---~~G-aDi~v~s~-k~lg~P~~~GGP~~G~l~~---~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irr 413 (985)
+.. ..+ -+++++|. |.|+.| |-.+|++++ +++.++.+-.. + ....+
T Consensus 226 ~~~~~~~~~~~~~i~~~s~sK~~~~~----G~riG~~~~~~~~~~~~~~~~~~-----------------~----~~~~~ 280 (396)
T 2q7w_A 226 EGLRAFAAMHKELIVASSYSXNFGLY----NERVGACTLVAADSETVDRAFSQ-----------------M----KAAIR 280 (396)
T ss_dssp HHHHHHHHHCSCEEEEEECTTTTTCG----GGCCEEEEEECSSHHHHHHHHHH-----------------H----HHHHH
T ss_pred HHHHHHHhcCCcEEEEEecccccccc----ccccceEEEEcCCHHHHHHHHHH-----------------H----HHHHh
Confidence 011 122 35777886 766422 122588886 55433222000 0 00001
Q ss_pred cccCCCccchhHHHHHHHHHHHHHh-----CcchHHHHHHHHHHHHHHHHHHHhcCC---CeEEcCCCCcceEEE-ecCC
Q 001989 414 DKATSNICTAQALLANMAAMYAVYH-----GPEGLKTIAQRVHGLAGTFALGLKKLG---TVEVQGLPFFDTVKV-KCAD 484 (985)
Q Consensus 414 e~atsni~t~~~l~a~~aa~~l~~~-----g~~Gl~~i~~~~~~~a~~l~~~L~~~g---~~~~~~~~~~~~~~~-~~~~ 484 (985)
.+.+.++.....+..+++ ... -.+.++++.++..++.+++.+.|+++| ++++.. +...-+.+ ..+
T Consensus 281 --~~~~~~~~~~~~a~~~~l--~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~-~~~~~~~~~~~~- 354 (396)
T 2q7w_A 281 --ANYSNPPAHGASVVATIL--SNDALRAIWEQELTDMRQRIQRMRQLFVNTLQEKGANRDFSFII-KQNGMFSFSGLT- 354 (396)
T ss_dssp --TTTSSCCHHHHHHHHHHH--TSHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHTTCCSCCTHHH-HCCSSEEECCCC-
T ss_pred --hccCCCCcHHHHHHHHHh--cChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcceec-CCCceEEEecCC-
Confidence 111111112222221211 110 024567788888899999999999886 244321 11111222 222
Q ss_pred HHHHHHHHHHcCceeeeecCCeEEEEeccCCCHHHHHHHHHHHh
Q 001989 485 AHAIASAAYKIEMNLRVVDSNTVTASFDETTTLEDVDKLFIVFA 528 (985)
Q Consensus 485 ~~~v~~~L~~~GI~~~~~~~~~lris~t~~~t~edId~li~aL~ 528 (985)
...+.+.|.++||.+.. .+|++++.. |++|+++++++|+
T Consensus 355 ~~~~~~~l~~~gv~v~~----~~Ris~~~~-~~e~i~~~~~~l~ 393 (396)
T 2q7w_A 355 KEQVLRLREEFGVYAVA----SGRVNVAGM-TPDNMAPLCEAIV 393 (396)
T ss_dssp HHHHHHHHHHHCEECCT----TCEEEGGGC-CTTTHHHHHHHHH
T ss_pred HHHHHHHHHhcCeeecC----CceEEEeec-CHHHHHHHHHHHH
Confidence 55666777788998864 379999854 8999999999886
|
| >4e77_A Glutamate-1-semialdehyde 2,1-aminomutase; structural genomics, center for structural genomics of infec diseases, csgid, porphyrin biosynthesis; 2.00A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=99.22 E-value=5.2e-10 Score=129.51 Aligned_cols=275 Identities=11% Similarity=0.116 Sum_probs=151.9
Q ss_pred HHHHHHHHHHhcCCCCcceeeccchHHHHHHHHH-HhhhhcCCCCEEEEcC-CCChhHHHHHHHh---------hcCCCe
Q 001989 213 LLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAM-CNNIQKGKKKTFIIAS-NCHPQTIDICITR---------ADGFDI 281 (985)
Q Consensus 213 i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~-a~~~~~~~g~~Vlv~~-~~H~s~~~~~~~~---------a~~~gi 281 (985)
..++.+.++++++ +...+.+++|||.++++++. ++.+. ++++||+.+ ..|......+... ....++
T Consensus 95 ~~~la~~l~~~~~-~~~~v~~~~sGsea~~~al~~a~~~~--~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~ 171 (429)
T 4e77_A 95 EVKMAQLVTDLVP-TMDMVRMVNSGTEATMSAIRLARGYT--GRDKIIKFEGCYHGHADCLLVKAGSGALTLGQPNSPGV 171 (429)
T ss_dssp HHHHHHHHHHHST-TCSEEEEESSHHHHHHHHHHHHHHHH--CCCEEEEETTCCCC------------------CCCTTS
T ss_pred HHHHHHHHHhhCC-CCCEEEEeCcHHHHHHHHHHHHHHhh--CCCEEEEEcCccCCCChhhhhhcCCcccccCCCCcCCC
Confidence 3456678899987 55678899999988887764 33333 566777655 5565544322100 001111
Q ss_pred ------EEEEe---Cchhhhc-cC---CCEeEEEEEcC-CCCeeecc----HHHHHHHHHhCCcEEEEEecCcc-c--cC
Q 001989 282 ------KVVVS---DLKDIDY-KS---GDVCGVLVQYP-GTEGEVLD----YGDFIKNAHANGVKVVMATDLLA-L--TI 340 (985)
Q Consensus 282 ------~v~~v---~~~~l~~-l~---~~t~~V~v~~p-n~~G~v~d----i~~I~~~a~~~galliV~a~~~~-l--g~ 340 (985)
.+..+ |+++|++ +. +++++|++... +..|.+.+ +++|.++|+++|+++++|. .++ + |.
T Consensus 172 ~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~~~~~g~~~~~~~~l~~l~~l~~~~~~lli~DE-v~~g~r~g~ 250 (429)
T 4e77_A 172 PTDFAKHTLTCTYNDLASVRQAFEQYPQEVACIIVEPVAGNMNCIPPLPEFLPGLRALCDEFGALLIIDE-VMTGFRVAL 250 (429)
T ss_dssp CGGGGTTEEEECTTCHHHHHHHHHHSTTTEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHHTCEEEEEE-TTTBTTTBT
T ss_pred CCccCCceeecCCCCHHHHHHHHHhcCCCEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEec-cccCcccCc
Confidence 22233 3456665 43 56777776543 45688887 9999999999999999953 333 1 11
Q ss_pred CCCCCccc--ceEEEecCccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCC
Q 001989 341 LKPPGELG--ADIVVGSAQRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATS 418 (985)
Q Consensus 341 l~~~~~~G--aDi~v~s~k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~ats 418 (985)
......+| .|+++. +|.|++ |-.+|++.+++++++.+... ...+ ..+|.
T Consensus 251 ~~~~~~~~~~pdi~t~-sK~~~~-----G~~~G~~~~~~~~~~~l~~~----------~~~~-------------~~~t~ 301 (429)
T 4e77_A 251 AGAQDYYHVIPDLTCL-GKIIGG-----GMPVGAFGGRREVMNALAPT----------GPVY-------------QAGTL 301 (429)
T ss_dssp TCHHHHTTCCCSEEEE-EGGGGT-----TSCCEEEEECHHHHTTBTTT----------SSBC-------------C--CC
T ss_pred chHHHhcCCCCCeeee-cccccC-----CCCeEEEEECHHHHHHhccC----------CCcc-------------ccCCC
Confidence 11111233 477533 388852 33468888999888766310 0000 01121
Q ss_pred CccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcC----CCeEEcCCCCcceEEEecCC----------
Q 001989 419 NICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKL----GTVEVQGLPFFDTVKVKCAD---------- 484 (985)
Q Consensus 419 ni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~----g~~~~~~~~~~~~~~~~~~~---------- 484 (985)
+. ++.+..+..++ +..+.. +++.++..++.+++++.|+++ + +.........-+.+..++
T Consensus 302 ~~-~~~~~aaa~aa--l~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 374 (429)
T 4e77_A 302 SG-NPIAMAAGFAC--LTEISQ---VGVYETLTELTDSLATGLRHAAKEEN-IPLVVNHVGGMFGLFFTNADTVTCYQDV 374 (429)
T ss_dssp CC-CHHHHHHHHHH--HHHHTS---TTHHHHHHHHHHHHHHHHHHHHHHTT-CCCEEEEETTEEEEECCSSSCCCSHHHH
T ss_pred CC-CHHHHHHHHHH--HHHHHh---cCHHHHHHHHHHHHHHHHHHHHHhCC-CceEEEEeeeEEEEEEccCccccccccc
Confidence 11 11122222222 244433 345556666777777777653 3 211000001112232221
Q ss_pred -------HHHHHHHHHHcCceeeeecCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 485 -------AHAIASAAYKIEMNLRVVDSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 485 -------~~~v~~~L~~~GI~~~~~~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
..++.+.|.++||.+.......+ ++...+|+||+|+++++|.+
T Consensus 375 ~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~~--~~~~~~t~e~i~~~l~~l~~ 424 (429)
T 4e77_A 375 MNCDVERFKRFFHLMLEEGVYLAPSAFEAG--FMSLAHSNEDIQKTVNAARR 424 (429)
T ss_dssp HTSCHHHHHHHHHHHHHTTEECCSSTTSCE--ECCTTCCHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHCCeEEeecCCCCE--EEeccCCHHHHHHHHHHHHH
Confidence 37899999999998876433444 45678899999999999874
|
| >2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; 2.30A {Pseudomonas stutzeri} | Back alignment and structure |
|---|
Probab=99.21 E-value=1.3e-09 Score=127.27 Aligned_cols=272 Identities=11% Similarity=0.059 Sum_probs=150.0
Q ss_pred HHHHHHHHHhcCCCCcceeeccchHHHHHHHHHH-hhhhcCCCCEEEEcCCCCh-hHHHHHHHh------hcCCCeE---
Q 001989 214 LNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMC-NNIQKGKKKTFIIASNCHP-QTIDICITR------ADGFDIK--- 282 (985)
Q Consensus 214 ~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a-~~~~~~~g~~Vlv~~~~H~-s~~~~~~~~------a~~~gi~--- 282 (985)
.++.+.++++++ +..++.+++||+.++++++.+ +.+. ++++||+.+..|+ .....+... ....|+.
T Consensus 100 ~~la~~l~~~~~-~~~~v~~~~gg~eA~~~al~~ar~~~--~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~g~~~~~ 176 (453)
T 2cy8_A 100 VRWAERIVAAFP-SIRKLRFTGSGTETTLLALRVARAFT--GRRMILRFEGHYHGWHDFSASGYNSHFDGQPAPGVLPET 176 (453)
T ss_dssp HHHHHHHHHHCT-TCSEEEEESCHHHHHHHHHHHHHHHH--CCCEEEEECC----------------------------C
T ss_pred HHHHHHHHhhCC-CCCEEEEeCCHHHHHHHHHHHHHHhh--CCCEEEEEcCCcCCCchhhHhhcCCccCCCcCCCCCccc
Confidence 345567777775 556788999999888877754 2234 4567777775444 332221100 0012332
Q ss_pred ---EEEe---Cchhhhc-cC---CCEeEEEEEcC-CCCeeecc----HHHHHHHHHhCCcEEEEEecCccccCC-CCCC-
Q 001989 283 ---VVVS---DLKDIDY-KS---GDVCGVLVQYP-GTEGEVLD----YGDFIKNAHANGVKVVMATDLLALTIL-KPPG- 345 (985)
Q Consensus 283 ---v~~v---~~~~l~~-l~---~~t~~V~v~~p-n~~G~v~d----i~~I~~~a~~~galliV~a~~~~lg~l-~~~~- 345 (985)
+..+ |+++|++ +. +++++|++... |.+|.+.+ +++|.++|+++|+++++| +.++ |+. ....
T Consensus 177 ~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~~~~tG~~~~~~~~l~~l~~l~~~~g~~lI~D-Ev~~-g~~~g~~~~ 254 (453)
T 2cy8_A 177 TANTLLIRPDDIEGMREVFANHGSDIAAFIAEPVGSHFGVTPVSDSFLREGAELARQYGALFILD-EVIS-GFRVGNHGM 254 (453)
T ss_dssp GGGEEEECTTCHHHHHHHHHHHGGGEEEEEECSSEHHHHTEECCHHHHHHHHHHHHHTTCEEEEE-CTTT-TTTTCTTHH
T ss_pred cCceeecCCCCHHHHHHHHHhcCCCEEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEe-cCcc-ccccCchhh
Confidence 3333 3456666 54 47777776543 45898877 999999999999999995 3444 331 1111
Q ss_pred --cc--cceEEEecCccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCcc
Q 001989 346 --EL--GADIVVGSAQRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNIC 421 (985)
Q Consensus 346 --~~--GaDi~v~s~k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~ 421 (985)
.+ ..|+++. +|.|++ |..+|++++++++++.+..... + . + ...+|.+.
T Consensus 255 ~~~~~~~~di~s~-sK~l~~-----G~~~G~v~~~~~~~~~l~~~~~-------~-~-~------------~~~~t~~~- 306 (453)
T 2cy8_A 255 QALLDVQPDLTCL-AKASAG-----GLPGGILGGREDVMGVLSRGSD-------R-K-V------------LHQGTFTG- 306 (453)
T ss_dssp HHHHTCCCSEEEE-EGGGGT-----TSSCEEEEECHHHHTTSSSCC------------------------------CCC-
T ss_pred hHHhCCCCcEEEE-ChhhhC-----CcceEEEechHHHHHHhccccC-------C-C-c------------eeCCCCCC-
Confidence 12 3587633 388852 3347899999988877632100 0 0 0 00112111
Q ss_pred chhHHHHHHHHHHHHH-hCcchHHHHHHHHHHHHHHHHHHHhcC----CCe-E-EcCCCCcceEEEec-----C------
Q 001989 422 TAQALLANMAAMYAVY-HGPEGLKTIAQRVHGLAGTFALGLKKL----GTV-E-VQGLPFFDTVKVKC-----A------ 483 (985)
Q Consensus 422 t~~~l~a~~aa~~l~~-~g~~Gl~~i~~~~~~~a~~l~~~L~~~----g~~-~-~~~~~~~~~~~~~~-----~------ 483 (985)
++....+..++ +.. + . +++.++..++.+++++.|+++ + + . +.+...+-.+.+.. .
T Consensus 307 n~~~~aa~~aa--l~~~~-~---~~~~~~~~~~~~~l~~~L~~~~~~~~-~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~ 379 (453)
T 2cy8_A 307 NPITAAAAIAA--IDTIL-E---DDVCAKINDLGQFAREAMNHLFARKG-LNWLAYGRFSGFHLMPGLPPNTTDTGSITR 379 (453)
T ss_dssp CHHHHHHHHHH--HHHHH-H---TTHHHHHHHHHHHHHHHHHHHHHHTT-CCEEEECCTTEEEEEETSCTTCCCCHHHHT
T ss_pred CHHHHHHHHHH--HHHHh-h---hhHHHHHHHHHHHHHHHHHHHHhhCC-CcEEEEEeeeEEEEEEeccccccccccccc
Confidence 11112222222 233 3 3 345667777888888888764 4 3 1 21211121222321 1
Q ss_pred ------C---HHHHHHHHHHcCceeeeecCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 484 ------D---AHAIASAAYKIEMNLRVVDSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 484 ------~---~~~v~~~L~~~GI~~~~~~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
+ ..++.+.|.++||.++. .+.++ ++..+|++||++++++|.+
T Consensus 380 ~~~~~~~~~~~~~l~~~l~~~Gv~v~~--~~~~~--l~~~~t~~~i~~~l~~l~~ 430 (453)
T 2cy8_A 380 AEVARPDVKMIAAMRMALILEGVDIGG--RGSVF--LSAQHEREHVEHLVTTFDR 430 (453)
T ss_dssp TCSCCCCHHHHHHHHHHHHHTTEECBT--TTEEE--CCTTCCHHHHHHHHHHHHH
T ss_pred cccccccHHHHHHHHHHHHHCCeEEeC--CCCEE--eeccCCHHHHHHHHHHHHH
Confidence 1 56788999999998853 24444 5678999999999999974
|
| >3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance, microev0lution, integrated approach, chlorophyll biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus pcc 6301} SCOP: c.67.1.4 PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A* 3usf_A* 2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=5e-10 Score=129.58 Aligned_cols=273 Identities=13% Similarity=0.156 Sum_probs=155.4
Q ss_pred HHHHHHHHHhcCCCCcceeeccchHHHHHHHH-HHhhhhcCCCCEEEEcC-CCChhHHHHH-------HHh--hcCCCe-
Q 001989 214 LNFQTMIADLTGLPMSNASLLDEGTAAAEAMA-MCNNIQKGKKKTFIIAS-NCHPQTIDIC-------ITR--ADGFDI- 281 (985)
Q Consensus 214 ~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~-~a~~~~~~~g~~Vlv~~-~~H~s~~~~~-------~~~--a~~~gi- 281 (985)
.++.+.++++++ +..++.+++|||.++++++ ++.... ++++||+.+ ..|......+ ... ....|+
T Consensus 95 ~~la~~l~~~~~-~~~~v~~~~ggsea~~~al~~a~~~~--~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (427)
T 3fq8_A 95 NVLAEMVNDAVP-SIEMVRFVNSGTEACMAVLRIMRAYT--GRDKIIKFEGCYHGHADMFLVKAGSGVATLGLPSSPGVP 171 (427)
T ss_dssp HHHHHHHHHHST-TCSEEEEESSHHHHHHHHHHHHHHHH--CCCEEEEEETCCCCSCGGGCSSCCTHHHHHTCCSCSSSC
T ss_pred HHHHHHHHHhCC-CCCEEEEeCCHHHHHHHHHHHHHHhh--CCCEEEEECCCcCCCCHHHHHhcCCcccccCCCCCCCCC
Confidence 456678899987 5667889999998888777 344334 457777655 4454322111 000 001111
Q ss_pred -----EEEEe---Cchhhhc-cC---CCEeEEEEEcC-CCCeeecc----HHHHHHHHHhCCcEEEEEecCccccC-CCC
Q 001989 282 -----KVVVS---DLKDIDY-KS---GDVCGVLVQYP-GTEGEVLD----YGDFIKNAHANGVKVVMATDLLALTI-LKP 343 (985)
Q Consensus 282 -----~v~~v---~~~~l~~-l~---~~t~~V~v~~p-n~~G~v~d----i~~I~~~a~~~galliV~a~~~~lg~-l~~ 343 (985)
.+..+ |+++|++ +. +++++|++..+ +..|.+.+ +++|.++|+++|+++++| +.++ |+ ...
T Consensus 172 ~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~D-Ev~~-g~~~g~ 249 (427)
T 3fq8_A 172 KKTTANTLTTPYNDLEAVKALFAENPGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFD-EVIT-GFRIAY 249 (427)
T ss_dssp HHHHTTEEEEETTCHHHHHHHHHHSTTTEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHTTCEEEEE-CTTT-BTTTBT
T ss_pred CcccCceeecCCCCHHHHHHHHHhCCCCEEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEe-cccc-ccccCc
Confidence 12233 4566666 43 36888877655 56888888 999999999999999995 3333 22 100
Q ss_pred ---CCccc--ceEEEecCccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCC
Q 001989 344 ---PGELG--ADIVVGSAQRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATS 418 (985)
Q Consensus 344 ---~~~~G--aDi~v~s~k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~ats 418 (985)
...+| .|+++.+ |+|++ |=.+|++.+++++++.+... .. + ...+|.
T Consensus 250 ~~~~~~~~~~~di~t~s-K~~~~-----G~~~G~~~~~~~~~~~~~~~----------~~-~------------~~~~t~ 300 (427)
T 3fq8_A 250 GGVQEKFGVTPDLTTLG-KIIGG-----GLPVGAYGGKREIMQLVAPA----------GP-M------------YQAGTL 300 (427)
T ss_dssp THHHHHTTCCCSEEEEC-GGGGT-----TSSCEEEEECHHHHTTBTTT----------SS-B------------CCCCTT
T ss_pred chhhHhcCCCCChhhhh-hhhhC-----CcceEEEEEcHHHHHhhccC----------CC-c------------cccCCC
Confidence 01233 4765444 88862 22367888999888766310 00 0 011222
Q ss_pred CccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcC----CCeEEcCCCCcceEEEecC-----------
Q 001989 419 NICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKL----GTVEVQGLPFFDTVKVKCA----------- 483 (985)
Q Consensus 419 ni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~----g~~~~~~~~~~~~~~~~~~----------- 483 (985)
+. ++.+..+..++ +..+..+ ++.++..++.+++++.|+++ + +.........-+.+...
T Consensus 301 ~~-~~~~~aa~~aa--l~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 373 (427)
T 3fq8_A 301 SG-NPLAMTAGIKT--LELLRQP---GTYEYLDQITKRLSDGLLAIAQETG-HAACGGQVSGMFGFFFTEGPVHNYEDAK 373 (427)
T ss_dssp TT-CHHHHHHHHHH--HHHHTST---THHHHHHHHHHHHHHHHHHHHHHTT-CCCEEEEETTEEEEESSSCCCCSHHHHT
T ss_pred Cc-CHHHHHHHHHH--HHHHHhc---CHHHHHHHHHHHHHHHHHHHHHhCC-CCeEEEEeeeEEEEEEecCccccccccc
Confidence 11 11122222222 2444333 45566667777777777653 2 11000000111222221
Q ss_pred --C---HHHHHHHHHHcCceeeeecCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 484 --D---AHAIASAAYKIEMNLRVVDSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 484 --~---~~~v~~~L~~~GI~~~~~~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
+ ..++.+.|.++||.+..... -|+++...+|+|||++++++|.+
T Consensus 374 ~~~~~~~~~l~~~l~~~Gi~v~~~~~--~r~~~~~~~t~e~i~~~l~~l~~ 422 (427)
T 3fq8_A 374 KSDLQKFSRFHRGMLEQGIYLAPSQF--EAGFTSLAHTEEDIDATLAAART 422 (427)
T ss_dssp TSCHHHHHHHHHHHHHTTEECCSSTT--SCEECCTTCCHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHCCcEEecCCC--CCEEeeCcCCHHHHHHHHHHHHH
Confidence 1 46788999999998875332 26667788999999999999874
|
| >2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism; HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2 PDB: 2c44_A 2v1p_A* 2v0y_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=1.1e-10 Score=136.80 Aligned_cols=270 Identities=14% Similarity=0.083 Sum_probs=156.0
Q ss_pred HHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCC-----C----CEEEEcCCCC-hhHHHHHHHhhcCCCeE
Q 001989 213 LLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGK-----K----KTFIIASNCH-PQTIDICITRADGFDIK 282 (985)
Q Consensus 213 i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~-----g----~~Vlv~~~~H-~s~~~~~~~~a~~~gi~ 282 (985)
+.++++.+|+++|.+ ++.+++|||.+.++++.+.. . + | |+|+++ ..| +++...+.. .|..
T Consensus 76 ~~~l~~~la~~~~~~--~v~~t~~gt~A~~~al~~~~-~--~~~~~~G~~~~d~Ii~~-~~h~~t~~~~~~~----~~~~ 145 (467)
T 2oqx_A 76 YYALAESVKNIFGYQ--YTIPTHQGRGAEQIYIPVLI-K--KREQEKGLDRSKMVAFS-NYFFDTTQGHSQI----NGCT 145 (467)
T ss_dssp HHHHHHHHHHHHCCS--EEEEEC--CCSHHHHHHHHH-H--HHHHHHCCCTTTCEEEE-SSCCHHHHHHHHH----TTCE
T ss_pred hHHHHHHHHHHhCcC--cEEEcCCcHHHHHHHHHHHh-c--cccccCCCCccceEEec-ccccccchhhhhc----cCcc
Confidence 345788999999975 47888899887777765543 2 3 5 888877 567 333333322 1222
Q ss_pred EEE------------------eCchhhhc-cC----CCEeEEEEEcC-CCC-eee---ccHHHHHHHHHhCCcEEEEEec
Q 001989 283 VVV------------------SDLKDIDY-KS----GDVCGVLVQYP-GTE-GEV---LDYGDFIKNAHANGVKVVMATD 334 (985)
Q Consensus 283 v~~------------------v~~~~l~~-l~----~~t~~V~v~~p-n~~-G~v---~di~~I~~~a~~~galliV~a~ 334 (985)
+.. +|+++|++ ++ ++|++|++.+| |.+ |.+ +++++|+++|+++|+++++|+
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~i~~~~~~~~~~vi~~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~D~- 224 (467)
T 2oqx_A 146 VRNVYIKEAFDTGVRYDFKGNFDLEGLERGIEEVGPNNVPYIVATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVMDS- 224 (467)
T ss_dssp EEECBCTTTTCTTSCCTTTTCBCHHHHHHHHHHHCGGGCCCEEEESSBCGGGCBCCCHHHHHHHHHHHHHTTCCEEEEC-
T ss_pred eeeccccccccCCCCCCccCCcCHHHHHHHHHhcCCCceeEEEEeccccCCCCccCCHHHHHHHHHHHHHcCCEEEEEc-
Confidence 221 23456666 64 47999999987 555 765 468999999999999999962
Q ss_pred Cccc-----------cCCC-CCCc------ccceEEEecC-ccccccCCCCCCcEEEEEEchh-hHh---cCCCce-eee
Q 001989 335 LLAL-----------TILK-PPGE------LGADIVVGSA-QRFGVPMGYGGPHAAFLATSQE-YKR---MMPGRI-VGV 390 (985)
Q Consensus 335 ~~~l-----------g~l~-~~~~------~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~-~~~---~lp~~~-vG~ 390 (985)
..+. +... ++.. .++|+++.+. |.++.|. .|+++++++ +++ .+.... .+
T Consensus 225 a~~~e~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~~s~sK~~g~~~------Gg~~~~~~~~~~~~~~~~~~~~~~~- 297 (467)
T 2oqx_A 225 ARFAENAYFIKQREAEYKDWTIEQITRETYKYADMLAMSAKKDAMVPM------GGLLCMKDDSFFDVYTECRTLCVVQ- 297 (467)
T ss_dssp TTHHHHHHHHHHHCGGGTTSCHHHHHHHHGGGCSEEEEESSSTTCCSS------CEEEEECSGGGHHHHHHHHHHHHHT-
T ss_pred hhhhhhhhhcccccccccCccHHHHhhhhhccCCeEEEecccccCCCC------ceEEEecChhHHHHHHHHHHhhhcc-
Confidence 1222 1111 1222 2489888887 8776442 267777655 332 221000 00
Q ss_pred eecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEc
Q 001989 391 SIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQ 470 (985)
Q Consensus 391 t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~ 470 (985)
.+. ...++. ...++.++..++ ..++. ++..++..++++++++.|+++| +++.
T Consensus 298 ----~~~---------------~~~~~~---~~~~~~al~~~l-~~~~~----~~~~~~~~~~~~~l~~~L~~~~-~~~~ 349 (467)
T 2oqx_A 298 ----EGF---------------PTYGGL---EGGAMERLAVGL-YDGMN----LDWLAYRIAQVQYLVDGLEEIG-VVCQ 349 (467)
T ss_dssp ----TSS---------------CCCCCC---CHHHHHHHHHHH-HHTTC----HHHHHHHHHHHHHHHHHHHHTT-CCEE
T ss_pred ----CCc---------------ccccch---hhhHHHHHHHhh-Hhhhh----HHHHHHHHHHHHHHHHHHHHCC-Ceee
Confidence 000 001111 111221211111 11111 1233445678899999998885 7655
Q ss_pred CCCCcceEEEec----CC-------HHHHHHHH-HHcCceeeeec-----------------CCeEEEEeccC-CCHHHH
Q 001989 471 GLPFFDTVKVKC----AD-------AHAIASAA-YKIEMNLRVVD-----------------SNTVTASFDET-TTLEDV 520 (985)
Q Consensus 471 ~~~~~~~~~~~~----~~-------~~~v~~~L-~~~GI~~~~~~-----------------~~~lris~t~~-~t~edI 520 (985)
+.....+.+.+ ++ +.++.++| .++||.+.... .+.+|++++.. +|++||
T Consensus 350 -~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~~~~~~~~~~~~~~~~g~~~~~~~~~iRl~~~~~~~t~e~i 428 (467)
T 2oqx_A 350 -QAGGHAAFVDAGKLLPHIPADQFPAQALACELYKVAGIRAVEIGSFLLGRDPKTGKQLPCPAELLRLTIPRATYTQTHM 428 (467)
T ss_dssp -EECSSCEEEEHHHHSTTSCGGGCHHHHHHHHHHHHHCEECEEESHHHHCBCTTTCSBCCCSCCEEEECCCTTTSCHHHH
T ss_pred -cCCceEEEEechhhcccCCcccccHHHHHHHHHHhcCceecccccccccccccccccccCccCeEEEEecCCCCCHHHH
Confidence 21112233333 11 34568888 88899875421 26899999998 999999
Q ss_pred HHHHHHHhC
Q 001989 521 DKLFIVFAG 529 (985)
Q Consensus 521 d~li~aL~~ 529 (985)
++++++|.+
T Consensus 429 ~~~~~~l~~ 437 (467)
T 2oqx_A 429 DFIIEAFKH 437 (467)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999974
|
| >2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum pernix} PDB: 2zsl_A* 2zsm_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=3e-10 Score=131.72 Aligned_cols=274 Identities=12% Similarity=0.146 Sum_probs=156.5
Q ss_pred HHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHH-hhhhcCCCCEEEEcCC-CChhHHHHHH-------Hh--hcCCCe
Q 001989 213 LLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMC-NNIQKGKKKTFIIASN-CHPQTIDICI-------TR--ADGFDI 281 (985)
Q Consensus 213 i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a-~~~~~~~g~~Vlv~~~-~H~s~~~~~~-------~~--a~~~gi 281 (985)
..++++.++++++ ...++.+++|||.++++++.+ +.+. ++++||+.+. .|......+. .+ -...|+
T Consensus 98 ~~~l~~~la~~~~-~~~~v~~~~sgseA~~~al~~ar~~~--~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~p~~~g~ 174 (434)
T 2epj_A 98 EVLLAEKILGYVK-RGGMIRFVNSGTEATMTAIRLARGYT--GRDLILKFDGCYHGSHDAVLVAAGSAAAHYGVPTSAGV 174 (434)
T ss_dssp HHHHHHHHHHHHC-TTCEEEEESSHHHHHHHHHHHHHHHH--CCCEEEEEETCCCCSSGGGSEECC------CEESSTTC
T ss_pred HHHHHHHHHHhCC-CCCEEEEeCCHHHHHHHHHHHHHHhh--CCCeEEEEcCCcCCCCHHHHHhcCCCccccCCCCCCCC
Confidence 4456788888884 345688999999888877754 2244 5677776664 4442221110 00 001232
Q ss_pred ------EEEEe---Cchhhhc-cC---CCEeEEEEEcC-CCCeeecc----HHHHHHHHHhCCcEEEEEecCccccCC-C
Q 001989 282 ------KVVVS---DLKDIDY-KS---GDVCGVLVQYP-GTEGEVLD----YGDFIKNAHANGVKVVMATDLLALTIL-K 342 (985)
Q Consensus 282 ------~v~~v---~~~~l~~-l~---~~t~~V~v~~p-n~~G~v~d----i~~I~~~a~~~galliV~a~~~~lg~l-~ 342 (985)
.+..+ |+++|++ +. +++++|++... +.+|.+.| +++|.++|+++|+++++| +..+ |+. .
T Consensus 175 ~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~~lI~D-Ev~~-g~~~g 252 (434)
T 2epj_A 175 PEAVARLTLVTPYNDVEALERVFAEYGDRIAGVIVEPVIANAGVIPPRREFLAALQRLSRESGALLILD-EVVT-GFRLG 252 (434)
T ss_dssp CHHHHTTEEEEETTCHHHHHHHHHHHGGGEEEEEECSSBCSSSCBCCCHHHHHHHHHHHHHHTCEEEEE-ETTT-TTTSS
T ss_pred CCcccCceEecCCCCHHHHHHHHHhCCCCEEEEEEeCCcCCCCccCCCHHHHHHHHHHHHHcCCEEEEE-cchh-ceeCC
Confidence 13333 4566766 54 46777776543 45899888 999999999999999995 3333 221 1
Q ss_pred CCC---cc--cceEEEecCccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccC
Q 001989 343 PPG---EL--GADIVVGSAQRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKAT 417 (985)
Q Consensus 343 ~~~---~~--GaDi~v~s~k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~at 417 (985)
... .+ ..|+++. +|.|++ |-| +|++++++++++.+... +.. + ..+|
T Consensus 253 ~~~~~~~~~~~~di~s~-sK~l~~----G~~-~G~v~~~~~~~~~l~~~---------~~~-~-------------~~~t 303 (434)
T 2epj_A 253 LEGAQGYFNIEGDIIVL-GKIIGG----GFP-VGAVAGSREVMSLLTPQ---------GKV-F-------------NAGT 303 (434)
T ss_dssp TTHHHHHHTCCCSEEEE-EGGGGT----TSS-CEEEEECHHHHTTBTTT---------SSB-C-------------CCCT
T ss_pred cchhhHHhCCCCCeeee-cchhcC----Ccc-eeeeeecHHHHHhhccC---------CCc-c-------------cCCC
Confidence 111 12 3687533 388862 223 68888998887765210 000 0 0112
Q ss_pred CCccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcC----CCeE--EcCCCCcceEEEec-C-------
Q 001989 418 SNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKL----GTVE--VQGLPFFDTVKVKC-A------- 483 (985)
Q Consensus 418 sni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~----g~~~--~~~~~~~~~~~~~~-~------- 483 (985)
.+. ++....+..+++ ..+.. +++.++..++.+++++.|+++ + +. +.+...+-.+.+.. +
T Consensus 304 ~~~-~~~~~aa~~a~l--~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~-~~~~~~~~g~~~~i~~~~~~~~~~~~~ 376 (434)
T 2epj_A 304 FNA-HPITMAAGLATL--KALEE---EPVYSVSREAAKALEEAASEVLDRTG-LPYTINRVESMMQLFIGVEEVSNAAQA 376 (434)
T ss_dssp TTT-CHHHHHHHHHHH--HHHHH---SCHHHHHHHHHHHHHHHHHHHHHHHT-CCEEEEEETTEEEEEETCSCCSSHHHH
T ss_pred CCc-CHHHHHHHHHHH--HHHHh---cCHHHHHHHHHHHHHHHHHHHHhhCC-CcEEEEEeeeEEEEEEeCCCcccchhc
Confidence 111 111222222222 33322 245667777888888888764 4 32 11111121222221 0
Q ss_pred ---C---HHHHHHHHHHcCceeeeecCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 484 ---D---AHAIASAAYKIEMNLRVVDSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 484 ---~---~~~v~~~L~~~GI~~~~~~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
. ..++.+.|.++||.+....... +.+...+|++|+|+++++|.+
T Consensus 377 ~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~--~~~~~~~t~e~i~~~l~~l~~ 426 (434)
T 2epj_A 377 RKADKKFYVKLHEEMLRRGVFIAPSNLEA--VFTGLPHQGEALEIAVEGLRS 426 (434)
T ss_dssp TTSCHHHHHHHHHHHHHTTEECCSSTTSC--EECCTTCSHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHCCeEEeccCCCc--EEEeccCCHHHHHHHHHHHHH
Confidence 1 5678899999999886543333 445678999999999999974
|
| >4h51_A Aspartate aminotransferase; ssgcid, structural genomics, seattle struc genomics center for infectious disease, aspartate aminotran transferase; HET: LLP; 1.85A {Leishmania major} | Back alignment and structure |
|---|
Probab=99.18 E-value=4.1e-10 Score=129.86 Aligned_cols=260 Identities=12% Similarity=0.074 Sum_probs=154.2
Q ss_pred CCCCEEEEcCCCCcccHHHHHHCCcE-EEEEcC-C-CCCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccc--cCHHH
Q 001989 678 HHRNVCIIPVSAHGTNPATAAMCGMK-IVSVGT-D-AKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYE--EGIDE 751 (985)
Q Consensus 678 ~~~~~IIv~~~~Hg~~~~~a~~~G~~-vv~v~~-d-~~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~--~di~e 751 (985)
+++|+|+++++.++.|....+..|++ |...+. + .++.+|.+.+.+.+....++++++++..| |++|... .++++
T Consensus 135 ~pgd~V~ip~P~w~~y~~i~~~aG~~~V~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~vll~~~p~NPtG~~~~~~~~~~ 214 (420)
T 4h51_A 135 AETTPIYLSDPTWPNHYGVVKAAGWKNICTYAYYDPKTVSLNFEGMKKDILAAPDGSVFILHQCAHNPTGVDPSQEQWNE 214 (420)
T ss_dssp TTTSCEEEEESCCTHHHHHHHHTTCCCEEEEECEEGGGTEECHHHHHHHHHHSCSSCEEEEESSSCTTTCCCCCHHHHHH
T ss_pred CCCCEEEEecCCchhHHHHHHHcCCeEEEeeccccccccCCCHHHHHHHHhccCCCcEEEEeCCCCCCCCCCCCHHHHHH
Confidence 47899999999998888888899987 444444 2 23678999999988766677888888778 6899985 36899
Q ss_pred HHHHHHHcCCEEEEEccccc-cccCCC-CC------CccC-CcEEEeCCcccccccCCCCCCceEEEEEcccccCcCC--
Q 001989 752 ICKIIHDNGGQVYMDGANMN-AQVGLT-SP------GYIG-ADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLP-- 820 (985)
Q Consensus 752 I~~la~~~galliVD~a~~~-~~~~l~-~p------g~~g-~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp-- 820 (985)
|+++|++++++++.|.++.. ..+... .+ .+.+ .=+++.|+.|+|+++ |+++|++++.........
T Consensus 215 i~~~~~~~~~~~~~D~~Y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~----G~RvG~~~~~~~~~~~~~~~ 290 (420)
T 4h51_A 215 IASLMLAKHHQVFFDSAYQGYASGSLDTDAYAARLFARRGIEVLLAQSFSKNMGLY----SERAGTLSLLLKDKTKRADV 290 (420)
T ss_dssp HHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCCEEEEECTTTSCCG----GGCEEEEEEECSCHHHHHHH
T ss_pred HHHHHHhcCceEeeehhhhhhccCCcccchHHHHhHHhhCceEEEEeccccccccc----cCceEEEEecccCHHHHHHH
Confidence 99999999999999988731 111110 00 0111 235677888988764 789999987644322110
Q ss_pred -CCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHH--HHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCee---
Q 001989 821 -SHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISY--TYIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPIL--- 893 (985)
Q Consensus 821 -~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~--a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~--- 893 (985)
...... .....++.+ ..|+.... ..+ ..+...-.+-++.+.++..++++.|.+.|++ +....
T Consensus 291 ~~~l~~~--------~r~~~s~~p--~~~a~~~~-~~l~d~~l~~~~~~~~~~m~~r~~~~R~~l~~~L~~~g~~~~~~~ 359 (420)
T 4h51_A 291 KSVMDSL--------IREEYTCPP--AHGARLAH-LILSNNELRKEWEAELSAMAERIRTMRRTVYDELLRLQTPGSWEH 359 (420)
T ss_dssp HHHHHHH--------HHTTTSSCC--HHHHHHHH-HHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCTH
T ss_pred HHHHHHh--------hhcccCcch--HHHHHHHH-HHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCe
Confidence 000000 000111221 11221110 000 0111111223455566677888889999976 32211
Q ss_pred ecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCCCCCCCEEEEeccCCCCHHHHHHHHccCChhHHHHh
Q 001989 894 FRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHR 973 (985)
Q Consensus 894 ~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~ 973 (985)
+....| .| . +. |.+.+. ++.|.++||++.. + -|||+.- .+.+.|++ ++++|.+++.+
T Consensus 360 i~~q~G-mF---~--~~------gls~e~-v~~L~e~~Vy~~~------~-gRis~Ag-l~~~ni~~--~a~aI~~vvr~ 416 (420)
T 4h51_A 360 VINQIG-MF---S--FL------GLSKAQ-CEYCQNHNIFITV------S-GRANMAG-LTHETALM--LAQTINDAVRN 416 (420)
T ss_dssp HHHCCS-SE---E--EC------CCCHHH-HHHHHHTTEECCT------T-CEEEGGG-CCHHHHHH--HHHHHHHHHC-
T ss_pred ecCCCc-eE---E--ec------CcCHHH-HHHHHhCCEEEcC------C-CEEEecc-CCHHHHHH--HHHHHHHHHHH
Confidence 111112 22 1 21 455554 5789999987531 2 2888753 57889999 88888888876
Q ss_pred hc
Q 001989 974 LK 975 (985)
Q Consensus 974 ~~ 975 (985)
++
T Consensus 417 i~ 418 (420)
T 4h51_A 417 VN 418 (420)
T ss_dssp --
T ss_pred hh
Confidence 54
|
| >3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class, PLP-dependent transferase-like, bacillus A csgid, porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus anthracis} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.16 E-value=1e-09 Score=127.26 Aligned_cols=274 Identities=15% Similarity=0.176 Sum_probs=156.0
Q ss_pred HHHHHHHHHhcCCCCcceeeccchHHHHHHHHHH-hhhhcCCCCEEEEcCCC-ChhHHHHHHHhh---------cCCCe-
Q 001989 214 LNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMC-NNIQKGKKKTFIIASNC-HPQTIDICITRA---------DGFDI- 281 (985)
Q Consensus 214 ~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a-~~~~~~~g~~Vlv~~~~-H~s~~~~~~~~a---------~~~gi- 281 (985)
.++.+.++++++ +...+.+++|||.++++++.+ +... ++++||+.+.. |......+.... ...++
T Consensus 98 ~~l~~~la~~~~-~~~~v~~~~sGsea~~~ai~~a~~~~--~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~ 174 (434)
T 3l44_A 98 VKFAKMLKEAMP-ALDKVRFVNSGTEAVMTTIRVARAYT--GRTKIMKFAGCYHGHSDLVLVAAGSGPSTLGTPDSAGVP 174 (434)
T ss_dssp HHHHHHHHHHCT-TCSEEEEESSHHHHHHHHHHHHHHHH--CCCEEEEETTCCCCSSGGGGBC-------CCCBSSTTCC
T ss_pred HHHHHHHHHhCC-CCCEEEEeCchHHHHHHHHHHHHHhh--CCCEEEEEcCccCCCcHHHHhhcCCcccccCCCCcCCCC
Confidence 356678889886 566788999999888877743 3333 67888886654 443322211000 00011
Q ss_pred -----EEEEe---Cchhhhc-cC---CCEeEEEEEcC-CCCeeecc----HHHHHHHHHhCCcEEEEEecCccccC-CCC
Q 001989 282 -----KVVVS---DLKDIDY-KS---GDVCGVLVQYP-GTEGEVLD----YGDFIKNAHANGVKVVMATDLLALTI-LKP 343 (985)
Q Consensus 282 -----~v~~v---~~~~l~~-l~---~~t~~V~v~~p-n~~G~v~d----i~~I~~~a~~~galliV~a~~~~lg~-l~~ 343 (985)
.+..+ |+++|++ +. +++++|++..+ +..|.+.+ +++|.++|+++|+++++| +... |+ ...
T Consensus 175 ~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~illI~D-Ev~~-g~~~g~ 252 (434)
T 3l44_A 175 QSIAQEVITVPFNNVETLKEALDKWGHEVAAILVEPIVGNFGIVEPKPGFLEKVNELVHEAGALVIYD-EVIT-AFRFMY 252 (434)
T ss_dssp HHHHTTEEEECTTCHHHHHHHHHHHGGGEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHTTTCEEEEE-CTTT-TTTSSS
T ss_pred CcCCCceEecCcccHHHHHHHHHhCCCCEEEEEEcCCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEe-cccc-ceeccc
Confidence 23333 3456665 53 56777777654 46788887 999999999999999995 3322 11 111
Q ss_pred C---Cccc--ceEEEecCccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCC
Q 001989 344 P---GELG--ADIVVGSAQRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATS 418 (985)
Q Consensus 344 ~---~~~G--aDi~v~s~k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~ats 418 (985)
. ..+| .|+++. +|.|+ ||-.+|++.+++++++.+.. ..+ + ...+|.
T Consensus 253 ~~~~~~~~~~~di~t~-sK~~~-----~G~~iG~~~~~~~i~~~~~~----------~~~-~------------~~~~t~ 303 (434)
T 3l44_A 253 GGAQDLLGVTPDLTAL-GKVIG-----GGLPIGAYGGKKEIMEQVAP----------LGP-A------------YQAGTM 303 (434)
T ss_dssp SCHHHHHTCCCSEEEE-EGGGG-----TTSSCEEEEECHHHHTTBTT----------TSS-B------------CCCCTT
T ss_pred cHHHHHcCCCCCeeeh-hhhhc-----CCcCeeeEEEcHHHHHhhcc----------CCC-c------------ccCCCC
Confidence 1 1123 466543 48885 23456788889988876521 000 0 011222
Q ss_pred CccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcC----CCeEEc-CCCCcceEEEec-----------
Q 001989 419 NICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKL----GTVEVQ-GLPFFDTVKVKC----------- 482 (985)
Q Consensus 419 ni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~----g~~~~~-~~~~~~~~~~~~----------- 482 (985)
+.. +.+..+..++ +..+.. +++.++..++.+++++.|+++ +.+... ....+-.+.+..
T Consensus 304 ~~~-~~a~aaa~aa--l~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 377 (434)
T 3l44_A 304 AGN-PASMASGIAC--LEVLQQ---EGLYEKLDELGATLEKGILEQAAKHNIDITLNRLKGALTVYFTTNTIEDYDAAQD 377 (434)
T ss_dssp TTC-HHHHHHHHHH--HHHHTS---TTHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEETTEEEEEESSSCCCSHHHHHH
T ss_pred CcC-HHHHHHHHHH--HHHHHc---ccHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEeeccEEEEEEecCcccchhhccc
Confidence 221 1112222222 233333 345566667777777777653 311111 111111222211
Q ss_pred CC---HHHHHHHHHHcCceeeeecCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 483 AD---AHAIASAAYKIEMNLRVVDSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 483 ~~---~~~v~~~L~~~GI~~~~~~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
++ ..++.+.|.++||.++....+.+|++ ..+|++|+|+++++|++
T Consensus 378 ~~~~~~~~~~~~l~~~Gv~v~~~~~~~~rl~--~~~t~e~i~~~l~~l~~ 425 (434)
T 3l44_A 378 TDGEMFGKFFKLMLQEGVNLAPSKYEAWFLT--TEHTKEDIEYTIEAVGR 425 (434)
T ss_dssp SCHHHHHHHHHHHHHTTEECCSSTTCCEECC--TTCCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHCCeEEeecCCCcEEEe--cccCHHHHHHHHHHHHH
Confidence 12 46788999999999876545667774 57899999999999974
|
| >3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of cofactors, prosthetic groups, and carriers, csgid, cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus anthracis str} SCOP: c.67.1.4 PDB: 3bs8_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=1.1e-09 Score=127.00 Aligned_cols=269 Identities=14% Similarity=0.139 Sum_probs=157.2
Q ss_pred HHHHHHHHHhcCCCCcceeeccchHHHHHHHHHH-hhhhcCCCCEEEEcC-CCChhHHHHHHHh---------hcCCCe-
Q 001989 214 LNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMC-NNIQKGKKKTFIIAS-NCHPQTIDICITR---------ADGFDI- 281 (985)
Q Consensus 214 ~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a-~~~~~~~g~~Vlv~~-~~H~s~~~~~~~~---------a~~~gi- 281 (985)
.++.+.++++++ +...+.+++|||.++++++.+ +... ++++||+.+ ..|......+... -...++
T Consensus 96 ~~l~~~la~~~~-~~~~v~~~~~Gsea~~~ai~~a~~~~--~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~ 172 (429)
T 3k28_A 96 NKLAKLVIERVP-SIEIVRMVNSGTEATMSALRLARGYT--GRNKILKFIGCYHGHGDSLLIKAGSGVATLGLPDSPGVP 172 (429)
T ss_dssp HHHHHHHHHHST-TCSEEEEESSHHHHHHHHHHHHHHHH--TCCEEEEEETCCCCSCGGGCSSCCTTC-----CCCTTCC
T ss_pred HHHHHHHHHhCC-CCCEEEEeCChHHHHHHHHHHHHHhh--CCCEEEEECCCcCCCcHHHHHhcCCcccccCCCCcCCCC
Confidence 356678888886 456788899999888877743 3333 567777654 5554443322100 000111
Q ss_pred -----EEEEe---Cchhhhc-cC---CCEeEEEEEcC-CCCeeecc----HHHHHHHHHhCCcEEEEEecCccccCCCCC
Q 001989 282 -----KVVVS---DLKDIDY-KS---GDVCGVLVQYP-GTEGEVLD----YGDFIKNAHANGVKVVMATDLLALTILKPP 344 (985)
Q Consensus 282 -----~v~~v---~~~~l~~-l~---~~t~~V~v~~p-n~~G~v~d----i~~I~~~a~~~galliV~a~~~~lg~l~~~ 344 (985)
.+..+ |+++|++ +. +++++|++..+ +..|.+.+ +++|.++|+++|+++++| +.+. |+ ..
T Consensus 173 ~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~D-Ev~~-g~--~~ 248 (429)
T 3k28_A 173 EGVAKNTITVAYNDLESVKYAFEQFGDDIACVIVEPVAGNMGVVPPQPGFLEGLREVTEQNGALLIFD-EVMT-GF--RV 248 (429)
T ss_dssp HHHHTTEEEEETTCHHHHHHHHHHHGGGEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHHTCEEEEE-CTTT-TT--TS
T ss_pred CcccCceeecCCCCHHHHHHHHHhCCCCEEEEEEcCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEe-cccc-cc--cc
Confidence 22223 4456665 43 56777777654 56788888 999999999999999995 3332 22 11
Q ss_pred Cc------cc--ceEEEecCccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeeccccccccccccc
Q 001989 345 GE------LG--ADIVVGSAQRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKA 416 (985)
Q Consensus 345 ~~------~G--aDi~v~s~k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~a 416 (985)
+. +| .|+++. +|+|++ |-.+|++.+++++++.+... .+ + ...+
T Consensus 249 g~~~~~~~~~~~~di~t~-sK~~~~-----G~~iG~~~~~~~~~~~~~~~----------~~-~------------~~~~ 299 (429)
T 3k28_A 249 AYNCGQGYYGVTPDLTCL-GKVIGG-----GLPVGAYGGKAEIMRQVAPS----------GP-I------------YQAG 299 (429)
T ss_dssp STTHHHHHHTCCCSEEEE-CGGGGT-----TSCCEEEEECHHHHTTBTTT----------SS-B------------CCCC
T ss_pred CcchHHHHhCCCCceehh-hhhhcC-----CCCeEEEEEcHHHHhhhccC----------CC-c------------cccC
Confidence 21 23 566543 488852 34568899999888765210 00 0 0011
Q ss_pred CCCccchhHHHHHHHHHH-HHHhCcchHHHHHHHHHHHHHHHHHHHhcC----CCeEEcCCCCcceEEEec---------
Q 001989 417 TSNICTAQALLANMAAMY-AVYHGPEGLKTIAQRVHGLAGTFALGLKKL----GTVEVQGLPFFDTVKVKC--------- 482 (985)
Q Consensus 417 tsni~t~~~l~a~~aa~~-l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~----g~~~~~~~~~~~~~~~~~--------- 482 (985)
|.+. .++ +..+++. +..+ + +++.++..++.+++++.|+++ +.+..+. ....-+.+.+
T Consensus 300 t~~~---~~~-a~aaa~aal~~~--~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~ 370 (429)
T 3k28_A 300 TLSG---NPL-AMAAGYETLVQL--T--PESYVEFERKAEMLEAGLRKAAEKHGIPHHIN-RAGSMIGIFFTDEPVINYD 370 (429)
T ss_dssp TTTT---CHH-HHHHHHHHHHTC--C--HHHHHHHHHHHHHHHHHHHHHHHHTTCCCEEE-EETTEEEEESSSSCCCSHH
T ss_pred CCCC---ChH-HHHHHHHHHHHH--H--HHHHHHHHHHHHHHHHHHHHHHhhCCCCEEEE-eeccEEEEEEecCCccccc
Confidence 2211 111 2222221 2222 2 677788888888888888764 2111110 0011122221
Q ss_pred ----CC---HHHHHHHHHHcCceeeeecCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 483 ----AD---AHAIASAAYKIEMNLRVVDSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 483 ----~~---~~~v~~~L~~~GI~~~~~~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
++ ..++.+.|.++||.++....+.+|++ ..+|++|+|+++++|.+
T Consensus 371 ~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~r~~--~~~t~e~i~~~l~~l~~ 422 (429)
T 3k28_A 371 AAKSSNLQFFAAYYREMVEQGVFLPPSQFEGLFLS--TVHSDADIEATIAAAEI 422 (429)
T ss_dssp HHTTSCHHHHHHHHHHHHHTTEECCSSTTSCBCCC--TTCCHHHHHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHHHHCCeEEecCCCCCEEEE--CCCCHHHHHHHHHHHHH
Confidence 12 47888999999998876444667774 57899999999999874
|
| >2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.14 E-value=5.7e-10 Score=129.03 Aligned_cols=271 Identities=13% Similarity=0.141 Sum_probs=155.2
Q ss_pred HHHHHHHHHHhcCCCCcceeeccchHHHHHHHHH-HhhhhcCCCCEEEEcCCC-ChhHHHHHHHh-h--------cCCCe
Q 001989 213 LLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAM-CNNIQKGKKKTFIIASNC-HPQTIDICITR-A--------DGFDI 281 (985)
Q Consensus 213 i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~-a~~~~~~~g~~Vlv~~~~-H~s~~~~~~~~-a--------~~~gi 281 (985)
..++.+.++++++ +..++.+++||+.++++++. |+.+. ++++||+.+.. |......+... . ...|+
T Consensus 94 ~~~l~~~l~~~~~-~~~~v~~~~~g~ea~~~al~~ar~~~--~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~p~~~g~ 170 (424)
T 2e7u_A 94 EVALAKKVKRAYP-FVDLVRFVNSGTEATMSALRLARGYT--GRPYIVKFRGNYHGHADGLLVEAGSGALTLGVPSSAGV 170 (424)
T ss_dssp HHHHHHHHHHHCT-TCCEEEEESSHHHHHHHHHHHHHHHH--CCCEEEEETTCCCCCCGGGSEECCSSSCCBCEESSTTC
T ss_pred HHHHHHHHHHhCC-CCCEEEEeCCHHHHHHHHHHHHHHhh--CCCEEEEECCCcCCCcHHHHHhcCCcccccCCCCCCCC
Confidence 3456678889885 55678889999988887765 33344 45777766654 44222221000 0 01232
Q ss_pred ------EEEEe---Cchhhhc-cC---CCEeEEEEEcCC-CCeeecc----HHHHHHHHHhCCcEEEEEecCccccCC-C
Q 001989 282 ------KVVVS---DLKDIDY-KS---GDVCGVLVQYPG-TEGEVLD----YGDFIKNAHANGVKVVMATDLLALTIL-K 342 (985)
Q Consensus 282 ------~v~~v---~~~~l~~-l~---~~t~~V~v~~pn-~~G~v~d----i~~I~~~a~~~galliV~a~~~~lg~l-~ 342 (985)
.+..+ |+++|++ +. +++++|++...+ .+|.+.+ +++|.++ +++|+++++| +.++ |+. .
T Consensus 171 ~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l-~~~g~~lI~D-Ev~~-g~~~g 247 (424)
T 2e7u_A 171 PEEYAKLTLVLEYNDPEGLREVLKRRGEEIAAIIFEPVVGNAGVLVPTEDFLKALHEA-KAYGVLLIAD-EVMT-GFRLA 247 (424)
T ss_dssp CHHHHTTEEEECTTCHHHHHHHHHHHGGGEEEEEECSSBCTTSCBCCCHHHHHHHHHG-GGGTCEEEEE-CTTT-TTTSS
T ss_pred CCccCCceEeCCCCCHHHHHHHHHhCCCCEEEEEEeCCCCCCCCcCCCHHHHHHHHHH-HHcCCEEEEe-cCcc-ccccc
Confidence 23333 4566666 54 467766664322 3898887 9999999 9999999994 3444 321 1
Q ss_pred CC---Cccc--ceEEEecCccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccC
Q 001989 343 PP---GELG--ADIVVGSAQRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKAT 417 (985)
Q Consensus 343 ~~---~~~G--aDi~v~s~k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~at 417 (985)
.. ..+| .|+++. +|+|++ |-.+|++++++++++.+... +.. + ..+|
T Consensus 248 ~~~~~~~~~~~~di~s~-sK~l~~-----G~~~G~~~~~~~~~~~~~~~---------~~~-~-------------~~~t 298 (424)
T 2e7u_A 248 FGGATELLGLKPDLVTL-GKILGG-----GLPAAAYAGRREIMEKVAPL---------GPV-Y-------------QAGT 298 (424)
T ss_dssp TTHHHHHHTCCCSEEEE-CGGGGT-----TSSCEEEEECHHHHTTBTTT---------SSB-C-------------CCCT
T ss_pred hhHHHHHhCCCcchhhh-hhhhhC-----CcceEEEEEcHHHHhhhccc---------CCc-c-------------cCCC
Confidence 11 1223 577633 488862 22368888999888765210 000 0 0111
Q ss_pred CCccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcC----CCeE--EcCCCCcceEEEecCC-------
Q 001989 418 SNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKL----GTVE--VQGLPFFDTVKVKCAD------- 484 (985)
Q Consensus 418 sni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~----g~~~--~~~~~~~~~~~~~~~~------- 484 (985)
.+. ++.+..+..+++ ..+.. .+++.++..++.++++++|+++ | +. +.+.. .-+.+.++.
T Consensus 299 ~~~-~~~~~aaa~aal--~~~~~--~~~~~~~~~~~~~~l~~~L~~~~~~~~-~~~~~~~~g--~~~~i~~~~~~~~~~~ 370 (424)
T 2e7u_A 299 LSG-NPLAMAAGLATL--ELLEE--NPGYYAYLEDLGARLEAGLKEVLKEKG-LPHTVNRVG--SMITVFFTEGPVVTFQ 370 (424)
T ss_dssp TCS-CHHHHHHHHHHH--HHHHH--CTHHHHHHHHHHHHHHHHHHHHHHHTT-CCCEEEEET--TEEEEESSSSCCCSHH
T ss_pred CCC-CHHHHHHHHHHH--HHHHh--ccHHHHHHHHHHHHHHHHHHHHHHhCC-CceEEEeec--eEEEEEEeCCCCcchh
Confidence 111 111122222222 33211 1456777888888888888764 4 31 11111 123333321
Q ss_pred ---------HHHHHHHHHHcCceeeeecCCeEEEEeccCCCHHHHHHHHHHHh
Q 001989 485 ---------AHAIASAAYKIEMNLRVVDSNTVTASFDETTTLEDVDKLFIVFA 528 (985)
Q Consensus 485 ---------~~~v~~~L~~~GI~~~~~~~~~lris~t~~~t~edId~li~aL~ 528 (985)
..++.+.|.++||.+.......+ .+...+|++|+++++++|.
T Consensus 371 ~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~--~~~~~~t~~~i~~~l~~l~ 421 (424)
T 2e7u_A 371 DARRTDTELFKRFFHGLLDRGIYWPPSNFEAA--FLSVAHREEDVEKTLEALR 421 (424)
T ss_dssp HHTTSCHHHHHHHHHHHHTTTEECCSSSSSCE--ECCTTCCHHHHHHHHHHHH
T ss_pred hhcccCHHHHHHHHHHHHHCCeEEeccCCCce--EeeccCCHHHHHHHHHHHH
Confidence 45788999999998865433344 4557899999999999986
|
| >2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG FUC BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB: 2hor_A* 1lk9_A* | Back alignment and structure |
|---|
Probab=99.12 E-value=2e-09 Score=124.71 Aligned_cols=268 Identities=12% Similarity=0.044 Sum_probs=165.3
Q ss_pred HHHHHHHHHhcC------CCCcceeeccchHHHHHHHHHHhh-------hhcCCCCEEEEcCCCChhHHHHHHHhhcCCC
Q 001989 214 LNFQTMIADLTG------LPMSNASLLDEGTAAAEAMAMCNN-------IQKGKKKTFIIASNCHPQTIDICITRADGFD 280 (985)
Q Consensus 214 ~e~q~~ia~L~g------~~~~~~sl~~~~ta~~ea~~~a~~-------~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~g 280 (985)
.++++.+|++++ .++.++.++.|++.++..++.++. . ++||+|+++.-.|+.+...++.. |
T Consensus 103 ~~lr~aia~~~~~~~~~~~~~~~iv~t~G~~~al~~~~~~l~~~~~~~~~--~~Gd~Vlv~~P~y~~~~~~~~~~----g 176 (427)
T 2hox_A 103 FELEKTIKELHEVVGNAAAKDRYIVFGVGVTQLIHGLVISLSPNMTATPD--APESKVVAHAPFYPVFREQTKYF----D 176 (427)
T ss_dssp HHHHHHHHHHHHHHTCBCCTTCEEEEESHHHHHHHHHHHHHSCCTTTCTT--SCCEEEEECSSCCHHHHHHHHHS----C
T ss_pred HHHHHHHHHHHHHhCCcCCCCCEEEEeCCHHHHHHHHHHHHhhccccccC--CCCCEEEEeCCCcccHHHHHHHc----C
Confidence 346667777775 567789999999988887776652 2 38899999999999999887642 4
Q ss_pred eEEE--EeCchhhhc-cCCCEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCCCCC--cccceEEEe
Q 001989 281 IKVV--VSDLKDIDY-KSGDVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKPPG--ELGADIVVG 354 (985)
Q Consensus 281 i~v~--~v~~~~l~~-l~~~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~~~~--~~GaDi~v~ 354 (985)
.+++ .+++++|++ +++++++|++++| |.+|.+.+ + + ++ +...+++ +... .-..+.. ..+.||+++
T Consensus 177 ~~~~~~~~d~~~l~~~~~~~~k~v~l~~p~NPtG~~~~-~-~---l~--~~~~i~d-~~~~-~~~~s~~~~~~~~~i~~~ 247 (427)
T 2hox_A 177 KKGYVWAGNAANYVNVSNPEQYIEMVTSPNNPEGLLRH-A-V---IK--GCKSIYD-MVYY-WPHYTPIKYKADEDILLF 247 (427)
T ss_dssp BTTEEEEEEGGGGTTCSCGGGEEEEEESSCTTTCCCCC-C-S---ST--TCEEEEE-CTTC-STTTSCCCSCBCCSEEEE
T ss_pred CeeeeecCCHHHHHHhhcCCceEEEEcCCCCCcccccH-H-H---Hc--CCCEEEe-eccc-CCCCCccccCCCceEEEE
Confidence 3332 346678887 7778999999998 78999988 3 2 33 4555553 2211 1001111 257899999
Q ss_pred cC-ccccccCCCCCCcEEEEEEc-hhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHH
Q 001989 355 SA-QRFGVPMGYGGPHAAFLATS-QEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAA 432 (985)
Q Consensus 355 s~-k~lg~P~~~GGP~~G~l~~~-~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa 432 (985)
|. |.++.| |--+|+++++ +++++++.. + +...+.++.+ ....+..++
T Consensus 248 S~SK~~g~~----G~RiG~~~~~~~~l~~~l~~--------------~------------~~~~~~~~~~-~~q~a~~~~ 296 (427)
T 2hox_A 248 TMSKFTGHS----GSRFGWALIKDESVYNNLLN--------------Y------------MTKNTEGTPR-ETQLRSLKV 296 (427)
T ss_dssp EHHHHTSCG----GGCCEEEEECCHHHHHHHHH--------------H------------HHHHTSSCCH-HHHHHHHHH
T ss_pred eChhcCCCC----CceEEEEEECCHHHHHHHHH--------------H------------HHhcCCCCCH-HHHHHHHHH
Confidence 98 876532 1226999994 777665410 0 0001111111 111122222
Q ss_pred HH--HHHh------CcchHHHHHHHHHHHHHHHHHHHhcCCCeEE--cC-C----------CCcce-EEEecCC-HHHHH
Q 001989 433 MY--AVYH------GPEGLKTIAQRVHGLAGTFALGLKKLGTVEV--QG-L----------PFFDT-VKVKCAD-AHAIA 489 (985)
Q Consensus 433 ~~--l~~~------g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~--~~-~----------~~~~~-~~~~~~~-~~~v~ 489 (985)
+- ..++ ..+=+++..++..++.+++.+.|+++.|+++ +. + +...- +.++++. ..++.
T Consensus 297 L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~p~~g~f~~~~~~~~~~~~~ 376 (427)
T 2hox_A 297 LKEVVAMVKTQKGTMRDLNTFGFKKLRERWVNITALLDQSDRFSYQELPQSEYCNYFRRMRPPSPSYAWVKCEWEEDKDC 376 (427)
T ss_dssp HHHHHHHHHHHTTSTTSHHHHHHHHHHHHHHHHHHHHTTSSSEECCCCCSCEEETTTTEEECCCCSEEEEEECSGGGCSH
T ss_pred hhcchhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHhCcCccccccccccccccccccCCCCceEEEEECCCcHHHHH
Confidence 20 1111 1223456677788889999999999833876 21 1 11111 2345553 45566
Q ss_pred HHHH-HcCceeeee-----cCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 490 SAAY-KIEMNLRVV-----DSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 490 ~~L~-~~GI~~~~~-----~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
+.|. ++||.+... .++.+|+|+. +++++|+++++.|..
T Consensus 377 ~~ll~~~gI~v~pg~~f~~~~~~~Ris~~--~~~e~l~~~l~~l~~ 420 (427)
T 2hox_A 377 YQTFQNGRINTQNGVGFEASSRYVRLSLI--KTQDDFDQLMYYLKD 420 (427)
T ss_dssp HHHHHHTTEECEEGGGGTSCTTEEEEECS--SCHHHHHHHHHHHHH
T ss_pred HHHHHHCCEEEcCCCccCCCCCEEEEEec--CCHHHHHHHHHHHHH
Confidence 6664 789987542 2578999998 488999998888863
|
| >4ao9_A Beta-phenylalanine aminotransferase; HET: PLP; 1.50A {Variovorax paradoxus} PDB: 4aoa_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=3.2e-09 Score=123.17 Aligned_cols=271 Identities=14% Similarity=0.186 Sum_probs=152.0
Q ss_pred HHHHHHHHhcCCCCcceeeccchHHHHHHHH-HHhhhhcCCCCEEEEcC-CCChhHHHHHH-HhhcCCCeEEEEeCch--
Q 001989 215 NFQTMIADLTGLPMSNASLLDEGTAAAEAMA-MCNNIQKGKKKTFIIAS-NCHPQTIDICI-TRADGFDIKVVVSDLK-- 289 (985)
Q Consensus 215 e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~-~a~~~~~~~g~~Vlv~~-~~H~s~~~~~~-~~a~~~gi~v~~v~~~-- 289 (985)
++.+.+++++.- ...+.+.++||.+.|+++ +|+.++ .+++||.-+ +-|........ .-..........++..
T Consensus 131 ~lae~l~~~~p~-~~~v~f~~SGsEA~e~AiklAr~~t--gr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~p~nd~ 207 (454)
T 4ao9_A 131 RLARLICERFPQ-IEQLRFTNSGTEANLMALTAALHFT--GRRKIVVFSGGYHGGVLGFGARPSPTTVPFDFLVLPYNDA 207 (454)
T ss_dssp HHHHHHHHHSTT-CSEEEEESSHHHHHHHHHHHHHHHH--TCCEEEEETTCBCSTTCBBSSSBCTTSCCSEEEEECTTCH
T ss_pred HHHHHHHHhCCC-CCEEEEeCchHHHHHHHHHHHHhcc--cCCeEEEEeCCcCCccccccccccCccCCCCcccCCCchH
Confidence 345678887742 234777889998888777 566565 567877655 55543322110 0001112344445543
Q ss_pred -hhhc-c---CCCEeEEEEEc-CCCCeeecc----HHHHHHHHHhCCcEEEEEecCccccCCCCCC---ccc--ceEEEe
Q 001989 290 -DIDY-K---SGDVCGVLVQY-PGTEGEVLD----YGDFIKNAHANGVKVVMATDLLALTILKPPG---ELG--ADIVVG 354 (985)
Q Consensus 290 -~l~~-l---~~~t~~V~v~~-pn~~G~v~d----i~~I~~~a~~~galliV~a~~~~lg~l~~~~---~~G--aDi~v~ 354 (985)
++++ + .+++++|++.- .+..|.+.+ +++|.++|+++|++||+| +.+. |-...-+ .+| .|+++
T Consensus 208 ~~l~~~l~~~~~~iAavIvEPv~g~~G~~~p~~~fL~~lr~lc~~~g~lLI~D-EV~t-GR~G~~~a~e~~gv~PDi~t- 284 (454)
T 4ao9_A 208 QTARAQIERHGPEIAVVLVEPMQGASGCIPGQPDFLQALRESATQVGALLVFD-EVMT-SRLAPHGLANKLGIRSDLTT- 284 (454)
T ss_dssp HHHHHHHHHTGGGEEEEEECSEESTTTCEECCHHHHHHHHHHHHHHTCEEEEE-CTTG-GGGSTTCHHHHHTCCCSEEE-
T ss_pred HHHHHHHhhcCCceEEEEeccccCCCCccCCchhhHHHHHHHHhhcCCEEEEE-CCCc-CCCccccchhccCCCCcEEE-
Confidence 3444 3 46788888753 266788876 999999999999999994 4443 4221111 233 38864
Q ss_pred cCccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHH-
Q 001989 355 SAQRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAM- 433 (985)
Q Consensus 355 s~k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~- 433 (985)
-+|.+++ |.| +|.+.+++++++.+.+.. +. +. ..+|-+ . .++ +.+|++
T Consensus 285 ~gK~lgg----G~P-iga~~~~~ei~~~~~~~~--------~~--~~------------h~~T~~--g-nPl-a~AAala 333 (454)
T 4ao9_A 285 LGKYIGG----GMS-FGAFGGRADVMALFDPRT--------GP--LA------------HSGTFN--N-NVM-TMAAGYA 333 (454)
T ss_dssp EEGGGGT----TSS-CEEEEECHHHHGGGCTTT--------CS--CC------------CCCTTT--T-CHH-HHHHHHH
T ss_pred eccccCC----CCc-ceeeeeHHHHHHHHhhcc--------CC--cc------------ccCCCC--C-CHH-HHHHHHH
Confidence 3477753 445 456678888887663210 10 00 112211 1 122 222222
Q ss_pred HHHHhCcchHHHHHHHHHHHHHHHHHHHhcC----CC-eEEcCCCCcceEEEe-----------cCC---HHHHHHHHHH
Q 001989 434 YAVYHGPEGLKTIAQRVHGLAGTFALGLKKL----GT-VEVQGLPFFDTVKVK-----------CAD---AHAIASAAYK 494 (985)
Q Consensus 434 ~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~----g~-~~~~~~~~~~~~~~~-----------~~~---~~~v~~~L~~ 494 (985)
-+..+.. +++.++..++.++|+++|+++ +- .++.+...+-.+-|. ..+ ...+...|.+
T Consensus 334 ~L~~l~~---~~~~~~~~~~g~~l~~~L~~l~~~~~~~~~vrg~G~m~gi~f~~~~~~~~~~~~~~d~~~~~~~~~~ll~ 410 (454)
T 4ao9_A 334 GLTKLFT---PEAAGALAERGEALRARLNALCANEGVAMQFTGIGSLMNAHFVQGDVRSSEDLAAVDGRLRQLLFFHLLN 410 (454)
T ss_dssp HHHHTSC---HHHHHHHHHHHHHHHHHHHHHHHHHTBSCEEEEETTEEEEESCCSCCCSGGGGTTCCHHHHHHHHHHHHH
T ss_pred HHHHHhc---cChhHHHHHHHHHHHHHHHHHHhhCCCCEEEeeeceEEEEEEecCCCCCHHHHHhhhHHHHHHHHHHHHH
Confidence 2355544 356677778888888888764 20 011100000001110 001 3567778889
Q ss_pred cCceeeeecCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 495 IEMNLRVVDSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 495 ~GI~~~~~~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
+||++.+ .+.+ .+...+|++|||+++++|++
T Consensus 411 ~Gv~~~p--~~~~--~~s~~~T~~dId~~l~al~~ 441 (454)
T 4ao9_A 411 EDIYSSP--RGFV--VLSLPLTDADIDRYVAAIGS 441 (454)
T ss_dssp TTEECCT--TCEE--ECCTTCCHHHHHHHHHHHHH
T ss_pred CCEEEcC--CCCE--EEeCCCCHHHHHHHHHHHHH
Confidence 9998864 2333 34556899999999999985
|
| >1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN acid, antiepileptic drug target; HET: PLP; 2.3A {Sus scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A* | Back alignment and structure |
|---|
Probab=99.07 E-value=3.4e-09 Score=124.46 Aligned_cols=267 Identities=13% Similarity=0.117 Sum_probs=154.9
Q ss_pred HHHHHhcCCCCcceeeccchHHHHHHHHH-Hhhhh----cC-----------------C---CCEEEEcC-CCChhHHHH
Q 001989 218 TMIADLTGLPMSNASLLDEGTAAAEAMAM-CNNIQ----KG-----------------K---KKTFIIAS-NCHPQTIDI 271 (985)
Q Consensus 218 ~~ia~L~g~~~~~~sl~~~~ta~~ea~~~-a~~~~----~~-----------------~---g~~Vlv~~-~~H~s~~~~ 271 (985)
+.++++++.+...+.++++||.+.++++. ++.+. ++ + +++||+.+ ..|......
T Consensus 117 ~~l~~~~~~~~~~v~f~~sGseA~~~Aik~a~~~~~~~~~~~~~~t~~~~~~~~~~~~~g~~r~~ii~~~~~yHg~~~~~ 196 (472)
T 1ohv_A 117 ESLLSVAPKGMSQLITMACGSCSNENAFKTIFMWYRSKERGQSAFSKEELETCMINQAPGCPDYSILSFMGAFHGRTMGC 196 (472)
T ss_dssp HTGGGGCCTTCCEEEEESSHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHTTCTTTSCCCEEEEETTCCCCSSHHH
T ss_pred HHHHHhCCCCcCEEEEeCCchhHHHHHHHHHHHHhhhhccCcccccccccccccccccccCCCCeEEEECCCcccccHHH
Confidence 34555664445568889999999998884 43221 11 2 37888766 566655555
Q ss_pred HHHhhc----CCCeE-----EEEe--------------------Cchhhhc-cCC------CEeEEEEEc-CCCCeeecc
Q 001989 272 CITRAD----GFDIK-----VVVS--------------------DLKDIDY-KSG------DVCGVLVQY-PGTEGEVLD 314 (985)
Q Consensus 272 ~~~~a~----~~gi~-----v~~v--------------------~~~~l~~-l~~------~t~~V~v~~-pn~~G~v~d 314 (985)
+..-.. ..+.. ...+ ++++|++ +++ ++++|++.. +|..|.+.+
T Consensus 197 ~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~vive~v~~~~G~~~~ 276 (472)
T 1ohv_A 197 LATTHSKAIHKIDIPSFDWPIAPFPRLKYPLEEFVKENQQEEARCLEEVEDLIVKYRKKKKTVAGIIVEPIQSEGGDNHA 276 (472)
T ss_dssp HHHCCSCHHHHTTSCCCCCCEECCCCCCSSGGGCHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECSSBCTTTCBCC
T ss_pred HhcCCCccccccCCCCCCCcccCCCcccCccccccccchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEcCCcCCCCCCCC
Confidence 422100 01111 1111 2345555 544 799888865 477999887
Q ss_pred ----HHHHHHHHHhCCcEEEEEecCcc-ccCCCC---CCccc----ceEEEecCccccccCCCCCCcEEEEEEchhhHhc
Q 001989 315 ----YGDFIKNAHANGVKVVMATDLLA-LTILKP---PGELG----ADIVVGSAQRFGVPMGYGGPHAAFLATSQEYKRM 382 (985)
Q Consensus 315 ----i~~I~~~a~~~galliV~a~~~~-lg~l~~---~~~~G----aDi~v~s~k~lg~P~~~GGP~~G~l~~~~~~~~~ 382 (985)
+++|.++|+++|+++++| +..+ +|.... ...+| .|+++.+ |.+ +|| |++. ++++. .
T Consensus 277 ~~~~l~~l~~l~~~~g~lli~D-Ev~~g~g~~g~~~~~~~~gv~~~~Di~t~s-K~~-----l~G---G~~~-~~~~~-~ 344 (472)
T 1ohv_A 277 SDDFFRKLRDISRKHGCAFLVD-EVQTGGGSTGKFWAHEHWGLDDPADVMTFS-KKM-----MTG---GFFH-KEEFR-P 344 (472)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEE-CTTTTTTTTSSSSGGGGGCCSSCCSEEEEC-GGG-----SSE---EEEE-CGGGS-C
T ss_pred CHHHHHHHHHHHHHhCCEEEEe-CcccCCCCCCCchhccccCCCCCCCEEEEc-ccc-----ccC---CccC-chhhc-c
Confidence 999999999999999995 3333 442211 12356 6876543 763 122 5654 54431 1
Q ss_pred CCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHh
Q 001989 383 MPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLK 462 (985)
Q Consensus 383 lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~ 462 (985)
+. + + ...+|.+. .+.+..+..+++ ..+..+ ++.++..++.++|+++|+
T Consensus 345 ~~-------------~-~------------~~~~T~~~-~~~~~aaa~aal--~~~~~~---~~~~~~~~~~~~l~~~L~ 392 (472)
T 1ohv_A 345 NA-------------P-Y------------RIFNTWLG-DPSKNLLLAEVI--NIIKRE---DLLSNAAHAGKVLLTGLL 392 (472)
T ss_dssp SS-------------S-S------------SSCCSSSS-CHHHHHHHHHHH--HHHHHT---THHHHHHHHHHHHHHHHH
T ss_pred cc-------------c-c------------cccCccCc-cHHHHHHHHHHH--HHHHhC---CHHHHHHHHHHHHHHHHH
Confidence 10 0 0 01122111 111222223333 333222 356777888888988887
Q ss_pred cC--C--C-eEEcCCCCcceEEEecCC---HHHHHHHHHHcCceeeeecCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 463 KL--G--T-VEVQGLPFFDTVKVKCAD---AHAIASAAYKIEMNLRVVDSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 463 ~~--g--~-~~~~~~~~~~~~~~~~~~---~~~v~~~L~~~GI~~~~~~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
++ + + +.-+. +...-+.+..++ +.++.++|.++||.+.....+.||++++..+|++|||+++++|.+
T Consensus 393 ~l~~~~~~~v~~~~-~~g~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~g~~~iRi~~~~~~t~e~i~~~~~~l~~ 466 (472)
T 1ohv_A 393 DLQARYPQFISRVR-GRGTFCSFDTPDESIRNKLISIARNKGVMLGGCGDKSIRFRPTLVFRDHHAHLFLNIFSD 466 (472)
T ss_dssp HHHHHCTTTCEEEE-EETTEEEEECSSHHHHHHHHHHHHHTTEECEEETTTEEEECCCTTCCHHHHHHHHHHHHH
T ss_pred HHHhhCCCcEEeec-CCceEEEEEeCChhHHHHHHHHHHHCCeEEecCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 65 1 0 11111 111123445543 678999999999988764457999999999999999999999874
|
| >3ou5_A Serine hydroxymethyltransferase, mitochondrial; structural genomics, STRU genomics consortium, SGC; 2.04A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.06 E-value=1.7e-09 Score=122.31 Aligned_cols=285 Identities=11% Similarity=0.062 Sum_probs=167.9
Q ss_pred HHHHHHHhcCCCCc----ceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHH--------HHHH---h--hcC
Q 001989 216 FQTMIADLTGLPMS----NASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTID--------ICIT---R--ADG 278 (985)
Q Consensus 216 ~q~~ia~L~g~~~~----~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~--------~~~~---~--a~~ 278 (985)
+++...+|+|++.+ |+-.++|+ .+..|+.+|+. ++||+|+.-+..|..-+. .+.. + .-.
T Consensus 105 a~~rak~lF~a~~A~w~VNVQP~SGs-~AN~avy~All---~PGD~ilg~~l~~GGHltHg~~~~~~~v~~sg~~~~~~~ 180 (490)
T 3ou5_A 105 CQRRALEAFDLDPAQWGVNVQPYSGS-PANLAVYTALL---QPHDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMP 180 (490)
T ss_dssp HHHHHHHHTTCCTTTEEEECCCSSHH-HHHHHHHHHHC---C-CCCEECBC----------------------------C
T ss_pred HHHHHHHHhCCCccccCCCCCcCCHH-HHHHHHHHHHc---CCCCEEEecccCCCCcccccccCCCcccccccccccccc
Confidence 45678999999987 66555554 45566677762 399999988776633221 1100 0 001
Q ss_pred CCeEE--EEeCchhhhc--cCCCEeEEEEEcCCCCeeeccHHHHHHHHHhCCcEEEEE-ecCcc---ccCCCCCCcccce
Q 001989 279 FDIKV--VVSDLKDIDY--KSGDVCGVLVQYPGTEGEVLDYGDFIKNAHANGVKVVMA-TDLLA---LTILKPPGELGAD 350 (985)
Q Consensus 279 ~gi~v--~~v~~~~l~~--l~~~t~~V~v~~pn~~G~v~di~~I~~~a~~~galliV~-a~~~~---lg~l~~~~~~GaD 350 (985)
+++.- -.+|+|++++ ..-+.+++++-.+.|. ...|++++.++|++.|+++++| +|..+ -|+..+|-.+ ||
T Consensus 181 Y~vd~~t~~IDyd~~~~~A~~~kPklIi~G~SaY~-r~id~~~~reIAd~vGA~Lm~DmAHiaGLVA~g~~psP~~~-AD 258 (490)
T 3ou5_A 181 YKLNPKTGLIDYNQLALTARLFRPRLIIAGTSAYA-RLIDYARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFKH-AD 258 (490)
T ss_dssp BCEETTTTEECHHHHHHHHHHHCCSEEEECCSSCC-SCCCHHHHHHHHHHHTCEEEEECGGGHHHHHTTSSCCGGGT-CS
T ss_pred cccCCCCCcccHHHHHHHHhhcCCCeEEECCccCc-cccCHHHHHHHHhhcccEEEechhhhhhhhcccccCCcccc-ce
Confidence 12111 1245566665 2234566666554443 4558999999999999999995 45433 3567778776 99
Q ss_pred EEEecC-ccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccc--cccCCCccchhHHH
Q 001989 351 IVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRR--DKATSNICTAQALL 427 (985)
Q Consensus 351 i~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irr--e~atsni~t~~~l~ 427 (985)
||.++. |+|.+ |..|++.++++....-+. .++. ...++ ++.+.+ ..|..--+-+..+.
T Consensus 259 vVTtTTHKTLrG------PrGG~Il~~~~~~~~~~k---------~~~~-~~~~~---~kkin~aVFPg~qggp~~h~IA 319 (490)
T 3ou5_A 259 IVTTTTHKTLRG------ARSGLIFYRKGVKAVDPK---------TGRE-IPYTF---EDRINFAVFPSLQGGPHNHAIA 319 (490)
T ss_dssp EEEEESSSTTCS------CSCEEEEEECSEEEECC-----------CCE-EECCC---HHHHHHHHTTTTCSSCCHHHHH
T ss_pred EEeccccccccC------CCceEEEecccccccccc---------ccch-hHHHH---HHHHHhhcCccccccchHHHHH
Confidence 999999 88865 455899888754221110 0110 00001 111111 12222222223444
Q ss_pred HHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcC-CCCcceEEEecC--C--HHHHHHHHHHcCceeee-
Q 001989 428 ANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQG-LPFFDTVKVKCA--D--AHAIASAAYKIEMNLRV- 501 (985)
Q Consensus 428 a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~-~~~~~~~~~~~~--~--~~~v~~~L~~~GI~~~~- 501 (985)
|.+.++ ...+-+ ..++-+++..+||+.|++.|.+.| ++++. ...-+.+.++.. + ..+..+.|.+.||.+..
T Consensus 320 AkAVaf-~Ea~~p-~fk~Ya~qVv~NAkaLA~~L~~~G-~~vvsGgTdnHlvLvDl~~~g~tG~~ae~~Le~agItvNkN 396 (490)
T 3ou5_A 320 AVAVAL-KQACTP-MFREYSLQVLKNARAMADALLERG-YSLVSGGTDNHLVLVDLRPKGLDGARAERVLELVSITANKN 396 (490)
T ss_dssp HHHHHH-HHHHSH-HHHHHHHHHHHHHHHHHHHHHHTT-CEEGGGSCSSSEEEEECGGGTCCHHHHHHHHHHTTEECEEE
T ss_pred HHHHHH-HHHHhH-hHHHHHHHHHHHHHHHHHHHHhCC-CeeecCCCCceEEEEeccccCCCHHHHHHHHHHcCcEECCC
Confidence 443333 222333 457889999999999999999998 99984 344445666653 2 67788888889997632
Q ss_pred --------ecCCeEEEEeccCCC----HHHHHHHHHHHh
Q 001989 502 --------VDSNTVTASFDETTT----LEDVDKLFIVFA 528 (985)
Q Consensus 502 --------~~~~~lris~t~~~t----~edId~li~aL~ 528 (985)
..++.||+...+.+| ++|++.+.+.+.
T Consensus 397 ~iP~D~sp~~~SGiRiGTpa~TtRG~~e~dm~~IA~~I~ 435 (490)
T 3ou5_A 397 TCPGDRSAITPGGLRLGAPALTSRQFREDDFRRVVDFID 435 (490)
T ss_dssp CCTTCCCSSSCSEEEEESHHHHHTTCCHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCeeEECCHHHHhCCCCHHHHHHHHHHHH
Confidence 235789999877554 577777766664
|
| >2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate, aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A* | Back alignment and structure |
|---|
Probab=98.98 E-value=3.7e-08 Score=117.61 Aligned_cols=288 Identities=13% Similarity=0.061 Sum_probs=160.1
Q ss_pred CcceeeccchHHHHHHHHHHhh---hhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc----------hhhhc-
Q 001989 228 MSNASLLDEGTAAAEAMAMCNN---IQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL----------KDIDY- 293 (985)
Q Consensus 228 ~~~~sl~~~~ta~~ea~~~a~~---~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~----------~~l~~- 293 (985)
+.++.+++|++.++..++.++. +. ++||+|++++-.|+.+..... ....|++++.++. ++|++
T Consensus 165 ~~~I~~t~G~~eal~~~~~~l~~~~l~-~~Gd~Vlv~~P~y~~~~~~~~--~~~~g~~~~~v~~~~~~~~~~d~~~l~~~ 241 (546)
T 2zy4_A 165 SVNLFAVEGGTAAMAYIFESLKLNGLL-KAGDKVAIGMPVFTPYIEIPE--LAQYALEEVAINADPSLNWQYPDSELDKL 241 (546)
T ss_dssp GEEEEEEEHHHHHHHHHHHHHHHTTSS-CTTCEEEEEESCCHHHHHHHH--STTSCCEEEEEECBGGGTTBCCHHHHGGG
T ss_pred cceEEEECCHHHHHHHHHHHhhhhhcC-CCCCEEEEeCCCCccHHHHHH--HcCCCcEEEEEecCcccCCCCCHHHHHHh
Confidence 4678888999887776665421 11 378999999999999888753 2346788777653 34555
Q ss_pred cCCCEeEEEEEcC-CCCeeecc---HHHHHHHH--HhCCcEEEEEecCcc-ccC-CCCCCc--ccceEEEecC-cccccc
Q 001989 294 KSGDVCGVLVQYP-GTEGEVLD---YGDFIKNA--HANGVKVVMATDLLA-LTI-LKPPGE--LGADIVVGSA-QRFGVP 362 (985)
Q Consensus 294 l~~~t~~V~v~~p-n~~G~v~d---i~~I~~~a--~~~galliV~a~~~~-lg~-l~~~~~--~GaDi~v~s~-k~lg~P 362 (985)
+++++++|++++| |.+|.+.+ +++|+++| +++|+++++|. ..+ +.. ..+... .+.+|++.|. |.+|.|
T Consensus 242 ~~~~~k~v~l~~p~NPtG~~~~~~~l~~l~~~a~~~~~~~~ii~De-~y~~~~~~~~s~~~~~~~~~i~~~S~SK~~g~~ 320 (546)
T 2zy4_A 242 KDPAIKIFFCVNPSNPPSVKMDQRSLERVRNIVAEHRPDLMILTDD-VYGTFADDFQSLFAICPENTLLVYSFSKYFGAT 320 (546)
T ss_dssp GSTTEEEEEEESSCSSSCBCCCHHHHHHHHHHHHHTCTTCEEEEEC-TTGGGSTTCCCHHHHCGGGEEEEEESTTTTTCG
T ss_pred hCCCCeEEEEECCCCCCCccCCHHHHHHHHHHHHhccCCcEEEEeC-cchhhcccCcCHHHhCCCCEEEEEeCccccCCC
Confidence 6678999999998 78999865 67788888 78899999953 322 211 111111 2567889887 877532
Q ss_pred CCCCCCcEEEEEEchh-hHhcC----CCceeee-eec-CC-CCcceeeecccc-ccccccc--ccCCCccchhHH-HHHH
Q 001989 363 MGYGGPHAAFLATSQE-YKRMM----PGRIVGV-SID-SS-GKPALRVAMQTR-EQHIRRD--KATSNICTAQAL-LANM 430 (985)
Q Consensus 363 ~~~GGP~~G~l~~~~~-~~~~l----p~~~vG~-t~d-~~-g~~~~~l~l~tr-e~~irre--~atsni~t~~~l-~a~~ 430 (985)
|=-+|+++++++ +++++ |....-. ... .. ....+.+.+..| ....|+- ..+..+++.... .++.
T Consensus 321 ----GlRiG~~~~~~~~l~~~l~~~~p~~~~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~a~a~~ 396 (546)
T 2zy4_A 321 ----GWRLGVVAAHQQNVFDLALDKLQESEKVALDHRYRSLLPDVRSLKFIDRLVADSRAVALNHTAGLSTPQQVQMALF 396 (546)
T ss_dssp ----GGCEEEEEEESSCHHHHHHHTSCHHHHHHHHHHHTTTCSCGGGCCHHHHHHHHTTTTTTGGGCSSCHHHHHHHHHH
T ss_pred ----CcceEEEEECCHHHHHHHHhhcchhhhHHHHHHhhhccccccchhhhhhhhhhhHHHHhhccCCCCcHHHHHHHHH
Confidence 112699998875 54443 2100000 000 00 000000000000 0000110 011122211111 1111
Q ss_pred HHHHHHHh--CcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCCCcce-EEEecC-------------------C-HHH
Q 001989 431 AAMYAVYH--GPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDT-VKVKCA-------------------D-AHA 487 (985)
Q Consensus 431 aa~~l~~~--g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~~~~~-~~~~~~-------------------~-~~~ 487 (985)
+. .+++ +..-++++.+...++.+++.+.|. ++ +.... +...- +.++++ . ...
T Consensus 397 a~--~all~~~~~~~~~~r~~~~~r~~~l~~~L~-~~-~~~~~-~~~~~~l~~~l~~~~~~~~~~~~~~wl~~~~~~~~~ 471 (546)
T 2zy4_A 397 SL--FALMDEADEYKHTLKQLIRRRETTLYRELG-MP-PLRDE-NAVDYYTLIDLQDVTAKLYGEAFSEWAVKQSSTGDM 471 (546)
T ss_dssp HH--HHHHCTTCHHHHHHHHHHHHHHHHHHGGGT-SS-CCCCT-TBCCSEEEEEHHHHHHHHHCHHHHHHHHHHCCHHHH
T ss_pred HH--HHHHhccHHHHHHHHHHHHHHHHHHHHhcC-CC-cccCC-CCeeEEEEEEHHHhhcccccHHHHHHhhccCCHHHH
Confidence 11 1232 223356677777778888888875 44 43221 11111 223321 1 234
Q ss_pred HHHHHHHcCceeeee-----cCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 488 IASAAYKIEMNLRVV-----DSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 488 v~~~L~~~GI~~~~~-----~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
+.+.|.++||.+.+- ..+++|+++. ..++++++++++.|+.
T Consensus 472 l~~ll~~~gV~v~pG~~F~~~~~~iRis~~-~~~~e~i~~~~~~l~~ 517 (546)
T 2zy4_A 472 LFRIADETGIVLLPGRGFGSNRPSGRASLA-NLNEYEYAAIGRALRK 517 (546)
T ss_dssp HHHHHHHHSCCCEESSCTTCSSCEEEEESS-SSCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCEEEeCccccCCCCCeEEEEec-cCCHHHHHHHHHHHHH
Confidence 666777889987542 2468999997 4589999999999874
|
| >2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A {Mesorhizobium SP} PDB: 2ykv_A* 2yku_A* 2ykx_A* | Back alignment and structure |
|---|
Probab=98.36 E-value=2.9e-10 Score=132.72 Aligned_cols=276 Identities=15% Similarity=0.134 Sum_probs=157.1
Q ss_pred HHHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHH-hhhhcCCCCEEEEcCC-CChhHHHHHHHhhcCCCe--EEEE-
Q 001989 211 ESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMC-NNIQKGKKKTFIIASN-CHPQTIDICITRADGFDI--KVVV- 285 (985)
Q Consensus 211 ~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a-~~~~~~~g~~Vlv~~~-~H~s~~~~~~~~a~~~gi--~v~~- 285 (985)
+...++.+.++++++ ....+.++++||.++++++.+ +.+. ++++||+.+. .|......+ +-....|+ .+..
T Consensus 140 ~~~~~Lae~L~~~~p-~~~~v~~~nSGseA~~~Aik~ar~~t--gr~~ii~~~~~yHG~~~~~~-sg~~~~g~~~~~~~~ 215 (465)
T 2yky_A 140 ENEALFAEAVCDRFP-SIDLVRFTNSGTEANLMALATATAIT--GRKTVLAFDGGYHGGLLNFA-SGHAPTNAPYHVVLG 215 (465)
Confidence 344567788999994 233477888999888877743 3233 5688887664 555555443 10011233 2222
Q ss_pred --eCchhhhc-cC---CCEeEEEEEc-CCCCeeecc----HHHHHHHHHhCCcEEEEEecCccccCCCCC---Cccc--c
Q 001989 286 --SDLKDIDY-KS---GDVCGVLVQY-PGTEGEVLD----YGDFIKNAHANGVKVVMATDLLALTILKPP---GELG--A 349 (985)
Q Consensus 286 --v~~~~l~~-l~---~~t~~V~v~~-pn~~G~v~d----i~~I~~~a~~~galliV~a~~~~lg~l~~~---~~~G--a 349 (985)
.|+++|++ ++ +++++|++.. ++..|.+.+ +++|.++|+++|+++++| +..+ +..... ..+| .
T Consensus 216 ~~~d~~~l~~~l~~~~~~~aavi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~D-Ev~~-~r~g~~~a~~~~gv~p 293 (465)
T 2yky_A 216 VYNDVEGTADLLKRHGHDCAAILVEPMLGAGGCVPAERAFLDLLRAEASRCGALLIFD-EVMT-SRLSGGGAQEMLGISA 293 (465)
Confidence 34566776 65 6788888764 355897776 999999999999999994 3334 211111 1233 5
Q ss_pred eEEEecCccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHH
Q 001989 350 DIVVGSAQRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLAN 429 (985)
Q Consensus 350 Di~v~s~k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~ 429 (985)
|+++. +|.+++ |--+|++++++++++.+.+...| . +. ..+|. +.+. + +.
T Consensus 294 Di~t~-sK~lg~-----G~piG~v~~~~~i~~~l~~~~~g-------~--~~------------~~~T~--~~np-l-a~ 342 (465)
T 2yky_A 294 DLTTL-GKYIGG-----GMSFGAFGGRRDLMERFDPARDG-------A--FA------------HAGTF--NNNI-L-TM 342 (465)
Confidence 76532 488863 22257888888887766321001 0 00 00111 1111 1 12
Q ss_pred HHHH-HHHHhCcchHHHHHHHHHHHHHHHHHHHhcCC-CeEEc----CCCCcceEEEec-------------CC-HHHHH
Q 001989 430 MAAM-YAVYHGPEGLKTIAQRVHGLAGTFALGLKKLG-TVEVQ----GLPFFDTVKVKC-------------AD-AHAIA 489 (985)
Q Consensus 430 ~aa~-~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g-~~~~~----~~~~~~~~~~~~-------------~~-~~~v~ 489 (985)
.|++ -+..+.. +++.++..++.++++++|+++. .+.+. +...+-.|.|.. .. ..++.
T Consensus 343 aAa~aaL~~l~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~g~G~~~~i~~~~~~~~~~~~~~~~d~~~~~~~~ 419 (465)
T 2yky_A 343 SAGHAALTQIYT---RQAASDLSASGDRFRANLNRIAVENQAPLQFTGLGSLGTIHFSRAPIRSAGDVRAADQQLKELFF 419 (465)
Confidence 2221 1233333 2467777888889988888751 12221 111111121211 01 45788
Q ss_pred HHHHHcCceeeeecCCeEEEEeccCCCHHHHHHHHHHHhCC
Q 001989 490 SAAYKIEMNLRVVDSNTVTASFDETTTLEDVDKLFIVFAGG 530 (985)
Q Consensus 490 ~~L~~~GI~~~~~~~~~lris~t~~~t~edId~li~aL~~~ 530 (985)
+.|.++||.+.....+. ++..+|++|||+++++|.+.
T Consensus 420 ~~ll~~GV~v~p~~~~~----~s~~~t~edid~~l~~l~~~ 456 (465)
T 2yky_A 420 FHMLRKGIYLAPRGMYA----LSLEIADAGRDAFAEALADF 456 (465)
Confidence 88999999886532222 55679999999999999753
|
| >4atq_A 4-aminobutyrate transaminase; transferase; HET: PLP; 2.75A {Arthrobacter aurescens} PDB: 4atp_A* | Back alignment and structure |
|---|
Probab=98.75 E-value=1.6e-06 Score=100.77 Aligned_cols=273 Identities=15% Similarity=0.120 Sum_probs=154.9
Q ss_pred HHHHHHHHhcCCC-CcceeeccchHHHHHHHH-HHhhhhcCCCCEEEEcC-CCChhHHHHHHHhhc------C---CCeE
Q 001989 215 NFQTMIADLTGLP-MSNASLLDEGTAAAEAMA-MCNNIQKGKKKTFIIAS-NCHPQTIDICITRAD------G---FDIK 282 (985)
Q Consensus 215 e~q~~ia~L~g~~-~~~~sl~~~~ta~~ea~~-~a~~~~~~~g~~Vlv~~-~~H~s~~~~~~~~a~------~---~gi~ 282 (985)
++.+.+++++..+ ...+.+.++||.+.|+++ +|+.++ .+++|+.-+ +-|..+...+..... . ..-.
T Consensus 111 ~lae~L~~~~p~~~~~~v~f~~sGsEA~e~AlklAr~~t--~r~~ii~~~~~yHG~t~~als~t~~~~~~~~~~~p~~~~ 188 (456)
T 4atq_A 111 AVTEQLNRLTPGDHAKRTVLFNSGAEAVENAVKVARLAT--GRDAVVAFDHAYHGRTNLTMALTAKAMPYKTNFGPFAPE 188 (456)
T ss_dssp HHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHHHHHH--CCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTSCSCCSS
T ss_pred HHHHHHHHhCCCCCCcEEEEeCChHHHHHHHHHHHhhhh--cCCeEEEEecccCCccccccccccCccccccCCCCcccc
Confidence 3456788888543 334667789998888777 676665 567777655 667665544421111 0 1122
Q ss_pred EEEeCc--------------h-------hhhc-cC-CCEeEEEEEcC-CCCeeecc----HHHHHHHHHhCCcEEEEEec
Q 001989 283 VVVSDL--------------K-------DIDY-KS-GDVCGVLVQYP-GTEGEVLD----YGDFIKNAHANGVKVVMATD 334 (985)
Q Consensus 283 v~~v~~--------------~-------~l~~-l~-~~t~~V~v~~p-n~~G~v~d----i~~I~~~a~~~galliV~a~ 334 (985)
+..+|. + .+++ +. +++++|++.-- ..-|.+.+ +++|.++|+++|+++|+| +
T Consensus 189 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~iAAvivEPiqg~gG~~~p~~~fl~~lr~lc~~~gillI~D-E 267 (456)
T 4atq_A 189 VYRMPMSYPFREENPEITGAEAAKRAITMIEKQIGGDQVAAIIIEPIQGEGGFIVPAEGFLPALSEWAKEKGIVFIAD-E 267 (456)
T ss_dssp EEEECCCCGGGCSSTTCCHHHHHHHHHHHHHHHTCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHHTCEEEEE-C
T ss_pred ceecccccccccCCCcccHHHHHHHHHHHHHHhhcCCceEEEEeccccCCCCccccchhhhHHHHHHHhhcCCceEec-c
Confidence 333332 1 1122 23 46888887632 45577653 899999999999999994 3
Q ss_pred Cc-cccCCCC---CCccc--ceEEEecCccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeeccccc
Q 001989 335 LL-ALTILKP---PGELG--ADIVVGSAQRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTRE 408 (985)
Q Consensus 335 ~~-~lg~l~~---~~~~G--aDi~v~s~k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre 408 (985)
.. ++|-... -..+| .||++. +|.++ .|.|- |.+.+++++.+.+.+...|
T Consensus 268 V~tG~GRtG~~~a~e~~gv~PDivt~-gK~lg----gg~P~-~av~~~~~i~~~~~~~~~~------------------- 322 (456)
T 4atq_A 268 VQSGFCRTGEWFAVDHEGVVPDIITM-AKGIA----GGLPL-SAITGRADLLDAVHPGGLG------------------- 322 (456)
T ss_dssp TTTTTTTTSSSSGGGGTTCCCSEEEE-CGGGG----TTSSC-EEEEEEHHHHTTSCTTSSC-------------------
T ss_pred cccccCCccccccccccCCCCchhhh-hhccc----CcCCc-eeeEecHHHHhcccccCCC-------------------
Confidence 32 3332211 12234 498766 47775 34455 4466777777665321111
Q ss_pred ccccccccCCCccchhHHHHHHHHH-HHHHhCcchHHHHHHHHHHHHHHHHHHHhcC----C--CeEEcCC----CCcce
Q 001989 409 QHIRRDKATSNICTAQALLANMAAM-YAVYHGPEGLKTIAQRVHGLAGTFALGLKKL----G--TVEVQGL----PFFDT 477 (985)
Q Consensus 409 ~~irre~atsni~t~~~l~a~~aa~-~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~----g--~~~~~~~----~~~~~ 477 (985)
+| +- . .++ +.+|++ -+..+..++ +.++..++.++++++|+++ . +..++.+ -.+--
T Consensus 323 -------~T-f~-g-npl-a~aaala~L~~i~~~~---l~~~~~~~g~~l~~~L~~l~~~~~~~~~~~v~~VRG~Gl~~g 388 (456)
T 4atq_A 323 -------GT-YG-G-NPV-ACAAALAAIDTMEQHD---LNGRARHIEELALGKLRELAAELSAGGGSVVGDIRGRGAMLA 388 (456)
T ss_dssp -------CS-SS-S-CHH-HHHHHHHHHHHHHHTT---HHHHHHHHHHHHHHHHHHHHHHCC-----CEEEEEEETTEEE
T ss_pred -------CC-CC-C-ChH-HHHhhHHHHHHHhhcc---HHHHHHHHHHHHHHHHHHHHHhcccccCCceEEeeecceEEE
Confidence 11 11 1 122 112222 235554444 4455566677777776653 1 0011110 01111
Q ss_pred EEEecC-----C---HHHHHHHHHHcCceeeeec--CCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 478 VKVKCA-----D---AHAIASAAYKIEMNLRVVD--SNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 478 ~~~~~~-----~---~~~v~~~L~~~GI~~~~~~--~~~lris~t~~~t~edId~li~aL~~ 529 (985)
|-+..+ . +..+.+.+.++|+.+.... ++.||+++....|++|||+++++|.+
T Consensus 389 iel~~~~~~~~~~~~~~~v~~~~~~~Gvl~~~~g~~~~~irl~PpL~it~~~id~~l~~l~~ 450 (456)
T 4atq_A 389 IELVQPGSKEPNAELTKAVAAACLKEGVIILTCGTYGNVIRLLPPLVISDELLIDGLEVLAA 450 (456)
T ss_dssp EEEBCTTSCCBCHHHHHHHHHHHHHTTEECEEECTTSCEEEECCCTTCCHHHHHHHHHHHHH
T ss_pred EEEecCCCCCcCHHHHHHHHHHHHHCCCEEEecCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 222111 2 5678899999999886542 47899999999999999999998874
|
| >4e3q_A Pyruvate transaminase; aminotransferase, transferase; HET: PMP; 1.90A {Vibrio fluvialis} PDB: 4e3r_A* 3nui_A | Back alignment and structure |
|---|
Probab=98.64 E-value=2.6e-06 Score=99.38 Aligned_cols=289 Identities=12% Similarity=0.148 Sum_probs=160.2
Q ss_pred HHHHHHHHhcCCCCcceeeccchHHHHHHHH-HHhhhh--c--CCCCEEEEcC-CCChhHHHHHHHhh----cC-----C
Q 001989 215 NFQTMIADLTGLPMSNASLLDEGTAAAEAMA-MCNNIQ--K--GKKKTFIIAS-NCHPQTIDICITRA----DG-----F 279 (985)
Q Consensus 215 e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~-~a~~~~--~--~~g~~Vlv~~-~~H~s~~~~~~~~a----~~-----~ 279 (985)
++-+.|++++..+...+.+.++||.+.|+++ +|+.+. + .++.+||.-. +-|..+...+..-. +. .
T Consensus 115 ~lAe~L~~~~p~~~~~v~f~~sGsEA~e~AiKlAr~~~~~~g~~~r~~ii~~~~~yHG~t~~a~s~tg~~~~~~~~~~~~ 194 (473)
T 4e3q_A 115 MLSEKLVEVSPFDSGRVFYTNSGSEANDTMVKMLWFLHAAEGKPQKRKILTRWNAYHGVTAVSASMTGKPYNSVFGLPLP 194 (473)
T ss_dssp HHHHHHHHHSSCSSCEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCGGGGGGTCSCT
T ss_pred HHHHHHHhhCCCCccEEEEeCchHHHHHHHHHHHHHHHHhcCCCCcceEEEeeceECCCccccccccccccccccCCCCC
Confidence 4556888888766556878899999999877 665442 1 2455676544 66766555442110 00 1
Q ss_pred CeEEEEeCc-------------------hhhhc-c----CCCEeEEEEEcC-CCCeeecc----HHHHHHHHHhCCcEEE
Q 001989 280 DIKVVVSDL-------------------KDIDY-K----SGDVCGVLVQYP-GTEGEVLD----YGDFIKNAHANGVKVV 330 (985)
Q Consensus 280 gi~v~~v~~-------------------~~l~~-l----~~~t~~V~v~~p-n~~G~v~d----i~~I~~~a~~~galli 330 (985)
+......|. +++++ + .+++++|++.-- ..-|.+.+ +++|.++|+++|++||
T Consensus 195 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~iAavi~EPiqg~gG~~~p~~~fl~~lr~lc~~~gilLI 274 (473)
T 4e3q_A 195 GFVHLTCPHYWRYGEEGETEEQFVARLARELEETIQREGADTIAGFFAEPVMGAGGVIPPAKGYFQAILPILRKYDIPVI 274 (473)
T ss_dssp TEEEECCCCHHHHSCTTCCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCCEE
T ss_pred cccccCCCcccccccccchhhHHHHHHHHHHHHHHHhhCCCceEEEEeCCccCCCCceeCCHHHHHHHHHHhcccceEEe
Confidence 222221111 12222 1 245777777542 45677653 8999999999999999
Q ss_pred EEecCc-cccCCCCC---Cccc--ceEEEecCccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeec
Q 001989 331 MATDLL-ALTILKPP---GELG--ADIVVGSAQRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAM 404 (985)
Q Consensus 331 V~a~~~-~lg~l~~~---~~~G--aDi~v~s~k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l 404 (985)
+| +.. ++|-.... ..+| .||++. +|.++ .|+--+|.+.+++++.+.+.+..-. . + . +
T Consensus 275 ~D-EV~tGfGRtG~~fa~e~~gv~PDi~t~-~K~l~----gG~~Pl~av~~~~~i~~~~~~~~~~---~--~-~-~---- 337 (473)
T 4e3q_A 275 SD-EVICGFGRTGNTWGCVTYDFTPDAIIS-SKNLT----AGFFPMGAVILGPELSKRLETAIEA---I--E-E-F---- 337 (473)
T ss_dssp EE-CTTTSSSTTSSSCHHHHTTCCCSEEEE-CGGGG----TTSSCCEEEEECHHHHHHHHHHHHH---H--S-C-C----
T ss_pred cc-CccccCCcccchhHHHhcCCCCChHHh-ccccc----CCCCCcccccccHHHHHHhcccccc---c--c-c-c----
Confidence 95 332 34322111 1123 488653 57774 2333445667788876654211000 0 0 0 0
Q ss_pred ccccccccccccCCCccchhHHHHHHHHH-HHHHhCcchHHHHHHHHHHHHHHHHHHHhcCC---CeE-EcCCCCcceEE
Q 001989 405 QTREQHIRRDKATSNICTAQALLANMAAM-YAVYHGPEGLKTIAQRVHGLAGTFALGLKKLG---TVE-VQGLPFFDTVK 479 (985)
Q Consensus 405 ~tre~~irre~atsni~t~~~l~a~~aa~-~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g---~~~-~~~~~~~~~~~ 479 (985)
.-|+.+- . .++ +.++++ -+..+..++ +.++..++..+|+++|+++. .+. +-+.-.+-.+-
T Consensus 338 ---------~hg~T~~-G-npl-a~Aaala~L~~i~~~~---l~~~~~~~g~~l~~~L~~l~~~~~v~~vRG~Gl~~gie 402 (473)
T 4e3q_A 338 ---------PHGFTAS-G-HPV-GCAIALKAIDVVMNEG---LAENVRRLAPRFEERLKHIAERPNIGEYRGIGFMWALE 402 (473)
T ss_dssp ---------CCCCTTT-T-CHH-HHHHHHHHHHHHHHSS---HHHHHHHHHHHHHHHHHHHTTSTTEEEEEEETTEEEEE
T ss_pred ---------ccCCCCC-C-Ccc-hhhhhhhhhhhhcccc---HHHHHHHHHHHHHHHHHHHhcCCCeeEEeecceEEEEE
Confidence 0111111 1 122 222222 235554544 45566677888888887641 111 10000010111
Q ss_pred Ee----------cC-C-HHHHHHHHHHcCceeeeecCCeEEEEeccCCCHHHHHHHHHHHhCCCCCCCCHHhhhh
Q 001989 480 VK----------CA-D-AHAIASAAYKIEMNLRVVDSNTVTASFDETTTLEDVDKLFIVFAGGKSVPFTAASLAE 542 (985)
Q Consensus 480 ~~----------~~-~-~~~v~~~L~~~GI~~~~~~~~~lris~t~~~t~edId~li~aL~~~~~~~~~~~~l~~ 542 (985)
+. .. . ...+.+.+.++|+.++.. .+.+++++....|++|||+++++|.+. ++++++
T Consensus 403 lv~~~~~~~~~~~~~~~~~~~~~~~~~~Gll~~~~-g~~i~l~PPL~it~~eid~~~~~l~~a------l~~v~a 470 (473)
T 4e3q_A 403 AVKDKASKTPFDGNLSVSERIANTCTDLGLICRPL-GQSVVLCPPFILTEAQMDEMFDKLEKA------LDKVFA 470 (473)
T ss_dssp ECSBTTTTBCCCGGGCHHHHHHHHHHHTTEECEEE-TTEEEECCCTTCCHHHHHHHHHHHHHH------HHHHHH
T ss_pred EecCccccccccccHHHHHHHHHHHHHCCcEEEec-CCEEEEeCCCCCCHHHHHHHHHHHHHH------HHHHHH
Confidence 10 00 1 577899999999988764 578999999999999999999999863 566554
|
| >3k7y_A Aspartate aminotransferase; aminotrans pyridoxal phosphate; HET: PLP; 2.80A {Plasmodium falciparum} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=98.47 E-value=1e-05 Score=92.82 Aligned_cols=307 Identities=13% Similarity=0.064 Sum_probs=164.5
Q ss_pred cCCCCCC-----CCCcHHHHHH--HHhCCccccccCCChhhHhhhHHHHHHHHHHHHHHhc-CC-----CCcc--eeecc
Q 001989 171 IGMGYYN-----THVPPVILRN--IMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLT-GL-----PMSN--ASLLD 235 (985)
Q Consensus 171 lG~g~y~-----~~~p~~v~~~--i~~~~~~~t~~~pyq~e~sqg~l~~i~e~q~~ia~L~-g~-----~~~~--~sl~~ 235 (985)
+|.|.|+ ...|+.+.++ ++........|+|.+ |.. ++++.+|+++ +. ++.+ +..+.
T Consensus 34 l~~G~~~d~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~-----G~~----~lr~aia~~~~~~~~~~~~~~~i~i~~t~ 104 (405)
T 3k7y_A 34 LSIGVCCNDDGDLHIFDSVLNADKLVTENYKEKPYLLGN-----GTE----DFSTLTQNLIFGNNSKYIEDKKICTIQCI 104 (405)
T ss_dssp CSCSSCBCTTSSBCCCHHHHHHHHHHHHHCCCCCCCTTS-----SCH----HHHHHHHHHHHCSSCTTTTTTCEEEEEEE
T ss_pred eeeeeeECCCCCCcccHHHHHHHHHhcCCCCCCCCCCCC-----CcH----HHHHHHHHHHcCCCCccccccceEEEEcC
Confidence 5777652 2356777544 221112245666532 322 3455555554 22 2233 46778
Q ss_pred chHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc----------hhhhc-cC--CCEeEEE
Q 001989 236 EGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL----------KDIDY-KS--GDVCGVL 302 (985)
Q Consensus 236 ~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~----------~~l~~-l~--~~t~~V~ 302 (985)
|++.++..+..++.-. .+ |+|++++-.++.+...++ ..|.+++.+++ +++++ +. +++++++
T Consensus 105 G~~~al~~~~~~l~~~-~~-d~Vlv~~P~y~~~~~~~~----~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~i~ 178 (405)
T 3k7y_A 105 GGTGAIFVLLEFLKML-NV-ETLYVTNPPYINHVNMIE----SRGFNLKYINFFDYNLIDINYDLFLNDLRNIPNGSSVI 178 (405)
T ss_dssp HHHHHHHHHHHHHHTT-TC-CEEEEESSCCHHHHHHHH----TTTCEEEEECCEETTTTEECHHHHHHHHHHSCSSCEEE
T ss_pred chHHHHHHHHHHHHhc-CC-CEEEEeCCCCHhHHHHHH----HcCCeEEEEeccccccCCcCHHHHHHHHHhCCCCeEEE
Confidence 8887777665544210 16 999999999999988875 46888888764 23444 43 4567787
Q ss_pred EEc-C-CCCeeec---cHHHHHHHHHhCCcEEEEEecCccccC--CC-C--C----Ccccce-EEEecC-ccccccCCCC
Q 001989 303 VQY-P-GTEGEVL---DYGDFIKNAHANGVKVVMATDLLALTI--LK-P--P----GELGAD-IVVGSA-QRFGVPMGYG 366 (985)
Q Consensus 303 v~~-p-n~~G~v~---di~~I~~~a~~~galliV~a~~~~lg~--l~-~--~----~~~GaD-i~v~s~-k~lg~P~~~G 366 (985)
+.. | |.+|.+. .+++|+++|+++|++++.|.-...+.. .. + + ...+-. |++.|. |.|+.|
T Consensus 179 l~~~~~NPTG~~~s~~~~~~l~~~~~~~~~~vi~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~l~---- 254 (405)
T 3k7y_A 179 LQISCYNPCSVNIEEKYFDEIIEIVLHKKHVIIFDIAYQGFGHTNLEEDVLLIRKFEEKNIAFSVCQSFSKNMSLY---- 254 (405)
T ss_dssp ECCSSCTTTCCCCCHHHHHHHHHHHHHHCCEEEEEESCTTTSSSSTTGGGHHHHHHHTTTCCEEEEEECTTTSCCT----
T ss_pred EeCCCCCCCCCCCCHHHHHHHHHHHHHCCeEEEEecCcccccCCCcccchHHHHHHHhcCCcEEEEeeCCccCCCc----
Confidence 765 3 8999875 578889999999999999531111211 00 0 0 011222 556665 888643
Q ss_pred CCcEEEEEE---chhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHHHH--hC--
Q 001989 367 GPHAAFLAT---SQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVY--HG-- 439 (985)
Q Consensus 367 GP~~G~l~~---~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~--~g-- 439 (985)
|=-+|++.+ ++++++.+-.. + ....|. .+.|++. +...+++.++.. ++
T Consensus 255 GlRiG~~~~~~~~~~~~~~~~~~-----------------l----~~~~~~---~~~~~~~-~~q~~~~~~l~~~~l~~~ 309 (405)
T 3k7y_A 255 GERAGALHIVCKNQEEKKIVFNN-----------------L----CFIVRK---FYSSPVI-HTNRILCQLLNNQNLKLN 309 (405)
T ss_dssp TTTEEEEEEECSSHHHHHHHHHH-----------------H----HHHHHT---TTSSCCH-HHHHHHHHHHHCHHHHHH
T ss_pred cccceEEEEEeCCHHHHHHHHHH-----------------H----HHHHhc---ccCCCcH-HHHHHHHHHhCCHHHHHH
Confidence 334688753 33433322000 0 000010 1112111 111111111111 00
Q ss_pred -cchHHHHHHHHHHHHHHHHHHHh----cCCC---eEEcCCCCcceEEE-ecCCHHHHHHHHHHcCceeeeecCCeEEEE
Q 001989 440 -PEGLKTIAQRVHGLAGTFALGLK----KLGT---VEVQGLPFFDTVKV-KCADAHAIASAAYKIEMNLRVVDSNTVTAS 510 (985)
Q Consensus 440 -~~Gl~~i~~~~~~~a~~l~~~L~----~~g~---~~~~~~~~~~~~~~-~~~~~~~v~~~L~~~GI~~~~~~~~~lris 510 (985)
.+-++++.++..++.+++.+.|+ ++|. ++... +...-|.+ ..+ .+..++|.++||.+.+ .+ |+|
T Consensus 310 ~~~~l~~~~~~~~~~R~~l~~~L~~~~~~~g~~~~~~~~~-p~gg~f~~~~l~--~~~~~~L~~~gV~v~p--~~--Ris 382 (405)
T 3k7y_A 310 WIKELSQLSQRITNNRILFFNKLETYQKKYNLNYDWNVYK-KQRGLFSFVPLL--AKIAEHLKTHHIYIIN--NG--RIN 382 (405)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHGGGGTCCCCGGGGS-SCCSSEEECGGG--GGGTTTTTTTTEECCT--TS--EEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCcccc-CCceEEEecCCC--HHHHHHHHHCCEeecC--CC--eEE
Confidence 12345666777888899999998 7751 23332 11111322 222 2444667667997754 23 888
Q ss_pred eccCCCHHHHHHHHHHHhC
Q 001989 511 FDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 511 ~t~~~t~edId~li~aL~~ 529 (985)
+.- .++++|++++++|.+
T Consensus 383 ~a~-~~~~~i~~~~~~i~~ 400 (405)
T 3k7y_A 383 VSG-ITKNNVDYIADKICL 400 (405)
T ss_dssp GGG-CCTTHHHHHHHHHHH
T ss_pred Eec-cCHHHHHHHHHHHHH
Confidence 763 355778888888763
|
| >4h51_A Aspartate aminotransferase; ssgcid, structural genomics, seattle struc genomics center for infectious disease, aspartate aminotran transferase; HET: LLP; 1.85A {Leishmania major} | Back alignment and structure |
|---|
Probab=98.35 E-value=1.5e-05 Score=91.58 Aligned_cols=312 Identities=15% Similarity=0.138 Sum_probs=160.6
Q ss_pred cCCCCCCC-----CCcHHHHHH---HHhCCccccccCCChhhHhhhHHHHHHHHHHHHHHhc-CC--CCcc--eeeccch
Q 001989 171 IGMGYYNT-----HVPPVILRN---IMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLT-GL--PMSN--ASLLDEG 237 (985)
Q Consensus 171 lG~g~y~~-----~~p~~v~~~---i~~~~~~~t~~~pyq~e~sqg~l~~i~e~q~~ia~L~-g~--~~~~--~sl~~~~ 237 (985)
||-|.|.. .+++.|.++ +++ .++.-.|+|.+ |. -++++.+++++ |- +... ..-+.+|
T Consensus 49 LgvG~y~d~~g~~~vl~~Vk~A~~~~~~-~~~~~~Y~p~~-----G~----p~lr~aia~~~~g~~~~~~~~~~~qt~gg 118 (420)
T 4h51_A 49 LVIGAYRDEQGRPYPLRVVRKAEQLLLD-MNLDYEYLPIS-----GY----QPFIDEAVKIIYGNTVELENLVAVQTLSG 118 (420)
T ss_dssp CCSCCCBCTTSCBCCCHHHHHHHHHHHH-TTCCCCCCCTT-----CC----HHHHHHHHHHHHC---CGGGEEEEEEEHH
T ss_pred eecCcccCCCCCCCCCHHHHHHHHHHhc-CCCCCCCCCcC-----Ch----HHHHHHHHHHhcCCCccccccceeeecCc
Confidence 68887642 243455322 333 33323576643 22 23555666654 32 2222 2235677
Q ss_pred HHHHHHHH-HHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeE-EEEe---C-------chhhhc----cCCCEeEE
Q 001989 238 TAAAEAMA-MCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIK-VVVS---D-------LKDIDY----KSGDVCGV 301 (985)
Q Consensus 238 ta~~ea~~-~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~-v~~v---~-------~~~l~~----l~~~t~~V 301 (985)
|++....+ +..+...++||+|++++-.++.+...++. .|.+ +... + .+.+.+ ..++++.+
T Consensus 119 tga~~~a~~~l~~~~~~pgd~V~ip~P~w~~y~~i~~~----aG~~~V~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~vl 194 (420)
T 4h51_A 119 TGAVSLGAKLLTRVFDAETTPIYLSDPTWPNHYGVVKA----AGWKNICTYAYYDPKTVSLNFEGMKKDILAAPDGSVFI 194 (420)
T ss_dssp HHHHHHHHHHHTTTSCTTTSCEEEEESCCTHHHHHHHH----TTCCCEEEEECEEGGGTEECHHHHHHHHHHSCSSCEEE
T ss_pred hHHHHHHHHHHHHhcCCCCCEEEEecCCchhHHHHHHH----cCCeEEEeeccccccccCCCHHHHHHHHhccCCCcEEE
Confidence 76654333 22222124899999999999998888764 3443 2221 1 122222 35667767
Q ss_pred EEEcC-CCCeeec---cHHHHHHHHHhCCcEEEEEecCccccC--CC-CC------CcccceE-EEecC-ccccccCCCC
Q 001989 302 LVQYP-GTEGEVL---DYGDFIKNAHANGVKVVMATDLLALTI--LK-PP------GELGADI-VVGSA-QRFGVPMGYG 366 (985)
Q Consensus 302 ~v~~p-n~~G~v~---di~~I~~~a~~~galliV~a~~~~lg~--l~-~~------~~~GaDi-~v~s~-k~lg~P~~~G 366 (985)
++.+| |++|.+. ++++|+++|++++.+++.|.-...+.. .. ++ .+.+-.+ ++.|. |.|+.+
T Consensus 195 l~~~p~NPtG~~~~~~~~~~i~~~~~~~~~~~~~D~~Y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~---- 270 (420)
T 4h51_A 195 LHQCAHNPTGVDPSQEQWNEIASLMLAKHHQVFFDSAYQGYASGSLDTDAYAARLFARRGIEVLLAQSFSKNMGLY---- 270 (420)
T ss_dssp EESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCCEEEEECTTTSCCG----
T ss_pred EeCCCCCCCCCCCCHHHHHHHHHHHHhcCceEeeehhhhhhccCCcccchHHHHhHHhhCceEEEEeccccccccc----
Confidence 76677 8999875 688999999999999988532222211 10 00 0122233 45554 877643
Q ss_pred CCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHH-----HHhCcc
Q 001989 367 GPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYA-----VYHGPE 441 (985)
Q Consensus 367 GP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l-----~~~g~~ 441 (985)
|--+|++.+..+..+.+. ++. ..-..+.|. ..+|. ....+..++..+ ...-.+
T Consensus 271 G~RvG~~~~~~~~~~~~~-~~~-----------------~~l~~~~r~-~~s~~---p~~~a~~~~~~l~d~~l~~~~~~ 328 (420)
T 4h51_A 271 SERAGTLSLLLKDKTKRA-DVK-----------------SVMDSLIRE-EYTCP---PAHGARLAHLILSNNELRKEWEA 328 (420)
T ss_dssp GGCEEEEEEECSCHHHHH-HHH-----------------HHHHHHHHT-TTSSC---CHHHHHHHHHHHHSHHHHHHHHH
T ss_pred cCceEEEEecccCHHHHH-HHH-----------------HHHHHhhhc-ccCcc---hHHHHHHHHHHhcCHHHHHHHHH
Confidence 234677766433222110 000 000011111 11222 111111121111 111123
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcCCCeEE-cC--CCCcceEEEecCCHHHHHHHHHHcCceeeeecCCeEEEEeccCCCHH
Q 001989 442 GLKTIAQRVHGLAGTFALGLKKLGTVEV-QG--LPFFDTVKVKCADAHAIASAAYKIEMNLRVVDSNTVTASFDETTTLE 518 (985)
Q Consensus 442 Gl~~i~~~~~~~a~~l~~~L~~~g~~~~-~~--~~~~~~~~~~~~~~~~v~~~L~~~GI~~~~~~~~~lris~t~~~t~e 518 (985)
-++.+.++..+..+.|.+.|+++| ... +. .+...-|.+ .+-..+..+.|+++||++-. ++ |||+.- -+++
T Consensus 329 ~~~~m~~r~~~~R~~l~~~L~~~g-~~~~~~~i~~q~GmF~~-~gls~e~v~~L~e~~Vy~~~--~g--Ris~Ag-l~~~ 401 (420)
T 4h51_A 329 ELSAMAERIRTMRRTVYDELLRLQ-TPGSWEHVINQIGMFSF-LGLSKAQCEYCQNHNIFITV--SG--RANMAG-LTHE 401 (420)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTT-CSSCCTHHHHCCSSEEE-CCCCHHHHHHHHHTTEECCT--TC--EEEGGG-CCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhC-CCCCCCeecCCCceEEe-cCcCHHHHHHHHhCCEEEcC--CC--EEEecc-CCHH
Confidence 456777888888899999999886 211 10 000112443 22123445788899997642 23 888764 4678
Q ss_pred HHHHHHHHHhC
Q 001989 519 DVDKLFIVFAG 529 (985)
Q Consensus 519 dId~li~aL~~ 529 (985)
.|+++++++.+
T Consensus 402 ni~~~a~aI~~ 412 (420)
T 4h51_A 402 TALMLAQTIND 412 (420)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 89999988864
|
| >4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A* | Back alignment and structure |
|---|
Probab=98.20 E-value=5.5e-05 Score=94.20 Aligned_cols=285 Identities=14% Similarity=0.101 Sum_probs=151.0
Q ss_pred HHHHHHHHHHHhcCCC-CcceeeccchHHHHHHHH-HHhh-hhc--C----------CCCEEEE-cCCCChhHHHHHHHh
Q 001989 212 SLLNFQTMIADLTGLP-MSNASLLDEGTAAAEAMA-MCNN-IQK--G----------KKKTFII-ASNCHPQTIDICITR 275 (985)
Q Consensus 212 ~i~e~q~~ia~L~g~~-~~~~sl~~~~ta~~ea~~-~a~~-~~~--~----------~g~~Vlv-~~~~H~s~~~~~~~~ 275 (985)
...++.+.++++++.+ ...+.+.++|+.+.|+++ ||++ +.. + .+.+||. ..+-|.++...+..-
T Consensus 425 ~~~~Lae~L~~~~p~~~l~~vff~~SGSeA~E~AlK~A~r~~~~~~g~~~~~~~~~~~r~~iI~~~~syHG~T~gals~t 504 (831)
T 4a0g_A 425 PALKCAELLLDGVGKGWASRVYFSDNGSTAIEIALKMAFRKFCVDHNFCEATEEEKHIVVKVIALRGSYHGDTLGAMEAQ 504 (831)
T ss_dssp HHHHHHHHHHHTTTTTTCCEEEEESSHHHHHHHHHHHHHHHHHHTTTC---------CCEEEEEETTCCCCSSHHHHHTS
T ss_pred HHHHHHHHHHHhCCCCCCCEEEECCChhHHHHHHHHHHHHHHHhhcCCCccccccccCccEEEEecCCcccCceeeeecc
Confidence 3346778999999744 345778899999999777 6743 321 1 1346664 557888877766421
Q ss_pred h-----c--------CCCeE-------------EEEeC---------------c------------------hhhhc-cC
Q 001989 276 A-----D--------GFDIK-------------VVVSD---------------L------------------KDIDY-KS 295 (985)
Q Consensus 276 a-----~--------~~gi~-------------v~~v~---------------~------------------~~l~~-l~ 295 (985)
. . .++.- ....| . ++|++ +.
T Consensus 505 g~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~ 584 (831)
T 4a0g_A 505 APSPYTGFLQQPWYTGRGLFLDPPTVFLSNGSWNISLPESFSEIAPEYGTFTSRDEIFDKSRDASTLARIYSAYLSKHLQ 584 (831)
T ss_dssp CCCGGGSTTTCTTCCCCEEEECCCEEEEETTEEEEECCTTSCCCCSSTTEESCHHHHHCGGGGGSHHHHHHHHHHHHHC-
T ss_pred CccccccccccccccCCccccCCccccccCCceEecCCccccccccccccccchhhhhcccccchhhhHHHHHHHHHHHH
Confidence 0 0 01110 11111 0 23444 42
Q ss_pred --------CCEeEEEEEcC--CCCeeecc----HHHHHHHHHhCCcEEEEEecCc-cccCCCCC---Cccc--ceEEEec
Q 001989 296 --------GDVCGVLVQYP--GTEGEVLD----YGDFIKNAHANGVKVVMATDLL-ALTILKPP---GELG--ADIVVGS 355 (985)
Q Consensus 296 --------~~t~~V~v~~p--n~~G~v~d----i~~I~~~a~~~galliV~a~~~-~lg~l~~~---~~~G--aDi~v~s 355 (985)
+++++|++..- +.-|.+.+ +++|.++|+++|+++|+| +.. ++|-.... ..+| .||++ -
T Consensus 585 ~~~~~~~~~~iaavi~Epvvqg~gG~~~~~~~~L~~l~~lc~~~gilLI~D-EV~tGfGRtG~~fa~e~~gv~PDiit-l 662 (831)
T 4a0g_A 585 EHSGVRQSAHVGALIIEPVIHGAGGMHMVDPLFQRVLVNECRNRKIPVIFD-EVFTGFWRLGVETTTELLGCKPDIAC-F 662 (831)
T ss_dssp --------CEEEEEEECCSEETTTTSEEECHHHHHHHHHHHHHTTCCEEEE-CTTTTTTTTSBSSTHHHHSSCCSEEE-E
T ss_pred hhhhhcCCCcEEEEEEecccccCCCCccCCHHHHHHHHHHHHHcCCeEEEE-cCccccccCCCchhhHhcCCCCcEEE-E
Confidence 34666766542 45676654 899999999999999995 332 34433221 1234 38764 3
Q ss_pred CccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHH
Q 001989 356 AQRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYA 435 (985)
Q Consensus 356 ~k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l 435 (985)
+|.|++ |.=-+|++.+++++.+.+... .+... ...+.++-..+.+..+..++ +
T Consensus 663 sK~L~g----G~~Plgav~~~~~i~~~~~~~----------~~~~~-----------~~hg~T~~g~Pla~Aaala~--L 715 (831)
T 4a0g_A 663 AKLLTG----GMVPLAVTLATDAVFDSFSGD----------SKLKA-----------LLHGHSYSAHAMGCATAAKA--I 715 (831)
T ss_dssp CGGGGT----TSSCCEEEEECHHHHHTTCSS----------CGGGS-----------CCCCCTTTTCHHHHHHHHHH--H
T ss_pred eccccc----CccCcEEEEECHHHHHHHhcc----------ccccc-----------ceeecCCcccHHHHHHHHHH--H
Confidence 487742 212247788899988776321 00000 00111111111111122222 2
Q ss_pred HHhCcchHHHHHHHHHHHH--------HHHHHHHhcCCCeEEc-CCCCcceEEEec-------CC--HHHHHHHHHHcCc
Q 001989 436 VYHGPEGLKTIAQRVHGLA--------GTFALGLKKLGTVEVQ-GLPFFDTVKVKC-------AD--AHAIASAAYKIEM 497 (985)
Q Consensus 436 ~~~g~~Gl~~i~~~~~~~a--------~~l~~~L~~~g~~~~~-~~~~~~~~~~~~-------~~--~~~v~~~L~~~GI 497 (985)
..+..+++. ++..++. +.+.+.+.+.+.+.-+ ..-.+-.+.+.. .. +.++.++|.++||
T Consensus 716 ~~i~~~~l~---~~~~~~~~~l~~~l~~~l~~~l~~~~~v~~vrg~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gv 792 (831)
T 4a0g_A 716 QWFKDPETN---HNITSQGKTLRELWDEELVQQISSHSAVQRVVVIGTLFALELKADASNSGYASLYAKSLLIMLREDGI 792 (831)
T ss_dssp HHHHCTTTC---TTBCTTSSBBCCCSCHHHHHHHHHSTTEEEEEEETTEEEEEEC---------CHHHHHHHHHHHHTTE
T ss_pred HHHHhhHHH---HHHHHHHHHHHHHHHHHHHHHHhhCCCceeEeecccEEEEEEecCccccccchHHHHHHHHHHHHCCc
Confidence 333222221 1111111 1233344444322211 111111122211 11 6678999999999
Q ss_pred eeeeecCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 498 NLRVVDSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 498 ~~~~~~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
.++.. .+.||++++..+|++|||+++++|..
T Consensus 793 ~v~p~-g~~lrl~pp~~~t~e~id~~~~~l~~ 823 (831)
T 4a0g_A 793 FTRPL-GNVIYLMCGPCTSPEICRRLLTKLYK 823 (831)
T ss_dssp ECCCB-TTEEEEECCTTCCHHHHHHHHHHHHH
T ss_pred EEEec-CCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 98764 57999999999999999999999874
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 985 | ||||
| d1wyub1 | 471 | c.67.1.7 (B:2-472) Glycine dehydrogenase subunit 2 | 1e-105 | |
| d1wyub1 | 471 | c.67.1.7 (B:2-472) Glycine dehydrogenase subunit 2 | 5e-47 | |
| d1wyua1 | 437 | c.67.1.7 (A:1-437) Glycine dehydrogenase (decarbox | 5e-85 | |
| d1wyua1 | 437 | c.67.1.7 (A:1-437) Glycine dehydrogenase (decarbox | 4e-78 | |
| d3bc8a1 | 445 | c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase | 7e-42 | |
| d3bc8a1 | 445 | c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase | 7e-15 | |
| d2z67a1 | 434 | c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase ( | 3e-40 | |
| d2z67a1 | 434 | c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase ( | 2e-22 | |
| d1ax4a_ | 465 | c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanas | 2e-35 | |
| d2v1pa1 | 467 | c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptop | 2e-29 | |
| d1pmma_ | 450 | c.67.1.6 (A:) Glutamate decarboxylase beta, GadB { | 7e-28 | |
| d1js3a_ | 476 | c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) | 6e-16 | |
| d1jf9a_ | 405 | c.67.1.3 (A:) NifS-like protein/selenocysteine lya | 0.001 | |
| d1p3wa_ | 391 | c.67.1.3 (A:) Cysteine desulfurase IscS {Escherich | 0.002 |
| >d1wyub1 c.67.1.7 (B:2-472) Glycine dehydrogenase subunit 2 (P-protein) {Thermus thermophilus [TaxId: 274]} Length = 471 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Glycine dehydrogenase subunits (GDC-P) domain: Glycine dehydrogenase subunit 2 (P-protein) species: Thermus thermophilus [TaxId: 274]
Score = 335 bits (859), Expect = e-105
Identities = 148/433 (34%), Positives = 218/433 (50%), Gaps = 25/433 (5%)
Query: 531 KSVP----FTAASLAEEVETAIPSGLTRESPYLTHPVFNKYHTEHELLRYIHLLQSKELS 586
+S + E IP RE P V E L+R+ L +++
Sbjct: 8 RSRKGRRGLKLVKAVPKAEDLIPKEHLREVPPRLPEV-----DELTLVRHYTGLSRRQVG 62
Query: 587 LCHSMIPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITG 646
+ + PLGSCTMK N FA++HP+ AQG + LGE+L +TG
Sbjct: 63 VDTTFYPLGSCTMKYNPKLHEEAARL--FADLHPYQDPRTAQGALRLMWELGEYLKALTG 120
Query: 647 FDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVS 706
D+ +L+P AGA GE G+++IRAYH+ RG+ ++ + + A V
Sbjct: 121 MDAITLEPAAGAHGELTGILIIRAYHEDRGEGRTRRVVLVPDSAHGSNPATASMAGYQVR 180
Query: 707 VGTDAKGNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMD 766
E K LM+T P+T G++E I EI ++ + G Q+Y D
Sbjct: 181 EIPSGPEGEVDLEALKRELGPHVA--ALMLTNPNTLGLFERRILEISRLCKEAGVQLYYD 238
Query: 767 GANMNAQVGLTSPGYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVS 826
GAN+NA +G PG +G DV HLNLHKTF +PHGGGGPG GP+GVK HLAP+LP V
Sbjct: 239 GANLNAIMGWARPGDMGFDVVHLNLHKTFTVPHGGGGPGSGPVGVKAHLAPYLPVPLVER 298
Query: 827 TGGIPAPEKSQPLGTIAAAPW-GSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKR 885
+ +P + G+ L L ++ YI +G +GL +A+ +A+LNA Y+ +
Sbjct: 299 GEEGFYLDFDRPKSIGRVRSFYGNFLALVRAWAYIRTLGLEGLKKAAALAVLNARYLKEL 358
Query: 886 LEKH-YPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWP--VP 942
L++ Y + + +G HEF+ + G D+AK L++ GFH PT+ +P V
Sbjct: 359 LKEKGYRVPY---DGPSMHEFV-----AQPPEGFRALDLAKGLLELGFHPPTVYFPLIVK 410
Query: 943 GTLMIEPTESESK 955
LM+EPTE+E+K
Sbjct: 411 EALMVEPTETEAK 423
|
| >d1wyub1 c.67.1.7 (B:2-472) Glycine dehydrogenase subunit 2 (P-protein) {Thermus thermophilus [TaxId: 274]} Length = 471 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Glycine dehydrogenase subunits (GDC-P) domain: Glycine dehydrogenase subunit 2 (P-protein) species: Thermus thermophilus [TaxId: 274]
Score = 173 bits (439), Expect = 5e-47
Identities = 56/431 (12%), Positives = 109/431 (25%), Gaps = 41/431 (9%)
Query: 117 VGLDNLDSLIDATVPKSIRIDSMKFSKFD-EGLTESQMIEHMQKLASMNK-VYKSFIGMG 174
+ L + +PK + + E ++ H L+ V +F +G
Sbjct: 16 LKLVKAVPKAEDLIPKEHLREV----PPRLPEVDELTLVRHYTGLSRRQVGVDTTFYPLG 71
Query: 175 YYNTHVPPVILRNIMENPAWYTQYTPYQ-AEIAQGRLESLLNFQTMIADLTGLPMSNASL 233
P + E + PYQ AQG L + + LTG+
Sbjct: 72 SCTMKYNPKL---HEEAARLFADLHPYQDPRTAQGALRLMWELGEYLKALTGMDAITLEP 128
Query: 234 LDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTI-------------DICITRADGFD 280
+ + + + + P + + +
Sbjct: 129 AAGAHGELTGILIIRAYHEDRGEGRTRRVVLVPDSAHGSNPATASMAGYQVREIPSGPEG 188
Query: 281 IKVVVSDLKDIDYKSGDVCGVLVQYPGTEGEVLDYGDFIKNAHANGVKVVMATDLLALTI 340
+ + +++ + G + + + A +
Sbjct: 189 EVDLEALKRELGPHVAALMLTNPNTLGLFERRILEISRLCKEAGVQLYYDGANLNAIMGW 248
Query: 341 LKPPGELGADIVVGSAQRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPAL 400
+P + + + F VP G GGP + + +P +V
Sbjct: 249 ARPGDMGFDVVHLNLHKTFTVPHGGGGPGSGPVGVKAHLAPYLPVPLVE------RGEEG 302
Query: 401 RVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALG 460
R + I R + L A Y G EGLK A A
Sbjct: 303 FYLDFDRPKSIGRVR----SFYGNFLALVRAWAYIRTLGLEGLKKAAALAVLNARYLKEL 358
Query: 461 LKKLGTVEVQGLPFFDTVKVKCA---DAHAIASAA-----YKIEMNLRVVDSNTVTASFD 512
LK+ G P + A +A + + ++ +
Sbjct: 359 LKEKGYRVPYDGPSMHEFVAQPPEGFRALDLAKGLLELGFHPPTVYFPLIVKEALMVEPT 418
Query: 513 ETTTLEDVDKL 523
ET E ++
Sbjct: 419 ETEAKETLEAF 429
|
| >d1wyua1 c.67.1.7 (A:1-437) Glycine dehydrogenase (decarboxylating) subunit 1 {Thermus thermophilus [TaxId: 274]} Length = 437 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Glycine dehydrogenase subunits (GDC-P) domain: Glycine dehydrogenase (decarboxylating) subunit 1 species: Thermus thermophilus [TaxId: 274]
Score = 278 bits (712), Expect = 5e-85
Identities = 142/437 (32%), Positives = 215/437 (49%), Gaps = 19/437 (4%)
Query: 104 SATPEDQAKMSELVGLDNLDSLIDATVPKSIRIDSMKFSKFDEGLTESQMIEHMQKLASM 163
T E+ +M VG +L+ L +PK I + E L E +++E +++LA+
Sbjct: 5 PHTEEEIREMLRRVGAASLEDLFA-HLPKEILSPPIDL---PEPLPEWKVLEELRRLAAQ 60
Query: 164 N-KVYKSFIGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIAD 222
N +K+F+G G + HVPPV+ + + + T YTPYQ E++QG L++ +QTMIA+
Sbjct: 61 NLPAHKAFLGGGVRSHHVPPVV-QALAARGEFLTAYTPYQPEVSQGVLQATFEYQTMIAE 119
Query: 223 LTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIK 282
L GL ++NAS+ D TA AE + + ++ + +++ HP+ + + K
Sbjct: 120 LAGLEIANASMYDGATALAEGVLLAL--RETGRMGVLVSQGVHPEYRAVLRAYLEAVGAK 177
Query: 283 VVVS----DLKDIDYKSGDVCGVLVQYPGTEGEVLDYGDFIKNAHANGVKVVMATDLLAL 338
++ + +V V+VQ P G + D G F + AH G V D L+L
Sbjct: 178 LLTLPLEGGRTPLPEVGEEVGAVVVQNPNFLGALEDLGPFAEAAHGAGALFVAVADPLSL 237
Query: 339 TILKPPGELGADIVVGSAQRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKP 398
+LKPPG GADI VG Q G+PMG+GGPH FLAT + + R +PGR+V ++D G+
Sbjct: 238 GVLKPPGAYGADIAVGDGQSLGLPMGFGGPHFGFLATKKAFVRQLPGRLVSETVDVEGRR 297
Query: 399 ALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFA 458
+ +Q REQ+IRR KA SNI T L A M AMY GPEGL+ +A + +A
Sbjct: 298 GFILTLQAREQYIRRAKAKSNITTNAQLTALMGAMYLAALGPEGLREVALKSVEMAHKLH 357
Query: 459 LGLKKLGTVE-VQGLPFFDTVKVKC-ADAHAIASAA--YKI---EMNLRVVDSNTVTASF 511
L ++ V PFF+ + D A+ A R N +
Sbjct: 358 ALLLEVPGVRPFTPKPFFNEFALALPKDPEAVRRALAERGFHGATPVPREYGENLALFAA 417
Query: 512 DETTTLEDVDKLFIVFA 528
E ED+ L
Sbjct: 418 TELHEEEDLLALREALK 434
|
| >d1wyua1 c.67.1.7 (A:1-437) Glycine dehydrogenase (decarboxylating) subunit 1 {Thermus thermophilus [TaxId: 274]} Length = 437 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Glycine dehydrogenase subunits (GDC-P) domain: Glycine dehydrogenase (decarboxylating) subunit 1 species: Thermus thermophilus [TaxId: 274]
Score = 260 bits (664), Expect = 4e-78
Identities = 72/433 (16%), Positives = 142/433 (32%), Gaps = 41/433 (9%)
Query: 537 AASLAEEVETAIPSGLTRESPYLTHPVFNKYHTEHELLRYIHLLQSKELSLCHSMIPLGS 596
AASL E++ +P + L P+ E ++L + L ++ L + + G
Sbjct: 20 AASL-EDLFAHLPKEILSPPIDLPEPL-----PEWKVLEELRRLAAQNLPAHKAFLGGGV 73
Query: 597 CTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFDSFSLQPNA 656
+ + + + F + + +QG + + + G + +
Sbjct: 74 RSHHVPPVVQAL-AARGEFLTAYTPYQPEVSQGVLQATFEYQTMIAELAGLEIANASMYD 132
Query: 657 GAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKGNIN 716
GA G+++ G + A G K++ +
Sbjct: 133 GATALAEGVLLALRETGRMGVLVS--QGVHPEYRAVLRAYLEAVGAKLL--------TLP 182
Query: 717 IEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGL 776
+E R + + ++V P+ G E G +++ A+ + L
Sbjct: 183 LEGGRTPLPEVGEEVGAVVVQNPNFLGALE--DLGPFAEAAHGAGALFVAVADPLSLGVL 240
Query: 777 TSPGYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFL---PSHPVVSTGGIPA- 832
PG GAD+ + ++ +P G GGP G + KK L V G
Sbjct: 241 KPPGAYGADIAVGD-GQSLGLPMGFGGPHFGFLATKKAFVRQLPGRLVSETVDVEGRRGF 299
Query: 833 -------PEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKR 885
+ + + + L + Y+A +G +GL E + ++ A+ +
Sbjct: 300 ILTLQAREQYIRRAKAKSNITTNAQLTALMGAMYLAALGPEGLREVALKSVEMAHKLHAL 359
Query: 886 LEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMS--WPVPG 943
L + + +EF + L +PE V + L + GFHG T
Sbjct: 360 LLEVPGVR-PFTPKPFFNEFALAL-------PKDPEAVRRALAERGFHGATPVPREYGEN 411
Query: 944 TLMIEPTESESKS 956
+ TE +
Sbjct: 412 LALFAATELHEEE 424
|
| >d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mus musculus) [TaxId: 10090]} Length = 445 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Mouse (Mus musculus) [TaxId: 10090]
Score = 157 bits (397), Expect = 7e-42
Identities = 46/441 (10%), Positives = 109/441 (24%), Gaps = 56/441 (12%)
Query: 559 LTHPVFNKYH------TEHELLRYIHLLQSKELSLCHSMIPLGSCTMKLNA-----TTEM 607
L + + E L ++H L + + +G ++ +
Sbjct: 9 LIRLLLEQGKCPEDGWDESTLELFLHELAVMDSNNFLGNCGVGEREGRVASALVARRHYR 68
Query: 608 MPVTWPSFANIHPFAP-ADQAQGYQEMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLM 666
+I P A + ++ N+L + + G S + A + +
Sbjct: 69 FIHGIGRSGDISAVQPKAAGSSLLNKITNSLVLNVIKLAGVHSVASCFVVPMATGMSLTL 128
Query: 667 VIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSV---GTDAKGNINIEELRKA 723
R I P + + G + V + + +++ +
Sbjct: 129 CFLTLRHKRPK--AKYIIWPRIDQKSCFKSMVTAGFEPVVIENVLEGDELRTDLKAVEAK 186
Query: 724 AEANRD-NLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSP--- 779
+ ++ L T + ++E+ I + ++ A
Sbjct: 187 IQELGPEHILCLHSTTACFAPRVPDRLEELAVICANYDIPHVVNNAYGLQSSKCMHLIQQ 246
Query: 780 --GYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQ 837
D +L K F +P GG + ++ P
Sbjct: 247 GARVGRIDAFVQSLDKNFMVPVGGAIIAGFNEPFIQDISKMYP----------------- 289
Query: 838 PLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGV 897
SA + +G G + K Y++ +L+K +
Sbjct: 290 --------GRASASPSLDVLITLLSLGCSGYRKLLKERKEMFVYLSTQLKKLAEAHNERL 341
Query: 898 NGT--VAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPT----- 950
T + L+ + + L G + T
Sbjct: 342 LQTPHNPISLAMTLKTIDGHHDKAVTQLGSMLFTRQVSGARAVPLGNVQTVSGHTFRGFM 401
Query: 951 -ESESKSWTGIVMLSSPSEKK 970
+++ + ++ K
Sbjct: 402 SHADNYPCAYLNAAAAIGMKM 422
|
| >d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mus musculus) [TaxId: 10090]} Length = 445 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Mouse (Mus musculus) [TaxId: 10090]
Score = 75.8 bits (185), Expect = 7e-15
Identities = 56/417 (13%), Positives = 118/417 (28%), Gaps = 45/417 (10%)
Query: 145 DEGLTESQMIEHMQKLASMN-KVYKSFIGMGYYNTHVPPVILRNIMEN----PAWYTQYT 199
++G ES + + +LA M+ + G+G V ++ +
Sbjct: 21 EDGWDESTLELFLHELAVMDSNNFLGNCGVGEREGRVASALVARRHYRFIHGIGRSGDIS 80
Query: 200 PYQAEIAQGRLESLL--NFQTMIADLTGLP-MSNASLLDEGTAAAEAMAMCNNIQKGKKK 256
Q + A L + + + + L G+ +++ ++ T + + K K
Sbjct: 81 AVQPKAAGSSLLNKITNSLVLNVIKLAGVHSVASCFVVPMATGMSLTLCFLTLRHKRPKA 140
Query: 257 TFIIAS-NCHPQTIDICITRADGFDIKVVVSDLKDID--------------YKSGDVCGV 301
+II +T GF+ V+ + L+ + + +
Sbjct: 141 KYIIWPRIDQKSCFKSMVTA--GFEPVVIENVLEGDELRTDLKAVEAKIQELGPEHILCL 198
Query: 302 LVQYPGTE-GEVLDYGDFIKNAHANGVK-VVMATDLLALTILKPPGEL-----GADIVVG 354
+ + VV L + + D V
Sbjct: 199 HSTTACFAPRVPDRLEELAVICANYDIPHVVNNAYGLQSSKCMHLIQQGARVGRIDAFVQ 258
Query: 355 SAQR-FGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRR 413
S + F VP+G Q+ +M PGR + S +++
Sbjct: 259 SLDKNFMVPVGGAIIAGFNEPFIQDISKMYPGR--ASASPSLDVLITLLSLGCSGYRKLL 316
Query: 414 DKATSNICTAQALLANMAAMY--AVYHGPEGLKTIAQRVHGLAGTFALGLKKLG----TV 467
+ L +A + + P ++A + + G + +LG T
Sbjct: 317 KERKEMFVYLSTQLKKLAEAHNERLLQTPHNPISLAMTLKTIDGHHDKAVTQLGSMLFTR 376
Query: 468 EVQGLPFFDTVKVKCADAHAIASAAYKIEMNLRVVDSNTVTASFDETTTLEDVDKLF 524
+V G V+ H + + A+ ++DVD
Sbjct: 377 QVSGARAVPLGNVQTVSGHTFRGFMSHADN----YPCAYLNAAAAIGMKMQDVDLFI 429
|
| >d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS) {Methanococcus maripaludis [TaxId: 39152]} Length = 434 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Methanococcus maripaludis [TaxId: 39152]
Score = 152 bits (384), Expect = 3e-40
Identities = 59/430 (13%), Positives = 112/430 (26%), Gaps = 68/430 (15%)
Query: 539 SLAEEVETAIPSGLTRESPYLTHPVF-NKYHTEHELLRYIHLLQSKELSLCHSMIPLGSC 597
++ + E + L H + ++ ++ L + + +G
Sbjct: 13 NMEKRGELVLNEYLKEIEDVFNHRKIPENGIDDEKIKLFLKFLSMMDTDKDPKSVRIGER 72
Query: 598 TMKLNATTEMMPVTW--------PSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFDS 649
+ + + + + P A A + N + E G +
Sbjct: 73 EARTYSKIHEELSSGFCHGIGRSGNLVDPQPKAS--GASIMYALTNKILESFFKQLGLNV 130
Query: 650 -FSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVG 708
P + L R + NV I P ++H + + GM + V
Sbjct: 131 HAIATPISTGMSISLCLSAARKKY------GSNVVIYPYASHKSPIKAVSFVGMNMRLVE 184
Query: 709 T---DAKGNINIEELRKAAEANRD--NLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQV 763
T + + +E++ A + + N ++ T + I EI KI +
Sbjct: 185 TVLDGDRVYVPVEDIENAIKKEIELGNRPCVLSTLTFFPPRNSDDIVEIAKICENYDIPH 244
Query: 764 YMDGANMNAQV----GLTSPGYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFL 819
++GA L D + K P GGG K ++
Sbjct: 245 IINGAYAIQNNYYLEKLKKAFKYRVDAVVSSSDKNLLTPIGGGLVYSTDAEFIKEISLSY 304
Query: 820 PSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNA 879
P SA + + + MGSK E K +
Sbjct: 305 P-------------------------GRASATPVVNTLVSLLSMGSKNYLELVKNQKNSK 339
Query: 880 NYMAKRLEK------------HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRL 927
+ + L PI + E L L + K+
Sbjct: 340 KLLDELLNDLSKKTGGKFLDVESPIASCISVNSDPVEIAAKLYNL----RVTGPRGIKKT 395
Query: 928 MDYGFHGPTM 937
+G
Sbjct: 396 DHFGNCYLGT 405
|
| >d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS) {Methanococcus maripaludis [TaxId: 39152]} Length = 434 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Methanococcus maripaludis [TaxId: 39152]
Score = 98.8 bits (245), Expect = 2e-22
Identities = 54/449 (12%), Positives = 118/449 (26%), Gaps = 63/449 (14%)
Query: 106 TPEDQAKMSELVGLDNLDSLIDATVPKSIRIDSMKFSKF-DEGLTESQMIEHMQKLASMN 164
E + ++ L ++ + K + G+ + ++ ++ L+ M+
Sbjct: 13 NMEKRGELVLNEYLKEIEDV-------------FNHRKIPENGIDDEKIKLFLKFLSMMD 59
Query: 165 -KVYKSFIGMGYYNTHVPPVILR----NIMENPAWYTQYTPYQAEIAQGRLESLLNFQ-- 217
+ +G I Q + + + L +
Sbjct: 60 TDKDPKSVRIGEREARTYSKIHEELSSGFCHGIGRSGNLVDPQPKASGASIMYALTNKIL 119
Query: 218 TMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTI-------- 269
GL +A T + ++ + +K I H I
Sbjct: 120 ESFFKQLGLN-VHAIATPISTGMSISLCLSAARKKYGSNVVIYPYASHKSPIKAVSFVGM 178
Query: 270 --DICITRADGFDIKVVVSDLKDI---DYKSGDVCGVLVQYPGTE-GEVLDYGDFIKNAH 323
+ T DG + V V D+++ + + G+ VL D + K
Sbjct: 179 NMRLVETVLDGDRVYVPVEDIENAIKKEIELGNRPCVLSTLTFFPPRNSDDIVEIAKICE 238
Query: 324 ANGVKVV-----MATDLLALTILKPPGELGADIVVGSAQR-FGVPMGYGGPHAAFLATSQ 377
+ + + L LK + D VV S+ + P+G G ++ +
Sbjct: 239 NYDIPHIINGAYAIQNNYYLEKLKKAFKYRVDAVVSSSDKNLLTPIGGGLVYSTDAEFIK 298
Query: 378 EYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAV- 436
E PGR + ++ ++M ++ ++ LL +++
Sbjct: 299 EISLSYPGRASATPVVNTL--VSLLSMGSKNYLELVKNQKNSKKLLDELLNDLSKKTGGK 356
Query: 437 YHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDTVKVKCADAHAIASAAYKIE 496
+ E V+ A L L
Sbjct: 357 FLDVESPIASCISVNSDPVEIAAKLYNLR-----------------VTGPRGIKKTDHFG 399
Query: 497 M-NLRVVDSNTVTASFDETTTLEDVDKLF 524
L + + + ED+
Sbjct: 400 NCYLGTYTHDYIVMNAAIGVRTEDIVNSV 428
|
| >d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase) {Proteus vulgaris [TaxId: 585]} Length = 465 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tryptophan indol-lyase (tryptophanase) species: Proteus vulgaris [TaxId: 585]
Score = 138 bits (349), Expect = 2e-35
Identities = 43/365 (11%), Positives = 95/365 (26%), Gaps = 35/365 (9%)
Query: 622 APADQAQGYQEMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRN 681
D+A + +L + + +D + + + G E V+ Y + G
Sbjct: 65 ITGDEAYAGSRNYYDLKDKAKELFNYD-YIIPAHQGRGAENILFPVLLKYKQKEGKAKNP 123
Query: 682 VCIIPVSAHGTNPATAAMCGMKIVSVGTDA----------KGNINIEELRKAAEANRDNL 731
V I T A + G K +++ T+ KG+ +I++L++ + +
Sbjct: 124 V-FISNFHFDTTAAHVELNGCKAINIVTEKAFDSETYDDWKGDFDIKKLKENIAQHGADN 182
Query: 732 STLMVTYPSTHGVY-----EEGIDEICKIIHDNGGQVYMDGANMNAQVGLT--------- 777
+V+ + + + E+ +I +G V MD A
Sbjct: 183 IVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSARFCENAYFIKARDPKYKN 242
Query: 778 -SPGYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKS 836
+ + D+ T G + ++ + F +
Sbjct: 243 ATIKEVIFDMYKYADALTMSAKKDPLLNIGGLVAIRDNEEIFTLARQRCVPMEGFVTYGG 302
Query: 837 QPLGTIAAAPWGSALIL-PISYTYIAMMGSK---GLTEASKIAILNANYMAKRLEKHYPI 892
+AA G Y L EA A ++
Sbjct: 303 LAGRDMAAMVQGLEEGTEEEYLHYRIGQVKYLGDRLREAGIPIQYPTGGHAVFVDCKK-- 360
Query: 893 LFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMI-EPTE 951
+ L +G+ ++ L+ + +
Sbjct: 361 -LVPQIPGDQFPAQAVINALYLESGVRAVEIGSFLLGRDPATGEQKHADMEFMRLTIARR 419
Query: 952 SESKS 956
+
Sbjct: 420 VYTND 424
|
| >d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase) {Escherichia coli [TaxId: 562]} Length = 467 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tryptophan indol-lyase (tryptophanase) species: Escherichia coli [TaxId: 562]
Score = 120 bits (302), Expect = 2e-29
Identities = 50/437 (11%), Positives = 106/437 (24%), Gaps = 64/437 (14%)
Query: 561 HPVFNKYHTEHELLRYIHLLQSKELSLCHSMIPLGSCTMKLNATTEMMPVTWPSFANIHP 620
PV E + L I L + + T + +
Sbjct: 13 EPVKRTTRAYREEAIIKSGMNPFLLDSEDVFIDLLTDS----GTGAVTQSMQAAMM---- 64
Query: 621 FAPADQAQGYQEMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHR 680
D+A + L E + I G+ +++ + G E + V+ + R
Sbjct: 65 --RGDEAFSGSRSYYALAESVKNIFGYQ-YTIPTHQGRGAEQIYIPVLIKKREQEKGLDR 121
Query: 681 NVCIIPVSA-HGTNPATAAMCGMKIVSVGTDA----------KGNINIEELRKAAEANRD 729
+ + + T + + G + +V KGN ++E L + E
Sbjct: 122 SKMVAFSNYFFDTTQGHSQINGCTVRNVYIKEAFDTGVRYDFKGNFDLEGLERGIEEVGP 181
Query: 730 NLSTLMVTYPSTHGVY-----EEGIDEICKIIHDNGGQVYMDGANMNAQVGLT------- 777
N +V +++ + + I V MD A
Sbjct: 182 NNVPYIVATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVMDSARFAENAYFIKQREAEY 241
Query: 778 ---SPGYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPE 834
+ I + P G + +K + +
Sbjct: 242 KDWTIEQITRETYKYADMLAMSAKKDAMVPMGGLLCMKDDSFFDVYTEC----------- 290
Query: 835 KSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILF 894
P L + + I Y+ LE+ +
Sbjct: 291 -RTLCVVQEGFPTYGGLEGGAMERLAVGLYDGMNLDWLAYRIAQVQYLVDGLEEIGVVCQ 349
Query: 895 RGVNGTV---AHEFIVDLRGLKNT-----------AGIEPEDVAKRLMDYGFHGPTMSWP 940
+ A + + + + AGI ++ L+
Sbjct: 350 QAGGHAAFVDAGKLLPHIPADQFPAQALACELYKVAGIRAVEIGSFLLGRDPKTGKQLPC 409
Query: 941 VPGTLMIE-PTESESKS 956
L + P + +++
Sbjct: 410 PAELLRLTIPRATYTQT 426
|
| >d1pmma_ c.67.1.6 (A:) Glutamate decarboxylase beta, GadB {Escherichia coli [TaxId: 562]} Length = 450 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Pyridoxal-dependent decarboxylase domain: Glutamate decarboxylase beta, GadB species: Escherichia coli [TaxId: 562]
Score = 116 bits (290), Expect = 7e-28
Identities = 40/350 (11%), Positives = 91/350 (26%), Gaps = 39/350 (11%)
Query: 632 EMFNNLGEWLCTITGFDSFSLQPNAG---AAGEYAGLMVIRAY-------HKARGDHHRN 681
+ + + + G A ++ A +A G
Sbjct: 93 AIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWRWRKRMEAAGKPTDK 152
Query: 682 VCIIPVSAHGTNPATAAMCGMKIVSVGTDAK-GNINIEELRKAAEANRDNLSTLMVTYPS 740
++ A +++ + ++ + + +A + N + +
Sbjct: 153 PNLVCGPVQICWHKFARYWDVELREIPMRPGQLFMDPKRMIEACDENTIGVVPTFGVTYT 212
Query: 741 THGVYEEGIDEICKII---HDNGGQVYMDGANMNAQVGLTSP------GYIGADVCHLNL 791
+ + + + + +++D A+ +P +
Sbjct: 213 GNYEFPQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFVAPDIVWDFRLPRVKSISASG 272
Query: 792 HKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSAL 851
HK P G G F + +GT A A
Sbjct: 273 HKFGLAPLGCGWVIWRDEEALPQELVFNVDYL------------GGQIGTFAINFSRPAG 320
Query: 852 ILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK--HYPILFRGVNGTVAHEFIVDL 909
+ Y +G +G T+ + A Y+A + K Y + G L
Sbjct: 321 QVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIAKLGPYEFICTGRPDEGIPAVCFKL 380
Query: 910 RGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGT----LMIEPTESESK 955
+ ++ G D+++RL G+ P + T + I
Sbjct: 381 KDGEDP-GYTLYDLSERLRLRGWQVPAFTLGGEATDIVVMRIMCRRGFEM 429
|
| >d1js3a_ c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]} Length = 476 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Pyridoxal-dependent decarboxylase domain: DOPA decarboxylase species: Pig (Sus scrofa) [TaxId: 9823]
Score = 79.5 bits (195), Expect = 6e-16
Identities = 40/294 (13%), Positives = 83/294 (28%), Gaps = 33/294 (11%)
Query: 625 DQAQGYQEMFNNLGEWLCTITGFDSFSLQPNAGAAG----------EYAGLMVIRAYHKA 674
+ E+ + +WL + L AG G L+ R
Sbjct: 106 AASPACTELETVMMDWLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTKVVR 165
Query: 675 R-----------GDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKGNINIEELRKA 723
R + V AH + + G+K+ ++ +D K + L++A
Sbjct: 166 RLQAASPGLTQGAVLEKLVAYASDQAHSSVERAGLIGGVKLKAIPSDGKFAMRASALQEA 225
Query: 724 AEANRDNLST---LMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSP- 779
E ++ ++ T +T + + E+ I H+ +++D A +
Sbjct: 226 LERDKAAGLIPFFVVATLGTTSCCSFDNLLEVGPICHEEDIWLHVDAAYAGSAFICPEFR 285
Query: 780 ----GYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEK 835
G AD + N HK + + + L PV
Sbjct: 286 HLLNGVEFADSFNFNPHKWLLVNFDCSAMWVKR---RTDLTGAFKLDPVYLKHSHQGSGL 342
Query: 836 SQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKH 889
L + + + KGL + + ++ + +
Sbjct: 343 ITDYRHWQLPLGRRFRSLKMWFVFRMYG-VKGLQAYIRKHVQLSHEFEAFVLQD 395
|
| >d1jf9a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Escherichia coli [TaxId: 562]} Length = 405 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: NifS-like protein/selenocysteine lyase species: Escherichia coli [TaxId: 562]
Score = 40.3 bits (93), Expect = 0.001
Identities = 52/332 (15%), Positives = 88/332 (26%), Gaps = 41/332 (12%)
Query: 220 IADLTGLPMSNASLLDEGTAAA--EAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRAD 277
+ + + GT N II+ H I
Sbjct: 75 ASLFINARSAEELVFVRGTTEGINLVANSWGNSNVRAGDNIIISQMEHHANIVPWQMLCA 134
Query: 278 --GFDIKVV------VSDLKDIDYK-SGDVCGVLVQYPGTE-GEVLDYGDFIKNAHANGV 327
G +++V+ L+ + + + + G + I AH +G
Sbjct: 135 RVGAELRVIPLNPDGTLQLETLPTLFDEKTRLLAITHVSNVLGTENPLAEMITLAHQHGA 194
Query: 328 KVVMATDLLALTILKPPGELGADIVVGSAQRFGVPMGYGGPHAAFLATSQEYKRMMPGRI 387
KV++ + L D V S + P G G + + +
Sbjct: 195 KVLVDGAQAVMHHPVDVQALDCDFYVFSGHKLYGPTGIGILYV-------KEALLQEMPP 247
Query: 388 VGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIA 447
+L + R + T N L A + + A GL IA
Sbjct: 248 WEGGGSMIATVSLSEGTTWTKAPWRFEAGTPNTGGIIGLGAALEYVSA-----LGLNNIA 302
Query: 448 QRVHGLAGTFALGLKKLGTVEVQG-----------LPFFDTVKVKCA-DAHAIA----SA 491
+ L L+ + + + G L V D + IA
Sbjct: 303 EYEQNLMHYALSQLESVPDLTLYGPQNRLGVIAFNLGKHHAYDVGSFLDNYGIAVRTGHH 362
Query: 492 AYKIEMNLRVVDSNTVTASFDETTTLEDVDKL 523
M V + AS T E+VD+L
Sbjct: 363 CAMPLMAYYNVPA-MCRASLAMYNTHEEVDRL 393
|
| >d1p3wa_ c.67.1.3 (A:) Cysteine desulfurase IscS {Escherichia coli [TaxId: 562]} Length = 391 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cysteine desulfurase IscS species: Escherichia coli [TaxId: 562]
Score = 39.1 bits (90), Expect = 0.002
Identities = 47/321 (14%), Positives = 89/321 (27%), Gaps = 26/321 (8%)
Query: 220 IADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGF 279
IADL G T + KK II S + + + +
Sbjct: 57 IADLVGADPREIVFTSGATESDNLAIKGAANFYQKKGKHIITSKTEHKAVLDTCRQLERE 116
Query: 280 DIKVV---VSDLKDIDYK------SGDVCGVLVQYPGTE-GEVLDYGDFIKNAHANGVKV 329
+V ID K D V + + E G V D + A G+
Sbjct: 117 GFEVTYLAPQRNGIIDLKELEAAMRDDTILVSIMHVNNEIGVVQDIAAIGEMCRARGIIY 176
Query: 330 VMATDLLALTILKPPGELGADIVVGSAQRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVG 389
+ + +L D++ S + YG L ++ + + ++ G
Sbjct: 177 HVDATQSVGKLPIDLSQLKVDLMSFSGHKI-----YGPKGIGALYVRRKPRVRIEAQMHG 231
Query: 390 VSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAA-MYAVYHGPEGLKTIAQ 448
+ + Q A + T L + ++ E +
Sbjct: 232 GGHERGMRSGTLPVHQIVGMGEAYRIAKEEMATEMERLRGLRNRLWNGIKDIEEVYLNGD 291
Query: 449 RVHGLAGTFALGLKKLGTVEVQGLPFFDTVKVKCADAHAIASAAYKIEMNLRV------V 502
HG + + + + + A SA+ + LR +
Sbjct: 292 LEHGAPNILNVSFNYVEGESL----IMALKDLAVSSGSACTSASLEPSYVLRALGLNDEL 347
Query: 503 DSNTVTASFDETTTLEDVDKL 523
+++ S TT E++D
Sbjct: 348 AHSSIRFSLGRFTTEEEIDYT 368
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 985 | |||
| d1wyua1 | 437 | Glycine dehydrogenase (decarboxylating) subunit 1 | 100.0 | |
| d1wyub1 | 471 | Glycine dehydrogenase subunit 2 (P-protein) {Therm | 100.0 | |
| d1wyua1 | 437 | Glycine dehydrogenase (decarboxylating) subunit 1 | 100.0 | |
| d1wyub1 | 471 | Glycine dehydrogenase subunit 2 (P-protein) {Therm | 100.0 | |
| d2z67a1 | 434 | Selenocysteinyl-tRNA synthase (SepSecS) {Methanoco | 100.0 | |
| d1elua_ | 381 | Cystine C-S lyase C-des {Synechocystis sp. [TaxId: | 99.97 | |
| d1jf9a_ | 405 | NifS-like protein/selenocysteine lyase {Escherichi | 99.97 | |
| d2z67a1 | 434 | Selenocysteinyl-tRNA synthase (SepSecS) {Methanoco | 99.96 | |
| d1t3ia_ | 408 | Probable cysteine desulfurase SufS {Synechocystis | 99.96 | |
| d1pmma_ | 450 | Glutamate decarboxylase beta, GadB {Escherichia co | 99.96 | |
| d1jf9a_ | 405 | NifS-like protein/selenocysteine lyase {Escherichi | 99.94 | |
| d1t3ia_ | 408 | Probable cysteine desulfurase SufS {Synechocystis | 99.94 | |
| d3bc8a1 | 445 | Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mu | 99.94 | |
| d1js3a_ | 476 | DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823] | 99.94 | |
| d1p3wa_ | 391 | Cysteine desulfurase IscS {Escherichia coli [TaxId | 99.93 | |
| d1elua_ | 381 | Cystine C-S lyase C-des {Synechocystis sp. [TaxId: | 99.92 | |
| d1p3wa_ | 391 | Cysteine desulfurase IscS {Escherichia coli [TaxId | 99.91 | |
| d1qz9a_ | 404 | Kynureninase {Pseudomonas fluorescens [TaxId: 294] | 99.9 | |
| d1eg5a_ | 376 | NifS-like protein/selenocysteine lyase {Thermotoga | 99.9 | |
| d1h0ca_ | 388 | Alanine-glyoxylate aminotransferase {Human (Homo s | 99.89 | |
| d1qz9a_ | 404 | Kynureninase {Pseudomonas fluorescens [TaxId: 294] | 99.88 | |
| d3bc8a1 | 445 | Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mu | 99.88 | |
| d1h0ca_ | 388 | Alanine-glyoxylate aminotransferase {Human (Homo s | 99.87 | |
| d1m32a_ | 361 | 2-aminoethylphosphonate transaminase {Salmonella t | 99.87 | |
| d2bwna1 | 396 | 5-aminolevulinate synthase {Rhodobacter capsulatus | 99.87 | |
| d1eg5a_ | 376 | NifS-like protein/selenocysteine lyase {Thermotoga | 99.87 | |
| d2e7ja1 | 364 | Selenocysteinyl-tRNA synthase (SepSecS) {Archaeogl | 99.86 | |
| d2bkwa1 | 382 | Alanine-glyoxylate aminotransferase {Baker's yeast | 99.86 | |
| d1fc4a_ | 401 | 2-amino-3-ketobutyrate CoA ligase {Escherichia col | 99.85 | |
| d1bs0a_ | 383 | PLP-dependent acyl-CoA synthase (8-amino-7-oxonano | 99.85 | |
| d1kl1a_ | 405 | Serine hydroxymethyltransferase {Bacillus stearoth | 99.85 | |
| d1dfoa_ | 416 | Serine hydroxymethyltransferase {Escherichia coli | 99.84 | |
| d1pmma_ | 450 | Glutamate decarboxylase beta, GadB {Escherichia co | 99.84 | |
| d1vjoa_ | 377 | Alanine-glyoxylate aminotransferase {Cyanobacteria | 99.83 | |
| d2ch1a1 | 388 | 3-hydroxykynurenine transaminase {Malaria mosquito | 99.83 | |
| d1m32a_ | 361 | 2-aminoethylphosphonate transaminase {Salmonella t | 99.82 | |
| d1iuga_ | 348 | Subgroup IV putative aspartate aminotransferase {T | 99.82 | |
| d1fc4a_ | 401 | 2-amino-3-ketobutyrate CoA ligase {Escherichia col | 99.81 | |
| d2bwna1 | 396 | 5-aminolevulinate synthase {Rhodobacter capsulatus | 99.81 | |
| d1vjoa_ | 377 | Alanine-glyoxylate aminotransferase {Cyanobacteria | 99.8 | |
| d1bs0a_ | 383 | PLP-dependent acyl-CoA synthase (8-amino-7-oxonano | 99.8 | |
| d1rv3a_ | 470 | Serine hydroxymethyltransferase {Rabbit (Oryctolag | 99.8 | |
| d1js3a_ | 476 | DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823] | 99.79 | |
| d2a7va1 | 463 | Serine hydroxymethyltransferase {Human (Homo sapie | 99.79 | |
| d2e7ja1 | 364 | Selenocysteinyl-tRNA synthase (SepSecS) {Archaeogl | 99.78 | |
| d1c4ka2 | 462 | Ornithine decarboxylase major domain {Lactobacillu | 99.78 | |
| d2ch1a1 | 388 | 3-hydroxykynurenine transaminase {Malaria mosquito | 99.78 | |
| d1j32a_ | 388 | Aspartate aminotransferase, AAT {Phormidium lapide | 99.78 | |
| d2bkwa1 | 382 | Alanine-glyoxylate aminotransferase {Baker's yeast | 99.77 | |
| d2byla1 | 404 | Ornithine aminotransferase {Human (Homo sapiens) [ | 99.76 | |
| d1b5pa_ | 382 | Aspartate aminotransferase, AAT {Thermus thermophi | 99.75 | |
| d1c4ka2 | 462 | Ornithine decarboxylase major domain {Lactobacillu | 99.75 | |
| d1gdea_ | 388 | Aromatic aminoacid aminotransferase, AroAT {Archae | 99.74 | |
| d1v2da_ | 368 | Glutamine aminotransferase {Thermus thermophilus [ | 99.73 | |
| d1iuga_ | 348 | Subgroup IV putative aspartate aminotransferase {T | 99.73 | |
| d1gc0a_ | 392 | Methionine gamma-lyase, MGL {Pseudomonas putida [T | 99.73 | |
| d1y4ia1 | 397 | Methionine gamma-lyase, MGL {Citrobacter freundii | 99.72 | |
| d1vefa1 | 387 | Acetylornithine/acetyl-lysine aminotransferase Arg | 99.72 | |
| d1s0aa_ | 429 | Adenosylmethionine-8-amino-7-oxononanoate aminotra | 99.71 | |
| d1z7da1 | 404 | Ornithine aminotransferase {Plasmodium yoelii yoel | 99.7 | |
| d2gsaa_ | 427 | Glutamate-1-semialdehyde aminomutase (aminotransfe | 99.69 | |
| d1d2fa_ | 361 | Modulator in mal gene expression, MalY {Escherichi | 99.69 | |
| d1c7na_ | 394 | Cystalysin {Treponema denticola [TaxId: 158]} | 99.68 | |
| d1bw0a_ | 412 | Tyrosine aminotransferase (TAT) {Trypanosoma cruzi | 99.68 | |
| d1mdoa_ | 376 | Aminotransferase ArnB {Salmonella typhimurium [Tax | 99.68 | |
| d1sffa_ | 425 | 4-aminobutyrate aminotransferase, GABA-aminotransf | 99.68 | |
| d1qgna_ | 398 | Cystathionine gamma-synthase, CGS {Common tobacco | 99.66 | |
| d1fg7a_ | 354 | Histidinol-phosphate aminotransferase HisC {Escher | 99.66 | |
| d1ax4a_ | 465 | Tryptophan indol-lyase (tryptophanase) {Proteus vu | 99.66 | |
| d1ibja_ | 380 | Cystathionine beta-lyase, CBL {Thale cress (Arabid | 99.65 | |
| d1lc5a_ | 355 | L-threonine-O-3-phosphate decarboxylase CobD {Salm | 99.64 | |
| d1cs1a_ | 384 | Cystathionine gamma-synthase, CGS {Escherichia col | 99.63 | |
| d2aeua1 | 366 | Hypothetical protein MJ0158 {Archaeon Methanococcu | 99.62 | |
| d1iaya_ | 428 | 1-aminocyclopropane-1-carboxylate synthase (ACC sy | 99.62 | |
| d1o4sa_ | 375 | Aspartate aminotransferase, AAT {Thermotoga mariti | 99.62 | |
| d1xi9a_ | 395 | Putative alanine aminotransferase {Pyrococcus furi | 99.62 | |
| d1zoda1 | 431 | Dialkylglycine decarboxylase {Pseudomonas cepacia | 99.62 | |
| d1v72a1 | 345 | Phenylserine aldolase PSALD {Pseudomonas putida [T | 99.62 | |
| d1cl1a_ | 391 | Cystathionine beta-lyase, CBL {Escherichia coli [T | 99.62 | |
| d1y4ia1 | 397 | Methionine gamma-lyase, MGL {Citrobacter freundii | 99.61 | |
| d1u08a_ | 382 | Putative methionine aminotransferase YdbL {Escheri | 99.61 | |
| d1v2da_ | 368 | Glutamine aminotransferase {Thermus thermophilus [ | 99.61 | |
| d1e5ea_ | 394 | Methionine gamma-lyase, MGL {Trichomonas vaginalis | 99.61 | |
| d2r5ea1 | 418 | Kynurenine--oxoglutarate transaminase I {Yellowfev | 99.61 | |
| d2gb3a1 | 389 | AAT homologue TM1698 {Thermotoga maritima [TaxId: | 99.6 | |
| d1pffa_ | 331 | Methionine gamma-lyase, MGL {Trichomonas vaginalis | 99.6 | |
| d1ohwa_ | 461 | 4-aminobutyrate aminotransferase, GABA-aminotransf | 99.6 | |
| d2v1pa1 | 467 | Tryptophan indol-lyase (tryptophanase) {Escherichi | 99.6 | |
| d1gc0a_ | 392 | Methionine gamma-lyase, MGL {Pseudomonas putida [T | 99.6 | |
| d1wsta1 | 403 | Multiple substrate aminotransferase, MSAT {Thermoc | 99.59 | |
| d1m7ya_ | 431 | 1-aminocyclopropane-1-carboxylate synthase (ACC sy | 99.59 | |
| d2ctza1 | 421 | O-acetyl-L-homoserine sulfhydrylase {Thermus therm | 99.58 | |
| d1bjna_ | 360 | Phosphoserine aminotransferase, PSAT {Escherichia | 99.56 | |
| d1vp4a_ | 420 | Putative aminotransferase TM1131 {Thermotoga marit | 99.55 | |
| d1n8pa_ | 393 | Cystathionine gamma-lyase (CYS3) {Baker's yeast (S | 99.54 | |
| d2f8ja1 | 334 | Histidinol-phosphate aminotransferase HisC {Thermo | 99.54 | |
| d1c7ga_ | 456 | Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 5 | 99.54 | |
| d1m6sa_ | 343 | Low-specificity threonine aldolase {Thermotoga mar | 99.54 | |
| d2c0ra1 | 361 | Phosphoserine aminotransferase, PSAT {Bacillus cir | 99.54 | |
| d1b9ha_ | 384 | 3-amino-5-hydroxybenzoic acid synthase (AHBA synth | 99.52 | |
| d1w7la_ | 418 | Kynurenine--oxoglutarate transaminase I {Human (Ho | 99.52 | |
| d1cs1a_ | 384 | Cystathionine gamma-synthase, CGS {Escherichia col | 99.52 | |
| d1mdoa_ | 376 | Aminotransferase ArnB {Salmonella typhimurium [Tax | 99.52 | |
| d1ibja_ | 380 | Cystathionine beta-lyase, CBL {Thale cress (Arabid | 99.52 | |
| d2c0ra1 | 361 | Phosphoserine aminotransferase, PSAT {Bacillus cir | 99.51 | |
| d1w23a_ | 360 | Phosphoserine aminotransferase, PSAT {Bacillus alc | 99.51 | |
| d1lc5a_ | 355 | L-threonine-O-3-phosphate decarboxylase CobD {Salm | 99.5 | |
| d2fnua1 | 371 | Spore coat polysaccharide biosynthesis protein C { | 99.5 | |
| d1e5ea_ | 394 | Methionine gamma-lyase, MGL {Trichomonas vaginalis | 99.5 | |
| d1pffa_ | 331 | Methionine gamma-lyase, MGL {Trichomonas vaginalis | 99.49 | |
| d1bjna_ | 360 | Phosphoserine aminotransferase, PSAT {Escherichia | 99.48 | |
| d1qgna_ | 398 | Cystathionine gamma-synthase, CGS {Common tobacco | 99.46 | |
| d1cl1a_ | 391 | Cystathionine beta-lyase, CBL {Escherichia coli [T | 99.46 | |
| d1o69a_ | 374 | Aminotransferase homolog WlaK (PglE, Cj1121c) {Cam | 99.45 | |
| d1v72a1 | 345 | Phenylserine aldolase PSALD {Pseudomonas putida [T | 99.44 | |
| d1gdea_ | 388 | Aromatic aminoacid aminotransferase, AroAT {Archae | 99.44 | |
| d2aeua1 | 366 | Hypothetical protein MJ0158 {Archaeon Methanococcu | 99.44 | |
| d1svva_ | 340 | Low-specificity threonine aldolase {Leishmania maj | 99.44 | |
| d1b5pa_ | 382 | Aspartate aminotransferase, AAT {Thermus thermophi | 99.44 | |
| d1w23a_ | 360 | Phosphoserine aminotransferase, PSAT {Bacillus alc | 99.44 | |
| d1j32a_ | 388 | Aspartate aminotransferase, AAT {Phormidium lapide | 99.43 | |
| d1m6sa_ | 343 | Low-specificity threonine aldolase {Thermotoga mar | 99.42 | |
| d2f8ja1 | 334 | Histidinol-phosphate aminotransferase HisC {Thermo | 99.42 | |
| d2ctza1 | 421 | O-acetyl-L-homoserine sulfhydrylase {Thermus therm | 99.42 | |
| d1fg7a_ | 354 | Histidinol-phosphate aminotransferase HisC {Escher | 99.37 | |
| d1d2fa_ | 361 | Modulator in mal gene expression, MalY {Escherichi | 99.35 | |
| d2fnua1 | 371 | Spore coat polysaccharide biosynthesis protein C { | 99.34 | |
| d7aata_ | 401 | Aspartate aminotransferase, AAT {Chicken (Gallus g | 99.32 | |
| d1n8pa_ | 393 | Cystathionine gamma-lyase (CYS3) {Baker's yeast (S | 99.3 | |
| d1b9ha_ | 384 | 3-amino-5-hydroxybenzoic acid synthase (AHBA synth | 99.29 | |
| d1ajsa_ | 412 | Aspartate aminotransferase, AAT {Pig (Sus scrofa), | 99.29 | |
| d2gb3a1 | 389 | AAT homologue TM1698 {Thermotoga maritima [TaxId: | 99.29 | |
| d1svva_ | 340 | Low-specificity threonine aldolase {Leishmania maj | 99.28 | |
| d2r5ea1 | 418 | Kynurenine--oxoglutarate transaminase I {Yellowfev | 99.28 | |
| d1yaaa_ | 412 | Aspartate aminotransferase, AAT {Baker's yeast (Sa | 99.25 | |
| d1dfoa_ | 416 | Serine hydroxymethyltransferase {Escherichia coli | 99.22 | |
| d1u08a_ | 382 | Putative methionine aminotransferase YdbL {Escheri | 99.21 | |
| d1wsta1 | 403 | Multiple substrate aminotransferase, MSAT {Thermoc | 99.21 | |
| d1o4sa_ | 375 | Aspartate aminotransferase, AAT {Thermotoga mariti | 99.21 | |
| d1bw0a_ | 412 | Tyrosine aminotransferase (TAT) {Trypanosoma cruzi | 99.2 | |
| d1o69a_ | 374 | Aminotransferase homolog WlaK (PglE, Cj1121c) {Cam | 99.2 | |
| d1kl1a_ | 405 | Serine hydroxymethyltransferase {Bacillus stearoth | 99.19 | |
| d1m7ya_ | 431 | 1-aminocyclopropane-1-carboxylate synthase (ACC sy | 99.18 | |
| d1iaya_ | 428 | 1-aminocyclopropane-1-carboxylate synthase (ACC sy | 99.17 | |
| d1vp4a_ | 420 | Putative aminotransferase TM1131 {Thermotoga marit | 99.17 | |
| d2q7wa1 | 396 | Aspartate aminotransferase, AAT {Escherichia coli | 99.16 | |
| d1xi9a_ | 395 | Putative alanine aminotransferase {Pyrococcus furi | 99.15 | |
| d1w7la_ | 418 | Kynurenine--oxoglutarate transaminase I {Human (Ho | 99.14 | |
| d1c7na_ | 394 | Cystalysin {Treponema denticola [TaxId: 158]} | 99.13 | |
| d3tata_ | 397 | Aromatic aminoacid aminotransferase, AroAT {Escher | 99.12 | |
| d2ay1a_ | 394 | Aromatic aminoacid aminotransferase, AroAT {Paraco | 99.1 | |
| d2a7va1 | 463 | Serine hydroxymethyltransferase {Human (Homo sapie | 99.08 | |
| d1ax4a_ | 465 | Tryptophan indol-lyase (tryptophanase) {Proteus vu | 99.01 | |
| d1rv3a_ | 470 | Serine hydroxymethyltransferase {Rabbit (Oryctolag | 98.98 | |
| d1c7ga_ | 456 | Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 5 | 98.98 | |
| d2hoxa1 | 425 | Alliinase {Garlic (Allium sativum) [TaxId: 4682]} | 98.96 | |
| d2byla1 | 404 | Ornithine aminotransferase {Human (Homo sapiens) [ | 98.95 | |
| d1z7da1 | 404 | Ornithine aminotransferase {Plasmodium yoelii yoel | 98.87 | |
| d1vefa1 | 387 | Acetylornithine/acetyl-lysine aminotransferase Arg | 98.81 | |
| d2v1pa1 | 467 | Tryptophan indol-lyase (tryptophanase) {Escherichi | 98.77 | |
| d7aata_ | 401 | Aspartate aminotransferase, AAT {Chicken (Gallus g | 98.66 | |
| d1sffa_ | 425 | 4-aminobutyrate aminotransferase, GABA-aminotransf | 98.55 | |
| d1s0aa_ | 429 | Adenosylmethionine-8-amino-7-oxononanoate aminotra | 98.55 | |
| d1ajsa_ | 412 | Aspartate aminotransferase, AAT {Pig (Sus scrofa), | 98.54 | |
| d2hoxa1 | 425 | Alliinase {Garlic (Allium sativum) [TaxId: 4682]} | 98.52 | |
| d2gsaa_ | 427 | Glutamate-1-semialdehyde aminomutase (aminotransfe | 98.51 | |
| d1zoda1 | 431 | Dialkylglycine decarboxylase {Pseudomonas cepacia | 98.39 | |
| d2q7wa1 | 396 | Aspartate aminotransferase, AAT {Escherichia coli | 98.36 | |
| d3tata_ | 397 | Aromatic aminoacid aminotransferase, AroAT {Escher | 98.27 | |
| d2ay1a_ | 394 | Aromatic aminoacid aminotransferase, AroAT {Paraco | 98.27 | |
| d1yaaa_ | 412 | Aspartate aminotransferase, AAT {Baker's yeast (Sa | 98.26 | |
| d1ohwa_ | 461 | 4-aminobutyrate aminotransferase, GABA-aminotransf | 98.21 |
| >d1wyua1 c.67.1.7 (A:1-437) Glycine dehydrogenase (decarboxylating) subunit 1 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Glycine dehydrogenase subunits (GDC-P) domain: Glycine dehydrogenase (decarboxylating) subunit 1 species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=1.5e-87 Score=767.48 Aligned_cols=423 Identities=33% Similarity=0.506 Sum_probs=399.5
Q ss_pred ccCCCCCHHHHHHHHHHhCCCCHHHhhhhcCCCccccCCCCCCCCCCCCCHHHHHHHHHHHhcCCCc-cceecCCCCCCC
Q 001989 100 RRHNSATPEDQAKMSELVGLDNLDSLIDATVPKSIRIDSMKFSKFDEGLTESQMIEHMQKLASMNKV-YKSFIGMGYYNT 178 (985)
Q Consensus 100 ~~~~~~~~~~~~~ml~~~g~~~~~~l~~~~ip~~~~~~~~~lp~~~~~~se~e~~~~~~~l~~~n~~-~~~~lG~g~y~~ 178 (985)
+||||||++|+++||++||++|+||||++ ||+++++++++|| +++||.|++||+++|++||.. ..+|+|+|+|.|
T Consensus 1 m~y~p~s~~d~~~mL~~iG~~s~~dl~~~-IP~~~~~~~~~lp---~~~sE~e~~r~~~~ls~kN~~~~~~fig~G~~~~ 76 (437)
T d1wyua1 1 MDYTPHTEEEIREMLRRVGAASLEDLFAH-LPKEILSPPIDLP---EPLPEWKVLEELRRLAAQNLPAHKAFLGGGVRSH 76 (437)
T ss_dssp CCCCCCCHHHHHHHHHHHTCSSTGGGGTT-SCGGGSSCCCCCC---CCCCHHHHHHHHHHHHHTSCCCTTCCCCSSCCCC
T ss_pred CCCCCcCHHHHHHHHHHcCCCCHHHHHHh-ccHHHhcCCCCCC---CCCCHHHHHHHHHHHHhCCCCcCccccCcccCCc
Confidence 58999999999999999999999999986 9999977789997 789999999999999999975 578999999999
Q ss_pred CCcHHHHHHHHhCCccccccCCChhhHhhhHHHHHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEE
Q 001989 179 HVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTF 258 (985)
Q Consensus 179 ~~p~~v~~~i~~~~~~~t~~~pyq~e~sqg~l~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~V 258 (985)
++|+++. ++++|++|+|+|||||||++||+||+++|+|+++|+|+|||.+|+++++|+++.+++++|+.+++ +++++
T Consensus 77 ~~p~~i~-~~~~~~~~~t~ytPyqpE~sQG~Lq~l~e~q~~l~eltGmd~~n~s~~~ga~a~~~~~~~~~~~~--~~~~~ 153 (437)
T d1wyua1 77 HVPPVVQ-ALAARGEFLTAYTPYQPEVSQGVLQATFEYQTMIAELAGLEIANASMYDGATALAEGVLLALRET--GRMGV 153 (437)
T ss_dssp CCCHHHH-HHHTSHHHHHCCSCCSGGGCHHHHHHHHHHHHHHHHHHTSSEECSCBSSHHHHHHHHHHHHHHHH--TCCEE
T ss_pred eeCHHHH-HHHhChhhhhhCCCcchHHHHHHHHHHHHHHHHHHHhhCCCccccCchHHHHHHHHHHHHHHhhh--ccccc
Confidence 9999995 89999999999999999999999999999999999999999999999999999999999998876 67899
Q ss_pred EEcCCCChhHHHHHHHhhcCCCeEEEEeCchhhhc----cCCCEeEEEEEcCCCCeeeccHHHHHHHHHhCCcEEEEEec
Q 001989 259 IIASNCHPQTIDICITRADGFDIKVVVSDLKDIDY----KSGDVCGVLVQYPGTEGEVLDYGDFIKNAHANGVKVVMATD 334 (985)
Q Consensus 259 lv~~~~H~s~~~~~~~~a~~~gi~v~~v~~~~l~~----l~~~t~~V~v~~pn~~G~v~di~~I~~~a~~~galliV~a~ 334 (985)
+++..+||++..++.++++..|++++.+|.++... +++++++|++|+||++|.++|+++|++++|+.|++++++++
T Consensus 154 ~v~~~~~p~~~~v~~t~a~~~g~~vv~v~~~~~~~~~~~~~~~~Aavmi~~Pnt~G~~ed~~~i~~~~h~~G~l~~~~ad 233 (437)
T d1wyua1 154 LVSQGVHPEYRAVLRAYLEAVGAKLLTLPLEGGRTPLPEVGEEVGAVVVQNPNFLGALEDLGPFAEAAHGAGALFVAVAD 233 (437)
T ss_dssp EEETTSCHHHHHHHHHHHHHTTCEEEEECCBTTBCCCCCCCTTEEEEEEESSCTTSBCCCHHHHHHHHHHTTCEEEEECC
T ss_pred ccccccChHHhhhhhhhcccceeeEEeeecccccchhhhhccceeEEEEccccccccccchHHHHHHhhhccceEEeeec
Confidence 99999999999999999999999999998865432 67899999999999999999999999999999999999999
Q ss_pred CccccCCCCCCcccceEEEecCccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeeccccccccccc
Q 001989 335 LLALTILKPPGELGADIVVGSAQRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRD 414 (985)
Q Consensus 335 ~~~lg~l~~~~~~GaDi~v~s~k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre 414 (985)
+.+++++++|+++||||+++++|+||+|+++||||+|+++++++++|++|+|++|.++|.+|+++|++++|+|||||||+
T Consensus 234 ~~al~~l~~Pg~~GaDi~~g~~q~fg~p~g~GGP~~G~~a~~~~l~r~lPgrivg~s~d~~G~~~~~l~lqtreqhIrRe 313 (437)
T d1wyua1 234 PLSLGVLKPPGAYGADIAVGDGQSLGLPMGFGGPHFGFLATKKAFVRQLPGRLVSETVDVEGRRGFILTLQAREQYIRRA 313 (437)
T ss_dssp TTGGGTBCCHHHHTCSEEEEECTTTTCCCGGGCSCCEEEEECGGGGGGCCSCCEEEEEBTTSCEEEEECCGGGSHHHHGG
T ss_pred hhhhhccccccccccceEeeccceeccccCCCcCccccccccchhhccccccccccccccCCcccceeeccccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEc-CCCCcceEEEecCC-HHHHHHHH
Q 001989 415 KATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQ-GLPFFDTVKVKCAD-AHAIASAA 492 (985)
Q Consensus 415 ~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~-~~~~~~~~~~~~~~-~~~v~~~L 492 (985)
||||||||+++++++++++|+.++|++||+++++++..+|+|++++|.+++|++++ +.++|++|+++.+. +.+++++|
T Consensus 314 katsnict~q~l~a~~a~~Y~~~lG~~GL~~ia~~a~~~A~yl~~~L~~~~g~~~~~~~~~f~ef~v~~~~~~~~i~k~L 393 (437)
T d1wyua1 314 KAKSNITTNAQLTALMGAMYLAALGPEGLREVALKSVEMAHKLHALLLEVPGVRPFTPKPFFNEFALALPKDPEAVRRAL 393 (437)
T ss_dssp GSSCCCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTCEECSCSSBCSEEEEECSSCHHHHHHHH
T ss_pred ccccchhhHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHHHHHHhhhcCCeeccCCCCeeeEEEEECCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998559877 45889999999876 99999999
Q ss_pred HHcCceeee-----ecCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 493 YKIEMNLRV-----VDSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 493 ~~~GI~~~~-----~~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
.++||+.+. ...+++++++||.+|+||||+|+++|++
T Consensus 394 ~d~G~~~~~~~~~~~~~~~lli~~TE~~tkeeiD~~v~al~e 435 (437)
T d1wyua1 394 AERGFHGATPVPREYGENLALFAATELHEEEDLLALREALKE 435 (437)
T ss_dssp HHTTCCCCEECCTTSCSSEEEEECCTTCCHHHHHHHHHHHHH
T ss_pred HhCCCCCCcccccCCCCCeEEEecCCCCCHHHHHHHHHHHHH
Confidence 999997543 2358999999999999999999999973
|
| >d1wyub1 c.67.1.7 (B:2-472) Glycine dehydrogenase subunit 2 (P-protein) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Glycine dehydrogenase subunits (GDC-P) domain: Glycine dehydrogenase subunit 2 (P-protein) species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=5.2e-67 Score=605.22 Aligned_cols=389 Identities=18% Similarity=0.215 Sum_probs=322.9
Q ss_pred hCC---CCHHHhhhhcCCCcc-ccCCCCCCCCCCCCCHHHHHHHHHHHhcCCCcc-ceecCCC-CCCCCCcHHHHHHHHh
Q 001989 117 VGL---DNLDSLIDATVPKSI-RIDSMKFSKFDEGLTESQMIEHMQKLASMNKVY-KSFIGMG-YYNTHVPPVILRNIME 190 (985)
Q Consensus 117 ~g~---~~~~~l~~~~ip~~~-~~~~~~lp~~~~~~se~e~~~~~~~l~~~n~~~-~~~lG~g-~y~~~~p~~v~~~i~~ 190 (985)
+|+ +|+||||++ ||+++ ++++++|| ++||.|++|||++|++||... .+|+|+| ||.|++|+++. .+.+
T Consensus 14 ~g~~~~~si~el~~~-IP~~~~~~~~l~LP----~~sE~El~r~~~~la~kN~~~~~~~~~lG~~~~hy~P~v~~-~~~~ 87 (471)
T d1wyub1 14 RGLKLVKAVPKAEDL-IPKEHLREVPPRLP----EVDELTLVRHYTGLSRRQVGVDTTFYPLGSCTMKYNPKLHE-EAAR 87 (471)
T ss_dssp CCCCCCSSCCCHHHH-SCGGGBCSSCCCCC----CCCHHHHHHHHHHHHTTCCCTTTSCCCBTTTCCCCCCHHHH-HHHH
T ss_pred cccCCCCcchhhhhh-CCHHHHcCCCCCCC----CCCHHHHHHHHHHHHhCCCCccccccCCccccCccCcchhh-hHHH
Confidence 564 499999986 99999 89999997 499999999999999999853 5666666 56788888886 6653
Q ss_pred CCccccccCCChh-hHhhhHHHHHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcC----C-CCEEEEcCCC
Q 001989 191 NPAWYTQYTPYQA-EIAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKG----K-KKTFIIASNC 264 (985)
Q Consensus 191 ~~~~~t~~~pyq~-e~sqg~l~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~----~-g~~Vlv~~~~ 264 (985)
|||+|||||| |+|||+||+|||||+|||+|||||++|+|+|||+|+++||++|+.+++++ + ...++++...
T Consensus 88 ---~~TaYTPYQPaEiSQG~LQalfEfQtmi~eLTGMdvaNaS~yDGatA~aeA~~ma~r~~~~~~~~~~~~~~~~~~~~ 164 (471)
T d1wyub1 88 ---LFADLHPYQDPRTAQGALRLMWELGEYLKALTGMDAITLEPAAGAHGELTGILIIRAYHEDRGEGRTRRVVLVPDSA 164 (471)
T ss_dssp ---TTSSCCTTSCGGGCHHHHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHHHHHHHHHHHHTTCTTTCCEEEEETTS
T ss_pred ---HHhccCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCccccccchHHHHHHHHHHHHHHHhhhcccccccccccCCccc
Confidence 8999999996 99999999999999999999999999999999999999999999876421 1 2234444455
Q ss_pred ChhHHHHHHHhhcCCCeEEEEeCc--------hhhhc-cCCCEeEEEEEcCCCCeeec-cHHHHHHHHHhCCcEEEEE-e
Q 001989 265 HPQTIDICITRADGFDIKVVVSDL--------KDIDY-KSGDVCGVLVQYPGTEGEVL-DYGDFIKNAHANGVKVVMA-T 333 (985)
Q Consensus 265 H~s~~~~~~~~a~~~gi~v~~v~~--------~~l~~-l~~~t~~V~v~~pn~~G~v~-di~~I~~~a~~~galliV~-a 333 (985)
|+..... .. ..+.+++.++. ++++. .+++++++++++||++|.++ +++++++++|++|++++++ +
T Consensus 165 ~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~v~v~~p~~~g~~e~~~~~~~~~~h~~g~~~~~~~~ 240 (471)
T d1wyub1 165 HGSNPAT-AS---MAGYQVREIPSGPEGEVDLEALKRELGPHVAALMLTNPNTLGLFERRILEISRLCKEAGVQLYYDGA 240 (471)
T ss_dssp CTHHHHH-HH---HTTCEEEEECBCTTSSBCHHHHHHHCSTTEEEEEECSSCTTSCCCTTHHHHHHHHHHHTCEEEEEGG
T ss_pred ccceeee-ee---cccceeecccccccccccchhhhhhhhccccceeeccCCCcccccchhhhhHHHHHhcccccccccc
Confidence 5444433 33 24566666543 22333 67889999999999999987 4899999999999988874 4
Q ss_pred cCccccCCCCCCcccceEE-EecCccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeeccccccccc
Q 001989 334 DLLALTILKPPGELGADIV-VGSAQRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIR 412 (985)
Q Consensus 334 ~~~~lg~l~~~~~~GaDi~-v~s~k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~ir 412 (985)
++.++..+.+|+++|+|++ ++++|+||+|+++||||+||++++++++|+||||+||.+ +. +.+.+++||||||
T Consensus 241 ~~~~~~~l~~p~~~g~div~vg~~q~~G~P~~~GGP~~G~~a~~~~~~R~~PGRiV~~~-----~~-~~~~~~~REqhIr 314 (471)
T d1wyub1 241 NLNAIMGWARPGDMGFDVVHLNLHKTFTVPHGGGGPGSGPVGVKAHLAPYLPVPLVERG-----EE-GFYLDFDRPKSIG 314 (471)
T ss_dssp GGGGTTTTCCHHHHTCSEEECCTTTTTCCCCTTSCCCCCCEEECGGGGGGCCSCEEEEC-----SS-CEEEECCCTTCCC
T ss_pred chhhhhhccccCcccccccccccccccccccccccccccceeehhhhhccCCCceecCC-----Cc-cccccCCCccccc
Confidence 4455555667777777777 555699999999999999999999999999999999842 33 5555678999999
Q ss_pred ccccCCCccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEc-CCCCcceEEEecCC---HHHH
Q 001989 413 RDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQ-GLPFFDTVKVKCAD---AHAI 488 (985)
Q Consensus 413 re~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~-~~~~~~~~~~~~~~---~~~v 488 (985)
|+ ++||+|++++++|++||+++|++||++++++++++|+|++++|++.| +++. +.++|++|+++.+. +.++
T Consensus 315 Re----~actnqaL~al~A~vYlsllG~~GL~elA~~~~~~A~Yla~~L~~~G-~~~~~~~~ff~EFvv~~~~~~~~~~i 389 (471)
T d1wyub1 315 RV----RSFYGNFLALVRAWAYIRTLGLEGLKKAAALAVLNARYLKELLKEKG-YRVPYDGPSMHEFVAQPPEGFRALDL 389 (471)
T ss_dssp CS----SSTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CBCSSCSSCCSCEEEBCSTTCCHHHH
T ss_pred ch----hhhhhhHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHhhcC-ceeccCcceeeEEeecCCCCCCHHHH
Confidence 98 45999999999999999999999999999999999999999998877 8886 45899999998774 7889
Q ss_pred HHHHHHcCceeee-----ecCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 489 ASAAYKIEMNLRV-----VDSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 489 ~~~L~~~GI~~~~-----~~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
+++|.++||.... ...+++++|+||.+|+||||+|+++|++
T Consensus 390 ~k~L~~~G~~~~~~~~p~~~~~~llv~vTE~~tkedID~lv~aL~~ 435 (471)
T d1wyub1 390 AKGLLELGFHPPTVYFPLIVKEALMVEPTETEAKETLEAFAEAMGA 435 (471)
T ss_dssp HHHHHHTTCCCCEESCSTTSTTCEEECCCTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCCcccCcCCCCCeEEEecCCCCCHHHHHHHHHHHHH
Confidence 9999999997542 1357899999999999999999999985
|
| >d1wyua1 c.67.1.7 (A:1-437) Glycine dehydrogenase (decarboxylating) subunit 1 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Glycine dehydrogenase subunits (GDC-P) domain: Glycine dehydrogenase (decarboxylating) subunit 1 species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=1.7e-58 Score=526.92 Aligned_cols=409 Identities=19% Similarity=0.268 Sum_probs=352.6
Q ss_pred CCHHHHHHHHHHHhCCCCCCCCHHhhhhhhhccCCCCccCCCCCCCCccccCCCCHHHHHHHHHHHhccccCcccccccc
Q 001989 515 TTLEDVDKLFIVFAGGKSVPFTAASLAEEVETAIPSGLTRESPYLTHPVFNKYHTEHELLRYIHLLQSKELSLCHSMIPL 594 (985)
Q Consensus 515 ~t~edId~li~aL~~~~~~~~~~~~l~~~~~~~ip~~~~~~~~~~~~p~~~~~~se~e~~~~l~~l~~~~~~~~~~~~~l 594 (985)
+|++|++.+++.|+.+ |++||++ +||+++|+ +++ .+| +++||.|++||+.+|+++|...+.+++++
T Consensus 6 ~s~~d~~~mL~~iG~~-----s~~dl~~----~IP~~~~~-~~~-~lp---~~~sE~e~~r~~~~ls~kN~~~~~~fig~ 71 (437)
T d1wyua1 6 HTEEEIREMLRRVGAA-----SLEDLFA----HLPKEILS-PPI-DLP---EPLPEWKVLEELRRLAAQNLPAHKAFLGG 71 (437)
T ss_dssp CCHHHHHHHHHHHTCS-----STGGGGT----TSCGGGSS-CCC-CCC---CCCCHHHHHHHHHHHHHTSCCCTTCCCCS
T ss_pred cCHHHHHHHHHHcCCC-----CHHHHHH----hccHHHhc-CCC-CCC---CCCCHHHHHHHHHHHHhCCCCcCccccCc
Confidence 7999999999999988 8999985 69999964 454 777 77999999999999999998888899999
Q ss_pred cccccCCCccccccccccccccc-cCCCCchhhhhhHHHHHHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHH
Q 001989 595 GSCTMKLNATTEMMPVTWPSFAN-IHPFAPADQAQGYQEMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHK 673 (985)
Q Consensus 595 G~~t~~~~~~~~~~~~~~~~f~~-~~p~~p~e~~~G~~~~~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~ 673 (985)
|+|+|++|+..+.+ +.+++|++ |||||| |++||.+|++.|+|+++++++|++.+++++++|++|+..++++++.+.
T Consensus 72 G~~~~~~p~~i~~~-~~~~~~~t~ytPyqp-E~sQG~Lq~l~e~q~~l~eltGmd~~n~s~~~ga~a~~~~~~~~~~~~- 148 (437)
T d1wyua1 72 GVRSHHVPPVVQAL-AARGEFLTAYTPYQP-EVSQGVLQATFEYQTMIAELAGLEIANASMYDGATALAEGVLLALRET- 148 (437)
T ss_dssp SCCCCCCCHHHHHH-HTSHHHHHCCSCCSG-GGCHHHHHHHHHHHHHHHHHHTSSEECSCBSSHHHHHHHHHHHHHHHH-
T ss_pred ccCCceeCHHHHHH-HhChhhhhhCCCcch-HHHHHHHHHHHHHHHHHHHhhCCCccccCchHHHHHHHHHHHHHHhhh-
Confidence 99999999988654 67788877 899999 999999999999999999999999999999999999988887777653
Q ss_pred hcCCCCCCEEEEcCCCCcc----cHHHHHHCCcEEEEEcCCCCCCCCHHHHHHHHHhcCCCEEEEEEEcCCCccccccCH
Q 001989 674 ARGDHHRNVCIIPVSAHGT----NPATAAMCGMKIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGI 749 (985)
Q Consensus 674 ~~g~~~~~~IIv~~~~Hg~----~~~~a~~~G~~vv~v~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~pn~~G~i~~di 749 (985)
++++++++...|+. ++.+++..|++++.+|.++++..+ ++ ++ +++++|++++||+.|+++ |+
T Consensus 149 -----~~~~~~v~~~~~p~~~~v~~t~a~~~g~~vv~v~~~~~~~~~-~~----~~---~~~Aavmi~~Pnt~G~~e-d~ 214 (437)
T d1wyua1 149 -----GRMGVLVSQGVHPEYRAVLRAYLEAVGAKLLTLPLEGGRTPL-PE----VG---EEVGAVVVQNPNFLGALE-DL 214 (437)
T ss_dssp -----TCCEEEEETTSCHHHHHHHHHHHHHTTCEEEEECCBTTBCCC-CC----CC---TTEEEEEEESSCTTSBCC-CH
T ss_pred -----cccccccccccChHHhhhhhhhcccceeeEEeeecccccchh-hh----hc---cceeEEEEcccccccccc-ch
Confidence 45678898887754 455678899999999986544333 21 33 899999999999999998 89
Q ss_pred HHHHHHHHHcCCEEEEEccccccccCCCCCCccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCC
Q 001989 750 DEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGG 829 (985)
Q Consensus 750 ~eI~~la~~~galliVD~a~~~~~~~l~~pg~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~ 829 (985)
++|++++|+.|+++++| ++.++++++.+|+++|+||++++ ||+|+.|+++|||++|++++++++.+++|++++|.+.|
T Consensus 215 ~~i~~~~h~~G~l~~~~-ad~~al~~l~~Pg~~GaDi~~g~-~q~fg~p~g~GGP~~G~~a~~~~l~r~lPgrivg~s~d 292 (437)
T d1wyua1 215 GPFAEAAHGAGALFVAV-ADPLSLGVLKPPGAYGADIAVGD-GQSLGLPMGFGGPHFGFLATKKAFVRQLPGRLVSETVD 292 (437)
T ss_dssp HHHHHHHHHTTCEEEEE-CCTTGGGTBCCHHHHTCSEEEEE-CTTTTCCCGGGCSCCEEEEECGGGGGGCCSCCEEEEEB
T ss_pred HHHHHHhhhccceEEee-echhhhhccccccccccceEeec-cceeccccCCCcCccccccccchhhccccccccccccc
Confidence 99999999999988776 56688999999999999999999 89999999999999999999999999999999986543
Q ss_pred C-C------------CC-CCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc--cCCee
Q 001989 830 I-P------------AP-EKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK--HYPIL 893 (985)
Q Consensus 830 ~-~------------~~-~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~--g~~l~ 893 (985)
. + ++ +|+++++|+|++ +++.+..+|+|+..+|++|++++++++..+++|++++|.+ ++.+.
T Consensus 293 ~~G~~~~~l~lqtreqhIrRekatsnict~---q~l~a~~a~~Y~~~lG~~GL~~ia~~a~~~A~yl~~~L~~~~g~~~~ 369 (437)
T d1wyua1 293 VEGRRGFILTLQAREQYIRRAKAKSNITTN---AQLTALMGAMYLAALGPEGLREVALKSVEMAHKLHALLLEVPGVRPF 369 (437)
T ss_dssp TTSCEEEEECCGGGSHHHHGGGSSCCCCSC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTCEEC
T ss_pred cCCcccceeecccccccccccccccchhhH---HHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHHHHHHhhhcCCeecc
Confidence 2 1 11 368899999975 6777888999999999999999999999999999999987 34433
Q ss_pred ecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCCCC--CCCEEEEeccCCCCHHHHHHHHccCChhHHH
Q 001989 894 FRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWP--VPGTLMIEPTESESKSWTGIVMLSSPSEKKL 971 (985)
Q Consensus 894 ~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~~p--~~~~lris~t~~~t~eeId~~~~~~~l~~~~ 971 (985)
+. .+++++|+++++ .++.+++++|.++||++++..+| ..+.++|++||.+|+||||+ |+++|++++
T Consensus 370 ~~---~~~f~ef~v~~~-------~~~~~i~k~L~d~G~~~~~~~~~~~~~~~lli~~TE~~tkeeiD~--~v~al~eil 437 (437)
T d1wyua1 370 TP---KPFFNEFALALP-------KDPEAVRRALAERGFHGATPVPREYGENLALFAATELHEEEDLLA--LREALKEVL 437 (437)
T ss_dssp SC---SSBCSEEEEECS-------SCHHHHHHHHHHTTCCCCEECCTTSCSSEEEEECCTTCCHHHHHH--HHHHHHHHC
T ss_pred CC---CCeeeEEEEECC-------CCHHHHHHHHHhCCCCCCcccccCCCCCeEEEecCCCCCHHHHHH--HHHHHHHhC
Confidence 22 468999999864 57899999999999999875444 46899999999999999999 888888764
|
| >d1wyub1 c.67.1.7 (B:2-472) Glycine dehydrogenase subunit 2 (P-protein) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Glycine dehydrogenase subunits (GDC-P) domain: Glycine dehydrogenase subunit 2 (P-protein) species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=7.9e-52 Score=477.85 Aligned_cols=409 Identities=39% Similarity=0.693 Sum_probs=343.7
Q ss_pred CHHhhhhhhhccCCCCccCCCCCCCCccccCCCCHHHHHHHHHHHhccccCcccccccccccccCCCccccccccccccc
Q 001989 536 TAASLAEEVETAIPSGLTRESPYLTHPVFNKYHTEHELLRYIHLLQSKELSLCHSMIPLGSCTMKLNATTEMMPVTWPSF 615 (985)
Q Consensus 536 ~~~~l~~~~~~~ip~~~~~~~~~~~~p~~~~~~se~e~~~~l~~l~~~~~~~~~~~~~lG~~t~~~~~~~~~~~~~~~~f 615 (985)
|+++|++ +||+++|+++++ .+| + +||.|++|+|++|+++|.+.+.+++++|+|++++++......++| |
T Consensus 21 si~el~~----~IP~~~~~~~~l-~LP---~-~sE~El~r~~~~la~kN~~~~~~~~~lG~~~~hy~P~v~~~~~~~--~ 89 (471)
T d1wyub1 21 AVPKAED----LIPKEHLREVPP-RLP---E-VDELTLVRHYTGLSRRQVGVDTTFYPLGSCTMKYNPKLHEEAARL--F 89 (471)
T ss_dssp SCCCHHH----HSCGGGBCSSCC-CCC---C-CCHHHHHHHHHHHHTTCCCTTTSCCCBTTTCCCCCCHHHHHHHHT--T
T ss_pred cchhhhh----hCCHHHHcCCCC-CCC---C-CCHHHHHHHHHHHHhCCCCccccccCCccccCccCcchhhhHHHH--H
Confidence 5777764 799999999986 777 4 899999999999999999888889999999999988766555443 5
Q ss_pred cccCCCCchhhhhhHHHHHHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCC-CEEEEcCCCCcccH
Q 001989 616 ANIHPFAPADQAQGYQEMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHR-NVCIIPVSAHGTNP 694 (985)
Q Consensus 616 ~~~~p~~p~e~~~G~~~~~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~-~~IIv~~~~Hg~~~ 694 (985)
..||||||+|++||++|+++|+|+++++|+|||.++..++.|++|...++++++.+...++.... ..++++...|....
T Consensus 90 TaYTPYQPaEiSQG~LQalfEfQtmi~eLTGMdvaNaS~yDGatA~aeA~~ma~r~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (471)
T d1wyub1 90 ADLHPYQDPRTAQGALRLMWELGEYLKALTGMDAITLEPAAGAHGELTGILIIRAYHEDRGEGRTRRVVLVPDSAHGSNP 169 (471)
T ss_dssp SSCCTTSCGGGCHHHHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHHHHHHHHHHHHTTCTTTCCEEEEETTSCTHHH
T ss_pred hccCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCccccccchHHHHHHHHHHHHHHHhhhcccccccccccCCccccccee
Confidence 55999997799999999999999999999999999998999988774455555556555443222 33445555555566
Q ss_pred HHHHHCCcEEEEEcCCCCCCCCHHHHHHHHHhcCCCEEEEEEEcCCCccccccCHHHHHHHHHHcCCEEEEEcccccccc
Q 001989 695 ATAAMCGMKIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQV 774 (985)
Q Consensus 695 ~~a~~~G~~vv~v~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~pn~~G~i~~di~eI~~la~~~galliVD~a~~~~~~ 774 (985)
.+....+.+++.++.+..+..|.+.++.+++ +++.++++++||++|.++.+++++++++|+.|+.+++|+++...+.
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~a~v~v~~p~~~g~~e~~~~~~~~~~h~~g~~~~~~~~~~~~~~ 246 (471)
T d1wyub1 170 ATASMAGYQVREIPSGPEGEVDLEALKRELG---PHVAALMLTNPNTLGLFERRILEISRLCKEAGVQLYYDGANLNAIM 246 (471)
T ss_dssp HHHHHTTCEEEEECBCTTSSBCHHHHHHHCS---TTEEEEEECSSCTTSCCCTTHHHHHHHHHHHTCEEEEEGGGGGGTT
T ss_pred eeeecccceeecccccccccccchhhhhhhh---ccccceeeccCCCcccccchhhhhHHHHHhccccccccccchhhhh
Confidence 6677888999999988889999999998887 8999999999999999986799999999999999999998877777
Q ss_pred CCCCCCccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCC-------CCC-CCCCCCCCCCCcc
Q 001989 775 GLTSPGYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGI-------PAP-EKSQPLGTIAAAP 846 (985)
Q Consensus 775 ~l~~pg~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~-------~~~-~~~~~~~~i~s~~ 846 (985)
++..|+.+|+|+++.+.||+|+.|++||||+.|++++++++.+++||++++.+.+. .++ +|+ ++|++
T Consensus 247 ~l~~p~~~g~div~vg~~q~~G~P~~~GGP~~G~~a~~~~~~R~~PGRiV~~~~~~~~~~~~REqhIrRe----~actn- 321 (471)
T d1wyub1 247 GWARPGDMGFDVVHLNLHKTFTVPHGGGGPGSGPVGVKAHLAPYLPVPLVERGEEGFYLDFDRPKSIGRV----RSFYG- 321 (471)
T ss_dssp TTCCHHHHTCSEEECCTTTTTCCCCTTSCCCCCCEEECGGGGGGCCSCEEEECSSCEEEECCCTTCCCCS----SSTTS-
T ss_pred hccccCcccccccccccccccccccccccccccceeehhhhhccCCCceecCCCccccccCCCcccccch----hhhhh-
Confidence 77889999999999999999999999999999999999999999999998764332 111 233 33554
Q ss_pred hhhhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHH
Q 001989 847 WGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAK 925 (985)
Q Consensus 847 ~g~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~ 925 (985)
+++.+.+|+.||..+|++|++++++++..+++|++++|+. |+++.+. ++++++|+++++ .+++..++++
T Consensus 322 --qaL~al~A~vYlsllG~~GL~elA~~~~~~A~Yla~~L~~~G~~~~~~---~~ff~EFvv~~~-----~~~~~~~i~k 391 (471)
T d1wyub1 322 --NFLALVRAWAYIRTLGLEGLKKAAALAVLNARYLKELLKEKGYRVPYD---GPSMHEFVAQPP-----EGFRALDLAK 391 (471)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCBCSSC---SSCCSCEEEBCS-----TTCCHHHHHH
T ss_pred --hHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHhhcCceeccC---cceeeEEeecCC-----CCCCHHHHHH
Confidence 6677888899999999999999999999999999999976 7776543 478999999876 4678899999
Q ss_pred HHHHCCCccCCCCCC--CCCEEEEeccCCCCHHHHHHHHccCChhHHHHhhc
Q 001989 926 RLMDYGFHGPTMSWP--VPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRLK 975 (985)
Q Consensus 926 ~L~~~Gi~~~~~~~p--~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~~ 975 (985)
+|.++|++.+...|| ..+.++||+||.+|+||||+ |+++|++++++.+
T Consensus 392 ~L~~~G~~~~~~~~p~~~~~~llv~vTE~~tkedID~--lv~aL~~i~~e~~ 441 (471)
T d1wyub1 392 GLLELGFHPPTVYFPLIVKEALMVEPTETEAKETLEA--FAEAMGALLKKPK 441 (471)
T ss_dssp HHHHTTCCCCEESCSTTSTTCEEECCCTTSCHHHHHH--HHHHHHHHHTSCH
T ss_pred HHHHcCCCCCcccCcCCCCCeEEEecCCCCCHHHHHH--HHHHHHHHHHhhH
Confidence 999999998877777 46899999999999999999 8899999988654
|
| >d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS) {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Methanococcus maripaludis [TaxId: 39152]
Probab=100.00 E-value=1.8e-33 Score=325.77 Aligned_cols=378 Identities=11% Similarity=0.067 Sum_probs=284.1
Q ss_pred ccccccCCCCCHHHHHHHHHHhCCCCHHHhhhhcCCCccccCCCCCCCCCCCCCHHHHHHHHHHHhcCCC-ccceecCCC
Q 001989 96 DTFARRHNSATPEDQAKMSELVGLDNLDSLIDATVPKSIRIDSMKFSKFDEGLTESQMIEHMQKLASMNK-VYKSFIGMG 174 (985)
Q Consensus 96 ~~~~~~~~~~~~~~~~~ml~~~g~~~~~~l~~~~ip~~~~~~~~~lp~~~~~~se~e~~~~~~~l~~~n~-~~~~~lG~g 174 (985)
|-.+.-.||.+.+++.+|+...|++++|+||+. .+|| .+++||.|+.+++++++.+|. .+.++.|.|
T Consensus 3 ~~~~~~~ip~~~~~~~~~~~~~~~~~~~~l~~~----------~~lP--~~g~~~~~i~~~l~~l~~~~~~~~~~~~~~g 70 (434)
T d2z67a1 3 DFNIEGLIPKNMEKRGELVLNEYLKEIEDVFNH----------RKIP--ENGIDDEKIKLFLKFLSMMDTDKDPKSVRIG 70 (434)
T ss_dssp CCCCCSSSCHHHHHHHHHHHHHHTHHHHHHHHH----------CSCC--SSCCCHHHHHHHHHHHHTTBGGGCTTCEECS
T ss_pred cchhhccCCccHHHHHHHHHHHHHHHHHHHHhc----------ccCC--CCCCCHHHHHHHHHHHHhcCccccccccccc
Confidence 345678899999999999999999999999975 2466 468999999999999999885 477788999
Q ss_pred CCCCCCc-HHHHHH---HHhCCccccccCCChhhHhhhHHHHHHHHH--HHHHHhcCCCCcceeeccchHHHHHHHHHHh
Q 001989 175 YYNTHVP-PVILRN---IMENPAWYTQYTPYQAEIAQGRLESLLNFQ--TMIADLTGLPMSNASLLDEGTAAAEAMAMCN 248 (985)
Q Consensus 175 ~y~~~~p-~~v~~~---i~~~~~~~t~~~pyq~e~sqg~l~~i~e~q--~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~ 248 (985)
.|.|.++ +.+.+. .....++.+.|+||||+++|++++..+++| .++++++|++.++++++++++++.+++++|+
T Consensus 71 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~t~~~~~~~l~a~ 150 (434)
T d2z67a1 71 EREARTYSKIHEELSSGFCHGIGRSGNLVDPQPKASGASIMYALTNKILESFFKQLGLNVHAIATPISTGMSISLCLSAA 150 (434)
T ss_dssp SCCCCCSCHHHHHHTTTCTTCBSBTTBTTSCCTTBHHHHHHHHHHHHHHHHHHHHTTCCCEEEEESSCHHHHHHHHHHHH
T ss_pred ceecccchhHHhhcccccccccccccchhhhhhhhhhhHHHHHHHHHHHHHHHHhcCCCcceeecCcHHHHHHHHHHHHH
Confidence 8877654 444322 122345677889999999999988877766 7799999999988888888888888888887
Q ss_pred hhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEe-----------Cchhhhc-cC-----CCEeEEEEEcCCC-Ce
Q 001989 249 NIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVS-----------DLKDIDY-KS-----GDVCGVLVQYPGT-EG 310 (985)
Q Consensus 249 ~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v-----------~~~~l~~-l~-----~~t~~V~v~~pn~-~G 310 (985)
+.. .++++||+++..|+++.+.+.. .|++.+.+ |+++|++ ++ +++.+|++++||+ +|
T Consensus 151 r~~-~~~~~vi~s~~~H~s~~k~~~~----~g~~~~~v~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~v~~~~~~~~~g 225 (434)
T d2z67a1 151 RKK-YGSNVVIYPYASHKSPIKAVSF----VGMNMRLVETVLDGDRVYVPVEDIENAIKKEIELGNRPCVLSTLTFFPPR 225 (434)
T ss_dssp HHH-HCCCEEEEECCCCHHHHHHHHH----TTCEEEEECCEEETTEEECCHHHHHHHHHHHHHTTCCEEEEEESSCCTTB
T ss_pred HHh-hcCceEEEeccCCHHHHHHHHH----hCCcceEEEeecCCCccCCCHHHHHHHHHhhhhcCCceEEEeccCcCCCc
Confidence 542 2679999999999999999864 35555444 3456765 43 4788899999865 89
Q ss_pred eeccHHHHHHHHHhCCcEEEEEecCcccc------CCCCCCcccceEEEecC-ccccccCCCCCCcEEEEEEch-hhHhc
Q 001989 311 EVLDYGDFIKNAHANGVKVVMATDLLALT------ILKPPGELGADIVVGSA-QRFGVPMGYGGPHAAFLATSQ-EYKRM 382 (985)
Q Consensus 311 ~v~di~~I~~~a~~~galliV~a~~~~lg------~l~~~~~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~-~~~~~ 382 (985)
.++|+++|+++||++|++++|++ .++.+ .+..++++|+|++++++ |.|++|. |.|++++++ .+.++
T Consensus 226 ~~~~l~~i~~~~~~~~~~l~vD~-a~g~~~~~~~~~~~~~~~~~~D~~~~s~hK~l~~~~-----g~~~~~~~~~~~~~~ 299 (434)
T d2z67a1 226 NSDDIVEIAKICENYDIPHIING-AYAIQNNYYLEKLKKAFKYRVDAVVSSSDKNLLTPI-----GGGLVYSTDAEFIKE 299 (434)
T ss_dssp CCCCHHHHHHHHHHHTCCEEEEC-TTTTTCHHHHHHHHHHHTSCCSEEEEEHHHHHCCCS-----SCEEEEESCHHHHHH
T ss_pred cccCHHHHHHHHHHhCCeEEEec-cchhhhhhccccccccccCCcceEEEcCccccccCC-----CccccccCcHHHHHH
Confidence 99999999999999999999954 23322 12345789999999999 6687653 346666654 33333
Q ss_pred CCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHh
Q 001989 383 MPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLK 462 (985)
Q Consensus 383 lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~ 462 (985)
+. .+.+.++ ....+..+..++.+++.+|++++.++..++++|++++|+
T Consensus 300 ~~-------------------------------~~~~~~~-~~~~~~~~~a~l~~~~~~g~~~~~~~~~~~a~~l~~~L~ 347 (434)
T d2z67a1 300 IS-------------------------------LSYPGRA-SATPVVNTLVSLLSMGSKNYLELVKNQKNSKKLLDELLN 347 (434)
T ss_dssp HH-------------------------------TTSCSCB-CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HH-------------------------------hhccccc-ccchHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHH
Confidence 21 1111111 122223333345788899999999999999999999998
Q ss_pred cC----CCeEEcCCCCcceEEEecCC-HHHHHHHHHHcCceeee---------------ecCCeEEEEeccCCCHHHHHH
Q 001989 463 KL----GTVEVQGLPFFDTVKVKCAD-AHAIASAAYKIEMNLRV---------------VDSNTVTASFDETTTLEDVDK 522 (985)
Q Consensus 463 ~~----g~~~~~~~~~~~~~~~~~~~-~~~v~~~L~~~GI~~~~---------------~~~~~lris~t~~~t~edId~ 522 (985)
++ | +.+++.+.+..+.+.... +.++...|.++||.... ...+.+|+++++.+|+||||+
T Consensus 348 ~l~~~~g-~~ll~~~~~~~~~~~~~~~~~~l~~~L~~~gI~g~~v~~~l~~~g~~~~~~~~~~~l~~~~s~~~T~edID~ 426 (434)
T d2z67a1 348 DLSKKTG-GKFLDVESPIASCISVNSDPVEIAAKLYNLRVTGPRGIKKTDHFGNCYLGTYTHDYIVMNAAIGVRTEDIVN 426 (434)
T ss_dssp HHHHHSS-CCBCCCCCSSEEEEECSSCHHHHHHHHHHTTEESCEEECTTCHHHHTCSSCCSCCEEEEECCTTCCHHHHHH
T ss_pred HhhhhcC-ceecCCCCCceeeeecCCCHHHHHHHHHHcCCeeeehhhhccccCeeeecccCCCeEEEecCCCCCHHHHHH
Confidence 75 4 666665556666666655 88999999999985321 124779999999999999999
Q ss_pred HHHHHhC
Q 001989 523 LFIVFAG 529 (985)
Q Consensus 523 li~aL~~ 529 (985)
|+++|++
T Consensus 427 ~i~~L~k 433 (434)
T d2z67a1 427 SVSKLEK 433 (434)
T ss_dssp HHHHHHT
T ss_pred HHHHHhc
Confidence 9999974
|
| >d1elua_ c.67.1.3 (A:) Cystine C-S lyase C-des {Synechocystis sp. [TaxId: 1143]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystine C-S lyase C-des species: Synechocystis sp. [TaxId: 1143]
Probab=99.97 E-value=2.8e-29 Score=284.92 Aligned_cols=348 Identities=18% Similarity=0.186 Sum_probs=259.1
Q ss_pred CCCccceecCCCCCCCCCcHHHHHHHHhCCccccccCCChhhHhhhHHHHHHHHHHHHHHhcCCCCcceeeccchHHHHH
Q 001989 163 MNKVYKSFIGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAE 242 (985)
Q Consensus 163 ~n~~~~~~lG~g~y~~~~p~~v~~~i~~~~~~~t~~~pyq~e~sqg~l~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~e 242 (985)
+|..|.++-|.|. .|..+.+++...-..+....+++...++...+.+.++|+.+|+++|+++.++.+++|+|.++.
T Consensus 6 ~~~~yld~~~~~~----~p~~v~ea~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~i~~~~g~t~a~~ 81 (381)
T d1elua_ 6 ANKTYFNFGGQGI----LPTVALEAITAMYGYLQENGPFSIAANQHIQQLIAQLRQALAETFNVDPNTITITDNVTTGCD 81 (381)
T ss_dssp TTSEECCTTTCCC----CCHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHHHHHHTTSCGGGEEEESSHHHHHH
T ss_pred CCCEEeeCCcccC----CCHHHHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHHHHHhCCCcccEEEECChHHHhh
Confidence 4566777667674 666554444432111233467777778888899999999999999999999999999997665
Q ss_pred HHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCch----------hhhc-cCCCEeEEEEEcC-CCCe
Q 001989 243 AMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDLK----------DIDY-KSGDVCGVLVQYP-GTEG 310 (985)
Q Consensus 243 a~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~~----------~l~~-l~~~t~~V~v~~p-n~~G 310 (985)
.++.++.. ++|++|++++.+|+++..+|+.+++..|++++.++.+ .+++ ++++|++|+++++ |.+|
T Consensus 82 ~~~~~l~~--~~g~~i~~~~~~~~s~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~l~~~i~~~t~~v~i~~~~n~tG 159 (381)
T d1elua_ 82 IVLWGLDW--HQGDEILLTDCEHPGIIAIVQAIAARFGITYRFFPVAATLNQGDAAAVLANHLGPKTRLVILSHLLWNTG 159 (381)
T ss_dssp HHHHHSCC--CTTCEEEEETTCCHHHHHHHHHHHHHHCCEEEEECCGGGSSSSCHHHHHHTTCCTTEEEEEEESBCTTTC
T ss_pred hcchhhhh--cCCceEEEeccccceeeeccccccccccccccccccccccccchHHHHHHhhhccccccccccccccccc
Confidence 55444433 4899999999999999999998888889999998752 2445 7899999999987 6799
Q ss_pred eeccHHHHHHHHHhC----CcEEEEEecCccccCC-CCCCcccceEEEecC-ccccccCCCCCCcEEEEEEchhhHhcCC
Q 001989 311 EVLDYGDFIKNAHAN----GVKVVMATDLLALTIL-KPPGELGADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMP 384 (985)
Q Consensus 311 ~v~di~~I~~~a~~~----galliV~a~~~~lg~l-~~~~~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp 384 (985)
.+.|+++|.++||++ |++++||+ .+++|.. ....++|+|++++++ |+|++| +|+|+++++++..+.+.
T Consensus 160 ~~~~~~~I~~l~~~~~~~~~~~~~vD~-~~~~g~~~~~~~~~~~D~~~~s~~K~~~~p-----~G~g~l~~~~~~~~~~~ 233 (381)
T d1elua_ 160 QVLPLAEIMAVCRRHQGNYPVRVLVDG-AQSAGSLPLDFSRLEVDYYAFTGHKWFAGP-----AGVGGLYIHGDCLGEIN 233 (381)
T ss_dssp CBCCHHHHHHHHHHCCSSSCCEEEEEC-TTTBTTBCCCTTTSCCSEEEEESSSTTCCC-----TTCEEEEECTTTGGGCC
T ss_pred ccchhhHHHHHHhhccccccccccccc-cccccccccccccccccccccccccccccc-----chhhHHHhhHHHHHhcC
Confidence 999999999999984 68898853 4566644 345788999999999 666544 46789999999998888
Q ss_pred CceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcch-HHHHHHHHHHHHHHHHHHHhc
Q 001989 385 GRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEG-LKTIAQRVHGLAGTFALGLKK 463 (985)
Q Consensus 385 ~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~G-l~~i~~~~~~~a~~l~~~L~~ 463 (985)
+.+.||.....+.......+ .....+++.||.++ ...+++.+++ ..+...| .+.+.++..++++++.++|++
T Consensus 234 p~~~~~~~~~~~~~~~~~~~--~~~~~~~~~gt~~~---~~~~~~~~a~--~~~~~~g~~~~~~~~~~~~~~~l~~~L~~ 306 (381)
T d1elua_ 234 PTYVGWRSITYGAKGEPTGW--AEGGKRFEVATSAY---PQYAGLLAAL--QLHQRQGTAEERYQAICQRSEFLWRGLNQ 306 (381)
T ss_dssp CCSCCTTTEEECTTSCEEEE--CSGGGGGCCSCCCH---HHHHHHHHHH--HHHHHHCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccc--cccccccccccccc---hhhhhhhhhh--hhHHHhcccccchhhhhhHHHHHHHHHhc
Confidence 77777521100111111111 22344567788887 4555666665 3333344 356678889999999999999
Q ss_pred CCCeEEcCC--CCcceEEEecCC---HHHHHHHHHHcCceeeee-cCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 464 LGTVEVQGL--PFFDTVKVKCAD---AHAIASAAYKIEMNLRVV-DSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 464 ~g~~~~~~~--~~~~~~~~~~~~---~~~v~~~L~~~GI~~~~~-~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
+++++++.. +....++|.+++ .+++.+.|.++||.++.. .++.+|+|++.+||+||||+|+++|++
T Consensus 307 ~~~~~~~~~~~~~~~~vsf~~~~~~~~~~i~~~L~~~gi~v~~~~~~~~lRis~~~~nt~edid~ll~~l~e 378 (381)
T d1elua_ 307 LPHVHCLATSAPQAGLVSFTVDSPLGHRAIVQKLEEQRIYLRTIADPDCIRACCHYITDEEEINHLLARLAD 378 (381)
T ss_dssp STTEEESCSSCCSSSEEEEEECSSSCHHHHHHHHHHTTEECEEETTTTEEEEECCTTCCHHHHHHHHHHHTT
T ss_pred CCCeEecCCCCccccEEEEEcCCCCCHHHHHHHHHhCCcEEEecCCCCEEEEecCCCCCHHHHHHHHHHHHh
Confidence 965999843 445566676554 788999999999998765 468999999999999999999999985
|
| >d1jf9a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: NifS-like protein/selenocysteine lyase species: Escherichia coli [TaxId: 562]
Probab=99.97 E-value=7.7e-29 Score=283.94 Aligned_cols=358 Identities=16% Similarity=0.127 Sum_probs=264.2
Q ss_pred HHHHHHHHHHHhcCC--C--ccceecCCCCCCCCCcHHHHHHHHhCCccccc-c-CCChh--hHhhhHHHHHHHHHHHHH
Q 001989 150 ESQMIEHMQKLASMN--K--VYKSFIGMGYYNTHVPPVILRNIMENPAWYTQ-Y-TPYQA--EIAQGRLESLLNFQTMIA 221 (985)
Q Consensus 150 e~e~~~~~~~l~~~n--~--~~~~~lG~g~y~~~~p~~v~~~i~~~~~~~t~-~-~pyq~--e~sqg~l~~i~e~q~~ia 221 (985)
=.+++++|..|.... + .|.+.-|.| .+|..+.+.+.+ ++.. | +|... ..++.+.+.+.++++.+|
T Consensus 4 ~~~vR~~FP~l~~~~~~~~~iYld~a~~~----~~p~~v~~~~~~---~~~~~~~n~~~~~~~~~~~~~~~~e~~R~~ia 76 (405)
T d1jf9a_ 4 VDKVRADFPVLSREVNGLPLAYLDSAASA----QKPSQVIDAEAE---FYRHGYAAVHRGIHTLSAQATEKMENVRKRAS 76 (405)
T ss_dssp HHHHHHTCGGGGCEETTEECEECCTTTCC----CCCHHHHHHHHH---HHHHTCCCCSSCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhChhcccCcCCCCeEEEeCcccc----CCCHHHHHHHHH---HHHhccCCCccchhHHHHHHHHHHHHHHHHHH
Confidence 356777777775431 2 344433443 467777555443 1211 1 34321 245566688999999999
Q ss_pred HhcCCCC-cceeeccchHHHHHHHHHHhh-hhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc--------hhh
Q 001989 222 DLTGLPM-SNASLLDEGTAAAEAMAMCNN-IQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL--------KDI 291 (985)
Q Consensus 222 ~L~g~~~-~~~sl~~~~ta~~ea~~~a~~-~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~--------~~l 291 (985)
+++|++. .++.++.++|.++..++.+.. ....+|++||++..+||++..+|+.+++..|++++++++ +++
T Consensus 77 ~~l~~~~~~~i~~~~~~T~~~~~~~~~~~~~~~~~g~~il~~~~e~~s~~~~~~~~a~~~g~~v~~~~~~~~g~~~~~~~ 156 (405)
T d1jf9a_ 77 LFINARSAEELVFVRGTTEGINLVANSWGNSNVRAGDNIIISQMEHHANIVPWQMLCARVGAELRVIPLNPDGTLQLETL 156 (405)
T ss_dssp HHTTCSCGGGEEEESSHHHHHHHHHHHHHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHHTCEEEEECBCTTSCBCGGGH
T ss_pred HHcCCCCcccccccCcHHHHHHHHHhcccccccCCCCEEEEEeCcccchHHHHHHHHHHcCcEEEEECCCCCCcCCHHHH
Confidence 9999754 688899999977665554422 223489999999999999999999998888999999875 345
Q ss_pred hc-cCCCEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCC-CCCcccceEEEecCccccccCCCCCC
Q 001989 292 DY-KSGDVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILK-PPGELGADIVVGSAQRFGVPMGYGGP 368 (985)
Q Consensus 292 ~~-l~~~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~-~~~~~GaDi~v~s~k~lg~P~~~GGP 368 (985)
++ ++++|++|++++. |.+|.+.|+++|+++||++|++++||+ .++.|.+. +..++|+|+++++++||++| +
T Consensus 157 ~~~i~~~t~lv~~~~v~~~tG~~~pi~~i~~~~~~~g~~~~vD~-~q~~g~~~id~~~~~~D~~~~s~hK~~Gp-----~ 230 (405)
T d1jf9a_ 157 PTLFDEKTRLLAITHVSNVLGTENPLAEMITLAHQHGAKVLVDG-AQAVMHHPVDVQALDCDFYVFSGHKLYGP-----T 230 (405)
T ss_dssp HHHCCTTEEEEEEESBCTTTCCBCCHHHHHHHHHHTTCEEEEEC-TTTTTTSCCCHHHHTCSEEEEEGGGTTSC-----S
T ss_pred HHhccCCcEEEEEecCCCcccccCchHHhhhHHHHcCCeeeccc-ceeccccccchhhcCCceeeccccccccC-----C
Confidence 55 7899999999985 789999999999999999999999954 45677553 45689999999999555334 5
Q ss_pred cEEEEEEchhhHhcCCCceeeeee--cCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcchHHHH
Q 001989 369 HAAFLATSQEYKRMMPGRIVGVSI--DSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTI 446 (985)
Q Consensus 369 ~~G~l~~~~~~~~~lp~~~vG~t~--d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i 446 (985)
|+|++++++++++.+++...++.. .......+.+ .+...|++.||.|+ .++.++.+++ .++...|++.+
T Consensus 231 G~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~r~e~GT~~~---~~~~~l~~al--~~~~~~g~~~i 301 (405)
T d1jf9a_ 231 GIGILYVKEALLQEMPPWEGGGSMIATVSLSEGTTW----TKAPWRFEAGTPNT---GGIIGLGAAL--EYVSALGLNNI 301 (405)
T ss_dssp SCEEEEECHHHHTTCCCSSCSSSSEEECCTTTCCEE----CCTTGGGCCSSCCH---HHHHHHHHHH--HHHHHHCHHHH
T ss_pred CceeeeechhhhcccCcccccccccCcccccccccc----ccchhhhcCCCCcH---HHHHHHHHHH--HHHHHhChHHH
Confidence 689999999999988877666421 1111111211 23455678899998 5677777776 55556689999
Q ss_pred HHHHHHHHHHHHHHHhcCCCeEEcCC-CCcceEEEecCC--HHHHHHHHHHcCceeeee------------cCCeEEEEe
Q 001989 447 AQRVHGLAGTFALGLKKLGTVEVQGL-PFFDTVKVKCAD--AHAIASAAYKIEMNLRVV------------DSNTVTASF 511 (985)
Q Consensus 447 ~~~~~~~a~~l~~~L~~~g~~~~~~~-~~~~~~~~~~~~--~~~v~~~L~~~GI~~~~~------------~~~~lris~ 511 (985)
.++...+++++.+.+++++.+.+.++ .....++|.+++ +.++.+.|.++||.++.- .++.+|+|+
T Consensus 302 ~~~~~~L~~~~~~~l~~~~~~~~~~~~~r~~ivsf~~~~~~~~~~~~~L~~~gI~v~~G~~c~~~~~~~~~~~g~iRiS~ 381 (405)
T d1jf9a_ 302 AEYEQNLMHYALSQLESVPDLTLYGPQNRLGVIAFNLGKHHAYDVGSFLDNYGIAVRTGHHCAMPLMAYYNVPAMCRASL 381 (405)
T ss_dssp HHHHHHHHHHHHHHHTTSTTEEEESCTTCCSEEEEEETTCCHHHHHHHHHHTTEECEEECTTCHHHHHHTTCSCEEEEEC
T ss_pred HHHHHHHHHHHHhhhhcCCcccccCCcCcCcEEEEEcCCCCHHHHHHHHHHCCcEEEccchhhhhHHHhcCCCCEEEEEC
Confidence 99999999999999999874655543 345577788776 889999999999987521 257899999
Q ss_pred ccCCCHHHHHHHHHHHhC
Q 001989 512 DETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 512 t~~~t~edId~li~aL~~ 529 (985)
+.+||++|||+|+++|++
T Consensus 382 ~~ynt~eDid~l~~~l~~ 399 (405)
T d1jf9a_ 382 AMYNTHEEVDRLVTGLQR 399 (405)
T ss_dssp CTTCCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 999999999999999973
|
| >d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS) {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Methanococcus maripaludis [TaxId: 39152]
Probab=99.96 E-value=1.2e-28 Score=284.85 Aligned_cols=361 Identities=16% Similarity=0.111 Sum_probs=252.5
Q ss_pred CCccccCCCCHHHHHHHHHHHhccccCcccccccccccccCCCccccccc----cccccc-cccCCCCchhhhhhHH--H
Q 001989 560 THPVFNKYHTEHELLRYIHLLQSKELSLCHSMIPLGSCTMKLNATTEMMP----VTWPSF-ANIHPFAPADQAQGYQ--E 632 (985)
Q Consensus 560 ~~p~~~~~~se~e~~~~l~~l~~~~~~~~~~~~~lG~~t~~~~~~~~~~~----~~~~~f-~~~~p~~p~e~~~G~~--~ 632 (985)
.+| +.|+||.|+++++++++..|.....+.+..|.++..+........ .....+ ..++|++| +++++.. +
T Consensus 37 ~lP--~~g~~~~~i~~~l~~l~~~~~~~~~~~~~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~~~~ 113 (434)
T d2z67a1 37 KIP--ENGIDDEKIKLFLKFLSMMDTDKDPKSVRIGEREARTYSKIHEELSSGFCHGIGRSGNLVDPQP-KASGASIMYA 113 (434)
T ss_dssp SCC--SSCCCHHHHHHHHHHHHTTBGGGCTTCEECSSCCCCCSCHHHHHHTTTCTTCBSBTTBTTSCCT-TBHHHHHHHH
T ss_pred cCC--CCCCCHHHHHHHHHHHHhcCcccccccccccceecccchhHHhhcccccccccccccchhhhhh-hhhhhHHHHH
Confidence 356 468999999999999999985533444555655444443211111 111122 23778888 7777754 4
Q ss_pred HHHHHHHHHHHHhCCCccc-eecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcC--
Q 001989 633 MFNNLGEWLCTITGFDSFS-LQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGT-- 709 (985)
Q Consensus 633 ~~~e~~~~la~l~G~~~~~-~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~-- 709 (985)
+..++..++++++|++... +.+++|+.++++++++.|.. .++++||++...|.++.+++...|++.+.|++
T Consensus 114 ~~~~~~~~~~~~~g~~~~~~~~~~~t~~~~~~~l~a~r~~------~~~~~vi~s~~~H~s~~k~~~~~g~~~~~v~~~~ 187 (434)
T d2z67a1 114 LTNKILESFFKQLGLNVHAIATPISTGMSISLCLSAARKK------YGSNVVIYPYASHKSPIKAVSFVGMNMRLVETVL 187 (434)
T ss_dssp HHHHHHHHHHHHTTCCCEEEEESSCHHHHHHHHHHHHHHH------HCCCEEEEECCCCHHHHHHHHHTTCEEEEECCEE
T ss_pred HHHHHHHHHHHhcCCCcceeecCcHHHHHHHHHHHHHHHh------hcCceEEEeccCCHHHHHHHHHhCCcceEEEeec
Confidence 4555668899999998754 44455555666777776643 25688999999999988889999999888864
Q ss_pred -CCCCCCCHHHHHHHHHhc--CCCEEEEEEEcCCC-ccccccCHHHHHHHHHHcCCEEEEEcccccccc----CCCCCCc
Q 001989 710 -DAKGNINIEELRKAAEAN--RDNLSTLMVTYPST-HGVYEEGIDEICKIIHDNGGQVYMDGANMNAQV----GLTSPGY 781 (985)
Q Consensus 710 -d~~g~iD~e~L~~~i~~~--~~~t~~Vvv~~pn~-~G~i~~di~eI~~la~~~galliVD~a~~~~~~----~l~~pg~ 781 (985)
+.++.+|+++|+++|+++ .+++.+|++++|++ +|.++ |+++|+++||++|+++|||+|+..... ....++.
T Consensus 188 ~~~~~~~d~~~l~~~i~~~~~~~~~~~v~~~~~~~~~g~~~-~l~~i~~~~~~~~~~l~vD~a~g~~~~~~~~~~~~~~~ 266 (434)
T d2z67a1 188 DGDRVYVPVEDIENAIKKEIELGNRPCVLSTLTFFPPRNSD-DIVEIAKICENYDIPHIINGAYAIQNNYYLEKLKKAFK 266 (434)
T ss_dssp ETTEEECCHHHHHHHHHHHHHTTCCEEEEEESSCCTTBCCC-CHHHHHHHHHHHTCCEEEECTTTTTCHHHHHHHHHHHT
T ss_pred CCCccCCCHHHHHHHHHhhhhcCCceEEEeccCcCCCcccc-CHHHHHHHHHHhCCeEEEeccchhhhhhcccccccccc
Confidence 345789999999999853 24788999999975 89998 899999999999999999999842221 1123567
Q ss_pred cCCcEEEeCCcccccccCCCCCCceEEEEEccc-ccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHH
Q 001989 782 IGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKH-LAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYI 860 (985)
Q Consensus 782 ~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~-l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l 860 (985)
+++|++++++||+|+.| +|.|+++++++ +.+.+.... +.++ .......+|+++
T Consensus 267 ~~~D~~~~s~hK~l~~~-----~g~~~~~~~~~~~~~~~~~~~-----------------~~~~----~~~~~~~~~a~l 320 (434)
T d2z67a1 267 YRVDAVVSSSDKNLLTP-----IGGGLVYSTDAEFIKEISLSY-----------------PGRA----SATPVVNTLVSL 320 (434)
T ss_dssp SCCSEEEEEHHHHHCCC-----SSCEEEEESCHHHHHHHHTTS-----------------CSCB----CSHHHHHHHHHH
T ss_pred CCcceEEEcCccccccC-----CCccccccCcHHHHHHHHhhc-----------------cccc----ccchHHHHHHHH
Confidence 89999999999999643 35567776643 333221110 0011 112234568888
Q ss_pred HHhcHHHHHHHHHHHHHHHHHHHHHhhc-----cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccC
Q 001989 861 AMMGSKGLTEASKIAILNANYMAKRLEK-----HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGP 935 (985)
Q Consensus 861 ~~lg~eGl~~~~~~~~~~a~~l~~~L~~-----g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~ 935 (985)
..++.+|+.+..++..++++|++++|++ ++.+. .. +....+.+.. +.+..++...|.++||.+.
T Consensus 321 ~~~~~~g~~~~~~~~~~~a~~l~~~L~~l~~~~g~~ll-~~---~~~~~~~~~~-------~~~~~~l~~~L~~~gI~g~ 389 (434)
T d2z67a1 321 LSMGSKNYLELVKNQKNSKKLLDELLNDLSKKTGGKFL-DV---ESPIASCISV-------NSDPVEIAAKLYNLRVTGP 389 (434)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCBC-CC---CCSSEEEEEC-------SSCHHHHHHHHHHTTEESC
T ss_pred HHHHHhcchhHHHHHHHHHHHHHHHHHHhhhhcCceec-CC---CCCceeeeec-------CCCHHHHHHHHHHcCCeee
Confidence 9999999999999999999999999975 23332 11 2223344443 3578899999999998653
Q ss_pred CCC------------CCCCCEEEEeccCCCCHHHHHHHHccCChhH
Q 001989 936 TMS------------WPVPGTLMIEPTESESKSWTGIVMLSSPSEK 969 (985)
Q Consensus 936 ~~~------------~p~~~~lris~t~~~t~eeId~~~~~~~l~~ 969 (985)
.+. +...+.+|++++..+|+||||+ +++.|++
T Consensus 390 ~v~~~l~~~g~~~~~~~~~~~l~~~~s~~~T~edID~--~i~~L~k 433 (434)
T d2z67a1 390 RGIKKTDHFGNCYLGTYTHDYIVMNAAIGVRTEDIVN--SVSKLEK 433 (434)
T ss_dssp EEECTTCHHHHTCSSCCSCCEEEEECCTTCCHHHHHH--HHHHHHT
T ss_pred ehhhhccccCeeeecccCCCeEEEecCCCCCHHHHHH--HHHHHhc
Confidence 211 1124789999999999999999 7777765
|
| >d1t3ia_ c.67.1.3 (A:) Probable cysteine desulfurase SufS {Synechocystis sp. PCC 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Probable cysteine desulfurase SufS species: Synechocystis sp. PCC 6803 [TaxId: 1148]
Probab=99.96 E-value=7.5e-28 Score=275.90 Aligned_cols=356 Identities=16% Similarity=0.123 Sum_probs=259.6
Q ss_pred HHHHHHHHHhcC--CC--ccceecCCCCCCCCCcHHHHHHHHhCCcccccc--CCCh--hhHhhhHHHHHHHHHHHHHHh
Q 001989 152 QMIEHMQKLASM--NK--VYKSFIGMGYYNTHVPPVILRNIMENPAWYTQY--TPYQ--AEIAQGRLESLLNFQTMIADL 223 (985)
Q Consensus 152 e~~~~~~~l~~~--n~--~~~~~lG~g~y~~~~p~~v~~~i~~~~~~~t~~--~pyq--~e~sqg~l~~i~e~q~~ia~L 223 (985)
.|+++|..|.+. |+ .|.+.-|.| .+|..+.+.+.. ++..+ +|.. ...++..-+.+.++++.+|+|
T Consensus 6 ~iR~~FP~l~~~~~~~~~iYld~a~~~----~~p~~v~~~~~~---~~~~~~~n~~s~~~~~~~~~~~~~e~aR~~ia~l 78 (408)
T d1t3ia_ 6 TVRQDFPILNQEINGHPLVYLDNAATS----QKPRAVLEKLMH---YYENDNANVHRGAHQLSVRATDAYEAVRNKVAKF 78 (408)
T ss_dssp HHGGGCGGGSCEETTEECEECBTTTCC----CCCHHHHHHHHH---HHHHTCCCC--CCSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCcccccccCCCCeEEeeCcccc----CCCHHHHHHHHH---HHHhcCCCCCchhhHHHHHHHHHHHHHHHHHHHH
Confidence 366667666443 22 344433444 377776555543 22221 2322 135566668889999999999
Q ss_pred cCCCC-cceeeccchHHHHHHHHHHhh-hhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc--------hhhhc
Q 001989 224 TGLPM-SNASLLDEGTAAAEAMAMCNN-IQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL--------KDIDY 293 (985)
Q Consensus 224 ~g~~~-~~~sl~~~~ta~~ea~~~a~~-~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~--------~~l~~ 293 (985)
+|++. ..+.++.++|.+...+..+.. ...++|++|+++..+||++..+|+..++..|+++++++. +++++
T Consensus 79 lga~~~~~i~~~~~tt~~~n~~~~~~~~~~~~~g~~il~s~~e~~s~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~l~~ 158 (408)
T d1t3ia_ 79 INARSPREIVYTRNATEAINLVAYSWGMNNLKAGDEIITTVMEHHSNLVPWQMVAAKTGAVLKFVQLDEQESFDLEHFKT 158 (408)
T ss_dssp TTCSCGGGEEEESSHHHHHHHHHHHTHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHHCCEEEEECBCTTSSBCHHHHHH
T ss_pred hCCCCcccEEeecchHHHHHHHHhhccccccCCCCEEEeecccchhhhhhhhhhhhccCceEeeeeccccccccHHHhhh
Confidence 99975 567777777766554443321 123489999999999999999999888888999998864 34555
Q ss_pred -cCCCEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCC-CCCcccceEEEecCccccccCCCCCCcE
Q 001989 294 -KSGDVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILK-PPGELGADIVVGSAQRFGVPMGYGGPHA 370 (985)
Q Consensus 294 -l~~~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~-~~~~~GaDi~v~s~k~lg~P~~~GGP~~ 370 (985)
++++|++|++++. |.+|.+.|+++|+++||++|++++||+ .+++|.+. +..++|+|++++++++|++ +||+
T Consensus 159 ~~~~~t~lv~i~~~~~~tG~~~p~~~i~~~~~~~g~~~ivDa-~q~~g~~~id~~~~~~D~~~~s~hK~~g-----p~G~ 232 (408)
T d1t3ia_ 159 LLSEKTKLVTVVHISNTLGCVNPAEEIAQLAHQAGAKVLVDA-CQSAPHYPLDVQLIDCDWLVASGHKMCA-----PTGI 232 (408)
T ss_dssp HCCTTEEEEEEESBCTTTCBBCCHHHHHHHHHHTTCEEEEEC-TTTTTTSCCCHHHHTCSEEEEEGGGTTS-----CTTC
T ss_pred ccCCCceEEEEecccccccccCcHHHHhhhhhccCceeeecc-ceecccccccccccCCceEEeccccccC-----CCCc
Confidence 7899999999874 789999999999999999999999954 45666553 4468999999999966643 4578
Q ss_pred EEEEEchhhHhcCCCceeeeeecC-CCCcceeeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcchHHHHHHH
Q 001989 371 AFLATSQEYKRMMPGRIVGVSIDS-SGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQR 449 (985)
Q Consensus 371 G~l~~~~~~~~~lp~~~vG~t~d~-~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~ 449 (985)
|+++++++....+|+...|++... .....+.. .....|+|.||.|+ ..+.++.+++ .++...|++++.++
T Consensus 233 g~l~v~~~~~~~~~p~~~g~~~~~~~~~~~~~~----~~~~~r~e~Gt~~~---~~~~~l~~al--~~~~~~g~~~i~~~ 303 (408)
T d1t3ia_ 233 GFLYGKEEILEAMPPFFGGGEMIAEVFFDHFTT----GELPHKFEAGTPAI---AEAIALGAAV--DYLTDLGMENIHNY 303 (408)
T ss_dssp EEEEECHHHHHHSCCCSCSTTSEEEECSSCEEE----CCTTGGGCCSSCCH---HHHHHHHHHH--HHHHHHCHHHHHHH
T ss_pred cccccchhhhhcCCceecCCccccccccccccc----CCchhhhcCCcHHH---HHHHHHHHHH--HHHHHcCHHHHHHH
Confidence 999999999988888877753211 01111222 12345678899998 5666777766 55556689999999
Q ss_pred HHHHHHHHHHHHhcCCCeEEcCC-----CCcceEEEecCC--HHHHHHHHHHcCceeee-----------e-cCCeEEEE
Q 001989 450 VHGLAGTFALGLKKLGTVEVQGL-----PFFDTVKVKCAD--AHAIASAAYKIEMNLRV-----------V-DSNTVTAS 510 (985)
Q Consensus 450 ~~~~a~~l~~~L~~~g~~~~~~~-----~~~~~~~~~~~~--~~~v~~~L~~~GI~~~~-----------~-~~~~lris 510 (985)
...+++++.+.+.+.+++.++.. .....++|.+++ +.++.+.|.++||.++. . .++.+|+|
T Consensus 304 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~iv~f~~~~~~~~~v~~~L~~~gI~v~~G~~c~~~~~~~~~~~g~vRiS 383 (408)
T d1t3ia_ 304 EVELTHYLWQGLGQIPQLRLYGPNPKHGDRAALASFNVAGLHASDVATMVDQDGIAIRSGHHCTQPLHRLFDASGSARAS 383 (408)
T ss_dssp HHHHHHHHHHHHHTCTTEEEESCCGGGSCBCSEEEEEETTBCHHHHHHHHHTTTEECBCSCTTCHHHHHHTTCCCCEEEE
T ss_pred HHHHHhHHhhhhccCccccccCCCccccCcceEEEEEeCCCCHHHHHHHHhhCCcEEecCcccccHHHHhhcCCccEEEE
Confidence 99999999999999865877642 123467777776 88999999999998752 1 25789999
Q ss_pred eccCCCHHHHHHHHHHHhC
Q 001989 511 FDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 511 ~t~~~t~edId~li~aL~~ 529 (985)
++.+||++|||+|+++|++
T Consensus 384 ~~~ynt~~did~li~~L~~ 402 (408)
T d1t3ia_ 384 LYFYNTKEEIDLFLQSLQA 402 (408)
T ss_dssp CCTTCCHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHH
Confidence 9999999999999999974
|
| >d1pmma_ c.67.1.6 (A:) Glutamate decarboxylase beta, GadB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Pyridoxal-dependent decarboxylase domain: Glutamate decarboxylase beta, GadB species: Escherichia coli [TaxId: 562]
Probab=99.96 E-value=5e-27 Score=271.15 Aligned_cols=386 Identities=12% Similarity=0.047 Sum_probs=265.2
Q ss_pred CCccccCCCCHHHHHHHHHHHhccccCcccccccccccccCCCccccccccccccccccCCCCchhhhhhHHHHHHHHHH
Q 001989 560 THPVFNKYHTEHELLRYIHLLQSKELSLCHSMIPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGE 639 (985)
Q Consensus 560 ~~p~~~~~~se~e~~~~l~~l~~~~~~~~~~~~~lG~~t~~~~~~~~~~~~~~~~f~~~~p~~p~e~~~G~~~~~~e~~~ 639 (985)
.+| ..+++.++..+.++.-.-.|-... .+....|++...+...... .++.+-+.... +.++.+.++..++..
T Consensus 29 ~~p--~~~~~~~~~~~~i~d~l~~dg~~~--~n~asf~~t~~~~~~~~l~---~~~~~~N~~~~-~~~P~~~~lE~~~v~ 100 (450)
T d1pmma_ 29 RFP--LHEMRDDVAFQIINDELYLDGNAR--QNLATFCQTWDDENVHKLM---DLSINKNWIDK-EEYPQSAAIDLRCVN 100 (450)
T ss_dssp SCC--CSCCCHHHHHHHHHHHGGGSCCGG--GBCSCCSCCCCCHHHHHHH---HHTTTCBTTCT-TTSHHHHHHHHHHHH
T ss_pred cCC--ccCCCHHHHHHHHHHHhccCCCcc--ccccccccCCCCHHHHHHH---HHHHhcCCCCc-ccCccHHHHHHHHHH
Confidence 567 588899988888875222221111 1122336666665433222 12333334443 667889999999999
Q ss_pred HHHHHhCCCcc------ceecCcHHHHHHHHHHHHHHHHH----hcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcC
Q 001989 640 WLCTITGFDSF------SLQPNAGAAGEYAGLMVIRAYHK----ARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGT 709 (985)
Q Consensus 640 ~la~l~G~~~~------~~~~~sGa~a~~a~l~air~~~~----~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~ 709 (985)
|+++++|++.. ..++.+|++|++.+++++|..+. ..|......++++..+|.+..++++..|++++.||+
T Consensus 101 ~la~L~~~p~~~~~~~~G~~t~GgSeA~~~a~~aar~~~~~~~~~~g~~~~~~~~~~~~~H~s~~Kaa~~~gi~~~~v~~ 180 (450)
T d1pmma_ 101 MVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWRWRKRMEAAGKPTDKPNLVCGPVQICWHKFARYWDVELREIPM 180 (450)
T ss_dssp HHHHHTTCCCCTTSCCSEEEESSHHHHHHHHHHHHHHHHHHHHHHHTCCCSCCEEEESSCCHHHHHHHHHTTCEEEECCC
T ss_pred HHHHHhCCCccccCCCcCeeeCchHHHHHHHHHHHHHHHHHHhhhcCCCCCCceEEecccHHHHHHHHHHcCCCceEeee
Confidence 99999998641 24556778888777777765322 123223345777888899999999999999999999
Q ss_pred CC-CCCCCHHHHHHHHHhcCCCEEEEEEEcCC-CccccccCHHHHHHHH------HHcCCEEEEEccccccccCCCCC--
Q 001989 710 DA-KGNINIEELRKAAEANRDNLSTLMVTYPS-THGVYEEGIDEICKII------HDNGGQVYMDGANMNAQVGLTSP-- 779 (985)
Q Consensus 710 d~-~g~iD~e~L~~~i~~~~~~t~~Vvv~~pn-~~G~i~~di~eI~~la------~~~galliVD~a~~~~~~~l~~p-- 779 (985)
++ ++.+|+++|+++++ ++|++|+++.++ .+|.++ |+++|+++| +++|+|+|||||+..+...+..+
T Consensus 181 ~~~~~~~d~~~L~~~i~---~~t~~Vv~t~gtt~tG~~d-pv~~i~~i~~~~~~a~~~~i~lHVDAA~gG~~~p~~~~~~ 256 (450)
T d1pmma_ 181 RPGQLFMDPKRMIEACD---ENTIGVVPTFGVTYTGNYE-FPQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFVAPDI 256 (450)
T ss_dssp BTTBCSCCHHHHHHHCC---TTEEEEECBBSCTTTCBBC-CHHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTC
T ss_pred cCCCCcCcHHHHHHHhh---hCceEEEeeeeeccCCCcc-ccchhhHHHHHHHHHhccCcEEEeehhhccceeeeechhh
Confidence 76 49999999999998 899999999886 599999 898888775 66899999999974332222222
Q ss_pred ----CccCCcEEEeCCcccccccCCCCCCceEEEEEcccc-cCcCCCC---ccccCCCCCCCCCCCCCCCCCCcchhhhH
Q 001989 780 ----GYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHL-APFLPSH---PVVSTGGIPAPEKSQPLGTIAAAPWGSAL 851 (985)
Q Consensus 780 ----g~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l-~~~lp~~---~~g~~~~~~~~~~~~~~~~i~s~~~g~~~ 851 (985)
+..++|.+++|+|||+..| +|+|++++++.. ....... +.+. + ..+..+..+. ...
T Consensus 257 ~~~~~~~~aDSi~~s~HK~~~~p-----~g~g~l~~r~~~~~~~~~~~~~~yl~~--~-------~~~~~~~~sr--~~~ 320 (450)
T d1pmma_ 257 VWDFRLPRVKSISASGHKFGLAP-----LGCGWVIWRDEEALPQELVFNVDYLGG--Q-------IGTFAINFSR--PAG 320 (450)
T ss_dssp CCSTTSTTEEEEEEETTTTTCCC-----SSCEEEEESSGGGSCGGGCEEEEETTE--E-------EEECCSCCSC--BSH
T ss_pred hhhhcccceeEeecChhhccCCC-----CCeeEEEecChhhhhhhcccccCcCCC--C-------cCCCcccCcc--chH
Confidence 2346999999999998544 367889888542 2211000 0010 0 0001111111 112
Q ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc--cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHH
Q 001989 852 ILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK--HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMD 929 (985)
Q Consensus 852 ~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~--g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~ 929 (985)
.+...|+.+..+|.+|++++.++..++++||.++|++ +++++.+++..+..+.+.+.+.+ ....+.+..+++++|.+
T Consensus 321 ~~~~~~~~l~~~G~~G~~~~~~~~~~la~~l~~~L~~~~~~el~~~~~p~~~l~~V~Fr~~~-~~~~~~~~~~l~~~L~~ 399 (450)
T d1pmma_ 321 QVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIAKLGPYEFICTGRPDEGIPAVCFKLKD-GEDPGYTLYDLSERLRL 399 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCEEEEEECCTTTBSSEEEEEECT-TCCCSSCHHHHHHHHHT
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEeCCCCCCceEEEEEecCC-cccCCCCHHHHHHHHHH
Confidence 3455789999999999999999999999999999987 35565444323334445666542 11235678899999999
Q ss_pred CCCccCCCCCCC----CCEEEEeccCCCCHHHHHHHHccCChhHHHHhhcc
Q 001989 930 YGFHGPTMSWPV----PGTLMIEPTESESKSWTGIVMLSSPSEKKLHRLKM 976 (985)
Q Consensus 930 ~Gi~~~~~~~p~----~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~~~ 976 (985)
+||+++....|. ...+|+.+...+|++++|+ |++.|++++++++.
T Consensus 400 ~Gw~v~~~~~p~~~~~~~~lRvvv~~~~t~e~~d~--lv~dl~~~v~~l~~ 448 (450)
T d1pmma_ 400 RGWQVPAFTLGGEATDIVVMRIMCRRGFEMDFAEL--LLEDYKASLKYLSD 448 (450)
T ss_dssp TTCBCCEEECCTTCTTCEEEEEECCTTCCHHHHHH--HHHHHHHHHHHHHH
T ss_pred cCCeeeccCcCCCcCCcEEEEEEccCCCCHHHHHH--HHHHHHHHHHHHHh
Confidence 999987533331 2469999999999999999 88999999998864
|
| >d1jf9a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: NifS-like protein/selenocysteine lyase species: Escherichia coli [TaxId: 562]
Probab=99.94 E-value=8.3e-26 Score=258.48 Aligned_cols=315 Identities=16% Similarity=0.154 Sum_probs=219.1
Q ss_pred hhHHHHHHHHHHHHHHHhCCCc-cc-eecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHH----HHHCC
Q 001989 628 QGYQEMFNNLGEWLCTITGFDS-FS-LQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPAT----AAMCG 701 (985)
Q Consensus 628 ~G~~~~~~e~~~~la~l~G~~~-~~-~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~----a~~~G 701 (985)
....+.++++++.+++++|.+. .. ++..++++|+...+.++.. .. ..++++||+++..|+++... ++..|
T Consensus 62 ~~~~~~~e~~R~~ia~~l~~~~~~~i~~~~~~T~~~~~~~~~~~~---~~-~~~g~~il~~~~e~~s~~~~~~~~a~~~g 137 (405)
T d1jf9a_ 62 AQATEKMENVRKRASLFINARSAEELVFVRGTTEGINLVANSWGN---SN-VRAGDNIIISQMEHHANIVPWQMLCARVG 137 (405)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSCGGGEEEESSHHHHHHHHHHHHHH---HH-CCTTCEEEEETTCCGGGTHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHcCCCCcccccccCcHHHHHHHHHhcccc---cc-cCCCCEEEEEeCcccchHHHHHHHHHHcC
Confidence 4456788899999999999754 33 4445556555333332211 11 24688999999888876433 45679
Q ss_pred cEEEEEcCCCCCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCC
Q 001989 702 MKIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPG 780 (985)
Q Consensus 702 ~~vv~v~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg 780 (985)
++++.+|++++|.+|+++++++++ ++|++|++++. |.+|++. |+++|+++||++|++++||++|..+...+ +..
T Consensus 138 ~~v~~~~~~~~g~~~~~~~~~~i~---~~t~lv~~~~v~~~tG~~~-pi~~i~~~~~~~g~~~~vD~~q~~g~~~i-d~~ 212 (405)
T d1jf9a_ 138 AELRVIPLNPDGTLQLETLPTLFD---EKTRLLAITHVSNVLGTEN-PLAEMITLAHQHGAKVLVDGAQAVMHHPV-DVQ 212 (405)
T ss_dssp CEEEEECBCTTSCBCGGGHHHHCC---TTEEEEEEESBCTTTCCBC-CHHHHHHHHHHTTCEEEEECTTTTTTSCC-CHH
T ss_pred cEEEEECCCCCCcCCHHHHHHhcc---CCcEEEEEecCCCcccccC-chHHhhhHHHHcCCeeecccceecccccc-chh
Confidence 999999999999999999999998 89999999997 4699999 99999999999999999999997555433 455
Q ss_pred ccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCC-------CC-----CCCCCCCCCCCCCCcchh
Q 001989 781 YIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTG-------GI-----PAPEKSQPLGTIAAAPWG 848 (985)
Q Consensus 781 ~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~-------~~-----~~~~~~~~~~~i~s~~~g 848 (985)
++++|++++|+|||+ |++|+|++++++++...+++...+... +. ..++.+.+|.++.
T Consensus 213 ~~~~D~~~~s~hK~~------Gp~G~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~e~GT~~~~----- 281 (405)
T d1jf9a_ 213 ALDCDFYVFSGHKLY------GPTGIGILYVKEALLQEMPPWEGGGSMIATVSLSEGTTWTKAPWRFEAGTPNTG----- 281 (405)
T ss_dssp HHTCSEEEEEGGGTT------SCSSCEEEEECHHHHTTCCCSSCSSSSEEECCTTTCCEECCTTGGGCCSSCCHH-----
T ss_pred hcCCceeeccccccc------cCCCceeeeechhhhcccCcccccccccCccccccccccccchhhhcCCCCcHH-----
Confidence 789999999999996 456899999998876666543322210 00 0011223333322
Q ss_pred hhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhccCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHH
Q 001989 849 SALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLM 928 (985)
Q Consensus 849 ~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~ 928 (985)
...++..| ++.+...|+..+.++...+.+++.+.++....+...++.. ....+.+.++ +.+++++.+.|.
T Consensus 282 ~~~~l~~a---l~~~~~~g~~~i~~~~~~L~~~~~~~l~~~~~~~~~~~~~-r~~ivsf~~~------~~~~~~~~~~L~ 351 (405)
T d1jf9a_ 282 GIIGLGAA---LEYVSALGLNNIAEYEQNLMHYALSQLESVPDLTLYGPQN-RLGVIAFNLG------KHHAYDVGSFLD 351 (405)
T ss_dssp HHHHHHHH---HHHHHHHCHHHHHHHHHHHHHHHHHHHTTSTTEEEESCTT-CCSEEEEEET------TCCHHHHHHHHH
T ss_pred HHHHHHHH---HHHHHHhChHHHHHHHHHHHHHHHhhhhcCCcccccCCcC-cCcEEEEEcC------CCCHHHHHHHHH
Confidence 12223333 3444444556666677777888888887632222222221 2234455654 568899999999
Q ss_pred HCCCccCC---CC------CCCCCEEEEeccCCCCHHHHHHHHccCChhHHHHhh
Q 001989 929 DYGFHGPT---MS------WPVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRL 974 (985)
Q Consensus 929 ~~Gi~~~~---~~------~p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~ 974 (985)
++||.++. +. ...++.+|||++.++|+||||+ +++.|+++.+.+
T Consensus 352 ~~gI~v~~G~~c~~~~~~~~~~~g~iRiS~~~ynt~eDid~--l~~~l~~i~r~~ 404 (405)
T d1jf9a_ 352 NYGIAVRTGHHCAMPLMAYYNVPAMCRASLAMYNTHEEVDR--LVTGLQRIHRLL 404 (405)
T ss_dssp HTTEECEEECTTCHHHHHHTTCSCEEEEECCTTCCHHHHHH--HHHHHHHHHHHH
T ss_pred HCCcEEEccchhhhhHHHhcCCCCEEEEECCCCCCHHHHHH--HHHHHHHHHHhc
Confidence 99998752 21 1245899999999999999999 778888877643
|
| >d1t3ia_ c.67.1.3 (A:) Probable cysteine desulfurase SufS {Synechocystis sp. PCC 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Probable cysteine desulfurase SufS species: Synechocystis sp. PCC 6803 [TaxId: 1148]
Probab=99.94 E-value=2.8e-25 Score=254.29 Aligned_cols=353 Identities=16% Similarity=0.139 Sum_probs=235.1
Q ss_pred ccccccc-cccCCCcccc--ccccccccccccCCCCchhhhhhHHHHHHHHHHHHHHHhCCCc-cc-eecCcHHHHHHHH
Q 001989 590 SMIPLGS-CTMKLNATTE--MMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFDS-FS-LQPNAGAAGEYAG 664 (985)
Q Consensus 590 ~~~~lG~-~t~~~~~~~~--~~~~~~~~f~~~~p~~p~e~~~G~~~~~~e~~~~la~l~G~~~-~~-~~~~sGa~a~~a~ 664 (985)
.++||.+ ++.+++.... +.......|.|.+.... ...+...+.++++++.+++++|++. .. ++.++++++....
T Consensus 22 ~~iYld~a~~~~~p~~v~~~~~~~~~~~~~n~~s~~~-~~~~~~~~~~e~aR~~ia~llga~~~~~i~~~~~tt~~~n~~ 100 (408)
T d1t3ia_ 22 PLVYLDNAATSQKPRAVLEKLMHYYENDNANVHRGAH-QLSVRATDAYEAVRNKVAKFINARSPREIVYTRNATEAINLV 100 (408)
T ss_dssp ECEECBTTTCCCCCHHHHHHHHHHHHHTCCCC--CCS-HHHHHHHHHHHHHHHHHHHHTTCSCGGGEEEESSHHHHHHHH
T ss_pred CeEEeeCccccCCCHHHHHHHHHHHHhcCCCCCchhh-HHHHHHHHHHHHHHHHHHHHhCCCCcccEEeecchHHHHHHH
Confidence 4688874 4444443321 11111223444322211 2345566888999999999999974 33 3444455444222
Q ss_pred HHHHHHHHHhcCCCCCCEEEEcCCCCcccHHH----HHHCCcEEEEEcCCCCCCCCHHHHHHHHHhcCCCEEEEEEEcC-
Q 001989 665 LMVIRAYHKARGDHHRNVCIIPVSAHGTNPAT----AAMCGMKIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYP- 739 (985)
Q Consensus 665 l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~----a~~~G~~vv~v~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~p- 739 (985)
....... ...++++|++++..|+++... ++..|++++.+|.+.++..|+++++++++ ++|++|++++.
T Consensus 101 ~~~~~~~----~~~~g~~il~s~~e~~s~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~l~~~~~---~~t~lv~i~~~~ 173 (408)
T d1t3ia_ 101 AYSWGMN----NLKAGDEIITTVMEHHSNLVPWQMVAAKTGAVLKFVQLDEQESFDLEHFKTLLS---EKTKLVTVVHIS 173 (408)
T ss_dssp HHHTHHH----HCCTTCEEEEETTCCGGGTHHHHHHHHHHCCEEEEECBCTTSSBCHHHHHHHCC---TTEEEEEEESBC
T ss_pred Hhhcccc----ccCCCCEEEeecccchhhhhhhhhhhhccCceEeeeeccccccccHHHhhhccC---CCceEEEEeccc
Confidence 2211111 124678999999889876433 45679999999998889999999999997 89999999986
Q ss_pred CCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcC
Q 001989 740 STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFL 819 (985)
Q Consensus 740 n~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~l 819 (985)
+.+|.+. |+++|+++||++|++++||++|..+...+ +..++++|++++++|||+ |++|+|+++++++....+
T Consensus 174 ~~tG~~~-p~~~i~~~~~~~g~~~ivDa~q~~g~~~i-d~~~~~~D~~~~s~hK~~------gp~G~g~l~v~~~~~~~~ 245 (408)
T d1t3ia_ 174 NTLGCVN-PAEEIAQLAHQAGAKVLVDACQSAPHYPL-DVQLIDCDWLVASGHKMC------APTGIGFLYGKEEILEAM 245 (408)
T ss_dssp TTTCBBC-CHHHHHHHHHHTTCEEEEECTTTTTTSCC-CHHHHTCSEEEEEGGGTT------SCTTCEEEEECHHHHHHS
T ss_pred ccccccC-cHHHHhhhhhccCceeeeccceecccccc-cccccCCceEEecccccc------CCCCccccccchhhhhcC
Confidence 4699999 89999999999999999999997666544 455789999999999986 456899999998876666
Q ss_pred CCCccccCCCC-----------CCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc
Q 001989 820 PSHPVVSTGGI-----------PAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK 888 (985)
Q Consensus 820 p~~~~g~~~~~-----------~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~ 888 (985)
+....|++... ..++.+.+|.++. ...++..+..++..+ |..++.++...+.+++.+.+.+
T Consensus 246 ~p~~~g~~~~~~~~~~~~~~~~~~~r~e~Gt~~~~-----~~~~l~~al~~~~~~---g~~~i~~~~~~l~~~l~~~~~~ 317 (408)
T d1t3ia_ 246 PPFFGGGEMIAEVFFDHFTTGELPHKFEAGTPAIA-----EAIALGAAVDYLTDL---GMENIHNYEVELTHYLWQGLGQ 317 (408)
T ss_dssp CCCSCSTTSEEEECSSCEEECCTTGGGCCSSCCHH-----HHHHHHHHHHHHHHH---CHHHHHHHHHHHHHHHHHHHHT
T ss_pred CceecCCcccccccccccccCCchhhhcCCcHHHH-----HHHHHHHHHHHHHHc---CHHHHHHHHHHHHhHHhhhhcc
Confidence 65444432110 0111233333322 112233334444444 5556666777888999988876
Q ss_pred cCCeeecCCC---CceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCC---CCC------CCCCEEEEeccCCCCHH
Q 001989 889 HYPILFRGVN---GTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPT---MSW------PVPGTLMIEPTESESKS 956 (985)
Q Consensus 889 g~~l~~~~~~---~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~---~~~------p~~~~lris~t~~~t~e 956 (985)
...+...++. ......+.+.++ +.+++++.+.|.++||.++. +.. ..++++|||++.++|++
T Consensus 318 ~~~~~~~~~~~~~~~~~~iv~f~~~------~~~~~~v~~~L~~~gI~v~~G~~c~~~~~~~~~~~g~vRiS~~~ynt~~ 391 (408)
T d1t3ia_ 318 IPQLRLYGPNPKHGDRAALASFNVA------GLHASDVATMVDQDGIAIRSGHHCTQPLHRLFDASGSARASLYFYNTKE 391 (408)
T ss_dssp CTTEEEESCCGGGSCBCSEEEEEET------TBCHHHHHHHHHTTTEECBCSCTTCHHHHHHTTCCCCEEEECCTTCCHH
T ss_pred CccccccCCCccccCcceEEEEEeC------CCCHHHHHHHHhhCCcEEecCcccccHHHHhhcCCccEEEECCCCCCHH
Confidence 4333222211 112223455554 67899999999999998753 211 13578999999999999
Q ss_pred HHHHHHccCChhHHHHhh
Q 001989 957 WTGIVMLSSPSEKKLHRL 974 (985)
Q Consensus 957 eId~~~~~~~l~~~~~~~ 974 (985)
|||+ +++.|+++++.+
T Consensus 392 did~--li~~L~~~~~~f 407 (408)
T d1t3ia_ 392 EIDL--FLQSLQATIRFF 407 (408)
T ss_dssp HHHH--HHHHHHHHHHHT
T ss_pred HHHH--HHHHHHHHHHHh
Confidence 9999 889999988754
|
| >d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.94 E-value=6.2e-26 Score=262.70 Aligned_cols=377 Identities=12% Similarity=0.080 Sum_probs=243.6
Q ss_pred CCccccCCCCHHHHHHHHHHHhccccCcccccccccccccCCCccccc-----cccccccccccCCCCchhhhhh--HHH
Q 001989 560 THPVFNKYHTEHELLRYIHLLQSKELSLCHSMIPLGSCTMKLNATTEM-----MPVTWPSFANIHPFAPADQAQG--YQE 632 (985)
Q Consensus 560 ~~p~~~~~~se~e~~~~l~~l~~~~~~~~~~~~~lG~~t~~~~~~~~~-----~~~~~~~f~~~~p~~p~e~~~G--~~~ 632 (985)
.+| +.|++|.++++.+++++..|.....+....|..+..+....-. .....+...++.|++| +.+++ ..+
T Consensus 18 ~lP--~~G~~~~~i~~~l~~~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 94 (445)
T d3bc8a1 18 KCP--EDGWDESTLELFLHELAVMDSNNFLGNCGVGEREGRVASALVARRHYRFIHGIGRSGDISAVQP-KAAGSSLLNK 94 (445)
T ss_dssp CCC--SSCCCHHHHHHHHHHHHHTBGGGCTTCCCCSSCCCCCSCHHHHHHTTTCCSCBCC-------CC-SBHHHHHHHH
T ss_pred CCC--cCCCCHHHHHHHHHHHHhccCCcccCcccccccCccccHHHHHHHHHhhccccccCcchhhhhh-hhccchHHHH
Confidence 356 6899999999999999988743222223334332222221100 0011222333556666 55554 355
Q ss_pred HHHHHHHHHHHHhCCCcc--ceecCcHHH-HHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcC
Q 001989 633 MFNNLGEWLCTITGFDSF--SLQPNAGAA-GEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGT 709 (985)
Q Consensus 633 ~~~e~~~~la~l~G~~~~--~~~~~sGa~-a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~ 709 (985)
+..++.+|+++++|++.. .++.++|++ ++.+++.++|. ++ .++++||+|...|.+..+++...|++.+.|++
T Consensus 95 le~~~~~~~~~l~g~~~~~~~~~~~~~t~~~~~~~l~a~~~----~~-~~~~~vi~~~~~H~s~~~a~~~~g~~~~~v~~ 169 (445)
T d3bc8a1 95 ITNSLVLNVIKLAGVHSVASCFVVPMATGMSLTLCFLTLRH----KR-PKAKYIIWPRIDQKSCFKSMVTAGFEPVVIEN 169 (445)
T ss_dssp HHHHHHHHHHHHHTCTTCCEEEEESSCHHHHHHHHHHHHHH----HC-TTCCEEEEECCCCHHHHHHHHHTTCEEEEECC
T ss_pred HHHHHHHHHHHHhCCCcccCccccccchHHHHHHHHHHHHH----hC-CCCCEEEEcCcccHHHHHHHHHcCCeeEEEEe
Confidence 667788999999999863 233333443 33344444433 22 35678999999999999999999999888864
Q ss_pred ---CCCCCCCHHHHHHHHHhc-CCCEEEEEEEcCCC-ccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCC----C
Q 001989 710 ---DAKGNINIEELRKAAEAN-RDNLSTLMVTYPST-HGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSP----G 780 (985)
Q Consensus 710 ---d~~g~iD~e~L~~~i~~~-~~~t~~Vvv~~pn~-~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~p----g 780 (985)
++++.+|+++|+++|++. .++|++|++++|++ +|.++ |+++|+++||++|++||||+|+..+......+ +
T Consensus 170 ~~~~~~~~id~~~l~~~i~~~~~~~~~~v~~~~~~~~~G~~~-~~~~i~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~ 248 (445)
T d3bc8a1 170 VLEGDELRTDLKAVEAKIQELGPEHILCLHSTTACFAPRVPD-RLEELAVICANYDIPHVVNNAYGLQSSKCMHLIQQGA 248 (445)
T ss_dssp EEETTEEECCHHHHHHHHHHHCGGGEEEEEEESSCCTTBCCC-CHHHHHHHHHHHTCCEEEECTTTTTCHHHHHHHHHHH
T ss_pred eccCcccccCHHHHHHHHHhccccCeEEEEEeCCCCCCeeeh-hHHHHHHHHHHhCCcEEEEccchhhhhhccccchhcc
Confidence 456899999999999754 24799999999875 89998 99999999999999999999985332221111 1
Q ss_pred c-cCCcEEEeCCcccccccCCCCCCceEEEEEccc-ccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHH
Q 001989 781 Y-IGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKH-LAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYT 858 (985)
Q Consensus 781 ~-~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~-l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a 858 (985)
. .++|++++++||+|+.|. |+|++++++. +.+.+.....+ . . .......+|+
T Consensus 249 ~~~~vd~~~~s~hK~~~~p~-----g~~~l~~~~~~~~~~~~~~~~~-------------~-~-------~~~~~~~~~~ 302 (445)
T d3bc8a1 249 RVGRIDAFVQSLDKNFMVPV-----GGAIIAGFNEPFIQDISKMYPG-------------R-A-------SASPSLDVLI 302 (445)
T ss_dssp HHSCCCEEEEEHHHHHSCCS-----SCEEEEESCHHHHHHHHHHSCS-------------C-B-------CSHHHHHHHH
T ss_pred CcCCcceEEecCccccccCC-----CCceeeeCChHHHHHHHHHHhh-------------c-c-------cCcchHHHHH
Confidence 1 258999999999986442 4567777653 33222111000 0 0 1112345688
Q ss_pred HHHHhcHHHHHHHHHHHHHHHHHHHHHhhc-----cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCc
Q 001989 859 YIAMMGSKGLTEASKIAILNANYMAKRLEK-----HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFH 933 (985)
Q Consensus 859 ~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~-----g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~ 933 (985)
++..+|.+|+.+..+...++++|+.++|++ +..+.. .+.... ...+.+.......+.+..++...|.+.||.
T Consensus 303 ~~~~~g~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~l~-~~~~~~--~~~~~l~~~~~~~~~~~~~l~~~L~~~gI~ 379 (445)
T d3bc8a1 303 TLLSLGCSGYRKLLKERKEMFVYLSTQLKKLAEAHNERLLQ-TPHNPI--SLAMTLKTIDGHHDKAVTQLGSMLFTRQVS 379 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCBCC-CTTCSS--EEEEECTTTSSSSSCHHHHHHHHHHHTTCC
T ss_pred HHHHHhhhcchhhHHHHHHHHHHHHHHHHHHHhhcCceeec-CCCCCc--ceEEEeeeccccCCCCHHHHHHHHHHcCCC
Confidence 888999999999999999999999999875 223221 111111 223333221111234567788899999875
Q ss_pred cCCCC---------------CC------CCCEEEEeccCCCCHHHHHHHHccCChhHHHHhhcc
Q 001989 934 GPTMS---------------WP------VPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRLKM 976 (985)
Q Consensus 934 ~~~~~---------------~p------~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~~~ 976 (985)
..... +. ....+|++++..+|+||||+ ++++|+++++.++.
T Consensus 380 ~~~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~i~i~~~~~~T~eDID~--~v~~L~kilk~~rk 441 (445)
T d3bc8a1 380 GARAVPLGNVQTVSGHTFRGFMSHADNYPCAYLNAAAAIGMKMQDVDL--FIKRLDKCLNIVRK 441 (445)
T ss_dssp SCEEECSCCEEEETTEEEETTTTTSSCCSSCEEEEECCTTCCHHHHHH--HHHHHHHHHHHHHH
T ss_pred cceeeccccccchhhhhhhhcCCCCccCCCCeEEEeCcCCCCHHHHHH--HHHHHHHHHHHHHh
Confidence 32100 10 12569999999999999999 88999999998875
|
| >d1js3a_ c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Pyridoxal-dependent decarboxylase domain: DOPA decarboxylase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.94 E-value=1.3e-25 Score=260.59 Aligned_cols=397 Identities=14% Similarity=0.096 Sum_probs=260.0
Q ss_pred CCCccCCCCCCCCccccCCCCHHHHHHHHHHHhccccCcccccccccccccCCCc---cccccccccccccccCCCCchh
Q 001989 549 PSGLTRESPYLTHPVFNKYHTEHELLRYIHLLQSKELSLCHSMIPLGSCTMKLNA---TTEMMPVTWPSFANIHPFAPAD 625 (985)
Q Consensus 549 p~~~~~~~~~~~~p~~~~~~se~e~~~~l~~l~~~~~~~~~~~~~lG~~t~~~~~---~~~~~~~~~~~f~~~~p~~p~e 625 (985)
|..++..=+. .+| +.+.+.+++++++++.-........+..|+|+-+..... ..++.. ...|-+.... +
T Consensus 35 p~~l~~~~~~-~~P--~~g~~~~~~l~~~~~~i~~~~~~~~~P~f~~~~~~~~~~~~~l~~~~~----~~~n~n~~~~-~ 106 (476)
T d1js3a_ 35 PGYLRPLIPA-TAP--QEPDTFEDILQDVEKIIMPGVTHWHSPYFFAYFPTASSYPAMLADMLC----GAIGCIGFSW-A 106 (476)
T ss_dssp TTCSGGGSCS-SCC--SSCCCHHHHHHHHHHTTGGGCCCTTSTTBCSSSCCCCCHHHHHHHHHH----HHHCCCCSSG-G
T ss_pred hHHHHHhcCc-ccC--cCCCCHHHHHHHHHHHHhCCCCCCCCCCeeEeCCCCCCHHHHHHHHHH----Hhhcccccch-h
Confidence 4455433232 567 688899999999998776664434456777752211111 111211 1222233333 6
Q ss_pred hhhhHHHHHHHHHHHHHHHhCCCcc----------ceecCcHHHHHHHHHHHHHHHHHh----c--CC-----CCCCEEE
Q 001989 626 QAQGYQEMFNNLGEWLCTITGFDSF----------SLQPNAGAAGEYAGLMVIRAYHKA----R--GD-----HHRNVCI 684 (985)
Q Consensus 626 ~~~G~~~~~~e~~~~la~l~G~~~~----------~~~~~sGa~a~~a~l~air~~~~~----~--g~-----~~~~~II 684 (985)
.++...++..++.+|+++++|++.. .++.++|+++++.++.++|..... + |. .++..|+
T Consensus 107 ~sp~~t~iE~~v~~wl~~l~g~p~~~~~~~~~~~~G~~~~Ggs~anl~al~~AR~~~~~~~~~~~~g~~~~~~~~~~vv~ 186 (476)
T d1js3a_ 107 ASPACTELETVMMDWLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTKVVRRLQAASPGLTQGAVLEKLVAY 186 (476)
T ss_dssp GCHHHHHHHHHHHHHHHHHTTCCGGGCCTTTCSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHEEEE
T ss_pred hhhhHHHHHHHHHHHHHHHhCCCcccccCCCCCCCceECCcHHHHHHHHHHHHHHHHHHhhcccccCcccccccCceEEE
Confidence 6788889999999999999999752 256677888998888888764311 1 10 0123577
Q ss_pred EcCCCCcccHHHHHHCCcEEEEEcCCCCCCCCHHHHHHHHHhc---CCCEEEEEEEcCC-CccccccCHHHHHHHHHHcC
Q 001989 685 IPVSAHGTNPATAAMCGMKIVSVGTDAKGNINIEELRKAAEAN---RDNLSTLMVTYPS-THGVYEEGIDEICKIIHDNG 760 (985)
Q Consensus 685 v~~~~Hg~~~~~a~~~G~~vv~v~~d~~g~iD~e~L~~~i~~~---~~~t~~Vvv~~pn-~~G~i~~di~eI~~la~~~g 760 (985)
+++.+|.+..+++...|+.++.||+|++|++|+++|+++|++. ...+.+|+.+..+ .+|.++ |+++|+++|+++|
T Consensus 187 ~s~~~H~Si~ka~~~lGl~~~~v~~d~~~~md~~~L~~~i~~~~~~g~~p~~VvataGtt~~G~iD-pl~~I~~i~~~~~ 265 (476)
T d1js3a_ 187 ASDQAHSSVERAGLIGGVKLKAIPSDGKFAMRASALQEALERDKAAGLIPFFVVATLGTTSCCSFD-NLLEVGPICHEED 265 (476)
T ss_dssp EETTCCHHHHHHHHHHTCEEEEECCCTTSCCCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBC-CHHHHHHHHHHTT
T ss_pred ecccccHHHHHHHHhcCceEEEeccCCCCCcCHHHHHHHHHHHHhcCCCcEEEeecCCCccceeec-cHHHHHHHHHhcC
Confidence 8999999999999999999999999999999999999999742 1235677778876 599999 9999999999999
Q ss_pred CEEEEEccccccccCCCCC-----CccCCcEEEeCCcccccccCCCCCCceEEEEEcccc--cCcC---CCCcccc-CCC
Q 001989 761 GQVYMDGANMNAQVGLTSP-----GYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHL--APFL---PSHPVVS-TGG 829 (985)
Q Consensus 761 alliVD~a~~~~~~~l~~p-----g~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l--~~~l---p~~~~g~-~~~ 829 (985)
+|+|||+|+.......... +-..+|.++.++|||+..|++ .|++++++.. ...+ +.+.... ..+
T Consensus 266 ~wlHVDAA~Gg~~~~~~~~~~~~~gi~~aDSit~d~HK~l~~P~~-----~g~~l~r~~~~~~~~~~~~~~~~~~~~~~~ 340 (476)
T d1js3a_ 266 IWLHVDAAYAGSAFICPEFRHLLNGVEFADSFNFNPHKWLLVNFD-----CSAMWVKRRTDLTGAFKLDPVYLKHSHQGS 340 (476)
T ss_dssp CEEEEECTTGGGGGGSTTTGGGGTTGGGCSEEEECHHHHSSCCSS-----CEEEEESCHHHHHGGGC------------C
T ss_pred cEEEEecccchhhhhhcchhhhhcCCcccceeeecCccccccCCc-----ceeecccchHHHHHHHhcChhhhccccccc
Confidence 9999999874222111111 223589999999999987754 4677777531 1111 1111000 000
Q ss_pred CCCC-CCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc--cCCeeecCCCCceeeEEE
Q 001989 830 IPAP-EKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK--HYPILFRGVNGTVAHEFI 906 (985)
Q Consensus 830 ~~~~-~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~--g~~l~~~~~~~~~~~~~i 906 (985)
.... -...... ++. ...++..|+.+..+|.+|++++.++.+++++|+.++|++ +++++.+ +.++.++
T Consensus 341 ~~~~~~~~~~~~--~sr----~~~al~lw~~l~~~G~~g~~~~i~~~~~lA~~l~~~l~~~~~fel~~~----p~l~iV~ 410 (476)
T d1js3a_ 341 GLITDYRHWQLP--LGR----RFRSLKMWFVFRMYGVKGLQAYIRKHVQLSHEFEAFVLQDPRFEVCAE----VTLGLVC 410 (476)
T ss_dssp CSCCCGGGSSSC--SCC----CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTEEECSC----CCSSEEE
T ss_pred cccccccccccc--cch----hhHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhcCCCeEEECC----CceEEEE
Confidence 0000 0001111 111 122345799999999999999999999999999999986 4555422 3455566
Q ss_pred EEecCccccCCCCHHHHHHHHHHCCC-ccCCCCCCCCCEEEEecc-CCCCHHHHHHHHccCChhHHHHhhc
Q 001989 907 VDLRGLKNTAGIEPEDVAKRLMDYGF-HGPTMSWPVPGTLMIEPT-ESESKSWTGIVMLSSPSEKKLHRLK 975 (985)
Q Consensus 907 v~~~~~~~~~g~~~~~v~~~L~~~Gi-~~~~~~~p~~~~lris~t-~~~t~eeId~~~~~~~l~~~~~~~~ 975 (985)
+++.+ .+.-...+.++|.+.|. ++......-...||+++. ..+|++|||. +++.|+++.+++-
T Consensus 411 Fr~~~----~d~~n~~l~~~l~~~G~~~~s~t~~~g~~~lR~~i~n~~Tt~~did~--~~~~i~~~a~~ll 475 (476)
T d1js3a_ 411 FRLKG----SDGLNEALLERINSARKIHLVPCRLRGQFVLRFAICSRKVESGHVRL--AWEHIRGLAAELL 475 (476)
T ss_dssp EEESS----CHHHHHHHHHHHHHHTSCBCEEEEETTEEEEEEECCCTTCCHHHHHH--HHHHHHHHHHHHH
T ss_pred EEccC----ChHHHHHHHHHHHhcCCEEEeeeeECCEEEEEEEeCCCCCCHHHHHH--HHHHHHHHHHHHh
Confidence 77642 01113567888888773 333221111237999987 6789999999 8899998887763
|
| >d1p3wa_ c.67.1.3 (A:) Cysteine desulfurase IscS {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cysteine desulfurase IscS species: Escherichia coli [TaxId: 562]
Probab=99.93 E-value=1.1e-23 Score=239.23 Aligned_cols=318 Identities=11% Similarity=0.115 Sum_probs=213.5
Q ss_pred hhHHHHHHHHHHHHHHHhCCCccceec-CcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHH---HHHCCcE
Q 001989 628 QGYQEMFNNLGEWLCTITGFDSFSLQP-NAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPAT---AAMCGMK 703 (985)
Q Consensus 628 ~G~~~~~~e~~~~la~l~G~~~~~~~~-~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~---a~~~G~~ 703 (985)
.-..+.++++++.+++++|.+...+.. ++++++...++.++.... ..++++||+++..|+++... ++..|++
T Consensus 44 ~~~~~~~~~~R~~iA~~lg~~~~~I~~~~~~t~~l~~~~~~~~~~~----~~~gd~Vv~~~~~~~s~~~~~~~~~~~G~~ 119 (391)
T d1p3wa_ 44 WQAEEAVDIARNQIADLVGADPREIVFTSGATESDNLAIKGAANFY----QKKGKHIITSKTEHKAVLDTCRQLEREGFE 119 (391)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCGGGEEEESSHHHHHHHHHHHHHHHH----GGGCCEEEEETTSCHHHHHHHHHHHHTTCE
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCcEEEECCHHHHHHHHHhhhhhhh----cCCCCEEEEeccccchHHHHHHHHHHcCCE
Confidence 345677889999999999999876544 445555543443332211 13678999999988776443 3467999
Q ss_pred EEEEcCCCCCCCCHHHHHHHHHhcCCCEEEEEEEcCC-CccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCcc
Q 001989 704 IVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPS-THGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYI 782 (985)
Q Consensus 704 vv~v~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~pn-~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~ 782 (985)
++.+|.+.+|.+|+++++++++ ++|++|++++++ .+|.+. |+++|+++||++|+++++|++|..+...+ +...+
T Consensus 120 v~~v~~~~~~~~d~~~~~~~i~---~~T~lv~is~~~n~tG~~~-~~~~I~~~~~~~~~~~ivD~~~~~g~~~~-d~~~~ 194 (391)
T d1p3wa_ 120 VTYLAPQRNGIIDLKELEAAMR---DDTILVSIMHVNNEIGVVQ-DIAAIGEMCRARGIIYHVDATQSVGKLPI-DLSQL 194 (391)
T ss_dssp EEEECCCTTSCCCHHHHHHHCC---TTEEEEECCSBCTTTCCBC-CHHHHHHHHHHHTCEEEEECTTTBTTBCC-CTTTS
T ss_pred EEEeCCCCCCeEcHHHHHHhCC---CCcEEEEEECCCCCCeeEC-CHHHHHHHhccCCcEEEEeeccccCCccc-cchhc
Confidence 9999999889999999999998 899999999985 699998 89999999999999999999997665543 45678
Q ss_pred CCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHH
Q 001989 783 GADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAM 862 (985)
Q Consensus 783 g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~ 862 (985)
++|++++++|||+ |++|.|+++++++.....+....|+... +....++.++. ....+..+ +..
T Consensus 195 ~~D~~~~s~~k~~------g~~g~g~~~~~~~~~~~~~~~~~gg~~~---~~~~~~~~~~~-----~~~~l~~~---~~~ 257 (391)
T d1p3wa_ 195 KVDLMSFSGHKIY------GPKGIGALYVRRKPRVRIEAQMHGGGHE---RGMRSGTLPVH-----QIVGMGEA---YRI 257 (391)
T ss_dssp CCSEEEEESTTTT------SCSSCEEEEECBTTBCCCCCSSCSSCTT---TTTSCSCCCHH-----HHHHHHHH---HHH
T ss_pred ccccccccccccc------CCCceEEEEEecchhcccCCcccCCccc---cCcccCcchhh-----hhhhhhhh---hhH
Confidence 8999999999996 5668899999988776666554443211 00111111111 11111111 111
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHHhhccCCeeec-CCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCC-CC--
Q 001989 863 MGSKGLTEASKIAILNANYMAKRLEKHYPILFR-GVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPT-MS-- 938 (985)
Q Consensus 863 lg~eGl~~~~~~~~~~a~~l~~~L~~g~~l~~~-~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~-~~-- 938 (985)
. .+...+..++......++.++|.+....... .........+.+.++ +.+.+++...|.+.++-.+. +.
T Consensus 258 ~-~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~l~~i~v~~G~~c~~~ 330 (391)
T d1p3wa_ 258 A-KEEMATEMERLRGLRNRLWNGIKDIEEVYLNGDLEHGAPNILNVSFN------YVEGESLIMALKDLAVSSGSACTSA 330 (391)
T ss_dssp H-HHHHHHHHHHHHHHHHHHHHTTTTSTTEEECSCTTTSCTTEEEEEET------TSCHHHHHHHTTTEECBCCCC----
T ss_pred H-HHHhhHHHHHHHHHHHHHHHHHHhhcCeeecccccccCceEEEEEeC------CCChHHHHHHhCCCEEEccccccCC
Confidence 1 1223333455666777788888753222211 111111222344443 56788888887543332211 11
Q ss_pred --CC--------C-----CCEEEEeccCCCCHHHHHHHHccCChhHHHHhhccCCcc
Q 001989 939 --WP--------V-----PGTLMIEPTESESKSWTGIVMLSSPSEKKLHRLKMGRQI 980 (985)
Q Consensus 939 --~p--------~-----~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~~~~~~~ 980 (985)
.| + .+.+|||++.++|+||||+ +++.|+++++++|+..++
T Consensus 331 ~~~~~~~l~~~g~~~~~~~g~iRiS~~~~nt~edid~--l~~~l~~~l~~lr~~~~~ 385 (391)
T d1p3wa_ 331 SLEPSYVLRALGLNDELAHSSIRFSLGRFTTEEEIDY--TIELVRKSIGRLRDLSPL 385 (391)
T ss_dssp --CCCHHHHHHTCCHHHHHTEEEEECCTTCCHHHHHH--HHHHHHHHHHHHHHSCHH
T ss_pred ccchhHHHHHcCCCccccCCEEEEecCCCCCHHHHHH--HHHHHHHHHHHHHHhChH
Confidence 11 1 2679999999999999999 899999999999987654
|
| >d1elua_ c.67.1.3 (A:) Cystine C-S lyase C-des {Synechocystis sp. [TaxId: 1143]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystine C-S lyase C-des species: Synechocystis sp. [TaxId: 1143]
Probab=99.92 E-value=4e-24 Score=241.97 Aligned_cols=311 Identities=14% Similarity=0.069 Sum_probs=206.5
Q ss_pred hhhhhHHHHHHHHHHHHHHHhCCCccce-ecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHH----HHH
Q 001989 625 DQAQGYQEMFNNLGEWLCTITGFDSFSL-QPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPAT----AAM 699 (985)
Q Consensus 625 e~~~G~~~~~~e~~~~la~l~G~~~~~~-~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~----a~~ 699 (985)
...+...+.++++++++++++|++...+ +.++|++|+ .++++++ ...++++|++++..|+++... ++.
T Consensus 43 ~~~~~~~~~~~~~r~~la~~~~~~~~~i~~~~g~t~a~---~~~~~~l----~~~~g~~i~~~~~~~~s~~~~~~~~~~~ 115 (381)
T d1elua_ 43 AANQHIQQLIAQLRQALAETFNVDPNTITITDNVTTGC---DIVLWGL----DWHQGDEILLTDCEHPGIIAIVQAIAAR 115 (381)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSCGGGEEEESSHHHHH---HHHHHHS----CCCTTCEEEEETTCCHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHhCCCcccEEEECChHHHh---hhcchhh----hhcCCceEEEeccccceeeecccccccc
Confidence 4456667888899999999999987654 445555554 3444432 124788999999888765443 345
Q ss_pred CCcEEEEEcCCCCCCC--CHHHHHHHHHhcCCCEEEEEEEcCC-CccccccCHHHHHHHHHHc----CCEEEEEcccccc
Q 001989 700 CGMKIVSVGTDAKGNI--NIEELRKAAEANRDNLSTLMVTYPS-THGVYEEGIDEICKIIHDN----GGQVYMDGANMNA 772 (985)
Q Consensus 700 ~G~~vv~v~~d~~g~i--D~e~L~~~i~~~~~~t~~Vvv~~pn-~~G~i~~di~eI~~la~~~----galliVD~a~~~~ 772 (985)
.|++++.+|.+.+... +.+.++++++ ++|++|++++++ .+|.+. |+++|.++||++ |+++++|++|..+
T Consensus 116 ~g~~~~~v~~~~~~~~~~~~~~l~~~i~---~~t~~v~i~~~~n~tG~~~-~~~~I~~l~~~~~~~~~~~~~vD~~~~~g 191 (381)
T d1elua_ 116 FGITYRFFPVAATLNQGDAAAVLANHLG---PKTRLVILSHLLWNTGQVL-PLAEIMAVCRRHQGNYPVRVLVDGAQSAG 191 (381)
T ss_dssp HCCEEEEECCGGGSSSSCHHHHHHTTCC---TTEEEEEEESBCTTTCCBC-CHHHHHHHHHHCCSSSCCEEEEECTTTBT
T ss_pred ccccccccccccccccchHHHHHHhhhc---ccccccccccccccccccc-hhhHHHHHHhhcccccccccccccccccc
Confidence 7999999998654332 2566666666 899999999985 699998 899999999984 6999999999755
Q ss_pred ccCCCCCCccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCC---------CC---CCCCCCCC
Q 001989 773 QVGLTSPGYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGI---------PA---PEKSQPLG 840 (985)
Q Consensus 773 ~~~l~~pg~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~---------~~---~~~~~~~~ 840 (985)
...+ ...++++|++++++||||+ |++|+|+++++++....+.+...|+.... .. .....++.
T Consensus 192 ~~~~-~~~~~~~D~~~~s~~K~~~-----~p~G~g~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~ 265 (381)
T d1elua_ 192 SLPL-DFSRLEVDYYAFTGHKWFA-----GPAGVGGLYIHGDCLGEINPTYVGWRSITYGAKGEPTGWAEGGKRFEVATS 265 (381)
T ss_dssp TBCC-CTTTSCCSEEEEESSSTTC-----CCTTCEEEEECTTTGGGCCCCSCCTTTEEECTTSCEEEECSGGGGGCCSCC
T ss_pred cccc-ccccccccccccccccccc-----ccchhhHHHhhHHHHHhcCcccccccccccccccccccccccccccccccc
Confidence 4433 4567789999999999985 23488999999877766544333321100 00 00111121
Q ss_pred CCCCcchhhhHHHHHHHHHHHHhcHHHH-HHHHHHHHHHHHHHHHHhhccCCeeecCCCCceeeEEEEEecCccccCCCC
Q 001989 841 TIAAAPWGSALILPISYTYIAMMGSKGL-TEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIE 919 (985)
Q Consensus 841 ~i~s~~~g~~~~~~~a~a~l~~lg~eGl-~~~~~~~~~~a~~l~~~L~~g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~ 919 (985)
+.. ....+.+|...+. ..|. +.+.++..++++++.++|++...+...++..+....+.+.+.+ ...
T Consensus 266 ~~~-----~~~~~~~a~~~~~---~~g~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~vsf~~~~-----~~~ 332 (381)
T d1elua_ 266 AYP-----QYAGLLAALQLHQ---RQGTAEERYQAICQRSEFLWRGLNQLPHVHCLATSAPQAGLVSFTVDS-----PLG 332 (381)
T ss_dssp CHH-----HHHHHHHHHHHHH---HHCCHHHHHHHHHHHHHHHHHHHHHSTTEEESCSSCCSSSEEEEEECS-----SSC
T ss_pred cch-----hhhhhhhhhhhHH---HhcccccchhhhhhHHHHHHHHHhcCCCeEecCCCCccccEEEEEcCC-----CCC
Confidence 111 1222233333333 3333 3445677888999999998733332222212222233444431 346
Q ss_pred HHHHHHHHHHCCCccCCCCCCCCCEEEEeccCCCCHHHHHHHHccCChhH
Q 001989 920 PEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKSWTGIVMLSSPSEK 969 (985)
Q Consensus 920 ~~~v~~~L~~~Gi~~~~~~~p~~~~lris~t~~~t~eeId~~~~~~~l~~ 969 (985)
.+++.+.|.++||.+..... ++++|||++.+||+||||+ +++.|++
T Consensus 333 ~~~i~~~L~~~gi~v~~~~~--~~~lRis~~~~nt~edid~--ll~~l~e 378 (381)
T d1elua_ 333 HRAIVQKLEEQRIYLRTIAD--PDCIRACCHYITDEEEINH--LLARLAD 378 (381)
T ss_dssp HHHHHHHHHHTTEECEEETT--TTEEEEECCTTCCHHHHHH--HHHHHTT
T ss_pred HHHHHHHHHhCCcEEEecCC--CCEEEEecCCCCCHHHHHH--HHHHHHh
Confidence 78899999999998865443 4899999999999999999 6666654
|
| >d1p3wa_ c.67.1.3 (A:) Cysteine desulfurase IscS {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cysteine desulfurase IscS species: Escherichia coli [TaxId: 562]
Probab=99.91 E-value=1.2e-22 Score=230.81 Aligned_cols=295 Identities=16% Similarity=0.138 Sum_probs=212.9
Q ss_pred hhhHHHHHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhh-hcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEE
Q 001989 206 AQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNI-QKGKKKTFIIASNCHPQTIDICITRADGFDIKVV 284 (985)
Q Consensus 206 sqg~l~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~-~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~ 284 (985)
++-.-+.+.++|+.+|+++|+++.++.+++|+|.+...++.+... ..++||+||+++.+|+++..+++. ++..|++++
T Consensus 43 ~~~~~~~~~~~R~~iA~~lg~~~~~I~~~~~~t~~l~~~~~~~~~~~~~~gd~Vv~~~~~~~s~~~~~~~-~~~~G~~v~ 121 (391)
T d1p3wa_ 43 GWQAEEAVDIARNQIADLVGADPREIVFTSGATESDNLAIKGAANFYQKKGKHIITSKTEHKAVLDTCRQ-LEREGFEVT 121 (391)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCGGGEEEESSHHHHHHHHHHHHHHHHGGGCCEEEEETTSCHHHHHHHHH-HHHTTCEEE
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCcEEEECCHHHHHHHHHhhhhhhhcCCCCEEEEeccccchHHHHHHH-HHHcCCEEE
Confidence 344456788899999999999999999999999887766654321 124899999999999999998875 445799999
Q ss_pred EeCc--------hhhhc-cCCCEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCC-CCCCcccceEEE
Q 001989 285 VSDL--------KDIDY-KSGDVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTIL-KPPGELGADIVV 353 (985)
Q Consensus 285 ~v~~--------~~l~~-l~~~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l-~~~~~~GaDi~v 353 (985)
.++. +++++ ++++|++|+++++ |.+|.+.|+++|+++||++|++++||+ .++.|.. .+...+++|+++
T Consensus 122 ~v~~~~~~~~d~~~~~~~i~~~T~lv~is~~~n~tG~~~~~~~I~~~~~~~~~~~ivD~-~~~~g~~~~d~~~~~~D~~~ 200 (391)
T d1p3wa_ 122 YLAPQRNGIIDLKELEAAMRDDTILVSIMHVNNEIGVVQDIAAIGEMCRARGIIYHVDA-TQSVGKLPIDLSQLKVDLMS 200 (391)
T ss_dssp EECCCTTSCCCHHHHHHHCCTTEEEEECCSBCTTTCCBCCHHHHHHHHHHHTCEEEEEC-TTTBTTBCCCTTTSCCSEEE
T ss_pred EeCCCCCCeEcHHHHHHhCCCCcEEEEEECCCCCCeeECCHHHHHHHhccCCcEEEEee-ccccCCccccchhccccccc
Confidence 9865 34555 8999999999987 789999999999999999999999953 4456544 355789999999
Q ss_pred ecCccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHH
Q 001989 354 GSAQRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAM 433 (985)
Q Consensus 354 ~s~k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~ 433 (985)
++++++. |++|.|+++++++..+.+++...|+... .+.+.++.++ ....++..++
T Consensus 201 ~s~~k~~-----g~~g~g~~~~~~~~~~~~~~~~~gg~~~-----------------~~~~~~~~~~---~~~~~l~~~~ 255 (391)
T d1p3wa_ 201 FSGHKIY-----GPKGIGALYVRRKPRVRIEAQMHGGGHE-----------------RGMRSGTLPV---HQIVGMGEAY 255 (391)
T ss_dssp EESTTTT-----SCSSCEEEEECBTTBCCCCCSSCSSCTT-----------------TTTSCSCCCH---HHHHHHHHHH
T ss_pred ccccccc-----CCCceEEEEEecchhcccCCcccCCccc-----------------cCcccCcchh---hhhhhhhhhh
Confidence 9996653 4567899999999888888777664211 0123444444 2333333332
Q ss_pred HHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCC-C--CcceEEEecCC--HHHHHHHHHHcCceee------e-
Q 001989 434 YAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGL-P--FFDTVKVKCAD--AHAIASAAYKIEMNLR------V- 501 (985)
Q Consensus 434 ~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~-~--~~~~~~~~~~~--~~~v~~~L~~~GI~~~------~- 501 (985)
... .+...+..++..++..++.++|.++++..+... + ....+.+..+. ..++...|.+.+|... .
T Consensus 256 --~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~v~~G~~c~~~~~ 332 (391)
T d1p3wa_ 256 --RIA-KEEMATEMERLRGLRNRLWNGIKDIEEVYLNGDLEHGAPNILNVSFNYVEGESLIMALKDLAVSSGSACTSASL 332 (391)
T ss_dssp --HHH-HHHHHHHHHHHHHHHHHHHHTTTTSTTEEECSCTTTSCTTEEEEEETTSCHHHHHHHTTTEECBCCCC------
T ss_pred --hHH-HHHhhHHHHHHHHHHHHHHHHHHhhcCeeecccccccCceEEEEEeCCCChHHHHHHhCCCEEEccccccCCcc
Confidence 111 223445567788889999999999864655422 1 12345555555 7777777754333110 0
Q ss_pred ----------e----cCCeEEEEeccCCCHHHHHHHHHHHhCC
Q 001989 502 ----------V----DSNTVTASFDETTTLEDVDKLFIVFAGG 530 (985)
Q Consensus 502 ----------~----~~~~lris~t~~~t~edId~li~aL~~~ 530 (985)
+ ..+.+|+|++.+||+||||+|+++|++.
T Consensus 333 ~~~~~l~~~g~~~~~~~g~iRiS~~~~nt~edid~l~~~l~~~ 375 (391)
T d1p3wa_ 333 EPSYVLRALGLNDELAHSSIRFSLGRFTTEEEIDYTIELVRKS 375 (391)
T ss_dssp CCCHHHHHHTCCHHHHHTEEEEECCTTCCHHHHHHHHHHHHHH
T ss_pred chhHHHHHcCCCccccCCEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 0 1367999999999999999999999853
|
| >d1qz9a_ c.67.1.3 (A:) Kynureninase {Pseudomonas fluorescens [TaxId: 294]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Kynureninase species: Pseudomonas fluorescens [TaxId: 294]
Probab=99.90 E-value=1.3e-22 Score=231.00 Aligned_cols=312 Identities=13% Similarity=0.097 Sum_probs=211.7
Q ss_pred hhhHHHHHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHH-hh--hhcCCCCEEEEcCCCChhHHHHHHHh-hcC--C
Q 001989 206 AQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMC-NN--IQKGKKKTFIIASNCHPQTIDICITR-ADG--F 279 (985)
Q Consensus 206 sqg~l~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a-~~--~~~~~g~~Vlv~~~~H~s~~~~~~~~-a~~--~ 279 (985)
+..+.+.+.++++.+|+++|+++.++.++.++|.+...++.. .. ..+++++.|++++..|++....+... ++. .
T Consensus 65 ~~~~~~~~e~~R~~iA~llga~~~ei~~~~~~T~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~ 144 (404)
T d1qz9a_ 65 SAGWRDLSERLGNRLATLIGARDGEVVVTDTTSINLFKVLSAALRVQATRSPERRVIVTETSNFPTDLYIAEGLADMLQQ 144 (404)
T ss_dssp HTSGGGHHHHHHHHHHTTTTCCTTSEEECSCHHHHHHHHHHHHHHHHHHHSTTCCEEEEETTSCHHHHHHHHHHHHHHCS
T ss_pred chhHHHHHHHHHHHHHHHhCCCCCcEEEecCchHHHHHHhhhhhhhhcccCCCcEEEEeccccchHHHHHHhhhheeeee
Confidence 445567788899999999999999999999998766554421 11 12247788888888776655554332 221 1
Q ss_pred CeEEEE-eCchhhhc-cCCCEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCC-CCCcccceEEEec
Q 001989 280 DIKVVV-SDLKDIDY-KSGDVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILK-PPGELGADIVVGS 355 (985)
Q Consensus 280 gi~v~~-v~~~~l~~-l~~~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~-~~~~~GaDi~v~s 355 (985)
...... .+.+++++ ++++|++|++++. |.+|.+.|+++|+++||++|++++|++ .+++|... ...++|+|+++++
T Consensus 145 ~~~~~~~~~~~~~~~~i~~~T~lV~i~~v~~~tG~~~pv~~i~~~~~~~~~~~~vD~-~q~~g~~~~~~~~~~~d~~~~s 223 (404)
T d1qz9a_ 145 GYTLRLVDSPEELPQAIDQDTAVVMLTHVNYKTGYMHDMQALTALSHECGALAIWDL-AHSAGAVPVDLHQAGADYAIGC 223 (404)
T ss_dssp SCEEEEESSGGGHHHHCSTTEEEEEEESBCTTTCBBCCHHHHHHHHHHHTCEEEEEC-TTTTTTSCCCHHHHTCSEEEEC
T ss_pred ceeccccccchhHHHhcCCCceEEEEecccccccceecHHHHhccccccccceeEEe-eccccccccccccccceEEEEe
Confidence 122221 23456666 8999999999986 789999999999999999999999953 34566443 3467999999999
Q ss_pred C-ccccccCCCCCCc-EEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHH
Q 001989 356 A-QRFGVPMGYGGPH-AAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAM 433 (985)
Q Consensus 356 ~-k~lg~P~~~GGP~-~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~ 433 (985)
+ |+++ |||| +|++++++++.+.+|+...++........ ............+.+.+|.++ .+...+.+++
T Consensus 224 ~~K~~~-----~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~ 294 (404)
T d1qz9a_ 224 TYKYLN-----GGPGSQAFVWVSPQLCDLVPQPLSGWFGHSRQFA-MEPRYEPSNGIARYLCGTQPI---TSLAMVECGL 294 (404)
T ss_dssp SSSTTC-----CCTTCCCEEEECTTTTTTSCCSCCCGGGBCTTSC-CCSSCCBCSSGGGGCCSCCCH---HHHHHHHHHH
T ss_pred chhhcc-----cCCceEEEEEechhhhhhCCccccccCCcccccc-ccccccccccchhhhhhhccc---hhHHHHHHHH
Confidence 9 6664 3343 58999999998888876666421111000 000111112223445566554 3444444444
Q ss_pred HHHHhCcchHHHHHHHHHHHHHHHHH---HHhcCCCeEEcCCC----CcceEEEecCCHHHHHHHHHHcCceeeeecCCe
Q 001989 434 YAVYHGPEGLKTIAQRVHGLAGTFAL---GLKKLGTVEVQGLP----FFDTVKVKCADAHAIASAAYKIEMNLRVVDSNT 506 (985)
Q Consensus 434 ~l~~~g~~Gl~~i~~~~~~~a~~l~~---~L~~~g~~~~~~~~----~~~~~~~~~~~~~~v~~~L~~~GI~~~~~~~~~ 506 (985)
.++...|+..+.++...+..++.. .+....+++++++. ....++|..+++.++.++|.++||.+....++.
T Consensus 295 --~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~i~~p~~~~~r~~~vsf~~~~~~~v~~~L~~~gi~~~~r~~~~ 372 (404)
T d1qz9a_ 295 --DVFAQTDMASLRRKSLALTDLFIELVEQRCAAHELTLVTPREHAKRGSHVSFEHPEGYAVIQALIDRGVIGDYREPRI 372 (404)
T ss_dssp --HHHTTSCHHHHHHHHHHHHHHHHHHHHHHHTTSCCEECSCSSGGGBCSEEEEECTTHHHHHHHHHTTTEECEEETTTE
T ss_pred --HHHHHhhHHHHHHHHHHhHHHHHHHHHhhccCCCEEEECCCCccceeeEEEEecCCHHHHHHHHHHCCCEEeecCCCe
Confidence 555566777777666666655444 44444338987531 235688888888899999999999775445789
Q ss_pred EEEEec-cCCCHHHHHHHHHHHhC
Q 001989 507 VTASFD-ETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 507 lris~t-~~~t~edId~li~aL~~ 529 (985)
||+|+. .|||.+|||+|+++|++
T Consensus 373 lRiS~~h~ynt~~did~~~~~L~~ 396 (404)
T d1qz9a_ 373 MRFGFTPLYTTFTEVWDAVQILGE 396 (404)
T ss_dssp EEEECCTTTCCHHHHHHHHHHHHH
T ss_pred EEEECCCCCCCHHHHHHHHHHHHH
Confidence 999995 58999999999999974
|
| >d1eg5a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: NifS-like protein/selenocysteine lyase species: Thermotoga maritima [TaxId: 2336]
Probab=99.90 E-value=9.1e-22 Score=222.10 Aligned_cols=309 Identities=15% Similarity=0.148 Sum_probs=202.7
Q ss_pred hhhHHHHHHHHHHHHHHHhCCCccceec-CcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHH---HHHCCc
Q 001989 627 AQGYQEMFNNLGEWLCTITGFDSFSLQP-NAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPAT---AAMCGM 702 (985)
Q Consensus 627 ~~G~~~~~~e~~~~la~l~G~~~~~~~~-~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~---a~~~G~ 702 (985)
++-..+.++++++.+++++|+++..+.. .++++|...++..+.. .. ..++++|+++...|+.+... ++..|+
T Consensus 39 ~~~~~~~~~~aR~~ia~l~~~~~~~i~~~~~~T~~l~~~~~~~~~---~~-~~~g~~v~~~~~~~~~~~~~~~~~~~~g~ 114 (376)
T d1eg5a_ 39 GIEANLHMEKAREKVAKVLGVSPSEIFFTSCATESINWILKTVAE---TF-EKRKRTIITTPIEHKAVLETMKYLSMKGF 114 (376)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSCGGGEEEESCHHHHHHHHHHHHHH---HT-TTTCCEEEECTTSCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCcEEEECCHHHHHHhhhhcccc---cc-cccCcccccccccchhhHHHHHHHHhcCC
Confidence 4556777889999999999999865444 4455554322222211 11 23567788887766655433 456799
Q ss_pred EEEEEcCCCCCCCCHHHHHHHHHhcCCCEEEEEEEcCC-CccccccCHHHHHHHHHHc--CCEEEEEccccccccCCCCC
Q 001989 703 KIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPS-THGVYEEGIDEICKIIHDN--GGQVYMDGANMNAQVGLTSP 779 (985)
Q Consensus 703 ~vv~v~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~pn-~~G~i~~di~eI~~la~~~--galliVD~a~~~~~~~l~~p 779 (985)
+++.+|++++|.+|+++++++|+ ++|++|++++++ .+|.+. |+++++++++.+ |++++||++|..+...+ +.
T Consensus 115 ~v~~vp~~~~~~id~~~l~~~i~---~~t~lv~is~v~~~tG~~~-~~~~i~~~~~~~~~~~~~~vD~~q~~g~~~~-d~ 189 (376)
T d1eg5a_ 115 KVKYVPVDSRGVVKLEELEKLVD---EDTFLVSIMAANNEVGTIQ-PVEDVTRIVKKKNKETLVHVDAVQTIGKIPF-SL 189 (376)
T ss_dssp EEEECCBCTTSCBCHHHHHHHCC---TTEEEEEEESBCTTTCBBC-CHHHHHHHHHHHCTTCEEEEECTTTTTTSCC-CC
T ss_pred EEEEEcCCCCCeECHHHHHHhcC---CCceEEEEECCccccceee-eehhhhhhhhhcccCceeEEEeeeccccccc-cc
Confidence 99999999999999999999998 899999999985 699998 899999998655 99999999997666544 45
Q ss_pred CccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHH
Q 001989 780 GYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTY 859 (985)
Q Consensus 780 g~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~ 859 (985)
.++++|++++++|||+ |++|.|+++++++.. +.+...|++.. .....++.+ ..+.. .+...
T Consensus 190 ~~~~~D~~~~s~~K~~------gp~G~~~l~~~~~~~--~~p~~~g~~~~---~~~~~~~~~----~~~~~----~~~~~ 250 (376)
T d1eg5a_ 190 EKLEVDYASFSAHKFH------GPKGVGITYIRKGVP--IRPLIHGGGQE---RGLRSGTQN----VPGIV----GAARA 250 (376)
T ss_dssp TTTCCSEEEEEGGGGT------SCTTCEEEEECTTSC--CCCSBCSSCTT---TTTBCSCCC----HHHHH----HHHHH
T ss_pred cccCccceecccceee------cCCCceeEEeccCcc--cCCcccCCCCc---ccccCCccc----chhhh----hHHHH
Confidence 6789999999999996 456889999886532 21222222110 000111111 11111 11111
Q ss_pred HHHhcHHHHHHHHHHHHHHHHHHHHHhhccCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCC---
Q 001989 860 IAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPT--- 936 (985)
Q Consensus 860 l~~lg~eGl~~~~~~~~~~a~~l~~~L~~g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~--- 936 (985)
...... ..............++.+.|..................+.+.++ +++++++...|.++||.+++
T Consensus 251 ~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~L~~~gI~vr~G~~ 323 (376)
T d1eg5a_ 251 MEIAVE-ELSEAAKHMEKLRSKLVSGLMNLGAHIITPLEISLPNTLSVSFP------NIRGSTLQNLLSGYGIYVSTSSA 323 (376)
T ss_dssp HHHHHH-THHHHHHHHHHHHHHHHHHHHTTTCEECSCTTSBCTTEEEEECT------TCCHHHHHHHHHHTTEECBC---
T ss_pred hhcccc-chhhhhhhhhhhhhhhccccccccccccccccccccceeeeccC------CCCHHHHHHHHhhCCeEEeCcch
Confidence 222221 22333444555667788887653232222211122223344443 67889999999999997642
Q ss_pred CCCC------------C-----CCEEEEeccCCCCHHHHHHHHccCChhHHHH
Q 001989 937 MSWP------------V-----PGTLMIEPTESESKSWTGIVMLSSPSEKKLH 972 (985)
Q Consensus 937 ~~~p------------~-----~~~lris~t~~~t~eeId~~~~~~~l~~~~~ 972 (985)
+..+ + ++.+|||++.++|+||||+ +++.|++++.
T Consensus 324 c~~~~~~~~~~l~~~gi~~~~~~~~iRiS~~~ynt~edid~--l~~~L~~iv~ 374 (376)
T d1eg5a_ 324 CTSKDERLRHVLDAMGVDRRIAQGAIRISLCKYNTEEEVDY--FLKKIEEILS 374 (376)
T ss_dssp ---------CHHHHTTCCHHHHHHEEEEECCTTCCHHHHHH--HHHHHHHHHH
T ss_pred hcCCccchhHHHHHcCCCcccCCCEEEEecCCCCCHHHHHH--HHHHHHHHHh
Confidence 1111 1 2579999999999999999 8899999876
|
| >d1h0ca_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.89 E-value=1.7e-22 Score=228.93 Aligned_cols=321 Identities=13% Similarity=0.129 Sum_probs=213.0
Q ss_pred hhHHHHHHHHHHHHHHHhCCCcc--ceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHH--HHHCCcE
Q 001989 628 QGYQEMFNNLGEWLCTITGFDSF--SLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPAT--AAMCGMK 703 (985)
Q Consensus 628 ~G~~~~~~e~~~~la~l~G~~~~--~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~--a~~~G~~ 703 (985)
+.+.++++++++.+++++|.+.. .++++||++++++++..+. .+++++++....|..+... +...+..
T Consensus 48 ~~f~~i~~ea~~~l~~llg~~~~~~ii~~gsgT~a~~~~i~~l~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (388)
T d1h0ca_ 48 KDMYQIMDEIKEGIQYVFQTRNPLTLVISGSGHCALEAALVNVL--------EPGDSFLVGANGIWGQRAVDIGERIGAR 119 (388)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCCSEEEEESSCHHHHHHHHHHHHC--------CSSCCEEECBSSHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCcEEEEcCcHHHHHHHHHHHhh--------ccCCceeeecccceeeeecccccccccc
Confidence 45678899999999999999753 3556777877755544331 3677888877655444333 3456777
Q ss_pred EEEEcCCCCCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCcc
Q 001989 704 IVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYI 782 (985)
Q Consensus 704 vv~v~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~ 782 (985)
++.++.++.+.+|.+.+++.+.. +++++|++++. |.+|++. |+++|+++||++|++++||++|+.+...+ +...+
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~n~tG~i~-pi~~i~~~~~~~g~~~~vD~~qs~g~~~~-d~~~~ 195 (388)
T d1h0ca_ 120 VHPMTKDPGGHYTLQEVEEGLAQ--HKPVLLFLTHGESSTGVLQ-PLDGFGELCHRYKCLLLVDSVASLGGTPL-YMDRQ 195 (388)
T ss_dssp CBCCBCCTTCCCCHHHHHHHHHH--HCCSEEEEESEETTTTEEC-CCTTHHHHHHTTTCEEEEECTTTTTTSCC-CTTTT
T ss_pred ccccccCCccccchHHHHHHhcc--CCcceEEEeeeeecccccc-CHHHHHHHhhcccccceeccccccccccc-ccccc
Confidence 77778777888999999888763 46778888875 5799999 89999999999999999999997655443 56788
Q ss_pred CCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccC---CCC-------CCCCCCCCCCCCCCcchhhhHH
Q 001989 783 GADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVST---GGI-------PAPEKSQPLGTIAAAPWGSALI 852 (985)
Q Consensus 783 g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~---~~~-------~~~~~~~~~~~i~s~~~g~~~~ 852 (985)
++|++++++|||++ |.+|+|++++++...+.+.....+.. .+. ........+..... . ..
T Consensus 196 ~~D~~~~s~~K~~~-----gp~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~----~-~~ 265 (388)
T d1h0ca_ 196 GIDILYSGSQKALN-----APPGTSLISFSDKAKKKMYSRKTKPFSFYLDIKWLANFWGCDDQPRMYHHTIP----V-IS 265 (388)
T ss_dssp TCSEEEEESSSTTC-----CCTTCEEEEECHHHHHHHTTCSSCCSCSTTCHHHHHHHTTCSSSCCCCCSCCC----H-HH
T ss_pred ccceeccccccccc-----CCCceEEEeecHHHHHhhhhccccccccccccchhhhhhhhcccccccccccc----H-HH
Confidence 99999999999985 22478899988654332211110000 000 00000001111111 1 11
Q ss_pred HHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHC-
Q 001989 853 LPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDY- 930 (985)
Q Consensus 853 ~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~- 930 (985)
+....+.+..+...|+..+.++..++++++++.+.+ ++.+....+.......+.+.++ .+.+..++.+.|.++
T Consensus 266 ~~~~~~al~~~~~~g~~~~~~~~~~l~~~l~~~~~~~g~~~~~~~~~~rs~~i~~~~~p-----~~~~~~~~~~~L~~~~ 340 (388)
T d1h0ca_ 266 LYSLRESLALIAEQGLENSWRQHREAAAYLHGRLQALGLQLFVKDPALRLPTVTTVAVP-----AGYDWRDIVSYVIDHF 340 (388)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTCCBSSCSGGGBCTTEEEEECC-----TTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccccccccchhHHHHHHHhhcCcccccCCHHHcCCeEEEEECC-----CCCCHHHHHHHHHhcC
Confidence 222234455555566777777888889999999986 5554332211111123455554 367899999998765
Q ss_pred CCccCCCCCC-CCCEEEEe-ccCCCCHHHHHHHHccCChhHHHHhhccC
Q 001989 931 GFHGPTMSWP-VPGTLMIE-PTESESKSWTGIVMLSSPSEKKLHRLKMG 977 (985)
Q Consensus 931 Gi~~~~~~~p-~~~~lris-~t~~~t~eeId~~~~~~~l~~~~~~~~~~ 977 (985)
||.+..-..+ -.+.+||+ +..++|+||||+ ++++|++++++++..
T Consensus 341 gI~v~~G~~~~~~~~iRis~~g~~~t~edid~--li~aL~~~L~~l~k~ 387 (388)
T d1h0ca_ 341 DIEIMGGLGPSTGKVLRIGLLGCNATRENVDR--VTEALRAALQHCPKK 387 (388)
T ss_dssp CEECEECCGGGTTTEEEEECCGGGCSHHHHHH--HHHHHHHHHHHSCCC
T ss_pred CEEEeCCchhhcCCEEEEeCCCCCCCHHHHHH--HHHHHHHHHHHhccc
Confidence 8876421111 14689999 778999999999 889999999998865
|
| >d1qz9a_ c.67.1.3 (A:) Kynureninase {Pseudomonas fluorescens [TaxId: 294]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Kynureninase species: Pseudomonas fluorescens [TaxId: 294]
Probab=99.88 E-value=2.2e-22 Score=229.24 Aligned_cols=317 Identities=17% Similarity=0.109 Sum_probs=192.5
Q ss_pred HHHHHHHHHHHHHHHhCCCccc-eecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEc
Q 001989 630 YQEMFNNLGEWLCTITGFDSFS-LQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVG 708 (985)
Q Consensus 630 ~~~~~~e~~~~la~l~G~~~~~-~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~ 708 (985)
+.+.++++++.+++++|++... +++.+++++....+.......... .+++.||+++..|..........+.++..++
T Consensus 68 ~~~~~e~~R~~iA~llga~~~ei~~~~~~T~~~~~~~~~~~~~~~~~--~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~ 145 (404)
T d1qz9a_ 68 WRDLSERLGNRLATLIGARDGEVVVTDTTSINLFKVLSAALRVQATR--SPERRVIVTETSNFPTDLYIAEGLADMLQQG 145 (404)
T ss_dssp GGGHHHHHHHHHHTTTTCCTTSEEECSCHHHHHHHHHHHHHHHHHHH--STTCCEEEEETTSCHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHHHHHhCCCCCcEEEecCchHHHHHHhhhhhhhhccc--CCCcEEEEeccccchHHHHHHhhhheeeeec
Confidence 3467788999999999999855 344555655432222111111111 3556777776656544333332233333334
Q ss_pred CCCCCCCCHHHHHHHHHhcCCCEEEEEEEcCC-CccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCccCCcEE
Q 001989 709 TDAKGNINIEELRKAAEANRDNLSTLMVTYPS-THGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIGADVC 787 (985)
Q Consensus 709 ~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~pn-~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~g~Di~ 787 (985)
.+.++..++++++++|+ ++|++|++++.+ .+|.+. |+++|+++||++|++++||++|..+...+ +...+++|++
T Consensus 146 ~~~~~~~~~~~~~~~i~---~~T~lV~i~~v~~~tG~~~-pv~~i~~~~~~~~~~~~vD~~q~~g~~~~-~~~~~~~d~~ 220 (404)
T d1qz9a_ 146 YTLRLVDSPEELPQAID---QDTAVVMLTHVNYKTGYMH-DMQALTALSHECGALAIWDLAHSAGAVPV-DLHQAGADYA 220 (404)
T ss_dssp CEEEEESSGGGHHHHCS---TTEEEEEEESBCTTTCBBC-CHHHHHHHHHHHTCEEEEECTTTTTTSCC-CHHHHTCSEE
T ss_pred eeccccccchhHHHhcC---CCceEEEEeccccccccee-cHHHHhccccccccceeEEeecccccccc-ccccccceEE
Confidence 44446678899999998 999999999975 699999 89999999999999999999997665543 4567799999
Q ss_pred EeCCcccccccCCCCCCc-eEEEEEcccccCcCCCCccccCC--CC----CCCCCCCC----CCCCCCcchhhhHHHHHH
Q 001989 788 HLNLHKTFCIPHGGGGPG-MGPIGVKKHLAPFLPSHPVVSTG--GI----PAPEKSQP----LGTIAAAPWGSALILPIS 856 (985)
Q Consensus 788 ~~s~hK~l~~p~g~GGPg-~G~i~~~~~l~~~lp~~~~g~~~--~~----~~~~~~~~----~~~i~s~~~g~~~~~~~a 856 (985)
++++|||++ +||| +|+++.++.+.+.++....++.+ .. ........ ..... ... .......+
T Consensus 221 ~~s~~K~~~-----~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~ 293 (404)
T d1qz9a_ 221 IGCTYKYLN-----GGPGSQAFVWVSPQLCDLVPQPLSGWFGHSRQFAMEPRYEPSNGIARYLCGTQ-PIT-SLAMVECG 293 (404)
T ss_dssp EECSSSTTC-----CCTTCCCEEEECTTTTTTSCCSCCCGGGBCTTSCCCSSCCBCSSGGGGCCSCC-CHH-HHHHHHHH
T ss_pred EEechhhcc-----cCCceEEEEEechhhhhhCCccccccCCccccccccccccccccchhhhhhhc-cch-hHHHHHHH
Confidence 999999985 4564 68888888777666543322211 00 00000000 00111 001 11122223
Q ss_pred HHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc--cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCcc
Q 001989 857 YTYIAMMGSKGLTEASKIAILNANYMAKRLEK--HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHG 934 (985)
Q Consensus 857 ~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~--g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~ 934 (985)
..++..++.+.+++...........+.+.+.. ++.++ ++..+.....++.+. ..++.++.++|.++||.+
T Consensus 294 ~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~i~--~p~~~~~r~~~vsf~------~~~~~~v~~~L~~~gi~~ 365 (404)
T d1qz9a_ 294 LDVFAQTDMASLRRKSLALTDLFIELVEQRCAAHELTLV--TPREHAKRGSHVSFE------HPEGYAVIQALIDRGVIG 365 (404)
T ss_dssp HHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHTTSCCEEC--SCSSGGGBCSEEEEE------CTTHHHHHHHHHTTTEEC
T ss_pred HHHHHHhhHHHHHHHHHHhHHHHHHHHHhhccCCCEEEE--CCCCccceeeEEEEe------cCCHHHHHHHHHHCCCEE
Confidence 34444455554444333333333334444433 33332 222211111223333 125889999999999976
Q ss_pred CCCCCCCCCEEEEecc-CCCCHHHHHHHHccCChhHHHHh
Q 001989 935 PTMSWPVPGTLMIEPT-ESESKSWTGIVMLSSPSEKKLHR 973 (985)
Q Consensus 935 ~~~~~p~~~~lris~t-~~~t~eeId~~~~~~~l~~~~~~ 973 (985)
... .++.||||+. .+||.+|||+ +++.|++++++
T Consensus 366 ~~r---~~~~lRiS~~h~ynt~~did~--~~~~L~~vl~~ 400 (404)
T d1qz9a_ 366 DYR---EPRIMRFGFTPLYTTFTEVWD--AVQILGEILDR 400 (404)
T ss_dssp EEE---TTTEEEEECCTTTCCHHHHHH--HHHHHHHHHHH
T ss_pred eec---CCCeEEEECCCCCCCHHHHHH--HHHHHHHHHHh
Confidence 322 2489999996 5899999999 88999999875
|
| >d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.88 E-value=1e-21 Score=226.81 Aligned_cols=345 Identities=15% Similarity=0.152 Sum_probs=226.5
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhcCCC-ccceecCCCCCCCCCcHHHHHHHHh----CCccccccCCChhhHhhhHHHHHH
Q 001989 140 KFSKFDEGLTESQMIEHMQKLASMNK-VYKSFIGMGYYNTHVPPVILRNIME----NPAWYTQYTPYQAEIAQGRLESLL 214 (985)
Q Consensus 140 ~lp~~~~~~se~e~~~~~~~l~~~n~-~~~~~lG~g~y~~~~p~~v~~~i~~----~~~~~t~~~pyq~e~sqg~l~~i~ 214 (985)
.|| +.+++|.++++++.+++.++. .+.++.|.|.+++.++..+...... ..+.+..++|+||+.++++++...
T Consensus 18 ~lP--~~G~~~~~i~~~l~~~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 95 (445)
T d3bc8a1 18 KCP--EDGWDESTLELFLHELAVMDSNNFLGNCGVGEREGRVASALVARRHYRFIHGIGRSGDISAVQPKAAGSSLLNKI 95 (445)
T ss_dssp CCC--SSCCCHHHHHHHHHHHHHTBGGGCTTCCCCSSCCCCCSCHHHHHHTTTCCSCBCC-------CCSBHHHHHHHHH
T ss_pred CCC--cCCCCHHHHHHHHHHHHhccCCcccCcccccccCccccHHHHHHHHHhhccccccCcchhhhhhhhccchHHHHH
Confidence 567 578999999999999998764 3667888998887765544322211 112244557889998888766555
Q ss_pred H--HHHHHHHhcCCCC-cceeeccchHHHHH-HHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeC---
Q 001989 215 N--FQTMIADLTGLPM-SNASLLDEGTAAAE-AMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSD--- 287 (985)
Q Consensus 215 e--~q~~ia~L~g~~~-~~~sl~~~~ta~~e-a~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~--- 287 (985)
| ...++++++|++. +...+++++|.... +++++++..+.++++||+|+..|+++.++++. .|++.+.++
T Consensus 96 e~~~~~~~~~l~g~~~~~~~~~~~~~t~~~~~~~l~a~~~~~~~~~~vi~~~~~H~s~~~a~~~----~g~~~~~v~~~~ 171 (445)
T d3bc8a1 96 TNSLVLNVIKLAGVHSVASCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSMVT----AGFEPVVIENVL 171 (445)
T ss_dssp HHHHHHHHHHHHTCTTCCEEEEESSCHHHHHHHHHHHHHHHCTTCCEEEEECCCCHHHHHHHHH----TTCEEEEECCEE
T ss_pred HHHHHHHHHHHhCCCcccCccccccchHHHHHHHHHHHHHhCCCCCEEEEcCcccHHHHHHHHH----cCCeeEEEEeec
Confidence 4 5589999999986 45666777775433 44445543334678999999999999999864 466666653
Q ss_pred --------chhhhc-c----CCCEeEEEEEcCC-CCeeeccHHHHHHHHHhCCcEEEEEecCccccCC--CCC----Ccc
Q 001989 288 --------LKDIDY-K----SGDVCGVLVQYPG-TEGEVLDYGDFIKNAHANGVKVVMATDLLALTIL--KPP----GEL 347 (985)
Q Consensus 288 --------~~~l~~-l----~~~t~~V~v~~pn-~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l--~~~----~~~ 347 (985)
+++|++ + +++|++|++++|+ ++|.++|+++|+++||++|++++||+ .++.+.. ..+ ..+
T Consensus 172 ~~~~~~id~~~l~~~i~~~~~~~~~~v~~~~~~~~~G~~~~~~~i~~~~~~~~~~l~vD~-a~~~~~~~~~~~~~~~~~~ 250 (445)
T d3bc8a1 172 EGDELRTDLKAVEAKIQELGPEHILCLHSTTACFAPRVPDRLEELAVICANYDIPHVVNN-AYGLQSSKCMHLIQQGARV 250 (445)
T ss_dssp ETTEEECCHHHHHHHHHHHCGGGEEEEEEESSCCTTBCCCCHHHHHHHHHHHTCCEEEEC-TTTTTCHHHHHHHHHHHHH
T ss_pred cCcccccCHHHHHHHHHhccccCeEEEEEeCCCCCCeeehhHHHHHHHHHHhCCcEEEEc-cchhhhhhccccchhccCc
Confidence 245554 3 4579999999985 58999999999999999999999953 2333221 111 223
Q ss_pred -cceEEEecC-ccccccCCCCCCcEEEEEEch-hhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchh
Q 001989 348 -GADIVVGSA-QRFGVPMGYGGPHAAFLATSQ-EYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQ 424 (985)
Q Consensus 348 -GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~-~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~ 424 (985)
++|++++++ |++++|.+ .|++++++ .+.+.++....| +..+ .
T Consensus 251 ~~vd~~~~s~hK~~~~p~g-----~~~l~~~~~~~~~~~~~~~~~-----------------------~~~~-------~ 295 (445)
T d3bc8a1 251 GRIDAFVQSLDKNFMVPVG-----GAIIAGFNEPFIQDISKMYPG-----------------------RASA-------S 295 (445)
T ss_dssp SCCCEEEEEHHHHHSCCSS-----CEEEEESCHHHHHHHHHHSCS-----------------------CBCS-------H
T ss_pred CCcceEEecCccccccCCC-----CceeeeCChHHHHHHHHHHhh-----------------------cccC-------c
Confidence 499999999 66876642 46777765 343333111000 0000 1
Q ss_pred HHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcC----CCeEEcCCCC-cce--EEEec----CC--HHHHHHH
Q 001989 425 ALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKL----GTVEVQGLPF-FDT--VKVKC----AD--AHAIASA 491 (985)
Q Consensus 425 ~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~----g~~~~~~~~~-~~~--~~~~~----~~--~~~v~~~ 491 (985)
..+... +++..++.+|++++.++..++++|+++.|.++ | ..+...+. ... +.+.. .. ..++...
T Consensus 296 ~~~~~~--~~~~~~g~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~-~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~ 372 (445)
T d3bc8a1 296 PSLDVL--ITLLSLGCSGYRKLLKERKEMFVYLSTQLKKLAEAHN-ERLLQTPHNPISLAMTLKTIDGHHDKAVTQLGSM 372 (445)
T ss_dssp HHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CCBCCCTTCSSEEEEECTTTSSSSSCHHHHHHHH
T ss_pred chHHHH--HHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHHhhcC-ceeecCCCCCcceEEEeeeccccCCCCHHHHHHH
Confidence 222222 23467788999999999999999999998764 4 45543221 112 22221 11 6778888
Q ss_pred HHHcCceeee------------------------ecCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 492 AYKIEMNLRV------------------------VDSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 492 L~~~GI~~~~------------------------~~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
|.+.||.... .....+|++++..+|+||||+|+++|.+
T Consensus 373 L~~~gI~~~~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~i~i~~~~~~T~eDID~~v~~L~k 434 (445)
T d3bc8a1 373 LFTRQVSGARAVPLGNVQTVSGHTFRGFMSHADNYPCAYLNAAAAIGMKMQDVDLFIKRLDK 434 (445)
T ss_dssp HHHTTCCSCEEECSCCEEEETTEEEETTTTTSSCCSSCEEEEECCTTCCHHHHHHHHHHHHH
T ss_pred HHHcCCCcceeeccccccchhhhhhhhcCCCCccCCCCeEEEeCcCCCCHHHHHHHHHHHHH
Confidence 9998884210 0124599999999999999999999985
|
| >d1h0ca_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.87 E-value=1.3e-21 Score=221.53 Aligned_cols=324 Identities=14% Similarity=0.147 Sum_probs=227.6
Q ss_pred cCCCCCCCCCcHHHHHHHHhCCccccccCCChhhHhhhHHHHHHHHHHHHHHhcCCCCc-ceeeccchHHHHHHHHHHhh
Q 001989 171 IGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMS-NASLLDEGTAAAEAMAMCNN 249 (985)
Q Consensus 171 lG~g~y~~~~p~~v~~~i~~~~~~~t~~~pyq~e~sqg~l~~i~e~q~~ia~L~g~~~~-~~sl~~~~ta~~ea~~~a~~ 249 (985)
++.| |..+|+.|.+ ..+++.. +- .++.-.+.+.++++.+++|+|.+.. .+.+..|||.+++++..++.
T Consensus 23 ~~pG--P~~~~~~Vl~-am~~~~i----~H----Rs~~f~~i~~ea~~~l~~llg~~~~~~ii~~gsgT~a~~~~i~~l~ 91 (388)
T d1h0ca_ 23 LGPG--PSNLPPRIMA-AGGLQMI----GS----MSKDMYQIMDEIKEGIQYVFQTRNPLTLVISGSGHCALEAALVNVL 91 (388)
T ss_dssp CSSS--CCCCCHHHHH-HHTCCCC----CT----TSHHHHHHHHHHHHHHHHHHTCCCSEEEEESSCHHHHHHHHHHHHC
T ss_pred ccCC--CCCCCHHHHH-HhCcCCC----CC----CCHHHHHHHHHHHHHHHHHhCCCCCcEEEEcCcHHHHHHHHHHHhh
Confidence 4777 5668888864 3444432 11 2445568899999999999999755 46677888999888887652
Q ss_pred hhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc--------hhhhc--cCCCEeEEEEEc-CCCCeeeccHHHH
Q 001989 250 IQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL--------KDIDY--KSGDVCGVLVQY-PGTEGEVLDYGDF 318 (985)
Q Consensus 250 ~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~--------~~l~~--l~~~t~~V~v~~-pn~~G~v~di~~I 318 (985)
.+++++++....|.+........ ..+..+..+.. ++++. .++++++|++++ +|.+|.+.|+++|
T Consensus 92 ---~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~n~tG~i~pi~~i 166 (388)
T d1h0ca_ 92 ---EPGDSFLVGANGIWGQRAVDIGE--RIGARVHPMTKDPGGHYTLQEVEEGLAQHKPVLLFLTHGESSTGVLQPLDGF 166 (388)
T ss_dssp ---CSSCCEEECBSSHHHHHHHHHHH--HHC--CBCCBCCTTCCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCTTH
T ss_pred ---ccCCceeeecccceeeeeccccc--cccccccccccCCccccchHHHHHHhccCCcceEEEeeeeeccccccCHHHH
Confidence 37899999999998876665432 23333333322 22322 355788898887 5899999999999
Q ss_pred HHHHHhCCcEEEEEecCccccCC-CCCCcccceEEEecC-ccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCC
Q 001989 319 IKNAHANGVKVVMATDLLALTIL-KPPGELGADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSG 396 (985)
Q Consensus 319 ~~~a~~~galliV~a~~~~lg~l-~~~~~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g 396 (985)
+++||++|++++||+ ..++|.. .+..++|+|++++++ |++++| +|+|+++++++.++.+.....++.
T Consensus 167 ~~~~~~~g~~~~vD~-~qs~g~~~~d~~~~~~D~~~~s~~K~~~gp-----~g~~~~~~~~~~~~~~~~~~~~~~----- 235 (388)
T d1h0ca_ 167 GELCHRYKCLLLVDS-VASLGGTPLYMDRQGIDILYSGSQKALNAP-----PGTSLISFSDKAKKKMYSRKTKPF----- 235 (388)
T ss_dssp HHHHHTTTCEEEEEC-TTTTTTSCCCTTTTTCSEEEEESSSTTCCC-----TTCEEEEECHHHHHHHTTCSSCCS-----
T ss_pred HHHhhcccccceecc-ccccccccccccccccceecccccccccCC-----CceEEEeecHHHHHhhhhcccccc-----
Confidence 999999999999954 4566644 356889999999999 666544 457899999988877654433321
Q ss_pred Ccceeeec------ccccccccccccCCCccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEc
Q 001989 397 KPALRVAM------QTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQ 470 (985)
Q Consensus 397 ~~~~~l~l------~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~ 470 (985)
.+.++. .......+.+.+|+++ ..+.++.+++ .++...|++.+.++..++++++++.+.+.| +.++
T Consensus 236 --~~~~~~~~~~~~~~~~~~~~~~~~t~~~---~~~~~~~~al--~~~~~~g~~~~~~~~~~l~~~l~~~~~~~g-~~~~ 307 (388)
T d1h0ca_ 236 --SFYLDIKWLANFWGCDDQPRMYHHTIPV---ISLYSLRESL--ALIAEQGLENSWRQHREAAAYLHGRLQALG-LQLF 307 (388)
T ss_dssp --CSTTCHHHHHHHTTCSSSCCCCCSCCCH---HHHHHHHHHH--HHHHHHCHHHHHHHHHHHHHHHHHHHHHHT-CCBS
T ss_pred --ccccccchhhhhhhhccccccccccccH---HHHHHHHHHH--HHHHHhccccccccccchhHHHHHHHhhcC-cccc
Confidence 111111 1122333445566665 5666666666 445567899999999999999999999987 6654
Q ss_pred -CCC--Cc-ceEEEecCC---HHHHHHHHHHc-Cceeee----ecCCeEEEE-eccCCCHHHHHHHHHHHhC
Q 001989 471 -GLP--FF-DTVKVKCAD---AHAIASAAYKI-EMNLRV----VDSNTVTAS-FDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 471 -~~~--~~-~~~~~~~~~---~~~v~~~L~~~-GI~~~~----~~~~~lris-~t~~~t~edId~li~aL~~ 529 (985)
.++ .. ..++|.+++ +.++.+.|.++ ||.++. ..++.+|+| +++++|+||||+++++|++
T Consensus 308 ~~~~~~rs~~i~~~~~p~~~~~~~~~~~L~~~~gI~v~~G~~~~~~~~iRis~~g~~~t~edid~li~aL~~ 379 (388)
T d1h0ca_ 308 VKDPALRLPTVTTVAVPAGYDWRDIVSYVIDHFDIEIMGGLGPSTGKVLRIGLLGCNATRENVDRVTEALRA 379 (388)
T ss_dssp SCSGGGBCTTEEEEECCTTCCHHHHHHHHHHHHCEECEECCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHH
T ss_pred cCCHHHcCCeEEEEECCCCCCHHHHHHHHHhcCCEEEeCCchhhcCCEEEEeCCCCCCCHHHHHHHHHHHHH
Confidence 222 22 245677753 88999998765 998753 235789999 7899999999999999985
|
| >d1m32a_ c.67.1.3 (A:) 2-aminoethylphosphonate transaminase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: 2-aminoethylphosphonate transaminase species: Salmonella typhimurium [TaxId: 90371]
Probab=99.87 E-value=1e-20 Score=211.78 Aligned_cols=328 Identities=13% Similarity=0.071 Sum_probs=218.9
Q ss_pred ecCCCCCCCCCcHHHHHHHHhCCccccccCCChhhHhhhHHHHHHHHHHHHHHhcCCCCcc--eeeccchHHHHHHHHHH
Q 001989 170 FIGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMSN--ASLLDEGTAAAEAMAMC 247 (985)
Q Consensus 170 ~lG~g~y~~~~p~~v~~~i~~~~~~~t~~~pyq~e~sqg~l~~i~e~q~~ia~L~g~~~~~--~sl~~~~ta~~ea~~~a 247 (985)
+.|.| |..+|+.|.+++ ..+ +. +.++ +...+.+.++++.+++|+|++..+ +.+..|+|.++++++.+
T Consensus 3 l~~pG--P~~~~~~V~~A~-~~~-~~---~~~~----~~~~~~~~~~r~~l~~l~~~~~~~~~i~~t~s~T~~~~~~~~~ 71 (361)
T d1m32a_ 3 LLTPG--PLTTSRTVKEAM-LFD-SC---TWDD----DYNIGVVEQIRQQLTALATASEGYTSVLLQGSGSYAVEAVLGS 71 (361)
T ss_dssp ECSSS--SCCCCHHHHHTT-CCC-CC---TTSH----HHHTTTHHHHHHHHHHHHCSSSSEEEEEEESCHHHHHHHHHHH
T ss_pred cccCC--CCCCCHHHHHHh-hhh-cc---CCCc----HHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCHHHHHHHHHHH
Confidence 35777 667888886443 222 11 3333 334567788999999999998775 44556788888877765
Q ss_pred hhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCch--------hhhc-cCCCEeEEEEEcC-CCCeeeccHHH
Q 001989 248 NNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDLK--------DIDY-KSGDVCGVLVQYP-GTEGEVLDYGD 317 (985)
Q Consensus 248 ~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~~--------~l~~-l~~~t~~V~v~~p-n~~G~v~di~~ 317 (985)
+.. ++++.++++...|+.....+.... .....+...+.. .... .+++++.|.+++. |.+|.+.|+++
T Consensus 72 l~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~tG~~~~i~~ 148 (361)
T d1m32a_ 72 ALG--PQDKVLIVSNGAYGARMVEMAGLM-GIAHHAYDCGEVARPDVQAIDAILNADPTISHIAMVHSETTTGMLNPIDE 148 (361)
T ss_dssp SCC--TTCCEEEEESSHHHHHHHHHHHHH-TCCEEEEECCTTSCCCHHHHHHHHHHCTTCCEEEEESEETTTTEECCHHH
T ss_pred hhh--hccccceeeehhhhhhHHHHhhhh-hcccccccccccCCccchhhHHHHHhccCccceEEEeeecccccchhhhh
Confidence 432 244555666666666655554332 333444333221 1122 5788999999875 78999999999
Q ss_pred HHHHHHhCCcEEEEEecCccccCCC-CCCcccceEEEecC-ccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCC
Q 001989 318 FIKNAHANGVKVVMATDLLALTILK-PPGELGADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSS 395 (985)
Q Consensus 318 I~~~a~~~galliV~a~~~~lg~l~-~~~~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~ 395 (985)
|+++||++|++++||+ ..++|... +..++|+|++++++ |+|++| ||+|+++++++..+++++...|+...
T Consensus 149 i~~~~~~~g~~~~vDa-~qs~G~~~~d~~~~~~D~~~~s~~K~l~gp-----~G~g~l~~~~~~~~~~~~~~~~~~~~-- 220 (361)
T d1m32a_ 149 VGALAHRYGKTYIVDA-MSSFGGIPMDIAALHIDYLISSANKCIQGV-----PGFAFVIAREQKLAACKGHSRSLSLD-- 220 (361)
T ss_dssp HHHHHHHHTCEEEEEC-TTTTTTSCCCTTTTTCSEEEEESSSTTCCC-----SSEEEEEEEHHHHTTCTTCCSCSTTC--
T ss_pred hhhhhcccceeeEeec-ccccCcccccccccccceEEeeecccccCC-----CCceEEEechhhhhhhcccccccccc--
Confidence 9999999999999964 45666553 56889999999999 656433 57999999999999988877664211
Q ss_pred CCcceeeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcc-hHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCC-
Q 001989 396 GKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPE-GLKTIAQRVHGLAGTFALGLKKLGTVEVQGLP- 473 (985)
Q Consensus 396 g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~-Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~- 473 (985)
. .......+...+...+|.++ ....++..++ .+...+ +.+...++...+++++++.+++.| +.+..++
T Consensus 221 --~--~~~~~~~~~~~~~~~~t~~~---~~~~~~~~~l--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~~~~~ 290 (361)
T d1m32a_ 221 --L--YAQWRCMEDNHGKWRFTSPT---HTVLAFAQAL--KELAKEGGVAARHQRYQQNQRSLVAGMRALG-FNTLLDDE 290 (361)
T ss_dssp --H--HHHHHHHHHTTTCCSSCCCH---HHHHHHHHHH--HHHHHHTHHHHHHHHHHHHHHHHHHHHHHTT-CCBSSCGG
T ss_pred --c--hhhhccccccccccCCCCCc---hhhhHHHHHH--HHHHHhcchhhhHHHHHHHHHHHHHHHhhcC-CcccCChh
Confidence 0 00000011222334455555 3344444444 222234 456777888999999999999987 6665332
Q ss_pred -Ccc-eEEEecCC-----HHHHHHHHHHcCceeee---ecCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 474 -FFD-TVKVKCAD-----AHAIASAAYKIEMNLRV---VDSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 474 -~~~-~~~~~~~~-----~~~v~~~L~~~GI~~~~---~~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
..+ .++|..+. ..++.+.|.++||.+.. ..++.+|+|...++|++|||+|+++|++
T Consensus 291 ~rs~~v~~~~~p~~~~~~~~~~~~~l~~~gi~i~~G~~~~~~~~Ris~~g~~~~~di~~lv~al~~ 356 (361)
T d1m32a_ 291 LHSPIITAFYSPEDPQYRFSEFYRRLKEQGFVIYPGKVSQSDCFRIGNIGEVYAADITALLTAIRT 356 (361)
T ss_dssp GBCSSEEEEECCCCTTCCHHHHHHHHHHTTEECEECCCSSSCEEEEECCSSCCHHHHHHHHHHHHH
T ss_pred hcCCcEEEEECCCCCCCCHHHHHHHHHHCCcEEECCCcCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 222 34566542 78899999999998753 2367899997668999999999999974
|
| >d2bwna1 c.67.1.4 (A:2-397) 5-aminolevulinate synthase {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 5-aminolevulinate synthase species: Rhodobacter capsulatus [TaxId: 1061]
Probab=99.87 E-value=6.8e-22 Score=222.89 Aligned_cols=315 Identities=14% Similarity=0.121 Sum_probs=218.7
Q ss_pred ccceecCCCCCCCCCcHHHHHHHHhCCccccccCCChhhHhhhHHHHHHHHHHHHHHhcCCCCcceeeccchHHHHHHHH
Q 001989 166 VYKSFIGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMA 245 (985)
Q Consensus 166 ~~~~~lG~g~y~~~~p~~v~~~i~~~~~~~t~~~pyq~e~sqg~l~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~ 245 (985)
+.++|||...+|..+.+.+. ++. + |.+ +...++...|+.+.+.++|+.+|+++|.+. +.++++|..+..+++
T Consensus 51 sSndYLGL~~~p~v~~a~~~-al~-~--yG~--gs~~Sr~~~G~~~~h~~LE~~lA~~~g~e~--all~~sG~~An~~~i 122 (396)
T d2bwna1 51 CGNDYLGMGQHPVVLAAMHE-ALE-A--VGA--GSGGTRNISGTTAYHRRLEAEIAGLHQKEA--ALVFSSAYNANDATL 122 (396)
T ss_dssp SCSCTTSGGGCHHHHHHHHH-HHH-H--HCS--CCCSBTTTBCCBHHHHHHHHHHHHHTTCSE--EEEESCHHHHHHHHH
T ss_pred EcccccCcCCCHHHHHHHHH-HHH-H--hCC--CccccccccCCchHHHHHHHHHHHHhCCCc--eeeeecchHHHHHHH
Confidence 45789999976554444443 332 2 333 445778889999999999999999999987 778888887777766
Q ss_pred HHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCchhhhc----cCCC-EeEEEEEcC-CCCeeeccHHHHH
Q 001989 246 MCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDLKDIDY----KSGD-VCGVLVQYP-GTEGEVLDYGDFI 319 (985)
Q Consensus 246 ~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~~~l~~----l~~~-t~~V~v~~p-n~~G~v~di~~I~ 319 (985)
-++.. .++++.|+.++..|.++.+.++. .+..-..+.+.|++++++ ..++ .+.|++... ++.|.+.|+++|.
T Consensus 123 ~~l~~-~~~~d~i~~D~~~Hasi~~g~~l-s~a~~~~f~Hnd~~~l~~l~~~~~~~~~~~iv~egvySmdGd~apl~~l~ 200 (396)
T d2bwna1 123 STLRV-LFPGLIIYSDSLNHASMIEGIKR-NAGPKRIFRHNDVAHLRELIAADDPAAPKLIAFESVYSMDGDFGPIKEIC 200 (396)
T ss_dssp HHHHH-HSTTCEEEEETTCCHHHHHHHHH-SCCCEEEECTTCHHHHHHHHHHSCTTSCEEEEEESBCTTTCCBCCHHHHH
T ss_pred HHHhc-ccCCCceeehhhhhhccchhhhc-cccCceEeecchHHHhhhHHhhhcccCceeEEEEeeccCcccccccHhHH
Confidence 55432 13778999999999999999863 222222233345555554 2333 344444443 7899999999999
Q ss_pred HHHHhCCcEEEEEecCccccCCCCCCc-----c----cceEEEecC-ccccccCCCCCCcEEEEEEchhhHhcCCCceee
Q 001989 320 KNAHANGVKVVMATDLLALTILKPPGE-----L----GADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVG 389 (985)
Q Consensus 320 ~~a~~~galliV~a~~~~lg~l~~~~~-----~----GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG 389 (985)
++++++|+.++| ++.+++|++.+-|. + .+||++++. |.||. .| ||++++++.++.+.
T Consensus 201 ~L~~~y~~~L~v-DeAHs~Gv~G~~G~G~~~~~~~~~~~di~~gTlsKa~g~---~G----g~v~~~~~~i~~l~----- 267 (396)
T d2bwna1 201 DIAEEFGALTYI-DEVHAVGMYGPRGAGVAERDGLMHRIDIFNGTLAKAYGV---FG----GYIAASARMVDAVR----- 267 (396)
T ss_dssp HHHHHHTCEEEE-ECTTTTTTSSTTSCCHHHHHTCGGGCSEEEEESSSTTCS---CC----EEEEECHHHHHHHH-----
T ss_pred HHhhhhcceeee-ccceeeeeeccccccchhhcCCceeeeeeeecccccccc---cc----cccchhHHHHHHHH-----
Confidence 999999999999 46889998865442 2 369999997 98864 22 69999988777651
Q ss_pred eeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHH--HHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCe
Q 001989 390 VSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMY--AVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTV 467 (985)
Q Consensus 390 ~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~--l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~ 467 (985)
..+.+.|+|++..++.++++. +..+..+..+++.++...+++++++.|.+.| +
T Consensus 268 ------------------------~~~~~~ifStalpp~~~aa~~~al~i~~~~~~~~~r~~l~~~~~~~~~~l~~~g-~ 322 (396)
T d2bwna1 268 ------------------------SYAPGFIFSTSLPPAIAAGAQASIAFLKTAEGQKLRDAQQMHAKVLKMRLKALG-M 322 (396)
T ss_dssp ------------------------HHCHHHHTSBCCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHT-C
T ss_pred ------------------------hhcchhhhcccCcHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhcC-C
Confidence 122233444433333333331 2444444445667788899999999999988 7
Q ss_pred EEcCCCCcceEEEecCC---HHHHHHHHH-HcCceeeeec-------CCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 468 EVQGLPFFDTVKVKCAD---AHAIASAAY-KIEMNLRVVD-------SNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 468 ~~~~~~~~~~~~~~~~~---~~~v~~~L~-~~GI~~~~~~-------~~~lris~t~~~t~edId~li~aL~~ 529 (985)
.+.+. ..+.+.+.+.+ +.+++++|. ++||++..+. ...+|++++..||+||||+++++|.+
T Consensus 323 ~~~~~-~spIvpv~ig~~~~~~~~a~~lL~e~Gi~v~~i~~PtVp~g~~rlRi~lsa~ht~edId~l~~~L~~ 394 (396)
T d2bwna1 323 PIIDH-GSHIVPVVIGDPVHTKAVSDMLLSDYGVYVQPINFPTVPRGTERLRFTPSPVHDLKQIDGLVHAMDL 394 (396)
T ss_dssp CBCCC-SSSCEEEECCCHHHHHHHHHHHHHHHCEECCEECTTTSCTTCCEEEECCCTTSCHHHHHHHHHHHHH
T ss_pred CcCCC-CCCEEEEEeCCHHHHHHHHHHHHHhCCEEEEEECCCcCCCCCeeEEEEeCccCCHHHHHHHHHHHHH
Confidence 76542 22334444443 778888855 6899875541 25799999999999999999999863
|
| >d1eg5a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: NifS-like protein/selenocysteine lyase species: Thermotoga maritima [TaxId: 2336]
Probab=99.87 E-value=2.6e-20 Score=209.99 Aligned_cols=292 Identities=15% Similarity=0.131 Sum_probs=208.2
Q ss_pred HhhhHHHHHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhh-hcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEE
Q 001989 205 IAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNI-QKGKKKTFIIASNCHPQTIDICITRADGFDIKV 283 (985)
Q Consensus 205 ~sqg~l~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~-~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v 283 (985)
.++-..+.+.++++.+|+++|+++.++.+.+|+|.++..++.+... ...+++.|+++...|++....++. ++..|+++
T Consensus 38 ~~~~~~~~~~~aR~~ia~l~~~~~~~i~~~~~~T~~l~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~-~~~~g~~v 116 (376)
T d1eg5a_ 38 MGIEANLHMEKAREKVAKVLGVSPSEIFFTSCATESINWILKTVAETFEKRKRTIITTPIEHKAVLETMKY-LSMKGFKV 116 (376)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSCGGGEEEESCHHHHHHHHHHHHHHHTTTTCCEEEECTTSCHHHHHHHHH-HHHTTCEE
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCcEEEECCHHHHHHhhhhcccccccccCcccccccccchhhHHHHHH-HHhcCCEE
Confidence 4666778889999999999999999999999999876665543221 123678888888888888887765 45679999
Q ss_pred EEeCc--------hhhhc-cCCCEeEEEEEcC-CCCeeeccHHHHHHHHHh--CCcEEEEEecCccccCC-CCCCcccce
Q 001989 284 VVSDL--------KDIDY-KSGDVCGVLVQYP-GTEGEVLDYGDFIKNAHA--NGVKVVMATDLLALTIL-KPPGELGAD 350 (985)
Q Consensus 284 ~~v~~--------~~l~~-l~~~t~~V~v~~p-n~~G~v~di~~I~~~a~~--~galliV~a~~~~lg~l-~~~~~~GaD 350 (985)
+++|. +++++ ++++|++|+++++ |.+|.+.|++++.+++|. .|++++|++ .++.|.+ .+..++|+|
T Consensus 117 ~~vp~~~~~~id~~~l~~~i~~~t~lv~is~v~~~tG~~~~~~~i~~~~~~~~~~~~~~vD~-~q~~g~~~~d~~~~~~D 195 (376)
T d1eg5a_ 117 KYVPVDSRGVVKLEELEKLVDEDTFLVSIMAANNEVGTIQPVEDVTRIVKKKNKETLVHVDA-VQTIGKIPFSLEKLEVD 195 (376)
T ss_dssp EECCBCTTSCBCHHHHHHHCCTTEEEEEEESBCTTTCBBCCHHHHHHHHHHHCTTCEEEEEC-TTTTTTSCCCCTTTCCS
T ss_pred EEEcCCCCCeECHHHHHHhcCCCceEEEEECCccccceeeeehhhhhhhhhcccCceeEEEe-eeccccccccccccCcc
Confidence 99865 35556 8999999999987 679999999999998855 489999943 4566654 355789999
Q ss_pred EEEecCccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHH
Q 001989 351 IVVGSAQRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANM 430 (985)
Q Consensus 351 i~v~s~k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~ 430 (985)
++++++++|. |+||+|+++++++. .+.+.+.|++.. ...+.++.|.. ......
T Consensus 196 ~~~~s~~K~~-----gp~G~~~l~~~~~~--~~~p~~~g~~~~-----------------~~~~~~~~~~~---~~~~~~ 248 (376)
T d1eg5a_ 196 YASFSAHKFH-----GPKGVGITYIRKGV--PIRPLIHGGGQE-----------------RGLRSGTQNVP---GIVGAA 248 (376)
T ss_dssp EEEEEGGGGT-----SCTTCEEEEECTTS--CCCCSBCSSCTT-----------------TTTBCSCCCHH---HHHHHH
T ss_pred ceecccceee-----cCCCceeEEeccCc--ccCCcccCCCCc-----------------ccccCCcccch---hhhhHH
Confidence 9999995553 34678899998763 244444443211 01233444442 333333
Q ss_pred HHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcC-C--CCcceEEEecCC--HHHHHHHHHHcCceeeee---
Q 001989 431 AAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQG-L--PFFDTVKVKCAD--AHAIASAAYKIEMNLRVV--- 502 (985)
Q Consensus 431 aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~-~--~~~~~~~~~~~~--~~~v~~~L~~~GI~~~~~--- 502 (985)
+..... ..+..........+..++.++|...+ ..+.. . .....+.+..++ +.++...|.++||.++.-
T Consensus 249 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gI~vr~G~~c 324 (376)
T d1eg5a_ 249 RAMEIA---VEELSEAAKHMEKLRSKLVSGLMNLG-AHIITPLEISLPNTLSVSFPNIRGSTLQNLLSGYGIYVSTSSAC 324 (376)
T ss_dssp HHHHHH---HHTHHHHHHHHHHHHHHHHHHHHTTT-CEECSCTTSBCTTEEEEECTTCCHHHHHHHHHHTTEECBC----
T ss_pred HHhhcc---ccchhhhhhhhhhhhhhhcccccccc-ccccccccccccceeeeccCCCCHHHHHHHHhhCCeEEeCcchh
Confidence 332211 23455667777778889999998876 34432 2 233456677766 899999999999976420
Q ss_pred --------------------cCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 503 --------------------DSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 503 --------------------~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
..+.+|+|++.+||+||||+|+++|++
T Consensus 325 ~~~~~~~~~~l~~~gi~~~~~~~~iRiS~~~ynt~edid~l~~~L~~ 371 (376)
T d1eg5a_ 325 TSKDERLRHVLDAMGVDRRIAQGAIRISLCKYNTEEEVDYFLKKIEE 371 (376)
T ss_dssp --------CHHHHTTCCHHHHHHEEEEECCTTCCHHHHHHHHHHHHH
T ss_pred cCCccchhHHHHHcCCCcccCCCEEEEecCCCCCHHHHHHHHHHHHH
Confidence 024699999999999999999999984
|
| >d2e7ja1 c.67.1.9 (A:8-371) Selenocysteinyl-tRNA synthase (SepSecS) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.86 E-value=1.4e-20 Score=210.62 Aligned_cols=307 Identities=16% Similarity=0.167 Sum_probs=192.4
Q ss_pred HHHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcCCC-
Q 001989 633 MFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDA- 711 (985)
Q Consensus 633 ~~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~d~- 711 (985)
+.+.+++.+|+++|.+.+. ++++|++|+.+++.++. ++||+||++...|.++...++..|++++.+|++.
T Consensus 48 l~~~~~~~~A~~~g~e~~~-~t~g~t~a~~~~~~al~--------~~gd~Vi~~~~~h~s~~~~~~~~g~~v~~v~~~~~ 118 (364)
T d2e7ja1 48 IHDFIHNQLPKFLGCDVAR-VTNGAREAKFAVMHSLA--------KKDAWVVMDENCHYSSYVAAERAGLNIALVPKTDY 118 (364)
T ss_dssp HHHHHHTHHHHHTTSSEEE-EESSHHHHHHHHHHHHC--------CTTCEEEEETTCCHHHHHHHHHTTCEEEEECCCCT
T ss_pred HHHHHHHHHHHHhCcCEEE-EECcHHHHHHHHHHHHh--------CCCcEEEeecccccccchHHHhccceEEEeeeccc
Confidence 4567889999999998754 46778888866655442 4789999999989887777889999999999864
Q ss_pred -CCCCCHHHHHHHHHhcC--CCEEEEEEEcCC-CccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCccCCcEE
Q 001989 712 -KGNINIEELRKAAEANR--DNLSTLMVTYPS-THGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIGADVC 787 (985)
Q Consensus 712 -~g~iD~e~L~~~i~~~~--~~t~~Vvv~~pn-~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~g~Di~ 787 (985)
++.+|+++++++|++.. .++++|++++|+ ++|.+. |+++|+++|+++|+++|+|++|..+..+. +..++|+|++
T Consensus 119 ~~~~i~~~~l~~~i~~~~k~~~~~lv~i~~~~n~tG~~~-~l~~I~~ia~~~~i~livD~a~~~g~~~~-~~~~~g~D~~ 196 (364)
T d2e7ja1 119 PDYAITPENFAQTIEETKKRGEVVLALITYPDGNYGNLP-DVKKIAKVCSEYDVPLLVNGAYAIGRMPV-SLKEIGADFI 196 (364)
T ss_dssp TTCCCCHHHHHHHHHHHTTTSCEEEEEEESSCTTTCCCC-CHHHHHHHHHTTTCCEEEECTTTBTTBCC-CHHHHTCSEE
T ss_pred cccccCHHHHHhhhhhhcccCCceEEEeecCCCCCceee-cchhheeccccccchhhccccchhhhhhh-ccccccccee
Confidence 57899999999997532 457889999984 699998 89999999999999999999996544332 3456789999
Q ss_pred EeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHH
Q 001989 788 HLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKG 867 (985)
Q Consensus 788 ~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eG 867 (985)
++|+||+|+.| .++|++++++++.+.+....... . . ......... ..+.+... ..+.+... .+.
T Consensus 197 ~~S~~K~~~~~-----g~~g~l~~~~~~~~~~~~~~~~~-~----~-~~~~~~~~~--~~~~~~~~--~~~~l~~~-~~~ 260 (364)
T d2e7ja1 197 VGSGHKSMAAS-----GPIGVMGMKEEWAEIVLRRSEKY-K----N-KEVELLGCT--ARGATIIT--LMASFPHV-RER 260 (364)
T ss_dssp EEEHHHHSSCC-----SSCEEEEECTTTTTTTTCBCSSC-T----T-SBGGGTTCC--CCSHHHHH--HHHHHHHH-HHH
T ss_pred eeccccccCCC-----CCEEEEEECHHHHHHHHhhcccc-C----c-ccccccccc--cchhHHHH--HHHHHHHH-HHH
Confidence 99999999532 25789999987665432110000 0 0 000000000 01111111 11222221 111
Q ss_pred HHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCc---cccCCCCHHHHHHHHHHCCCccCCCCCCCCC
Q 001989 868 LTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGL---KNTAGIEPEDVAKRLMDYGFHGPTMSWPVPG 943 (985)
Q Consensus 868 l~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~---~~~~g~~~~~v~~~L~~~Gi~~~~~~~p~~~ 943 (985)
+.. ..+..++++++.++|++ ++.+....+.. ...+.+..+.. ..........+...|.++|++..... ...
T Consensus 261 ~~~-~~~~~~~~~~~~~~l~~~g~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g--~~~ 335 (364)
T d2e7ja1 261 IKR-WDEEVEKARRFAAEMEKLGIKQLGDNPHN--HDLMFFHAEVLYEISKKAKGGRFFLYRELKSRKIHGIKPG--LTR 335 (364)
T ss_dssp GGG-HHHHHHHHHHHHHHHHHTTCEEESSSSCC--SSEEEEECHHHHHHHHHSSSGGGHHHHHHHHTTEECSCTT--CCS
T ss_pred HHH-HHHHHHHHHHHHHHHHHcCCeecCCCCCC--cceEEEeccchHHHHHHhhccchHHHHHHHhcCCceecCC--Ccc
Confidence 222 23345678889999887 55443222111 11122222100 00000112234445666666542211 124
Q ss_pred EEEEeccCCCCHHHHHHHHccCChhHHHHhh
Q 001989 944 TLMIEPTESESKSWTGIVMLSSPSEKKLHRL 974 (985)
Q Consensus 944 ~lris~t~~~t~eeId~~~~~~~l~~~~~~~ 974 (985)
.+|++ +...|+||||+ ++++|++++++.
T Consensus 336 ~~~~~-~~~~t~edid~--~~~~l~ei~~~y 363 (364)
T d2e7ja1 336 YFKLS-TYGLSDEEVDY--VLNAFKEIIEKY 363 (364)
T ss_dssp EEEEE-CTTCCHHHHHH--HHHHHHHHHHHC
T ss_pred eEEEe-ccCCCHHHHHH--HHHHHHHHHHHh
Confidence 55665 56689999999 889999998763
|
| >d2bkwa1 c.67.1.3 (A:3-384) Alanine-glyoxylate aminotransferase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.86 E-value=6.3e-21 Score=215.49 Aligned_cols=332 Identities=11% Similarity=0.029 Sum_probs=225.8
Q ss_pred ceecCCCCCCCCCcHHHHHHHHhCCccccccCCChhhHhhhHHHHHHHHHHHHHHhcCC----CCcceeeccchHHHHHH
Q 001989 168 KSFIGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGL----PMSNASLLDEGTAAAEA 243 (985)
Q Consensus 168 ~~~lG~g~y~~~~p~~v~~~i~~~~~~~t~~~pyq~e~sqg~l~~i~e~q~~ia~L~g~----~~~~~sl~~~~ta~~ea 243 (985)
+.++..| |..+|+.|.++ +.++.+ ..+.++.. +.+.+.++.+.++++. +...+.++.+||.++++
T Consensus 4 ~~l~~PG--P~~v~~~V~~A-m~~~~~----~hr~~~f~----~~~~~~~~~~r~~~~~~~~~~~~~i~~t~sgT~a~~~ 72 (382)
T d2bkwa1 4 DTLLIPG--PIILSGAVQKA-LDVPSL----GHTSPEFV----SIFQRVLKNTRAVFKSAAASKSQPFVLAGSGTLGWDI 72 (382)
T ss_dssp CEECSSS--SCCCCHHHHHT-TSCCCC----CTTSHHHH----HHHHHHHHHHHHHTTCCGGGTCEEEEEESCTTHHHHH
T ss_pred ccccCCC--CCCCCHHHHHH-hCcccC----CCCcHHHH----HHHHHHHHHHHHHHhhhcCCCCeEEEEeCcHHHHHHH
Confidence 3456778 55688888644 333321 33445543 3445555666666653 55568888999999998
Q ss_pred HHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc---------hhhhc--cCCCEeEEEEEcC-CCCee
Q 001989 244 MAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL---------KDIDY--KSGDVCGVLVQYP-GTEGE 311 (985)
Q Consensus 244 ~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~---------~~l~~--l~~~t~~V~v~~p-n~~G~ 311 (985)
++..+...+++||+|++....|.+.+..+.. +..+..+..+.. +++++ .+++++.|++++. |.+|.
T Consensus 73 ~~~~l~~~~~~gd~vlv~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~tg~ 150 (382)
T d2bkwa1 73 FASNFILSKAPNKNVLVVSTGTFSDRFADCL--RSYGAQVDVVRPLKIGESVPLELITEKLSQNSYGAVTVTHVDTSTAV 150 (382)
T ss_dssp HHHHHSCTTCSCCEEEEECSSHHHHHHHHHH--HHTTCEEEEECCSSTTSCCCHHHHHHHHHHSCCSEEEEESEETTTTE
T ss_pred HHHHHHHhcCCCCceEEEEechhhhhhhhhc--cccccccccccccCCCCccchhHHHHHhhhccchheeeeeccccccc
Confidence 8876532334899999999999887765543 234555544321 22333 3467888888875 78999
Q ss_pred eccHHHHHHHHHhC--CcEEEEEecCccccCC-CCCCcccceEEEecC-ccccccCCCCCCcEEEEEEchhhHhcCCCce
Q 001989 312 VLDYGDFIKNAHAN--GVKVVMATDLLALTIL-KPPGELGADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRI 387 (985)
Q Consensus 312 v~di~~I~~~a~~~--galliV~a~~~~lg~l-~~~~~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~ 387 (985)
+.|++++++.|+++ +++++||+ ..++|.+ .+..+||+|++++++ |+|++| ||+|++++++++++++.+..
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~vDa-~qs~g~~pid~~~~giD~~~~s~~K~l~gP-----~G~g~l~vs~~~~~~~~~~~ 224 (382)
T d2bkwa1 151 LSDLKAISQAIKQTSPETFFVVDA-VCSIGCEEFEFDEWGVDFALTASQKAIGAP-----AGLSISLCSSRFMDYALNDS 224 (382)
T ss_dssp ECCHHHHHHHHHHHCTTSEEEEEC-TTTTTTSCCCTTTTTCSEEEEESSSTTCCC-----SCEEEEEECHHHHHHHTCHH
T ss_pred cccchhhhhhccccccceeeeeec-ccccccccccccccCeeEEeecccccCcCC-----CchhhhhccHHHHhhhhhcc
Confidence 99999999988766 58999954 4567655 456889999999999 556444 78999999999988776655
Q ss_pred eeeeecCCCCcceeeeccc-------ccccccccccCCCccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHH
Q 001989 388 VGVSIDSSGKPALRVAMQT-------REQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALG 460 (985)
Q Consensus 388 vG~t~d~~g~~~~~l~l~t-------re~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~ 460 (985)
.++.. ..|...+.. .++..+...+|+|+ ..++++.+++ .++..+|++++.++..++++++++.
T Consensus 225 ~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~Tp~~---~~i~al~~aL--~~~~~~g~~~~~~~~~~l~~~l~~~ 294 (382)
T d2bkwa1 225 KNGHV-----HGYFSSLRRWTPIMENYEAGKGAYFATPPV---QLINSLDVAL--KEILEEGLHKRWDLHREMSDWFKDS 294 (382)
T ss_dssp HHCCC-----SCSTTCHHHHHHHHHHHHTTCCCCSSCCCH---HHHHHHHHHH--HHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred cCCCc-----ccchhhhhhhhhhhhcccccccccccCCcH---HHHHHHHHHH--HHHHHhhhhhhHHHHHHHHHHHHHH
Confidence 44211 112111100 01112223455555 6778888876 6777889999999999999999999
Q ss_pred HhcCCCeEEcCC--C--Cc-ceEEEecCCHHHHHHHHHHcCceeeee-----cCCeEEEE-eccCCCHHHHHHHHHHHh
Q 001989 461 LKKLGTVEVQGL--P--FF-DTVKVKCADAHAIASAAYKIEMNLRVV-----DSNTVTAS-FDETTTLEDVDKLFIVFA 528 (985)
Q Consensus 461 L~~~g~~~~~~~--~--~~-~~~~~~~~~~~~v~~~L~~~GI~~~~~-----~~~~lris-~t~~~t~edId~li~aL~ 528 (985)
+.+..++..+.. . .. ..+++..+++.++.+.|.++||.++.- ..+.+||+ +++.++.||||+++++|.
T Consensus 295 l~~~~~~~~~~~~~~~~~s~~v~~~~~~~~~~~~~~L~~~gi~i~~G~~~~~~~~~~Ri~~~G~~~~~e~i~~l~~~l~ 373 (382)
T d2bkwa1 295 LVNGLQLTSVSRYPSNMSAHGLTAVYVADPPDVIAFLKSHGVVIAGGIHKDIGPKYIRIGHMGVTACNKNLPYMKNCFD 373 (382)
T ss_dssp HHTTTCCEESSCSSSTTBCSSCEEEECSCHHHHHHHHHHTTEECBCCCCTTTGGGEEEECCCGGGTSSTTCTHHHHHHH
T ss_pred hhhcccccccccCchhccCCcEEEEcCCCHHHHHHHHHHCCeEEECCCChhhcCCEEEEeCCcCCCCHHHHHHHHHHHH
Confidence 987633555532 1 12 235677777889999999999987531 24679999 678888899999988886
|
| >d1fc4a_ c.67.1.4 (A:) 2-amino-3-ketobutyrate CoA ligase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 2-amino-3-ketobutyrate CoA ligase species: Escherichia coli [TaxId: 562]
Probab=99.85 E-value=1.8e-21 Score=221.39 Aligned_cols=311 Identities=15% Similarity=0.155 Sum_probs=209.6
Q ss_pred cceecCCCCCCCCCcHHHHHHHHhCCccccccCCChhhHhhhHHHHHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHH
Q 001989 167 YKSFIGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAM 246 (985)
Q Consensus 167 ~~~~lG~g~y~~~~p~~v~~~i~~~~~~~t~~~pyq~e~sqg~l~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~ 246 (985)
.++|||.+.+|..+.+++. + +++ |.+ ++..++...|+...+.++++.+|+++|++. +.++++|+.+..+++.
T Consensus 52 s~dYLGl~~hp~v~~a~~~-a-~~~--~g~--~~~~sr~~~g~~~~~~~lE~~lA~~~g~e~--al~~~SG~~An~~~i~ 123 (401)
T d1fc4a_ 52 ANNYLGLANHPDLIAAAKA-G-MDS--HGF--GMASVRFICGTQDSHKELEQKLAAFLGMED--AILYSSCFDANGGLFE 123 (401)
T ss_dssp CSCTTSCTTCHHHHHHHHH-H-HHH--HCS--CCCSCHHHHCCBHHHHHHHHHHHHHHTCSE--EEEESCHHHHHHTTHH
T ss_pred ccccccccCCHHHHHHHHH-H-HHH--hCC--CcccceeeccCcHHHHHHHHHHHHhhcCCc--eEEecchhhhhHHHHH
Confidence 3467787754433333332 3 222 333 344567888888999999999999999987 7788999988777665
Q ss_pred HhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEE---eCchhhhc----c---CCCEeEEEEEcC-CCCeeeccH
Q 001989 247 CNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVV---SDLKDIDY----K---SGDVCGVLVQYP-GTEGEVLDY 315 (985)
Q Consensus 247 a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~---v~~~~l~~----l---~~~t~~V~v~~p-n~~G~v~di 315 (985)
++. +++|.|+++...|.++...++. .+.++.. .|.+++++ . .+.+.+|++... ++.|.+.|+
T Consensus 124 ~l~---~~~d~i~~d~~~h~s~~~G~~~----~~a~~~~~~~~d~~~le~~~~~~~~~~~~~~liv~egv~s~~G~~~~L 196 (401)
T d1fc4a_ 124 TLL---GAEDAIISDALNHASIIDGVRL----CKAKRYRYANNDMQELEARLKEAREAGARHVLIATDGVFSMDGVIANL 196 (401)
T ss_dssp HHC---CTTCEEEEETTCCHHHHHHHHT----SCSEEEEECTTCHHHHHHHHHHHHHTTCSSEEEEEESEETTTTEECCH
T ss_pred Hhc---CCCcEEEeCCcchHHHHccccc----cCceEEEEcCCChHHHHHHHHHhhhcccCceEEEEcCCCCCCCchhhh
Confidence 542 4789999999999999998753 2334433 35555543 2 234455555554 688999999
Q ss_pred HHHHHHHHhCCcEEEEEecCccccCCCCCCc-----c----cceEEEecC-ccccccCCCCCCcEEEEEEchhhHhcCCC
Q 001989 316 GDFIKNAHANGVKVVMATDLLALTILKPPGE-----L----GADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPG 385 (985)
Q Consensus 316 ~~I~~~a~~~galliV~a~~~~lg~l~~~~~-----~----GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~ 385 (985)
++|.++|+++|++++| ++.++.|.+...|. + .+||++++. |.|+ |+..|++..++++++.+..
T Consensus 197 ~~l~~L~~~~~a~Liv-Deah~~g~~g~~G~G~~~~~~~~~~~dii~~tl~Ka~g------g~~Gg~v~g~~~~~~~l~~ 269 (401)
T d1fc4a_ 197 KGVCDLADKYDALVMV-DDSHAVGFVGENGRGSHEYCDVMGRVDIITGTLGKALG------GASGGYTAARKEVVEWLRQ 269 (401)
T ss_dssp HHHHHHHHHTTEEEEE-ECTTTTTTSSTTSCCHHHHTTCTTCCSEEEEESSSTTC------SSSCEEEEECHHHHHHHHH
T ss_pred hHHHHHHhhcCcEEEe-hhhhccccccCCCCccchhccCCCCCeEEEeecccccc------cCCcccccCCHHHHHHHHc
Confidence 9999999999999999 46778877754322 2 279999997 8774 3445889888888765510
Q ss_pred ceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCC
Q 001989 386 RIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLG 465 (985)
Q Consensus 386 ~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g 465 (985)
.+.+.++++...++..++...........+++.++..++..++++.+.+.|
T Consensus 270 -----------------------------~~~~~~~s~~l~p~~~~aa~~~l~~~~~~~~~~~~l~~~~~~~~~~l~~~g 320 (401)
T d1fc4a_ 270 -----------------------------RSRPYLFSNSLAPAIVAASIKVLEMVEAGSELRDRLWANARQFREQMSAAG 320 (401)
T ss_dssp -----------------------------HCHHHHHSCCCCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred -----------------------------CChhhhhcCCCCHHHHHHHHhhhcccccCHHHHHHHHHHHHHHHhhhcccC
Confidence 011111111111122222211111112236788999999999999999998
Q ss_pred CeEEcCC-CCcceEEEecCC-HHHHHHHHHHcCceeeeec-------CCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 466 TVEVQGL-PFFDTVKVKCAD-AHAIASAAYKIEMNLRVVD-------SNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 466 ~~~~~~~-~~~~~~~~~~~~-~~~v~~~L~~~GI~~~~~~-------~~~lris~t~~~t~edId~li~aL~~ 529 (985)
+.+... ...-.+.+..+. +.++.++|.++||++..+. ...||++++..+|+||||+++++|.+
T Consensus 321 -~~~~~~~~pIv~v~~~~~~~a~~~~~~L~~~Gi~v~~i~~PtVp~g~~~lRi~~~a~hT~edId~~v~al~e 392 (401)
T d1fc4a_ 321 -FTLAGADHAIIPVMLGDAVVAQKFARELQKEGIYVTGFFYPVVPKGQARIRTQMSAAHTPEQITRAVEAFTR 392 (401)
T ss_dssp -CCBCCSSSSEEEEEEECHHHHHHHHHHHHHTTEECCEECTTSSCTTCEEEEEECCTTCCHHHHHHHHHHHHH
T ss_pred -CccCCCCCCEEEEEECCHHHHHHHHHHHHHCCceEEeECCCCCCCCCceEEEEECCCCCHHHHHHHHHHHHH
Confidence 766532 112123333333 7789999999999876431 24599999999999999999999985
|
| >d1bs0a_ c.67.1.4 (A:) PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) species: Escherichia coli [TaxId: 562]
Probab=99.85 E-value=3.1e-21 Score=218.12 Aligned_cols=307 Identities=12% Similarity=0.133 Sum_probs=212.5
Q ss_pred cceecCCCCCCCCCcHHHHHHHHhCCccccccCCChhhHhhhHHHHHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHH
Q 001989 167 YKSFIGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAM 246 (985)
Q Consensus 167 ~~~~lG~g~y~~~~p~~v~~~i~~~~~~~t~~~pyq~e~sqg~l~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~ 246 (985)
.++|||.+.+|..+.+++. ++- + |.+ ++..+....|+.+.+.++|+.+|+++|++. +.++++|+.+..+++.
T Consensus 45 s~dYLGl~~~p~v~~a~~~-a~~-~--~G~--~~~~sr~~~g~~~~~~~lE~~LA~~~g~e~--al~~~SG~~an~~~i~ 116 (383)
T d1bs0a_ 45 SNDYLGLSHHPQIIRAWQQ-GAE-Q--FGI--GSGGSGHVSGYSVVHQALEEELAEWLGYSR--ALLFISGFAANQAVIA 116 (383)
T ss_dssp CCCTTSGGGCHHHHHHHHH-HHH-H--HCS--CCCSBTTTTCCCHHHHHHHHHHHHHHTCSE--EEEESCHHHHHHHHHH
T ss_pred cccccccCCCHHHHHHHHH-HHH-H--hCC--CCCccccccCcchHHHHHHHHHHHhcCCCc--eEEecccchhhHHHHH
Confidence 4567887765444444442 322 2 334 334567788999999999999999999986 7788999888777766
Q ss_pred HhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEE---eCchhhhc-c---CCCEeEEEEEcC-CCCeeeccHHHH
Q 001989 247 CNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVV---SDLKDIDY-K---SGDVCGVLVQYP-GTEGEVLDYGDF 318 (985)
Q Consensus 247 a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~---v~~~~l~~-l---~~~t~~V~v~~p-n~~G~v~di~~I 318 (985)
++. +++|.|+++...|.++...++. .+.+++. .|.+++++ + .++...|++... ++.|.+.|+++|
T Consensus 117 al~---~~~d~v~~d~~~h~si~~g~~~----~~~~~~~~~hnd~~~le~~l~~~~~~~~~vv~e~v~s~~G~i~pl~~l 189 (383)
T d1bs0a_ 117 AMM---AKEDRIAADRLSHASLLEAASL----SPSQLRRFAHNDVTHLARLLASPCPGQQMVVTEGVFSMDGDSAPLAEI 189 (383)
T ss_dssp HHC---CTTCEEEEETTCCHHHHHHHHT----SSSEEEEECTTCHHHHHHHHHSCCSSCEEEEEESBCTTTCCBCCHHHH
T ss_pred hhc---CCCceEEeeccccHHHhhcccc----CCCcceEecchHHHHHHHHhcccCCCceEEEecCCCCCCCcccchhHH
Confidence 653 3889999999999999998753 3344444 45566665 2 345666666655 789999999999
Q ss_pred HHHHHhCCcEEEEEecCccccCCCCCCc-------ccceEEEecC-ccccccCCCCCCcEEEEEEchhhHhcCCCceeee
Q 001989 319 IKNAHANGVKVVMATDLLALTILKPPGE-------LGADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGV 390 (985)
Q Consensus 319 ~~~a~~~galliV~a~~~~lg~l~~~~~-------~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~ 390 (985)
.++|+++|++++| ++.+++|++...+. ...|+++.+. |.++.+ .|++.++.+..+.+-
T Consensus 190 ~~l~~~~~~~liv-Deah~~gv~G~~g~G~~~~~~~~~~~~~~t~~ka~g~~-------Gg~v~~~~~~~~~l~------ 255 (383)
T d1bs0a_ 190 QQVTQQHNGWLMV-DDAHGTGVIGEQGRGSCWLQKVKPELLVVTFGKGFGVS-------GAAVLCSSTVADYLL------ 255 (383)
T ss_dssp HHHHHHTTCEEEE-ECTTTTTTSSGGGCCHHHHTTCCCSEEEEESSSTTSSC-------CEEEEECHHHHHHHH------
T ss_pred HHHHHhcCcEEEe-ecceeeeecCCcccchHHHcCCcccccccccccccccc-------ccccccchhHHHHHH------
Confidence 9999999999999 46778887754321 2346777665 766532 367777777665541
Q ss_pred eecCCCCcceeeecccccccccccccCCCccch----hHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCC
Q 001989 391 SIDSSGKPALRVAMQTREQHIRRDKATSNICTA----QALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGT 466 (985)
Q Consensus 391 t~d~~g~~~~~l~l~tre~~irre~atsni~t~----~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~ 466 (985)
..+.++++|+ ....+..+++ ..+-....+++.++..++..++++.|.++|
T Consensus 256 -----------------------~~~~~~~~s~~~~p~~~aa~~~a~--~~~~~~~~~~~~~~l~~~~~~~~~~l~~~g- 309 (383)
T d1bs0a_ 256 -----------------------QFARHLIYSTSMPPAQAQALRASL--AVIRSDEGDARREKLAALITRFRAGVQDLP- 309 (383)
T ss_dssp -----------------------HHCHHHHSSBCCCHHHHHHHHHHH--HHHHSHHHHHHHHHHHHHHHHHHHHHTTSS-
T ss_pred -----------------------hhchhhhhcccccchHHHHHHHHH--HHHHhhhhHHHHHHHHHHHHHHHHHHHhcC-
Confidence 0011111121 1122222232 344445567788888999999999999998
Q ss_pred eEEcCC-CCcceEEEecCC-HHHHHHHHHHcCceeeeec-------CCeEEEEeccCCCHHHHHHHHHHHh
Q 001989 467 VEVQGL-PFFDTVKVKCAD-AHAIASAAYKIEMNLRVVD-------SNTVTASFDETTTLEDVDKLFIVFA 528 (985)
Q Consensus 467 ~~~~~~-~~~~~~~~~~~~-~~~v~~~L~~~GI~~~~~~-------~~~lris~t~~~t~edId~li~aL~ 528 (985)
+.+.+. ..+-.+.+..+. +.++.++|.++||++..+. ...+|++++..+|+||||+++++|.
T Consensus 310 ~~~~~~~s~Ii~v~~g~~~~a~~~~~~L~~~Gi~v~~~~~PtVp~g~~~lRi~~~a~ht~edid~l~~~L~ 380 (383)
T d1bs0a_ 310 FTLADSCSAIQPLIVGDNSRALQLAEKLRQQGCWVTAIRPPTVPAGTARLRLTLTAAHEMQDIDRLLEVLH 380 (383)
T ss_dssp CEECSCCSSBCCEEEESHHHHHHHHHHHHHTTEECCEECTTSSCTTCEEECCBCCTTCCHHHHHHHHHHHH
T ss_pred CccCCCCCCEEEEEECCHHHHHHHHHHHHHCCceEEEEcCCCCCCCCceEEEEeCCCCCHHHHHHHHHHHH
Confidence 887643 222234454433 7799999999999885432 2469999999999999999999986
|
| >d1kl1a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=99.85 E-value=4.2e-20 Score=203.53 Aligned_cols=291 Identities=18% Similarity=0.214 Sum_probs=209.3
Q ss_pred HHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHH-----HHHCCcEEEEEcCCC
Q 001989 637 LGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPAT-----AAMCGMKIVSVGTDA 711 (985)
Q Consensus 637 ~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~-----a~~~G~~vv~v~~d~ 711 (985)
+.+...++||++.+++++.||+.|++++++++. ++||+|+..+..||.|... .....++++.+++|+
T Consensus 74 a~~ra~~lF~a~~anVqp~SGs~An~av~~all--------~pGD~im~l~l~~GGHlshg~~~~~~g~~~~~~~y~~d~ 145 (405)
T d1kl1a_ 74 ARERAKQLFGAEHANVQPHSGAQANMAVYFTVL--------EHGDTVLGMNLSHGGHLTHGSPVNFSGVQYNFVAYGVDP 145 (405)
T ss_dssp HHHHHHHHHCCSEEECCCSSHHHHHHHHHHHHC--------CTTCEEEEECGGGTCCGGGTCTTSHHHHHSEEEEECBCT
T ss_pred HHHHHHHHhCCCcceeeccCchHHHHHHHHHhc--------CCCCEEEEeecccccccccCccccccceEEEEEEeccch
Confidence 346678899999999999999999988777663 5899999987777755332 234467888899986
Q ss_pred C-CCCCHHHHHHHHHhcCCCEEEEEEEcCCCccccccCHHHHHHHHHHcCCEEEEEccccccc---cCCCCCCccCCcEE
Q 001989 712 K-GNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQ---VGLTSPGYIGADVC 787 (985)
Q Consensus 712 ~-g~iD~e~L~~~i~~~~~~t~~Vvv~~pn~~G~i~~di~eI~~la~~~galliVD~a~~~~~---~~l~~pg~~g~Di~ 787 (985)
+ +.+|+|++++.+.+++|+ +|++....+.-.+ |++++.++|++.|+++++|.+|..++ +.+.+|-. ++|++
T Consensus 146 ~~~~ID~d~l~~~a~~~kPk--lIi~G~S~y~r~~--d~~~~reIad~vga~l~~D~aH~~GLIa~g~~~~P~~-~aDvv 220 (405)
T d1kl1a_ 146 ETHVIDYDDVREKARLHRPK--LIVAAASAYPRII--DFAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNPVP-YAHFV 220 (405)
T ss_dssp TTCSBCHHHHHHHHHHHCCS--EEEECCSSCCSCC--CHHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCSTT-TCSEE
T ss_pred hcccccHHHHHHHHHhhCcc--eEEeccccccccc--ChHHHHHHHhhhCCEEecchhhHhhhhhhhhcCChhh-hhhhe
Confidence 4 889999999999875554 5666554444444 79999999999999999999996444 33566765 48999
Q ss_pred EeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHH
Q 001989 788 HLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKG 867 (985)
Q Consensus 788 ~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eG 867 (985)
++++||+| +||..|+|.+++++.+.+...++.. ..++ +. ....++.|.+....+.+ .
T Consensus 221 t~tThKtl------rGPrgg~I~~~~~~~~~i~~avfPg-----------~qgg----p~-~~~iAa~Aval~Ea~~~-~ 277 (405)
T d1kl1a_ 221 TTTTHKTL------RGPRGGMILCQEQFAKQIDKAIFPG-----------IQGG----PL-MHVIAAKAVAFGEALQD-D 277 (405)
T ss_dssp EEESSSTT------CCCSCEEEEECHHHHHHHHHHHTTT-----------TCSS----CC-HHHHHHHHHHHHHHHSH-H
T ss_pred eccccccc------cCCCCceEEecchhHHHHHhhhCcc-----------cccC----cc-hhHHHHHHHHHHHHhCh-H
Confidence 99999998 6899999999977654432111100 0011 11 11223344454444544 4
Q ss_pred HHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCCC------C
Q 001989 868 LTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSW------P 940 (985)
Q Consensus 868 l~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~~------p 940 (985)
++++++++.+|++.|.+.|.+ |+.++.. +...|.+++++.. .+.+..+..+.|.+.||.++...- |
T Consensus 278 fk~Ya~qvv~NAkaLa~~L~~~G~~vv~g---gTd~H~vlvdl~~----~~~~g~~ae~~Le~agI~~Nkn~iP~d~~~~ 350 (405)
T d1kl1a_ 278 FKAYAKRVVDNAKRLASALQNEGFTLVSG---GTDNHLLLVDLRP----QQLTGKTAEKVLDEVGITVNKNTIPYDPESP 350 (405)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCEEGGG---SCSSSEEEEECGG----GTCCHHHHHHHHHHHTEECEECCCTTCSSCT
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCceeecC---CCccceeeccccc----cCCcHHHHHHHHHHcCeEEcCCcCCCCCCCC
Confidence 688999999999999999987 8888653 3456778888863 367888888889999998763221 2
Q ss_pred -CCCEEEEeccC----CCCHHHHHHHHccCChhHHHH
Q 001989 941 -VPGTLMIEPTE----SESKSWTGIVMLSSPSEKKLH 972 (985)
Q Consensus 941 -~~~~lris~t~----~~t~eeId~~~~~~~l~~~~~ 972 (985)
.++.|||...+ ...++|+.+ ..+.+.+++.
T Consensus 351 ~~~SGiRiGT~a~TtrG~~e~dm~~--ia~~I~~~l~ 385 (405)
T d1kl1a_ 351 FVTSGIRIGTAAVTTRGFGLEEMDE--IAAIIGLVLK 385 (405)
T ss_dssp TTCSEEEEECHHHHHTTCCHHHHHH--HHHHHHHHHT
T ss_pred CCCCceeecCHHHHhCCCCHHHHHH--HHHHHHHHHh
Confidence 34789998764 467788888 5566666654
|
| >d1dfoa_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Escherichia coli [TaxId: 562]
Probab=99.84 E-value=6.5e-20 Score=203.00 Aligned_cols=292 Identities=19% Similarity=0.175 Sum_probs=208.6
Q ss_pred HHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHH-----HHHCCcEEEEEcCCC
Q 001989 637 LGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPAT-----AAMCGMKIVSVGTDA 711 (985)
Q Consensus 637 ~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~-----a~~~G~~vv~v~~d~ 711 (985)
+++...++||++.+++++.||+.|++++++++. +++|+|+..+..||.|... .....++++.+++|+
T Consensus 77 a~~ra~~lF~a~~anVqp~SGs~AN~av~~All--------~pGD~Il~l~l~~GGHlshg~~~~~~g~~~~~~~y~~d~ 148 (416)
T d1dfoa_ 77 AIDRAKELFGADYANVQPHSGSQANFAVYTALL--------EPGDTVLGMNLAHGGHLTHGSPVNFSGKLYNIVPYGIDA 148 (416)
T ss_dssp HHHHHHHHHTCSEEECCCSSHHHHHHHHHHHHC--------CTTCEEEEECTTTTCCGGGTCTTSHHHHHSEEEEECBCS
T ss_pred HHHHHHHHhCCCcceeecccCccHHHHHHHHhc--------CCCCeeeeccccccccccccccccccCceEEEEecccCC
Confidence 446677899999999999999999988887763 5899999988888876432 233457888889888
Q ss_pred CCCCCHHHHHHHHHhcCCCEEEEEEEcCCCccccccCHHHHHHHHHHcCCEEEEEccccccc---cCCCCCCccCCcEEE
Q 001989 712 KGNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQ---VGLTSPGYIGADVCH 788 (985)
Q Consensus 712 ~g~iD~e~L~~~i~~~~~~t~~Vvv~~pn~~G~i~~di~eI~~la~~~galliVD~a~~~~~---~~l~~pg~~g~Di~~ 788 (985)
++.+|.|++++.+.+++| ++|++....+ .... |++++.++|++.|+++++|.+|..++ +.+.+|-.+ +|+++
T Consensus 149 ~~~IDyd~l~~~a~~~kP--klIi~G~S~y-~r~~-d~~~~reiad~vga~l~~D~aH~~GLIa~g~~~sP~~~-aDvvt 223 (416)
T d1dfoa_ 149 TGHIDYADLEKQAKEHKP--KMIIGGFSAY-SGVV-DWAKMREIADSIGAYLFVDMAHVAGLVAAGVYPNPVPH-AHVVT 223 (416)
T ss_dssp SSSBCHHHHHHHHHHHCC--SEEEEECSSC-CSCC-CHHHHHHHHHHTTCEEEEECTTTHHHHHHTSSCCCTTT-SSEEE
T ss_pred ccCccHHHHHHHHHHhcc--ceEEeccccc-cccc-CHHHHHHHHHhcCceEEcchhhhhcceeccccCCcccc-cceee
Confidence 899999999999986555 4566655443 3333 89999999999999999999996544 335567665 69999
Q ss_pred eCCcccccccCCCCCCceEEEEEcc---cccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcH
Q 001989 789 LNLHKTFCIPHGGGGPGMGPIGVKK---HLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGS 865 (985)
Q Consensus 789 ~s~hK~l~~p~g~GGPg~G~i~~~~---~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~ 865 (985)
+++||+| +||..|+|.+++ ++.+.+...++ +.+.+++. ....++.|.+. .....
T Consensus 224 ~tThKtl------rGPrggiI~~~~~~~~~~~~i~~avf---------------Pg~qggp~-~~~iaa~Aval-~Ea~~ 280 (416)
T d1dfoa_ 224 TTTHKTL------AGPRGGLILAKGGSEELYKKLNSAVF---------------PGGQGGPL-MHVIAGKAVAL-KEAME 280 (416)
T ss_dssp EESSSTT------CCCSCEEEEESSCCHHHHHHHHHHHT---------------TTTCSSCC-HHHHHHHHHHH-HHTTS
T ss_pred eehhhcc------cCCCceEEEeccchHhHHHHHHhhhC---------------cccccCcc-HHHHHHHHHHH-HHHcC
Confidence 9999998 689999999973 33332211111 00000111 11222333344 33334
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCC------
Q 001989 866 KGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMS------ 938 (985)
Q Consensus 866 eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~------ 938 (985)
..++++++++.+|++.|++.|.+ |++++..+ +..|.++++++. .++++.++.+.|.+.||.++...
T Consensus 281 ~~fk~Y~~qvv~NA~~La~~L~~~G~~iv~gg---TdnHlvlvdl~~----~~~~G~~a~~~Le~~gI~~Nkn~iP~d~~ 353 (416)
T d1dfoa_ 281 PEFKTYQQQVAKNAKAMVEVFLERGYKVVSGG---TDNHLFLVDLVD----KNLTGKEADAALGRANITVNKNSVPNDPK 353 (416)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCEEGGGS---CSSSEEEEECGG----GTCCHHHHHHHHHHTTEECEECCCTTCSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCcccccCC---CCCceeEEEecc----cCCCHHHHHHHHHHcCeEEeCCcCCCCCC
Confidence 45788999999999999999987 88886543 456778888863 36788999999999999876322
Q ss_pred CC-CCCEEEEeccC----CCCHHHHHHHHccCChhHHHHh
Q 001989 939 WP-VPGTLMIEPTE----SESKSWTGIVMLSSPSEKKLHR 973 (985)
Q Consensus 939 ~p-~~~~lris~t~----~~t~eeId~~~~~~~l~~~~~~ 973 (985)
.| .++.|||..++ -..++|+++ ..+.+.+++..
T Consensus 354 ~~~~~SGiRiGT~a~TtrG~~e~d~~~--iA~~I~~~l~~ 391 (416)
T d1dfoa_ 354 SPFVTSGIRVGTPAITRRGFKEAEAKE--LAGWMCDVLDS 391 (416)
T ss_dssp CTTTCSEEEEECHHHHHTTCCHHHHHH--HHHHHHHHHHT
T ss_pred CCCCCCceEeCCHHHHhCCCCHHHHHH--HHHHHHHHHHc
Confidence 12 35789999764 466788888 55556665543
|
| >d1pmma_ c.67.1.6 (A:) Glutamate decarboxylase beta, GadB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Pyridoxal-dependent decarboxylase domain: Glutamate decarboxylase beta, GadB species: Escherichia coli [TaxId: 562]
Probab=99.84 E-value=1.1e-18 Score=200.58 Aligned_cols=356 Identities=12% Similarity=0.040 Sum_probs=231.7
Q ss_pred CCCCCCCCCCCHHHHHHHHHHH-hcCCCccceecCCCCCCCCCcHHHHHHHHhCCccccccCCChhhHhhhHHHHHHHHH
Q 001989 139 MKFSKFDEGLTESQMIEHMQKL-ASMNKVYKSFIGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQ 217 (985)
Q Consensus 139 ~~lp~~~~~~se~e~~~~~~~l-~~~n~~~~~~lG~g~y~~~~p~~v~~~i~~~~~~~t~~~pyq~e~sqg~l~~i~e~q 217 (985)
..|| ..++++.++.+.+..- .-.+....|+.. +-.+.+|+.+. .++.. + ..-+....+.+..+.+...+..
T Consensus 28 ~~~p--~~~~~~~~~~~~i~d~l~~dg~~~~n~as--f~~t~~~~~~~-~l~~~--~-~~~N~~~~~~~P~~~~lE~~~v 99 (450)
T d1pmma_ 28 KRFP--LHEMRDDVAFQIINDELYLDGNARQNLAT--FCQTWDDENVH-KLMDL--S-INKNWIDKEEYPQSAAIDLRCV 99 (450)
T ss_dssp SSCC--CSCCCHHHHHHHHHHHGGGSCCGGGBCSC--CSCCCCCHHHH-HHHHH--T-TTCBTTCTTTSHHHHHHHHHHH
T ss_pred ccCC--ccCCCHHHHHHHHHHHhccCCCccccccc--cccCCCCHHHH-HHHHH--H-HhcCCCCcccCccHHHHHHHHH
Confidence 4677 5789999998888752 211211122222 22345777775 34432 1 1124556677778888999999
Q ss_pred HHHHHhcCCCCc-----ceeeccchHHHHHHHHHHhhhh---------cCCCCEEEEcCCCChhHHHHHHHhhcCCCeEE
Q 001989 218 TMIADLTGLPMS-----NASLLDEGTAAAEAMAMCNNIQ---------KGKKKTFIIASNCHPQTIDICITRADGFDIKV 283 (985)
Q Consensus 218 ~~ia~L~g~~~~-----~~sl~~~~ta~~ea~~~a~~~~---------~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v 283 (985)
.++|+|+|++.. ...++.|||.++...+++.+.. +.....++++...|.++.+.++ .+|+++
T Consensus 100 ~~la~L~~~p~~~~~~~~G~~t~GgSeA~~~a~~aar~~~~~~~~~~g~~~~~~~~~~~~~H~s~~Kaa~----~~gi~~ 175 (450)
T d1pmma_ 100 NMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWRWRKRMEAAGKPTDKPNLVCGPVQICWHKFAR----YWDVEL 175 (450)
T ss_dssp HHHHHHTTCCCCTTSCCSEEEESSHHHHHHHHHHHHHHHHHHHHHHHTCCCSCCEEEESSCCHHHHHHHH----HTTCEE
T ss_pred HHHHHHhCCCccccCCCcCeeeCchHHHHHHHHHHHHHHHHHHhhhcCCCCCCceEEecccHHHHHHHHH----HcCCCc
Confidence 999999998642 3577888885554444443321 1123357888899999888865 468999
Q ss_pred EEeCc---------hhhhc-cCCCEeEEEEEcC-CCCeeeccHHHHHHH------HHhCCcEEEEEecC-cccc-CCCC-
Q 001989 284 VVSDL---------KDIDY-KSGDVCGVLVQYP-GTEGEVLDYGDFIKN------AHANGVKVVMATDL-LALT-ILKP- 343 (985)
Q Consensus 284 ~~v~~---------~~l~~-l~~~t~~V~v~~p-n~~G~v~di~~I~~~------a~~~galliV~a~~-~~lg-~l~~- 343 (985)
+.++. ++|++ ++++|++|+++.+ |.+|.++|+++|+++ +|++|++++||+-. .+.. +..+
T Consensus 176 ~~v~~~~~~~~~d~~~L~~~i~~~t~~Vv~t~gtt~tG~~dpv~~i~~i~~~~~~a~~~~i~lHVDAA~gG~~~p~~~~~ 255 (450)
T d1pmma_ 176 REIPMRPGQLFMDPKRMIEACDENTIGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFVAPD 255 (450)
T ss_dssp EECCCBTTBCSCCHHHHHHHCCTTEEEEECBBSCTTTCBBCCHHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTT
T ss_pred eEeeecCCCCcCcHHHHHHHhhhCceEEEeeeeeccCCCccccchhhHHHHHHHHHhccCcEEEeehhhccceeeeechh
Confidence 88864 35666 8999999999986 679999999988877 46789999996421 1111 1111
Q ss_pred ----CCcccceEEEecCccc-cccCCCCCCcEEEEEEchhhH-hcCCCceeeeeecCCCCcceeeecccccccccccccC
Q 001989 344 ----PGELGADIVVGSAQRF-GVPMGYGGPHAAFLATSQEYK-RMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKAT 417 (985)
Q Consensus 344 ----~~~~GaDi~v~s~k~l-g~P~~~GGP~~G~l~~~~~~~-~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~at 417 (985)
.+-.+||.+..++||+ ++| +|+|++++|++-. .........+ ..+.. -..++ +.-|+
T Consensus 256 ~~~~~~~~~aDSi~~s~HK~~~~p-----~g~g~l~~r~~~~~~~~~~~~~~y---l~~~~-~~~~~----~~sr~---- 318 (450)
T d1pmma_ 256 IVWDFRLPRVKSISASGHKFGLAP-----LGCGWVIWRDEEALPQELVFNVDY---LGGQI-GTFAI----NFSRP---- 318 (450)
T ss_dssp CCCSTTSTTEEEEEEETTTTTCCC-----SSCEEEEESSGGGSCGGGCEEEEE---TTEEE-EECCS----CCSCB----
T ss_pred hhhhhcccceeEeecChhhccCCC-----CCeeEEEecChhhhhhhcccccCc---CCCCc-CCCcc----cCccc----
Confidence 1335799999999554 445 3578888886432 1111000000 00000 00000 00111
Q ss_pred CCccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcC--C--CCcceEEEecC-----C--HH
Q 001989 418 SNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQG--L--PFFDTVKVKCA-----D--AH 486 (985)
Q Consensus 418 sni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~--~--~~~~~~~~~~~-----~--~~ 486 (985)
. ..+.++ ...+..+|.+|++++.+++.++++||.++|++.++++++. . +..+.|+|+.. + ..
T Consensus 319 --~---~~~~~~--~~~l~~~G~~G~~~~~~~~~~la~~l~~~L~~~~~~el~~~~~p~~~l~~V~Fr~~~~~~~~~~~~ 391 (450)
T d1pmma_ 319 --A---GQVIAQ--YYEFLRLGREGYTKVQNASYQVAAYLADEIAKLGPYEFICTGRPDEGIPAVCFKLKDGEDPGYTLY 391 (450)
T ss_dssp --S---HHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCEEEEEECCTTTBSSEEEEEECTTCCCSSCHH
T ss_pred --h---HHHHHH--HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEeCCCCCCceEEEEEecCCcccCCCCHH
Confidence 0 122222 2235789999999999999999999999999997799873 2 34556777653 2 67
Q ss_pred HHHHHHHHcCceeeee--c-----CCeEEEEeccCCCHHHHHHHHHHHhCC
Q 001989 487 AIASAAYKIEMNLRVV--D-----SNTVTASFDETTTLEDVDKLFIVFAGG 530 (985)
Q Consensus 487 ~v~~~L~~~GI~~~~~--~-----~~~lris~t~~~t~edId~li~aL~~~ 530 (985)
+++++|+++|+.++.. . ...+|+++.+.+|++++|+|++.|++.
T Consensus 392 ~l~~~L~~~Gw~v~~~~~p~~~~~~~~lRvvv~~~~t~e~~d~lv~dl~~~ 442 (450)
T d1pmma_ 392 DLSERLRLRGWQVPAFTLGGEATDIVVMRIMCRRGFEMDFAELLLEDYKAS 442 (450)
T ss_dssp HHHHHHHTTTCBCCEEECCTTCTTCEEEEEECCTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCeeeccCcCCCcCCcEEEEEEccCCCCHHHHHHHHHHHHHH
Confidence 8999999999987532 1 246999999999999999999999853
|
| >d1vjoa_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]
Probab=99.83 E-value=3.2e-19 Score=200.50 Aligned_cols=328 Identities=14% Similarity=0.111 Sum_probs=219.6
Q ss_pred ecCCCCCCCCCcHHHHHHHHhCCccccccCCChhhHhhhHHHHHHHHHHHHHHhcCCCCcc-eeeccchHHHHHHHHHHh
Q 001989 170 FIGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMSN-ASLLDEGTAAAEAMAMCN 248 (985)
Q Consensus 170 ~lG~g~y~~~~p~~v~~~i~~~~~~~t~~~pyq~e~sqg~l~~i~e~q~~ia~L~g~~~~~-~sl~~~~ta~~ea~~~a~ 248 (985)
+++.| |..+|+.|.++ .+.++. +.++ +...+.+.+++..+++|+|++... +.+..|||.++++++..+
T Consensus 21 l~~PG--P~~v~~~Vl~a-m~~~~~----~hr~----~ef~~i~~~~r~~l~~ll~~~~~~~i~~~g~gT~~~~~~~~~~ 89 (377)
T d1vjoa_ 21 LLGPG--PSNAHPSVLQA-MNVSPV----GHLD----PAFLALMDEIQSLLRYVWQTENPLTIAVSGTGTAAMEATIANA 89 (377)
T ss_dssp ECSSS--CCCCCHHHHHH-HSSCCC----CTTS----HHHHHHHHHHHHHHHHHHTCCCSCEEEESSCHHHHHHHHHHHH
T ss_pred eecCC--CCCCCHHHHHH-hCcCCC----CCCC----HHHHHHHHHHHHHHHHHhCCCCCeEEEEcCcHHHHHHHHHHhc
Confidence 56778 66788888744 333332 3333 344678999999999999997654 444567899999888765
Q ss_pred hhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeC--c------hhhhc--cCCCEeEEEEEc-CCCCeeeccHHH
Q 001989 249 NIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSD--L------KDIDY--KSGDVCGVLVQY-PGTEGEVLDYGD 317 (985)
Q Consensus 249 ~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~--~------~~l~~--l~~~t~~V~v~~-pn~~G~v~di~~ 317 (985)
. .+++++++....|.+....+.. +..+.....+. . ++.+. .+++++.|++++ .|.+|.+.|+++
T Consensus 90 ~---~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~tg~~~~i~~ 164 (377)
T d1vjoa_ 90 V---EPGDVVLIGVAGYFGNRLVDMA--GRYGADVRTISKPWGEVFSLEELRTALETHRPAILALVHAETSTGARQPLEG 164 (377)
T ss_dssp C---CTTCEEEEEESSHHHHHHHHHH--HHTTCEEEEEECCTTCCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCTT
T ss_pred c---ccccccceeeechhhhhhhhhh--hhhcccccccccCCCCcccchhhhhhhhcCcceeeeeeeeeccceeeechhh
Confidence 2 2789999999999876655543 23344444432 1 11221 345778887776 588999999999
Q ss_pred HHHHHHhCCcEEEEEecCccccCC-CCCCcccceEEEecC-ccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCC
Q 001989 318 FIKNAHANGVKVVMATDLLALTIL-KPPGELGADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSS 395 (985)
Q Consensus 318 I~~~a~~~galliV~a~~~~lg~l-~~~~~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~ 395 (985)
|+++||++|++++||+ .++.|.+ .+..+||+|++++++ |+++ |+||+|+++++++.++..+....++.
T Consensus 165 i~~~~~~~g~~~~vDa-~~~~g~~~~~~~~~~~d~~~~s~~K~~~-----gp~g~~~~~~~~~~~~~~~~~~~~~~---- 234 (377)
T d1vjoa_ 165 VGELCREFGTLLLVDT-VTSLGGVPIFLDAWGVDLAYSCSQKGLG-----CSPGASPFTMSSRAIEKLQRRRTKVA---- 234 (377)
T ss_dssp HHHHHHHHTCEEEEEC-TTTTTTSCCCTTTTTCSEEECCSSSTTC-----SCSSCEEEEECHHHHHHHHTCSSCCS----
T ss_pred hhhhhhhccceEEEec-chhhhhhhhcccccccceeeeccccccc-----CCCEEEEecchhhHHhhhhccCCCCc----
Confidence 9999999999999965 4566654 456899999999999 5564 44678999999988776544333311
Q ss_pred CCcceeeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCC--
Q 001989 396 GKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLP-- 473 (985)
Q Consensus 396 g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~-- 473 (985)
.+.+..............+..........++.++. ..+..+|++.+.++..+++.++++.|.+.| +.++.++
T Consensus 235 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~g~~~~~~~~~~~~~~l~~~l~~~~-~~~~~~~~~ 308 (377)
T d1vjoa_ 235 ---NWYLDMNLLGKYWGSERVYHHTAPINLYYALREAL--RLIAQEGLANCWQRHQKNVEYLWERLEDIG-LSLHVEKEY 308 (377)
T ss_dssp ---CSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHH--HHHHHHCHHHHHHHHHHHHHHHHHHHHHTT-CCBSSCGGG
T ss_pred ---ceeeccchhhhccCcccccccccceechhhhHHHH--hhhhhcCchHHHHHHHHHhhhhhhhhhccC-ceeecChHh
Confidence 01111100001111111222222223344443433 455667899999999999999999999987 6665322
Q ss_pred Ccc-eEEEecCC---HHHHHHHHHH-cCceeee----ecCCeEEEE-eccCCCHHHHHHHHHHHhC
Q 001989 474 FFD-TVKVKCAD---AHAIASAAYK-IEMNLRV----VDSNTVTAS-FDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 474 ~~~-~~~~~~~~---~~~v~~~L~~-~GI~~~~----~~~~~lris-~t~~~t~edId~li~aL~~ 529 (985)
..+ .++|..++ +.++.+.|.+ +||.++. ..++.+|+| ++.++|.||||+|+++|++
T Consensus 309 rs~~v~~~~~p~~~~~~~l~~~L~~~~gI~v~~G~~~~~~~~~Ris~~g~~~t~edi~~lv~al~~ 374 (377)
T d1vjoa_ 309 RLPTLTTVCIPDGVDGKAVARRLLNEHNIEVGGGLGELAGKVWRVGLMGFNSRKESVDQLIPALEQ 374 (377)
T ss_dssp BCSSEEEEECCTTCCHHHHHHHHHHHHCEECEECCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHhcCCEEEecCcccccCCEEEEecCcCCCCHHHHHHHHHHHHH
Confidence 122 35666653 8899988865 5998743 235789999 5788999999999999974
|
| >d2ch1a1 c.67.1.3 (A:2-389) 3-hydroxykynurenine transaminase {Malaria mosquito (Anopheles gambiae) [TaxId: 7165]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: 3-hydroxykynurenine transaminase species: Malaria mosquito (Anopheles gambiae) [TaxId: 7165]
Probab=99.83 E-value=3.6e-19 Score=201.17 Aligned_cols=320 Identities=14% Similarity=0.118 Sum_probs=205.6
Q ss_pred hhHHHHHHHHHHHHHHHhCCCcc--ceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHH--HHHCCcE
Q 001989 628 QGYQEMFNNLGEWLCTITGFDSF--SLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPAT--AAMCGMK 703 (985)
Q Consensus 628 ~G~~~~~~e~~~~la~l~G~~~~--~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~--a~~~G~~ 703 (985)
+.+.++++++++.|++++|.+.. .++.+||+.++++++..+. .+++++++....|...... ++..+..
T Consensus 46 ~ef~~i~~~~r~~L~~ll~~~~~~~i~~~gsgT~a~ea~~~~l~--------~~~~~vl~~~~g~~~~~~~~~~~~~~~~ 117 (388)
T d2ch1a1 46 AELFRTMDEVKDGLRYIFQTENRATMCVSGSAHAGMEAMLSNLL--------EEGDRVLIAVNGIWAERAVEMSERYGAD 117 (388)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCCSCEEEESSCHHHHHHHHHHHHC--------CTTCEEEEEESSHHHHHHHHHHHHTTCE
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCeEEEEcCcHHHHHHHHHHHhc--------cccccccccccccccccchhhhhhhccc
Confidence 45668899999999999998753 3445677777765544332 3567787765544333322 4567888
Q ss_pred EEEEcCCCCCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCcc
Q 001989 704 IVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYI 782 (985)
Q Consensus 704 vv~v~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~ 782 (985)
++.++.++....+.+.+++.+.. .+++++.+++- |.+|+.. |+++|+++||++|++++||+++..+...+ +..++
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~t~tG~~~-~~~~i~~~~~~~~~~~~vD~~ss~g~~pi-d~~~~ 193 (388)
T d2ch1a1 118 VRTIEGPPDRPFSLETLARAIEL--HQPKCLFLTHGDSSSGLLQ-PLEGVGQICHQHDCLLIVDAVASLCGVPF-YMDKW 193 (388)
T ss_dssp EEEEECCTTSCCCHHHHHHHHHH--HCCSEEEEESEETTTTEEC-CCTTHHHHHHHTTCEEEEECTTTBTTBCC-CTTTT
T ss_pred ccccccccccccchhhhhhhhcc--CCcceeeeeeccccccccc-chhhhcchhccccceeeeeeeeccccccc-chhcc
Confidence 88888877777888888877753 46677777774 5789998 89999999999999999999997554443 56789
Q ss_pred CCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCcccc---CCCC-------CCCCCCCCCCCCCCcchhhhHH
Q 001989 783 GADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVS---TGGI-------PAPEKSQPLGTIAAAPWGSALI 852 (985)
Q Consensus 783 g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~---~~~~-------~~~~~~~~~~~i~s~~~g~~~~ 852 (985)
++|+++++.||+++ |.||+|+++.++.....+.....+. ..+. ........+.++.. ...
T Consensus 194 ~~d~~~~s~~K~~~-----gp~G~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~-----~~~ 263 (388)
T d2ch1a1 194 EIDAVYTGAQKVLG-----APPGITPISISPKALDVIRNRRTKSKVFYWDLLLLGNYWGCYDEPKRYHHTVA-----SNL 263 (388)
T ss_dssp TCCEEECCCC-CCC-----CCSSCEEEEECHHHHHHHHTCSSCCSCGGGCHHHHHHHTTCSSSCCCCCCCCC-----HHH
T ss_pred CceEEEEccccccC-----CCCeEEEEeccHHHHHhhhcccCccccccccchhhhhhhcccccccccCccch-----HHH
Confidence 99999999999985 3458999999875443221110000 0000 00001111222221 122
Q ss_pred HHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHC-
Q 001989 853 LPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDY- 930 (985)
Q Consensus 853 ~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~- 930 (985)
+......+..+..+|.....++......++...+.. +..+....+.......+.+.++ .|++..++.+.|.++
T Consensus 264 i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rs~~v~~~~~p-----~g~~~~~l~~~l~~~~ 338 (388)
T d2ch1a1 264 IFALREALAQIAEEGLENQIKRRIECAQILYEGLGKMGLDIFVKDPRHRLPTVTGIMIP-----KGVDWWKVSQYAMNNF 338 (388)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTCCBSSCSGGGBCTTEEEEECC-----TTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhcccccccCCHHHhCCeEEEEECC-----CCCCHHHHHHHHhhcC
Confidence 233345566666666666666666666666666654 3333221111111123456664 378899999998664
Q ss_pred CCccCC-CCCCCCCEEEEe-ccCCCCHHHHHHHHccCChhHHHHhhcc
Q 001989 931 GFHGPT-MSWPVPGTLMIE-PTESESKSWTGIVMLSSPSEKKLHRLKM 976 (985)
Q Consensus 931 Gi~~~~-~~~p~~~~lris-~t~~~t~eeId~~~~~~~l~~~~~~~~~ 976 (985)
||.+.. ...-..+.+||+ +..++|+||||+ ++++|+++++..+.
T Consensus 339 gI~v~~G~~~~~~~~~RIs~~g~~~t~edI~~--ll~alke~L~~~~~ 384 (388)
T d2ch1a1 339 SLEVQGGLGPTFGKAWRVGIMGECSTVQKIQF--YLYGFKESLKATHP 384 (388)
T ss_dssp CBCCBCCCGGGTTTEEEEECCGGGCSHHHHHH--HHHHHHHHHHHHCT
T ss_pred CEEEeCCCccccCCEEEEcCCcCCCCHHHHHH--HHHHHHHHHHhhCC
Confidence 987653 221124689999 678899999999 88999999887653
|
| >d1m32a_ c.67.1.3 (A:) 2-aminoethylphosphonate transaminase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: 2-aminoethylphosphonate transaminase species: Salmonella typhimurium [TaxId: 90371]
Probab=99.82 E-value=4.8e-19 Score=197.95 Aligned_cols=310 Identities=11% Similarity=0.060 Sum_probs=189.0
Q ss_pred hHHHHHHHHHHHHHHHhCCCcc---ceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEE-EcCCCCcccH-HHHHHCCcE
Q 001989 629 GYQEMFNNLGEWLCTITGFDSF---SLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCI-IPVSAHGTNP-ATAAMCGMK 703 (985)
Q Consensus 629 G~~~~~~e~~~~la~l~G~~~~---~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~II-v~~~~Hg~~~-~~a~~~G~~ 703 (985)
...+.++++++.+++++|.+.. .++.+||+.++++++ .... .++++++ +....++... ..+...+..
T Consensus 30 ~~~~~~~~~r~~l~~l~~~~~~~~~i~~t~s~T~~~~~~~---~~l~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (361)
T d1m32a_ 30 YNIGVVEQIRQQLTALATASEGYTSVLLQGSGSYAVEAVL---GSAL-----GPQDKVLIVSNGAYGARMVEMAGLMGIA 101 (361)
T ss_dssp HHTTTHHHHHHHHHHHHCSSSSEEEEEEESCHHHHHHHHH---HHSC-----CTTCCEEEEESSHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHHhCCCCCCEEEEECCCHHHHHHHHH---HHhh-----hhccccceeeehhhhhhHHHHhhhhhcc
Confidence 3456678999999999999763 244466777664433 3221 2334444 4433222111 123444555
Q ss_pred EEEEcCCCCCCCCHHH--HHHHHHhcCCCEEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCC
Q 001989 704 IVSVGTDAKGNINIEE--LRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPG 780 (985)
Q Consensus 704 vv~v~~d~~g~iD~e~--L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg 780 (985)
...+....+...+.+. ....++ +++++|.+++. |.+|++. |+++|+++||++|++++||++|+.+...+ +..
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~tG~~~-~i~~i~~~~~~~g~~~~vDa~qs~G~~~~-d~~ 176 (361)
T d1m32a_ 102 HHAYDCGEVARPDVQAIDAILNAD---PTISHIAMVHSETTTGMLN-PIDEVGALAHRYGKTYIVDAMSSFGGIPM-DIA 176 (361)
T ss_dssp EEEEECCTTSCCCHHHHHHHHHHC---TTCCEEEEESEETTTTEEC-CHHHHHHHHHHHTCEEEEECTTTTTTSCC-CTT
T ss_pred cccccccccCCccchhhHHHHHhc---cCccceEEEeeecccccch-hhhhhhhhhcccceeeEeecccccCcccc-ccc
Confidence 5555544444444433 333333 78888999886 5699999 99999999999999999999997665544 567
Q ss_pred ccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCC--------CCCCCCCCCCCCCCcchhhhHH
Q 001989 781 YIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGI--------PAPEKSQPLGTIAAAPWGSALI 852 (985)
Q Consensus 781 ~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~--------~~~~~~~~~~~i~s~~~g~~~~ 852 (985)
++++|++++++|||++ |.||+|+++++++..........++.... ........+.++ ..
T Consensus 177 ~~~~D~~~~s~~K~l~-----gp~G~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~--------~~ 243 (361)
T d1m32a_ 177 ALHIDYLISSANKCIQ-----GVPGFAFVIAREQKLAACKGHSRSLSLDLYAQWRCMEDNHGKWRFTSPT--------HT 243 (361)
T ss_dssp TTTCSEEEEESSSTTC-----CCSSEEEEEEEHHHHTTCTTCCSCSTTCHHHHHHHHHHTTTCCSSCCCH--------HH
T ss_pred ccccceEEeeeccccc-----CCCCceEEEechhhhhhhccccccccccchhhhccccccccccCCCCCc--------hh
Confidence 8899999999999984 33599999999877766654443322110 000011111111 11
Q ss_pred HHHHHHHHHHhcHHHH-HHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceee-EEEEEecCccccCCCCHHHHHHHHHH
Q 001989 853 LPISYTYIAMMGSKGL-TEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAH-EFIVDLRGLKNTAGIEPEDVAKRLMD 929 (985)
Q Consensus 853 ~~~a~a~l~~lg~eGl-~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~-~~iv~~~~~~~~~g~~~~~v~~~L~~ 929 (985)
.......+..+..+|. ....++..+.++++.+.++. ++.+... + ....+ .+.+..+. ..+.+..++.+.|.+
T Consensus 244 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~-~-~~rs~~v~~~~~p~---~~~~~~~~~~~~l~~ 318 (361)
T d1m32a_ 244 VLAFAQALKELAKEGGVAARHQRYQQNQRSLVAGMRALGFNTLLD-D-ELHSPIITAFYSPE---DPQYRFSEFYRRLKE 318 (361)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCCBSSC-G-GGBCSSEEEEECCC---CTTCCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHhhcCCcccCC-h-hhcCCcEEEEECCC---CCCCCHHHHHHHHHH
Confidence 1222233333334443 34445667778888888876 4443221 1 11111 23344431 124678899999999
Q ss_pred CCCccCCCCCCCCCEEEEeccCCCCHHHHHHHHccCChhHHH
Q 001989 930 YGFHGPTMSWPVPGTLMIEPTESESKSWTGIVMLSSPSEKKL 971 (985)
Q Consensus 930 ~Gi~~~~~~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~~ 971 (985)
+||.+..-....++.+||+...+++++|||+ ++++|++++
T Consensus 319 ~gi~i~~G~~~~~~~~Ris~~g~~~~~di~~--lv~al~~~L 358 (361)
T d1m32a_ 319 QGFVIYPGKVSQSDCFRIGNIGEVYAADITA--LLTAIRTAM 358 (361)
T ss_dssp TTEECEECCCSSSCEEEEECCSSCCHHHHHH--HHHHHHHHC
T ss_pred CCcEEECCCcCCCCEEEEeCCCCCCHHHHHH--HHHHHHHHc
Confidence 9998643111124789999655789999999 778888775
|
| >d1iuga_ c.67.1.3 (A:) Subgroup IV putative aspartate aminotransferase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Subgroup IV putative aspartate aminotransferase species: Thermus thermophilus [TaxId: 274]
Probab=99.82 E-value=3.7e-18 Score=190.09 Aligned_cols=321 Identities=12% Similarity=0.050 Sum_probs=219.5
Q ss_pred ecCCCCCCCCCcHHHHHHHHhCCccccccCCChhhHhhhHHHHHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhh
Q 001989 170 FIGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNN 249 (985)
Q Consensus 170 ~lG~g~y~~~~p~~v~~~i~~~~~~~t~~~pyq~e~sqg~l~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~ 249 (985)
.++.| |..+|+.|.++ .+++.+ +...++ -.+.+.+.++.+.++++.+...+.+..+||.++|++.+.+
T Consensus 3 L~~PG--P~~v~~~V~~a-m~~~~~----~hr~~~----f~~i~~~~~~~l~~ll~~~~~~i~~~gsgT~a~e~~~~nl- 70 (348)
T d1iuga_ 3 LLTPG--PVRLHPKALEA-LARPQL----HHRTEA----AREVFLKARGLLREAFRTEGEVLILTGSGTLAMEALVKNL- 70 (348)
T ss_dssp ECSSS--SCCCCHHHHHH-HHSCCC----CTTSHH----HHHHHHHHHHHHHHHHTCSSEEEEEESCHHHHHHHHHHHH-
T ss_pred ccCCC--CCCCCHHHHHH-hcCCCC----CCCCHH----HHHHHHHHHHHHHHHhCCCCCEEEEeCchHHHHHHHHHhc-
Confidence 34666 66788888744 445432 223333 3477888999999999988777888899999999988765
Q ss_pred hhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCch-----hhhc-cCCCEeEEEEEcC-CCCeeeccHHHHHHHH
Q 001989 250 IQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDLK-----DIDY-KSGDVCGVLVQYP-GTEGEVLDYGDFIKNA 322 (985)
Q Consensus 250 ~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~~-----~l~~-l~~~t~~V~v~~p-n~~G~v~di~~I~~~a 322 (985)
+. ++++|++..+-+-+.+ +...++..+.++..++.+ +++. .+++++.|++++. |.+|.+.|+++|+++|
T Consensus 71 ~~--~g~~vlv~~~G~f~~~--~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~~~h~eTstG~~~~i~~i~~~~ 146 (348)
T d1iuga_ 71 FA--PGERVLVPVYGKFSER--FYEIALEAGLVVERLDYPYGDTPRPEDVAKEGYAGLLLVHSETSTGALADLPALARAF 146 (348)
T ss_dssp CC--TTCEEEEEECSHHHHH--HHHHHHHTTCEEEEEECCTTCCCCTTTSCCSSCSEEEEESEETTTTEECCHHHHHHHH
T ss_pred cc--ccccceeecchHHHHH--HHHHHHhcCcccccccccCCCccccccccccCCCeeEEEecchhhhhhccHHHHHHHH
Confidence 22 7888877766543322 223345567777665432 2223 4567788888775 7899999999999999
Q ss_pred HhCC--cEEEEEecCccccCC-CCCCcccceEEEecC-ccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCc
Q 001989 323 HANG--VKVVMATDLLALTIL-KPPGELGADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKP 398 (985)
Q Consensus 323 ~~~g--alliV~a~~~~lg~l-~~~~~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~ 398 (985)
|+++ ++++|++ ..++|.. .+..+||+|++++++ |+|++| ||+|++++|++++++++++
T Consensus 147 ~~~~~~~l~~vDa-vss~g~~~i~~d~~~iD~~~~~sqK~l~gp-----pG~~~v~~s~~~le~~~~~------------ 208 (348)
T d1iuga_ 147 KEKNPEGLVGADM-VTSLLVGEVALEAMGVDAAASGSQKGLMCP-----PGLGFVALSPRALERLKPR------------ 208 (348)
T ss_dssp HHHCTTCEEEEEC-TTTBTTBCCCSGGGTCSEEEEESSSTTCCC-----SCEEEEEECHHHHHTCCCC------------
T ss_pred Hhhhccceeechh-hhcccccccccccccCCEEEeccccceecC-----CceeeeeechHHHhhhccc------------
Confidence 8875 6777754 4566654 456889999999999 667554 7899999999999888653
Q ss_pred ceeeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCCCcc-e
Q 001989 399 ALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFFD-T 477 (985)
Q Consensus 399 ~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~~~~-~ 477 (985)
+|++++...-+.. ++..|++....+.++++.+++ ..+..+|.+.. ++.....+.++..+++.| +++..+...+ .
T Consensus 209 ~~~~dl~~~~~~~-~~~~~~~Tp~v~~i~~l~~aL--~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g-l~~~~~~~s~~v 283 (348)
T d1iuga_ 209 GYYLDLARELKAQ-KEGESAWTPAINLVLAVAAVL--EEVLPRLEEHL-ALKAWQNALLYGVGEEGG-LRPVPKRFSPAV 283 (348)
T ss_dssp SSTTCHHHHHHHH-TTTCCSSCCCHHHHHHHHHHH--HHHGGGHHHHH-HHHHHHHHHHHHHHHHTT-CEESCSSBCTTC
T ss_pred ccccchhhhhhhh-ccCcccccccchHHHHHHHHH--HHHHHHHhHHH-HHHHHHHHHHhhhhhhhh-hccChhhcCCeE
Confidence 2344432111111 123344444447788888876 44445565554 333444556667667767 8887543333 3
Q ss_pred EEEecCC---HHHHHHHHHHcCceeee----ecCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 478 VKVKCAD---AHAIASAAYKIEMNLRV----VDSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 478 ~~~~~~~---~~~v~~~L~~~GI~~~~----~~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
++|..|+ ..++.+.|.++||.+.. +.+..+||+..-+++.+|+++++++|++
T Consensus 284 ~~~~~P~g~~~~~~~~~l~~~gi~i~~G~~~l~~~~~RIg~mG~~~~~d~~~~~~~l~~ 342 (348)
T d1iuga_ 284 AAFYLPEGVPYARVKEAFAQRGAVIAGGQGPLKGKVFRLSLMGAYDRYEALGVAGMFRE 342 (348)
T ss_dssp EEEECCTTCCHHHHHHHHHTTTEECEECCGGGTTTEEEECCCSSCCHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHCCeEEEcCccccCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 5677764 78999999999998743 2245799997768999999999999984
|
| >d1fc4a_ c.67.1.4 (A:) 2-amino-3-ketobutyrate CoA ligase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 2-amino-3-ketobutyrate CoA ligase species: Escherichia coli [TaxId: 562]
Probab=99.81 E-value=1.9e-19 Score=204.46 Aligned_cols=300 Identities=14% Similarity=0.168 Sum_probs=205.4
Q ss_pred hhhhhHHHHHHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEE
Q 001989 625 DQAQGYQEMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKI 704 (985)
Q Consensus 625 e~~~G~~~~~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~v 704 (985)
....|....++++++.+++++|.+.+ ++++||.+|+.+++.++. .+++.|++....|.+....+...+.++
T Consensus 83 r~~~g~~~~~~~lE~~lA~~~g~e~a-l~~~SG~~An~~~i~~l~--------~~~d~i~~d~~~h~s~~~G~~~~~a~~ 153 (401)
T d1fc4a_ 83 RFICGTQDSHKELEQKLAAFLGMEDA-ILYSSCFDANGGLFETLL--------GAEDAIISDALNHASIIDGVRLCKAKR 153 (401)
T ss_dssp HHHHCCBHHHHHHHHHHHHHHTCSEE-EEESCHHHHHHTTHHHHC--------CTTCEEEEETTCCHHHHHHHHTSCSEE
T ss_pred eeeccCcHHHHHHHHHHHHhhcCCce-EEecchhhhhHHHHHHhc--------CCCcEEEeCCcchHHHHccccccCceE
Confidence 34456667788999999999999865 567889988866655432 467889888888888777788889999
Q ss_pred EEEcCCCCCCCCHHHHHHHHHh---cCCCEEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCCC-C-
Q 001989 705 VSVGTDAKGNINIEELRKAAEA---NRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLT-S- 778 (985)
Q Consensus 705 v~v~~d~~g~iD~e~L~~~i~~---~~~~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~-~- 778 (985)
..++.+ |++++++++++ ..+.+++|++... +..|.+. |+++|.++|+++|+++++|++|..+..+.. .
T Consensus 154 ~~~~~~-----d~~~le~~~~~~~~~~~~~~liv~egv~s~~G~~~-~L~~l~~L~~~~~a~LivDeah~~g~~g~~G~G 227 (401)
T d1fc4a_ 154 YRYANN-----DMQELEARLKEAREAGARHVLIATDGVFSMDGVIA-NLKGVCDLADKYDALVMVDDSHAVGFVGENGRG 227 (401)
T ss_dssp EEECTT-----CHHHHHHHHHHHHHTTCSSEEEEEESEETTTTEEC-CHHHHHHHHHHTTEEEEEECTTTTTTSSTTSCC
T ss_pred EEEcCC-----ChHHHHHHHHHhhhcccCceEEEEcCCCCCCCchh-hhhHHHHHHhhcCcEEEehhhhccccccCCCCc
Confidence 888864 88888887753 2345667777664 4578776 899999999999999999999964332210 0
Q ss_pred ----CC-ccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHH
Q 001989 779 ----PG-YIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALIL 853 (985)
Q Consensus 779 ----pg-~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~ 853 (985)
.+ .-.+|++++++.|.| ||+++|+++.++++.+++....-+ ...+... ++..+
T Consensus 228 ~~~~~~~~~~~dii~~tl~Ka~------gg~~Gg~v~g~~~~~~~l~~~~~~-----------~~~s~~l-----~p~~~ 285 (401)
T d1fc4a_ 228 SHEYCDVMGRVDIITGTLGKAL------GGASGGYTAARKEVVEWLRQRSRP-----------YLFSNSL-----APAIV 285 (401)
T ss_dssp HHHHTTCTTCCSEEEEESSSTT------CSSSCEEEEECHHHHHHHHHHCHH-----------HHHSCCC-----CHHHH
T ss_pred cchhccCCCCCeEEEeeccccc------ccCCcccccCCHHHHHHHHcCChh-----------hhhcCCC-----CHHHH
Confidence 01 113799999999987 466778999888777654311000 0000111 12223
Q ss_pred HHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCC
Q 001989 854 PISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGF 932 (985)
Q Consensus 854 ~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi 932 (985)
.++...++.+.. ..+..++..++.+++++.+.+ ++.+. +...+.. .+.+. ......++.++|.++||
T Consensus 286 ~aa~~~l~~~~~--~~~~~~~l~~~~~~~~~~l~~~g~~~~--~~~~pIv---~v~~~-----~~~~a~~~~~~L~~~Gi 353 (401)
T d1fc4a_ 286 AASIKVLEMVEA--GSELRDRLWANARQFREQMSAAGFTLA--GADHAII---PVMLG-----DAVVAQKFARELQKEGI 353 (401)
T ss_dssp HHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHHHHTTCCBC--CSSSSEE---EEEEE-----CHHHHHHHHHHHHHTTE
T ss_pred HHHHhhhccccc--CHHHHHHHHHHHHHHHhhhcccCCccC--CCCCCEE---EEEEC-----CHHHHHHHHHHHHHCCc
Confidence 333344443322 245566788899999999986 55543 2112322 22222 01235689999999999
Q ss_pred ccCCCCCCC----CCEEEEeccCCCCHHHHHHHHccCChhHHHHhhc
Q 001989 933 HGPTMSWPV----PGTLMIEPTESESKSWTGIVMLSSPSEKKLHRLK 975 (985)
Q Consensus 933 ~~~~~~~p~----~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~~ 975 (985)
++..+.+|. ...||++++..+|+||||+ ++++|+++.+++.
T Consensus 354 ~v~~i~~PtVp~g~~~lRi~~~a~hT~edId~--~v~al~ev~~~lg 398 (401)
T d1fc4a_ 354 YVTGFFYPVVPKGQARIRTQMSAAHTPEQITR--AVEAFTRIGKQLG 398 (401)
T ss_dssp ECCEECTTSSCTTCEEEEEECCTTCCHHHHHH--HHHHHHHHHHHTT
T ss_pred eEEeECCCCCCCCCceEEEEECCCCCHHHHHH--HHHHHHHHHHHhC
Confidence 998777762 2459999999999999999 8899999988763
|
| >d2bwna1 c.67.1.4 (A:2-397) 5-aminolevulinate synthase {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 5-aminolevulinate synthase species: Rhodobacter capsulatus [TaxId: 1061]
Probab=99.81 E-value=3.4e-19 Score=200.65 Aligned_cols=295 Identities=16% Similarity=0.172 Sum_probs=199.0
Q ss_pred hhhHHHHHHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEE
Q 001989 627 AQGYQEMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVS 706 (985)
Q Consensus 627 ~~G~~~~~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~ 706 (985)
..|....++++|+.+++++|.+.+ +.++||..|+.+++.++... .+++.|+.....|.+....++..+.+++.
T Consensus 85 ~~G~~~~h~~LE~~lA~~~g~e~a-ll~~sG~~An~~~i~~l~~~------~~~d~i~~D~~~Hasi~~g~~ls~a~~~~ 157 (396)
T d2bwna1 85 ISGTTAYHRRLEAEIAGLHQKEAA-LVFSSAYNANDATLSTLRVL------FPGLIIYSDSLNHASMIEGIKRNAGPKRI 157 (396)
T ss_dssp TBCCBHHHHHHHHHHHHHTTCSEE-EEESCHHHHHHHHHHHHHHH------STTCEEEEETTCCHHHHHHHHHSCCCEEE
T ss_pred ccCCchHHHHHHHHHHHHhCCCce-eeeecchHHHHHHHHHHhcc------cCCCceeehhhhhhccchhhhccccCceE
Confidence 455667788999999999999865 55678888776555544221 25676777877777777778889999999
Q ss_pred EcCCCCCCCCHHHHHHHHHhcCC-CEEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCC----
Q 001989 707 VGTDAKGNINIEELRKAAEANRD-NLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPG---- 780 (985)
Q Consensus 707 v~~d~~g~iD~e~L~~~i~~~~~-~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg---- 780 (985)
++++ |+++++++++...+ +.+.|++... +..|.+- |+++|.++++++|++++||.||.++..| ..|
T Consensus 158 f~Hn-----d~~~l~~l~~~~~~~~~~~iv~egvySmdGd~a-pl~~l~~L~~~y~~~L~vDeAHs~Gv~G--~~G~G~~ 229 (396)
T d2bwna1 158 FRHN-----DVAHLRELIAADDPAAPKLIAFESVYSMDGDFG-PIKEICDIAEEFGALTYIDEVHAVGMYG--PRGAGVA 229 (396)
T ss_dssp ECTT-----CHHHHHHHHHHSCTTSCEEEEEESBCTTTCCBC-CHHHHHHHHHHHTCEEEEECTTTTTTSS--TTSCCHH
T ss_pred eecc-----hHHHhhhHHhhhcccCceeEEEEeeccCccccc-ccHhHHHHhhhhcceeeeccceeeeeec--cccccch
Confidence 9875 89999988875433 4456666554 5689887 8999999999999999999999755533 222
Q ss_pred -----ccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHH
Q 001989 781 -----YIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPI 855 (985)
Q Consensus 781 -----~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~ 855 (985)
...+|++++++.|.|+. .+|++++++.+.+++.... +....++.. ++..+++
T Consensus 230 ~~~~~~~~~di~~gTlsKa~g~-------~Gg~v~~~~~~i~~l~~~~-----------~~~ifStal-----pp~~~aa 286 (396)
T d2bwna1 230 ERDGLMHRIDIFNGTLAKAYGV-------FGGYIAASARMVDAVRSYA-----------PGFIFSTSL-----PPAIAAG 286 (396)
T ss_dssp HHHTCGGGCSEEEEESSSTTCS-------CCEEEEECHHHHHHHHHHC-----------HHHHTSBCC-----CHHHHHH
T ss_pred hhcCCceeeeeeeecccccccc-------cccccchhHHHHHHHHhhc-----------chhhhcccC-----cHHHHHH
Confidence 12369999999998842 3478998887766553110 000011111 1222333
Q ss_pred HHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHH-HCCCc
Q 001989 856 SYTYIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLM-DYGFH 933 (985)
Q Consensus 856 a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~-~~Gi~ 933 (985)
+.+.+..+..+..++...+...+.+++++.|.+ ++.+.. ...+. +.+-+. .......++++|. ++||+
T Consensus 287 ~~~al~i~~~~~~~~~r~~l~~~~~~~~~~l~~~g~~~~~--~~spI---vpv~ig-----~~~~~~~~a~~lL~e~Gi~ 356 (396)
T d2bwna1 287 AQASIAFLKTAEGQKLRDAQQMHAKVLKMRLKALGMPIID--HGSHI---VPVVIG-----DPVHTKAVSDMLLSDYGVY 356 (396)
T ss_dssp HHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHTCCBCC--CSSSC---EEEECC-----CHHHHHHHHHHHHHHHCEE
T ss_pred HHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhcCCCcCC--CCCCE---EEEEeC-----CHHHHHHHHHHHHHhCCEE
Confidence 344455554333344455677889999999987 666532 11232 223222 0123567788755 68999
Q ss_pred cCCCCCC-C---CCEEEEeccCCCCHHHHHHHHccCChhHHH
Q 001989 934 GPTMSWP-V---PGTLMIEPTESESKSWTGIVMLSSPSEKKL 971 (985)
Q Consensus 934 ~~~~~~p-~---~~~lris~t~~~t~eeId~~~~~~~l~~~~ 971 (985)
+..+.+| + ...+||+++..+|+||||+ ++++|++++
T Consensus 357 v~~i~~PtVp~g~~rlRi~lsa~ht~edId~--l~~~L~~iw 396 (396)
T d2bwna1 357 VQPINFPTVPRGTERLRFTPSPVHDLKQIDG--LVHAMDLLW 396 (396)
T ss_dssp CCEECTTTSCTTCCEEEECCCTTSCHHHHHH--HHHHHHHHC
T ss_pred EEEECCCcCCCCCeeEEEEeCccCCHHHHHH--HHHHHHHhC
Confidence 9887777 3 2579999999999999999 778887764
|
| >d1vjoa_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]
Probab=99.80 E-value=9.1e-19 Score=196.75 Aligned_cols=314 Identities=15% Similarity=0.134 Sum_probs=199.8
Q ss_pred hhHHHHHHHHHHHHHHHhCCCc--cceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHH--HHHCCcE
Q 001989 628 QGYQEMFNNLGEWLCTITGFDS--FSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPAT--AAMCGMK 703 (985)
Q Consensus 628 ~G~~~~~~e~~~~la~l~G~~~--~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~--a~~~G~~ 703 (985)
+.+.++++++++.+++++|.+. ..++.++|++++++++..+. .+++++++....|...... +...+..
T Consensus 47 ~ef~~i~~~~r~~l~~ll~~~~~~~i~~~g~gT~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (377)
T d1vjoa_ 47 PAFLALMDEIQSLLRYVWQTENPLTIAVSGTGTAAMEATIANAV--------EPGDVVLIGVAGYFGNRLVDMAGRYGAD 118 (377)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCCSCEEEESSCHHHHHHHHHHHHC--------CTTCEEEEEESSHHHHHHHHHHHHTTCE
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCeEEEEcCcHHHHHHHHHHhcc--------ccccccceeeechhhhhhhhhhhhhccc
Confidence 3456789999999999999875 33555777777765544321 3567788766555443322 4456777
Q ss_pred EEEEcCCCCCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCcc
Q 001989 704 IVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYI 782 (985)
Q Consensus 704 vv~v~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~ 782 (985)
...+..+.+...+.+..+..... ++++.|.+++. |.+|++. |+++|+++||++|+++++|++|+.+...+ +...+
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~tg~~~-~i~~i~~~~~~~g~~~~vDa~~~~g~~~~-~~~~~ 194 (377)
T d1vjoa_ 119 VRTISKPWGEVFSLEELRTALET--HRPAILALVHAETSTGARQ-PLEGVGELCREFGTLLLVDTVTSLGGVPI-FLDAW 194 (377)
T ss_dssp EEEEECCTTCCCCHHHHHHHHHH--HCCSEEEEESEETTTTEEC-CCTTHHHHHHHHTCEEEEECTTTTTTSCC-CTTTT
T ss_pred ccccccCCCCcccchhhhhhhhc--Ccceeeeeeeeeccceeee-chhhhhhhhhhccceEEEecchhhhhhhh-ccccc
Confidence 77676655556666666665542 56667777764 5799998 89999999999999999999996554433 56788
Q ss_pred CCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccC---CCC---CCC-CCCCCCCCCCCcchhhhHHHHH
Q 001989 783 GADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVST---GGI---PAP-EKSQPLGTIAAAPWGSALILPI 855 (985)
Q Consensus 783 g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~---~~~---~~~-~~~~~~~~i~s~~~g~~~~~~~ 855 (985)
++|+++++.||+++ |+||+|+++.++...+.......+.. ... ... .....+..... . .....
T Consensus 195 ~~d~~~~s~~K~~~-----gp~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-~~~~~ 264 (377)
T d1vjoa_ 195 GVDLAYSCSQKGLG-----CSPGASPFTMSSRAIEKLQRRRTKVANWYLDMNLLGKYWGSERVYHHTAP----I-NLYYA 264 (377)
T ss_dssp TCSEEECCSSSTTC-----SCSSCEEEEECHHHHHHHHTCSSCCSCSTTCHHHHHHHHSTTCCCCSCCC----H-HHHHH
T ss_pred ccceeeeccccccc-----CCCEEEEecchhhHHhhhhccCCCCcceeeccchhhhccCcccccccccc----e-echhh
Confidence 99999999999984 45688899988755432211110000 000 000 00011111111 1 11111
Q ss_pred HHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHH-CCCc
Q 001989 856 SYTYIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMD-YGFH 933 (985)
Q Consensus 856 a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~-~Gi~ 933 (985)
..+.+..+..+|.....++..++++++.+.|.+ ++.+... +.......+.+.++ .+.+..++.+.|.+ +||.
T Consensus 265 l~~~~~~~~~~g~~~~~~~~~~~~~~l~~~l~~~~~~~~~~-~~~rs~~v~~~~~p-----~~~~~~~l~~~L~~~~gI~ 338 (377)
T d1vjoa_ 265 LREALRLIAQEGLANCWQRHQKNVEYLWERLEDIGLSLHVE-KEYRLPTLTTVCIP-----DGVDGKAVARRLLNEHNIE 338 (377)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCBSSC-GGGBCSSEEEEECC-----TTCCHHHHHHHHHHHHCEE
T ss_pred hHHHHhhhhhcCchHHHHHHHHHhhhhhhhhhccCceeecC-hHhcCCeEEEEECC-----CCCCHHHHHHHHHhcCCEE
Confidence 223344455667777777888889999999976 5444322 11111112345554 36789999999865 5988
Q ss_pred cCCCCCC-CCCEEEEe-ccCCCCHHHHHHHHccCChhHHH
Q 001989 934 GPTMSWP-VPGTLMIE-PTESESKSWTGIVMLSSPSEKKL 971 (985)
Q Consensus 934 ~~~~~~p-~~~~lris-~t~~~t~eeId~~~~~~~l~~~~ 971 (985)
+..-..+ -++.+||+ +..++|.||||+ ++++|++++
T Consensus 339 v~~G~~~~~~~~~Ris~~g~~~t~edi~~--lv~al~~~l 376 (377)
T d1vjoa_ 339 VGGGLGELAGKVWRVGLMGFNSRKESVDQ--LIPALEQVL 376 (377)
T ss_dssp CEECCGGGTTTEEEEECCGGGCSHHHHHH--HHHHHHHHH
T ss_pred EecCcccccCCEEEEecCcCCCCHHHHHH--HHHHHHHHh
Confidence 6431112 24789999 467889999999 788888876
|
| >d1bs0a_ c.67.1.4 (A:) PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) species: Escherichia coli [TaxId: 562]
Probab=99.80 E-value=5.6e-19 Score=199.38 Aligned_cols=294 Identities=13% Similarity=0.123 Sum_probs=198.7
Q ss_pred hhhhHHHHHHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEE
Q 001989 626 QAQGYQEMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIV 705 (985)
Q Consensus 626 ~~~G~~~~~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv 705 (985)
...|..+.+.++|+.+++++|.+.+ +.++||.+++.+++.++. .+++.|++....|.+.....+..+.+++
T Consensus 77 ~~~g~~~~~~~lE~~LA~~~g~e~a-l~~~SG~~an~~~i~al~--------~~~d~v~~d~~~h~si~~g~~~~~~~~~ 147 (383)
T d1bs0a_ 77 HVSGYSVVHQALEEELAEWLGYSRA-LLFISGFAANQAVIAAMM--------AKEDRIAADRLSHASLLEAASLSPSQLR 147 (383)
T ss_dssp TTTCCCHHHHHHHHHHHHHHTCSEE-EEESCHHHHHHHHHHHHC--------CTTCEEEEETTCCHHHHHHHHTSSSEEE
T ss_pred cccCcchHHHHHHHHHHHhcCCCce-EEecccchhhHHHHHhhc--------CCCceEEeeccccHHHhhccccCCCcce
Confidence 3456667888999999999998865 556788887765554432 4678888888888777777788899999
Q ss_pred EEcCCCCCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCC----
Q 001989 706 SVGTDAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPG---- 780 (985)
Q Consensus 706 ~v~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg---- 780 (985)
.++.+ |+++|++.+.+.+++.++|++..+ +..|.+. |+++|.++|+++|++++||++|..+..+-.-.|
T Consensus 148 ~~~hn-----d~~~le~~l~~~~~~~~~vv~e~v~s~~G~i~-pl~~l~~l~~~~~~~livDeah~~gv~G~~g~G~~~~ 221 (383)
T d1bs0a_ 148 RFAHN-----DVTHLARLLASPCPGQQMVVTEGVFSMDGDSA-PLAEIQQVTQQHNGWLMVDDAHGTGVIGEQGRGSCWL 221 (383)
T ss_dssp EECTT-----CHHHHHHHHHSCCSSCEEEEEESBCTTTCCBC-CHHHHHHHHHHTTCEEEEECTTTTTTSSGGGCCHHHH
T ss_pred Eecch-----HHHHHHHHhcccCCCceEEEecCCCCCCCccc-chhHHHHHHHhcCcEEEeecceeeeecCCcccchHHH
Confidence 99974 999999999877677788888776 4689887 899999999999999999999964433321111
Q ss_pred -ccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHH
Q 001989 781 -YIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTY 859 (985)
Q Consensus 781 -~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~ 859 (985)
....|+++.++.|.++ + .+|+++++....+++... +. ....+... ++..++++.+.
T Consensus 222 ~~~~~~~~~~t~~ka~g------~-~Gg~v~~~~~~~~~l~~~--~~---------~~~~s~~~-----~p~~~aa~~~a 278 (383)
T d1bs0a_ 222 QKVKPELLVVTFGKGFG------V-SGAAVLCSSTVADYLLQF--AR---------HLIYSTSM-----PPAQAQALRAS 278 (383)
T ss_dssp TTCCCSEEEEESSSTTS------S-CCEEEEECHHHHHHHHHH--CH---------HHHSSBCC-----CHHHHHHHHHH
T ss_pred cCCcccccccccccccc------c-cccccccchhHHHHHHhh--ch---------hhhhcccc-----cchHHHHHHHH
Confidence 1235777776667653 2 346777776655444211 00 00001111 12223333444
Q ss_pred HHHhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCC
Q 001989 860 IAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMS 938 (985)
Q Consensus 860 l~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~ 938 (985)
+..+.........++..++..++.+.|.+ ++.+. +...+.. .+.+.- ...+.++.++|.++||++..+.
T Consensus 279 ~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~g~~~~--~~~s~Ii-~v~~g~-------~~~a~~~~~~L~~~Gi~v~~~~ 348 (383)
T d1bs0a_ 279 LAVIRSDEGDARREKLAALITRFRAGVQDLPFTLA--DSCSAIQ-PLIVGD-------NSRALQLAEKLRQQGCWVTAIR 348 (383)
T ss_dssp HHHHHSHHHHHHHHHHHHHHHHHHHHHTTSSCEEC--SCCSSBC-CEEEES-------HHHHHHHHHHHHHTTEECCEEC
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHhcCCccC--CCCCCEE-EEEECC-------HHHHHHHHHHHHHCCceEEEEc
Confidence 45444444455666778889999999986 55432 2112222 122321 1235689999999999998777
Q ss_pred CCC----CCEEEEeccCCCCHHHHHHHHccCChhH
Q 001989 939 WPV----PGTLMIEPTESESKSWTGIVMLSSPSEK 969 (985)
Q Consensus 939 ~p~----~~~lris~t~~~t~eeId~~~~~~~l~~ 969 (985)
+|. ...+||+++..+|+||||+ ++++|+.
T Consensus 349 ~PtVp~g~~~lRi~~~a~ht~edid~--l~~~L~~ 381 (383)
T d1bs0a_ 349 PPTVPAGTARLRLTLTAAHEMQDIDR--LLEVLHG 381 (383)
T ss_dssp TTSSCTTCEEECCBCCTTCCHHHHHH--HHHHHHH
T ss_pred CCCCCCCCceEEEEeCCCCCHHHHHH--HHHHHHh
Confidence 772 2469999999999999999 6666654
|
| >d1rv3a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=99.80 E-value=1.8e-18 Score=194.17 Aligned_cols=306 Identities=16% Similarity=0.159 Sum_probs=206.0
Q ss_pred HHHHHHHHhCCC----ccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHH----------HHHCCc
Q 001989 637 LGEWLCTITGFD----SFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPAT----------AAMCGM 702 (985)
Q Consensus 637 ~~~~la~l~G~~----~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~----------a~~~G~ 702 (985)
+.+...++||.+ .+++++.||+.|+.++++++. .++|+|+..+..||.|... .....+
T Consensus 82 a~~ra~~lF~~~~~~~~anVqp~SGs~An~av~~all--------~pgD~im~~~l~~GGHlshg~~~~~~~~~~~~~~~ 153 (470)
T d1rv3a_ 82 CQKRALQAYGLDPQCWGVNVQPYSGSPANFAVYTALV--------EPHGRIMGLDLPDGGHLTHGFMTDKKKISATSIFF 153 (470)
T ss_dssp HHHHHHHHTTCCTTTEEEECCCSSHHHHHHHHHHHHT--------CTTCEEEEECGGGTCCGGGCCBCSSCBCSHHHHHS
T ss_pred HHHHHHHHhCCChhhccccccccCCccHHHHHHHHhc--------CCCCeEeeeccccCCcccccccccCCCccccccee
Confidence 345568999987 368999999999988877664 5889999877666655322 222346
Q ss_pred EEEEEcCCCC-CCCCHHHHHHHHHhcCCCEEEEEEEcCCCccccccCHHHHHHHHHHcCCEEEEEccccccc---cCCCC
Q 001989 703 KIVSVGTDAK-GNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQ---VGLTS 778 (985)
Q Consensus 703 ~vv~v~~d~~-g~iD~e~L~~~i~~~~~~t~~Vvv~~pn~~G~i~~di~eI~~la~~~galliVD~a~~~~~---~~l~~ 778 (985)
+.+.++++++ +.+|.|++++...+++|+ +|++...++.=.+ |++++.++|++.|++|++|.+|..++ +.+.+
T Consensus 154 ~~~~y~v~~~~~~IDyd~l~~~a~~~kPk--lIi~G~S~y~r~~--d~~~~reIad~vga~l~~D~aH~aGLIA~g~~~s 229 (470)
T d1rv3a_ 154 ESMAYKVNPDTGYIDYDRLEENARLFHPK--LIIAGTSCYSRNL--DYGRLRKIADENGAYLMADMAHISGLVVAGVVPS 229 (470)
T ss_dssp EEEEECBCTTTCSBCHHHHHHHHHHHCCS--EEEECCSSCCSCC--CHHHHHHHHHHTTCEEEEECTTTHHHHHHTSSCC
T ss_pred EeeEEEEecccCcccHHHHHHHHHhhCcc--eEeechhhccccC--CHHHHHHHHhccCCeEEecchhhhhhccccccCC
Confidence 8889999876 899999999999865554 5666554444444 79999999999999999999996544 33567
Q ss_pred CCccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHH
Q 001989 779 PGYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYT 858 (985)
Q Consensus 779 pg~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a 858 (985)
|-.. +||+++++||+| +||.+|+|.++++....-|..--....+..+.-....++.+.+++. ....++.|.+
T Consensus 230 Pl~~-aDvvt~tTHKtl------rGPrgGiI~~~~~~~~~~~~~~~~~~~~~~~~i~~avFPg~qggph-~~~IAa~Ava 301 (470)
T d1rv3a_ 230 PFEH-CHVVTTTTHKTL------RGCRAGMIFYRRGVRSVDPKTGKEILYNLESLINSAVFPGLQGGPH-NHAIAGVAVA 301 (470)
T ss_dssp GGGT-CSEEEEESSGGG------CCCSCEEEEEECSBCC-------CCBCCHHHHHHHHHTTTTCCSCC-HHHHHHHHHH
T ss_pred hhhe-eeeeeeehhhhc------cCCcceEEEEccccccccccccchhHHHHHHHHhhhcCccccccch-hhHHHHHHHH
Confidence 7654 799999999999 6899999999875432211100000000000000000111111111 1122334445
Q ss_pred HHHHhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCC
Q 001989 859 YIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTM 937 (985)
Q Consensus 859 ~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~ 937 (985)
....+.++ ++++++++.+|++.|++.|.+ |+.+...+ ...|.+++++.. .|+++.++.+.|.+.||.++..
T Consensus 302 ~~ea~~~~-fk~Ya~qvv~NAk~La~~L~~~G~~v~~gg---TdnHlvlvdl~~----~g~~g~~ae~~Le~~gI~~Nkn 373 (470)
T d1rv3a_ 302 LKQAMTPE-FKEYQRQVVANCRALSAALVELGYKIVTGG---SDNHLILVDLRS----KGTDGGRAEKVLEACSIACNKN 373 (470)
T ss_dssp HHHHTSHH-HHHHHHHHHHHHHHHHHHHHHTTCEEGGGS---CSSSEEEEEGGG----GTCCHHHHHHHHHHTTEECEEE
T ss_pred HHHhcChH-HHHHHHHHHHHHHHHHHHHHhCCceeccCC---CCCceEEEeecc----cCCcHHHHHHHHHHcCcEECCC
Confidence 55555555 688999999999999999987 88886543 456778888863 3778999999999999987632
Q ss_pred C--C---C-CCCEEEEeccC----CCCHHHHHHHHccCChhHHHH
Q 001989 938 S--W---P-VPGTLMIEPTE----SESKSWTGIVMLSSPSEKKLH 972 (985)
Q Consensus 938 ~--~---p-~~~~lris~t~----~~t~eeId~~~~~~~l~~~~~ 972 (985)
. + | .++.|||.-.+ ...++|+.+ ..+.|.++++
T Consensus 374 ~iP~D~~~~~~sGiRiGT~alTtrG~~e~dm~~--iA~~I~~~l~ 416 (470)
T d1rv3a_ 374 TCPGDKSALRPSGLRLGTPALTSRGLLEKDFQK--VAHFIHRGIE 416 (470)
T ss_dssp CCSSCSCTTSCCEEEEECHHHHHTTCCHHHHHH--HHHHHHHHHH
T ss_pred cCCCCCCCCCCCeeEecCHHHHhCCCCHHHHHH--HHHHHHHHHH
Confidence 1 1 2 35789998764 467788888 5555555553
|
| >d1js3a_ c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Pyridoxal-dependent decarboxylase domain: DOPA decarboxylase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.79 E-value=1.9e-17 Score=191.38 Aligned_cols=359 Identities=10% Similarity=0.006 Sum_probs=223.7
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhcCCC-cc--ceecCCCCCCCCCcHHHHHHHHhCCccccccCCChhhHhhhHHHHHHHH
Q 001989 140 KFSKFDEGLTESQMIEHMQKLASMNK-VY--KSFIGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNF 216 (985)
Q Consensus 140 ~lp~~~~~~se~e~~~~~~~l~~~n~-~~--~~~lG~g~y~~~~p~~v~~~i~~~~~~~t~~~pyq~e~sqg~l~~i~e~ 216 (985)
.+| ..+.+..++++++++.-.... .+ ..|.|--.-+...|+.+.+-+.. ...-..+..+.+....++..+.
T Consensus 45 ~~P--~~g~~~~~~l~~~~~~i~~~~~~~~~P~f~~~~~~~~~~~~~l~~~~~~----~~n~n~~~~~~sp~~t~iE~~v 118 (476)
T d1js3a_ 45 TAP--QEPDTFEDILQDVEKIIMPGVTHWHSPYFFAYFPTASSYPAMLADMLCG----AIGCIGFSWAASPACTELETVM 118 (476)
T ss_dssp SCC--SSCCCHHHHHHHHHHTTGGGCCCTTSTTBCSSSCCCCCHHHHHHHHHHH----HHCCCCSSGGGCHHHHHHHHHH
T ss_pred ccC--cCCCCHHHHHHHHHHHHhCCCCCCCCCCeeEeCCCCCCHHHHHHHHHHH----hhcccccchhhhhhHHHHHHHH
Confidence 566 567899999999988764432 12 23444332222244444422221 1111333446677777888888
Q ss_pred HHHHHHhcCCCCc---------ceeeccchHHHHHHHHH-Hhhhh------cC---------CCCEEEEcCCCChhHHHH
Q 001989 217 QTMIADLTGLPMS---------NASLLDEGTAAAEAMAM-CNNIQ------KG---------KKKTFIIASNCHPQTIDI 271 (985)
Q Consensus 217 q~~ia~L~g~~~~---------~~sl~~~~ta~~ea~~~-a~~~~------~~---------~g~~Vlv~~~~H~s~~~~ 271 (985)
-.++++++|.+.+ ...+++|||.+....++ |+... +. ++-.|++++..|.|+.+.
T Consensus 119 ~~wl~~l~g~p~~~~~~~~~~~~G~~~~Ggs~anl~al~~AR~~~~~~~~~~~~g~~~~~~~~~~vv~~s~~~H~Si~ka 198 (476)
T d1js3a_ 119 MDWLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTKVVRRLQAASPGLTQGAVLEKLVAYASDQAHSSVERA 198 (476)
T ss_dssp HHHHHHHTTCCGGGCCTTTCSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHEEEEEETTCCHHHHHH
T ss_pred HHHHHHHhCCCcccccCCCCCCCceECCcHHHHHHHHHHHHHHHHHHhhcccccCcccccccCceEEEecccccHHHHHH
Confidence 9999999999753 34577888765544443 33210 00 122588999999999999
Q ss_pred HHHhhcCCCeEEEEeCc--------hhhhc-cCC------CEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecC
Q 001989 272 CITRADGFDIKVVVSDL--------KDIDY-KSG------DVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDL 335 (985)
Q Consensus 272 ~~~~a~~~gi~v~~v~~--------~~l~~-l~~------~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~ 335 (985)
+.- .|+.++.++. ++|++ +++ .+.+|+.+.+ +.+|.++||++|+++|+++|++++||+-.
T Consensus 199 ~~~----lGl~~~~v~~d~~~~md~~~L~~~i~~~~~~g~~p~~VvataGtt~~G~iDpl~~I~~i~~~~~~wlHVDAA~ 274 (476)
T d1js3a_ 199 GLI----GGVKLKAIPSDGKFAMRASALQEALERDKAAGLIPFFVVATLGTTSCCSFDNLLEVGPICHEEDIWLHVDAAY 274 (476)
T ss_dssp HHH----HTCEEEEECCCTTSCCCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHTTCEEEEECTT
T ss_pred HHh----cCceEEEeccCCCCCcCHHHHHHHHHHHHhcCCCcEEEeecCCCccceeeccHHHHHHHHHhcCcEEEEeccc
Confidence 764 3666666654 34554 422 2466777876 67999999999999999999999996522
Q ss_pred ccccCC-CCC-----CcccceEEEecC-ccccccCCCCCCcEEEEEEchh-hH-hcCC--CceeeeeecCCCC-cce-ee
Q 001989 336 LALTIL-KPP-----GELGADIVVGSA-QRFGVPMGYGGPHAAFLATSQE-YK-RMMP--GRIVGVSIDSSGK-PAL-RV 402 (985)
Q Consensus 336 ~~lg~l-~~~-----~~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~-~~-~~lp--~~~vG~t~d~~g~-~~~-~l 402 (985)
-+...+ ... +--+||-+..+. |+++.|.+ +|++.+|+. .. ..+. +..........+. ..+ ..
T Consensus 275 Gg~~~~~~~~~~~~~gi~~aDSit~d~HK~l~~P~~-----~g~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (476)
T d1js3a_ 275 AGSAFICPEFRHLLNGVEFADSFNFNPHKWLLVNFD-----CSAMWVKRRTDLTGAFKLDPVYLKHSHQGSGLITDYRHW 349 (476)
T ss_dssp GGGGGGSTTTGGGGTTGGGCSEEEECHHHHSSCCSS-----CEEEEESCHHHHHGGGC------------CCSCCCGGGS
T ss_pred chhhhhhcchhhhhcCCcccceeeecCccccccCCc-----ceeecccchHHHHHHHhcChhhhcccccccccccccccc
Confidence 111111 111 123699999999 77777753 467777753 22 1111 1110000000000 000 00
Q ss_pred ecccccccccccccCCCccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCCCcceEEEec
Q 001989 403 AMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDTVKVKC 482 (985)
Q Consensus 403 ~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~~~~~~~~~~ 482 (985)
++ +--||. .++ .+ .+.+..+|.+|++++.++..++++|+.+.|++.++|+++.++.++.|+|+.
T Consensus 350 ~~----~~sr~~---------~al-~l--w~~l~~~G~~g~~~~i~~~~~lA~~l~~~l~~~~~fel~~~p~l~iV~Fr~ 413 (476)
T d1js3a_ 350 QL----PLGRRF---------RSL-KM--WFVFRMYGVKGLQAYIRKHVQLSHEFEAFVLQDPRFEVCAEVTLGLVCFRL 413 (476)
T ss_dssp SS----CSCCCC---------THH-HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTEEECSCCCSSEEEEEE
T ss_pred cc----ccchhh---------HHH-HH--HHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhcCCCeEEECCCceEEEEEEc
Confidence 01 111111 122 11 222578899999999999999999999999999559999888888888886
Q ss_pred CC----HHHHHHHHHHcC-ceeeee-cC--CeEEEEec-cCCCHHHHHHHHHHHhC
Q 001989 483 AD----AHAIASAAYKIE-MNLRVV-DS--NTVTASFD-ETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 483 ~~----~~~v~~~L~~~G-I~~~~~-~~--~~lris~t-~~~t~edId~li~aL~~ 529 (985)
.+ ..++.++|.+.| +++... .. -.+|+++. ..+|++|||.+++.|++
T Consensus 414 ~~~d~~n~~l~~~l~~~G~~~~s~t~~~g~~~lR~~i~n~~Tt~~did~~~~~i~~ 469 (476)
T d1js3a_ 414 KGSDGLNEALLERINSARKIHLVPCRLRGQFVLRFAICSRKVESGHVRLAWEHIRG 469 (476)
T ss_dssp SSCHHHHHHHHHHHHHHTSCBCEEEEETTEEEEEEECCCTTCCHHHHHHHHHHHHH
T ss_pred cCChHHHHHHHHHHHhcCCEEEeeeeECCEEEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 53 567888888777 445332 23 36999987 66889999999999985
|
| >d2a7va1 c.67.1.4 (A:26-488) Serine hydroxymethyltransferase {Human (Homo sapiens), mitochondrial [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Human (Homo sapiens), mitochondrial [TaxId: 9606]
Probab=99.79 E-value=2.2e-18 Score=192.73 Aligned_cols=305 Identities=15% Similarity=0.142 Sum_probs=191.6
Q ss_pred HHHHHHHHhCCCcc----ceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCccc---HHH-----HHHCC--c
Q 001989 637 LGEWLCTITGFDSF----SLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTN---PAT-----AAMCG--M 702 (985)
Q Consensus 637 ~~~~la~l~G~~~~----~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~---~~~-----a~~~G--~ 702 (985)
+.+...++||++.+ ++++.||+.|++++++++. +++|+|+..+..||-| ... ....| +
T Consensus 78 a~~ra~~lF~~~~a~w~vNVqp~SGs~An~av~~all--------~pgD~Im~l~l~~GGHlshg~~~~~~~~~~~g~~~ 149 (463)
T d2a7va1 78 CQRRALEAFDLDPAQWGVNVQPYSGSPANLAVYTALL--------QPHDRIMGLDLPDGGHLTHGYMSDVKRISATSIFF 149 (463)
T ss_dssp HHHHHHHHTTCCTTTEEEECCCSSHHHHHHHHHHHHC--------CSCEECCC---------------------------
T ss_pred HHHHHHHHhCCCchhccCCccccccHHHHHHHHHHHc--------CCCceEEeeccCcCcccccccccccccccceeeEe
Confidence 45668899999975 7999999999988777663 5889998766666644 211 12233 3
Q ss_pred EEEEEcCCC-CCCCCHHHHHHHHHhcCCCEEEEEEEcCCCccccccCHHHHHHHHHHcCCEEEEEccccccc---cCCCC
Q 001989 703 KIVSVGTDA-KGNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQ---VGLTS 778 (985)
Q Consensus 703 ~vv~v~~d~-~g~iD~e~L~~~i~~~~~~t~~Vvv~~pn~~G~i~~di~eI~~la~~~galliVD~a~~~~~---~~l~~ 778 (985)
++..+++|+ ++.+|.|++++.+.+++|+ +|++...++.=.+ |+++++++|++.|+++++|.+|..++ +.+.+
T Consensus 150 ~~~~Y~~d~~~~~IDyd~~~~~a~~~kPk--lIi~G~S~y~r~~--d~~~~reIad~vga~l~~D~aH~aGLIA~g~~~s 225 (463)
T d2a7va1 150 ESMPYKLNPKTGLIDYNQLALTARLFRPR--LIIAGTSAYARLI--DYARMREVCDEVKAHLLADMAHISGLVAAKVIPS 225 (463)
T ss_dssp ----CCBCTTTCSBCHHHHHHHHHHHCCS--EEEECCSSCCSCC--CHHHHHHHHHHTTCEEEEECGGGHHHHHTTSSCC
T ss_pred eeeeeeccCCCCcCcHHHHHHHHhhcCCc--eEEeccccccccc--CHHHHHHHhhcccceEEechhhhhHHhhhhhhcC
Confidence 555566664 5899999999999875554 5666554443344 79999999999999999999996544 33456
Q ss_pred CCccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHH
Q 001989 779 PGYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYT 858 (985)
Q Consensus 779 pg~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a 858 (985)
|-.. +|++++++||+| .||..|+|.++++.....|..--....+..+.-....++.+.+++.-. ..++.|.+
T Consensus 226 P~~~-aDvvt~tTHKTl------rGPrgGiIl~~~~~~~~~~~~~~~~~~~~~~~i~~avFPg~qggph~h-~iAa~Ava 297 (463)
T d2a7va1 226 PFKH-ADIVTTTTHKTL------RGARSGLIFYRKGVKAVDPKTGREIPYTFEDRINFAVFPSLQGGPHNH-AIAAVAVA 297 (463)
T ss_dssp GGGT-CSEEEEESSGGG------CSCSCEEEEEECSEEEEETTTEEEEECCCHHHHHHHHTTTTCCSCCHH-HHHHHHHH
T ss_pred hhhh-hhhhhchhhhhh------cCCCceEEEEcccccccccccCccchhHHHHHhhhhcCcccchhhhhh-hHHHHHHH
Confidence 7654 799999999999 689999999987432111100000000000000000011111111111 22333444
Q ss_pred HHHHhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCC
Q 001989 859 YIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTM 937 (985)
Q Consensus 859 ~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~ 937 (985)
+...+.+ .++++++++.+|++.|++.|.+ |+.++..+ ...|.+++++++ .+.+...+.+.|.+.||.++..
T Consensus 298 ~~ea~~~-~fk~Ya~qVv~NAk~La~~L~~~G~~vv~gg---TdnHlvlvdl~~----~~~~G~~ae~~Le~~gI~~Nkn 369 (463)
T d2a7va1 298 LKQACTP-MFREYSLQVLKNARAMADALLERGYSLVSGG---TDNHLVLVDLRP----KGLDGARAERVLELVSITANKN 369 (463)
T ss_dssp HHHHHSH-HHHHHHHHHHHHHHHHHHHHHHTTCEEGGGS---CSSSEEEEECTT----TTCCHHHHHHHHHHTTEECEEE
T ss_pred HHHhcCc-hHHHHHHHHHHHHHHHHHHHHhCCCeeecCC---CCCceeeeeccc----cCCCHHHHHHHHHhccCccCCc
Confidence 4444444 4788999999999999999987 88886543 456778899863 3678999999999999987632
Q ss_pred CC-----C-CCCEEEEeccC----CCCHHHHHHHHccCChhHHH
Q 001989 938 SW-----P-VPGTLMIEPTE----SESKSWTGIVMLSSPSEKKL 971 (985)
Q Consensus 938 ~~-----p-~~~~lris~t~----~~t~eeId~~~~~~~l~~~~ 971 (985)
.- | .++.|||...+ ...++|+.+ ..+.+.+++
T Consensus 370 ~iP~D~~~~~~sGiRiGT~a~TtrG~~e~dm~~--iA~~I~~~l 411 (463)
T d2a7va1 370 TCPGDRSAITPGGLRLGAPALTSRQFREDDFRR--VVDFIDEGV 411 (463)
T ss_dssp CCTTCCCSSSCSEEEEESHHHHHTTCCHHHHHH--HHHHHHHHH
T ss_pred cCCCCCCCCCCCceEeCCHHHHhCCCCHHHHHH--HHHHHHHHH
Confidence 21 2 45789998764 356788887 555555544
|
| >d2e7ja1 c.67.1.9 (A:8-371) Selenocysteinyl-tRNA synthase (SepSecS) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.78 E-value=1.1e-17 Score=186.77 Aligned_cols=278 Identities=17% Similarity=0.196 Sum_probs=180.0
Q ss_pred HHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc---
Q 001989 212 SLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL--- 288 (985)
Q Consensus 212 ~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~--- 288 (985)
.+..+++.+|+++|+|. +.+++|+|.+..+++.++. ++||+||+++.+|+++...++. .|.+++.+|.
T Consensus 48 l~~~~~~~~A~~~g~e~--~~~t~g~t~a~~~~~~al~---~~gd~Vi~~~~~h~s~~~~~~~----~g~~v~~v~~~~~ 118 (364)
T d2e7ja1 48 IHDFIHNQLPKFLGCDV--ARVTNGAREAKFAVMHSLA---KKDAWVVMDENCHYSSYVAAER----AGLNIALVPKTDY 118 (364)
T ss_dssp HHHHHHTHHHHHTTSSE--EEEESSHHHHHHHHHHHHC---CTTCEEEEETTCCHHHHHHHHH----TTCEEEEECCCCT
T ss_pred HHHHHHHHHHHHhCcCE--EEEECcHHHHHHHHHHHHh---CCCcEEEeecccccccchHHHh----ccceEEEeeeccc
Confidence 45668899999999876 7789999988888777762 3899999999999999988753 5888888754
Q ss_pred -------hhhhc-c-----CCCEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCC-CCCcccceEEE
Q 001989 289 -------KDIDY-K-----SGDVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILK-PPGELGADIVV 353 (985)
Q Consensus 289 -------~~l~~-l-----~~~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~-~~~~~GaDi~v 353 (985)
+++++ + ..++++|++++| |++|.+.|+++|+++||++|++++||. .++.|.+. +..++|+|+++
T Consensus 119 ~~~~i~~~~l~~~i~~~~k~~~~~lv~i~~~~n~tG~~~~l~~I~~ia~~~~i~livD~-a~~~g~~~~~~~~~g~D~~~ 197 (364)
T d2e7ja1 119 PDYAITPENFAQTIEETKKRGEVVLALITYPDGNYGNLPDVKKIAKVCSEYDVPLLVNG-AYAIGRMPVSLKEIGADFIV 197 (364)
T ss_dssp TTCCCCHHHHHHHHHHHTTTSCEEEEEEESSCTTTCCCCCHHHHHHHHHTTTCCEEEEC-TTTBTTBCCCHHHHTCSEEE
T ss_pred cccccCHHHHHhhhhhhcccCCceEEEeecCCCCCceeecchhheeccccccchhhccc-cchhhhhhhcccccccceee
Confidence 33444 3 245678888988 789999999999999999999999953 55666543 34678999999
Q ss_pred ecC-ccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHH
Q 001989 354 GSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAA 432 (985)
Q Consensus 354 ~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa 432 (985)
+|+ |+|+.| +++|++++++++.+.+-... .. |. ..... ...++.+. .+..+++++
T Consensus 198 ~S~~K~~~~~-----g~~g~l~~~~~~~~~~~~~~---------~~-~~----~~~~~--~~~~~~~~---~~~~~~~~~ 253 (364)
T d2e7ja1 198 GSGHKSMAAS-----GPIGVMGMKEEWAEIVLRRS---------EK-YK----NKEVE--LLGCTARG---ATIITLMAS 253 (364)
T ss_dssp EEHHHHSSCC-----SSCEEEEECTTTTTTTTCBC---------SS-CT----TSBGG--GTTCCCCS---HHHHHHHHH
T ss_pred eccccccCCC-----CCEEEEEECHHHHHHHHhhc---------cc-cC----ccccc--ccccccch---hHHHHHHHH
Confidence 998 767543 14689999988776542110 00 00 00000 01122322 334455555
Q ss_pred HHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCC-CCcceEE-EecCCHH-----------HHHHHHHHcCcee
Q 001989 433 MYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGL-PFFDTVK-VKCADAH-----------AIASAAYKIEMNL 499 (985)
Q Consensus 433 ~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~-~~~~~~~-~~~~~~~-----------~v~~~L~~~GI~~ 499 (985)
+- .. .+.++.. .+..++++++.++|+++| +.++.. +....++ +..+... .+...|..+|+..
T Consensus 254 l~--~~-~~~~~~~-~~~~~~~~~~~~~l~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 328 (364)
T d2e7ja1 254 FP--HV-RERIKRW-DEEVEKARRFAAEMEKLG-IKQLGDNPHNHDLMFFHAEVLYEISKKAKGGRFFLYRELKSRKIHG 328 (364)
T ss_dssp HH--HH-HHHGGGH-HHHHHHHHHHHHHHHHTT-CEEESSSSCCSSEEEEECHHHHHHHHHSSSGGGHHHHHHHHTTEEC
T ss_pred HH--HH-HHHHHHH-HHHHHHHHHHHHHHHHcC-CeecCCCCCCcceEEEeccchHHHHHHhhccchHHHHHHHhcCCce
Confidence 41 11 1112222 233567889999999998 777643 3222232 2222122 2334455555543
Q ss_pred eee-cCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 500 RVV-DSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 500 ~~~-~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
... ....++++ +..+|+||||+++++|++
T Consensus 329 ~~~g~~~~~~~~-~~~~t~edid~~~~~l~e 358 (364)
T d2e7ja1 329 IKPGLTRYFKLS-TYGLSDEEVDYVLNAFKE 358 (364)
T ss_dssp SCTTCCSEEEEE-CTTCCHHHHHHHHHHHHH
T ss_pred ecCCCcceEEEe-ccCCCHHHHHHHHHHHHH
Confidence 211 12345554 566899999999999974
|
| >d1c4ka2 c.67.1.5 (A:108-569) Ornithine decarboxylase major domain {Lactobacillus sp., strain 30a [TaxId: 1591]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Ornithine decarboxylase major domain domain: Ornithine decarboxylase major domain species: Lactobacillus sp., strain 30a [TaxId: 1591]
Probab=99.78 E-value=3e-18 Score=198.47 Aligned_cols=288 Identities=10% Similarity=-0.019 Sum_probs=182.8
Q ss_pred HHHHHHHHHHHHhcCCCCcceeec-cchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCch
Q 001989 211 ESLLNFQTMIADLTGLPMSNASLL-DEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDLK 289 (985)
Q Consensus 211 ~~i~e~q~~ia~L~g~~~~~~sl~-~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~~ 289 (985)
..|.|+|+.+|+++|++. +.++ +|+|++..|++++.. ++||+||+++.+|.|+..++..++ ..+..+..++.+
T Consensus 66 ~~i~eae~~~A~~~ga~~--a~f~~~Gtt~~n~a~i~a~~---~~gd~Vi~~~~~H~Sv~~~~~~l~-~~~~~~~~~~~~ 139 (462)
T d1c4ka2 66 GPAVAAEKHAARVYNADK--TYFVLGGSSNANNTVTSALV---SNGDLVLFDRNNHKSVYNSALAMA-GGRPVYLQTNRN 139 (462)
T ss_dssp THHHHHHHHHHHHTTCSE--EEEESSHHHHHHHHHHHHHC---CTTCEEEEETTCCHHHHHHHTTTT-CCEEEEECEEEC
T ss_pred HHHHHHHHHHHHHhCCCe--EEEECCchHHHHHHHHHHhc---CCCCeEEecccchHHHHHHHHHHh-cCCceeeecccc
Confidence 468899999999999986 4444 444666667666542 489999999999999998875432 334444433211
Q ss_pred -----------h--------------hhc-cCCCEe-EEEEEcCCCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCC
Q 001989 290 -----------D--------------IDY-KSGDVC-GVLVQYPGTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILK 342 (985)
Q Consensus 290 -----------~--------------l~~-l~~~t~-~V~v~~pn~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~ 342 (985)
+ +++ +.+++. +++++.||++|.+.|+++|+++||++|++++|+. .++.+...
T Consensus 140 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~G~~~dl~~I~~ia~~~g~~l~vD~-A~~~~~~~ 218 (462)
T d1c4ka2 140 PYGFIGGIYDSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQLGTYDGTIYNAHEVVKRIGHLCDYIEFDS-AWVGYEQF 218 (462)
T ss_dssp TTCCEEEECGGGSCHHHHHHHTTTSSHHHHTCSCCBSEEEEESBCTTSEEECHHHHHHHHGGGBSEEEEEC-TTCCGGGS
T ss_pred cccccCCCChHHhhHHHHHhhhhhhcHHhhhccCCceeEEEEeeeeccchhhHHHHHHHHHHcCCEEEEec-hhhccccc
Confidence 1 112 234454 4456778999999999999999999999999942 33322111
Q ss_pred C--------------CCcccceEEEecC-ccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccc
Q 001989 343 P--------------PGELGADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTR 407 (985)
Q Consensus 343 ~--------------~~~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tr 407 (985)
. ..+.|+|++++|+ |.++.+ + +++++.+++..+..... .. .+.. -+
T Consensus 219 ~~~~~~~~~~~g~~~~~~~~~D~~~~S~HK~lg~~-~----~g~ll~~~~~~~~~~~~-~~--------~~~~-----~~ 279 (462)
T d1c4ka2 219 IPMMRNSSPLLIDDLGPEDPGIIVVQSVHKQQAGF-S----QTSQIHKKDSHIKGQLR-YC--------DHKH-----FN 279 (462)
T ss_dssp SGGGGGGCTTSCCCCCTTSCEEEEEECHHHHSSCC-T----TCEEEEEECGGGTTSTT-CC--------CHHH-----HH
T ss_pred cCcCCcchhhccccccccCCccEEEEecCcccccc-c----ceEEEEeccccccccch-hh--------hHHH-----HH
Confidence 0 0135679999999 666543 2 23677777765543211 00 0000 00
Q ss_pred cccccccccCCCccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCe-EEcCCC-------------
Q 001989 408 EQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTV-EVQGLP------------- 473 (985)
Q Consensus 408 e~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~-~~~~~~------------- 473 (985)
.....++.++++. ..+.++.++. .++..++.+++.++..+++.++++++.+++++ ......
T Consensus 280 ~~~~~~~t~sp~~---~~~asl~~a~--~~~~~~~g~~l~~~~~~~a~~~r~~l~~~~~~~~~~~~~~v~~~~~~~~~~~ 354 (462)
T d1c4ka2 280 NSFNLFMSTSPFY---PMYAALDVNA--AMQEGEAGRKLWHDLLITTIEARKKLIKAGSMFRPFVPPVVNGKKWEDGDTE 354 (462)
T ss_dssp HHHHHHSCSSCCH---HHHHHHHHHH--HHHSHHHHHHHHHHHHHHHHHHHHHHHHTTCSSEESSCSEETTEEGGGSCHH
T ss_pred HhhhhcccCCchH---HHHHHHHHHH--HHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccccccccccchH
Confidence 0001112222222 2222222222 45556667888899999999999999887422 111000
Q ss_pred --------------------------C--cc--eEEEecC------------C--HHHHHHHHHHcCceeeeecCCeEEE
Q 001989 474 --------------------------F--FD--TVKVKCA------------D--AHAIASAAYKIEMNLRVVDSNTVTA 509 (985)
Q Consensus 474 --------------------------~--~~--~~~~~~~------------~--~~~v~~~L~~~GI~~~~~~~~~lri 509 (985)
. .+ .+.+..+ + +.++.+.|+++||.++....+.+|+
T Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dp~k~~l~~~gi~~~~g~~~~~G~~~~~~~~~L~~~gI~~e~~~~~~i~~ 434 (462)
T d1c4ka2 355 DMANNIDYWRFEKGAKWHAYEGYGDNQYYVDPNKFMLTTPGINPETGDYEDFGVPATIVANYLRDHGIIPEKSDLNSILF 434 (462)
T ss_dssp HHTTCGGGGBCCTTCTTTCCTTCCTTCEEECTTEEEEECSSEETTTTEECSSCCCHHHHHHHHHHTTCCCSEECSSEEEE
T ss_pred hhhcccchhccCCcchhccccccCccceecccceeEEecCCccccccchhhcCCcHHHHHHHHHHcCCeeeccCCCeEEE
Confidence 0 01 1334322 1 6789999999999988777789999
Q ss_pred EeccCCCHHHHHHHHHHHhC
Q 001989 510 SFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 510 s~t~~~t~edId~li~aL~~ 529 (985)
+++..+|++|||+++++|.+
T Consensus 435 ~~s~~~T~edid~li~aL~e 454 (462)
T d1c4ka2 435 LMTPAETPAKMNNLITQLLQ 454 (462)
T ss_dssp ECCTTCCHHHHHHHHHHHHH
T ss_pred EecCCCCHHHHHHHHHHHHH
Confidence 99999999999999999984
|
| >d2ch1a1 c.67.1.3 (A:2-389) 3-hydroxykynurenine transaminase {Malaria mosquito (Anopheles gambiae) [TaxId: 7165]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: 3-hydroxykynurenine transaminase species: Malaria mosquito (Anopheles gambiae) [TaxId: 7165]
Probab=99.78 E-value=1e-17 Score=189.07 Aligned_cols=327 Identities=13% Similarity=0.120 Sum_probs=218.1
Q ss_pred cCCCCCCCCCcHHHHHHHHhCCccccccCCChhhHhhhHHHHHHHHHHHHHHhcCCCCcc-eeeccchHHHHHHHHHHhh
Q 001989 171 IGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMSN-ASLLDEGTAAAEAMAMCNN 249 (985)
Q Consensus 171 lG~g~y~~~~p~~v~~~i~~~~~~~t~~~pyq~e~sqg~l~~i~e~q~~ia~L~g~~~~~-~sl~~~~ta~~ea~~~a~~ 249 (985)
++.| |..+|+.|.++ .+++.. +-+ ++...+.+.+++..+++|+|.+... +.+..|||.+++++...+.
T Consensus 21 ~~PG--P~~~~~~V~~A-m~~~~~----~hr----~~ef~~i~~~~r~~L~~ll~~~~~~~i~~~gsgT~a~ea~~~~l~ 89 (388)
T d2ch1a1 21 MGPG--PSNCSKRVLTA-MTNTVL----SNF----HAELFRTMDEVKDGLRYIFQTENRATMCVSGSAHAGMEAMLSNLL 89 (388)
T ss_dssp CSSS--SCCCCHHHHHH-TTSCCC----CTT----CHHHHHHHHHHHHHHHHHHTCCCSCEEEESSCHHHHHHHHHHHHC
T ss_pred eeCC--CCCCCHHHHHH-hCcCCC----CCC----CHHHHHHHHHHHHHHHHHhCCCCCeEEEEcCcHHHHHHHHHHHhc
Confidence 3566 55678887644 444432 223 3445688999999999999997554 4455678999998887652
Q ss_pred hhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc--------hhhhc--cCCCEeEEEEEc-CCCCeeeccHHHH
Q 001989 250 IQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL--------KDIDY--KSGDVCGVLVQY-PGTEGEVLDYGDF 318 (985)
Q Consensus 250 ~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~--------~~l~~--l~~~t~~V~v~~-pn~~G~v~di~~I 318 (985)
.++++|++....|.+....... +..+...+.+.. ++++. .+.+++.|++++ .|.+|.+.|+++|
T Consensus 90 ---~~~~~vl~~~~g~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~t~tG~~~~~~~i 164 (388)
T d2ch1a1 90 ---EEGDRVLIAVNGIWAERAVEMS--ERYGADVRTIEGPPDRPFSLETLARAIELHQPKCLFLTHGDSSSGLLQPLEGV 164 (388)
T ss_dssp ---CTTCEEEEEESSHHHHHHHHHH--HHTTCEEEEEECCTTSCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCTTH
T ss_pred ---cccccccccccccccccchhhh--hhhcccccccccccccccchhhhhhhhccCCcceeeeeecccccccccchhhh
Confidence 2788999888888776655432 234545444422 12222 345678888876 5889999999999
Q ss_pred HHHHHhCCcEEEEEecCccccCC-CCCCcccceEEEecC-ccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCC
Q 001989 319 IKNAHANGVKVVMATDLLALTIL-KPPGELGADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSG 396 (985)
Q Consensus 319 ~~~a~~~galliV~a~~~~lg~l-~~~~~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g 396 (985)
+++||++|++++||+ ..++|.. .+..+||+|++++++ |++++| ||+|+++++++.+..+...-.|.
T Consensus 165 ~~~~~~~~~~~~vD~-~ss~g~~pid~~~~~~d~~~~s~~K~~~gp-----~G~g~~~~~~~~~~~~~~~~~~~------ 232 (388)
T d2ch1a1 165 GQICHQHDCLLIVDA-VASLCGVPFYMDKWEIDAVYTGAQKVLGAP-----PGITPISISPKALDVIRNRRTKS------ 232 (388)
T ss_dssp HHHHHHTTCEEEEEC-TTTBTTBCCCTTTTTCCEEECCCC-CCCCC-----SSCEEEEECHHHHHHHHTCSSCC------
T ss_pred cchhccccceeeeee-eecccccccchhccCceEEEEccccccCCC-----CeEEEEeccHHHHHhhhcccCcc------
Confidence 999999999999964 3455543 456899999999999 656543 57899999998776654332221
Q ss_pred Ccceeeec--ccccccccc-cccCCCccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEc-CC
Q 001989 397 KPALRVAM--QTREQHIRR-DKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQ-GL 472 (985)
Q Consensus 397 ~~~~~l~l--~tre~~irr-e~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~-~~ 472 (985)
..+.+.. +........ ...|.+......+.++..++ .++..+|..+...+...+..+++..+...+ +.+. .+
T Consensus 233 -~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~i~~~~~~l--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 308 (388)
T d2ch1a1 233 -KVFYWDLLLLGNYWGCYDEPKRYHHTVASNLIFALREAL--AQIAEEGLENQIKRRIECAQILYEGLGKMG-LDIFVKD 308 (388)
T ss_dssp -SCGGGCHHHHHHHTTCSSSCCCCCCCCCHHHHHHHHHHH--HHHHHHCHHHHHHHHHHHHHHHHHHHHHHT-CCBSSCS
T ss_pred -ccccccchhhhhhhcccccccccCccchHHHHHHHHHHH--HHHHHhhhHHHHHHHHHHHHHHHhhhhhcc-cccccCC
Confidence 1111110 001111112 23345554445565555544 566667888888888888888888887765 4443 22
Q ss_pred C--Ccc-eEEEecCC---HHHHHHHHHH-cCceeee----ecCCeEEEE-eccCCCHHHHHHHHHHHhC
Q 001989 473 P--FFD-TVKVKCAD---AHAIASAAYK-IEMNLRV----VDSNTVTAS-FDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 473 ~--~~~-~~~~~~~~---~~~v~~~L~~-~GI~~~~----~~~~~lris-~t~~~t~edId~li~aL~~ 529 (985)
+ ..+ .++|.+++ +.++.+.|.+ +||.++. ..++.+||| +++++|+||||+|+++|++
T Consensus 309 ~~~rs~~v~~~~~p~g~~~~~l~~~l~~~~gI~v~~G~~~~~~~~~RIs~~g~~~t~edI~~ll~alke 377 (388)
T d2ch1a1 309 PRHRLPTVTGIMIPKGVDWWKVSQYAMNNFSLEVQGGLGPTFGKAWRVGIMGECSTVQKIQFYLYGFKE 377 (388)
T ss_dssp GGGBCTTEEEEECCTTCCHHHHHHHHHHHHCBCCBCCCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHH
T ss_pred HHHhCCeEEEEECCCCCCHHHHHHHHhhcCCEEEeCCCccccCCEEEEcCCcCCCCHHHHHHHHHHHHH
Confidence 2 222 45677753 7899999866 4998753 235689999 6889999999999999985
|
| >d1j32a_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Phormidium lapideum [TaxId: 32060]
Probab=99.78 E-value=5.4e-18 Score=191.88 Aligned_cols=337 Identities=13% Similarity=0.126 Sum_probs=212.7
Q ss_pred cccccccccCCCcccccccccccccc-ccCCCCchhhhhhHHHHHHHHHHHHHHHhCCCc--cceecCcHH-HHHHHHHH
Q 001989 591 MIPLGSCTMKLNATTEMMPVTWPSFA-NIHPFAPADQAQGYQEMFNNLGEWLCTITGFDS--FSLQPNAGA-AGEYAGLM 666 (985)
Q Consensus 591 ~~~lG~~t~~~~~~~~~~~~~~~~f~-~~~p~~p~e~~~G~~~~~~e~~~~la~l~G~~~--~~~~~~sGa-~a~~a~l~ 666 (985)
++.|+.+.+.+++......+...... ..+.|.+ .+|..++.+.+.+++.+..|.+. ..+..++|+ ++...
T Consensus 32 vi~l~~G~p~~~~p~~v~~a~~~~~~~~~~~Y~~---~~G~~~lR~aia~~~~~~~g~~~~~~~i~it~G~~~al~~--- 105 (388)
T d1j32a_ 32 VCSFSAGEPDFNTPKHIVEAAKAALEQGKTRYGP---AAGEPRLREAIAQKLQRDNGLCYGADNILVTNGGKQSIFN--- 105 (388)
T ss_dssp CEECCCSSCSSCCCHHHHHHHHHHHHTTCCSCCC---TTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHH---
T ss_pred eEECCCCCCCCCCCHHHHHHHHHHHhcCCCCCCC---CCCCHHHHHHHHHHHHHhcccCCCCceEEEcCCHHHHHHH---
Confidence 67788777776654322221110000 1223433 46777777777778887777653 455555555 44433
Q ss_pred HHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcCCC--CCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCcc
Q 001989 667 VIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDA--KGNINIEELRKAAEANRDNLSTLMVTYP-STHG 743 (985)
Q Consensus 667 air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~d~--~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G 743 (985)
+++.+ .+++|+|+++++.+..+...++..|.+++.++.+. ++.+|+++|+++++ ++++++++++| |++|
T Consensus 106 ~~~~~-----~~~gd~Vlv~~P~y~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~~l~~~~~---~~~~~~~~~~P~NPTG 177 (388)
T d1j32a_ 106 LMLAM-----IEPGDEVIIPAPFWVSYPEMVKLAEGTPVILPTTVETQFKVSPEQIRQAIT---PKTKLLVFNTPSNPTG 177 (388)
T ss_dssp HHHHH-----CCTTCEEEEESSCCTHHHHHHHHTTCEEEEECCCGGGTTCCCHHHHHHHCC---TTEEEEEEESSCTTTC
T ss_pred HHHHH-----hCCCCEEEEcCCCcHHHHHHHHHhcCeEEEEecccccccCCCHHHHHHhCC---CCCeEEEECCCCCCCC
Confidence 33333 14789999999888888888888999999998754 35799999999987 89999999999 5799
Q ss_pred ccc--cCHHHHHHHHHHcCCEEEEEccccccc-cCCCCC--Cc-----cCCcEEEeCCcccccccCCCCCCceEEEEEcc
Q 001989 744 VYE--EGIDEICKIIHDNGGQVYMDGANMNAQ-VGLTSP--GY-----IGADVCHLNLHKTFCIPHGGGGPGMGPIGVKK 813 (985)
Q Consensus 744 ~i~--~di~eI~~la~~~galliVD~a~~~~~-~~l~~p--g~-----~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~ 813 (985)
.+. ..+++|.++|+++|+++++|.++..-. ..-..+ .. ..-.+++.|++|+|+.| |.++|++++++
T Consensus 178 ~~~~~~~~~~l~~~~~~~~~~iI~De~Y~~~~~~~~~~~s~~~~~~~~~~~~i~~~S~SK~~~~~----GlRvG~~~~~~ 253 (388)
T d1j32a_ 178 MVYTPDEVRAIAQVAVEAGLWVLSDEIYEKILYDDAQHLSIGAASPEAYERSVVCSGFAKTYAMT----GWRVGFLAGPV 253 (388)
T ss_dssp CCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCHHHHHTEEEEEESTTTTTCT----TTCCEEEECCH
T ss_pred cccchhhhhhhhcccccCCeEEEchhhhhcccccCCCCCCHHHhCcccccceeEecCChhhhhcc----hhHeEEEEECH
Confidence 875 358889999999999999999873111 110000 01 11357788889998654 67899999887
Q ss_pred cccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhccCCee
Q 001989 814 HLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPIL 893 (985)
Q Consensus 814 ~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~g~~l~ 893 (985)
++.+.+.... .......+ ..++. +.......+.+.+++..+...++.+++.+.|++...+.
T Consensus 254 ~~~~~~~~~~------------~~~~~~~~--~~~q~-----a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~ 314 (388)
T d1j32a_ 254 PLVKAATKIQ------------GHSTSNVC--TFAQY-----GAIAAYENSQDCVQEMLAAFAERRRYMLDALNAMPGLE 314 (388)
T ss_dssp HHHHHHHHHH------------HTTTCSCC--HHHHH-----HHHHHHHSCSHHHHHHHHHHHHHHHHHHHHHHTCTTCB
T ss_pred HHHHHHHHhh------------hhcccccc--HHHHH-----HHhhcccchHHHHHHHHHHHHHHHHHHHHHHHhCCCCE
Confidence 7654321100 00011111 11111 11122223445566666667788888999998632332
Q ss_pred ecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHH-CCCccCC-CCCCCCCEEEEeccCCCCHHHHHHHHccCChhHHH
Q 001989 894 FRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMD-YGFHGPT-MSWPVPGTLMIEPTESESKSWTGIVMLSSPSEKKL 971 (985)
Q Consensus 894 ~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~-~Gi~~~~-~~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~~ 971 (985)
+..+.+.++ +.++++. .+.+..+++++|.+ +||.+.+ ..|..++++|+++. .+.|+|++ .++.|++++
T Consensus 315 ~~~p~gg~~--l~~~l~~----~~~~~~~~~~~ll~~~gV~v~pG~~F~~~~~~Rls~~--~~~e~l~~--al~rl~~~l 384 (388)
T d1j32a_ 315 CPKPDGAFY--MFPSIAK----TGRSSLDFCSELLDQHQVATVPGAAFGADDCIRLSYA--TDLDTIKR--GMERLEKFL 384 (388)
T ss_dssp CCCCCBTTE--ECCBCGG----GTCCHHHHHHHHHHHHCEECEEGGGGTCTTBEEEECC--SCHHHHHH--HHHHHHHHH
T ss_pred ecCCCceEE--EEEECCC----CCCCHHHHHHHHHHhCCEEEEeccccCCCCeEEEEEe--CCHHHHHH--HHHHHHHHH
Confidence 223333333 2345431 24567888888764 5988643 34555689999986 57889988 778888888
Q ss_pred Hhh
Q 001989 972 HRL 974 (985)
Q Consensus 972 ~~~ 974 (985)
+.+
T Consensus 385 ~~l 387 (388)
T d1j32a_ 385 HGI 387 (388)
T ss_dssp HHH
T ss_pred HHh
Confidence 764
|
| >d2bkwa1 c.67.1.3 (A:3-384) Alanine-glyoxylate aminotransferase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.77 E-value=1.7e-17 Score=187.04 Aligned_cols=319 Identities=10% Similarity=0.040 Sum_probs=201.2
Q ss_pred hHHHHHHHHHHHHHHHhCC----Ccc-ceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCccc--HHHHHHCC
Q 001989 629 GYQEMFNNLGEWLCTITGF----DSF-SLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTN--PATAAMCG 701 (985)
Q Consensus 629 G~~~~~~e~~~~la~l~G~----~~~-~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~--~~~a~~~G 701 (985)
.+.+...++++.+.++++. +.. .++.++|++++++++..+ .. ...++++|++....|..+ ...++..|
T Consensus 33 ~f~~~~~~~~~~~r~~~~~~~~~~~~~i~~t~sgT~a~~~~~~~l---~~--~~~~gd~vlv~~~~~~~~~~~~~~~~~~ 107 (382)
T d2bkwa1 33 EFVSIFQRVLKNTRAVFKSAAASKSQPFVLAGSGTLGWDIFASNF---IL--SKAPNKNVLVVSTGTFSDRFADCLRSYG 107 (382)
T ss_dssp HHHHHHHHHHHHHHHHTTCCGGGTCEEEEEESCTTHHHHHHHHHH---SC--TTCSCCEEEEECSSHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHhhhcCCCCeEEEEeCcHHHHHHHHHHHH---HH--hcCCCCceEEEEechhhhhhhhhccccc
Confidence 3455667788888888875 222 355677777776554433 11 124678999876544332 22356778
Q ss_pred cEEEEEcCC-CCCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccCHHHHHHHHHHc--CCEEEEEccccccccCCC
Q 001989 702 MKIVSVGTD-AKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDN--GGQVYMDGANMNAQVGLT 777 (985)
Q Consensus 702 ~~vv~v~~d-~~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~--galliVD~a~~~~~~~l~ 777 (985)
..++.+... ++...+.+.+++++.. ++++++++++. +.+|+.. |+++++++|+++ +++++||++|+.+...+
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~tg~~~-~~~~~~~~~~~~~~~~~~~vDa~qs~g~~pi- 183 (382)
T d2bkwa1 108 AQVDVVRPLKIGESVPLELITEKLSQ--NSYGAVTVTHVDTSTAVLS-DLKAISQAIKQTSPETFFVVDAVCSIGCEEF- 183 (382)
T ss_dssp CEEEEECCSSTTSCCCHHHHHHHHHH--SCCSEEEEESEETTTTEEC-CHHHHHHHHHHHCTTSEEEEECTTTTTTSCC-
T ss_pred cccccccccCCCCccchhHHHHHhhh--ccchheeeeeccccccccc-cchhhhhhccccccceeeeeecccccccccc-
Confidence 888777653 4456889999888864 45667777765 5689988 899999988876 59999999997655443
Q ss_pred CCCccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCcccc-----CCCC-------CC-CCCCCCCCCCCC
Q 001989 778 SPGYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVS-----TGGI-------PA-PEKSQPLGTIAA 844 (985)
Q Consensus 778 ~pg~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~-----~~~~-------~~-~~~~~~~~~i~s 844 (985)
+..++|+|++++++||+|+ |.||+|++++++++...+.....++ ..+. .. ......+.+++.
T Consensus 184 d~~~~giD~~~~s~~K~l~-----gP~G~g~l~vs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Tp~ 258 (382)
T d2bkwa1 184 EFDEWGVDFALTASQKAIG-----APAGLSISLCSSRFMDYALNDSKNGHVHGYFSSLRRWTPIMENYEAGKGAYFATPP 258 (382)
T ss_dssp CTTTTTCSEEEEESSSTTC-----CCSCEEEEEECHHHHHHHTCHHHHCCCSCSTTCHHHHHHHHHHHHTTCCCCSSCCC
T ss_pred cccccCeeEEeecccccCc-----CCCchhhhhccHHHHhhhhhcccCCCcccchhhhhhhhhhhhcccccccccccCCc
Confidence 5678999999999999994 4469999999987654332111110 0000 00 000011112211
Q ss_pred cchhhhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhccCCeeecC--CCCceee-EEEEEecCccccCCCCHH
Q 001989 845 APWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRG--VNGTVAH-EFIVDLRGLKNTAGIEPE 921 (985)
Q Consensus 845 ~~~g~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~g~~l~~~~--~~~~~~~-~~iv~~~~~~~~~g~~~~ 921 (985)
...+.+...+|+.+..+|+.++.++..++++++++++.+..++.... +.....+ .+.+.. .++.
T Consensus 259 -----~~~i~al~~aL~~~~~~g~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~s~~v~~~~~--------~~~~ 325 (382)
T d2bkwa1 259 -----VQLINSLDVALKEILEEGLHKRWDLHREMSDWFKDSLVNGLQLTSVSRYPSNMSAHGLTAVYV--------ADPP 325 (382)
T ss_dssp -----HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTTTCCEESSCSSSTTBCSSCEEEEC--------SCHH
T ss_pred -----HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhcccccccccCchhccCCcEEEEcC--------CCHH
Confidence 11112223456667777888888888888999999987643322111 1111111 123333 3678
Q ss_pred HHHHHHHHCCCccCC-CCCCC-CCEEEEe-ccCCCCHHHHHHHHccCChhHHHHhhcc
Q 001989 922 DVAKRLMDYGFHGPT-MSWPV-PGTLMIE-PTESESKSWTGIVMLSSPSEKKLHRLKM 976 (985)
Q Consensus 922 ~v~~~L~~~Gi~~~~-~~~p~-~~~lris-~t~~~t~eeId~~~~~~~l~~~~~~~~~ 976 (985)
++.+.|.++||.+.. ..... .+.+||+ +....+.||||+ +.+.|+.+.+.||.
T Consensus 326 ~~~~~L~~~gi~i~~G~~~~~~~~~~Ri~~~G~~~~~e~i~~--l~~~l~~i~~~L~~ 381 (382)
T d2bkwa1 326 DVIAFLKSHGVVIAGGIHKDIGPKYIRIGHMGVTACNKNLPY--MKNCFDLIKLALQR 381 (382)
T ss_dssp HHHHHHHHTTEECBCCCCTTTGGGEEEECCCGGGTSSTTCTH--HHHHHHHHHHHTTC
T ss_pred HHHHHHHHCCeEEECCCChhhcCCEEEEeCCcCCCCHHHHHH--HHHHHHHHHHHHCc
Confidence 999999999998753 22112 3689999 667778889998 66777766666653
|
| >d2byla1 c.67.1.4 (A:36-439) Ornithine aminotransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Ornithine aminotransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.76 E-value=4.7e-17 Score=184.55 Aligned_cols=288 Identities=14% Similarity=0.148 Sum_probs=195.6
Q ss_pred HHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcC--CCCCCEEEE-cCCCCcccHHHHH-------HCC---
Q 001989 635 NNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARG--DHHRNVCII-PVSAHGTNPATAA-------MCG--- 701 (985)
Q Consensus 635 ~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g--~~~~~~IIv-~~~~Hg~~~~~a~-------~~G--- 701 (985)
.++.+.++++.+.+.+ ++.+||++|++++++++|.+....+ ...+.+|+. ...+||....... ..+
T Consensus 86 ~~~~~~~~~~~~~~~v-~~~~sGseA~e~Aik~ar~~~~~~~~~~~~~~~i~~~~~~~hg~t~~~~~~~~~~~~~~~~~p 164 (404)
T d2byla1 86 GEYEEYITKLFNYHKV-LPMNTGVEAGETACKLARKWGYTVKGIQKYKAKIVFAAGNFWGRTLSAISSSTDPTSYDGFGP 164 (404)
T ss_dssp HHHHHHHHHHHTCSEE-EEESSHHHHHHHHHHHHHHHHHHTTCCCTTCCEEEEETTCCCCCSHHHHTTCCCHHHHTTSCS
T ss_pred HHHHHhhhhccccccc-ccccCccccchhHHHHHHHHhhhccccccccccccccCCCccccccceeccCCCcccccCCCC
Confidence 3566788888888654 6678999999999999987753322 123445654 6788887654422 111
Q ss_pred --cEEEEEcCCCCCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCcccccc---CHHHHHHHHHHcCCEEEEEccccccccC
Q 001989 702 --MKIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEE---GIDEICKIIHDNGGQVYMDGANMNAQVG 775 (985)
Q Consensus 702 --~~vv~v~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~---di~eI~~la~~~galliVD~a~~~~~~~ 775 (985)
-.+..+|.+ |++++++++. .+++++|+++-- ...|.+.+ -+++|.++|+++|+++|+|+++ .|
T Consensus 165 ~~~~~~~~p~~-----d~~~l~~~l~--~~~iAaviiEPi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~----tG 233 (404)
T d2byla1 165 FMPGFDIIPYN-----DLPALERALQ--DPNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQ----TG 233 (404)
T ss_dssp CCTTEEEECTT-----CHHHHHHHHT--STTEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTT----TT
T ss_pred CCCCeeEeccc-----CHHHHHHhcC--CCCeEEEEECCccCCCCCccCCHHHHHHHHHHHHhcCeEEEeeccc----cc
Confidence 135556764 8999999996 267888888542 34566641 2899999999999999999886 34
Q ss_pred CCCCCcc------C--CcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcch
Q 001989 776 LTSPGYI------G--ADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPW 847 (985)
Q Consensus 776 l~~pg~~------g--~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~ 847 (985)
+.+.|.+ | +|+++++ |.++ +|+.-+|.+++++++.+.+.+.. ..+|+.
T Consensus 234 fgR~G~~~a~~~~gv~PDi~~~g--K~l~----gG~~p~~av~~~~~i~~~~~~~~------------------~~~T~~ 289 (404)
T d2byla1 234 LARTGRWLAVDYENVRPDIVLLG--KALS----GGLYPVSAVLCDDDIMLTIKPGE------------------HFSTYG 289 (404)
T ss_dssp TTTTSSSSGGGGGTCCCSEEEEC--GGGG----TTSSCCEEEEECHHHHTTSCTTS------------------SCCSST
T ss_pred cccccccchhhhcCCCCCEEEEC--chhh----CCCccceeeeechhhhhccCCCC------------------CCcCCC
Confidence 5455433 2 6999764 7774 44455677778887766553221 123466
Q ss_pred hhhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhccC-Cee--ecCCCCceeeEEEEEecCccccCCCCHHHHH
Q 001989 848 GSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHY-PIL--FRGVNGTVAHEFIVDLRGLKNTAGIEPEDVA 924 (985)
Q Consensus 848 g~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~g~-~l~--~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~ 924 (985)
|+++.++++.+.|..+.++.+.+ +..+...++.++|++.. +.+ +.+. +. + +.+.+. ...+.....+.
T Consensus 290 gnpl~~aaa~a~L~~i~~~~l~~---~~~~~g~~l~~~l~~l~~~~i~~vRg~-Gl-~--~~i~~~---~~~~~~~~~~~ 359 (404)
T d2byla1 290 GNPLGCRVAIAALEVLEEENLAE---NADKLGIILRNELMKLPSDVVTAVRGK-GL-L--NAIVIK---ETKDWDAWKVC 359 (404)
T ss_dssp TCHHHHHHHHHHHHHHHHTTHHH---HHHHHHHHHHHHHHTSCTTTEEEEEEE-TT-E--EEEEEC---CCSSCCHHHHH
T ss_pred cCHHHHHHHHHHHHHHHhcCchh---hhhHhhHHHHHHHHhhccccceeeeec-cc-E--EEEEEe---cCCchhHHHHH
Confidence 78888899999999998776544 55667788888887621 111 1111 11 2 223332 11235677899
Q ss_pred HHHHHCCCccCCCCCCCCCEEEEeccCCCCHHHHHHHHccCChhHHHHh
Q 001989 925 KRLMDYGFHGPTMSWPVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHR 973 (985)
Q Consensus 925 ~~L~~~Gi~~~~~~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~ 973 (985)
++|.++|+++.... .++||++|+...|++|||+ +++++++++..
T Consensus 360 ~~l~~~Gvl~~~~~---~~~i~l~PpL~it~~~id~--~~~~l~~al~~ 403 (404)
T d2byla1 360 LRLRDNGLLAKPTH---GDIIRFAPPLVIKEDELRE--SIEIINKTILS 403 (404)
T ss_dssp HHHHHTTEECEEEE---TTEEEECCCTTCCHHHHHH--HHHHHHHHHHT
T ss_pred HHHHhCCeEEecCC---CCEEEEECCcCCCHHHHHH--HHHHHHHHHHc
Confidence 99999999875432 4799999999999999999 77888888753
|
| >d1b5pa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Thermus thermophilus [TaxId: 274]
Probab=99.75 E-value=2.8e-17 Score=185.40 Aligned_cols=347 Identities=14% Similarity=0.136 Sum_probs=208.6
Q ss_pred HHHHHHHHHhccccCcccccccccccccCCCcccccccccccccc-ccCCCCchhhhhhHHHHHHHHHHHHHHHhCCC--
Q 001989 572 ELLRYIHLLQSKELSLCHSMIPLGSCTMKLNATTEMMPVTWPSFA-NIHPFAPADQAQGYQEMFNNLGEWLCTITGFD-- 648 (985)
Q Consensus 572 e~~~~l~~l~~~~~~~~~~~~~lG~~t~~~~~~~~~~~~~~~~f~-~~~p~~p~e~~~G~~~~~~e~~~~la~l~G~~-- 648 (985)
++....+++..++. .++.|+.+.|.+++..+...+...... ..+.|.+ .+|..++.+.+.+++.+..|.+
T Consensus 18 ~i~~~a~~~~~~G~----~vi~l~~g~p~~~~p~~i~~a~~~~~~~~~~~Y~~---~~G~~~lR~~ia~~~~~~~~~~~~ 90 (382)
T d1b5pa_ 18 AVNAKALELRRQGV----DLVALTAGEPDFDTPEHVKEAARRALAQGKTKYAP---PAGIPELREALAEKFRRENGLSVT 90 (382)
T ss_dssp HHHHHHHHHHHTTC----CCEECCCSSCSSCCCHHHHHHHHHHHHTTCCSCCC---TTCCHHHHHHHHHHHHHTTCCCCC
T ss_pred HHHHHHHHHHhCCC----CeEECCCCCCCCCCCHHHHHHHHHHHhcCCcCCCC---CCCCHHHHHHHHhhhhhhcccccc
Confidence 44444455555543 267888888877654332221100110 1223333 4677777777777777766654
Q ss_pred ccceecCcHH-HHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcCCC--CCCCCHHHHHHHHH
Q 001989 649 SFSLQPNAGA-AGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDA--KGNINIEELRKAAE 725 (985)
Q Consensus 649 ~~~~~~~sGa-~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~d~--~g~iD~e~L~~~i~ 725 (985)
..++..++|+ +|... +++.+ .+++|.|+++++.+..+...++..|.+++.+|.++ +..+|+++++++++
T Consensus 91 ~~~i~it~G~~~al~~---~~~~l-----~~~gd~vl~~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~ 162 (382)
T d1b5pa_ 91 PEETIVTVGGSQALFN---LFQAI-----LDPGDEVIVLSPYWVSYPEMVRFAGGVVVEVETLPEEGFVPDPERVRRAIT 162 (382)
T ss_dssp GGGEEEESHHHHHHHH---HHHHH-----CCTTCEEEEEESCCTHHHHHHHHTTCEEEEEECCGGGTTCCCHHHHHTTCC
T ss_pred cccceecCCHHHHHHH---HHHHh-----CCCCCEEEECCCCcHHHHHHHHHhcCeEEEEecccccccCCCHHHHHHhCC
Confidence 3455555554 44433 33332 14789999998888888888899999999998754 35789999999887
Q ss_pred hcCCCEEEEEEEcC-CCccccc--cCHHHHHHHHHHcCCEEEEEccccccc-cC-CCCCCcc--CCcEEEeCCccccccc
Q 001989 726 ANRDNLSTLMVTYP-STHGVYE--EGIDEICKIIHDNGGQVYMDGANMNAQ-VG-LTSPGYI--GADVCHLNLHKTFCIP 798 (985)
Q Consensus 726 ~~~~~t~~Vvv~~p-n~~G~i~--~di~eI~~la~~~galliVD~a~~~~~-~~-l~~pg~~--g~Di~~~s~hK~l~~p 798 (985)
++++++++++| |++|.+. .++++|.++|+++|++++.|.++..-. .+ ...+... .--+++.|+.|+|+.|
T Consensus 163 ---~~~~~i~~~~P~NPTG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~ 239 (382)
T d1b5pa_ 163 ---PRTKALVVNSPNNPTGAVYPKEVLEALARLAVEHDFYLVSDEIYEHLLYEGEHFSPGRVAPEHTLTVNGAAKAFAMT 239 (382)
T ss_dssp ---TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCGGGTCTTTEEEEEESTTTTTCG
T ss_pred ---CCCeEEEECCCCCCcchhCCHHHHHHHHHHHHHcCeEEEEEccccceecCCCCCCHHHcCCCCEEEEecchhhccCc
Confidence 88999999999 5799885 358899999999999999999874211 11 0111111 1236777888988654
Q ss_pred CCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHH--hcHHHHHHHHHHHH
Q 001989 799 HGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAM--MGSKGLTEASKIAI 876 (985)
Q Consensus 799 ~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~--lg~eGl~~~~~~~~ 876 (985)
|.++|++++++++.+.+.... ... ..+.+...+. .+.+.+.. ....-+....+...
T Consensus 240 ----GlR~G~~~~~~~~i~~~~~~~------------~~~--~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 297 (382)
T d1b5pa_ 240 ----GWRIGYACGPKEVIKAMASVS------------RQS--TTSPDTIAQW----ATLEALTNQEASRAFVEMAREAYR 297 (382)
T ss_dssp ----GGCCEEEECCHHHHHHHHHHH------------HTT--TCSCCHHHHH----HHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred ----HhheEEEEECHHHHHHHHHHH------------Hhc--ccCccccccc----ccccccccccchhHHHHHHHHHHH
Confidence 778999998876654321100 000 1111100011 11111111 11122223333445
Q ss_pred HHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCC-CCCCCCCEEEEeccCCCC
Q 001989 877 LNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPT-MSWPVPGTLMIEPTESES 954 (985)
Q Consensus 877 ~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~-~~~p~~~~lris~t~~~t 954 (985)
.+.+++.+.+.+ ++.+. .+.+.++ +.+++++ .+.+...+.+.|.++||.+.. ..|...+.+|+++. .+
T Consensus 298 ~~~~~~~~~l~~~g~~~~--~p~gg~~--~~~~~~~----~~~~~~~~~~~l~e~gV~v~PG~~F~~~~~iRis~~--~~ 367 (382)
T d1b5pa_ 298 RRRDLLLEGLTALGLKAV--RPSGAFY--VLMDTSP----IAPDEVRAAERLLEAGVAVVPGTDFAAFGHVRLSYA--TS 367 (382)
T ss_dssp HHHHHHHHHHHHHTCCBC--CCSBTTE--EEEECTT----TCSSHHHHHHHHHHTTEECEESGGGTCTTEEEEECC--SC
T ss_pred hhhhHHHHHHhhcCCeEe--cCCceEE--EeEeCCC----CCCCHHHHHHHHHHCCEEEEeCcccCCCCeEEEEEc--CC
Confidence 556677777766 55543 2233333 3466642 245678899999999998643 33445689999985 47
Q ss_pred HHHHHHHHccCChhHH
Q 001989 955 KSWTGIVMLSSPSEKK 970 (985)
Q Consensus 955 ~eeId~~~~~~~l~~~ 970 (985)
+|+|++ .++.|+++
T Consensus 368 ~e~l~~--al~rl~~~ 381 (382)
T d1b5pa_ 368 EENLRK--ALERFARV 381 (382)
T ss_dssp HHHHHH--HHHHGGGG
T ss_pred HHHHHH--HHHHHHHh
Confidence 888877 55555543
|
| >d1c4ka2 c.67.1.5 (A:108-569) Ornithine decarboxylase major domain {Lactobacillus sp., strain 30a [TaxId: 1591]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Ornithine decarboxylase major domain domain: Ornithine decarboxylase major domain species: Lactobacillus sp., strain 30a [TaxId: 1591]
Probab=99.75 E-value=2.8e-17 Score=190.26 Aligned_cols=313 Identities=12% Similarity=0.065 Sum_probs=184.3
Q ss_pred HHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHH-HCCcEEE--EEcCC
Q 001989 634 FNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAA-MCGMKIV--SVGTD 710 (985)
Q Consensus 634 ~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~-~~G~~vv--~v~~d 710 (985)
+.|+|+.+|+++|.+.+.|++|++++++.++++++. +++|+||++...|.+....+. +.+..++ .+++|
T Consensus 68 i~eae~~~A~~~ga~~a~f~~~Gtt~~n~a~i~a~~--------~~gd~Vi~~~~~H~Sv~~~~~~l~~~~~~~~~~~~~ 139 (462)
T d1c4ka2 68 AVAAEKHAARVYNADKTYFVLGGSSNANNTVTSALV--------SNGDLVLFDRNNHKSVYNSALAMAGGRPVYLQTNRN 139 (462)
T ss_dssp HHHHHHHHHHHTTCSEEEEESSHHHHHHHHHHHHHC--------CTTCEEEEETTCCHHHHHHHTTTTCCEEEEECEEEC
T ss_pred HHHHHHHHHHHhCCCeEEEECCchHHHHHHHHHHhc--------CCCCeEEecccchHHHHHHHHHHhcCCceeeecccc
Confidence 778999999999998876666666666655554432 478999999998877655443 3344443 34445
Q ss_pred CCC--------CCCHHHHHHHHHh------cCCCEE-EEEEEcCCCccccccCHHHHHHHHHHcCCEEEEEccccccccC
Q 001989 711 AKG--------NINIEELRKAAEA------NRDNLS-TLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVG 775 (985)
Q Consensus 711 ~~g--------~iD~e~L~~~i~~------~~~~t~-~Vvv~~pn~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~ 775 (985)
+.| .++.+.+++.+.+ ..++++ +++++.||+.|.+. |+++|+++||++|++|+||+||..+...
T Consensus 140 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~G~~~-dl~~I~~ia~~~g~~l~vD~A~~~~~~~ 218 (462)
T d1c4ka2 140 PYGFIGGIYDSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQLGTYDGTIY-NAHEVVKRIGHLCDYIEFDSAWVGYEQF 218 (462)
T ss_dssp TTCCEEEECGGGSCHHHHHHHTTTSSHHHHTCSCCBSEEEEESBCTTSEEE-CHHHHHHHHGGGBSEEEEECTTCCGGGS
T ss_pred cccccCCCChHHhhHHHHHhhhhhhcHHhhhccCCceeEEEEeeeeccchh-hHHHHHHHHHHcCCEEEEechhhccccc
Confidence 443 3455555444321 013343 45566788999998 9999999999999999999998543322
Q ss_pred CC-CC-----------CccCCcEEEeCCcccccccCCCCCCc-eEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCC
Q 001989 776 LT-SP-----------GYIGADVCHLNLHKTFCIPHGGGGPG-MGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTI 842 (985)
Q Consensus 776 l~-~p-----------g~~g~Di~~~s~hK~l~~p~g~GGPg-~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i 842 (985)
.. .+ .+.++|++++|+||+++ +++ ++++..++.............. .++.. ..+.+.
T Consensus 219 ~~~~~~~~~~~g~~~~~~~~~D~~~~S~HK~lg------~~~~g~ll~~~~~~~~~~~~~~~~~~---~~~~~-~~~~t~ 288 (462)
T d1c4ka2 219 IPMMRNSSPLLIDDLGPEDPGIIVVQSVHKQQA------GFSQTSQIHKKDSHIKGQLRYCDHKH---FNNSF-NLFMST 288 (462)
T ss_dssp SGGGGGGCTTSCCCCCTTSCEEEEEECHHHHSS------CCTTCEEEEEECGGGTTSTTCCCHHH---HHHHH-HHHSCS
T ss_pred cCcCCcchhhccccccccCCccEEEEecCcccc------cccceEEEEeccccccccchhhhHHH---HHHhh-hhcccC
Confidence 10 01 12346999999999984 343 3455555544432221100000 00000 000011
Q ss_pred CCcchhhhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhccCCee--e-----cC-------------------
Q 001989 843 AAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPIL--F-----RG------------------- 896 (985)
Q Consensus 843 ~s~~~g~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~g~~l~--~-----~~------------------- 896 (985)
+.+ +.....+.++ ...+..++.++..++..++++++++++.+..... . .+
T Consensus 289 sp~-~~~~asl~~a---~~~~~~~~g~~l~~~~~~~a~~~r~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 364 (462)
T d1c4ka2 289 SPF-YPMYAALDVN---AAMQEGEAGRKLWHDLLITTIEARKKLIKAGSMFRPFVPPVVNGKKWEDGDTEDMANNIDYWR 364 (462)
T ss_dssp SCC-HHHHHHHHHH---HHHHSHHHHHHHHHHHHHHHHHHHHHHHHTTCSSEESSCSEETTEEGGGSCHHHHTTCGGGGB
T ss_pred Cch-HHHHHHHHHH---HHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccccccccccchHhhhcccchhc
Confidence 111 1122222222 2334444456667778889999999987521110 0 00
Q ss_pred --C----------C-Ccee---eEEEEEecCc------cccCCCCHHHHHHHHHHCCCccCCCCCCCCCEEEEeccCCCC
Q 001989 897 --V----------N-GTVA---HEFIVDLRGL------KNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESES 954 (985)
Q Consensus 897 --~----------~-~~~~---~~~iv~~~~~------~~~~g~~~~~v~~~L~~~Gi~~~~~~~p~~~~lris~t~~~t 954 (985)
+ . +... .-+.+..+++ ....|+++.++.+.|.++||.+.... .+.+|++++..+|
T Consensus 365 ~~~~~~~~~~~~~~~~~~~~Dp~k~~l~~~gi~~~~g~~~~~G~~~~~~~~~L~~~gI~~e~~~---~~~i~~~~s~~~T 441 (462)
T d1c4ka2 365 FEKGAKWHAYEGYGDNQYYVDPNKFMLTTPGINPETGDYEDFGVPATIVANYLRDHGIIPEKSD---LNSILFLMTPAET 441 (462)
T ss_dssp CCTTCTTTCCTTCCTTCEEECTTEEEEECSSEETTTTEECSSCCCHHHHHHHHHHTTCCCSEEC---SSEEEEECCTTCC
T ss_pred cCCcchhccccccCccceecccceeEEecCCccccccchhhcCCcHHHHHHHHHHcCCeeeccC---CCeEEEEecCCCC
Confidence 0 0 0000 0022332221 01235678999999999999764332 3689999999999
Q ss_pred HHHHHHHHccCChhHHHHhh
Q 001989 955 KSWTGIVMLSSPSEKKLHRL 974 (985)
Q Consensus 955 ~eeId~~~~~~~l~~~~~~~ 974 (985)
+||||+ ++++|+++...+
T Consensus 442 ~edid~--li~aL~ei~r~~ 459 (462)
T d1c4ka2 442 PAKMNN--LITQLLQLQRLI 459 (462)
T ss_dssp HHHHHH--HHHHHHHHHHHH
T ss_pred HHHHHH--HHHHHHHHHHHH
Confidence 999999 778888876544
|
| >d1gdea_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.74 E-value=1.2e-17 Score=188.66 Aligned_cols=337 Identities=16% Similarity=0.188 Sum_probs=201.6
Q ss_pred cccccccccCCCcccccccccccccc-ccCCCCchhhhhhHHHHHHHHHHHHHHHhCCCc---ccee-cCcHHHHHHHHH
Q 001989 591 MIPLGSCTMKLNATTEMMPVTWPSFA-NIHPFAPADQAQGYQEMFNNLGEWLCTITGFDS---FSLQ-PNAGAAGEYAGL 665 (985)
Q Consensus 591 ~~~lG~~t~~~~~~~~~~~~~~~~f~-~~~p~~p~e~~~G~~~~~~e~~~~la~l~G~~~---~~~~-~~sGa~a~~a~l 665 (985)
++.||.+.|.+++..+...+...... ..+.|.| .+|..++.+.+.+++.+..+... ..+. .+++.++...++
T Consensus 27 vi~l~~g~p~~~~p~~v~~~~~~a~~~~~~~Y~~---~~G~~~lr~aia~~~~~~~~~~~~~~~~i~~t~G~~~~l~~~~ 103 (388)
T d1gdea_ 27 VISLGIGEPDFDTPQHIKEYAKEALDKGLTHYGP---NIGLLELREAIAEKLKKQNGIEADPKTEIMVLLGANQAFLMGL 103 (388)
T ss_dssp CEECCCCSCCSCCCHHHHHHHHHHHHTTCCSCCC---TTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESSTTHHHHHHH
T ss_pred eEECCCCCCCCCCCHHHHHHHHHHHhcCccCCCC---CcCCHHHHHHHHHHHHhhccccCCChheeeeccCcchHHHHHH
Confidence 67888877766554332221110100 1222333 46776666666666666555422 3344 444444443322
Q ss_pred HHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcCCC--CCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCc
Q 001989 666 MVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDA--KGNINIEELRKAAEANRDNLSTLMVTYP-STH 742 (985)
Q Consensus 666 ~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~d~--~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~ 742 (985)
.++ ..++|+|+++.+.|..+...++..|++++.+|.++ ++.+|+++|+++++ ++++++++++| |++
T Consensus 104 ~~l--------~~~gd~vlv~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~---~~~~~i~~~~P~NPt 172 (388)
T d1gdea_ 104 SAF--------LKDGEEVLIPTPAFVSYAPAVILAGGKPVEVPTYEEDEFRLNVDELKKYVT---DKTRALIINSPCNPT 172 (388)
T ss_dssp TTT--------CCTTCEEEEEESCCTTHHHHHHHHTCEEEEEECCGGGTTCCCHHHHHHHCC---TTEEEEEEESSCTTT
T ss_pred HHh--------cCCCCEEEECCCCcHHHHHHHHHcCCEEEEeecccccCCCCCHHHHHHhCc---cCCeEEEECCCcCCC
Confidence 222 14789999999888888888889999999999864 35899999999987 78999999999 579
Q ss_pred cccc--cCHHHHHHHHHHcCCEEEEEccccccc-cCCC--C----CCccCCcEEEeCCcccccccCCCCCCceEEEEEcc
Q 001989 743 GVYE--EGIDEICKIIHDNGGQVYMDGANMNAQ-VGLT--S----PGYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKK 813 (985)
Q Consensus 743 G~i~--~di~eI~~la~~~galliVD~a~~~~~-~~l~--~----pg~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~ 813 (985)
|.+. .++++|.++|+++|+++++|+++..-. .+-. . +....-.+++.|++|+|+.| |.++|++++.+
T Consensus 173 G~~~s~~~~~~l~~~a~~~~~~vi~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~----GlR~G~ii~~~ 248 (388)
T d1gdea_ 173 GAVLTKKDLEEIADFVVEHDLIVISDEVYEHFIYDDARHYSIASLDGMFERTITVNGFSKTFAMT----GWRLGFVAAPS 248 (388)
T ss_dssp CCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTTCGGGEEEEEESTTTTTCG----GGCCEEEECCH
T ss_pred CCcCCHHHHHHHHHHHHHcCCEEEEEcCChhhhhccCCCCChhhccCCCCeEEEEeCChhhccCc----cccEEEEEeec
Confidence 9985 258899999999999999999974211 1100 0 01112347788889988654 77899999887
Q ss_pred cccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHh-cHHHHHHHHHHHHHHHHHHHHHhhc-cCC
Q 001989 814 HLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMM-GSKGLTEASKIAILNANYMAKRLEK-HYP 891 (985)
Q Consensus 814 ~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~l-g~eGl~~~~~~~~~~a~~l~~~L~~-g~~ 891 (985)
++...+.... .....+++...+ .++..++..- ..+-+.+..+...++...+.+.|.. ++.
T Consensus 249 ~~~~~~~~~~--------------~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 310 (388)
T d1gdea_ 249 WIIERMVKFQ--------------MYNATCPVTFIQ----YAAAKALKDERSWKAVEEMRKEYDRRRKLVWKRLNEMGLP 310 (388)
T ss_dssp HHHHHHHHHH--------------HTTTCSCCHHHH----HHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred cchhhhhhcc--------------ccccccccccch----hhHHHHHhhccchhHHHHHHHHHHHhhhhhhhhhhhcccc
Confidence 6554331100 000111110111 1111122110 0112233333445556667777765 343
Q ss_pred eeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHH-HCCCccCC-CCCC--CCCEEEEeccCCCCHHHHHHHHccCCh
Q 001989 892 ILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLM-DYGFHGPT-MSWP--VPGTLMIEPTESESKSWTGIVMLSSPS 967 (985)
Q Consensus 892 l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~-~~Gi~~~~-~~~p--~~~~lris~t~~~t~eeId~~~~~~~l 967 (985)
.. .+.+..+ +.++++. .+.+..+++++|. ++||.+.+ ..|. .++++||++. .++|+|++ .++.|
T Consensus 311 ~~--~p~gg~f--l~~~l~~----~~~~~~~~~~~ll~e~gV~v~PG~~F~~~~~~~iRis~~--~~~e~l~~--al~rL 378 (388)
T d1gdea_ 311 TV--KPKGAFY--IFPRIRD----TGLTSKKFSELMLKEARVAVVPGSAFGKAGEGYVRISYA--TAYEKLEE--AMDRM 378 (388)
T ss_dssp CC--CCCBTTE--ECCBCGG----GTCCHHHHHHHHHHHTCEECEEGGGGCGGGTTBEEEECC--SCHHHHHH--HHHHH
T ss_pred cc--CCCceEE--EEEECCC----CCCCHHHHHHHHHHhCCEEEEechhhCCCCCCEEEEEec--CCHHHHHH--HHHHH
Confidence 32 2223332 3345441 2567889988865 56987642 2232 3588999985 57889999 77888
Q ss_pred hHHHHhhc
Q 001989 968 EKKLHRLK 975 (985)
Q Consensus 968 ~~~~~~~~ 975 (985)
++++++.|
T Consensus 379 ~~~l~e~k 386 (388)
T d1gdea_ 379 ERVLKERK 386 (388)
T ss_dssp HHHHHHTT
T ss_pred HHHHHhcC
Confidence 88888765
|
| >d1v2da_ c.67.1.1 (A:) Glutamine aminotransferase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Glutamine aminotransferase species: Thermus thermophilus [TaxId: 274]
Probab=99.73 E-value=4.2e-17 Score=182.82 Aligned_cols=338 Identities=12% Similarity=0.065 Sum_probs=204.8
Q ss_pred HHHHHHHHHhccccCcccccccccccccCCCccccccccccccccccCCCCchhhhhhHHHHHHHHHHHHHHHhCCCccc
Q 001989 572 ELLRYIHLLQSKELSLCHSMIPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFDSFS 651 (985)
Q Consensus 572 e~~~~l~~l~~~~~~~~~~~~~lG~~t~~~~~~~~~~~~~~~~f~~~~p~~p~e~~~G~~~~~~e~~~~la~l~G~~~~~ 651 (985)
-+..+|..++++. ++|.||.+.|..++......+........+.|.+ .+|. .++++.+++.++.+...
T Consensus 13 ~~~~~~~~la~~~-----~~I~ls~g~p~~~~p~~i~~al~~~l~~~~~Y~~---~~G~----~elr~aiA~~~~~~~~~ 80 (368)
T d1v2da_ 13 SIFPRMSGLAQRL-----GAVNLGQGFPSNPPPPFLLEAVRRALGRQDQYAP---PAGL----PALREALAEEFAVEPES 80 (368)
T ss_dssp -CHHHHHHHHHHH-----TCEECCCCSCSSCCCHHHHHHHHHHTTTSCSCCC---TTCC----HHHHHHHHHHHTSCGGG
T ss_pred CHHHHHHHHhccC-----CCEEecCCCCCCCCCHHHHHHHHHHhhcccCCCC---CcCC----HHHHHHHHhhcccCCcc
Confidence 3445666777653 4677887777655533332211111111223333 2453 36778899999998876
Q ss_pred eec-CcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcCC---CCCCCCHHHHHHHHHhc
Q 001989 652 LQP-NAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTD---AKGNINIEELRKAAEAN 727 (985)
Q Consensus 652 ~~~-~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~d---~~g~iD~e~L~~~i~~~ 727 (985)
+.. ++++++...+ ++.+ ..+++.|+++++.|..+...+...|.+++.++++ .++.+|+++++++++
T Consensus 81 Iiit~G~~~al~~~---~~~l-----~~~~d~v~~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~~~-- 150 (368)
T d1v2da_ 81 VVVTSGATEALYVL---LQSL-----VGPGDEVVVLEPFFDVYLPDAFLAGAKARLVRLDLTPEGFRLDLSALEKALT-- 150 (368)
T ss_dssp EEEESSHHHHHHHH---HHHH-----CCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECEEETTEEECCHHHHHTTCC--
T ss_pred eeeccchHHHHHHH---hhcc-----ccccccccccCCcchhhhhHHHhcCCccceeccccccccccCCHHHHHHhhc--
Confidence 544 4455555333 3332 1467899998888877777788899999888774 236799999999987
Q ss_pred CCCEEEEEEEcC-CCccccc--cCHHHHHHHHHHcCCEEEEEccccccccCCCCCC----ccCCcEEEeCCcccccccCC
Q 001989 728 RDNLSTLMVTYP-STHGVYE--EGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPG----YIGADVCHLNLHKTFCIPHG 800 (985)
Q Consensus 728 ~~~t~~Vvv~~p-n~~G~i~--~di~eI~~la~~~galliVD~a~~~~~~~l~~pg----~~g~Di~~~s~hK~l~~p~g 800 (985)
++++++++++| |++|.+. .++++|+++|+++|+++++|+++.........+. .....+++.++.|.++
T Consensus 151 -~~~~~i~~~~p~NPtG~~~~~~~l~~l~~~a~~~~i~ii~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sk~~~---- 225 (368)
T d1v2da_ 151 -PRTRALLLNTPMNPTGLVFGERELEAIARLARAHDLFLISDEVYDELYYGERPRRLREFAPERTFTVGSAGKRLE---- 225 (368)
T ss_dssp -TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCHHHHCTTTEEEEEEHHHHTT----
T ss_pred -cCceEEEEcCCCCcccccCCHHHHHHHHHHHHHcCCeeeechhhhhhcccccccccccccccccceeeccccccc----
Confidence 78999999999 4799986 2488899999999999999988642111111110 1123445556667664
Q ss_pred CCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcH-HHHHHHHHHHHHHH
Q 001989 801 GGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGS-KGLTEASKIAILNA 879 (985)
Q Consensus 801 ~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~-eGl~~~~~~~~~~a 879 (985)
..|.++|++++++++.+.+.... ...+.+++...+.. +...+..... +.+.+..+...+++
T Consensus 226 ~~G~R~g~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~q~~----~~~~l~~~~~~~~~~~~~~~~~~~~ 287 (368)
T d1v2da_ 226 ATGYRVGWIVGPKEFMPRLAGMR--------------QWTSFSAPTPLQAG----VAEALKLARREGFYEALREGYRRRR 287 (368)
T ss_dssp CGGGCCEEEECCTTTHHHHHHHH--------------HHHTSSCCHHHHHH----HHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred ccccccccccccccccchhhhhh--------------hccccccccccccc----cccccccccchhhHHHHHHHHHHhh
Confidence 34778999998877654432110 00011111111111 1122222111 23445555567788
Q ss_pred HHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCC---CC--CCCCCEEEEeccCCC
Q 001989 880 NYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPT---MS--WPVPGTLMIEPTESE 953 (985)
Q Consensus 880 ~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~---~~--~p~~~~lris~t~~~ 953 (985)
+++.+.|++ ++.+. .+.+..+ +.++++ +.+.. +.|.++||.+.+ +. .+..+++||++. +
T Consensus 288 ~~l~~~l~~~g~~~~--~p~g~~~--~~~~l~------~~~~~---~ll~~~gI~v~pg~~F~~~~~~~~~iRis~~--~ 352 (368)
T d1v2da_ 288 DLLAGGLRAMGLRVY--VPEGTYF--LMAELP------GWDAF---RLVEEARVALIPASAFYLEDPPKDLFRFAFC--K 352 (368)
T ss_dssp HHHHHHHHHTTCCEE--CCSBSSE--EEEECT------TCCHH---HHHHHTCEECEEGGGGCSSSCCTTEEEEECC--S
T ss_pred hhhhhhHHhcCcEEe--cCCceeE--EEEeCC------ccHHH---HHHHhCCEEEEechhhCCCCCCCCEEEEEec--C
Confidence 899999987 56653 2223332 345654 34444 457789998742 11 133589999975 5
Q ss_pred CHHHHHHHHccCChhHHH
Q 001989 954 SKSWTGIVMLSSPSEKKL 971 (985)
Q Consensus 954 t~eeId~~~~~~~l~~~~ 971 (985)
++|+|++ ++++|++++
T Consensus 353 ~~e~i~~--ai~rL~~~l 368 (368)
T d1v2da_ 353 TEEELHL--ALERLGRVV 368 (368)
T ss_dssp CHHHHHH--HHHHHHHHC
T ss_pred CHHHHHH--HHHHHHHhC
Confidence 7899999 777777653
|
| >d1iuga_ c.67.1.3 (A:) Subgroup IV putative aspartate aminotransferase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Subgroup IV putative aspartate aminotransferase species: Thermus thermophilus [TaxId: 274]
Probab=99.73 E-value=6.4e-17 Score=179.94 Aligned_cols=306 Identities=11% Similarity=0.057 Sum_probs=195.6
Q ss_pred hhHHHHHHHHHHHHHHHhCCCcc-ceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccH----HHHHHCCc
Q 001989 628 QGYQEMFNNLGEWLCTITGFDSF-SLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNP----ATAAMCGM 702 (985)
Q Consensus 628 ~G~~~~~~e~~~~la~l~G~~~~-~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~----~~a~~~G~ 702 (985)
....++++++++.++++++.+.. .++.+||+.++++++..+. .+++++++... |.+. ..++..|.
T Consensus 29 ~~f~~i~~~~~~~l~~ll~~~~~~i~~~gsgT~a~e~~~~nl~--------~~g~~vlv~~~--G~f~~~~~~~a~~~~~ 98 (348)
T d1iuga_ 29 EAAREVFLKARGLLREAFRTEGEVLILTGSGTLAMEALVKNLF--------APGERVLVPVY--GKFSERFYEIALEAGL 98 (348)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSSEEEEEESCHHHHHHHHHHHHC--------CTTCEEEEEEC--SHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCEEEEeCchHHHHHHHHHhcc--------cccccceeecc--hHHHHHHHHHHHhcCc
Confidence 34567888999999999998763 4566788888766655331 36778877544 3343 23567888
Q ss_pred EEEEEcCCCCCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccCHHHHHHHHHHcC--CEEEEEccccccccCCCCC
Q 001989 703 KIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDNG--GQVYMDGANMNAQVGLTSP 779 (985)
Q Consensus 703 ~vv~v~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~g--alliVD~a~~~~~~~l~~p 779 (985)
++..++.++...++++++ .+ ++++.|++++. +.+|++. |+++|+++|++++ ++++||++++.+...+ +.
T Consensus 99 ~~~~~~~~~g~~~~~~~~---~~---~~~~~v~~~h~eTstG~~~-~i~~i~~~~~~~~~~~l~~vDavss~g~~~i-~~ 170 (348)
T d1iuga_ 99 VVERLDYPYGDTPRPEDV---AK---EGYAGLLLVHSETSTGALA-DLPALARAFKEKNPEGLVGADMVTSLLVGEV-AL 170 (348)
T ss_dssp EEEEEECCTTCCCCTTTS---CC---SSCSEEEEESEETTTTEEC-CHHHHHHHHHHHCTTCEEEEECTTTBTTBCC-CS
T ss_pred ccccccccCCCccccccc---cc---cCCCeeEEEecchhhhhhc-cHHHHHHHHHhhhccceeechhhhccccccc-cc
Confidence 888888766555554432 12 56677888876 5689999 8999999999874 8999999986554443 56
Q ss_pred CccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCC---CCCCCCCCCCCCCCcchhhhHHHHHH
Q 001989 780 GYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGI---PAPEKSQPLGTIAAAPWGSALILPIS 856 (985)
Q Consensus 780 g~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~---~~~~~~~~~~~i~s~~~g~~~~~~~a 856 (985)
..+++|++++++||+|+ |.||+|++++++++.+.++.+.+.. |. ........+.+++. . ..+.+.
T Consensus 171 d~~~iD~~~~~sqK~l~-----gppG~~~v~~s~~~le~~~~~~~~~--dl~~~~~~~~~~~~~~Tp~----v-~~i~~l 238 (348)
T d1iuga_ 171 EAMGVDAAASGSQKGLM-----CPPGLGFVALSPRALERLKPRGYYL--DLARELKAQKEGESAWTPA----I-NLVLAV 238 (348)
T ss_dssp GGGTCSEEEEESSSTTC-----CCSCEEEEEECHHHHHTCCCCSSTT--CHHHHHHHHTTTCCSSCCC----H-HHHHHH
T ss_pred ccccCCEEEecccccee-----cCCceeeeeechHHHhhhccccccc--chhhhhhhhccCccccccc----c-hHHHHH
Confidence 78899999999999995 3469999999988776665432111 10 00000111112111 1 111112
Q ss_pred HHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccC
Q 001989 857 YTYIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGP 935 (985)
Q Consensus 857 ~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~ 935 (985)
..+|+.+..++.+.. ++.......+++.++. ++.+. +. ......+.+.++ .|++..++.+.|.++|+.+.
T Consensus 239 ~~aL~~~~~~~~~~~-~~~~~~~~~~~~~~~~~gl~~~-~~--~~s~~v~~~~~P-----~g~~~~~~~~~l~~~gi~i~ 309 (348)
T d1iuga_ 239 AAVLEEVLPRLEEHL-ALKAWQNALLYGVGEEGGLRPV-PK--RFSPAVAAFYLP-----EGVPYARVKEAFAQRGAVIA 309 (348)
T ss_dssp HHHHHHHGGGHHHHH-HHHHHHHHHHHHHHHHTTCEES-CS--SBCTTCEEEECC-----TTCCHHHHHHHHHTTTEECE
T ss_pred HHHHHHHHHHHhHHH-HHHHHHHHHHhhhhhhhhhccC-hh--hcCCeEEEEECC-----CCCCHHHHHHHHHHCCeEEE
Confidence 244555544554433 3333334455555444 44432 11 111112445654 37889999999999998875
Q ss_pred CCCCCCC-CEEEEeccCCCCHHHHHHHHccCChhHHHHhh
Q 001989 936 TMSWPVP-GTLMIEPTESESKSWTGIVMLSSPSEKKLHRL 974 (985)
Q Consensus 936 ~~~~p~~-~~lris~t~~~t~eeId~~~~~~~l~~~~~~~ 974 (985)
.-..+.. ..+||+-.-+++.+|+++ +++.|+++++++
T Consensus 310 ~G~~~l~~~~~RIg~mG~~~~~d~~~--~~~~l~~~l~~~ 347 (348)
T d1iuga_ 310 GGQGPLKGKVFRLSLMGAYDRYEALG--VAGMFREVLEEI 347 (348)
T ss_dssp ECCGGGTTTEEEECCCSSCCHHHHHH--HHHHHHHHHHHH
T ss_pred cCccccCCCEEEEeCCCCCCHHHHHH--HHHHHHHHHHHh
Confidence 3222333 579999767899999999 788999988764
|
| >d1gc0a_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Pseudomonas putida [TaxId: 303]
Probab=99.73 E-value=1.5e-16 Score=177.22 Aligned_cols=213 Identities=19% Similarity=0.170 Sum_probs=165.8
Q ss_pred HHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCch---hh
Q 001989 215 NFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDLK---DI 291 (985)
Q Consensus 215 e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~~---~l 291 (985)
.+++.||+|.|.+. +.++.+|.+++.++++++. ++||+||+++..+......++.+.+.+|+++.++|+. ++
T Consensus 63 ~LE~~la~LEg~~~--a~~~~SGmaAi~~~l~~l~---~~Gd~vl~~~~~Yg~t~~l~~~~~~~~Gi~~~~~d~~d~~~~ 137 (392)
T d1gc0a_ 63 LLEARMASLEGGEA--GLALASGMGAITSTLWTLL---RPGDEVLLGNTLYGCTFAFLHHGIGEFGVKLRHVDMADLQAL 137 (392)
T ss_dssp HHHHHHHHHHTCSE--EEEESSHHHHHHHHHHHHC---CTTCEEEEESSCCSHHHHHHHHTGGGGTCEEEEECTTCHHHH
T ss_pred HHHHHHHHHhCCcc--eeehhhHHHHHHHHHHhhc---cCCCeeecccccchhhhhhhhhhhccCCcccccCCccCHHHH
Confidence 46689999999876 6778999999888888763 3899999999999999999988888999999999875 45
Q ss_pred hc-cCCCEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCCCCCcccceEEEecC-ccccccCCCCCC
Q 001989 292 DY-KSGDVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKPPGELGADIVVGSA-QRFGVPMGYGGP 368 (985)
Q Consensus 292 ~~-l~~~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~~~~~~GaDi~v~s~-k~lg~P~~~GGP 368 (985)
++ ++++|++|++..| |++..+.||++|+++||++|++++|| +.++-+++.+|-++||||++.|+ |.+++ .|..
T Consensus 138 ~~ai~~~t~lv~~Esp~NP~l~v~Di~~i~~ia~~~g~~~vvD-nT~atP~~~~Pl~~GaDivihS~TKyi~G---hsd~ 213 (392)
T d1gc0a_ 138 EAAMTPATRVIYFESPANPNMHMADIAGVAKIARKHGATVVVD-NTYCTPYLQRPLELGADLVVHSATKYLSG---HGDI 213 (392)
T ss_dssp HHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHGGGTCEEEEE-CTTTHHHHCCGGGGTCSEEEEETTTTTTC---SSSC
T ss_pred HHhCCCCCeEEEecccccceeeecchHHHHHHHHhcCCEEEEe-cCccCccccChHHhCCCEEEEecceeecC---Cccc
Confidence 55 8999999999998 89999999999999999999999994 67787888899999999999998 87764 2333
Q ss_pred cEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcchHHHHHH
Q 001989 369 HAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQ 448 (985)
Q Consensus 369 ~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~ 448 (985)
-.|.+.++++.+.++. ....|+..|..- ++. ..|+...|.+-+..+.+
T Consensus 214 ~~G~v~~~~~~~~~~r-----------------------~~~~~~~~G~~~----~p~-----da~ll~rgl~TL~lRm~ 261 (392)
T d1gc0a_ 214 TAGIVVGSQALVDRIR-----------------------LQGLKDMTGAVL----SPH-----DAALLMRGIKTLNLRMD 261 (392)
T ss_dssp CCEEEEECHHHHHHHH-----------------------HTHHHHHTCCCC----CHH-----HHHHHHHHHTTHHHHHH
T ss_pred ccccccchhHHHHHHH-----------------------HHHHHHccCCcC----Chh-----hHHHHHhccccHHHHHH
Confidence 4578888876654320 011111111100 111 22445666677788889
Q ss_pred HHHHHHHHHHHHHhcCCCeE
Q 001989 449 RVHGLAGTFALGLKKLGTVE 468 (985)
Q Consensus 449 ~~~~~a~~l~~~L~~~g~~~ 468 (985)
+..++|..+++.|++...++
T Consensus 262 ~~~~nA~~lA~~L~~hp~V~ 281 (392)
T d1gc0a_ 262 RHCANAQVLAEFLARQPQVE 281 (392)
T ss_dssp HHHHHHHHHHHHHHTCTTEE
T ss_pred HHHHHHHHHHHHHHhCCCcc
Confidence 99999999999999875455
|
| >d1y4ia1 c.67.1.3 (A:2-398) Methionine gamma-lyase, MGL {Citrobacter freundii [TaxId: 546]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Citrobacter freundii [TaxId: 546]
Probab=99.72 E-value=2.3e-16 Score=175.77 Aligned_cols=274 Identities=16% Similarity=0.112 Sum_probs=195.4
Q ss_pred HHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCch---h
Q 001989 214 LNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDLK---D 290 (985)
Q Consensus 214 ~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~~---~ 290 (985)
..+++.+|+|.|.+. +.++++|.+|+.++++++. ++||+||+++..+......+....+.+|+++.++|.. +
T Consensus 66 ~~LE~~la~LEgg~~--a~~~sSGmaAi~~~l~~ll---~~Gd~vi~~~~~Yg~t~~~~~~~l~~~Gi~~~~vd~~d~~~ 140 (397)
T d1y4ia1 66 DALEKKLAVLERGEA--GLATASGISAITTTLLTLC---QQGDHIVSASAIYGCTHAFLSHSMPKFGINVRFVDAGKPEE 140 (397)
T ss_dssp HHHHHHHHHHHTCSE--EEEESSHHHHHHHHHHHHC---CTTCEEEEESSSCHHHHHHHHTHHHHTTCEEEEECTTSHHH
T ss_pred HHHHHHHHHHhCCcc--ceeehHHHHHHHHHHhhcc---CCCCeeeeecccccccchhhhcccCCCceEeeccCCCCHHH
Confidence 346789999999876 6788999999888887762 3899999999999999988887777899999999874 4
Q ss_pred hhc-cCCCEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCCCCCcccceEEEecC-ccccccCCCCC
Q 001989 291 IDY-KSGDVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKPPGELGADIVVGSA-QRFGVPMGYGG 367 (985)
Q Consensus 291 l~~-l~~~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~~~~~~GaDi~v~s~-k~lg~P~~~GG 367 (985)
+++ ++++|++|++..| |++..+.||++|+++||++|++++|| +.++-+++..|.++||||++.|+ |.+++ .|.
T Consensus 141 ~~~~i~~~Tklv~~Esp~NP~l~v~Di~~i~~iA~~~gi~~vvD-nT~atP~~~~Pl~~GaDivihS~TKyi~G---hsd 216 (397)
T d1y4ia1 141 IRAAMRPETKVVYIETPANPTLSLVDIETVAGIAHQQGALLVVD-NTFMSPYCQQPLQLGADIVVHSVTKYING---HGD 216 (397)
T ss_dssp HHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEE-CTTTCTTTCCGGGGTCSEEEEETTTTTTC---SSC
T ss_pred HHHhcCCCCcEEEecCCcccceeecccHHHHHHhhcCCceEEec-CcccCcccCcchhcCCCEEEEehhhhcCC---Ccc
Confidence 556 8899999999998 89999999999999999999999994 67777888899999999999998 87864 344
Q ss_pred CcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcchHHHHH
Q 001989 368 PHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIA 447 (985)
Q Consensus 368 P~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i~ 447 (985)
.-+|.+.++++.+.+. |+ ...|+-.| .+. ++. ..|+...|-+-|.-+.
T Consensus 217 vl~G~v~~~~~~~~~~--r~---------------------~~~~~~~G--~~l--~p~-----~a~l~~rgl~TL~lRm 264 (397)
T d1y4ia1 217 VIGGIIVGKQEFIDQA--RF---------------------VGLKDITG--GCM--SPF-----NAWLTLRGVKTLGIRM 264 (397)
T ss_dssp CCCEEEEECHHHHHHH--HH---------------------THHHHTTC--CCC--CHH-----HHHHHHHHHTTHHHHH
T ss_pred eeeeccCCCHHHHHHH--HH---------------------HHHHhCcC--CcC--CHH-----HHHHHHcCcCcHHHHH
Confidence 4557888887655432 00 00011111 111 111 1234555556667788
Q ss_pred HHHHHHHHHHHHHHhcCCCeEEc-CC-----C-----------CcceEEEecCCHHHHHHHHHHc-Cce-----ee----
Q 001989 448 QRVHGLAGTFALGLKKLGTVEVQ-GL-----P-----------FFDTVKVKCADAHAIASAAYKI-EMN-----LR---- 500 (985)
Q Consensus 448 ~~~~~~a~~l~~~L~~~g~~~~~-~~-----~-----------~~~~~~~~~~~~~~v~~~L~~~-GI~-----~~---- 500 (985)
++..++|..+++.|++...++-+ .+ | +...|+|...+..+-.+++.++ .+. +.
T Consensus 265 ~~~~~nA~~lA~~L~~hp~V~~V~yPgl~s~p~h~~~~~~~~g~gg~~sf~~~~~~~~~~~f~~~L~l~~~a~SlGg~eS 344 (397)
T d1y4ia1 265 ERHCENALKIARFLEGHPSITRVYYPGLSSHPQYELGQRQMSLPGGIISFEIAGGLEAGRRMINSVELCLLAVSLGDTET 344 (397)
T ss_dssp HHHHHHHHHHHHHHHTCTTEEEEECTTSTTCTTHHHHHHHCSSCCSEEEEEETTHHHHHHHHHHTCSSSEECSCCSCSSC
T ss_pred HHHHHHHHHHHHHHHhCCCcCeEeCCCCCCCccccccccccCCCCeEEEEEecCCHHHHHHHHHcCCccceeeccCcccc
Confidence 88899999999999998556532 21 1 1235788776633323333332 321 10
Q ss_pred ----e-----------------ecCCeEEEEeccCCCHHHHHHHHHHHh
Q 001989 501 ----V-----------------VDSNTVTASFDETTTLEDVDKLFIVFA 528 (985)
Q Consensus 501 ----~-----------------~~~~~lris~t~~~t~edId~li~aL~ 528 (985)
+ +.++.||+|++.-+.++=|+.|-++|.
T Consensus 345 Li~~p~~~th~~~~~e~r~~~Gi~~~liRlsvGlEd~~DLi~Dl~~AL~ 393 (397)
T d1y4ia1 345 LIQHPASMTHSPVAPEERLKAGITDGLIRLSVGLEDPEDIINDLEHAIR 393 (397)
T ss_dssp EEECTTTTTTSSSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHH
T ss_pred eeeCccccccccCCHHHHHHcCCCcCEEEEEeccCCHHHHHHHHHHHHH
Confidence 0 124679999997666666667766665
|
| >d1vefa1 c.67.1.4 (A:9-395) Acetylornithine/acetyl-lysine aminotransferase ArgD {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Acetylornithine/acetyl-lysine aminotransferase ArgD species: Thermus thermophilus [TaxId: 274]
Probab=99.72 E-value=1.6e-16 Score=179.14 Aligned_cols=309 Identities=16% Similarity=0.178 Sum_probs=196.8
Q ss_pred ccccccccCCCccccccccccccccccCCCCchhhhhhHHHHHHHHHHHHHHHhCCCc-cceecCcHHHHHHHHHHHHHH
Q 001989 592 IPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFDS-FSLQPNAGAAGEYAGLMVIRA 670 (985)
Q Consensus 592 ~~lG~~t~~~~~~~~~~~~~~~~f~~~~p~~p~e~~~G~~~~~~e~~~~la~l~G~~~-~~~~~~sGa~a~~a~l~air~ 670 (985)
..||++++.+..+...+........+ .+.. +...++.+.+.+...... ..++.+||++|++++++.+|.
T Consensus 49 ~~lGh~hp~v~~a~~~~~~~~~~~~~--~~~~--------~~~~~la~~l~~~~~~~~~~v~f~~sGseA~e~Aik~Ar~ 118 (387)
T d1vefa1 49 ANLGHGNPEVVEAVKRQAETLMAMPQ--TLPT--------PMRGEFYRTLTAILPPELNRVFPVNSGTEANEAALKFARA 118 (387)
T ss_dssp CTTCBTCHHHHHHHHHHHHHCCCCCT--TSCC--------HHHHHHHHHHHHTSCTTEEEEEEESSHHHHHHHHHHHHHH
T ss_pred hhhcCCcHHHHHHHHHHHHhhccccc--ccCC--------chHHHHHHHhhhhccccceeeccccCchHHHHHHHHHHHh
Confidence 45888877776554433321111111 1111 223355555666554432 246778999999999999988
Q ss_pred HHHhcCCCCCCEEEE-cCCCCcccHHHHHHCC------------cEEEEEcCCCCCCCCHHHHHHHHHhcCCCEEEEEEE
Q 001989 671 YHKARGDHHRNVCII-PVSAHGTNPATAAMCG------------MKIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVT 737 (985)
Q Consensus 671 ~~~~~g~~~~~~IIv-~~~~Hg~~~~~a~~~G------------~~vv~v~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~ 737 (985)
|. .+.+|+. ...+||....+....| -.+..+|.+ |+++|++.++ +++++|+++
T Consensus 119 ~t------~r~~ii~~~~~yHG~t~~~~~~s~~~~~~~~~~p~~~~~~~~p~~-----d~~~l~~~~~---~~iAavi~E 184 (387)
T d1vefa1 119 HT------GRKKFVAAMRGFSGRTMGSLSVTWEPKYREPFLPLVEPVEFIPYN-----DVEALKRAVD---EETAAVILE 184 (387)
T ss_dssp HH------SCCEEEEETTCCCCSSHHHHHTCCCHHHHGGGCSCSSCEEEECTT-----CHHHHHHHCC---TTEEEEEEC
T ss_pred hc------ccceecccccCCCCCccceEeccCCccccCCCCCCCCCceEeCCC-----CHHHHHHhcC---CCeEEEEEE
Confidence 63 3456765 6678997755533211 245667764 8999999987 789998885
Q ss_pred cC-CCccccccC---HHHHHHHHHHcCCEEEEEccccccccCCCCCCccC--------CcEEEeCCcccccccCCCCCCc
Q 001989 738 YP-STHGVYEEG---IDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIG--------ADVCHLNLHKTFCIPHGGGGPG 805 (985)
Q Consensus 738 ~p-n~~G~i~~d---i~eI~~la~~~galliVD~a~~~~~~~l~~pg~~g--------~Di~~~s~hK~l~~p~g~GGPg 805 (985)
-- ...|++.++ +++|.++|+++|+++|+|+++ .|+.+.|.++ +|+++++ |.++ +|-|-
T Consensus 185 Pi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~----tGfgR~G~~~~~~~~~v~PDi~~~g--K~l~----gG~~~ 254 (387)
T d1vefa1 185 PVQGEGGVRPATPEFLRAAREITQEKGALLILDEIQ----TGMGRTGKRFAFEHFGIVPDILTLA--KALG----GGVPL 254 (387)
T ss_dssp SEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTT----TTTTTTSSSSTHHHHTCCCSEEEEC--GGGG----TTSSC
T ss_pred CCCCCCCCccCCHHHHHHHHHHHHHcCceEEecccc----cccCccCCCcccccCCcCCceeeec--ccCC----CCccc
Confidence 32 345666422 899999999999999999886 3455555433 6999875 8874 34454
Q ss_pred eEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHH
Q 001989 806 MGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKR 885 (985)
Q Consensus 806 ~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~ 885 (985)
.+++ .+++....+... ...+|+.|++++++++.+.|..+.++.+ .++..+..+++.++
T Consensus 255 ~~~~-~~~~~~~~~~~~------------------~~g~T~~gnPla~aaa~a~L~~l~~~~~---~~~v~~~g~~l~~~ 312 (387)
T d1vefa1 255 GVAV-MREEVARSMPKG------------------GHGTTFGGNPLAMAAGVAAIRYLERTRL---WERAAELGPWFMEK 312 (387)
T ss_dssp EEEE-EEHHHHHTSCTT------------------SSCCSSTTCHHHHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHH
T ss_pred cccc-cceeeeeccccC------------------CccccCCCCcchhhhcccchhhcccccc---cchHhhhhHHHHHH
Confidence 4444 454444333211 1123466788888888899998876544 34566778899999
Q ss_pred hhcc-CC-ee-ecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCCCCCCCEEEEeccCCCCHHHHHHHH
Q 001989 886 LEKH-YP-IL-FRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKSWTGIVM 962 (985)
Q Consensus 886 L~~g-~~-l~-~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~~p~~~~lris~t~~~t~eeId~~~ 962 (985)
|++. .+ +. +.+. + .+ +.+++. ......+.+.+.++|+.+.... ++.+|++|+..+|++|||+
T Consensus 313 L~~l~~~~v~~vrg~-G-l~--~~ie~~------~~~~~~~~~~~~~~g~l~~~~g---~~~ir~~Ppl~it~~~ld~-- 377 (387)
T d1vefa1 313 LRAIPSPKIREVRGM-G-LM--VGLELK------EKAAPYIARLEKEHRVLALQAG---PTVIRFLPPLVIEKEDLER-- 377 (387)
T ss_dssp HHTSCCTTEEEEEEE-T-TE--EEEEES------SCSHHHHHHHHHHHCEECEESS---TTEEEECCCTTCCHHHHHH--
T ss_pred HHhcCCCceEEEeec-c-eE--EEEEEe------CCchHHHHHHHHHCCCeEEecC---CCEEEEECCccCCHHHHHH--
Confidence 9762 11 21 1111 1 12 234443 2245677887888887754322 4789999999999999999
Q ss_pred ccCChhHHH
Q 001989 963 LSSPSEKKL 971 (985)
Q Consensus 963 ~~~~l~~~~ 971 (985)
+++++++++
T Consensus 378 ~~~~i~~aL 386 (387)
T d1vefa1 378 VVEAVRAVL 386 (387)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 778888775
|
| >d1s0aa_ c.67.1.4 (A:) Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA species: Escherichia coli [TaxId: 562]
Probab=99.71 E-value=2.2e-16 Score=180.20 Aligned_cols=332 Identities=13% Similarity=0.123 Sum_probs=209.8
Q ss_pred cccccccccCCCccccccccccccccccCCCCchhhhhhHHHHHHHHHHHHHHHhCCCc-cceecCcHHHHHHHHHHHHH
Q 001989 591 MIPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFDS-FSLQPNAGAAGEYAGLMVIR 669 (985)
Q Consensus 591 ~~~lG~~t~~~~~~~~~~~~~~~~f~~~~p~~p~e~~~G~~~~~~e~~~~la~l~G~~~-~~~~~~sGa~a~~a~l~air 669 (985)
...||++++.+..+...+.............+ +...++.+++.+.++.+. ..++.+||++|+++++.++|
T Consensus 54 ~~~lGh~~p~i~~Ai~~q~~~~~~~~~~~~~~---------~~~~~l~~~l~~~~~~~~~~v~f~~sGseA~e~A~k~ar 124 (429)
T d1s0aa_ 54 AAIHGYNHPQLNAAMKSQIDAMSHVMFGGITH---------APAIELCRKLVAMTPQPLECVFLADSGSVAVEVAMKMAL 124 (429)
T ss_dssp TCTTCBSCHHHHHHHHHHHHHCSCCCCSSEEC---------HHHHHHHHHHHHHSCTTCCEEEEESSHHHHHHHHHHHHH
T ss_pred HHhhcCCcHHHHHHHHHHHHhcCCcccCCccc---------hHHHHHHHHHHhhhccCcceeeeccccccchhhhhhhhh
Confidence 45688887776655444432211111111111 123356667777775443 34567899999999999999
Q ss_pred HHHHhcCCCCCCEEEE-cCCCCcccHHHHHHCC-------------cEEEEEcCCCC------CCCCHHHHHHHHHhcCC
Q 001989 670 AYHKARGDHHRNVCII-PVSAHGTNPATAAMCG-------------MKIVSVGTDAK------GNINIEELRKAAEANRD 729 (985)
Q Consensus 670 ~~~~~~g~~~~~~IIv-~~~~Hg~~~~~a~~~G-------------~~vv~v~~d~~------g~iD~e~L~~~i~~~~~ 729 (985)
.|...+|. ++.+||. ...+||....+....| ......|.... ...+++++++.+.++.+
T Consensus 125 ~~~~~~g~-~~~~ii~~~~~yHG~t~~a~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (429)
T d1s0aa_ 125 QYWQAKGE-ARQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDMVGFARLMAAHRH 203 (429)
T ss_dssp HHHHHHTC-CCCEEEEETTCCCCSSHHHHTTSCTTTTTGGGGTTTSCCCEEECCCCSBC-CCCCGGGGHHHHHHHHHHTT
T ss_pred heeecccc-cccEEEEecCCccccchhhhhhcCCccccccccCccccccccccccccccccccchhhhhhhhhhhhhcCC
Confidence 88766663 4456665 6789998765543211 12222332211 12356677777766667
Q ss_pred CEEEEEEEcC--CCcccccc---CHHHHHHHHHHcCCEEEEEccccccccCCCCCCcc--------CCcEEEeCCccccc
Q 001989 730 NLSTLMVTYP--STHGVYEE---GIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYI--------GADVCHLNLHKTFC 796 (985)
Q Consensus 730 ~t~~Vvv~~p--n~~G~i~~---di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~--------g~Di~~~s~hK~l~ 796 (985)
++++|+++-. +.-|++.+ -+++|.++|+++|+++|+|+++ .|+.+.|.+ -+|+++++ |.+
T Consensus 204 ~iaavivEPi~~~~gg~~~~~~~fl~~lr~lc~~~gillI~DEV~----tGfGRtG~~~~~~~~~v~PDi~~~g--K~l- 276 (429)
T d1s0aa_ 204 EIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIA----TGFGRTGKLFACEHAEIAPDILCLG--KAL- 276 (429)
T ss_dssp TEEEEEECSSEECTTTCEEBCTHHHHHHHHHHHHHTCEEEEECTT----TTTTTTSSSSGGGGGTCCCSEEEEC--GGG-
T ss_pred ccceeeecceeccCCCccCCCHHHHHHHHHHHHHcCcceehhhcc----ccccccccccccccceecccccccc--ccc-
Confidence 8999988642 33344332 2899999999999999999887 344444433 37998774 776
Q ss_pred ccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHHHHHHHHHHH
Q 001989 797 IPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAI 876 (985)
Q Consensus 797 ~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl~~~~~~~~ 876 (985)
++|+.-+|.+++++++.+.+..... ......+++.|++..++++.+.|..+..+++. ++..
T Consensus 277 ---~gG~~p~~av~~~~~i~~~~~~~~~-------------~~~~~~~T~~gnp~~~aaa~a~L~~i~~~~~~---~~~~ 337 (429)
T d1s0aa_ 277 ---TGGTMTLSATLTTREVAETISNGEA-------------GCFMHGPTFMGNPLACAAANASLAILESGDWQ---QQVA 337 (429)
T ss_dssp ---GTSSSCCEEEEECHHHHHHHHTSTT-------------SSCSCCCTTTTCHHHHHHHHHHHHHHHTCHHH---HHHH
T ss_pred ---ccccccccchhhHHHHHhccCCCCC-------------cceeecCCCCCCcccchhhhcccccccccccc---chhh
Confidence 3455667777778776554321100 00112235667888889999999998776554 4566
Q ss_pred HHHHHHHHHhhcc--CCee--ecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCCCCCCCEEEEeccCC
Q 001989 877 LNANYMAKRLEKH--YPIL--FRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTES 952 (985)
Q Consensus 877 ~~a~~l~~~L~~g--~~l~--~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~~p~~~~lris~t~~ 952 (985)
+..++|+++|++. ...+ +.+. + .+ +.+++.. ......+.+.|.++|+++... .+.+|++|+..
T Consensus 338 ~~g~~l~~~L~~l~~~~~v~~vrg~-G-l~--~~~e~~~-----~~~~~~~~~~~~~~Gl~~~~~----g~~i~~~Ppl~ 404 (429)
T d1s0aa_ 338 DIEVQLREQLAPARDAEMVADVRVL-G-AI--GVVETTH-----PVNMAALQKFFVEQGVWIRPF----GKLIYLMPPYI 404 (429)
T ss_dssp HHHHHHHHHHGGGGGCTTEEEEEEE-T-TE--EEEEESS-----CBCHHHHHHHHHHTTEECCCB----TTEEEECCCTT
T ss_pred HHHHHHHHHHHHhccCCceEEEeec-c-cE--EEEEecC-----cccHHHHHHHHHHCCcEEEec----CCEEEEeCCcC
Confidence 7788999988752 1111 1111 1 11 2344431 346788999999999987543 47999999999
Q ss_pred CCHHHHHHHHccCChhHHHHh
Q 001989 953 ESKSWTGIVMLSSPSEKKLHR 973 (985)
Q Consensus 953 ~t~eeId~~~~~~~l~~~~~~ 973 (985)
.|++|||+ ++++|++++++
T Consensus 405 it~~eid~--~~~~l~~al~e 423 (429)
T d1s0aa_ 405 ILPQQLQR--LTAAVNRAVQD 423 (429)
T ss_dssp CCHHHHHH--HHHHHHHHTSS
T ss_pred CCHHHHHH--HHHHHHHHHHh
Confidence 99999999 77888888764
|
| >d1z7da1 c.67.1.4 (A:7-410) Ornithine aminotransferase {Plasmodium yoelii yoelii [TaxId: 73239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Ornithine aminotransferase species: Plasmodium yoelii yoelii [TaxId: 73239]
Probab=99.70 E-value=1.3e-15 Score=172.70 Aligned_cols=321 Identities=15% Similarity=0.195 Sum_probs=196.3
Q ss_pred ccccccccCCCccccccccccccccccCCCCchhhhhhHHHHHHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHH
Q 001989 592 IPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAY 671 (985)
Q Consensus 592 ~~lG~~t~~~~~~~~~~~~~~~~f~~~~p~~p~e~~~G~~~~~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~ 671 (985)
..||++++.+..+...+..... +.+ ..+.+ ....++++.++++.+.+.+ .+.+||++++++++.++|.+
T Consensus 51 ~~lGh~~p~v~~Ai~~q~~~~~-~~~-~~~~~--------~~~~~~~~~~~~~~~~~~v-~~~~sgs~a~~~a~k~ar~~ 119 (404)
T d1z7da1 51 VNQGHCHPNILNAMINQAKNLT-ICS-RAFFS--------VPLGICERYLTNLLGYDKV-LMMNTGAEANETAYKLCRKW 119 (404)
T ss_dssp TTTCBTCHHHHHHHHHHHTTCS-CCC-TTSEE--------HHHHHHHHHHHHHHTCSEE-EEESSHHHHHHHHHHHHHHH
T ss_pred HhhhcCcHHHHHHHHHHHHhCC-Ccc-cccch--------HHHHHHHHhhhhcccccee-eeeccccchHHHHHHHHHHH
Confidence 4578887766655443332211 111 11111 2244677888888887654 45688999999998888876
Q ss_pred HHhcC--CCCCCEEEE-cCCCCcccHHHHHHCC------------cEEEEEcCCCCCCCCHHHHHHHHHhcCCCEEEEEE
Q 001989 672 HKARG--DHHRNVCII-PVSAHGTNPATAAMCG------------MKIVSVGTDAKGNINIEELRKAAEANRDNLSTLMV 736 (985)
Q Consensus 672 ~~~~g--~~~~~~IIv-~~~~Hg~~~~~a~~~G------------~~vv~v~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv 736 (985)
...+. ...+.+++. ...+||.........+ -.+..+|. -+.++++..+. .+++++|++
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~hg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~--~~~iAavi~ 192 (404)
T d1z7da1 120 GYEVKKIPENMAKIVVCKNNFSGRTLGCISASTTKKCTSNFGPFAPQFSKVPY-----DDLEALEEELK--DPNVCAFIV 192 (404)
T ss_dssp HHHTSCCCTTCCEEEEETTC--------------------------CEEEECT-----TCHHHHHHHHT--STTEEEEEE
T ss_pred HhhcccccccccccccccccCCCCcccccccccccccccCCCCCCcccccccc-----chHHHHHHHhc--CCCEEEEEE
Confidence 54322 122345555 5566765543322111 12333443 37888888775 367888888
Q ss_pred EcC-CCccccccC---HHHHHHHHHHcCCEEEEEccccccccCCCCCCcc--------CCcEEEeCCcccccccCCCCCC
Q 001989 737 TYP-STHGVYEEG---IDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYI--------GADVCHLNLHKTFCIPHGGGGP 804 (985)
Q Consensus 737 ~~p-n~~G~i~~d---i~eI~~la~~~galliVD~a~~~~~~~l~~pg~~--------g~Di~~~s~hK~l~~p~g~GGP 804 (985)
+-- ...|.+.+| +++|.++|+++|+++|+|+++. |+.+.|.+ -+|+++++ |.++ +|+.
T Consensus 193 EPi~g~~G~~~~~~~fl~~l~~lc~~~g~llI~DEV~t----GfgRtG~~~~~e~~gv~PDivt~g--K~l~----gG~~ 262 (404)
T d1z7da1 193 EPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQT----GLGRTGKLLCVHHYNVKPDVILLG--KALS----GGHY 262 (404)
T ss_dssp CSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTT----TTTTTSSSSGGGGGTCCCSEEEEC--GGGG----TTSS
T ss_pred EEEcCCCCCccCCHHHHHHHHHHHHHcCCEEEEEcCcc----CCCcccccccccccCCCCCEEEEc--cccc----CCCC
Confidence 542 345766533 8999999999999999999873 34444433 27999774 7774 4545
Q ss_pred ceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHH
Q 001989 805 GMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAK 884 (985)
Q Consensus 805 g~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~ 884 (985)
-+|.+++++++.+.+.... ..+++.|+++.++++.+.|..+..+.+.+ +..++..++.+
T Consensus 263 p~~~v~~~~~i~~~~~~~~------------------~~~T~~gnpl~~aaa~a~L~~~~~~~~~~---~~~~~~~~~~~ 321 (404)
T d1z7da1 263 PISAVLANDDIMLVIKPGE------------------HGSTYGGNPLAASICVEALNVLINEKLCE---NAEKLGGPFLE 321 (404)
T ss_dssp CCEEEEECHHHHTTCCTTC------------------CCCTTTTCHHHHHHHHHHHHHHHHTTHHH---HHHHHHHHHHH
T ss_pred CcccccchHHHHccCCCCC------------------cCcCCCCCcchhhhhhhhhhhhhcchhhh---hhccchhHHHH
Confidence 6777888888876654321 11345567888888888888877765544 33444555555
Q ss_pred Hhhc---cCCee--ecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCCCCCCCEEEEeccCCCCHHHHH
Q 001989 885 RLEK---HYPIL--FRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKSWTG 959 (985)
Q Consensus 885 ~L~~---g~~l~--~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~~p~~~~lris~t~~~t~eeId 959 (985)
+|.+ ..+++ +.+. + .+ +.+.+.. ......++.++|.++|+++.... .+.||++|+..+|++|||
T Consensus 322 ~l~~~~~~~~~v~~vrg~-G-l~--~~i~~~~----~~~~~~~~~~~l~~~Gl~~~~~~---~~~ir~~Ppl~it~~~id 390 (404)
T d1z7da1 322 NLKRELKDSKIVRDVRGK-G-LL--CAIEFKN----ELVNVLDICLKLKENGLITRDVH---DKTIRLTPPLCITKEQLD 390 (404)
T ss_dssp HHHHHHTTCTTEEEEEEE-T-TE--EEEEECT----TTCCHHHHHHHHHHTTEECCEET---TTEEEECCCTTCCHHHHH
T ss_pred HHHHHHhcCCCeEEEEee-C-cE--EEEEEcC----CcccHHHHHHHHHhCCeEEecCC---CCEEEEECCcCCCHHHHH
Confidence 5543 12221 1111 1 12 2334331 13456789999999999975443 378999999999999999
Q ss_pred HHHccCChhHHHHhh
Q 001989 960 IVMLSSPSEKKLHRL 974 (985)
Q Consensus 960 ~~~~~~~l~~~~~~~ 974 (985)
+ ++++|+++++.+
T Consensus 391 ~--~~~~l~~alk~~ 403 (404)
T d1z7da1 391 E--CTEIIVKTVKFF 403 (404)
T ss_dssp H--HHHHHHHHHHHH
T ss_pred H--HHHHHHHHHHhh
Confidence 9 889999988765
|
| >d2gsaa_ c.67.1.4 (A:) Glutamate-1-semialdehyde aminomutase (aminotransferase) {Synechococcus sp., strain GR6 [TaxId: 1131]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Glutamate-1-semialdehyde aminomutase (aminotransferase) species: Synechococcus sp., strain GR6 [TaxId: 1131]
Probab=99.69 E-value=1.8e-16 Score=181.09 Aligned_cols=322 Identities=13% Similarity=0.101 Sum_probs=196.2
Q ss_pred cccccccccCCCccccccccccccccccCCCCchhhhhhHHHHHHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHH
Q 001989 591 MIPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRA 670 (985)
Q Consensus 591 ~~~lG~~t~~~~~~~~~~~~~~~~f~~~~p~~p~e~~~G~~~~~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~ 670 (985)
...||++++.+..+...+... .+++.... ....++.+.++++.+.....++.+||++|++++++.+|.
T Consensus 63 ~~~lGh~hp~i~~ai~~~~~~----~~~~~~~~--------~~~~~la~~~~~~~~~~~~v~f~~sGseA~e~Alk~ar~ 130 (427)
T d2gsaa_ 63 PAICGHAHPEVIEALKVAMEK----GTSFGAPC--------ALENVLAEMVNDAVPSIEMVRFVNSGTEACMAVLRLMRA 130 (427)
T ss_dssp TTTTCBTCHHHHHHHHHHHTT----CSCCSSCC--------HHHHHHHHHHHHHSTTCSEEEEESSHHHHHHHHHHHHHH
T ss_pred HHhccCCcHHHHHHHHHHHHh----cCccccch--------hHHHHHHHHHHhhCCccccccccCCcHHHHHHHHHHHHH
Confidence 456888877766554433311 11111111 123356677788775444457789999999999999887
Q ss_pred HHHhcCCCCCCEEEE-cCCCCcccHHHH-------HHCC------------cEEEEEcCCCCCCCCHHHHHHHHHhcCCC
Q 001989 671 YHKARGDHHRNVCII-PVSAHGTNPATA-------AMCG------------MKIVSVGTDAKGNINIEELRKAAEANRDN 730 (985)
Q Consensus 671 ~~~~~g~~~~~~IIv-~~~~Hg~~~~~a-------~~~G------------~~vv~v~~d~~g~iD~e~L~~~i~~~~~~ 730 (985)
|. .+.+||. ..++||....+. ...+ .+...++. .|+++|++.++++.++
T Consensus 131 ~t------~r~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~-----~~~~~le~~~~~~~~~ 199 (427)
T d2gsaa_ 131 YT------GRDKIIKFEGCYHGHADMFLVKAGSGVATLGLPSSPGVPKKTTANTLTTPY-----NDLEAVKALFAENPGE 199 (427)
T ss_dssp HH------CCCEEEEETTCCCCSCGGGCSSCCHHHHHTTCCSCSSSCHHHHTTEEEECT-----TCHHHHHHHHTTSTTT
T ss_pred hc------CCCeEEEEecccccCcceeeeecCCcccccCCCCCCCCcccCccceeccCc-----chHHHHHHHHHhCCCC
Confidence 63 4567775 678999653321 1111 12333443 4899999999877778
Q ss_pred EEEEEEEcC-CCccccccC---HHHHHHHHHHcCCEEEEEccccccccCCCCCCcc--------CCcEEEeCCccccccc
Q 001989 731 LSTLMVTYP-STHGVYEEG---IDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYI--------GADVCHLNLHKTFCIP 798 (985)
Q Consensus 731 t~~Vvv~~p-n~~G~i~~d---i~eI~~la~~~galliVD~a~~~~~~~l~~pg~~--------g~Di~~~s~hK~l~~p 798 (985)
+++|+++-- ...|++.+| +++|.++|+++|+++|+|+++. |+ +.+.+ .+|+++++ |.++
T Consensus 200 iaavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~~~llI~DEv~t----G~-r~g~~~~~~~~gi~PDi~~~g--K~lg-- 270 (427)
T d2gsaa_ 200 IAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVMT----GF-RIAYGGVQEKFGVTPDLTTLG--KIIG-- 270 (427)
T ss_dssp EEEEEECSSBCSSSCBCCCTTHHHHHHHHHHHTTCEEEEECTTT----BT-TTBTTCHHHHTTCCCSEEEEC--GGGG--
T ss_pred eEEEEEcCCcCCCCCccCCHHHHHHHHHHHHHhceeeeeccccc----cc-eecccchHHhcCCCHHHHhhh--hccC--
Confidence 999988642 345777622 9999999999999999999873 23 23322 37999875 7774
Q ss_pred CCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHHHHHHHHHHHHH
Q 001989 799 HGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILN 878 (985)
Q Consensus 799 ~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~ 878 (985)
+|-|..+ +++++++.+.+...- .....+|+.|+++.++++.+.|..+.++++. ++..++
T Consensus 271 --gG~p~~a-~~~~~~i~~~~~~~~---------------~~~~~~T~~gnpla~AAala~Le~i~~~~l~---~~~~~~ 329 (427)
T d2gsaa_ 271 --GGLPVGA-YGGKREIMQLVAPAG---------------PMYQAGTLSGNPLAMTAGIKTLELLRQPGTY---EYLDQI 329 (427)
T ss_dssp --TTSCCEE-EEECHHHHTTBTTTS---------------SBCCCCTTTTCHHHHHHHHHHHHHHTSTTHH---HHHHHH
T ss_pred --CCcceee-eeehHHHHHHhcccC---------------CCcCCCCCCCCchhhHHHHHhhHHhhhhhHH---hhhhHH
Confidence 4556544 556777665442210 0112235667888889899999998776554 456677
Q ss_pred HHHHHHHhhc---cCCe--eecCCCCceeeEEEEEecCcc---ccCCCC---HHHHHHHHHHCCCccCCCCCCCCCEEEE
Q 001989 879 ANYMAKRLEK---HYPI--LFRGVNGTVAHEFIVDLRGLK---NTAGIE---PEDVAKRLMDYGFHGPTMSWPVPGTLMI 947 (985)
Q Consensus 879 a~~l~~~L~~---g~~l--~~~~~~~~~~~~~iv~~~~~~---~~~g~~---~~~v~~~L~~~Gi~~~~~~~p~~~~lri 947 (985)
.++|.++|++ .+++ ...+. +..+ .+.+...... .....+ ...+.+.|.++|+++.+..+ .. +
T Consensus 330 g~~l~~~L~~l~~~~~~~~~v~~~-ggm~-~i~~~~~~v~~~~~~~~~d~~~~~~~~~~ll~~Gv~l~p~~~---~~--~ 402 (427)
T d2gsaa_ 330 TKRLSDGLLAIAQETGHAACGGQV-SGMF-GFFFTEGPVHNYEDAKKSDLQKFSRFHRGMLEQGIYLAPSQF---EA--G 402 (427)
T ss_dssp HHHHHHHHHHHHHHTTCCCEEEEE-TTEE-EEESSSCCCCSHHHHTTSCHHHHHHHHHHHHHTTEECCSSTT---SC--E
T ss_pred HHHHHHHHHHHHhhcCCCcEEccc-CCeE-EEEEeccCCCCHHHhhcccHHHHHHHHHHHHHCCEEECCCCC---cc--e
Confidence 7888887764 1221 11110 1111 1111110000 000011 13566778899998754221 11 2
Q ss_pred eccCCCCHHHHHHHHccCChhHHHHhh
Q 001989 948 EPTESESKSWTGIVMLSSPSEKKLHRL 974 (985)
Q Consensus 948 s~t~~~t~eeId~~~~~~~l~~~~~~~ 974 (985)
.++..+|++|||+ +++++++++++|
T Consensus 403 ~~~l~~Te~dId~--~l~al~~al~~L 427 (427)
T d2gsaa_ 403 FTSLAHTEEDIDA--TLAAARTVMSAL 427 (427)
T ss_dssp ECCTTCCHHHHHH--HHHHHHHHHTCC
T ss_pred eCCCCCCHHHHHH--HHHHHHHHHHhC
Confidence 3678899999999 889999988754
|
| >d1d2fa_ c.67.1.3 (A:) Modulator in mal gene expression, MalY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Modulator in mal gene expression, MalY species: Escherichia coli [TaxId: 562]
Probab=99.69 E-value=1.2e-15 Score=170.34 Aligned_cols=299 Identities=12% Similarity=0.074 Sum_probs=183.5
Q ss_pred HHHHHHHHHHHHHhCCCc--cceec-CcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEc
Q 001989 632 EMFNNLGEWLCTITGFDS--FSLQP-NAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVG 708 (985)
Q Consensus 632 ~~~~e~~~~la~l~G~~~--~~~~~-~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~ 708 (985)
+..+.+.+++++.+|.+. .++.. ++++++...++ +.+ ..++|+|+++++.|+.+....+..|.+++.++
T Consensus 39 ~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~~l~~~~---~~l-----~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~ 110 (361)
T d1d2fa_ 39 EFLAAIAHWFSTQHYTAIDSQTVVYGPSVIYMVSELI---RQW-----SETGEGVVIHTPAYDAFYKAIEGNQRTVMPVA 110 (361)
T ss_dssp HHHHHHHHHHHHHSCCCCCGGGEEEESCHHHHHHHHH---HHS-----SCTTCEEEEEESCCHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHHHHHHhCCCCCcceEEEeCCHHHHHHHHh---hhc-----cccccccccccccccchhHHHHhhcceEEeec
Confidence 456667777877778653 45544 44455543322 222 14789999999888777777888999999888
Q ss_pred CCC---CCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccc--cCHHHHHHHHHHcCCEEEEEccccccc-cCC-CCC-
Q 001989 709 TDA---KGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYE--EGIDEICKIIHDNGGQVYMDGANMNAQ-VGL-TSP- 779 (985)
Q Consensus 709 ~d~---~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~--~di~eI~~la~~~galliVD~a~~~~~-~~l-~~p- 779 (985)
.+. ++.+|++.+++.+. ++++++|++++| |++|.+. .++++|+++|+++|+++++|+++..-. .+. ..+
T Consensus 111 ~~~~~~~~~~d~~~~~~~~~--~~~~~~i~l~~p~NPTG~~~s~~~~~~i~~~~~~~~~~lI~De~y~~~~~~~~~~~~~ 188 (361)
T d1d2fa_ 111 LEKQADGWFCDMGKLEAVLA--KPECKIMLLCSPQNPTGKVWTCDELEIMADLCERHGVRVISDEIHMDMVWGEQPHIPW 188 (361)
T ss_dssp CEECSSSEECCHHHHHHHHT--STTEEEEEEESSCTTTCCCCCTTHHHHHHHHHHHTTCEEEEECTTTTCBCSSSCCCCG
T ss_pred ccccccccccccccchhhcc--cCCceeEEecccccccccccchhhhhhhhhhhhhhheeeeeccccccccccccccccc
Confidence 743 24689999999986 268999999999 5799775 258899999999999999999874211 111 011
Q ss_pred C--ccCCcEEEeCCcccccccCCCCCCceEEEEEccccc-----CcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHH
Q 001989 780 G--YIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLA-----PFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALI 852 (985)
Q Consensus 780 g--~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~-----~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~ 852 (985)
. ...-.++..++.|.++. .|.++|++++..... ..+.... ..++. + +..
T Consensus 189 ~~~~~~~~v~~~s~SK~~~~----~g~R~g~~~~~~~~~~~~~~~~~~~~~--------------~~~~~-~----~~~- 244 (361)
T d1d2fa_ 189 SNVARGDWALLTSGSKSFNI----PALTGAYGIIENSSSRDAYLSALKGRD--------------GLSSP-S----VLA- 244 (361)
T ss_dssp GGTCCSSEEEEECSHHHHTC----GGGCCEEEEECSHHHHHHHHHHHHTTS--------------CCCSC-C----HHH-
T ss_pred cccccccccccccccccccc----ccccceeeecchhHHHHHHhhhccccc--------------ccccc-h----hhh-
Confidence 1 11223667777888755 477899887763211 1111100 00111 1 111
Q ss_pred HHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHC-
Q 001989 853 LPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDY- 930 (985)
Q Consensus 853 ~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~- 930 (985)
..+++..+ ....+-.++......++.+++.+.+.+ ..++.+..+.+.++ +.++++. .+.+..+++++|.++
T Consensus 245 ~~a~~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~gg~~--~~~~l~~----~~~~~~~~~~~Ll~~~ 317 (361)
T d1d2fa_ 245 LTAHIAAY-QQGAPWLDALRIYLKDNLTYIADKMNAAFPELNWQIPQSTYL--AWLDLRP----LNIDDNALQKALIEQE 317 (361)
T ss_dssp HHHHHHHH-HHCHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCCCCCSBCSE--EEEECGG----GCCCHHHHHHHHHHTT
T ss_pred HHHHHHHh-hccchhhhcccccchhhHHHHHHHhhhhcccccccccCceeE--EEEEccC----CCCCHHHHHHHHHHhC
Confidence 11122222 223333444444455666677776654 22332222333332 2356542 357889999998665
Q ss_pred CCccCC-CCC--CCCCEEEEeccCCCCHHHHHHHHccCChhHHHHhhc
Q 001989 931 GFHGPT-MSW--PVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRLK 975 (985)
Q Consensus 931 Gi~~~~-~~~--p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~~ 975 (985)
||.+.. ..| +..+++|||+. .+.|++++ .++.|+++++++|
T Consensus 318 gv~v~pG~~F~~~~~~~vRis~~--~~~e~l~~--al~rl~~~l~~lr 361 (361)
T d1d2fa_ 318 KVAIMPGYTYGEEGRGFVRLNAG--CPRSKLEK--GVAGLINAIRAVR 361 (361)
T ss_dssp CEECEEGGGGCGGGTTEEEEECC--SCHHHHHH--HHHHHHHHHHHHC
T ss_pred CEEEEeccccCCCCCCEEEEEEc--CCHHHHHH--HHHHHHHHHHhcC
Confidence 998642 222 23478999985 57889998 7888898888775
|
| >d1c7na_ c.67.1.3 (A:) Cystalysin {Treponema denticola [TaxId: 158]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystalysin species: Treponema denticola [TaxId: 158]
Probab=99.68 E-value=8e-16 Score=174.10 Aligned_cols=336 Identities=15% Similarity=0.125 Sum_probs=202.5
Q ss_pred ccccccccccCCCccccccccc----cccccccCCCCchhhhhhHHHHHHHHHHHHHHHhCCCc--cceec-CcHHHHHH
Q 001989 590 SMIPLGSCTMKLNATTEMMPVT----WPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFDS--FSLQP-NAGAAGEY 662 (985)
Q Consensus 590 ~~~~lG~~t~~~~~~~~~~~~~----~~~f~~~~p~~p~e~~~G~~~~~~e~~~~la~l~G~~~--~~~~~-~sGa~a~~ 662 (985)
.++.||.+.|.+++..+...+. ......|.+ |..++.+.+.+++++.+|.+. .++.. ++++++..
T Consensus 32 ~vi~l~~g~pdf~~p~~v~~al~~~~~~~~~~Y~~--------g~~~Lr~aia~~~~~~~g~~~~~~~I~vt~G~~~al~ 103 (394)
T d1c7na_ 32 EVVPLSVADMEFKNPPELIEGLKKYLDETVLGYTG--------PTEEYKKTVKKWMKDRHQWDIQTDWIINTAGVVPAVF 103 (394)
T ss_dssp TCCCCCSSSCSSCCCHHHHHHHHHHHHHCCCSSBC--------CCHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHH
T ss_pred CeEEccCCCCCCCCCHHHHHHHHHHHhCCCcCCCC--------CCHHHHHHHHHHHHHhcCCCCCCcceEeeccchhhhh
Confidence 4788998888877654332211 111122321 223455666777777777753 45544 44444553
Q ss_pred HHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcCCC---CCCCCHHHHHHHHHhcCCCEEEEEEEcC
Q 001989 663 AGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDA---KGNINIEELRKAAEANRDNLSTLMVTYP 739 (985)
Q Consensus 663 a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~d~---~g~iD~e~L~~~i~~~~~~t~~Vvv~~p 739 (985)
. +++.+ .+++++|+++.+.+..+.......|.+.+.++.+. .+.+|.+.++.++. .++++++++++|
T Consensus 104 ~---~~~~~-----~~pgd~vi~~~p~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~d~~~~~~~~~--~~~~~~i~l~~P 173 (394)
T d1c7na_ 104 N---AVREF-----TKPGDGVIIITPVYYPFFMAIKNQERKIIECELLEKDGYYTIDFQKLEKLSK--DKNNKALLFCSP 173 (394)
T ss_dssp H---HHHHH-----CCTTCEEEECSSCCTHHHHHHHTTTCEEEECCCEEETTEEECCHHHHHHHHT--CTTEEEEEEESS
T ss_pred h---hhccc-----cccccccccccCcccchhhHHhhhhhcccccccccccccccchhhhhhhhhc--cccceEEEeccc
Confidence 3 33333 25789999988766666666778899888877632 24689999988875 267999999999
Q ss_pred -CCccccc--cCHHHHHHHHHHcCCEEEEEccccccc-cCCC-CC------CccCCcEEEeCCcccccccCCCCCCceEE
Q 001989 740 -STHGVYE--EGIDEICKIIHDNGGQVYMDGANMNAQ-VGLT-SP------GYIGADVCHLNLHKTFCIPHGGGGPGMGP 808 (985)
Q Consensus 740 -n~~G~i~--~di~eI~~la~~~galliVD~a~~~~~-~~l~-~p------g~~g~Di~~~s~hK~l~~p~g~GGPg~G~ 808 (985)
|++|.+. ..+++|+++|+++++++++|.++..-. .+.. .+ .....-+++.|+.|+|++| |.++|+
T Consensus 174 ~NPTG~v~s~~~l~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~----G~R~g~ 249 (394)
T d1c7na_ 174 HNPVGRVWKKDELQKIKDIVLKSDLMLWSDEIHFDLIMPGYEHTVFQSIDEQLADKTITFTAPSKTFNIA----GMGMSN 249 (394)
T ss_dssp BTTTTBCCCHHHHHHHHHHHHHSSCEEEEECTTTTCBCTTCCCCCGGGSCHHHHTTEEEEECSHHHHTCG----GGCCEE
T ss_pred ccccceeccHHHhhhhhccccccceeEeccccccccccCCccccchhhhhcccccceeeccccccccccc----cccccc
Confidence 5799995 257889999999999999999873111 1100 00 1112346778889998654 788888
Q ss_pred EEEccc-ccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhh
Q 001989 809 IGVKKH-LAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLE 887 (985)
Q Consensus 809 i~~~~~-l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~ 887 (985)
+++.+. +.+.+. .... .....+.. . ....++ ........+.+.+..+...++.+.+.+.|+
T Consensus 250 ~~~~~~~i~~~~~-~~~~------------~~~~~~~~---~-~~~~a~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 311 (394)
T d1c7na_ 250 IIIKNPDIRERFT-KSRD------------ATSGMPFT---T-LGYKAC-EICYKECGKWLDGCIKVIDKNQRIVKDFFE 311 (394)
T ss_dssp EECCCHHHHHHHH-HHHH------------HTTCCCCC---H-HHHHHH-HHHHHHCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccChhhhhhhh-hhhh------------hccccccc---c-ccchhh-hhhhcchhhhhcccccccchhhhhhhhhhh
Confidence 887753 322211 0000 00011111 1 111111 222223344455555555566666777666
Q ss_pred c-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHC-CCccCC-CCC--CCCCEEEEeccCCCCHHHHHHHH
Q 001989 888 K-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDY-GFHGPT-MSW--PVPGTLMIEPTESESKSWTGIVM 962 (985)
Q Consensus 888 ~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~-Gi~~~~-~~~--p~~~~lris~t~~~t~eeId~~~ 962 (985)
. +.++....+.+.++ +.++++. .+.+..++++.|.++ ||.+.. ..| +.++++||++. .++|+|++
T Consensus 312 ~~~~~~~~~~p~g~~~--~~~~~~~----~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~~~~~iRis~~--~~~e~i~e-- 381 (394)
T d1c7na_ 312 VNHPEIKAPLIEGTYL--QWIDFRA----LKMDHKAMEEFMIHKAQIFFDEGYIFGDGGIGFERINLA--APSSVIQE-- 381 (394)
T ss_dssp HHCTTSBCCCCSBSSE--EEEECGG----GCCCHHHHHHHHHHTTCCCCEEGGGGCGGGTTEEEEECC--SCHHHHHH--
T ss_pred ccccceeecCCCceeE--EEEECCC----CCCCHHHHHHHHHHhCCEEEEcchhhCCCCCCEEEEEEe--CCHHHHHH--
Confidence 5 44443333334443 3466652 256889999998765 987642 223 23589999985 47888999
Q ss_pred ccCChhHHHHhhc
Q 001989 963 LSSPSEKKLHRLK 975 (985)
Q Consensus 963 ~~~~l~~~~~~~~ 975 (985)
.++.|++++++||
T Consensus 382 al~rl~~~l~~Lk 394 (394)
T d1c7na_ 382 SLERLNKALKDLK 394 (394)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcC
Confidence 7888999998876
|
| >d1bw0a_ c.67.1.1 (A:) Tyrosine aminotransferase (TAT) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Tyrosine aminotransferase (TAT) species: Trypanosoma cruzi [TaxId: 5693]
Probab=99.68 E-value=9.2e-16 Score=174.55 Aligned_cols=315 Identities=12% Similarity=0.074 Sum_probs=193.5
Q ss_pred hhhHHHHHHHHHHHHHHHhC--------CCccceecCcHH-HHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHH
Q 001989 627 AQGYQEMFNNLGEWLCTITG--------FDSFSLQPNAGA-AGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATA 697 (985)
Q Consensus 627 ~~G~~~~~~e~~~~la~l~G--------~~~~~~~~~sGa-~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a 697 (985)
.+|..++.+.+.+++.+.++ .+..++..++|+ +|...+ ++.+ ..+||+|+++++.+..+...+
T Consensus 71 ~~G~~~LReaia~~~~~~~~~~~~~~~~~~~~~I~it~G~~~al~~~---~~~l-----~~~Gd~Vlv~~P~y~~~~~~~ 142 (412)
T d1bw0a_ 71 TVGSPEAREAVATWWRNSFVHKEELKSTIVKDNVVLCSGGSHGILMA---ITAI-----CDAGDYALVPQPGFPHYETVC 142 (412)
T ss_dssp TTCCHHHHHHHHHHHHHHHCCSTTTGGGCCGGGEEEESHHHHHHHHH---HHHH-----CCTTCEEEEEESCCTHHHHHH
T ss_pred CcCCHHHHHHHHHHHHHhcCcccccCCCCCCCeEEEecccccchhhh---hhhh-----hccccceeeeeccchhhhhhh
Confidence 46777777777777777654 233455555554 444333 3332 147899999998888888888
Q ss_pred HHCCcEEEEEcCCC--CCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccc--cCHHHHHHHHHHcCCEEEEEccccc-
Q 001989 698 AMCGMKIVSVGTDA--KGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYE--EGIDEICKIIHDNGGQVYMDGANMN- 771 (985)
Q Consensus 698 ~~~G~~vv~v~~d~--~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~--~di~eI~~la~~~galliVD~a~~~- 771 (985)
+..|++++.+|+++ ++..|++++++.+. ++++++++++| |++|.+. .++++|+++|+++++++++|+++..
T Consensus 143 ~~~G~~~~~v~~~~~~~~~~~~~~l~~~~~---~~~~~~~l~np~NPtG~~~~~~~~~~i~~~~~~~~~~vi~De~Y~~~ 219 (412)
T d1bw0a_ 143 KAYGIGMHFYNCRPENDWEADLDEIRRLKD---DKTKLLIVTNPSNPCGSNFSRKHVEDIVRLAEELRLPLFSDEIYAGM 219 (412)
T ss_dssp HHTTCEEEEEEEEGGGTTEECHHHHHHHCC---TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTC
T ss_pred hccCccccccccccccccchhhHHHHhhhh---ccccccccccccccccccchhhhccccccccccCCeeeechhhHHHh
Confidence 99999999999865 35789999998886 88999999999 5789885 3688999999999999999998731
Q ss_pred cccCCC------CCCcc---CCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCC
Q 001989 772 AQVGLT------SPGYI---GADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTI 842 (985)
Q Consensus 772 ~~~~l~------~pg~~---g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i 842 (985)
...+.. ..... ..-++..++.|.|++| |+++|++++.+....... .+... . ......
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~SK~~~~~----G~RvG~~~~~~~~~~~~~-~~~~~--------~-~~~~~~ 285 (412)
T d1bw0a_ 220 VFKGKDPNATFTSVADFETTVPRVILGGTAKNLVVP----GWRLGWLLYVDPHGNGPS-FLEGL--------K-RVGMLV 285 (412)
T ss_dssp BCCSSCTTCCCCCTTSSCCSCCEEEEEESTTTTSCG----GGCCEEEEEECTTCSCHH-HHHHH--------H-HHHHHH
T ss_pred ccCCCCCccccccccccccccccccccccCccCccC----CCCcccccccchhhcchh-hhhhh--------c-cccccc
Confidence 111110 01111 1124556777888654 789999998764432110 00000 0 000000
Q ss_pred CCcchhhhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhccCCeeecCCCCceeeEEEEEecCccccCCCCHHH
Q 001989 843 AAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPED 922 (985)
Q Consensus 843 ~s~~~g~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~ 922 (985)
++. .....+.+.+.+.....+-+.+..++..++++++.+.|.+..++.+..+.+.++ +.++++........+..+
T Consensus 286 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~~~g~~~~~p~gg~~--l~~~~~~~~~~~~~~~~~ 360 (412)
T d1bw0a_ 286 CGP---CTVVQAALGEALLNTPQEHLDQIVAKIEESAMYLYNHIGECIGLAPTMPRGAMY--LMSRIDLEKYRDIKTDVE 360 (412)
T ss_dssp TCS---CHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHHHTTSTTEEECCCCBTTE--EEEEECGGGBSSCCSHHH
T ss_pred cCC---chhhhhhcccccccccccccccccchhHHHHHHHHHHHHHhcCceecCCCCceE--EEEeCChhhcCCCCCHHH
Confidence 000 011111122222222344556666677888899999997644554433334333 223433111111246778
Q ss_pred HHHHHHH-CCCccC-CCCCCCCCEEEEeccCCCCHHHHHHHHccCChhHHHHhhc
Q 001989 923 VAKRLMD-YGFHGP-TMSWPVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRLK 975 (985)
Q Consensus 923 v~~~L~~-~Gi~~~-~~~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~~ 975 (985)
++++|.+ .|+.+. ...|..++++||++. .+.+++++ .++.|++.+++..
T Consensus 361 ~~~~ll~~~gV~v~PG~~Fg~~g~iRis~~--~~~e~l~e--al~Rl~~~l~~~~ 411 (412)
T d1bw0a_ 361 FFEKLLEEENVQVLPGTIFHAPGFTRLTTT--RPVEVYRE--AVERIKAFCQRHA 411 (412)
T ss_dssp HHHHHHHHHCEECEEGGGGTCTTEEEEECC--SCHHHHHH--HHHHHHHHHHHHB
T ss_pred HHHHHHHhCCEEEEeccccCCCCeEEEEEc--CCHHHHHH--HHHHHHHHHHhcC
Confidence 8888866 598864 233444689999985 57888888 7777888877654
|
| >d1mdoa_ c.67.1.4 (A:) Aminotransferase ArnB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Aminotransferase ArnB species: Salmonella typhimurium [TaxId: 90371]
Probab=99.68 E-value=1e-15 Score=171.72 Aligned_cols=305 Identities=15% Similarity=0.079 Sum_probs=189.2
Q ss_pred HHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcCCCC-
Q 001989 634 FNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAK- 712 (985)
Q Consensus 634 ~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~d~~- 712 (985)
..++++.+++++|.+.+ +.++||+.|...++.++ +..++|+||+|...|.+...+....|.+++.++++++
T Consensus 33 v~~~E~~la~~~g~~~a-i~~~sgt~Al~~al~al-------~~~~gdeVi~~~~~~~~~~~ai~~~g~~pv~~d~~~~~ 104 (376)
T d1mdoa_ 33 NQELEAAFCRLTGNQYA-VAVSSATAGMHIALMAL-------GIGEGDEVITPSMTWVSTLNMIVLLGANPVMVDVDRDT 104 (376)
T ss_dssp HHHHHHHHHHHHCCSEE-EEESCHHHHHHHHHHHT-------TCCTTCEEEEESSSCHHHHHHHHHTTCEEEEECBCTTT
T ss_pred HHHHHHHHHHHHCcCeE-EEeCCHHHHHHHHHHHh-------CCCCCCEEEEecccccccccchhccccceeeecccccc
Confidence 45789999999999765 56678888876665543 2357899999998787777778899999999999875
Q ss_pred CCCCHHHHHHHHHhcCCCEEEEEEEcCCCccccccCHHHHHHHHHHcCCEEEEEccccccccCC-CCCCccCCcEEEeCC
Q 001989 713 GNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGL-TSPGYIGADVCHLNL 791 (985)
Q Consensus 713 g~iD~e~L~~~i~~~~~~t~~Vvv~~pn~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l-~~pg~~g~Di~~~s~ 791 (985)
+.+|+++|+++++ ++|++|++++ .+|... |+++|.++|+++|++|+.|+||+.+.--. ...+.+|..+.++..
T Consensus 105 ~~~d~~~l~~~i~---~~tkaIi~~h--~~G~~~-~~~~i~~i~~~~~i~vIeD~a~a~g~~~~~~~~g~~g~~~~Sf~~ 178 (376)
T d1mdoa_ 105 LMVTPEHIEAAIT---PQTKAIIPVH--YAGAPA-DLDAIYALGERYGIPVIEDAAHATGTSYKGRHIGARGTAIFSFHA 178 (376)
T ss_dssp CCBCHHHHHHHCC---TTEEEECCBC--GGGCCC-CHHHHHHHHHHHTCCBCEECTTCTTCEETTEETTSSSEEEEECCT
T ss_pred cCCCHHHHHHhcC---CCCeEEEEeC--CCCCcc-chhHHHHHHHhcCceEEeccchhccCeeCCeecccccCccccCCC
Confidence 8899999999998 8999999875 678877 89999999999999999999996432111 123555655555666
Q ss_pred cccccccCCCCCCceEEEEEcc-cccCcCCC-CccccCCCC-------C--CCCCCCCCCCCCCcchhhhHHHHHHHHHH
Q 001989 792 HKTFCIPHGGGGPGMGPIGVKK-HLAPFLPS-HPVVSTGGI-------P--APEKSQPLGTIAAAPWGSALILPISYTYI 860 (985)
Q Consensus 792 hK~l~~p~g~GGPg~G~i~~~~-~l~~~lp~-~~~g~~~~~-------~--~~~~~~~~~~i~s~~~g~~~~~~~a~a~l 860 (985)
+|.++. +.+|++++++ ++...+.. +..|..... . .+.......+... ....++....-
T Consensus 179 ~K~l~~------g~GG~i~t~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~n~~~----~~~~Aai~~~q- 247 (376)
T d1mdoa_ 179 IKNITC------AEGGIVVTDNPQFADKLRSLKFHGLGVDAWDRQSGGRAPQAEVLAPGYKYNL----PDLNAAIALAQ- 247 (376)
T ss_dssp TSSSCS------SSCEEEEESCHHHHHHHHHHTBTTEECC-----------CCEESSCCCBCCC----CHHHHHHHHHH-
T ss_pred cCCCCC------CCCCEEEEechhHHHHHHhhcccCCcccccccccccccccccchhccccccc----chhhhhhhhhh-
Confidence 788742 2346777764 33322110 011111000 0 0000000111111 11111111122
Q ss_pred HHhcHHHHHHHHHHHHHHHHHHHHHhhccCCeeecCCC-C--ceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCC
Q 001989 861 AMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVN-G--TVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTM 937 (985)
Q Consensus 861 ~~lg~eGl~~~~~~~~~~a~~l~~~L~~g~~l~~~~~~-~--~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~ 937 (985)
-+.+.+..++..++++++.+.|++...+...... . ...+.+++.+.. ...+.+.+++.+.|.++||.++..
T Consensus 248 ----L~~~~~~~~~r~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~Rd~l~~~L~~~gI~~~~~ 321 (376)
T d1mdoa_ 248 ----LQKLDALNARRAAIAAQYHQAMADLPFQPLSLPSWEHIHAWHLFIIRVDE--ARCGITRDALMASLKTKGIGTGLH 321 (376)
T ss_dssp ----HHTHHHHHHHHHHHHHHHHHHHHTSSCEECCCCSSCEECCCSCEEEECCH--HHHSSCHHHHHHHHHHTTBCCBCC
T ss_pred ----hhhhhHHHHHHhhhhhhhhhhccccccccccccccccccccccccccccc--ccchhhHHHHHHHHHHCCCCeeeE
Confidence 2345556667778889999999762222111110 1 111223333220 001234568999999999976421
Q ss_pred CC-----------------C-----CCCEEEEeccCCCCHHHHHHHHccCChhHHH
Q 001989 938 SW-----------------P-----VPGTLMIEPTESESKSWTGIVMLSSPSEKKL 971 (985)
Q Consensus 938 ~~-----------------p-----~~~~lris~t~~~t~eeId~~~~~~~l~~~~ 971 (985)
.. | ....+.+-.+...|++||++ .+++|++++
T Consensus 322 y~~~~~~~~~~~~~~~~~~p~a~~~~~~~i~LP~~~~lt~~ei~~--I~~~i~~i~ 375 (376)
T d1mdoa_ 322 FRAAHTQKYYRERFPTLTLPDTEWNSERICSLPLFPDMTESDFDR--VITALHQIA 375 (376)
T ss_dssp CCCGGGSHHHHHHSTTCCCHHHHHHHTTEEEECCCTTCCHHHHHH--HHHHHHHHH
T ss_pred CcchhcCHHHHhhCCCCCCHHHHHHHhCEEEccCCCCCCHHHHHH--HHHHHHHHh
Confidence 11 1 13557776777889999999 777777764
|
| >d1sffa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase species: Escherichia coli [TaxId: 562]
Probab=99.68 E-value=1.2e-15 Score=174.36 Aligned_cols=330 Identities=15% Similarity=0.134 Sum_probs=199.5
Q ss_pred ccccccccCCCccccccccccccccccCCCCchhhhhhHHHHHHHHHHHHHHHhCCCc--cceecCcHHHHHHHHHHHHH
Q 001989 592 IPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFDS--FSLQPNAGAAGEYAGLMVIR 669 (985)
Q Consensus 592 ~~lG~~t~~~~~~~~~~~~~~~~f~~~~p~~p~e~~~G~~~~~~e~~~~la~l~G~~~--~~~~~~sGa~a~~a~l~air 669 (985)
..||++++.+..+...+....... .++. ...+...++.+.+.+++..+. ..++.+||++|++++++.+|
T Consensus 52 ~~lGh~~p~i~~ai~~q~~~~~~~---~~~~------~~~~~~~~la~~l~~~~p~~~~~~v~f~~sGseA~e~Alk~ar 122 (425)
T d1sffa_ 52 LNTGHLHPKVVAAVEAQLKKLSHT---CFQV------LAYEPYLELCEIMNQKVPGDFAKKTLLVTTGSEAVENAVKIAR 122 (425)
T ss_dssp CTTCBTCHHHHHHHHHHTTTCSCC---CTTT------EECHHHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHHH
T ss_pred hcccCCcHHHHHHHHHHHhhcCCc---cccc------ccCcHHHHHHHHHHhhhhhcccceeeeeccccchhhhHHHHhh
Confidence 457887776665554443221111 1110 001223467788888885432 35677999999999999998
Q ss_pred HHHHhcCCCCCCEEEE-cCCCCcccHHHHHHCCc-------------EEEEEcCC--CCCCCC---HHHHHHHHH--hcC
Q 001989 670 AYHKARGDHHRNVCII-PVSAHGTNPATAAMCGM-------------KIVSVGTD--AKGNIN---IEELRKAAE--ANR 728 (985)
Q Consensus 670 ~~~~~~g~~~~~~IIv-~~~~Hg~~~~~a~~~G~-------------~vv~v~~d--~~g~iD---~e~L~~~i~--~~~ 728 (985)
.|. .+.+||. ..++||....+....|. .....+.+ ...... .+..++.+. ...
T Consensus 123 ~~t------~r~~ii~~~~~yHG~t~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (425)
T d1sffa_ 123 AAT------KRSGTIAFSGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPCPLHGISEDDAIASIHRIFKNDAAP 196 (425)
T ss_dssp HHH------TCCEEEEETTCCCCSSHHHHHHSSCCTTTTTTSCCCCSSEEEECCCBGGGTBCHHHHHHHHHHHHHHTCCG
T ss_pred hhh------cccceEeecCCCcCccccchhhcCCCCcccCCcccccCCccccCCccccccccchhhHHHHHHHHHhcccc
Confidence 873 3556665 67899988766543221 12222221 111111 111222221 123
Q ss_pred CCEEEEEEEcC-CCcccccc---CHHHHHHHHHHcCCEEEEEccccccccCCCCCCcc--------CCcEEEeCCccccc
Q 001989 729 DNLSTLMVTYP-STHGVYEE---GIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYI--------GADVCHLNLHKTFC 796 (985)
Q Consensus 729 ~~t~~Vvv~~p-n~~G~i~~---di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~--------g~Di~~~s~hK~l~ 796 (985)
+++++|+++-- ...|++.+ -+++|.++|+++|+++|+|+++. |+.+.|.+ .+|+++++ |.++
T Consensus 197 ~~vaavi~EPi~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~t----G~gR~g~~~a~~~~gv~PDi~~~g--K~l~ 270 (425)
T d1sffa_ 197 EDIAAIVIEPVQGEGGFYASSPAFMQRLRALCDEHGIMLIADEVQS----GAGRTGTLFAMEQMGVAPDLTTFA--KSIA 270 (425)
T ss_dssp GGEEEEEECSBCTTTTSCBCCHHHHHHHHHHHHHHTCEEEEECTTT----TTTTTSSSSGGGGTTSCCSEEEEC--GGGG
T ss_pred cceEEEEecCccCCCCcccCCHHHHHHHHHHHHHcCceEEeccccc----cCCCcchhhHHHhcCCCccceecc--cccC
Confidence 56888888642 34566542 48999999999999999998873 44444433 37999874 8774
Q ss_pred ccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHHHHHHHHHHH
Q 001989 797 IPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAI 876 (985)
Q Consensus 797 ~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl~~~~~~~~ 876 (985)
+|.| +|.+++++++.+.+.... ..+++.|+++.+++|.+.|+.+.++.+.+ +..
T Consensus 271 ----gG~P-~~av~~~~~i~~~~~~~~------------------~~~T~~gnpl~~aaa~a~L~~i~~~~~~~---~~~ 324 (425)
T d1sffa_ 271 ----GGFP-LAGVTGRAEVMDAVAPGG------------------LGGTYAGNPIACVAALEVLKVFEQENLLQ---KAN 324 (425)
T ss_dssp ----TSSC-CEEEEEEHHHHTTSCTTS------------------BCCSSSSCHHHHHHHHHHHHHHHHTTHHH---HHH
T ss_pred ----CCcc-eEEEEEcHHHHHhhCCCC------------------CCCCCCcCHHHHHHHHHHHHHHHHhhhhh---hhh
Confidence 4555 666777877765543211 12345667888888999999987766544 455
Q ss_pred HHHHHHHHHhhc---cCCeee--cCCCCceeeEEEEEecCccccCCC----CHHHHHHHHHHCCCccCCCCCCCCCEEEE
Q 001989 877 LNANYMAKRLEK---HYPILF--RGVNGTVAHEFIVDLRGLKNTAGI----EPEDVAKRLMDYGFHGPTMSWPVPGTLMI 947 (985)
Q Consensus 877 ~~a~~l~~~L~~---g~~l~~--~~~~~~~~~~~iv~~~~~~~~~g~----~~~~v~~~L~~~Gi~~~~~~~p~~~~lri 947 (985)
...+++.++|++ .++++. .+. +. + +.+.+..-. ..+. -...+.++|.++|+++.... +..++||+
T Consensus 325 ~~g~~l~~~l~~~~~~~~~v~~vrg~-Gl-~--~~i~f~~~~-~~~~~~~~~~~~~~~~l~~~Gvl~~~~g-~~~n~i~~ 398 (425)
T d1sffa_ 325 DLGQKLKDGLLAIAEKHPEIGDVRGL-GA-M--IAIELFEDG-DHNKPDAKLTAEIVARARDKGLILLSCG-PYYNVLRI 398 (425)
T ss_dssp HHHHHHHHHHHHHHHTCTTEEEEEEE-TT-E--EEEEEBGGG-CTTSBCHHHHHHHHHHHHHTTEECEEES-TTSCEEEE
T ss_pred hhhhhhhhhhhhhHhhCCceEEEEcc-cc-E--EEEEEeccC-ccCCccHHHHHHHHHHHHHCCCEEeccC-CCCCEEEE
Confidence 666777777654 233211 111 11 2 222221100 0011 13568888999999875432 12489999
Q ss_pred eccCCCCHHHHHHHHccCChhHHHHhhcc
Q 001989 948 EPTESESKSWTGIVMLSSPSEKKLHRLKM 976 (985)
Q Consensus 948 s~t~~~t~eeId~~~~~~~l~~~~~~~~~ 976 (985)
+|+..+|++|||+ ++++++++++++|.
T Consensus 399 ~PpL~it~~eid~--~l~~l~~al~eikk 425 (425)
T d1sffa_ 399 LVPLTIEDAQIRQ--GLEIISQCFDEAKQ 425 (425)
T ss_dssp CCCTTCCHHHHHH--HHHHHHHHHHHHCC
T ss_pred ECCCCCCHHHHHH--HHHHHHHHHHHhcC
Confidence 9999999999999 88999999998874
|
| >d1qgna_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-synthase, CGS species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=99.66 E-value=5.6e-15 Score=164.75 Aligned_cols=211 Identities=19% Similarity=0.180 Sum_probs=162.3
Q ss_pred HHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCchh---h
Q 001989 215 NFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDLKD---I 291 (985)
Q Consensus 215 e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~~~---l 291 (985)
.+++.||+|.|.+. +.++++|.+|+.++++++. ++||+||+++..+......++...+.+|+++.+++..+ .
T Consensus 71 ~LE~~la~LEgg~~--a~~~sSGMaAi~~~l~~l~---~~Gd~iv~~~~~Yg~t~~l~~~~~~~~gi~~~~~~~~~~~~~ 145 (398)
T d1qgna_ 71 VLEEKISALEGAES--TLLMASGMCASTVMLLALV---PAGGHIVTTTDCYRKTRIFIETILPKMGITATVIDPADVGAL 145 (398)
T ss_dssp HHHHHHHHHHTCSE--EEEESCHHHHHHHHHHHHS---CSSCEEEEETTSCHHHHHHHHHTGGGGTCEEEEECSSCHHHH
T ss_pred HHHHHHHHHhCCce--EEEecCcchHHHHHHhhcc---cccccccccccccchhhhhhcccccccccccccccccchhhh
Confidence 46689999999875 7789999999888888763 38999999999999999999888888999999987532 2
Q ss_pred h-c-cCCCEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCCCCCcccceEEEecC-ccccccCCCCC
Q 001989 292 D-Y-KSGDVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKPPGELGADIVVGSA-QRFGVPMGYGG 367 (985)
Q Consensus 292 ~-~-l~~~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~~~~~~GaDi~v~s~-k~lg~P~~~GG 367 (985)
. . ++++|++|++..| |++..+.||++|+++||++|++++|| +.++-+++.+|-++|||||+.|+ |.+++.-..
T Consensus 146 ~~~~~~~~t~~v~~EspsNP~l~v~Di~~ia~ia~~~g~~~vVD-nT~atP~~~~Pl~~GaDiVihS~TKy~~Ghsdv-- 222 (398)
T d1qgna_ 146 ELALNQKKVNLFFTESPTNPFLRCVDIELVSKLCHEKGALVCID-GTFATPLNQKALALGADLVLHSATKFLGGHNDV-- 222 (398)
T ss_dssp HHHHHHSCEEEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEE-CTTTCTTTCCTTTTTCSEEEECTTTTTTCSSSC--
T ss_pred hhhhccccceEEEccCccccccccchHHHHHHHHhhcCCEEEec-ceeeccccCCchhhCCCEEEEechhhcCcccce--
Confidence 2 2 5789999999998 89999999999999999999999994 67777888899999999999998 888754322
Q ss_pred CcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcchHHHHH
Q 001989 368 PHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIA 447 (985)
Q Consensus 368 P~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i~ 447 (985)
..|.+..++++.+.+- ..++..|. .+ ++. ..|+...|-+-|..+.
T Consensus 223 -~~G~v~~~~~~~~~~~-------------------------~~~~~~G~-~l---~p~-----~a~ll~rgl~TL~lRm 267 (398)
T d1qgna_ 223 -LAGCISGPLKLVSEIR-------------------------NLHHILGG-AL---NPN-----AAYLIIRGMKTLHLRV 267 (398)
T ss_dssp -CCEEEEECHHHHHHHH-------------------------HHHHHHCC-CC---CHH-----HHHHHHHHGGGHHHHH
T ss_pred -eehhhcchhhhhhhhh-------------------------hhcccCCC-cC---CHH-----HHHHHHhcchHHHHHH
Confidence 2366777766654430 00111110 00 111 1244566667778888
Q ss_pred HHHHHHHHHHHHHHhcCCCeE
Q 001989 448 QRVHGLAGTFALGLKKLGTVE 468 (985)
Q Consensus 448 ~~~~~~a~~l~~~L~~~g~~~ 468 (985)
++..++|..+++.|++...++
T Consensus 268 ~~~~~nA~~lA~~L~~hp~V~ 288 (398)
T d1qgna_ 268 QQQNSTALRMAEILEAHPKVR 288 (398)
T ss_dssp HHHHHHHHHHHHHHHTCTTEE
T ss_pred HHHHHHHHHHHHHHHhCCCee
Confidence 899999999999999985465
|
| >d1fg7a_ c.67.1.1 (A:) Histidinol-phosphate aminotransferase HisC {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Histidinol-phosphate aminotransferase HisC species: Escherichia coli [TaxId: 562]
Probab=99.66 E-value=4.8e-15 Score=165.08 Aligned_cols=281 Identities=15% Similarity=0.133 Sum_probs=173.3
Q ss_pred HHHHHHHHHhCCCccceecCcHHH-HHHHHHHHHHHHHHhcCCCCCC-EEEEcCCCCcccHHHHHHCCcEEEEEcCCCCC
Q 001989 636 NLGEWLCTITGFDSFSLQPNAGAA-GEYAGLMVIRAYHKARGDHHRN-VCIIPVSAHGTNPATAAMCGMKIVSVGTDAKG 713 (985)
Q Consensus 636 e~~~~la~l~G~~~~~~~~~sGa~-a~~a~l~air~~~~~~g~~~~~-~IIv~~~~Hg~~~~~a~~~G~~vv~v~~d~~g 713 (985)
++++++++.+|.++.++..+.|++ +. .++++.+. .++| +|+++.+.+..+...++..|.+++.++.++++
T Consensus 60 ~Lr~~ia~~~gv~pe~I~it~Gs~eai---~~~~~~~~-----~pgd~~Vl~~~P~y~~~~~~~~~~g~~v~~~~~~~~~ 131 (354)
T d1fg7a_ 60 AVIENYAQYAGVKPEQVLVSRGADEGI---ELLIRAFC-----EPGKDAILYCPPTYGMYSVSAETIGVECRTVPTLDNW 131 (354)
T ss_dssp HHHHHHHHHHTSCGGGEEEESHHHHHH---HHHHHHHC-----CTTTCEEEECSSSCTHHHHHHHHHTCEEEECCCCTTS
T ss_pred HHHHHHHHHhCCChHHeeeccCchHHH---HHHHHHhh-----ccccccccccccccccchhhhhccCceeecccccccc
Confidence 788999999999987776666654 33 33344331 3666 68888888877888888999999999988888
Q ss_pred CCCHHHHHHHHHhcCCCEEEEEEEcCC-Ccccccc--CHHHHHHHHHHcCCEEEEEccccccccCCCC---CCccCCcEE
Q 001989 714 NINIEELRKAAEANRDNLSTLMVTYPS-THGVYEE--GIDEICKIIHDNGGQVYMDGANMNAQVGLTS---PGYIGADVC 787 (985)
Q Consensus 714 ~iD~e~L~~~i~~~~~~t~~Vvv~~pn-~~G~i~~--di~eI~~la~~~galliVD~a~~~~~~~l~~---pg~~g~Di~ 787 (985)
.+|++++++++ +++++|++++|| ++|.+.+ .++.+.+.+ +.+.++++|.+...-...... .....--++
T Consensus 132 ~~d~~~l~~~~----~~~~~v~~~~pnNPtG~~~~~~~~~~~~~~~-~~~~~~iidd~~~~f~~~~~~~~~~~~~~~~iv 206 (354)
T d1fg7a_ 132 QLDLQGISDKL----DGVKVVYVCSPNNPTGQLINPQDFRTLLELT-RGKAIVVADEAYIEFCPQASLAGWLAEYPHLAI 206 (354)
T ss_dssp CCCHHHHHTSC----TTEEEEEEESSCTTTCCCCCHHHHHHHHHHH-TTTCEEEEECTTGGGSGGGCSGGGTTTCTTEEE
T ss_pred ccchhhhhhcc----cccceeeccCCCccceeEeeecccccccccc-cccccccccccchhhccccccchhhcccccceE
Confidence 99999998766 478999999995 6888861 234444443 357778888765311111001 112223466
Q ss_pred EeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHH
Q 001989 788 HLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKG 867 (985)
Q Consensus 788 ~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eG 867 (985)
+.|++|+|++| |.++|++++++++.+.+... ....++++ . ....+.+.+..-..+-
T Consensus 207 ~~S~SK~~~la----GlRiGy~i~~~~~i~~l~~~--------------~~~~~~~~----~--~~~~a~~~~~~~~~~~ 262 (354)
T d1fg7a_ 207 LRTLSKAFALA----GLRCGFTLANEEVINLLMKV--------------IAPYPLST----P--VADIAAQALSPQGIVA 262 (354)
T ss_dssp EEESSSTTCCG----GGCCEEEEECHHHHHHHHHH--------------SCSSCSCH----H--HHHHHHHHTSHHHHHH
T ss_pred EeCCccccCCC----ccccccccccchhhhhhhhh--------------cCccchhh----H--HHHHHHHHHhhhcccc
Confidence 67888888654 78999999988766544210 00112221 1 1111111111111122
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCC-CCC-CCCEE
Q 001989 868 LTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTM-SWP-VPGTL 945 (985)
Q Consensus 868 l~~~~~~~~~~a~~l~~~L~~g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~-~~p-~~~~l 945 (985)
+....++..+.++++.+.|.+...+....+.+..+ +.++++ +..++.+.|.++||.+... .++ .++++
T Consensus 263 ~~~~~~~~~~~r~~l~~~l~~~~~~~~~~p~~~~f--~~~~~~--------~~~~~~~~L~~~gIlvr~~~~~~~~~~~l 332 (354)
T d1fg7a_ 263 MRERVAQIIAEREYLIAALKEIPCVEQVFDSETNY--ILARFK--------ASSAVFKSLWDQGIILRDQNKQPSLSGCL 332 (354)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSTTEEEECCCSSSE--EEEEET--------THHHHHHHHHHTTEECEECTTSTTCTTEE
T ss_pred ccccchhhhhHHHHHHHHHHhCCCcceeCCCCceE--EEEeCC--------CHHHHHHHHHHCCcEEecCCCCCCCCCEE
Confidence 23333445666778888887622221111222333 345553 5788999999999987543 232 46899
Q ss_pred EEeccCCCCHHHHHHHHccCChh
Q 001989 946 MIEPTESESKSWTGIVMLSSPSE 968 (985)
Q Consensus 946 ris~t~~~t~eeId~~~~~~~l~ 968 (985)
||++ .|+||+++ ++++|+
T Consensus 333 Risi---gt~ee~~~--~l~aLk 350 (354)
T d1fg7a_ 333 RITV---GTREESQR--VIDALR 350 (354)
T ss_dssp EEEC---CCHHHHHH--HHHHHH
T ss_pred EEEe---CCHHHHHH--HHHHHh
Confidence 9998 58999998 544443
|
| >d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase) {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tryptophan indol-lyase (tryptophanase) species: Proteus vulgaris [TaxId: 585]
Probab=99.66 E-value=4.5e-16 Score=180.09 Aligned_cols=313 Identities=17% Similarity=0.210 Sum_probs=186.4
Q ss_pred HHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcC----
Q 001989 634 FNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGT---- 709 (985)
Q Consensus 634 ~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~---- 709 (985)
+.++++.+++++|++.+ ++++||++|+++++++++++....+. .+..++.+...|.+........|+..+.++.
T Consensus 77 ~~~le~~~a~l~g~~~~-~~~~sGt~A~~~a~~~~~~~g~~~~~-~~~~~i~~~~h~~t~~~~~~~~g~~~~~~~~~~~~ 154 (465)
T d1ax4a_ 77 YYDLKDKAKELFNYDYI-IPAHQGRGAENILFPVLLKYKQKEGK-AKNPVFISNFHFDTTAAHVELNGCKAINIVTEKAF 154 (465)
T ss_dssp HHHHHHHHHHHHCCCEE-EEESSHHHHHHHHHHHHHHHHHHTTC-CSSCEEEESSCCHHHHHHHHHTTCEEEECBCGGGG
T ss_pred HHHHHHHHHHHHCCCEE-EECCCcHHHHHHHHHHHHHHHHhcCC-CCCeEEeccchhhhhHHHHHHcCCeeecccccccC
Confidence 45788999999999875 66789999999999999887766553 3344556655444556667788888876632
Q ss_pred ------CCCCCCCHHHHHHHHHhcC-CCEEEEEEEcCCCc-ccc-c--cCHHHHHHHHHHcCCEEEEEccccccccC--C
Q 001989 710 ------DAKGNINIEELRKAAEANR-DNLSTLMVTYPSTH-GVY-E--EGIDEICKIIHDNGGQVYMDGANMNAQVG--L 776 (985)
Q Consensus 710 ------d~~g~iD~e~L~~~i~~~~-~~t~~Vvv~~pn~~-G~i-~--~di~eI~~la~~~galliVD~a~~~~~~~--l 776 (985)
+..|.+|+++|+++|++.. +.+++++++.++.. |.. . .++++|+++|+++|++||+|+|+..+... .
T Consensus 155 ~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~~~~~~g~~l~~D~~~~~~~~~~~~ 234 (465)
T d1ax4a_ 155 DSETYDDWKGDFDIKKLKENIAQHGADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSARFCENAYFIK 234 (465)
T ss_dssp CTTSCCTTTTCBCHHHHHHHHHHHCGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHHH
T ss_pred CCCCCCCccCccCHHHHHHHHHhhccccccceeeccccccCceecCCHHHHHHHHHHHHHcCCEEEEECcchhhhhcccc
Confidence 1247899999999998643 35677777766543 332 1 26899999999999999999998532110 0
Q ss_pred CC-CCcc-------------CCcEEEeCCcccccccCCCCCCceEEEEEccccc--CcCCCCccccCCCCCCCCCCCCCC
Q 001989 777 TS-PGYI-------------GADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLA--PFLPSHPVVSTGGIPAPEKSQPLG 840 (985)
Q Consensus 777 ~~-pg~~-------------g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~--~~lp~~~~g~~~~~~~~~~~~~~~ 840 (985)
.+ ++.+ .+|+++++.||.+ ++|+.|++++++... ........... .....+
T Consensus 235 ~~~~~~~~~~~~~i~~~~~~~~d~~s~s~~k~~------~~~~~g~l~~~~~~~~~~~~~~~~~~~~-------~~~~~~ 301 (465)
T d1ax4a_ 235 ARDPKYKNATIKEVIFDMYKYADALTMSAKKDP------LLNIGGLVAIRDNEEIFTLARQRCVPME-------GFVTYG 301 (465)
T ss_dssp HHCGGGTTCCHHHHHHHHGGGCSEEEEETTSTT------CCSSCEEEEESSCHHHHHHHHHHHHHHT-------CSTTTT
T ss_pred cccccccccchhhhccccccccceeEeecccCc------ccccceeEeecchHHHHHhhhccccccc-------cCCCcc
Confidence 11 1111 1689999888865 578889999875422 11100000000 000011
Q ss_pred CCCCcchhhhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccc---cC
Q 001989 841 TIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKN---TA 916 (985)
Q Consensus 841 ~i~s~~~g~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~---~~ 916 (985)
..+ ....++.+......+. .+..++..++++||.++|++ ++.+.. +. + .+.+.++...+.. ..
T Consensus 302 ~~~-----~~~~~a~~~~~~e~~~----~~~~~~~~~~~~~l~~~L~~~g~~~v~-~~-~--~~~~~~~~~~~~~~~~~~ 368 (465)
T d1ax4a_ 302 GLA-----GRDMAAMVQGLEEGTE----EEYLHYRIGQVKYLGDRLREAGIPIQY-PT-G--GHAVFVDCKKLVPQIPGD 368 (465)
T ss_dssp TCC-----HHHHHHHHHHHHHTTC----HHHHHHHHHHHHHHHHHHHHTTCCBCS-SC-C--SSEEEEESTTTCTTSCGG
T ss_pred hhh-----HHHHHHHhhhhHHhhh----HHHHHHHHHHHHHHHHHHHhhcCcccc-CC-C--cceeeeehhhhcCCCccc
Confidence 111 1111111111111112 22334556678999999987 555432 21 1 2223344322110 00
Q ss_pred CCC-HHHHHHHHHHCCCccCCC--------------CCCCCCEEEEe-ccCCCCHHHHHHHHccCChhHHHHhhcc
Q 001989 917 GIE-PEDVAKRLMDYGFHGPTM--------------SWPVPGTLMIE-PTESESKSWTGIVMLSSPSEKKLHRLKM 976 (985)
Q Consensus 917 g~~-~~~v~~~L~~~Gi~~~~~--------------~~p~~~~lris-~t~~~t~eeId~~~~~~~l~~~~~~~~~ 976 (985)
+.. ...+.+.|.+.||.+... .++..+.+|++ |+...|+||||+ ++++|++++++...
T Consensus 369 ~~~~~~~~~~ll~~~GI~~~~~~~~~~~~~~~~g~~~~~~~~~vRlalP~~~~T~eeiD~--vv~~l~~v~~~~~~ 442 (465)
T d1ax4a_ 369 QFPAQAVINALYLESGVRAVEIGSFLLGRDPATGEQKHADMEFMRLTIARRVYTNDHMDY--IADALIGLKEKFAT 442 (465)
T ss_dssp GCHHHHHHHHHHHHHCEECEEESHHHHCBCTTTCSBCCCSCCEEEEECCTTSSCHHHHHH--HHHHHHTTHHHHTT
T ss_pred cchhHHHHHHHHHhcCceeccccccccccccccCCccCCCCCceEEeCCCCCCCHHHHHH--HHHHHHHHHHHHHh
Confidence 111 234555667778864321 12345789997 457789999999 78999998876544
|
| >d1ibja_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine beta-lyase, CBL species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.65 E-value=6.3e-15 Score=163.73 Aligned_cols=210 Identities=18% Similarity=0.186 Sum_probs=158.7
Q ss_pred HHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCch---hh
Q 001989 215 NFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDLK---DI 291 (985)
Q Consensus 215 e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~~---~l 291 (985)
.+++.||+|.|.+. +.++++|.+|+.+ ++++ . ++||+||+++..|..+...++.....+|+++.+++.. ++
T Consensus 53 ~le~~la~LE~~~~--a~~fsSGMaAisa-ll~l-l--~~Gd~vv~~~~~Yg~t~~l~~~~~~~~gi~~~~~d~~~~~~~ 126 (380)
T d1ibja_ 53 ALESLLAKLDKADR--AFCFTSGMAALSA-VTHL-I--KNGEEIVAGDDVYGGSDRLLSQVVPRSGVVVKRVNTTKLDEV 126 (380)
T ss_dssp HHHHHHHHHHTCSE--EEEESSHHHHHHH-HHTT-S--CTTCEEEEESSCCHHHHHHHHHTSGGGTCEEEEECTTSHHHH
T ss_pred HHHHHHHHHcCCce--EEehhhHHHHHHH-HHHh-h--CCCCEEEEEecccccccchhhhhhccccccccccCcchHHHH
Confidence 46689999999876 6788999888754 4443 1 3899999999999999999988888899999999874 44
Q ss_pred hc-cCCCEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCCCCCcccceEEEecC-ccccccCCCCCC
Q 001989 292 DY-KSGDVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKPPGELGADIVVGSA-QRFGVPMGYGGP 368 (985)
Q Consensus 292 ~~-l~~~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~~~~~~GaDi~v~s~-k~lg~P~~~GGP 368 (985)
++ ++++|++|++..| |++..+.||++|+++||++|++++|| +.++-++...|-++||||++.|. |.+++. |..
T Consensus 127 ~~ai~~~t~li~~EtpsNP~l~v~Di~~i~~iA~~~g~~~vVD-nT~atP~~~~Pl~~GaDiVvhS~TKyi~Gh---sDv 202 (380)
T d1ibja_ 127 AAAIGPQTKLVWLESPTNPRQQISDIRKISEMAHAQGALVLVD-NSIMSPVLSRPLELGADIVMHSATKFIAGH---SDV 202 (380)
T ss_dssp HHHCCSSEEEEEECSSCTTTCCCCCHHHHHHHHHTTTCEEEEE-CTTTCTTTCCGGGTTCSEEEEETTTTTTCS---SCC
T ss_pred HHHhccCccEEEeccccccccccccHHHHHHHHHHcCCeEEee-ccccccccccccccCCCEEEecccceeccc---cCc
Confidence 55 8899999999998 89999999999999999999999994 67777788889999999999998 888753 334
Q ss_pred cEEEEEEchh-hHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcchHHHHH
Q 001989 369 HAAFLATSQE-YKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIA 447 (985)
Q Consensus 369 ~~G~l~~~~~-~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i~ 447 (985)
-.|.+.++.+ +.+++ ...++..|. .. .+. ..|+...|-+-+..+.
T Consensus 203 ~~G~v~~~~~~~~~~~-------------------------~~~~~~~G~--~l--~p~-----~a~ll~rgl~Tl~lRm 248 (380)
T d1ibja_ 203 MAGVLAVKGEKLAKEV-------------------------YFLQNSEGS--GL--APF-----DCWLCLRGIKTMALRI 248 (380)
T ss_dssp CCEEEEECSHHHHHHH-------------------------HHHHHHTTC--BC--CHH-----HHHHHHHHHTTHHHHH
T ss_pred cccccccchhhHHHHH-------------------------HhhccccCC--cC--CHH-----HHHHHHhcchhhhhhH
Confidence 4577776643 33322 001111111 00 111 1244555666778888
Q ss_pred HHHHHHHHHHHHHHhcCCCeE
Q 001989 448 QRVHGLAGTFALGLKKLGTVE 468 (985)
Q Consensus 448 ~~~~~~a~~l~~~L~~~g~~~ 468 (985)
++..++|..+++.|++...++
T Consensus 249 ~~~~~nA~~lA~~L~~hp~V~ 269 (380)
T d1ibja_ 249 EKQQENARKIAMYLSSHPRVK 269 (380)
T ss_dssp HHHHHHHHHHHHHHHTCTTCC
T ss_pred HHHHHHHHHHHHHHHhCCCee
Confidence 889999999999999875344
|
| >d1lc5a_ c.67.1.1 (A:) L-threonine-O-3-phosphate decarboxylase CobD {Salmonella enterica [TaxId: 28901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: L-threonine-O-3-phosphate decarboxylase CobD species: Salmonella enterica [TaxId: 28901]
Probab=99.64 E-value=1.6e-15 Score=168.99 Aligned_cols=282 Identities=13% Similarity=0.051 Sum_probs=173.9
Q ss_pred HHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcCCCC--C
Q 001989 636 NLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAK--G 713 (985)
Q Consensus 636 e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~d~~--g 713 (985)
++++++|+.+|.+..++..++|++... ..++... .++.+++..+.++.+.......+.+++.+|++.+ +
T Consensus 61 ~Lr~aia~~~~v~~~~I~~~~g~~~~~--~~~~~~~-------~~~~~~v~~p~~~~~~~~~~~~~~~~~~v~~~~~~~~ 131 (355)
T d1lc5a_ 61 HLHQALARHHQVPASWILAGNGETESI--FTVASGL-------KPRRAMIVTPGFAEYGRALAQSGCEIRRWSLREADGW 131 (355)
T ss_dssp HHHHHHHHHHTSCGGGEEEESSHHHHH--HHHHHHH-------CCSEEEEEESCCTHHHHHHHHTTCEEEEEECCGGGTT
T ss_pred HHHHHHHHHhCCCHHHEEecccHHHHH--HHHHhhh-------ccccccccCCccceeccccccccccceeeeeeccCCc
Confidence 688999999999987777666665321 2222221 2233444444455566667788999999998543 4
Q ss_pred CCCHHHHHHHHHhcCCCEEEEEEEcCC-Cccccc--cCHHHHHHHHHHcCCEEEEEccccccccCCCC----CCccCCcE
Q 001989 714 NINIEELRKAAEANRDNLSTLMVTYPS-THGVYE--EGIDEICKIIHDNGGQVYMDGANMNAQVGLTS----PGYIGADV 786 (985)
Q Consensus 714 ~iD~e~L~~~i~~~~~~t~~Vvv~~pn-~~G~i~--~di~eI~~la~~~galliVD~a~~~~~~~l~~----pg~~g~Di 786 (985)
.++ +++.+++. +++++|++++|| ++|.+. +++++|.++|+++++++++|.++......-.. ....+-.+
T Consensus 132 ~~~-~~~~~~~~---~~~~~v~l~nP~NPtG~~~~~e~l~~i~~~a~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~i 207 (355)
T d1lc5a_ 132 QLT-DAILEALT---PDLDCLFLCTPNNPTGLLPERPLLQAIADRCKSLNINLILDEAFIDFIPHETGFIPALKDNPHIW 207 (355)
T ss_dssp CCC-TTHHHHCC---TTCCEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGSTTCCCSGGGCTTCTTEE
T ss_pred cce-eeeeeccc---cccceeeeecccCcccccchhhhhhhhhhhccccccccccccceeeeeeecccccccccccccce
Confidence 444 55666665 789999999995 799875 25888899999999999999987421110000 11223347
Q ss_pred EEeCCcccccccCCCCCCceEEEEEccccc-CcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcH
Q 001989 787 CHLNLHKTFCIPHGGGGPGMGPIGVKKHLA-PFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGS 865 (985)
Q Consensus 787 ~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~-~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~ 865 (985)
++.|++|+|++ .|.++|+++++++.. ..+. .. ....... .....++.+.+. ..
T Consensus 208 ~~~S~SK~~~l----~GlR~G~~i~~~~~~~~~~~-~~-------------~~~~~~~------~~~~~~a~~~l~--~~ 261 (355)
T d1lc5a_ 208 VLRSLTKFYAI----PGLRLGYLVNSDDAAMARMR-RQ-------------QMPWSVN------ALAALAGEVALQ--DS 261 (355)
T ss_dssp EEEESTTTTTC----TTTCCEEEECCCHHHHHHHH-HH-------------SCTTCSC------HHHHHHHHHGGG--CH
T ss_pred eeccccccccc----ccccccceeccchhhhHHHH-hh-------------cCCcccc------cccccccccccc--cc
Confidence 77888888865 478999999875432 2221 00 0000111 111112222222 23
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCC-CCCC--CC
Q 001989 866 KGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPT-MSWP--VP 942 (985)
Q Consensus 866 eGl~~~~~~~~~~a~~l~~~L~~g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~-~~~p--~~ 942 (985)
+.+.+..++..+..+++.+.|.+...+.+.+..+ .+ +.++++ .+..+++++|.++||.+.. ..|+ .+
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~~~-~f--~~~~~~-------~~~~~~~~~L~~~gv~vr~~~~f~~~~~ 331 (355)
T d1lc5a_ 262 AWQQATWHWLREEGARFYQALCQLPLLTVYPGRA-NY--LLLRCE-------REDIDLQRRLLTQRILIRSCANYPGLDS 331 (355)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSTTEEECCCSS-SE--EEEEES-------CTTCCHHHHHHTTTEECEECTTSTTCCT
T ss_pred chhHHHHHHHHHHHHHHHHHHhhcCCcEECCCCC-EE--EEEECC-------CCHHHHHHHHHHCCcEEEeCccCCCCCC
Confidence 4455556667777888888998732332222222 22 345654 2456789999999999753 2343 25
Q ss_pred CEEEEeccCCCCHHHHHHHHccCChhHHH
Q 001989 943 GTLMIEPTESESKSWTGIVMLSSPSEKKL 971 (985)
Q Consensus 943 ~~lris~t~~~t~eeId~~~~~~~l~~~~ 971 (985)
+++||++ .+++|+++ ++++|++++
T Consensus 332 ~~iRis~---~~~~e~~~--li~aL~~il 355 (355)
T d1lc5a_ 332 RYYRVAI---RSAAQNER--LLAALRNVL 355 (355)
T ss_dssp TEEEEEC---CCHHHHHH--HHHHHHHHC
T ss_pred CEEEEEe---CCHHHHHH--HHHHHHHhC
Confidence 8999998 48999999 778887763
|
| >d1cs1a_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-synthase, CGS species: Escherichia coli [TaxId: 562]
Probab=99.63 E-value=1.2e-14 Score=161.51 Aligned_cols=212 Identities=17% Similarity=0.144 Sum_probs=159.8
Q ss_pred HHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCch---hh
Q 001989 215 NFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDLK---DI 291 (985)
Q Consensus 215 e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~~---~l 291 (985)
.+++.||+|.|.+. +.++++|.+|+.++++++. ++||+|++++..+......+....+..|+++.+++.. ++
T Consensus 54 ~le~~la~LEgg~~--a~~~sSGMaAi~~~l~~l~---~~gd~vv~~~~~yg~t~~~~~~~~~~~g~~~~~~d~~d~~~~ 128 (384)
T d1cs1a_ 54 VVQRALAELEGGAG--AVLTNTGMSAIHLVTTVFL---KPGDLLVAPHDCYGGSYRLFDSLAKRGCYRVLFVDQGDEQAL 128 (384)
T ss_dssp HHHHHHHHHHTCSE--EEEESSHHHHHHHHHHHHC---CTTCEEEEETTCCHHHHHHHHHHHTTTSCEEEEECTTCHHHH
T ss_pred HHHHHHHHHhCCCc--eEEecChHHHHHHHHhhcc---cccceecccccccchhhhhhhhhhcccccccccccCCCHHHH
Confidence 46689999999876 7789999998888877652 3899999999999998888888888899999998764 44
Q ss_pred hc-cCCCEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCCCCCcccceEEEecC-ccccccCCCCCC
Q 001989 292 DY-KSGDVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKPPGELGADIVVGSA-QRFGVPMGYGGP 368 (985)
Q Consensus 292 ~~-l~~~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~~~~~~GaDi~v~s~-k~lg~P~~~GGP 368 (985)
+. +.++|++|++..| |++..+.||++|+++||++|++++| ++.++-+++..|-++||||++.|+ |.+++ .|.-
T Consensus 129 ~~~~~~~t~~v~~EspsNP~l~v~Di~~i~~ia~~~g~~~vV-DNT~atP~~~~Pl~~GaDiVvhS~TKyi~G---hsdv 204 (384)
T d1cs1a_ 129 RAALAEKPKLVLVESPSNPLLRVVDIAKICHLAREVGAVSVV-DNTFLSPALQNPLALGADLVLHSCTKYLNG---HSDV 204 (384)
T ss_dssp HHHHHTCCSEEEEECSCTTTCCCCCHHHHHHHHHHTTCEEEE-ECTTTCTTTCCGGGGTCSEEEEETTTTTTC---SSCC
T ss_pred HhhccccccEEEEeccccccceeccHHHHhhhhhhcCcEEEE-eccccCcccccccccCCCEEEEcccccccc---CCCc
Confidence 45 7899999999998 8999999999999999999999999 467777888899999999999998 88864 2333
Q ss_pred cEEEEEEch-hhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcchHHHHH
Q 001989 369 HAAFLATSQ-EYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIA 447 (985)
Q Consensus 369 ~~G~l~~~~-~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i~ 447 (985)
-+|.+.++. .+.+.+ ...++.-|. + .++. ..|+...|-+-|.-+.
T Consensus 205 ~~G~vv~~~~~~~~~~-------------------------~~~~~~~G~--~--~~p~-----~a~ll~rgL~TL~lRm 250 (384)
T d1cs1a_ 205 VAGVVIAKDPDVVTEL-------------------------AWWANNIGV--T--GGAF-----DSYLLLRGLRTLVPRM 250 (384)
T ss_dssp CCEEEEESSHHHHHHH-------------------------HHHHHHHTC--B--CCHH-----HHHHHHHHHTTHHHHH
T ss_pred ccccccCCchhhhhhh-------------------------hhhhhhhhh--c--cccc-----cHHHHhhccchhHHHH
Confidence 346666644 322222 000111110 0 0111 1244555666677788
Q ss_pred HHHHHHHHHHHHHHhcCCCeEE
Q 001989 448 QRVHGLAGTFALGLKKLGTVEV 469 (985)
Q Consensus 448 ~~~~~~a~~l~~~L~~~g~~~~ 469 (985)
++..++|..+++.|++...++-
T Consensus 251 ~~~~~nA~~lA~~L~~hp~V~~ 272 (384)
T d1cs1a_ 251 ELAQRNAQAIVKYLQTQPLVKK 272 (384)
T ss_dssp HHHHHHHHHHHHHHTTCTTEEE
T ss_pred HHHHHHHHHHHHhcccCCceee
Confidence 8889999999999998854643
|
| >d2aeua1 c.67.1.8 (A:9-374) Hypothetical protein MJ0158 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SelA-like domain: Hypothetical protein MJ0158 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.62 E-value=6.1e-16 Score=173.33 Aligned_cols=160 Identities=16% Similarity=0.200 Sum_probs=119.4
Q ss_pred HHHHHHHHHHHhCCCcc--ceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEE-c-CCCCcccHHHHHHCCcEEEEEcC
Q 001989 634 FNNLGEWLCTITGFDSF--SLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCII-P-VSAHGTNPATAAMCGMKIVSVGT 709 (985)
Q Consensus 634 ~~e~~~~la~l~G~~~~--~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv-~-~~~Hg~~~~~a~~~G~~vv~v~~ 709 (985)
..++++..++.++.+.. .+.+++|++|+.++++++ .++++|++ + ...|.++...++..|++++ ++
T Consensus 52 ~~~l~~~~~~~~~~~~~e~~~~~~~~~~a~~~~l~al---------~~~~~vi~~~~~~~~~~~~~~~~l~g~~~v--~~ 120 (366)
T d2aeua1 52 AEKVNEYGLKHLGGDENDKCVGFNRTSSAILATILAL---------KPKKVIHYLPELPGHPSIERSCKIVNAKYF--ES 120 (366)
T ss_dssp HHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHH---------CCSEEEEECSSSSCCTHHHHHHHHTTCEEE--EE
T ss_pred HHHHHHHHHHHccCCCccEEEEeCCHHHHHHHHHHHh---------CCCCEEEEecCCCcchhHHHHHHhcCCeEE--CC
Confidence 34566667777776542 356678888887776654 24555544 4 4678888888899999864 44
Q ss_pred CCCCCCCHHHHHHHHHhcCCCEEEEEEEcC-CC-ccccccCHHHHHHHHHHcCCEEEEEcccccccc---CCCCCCccCC
Q 001989 710 DAKGNINIEELRKAAEANRDNLSTLMVTYP-ST-HGVYEEGIDEICKIIHDNGGQVYMDGANMNAQV---GLTSPGYIGA 784 (985)
Q Consensus 710 d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~-~G~i~~di~eI~~la~~~galliVD~a~~~~~~---~l~~pg~~g~ 784 (985)
+ |+++|+++|+ ++|++|++.+| |+ .+.+. |+++|+++||++|+++++|+++....- ....+.++|+
T Consensus 121 ~-----d~e~l~~~i~---~~tk~i~~~~p~n~~~~~~~-~l~~i~~ia~~~~~~~i~De~y~~~~~~~~~~~~~~~~~~ 191 (366)
T d2aeua1 121 D-----KVGEILNKID---KDTLVIITGSTMDLKVIELE-NFKKVINTAKNKEAIVFVDDASGARVRLLFNQPPALKLGA 191 (366)
T ss_dssp S-----CHHHHHTTCC---TTEEEEEECBCTTSCBCCHH-HHHHHHHHHHHHTCCEEEECTTHHHHHHHTTCCCHHHHTC
T ss_pred C-----CHHHHHHhcC---CCceEEEEEecCCCCcCCHH-HHHHHHHHhccCcEEEEEecCccccccccccCCCHhhcCc
Confidence 3 8999999998 89999999988 44 44455 899999999999999999999843221 1112346789
Q ss_pred cEEEeCCcccccccCCCCCCceEEEEEcccccCcC
Q 001989 785 DVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFL 819 (985)
Q Consensus 785 Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~l 819 (985)
|++++|+||++ |||++|++++++++.+.+
T Consensus 192 di~~~S~sK~~------~g~~~G~i~~~~~~i~~~ 220 (366)
T d2aeua1 192 DLVVTSTDKLM------EGPRGGLLAGKKELVDKI 220 (366)
T ss_dssp SEEEEETTSSS------SSCSCEEEEEEHHHHHHH
T ss_pred eEEEecccccc------cccceeEEEecHHHHHHH
Confidence 99999999976 589999999998877654
|
| >d1iaya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Tomato (Lycopersicon esculentum) [TaxId: 4081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) species: Tomato (Lycopersicon esculentum) [TaxId: 4081]
Probab=99.62 E-value=1.2e-14 Score=166.24 Aligned_cols=309 Identities=12% Similarity=0.119 Sum_probs=183.8
Q ss_pred hhhHHHHHHHHHHHHHHHhCC----CccceecCcH-HHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHH-HC
Q 001989 627 AQGYQEMFNNLGEWLCTITGF----DSFSLQPNAG-AAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAA-MC 700 (985)
Q Consensus 627 ~~G~~~~~~e~~~~la~l~G~----~~~~~~~~sG-a~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~-~~ 700 (985)
.+|..++.+.+.+++.+.+|. +...+..++| ++++..++ +.+ ..+||+|+++++.|+.+...+. ..
T Consensus 82 ~~G~~~LR~aiA~~l~~~~~~~~~~~~e~Ivit~G~~~al~~~~---~~l-----~~~Gd~Vlv~~P~y~~~~~~~~~~~ 153 (428)
T d1iaya_ 82 YHGLPEFRKAIAKFMEKTRGGRVRFDPERVVMAGGATGANETII---FCL-----ADPGDAFLVPSPYYPAFNRDLRWRT 153 (428)
T ss_dssp TTCCHHHHHHHHHHHHHHTTTCSCCCTTSCEEEEHHHHHHHHHH---HHH-----CCTTCEEEEESSCCTTHHHHTTTTT
T ss_pred CcchHHHHHHHHHHHHHHhCCCCCCChhhEEEcCCHHHHHHHHH---HHh-----CCCCCEEEEccCCchHHHHHHHHhc
Confidence 367777777777777777763 2334554445 44554333 332 1478999999988877766655 45
Q ss_pred CcEEEEEcCCC--CCCCCHHHHHHHHHh---cCCCEEEEEEEcC-CCccccc--cCHHHHHHHHHHcCCEEEEEcccccc
Q 001989 701 GMKIVSVGTDA--KGNINIEELRKAAEA---NRDNLSTLMVTYP-STHGVYE--EGIDEICKIIHDNGGQVYMDGANMNA 772 (985)
Q Consensus 701 G~~vv~v~~d~--~g~iD~e~L~~~i~~---~~~~t~~Vvv~~p-n~~G~i~--~di~eI~~la~~~galliVD~a~~~~ 772 (985)
|++++.++.+. ++.+|+++++.+++. ..+++++|++++| |++|.+. .++++|.++|+++|+++++|+++...
T Consensus 154 g~~~v~v~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~nP~NPtG~~~s~~~~~~i~~~a~~~~~~vI~De~Y~~~ 233 (428)
T d1iaya_ 154 GVQLIPIHCESSNNFKITSKAVKEAYENAQKSNIKVKGLILTNPSNPLGTTLDKDTLKSVLSFTNQHNIHLVCDEIYAAT 233 (428)
T ss_dssp CCEEEEECCCTTTTTCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEECTTGGG
T ss_pred CCeEEEeecccccccccccccccchhhhhhccCCCceEEEEccCCCcccccccccccchhheeeccCcEEEEeccccccc
Confidence 89999998864 468999998876542 3468999999999 5789885 24899999999999999999997421
Q ss_pred ccCCCCC---------C-------ccCCcEEEeCCcccccccCCCCCCceEEEEEcc-cccCcCCCCccccCCCCCCCCC
Q 001989 773 QVGLTSP---------G-------YIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKK-HLAPFLPSHPVVSTGGIPAPEK 835 (985)
Q Consensus 773 ~~~l~~p---------g-------~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~-~l~~~lp~~~~g~~~~~~~~~~ 835 (985)
. +..+ . ...--+++.|++|.|++| |.++|+++... .+.+.+...
T Consensus 234 ~--~~~~~~~s~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~----GlRiG~~~~~~~~l~~~~~~~------------- 294 (428)
T d1iaya_ 234 V--FDTPQFVSIAEILDEQEMTYCNKDLVHIVYSLSKDMGLP----GFRVGIIYSFNDDVVNCARKM------------- 294 (428)
T ss_dssp C--CSSSCCCCHHHHHTSGGGTTSCTTSEEEEEESTTTSSCG----GGCEEEEEESCHHHHHHHHHH-------------
T ss_pred c--cCcccccccccccchhhccccccceEEEEecCCCcccCC----Ccccccccccccchhhhhhhh-------------
Confidence 1 1110 0 011136677888988653 78899998854 333322100
Q ss_pred CCCCCCCCCcchhhhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccc
Q 001989 836 SQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKN 914 (985)
Q Consensus 836 ~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~ 914 (985)
......++ ......++.......-.+-+++..+...++.+++.+.|+. |+++. .+.+.++ +.++++....
T Consensus 295 -~~~~~~~~----~~~~~~~a~l~~~~~~~~~~~~~~~~l~~r~~~~~~~L~~~gi~~~--~p~gg~f--~w~~l~~~~~ 365 (428)
T d1iaya_ 295 -SSFGLVST----QTQYFLAAMLSDEKFVDNFLRESAMRLGKRHKHFTNGLEVVGIKCL--KNNAGLF--CWMDLRPLLR 365 (428)
T ss_dssp -HTTSCCCH----HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCBC--CCSSSSE--EEEECGGGCS
T ss_pred -hccccccc----ccccchhhhhhhhccccccccccccccchhHHHHHHHHHhCCCEEe--cCCcceE--EEEECccccc
Confidence 00011111 1111111111111111223344445556677888888876 55543 2333333 3466543211
Q ss_pred cCCC-CHHHHHHHHHH-CCCccCC-CCC--CCCCEEEEeccCCCCHHHHHHHHccCChhHHHHhh
Q 001989 915 TAGI-EPEDVAKRLMD-YGFHGPT-MSW--PVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRL 974 (985)
Q Consensus 915 ~~g~-~~~~v~~~L~~-~Gi~~~~-~~~--p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~ 974 (985)
.... +..+++++|.+ +|+.+.+ ..| ..++++||++.. .++++|+. .++.|++.+...
T Consensus 366 ~~~~~~~~~l~~~Ll~~~gV~v~PG~~F~~~~~g~~Ris~a~-~~~~~l~~--al~Rl~~~l~~~ 427 (428)
T d1iaya_ 366 ESTFDSEMSLWRVIINDVKLNVSPGSSFECQEPGWFRVCFAN-MDDGTVDI--ALARIRRFVGVE 427 (428)
T ss_dssp SSSHHHHHHHHHHHHHTSCEECEEGGGGTCSSSSEEEEECSS-SCHHHHHH--HHHHHHHHHHTT
T ss_pred cCCCCCHHHHHHHHHHhCCEEEEcchhcCCCCCCEEEEEeCC-CCHHHHHH--HHHHHHHHHhhc
Confidence 1111 23467888865 5987632 222 235899999853 45677888 667777777543
|
| >d1o4sa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Thermotoga maritima [TaxId: 2336]
Probab=99.62 E-value=5.7e-15 Score=165.66 Aligned_cols=339 Identities=12% Similarity=0.078 Sum_probs=205.7
Q ss_pred HHHHHHHHHhccccCcccccccccccccCCCccccccc----cccccccccCCCCchhhhhhHHHHHHHHHHHHHHHhCC
Q 001989 572 ELLRYIHLLQSKELSLCHSMIPLGSCTMKLNATTEMMP----VTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGF 647 (985)
Q Consensus 572 e~~~~l~~l~~~~~~~~~~~~~lG~~t~~~~~~~~~~~----~~~~~f~~~~p~~p~e~~~G~~~~~~e~~~~la~l~G~ 647 (985)
++.+..+++..++. .++.|+.++|.+++..+... ...... +.|.+ .+|..++.+.+.+++....|.
T Consensus 15 ~~~~~a~~~~~~G~----~vI~l~~G~p~~~~p~~i~~~~~~~~~~~~---~~Y~~---~~G~~~lR~aia~~~~~~~~~ 84 (375)
T d1o4sa_ 15 ELDAKAKALIKKGE----DVINLTAGEPDFPTPEPVVEEAVRFLQKGE---VKYTD---PRGIYELREGIAKRIGERYKK 84 (375)
T ss_dssp HHHHHHHHHHHTTC----CCEECCCSSCSSCCCHHHHHHHHHHHTTCC---CCCCC---TTCCHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHCCC----CeEECCCcCCCCCCCHHHHHHHHHHHhcCC---cCCCC---CcCCHHHHHHHHhhhhhcccc
Confidence 44444555544442 26788888887665332221 111122 22333 468777777777777777775
Q ss_pred Cc--ccee-cCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcCCC--CCCCCHHHHHH
Q 001989 648 DS--FSLQ-PNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDA--KGNINIEELRK 722 (985)
Q Consensus 648 ~~--~~~~-~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~d~--~g~iD~e~L~~ 722 (985)
+. ..+. .+++++|...+ ++.+ ..++++|+++++.+..+.......|..+..++.++ ++..|.+.++.
T Consensus 85 ~~~~~~i~~t~G~~~al~~~---~~~l-----~~~gd~vlv~~P~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (375)
T d1o4sa_ 85 DISPDQVVVTNGAKQALFNA---FMAL-----LDPGDEVIVFSPVWVSYIPQIILAGGTVNVVETFMSKNFQPSLEEVEG 156 (375)
T ss_dssp CCCGGGEEEESHHHHHHHHH---HHHH-----CCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECCGGGTTCCCHHHHHH
T ss_pred ccccccccccCcHHHHHHHH---HHHH-----hCCCCEEEEccCccccchhhhhccccccccccccccccccchhHHHHH
Confidence 43 4444 44445555333 3332 14788999998888788777888899888887754 36788998888
Q ss_pred HHHhcCCCEEEEEEEcC-CCccccc--cCHHHHHHHHHHcCCEEEEEccccccccCCCC------CCccCCcEEEeCCcc
Q 001989 723 AAEANRDNLSTLMVTYP-STHGVYE--EGIDEICKIIHDNGGQVYMDGANMNAQVGLTS------PGYIGADVCHLNLHK 793 (985)
Q Consensus 723 ~i~~~~~~t~~Vvv~~p-n~~G~i~--~di~eI~~la~~~galliVD~a~~~~~~~l~~------pg~~g~Di~~~s~hK 793 (985)
... ++++++++++| |++|.+. ..+++|.++|++++++++.|.++......... ++..+--+++.|+.|
T Consensus 157 ~~~---~~~~~~~l~nP~NPTG~~~s~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK 233 (375)
T d1o4sa_ 157 LLV---GKTKAVLINSPNNPTGVVYRREFLEGLVRLAKKRNFYIISDEVYDSLVYTDEFTSILDVSEGFDRIVYINGFSK 233 (375)
T ss_dssp TCC---TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBCSSCCCCHHHHCSSSTTEEEEEESTT
T ss_pred hhc---cCccEEEEeCCCCCccCCCCHHHHHHHHHhHHHcCCceehHhhhccccccccccccccccCCCCCEEEEeechh
Confidence 766 78999999999 5799885 36888999999999999999976322111100 122334467788889
Q ss_pred cccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHHHHHHHH
Q 001989 794 TFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASK 873 (985)
Q Consensus 794 ~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl~~~~~ 873 (985)
+|+.| |.++|++++.++....+..... ..+.... . .... .....+ .+......+
T Consensus 234 ~~~l~----G~R~G~~~~~~~~~~~~~~~~~--------------~~~~~~~---~-~~~~---~~~~~~-~~~~~~~~~ 287 (375)
T d1o4sa_ 234 SHSMT----GWRVGYLISSEKVATAVSKIQS--------------HTTSCIN---T-VAQY---AALKAL-EVDNSYMVQ 287 (375)
T ss_dssp TTTCG----GGCCEEEECCHHHHHHHHHHHH--------------HHTCSCC---H-HHHH---HHHHHT-TCCCHHHHH
T ss_pred hccCC----ccccccccccccchhhhhhhhc--------------ccccccc---c-cchh---hhhhhc-ccchhhhHH
Confidence 88654 7899999988765533211000 0011110 0 1111 111111 112233344
Q ss_pred HHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHH-HCCCccCC-CCCCCCCEEEEecc
Q 001989 874 IAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLM-DYGFHGPT-MSWPVPGTLMIEPT 950 (985)
Q Consensus 874 ~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~-~~Gi~~~~-~~~p~~~~lris~t 950 (985)
....+.+++.+.|++ ++.+. .+.+.++ +.++++ + +..+++.+|. ++||.+.. ..|..++++||++.
T Consensus 288 ~~~~r~~~~~~~l~~~g~~~~--~p~gg~f--~~~~~~------~-~~~~~~~~ll~~~gV~v~pG~~F~~~g~iRis~~ 356 (375)
T d1o4sa_ 288 TFKERKNFVVERLKKMGVKFV--EPEGAFY--LFFKVR------G-DDVKFCERLLEEKKVALVPGSAFLKPGFVRLSFA 356 (375)
T ss_dssp HHHHHHHHHHHHHHHTTCCCC--CCSBSSE--EEEECS------S-CHHHHHHHHHHHHCEECEEGGGGTCTTEEEEECC
T ss_pred HHHHHHHHHHHHHHhcCceEe--cCCccEE--EEEECC------C-CHHHHHHHHHHhCCEEEEEccccCCCCeEEEEEc
Confidence 456667788888876 55542 2333333 345654 2 4566666655 56998643 23334689999985
Q ss_pred CCCCHHHHHHHHccCChhHHHH
Q 001989 951 ESESKSWTGIVMLSSPSEKKLH 972 (985)
Q Consensus 951 ~~~t~eeId~~~~~~~l~~~~~ 972 (985)
.++|+|++ .++.|+++++
T Consensus 357 --~~~e~l~~--al~rl~~~l~ 374 (375)
T d1o4sa_ 357 --TSIERLTE--ALDRIEDFLN 374 (375)
T ss_dssp --SCHHHHHH--HHHHHHHHHT
T ss_pred --CCHHHHHH--HHHHHHHHhc
Confidence 57888888 6677777664
|
| >d1xi9a_ c.67.1.1 (A:) Putative alanine aminotransferase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative alanine aminotransferase species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.62 E-value=2.7e-15 Score=169.70 Aligned_cols=307 Identities=14% Similarity=0.054 Sum_probs=187.3
Q ss_pred hhhHHHHHHHHHHHHHHHhCCCc--cceecCcHH-HHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcE
Q 001989 627 AQGYQEMFNNLGEWLCTITGFDS--FSLQPNAGA-AGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMK 703 (985)
Q Consensus 627 ~~G~~~~~~e~~~~la~l~G~~~--~~~~~~sGa-~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~ 703 (985)
.+|..++.+.+.+++.+..|.+. .++..++|+ ++... +++.+ ..++++|+++++.+..+...++..|.+
T Consensus 69 ~~G~~~LR~aia~~~~~~~g~~~~~~~i~i~~G~~~~~~~---~~~~~-----~~~Gd~vlv~~P~y~~~~~~~~~~g~~ 140 (395)
T d1xi9a_ 69 SEGLPELRKAIVEREKRKNGVDITPDDVRVTAAVTEALQL---IFGAL-----LDPGDEILVPGPSYPPYTGLVKFYGGK 140 (395)
T ss_dssp TTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHH---HHHHH-----CCTTCEEEEEESCCHHHHHHHHHTTCE
T ss_pred CCCCHHHHHHHHHhhhhcccccccccccccccccchhhhh---hhhhh-----cCCCCEEEEcCCccccchhhhhhcCCE
Confidence 46777777778888888888754 455544444 44432 23322 147899999988777777778899999
Q ss_pred EEEEcCCC--CCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccc--cCHHHHHHHHHHcCCEEEEEccccccc-cC-C
Q 001989 704 IVSVGTDA--KGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYE--EGIDEICKIIHDNGGQVYMDGANMNAQ-VG-L 776 (985)
Q Consensus 704 vv~v~~d~--~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~--~di~eI~~la~~~galliVD~a~~~~~-~~-l 776 (985)
++.++.+. ++.+|++++++++. +++++|++++| |++|.+. ..+++|+++|+++|++++.|.++.... .. .
T Consensus 141 ~v~v~~~~~~~~~~d~~~~~~~~~---~~~~~v~l~~P~NPTG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~ 217 (395)
T d1xi9a_ 141 PVEYRTIEEEDWQPDIDDIRKKIT---DRTKAIAVINPNNPTGALYDKKTLEEILNIAGEYEIPVISDEIYDLMTYEGEH 217 (395)
T ss_dssp EEEEEEEGGGTSEECHHHHHHHCC---TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBSSSCC
T ss_pred EEEEeccccccccchHHHHHHhhc---ccccEEEecCCCCCccchhhHHHHHHHHhhhhhcCeeEEeccccccccccccc
Confidence 99988643 46799999999987 89999999999 5799986 357899999999999999999873211 11 0
Q ss_pred CCCC---ccCCcEEEeCCcccccccCCCCCCceEEEEEcc--cccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhH
Q 001989 777 TSPG---YIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKK--HLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSAL 851 (985)
Q Consensus 777 ~~pg---~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~--~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~ 851 (985)
..+. ...-=+++.|+.|+|++| |.++|++++.. .....+....... .....+.+..++.
T Consensus 218 ~~~~~~~~~~~vi~~~S~SK~~~~~----GlRvG~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~q~- 281 (395)
T d1xi9a_ 218 ISPGSLTKDVPVIVMNGLSKVYFAT----GWRLGYMYFVDPENKLSEVREAIDRL-----------ARIRLCPNTPAQF- 281 (395)
T ss_dssp CCHHHHCSSSCEEEEEESTTTTCCG----GGCCEEEEEECTTCTTHHHHHHHHHH-----------HHHTCCSCSHHHH-
T ss_pred cchhhcCCCCCEEEEeCcchhcccc----hhhcEeeEecCHHHHHHHHHHHHHHh-----------hcCCCCcCHHHHH-
Confidence 0111 111126677888988665 78899887642 1111110000000 0001111111121
Q ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhccCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHH-HC
Q 001989 852 ILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLM-DY 930 (985)
Q Consensus 852 ~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~-~~ 930 (985)
++..++. -+.+-+++..+...++++++.+.|++...+.+..+.+..+ +.++++. ....+..++++.|. ++
T Consensus 282 ---a~~~~l~-~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~p~gg~~--~~~~l~~---~~~~~~~~~~~~ll~~~ 352 (395)
T d1xi9a_ 282 ---AAIAGLT-GPMDYLKEYMKKLKERRDYIYKRLNEIPGISTTKPQGAFY--IFPKIEV---GPWKNDKEFVLDVLHNA 352 (395)
T ss_dssp ---HHHHHHH-SCCHHHHHHHHHHHHHHHHHHHHHHTSTTEECCCCCBSSE--ECCEECS---CSCSSHHHHHHHHHHHH
T ss_pred ---HHHHHhc-CCHHHHHHHHHHHHHHHHHHHHHHHhCCCceecCCCeeEE--EeEECCC---CCCCCHHHHHHHHHHhC
Confidence 1112222 2334456666667788899999998732333333333333 2345541 01245667777655 56
Q ss_pred CCccCC-CCCC--CCCEEEEeccCCCCHHHHHHHHccCChhHHHHh
Q 001989 931 GFHGPT-MSWP--VPGTLMIEPTESESKSWTGIVMLSSPSEKKLHR 973 (985)
Q Consensus 931 Gi~~~~-~~~p--~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~ 973 (985)
||.+.+ ..|. .++++||++. .++|++++ .++.|++++++
T Consensus 353 gV~v~PG~~Fg~~~~~~~Ris~~--~~~e~l~e--al~rl~~~l~e 394 (395)
T d1xi9a_ 353 HVLFVHGSGFGEYGAGHFRAVFL--PPIEILEE--AMDRFEKFMKE 394 (395)
T ss_dssp CEECEEGGGGCGGGTTBEEEECC--SCHHHHHH--HHHHHHHHHHH
T ss_pred CEEEEcChhhCCCCCCEEEEEec--CCHHHHHH--HHHHHHHHHhc
Confidence 987632 2332 3578999974 57888888 77778777764
|
| >d1zoda1 c.67.1.4 (A:3-433) Dialkylglycine decarboxylase {Pseudomonas cepacia [TaxId: 292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Dialkylglycine decarboxylase species: Pseudomonas cepacia [TaxId: 292]
Probab=99.62 E-value=1.7e-14 Score=164.80 Aligned_cols=331 Identities=16% Similarity=0.143 Sum_probs=193.2
Q ss_pred ccccccccCCCccccccccccccccccCCCCchhhhhhHHHHHHHHHHHHHHHhC--CCccceecCcHHHHHHHHHHHHH
Q 001989 592 IPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITG--FDSFSLQPNAGAAGEYAGLMVIR 669 (985)
Q Consensus 592 ~~lG~~t~~~~~~~~~~~~~~~~f~~~~p~~p~e~~~G~~~~~~e~~~~la~l~G--~~~~~~~~~sGa~a~~a~l~air 669 (985)
..||++++.+..+...+........+..+. +...++.+.|++++. .+. .++.+||++|++++++.+|
T Consensus 53 ~~lGh~~p~v~~ai~~q~~~~~~~~~~~~~----------~~~~~la~~L~~~~~~~~~~-v~f~~sGseA~e~Alk~Ar 121 (431)
T d1zoda1 53 AVLGHCHPEIVSVIGEYAGKLDHLFSEMLS----------RPVVDLATRLANITPPGLDR-ALLLSTGAESNEAAIRMAK 121 (431)
T ss_dssp CTTCBTCHHHHHHHHHHHHHCCCCCTTCCC----------HHHHHHHHHHHHHSCTTCCE-EEEESCHHHHHHHHHHHHH
T ss_pred hhhcCCCHHHHHHHHHHHhhcccccccccc----------HHHHHHHHHHHHhCCcccce-eeecccccchHHHHHHHHH
Confidence 457887666665544443222221111111 123467788888873 333 4677899999999999998
Q ss_pred HHHHhcCCCCCCEEEE-cCCCCcccHHHHHHCC-----------cEEEEEcCCCCC---------CCCH---HHHHHHHH
Q 001989 670 AYHKARGDHHRNVCII-PVSAHGTNPATAAMCG-----------MKIVSVGTDAKG---------NINI---EELRKAAE 725 (985)
Q Consensus 670 ~~~~~~g~~~~~~IIv-~~~~Hg~~~~~a~~~G-----------~~vv~v~~d~~g---------~iD~---e~L~~~i~ 725 (985)
.|. ++++|+. ...+||.+..+....+ .....++..... ..+. +.+...+.
T Consensus 122 ~~t------~r~~i~~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (431)
T d1zoda1 122 LVT------GKYEIVGFAQSWHGMTGAAASATYSAGRKGVGPAAVGSFAIPAPFTYRPRFERNGAYDYLAELDYAFDLID 195 (431)
T ss_dssp HHH------TCCEEEEETTCCCCSSHHHHHTCCSSCCSSSCCCCTTEEEECCCCTTSCCCEETTEECHHHHHHHHHHHHH
T ss_pred Hhc------CCcceeecccccccccchhhcccccccccccCCcccCceeeeeecccccccccccchhhhhhHHHHHHHHH
Confidence 773 3556665 7789998876643211 122333321110 1123 33333333
Q ss_pred h-cCCCEEEEEEEcC-CCccccccC---HHHHHHHHHHcCCEEEEEccccccccCCCCCCccC--------CcEEEeCCc
Q 001989 726 A-NRDNLSTLMVTYP-STHGVYEEG---IDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIG--------ADVCHLNLH 792 (985)
Q Consensus 726 ~-~~~~t~~Vvv~~p-n~~G~i~~d---i~eI~~la~~~galliVD~a~~~~~~~l~~pg~~g--------~Di~~~s~h 792 (985)
+ ..+++++|+++-- ..-|.+.+| +++|.++|+++|+++|+|+++ .|+.+.|.++ +|+++++
T Consensus 196 ~~~~~~iAavi~EPi~g~~G~~~~~~~yl~~lr~lc~~~gillI~DEV~----tG~gRtG~~~~~~~~gv~PDi~~~g-- 269 (431)
T d1zoda1 196 RQSSGNLAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQ----TGVGRTGTMFACQRDGVTPDILTLS-- 269 (431)
T ss_dssp HHCCSCEEEEEECSEETTTTCEECCTTHHHHHHHHHHHHTCEEEEECTT----TTTTTTSSSSTHHHHTCCCSEEEEC--
T ss_pred HhccccccceeeccccccCCccCCCHHHHHHHHHHHHhcCceEEecccc----ccccccccccccccCCCCcchhccc--
Confidence 2 3457888888642 234665422 899999999999999999886 4455555443 7999875
Q ss_pred ccccccCCCCCCceEEEEEcccccCcC-CCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHHHHHH
Q 001989 793 KTFCIPHGGGGPGMGPIGVKKHLAPFL-PSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEA 871 (985)
Q Consensus 793 K~l~~p~g~GGPg~G~i~~~~~l~~~l-p~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl~~~ 871 (985)
|.++ +|-|-++++. +++..... .+.. ...+++.|+++.++++.+.+..+..+.+.+
T Consensus 270 K~l~----gG~p~~av~~-~~~~~~~~~~~~~-----------------~~~~T~~g~pl~~aaa~a~l~~i~~~~~~~- 326 (431)
T d1zoda1 270 KTLG----AGLPLAAIVT-SAAIEERAHELGY-----------------LFYTTHVSDPLPAAVGLRVLDVVQRDGLVA- 326 (431)
T ss_dssp HHHH----TTSSCEEEEE-CHHHHHHHHHTTC-----------------CCCCTTTTCHHHHHHHHHHHHHHHHTTHHH-
T ss_pred cccc----cccccceeee-eecchhhhhcccc-----------------cccCCCCCCcchHHHHHHHHHHhhhhhhhH-
Confidence 8774 4556555544 44332211 1100 011234557777888888888887776544
Q ss_pred HHHHHHHHHHHHHHhhc---cCCeee--cCCCCceeeEEEEEe-cCccccCCCCHHHHHHHHHHCCCccCCCCC-CCCCE
Q 001989 872 SKIAILNANYMAKRLEK---HYPILF--RGVNGTVAHEFIVDL-RGLKNTAGIEPEDVAKRLMDYGFHGPTMSW-PVPGT 944 (985)
Q Consensus 872 ~~~~~~~a~~l~~~L~~---g~~l~~--~~~~~~~~~~~iv~~-~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~~-p~~~~ 944 (985)
+..+..+++.+.+.+ .++++. .+. +. +..+.+.. ...+.........+.+.|.++|+..+.+.. +..+.
T Consensus 327 --~~~~~g~~l~~~l~~~~~~~~~i~~vrG~-Gl-m~~ie~~~~~~~~~~~~~~~~~i~~~~~~~Gl~~~~~~~~~~~~~ 402 (431)
T d1zoda1 327 --RANVMGDRLRRGLLDLMERFDCIGDVRGR-GL-LLGVEIVKDRRTKEPADGLGAKITRECMNLGLSMNIVQLPGMGGV 402 (431)
T ss_dssp --HHHHHHHHHHHHHHHHHHHCTTEEEEEEE-TT-EEEEEEEEETTTTEECTTHHHHHHHHHHHTTEECCEECCTTSCCE
T ss_pred --HHHHHHHHHhhhhhhhhhcCCCeEEEeec-ce-EEEEEEecCCcccCccHHHHHHHHHHHHHhCcccCeeeecCCCCE
Confidence 455556666666543 233221 111 21 21121211 100001111256788999999987553322 34589
Q ss_pred EEEeccCCCCHHHHHHHHccCChhHHHHhh
Q 001989 945 LMIEPTESESKSWTGIVMLSSPSEKKLHRL 974 (985)
Q Consensus 945 lris~t~~~t~eeId~~~~~~~l~~~~~~~ 974 (985)
||++|+...|++|||+ ++++|++++++.
T Consensus 403 i~l~Ppl~it~~eid~--~~~~l~~al~~v 430 (431)
T d1zoda1 403 FRIAPPLTVSEDEIDL--GLSLLGQAIERA 430 (431)
T ss_dssp EEECCCTTCCHHHHHH--HHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHH--HHHHHHHHHHHh
Confidence 9999999999999999 889999998763
|
| >d1v72a1 c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Phenylserine aldolase PSALD species: Pseudomonas putida [TaxId: 303]
Probab=99.62 E-value=1.6e-15 Score=165.70 Aligned_cols=288 Identities=16% Similarity=0.115 Sum_probs=169.1
Q ss_pred HHHHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHH---HHHHCCcEEEEEc
Q 001989 632 EMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPA---TAAMCGMKIVSVG 708 (985)
Q Consensus 632 ~~~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~---~a~~~G~~vv~v~ 708 (985)
+.++++++++|+++|.+...+++++|++|+++++.+++ ..++.+++....|..+.. .....+..+..++
T Consensus 38 ~~~~~l~~~la~~~g~~~~v~f~~sGt~An~~a~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (345)
T d1v72a1 38 ELTAQVKRKFCEIFERDVEVFLVPTGTAANALCLSAMT--------PPWGNIYCHPASHINNDECGAPEFFSNGAKLMTV 109 (345)
T ss_dssp HHHHHHHHHHHHHHTSCCEEEEESCHHHHHHHHHHTSC--------CTTEEEEECTTSHHHHSSTTHHHHHTTSCEEEEC
T ss_pred HHHHHHHHHHHHHHCCCcEEEECCchHHHHHHHHHHHH--------hcCCccccccccceeeechhhHHHhcCccccccc
Confidence 34678999999999998766777899988765554332 245667776665544322 2346677787787
Q ss_pred CCCCCCCCHHHHHHHHHhcC-----CCEEEEEEEcCCCccc---cccCHHHHHHHHHHcCCEEEEEccccccccC--CCC
Q 001989 709 TDAKGNINIEELRKAAEANR-----DNLSTLMVTYPSTHGV---YEEGIDEICKIIHDNGGQVYMDGANMNAQVG--LTS 778 (985)
Q Consensus 709 ~d~~g~iD~e~L~~~i~~~~-----~~t~~Vvv~~pn~~G~---i~~di~eI~~la~~~galliVD~a~~~~~~~--l~~ 778 (985)
.+.++..|++++++.+.... +.+.++.+...+..+. ++ +++++.++|+++|+++|+|+++...... ...
T Consensus 110 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 188 (345)
T d1v72a1 110 DGPAAKLDIVRLRERTREKVGDVHTTQPACVSITQATEVGSIYTLD-EIEAIGDVCKSSSLGLHMDGSRFANALVSLGCS 188 (345)
T ss_dssp CCGGGCCCHHHHHHHTTSSTTCTTSCEEEEEEEESSCTTSCCCCHH-HHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCC
T ss_pred ccccccccHHHhhhhhcccccccccccceeeeeeccccccccccch-hhhhHHHHHHhcCceeeecccccceeccccccC
Confidence 77789999999999986321 1234444444444333 34 6889999999999999999998421111 111
Q ss_pred CC----ccCCcEEEeCCcccccccCCCCCCceEEEEEccc-ccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHH
Q 001989 779 PG----YIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKH-LAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALIL 853 (985)
Q Consensus 779 pg----~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~-l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~ 853 (985)
.. ....+.++.+.+|. ++...+.+..... ......... ......... ..
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~-----~~--- 242 (345)
T d1v72a1 189 PAEMTWKAGVDALSFGATKN-------GVLAAEAIVLFNTSLATEMSYRR-----------KRAGHLSSK-----MR--- 242 (345)
T ss_dssp TTTTTGGGTCCEEEECCGGG-------TCSSCEEEEESSGGGHHHHHHHH-----------HHTTCCCSS-----TH---
T ss_pred HHHhhccccccccccCcccc-------ccccccccccchhhhhhhccccc-----------cccccccch-----hh---
Confidence 11 12234444443332 2222333333321 111100000 000001111 11
Q ss_pred HHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhccCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCc
Q 001989 854 PISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFH 933 (985)
Q Consensus 854 ~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~ 933 (985)
.++++....+......+...+...+..++.+.|.+...+...++.. .+.+.++++ .+++++|.++|+.
T Consensus 243 ~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~p~~--~niv~~~~~----------~~~~~~L~~~gi~ 310 (345)
T d1v72a1 243 FLSAQIDAYLTDDLWLRNARKANAAAQRLAQGLEGLGGVEVLGGTE--ANILFCRLD----------SAMIDALLKAGFG 310 (345)
T ss_dssp HHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHTTCTTEEEESCCC--SSEEEEEEC----------HHHHHHHHHTTCB
T ss_pred HHhhhhHHHHHHhhhhhhccchhhHHHHHHHHHHhcCCcEeccCCC--ccEEEEEcC----------HHHHHHHHHcCCC
Confidence 1123334455555556666667777888888887633332222212 233445542 4678899999998
Q ss_pred cCCCCCCCCCEEEEeccCCCCHHHHHHHHccCChhH
Q 001989 934 GPTMSWPVPGTLMIEPTESESKSWTGIVMLSSPSEK 969 (985)
Q Consensus 934 ~~~~~~p~~~~lris~t~~~t~eeId~~~~~~~l~~ 969 (985)
+..... .++.|||+++..+|+||||+ ++++|++
T Consensus 311 v~~~~~-~~~~lR~~~~~~~T~edid~--~le~lr~ 343 (345)
T d1v72a1 311 FYHDRW-GPNVVRFVTSFATTAEDVDH--LLNQVRL 343 (345)
T ss_dssp CBCSSS-STTEEEEECCTTCCHHHHHH--HHHHHHH
T ss_pred ccccCC-CCCEEEEECCCCCCHHHHHH--HHHHHHH
Confidence 754322 25899999999999999999 6677765
|
| >d1cl1a_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine beta-lyase, CBL species: Escherichia coli [TaxId: 562]
Probab=99.62 E-value=6.6e-14 Score=156.12 Aligned_cols=212 Identities=14% Similarity=0.110 Sum_probs=161.4
Q ss_pred HHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCch---hh
Q 001989 215 NFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDLK---DI 291 (985)
Q Consensus 215 e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~~---~l 291 (985)
.+++.+|+|.|.+. +.++++|.+|+.++++++. ++||+||+++..|..+...++.....+|+++.+++.. ++
T Consensus 62 ~le~~la~LEg~~~--a~~~~SGMaAi~~~l~~l~---~~Gd~iv~~~~~Yg~T~~l~~~~l~~~Gi~~~~~d~~d~~~~ 136 (391)
T d1cl1a_ 62 SLQQAMCELEGGAG--CVLFPCGAAAVANSILAFI---EQGDHVLMTNTAYEPSQDFCSKILSKLGVTTSWFDPLIGADI 136 (391)
T ss_dssp HHHHHHHHHHTCSE--EEEESSHHHHHHHHHHHHC---CTTCEEEEETTSCHHHHHHHHHTGGGGTCEEEEECTTCGGGG
T ss_pred HHHHHHHHHhCCcc--EEEeccccceeeehhhccc---CCCCeEEEecccccchhhhhhhcccccccccccccCcccccc
Confidence 36689999999876 7789999999888887763 3899999999999999999998888899999999764 45
Q ss_pred hc-cCCCEeEEEEEcC-CCCeeeccHHHHHHHHHhC--CcEEEEEecCccccCCCCCCcccceEEEecC-ccccccCCCC
Q 001989 292 DY-KSGDVCGVLVQYP-GTEGEVLDYGDFIKNAHAN--GVKVVMATDLLALTILKPPGELGADIVVGSA-QRFGVPMGYG 366 (985)
Q Consensus 292 ~~-l~~~t~~V~v~~p-n~~G~v~di~~I~~~a~~~--galliV~a~~~~lg~l~~~~~~GaDi~v~s~-k~lg~P~~~G 366 (985)
++ ++++|++|++..| |++..+.||++|+++||++ |++++|| +.++-+++..|-++||||++.|. |.+++. |
T Consensus 137 ~~~i~~~t~~i~~EtpsNP~l~v~Di~~i~~~a~~~~~g~~~vVD-nT~atP~~~~Pl~~GaDivvhS~TKy~~Gh---s 212 (391)
T d1cl1a_ 137 VKHLQPNTKIVFLESPGSITMEVHDVPAIVAAVRSVVPDAIIMID-NTWAAGVLFKALDFGIDVSIQAATKYLVGH---S 212 (391)
T ss_dssp GGTCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHCTTCEEEEE-CTTTTTTSSCGGGGTCSEEEEETTTTTTCS---S
T ss_pred ccccccccceeeecccCcccccccccHHHHHHHHhccCCcEEEEe-ccccchhhhcccccccceEEeecchhcccc---c
Confidence 55 7899999999998 8899999999999999774 9999994 67777888899999999999998 888653 2
Q ss_pred CCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcchHHHH
Q 001989 367 GPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTI 446 (985)
Q Consensus 367 GP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i 446 (985)
.--+|.+..++++.+++. ..++..| ... ++. ..|+...|.+-+..+
T Consensus 213 dvlgG~vv~~~~~~~~~~-------------------------~~~~~~G--~~~--~p~-----~a~ll~rgl~TL~lR 258 (391)
T d1cl1a_ 213 DAMIGTAVCNARCWEQLR-------------------------ENAYLMG--QMV--DAD-----TAYITSRGLRTLGVR 258 (391)
T ss_dssp SCCCEEEEECTTTHHHHH-------------------------HHHHHTT--CCC--CHH-----HHHHHHHHHTTHHHH
T ss_pred cccccceeccccccccch-------------------------hhhhccc--ccC--Cch-----hhhhhhccchhHHHH
Confidence 223366666655443320 0011111 110 111 124455566677788
Q ss_pred HHHHHHHHHHHHHHHhcCCCeEE
Q 001989 447 AQRVHGLAGTFALGLKKLGTVEV 469 (985)
Q Consensus 447 ~~~~~~~a~~l~~~L~~~g~~~~ 469 (985)
.++..++|..+++.|++...++-
T Consensus 259 ~~~~~~nA~~vA~~L~~hp~V~~ 281 (391)
T d1cl1a_ 259 LRQHHESSLKVAEWLAEHPQVAR 281 (391)
T ss_dssp HHHHHHHHHHHHHHHHTCTTEEE
T ss_pred HHHHHHHHHHHHHHHHhcccccc
Confidence 88889999999999999854553
|
| >d1y4ia1 c.67.1.3 (A:2-398) Methionine gamma-lyase, MGL {Citrobacter freundii [TaxId: 546]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Citrobacter freundii [TaxId: 546]
Probab=99.61 E-value=2.6e-14 Score=159.08 Aligned_cols=214 Identities=19% Similarity=0.178 Sum_probs=153.5
Q ss_pred HHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHH----HHHCCcEEEEEcC
Q 001989 634 FNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPAT----AAMCGMKIVSVGT 709 (985)
Q Consensus 634 ~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~----a~~~G~~vv~v~~ 709 (985)
...+++.++++-|.+.+ +.+.||..|+.++++++. ++||+||+++..+|..... ....|+++..++.
T Consensus 65 ~~~LE~~la~LEgg~~a-~~~sSGmaAi~~~l~~ll--------~~Gd~vi~~~~~Yg~t~~~~~~~l~~~Gi~~~~vd~ 135 (397)
T d1y4ia1 65 TDALEKKLAVLERGEAG-LATASGISAITTTLLTLC--------QQGDHIVSASAIYGCTHAFLSHSMPKFGINVRFVDA 135 (397)
T ss_dssp HHHHHHHHHHHHTCSEE-EEESSHHHHHHHHHHHHC--------CTTCEEEEESSSCHHHHHHHHTHHHHTTCEEEEECT
T ss_pred HHHHHHHHHHHhCCccc-eeehHHHHHHHHHHhhcc--------CCCCeeeeecccccccchhhhcccCCCceEeeccCC
Confidence 44688999999998765 445678777655555442 4789999988766644333 4568999999986
Q ss_pred CCCCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCccCCcEEE
Q 001989 710 DAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIGADVCH 788 (985)
Q Consensus 710 d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~g~Di~~ 788 (985)
. |++.++++|+ ++|++|+++.| |++.-+. ||++|+++||++|++++||.+. +-..+.+|.++|+||++
T Consensus 136 ~-----d~~~~~~~i~---~~Tklv~~Esp~NP~l~v~-Di~~i~~iA~~~gi~~vvDnT~--atP~~~~Pl~~GaDivi 204 (397)
T d1y4ia1 136 G-----KPEEIRAAMR---PETKVVYIETPANPTLSLV-DIETVAGIAHQQGALLVVDNTF--MSPYCQQPLQLGADIVV 204 (397)
T ss_dssp T-----SHHHHHHHCC---TTEEEEEEESSCTTTCCCC-CHHHHHHHHHHTTCEEEEECTT--TCTTTCCGGGGTCSEEE
T ss_pred C-----CHHHHHHhcC---CCCcEEEecCCcccceeec-ccHHHHHHhhcCCceEEecCcc--cCcccCcchhcCCCEEE
Confidence 4 8999999997 89999999999 5677776 9999999999999999999763 34456789999999999
Q ss_pred eCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHHH
Q 001989 789 LNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGL 868 (985)
Q Consensus 789 ~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl 868 (985)
.|..|+++ |.+-.-+|.++++++......-... .+.++.+.+ + ..+|. ...|-+-+
T Consensus 205 hS~TKyi~---Ghsdvl~G~v~~~~~~~~~~r~~~~-----------~~~~G~~l~-p-------~~a~l--~~rgl~TL 260 (397)
T d1y4ia1 205 HSVTKYIN---GHGDVIGGIIVGKQEFIDQARFVGL-----------KDITGGCMS-P-------FNAWL--TLRGVKTL 260 (397)
T ss_dssp EETTTTTT---CSSCCCCEEEEECHHHHHHHHHTHH-----------HHTTCCCCC-H-------HHHHH--HHHHHTTH
T ss_pred EehhhhcC---CCcceeeeccCCCHHHHHHHHHHHH-----------HhCcCCcCC-H-------HHHHH--HHcCcCcH
Confidence 99999986 2233467888888654432110000 001122222 1 12344 34455667
Q ss_pred HHHHHHHHHHHHHHHHHhhccCC
Q 001989 869 TEASKIAILNANYMAKRLEKHYP 891 (985)
Q Consensus 869 ~~~~~~~~~~a~~l~~~L~~g~~ 891 (985)
.-++++..+++..+++.|++...
T Consensus 261 ~lRm~~~~~nA~~lA~~L~~hp~ 283 (397)
T d1y4ia1 261 GIRMERHCENALKIARFLEGHPS 283 (397)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCTT
T ss_pred HHHHHHHHHHHHHHHHHHHhCCC
Confidence 77889999999999999987443
|
| >d1u08a_ c.67.1.1 (A:) Putative methionine aminotransferase YdbL {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative methionine aminotransferase YdbL species: Escherichia coli [TaxId: 562]
Probab=99.61 E-value=1.2e-14 Score=163.57 Aligned_cols=344 Identities=10% Similarity=0.105 Sum_probs=210.7
Q ss_pred HHHHHHHHHhccccCcccccccccccccCCCcccccccc-ccccccccCCCCchhhhhhHHHHHHHHHHHHHHHhCCCc-
Q 001989 572 ELLRYIHLLQSKELSLCHSMIPLGSCTMKLNATTEMMPV-TWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFDS- 649 (985)
Q Consensus 572 e~~~~l~~l~~~~~~~~~~~~~lG~~t~~~~~~~~~~~~-~~~~f~~~~p~~p~e~~~G~~~~~~e~~~~la~l~G~~~- 649 (985)
-+...|.+++++. +++.|+.|.|.+++......+ ........+-|.| .+|..++.+.+.+++.+.+|.+.
T Consensus 14 ~~~~~~~~~a~~~-----~~i~l~~G~Pd~~~p~~i~~a~~~~~~~~~~~Y~~---~~G~~~LReaia~~~~~~~g~~~~ 85 (382)
T d1u08a_ 14 TIFTQMSALAQQH-----QAINLSQGFPDFDGPRYLQERLAHHVAQGANQYAP---MTGVQALREAIAQKTERLYGYQPD 85 (382)
T ss_dssp CHHHHHHHHHHHT-----TCEECCCSSCSSCCCHHHHHHHHHHHHTTCCSCCC---TTCCHHHHHHHHHHHHHHHSCCCC
T ss_pred cHHHHHHHHhccC-----CCEEccCCCCCCCCCHHHHHHHHHHHhcCCCCCCC---CcCCHHHHHHHHHHHHHHhCCCCC
Confidence 4556777777664 367888888776653332221 0000011233444 57888888888888888888754
Q ss_pred -c-ceecCcH-HHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcCCCC-CCCCHHHHHHHHH
Q 001989 650 -F-SLQPNAG-AAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAK-GNINIEELRKAAE 725 (985)
Q Consensus 650 -~-~~~~~sG-a~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~d~~-g~iD~e~L~~~i~ 725 (985)
. .+..++| .+|...++.++. .+++.|+++++.+..+.......|..++.++.+.+ +.+|++++++++.
T Consensus 86 ~~~~I~vt~G~~~al~~~~~~l~--------~~gd~vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~~~ 157 (382)
T d1u08a_ 86 ADSDITVTAGATEALYAAITALV--------RNGDEVICFDPSYDSYAPAIALSGGIVKRMALQPPHFRVDWQEFAALLS 157 (382)
T ss_dssp TTTTEEEESSHHHHHHHHHHHHC--------CTTCEEEEEESCCTTHHHHHHHTTCEEEEEECCTTTCCCCHHHHHHHCC
T ss_pred CCceEEeccchHHHHHHHHhhcc--------cccceEEEecccccchhhhhhhccccceecccccccccCCHHHHhhhhc
Confidence 2 3555444 445544433331 47889999888777777778889988888887654 6789999999887
Q ss_pred hcCCCEEEEEEEcCC-Cccccc--cCHHHHHHHHHHcCCEEEEEcccccccc-CCCCCC------ccCCcEEEeCCcccc
Q 001989 726 ANRDNLSTLMVTYPS-THGVYE--EGIDEICKIIHDNGGQVYMDGANMNAQV-GLTSPG------YIGADVCHLNLHKTF 795 (985)
Q Consensus 726 ~~~~~t~~Vvv~~pn-~~G~i~--~di~eI~~la~~~galliVD~a~~~~~~-~l~~pg------~~g~Di~~~s~hK~l 795 (985)
++++++++++|| ++|.+. .++++|+++|.+++.+++.|..+..... ....+. ...--+++.|+.|++
T Consensus 158 ---~~~~~i~l~~P~NPtG~v~~~~~~~~l~~~~~~~~~~ii~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~ 234 (382)
T d1u08a_ 158 ---ERTRLVILNTPHNPSATVWQQADFAALWQAIAGHEIFVISDEVYEHINFSQQGHASVLAHPQLRERAVAVSSFGKTY 234 (382)
T ss_dssp ---TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHTTSCCEEEEECTTTTCBCCSSCCCCGGGSHHHHTTEEEEEEHHHHT
T ss_pred ---cCccEEEECCCCcccccccccccchhhhhhhccccceeeeecchhhccccccccccccccccccCcEEEEeeccccc
Confidence 899999999995 689886 2567888888899999999987632111 110010 111237788888988
Q ss_pred cccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHHHHHHHHHH
Q 001989 796 CIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIA 875 (985)
Q Consensus 796 ~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl~~~~~~~ 875 (985)
+.| |.++|++++++++...+.... .....+.+...+ .++..++. .+.+.+.+..+..
T Consensus 235 ~~p----G~RiG~~v~~~~~~~~~~~~~--------------~~~~~~~~~~~q----~a~~~~l~-~~~~~~~~~~~~~ 291 (382)
T d1u08a_ 235 HMT----GWKVGYCVAPAPISAEIRKVH--------------QYLTFSVNTPAQ----LALADMLR-AEPEHYLALPDFY 291 (382)
T ss_dssp TCG----GGCCEEEECCHHHHHHHHHHH--------------HHHTSSCCHHHH----HHHHHHHH-HCTHHHHTHHHHH
T ss_pred cCC----cccchhhhccchhHHHHHhhh--------------cccccccccccc----cccccccc-cchHHHHHHHHHH
Confidence 665 789999998876654332110 001111111112 11222232 3445556666666
Q ss_pred HHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHH-HCCCccCC-CCC---C-CCCEEEEe
Q 001989 876 ILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLM-DYGFHGPT-MSW---P-VPGTLMIE 948 (985)
Q Consensus 876 ~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~-~~Gi~~~~-~~~---p-~~~~lris 948 (985)
.++++.+.+.+.. ++.+ ..+.+.++ +.++++.. .+.+..+++++|. ++|+.+.+ ..| + ..+++|||
T Consensus 292 ~~~~~~l~~~~~~~g~~~--~~p~gg~~--~~~~~~~~---~~~d~~e~~~~ll~e~gV~v~PG~~F~~~~~~~~~~Ris 364 (382)
T d1u08a_ 292 RQKRDILVNALNESRLEI--LPCEGTYF--LLVDYSAV---STLDDVEFCQWLTQEHGVAAIPLSVFCADPFPHKLIRLC 364 (382)
T ss_dssp HHHHHHHHHHTTSSSCEE--CCCCBSSE--EEEECTTT---CCSCHHHHHHHHHHHSCEECEEGGGGCSSCCCSCEEEEE
T ss_pred HhhhhhhhhhhccCCcEE--ecCCceEE--EEEecCCC---CCCCHHHHHHHHHHHCCEEEEcchhhCCCCCCCCEEEEE
Confidence 7777888888765 4433 23334333 34666521 2467888998875 57998642 222 2 24789999
Q ss_pred ccCCCCHHHHHHHHccCChh
Q 001989 949 PTESESKSWTGIVMLSSPSE 968 (985)
Q Consensus 949 ~t~~~t~eeId~~~~~~~l~ 968 (985)
++ .++|+|++ .++.|+
T Consensus 365 ~~--~~~e~l~~--al~RL~ 380 (382)
T d1u08a_ 365 FA--KKESTLLA--AAERLR 380 (382)
T ss_dssp CC--SCHHHHHH--HHHHHT
T ss_pred Ee--CCHHHHHH--HHHHHh
Confidence 85 46787777 444443
|
| >d1v2da_ c.67.1.1 (A:) Glutamine aminotransferase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Glutamine aminotransferase species: Thermus thermophilus [TaxId: 274]
Probab=99.61 E-value=7.2e-14 Score=156.09 Aligned_cols=321 Identities=13% Similarity=0.146 Sum_probs=199.0
Q ss_pred HHHHHHHHHhcCCCccceecCCCCCCCCCcHHHHHHHHhCCccccccCCChhhHhhhHHHHHHHHHHHHHHhcCCCCcce
Q 001989 152 QMIEHMQKLASMNKVYKSFIGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMSNA 231 (985)
Q Consensus 152 e~~~~~~~l~~~n~~~~~~lG~g~y~~~~p~~v~~~i~~~~~~~t~~~pyq~e~sqg~l~~i~e~q~~ia~L~g~~~~~~ 231 (985)
-+..+|.++|++.. .-+ +|.|.-+...|+.+.+++.+.-+-.+.|+|.+ | +.++++.+|+.++.++.++
T Consensus 13 ~~~~~~~~la~~~~-~I~-ls~g~p~~~~p~~i~~al~~~l~~~~~Y~~~~-----G----~~elr~aiA~~~~~~~~~I 81 (368)
T d1v2da_ 13 SIFPRMSGLAQRLG-AVN-LGQGFPSNPPPPFLLEAVRRALGRQDQYAPPA-----G----LPALREALAEEFAVEPESV 81 (368)
T ss_dssp -CHHHHHHHHHHHT-CEE-CCCCSCSSCCCHHHHHHHHHHTTTSCSCCCTT-----C----CHHHHHHHHHHHTSCGGGE
T ss_pred CHHHHHHHHhccCC-CEE-ecCCCCCCCCCHHHHHHHHHHhhcccCCCCCc-----C----CHHHHHHHHhhcccCCcce
Confidence 45556777776542 222 35665444567777655444322245565433 2 2357889999999999999
Q ss_pred eeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeC-----------chhhhc-cCCCEe
Q 001989 232 SLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSD-----------LKDIDY-KSGDVC 299 (985)
Q Consensus 232 sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~-----------~~~l~~-l~~~t~ 299 (985)
.+++|++.++..++.++. +++|.|+++.-.|+.+...++.. |.+++.++ .+++++ +.++++
T Consensus 82 iit~G~~~al~~~~~~l~---~~~d~v~~~~p~~~~~~~~~~~~----g~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~ 154 (368)
T d1v2da_ 82 VVTSGATEALYVLLQSLV---GPGDEVVVLEPFFDVYLPDAFLA----GAKARLVRLDLTPEGFRLDLSALEKALTPRTR 154 (368)
T ss_dssp EEESSHHHHHHHHHHHHC---CTTCEEEEEESCCTTHHHHHHHT----TCEEEEEECEEETTEEECCHHHHHTTCCTTEE
T ss_pred eeccchHHHHHHHhhccc---cccccccccCCcchhhhhHHHhc----CCccceeccccccccccCCHHHHHHhhccCce
Confidence 999999987766665542 37899999999999999887653 44444332 235666 788899
Q ss_pred EEEEEcC-CCCeeecc---HHHHHHHHHhCCcEEEEEecCccccCCCCCC------cccceEEEecC-ccccccCCCCCC
Q 001989 300 GVLVQYP-GTEGEVLD---YGDFIKNAHANGVKVVMATDLLALTILKPPG------ELGADIVVGSA-QRFGVPMGYGGP 368 (985)
Q Consensus 300 ~V~v~~p-n~~G~v~d---i~~I~~~a~~~galliV~a~~~~lg~l~~~~------~~GaDi~v~s~-k~lg~P~~~GGP 368 (985)
++++.+| |.+|.+.+ +++|+++|+++|++++++. .........+. .....+++.+. |+++.| |-
T Consensus 155 ~i~~~~p~NPtG~~~~~~~l~~l~~~a~~~~i~ii~D~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~sk~~~~~----G~ 229 (368)
T d1v2da_ 155 ALLLNTPMNPTGLVFGERELEAIARLARAHDLFLISDE-VYDELYYGERPRRLREFAPERTFTVGSAGKRLEAT----GY 229 (368)
T ss_dssp EEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEC-TTTTCBSSSCCCCHHHHCTTTEEEEEEHHHHTTCG----GG
T ss_pred EEEEcCCCCcccccCCHHHHHHHHHHHHHcCCeeeech-hhhhhcccccccccccccccccceeeccccccccc----cc
Confidence 9999998 78999875 8889999999999999953 33322221111 11233444443 766543 23
Q ss_pred cEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHH-HHHHHHHHHHhCcchHHHHH
Q 001989 369 HAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALL-ANMAAMYAVYHGPEGLKTIA 447 (985)
Q Consensus 369 ~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~-a~~aa~~l~~~g~~Gl~~i~ 447 (985)
-+|++...+++++.+- +.+...+.|++.... +..+++. .....+-++++.
T Consensus 230 R~g~~~~~~~~~~~~~----------------------------~~~~~~~~~~~~~~q~~~~~~l~-~~~~~~~~~~~~ 280 (368)
T d1v2da_ 230 RVGWIVGPKEFMPRLA----------------------------GMRQWTSFSAPTPLQAGVAEALK-LARREGFYEALR 280 (368)
T ss_dssp CCEEEECCTTTHHHHH----------------------------HHHHHHTSSCCHHHHHHHHHHHH-HHHHTTHHHHHH
T ss_pred ccccccccccccchhh----------------------------hhhhccccccccccccccccccc-cccchhhHHHHH
Confidence 4578777666554330 001111222222221 2222221 111133567788
Q ss_pred HHHHHHHHHHHHHHhcCCCeEEcCCCCcceEEEecCCHHHHHHHHHHcCceeeee--------cCCeEEEEeccCCCHHH
Q 001989 448 QRVHGLAGTFALGLKKLGTVEVQGLPFFDTVKVKCADAHAIASAAYKIEMNLRVV--------DSNTVTASFDETTTLED 519 (985)
Q Consensus 448 ~~~~~~a~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~~~L~~~GI~~~~~--------~~~~lris~t~~~t~ed 519 (985)
+...++.+++.+.|++.| +++..+....-+-++.++ .+..+.|.++||.+.+. ..+.+|+|++ +++|+
T Consensus 281 ~~~~~~~~~l~~~l~~~g-~~~~~p~g~~~~~~~l~~-~~~~~ll~~~gI~v~pg~~F~~~~~~~~~iRis~~--~~~e~ 356 (368)
T d1v2da_ 281 EGYRRRRDLLAGGLRAMG-LRVYVPEGTYFLMAELPG-WDAFRLVEEARVALIPASAFYLEDPPKDLFRFAFC--KTEEE 356 (368)
T ss_dssp HHHHHHHHHHHHHHHHTT-CCEECCSBSSEEEEECTT-CCHHHHHHHTCEECEEGGGGCSSSCCTTEEEEECC--SCHHH
T ss_pred HHHHHhhhhhhhhHHhcC-cEEecCCceeEEEEeCCc-cHHHHHHHhCCEEEEechhhCCCCCCCCEEEEEec--CCHHH
Confidence 888899999999999998 877643211123345554 12234577889987431 1478999976 68999
Q ss_pred HHHHHHHHh
Q 001989 520 VDKLFIVFA 528 (985)
Q Consensus 520 Id~li~aL~ 528 (985)
|++.++.|+
T Consensus 357 i~~ai~rL~ 365 (368)
T d1v2da_ 357 LHLALERLG 365 (368)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998886
|
| >d1e5ea_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL1 [TaxId: 5722]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Trichomonas vaginalis, MGL1 [TaxId: 5722]
Probab=99.61 E-value=5.4e-14 Score=156.97 Aligned_cols=213 Identities=18% Similarity=0.172 Sum_probs=160.1
Q ss_pred HHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCch---hh
Q 001989 215 NFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDLK---DI 291 (985)
Q Consensus 215 e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~~---~l 291 (985)
.+++.+|+|.|.+. +..+.+|.+|+.++++++. ++||+|++++..+..+...+......+|+++.++|.. ++
T Consensus 63 ~le~~la~LEg~~~--a~~~sSGmaAi~~~~l~l~---~~gd~vv~~~~~yg~t~~~~~~~~~~~gi~~~~~d~~d~~~~ 137 (394)
T d1e5ea_ 63 NLEGKIAFLEKTEA--CVATSSGMGAIAATVLTIL---KAGDHLISDECLYGCTHALFEHALTKFGIQVDFINTAIPGEV 137 (394)
T ss_dssp HHHHHHHHHHTCSE--EEEESSHHHHHHHHHHHHC---CTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECTTSTTHH
T ss_pred HHHHHHHHHhCCcc--eeeeccchHHHHHHHHhhc---ccccccccccceeehhhHhHHHHhhccceeeeccCCCCHHHH
Confidence 46689999999876 6788999988887777653 3899999999999998888887777899999999874 45
Q ss_pred hc-cCCCEeEEEEEcC-CCCeeeccHHHHHHHHH-hCCcEEEEEecCccccCCCCCCcccceEEEecC-ccccccCCCCC
Q 001989 292 DY-KSGDVCGVLVQYP-GTEGEVLDYGDFIKNAH-ANGVKVVMATDLLALTILKPPGELGADIVVGSA-QRFGVPMGYGG 367 (985)
Q Consensus 292 ~~-l~~~t~~V~v~~p-n~~G~v~di~~I~~~a~-~~galliV~a~~~~lg~l~~~~~~GaDi~v~s~-k~lg~P~~~GG 367 (985)
++ ++++|++|++..| |.+..+.|++++++.++ ++|++++|| +.++-+++..|-++|||||+.|+ |.+++. |-
T Consensus 138 ~~~i~~~t~lv~~Etp~NP~l~v~Di~~~~~~~~~~~g~~vvvD-nT~atP~~~~Pl~~GaDiVvhS~TKy~~Gh---sD 213 (394)
T d1e5ea_ 138 KKHMKPNTKIVYFETPANPTLKIIDMERVCKDAHSQEGVLVIAD-NTFCSPMITNPVDFGVDVVVHSATKYINGH---TD 213 (394)
T ss_dssp HHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHTSTTCEEEEE-CTTTCTTTCCGGGGTCSEEEEETTTTTTCS---SC
T ss_pred HHhhcccccEEEEeccCCcceeeehhhhhhhccccccCeEEEec-CcccCcccCCchhcCCCEEEechhhhcCCC---cc
Confidence 56 8999999999987 89999999999988665 468988884 57777888899999999999998 888753 33
Q ss_pred CcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcchHHHHH
Q 001989 368 PHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIA 447 (985)
Q Consensus 368 P~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i~ 447 (985)
--+|.+.++++..... |....|+.-|. .. ++. ..|+...|.+-+..+.
T Consensus 214 v~~G~v~~~~~~~~~~-----------------------~~~~~~~~~G~--~l--sp~-----~a~ll~rgl~TL~lRm 261 (394)
T d1e5ea_ 214 VVAGLICGKADLLQQI-----------------------RMVGIKDITGS--VI--SPH-----DAWLITRGLSTLNIRM 261 (394)
T ss_dssp CCCEEEEECHHHHHHH-----------------------HHTCCCCCCCC--CC--CHH-----HHHHHHHHHTTHHHHH
T ss_pred cccccccchhhHHHHH-----------------------HHHHHHHhhCC--CC--ChH-----HHHHHHhhchhHHHHH
Confidence 3447777776654321 00001111110 00 122 1234556666777788
Q ss_pred HHHHHHHHHHHHHHhcCCCeE
Q 001989 448 QRVHGLAGTFALGLKKLGTVE 468 (985)
Q Consensus 448 ~~~~~~a~~l~~~L~~~g~~~ 468 (985)
++..++|..+++.|++...++
T Consensus 262 ~r~~~nA~~lA~~L~~hp~V~ 282 (394)
T d1e5ea_ 262 KAESENAMKVAEYLKSHPAVE 282 (394)
T ss_dssp HHHHHHHHHHHHHHHTCTTEE
T ss_pred HHHHHHHHHHHHHHhhcCCcc
Confidence 888999999999999986565
|
| >d2r5ea1 c.67.1.1 (A:12-429) Kynurenine--oxoglutarate transaminase I {Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Kynurenine--oxoglutarate transaminase I species: Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]
Probab=99.61 E-value=7.4e-15 Score=167.33 Aligned_cols=349 Identities=13% Similarity=0.035 Sum_probs=210.4
Q ss_pred HHHHHHHHhccccCcccccccccccccCCCccccccc-----cccccccccCCCCchhhhhhHHHHHHHHHHHHHHHhCC
Q 001989 573 LLRYIHLLQSKELSLCHSMIPLGSCTMKLNATTEMMP-----VTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGF 647 (985)
Q Consensus 573 ~~~~l~~l~~~~~~~~~~~~~lG~~t~~~~~~~~~~~-----~~~~~f~~~~p~~p~e~~~G~~~~~~e~~~~la~l~G~ 647 (985)
+.+++.+++++. ++|.||.|.|.+++..+... +..... .++-|.+ .+|..++.+.+.+++.+.+|.
T Consensus 15 ~~~~~~~~~~~~-----~~I~L~~G~Pd~~~p~~i~eal~~a~~~~~~-~~~~Y~~---~~G~~~lReaiA~~~~~~~g~ 85 (418)
T d2r5ea1 15 VWVEYIQLAAQY-----KPLNLGQGFPDYHAPKYALNALAAAANSPDP-LANQYTR---GFGHPRLVQALSKLYSQLVDR 85 (418)
T ss_dssp HHHHHHHHHHHH-----CCEECSSSCCSSCCCHHHHHHHHHHHTCSCG-GGGSCCC---TTCCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHhcCC-----CCEEccCCCCCCCCCHHHHHHHHHHHhCCCc-cCcCCCC---CCCCHHHHHHHHHHHHHHhCC
Confidence 344555666553 36778888776655332222 111111 1233444 478888888888889888887
Q ss_pred Cc---cceecCcHHH-HHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcCCCC----------C
Q 001989 648 DS---FSLQPNAGAA-GEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAK----------G 713 (985)
Q Consensus 648 ~~---~~~~~~sGa~-a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~d~~----------g 713 (985)
+. ..+..++|++ |... +++.+ ..++++|+++++.+..+...+...|.+++.++++++ .
T Consensus 86 ~~~p~~~I~it~G~~~al~~---~~~~l-----~~~gd~vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~ 157 (418)
T d2r5ea1 86 TINPMTEVLVTVGAYEALYA---TIQGH-----VDEGDEVIIIEPFFDCYEPMVKAAGGIPRFIPLKPNKTGGTISSADW 157 (418)
T ss_dssp CCCTTTSEEEESHHHHHHHH---HHHHH-----CCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECEESCCSSCEEGGGE
T ss_pred CCCccceEEEcCCCchhhhh---hhhhc-----cccccceeccccccchhhHHHHHcCCeEEEEEecccccccchhhhhh
Confidence 53 3455555554 4432 33332 147899999998888888888999999999988543 2
Q ss_pred CCCHHHHHHHHHhcCCCEEEEEEEcCC-Cccccc--cCHHHHHHHHHHcCCEEEEEccccccc-cCCC------CCCccC
Q 001989 714 NINIEELRKAAEANRDNLSTLMVTYPS-THGVYE--EGIDEICKIIHDNGGQVYMDGANMNAQ-VGLT------SPGYIG 783 (985)
Q Consensus 714 ~iD~e~L~~~i~~~~~~t~~Vvv~~pn-~~G~i~--~di~eI~~la~~~galliVD~a~~~~~-~~l~------~pg~~g 783 (985)
..+.+++.+... ++++++++++|| ++|.+. ..+++|+++|+++|++++.|.++.... .+.. .++...
T Consensus 158 ~~~~~~~~~~~~---~~~~~~~i~~p~NPtG~~~s~e~~~~l~~~a~~~~~~iI~De~y~~~~~~~~~~~s~~~~~~~~~ 234 (418)
T d2r5ea1 158 VLDNNELEALFN---EKTKMIIINTPHNPLGKVMDRAELEVVANLCKKWNVLCVSDEVYEHMVFEPFEHIRICTLPGMWE 234 (418)
T ss_dssp ECCHHHHHHHCC---TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTTGG
T ss_pred hhhHHHHhhhhh---ccccceecCCcCccccccccHHHHHHHhhhhhcCCeeeecccchhhhccCCCccccccccccccc
Confidence 477888888776 789999999995 789885 257889999999999999999873211 1100 111122
Q ss_pred CcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHH-
Q 001989 784 ADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAM- 862 (985)
Q Consensus 784 ~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~- 862 (985)
.-+++.|+.|.+++| |.++|++++.+++.+.+.... .......+ + ..+.. +...+..
T Consensus 235 ~~i~~~S~SK~~~~p----GlRiG~~~~~~~~i~~~~~~~------------~~~~~~~~-~-~~q~a----~~~~l~~~ 292 (418)
T d2r5ea1 235 RTITIGSAGKTFSLT----GWKIGWAYGPEALLKNLQMVH------------QNCVYTCA-T-PIQEA----IAVGFETE 292 (418)
T ss_dssp GEEEEEEHHHHTTCG----GGCCEEEESCHHHHHHHHHHH------------TTTTCSCC-H-HHHHH----HHHHHHHH
T ss_pred eeeeeecCCccccCC----Ccccccccccchhhhhhhhcc------------cccccccc-c-chhhh----cccccccc
Confidence 236677888988654 789999998876654331100 00011111 1 11111 1111111
Q ss_pred -----hcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCcc-------ccCCCCHHHHHHHHHH
Q 001989 863 -----MGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLK-------NTAGIEPEDVAKRLMD 929 (985)
Q Consensus 863 -----lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~-------~~~g~~~~~v~~~L~~ 929 (985)
...+-+.+..+....+++++.+.|++ ++.+. .|.+.++ +.++++.+. .....+..++++.|.+
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~g~~~~--~P~gg~f--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~ 368 (418)
T d2r5ea1 293 LKRLKSPECYFNSISGELMAKRDYMASFLAEVGMNPT--VPQGGYF--MVADWSSLDSKVDLTQETDARKDYRFTKWMTK 368 (418)
T ss_dssp HTTTTSTTSHHHHHHHHHHHHHHHHHHHHHHTTCEEE--ECSBSSE--EEEECGGGSTTCCGGGCCCSSHHHHHHHHHHH
T ss_pred ccccccchhhHHHHHHHHHHhhhhHHhhHhhcCCccc--CCCceeE--EEEEcccccccccchhcccccCHHHHHHHHHH
Confidence 11223445555567778889999987 44432 2334444 345554211 1112456788888876
Q ss_pred C-CCccCC-CCCC-------CCCEEEEeccCCCCHHHHHHHHccCChhHHH
Q 001989 930 Y-GFHGPT-MSWP-------VPGTLMIEPTESESKSWTGIVMLSSPSEKKL 971 (985)
Q Consensus 930 ~-Gi~~~~-~~~p-------~~~~lris~t~~~t~eeId~~~~~~~l~~~~ 971 (985)
+ |+.+.+ ..|. ..+++|||+. .++|+|++ .++.|++.+
T Consensus 369 ~~gV~v~PG~~F~~~~~~~~g~~~iRis~~--~~~e~l~~--a~~rl~~~l 415 (418)
T d2r5ea1 369 SVGLQGIPPSAFYSEPNKHLGEDFVRYCFF--KKDENLQK--AAEILRKWK 415 (418)
T ss_dssp HHSEECBCGGGGSCGGGHHHHTTEEEEECC--SCHHHHHH--HHHHHHHHH
T ss_pred HCCEEEeCchhhCCCCCccCCCCEEEEEec--CCHHHHHH--HHHHHHHHH
Confidence 4 987643 2221 2478999984 47888888 666666544
|
| >d2gb3a1 c.67.1.1 (A:4-392) AAT homologue TM1698 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: AAT homologue TM1698 species: Thermotoga maritima [TaxId: 2336]
Probab=99.60 E-value=4.8e-15 Score=167.13 Aligned_cols=333 Identities=13% Similarity=0.106 Sum_probs=199.4
Q ss_pred cccccccccCCCccccccccccccccccCCCCchhhhhhHHHHHHHHHHHHHHHhCCC--ccceecCcHH-HHHHHHHHH
Q 001989 591 MIPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFD--SFSLQPNAGA-AGEYAGLMV 667 (985)
Q Consensus 591 ~~~lG~~t~~~~~~~~~~~~~~~~f~~~~p~~p~e~~~G~~~~~~e~~~~la~l~G~~--~~~~~~~sGa-~a~~a~l~a 667 (985)
++.|+.+.|.+++..+....-.......+.|.+ .+|..++.+.+.+++.+..|.+ ...+..++|+ ++...++.+
T Consensus 30 vi~l~~G~p~~~~p~~~~~al~~~~~~~~~Y~~---~~G~~~LR~aia~~~~~~~g~~~~~~~I~it~G~~~~l~~~~~~ 106 (389)
T d2gb3a1 30 IHHLNIGQPDLKTPEVFFERIYENKPEVVYYSH---SAGIWELREAFASYYKRRQRVDVKPENVLVTNGGSEAILFSFAV 106 (389)
T ss_dssp EEECSSCCCCSCCCTHHHHHHHHTCCSSCCCCC---TTCCHHHHHHHHHHHHHTSCCCCCGGGEEEESHHHHHHHHHHHH
T ss_pred EEECCCCCCCCCCCHHHHHHHHhcCCCCCCCCC---CcCCHHHHHHHHHHHHHhcCCCcccceEEecccccccccccccc
Confidence 577888877665443322211111111223333 4788888888888888877764 3455554454 454333333
Q ss_pred HHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcCCCC-CCCCHHHHHHHHHhcCCCEEEEEEEcC-CCcccc
Q 001989 668 IRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAK-GNINIEELRKAAEANRDNLSTLMVTYP-STHGVY 745 (985)
Q Consensus 668 ir~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~d~~-g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i 745 (985)
+. .+++.|+++.+.+..+...+...|+.++.++.+.+ +..+.+.+...+. ++++++++++| |++|.+
T Consensus 107 l~--------~~gd~V~i~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~nP~NPtG~~ 175 (389)
T d2gb3a1 107 IA--------NPGDEILVLEPFYANYNAFAKIAGVKLIPVTRRMEEGFAIPQNLESFIN---ERTKGIVLSNPCNPTGVV 175 (389)
T ss_dssp HC--------CTTCEEEEEESCCTHHHHHHHHHTCEEEEEECCGGGTSCCCTTGGGGCC---TTEEEEEEESSCTTTCCC
T ss_pred cc--------cCCCeEEEeCCCCccccccccccCccccccccccccccchhhhhhhhcc---cCccEEEeCCCCcccccc
Confidence 21 47789999888777777778889999999988654 4445555555554 78999999999 579987
Q ss_pred c--cCHHHHHHHHHHcCCEEEEEccccccc-cCC-CCC--CccCCcEEEeCCcccccccCCCCCCceEEEEEcccc-cCc
Q 001989 746 E--EGIDEICKIIHDNGGQVYMDGANMNAQ-VGL-TSP--GYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHL-APF 818 (985)
Q Consensus 746 ~--~di~eI~~la~~~galliVD~a~~~~~-~~l-~~p--g~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l-~~~ 818 (985)
- .++++|.++|+++|++++.|.++..-. .+. ... ....-.+++.|+.|.++.| |.++|+++++.+. ...
T Consensus 176 ~s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~v~~s~sK~~~~~----GlRiG~~~~~~~~i~~~ 251 (389)
T d2gb3a1 176 YGKDEMRYLVEIAERHGLFLIVDEVYSEIVFRGEFASALSIESDKVVVIDSVSKKFSAC----GARVGCLITRNEELISH 251 (389)
T ss_dssp CCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCGGGSCCTTEEEEEESTTTTTCG----GGCCEEEECSCHHHHHH
T ss_pred chHHHHHHHHhhcccCCEEEEEeccccccccccccccccccccccccccccccccccCc----ccceeeeeccchhHHHH
Confidence 5 368999999999999999999873111 000 000 1122346677878888654 7889999886543 221
Q ss_pred CCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCC
Q 001989 819 LPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGV 897 (985)
Q Consensus 819 lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~ 897 (985)
..... .+..+++. ....++ ..+....++-+++..+...++++++.+.|++ ++.. ...+
T Consensus 252 ~~~~~---------------~~~~~~~~----~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~-~~~p 310 (389)
T d2gb3a1 252 AMKLA---------------QGRLAPPL----LEQIGS-VGLLNLDDSFFDFVRETYRERVETVLKKLEEHGLKR-FTKP 310 (389)
T ss_dssp HHHHH---------------HHSCCCCH----HHHHHH-HHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHTTCCC-BCCC
T ss_pred Hhhhh---------------hccccccc----cccccc-cccccccchhcccccccccccchhhhhhhhhhcccc-ccCC
Confidence 11000 00111111 111111 1222233445566666778888999999987 3322 2222
Q ss_pred CCceeeEEEEEecCccccCCCCHHHHHHHHHHC------CCccCC-CCC---C--CCCEEEEeccCCCCHHHHHHHHccC
Q 001989 898 NGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDY------GFHGPT-MSW---P--VPGTLMIEPTESESKSWTGIVMLSS 965 (985)
Q Consensus 898 ~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~------Gi~~~~-~~~---p--~~~~lris~t~~~t~eeId~~~~~~ 965 (985)
.+.++ +.++++ ..+..+++++|.++ |+.+.+ ..+ | ..+.+||++. .+++++++ .++
T Consensus 311 ~~g~~--~~~~lp------~~~~~~~~~~ll~e~~l~~~~v~v~pg~~f~~~~~~~~~~iRis~~--~~~~~l~~--a~~ 378 (389)
T d2gb3a1 311 SGAFY--ITAELP------VEDAEEFARWMLTDFNMDGETTMVAPLRGFYLTPGLGKKEIRIACV--LEKDLLSR--AID 378 (389)
T ss_dssp SBSSE--EEEECS------SSCHHHHHHHHHHSCCBTTEEEECEEGGGGCSSTTTTSSEEEEECC--SCHHHHHH--HHH
T ss_pred CceEE--EEEeCC------CCCHHHHHHHHHHhhhhhhCCEEEEeCcccccCCCCCCCEEEEEEc--CCHHHHHH--HHH
Confidence 23333 346665 34788899988765 333211 111 1 2478999975 67888888 677
Q ss_pred ChhHHHHhh
Q 001989 966 PSEKKLHRL 974 (985)
Q Consensus 966 ~l~~~~~~~ 974 (985)
.|++.+++.
T Consensus 379 ~L~~~lk~f 387 (389)
T d2gb3a1 379 VLMEGLKMF 387 (389)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 787777654
|
| >d1pffa_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL2 [TaxId: 5722]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Trichomonas vaginalis, MGL2 [TaxId: 5722]
Probab=99.60 E-value=2.5e-14 Score=156.46 Aligned_cols=272 Identities=18% Similarity=0.148 Sum_probs=185.8
Q ss_pred HHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCchh---hh
Q 001989 216 FQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDLKD---ID 292 (985)
Q Consensus 216 ~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~~~---l~ 292 (985)
+++.+|+|.|.+. +.++++|.+|+.++++++. ++||+||+++..+..+...++.+.+.+|+++.++|..+ ++
T Consensus 3 LE~~la~Leg~~~--a~~~sSGMaAi~~~l~~ll---~~Gd~iv~~~~~Yg~t~~~~~~~l~~~gi~~~~~d~~d~~~~~ 77 (331)
T d1pffa_ 3 LEGKIAKLEHAEA--CAATASGMGAIAASVWTFL---KAGDHLISDDCLYGCTHALFEHQLRKFGVEVDFIDMAVPGNIE 77 (331)
T ss_dssp HHHHHHHHHTCSE--EEEESSHHHHHHHHHHHHC---CTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECTTSTTHHH
T ss_pred HHHHHHHHhCCCe--EEEECCHHHHHHHHHHHHh---CCCCEEEEeCCCchHHHHHHHHHHHhcCeEEEEecccchhhHh
Confidence 5789999999876 6788999999877777652 38999999999999999888877788999999998754 44
Q ss_pred c-cCCCEeEEEEEcC-CCCeeeccHHHHHHHH-HhCCcEEEEEecCccccCCCCCCcccceEEEecC-ccccccCCCCCC
Q 001989 293 Y-KSGDVCGVLVQYP-GTEGEVLDYGDFIKNA-HANGVKVVMATDLLALTILKPPGELGADIVVGSA-QRFGVPMGYGGP 368 (985)
Q Consensus 293 ~-l~~~t~~V~v~~p-n~~G~v~di~~I~~~a-~~~galliV~a~~~~lg~l~~~~~~GaDi~v~s~-k~lg~P~~~GGP 368 (985)
+ ++++|+.|++..| |+...+.|++++++++ |++|++++|| +.++-+++.+|-++||||++.|. |.+++. |.-
T Consensus 78 ~~i~~~t~~i~~Es~~np~~~v~d~~~~~~~~a~~~~~~~vVD-nT~atp~~~~pl~~GaDiVv~S~TKy~~Gh---~d~ 153 (331)
T d1pffa_ 78 KHLKPNTRIVYFETPANPTLKVIDIEDAVKQARKQKDILVIVD-NTFASPILTNPLDLGVDIVVHSATKYINGH---TDV 153 (331)
T ss_dssp HTCCTTEEEEEEESSCTTTCCCCCHHHHHHHHTTSSSCEEEEE-CTTTHHHHCCGGGGTCSEEEEETTTTTSSS---SSC
T ss_pred hhcccccceeeeecccccccccccchhhhhhhhcccCceEEee-ccccccccccccccCCCEEEecchhhcCCC---Ccc
Confidence 4 7899999999886 8899999999999985 6789999994 67777777889999999999998 888752 333
Q ss_pred cEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcchHHHHHH
Q 001989 369 HAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQ 448 (985)
Q Consensus 369 ~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~ 448 (985)
-.|.+.++++...+.. .+..++..|. . .++. ..|+...|.+-+..+.+
T Consensus 154 ~~G~v~~~~~~~~~~~-----------------------~~~~~~~~G~--~--l~p~-----~a~ll~rgl~Tl~~Rm~ 201 (331)
T d1pffa_ 154 VAGLVCSRADIIAKVK-----------------------SQGIKDITGA--I--ISPH-----DAWLITRGTLTLDMRVK 201 (331)
T ss_dssp CCEEEEECHHHHHHHH-----------------------HTCCCCCCCC--C--CCHH-----HHHHHHHHHHHHHHHHH
T ss_pred ccccccccccchhhhh-----------------------hhhhhhccCC--C--CCHH-----HHHHHHHHHHHHHHHHH
Confidence 3467777765432210 0000111111 0 0111 12233444455666778
Q ss_pred HHHHHHHHHHHHHhcCCCeE-EcCC-----CC-----------cceEEEecCCHHHHHHHHHHcCc-----eee------
Q 001989 449 RVHGLAGTFALGLKKLGTVE-VQGL-----PF-----------FDTVKVKCADAHAIASAAYKIEM-----NLR------ 500 (985)
Q Consensus 449 ~~~~~a~~l~~~L~~~g~~~-~~~~-----~~-----------~~~~~~~~~~~~~v~~~L~~~GI-----~~~------ 500 (985)
+..++|..+++.|++...++ +.-+ |. ...++|...+.++..+.+..-.+ .+.
T Consensus 202 ~~~~nA~~lA~~L~~hp~V~~V~yPgl~s~p~~~~~~~~~~~~g~l~sf~l~~~~~~~~f~d~l~lf~~~~SlG~~~SLi 281 (331)
T d1pffa_ 202 RAAENAQKVAEFLHEHKAVKKVYYPGLPDHPGHEIAKKQMKMFGSMIAFDVDGLEKAKKVLDNCHVVSLAVSLGGPESLI 281 (331)
T ss_dssp HHHHHHHHHHHHHHHCTTCCCEECTTSTTSTTHHHHHHHCSSCCSEEEEECSSHHHHHHHHHTCSSSEECSSCCSSSCEE
T ss_pred HHHHHHHHHHHhhhhCCcEEeeccccccCccHHHHHhhcccccCcccceeeccHHHHHHHHHhCCcceecccCCCCceeE
Confidence 88899999999999875353 3211 11 23477777663333333332222 110
Q ss_pred ---------e----------ecCCeEEEEeccCCCHHHHHHHHHHHh
Q 001989 501 ---------V----------VDSNTVTASFDETTTLEDVDKLFIVFA 528 (985)
Q Consensus 501 ---------~----------~~~~~lris~t~~~t~edId~li~aL~ 528 (985)
. +.++.+|+|++.-+.++=|+.|-++|.
T Consensus 282 ~~p~~~~h~~~~~e~~~~~Gi~~~liRlsvGlE~~~DLi~Dl~~AL~ 328 (331)
T d1pffa_ 282 QHPASMTHAGVPKEEREAAGLTDNLIRLSVGCENVQDIIDDLKQALD 328 (331)
T ss_dssp ECHHHHTSTTSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHH
T ss_pred eCccccccccCCHHHHHhcCCCcCeEEEEeeeCCHHHHHHHHHHHHH
Confidence 0 124679999998665555666666665
|
| >d1ohwa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.60 E-value=3e-14 Score=163.98 Aligned_cols=287 Identities=15% Similarity=0.114 Sum_probs=176.2
Q ss_pred HHHHHHHHHhCCCc-cceecCcHHHHHHHHHHHHHHHHHhcC--------------------CCCCCEEEE-cCCCCccc
Q 001989 636 NLGEWLCTITGFDS-FSLQPNAGAAGEYAGLMVIRAYHKARG--------------------DHHRNVCII-PVSAHGTN 693 (985)
Q Consensus 636 e~~~~la~l~G~~~-~~~~~~sGa~a~~a~l~air~~~~~~g--------------------~~~~~~IIv-~~~~Hg~~ 693 (985)
++.+.+.++.+.+. ..++.+||++|++++++++|.|...++ ..++.+||. ..++||..
T Consensus 104 ~lae~l~~~~~~~~~~v~f~~sGseAve~Aik~Ar~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ii~~~~syHG~t 183 (461)
T d1ohwa_ 104 KLRESLLSVAPKGMSQLITMACGSCSNENAFKTIFMWYRSKERGQSAFSKEELETCMINQAPGCPDYSILSFMGAFHGRT 183 (461)
T ss_dssp HHHHTGGGGCCTTCCEEEEESSHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHTTCTTTSCCCEEEEETTCCCCSS
T ss_pred HHHHHHHhhhccCcceeeeecchhhhhHHHHHHHHHHhhhcccCcccccchhhhhhhhccccCCCCceEEEecCCcCCCC
Confidence 44455555444332 246779999999999999988754321 023456775 77899987
Q ss_pred HHHHHHCCc-----------EEEEEcCCCC-C-------------CCCHHHHHHHHH---hcCCCEEEEEEEcC-CCccc
Q 001989 694 PATAAMCGM-----------KIVSVGTDAK-G-------------NINIEELRKAAE---ANRDNLSTLMVTYP-STHGV 744 (985)
Q Consensus 694 ~~~a~~~G~-----------~vv~v~~d~~-g-------------~iD~e~L~~~i~---~~~~~t~~Vvv~~p-n~~G~ 744 (985)
..+....|- .....+.... . ..+.+++++.+. .+.+++++|+++-- ...|+
T Consensus 184 ~~a~s~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iAavivEPi~g~~G~ 263 (461)
T d1ohwa_ 184 MGCLATTHSKAIHKIDIPSFDWPIAPFPRLKYPLEEFVKENQQEEARCLEEVEDLIVKYRKKKKTVAGIIVEPIQSEGGD 263 (461)
T ss_dssp HHHHHTCCSCHHHHTTCCCCCCCEECCCCCCSSGGGCHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECSSBCTTTC
T ss_pred cccccccCCcccccccccccCCcccccccccccccccccccchhhhhhHHHHHHHHHHHHhCCCccceeeeccccccccc
Confidence 666543221 1111221110 0 123455565553 34567888888653 34566
Q ss_pred cccC---HHHHHHHHHHcCCEEEEEccccccccCCCCCCcc------C----CcEEEeCCcccccccCCCCCCceEEEEE
Q 001989 745 YEEG---IDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYI------G----ADVCHLNLHKTFCIPHGGGGPGMGPIGV 811 (985)
Q Consensus 745 i~~d---i~eI~~la~~~galliVD~a~~~~~~~l~~pg~~------g----~Di~~~s~hK~l~~p~g~GGPg~G~i~~ 811 (985)
+.+| +++|.++|+++|+++|+|+++ .|+.+.|.+ | +|+++++ |.++ + |++..
T Consensus 264 ~~~~~~fl~~lr~lc~~~gillI~DEV~----tG~gRtG~~~~~e~~gi~~~PDiv~~g--K~l~----~-----g~~~~ 328 (461)
T d1ohwa_ 264 NHASDDFFRKLRDISRKHGCAFLVDEVQ----TGGGSTGKFWAHEHWGLDDPADVMTFS--KKMM----T-----GGFFH 328 (461)
T ss_dssp BCCCHHHHHHHHHHHHHTTCEEEEECTT----TCSSTTSSSSGGGGGCCSSCCSEEEEC--GGGS----S-----EEEEE
T ss_pred cCchhhHHHHHHHHHHhhCcceeccccc----cccccccccccccccccccCchhhhhh--hccc----c-----ccccc
Confidence 6433 899999999999999999887 334444432 2 6888764 6652 1 33333
Q ss_pred cccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhcc--
Q 001989 812 KKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKH-- 889 (985)
Q Consensus 812 ~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~g-- 889 (985)
+..+....+. ...+++.|+++.++++.+.|..+..+++. ++..+..++|.++|++.
T Consensus 329 ~~~~~~~~~~-------------------~~~~T~~g~p~~~aaa~a~l~~i~~~~l~---~~~~~~g~~l~~~l~~l~~ 386 (461)
T d1ohwa_ 329 KEEFRPNAPY-------------------RIFNTWLGDPSKNLLLAEVINIIKREDLL---SNAAHAGKVLLTGLLDLQA 386 (461)
T ss_dssp CGGGSCSSTT-------------------SSCCSCSSCHHHHHHHHHHHHHHHHTTHH---HHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccc-------------------ccccccccccccchhhcccchhhhhhhHH---HHHHHHHHHHHHHHHHHHh
Confidence 4333322211 11223455677788888899988776554 35566778888887651
Q ss_pred -C-Cee--ecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCCCCCCCEEEEeccCCCCHHHHHHHHccC
Q 001989 890 -Y-PIL--FRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKSWTGIVMLSS 965 (985)
Q Consensus 890 -~-~l~--~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~~p~~~~lris~t~~~t~eeId~~~~~~ 965 (985)
+ .++ +.+. +. + +.+.+.. .....++.+.|.++|+++.... +++||+.|+...|++|||. +++
T Consensus 387 ~~~~~i~~vrG~-Gl-~--~~ie~~~-----~~~~~~i~~~~~~~Gll~~~~~---~~~ir~~PpL~it~~eid~--~~~ 452 (461)
T d1ohwa_ 387 RYPQFISRVRGR-GT-F--CSFDTPD-----ESIRNKLISIARNKGVMLGGCG---DKSIRFRPTLVFRDHHAHL--FLN 452 (461)
T ss_dssp HCTTTCEEEEEE-TT-E--EEEECSS-----HHHHHHHHHHHHHTTEECEEET---TTEEECCCCTTCCHHHHHH--HHH
T ss_pred hCCCceEEeeee-eE-E--EEEEcCC-----HHHHHHHHHHHHHCCeEEeeCC---CCEEEEeCCcCCCHHHHHH--HHH
Confidence 2 221 1111 11 1 2344431 1234678899999999875543 4799999999999999999 889
Q ss_pred ChhHHHHh
Q 001989 966 PSEKKLHR 973 (985)
Q Consensus 966 ~l~~~~~~ 973 (985)
+|++++.+
T Consensus 453 ~l~~~l~e 460 (461)
T d1ohwa_ 453 IFSDILAD 460 (461)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHhc
Confidence 99988864
|
| >d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tryptophan indol-lyase (tryptophanase) species: Escherichia coli [TaxId: 562]
Probab=99.60 E-value=3.4e-15 Score=172.71 Aligned_cols=315 Identities=15% Similarity=0.088 Sum_probs=188.8
Q ss_pred HHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhc-CCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcCCC-
Q 001989 634 FNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKAR-GDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDA- 711 (985)
Q Consensus 634 ~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~-g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~d~- 711 (985)
+.++++.+++++|.+.+ ++++||++|++.+++++..+.... ...+...++.+...|++........|..++.++.+.
T Consensus 76 ~~~le~~~a~l~G~~~~-~~~~sGt~A~~~a~~~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~G~~~~~~~~~~~ 154 (467)
T d2v1pa1 76 YYALAESVKNIFGYQYT-IPTHQGRGAEQIYIPVLIKKREQEKGLDRSKMVAFSNYFFDTTQGHSQINGCTVRNVYIKEA 154 (467)
T ss_dssp HHHHHHHHHHHTCCSEE-EEECSSTTTHHHHHHHHHHHHHHHHCCCTTTCEEEESSCCHHHHHHHHHTTCEEEECBCTTT
T ss_pred HHHHHHHHHHHHCCCEE-EECCCCHHHHHHHHHHHhhccceEecCCCCcEEEEecccccccHHHHHHcCCeeeecccccc
Confidence 56788999999999875 667899999988888877654322 112334466676667777777889999998887653
Q ss_pred ---------CCCCCHHHHHHHHHhcC-CCEEEEEEEcCC-Cc-cccc--cCHHHHHHHHHHcCCEEEEEccccccccCC-
Q 001989 712 ---------KGNINIEELRKAAEANR-DNLSTLMVTYPS-TH-GVYE--EGIDEICKIIHDNGGQVYMDGANMNAQVGL- 776 (985)
Q Consensus 712 ---------~g~iD~e~L~~~i~~~~-~~t~~Vvv~~pn-~~-G~i~--~di~eI~~la~~~galliVD~a~~~~~~~l- 776 (985)
.+.+|+++|+++++.+. +.+++++++..+ .. |.+. .++++|+++|+++|++||+|+|+..+....
T Consensus 155 ~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~i~~e~~~~~~gg~~~~~~~l~~i~~ia~~~g~~l~~D~a~~~~~~~~~ 234 (467)
T d2v1pa1 155 FDTGVRYDFKGNFDLEGLERGIEEVGPNNVPYIVATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVMDSARFAENAYFI 234 (467)
T ss_dssp TCTTSCCTTTTCBCHHHHHHHHHHHCGGGCCCEEEESSBCGGGCBCCCHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHH
T ss_pred cccccccccccCCCHHHHHHHHhhcCccccceeeecceeeccccccCCHHHHHHHHHHHHHcCCEEEEechhhhcccccc
Confidence 35799999999997543 457778887764 33 3331 268999999999999999999985322110
Q ss_pred -C-CCC-------------ccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCC--CCccccCCCCCCCCCCCCC
Q 001989 777 -T-SPG-------------YIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLP--SHPVVSTGGIPAPEKSQPL 839 (985)
Q Consensus 777 -~-~pg-------------~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp--~~~~g~~~~~~~~~~~~~~ 839 (985)
. ..+ .-.+|+++++.||.+ ++|.+|+++.+++...... .+..+... . ..
T Consensus 235 ~~~~~~~~~~~~~~i~~~~~~~~d~~s~s~~K~~------~~~~gg~i~~~~~~~~~~~~~~~~~~~~~-------~-~~ 300 (467)
T d2v1pa1 235 KQREAEYKDWTIEQITRETYKYADMLAMSAKKDA------MVPMGGLLCMKDDSFFDVYTECRTLCVVQ-------E-GF 300 (467)
T ss_dssp HHHCGGGTTSCHHHHHHHHGGGCSEEEEESSSTT------CCSSCEEEEECSGGGHHHHHHHHHHHHHT-------T-SS
T ss_pred ccccccccCCcccccchhhcccCCEEEecCCCCC------CCCCceeEEecchhhhhHHHhhccccccc-------c-cC
Confidence 0 000 013799999999976 5677788888764331110 00000000 0 00
Q ss_pred CCCCCcchhhhHHHHHHHHH-HHHhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCcc---c
Q 001989 840 GTIAAAPWGSALILPISYTY-IAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLK---N 914 (985)
Q Consensus 840 ~~i~s~~~g~~~~~~~a~a~-l~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~---~ 914 (985)
.. ..+.+.....+.+. +.... ..+..++..++++||+++|++ +..+.... .+.+.++...+. .
T Consensus 301 ~~----~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~l~~~L~~~~~~v~~~~-----~~~~~~~~~~~~~~~~ 368 (467)
T d2v1pa1 301 PT----YGGLEGGAMERLAVGLYDGM---NLDWLAYRIAQVQYLVDGLEEIGVVCQQAG-----GHAAFVDAGKLLPHIP 368 (467)
T ss_dssp CC----CCCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHHHHHTTCCEEEEC-----SSCEEEEHHHHSTTSC
T ss_pred cc----hhhhHHHHHHHHHHHhHHhh---hHHHHHHHHHHHHHHHHHHHhcCCcccCCC-----ccceeecchhhcCCcc
Confidence 00 01122222222222 22111 134455667889999999987 44432211 112223221110 0
Q ss_pred cCCCCHH-HHHHHHHHCCCccCC--------------CCCCCCCEEEEecc-CCCCHHHHHHHHccCChhHHHHhhccC
Q 001989 915 TAGIEPE-DVAKRLMDYGFHGPT--------------MSWPVPGTLMIEPT-ESESKSWTGIVMLSSPSEKKLHRLKMG 977 (985)
Q Consensus 915 ~~g~~~~-~v~~~L~~~Gi~~~~--------------~~~p~~~~lris~t-~~~t~eeId~~~~~~~l~~~~~~~~~~ 977 (985)
....... .+.+.+.+.||.+.. ..++..+.+|++++ ...|+||||+ ++++|++++++.+.-
T Consensus 369 ~~~~~~~~~~~~ll~~~Gi~~~~~g~~~~~~~~~~~~~~~~~~~~vRlaip~~~~T~eeiD~--vv~~l~~v~~~~~~i 445 (467)
T d2v1pa1 369 ADQFPAQALACELYKVAGIRAVEIGSFLLGRDPKTGKQLPCPAELLRLTIPRATYTQTHMDF--IIEAFKHVKENAANI 445 (467)
T ss_dssp GGGCHHHHHHHHHHHHHCEECEEESHHHHCBCTTTCSBCCCSCCEEEECCCTTTCCHHHHHH--HHHHHHHHHHTGGGC
T ss_pred hhhhhhHHHHHHHHHHcCCeeecccccccccccccCCccCCCcceEEEecCCCCCCHHHHHH--HHHHHHHHHHHHHhc
Confidence 0011122 344555667875321 11234578999875 5679999999 889999998865543
|
| >d1gc0a_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Pseudomonas putida [TaxId: 303]
Probab=99.60 E-value=1.3e-14 Score=161.40 Aligned_cols=213 Identities=18% Similarity=0.195 Sum_probs=152.8
Q ss_pred HHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHH----HHHCCcEEEEEcC
Q 001989 634 FNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPAT----AAMCGMKIVSVGT 709 (985)
Q Consensus 634 ~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~----a~~~G~~vv~v~~ 709 (985)
...+++.++++-|.+.+. .+.||..|+-++++++. ++||+||+++..+|..... ....|+++.+++.
T Consensus 61 ~~~LE~~la~LEg~~~a~-~~~SGmaAi~~~l~~l~--------~~Gd~vl~~~~~Yg~t~~l~~~~~~~~Gi~~~~~d~ 131 (392)
T d1gc0a_ 61 LNLLEARMASLEGGEAGL-ALASGMGAITSTLWTLL--------RPGDEVLLGNTLYGCTFAFLHHGIGEFGVKLRHVDM 131 (392)
T ss_dssp HHHHHHHHHHHHTCSEEE-EESSHHHHHHHHHHHHC--------CTTCEEEEESSCCSHHHHHHHHTGGGGTCEEEEECT
T ss_pred HHHHHHHHHHHhCCccee-ehhhHHHHHHHHHHhhc--------cCCCeeecccccchhhhhhhhhhhccCCcccccCCc
Confidence 447888999999987654 45677776655555442 4789999977666544333 3457999999986
Q ss_pred CCCCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCccCCcEEE
Q 001989 710 DAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIGADVCH 788 (985)
Q Consensus 710 d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~g~Di~~ 788 (985)
. |+++++++++ ++|++|+++.| |++.-+. ||++|+++||++|++++||.+. +-..+.+|.++|+|+++
T Consensus 132 ~-----d~~~~~~ai~---~~t~lv~~Esp~NP~l~v~-Di~~i~~ia~~~g~~~vvDnT~--atP~~~~Pl~~GaDivi 200 (392)
T d1gc0a_ 132 A-----DLQALEAAMT---PATRVIYFESPANPNMHMA-DIAGVAKIARKHGATVVVDNTY--CTPYLQRPLELGADLVV 200 (392)
T ss_dssp T-----CHHHHHHHCC---TTEEEEEEESSCTTTCCCC-CHHHHHHHHGGGTCEEEEECTT--THHHHCCGGGGTCSEEE
T ss_pred c-----CHHHHHHhCC---CCCeEEEecccccceeeec-chHHHHHHHHhcCCEEEEecCc--cCccccChHHhCCCEEE
Confidence 4 8999999998 89999999998 5788787 9999999999999999999764 33445789999999999
Q ss_pred eCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHHH
Q 001989 789 LNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGL 868 (985)
Q Consensus 789 ~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl 868 (985)
.|..|+++ |.+-.-+|.++++++....+.-... + +.++.+.+ + ..+| +...|-+.+
T Consensus 201 hS~TKyi~---Ghsd~~~G~v~~~~~~~~~~r~~~~----------~-~~~G~~~~-----p---~da~--ll~rgl~TL 256 (392)
T d1gc0a_ 201 HSATKYLS---GHGDITAGIVVGSQALVDRIRLQGL----------K-DMTGAVLS-----P---HDAA--LLMRGIKTL 256 (392)
T ss_dssp EETTTTTT---CSSSCCCEEEEECHHHHHHHHHTHH----------H-HHTCCCCC-----H---HHHH--HHHHHHTTH
T ss_pred Eecceeec---CCcccccccccchhHHHHHHHHHHH----------H-HccCCcCC-----h---hhHH--HHHhccccH
Confidence 99999985 2223467788888655432210000 0 01122222 1 1234 444556678
Q ss_pred HHHHHHHHHHHHHHHHHhhccC
Q 001989 869 TEASKIAILNANYMAKRLEKHY 890 (985)
Q Consensus 869 ~~~~~~~~~~a~~l~~~L~~g~ 890 (985)
..++++..+++..+++.|++..
T Consensus 257 ~lRm~~~~~nA~~lA~~L~~hp 278 (392)
T d1gc0a_ 257 NLRMDRHCANAQVLAEFLARQP 278 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCT
T ss_pred HHHHHHHHHHHHHHHHHHHhCC
Confidence 8889999999999999998743
|
| >d1wsta1 c.67.1.1 (A:13-415) Multiple substrate aminotransferase, MSAT {Thermococcus profundus [TaxId: 49899]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Multiple substrate aminotransferase, MSAT species: Thermococcus profundus [TaxId: 49899]
Probab=99.59 E-value=5.8e-15 Score=167.24 Aligned_cols=306 Identities=13% Similarity=0.130 Sum_probs=182.9
Q ss_pred hhhHHHHHHHHHHHHHHHhCCCc--cceecCcH-HHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcE
Q 001989 627 AQGYQEMFNNLGEWLCTITGFDS--FSLQPNAG-AAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMK 703 (985)
Q Consensus 627 ~~G~~~~~~e~~~~la~l~G~~~--~~~~~~sG-a~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~ 703 (985)
.+|..++.+.+.+++.+.+|.+. .++..++| +++...+ ++.+ ..++++|+++++.|..+...+...|.+
T Consensus 70 ~~G~~~lR~aia~~l~~~~g~~~~~~~I~it~G~~~al~~~---~~~l-----~~~gd~v~~~~P~y~~~~~~~~~~g~~ 141 (403)
T d1wsta1 70 TKGFTPLRLALARWMEKRYDIPMSKVEIMTVAGSQQALDLI---GRVF-----LNPGDPIVVEAPTYLAAIQAFKYYDPE 141 (403)
T ss_dssp SSCCHHHHHHHHHHHHHHHCCCCTTCEEEEESSHHHHHHHH---HHHH-----CCTTCEEEEEESCCHHHHHHHHTTCCE
T ss_pred CcCCHHHHHHHHHHHHHHhCCCCChHHeeecccchHHHHHH---HHHH-----hhcCCccccCCCcchhhhHHHhhcccc
Confidence 47877777777788877777643 44544444 4454333 3332 147889999998777777778899999
Q ss_pred EEEEcCCCCCCC--CH-HHHHHHHHhcCCCEEEEEEEcC-CCccccc--cCHHHHHHHHHHcCCEEEEEcccccc-ccC-
Q 001989 704 IVSVGTDAKGNI--NI-EELRKAAEANRDNLSTLMVTYP-STHGVYE--EGIDEICKIIHDNGGQVYMDGANMNA-QVG- 775 (985)
Q Consensus 704 vv~v~~d~~g~i--D~-e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~--~di~eI~~la~~~galliVD~a~~~~-~~~- 775 (985)
++.|+.+.++.- +. +..++...+.++.+.++++.+| |++|.+. .++++|+++|+++|++++.|.++..- ..+
T Consensus 142 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~NPtG~~~s~~~l~~i~~~a~~~~~~li~De~y~~l~~~~~ 221 (403)
T d1wsta1 142 FISIPLDDKGMRVDLLEEKLEELRKQGKRVKIVYTVSTFQNPAGVTMSVDRRKKLLELANEYDFLIVEDGPYSELRYSGE 221 (403)
T ss_dssp EEEEEEETTEECHHHHHHHHHHHHHTTCCCCEEEECCSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSC
T ss_pred ceeEeecccCCccccccccchhhhhccccccccccccccCCCCCccCCHHHHHHHHHHHHhcCceeccccchhheecCCC
Confidence 999998654321 11 2222233333345667777777 5789875 35788999999999999999987311 111
Q ss_pred ----CCCCCccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhH
Q 001989 776 ----LTSPGYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSAL 851 (985)
Q Consensus 776 ----l~~pg~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~ 851 (985)
+......+..+++.|++|+++ | |.++|++++++++...+..... ....+.+...+..
T Consensus 222 ~~~~~~~~~~~~~~i~~~S~SK~~~-~----G~RiG~~i~~~~~i~~~~~~~~--------------~~~~~~~~~~~~~ 282 (403)
T d1wsta1 222 PTPPIKHFDDYGRVIYLGTFSKILA-P----GFRIGWVAAHPHLIRKMEIAKQ--------------SIDLCTNTFGQAI 282 (403)
T ss_dssp CCCCGGGGCSSSCEEEEEESTTTTC-G----GGCCEEEEECHHHHHHHHHHHH--------------HHHSSCCHHHHHH
T ss_pred CCCcccccCCCCcEEEEccccceec-C----cccccccccchHHHHHHHHHHh--------------hhccccccchhhh
Confidence 111123455688889999884 3 6789999998776543321100 0001111111111
Q ss_pred HHHHHHHHHHHh-cHHHHHHHHHHHHHHHHHHHHHhhcc--CCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHH
Q 001989 852 ILPISYTYIAMM-GSKGLTEASKIAILNANYMAKRLEKH--YPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLM 928 (985)
Q Consensus 852 ~~~~a~a~l~~l-g~eGl~~~~~~~~~~a~~l~~~L~~g--~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~ 928 (985)
. .+.+... ..+.+.+..+....+.+.+.+.|.+. ..+.+..+.+..+ +.++++ .+.+...+++.|.
T Consensus 283 --~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~p~gg~~--~~~~~~-----~~~~~~~~~~~l~ 351 (403)
T d1wsta1 283 --A--WKYVENGYLDEHIPKIIEFYKPRRDAMLEALEEYMPEGVEWTKPEGGMF--VRVTLP-----EGIDTKLMMERAV 351 (403)
T ss_dssp --H--HHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEECCCSBSSE--EEEECC-----TTCCTTTTHHHHH
T ss_pred --H--HhhhhccccchhHHHHHHHHHHHHHHHHHHHHhhccCCeEEeCCCceeE--EEEECC-----CCCCHHHHHHHHH
Confidence 1 1111111 12233444455566667777777652 2233333333333 346665 3567788999999
Q ss_pred HCCCccCC-CCC----CCCCEEEEeccCCCCHHHHHHHHccCChhHHHHh
Q 001989 929 DYGFHGPT-MSW----PVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHR 973 (985)
Q Consensus 929 ~~Gi~~~~-~~~----p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~ 973 (985)
++||.+.+ ..| ..++++||+++. .++++|++ .++.|++++++
T Consensus 352 ~~gV~v~pg~~f~~~~~~~~~iRi~~~~-~~~~~l~~--al~rl~~~l~~ 398 (403)
T d1wsta1 352 AKGVAYVPGEAFFVHRDKKNTMRLNFTY-VPEETIRE--GVRRLAETIKE 398 (403)
T ss_dssp HTTEECEEGGGGSTTCCCCSEEEEECSS-SCHHHHHH--HHHHHHHHHHH
T ss_pred HCCEEEEechhhcCCCCCCCEEEEEecC-CCHHHHHH--HHHHHHHHHHH
Confidence 99998632 122 135799999854 47888888 66777777764
|
| >d1m7ya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Apple (Malus domestica) [TaxId: 3750]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) species: Apple (Malus domestica) [TaxId: 3750]
Probab=99.59 E-value=3.2e-14 Score=162.65 Aligned_cols=311 Identities=15% Similarity=0.138 Sum_probs=185.3
Q ss_pred hhhHHHHHHHHHHHHHHHhC----CCccceecCcHH-HHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHH-HC
Q 001989 627 AQGYQEMFNNLGEWLCTITG----FDSFSLQPNAGA-AGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAA-MC 700 (985)
Q Consensus 627 ~~G~~~~~~e~~~~la~l~G----~~~~~~~~~sGa-~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~-~~ 700 (985)
.+|..++.+.+.+++.+.+| .++.++..++|+ +|...++. .+ ..+||+|+++++.|+.+...+. ..
T Consensus 83 ~~G~~~LR~aiA~~l~~~~~~~~~~~pe~I~it~G~~~al~~~~~---~l-----~~pGd~Vlv~~P~y~~~~~~~~~~~ 154 (431)
T d1m7ya_ 83 YHGLPAFKKAMVDFMAEIRGNKVTFDPNHLVLTAGATSANETFIF---CL-----ADPGEAVLIPTPYYPGFDRDLKWRT 154 (431)
T ss_dssp TTCCHHHHHHHHHHHHHHTTTSSCCCGGGEEEEEHHHHHHHHHHH---HH-----CCTTCEEEEEESCCTTHHHHTTTTT
T ss_pred CcCcHHHHHHHHHHHHHHhCCCCCCCcceEEECCCHHHHHHHHHH---Hh-----cCCCCEEEEeCCCchhHHHHHHHhc
Confidence 36777777777778887776 334456555555 45543333 32 1478999999888877766655 46
Q ss_pred CcEEEEEcCCCC--CCCCHHHHHHHHHh---cCCCEEEEEEEcC-CCccccc--cCHHHHHHHHHHcCCEEEEEcccccc
Q 001989 701 GMKIVSVGTDAK--GNINIEELRKAAEA---NRDNLSTLMVTYP-STHGVYE--EGIDEICKIIHDNGGQVYMDGANMNA 772 (985)
Q Consensus 701 G~~vv~v~~d~~--g~iD~e~L~~~i~~---~~~~t~~Vvv~~p-n~~G~i~--~di~eI~~la~~~galliVD~a~~~~ 772 (985)
|++++.++++.+ +.+|++++++++++ ...+++++++++| |++|.+. .++++|.++|+++|+++++|+++...
T Consensus 155 g~~~v~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~nP~NPtG~~~s~~~l~~i~~~a~~~~~~vI~De~Y~~~ 234 (431)
T d1m7ya_ 155 GVEIVPIHCTSSNGFQITETALEEAYQEAEKRNLRVKGVLVTNPSNPLGTTMTRNELYLLLSFVEDKGIHLISDEIYSGT 234 (431)
T ss_dssp CCEEEEEECCGGGTSCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGG
T ss_pred CceeccccccchhcccccHHHhhhhhhhhhhccCcceEEEecCccccccccccccccccccccccccCcceeeccccccc
Confidence 899999988653 67999999988863 2357899999999 5789885 25889999999999999999987421
Q ss_pred c-cC--CCCC----Cc---------cCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCC
Q 001989 773 Q-VG--LTSP----GY---------IGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKS 836 (985)
Q Consensus 773 ~-~~--l~~p----g~---------~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~ 836 (985)
. .+ +... .. ..--+++.|+.|.|++| |.++|+++.++++........ .
T Consensus 235 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~----G~RiG~~~~~~~~i~~~~~~~-~----------- 298 (431)
T d1m7ya_ 235 AFSSPSFISVMEVLKDRNCDENSEVWQRVHVVYSLSKDLGLP----GFRVGAIYSNDDMVVAAATKM-S----------- 298 (431)
T ss_dssp CCSSSCCCCHHHHTTTTTCSSSSSGGGGEEEEEESSSSSCCG----GGCEEEEEESCHHHHHHHHHH-G-----------
T ss_pred ccCCCCCCCHHHHhhhcccccccccCceEEEEecCcccccCC----CCccceeccchhhhHHHHHHH-h-----------
Confidence 1 00 0000 00 01126677888888654 789999998876532211000 0
Q ss_pred CCCCCCCCcchhhhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccc-
Q 001989 837 QPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKN- 914 (985)
Q Consensus 837 ~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~- 914 (985)
......+ ....+.++...-.....+-+.+..++..++.+.+.+.|++ ++.+. .+.+.++ +.++++....
T Consensus 299 -~~~~~~~----~~~~~~~a~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~gi~~~--~p~gg~f--~w~~l~~~~~~ 369 (431)
T d1m7ya_ 299 -SFGLVSS----QTQHLLSAMLSDKKLTKNYIAENHKRLKQRQKKLVSGLQKSGISCL--NGNAGLF--CWVDMRHLLRS 369 (431)
T ss_dssp -GGSCCCH----HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEC--CCCSSSE--EEEECGGGSSS
T ss_pred -ccccccc----cccchhhhhhccchhhhhhhhhhhhhhhhhhhhhhhhhhcCCcEEe--cCCceeE--EEEECcccccc
Confidence 0011111 1111111111111111223444445566777888888876 55442 3333333 3466653211
Q ss_pred cCCCCHHHHHHHHHH-CCCccCC-C--CCCCCCEEEEeccCCCCHHHHHHHHccCChhHHHHh
Q 001989 915 TAGIEPEDVAKRLMD-YGFHGPT-M--SWPVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHR 973 (985)
Q Consensus 915 ~~g~~~~~v~~~L~~-~Gi~~~~-~--~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~ 973 (985)
....+..+++++|.+ .|+.+.+ . ....++++||++.. .++++++. .++.|++.+++
T Consensus 370 ~~~~~~~~l~~~ll~~~gV~v~PG~~F~~~~~~~~Ri~~a~-~~e~~l~~--al~rL~~~l~~ 429 (431)
T d1m7ya_ 370 NTFEAEMELWKKIVYEVHLNISPGSSCHCTEPGWFRVCFAN-LPERTLDL--AMQRLKAFVGE 429 (431)
T ss_dssp SSHHHHHHHHHHHHHTSCEECEEGGGGTCSSTTEEEEECSS-SCHHHHHH--HHHHHHHHHHH
T ss_pred CcccCHHHHHHHHHHHCCEEEEeccccCCCCCCEEEEEeCc-CCHHHHHH--HHHHHHHHHHH
Confidence 001124467888765 5988642 2 22235899999842 45678888 66778887765
|
| >d2ctza1 c.67.1.3 (A:1-421) O-acetyl-L-homoserine sulfhydrylase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: O-acetyl-L-homoserine sulfhydrylase species: Thermus thermophilus [TaxId: 274]
Probab=99.58 E-value=1e-13 Score=155.33 Aligned_cols=155 Identities=16% Similarity=0.123 Sum_probs=128.0
Q ss_pred HHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCchh----
Q 001989 215 NFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDLKD---- 290 (985)
Q Consensus 215 e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~~~---- 290 (985)
.+++.||+|.|.+. +.++++|.+|+.++++++. ++||+||+++..+..+...++...+.+|+++.++|..+
T Consensus 62 ~LE~~la~LE~~~~--a~~~~SGmaAi~~~~~~l~---~~gd~il~~~~~Yg~t~~l~~~~~~~~gi~~~~~d~~~~~~~ 136 (421)
T d2ctza1 62 VLEKRLAALEGGKA--ALATASGHAAQFLALTTLA---QAGDNIVSTPNLYGGTFNQFKVTLKRLGIEVRFTSREERPEE 136 (421)
T ss_dssp HHHHHHHHHHTCSE--EEEESSHHHHHHHHHHHHC---CTTCEEEECSCCCHHHHHHHHTHHHHTTCEEEECCTTCCHHH
T ss_pred HHHHHHHHHhCCCe--EEEecChHHHHHHHHHhhc---ccccceeecCCcCCchhHHHHHHHhhccccceecccccCcch
Confidence 46689999999876 6788999998888888763 38999999999999999999888888999999998632
Q ss_pred hhc-cCCCEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCcc-ccCCCCCCcccceEEEecC-ccccccCCCC
Q 001989 291 IDY-KSGDVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLA-LTILKPPGELGADIVVGSA-QRFGVPMGYG 366 (985)
Q Consensus 291 l~~-l~~~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~-lg~l~~~~~~GaDi~v~s~-k~lg~P~~~G 366 (985)
.++ ++++|++|++..| |++..+.||++|+++||++|++++|| +.++ -+++..|-++||||++.|+ |.+++. |
T Consensus 137 ~~~~~~~~t~li~~EtpsNP~l~v~Di~~i~~iA~~~g~~~vvD-nT~a~tP~~~~Pl~~GaDiVvhS~TKyl~GH---s 212 (421)
T d2ctza1 137 FLALTDEKTRAWWVESIGNPALNIPDLEALAQAAREKGVALIVD-NTFGMGGYLLRPLAWGAALVTHSLTKWVGGH---G 212 (421)
T ss_dssp HHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEE-CGGGGGGTSCCGGGGTCSEEEEETTTTTTCS---S
T ss_pred hccccCCCceEEEEcCCCcceeEecchHHHHHHHHhcCCceEec-ccccccceeccccccCCcEEEEechhhccCC---C
Confidence 234 7899999999998 89999999999999999999999994 5666 4667889999999999998 888752 2
Q ss_pred CCcEEEEEEchh
Q 001989 367 GPHAAFLATSQE 378 (985)
Q Consensus 367 GP~~G~l~~~~~ 378 (985)
.--+|.+..+++
T Consensus 213 D~l~G~vv~~~~ 224 (421)
T d2ctza1 213 AVIAGAIVDGGN 224 (421)
T ss_dssp CCCCEEEEECSC
T ss_pred CeEEEEEEcCCc
Confidence 223466766554
|
| >d1bjna_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Escherichia coli [TaxId: 562]
Probab=99.56 E-value=1e-13 Score=153.45 Aligned_cols=323 Identities=11% Similarity=0.007 Sum_probs=193.9
Q ss_pred CCCCCCCCCcHHHHHHHHhCCcccccc---CCChhh---HhhhHHHHHHHHHHHHHHhcCCCCc-ceeeccchHHHHHHH
Q 001989 172 GMGYYNTHVPPVILRNIMENPAWYTQY---TPYQAE---IAQGRLESLLNFQTMIADLTGLPMS-NASLLDEGTAAAEAM 244 (985)
Q Consensus 172 G~g~y~~~~p~~v~~~i~~~~~~~t~~---~pyq~e---~sqg~l~~i~e~q~~ia~L~g~~~~-~~sl~~~~ta~~ea~ 244 (985)
+.| |..+|+.|.+++.+. +..| ...-.+ .++.-.+.+.+.++.|++|+|++.. .+.+.+|++.++..+
T Consensus 6 ~pG--P~~~p~~Vl~a~~~~---~~~~~~~~~~~~~~sHRs~ef~~l~~~~r~~l~~l~~~~~~~~v~~~~gs~t~~~~a 80 (360)
T d1bjna_ 6 SSG--PAMLPAEVLKQAQQE---LRDWNGLGTSVMEVSHRGKEFIQVAEEAEKDFRDLLNVPSNYKVLFCHGGGRGQFAA 80 (360)
T ss_dssp CSS--SCCCCHHHHHHHHHT---SSSGGGSSSCGGGSCTTSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHH
T ss_pred CCC--CcCCCHHHHHHHHHH---HhhhcccCccccccCcCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCchHHHHhh
Confidence 556 566888887665542 2222 111112 2455678899999999999999754 455566665444333
Q ss_pred HHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc--------hhhhc-cCCCEeEEEEEc-CCCCeeecc
Q 001989 245 AMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL--------KDIDY-KSGDVCGVLVQY-PGTEGEVLD 314 (985)
Q Consensus 245 ~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~--------~~l~~-l~~~t~~V~v~~-pn~~G~v~d 314 (985)
..... .++++.+++....+ ....|..+++..|+.++.... ++++. +.++++++++++ .|.+|...|
T Consensus 81 ~~~~~--~~~~~~v~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~t~~~~~ 156 (360)
T d1bjna_ 81 VPLNI--LGDKTTADYVDAGY--WAASAIKEAKKYCTPNVFDAKVTVDGLRAVKPMREWQLSDNAAYMHYCPNETIDGIA 156 (360)
T ss_dssp HHHHH--CTTCCEEEEEESSH--HHHHHHHHHTTTSEEEEEECEEEETTEEEECCGGGCCCCSSCSCEEECSEETTTTEE
T ss_pred hhhcc--cccccccceecccc--hhhhhHHHHhhcCccceeeccccCCCcchhhhhhhhccCCceeEEEecccccccCcc
Confidence 32221 23666776665444 333344446677877766542 12333 567777777765 477888888
Q ss_pred HHHHHHHHHhCCcEEEEEecCccccCCCCCCcccceEEEecC-ccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeec
Q 001989 315 YGDFIKNAHANGVKVVMATDLLALTILKPPGELGADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSID 393 (985)
Q Consensus 315 i~~I~~~a~~~galliV~a~~~~lg~l~~~~~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d 393 (985)
+.++. +|.++++++|++ ..+++.. +...+++|+++.++ |.++ ++|++++++++++..+..+....+.
T Consensus 157 ~~~i~--~~~~~~~v~vDa-~~~~~~~-~vd~~~~dv~~~ss~k~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~--- 224 (360)
T d1bjna_ 157 IDETP--DFGADVVVAADF-SSTILSR-PIDVSRYGVIYAGAQKNIG-----PAGLTIVIVREDLLGKANIACPSIL--- 224 (360)
T ss_dssp CCCCC--CCCTTCCEEEEC-TTTTTSS-CCCGGGCSEEEEETTTTTS-----STTCEEEEEEGGGCSCCCTTSCGGG---
T ss_pred cccee--cccccceeeeee-eccccce-eeeeccceeEEEEcccccc-----cCCCceeEeeehhhhhccccCCcch---
Confidence 77664 577888888853 3454433 34567889988888 6664 3466788888876655443221110
Q ss_pred CCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCC-
Q 001989 394 SSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGL- 472 (985)
Q Consensus 394 ~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~- 472 (985)
+.. ....+...+....+.....+..+. ...+...+++...++..+.+.++.+.+...+.......
T Consensus 225 ------~~~------~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (360)
T d1bjna_ 225 ------DYS------ILNDNGSMFNTPPTFAWYLSGLVF--KWLKANGGVAEMDKINQQKAELLYGVIDNSDFYRNDVAK 290 (360)
T ss_dssp ------CHH------HHHHTTTCSSCCCHHHHHHHHHHH--HHHHHTTHHHHHHHHHHHHHHHHHHHHHHCSSEECCBCG
T ss_pred ------hhH------HHHhhhhhccccccchHHHHHHHH--HHHhhhhhHHHHHHHHHHHHHHHHHhhhccccccccCCc
Confidence 000 111111111111111222222222 23444557788888888888888888887763333322
Q ss_pred -CCc-ceEEEecCC---HHHHHHHHHHcCceeeee--cCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 473 -PFF-DTVKVKCAD---AHAIASAAYKIEMNLRVV--DSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 473 -~~~-~~~~~~~~~---~~~v~~~L~~~GI~~~~~--~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
... ..++|..++ ..++.+.|.++||.+..- .-+.+|+|+..++|.||||+|+++|++
T Consensus 291 ~~rs~~v~~f~~~~~~~~~~~~~~l~~~Gi~~~~G~~~~g~~Ris~~~~~t~edV~~li~~l~e 354 (360)
T d1bjna_ 291 RNRSRMNVPFQLADSALDKLFLEESFAAGLHALKGHRVVGGMRASIYNAMPLEGVKALTDFMVE 354 (360)
T ss_dssp GGBCSSEEEEEESSGGGHHHHHHHHHHTTEECCBCCTTTCSEEEECCTTSCHHHHHHHHHHHHH
T ss_pred ccccceEEEEEcCCcccHHHHHHHHHHCCCEeecCCCccCeEEEEecCCCCHHHHHHHHHHHHH
Confidence 122 246677764 788999999999977531 114599999999999999999999983
|
| >d1vp4a_ c.67.1.1 (A:) Putative aminotransferase TM1131 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative aminotransferase TM1131 species: Thermotoga maritima [TaxId: 2336]
Probab=99.55 E-value=1.1e-14 Score=166.10 Aligned_cols=308 Identities=11% Similarity=0.052 Sum_probs=186.2
Q ss_pred hhhHHHHHHHHHHHHHHHhCCC---ccceecCcHHH-HHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCc
Q 001989 627 AQGYQEMFNNLGEWLCTITGFD---SFSLQPNAGAA-GEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGM 702 (985)
Q Consensus 627 ~~G~~~~~~e~~~~la~l~G~~---~~~~~~~sGa~-a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~ 702 (985)
.+|..++.+.+.+++.+..|.+ ..++..++|++ |. .+++..+ ..+||+|+++++.+..+...++..|+
T Consensus 79 ~~G~~~LR~aia~~~~~~~g~~~~~~~~I~it~G~~~al---~~~~~~~-----~~~Gd~Vlv~~P~y~~~~~~~~~~g~ 150 (420)
T d1vp4a_ 79 TEGDPVLKQQILKLLERMYGITGLDEDNLIFTVGSQQAL---DLIGKLF-----LDDESYCVLDDPAYLGAINAFRQYLA 150 (420)
T ss_dssp TTCCHHHHHHHHHHHHHHHCCCSCCGGGEEEEEHHHHHH---HHHHHHH-----CCTTCEEEEEESCCHHHHHHHHTTTC
T ss_pred CcCCHHHHHHHHHHHHHHhCCCCCCHHHeEeccchhhhH---HHHHHhh-----hccccccccccccccchhHHHHHHhh
Confidence 4788788888888888887764 34566666654 44 3333333 14789999999877777777889999
Q ss_pred EEEEEcCCCCCCCCHHHHHHHHHhc------CCCEEEEEEEcC-CCccccc--cCHHHHHHHHHHcCCEEEEEcccccc-
Q 001989 703 KIVSVGTDAKGNINIEELRKAAEAN------RDNLSTLMVTYP-STHGVYE--EGIDEICKIIHDNGGQVYMDGANMNA- 772 (985)
Q Consensus 703 ~vv~v~~d~~g~iD~e~L~~~i~~~------~~~t~~Vvv~~p-n~~G~i~--~di~eI~~la~~~galliVD~a~~~~- 772 (985)
+++.+|.+++ .+|++.++..+.+. ++.+.++++.+| |++|.+. .++++|+++|+++++++++|.++..-
T Consensus 151 ~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~NPtG~~~s~~~~~~i~~~a~~~~i~ii~De~y~~l~ 229 (420)
T d1vp4a_ 151 NFVVVPLEDD-GMDLNVLERKLSEFDKNGKIKQVKFIYVVSNFHNPAGVTTSLEKRKALVEIAEKYDLFIVEDDPYGALR 229 (420)
T ss_dssp EEEEEEEETT-EECHHHHHHHHHHHHHTTCGGGEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECSSTTCB
T ss_pred hccccccccc-ccccchhhhhhhhhHHHhhccccceeeEecCCCCccchhhhhhhhhhhhhhhhcccccccccchhhhcc
Confidence 9999998654 47888887765421 123445556677 5789874 36899999999999999999987311
Q ss_pred ccCC-CCC----CccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcch
Q 001989 773 QVGL-TSP----GYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPW 847 (985)
Q Consensus 773 ~~~l-~~p----g~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~ 847 (985)
..+- ..+ ...+.-++..++.|+++ .|.++|++++++++.+.+.... ...+.+++..
T Consensus 230 ~~~~~~~~~~~~~~~~~~i~~~s~sk~~~-----~G~RiG~~~~~~~~i~~l~~~~--------------~~~~~~~~~~ 290 (420)
T d1vp4a_ 230 YEGETVDPIFKIGGPERVVLLNTFSKVLA-----PGLRIGMVAGSKEFIRKIVQAK--------------QSADLCSPAI 290 (420)
T ss_dssp CSSCCCCCHHHHHCTTTEEEEEESTTTTC-----GGGCEEEEECCHHHHHHHHHHH--------------HHHHSSCCHH
T ss_pred ccCcccccccccccccceeEEeccccccc-----cccccccccccchhhhhhhhhh--------------hhccccCchh
Confidence 1110 001 11233456666777653 3689999998877665432100 0001111111
Q ss_pred hhhHHHHHHHHHHHHhc-HHHHHHHHHHHHHHHHHHHHHhhcc----CCeeecCCCCceeeEEEEEecCccccCCCCHHH
Q 001989 848 GSALILPISYTYIAMMG-SKGLTEASKIAILNANYMAKRLEKH----YPILFRGVNGTVAHEFIVDLRGLKNTAGIEPED 922 (985)
Q Consensus 848 g~~~~~~~a~a~l~~lg-~eGl~~~~~~~~~~a~~l~~~L~~g----~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~ 922 (985)
.+.. +...+..-. .+.+++..+...++.+.+.+.|++. .++.+..+.+.++ +.++++ .+.+..+
T Consensus 291 ~q~~----~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~g~~~~~p~gg~f--~~~~~~-----~~~d~~~ 359 (420)
T d1vp4a_ 291 THRL----AARYLERYDLLEQLKPTIELYRRKRTVMLNALEEYFSDIPGVKWVKSEGGLF--IWLTLP-----EGFDTWE 359 (420)
T ss_dssp HHHH----HHHHHHHSCHHHHTHHHHHHHHHHHHHHHHHHHHHSTTSTTCEECCCSBSSE--EEEECC-----TTCCTTT
T ss_pred hhhh----hhhhcccccccccchhHHHHhhhhcccchhhhhhhhccCCCcEEecCCceEE--EEEECC-----CCCCHHH
Confidence 1111 112222111 1223333444455556666666541 2333333333333 346665 2567778
Q ss_pred HHHHHHHCCCccCC-CCCC----CCCEEEEeccCCCCHHHHHHHHccCChhHHHHhhcc
Q 001989 923 VAKRLMDYGFHGPT-MSWP----VPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRLKM 976 (985)
Q Consensus 923 v~~~L~~~Gi~~~~-~~~p----~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~~~ 976 (985)
+.+.|.++|+.+.+ ..|. ..+++|||++. .+.|++++ .++.|++++++.+.
T Consensus 360 ~~~~l~~~gV~v~PG~~F~~~~~~~~~iRls~~~-~~~e~l~~--a~~rL~~~l~~~~~ 415 (420)
T d1vp4a_ 360 MFEYAKRKKVFYVPGRVFKVYDEPSPSMRLSFCL-PPDEKIVE--GIKRLREVVLEYGK 415 (420)
T ss_dssp THHHHHHHTEECEEGGGGCTTCCCCSEEEEECSS-SCHHHHHH--HHHHHHHHHHHHHH
T ss_pred HHHHHHHCCeEEEechhhCCCCCCCCEEEEEeCc-CCHHHHHH--HHHHHHHHHHHhhH
Confidence 88999999998632 2221 24799999853 57788998 77889999887653
|
| >d1n8pa_ c.67.1.3 (A:) Cystathionine gamma-lyase (CYS3) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-lyase (CYS3) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.54 E-value=2e-13 Score=152.15 Aligned_cols=272 Identities=15% Similarity=0.125 Sum_probs=186.0
Q ss_pred HHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc--hhh
Q 001989 214 LNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL--KDI 291 (985)
Q Consensus 214 ~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~--~~l 291 (985)
..+++.||+|.|.+. +.++++|.+++.++ ++. +. +||+||++...+......+..+...+|+++.+++. +++
T Consensus 58 ~~lE~~la~LE~~~~--a~~~sSGmaAi~~~-l~~-l~--~gd~iv~~~~~yg~t~~~~~~~l~~~gi~~~~~~~~~~~~ 131 (393)
T d1n8pa_ 58 ENLERAVAALENAQY--GLAFSSGSATTATI-LQS-LP--QGSHAVSIGDVYGGTHRYFTKVANAHGVETSFTNDLLNDL 131 (393)
T ss_dssp HHHHHHHHHHTTCSE--EEEESCHHHHHHHH-HHT-SC--SSCEEEEESSCCHHHHHHHHHTSTTTCSCCEEESSHHHHH
T ss_pred HHHHHHHHHHhCCce--EEEecCchhHHHhh-hhc-cc--CCCeeeeeeeecccchhhhhhhhhcccceeEEeecchHHH
Confidence 346789999999876 66788888877544 332 22 78999999999999999999888899999998875 467
Q ss_pred hc-cCCCEeEEEEEcC-CCCeeeccHHHHHHHHH----hCCcEEEEEecCccccCCCCCCcccceEEEecC-ccccccCC
Q 001989 292 DY-KSGDVCGVLVQYP-GTEGEVLDYGDFIKNAH----ANGVKVVMATDLLALTILKPPGELGADIVVGSA-QRFGVPMG 364 (985)
Q Consensus 292 ~~-l~~~t~~V~v~~p-n~~G~v~di~~I~~~a~----~~galliV~a~~~~lg~l~~~~~~GaDi~v~s~-k~lg~P~~ 364 (985)
++ ++++|++|++..| |++..+.||++|+++|| ++|++++|| +.++-+++..|-++|||||+.|+ |.+++.
T Consensus 132 ~~~i~~~t~lv~~EspsNP~l~v~Di~~ia~~a~~~~~~~g~~lvVD-nT~atP~~~~Pl~~GADiVvhS~TKyi~Gh-- 208 (393)
T d1n8pa_ 132 PQLIKENTKLVWIETPTNPTLKVTDIQKVADLIKKHAAGQDVILVVD-NTFLSPYISNPLNFGADIVVHSATKYINGH-- 208 (393)
T ss_dssp HHHSCSSEEEEEECSSCTTTCCCCCHHHHHHHHHHHTTTTTCEEEEE-CTTTHHHHCCGGGGTCSEEEEETTTTTTCS--
T ss_pred HHHhhhhcceeEecCcchhhhhccchhhhhhhhhhhcccCCceEEEe-cCccCcccCCchhhCCCEEEEccccccCCC--
Confidence 77 8999999999998 89999999999999999 778999994 67777777889999999999998 888753
Q ss_pred CCCCcEEEEEEchh-hHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcchH
Q 001989 365 YGGPHAAFLATSQE-YKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGL 443 (985)
Q Consensus 365 ~GGP~~G~l~~~~~-~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl 443 (985)
|.--+|.++.+++ +.+++. ..++.-|. .+ ++. ..|+...|.+-+
T Consensus 209 -sDv~~G~v~~~~~~~~~~l~-------------------------~~~~~~G~-~~---~p~-----~a~ll~rgl~Tl 253 (393)
T d1n8pa_ 209 -SDVVLGVLATNNKPLYERLQ-------------------------FLQNAIGA-IP---SPF-----DAWLTHRGLKTL 253 (393)
T ss_dssp -SCCCCEEEEESCHHHHHHHH-------------------------HHHHHHCC-CC---CHH-----HHHHHHHHHTTH
T ss_pred -CccccceeeecchhHHHHHH-------------------------HHHhhcCC-CC---ChH-----HHHHHHhCCcch
Confidence 3333466665543 333220 01111111 00 111 224455666677
Q ss_pred HHHHHHHHHHHHHHHHHHhcC-CCeEEc-CC-----CC-------------cceEEEecCC-HHHHHHHHHHcCc-----
Q 001989 444 KTIAQRVHGLAGTFALGLKKL-GTVEVQ-GL-----PF-------------FDTVKVKCAD-AHAIASAAYKIEM----- 497 (985)
Q Consensus 444 ~~i~~~~~~~a~~l~~~L~~~-g~~~~~-~~-----~~-------------~~~~~~~~~~-~~~v~~~L~~~GI----- 497 (985)
..+.++..++|..+++.|++. ..++-+ .+ +. ..-++|.+.+ .+...+.+..-.+
T Consensus 254 ~lR~~~~~~nA~~lA~~L~~~~~~V~~V~yP~l~~~~~~~~a~~~~~~~~~G~~~sf~l~~~~~~~~~f~~~l~l~~~~~ 333 (393)
T d1n8pa_ 254 HLRVRQAALSANKIAEFLAADKENVVAVNYPGLKTHPNYDVVLKQHRDALGGGMISFRIKGGAEAASKFASSTRLFTLAE 333 (393)
T ss_dssp HHHHHHHHHHHHHHHHHHTSCTTTEEEEECTTSTTSTTHHHHHHHSGGGCCCSEEEEEESSCHHHHHHHHHHCSSSEECS
T ss_pred hhHHHHHHHHHHHHHHHHHhccCcEEEEecccccccccchhhhhccccCCCCceEEEEEeCCHHHHHHHHHhCCcceecc
Confidence 788888899999999999764 325432 11 10 1247777764 3333333332222
Q ss_pred eee----e---------------------ecCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 498 NLR----V---------------------VDSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 498 ~~~----~---------------------~~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
.+. . +.++.||+|++.-+.++=|+.|-++|..
T Consensus 334 SlGg~~SLi~~p~~~~h~~~~~~~r~~~gi~~~liRlSvGlE~~~DLi~Dl~~AL~~ 390 (393)
T d1n8pa_ 334 SLGGIESLLEVPAVMTHGGIPKEAREASGVFDDLVRISVGIEDTDDLLEDIKQALKQ 390 (393)
T ss_dssp CCCCSSCEEECTTTTTSCSSCTTTTTTTSCCTTEEEEECCSSCHHHHHHHHHHHHHH
T ss_pred cCCCcCceEeCchhhccccCCHHHHHhcCCCcCEEEEEeccCCHHHHHHHHHHHHHH
Confidence 110 0 1236799999976655556777777653
|
| >d2f8ja1 c.67.1.1 (A:1-334) Histidinol-phosphate aminotransferase HisC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Histidinol-phosphate aminotransferase HisC species: Thermotoga maritima [TaxId: 2336]
Probab=99.54 E-value=1.2e-13 Score=152.40 Aligned_cols=265 Identities=13% Similarity=0.068 Sum_probs=169.5
Q ss_pred HHHHHHHHHhCC---CccceecCcHHH-HHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcCCC
Q 001989 636 NLGEWLCTITGF---DSFSLQPNAGAA-GEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDA 711 (985)
Q Consensus 636 e~~~~la~l~G~---~~~~~~~~sGa~-a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~d~ 711 (985)
++++.+++.++. +..++..++|++ +. .++++ .+|+|+++++.+..+...+++.|++++.+|+++
T Consensus 60 ~Lr~aia~~~~~~~v~~d~I~it~G~~~~l---~~l~~---------~~d~v~i~~P~y~~~~~~~~~~g~~~v~v~~~~ 127 (334)
T d2f8ja1 60 ELIEKILSYLDTDFLSKNNVSVGNGADEII---YVMML---------MFDRSVFFPPTYSCYRIFAKAVGAKFLEVPLTK 127 (334)
T ss_dssp HHHHHHHHHHTCSSCCGGGEEEEEHHHHHH---HHHHH---------HSSEEEECSSCCHHHHHHHHHHTCCEEECCCCT
T ss_pred HHHHHHHHHhcccCCCcceEEecCcchhHH---HHHhh---------hccccccccccccccccchhccCCccccccccc
Confidence 566777777654 345566666765 33 22222 247899988877777777889999999999987
Q ss_pred CCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCC--CCCCccCCcEEE
Q 001989 712 KGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGL--TSPGYIGADVCH 788 (985)
Q Consensus 712 ~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l--~~pg~~g~Di~~ 788 (985)
++..+- .. .++++++++++| |++|.+. +.++|.++ .++++++++|.++....... ..+.....-+++
T Consensus 128 ~~~~~~-----~~---~~~~~~l~l~nP~NPtG~~~-s~~~l~~~-~~~~~~ii~Dd~~~~~~~~~~~~~~~~~~~~i~~ 197 (334)
T d2f8ja1 128 DLRIPE-----VN---VGEGDVVFIPNPNNPTGHVF-EREEIERI-LKTGAFVALDEAYYEFHGESYVDFLKKYENLAVI 197 (334)
T ss_dssp TSCCCC-----CC---CCTTEEEEEESSCTTTCCCC-CHHHHHHH-HTTTCEEEEECTTGGGTCCCCGGGGGTCSSEEEE
T ss_pred cccccc-----cc---cccceEEEecccccccceee-cHHHhhcc-ccceeEEeecccchhhcccccccccccCceEEEE
Confidence 765541 12 267889999999 5799987 67788765 56799999998763211110 011112233677
Q ss_pred eCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHHH
Q 001989 789 LNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGL 868 (985)
Q Consensus 789 ~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl 868 (985)
.|+.|+++. .|.++|++++++++...+... +.+.++++ ....++++++. ..+.+
T Consensus 198 ~S~SK~~~~----~G~R~G~~~~~~~~i~~l~~~--------------~~~~~~s~------~~~~~a~~~l~--~~~~~ 251 (334)
T d2f8ja1 198 RTFSKAFSL----AAQRVGYVVASEKFIDAYNRV--------------RLPFNVSY------VSQMFAKVALD--HREIF 251 (334)
T ss_dssp EESTTTSSC----TTTCEEEEEECHHHHHHHHHH--------------SCTTCSCH------HHHHHHHHHHH--THHHH
T ss_pred ecCccccch----hhhhhhhcccchHHHHHHHHh--------------hcccccch------hhhhhcccccc--cccch
Confidence 788888754 478999999988766543211 01112221 11122233333 23455
Q ss_pred HHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCCCCCCCEEEE
Q 001989 869 TEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMI 947 (985)
Q Consensus 869 ~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~~p~~~~lri 947 (985)
.+..+...++++++.+.|++ |+++. .+.+.+ +.+.++ ..+..++.+.|.++||.+..+ ++++||
T Consensus 252 ~~~~~~~~~~r~~l~~~L~~~g~~~~--~~~g~f---~~~~~~------~~~~~~~~~~L~~~GI~vr~~----~~~vRi 316 (334)
T d2f8ja1 252 EERTKFIVEERERMKSALREMGYRIT--DSRGNF---VFVFME------KEEKERLLEHLRTKNVAVRSF----REGVRI 316 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCEEC--CCCSSE---EEEECC------HHHHHHHHHHHHHTTEECEEE----TTEEEE
T ss_pred hhHHHHHHHHHHHHHHHHHHCCCeEC--CCCceE---EEEECC------CCCHHHHHHHHHHCCCEECCC----CCeEEE
Confidence 56666777888899999987 55542 333432 234443 235788999999999987533 489999
Q ss_pred eccCCCCHHHHHHHHccCChh
Q 001989 948 EPTESESKSWTGIVMLSSPSE 968 (985)
Q Consensus 948 s~t~~~t~eeId~~~~~~~l~ 968 (985)
++ .|.||+++ ++++|+
T Consensus 317 s~---g~~ee~~~--l~~~l~ 332 (334)
T d2f8ja1 317 TI---GKREENDM--ILRELE 332 (334)
T ss_dssp EC---CCHHHHHH--HHHHHH
T ss_pred Ec---CCHHHHHH--HHHHHh
Confidence 97 58899999 545554
|
| >d1c7ga_ c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 549]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tyrosine phenol-lyase species: Erwinia herbicola [TaxId: 549]
Probab=99.54 E-value=2.2e-14 Score=164.79 Aligned_cols=304 Identities=14% Similarity=0.163 Sum_probs=176.2
Q ss_pred HHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcCC---
Q 001989 634 FNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTD--- 710 (985)
Q Consensus 634 ~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~d--- 710 (985)
+.++++.+++++|.+.+ ++++||+.|+..++.++. +++++|+....++. ........|+..+.+..+
T Consensus 77 ~~~lE~~~a~l~G~e~a-l~~~SGt~An~~a~~~l~--------~~Gd~Vi~~~~f~~-~~~~i~~~g~~~~~~~~~~~~ 146 (456)
T d1c7ga_ 77 FYHLEKTVKELFGFKHI-VPTHQGRGAENLLSQLAI--------KPGQYVAGNMYFTT-TRFHQEKNGATFVDIVRDEAH 146 (456)
T ss_dssp HHHHHHHHHHHHCCSEE-EEESSHHHHHHHHHHHHC--------CTTEEEEESSCCHH-HHHHHHHTTEEEEECBCGGGG
T ss_pred HHHHHHHHHHHhCCCeE-EECCCHHHHHHHHHHHhc--------CCCCeEecCcchHH-HHHHHHHcCceeeeccccccc
Confidence 56889999999999986 567889988865554431 46777776543332 223345678877655432
Q ss_pred -------CCCCCCHHHHHHHHHhcC-CCEEEEEEEcCC-Cc-cccc--cCHHHHHHHHHHcCCEEEEEcccccccc----
Q 001989 711 -------AKGNINIEELRKAAEANR-DNLSTLMVTYPS-TH-GVYE--EGIDEICKIIHDNGGQVYMDGANMNAQV---- 774 (985)
Q Consensus 711 -------~~g~iD~e~L~~~i~~~~-~~t~~Vvv~~pn-~~-G~i~--~di~eI~~la~~~galliVD~a~~~~~~---- 774 (985)
.+|.+|+++|+++|+++. ++++++++++|+ .. |... .++++|.++|+++|+.+|+|+|+..+..
T Consensus 147 ~~~~~~~~~~~~d~~~le~~I~~~~~~~~~~i~~e~~~n~~gG~~~~~~~l~~i~~~a~~~~~~~~~D~a~~~~~a~~~~ 226 (456)
T d1c7ga_ 147 DASLNLPFKGDIDLNKLATLIKEKGAENIAYICLAVTVNLAGGQPVSMANMRAVHEMASTYGIKIFYDATRCVENAYFIK 226 (456)
T ss_dssp CTTCCCSCTTCBCHHHHHHHHHHHCGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHHH
T ss_pred cccccCCccccCCHHHHHHHhhhcCCccceeEEeeecccccccceecHHHHHHHHHHHHHcCCEEEEEcchhhcchhhhc
Confidence 247899999999998543 467888999884 43 4332 2689999999999999999999853211
Q ss_pred ----CCC--CCCc------cCCcEEEeCCcccccccCCCCCCceEEEEEccc-ccCcCCCCccccCCCCCCCCCCCCCCC
Q 001989 775 ----GLT--SPGY------IGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKH-LAPFLPSHPVVSTGGIPAPEKSQPLGT 841 (985)
Q Consensus 775 ----~l~--~pg~------~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~-l~~~lp~~~~g~~~~~~~~~~~~~~~~ 841 (985)
+.. .+++ -.+|++++++||.+ ++|++|+++.+++ +.+.+....... . .....+.
T Consensus 227 ~~~~~~~~~~i~~i~~~~~~~ad~~s~s~~K~~------~~~~GG~i~~~~~~l~~~~r~~~~~~-~------g~~~~g~ 293 (456)
T d1c7ga_ 227 EQEAGYENVSIKDIVHEMFSYADGCTMSGKKDC------LVNIGGFLCMNDEEMFSAAKELVVVY-E------GMPSYGG 293 (456)
T ss_dssp HHSTTCTTSCHHHHHHHHHTTCSEEEEETTTTT------CCSSCEEEEESCHHHHHHHHHHHHHH-T------CCTTTTT
T ss_pred ccccccCCCChhhhccccccccccEEEeccccc------cccceeEEEcCCHHHHHHHHHhcccc-C------CCcccch
Confidence 000 0100 13799999999987 3456688888753 333221110000 0 0001111
Q ss_pred CCCcchhhhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecC----ccccC
Q 001989 842 IAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRG----LKNTA 916 (985)
Q Consensus 842 i~s~~~g~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~----~~~~~ 916 (985)
.. .....+.+.......+.+ ..++..++++||.++|++ ++.+..+ . + .|.+.++... +.. .
T Consensus 294 ~~-----~~~~~a~a~~l~e~~~~~----~l~~r~~~~~~L~e~L~~~g~~vv~p-~-g--~~~v~vda~~~~~~i~~-~ 359 (456)
T d1c7ga_ 294 LA-----GRDMEAMAIGLREAMQYE----YIEHRVKQVRYLGDKLREAGVPIVEP-T-G--GHAVFLDARRFCPHLTQ-D 359 (456)
T ss_dssp CC-----HHHHHHHHHHHHHHTCHH----HHHHHHHHHHHHHHHHHHTTCCBCSS-C-C--SSEEEEEHHHHCTTSCG-G
T ss_pred hh-----HHHHHHHHHHHHHhcCHH----HHHHHHHHHHHHHHHHHhccCCcccC-C-C--CcceeEechhhccCCCc-c
Confidence 11 111112122222223333 233446677999999987 5555432 1 1 1223333211 100 0
Q ss_pred CCCHHHHHHHH-HHCCCccCCC--------------CCCCCCEEEEeccC-CCCHHHHHHHHccCChhHHHHhhcc
Q 001989 917 GIEPEDVAKRL-MDYGFHGPTM--------------SWPVPGTLMIEPTE-SESKSWTGIVMLSSPSEKKLHRLKM 976 (985)
Q Consensus 917 g~~~~~v~~~L-~~~Gi~~~~~--------------~~p~~~~lris~t~-~~t~eeId~~~~~~~l~~~~~~~~~ 976 (985)
......+...| .+.||.+... .+|..+.+|++++. ..|+|+||. .+++|++++++...
T Consensus 360 ~~~~~~~~~~l~~~~GIr~~~~g~~~~~~~~~~g~~~~~~~e~vRLaip~~~~T~e~iD~--Vae~i~~v~~~~~~ 433 (456)
T d1c7ga_ 360 QFPAQSLAASIYMETGVRSMERGIVSAGRSKETGENHRPKLETVRLTIPRRVYTYAHMDV--VADGIIKLYQHKED 433 (456)
T ss_dssp GCHHHHHHHHHHHHHSEECEEESHHHHCBCSSSCCBCCCSCCEEEEECCTTSCCHHHHHH--HHHHHHHHHTTGGG
T ss_pred cccHHHHHHHHHHHhCeeecccCccccccCCcccCccCCccceEEEecCcccCCHHHHHH--HHHHHHHHHhhhhh
Confidence 12244444444 4568764211 12234679999874 459999999 78888888876443
|
| >d1m6sa_ c.67.1.1 (A:) Low-specificity threonine aldolase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Low-specificity threonine aldolase species: Thermotoga maritima [TaxId: 2336]
Probab=99.54 E-value=3.7e-15 Score=162.90 Aligned_cols=293 Identities=17% Similarity=0.131 Sum_probs=169.4
Q ss_pred HHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccH---HHHHHCCcEEEEEcCC
Q 001989 634 FNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNP---ATAAMCGMKIVSVGTD 710 (985)
Q Consensus 634 ~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~---~~a~~~G~~vv~v~~d 710 (985)
..++++.+|+++|.+.. ++++||++|+++++.+++ .+++.+++....|..+. ......+..++.++.
T Consensus 36 ~~~le~~lA~~~G~~~~-~~~~sGt~A~~~al~a~~--------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 105 (343)
T d1m6sa_ 36 INELERLAAETFGKEAA-LFVPSGTMGNQVSIMAHT--------QRGDEVILEADSHIFWYEVGAMAVLSGVMPHPVPG- 105 (343)
T ss_dssp HHHHHHHHHHHTTCSEE-EEESCHHHHHHHHHHHHC--------CTTCEEEEETTCHHHHSSTTHHHHHTCCEEEEECE-
T ss_pred HHHHHHHHHHHHCCCeE-EEeCCHHHHHHHHHHHHh--------ccCCceeccccccceeeecccccccccceeecccc-
Confidence 56889999999998864 556789888766655443 35678887766553221 223455666666664
Q ss_pred CCCCCCHHHHHHHHHhc---CCCEEEEEEEc-CC-Cccccc--cCHHHHHHHHHHcCCEEEEEccccccccCCCC-C---
Q 001989 711 AKGNINIEELRKAAEAN---RDNLSTLMVTY-PS-THGVYE--EGIDEICKIIHDNGGQVYMDGANMNAQVGLTS-P--- 779 (985)
Q Consensus 711 ~~g~iD~e~L~~~i~~~---~~~t~~Vvv~~-pn-~~G~i~--~di~eI~~la~~~galliVD~a~~~~~~~l~~-p--- 779 (985)
..+..|++.+++.+... .+++..+++.. ++ ..|.+. .++++|+++|+++|+++++|+++.....+... .
T Consensus 106 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~g~~~~~D~a~~~~~~~~~~~~~~~ 185 (343)
T d1m6sa_ 106 KNGAMDPDDVRKAIRPRNIHFPRTSLIAIENTHNRSGGRVVPLENIKEICTIAKEHGINVHIDGARIFNASIASGVPVKE 185 (343)
T ss_dssp ETTEECHHHHHHHSCCSCTTSCCEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCEEEEEETTHHHHHHHHCCCHHH
T ss_pred ccCccCHHHHHHhhhhhhcccccccccccccccccCCceecCHHHHHHHHHHHHhcCeEEEeccccccccccccccchhh
Confidence 35678999999998632 23456555554 34 345443 26788888999999999999987422211100 0
Q ss_pred CccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHH
Q 001989 780 GYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTY 859 (985)
Q Consensus 780 g~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~ 859 (985)
.....+..+++.+|. .+|...|.+....+........ .. ....+... . ..+.+++..
T Consensus 186 ~~~~~~~~~~~~~~~------~~g~~~~~~~~~~~~~~~~~~~--~~----------~~~~~~~~----~-~~~~a~~~~ 242 (343)
T d1m6sa_ 186 YAGYADSVMFCLSKG------LCAPVGSVVVGDRDFIERARKA--RK----------MLGGGMRQ----A-GVLAAAGII 242 (343)
T ss_dssp HHHTCSEEEEESSST------TCCSSCEEEEECHHHHHHHHHH--HH----------HHTCCCSS----T-HHHHHHHHH
T ss_pred hcccccccccccccc------ccccccccccccHHHHhhhHhh--Cc----------ccccccch----h-HHHHHhhhh
Confidence 011234445544443 3455566666665433221100 00 00011111 1 111122222
Q ss_pred HHHhcHHHHHHHHHHHHHHHHHHHHHhhccCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCCC
Q 001989 860 IAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSW 939 (985)
Q Consensus 860 l~~lg~eGl~~~~~~~~~~a~~l~~~L~~g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~~ 939 (985)
......+. .+...++..++.+.+.+........+ ...+.+.+.++. .+.+..++.++|.++||++....
T Consensus 243 ~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~----~~~~a~~l~~~L~~~Gi~v~~~~- 311 (343)
T d1m6sa_ 243 ALTKMVDR----LKEDHENARFLALKLKEIGYSVNPED--VKTNMVILRTDN----LKVNAHGFIEALRNSGVLANAVS- 311 (343)
T ss_dssp HHHHSSTT----HHHHHHHHHHHHHHHHHHTCBCCGGG--CCSSEEEEECTT----SSSCHHHHHHHHHHHTEECEEEE-
T ss_pred hhhhhHHH----HHHHHHHHHHhhhHHHHhccCccCCC--CCceEEEEEeCC----CcccHHHHHHHHHHCCCEEecCC-
Confidence 22111122 22334455555555554111111111 112335566542 24678899999999999986554
Q ss_pred CCCCEEEEeccCCCCHHHHHHHHccCChhHHHHhh
Q 001989 940 PVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRL 974 (985)
Q Consensus 940 p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~ 974 (985)
++.+||+++..+|+||||+ ++++|+++++++
T Consensus 312 --~~~iRi~~~~~~t~edid~--~v~~l~~v~~~~ 342 (343)
T d1m6sa_ 312 --DTEIRLVTHKDVSRNDIEE--ALNIFEKLFRKF 342 (343)
T ss_dssp --TTEEEEECCTTSCHHHHHH--HHHHHHHHHHHH
T ss_pred --CCEEEEECCCCCCHHHHHH--HHHHHHHHHHHh
Confidence 3689999999999999999 899999999876
|
| >d2c0ra1 c.67.1.4 (A:2-362) Phosphoserine aminotransferase, PSAT {Bacillus circulans, subsp. alkalophilus [TaxId: 1397]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Bacillus circulans, subsp. alkalophilus [TaxId: 1397]
Probab=99.54 E-value=3.1e-13 Score=150.35 Aligned_cols=320 Identities=12% Similarity=0.049 Sum_probs=182.1
Q ss_pred CCCCCCCCCcHHHHHHHHhCCccccccC--CCh-hh---HhhhHHHHHHHHHHHHHHhcCCCCc-ceeeccch-HHHHHH
Q 001989 172 GMGYYNTHVPPVILRNIMENPAWYTQYT--PYQ-AE---IAQGRLESLLNFQTMIADLTGLPMS-NASLLDEG-TAAAEA 243 (985)
Q Consensus 172 G~g~y~~~~p~~v~~~i~~~~~~~t~~~--pyq-~e---~sqg~l~~i~e~q~~ia~L~g~~~~-~~sl~~~~-ta~~ea 243 (985)
|.| |..+|..|.+++.. + +..|. +-. .+ .++-..+.+.+.++.+++++|.+.. .+.++.|+ |++.++
T Consensus 8 ~pG--P~~vp~~V~eam~~-~--~~~~~~~~~~~~~~sHRs~ef~~~~~~~r~~l~~l~~~~~~~~i~~~~gs~t~~~ea 82 (361)
T d2c0ra1 8 NAG--PAALPLEVLERAQA-E--FVDYQHTGMSIMEMSHRGAVYEAVHNEAQARLLALLGNPTGYKVLFIQGGASTQFAM 82 (361)
T ss_dssp CSS--SCCCCHHHHHHHHH-T--SSSSTTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHTTCCSSEEEEEESSHHHHHHHH
T ss_pred CCC--CcCCCHHHHHHHHH-H--HhhhcccCccccccCcCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCchHHHHH
Confidence 677 66788888766543 2 11210 000 01 1455678999999999999999755 45555555 445555
Q ss_pred HHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc--------hhhhc-cCCCEeEEEEEcCCCCeeecc
Q 001989 244 MAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL--------KDIDY-KSGDVCGVLVQYPGTEGEVLD 314 (985)
Q Consensus 244 ~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~--------~~l~~-l~~~t~~V~v~~pn~~G~v~d 314 (985)
+...+ .++++++++-. |.++...|...++..|.+++.+.. +++++ +..++ .+.++ |.+|.+.|
T Consensus 83 ~~~~l---~~~~~~~l~~~--~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~--~~tg~~~~ 154 (361)
T d2c0ra1 83 IPMNF---LKEGQTANYVM--TGSWASKALKEAKLIGDTHVAASSEASNYMTLPKLQEIQLQDN-AAYLH--LTSNETIE 154 (361)
T ss_dssp HHHHH---CCTTCEEEEEE--CSHHHHHHHHHHHHHSCEEEEEECGGGTTCSCCCGGGCCCCTT-EEEEE--EESEETTT
T ss_pred HHhcc---ccCCCceEEEe--echhhhhhhhhhhhcCceeeeeccccccccchhhhhhhcccCc-ceEEE--Eeccccee
Confidence 44433 23667765443 555566666666677888777643 23444 33332 23333 47899999
Q ss_pred HHHHHHHHHhCCcEEEEEecCccccCC-CCCCcccceEEEecCccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeec
Q 001989 315 YGDFIKNAHANGVKVVMATDLLALTIL-KPPGELGADIVVGSAQRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSID 393 (985)
Q Consensus 315 i~~I~~~a~~~galliV~a~~~~lg~l-~~~~~~GaDi~v~s~k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d 393 (985)
+.+|.++||++|++++||+ ..++|.. .+..+|++|++ ++|+..+| +|+++++..++++.+ .+.....
T Consensus 155 ~~~i~~~~~~~~al~~vDa-vss~g~~~id~~~~di~~~--s~~k~~~~----~~~~~~~~~~~~~~~-~~~~~~~---- 222 (361)
T d2c0ra1 155 GAQFKAFPDTGSVPLIGDM-SSDILSRPFDLNQFGLVYA--GAQKNLGP----SGVTVVIVREDLVAE-SPKHLPT---- 222 (361)
T ss_dssp TEECSSCCCCTTSCEEEEC-TTTTTSSCCCGGGCSEEEE--ETTTTTCC----SSCEEEEEEGGGSSS-CCTTSCG----
T ss_pred cceEEEeeccCCceEEEEe-eccccccccccccceeEEE--eccccccc----ccCcEEEEEhHHhhh-Ccccccc----
Confidence 9999999999999999964 3455544 34466766654 45443222 234455555544433 2221100
Q ss_pred CCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCC-eEEcCC
Q 001989 394 SSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGT-VEVQGL 472 (985)
Q Consensus 394 ~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~-~~~~~~ 472 (985)
...+....+.. ....+.+. +.......+.. ......+.....++.......+.......+. ......
T Consensus 223 -------~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (361)
T d2c0ra1 223 -------MLRYDTYVKNN-SLYNTPPS--FGIYMVNEVLK--WIEERGGLEGVQQANRKKASLIYDAIDQSGGFYRGCVD 290 (361)
T ss_dssp -------GGCHHHHHHTT-TCSSCCCH--HHHHHHHHHHH--HHHHTTHHHHHHHHHHHHHHHHHHHHHTSTTSSEESSC
T ss_pred -------ccccccccccc-cccccccc--eeeehhhhHHH--hhhhccchHHHHHHHHHHHHHhhhhhhhcccccccCCC
Confidence 00110000111 11122222 12222222222 2233345556666666666666666665431 222221
Q ss_pred --CCcc-eEEEecCC---HHHHHHHHHHcCceeeeec--CCeEEEEeccCCCHHHHHHHHHHHh
Q 001989 473 --PFFD-TVKVKCAD---AHAIASAAYKIEMNLRVVD--SNTVTASFDETTTLEDVDKLFIVFA 528 (985)
Q Consensus 473 --~~~~-~~~~~~~~---~~~v~~~L~~~GI~~~~~~--~~~lris~t~~~t~edId~li~aL~ 528 (985)
...+ .++|..++ +.++.+.|.++||.++.-. -+.+|||...++|.|||++|+++|+
T Consensus 291 ~~~rS~~~~~~~~~~~~~~~~~~~~L~~~GI~~~~G~~~~g~~RIs~~~~~~~edv~~Lv~~l~ 354 (361)
T d2c0ra1 291 VDSRSDMNITFRLASEELEKEFVKASEQEGFVGLKGHRSVGGLRASIYNAVPYESCEALVQFME 354 (361)
T ss_dssp GGGBCSSEEEEECSCHHHHHHHHHHHHHTTEESCBCCTTTCSEEEECCTTSCHHHHHHHHHHHH
T ss_pred hhhccceEEEEECCCcccHHHHHHHHHHCCCEEecCCCcCCeEEEEecCCCCHHHHHHHHHHHH
Confidence 1222 46677765 7899999999999875421 1459999999999999999999997
|
| >d1b9ha_ c.67.1.4 (A:) 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase) {Amycolatopsis mediterranei [TaxId: 33910]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase) species: Amycolatopsis mediterranei [TaxId: 33910]
Probab=99.52 E-value=3.7e-13 Score=151.24 Aligned_cols=305 Identities=14% Similarity=0.128 Sum_probs=183.6
Q ss_pred HHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcCCC-C
Q 001989 634 FNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDA-K 712 (985)
Q Consensus 634 ~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~d~-~ 712 (985)
+.++|+.+++++|.+.+ +.++||+.|.+.+++++ +.+++|+||+|...+.+...+....|++++.+++++ +
T Consensus 36 v~~fE~~~a~~~g~~~~-v~~~SGt~Al~lal~~l-------~~~~gdeVi~p~~t~~a~~~ai~~~g~~p~~~d~~~~~ 107 (384)
T d1b9ha_ 36 VNSFEREFAAHHGAAHA-LAVTNGTHALELALQVM-------GVGPGTEVIVPAFTFISSSQAAQRLGAVTVPVDVDAAT 107 (384)
T ss_dssp HHHHHHHHHHHTTCSEE-EEESCHHHHHHHHHHHT-------TCCTTCEEEEESSSCTHHHHHHHHTTCEEEEECBCTTT
T ss_pred HHHHHHHHHHHHCcCeE-EEeCCHHHHHHHHHHHc-------CCCCCCEEEEeccccccccccccccccccccccccccc
Confidence 45788999999999886 56778998886666543 235789999999877777777888999999999876 4
Q ss_pred CCCCHHHHHHHHHhcCCCEEEEEEEcCCCccccccCHHHHHHHHHHcCCEEEEEccccccccCC-CCCCccCCcEEEeCC
Q 001989 713 GNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGL-TSPGYIGADVCHLNL 791 (985)
Q Consensus 713 g~iD~e~L~~~i~~~~~~t~~Vvv~~pn~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l-~~pg~~g~Di~~~s~ 791 (985)
+.+|++.++++++ ++|++|++++ ..|... |+++|.++|+++|++++.|+||+.+.-.- ..+|.+| |+.++|+
T Consensus 108 ~~~d~~~~~~~i~---~~tk~i~~~~--~~g~~~-d~~~i~~~~~~~~i~lieD~a~a~ga~~~g~~~g~~g-~~~~~Sf 180 (384)
T d1b9ha_ 108 YNLDPEAVAAAVT---PRTKVIMPVH--MAGLMA-DMDALAKISADTGVPLLQDAAHAHGARWQGKRVGELD-SIATFSF 180 (384)
T ss_dssp CCBCHHHHHHHCC---TTEEEECCBC--GGGCCC-CHHHHHHHHHHHTCCBCEECTTCTTCEETTEEGGGSS-SCEEEEC
T ss_pred cccchhhhccccc---cccccccccc--cccccc-ccccchhhhhhhhhhhhhhhceecccccCCEecCccc-ccceecc
Confidence 8899999999998 8999988754 567776 89999999999999999999985432111 1234443 5555554
Q ss_pred --cccccccCCCCCCceEEEEEc-ccccCcCCCC-ccccC--CCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcH
Q 001989 792 --HKTFCIPHGGGGPGMGPIGVK-KHLAPFLPSH-PVVST--GGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGS 865 (985)
Q Consensus 792 --hK~l~~p~g~GGPg~G~i~~~-~~l~~~lp~~-~~g~~--~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~ 865 (985)
.|.++ .| .+|+++++ +++..++... ..|.. .+..++.......+... ....++.++.-|
T Consensus 181 ~~~K~i~----~g--~GG~i~t~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~G~n~rm----s~l~Aaig~~qL----- 245 (384)
T d1b9ha_ 181 QNGKLMT----AG--EGGAVVFPDGETEKYETAFLRHSCGRPRDDRRYFHKIAGSNMRL----NEFSASVLRAQL----- 245 (384)
T ss_dssp CTTSSSC----SS--SCEEEEECTTCHHHHHHHHHHTBTTCCTTCSSCCCCSCCCBCBC----BHHHHHHHHHHH-----
T ss_pred ccccccc----cc--ccchhhhhhHHHHHHHHHHHhcCCCCcccccccccccccccccc----ccchhhhhhhhh-----
Confidence 56553 22 24666665 4443322100 00110 00000000000011110 112122222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCeeecC----CCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCCC--
Q 001989 866 KGLTEASKIAILNANYMAKRLEKHYPILFRG----VNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSW-- 939 (985)
Q Consensus 866 eGl~~~~~~~~~~a~~l~~~L~~g~~l~~~~----~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~~-- 939 (985)
+.+.+..++..++++++.+.|++...+.... ......+.+++.++.. ....-+++.+.|.++||.+.....
T Consensus 246 ~~ld~~~~~R~~~~~~y~~~L~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~---~~~~Rd~l~~~L~~~GI~~~~~y~pl 322 (384)
T d1b9ha_ 246 ARLDEQIAVRDERWTLLSRLLGAIDGVVPQGGDVRADRNSHYMAMFRIPGL---TEERRNALVDRLVEAGLPAFAAFRAI 322 (384)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHTSTTCEECCCCTTCCBCCCSEEEEECTTC---CHHHHHHHHHHHHHTTCCEEECCCCG
T ss_pred hhcccchhhhhhhhhhhhhhhhcccccccccccccccccccccccceeccc---ccccHHHHHHHHHHCCCCeeeeCcch
Confidence 3355556666778888989887632221111 0111122234444310 001134699999999997532111
Q ss_pred -----------------------C-----CCCEEEEeccCCCC-HHHHHHHHccCChhHHHHh
Q 001989 940 -----------------------P-----VPGTLMIEPTESES-KSWTGIVMLSSPSEKKLHR 973 (985)
Q Consensus 940 -----------------------p-----~~~~lris~t~~~t-~eeId~~~~~~~l~~~~~~ 973 (985)
| ....+.+-.....| ++||++ .+++|++++++
T Consensus 323 h~~~~~~~~~~~~~~~~~~~~~~Pna~~l~~~~l~LP~~~~Lt~e~ei~~--I~~~i~~~l~~ 383 (384)
T d1b9ha_ 323 YRTDAFWELGAPDESVDAIARRCPNTDAISSDCVWLHHRVLLAGEPELHA--TAEIIADAVAR 383 (384)
T ss_dssp GGSHHHHHSSCCSSCHHHHHHTCHHHHHHHHHEEEEEGGGGGSCHHHHHH--HHHHHHHHHHH
T ss_pred hcCHHHHhcCCCcccccccccCCHHHHHHHhCEEEccCCCCCCCHHHHHH--HHHHHHHHHhh
Confidence 1 01346665555556 679999 88888888875
|
| >d1w7la_ c.67.1.1 (A:) Kynurenine--oxoglutarate transaminase I {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Kynurenine--oxoglutarate transaminase I species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.52 E-value=4.5e-14 Score=160.75 Aligned_cols=337 Identities=14% Similarity=0.122 Sum_probs=197.3
Q ss_pred cccccccccCCCccccccc-----cccccccccCCCCchhhhhhHHHHHHHHHHHHHHHhCCCc---cceecCcHH-HHH
Q 001989 591 MIPLGSCTMKLNATTEMMP-----VTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFDS---FSLQPNAGA-AGE 661 (985)
Q Consensus 591 ~~~lG~~t~~~~~~~~~~~-----~~~~~f~~~~p~~p~e~~~G~~~~~~e~~~~la~l~G~~~---~~~~~~sGa-~a~ 661 (985)
+|.||.|.|.+++...... +..+... +.|.| .+|..++.+.+.+++.+.+|.+. .++..++|+ +|.
T Consensus 27 vI~l~~G~p~~~~p~~v~~a~~~al~~~~~~--~~Y~~---~~G~~~LReaia~~~~~~~g~~~~~~~~I~it~G~~~al 101 (418)
T d1w7la_ 27 VVNLGQGFPDFPPPDFAVEAFQHAVSGDFML--NQYTK---TFGYPPLTKILASFFGELLGQEIDPLRNVLVTVGGYGAL 101 (418)
T ss_dssp CEECCCCSCSSCCCHHHHHHHHHHTSSCGGG--GSCCC---TTCCHHHHHHHHHHHHHHHTCCCCHHHHEEEESHHHHHH
T ss_pred CEECCCCCCCCCCCHHHHHHHHHHHhCCCcc--cCCCC---CcCCHHHHHHHHHHHHHHhCCCCCcccceeeccCcHHHH
Confidence 6788888777665322211 1122211 22333 46888888888888888888763 345555554 444
Q ss_pred HHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcCCC------------CCCCCHHHHHHHHHhcCC
Q 001989 662 YAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDA------------KGNINIEELRKAAEANRD 729 (985)
Q Consensus 662 ~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~d~------------~g~iD~e~L~~~i~~~~~ 729 (985)
..+ ++.+ ..+++.|+++++.++.+...+...|.+++.++.++ ++.+|.+++....+ +
T Consensus 102 ~~~---~~~l-----~~~g~~vlv~~p~~~~y~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~---~ 170 (418)
T d1w7la_ 102 FTA---FQAL-----VDEGDEVIIIEPFFDCYEPMTMMAGGRPVFVSLKPGPIQNGELGSSSNWQLDPMELAGKFT---S 170 (418)
T ss_dssp HHH---HHHH-----CCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECEECC---CCSEEGGGEECCHHHHHHHCC---T
T ss_pred HHH---HHhh-----ccCCceeeccccccchhHHHHHHcCCEeeccccccccccccccccccCcccchhhhhcccc---c
Confidence 333 3332 14789999998888788888899999998887642 24577877777665 8
Q ss_pred CEEEEEEEcCC-Cccccc--cCHHHHHHHHHHcCCEEEEEccccccc-cCC--CC----CCccCCcEEEeCCcccccccC
Q 001989 730 NLSTLMVTYPS-THGVYE--EGIDEICKIIHDNGGQVYMDGANMNAQ-VGL--TS----PGYIGADVCHLNLHKTFCIPH 799 (985)
Q Consensus 730 ~t~~Vvv~~pn-~~G~i~--~di~eI~~la~~~galliVD~a~~~~~-~~l--~~----pg~~g~Di~~~s~hK~l~~p~ 799 (985)
+++++++.+|+ ++|.+. ..+++|.++|++++++++.|.++..-. .+- .. ++...--+++.|+.|.++.|
T Consensus 171 ~~~~i~~~~p~NPtG~~~s~~~~~~i~~~a~~~~v~vI~De~Y~~l~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~p- 249 (418)
T d1w7la_ 171 RTKALVLNTPNNPLGKVFSREELELVASLCQQHDVVCITDEVYQWMVYDGHQHISIASLPGMWERTLTIGSAGKTFSAT- 249 (418)
T ss_dssp TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHTTCG-
T ss_pred cccceeccCcCCcccccccHHHHHHHHHHHHhcCCCchhhhhhHHhhcCCCCCCCHHHccccccccceecccCccccCC-
Confidence 89999999985 799885 368899999999999999999873211 110 00 11112246778888988654
Q ss_pred CCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHh---cHHHHHHHHHHHH
Q 001989 800 GGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMM---GSKGLTEASKIAI 876 (985)
Q Consensus 800 g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~l---g~eGl~~~~~~~~ 876 (985)
|.++|++++++++...+.... .....+.+ + ..+. .+..++...... ..+-+....+...
T Consensus 250 ---G~RvG~~v~~~~~~~~l~~~~------------~~~~~~~~-~-~~q~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 311 (418)
T d1w7la_ 250 ---GWKVGWVLGPDHIMKHLRTVH------------QNSVFHCP-T-QSQA-AVAESFEREQLLFRQPSSYFVQFPQAMQ 311 (418)
T ss_dssp ---GGCCEEEECCHHHHHHHHHHH------------HTTTSCCC-H-HHHH-HHHHHHHHHHHTTTSTTSHHHHHHHHHH
T ss_pred ---CCcccccccchhhhhhhcccc------------cccccccc-c-hhhH-HHHHHhhhccccccccccccccchhhhh
Confidence 779999999877654432100 00011111 1 1111 111111111111 1123344455567
Q ss_pred HHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCcc-------c-cCCCCHHHHHHHHH-HCCCccCC-CCC------
Q 001989 877 LNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLK-------N-TAGIEPEDVAKRLM-DYGFHGPT-MSW------ 939 (985)
Q Consensus 877 ~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~-------~-~~g~~~~~v~~~L~-~~Gi~~~~-~~~------ 939 (985)
++++++.+.|++ ++.+. .+.+.++ +.++++.+. . .......+++++|. ++||.+.+ ..|
T Consensus 312 ~~r~~l~~~L~~~g~~~~--~P~gg~f--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~PG~~F~~~~~~ 387 (418)
T d1w7la_ 312 RCRDHMIRSLQSVGLKPL--IPQGSYF--LITDISDFKRKMPDLPGAVDEPYDRRFVKWMIKNKGLVAIPVSIFYSVPHQ 387 (418)
T ss_dssp HHHHHHHHHHHTTTCEEE--ECSBSSE--EEEECHHHHHHCCCCCCCTTCCHHHHHHHHHHHHHCEECEEGGGGSCHHHH
T ss_pred hhhhhhhhhhhhcCCccc--CCCceeE--EEEECcccccccchhccccccccHHHHHHHHHHHCCEEEEcchhhcCCCcc
Confidence 778889999987 55443 2334333 334543110 0 00123567777765 46987632 112
Q ss_pred -CCCCEEEEeccCCCCHHHHHHHHccCChhHH
Q 001989 940 -PVPGTLMIEPTESESKSWTGIVMLSSPSEKK 970 (985)
Q Consensus 940 -p~~~~lris~t~~~t~eeId~~~~~~~l~~~ 970 (985)
...+++|||+. .+.+++++ .++.|++.
T Consensus 388 ~~~~~~iRis~~--~~~~~l~~--a~~rl~~~ 415 (418)
T d1w7la_ 388 KHFDHYIRFCFV--KDEATLQA--MDEKLRKW 415 (418)
T ss_dssp TTSCSEEEEECC--CCHHHHHH--HHHHHHHH
T ss_pred CCCCCEEEEEEc--CCHHHHHH--HHHHHHHH
Confidence 13589999974 57777777 55555543
|
| >d1cs1a_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-synthase, CGS species: Escherichia coli [TaxId: 562]
Probab=99.52 E-value=3.8e-13 Score=149.24 Aligned_cols=212 Identities=18% Similarity=0.184 Sum_probs=148.5
Q ss_pred HHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHH----HHHCCcEEEEEcC
Q 001989 634 FNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPAT----AAMCGMKIVSVGT 709 (985)
Q Consensus 634 ~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~----a~~~G~~vv~v~~ 709 (985)
...+++.++++-|.+.+ +.+.||-.|+.++++++. +++++||+++..+|..... ....|+++.+++.
T Consensus 52 ~~~le~~la~LEgg~~a-~~~sSGMaAi~~~l~~l~--------~~gd~vv~~~~~yg~t~~~~~~~~~~~g~~~~~~d~ 122 (384)
T d1cs1a_ 52 RDVVQRALAELEGGAGA-VLTNTGMSAIHLVTTVFL--------KPGDLLVAPHDCYGGSYRLFDSLAKRGCYRVLFVDQ 122 (384)
T ss_dssp HHHHHHHHHHHHTCSEE-EEESSHHHHHHHHHHHHC--------CTTCEEEEETTCCHHHHHHHHHHHTTTSCEEEEECT
T ss_pred HHHHHHHHHHHhCCCce-EEecChHHHHHHHHhhcc--------cccceecccccccchhhhhhhhhhcccccccccccC
Confidence 44688999999998765 445678776655554432 4789999987766543222 3457888888876
Q ss_pred CCCCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCccCCcEEE
Q 001989 710 DAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIGADVCH 788 (985)
Q Consensus 710 d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~g~Di~~ 788 (985)
.|.++++++++ ++|++|+++.| |++.-+. ||++|+++||++|++++||.+- +-..+.+|-++|+||++
T Consensus 123 -----~d~~~~~~~~~---~~t~~v~~EspsNP~l~v~-Di~~i~~ia~~~g~~~vVDNT~--atP~~~~Pl~~GaDiVv 191 (384)
T d1cs1a_ 123 -----GDEQALRAALA---EKPKLVLVESPSNPLLRVV-DIAKICHLAREVGAVSVVDNTF--LSPALQNPLALGADLVL 191 (384)
T ss_dssp -----TCHHHHHHHHH---TCCSEEEEECSCTTTCCCC-CHHHHHHHHHHTTCEEEEECTT--TCTTTCCGGGGTCSEEE
T ss_pred -----CCHHHHHhhcc---ccccEEEEeccccccceec-cHHHHhhhhhhcCcEEEEeccc--cCcccccccccCCCEEE
Confidence 38999999998 89999999998 5666666 8999999999999999999653 33446789999999999
Q ss_pred eCCcccccccCCCCCCceEEEEEcc-cccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHH
Q 001989 789 LNLHKTFCIPHGGGGPGMGPIGVKK-HLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKG 867 (985)
Q Consensus 789 ~s~hK~l~~p~g~GGPg~G~i~~~~-~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eG 867 (985)
.|..|+++ |.|---+|+++.+. .+...+.... ...+...+ + ..||.. .-|-+-
T Consensus 192 hS~TKyi~---Ghsdv~~G~vv~~~~~~~~~~~~~~-------------~~~G~~~~-p-------~~a~ll--~rgL~T 245 (384)
T d1cs1a_ 192 HSCTKYLN---GHSDVVAGVVIAKDPDVVTELAWWA-------------NNIGVTGG-A-------FDSYLL--LRGLRT 245 (384)
T ss_dssp EETTTTTT---CSSCCCCEEEEESSHHHHHHHHHHH-------------HHHTCBCC-H-------HHHHHH--HHHHTT
T ss_pred Eccccccc---cCCCcccccccCCchhhhhhhhhhh-------------hhhhhccc-c-------ccHHHH--hhccch
Confidence 99999985 22223567777654 3322221000 00112211 1 124443 445566
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCC
Q 001989 868 LTEASKIAILNANYMAKRLEKHYP 891 (985)
Q Consensus 868 l~~~~~~~~~~a~~l~~~L~~g~~ 891 (985)
+.-++++..+++..+++.|++...
T Consensus 246 L~lRm~~~~~nA~~lA~~L~~hp~ 269 (384)
T d1cs1a_ 246 LVPRMELAQRNAQAIVKYLQTQPL 269 (384)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCTT
T ss_pred hHHHHHHHHHHHHHHHHhcccCCc
Confidence 788889999999999999987443
|
| >d1mdoa_ c.67.1.4 (A:) Aminotransferase ArnB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Aminotransferase ArnB species: Salmonella typhimurium [TaxId: 90371]
Probab=99.52 E-value=2.4e-13 Score=151.97 Aligned_cols=288 Identities=13% Similarity=0.124 Sum_probs=183.5
Q ss_pred HHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc----
Q 001989 213 LLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL---- 288 (985)
Q Consensus 213 i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~---- 288 (985)
+.++++.+|+++|.+. +..+++||+|..+++.++.+. +||+|+++...|+++..++.. .|.+++++|.
T Consensus 33 v~~~E~~la~~~g~~~--ai~~~sgt~Al~~al~al~~~--~gdeVi~~~~~~~~~~~ai~~----~g~~pv~~d~~~~~ 104 (376)
T d1mdoa_ 33 NQELEAAFCRLTGNQY--AVAVSSATAGMHIALMALGIG--EGDEVITPSMTWVSTLNMIVL----LGANPVMVDVDRDT 104 (376)
T ss_dssp HHHHHHHHHHHHCCSE--EEEESCHHHHHHHHHHHTTCC--TTCEEEEESSSCHHHHHHHHH----TTCEEEEECBCTTT
T ss_pred HHHHHHHHHHHHCcCe--EEEeCCHHHHHHHHHHHhCCC--CCCEEEEecccccccccchhc----cccceeeecccccc
Confidence 4568899999999864 778889999988888876554 899999999999999999864 4778888754
Q ss_pred -----hhhhc-cCCCEeEEEEEcCCCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCC---CCCcccceEEEecC-cc
Q 001989 289 -----KDIDY-KSGDVCGVLVQYPGTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILK---PPGELGADIVVGSA-QR 358 (985)
Q Consensus 289 -----~~l~~-l~~~t~~V~v~~pn~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~---~~~~~GaDi~v~s~-k~ 358 (985)
++|++ ++++|++|+++| .+|...|+++|.++|+++|++++.|+ .+++|... ..+.+|..+..+.. |.
T Consensus 105 ~~~d~~~l~~~i~~~tkaIi~~h--~~G~~~~~~~i~~i~~~~~i~vIeD~-a~a~g~~~~~~~~g~~g~~~~Sf~~~K~ 181 (376)
T d1mdoa_ 105 LMVTPEHIEAAITPQTKAIIPVH--YAGAPADLDAIYALGERYGIPVIEDA-AHATGTSYKGRHIGARGTAIFSFHAIKN 181 (376)
T ss_dssp CCBCHHHHHHHCCTTEEEECCBC--GGGCCCCHHHHHHHHHHHTCCBCEEC-TTCTTCEETTEETTSSSEEEEECCTTSS
T ss_pred cCCCHHHHHHhcCCCCeEEEEeC--CCCCccchhHHHHHHHhcCceEEecc-chhccCeeCCeecccccCccccCCCcCC
Confidence 45777 889999999876 78999999999999999999999954 45666431 23667765554555 76
Q ss_pred ccccCCCCCCcEEEEEEch-hhHhcCC-CceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHHH
Q 001989 359 FGVPMGYGGPHAAFLATSQ-EYKRMMP-GRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAV 436 (985)
Q Consensus 359 lg~P~~~GGP~~G~l~~~~-~~~~~lp-~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~ 436 (985)
++. | ..|++.+++ ++.+++. -+-.|+........ ... . .....-...+ .|.--+ .+.|++.+.
T Consensus 182 l~~----g--~GG~i~t~~~~l~~~~~~~~~~g~~~~~~~~~-~~~-~--~~~~~~~~~g-~n~~~~----~~~Aai~~~ 246 (376)
T d1mdoa_ 182 ITC----A--EGGIVVTDNPQFADKLRSLKFHGLGVDAWDRQ-SGG-R--APQAEVLAPG-YKYNLP----DLNAAIALA 246 (376)
T ss_dssp SCS----S--SCEEEEESCHHHHHHHHHHTBTTEECC---------------CCEESSCC-CBCCCC----HHHHHHHHH
T ss_pred CCC----C--CCCEEEEechhHHHHHHhhcccCCcccccccc-ccc-c--cccccchhcc-cccccc----hhhhhhhhh
Confidence 642 2 236666764 3433321 11122211100000 000 0 0000000111 122111 122333222
Q ss_pred HhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCC-----CCcceEEEecCC------HHHHHHHHHHcCceeeee---
Q 001989 437 YHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGL-----PFFDTVKVKCAD------AHAIASAAYKIEMNLRVV--- 502 (985)
Q Consensus 437 ~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~-----~~~~~~~~~~~~------~~~v~~~L~~~GI~~~~~--- 502 (985)
.+ +.++++.++..++++++.+.|+++....+... .....+.+..+. -.++.+.|.++||.++..
T Consensus 247 qL--~~~~~~~~~r~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rd~l~~~L~~~gI~~~~~y~~ 324 (376)
T d1mdoa_ 247 QL--QKLDALNARRAAIAAQYHQAMADLPFQPLSLPSWEHIHAWHLFIIRVDEARCGITRDALMASLKTKGIGTGLHFRA 324 (376)
T ss_dssp HH--HTHHHHHHHHHHHHHHHHHHHHTSSCEECCCCSSCEECCCSCEEEECCHHHHSSCHHHHHHHHHHTTBCCBCCCCC
T ss_pred hh--hhhhHHHHHHhhhhhhhhhhcccccccccccccccccccccccccccccccchhhHHHHHHHHHHCCCCeeeECcc
Confidence 22 35677888889999999999999863444321 112234443332 357999999999965311
Q ss_pred ----------------------cCCeEEEEeccCCCHHHHHHHHHHHh
Q 001989 503 ----------------------DSNTVTASFDETTTLEDVDKLFIVFA 528 (985)
Q Consensus 503 ----------------------~~~~lris~t~~~t~edId~li~aL~ 528 (985)
....+.+-++..-|++||++++++|.
T Consensus 325 ~~~~~~~~~~~~~~~~p~a~~~~~~~i~LP~~~~lt~~ei~~I~~~i~ 372 (376)
T d1mdoa_ 325 AHTQKYYRERFPTLTLPDTEWNSERICSLPLFPDMTESDFDRVITALH 372 (376)
T ss_dssp GGGSHHHHHHSTTCCCHHHHHHHTTEEEECCCTTCCHHHHHHHHHHHH
T ss_pred hhcCHHHHhhCCCCCCHHHHHHHhCEEEccCCCCCCHHHHHHHHHHHH
Confidence 02446776777889999999999986
|
| >d1ibja_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine beta-lyase, CBL species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.52 E-value=1e-12 Score=145.75 Aligned_cols=209 Identities=19% Similarity=0.182 Sum_probs=149.2
Q ss_pred HHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHH----HHCCcEEEEEcC
Q 001989 634 FNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATA----AMCGMKIVSVGT 709 (985)
Q Consensus 634 ~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a----~~~G~~vv~v~~ 709 (985)
...+++.++++-|.+.+ +.+.||-.|+ ++++++ .++|++||+++..+|...... ...|+++..++.
T Consensus 51 ~~~le~~la~LE~~~~a-~~fsSGMaAi-sall~l--------l~~Gd~vv~~~~~Yg~t~~l~~~~~~~~gi~~~~~d~ 120 (380)
T d1ibja_ 51 RDALESLLAKLDKADRA-FCFTSGMAAL-SAVTHL--------IKNGEEIVAGDDVYGGSDRLLSQVVPRSGVVVKRVNT 120 (380)
T ss_dssp HHHHHHHHHHHHTCSEE-EEESSHHHHH-HHHHTT--------SCTTCEEEEESSCCHHHHHHHHHTSGGGTCEEEEECT
T ss_pred HHHHHHHHHHHcCCceE-EehhhHHHHH-HHHHHh--------hCCCCEEEEEecccccccchhhhhhccccccccccCc
Confidence 45788999999998765 4456787665 444322 147899999888777554443 357999998886
Q ss_pred CCCCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCccCCcEEE
Q 001989 710 DAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIGADVCH 788 (985)
Q Consensus 710 d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~g~Di~~ 788 (985)
+ |+++++++++ ++|++|+++.| |++.-+. ||++|+++||++|++++||.+. +-..+.+|-++|+|+++
T Consensus 121 ~-----~~~~~~~ai~---~~t~li~~EtpsNP~l~v~-Di~~i~~iA~~~g~~~vVDnT~--atP~~~~Pl~~GaDiVv 189 (380)
T d1ibja_ 121 T-----KLDEVAAAIG---PQTKLVWLESPTNPRQQIS-DIRKISEMAHAQGALVLVDNSI--MSPVLSRPLELGADIVM 189 (380)
T ss_dssp T-----SHHHHHHHCC---SSEEEEEECSSCTTTCCCC-CHHHHHHHHHTTTCEEEEECTT--TCTTTCCGGGTTCSEEE
T ss_pred c-----hHHHHHHHhc---cCccEEEeccccccccccc-cHHHHHHHHHHcCCeEEeeccc--cccccccccccCCCEEE
Confidence 4 8999999997 89999999998 5777776 9999999999999999999764 33445689999999999
Q ss_pred eCCcccccccCCCCCCceEEEEEccc-ccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHH
Q 001989 789 LNLHKTFCIPHGGGGPGMGPIGVKKH-LAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKG 867 (985)
Q Consensus 789 ~s~hK~l~~p~g~GGPg~G~i~~~~~-l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eG 867 (985)
.|..|+++ |.+-..+|.++++.+ +...+.... +..+...+ + ..||. ..-|-+.
T Consensus 190 hS~TKyi~---GhsDv~~G~v~~~~~~~~~~~~~~~-------------~~~G~~l~-----p---~~a~l--l~rgl~T 243 (380)
T d1ibja_ 190 HSATKFIA---GHSDVMAGVLAVKGEKLAKEVYFLQ-------------NSEGSGLA-----P---FDCWL--CLRGIKT 243 (380)
T ss_dssp EETTTTTT---CSSCCCCEEEEECSHHHHHHHHHHH-------------HHTTCBCC-----H---HHHHH--HHHHHTT
T ss_pred ecccceec---cccCccccccccchhhHHHHHHhhc-------------cccCCcCC-----H---HHHHH--HHhcchh
Confidence 99999996 223346677777743 333221100 01112221 1 12344 4445567
Q ss_pred HHHHHHHHHHHHHHHHHHhhcc
Q 001989 868 LTEASKIAILNANYMAKRLEKH 889 (985)
Q Consensus 868 l~~~~~~~~~~a~~l~~~L~~g 889 (985)
+..++++..+++..+++.|++.
T Consensus 244 l~lRm~~~~~nA~~lA~~L~~h 265 (380)
T d1ibja_ 244 MALRIEKQQENARKIAMYLSSH 265 (380)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTC
T ss_pred hhhhHHHHHHHHHHHHHHHHhC
Confidence 8888999999999999999874
|
| >d2c0ra1 c.67.1.4 (A:2-362) Phosphoserine aminotransferase, PSAT {Bacillus circulans, subsp. alkalophilus [TaxId: 1397]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Bacillus circulans, subsp. alkalophilus [TaxId: 1397]
Probab=99.51 E-value=2.5e-14 Score=159.38 Aligned_cols=305 Identities=11% Similarity=0.002 Sum_probs=169.6
Q ss_pred hhHHHHHHHHHHHHHHHhCCCcc--cee-cCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHH----HHHHC
Q 001989 628 QGYQEMFNNLGEWLCTITGFDSF--SLQ-PNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPA----TAAMC 700 (985)
Q Consensus 628 ~G~~~~~~e~~~~la~l~G~~~~--~~~-~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~----~a~~~ 700 (985)
+-+.++++++++.|++++|.+.. .++ .++|+.+++++...+ ..+++++++.. ||.+.. .++..
T Consensus 44 ~ef~~~~~~~r~~l~~l~~~~~~~~i~~~~gs~t~~~ea~~~~l--------~~~~~~~l~~~--~g~~~~~~~~~~~~~ 113 (361)
T d2c0ra1 44 AVYEAVHNEAQARLLALLGNPTGYKVLFIQGGASTQFAMIPMNF--------LKEGQTANYVM--TGSWASKALKEAKLI 113 (361)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCSSEEEEEESSHHHHHHHHHHHHH--------CCTTCEEEEEE--CSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHhcc--------ccCCCceEEEe--echhhhhhhhhhhhc
Confidence 45678899999999999999753 233 344444443332211 13456666543 344432 25678
Q ss_pred CcEEEEEcCCCCCCCCHHHHHHHHHhcCCCEEEEEEEcCCCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCC
Q 001989 701 GMKIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPG 780 (985)
Q Consensus 701 G~~vv~v~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~pn~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg 780 (985)
|.+++.++.++...+|++++++.+. .++ .+.++ |++|... ++++|.++||++|++++||++++++...+ +..
T Consensus 114 g~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~v~--~~tg~~~-~~~~i~~~~~~~~al~~vDavss~g~~~i-d~~ 185 (361)
T d2c0ra1 114 GDTHVAASSEASNYMTLPKLQEIQL---QDN-AAYLH--LTSNETI-EGAQFKAFPDTGSVPLIGDMSSDILSRPF-DLN 185 (361)
T ss_dssp SCEEEEEECGGGTTCSCCCGGGCCC---CTT-EEEEE--EESEETT-TTEECSSCCCCTTSCEEEECTTTTTSSCC-CGG
T ss_pred Cceeeeeccccccccchhhhhhhcc---cCc-ceEEE--Eecccce-ecceEEEeeccCCceEEEEeecccccccc-ccc
Confidence 9999999887778888888887765 333 23333 3678888 89999999999999999999986544332 334
Q ss_pred ccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCC-CCCCCCCCCCCCCCcchhhhHHHHHHHHH
Q 001989 781 YIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGI-PAPEKSQPLGTIAAAPWGSALILPISYTY 859 (985)
Q Consensus 781 ~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~-~~~~~~~~~~~i~s~~~g~~~~~~~a~a~ 859 (985)
++ |+.++++||.++. +|+.++++..+.+....+.......-.. ........+.+.. ....+..+.+.
T Consensus 186 ~~--di~~~s~~k~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~ 253 (361)
T d2c0ra1 186 QF--GLVYAGAQKNLGP-----SGVTVVIVREDLVAESPKHLPTMLRYDTYVKNNSLYNTPPSF-----GIYMVNEVLKW 253 (361)
T ss_dssp GC--SEEEEETTTTTCC-----SSCEEEEEEGGGSSSCCTTSCGGGCHHHHHHTTTCSSCCCHH-----HHHHHHHHHHH
T ss_pred cc--eeEEEeccccccc-----ccCcEEEEEhHHhhhCccccccccccccccccccccccccce-----eeehhhhHHHh
Confidence 44 5556667888742 2344555545444333221111100000 0000011111111 11112222222
Q ss_pred HHHhcHHHHHHHHHHHHHHHHHHHHHhhc-c-CCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCC
Q 001989 860 IAMMGSKGLTEASKIAILNANYMAKRLEK-H-YPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTM 937 (985)
Q Consensus 860 l~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g-~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~ 937 (985)
....+ +.....++....+..+...... . .......+.......+++.++ .+.+..++.+.|.++||.+..-
T Consensus 254 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rS~~~~~~~~~-----~~~~~~~~~~~L~~~GI~~~~G 326 (361)
T d2c0ra1 254 IEERG--GLEGVQQANRKKASLIYDAIDQSGGFYRGCVDVDSRSDMNITFRLA-----SEELEKEFVKASEQEGFVGLKG 326 (361)
T ss_dssp HHHTT--HHHHHHHHHHHHHHHHHHHHHTSTTSSEESSCGGGBCSSEEEEECS-----CHHHHHHHHHHHHHTTEESCBC
T ss_pred hhhcc--chHHHHHHHHHHHHHhhhhhhhcccccccCCChhhccceEEEEECC-----CcccHHHHHHHHHHCCCEEecC
Confidence 22222 2233333444444445444443 2 111111111111112445543 2456789999999999987532
Q ss_pred CCCCCCEEEEeccCCCCHHHHHHHHccCChhHHHH
Q 001989 938 SWPVPGTLMIEPTESESKSWTGIVMLSSPSEKKLH 972 (985)
Q Consensus 938 ~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~ 972 (985)
++.-+.+||+...++|.|||++ +++.|++..+
T Consensus 327 -~~~~g~~RIs~~~~~~~edv~~--Lv~~l~~~~~ 358 (361)
T d2c0ra1 327 -HRSVGGLRASIYNAVPYESCEA--LVQFMEHFKR 358 (361)
T ss_dssp -CTTTCSEEEECCTTSCHHHHHH--HHHHHHHHHH
T ss_pred -CCcCCeEEEEecCCCCHHHHHH--HHHHHHHHHH
Confidence 2212469999999999999999 7788877443
|
| >d1w23a_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Bacillus alcalophilus [TaxId: 1445]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Bacillus alcalophilus [TaxId: 1445]
Probab=99.51 E-value=2.8e-13 Score=150.40 Aligned_cols=323 Identities=10% Similarity=-0.018 Sum_probs=175.8
Q ss_pred CCCCCCCCCcHHHHHHHHhCCcccccc---CCChhhH---hhhHHHHHHHHHHHHHHhcCCCCcc-eeeccchHHHHHHH
Q 001989 172 GMGYYNTHVPPVILRNIMENPAWYTQY---TPYQAEI---AQGRLESLLNFQTMIADLTGLPMSN-ASLLDEGTAAAEAM 244 (985)
Q Consensus 172 G~g~y~~~~p~~v~~~i~~~~~~~t~~---~pyq~e~---sqg~l~~i~e~q~~ia~L~g~~~~~-~sl~~~~ta~~ea~ 244 (985)
+.| |..+|+.|.+++.. +. ..| ..+..++ ++--.+.+.+.++.|++|+|++..+ +.+..|++.++..+
T Consensus 8 ~pG--P~~~p~~V~~a~~~-~~--~~~~~~~~~~~~~sHRs~~~~~~~~~~r~~l~~l~~~~~~~~i~~~~gt~~~~~~~ 82 (360)
T d1w23a_ 8 NAG--PSALPKPALERAQK-EL--LNFNDTQMSVMELSHRSQSYEEVHEQAQNLLRELLQIPNDYQILFLQGGASLQFTM 82 (360)
T ss_dssp CSS--SCCCCHHHHHHHHH-TS--SSSTTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHH
T ss_pred CCC--CcCCCHHHHHHHHH-HH--HhhcccCccccccCcCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHH
Confidence 455 45688888755443 32 122 1111121 4445678899999999999998764 44555555444333
Q ss_pred HHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCch--------hhhccCCCEeEEEEEcCCCCeeeccHH
Q 001989 245 AMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDLK--------DIDYKSGDVCGVLVQYPGTEGEVLDYG 316 (985)
Q Consensus 245 ~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~~--------~l~~l~~~t~~V~v~~pn~~G~v~di~ 316 (985)
..... .+++++|++....|.. ...+.. ++..+..++....+ +++........+.+ .|.+|.+.|++
T Consensus 83 ~~~~~--~~~~~~v~~~~~g~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~tg~~~~~~ 156 (360)
T d1w23a_ 83 LPMNL--LTKGTIGNYVLTGSWS-EKALKE-AKLLGETHIAASTKANSYQSIPDFSEFQLNENDAYL--HITSNNTIYGT 156 (360)
T ss_dssp HHHHH--CCTTCEEEEEECSHHH-HHHHHH-HHTTSEEEEEEECGGGTSCSCCCGGGCCCCTTEEEE--EEESEETTTTE
T ss_pred HHhhh--cccCcccceeeccchh-hhhHHH-HHHhhhcceeeccccccccchhhhhhccccccccee--EecCCccccce
Confidence 32221 2366777665543333 333322 34566666655332 22221111222222 35789999999
Q ss_pred HHHHHHHhCCcEEEEEecCccccCC-CCCCcccceEEEecCccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCC
Q 001989 317 DFIKNAHANGVKVVMATDLLALTIL-KPPGELGADIVVGSAQRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSS 395 (985)
Q Consensus 317 ~I~~~a~~~galliV~a~~~~lg~l-~~~~~~GaDi~v~s~k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~ 395 (985)
+|+++||++|++++||+ ..++|.. .+..+||+|++++++++. ++|++|++..++......+..-.+
T Consensus 157 ~i~~~~~~~g~l~ivDa-vqs~g~~~id~~~~~vd~~~~~~~k~------~~~~~~~~~~~~~~~~~~~~~~~~------ 223 (360)
T d1w23a_ 157 QYQNFPEINHAPLIADM-SSDILSRPLKVNQFGMIYAGAQKNLG------PSGVTVVIVKKDLLNTKVEQVPTM------ 223 (360)
T ss_dssp ECSSCCCCCSSCEEEEC-TTTTTSSCCCGGGCSEEEEETTTTTS------CTTCEEEEEEHHHHCSCCTTCCGG------
T ss_pred eeeeccccceeeEEeec-cccccccccccccccceEEeeccccc------cCCcceeeEechhhhcccccCCcc------
Confidence 99999999999999964 4466544 355889999998877432 234567776666554333211111
Q ss_pred CCcceeeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcC-CCeEEcCC--
Q 001989 396 GKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKL-GTVEVQGL-- 472 (985)
Q Consensus 396 g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~-g~~~~~~~-- 472 (985)
+.... . .+...+.+........+..... ..+....+.....++............... ....+...
T Consensus 224 ----~~~~~--~----~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (360)
T d1w23a_ 224 ----LQYAT--H----IKSDSLYNTPPTFSIYMLRNVL-DWIKDLGGAEAIAKQNEEKAKIIYDTIDESNGFYVGHAEKG 292 (360)
T ss_dssp ----GCHHH--H----HHTTTCSSCCCHHHHHHHHHHH-HHHHHTTHHHHHHHHHHHHHHHHHHHHHTTTTSSEESSCGG
T ss_pred ----hhhhh--h----hhhhhhcccccceeeechhHHH-HHHhhhhhhHHHHHHHHHHHHHHHHHHhhcccccccCCChh
Confidence 00000 0 0011111111112222221111 112222233444444444445544444443 21233322
Q ss_pred CCcc-eEEEecCC---HHHHHHHHHHcCceeeee--cCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 473 PFFD-TVKVKCAD---AHAIASAAYKIEMNLRVV--DSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 473 ~~~~-~~~~~~~~---~~~v~~~L~~~GI~~~~~--~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
.+.+ .++|++++ ..++.+.|.++||.++.- .-+.+|+|+-.++|.||||+|++.+.+
T Consensus 293 ~rS~~vvsf~i~~~~~~~~~~~~l~~~GI~~~~G~~~~ggiRiS~~~~~t~e~V~~Li~~~~~ 355 (360)
T d1w23a_ 293 SRSLMNVTFNLRNEELNQQFLAKAKEQGFVGLNGHRSVGGCRASIYNAVPIDACIALRELMIQ 355 (360)
T ss_dssp GBCSSEEEEECSSHHHHHHHHHHHHHTTEESCBCCTTTCSEEEECCTTSCHHHHHHHHHHHHH
T ss_pred hcceeEEEEEcCCCccHHHHHHHHHHCCCeeeeCCCccCcEEEEeeCCCCHHHHHHHHHHHHH
Confidence 2222 47788865 678999999999987431 114699998778899999999999873
|
| >d1lc5a_ c.67.1.1 (A:) L-threonine-O-3-phosphate decarboxylase CobD {Salmonella enterica [TaxId: 28901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: L-threonine-O-3-phosphate decarboxylase CobD species: Salmonella enterica [TaxId: 28901]
Probab=99.50 E-value=5.4e-12 Score=139.91 Aligned_cols=299 Identities=13% Similarity=0.137 Sum_probs=181.2
Q ss_pred CCCCCCCCCcHHHHHHHHhCCccccccCCChhhHhhhHHHHHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhh
Q 001989 172 GMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQ 251 (985)
Q Consensus 172 G~g~y~~~~p~~v~~~i~~~~~~~t~~~pyq~e~sqg~l~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~ 251 (985)
+.|..|+..|+.+.+.+.++.+-+..| | . +|. .++++.+|+.+|.++.++.+++|++.+...+..+.
T Consensus 28 s~~~np~~~p~~~~~a~~~~~~~~~~Y-p---~--~~~----~~Lr~aia~~~~v~~~~I~~~~g~~~~~~~~~~~~--- 94 (355)
T d1lc5a_ 28 SANINPLGMPVSVKRALIDNLDCIERY-P---D--ADY----FHLHQALARHHQVPASWILAGNGETESIFTVASGL--- 94 (355)
T ss_dssp SSCCCTTCCCHHHHHHHHHTGGGGGSC-C---C--TTC----HHHHHHHHHHHTSCGGGEEEESSHHHHHHHHHHHH---
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhccC-C---C--CCh----HHHHHHHHHHhCCCHHHEEecccHHHHHHHHHhhh---
Confidence 345556667777766666554333444 2 1 111 35778999999999999988888776554433332
Q ss_pred cCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc--h-------hhhc-cCCCEeEEEEEcC-CCCeeec---cHHH
Q 001989 252 KGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL--K-------DIDY-KSGDVCGVLVQYP-GTEGEVL---DYGD 317 (985)
Q Consensus 252 ~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~--~-------~l~~-l~~~t~~V~v~~p-n~~G~v~---di~~ 317 (985)
.++.+++..-.++.+...... .+.++..+++ + ++.+ +.+++++|++++| |.+|.+. ++.+
T Consensus 95 --~~~~~~v~~p~~~~~~~~~~~----~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~l~nP~NPtG~~~~~e~l~~ 168 (355)
T d1lc5a_ 95 --KPRRAMIVTPGFAEYGRALAQ----SGCEIRRWSLREADGWQLTDAILEALTPDLDCLFLCTPNNPTGLLPERPLLQA 168 (355)
T ss_dssp --CCSEEEEEESCCTHHHHHHHH----TTCEEEEEECCGGGTTCCCTTHHHHCCTTCCEEEEESSCTTTCCCCCHHHHHH
T ss_pred --ccccccccCCccceecccccc----ccccceeeeeeccCCccceeeeeeccccccceeeeecccCcccccchhhhhhh
Confidence 334444444445444444322 3445555443 2 2333 6788999999998 7899875 4788
Q ss_pred HHHHHHhCCcEEEEEecCccccCCC-----CCCcccceEEEecC-ccccccCCCCCCcEEEEEEchhhHhcCCCceeeee
Q 001989 318 FIKNAHANGVKVVMATDLLALTILK-----PPGELGADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVS 391 (985)
Q Consensus 318 I~~~a~~~galliV~a~~~~lg~l~-----~~~~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t 391 (985)
|+++|++++++++++.....+.... .....+-.+++.|. |.++.| |--+|+++++++.+..+
T Consensus 169 i~~~a~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~l~----GlR~G~~i~~~~~~~~~-------- 236 (355)
T d1lc5a_ 169 IADRCKSLNINLILDEAFIDFIPHETGFIPALKDNPHIWVLRSLTKFYAIP----GLRLGYLVNSDDAAMAR-------- 236 (355)
T ss_dssp HHHHHHHHTCEEEEECTTGGGSTTCCCSGGGCTTCTTEEEEEESTTTTTCT----TTCCEEEECCCHHHHHH--------
T ss_pred hhhhccccccccccccceeeeeeecccccccccccccceeecccccccccc----cccccceeccchhhhHH--------
Confidence 8899999999999953221221111 11233445777776 877532 33468888765433221
Q ss_pred ecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcC
Q 001989 392 IDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQG 471 (985)
Q Consensus 392 ~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~ 471 (985)
.++...+ ..+ ..+ +..++. ..+...+.+++..++..+..+++.+.|.+++++++..
T Consensus 237 -------------------~~~~~~~-~~~--~~~-~~~~a~-~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p 292 (355)
T d1lc5a_ 237 -------------------MRRQQMP-WSV--NAL-AALAGE-VALQDSAWQQATWHWLREEGARFYQALCQLPLLTVYP 292 (355)
T ss_dssp -------------------HHHHSCT-TCS--CHH-HHHHHH-HGGGCHHHHHHHHHHHHHHHHHHHHHHHTSTTEEECC
T ss_pred -------------------HHhhcCC-ccc--ccc-cccccc-ccccccchhHHHHHHHHHHHHHHHHHHhhcCCcEECC
Confidence 0011111 111 111 111221 1233344566777788888899999999986588753
Q ss_pred CCCcceEEEecCC-HHHHHHHHHHcCceeeee------cCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 472 LPFFDTVKVKCAD-AHAIASAAYKIEMNLRVV------DSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 472 ~~~~~~~~~~~~~-~~~v~~~L~~~GI~~~~~------~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
. ..+-+.++.+. ..++.++|.++||.++.. .++++|+++. +++|+++|+++|++
T Consensus 293 ~-~~~f~~~~~~~~~~~~~~~L~~~gv~vr~~~~f~~~~~~~iRis~~---~~~e~~~li~aL~~ 353 (355)
T d1lc5a_ 293 G-RANYLLLRCEREDIDLQRRLLTQRILIRSCANYPGLDSRYYRVAIR---SAAQNERLLAALRN 353 (355)
T ss_dssp C-SSSEEEEEESCTTCCHHHHHHTTTEECEECTTSTTCCTTEEEEECC---CHHHHHHHHHHHHH
T ss_pred C-CCEEEEEECCCCHHHHHHHHHHCCcEEEeCccCCCCCCCEEEEEeC---CHHHHHHHHHHHHH
Confidence 2 11223455555 677888999999988542 2478999986 79999999999973
|
| >d2fnua1 c.67.1.4 (A:2-372) Spore coat polysaccharide biosynthesis protein C {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Spore coat polysaccharide biosynthesis protein C species: Helicobacter pylori [TaxId: 210]
Probab=99.50 E-value=2.1e-13 Score=152.52 Aligned_cols=309 Identities=11% Similarity=0.015 Sum_probs=184.2
Q ss_pred HHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcCCCCC
Q 001989 634 FNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKG 713 (985)
Q Consensus 634 ~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~d~~g 713 (985)
.+++|+.+++++|.+.+ +.++||+.|.+.+++++.. +..++++||+|...+.+...+....|++++.++++++.
T Consensus 33 v~~fE~~~~~~~g~k~a-i~~~Sgt~Al~~al~al~~-----~~~~~~eVi~p~~t~~a~~~ai~~~G~~pv~vDi~~~~ 106 (371)
T d2fnua1 33 SLLFEEALCEFLGVKHA-LVFNSATSALLTLYRNFSE-----FSADRNEIITTPISFVATANMLLESGYTPVFAGIKNDG 106 (371)
T ss_dssp HHHHHHHHHHHHTCSEE-EEESCHHHHHHHHHHHSSC-----CCTTSCEEEECSSSCTHHHHHHHHTTCEEEECCBCTTS
T ss_pred HHHHHHHHHHHHCcCeE-EEEecHHHHHHHHHHHhcc-----cCCCCCeeecccccccccceeeeccCcccccccccccc
Confidence 56789999999999875 5678898877655554321 11235689999876666666677899999999999888
Q ss_pred CCCHHHHHHHHHhcCCCEEEEEEEcCCCccccccCHHHHHHHHHHcCCEEEEEccccccccCC-CCCCccCCcEEEeCCc
Q 001989 714 NINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGL-TSPGYIGADVCHLNLH 792 (985)
Q Consensus 714 ~iD~e~L~~~i~~~~~~t~~Vvv~~pn~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l-~~pg~~g~Di~~~s~h 792 (985)
.++.++++++++ ++|++|++++ ..|... |+++|.++|+++|++++-|+||+.+.--- ...|.+ .|+.++|+|
T Consensus 107 ~~~~~~~~~~~~---~~t~avi~vh--~~G~~~-~~~~i~~~~~~~~i~lIEDaaqa~Ga~~~~~~~G~~-g~~~~~Sf~ 179 (371)
T d2fnua1 107 NIDELALEKLIN---ERTKAIVSVD--YAGKSV-EVESVQKLCKKHSLSFLSDSSHALGSEYQNKKVGGF-ALASVFSFH 179 (371)
T ss_dssp SBCGGGSGGGCC---TTEEEEEEEC--GGGCCC-CHHHHHHHHHHHTCEEEEECTTCTTCEETTEETTSS-SSEEEEECC
T ss_pred cccchhhhhhcc---chhhcccccc--cccccc-ccccccccccccchhhccchhhccCceeccccCCcc-ccccccccc
Confidence 888888888887 8999999876 778887 89999999999999999999996432111 112333 467666664
Q ss_pred ccccccCCCCCCceEEEEEcc-cccCcCCC-CccccCCCC-CCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHHHH
Q 001989 793 KTFCIPHGGGGPGMGPIGVKK-HLAPFLPS-HPVVSTGGI-PAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLT 869 (985)
Q Consensus 793 K~l~~p~g~GGPg~G~i~~~~-~l~~~lp~-~~~g~~~~~-~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl~ 869 (985)
=+ ++++.| ++|++++++ ++.+.+.. +..|..... .++.......+... ....++.++.-| +.+.
T Consensus 180 ~~--K~l~~g--~GG~i~t~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~G~n~r~----sel~Aaigl~qL-----~~l~ 246 (371)
T d2fnua1 180 AI--KPITTA--EGGAVVTNDSELHEKMKLFRSHGMLKKDFFEGEVKSIGHNFRL----NEIQSALGLSQL-----KKAP 246 (371)
T ss_dssp TT--SSSCCS--SCEEEEESCHHHHHHHHHHTBTTEEESSSSCEEESSCCCBCCC----CHHHHHHHHHHH-----TTHH
T ss_pred cc--cccccc--cceEEEeechhhhhhcccccccccccccccccccccccccccc----cchhhhhhhhhh-----hhcc
Confidence 22 233333 346777764 33332210 011110000 00000000011111 112222222222 2345
Q ss_pred HHHHHHHHHHHHHHHHhhccCCeee--cCC-CCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCCCC------
Q 001989 870 EASKIAILNANYMAKRLEKHYPILF--RGV-NGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWP------ 940 (985)
Q Consensus 870 ~~~~~~~~~a~~l~~~L~~g~~l~~--~~~-~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~~p------ 940 (985)
+..++..+++.++.+.|.+...+.. +.. .....+.+.+-+.. .....-+++.+.|.++||.+.....|
T Consensus 247 ~~~~~R~~~~~~y~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~---~~~~~r~~~~~~L~~~gI~~~~~y~pl~~~~~ 323 (371)
T d2fnua1 247 FLMQKREEAALTYDRIFKDNPYFTPLHPLLKDKSSNHLYPILMHQ---KFFTCKKLILESLHKRGILAQVHYKPIYQYQL 323 (371)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSSEEESGGGCSSCCCCSCEEEEECG---GGGGGHHHHHHHHHHTTEECBCCCCCGGGSHH
T ss_pred chhhhhhhhhhhhcccccccccccccccccccccccccccccccc---cchhHHHHHHHHHHHCCCCcceeCcccccCHH
Confidence 5555666777888888876322211 111 11222223333321 01123567999999999976532112
Q ss_pred ---------C-------CCEEEEeccCCCCHHHHHHHHccCChhHHHHh
Q 001989 941 ---------V-------PGTLMIEPTESESKSWTGIVMLSSPSEKKLHR 973 (985)
Q Consensus 941 ---------~-------~~~lris~t~~~t~eeId~~~~~~~l~~~~~~ 973 (985)
. ...+.+-.+...|++|+++ .++.+++.++.
T Consensus 324 ~~~~~~~~~~pnae~~~~~~l~LP~~~~lt~~di~~--I~~~i~~~~~~ 370 (371)
T d2fnua1 324 YQQLFNTAPLKSAEDFYHAEISLPCHANLNLESVQN--IAHSVLKTFES 370 (371)
T ss_dssp HHHHHCCCCCHHHHHHHHHEEEECCCTTCCHHHHHH--HHHHHHHHHHH
T ss_pred HHhccccCCCHHHHHHHhCeEECcCCCCCCHHHHHH--HHHHHHHHHHc
Confidence 0 1356666667789999999 77888877764
|
| >d1e5ea_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL1 [TaxId: 5722]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Trichomonas vaginalis, MGL1 [TaxId: 5722]
Probab=99.50 E-value=1.4e-12 Score=145.47 Aligned_cols=214 Identities=18% Similarity=0.159 Sum_probs=150.2
Q ss_pred HHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHH----HHHCCcEEEEEcC
Q 001989 634 FNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPAT----AAMCGMKIVSVGT 709 (985)
Q Consensus 634 ~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~----a~~~G~~vv~v~~ 709 (985)
...+++.++++-|.+.+ +.+.||..|+.++++++. .++++|++++..+|..... ....|+++.+++.
T Consensus 61 ~~~le~~la~LEg~~~a-~~~sSGmaAi~~~~l~l~--------~~gd~vv~~~~~yg~t~~~~~~~~~~~gi~~~~~d~ 131 (394)
T d1e5ea_ 61 VSNLEGKIAFLEKTEAC-VATSSGMGAIAATVLTIL--------KAGDHLISDECLYGCTHALFEHALTKFGIQVDFINT 131 (394)
T ss_dssp HHHHHHHHHHHHTCSEE-EEESSHHHHHHHHHHHHC--------CTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECT
T ss_pred HHHHHHHHHHHhCCcce-eeeccchHHHHHHHHhhc--------ccccccccccceeehhhHhHHHHhhccceeeeccCC
Confidence 34678999999998765 444577766644444432 4789999988767644332 4578999999987
Q ss_pred CCCCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccCHHHHHHHHHH-cCCEEEEEccccccccCCCCCCccCCcEE
Q 001989 710 DAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHD-NGGQVYMDGANMNAQVGLTSPGYIGADVC 787 (985)
Q Consensus 710 d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~di~eI~~la~~-~galliVD~a~~~~~~~l~~pg~~g~Di~ 787 (985)
+ |+++++++++ ++|++|+++.| |++..+. |++++++++++ +|++++||-+- +-..+.+|-++|+||+
T Consensus 132 ~-----d~~~~~~~i~---~~t~lv~~Etp~NP~l~v~-Di~~~~~~~~~~~g~~vvvDnT~--atP~~~~Pl~~GaDiV 200 (394)
T d1e5ea_ 132 A-----IPGEVKKHMK---PNTKIVYFETPANPTLKII-DMERVCKDAHSQEGVLVIADNTF--CSPMITNPVDFGVDVV 200 (394)
T ss_dssp T-----STTHHHHHCC---TTEEEEEEESSCTTTCCCC-CHHHHHHHHHTSTTCEEEEECTT--TCTTTCCGGGGTCSEE
T ss_pred C-----CHHHHHHhhc---ccccEEEEeccCCcceeee-hhhhhhhccccccCeEEEecCcc--cCcccCCchhcCCCEE
Confidence 4 7889999998 89999999998 5677776 89999987765 68999999653 3455678999999999
Q ss_pred EeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHH
Q 001989 788 HLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKG 867 (985)
Q Consensus 788 ~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eG 867 (985)
+.|..|+++. -+---+|.++++++......-..+ ...++...+. .. +++...|.+.
T Consensus 201 vhS~TKy~~G---hsDv~~G~v~~~~~~~~~~~~~~~-----------~~~~G~~lsp--------~~--a~ll~rgl~T 256 (394)
T d1e5ea_ 201 VHSATKYING---HTDVVAGLICGKADLLQQIRMVGI-----------KDITGSVISP--------HD--AWLITRGLST 256 (394)
T ss_dssp EEETTTTTTC---SSCCCCEEEEECHHHHHHHHHTCC-----------CCCCCCCCCH--------HH--HHHHHHHHTT
T ss_pred EechhhhcCC---CcccccccccchhhHHHHHHHHHH-----------HHhhCCCCCh--------HH--HHHHHhhchh
Confidence 9999999952 222356777777554322100000 0112232221 12 3445556677
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCC
Q 001989 868 LTEASKIAILNANYMAKRLEKHYP 891 (985)
Q Consensus 868 l~~~~~~~~~~a~~l~~~L~~g~~ 891 (985)
+..++++..+++..+++.|++...
T Consensus 257 L~lRm~r~~~nA~~lA~~L~~hp~ 280 (394)
T d1e5ea_ 257 LNIRMKAESENAMKVAEYLKSHPA 280 (394)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCTT
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCC
Confidence 888899999999999999997544
|
| >d1pffa_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL2 [TaxId: 5722]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Trichomonas vaginalis, MGL2 [TaxId: 5722]
Probab=99.49 E-value=4.3e-13 Score=146.53 Aligned_cols=217 Identities=17% Similarity=0.146 Sum_probs=148.6
Q ss_pred HHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHH----HHHHCCcEEEEEcCCC
Q 001989 636 NLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPA----TAAMCGMKIVSVGTDA 711 (985)
Q Consensus 636 e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~----~a~~~G~~vv~v~~d~ 711 (985)
.+++.++++-|.+.+ +.+.||-.|+.++++++. ++||+||+++..+|.... .....|+++.+++.+
T Consensus 2 aLE~~la~Leg~~~a-~~~sSGMaAi~~~l~~ll--------~~Gd~iv~~~~~Yg~t~~~~~~~l~~~gi~~~~~d~~- 71 (331)
T d1pffa_ 2 ALEGKIAKLEHAEAC-AATASGMGAIAASVWTFL--------KAGDHLISDDCLYGCTHALFEHQLRKFGVEVDFIDMA- 71 (331)
T ss_dssp HHHHHHHHHHTCSEE-EEESSHHHHHHHHHHHHC--------CTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECTT-
T ss_pred HHHHHHHHHhCCCeE-EEECCHHHHHHHHHHHHh--------CCCCEEEEeCCCchHHHHHHHHHHHhcCeEEEEeccc-
Confidence 467899999998765 445678777645555442 478899998765543322 245789999999874
Q ss_pred CCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccCHHHHHHHH-HHcCCEEEEEccccccccCCCCCCccCCcEEEe
Q 001989 712 KGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKII-HDNGGQVYMDGANMNAQVGLTSPGYIGADVCHL 789 (985)
Q Consensus 712 ~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~di~eI~~la-~~~galliVD~a~~~~~~~l~~pg~~g~Di~~~ 789 (985)
|++.++++++ ++|++|+++.| |++..+. |++++++++ |++|++++||-+- +-..+.+|-++|+||++.
T Consensus 72 ----d~~~~~~~i~---~~t~~i~~Es~~np~~~v~-d~~~~~~~~a~~~~~~~vVDnT~--atp~~~~pl~~GaDiVv~ 141 (331)
T d1pffa_ 72 ----VPGNIEKHLK---PNTRIVYFETPANPTLKVI-DIEDAVKQARKQKDILVIVDNTF--ASPILTNPLDLGVDIVVH 141 (331)
T ss_dssp ----STTHHHHTCC---TTEEEEEEESSCTTTCCCC-CHHHHHHHHTTSSSCEEEEECTT--THHHHCCGGGGTCSEEEE
T ss_pred ----chhhHhhhcc---cccceeeeecccccccccc-cchhhhhhhhcccCceEEeeccc--cccccccccccCCCEEEe
Confidence 8899999997 89999999998 5667776 899999985 6789999999653 333456899999999999
Q ss_pred CCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHHHH
Q 001989 790 NLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLT 869 (985)
Q Consensus 790 s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl~ 869 (985)
|..|+++ |.+.--+|.++.+++.........+ ...++...+ + ..||..+ -|.+-+.
T Consensus 142 S~TKy~~---Gh~d~~~G~v~~~~~~~~~~~~~~~-----------~~~~G~~l~-----p---~~a~ll~--rgl~Tl~ 197 (331)
T d1pffa_ 142 SATKYIN---GHTDVVAGLVCSRADIIAKVKSQGI-----------KDITGAIIS-----P---HDAWLIT--RGTLTLD 197 (331)
T ss_dssp ETTTTTS---SSSSCCCEEEEECHHHHHHHHHTCC-----------CCCCCCCCC-----H---HHHHHHH--HHHHHHH
T ss_pred cchhhcC---CCCccccccccccccchhhhhhhhh-----------hhccCCCCC-----H---HHHHHHH--HHHHHHH
Confidence 9999985 2233456777777543221100000 011122221 1 1234443 4556678
Q ss_pred HHHHHHHHHHHHHHHHhhccC---CeeecC
Q 001989 870 EASKIAILNANYMAKRLEKHY---PILFRG 896 (985)
Q Consensus 870 ~~~~~~~~~a~~l~~~L~~g~---~l~~~~ 896 (985)
.+.++..+|+..+++.|++.. ++.|++
T Consensus 198 ~Rm~~~~~nA~~lA~~L~~hp~V~~V~yPg 227 (331)
T d1pffa_ 198 MRVKRAAENAQKVAEFLHEHKAVKKVYYPG 227 (331)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCCCEECTT
T ss_pred HHHHHHHHHHHHHHHhhhhCCcEEeecccc
Confidence 888999999999999998732 455544
|
| >d1bjna_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Escherichia coli [TaxId: 562]
Probab=99.48 E-value=2.5e-14 Score=158.39 Aligned_cols=306 Identities=10% Similarity=-0.073 Sum_probs=172.1
Q ss_pred hhHHHHHHHHHHHHHHHhCCCcc-c-eec-CcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHH----HHHHC
Q 001989 628 QGYQEMFNNLGEWLCTITGFDSF-S-LQP-NAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPA----TAAMC 700 (985)
Q Consensus 628 ~G~~~~~~e~~~~la~l~G~~~~-~-~~~-~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~----~a~~~ 700 (985)
+.+.++++++++.+++++|.+.. . ++. ++|+.+++++.. .. ..+++.+++... +.+.. .++..
T Consensus 42 ~ef~~l~~~~r~~l~~l~~~~~~~~v~~~~gs~t~~~~a~~~---~~-----~~~~~~v~~~~~--~~~~~~~~~~~~~~ 111 (360)
T d1bjna_ 42 KEFIQVAEEAEKDFRDLLNVPSNYKVLFCHGGGRGQFAAVPL---NI-----LGDKTTADYVDA--GYWAASAIKEAKKY 111 (360)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHH---HH-----CTTCCEEEEEES--SHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCCEEEEECCchHHHHhhhhh---cc-----cccccccceecc--cchhhhhHHHHhhc
Confidence 45678899999999999999752 2 333 444444433222 11 135566666543 22221 24456
Q ss_pred CcEEEEEcCCCCCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCC
Q 001989 701 GMKIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSP 779 (985)
Q Consensus 701 G~~vv~v~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~p 779 (985)
|..++.+..+.++..+.+.+++.+. ++++++++++. |.+|+.. +++++. ++.+++++++|+++. .+.. ..
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~v~~~~~~t~~~~-~~~~i~--~~~~~~~v~vDa~~~--~~~~-~v 182 (360)
T d1bjna_ 112 CTPNVFDAKVTVDGLRAVKPMREWQ---LSDNAAYMHYCPNETIDGI-AIDETP--DFGADVVVAADFSST--ILSR-PI 182 (360)
T ss_dssp SEEEEEECEEEETTEEEECCGGGCC---CCSSCSCEEECSEETTTTE-ECCCCC--CCCTTCCEEEECTTT--TTSS-CC
T ss_pred CccceeeccccCCCcchhhhhhhhc---cCCceeEEEecccccccCc-ccccee--cccccceeeeeeecc--ccce-ee
Confidence 7777777665555566666666554 56666666554 4577776 566664 577899999998864 3332 34
Q ss_pred CccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCC-CCCCCCCCCCCCCCCCcchhhhHHHHHHHH
Q 001989 780 GYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTG-GIPAPEKSQPLGTIAAAPWGSALILPISYT 858 (985)
Q Consensus 780 g~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~-~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a 858 (985)
..+++|+.++++||+++ ++|++|+++.++......+........ +.... .. ...... ......+. ..
T Consensus 183 d~~~~dv~~~ss~k~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~---~~~~~~~~--~~ 250 (360)
T d1bjna_ 183 DVSRYGVIYAGAQKNIG-----PAGLTIVIVREDLLGKANIACPSILDYSILNDN-GS-MFNTPP---TFAWYLSG--LV 250 (360)
T ss_dssp CGGGCSEEEEETTTTTS-----STTCEEEEEEGGGCSCCCTTSCGGGCHHHHHHT-TT-CSSCCC---HHHHHHHH--HH
T ss_pred eeccceeEEEEcccccc-----cCCCceeEeeehhhhhccccCCcchhhHHHHhh-hh-hccccc---cchHHHHH--HH
Confidence 45678999999999985 346777777776555443322111100 00000 00 011111 11111111 12
Q ss_pred HHHHhcHHHHHHHHHHHHHHHHHHHHHhhcc-CCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCC
Q 001989 859 YIAMMGSKGLTEASKIAILNANYMAKRLEKH-YPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTM 937 (985)
Q Consensus 859 ~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~g-~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~ 937 (985)
.+..+...+.....++..+.+.++.+.+... .......+.......+.+.++ .+.+.+++.+.|.++||.+..-
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rs~~v~~f~~~-----~~~~~~~~~~~l~~~Gi~~~~G 325 (360)
T d1bjna_ 251 FKWLKANGGVAEMDKINQQKAELLYGVIDNSDFYRNDVAKRNRSRMNVPFQLA-----DSALDKLFLEESFAAGLHALKG 325 (360)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCSSEECCBCGGGBCSSEEEEEES-----SGGGHHHHHHHHHHTTEECCBC
T ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHhhhccccccccCCcccccceEEEEEcC-----CcccHHHHHHHHHHCCCEeecC
Confidence 2222223344444555555666665555442 111111111111112445554 2567889999999999986431
Q ss_pred CCCCCCEEEEeccCCCCHHHHHHHHccCChhHHHH
Q 001989 938 SWPVPGTLMIEPTESESKSWTGIVMLSSPSEKKLH 972 (985)
Q Consensus 938 ~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~ 972 (985)
+..-+.+|||...++|.|||++ +++.|++..+
T Consensus 326 -~~~~g~~Ris~~~~~t~edV~~--li~~l~e~~~ 357 (360)
T d1bjna_ 326 -HRVVGGMRASIYNAMPLEGVKA--LTDFMVEFER 357 (360)
T ss_dssp -CTTTCSEEEECCTTSCHHHHHH--HHHHHHHHHH
T ss_pred -CCccCeEEEEecCCCCHHHHHH--HHHHHHHHHH
Confidence 1112569999999999999999 7888888554
|
| >d1qgna_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-synthase, CGS species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=99.46 E-value=2e-12 Score=143.79 Aligned_cols=212 Identities=18% Similarity=0.142 Sum_probs=146.0
Q ss_pred HHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHH----HHHCCcEEEEEcC
Q 001989 634 FNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPAT----AAMCGMKIVSVGT 709 (985)
Q Consensus 634 ~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~----a~~~G~~vv~v~~ 709 (985)
...+++.++++-|.+.+ +.+.||-.|+.++++++. ++||+||+++..+|..... ....|+++..++.
T Consensus 69 ~~~LE~~la~LEgg~~a-~~~sSGMaAi~~~l~~l~--------~~Gd~iv~~~~~Yg~t~~l~~~~~~~~gi~~~~~~~ 139 (398)
T d1qgna_ 69 TVVLEEKISALEGAEST-LLMASGMCASTVMLLALV--------PAGGHIVTTTDCYRKTRIFIETILPKMGITATVIDP 139 (398)
T ss_dssp HHHHHHHHHHHHTCSEE-EEESCHHHHHHHHHHHHS--------CSSCEEEEETTSCHHHHHHHHHTGGGGTCEEEEECS
T ss_pred HHHHHHHHHHHhCCceE-EEecCcchHHHHHHhhcc--------cccccccccccccchhhhhhcccccccccccccccc
Confidence 34688999999998765 445678777655555432 4789999987766543332 3467999988875
Q ss_pred CCCCCCCHHHHHH-HHHhcCCCEEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCccCCcEE
Q 001989 710 DAKGNINIEELRK-AAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIGADVC 787 (985)
Q Consensus 710 d~~g~iD~e~L~~-~i~~~~~~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~g~Di~ 787 (985)
. |.++.++ .++ ++|++|+++.| |++.-+. ||++|+++||++|++++||.+- +-..+.+|-++|+||+
T Consensus 140 ~-----~~~~~~~~~~~---~~t~~v~~EspsNP~l~v~-Di~~ia~ia~~~g~~~vVDnT~--atP~~~~Pl~~GaDiV 208 (398)
T d1qgna_ 140 A-----DVGALELALNQ---KKVNLFFTESPTNPFLRCV-DIELVSKLCHEKGALVCIDGTF--ATPLNQKALALGADLV 208 (398)
T ss_dssp S-----CHHHHHHHHHH---SCEEEEEEESSCTTTCCCC-CHHHHHHHHHHTTCEEEEECTT--TCTTTCCTTTTTCSEE
T ss_pred c-----chhhhhhhhcc---ccceEEEccCccccccccc-hHHHHHHHHhhcCCEEEeccee--eccccCCchhhCCCEE
Confidence 2 5555544 455 89999999998 5677776 9999999999999999999653 3445678999999999
Q ss_pred EeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHH
Q 001989 788 HLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKG 867 (985)
Q Consensus 788 ~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eG 867 (985)
+.|..|+++. .+.-.+|.+..++++...+.... ..++.+.+ ...||..+ .|.+-
T Consensus 209 ihS~TKy~~G---hsdv~~G~v~~~~~~~~~~~~~~-------------~~~G~~l~--------p~~a~ll~--rgl~T 262 (398)
T d1qgna_ 209 LHSATKFLGG---HNDVLAGCISGPLKLVSEIRNLH-------------HILGGALN--------PNAAYLII--RGMKT 262 (398)
T ss_dssp EECTTTTTTC---SSSCCCEEEEECHHHHHHHHHHH-------------HHHCCCCC--------HHHHHHHH--HHGGG
T ss_pred EEechhhcCc---ccceeehhhcchhhhhhhhhhhc-------------ccCCCcCC--------HHHHHHHH--hcchH
Confidence 9999999852 12224677776665543321100 01112221 12244444 45566
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCC
Q 001989 868 LTEASKIAILNANYMAKRLEKHYP 891 (985)
Q Consensus 868 l~~~~~~~~~~a~~l~~~L~~g~~ 891 (985)
+..++++..+++..+++.|++...
T Consensus 263 L~lRm~~~~~nA~~lA~~L~~hp~ 286 (398)
T d1qgna_ 263 LHLRVQQQNSTALRMAEILEAHPK 286 (398)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCC
Confidence 788889999999999999987543
|
| >d1cl1a_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine beta-lyase, CBL species: Escherichia coli [TaxId: 562]
Probab=99.46 E-value=1.2e-12 Score=145.85 Aligned_cols=212 Identities=15% Similarity=0.129 Sum_probs=149.6
Q ss_pred HHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHH----HHHCCcEEEEEcC
Q 001989 634 FNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPAT----AAMCGMKIVSVGT 709 (985)
Q Consensus 634 ~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~----a~~~G~~vv~v~~ 709 (985)
...+++.++++-|.+.+ +.+.||-.|+.++++++. .+|++||+++..+|..... ....|+++..++.
T Consensus 60 ~~~le~~la~LEg~~~a-~~~~SGMaAi~~~l~~l~--------~~Gd~iv~~~~~Yg~T~~l~~~~l~~~Gi~~~~~d~ 130 (391)
T d1cl1a_ 60 HFSLQQAMCELEGGAGC-VLFPCGAAAVANSILAFI--------EQGDHVLMTNTAYEPSQDFCSKILSKLGVTTSWFDP 130 (391)
T ss_dssp HHHHHHHHHHHHTCSEE-EEESSHHHHHHHHHHHHC--------CTTCEEEEETTSCHHHHHHHHHTGGGGTCEEEEECT
T ss_pred HHHHHHHHHHHhCCccE-EEeccccceeeehhhccc--------CCCCeEEEecccccchhhhhhhcccccccccccccC
Confidence 34678899999998765 445678777755555542 4789999988777654333 3467999999886
Q ss_pred CCCCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccCHHHHHHHHHHc--CCEEEEEccccccccCCCCCCccCCcE
Q 001989 710 DAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDN--GGQVYMDGANMNAQVGLTSPGYIGADV 786 (985)
Q Consensus 710 d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~--galliVD~a~~~~~~~l~~pg~~g~Di 786 (985)
+ |.++++++++ ++|++|+++.| |++.-+. ||++|+++|+++ |++++||.+- +-..+.+|-++|+|+
T Consensus 131 ~-----d~~~~~~~i~---~~t~~i~~EtpsNP~l~v~-Di~~i~~~a~~~~~g~~~vVDnT~--atP~~~~Pl~~GaDi 199 (391)
T d1cl1a_ 131 L-----IGADIVKHLQ---PNTKIVFLESPGSITMEVH-DVPAIVAAVRSVVPDAIIMIDNTW--AAGVLFKALDFGIDV 199 (391)
T ss_dssp T-----CGGGGGGTCC---TTEEEEEEESSCTTTCCCC-CHHHHHHHHHHHCTTCEEEEECTT--TTTTSSCGGGGTCSE
T ss_pred c-----cccccccccc---cccceeeecccCccccccc-ccHHHHHHHHhccCCcEEEEeccc--cchhhhcccccccce
Confidence 3 7888888887 89999999998 5666666 899999999775 9999999653 344567899999999
Q ss_pred EEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHH
Q 001989 787 CHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSK 866 (985)
Q Consensus 787 ~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~e 866 (985)
++.|..|+++ |.+.-.+|.++.+++....+... .+.++...+ + ..|| +...|.+
T Consensus 200 vvhS~TKy~~---GhsdvlgG~vv~~~~~~~~~~~~-------------~~~~G~~~~-----p---~~a~--ll~rgl~ 253 (391)
T d1cl1a_ 200 SIQAATKYLV---GHSDAMIGTAVCNARCWEQLREN-------------AYLMGQMVD-----A---DTAY--ITSRGLR 253 (391)
T ss_dssp EEEETTTTTT---CSSSCCCEEEEECTTTHHHHHHH-------------HHHTTCCCC-----H---HHHH--HHHHHHT
T ss_pred EEeecchhcc---ccccccccceeccccccccchhh-------------hhcccccCC-----c---hhhh--hhhccch
Confidence 9999999985 22223567777676554332110 001122221 1 1234 4444556
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCC
Q 001989 867 GLTEASKIAILNANYMAKRLEKHYP 891 (985)
Q Consensus 867 Gl~~~~~~~~~~a~~l~~~L~~g~~ 891 (985)
.+..++++..+++..+++.|++...
T Consensus 254 TL~lR~~~~~~nA~~vA~~L~~hp~ 278 (391)
T d1cl1a_ 254 TLGVRLRQHHESSLKVAEWLAEHPQ 278 (391)
T ss_dssp THHHHHHHHHHHHHHHHHHHHTCTT
T ss_pred hHHHHHHHHHHHHHHHHHHHHhccc
Confidence 7778889999999999999987543
|
| >d1o69a_ c.67.1.4 (A:) Aminotransferase homolog WlaK (PglE, Cj1121c) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Aminotransferase homolog WlaK (PglE, Cj1121c) species: Campylobacter jejuni [TaxId: 197]
Probab=99.45 E-value=3.3e-12 Score=142.74 Aligned_cols=165 Identities=18% Similarity=0.137 Sum_probs=117.0
Q ss_pred HHHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcCCCC
Q 001989 633 MFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAK 712 (985)
Q Consensus 633 ~~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~d~~ 712 (985)
..+++|+.+++++|.+.+ +.++||+.|.+.+++++ +..+||+||+|...+.+...+....|++++.++++++
T Consensus 22 ~~~~fE~~~~~~~~~~~~-~~~~SgT~Al~lal~~l-------~~~~gdeVi~p~~t~~a~~~~~~~~g~~pv~~Di~~~ 93 (374)
T d1o69a_ 22 FVNRFEQSVKDYSKSENA-LALNSATAALHLALRVA-------GVKQDDIVLASSFTFIASVAPICYLKAKPVFIDCDET 93 (374)
T ss_dssp HHHHHHHHHHHHHCCSEE-EEESCHHHHHHHHHHHT-------TCCTTCEEEEESSSCGGGTHHHHHTTCEEEEECBCTT
T ss_pred HHHHHHHHHHHHHCcCeE-EEeCCHHHHHHHHHHHc-------CCCCcCEEEeCCcchHhhHHHHhhccceeEecccccc
Confidence 366899999999999864 66788998886665543 2357899999998777777777889999999999876
Q ss_pred CCCCHHHHHHHHHhcCCCEEEEEEEcCCCccccccCHHHHHHHHHHcCCEEEEEccccccccCC-CCCCccCCcEEEeCC
Q 001989 713 GNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGL-TSPGYIGADVCHLNL 791 (985)
Q Consensus 713 g~iD~e~L~~~i~~~~~~t~~Vvv~~pn~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l-~~pg~~g~Di~~~s~ 791 (985)
...+..+.........++|++|++++ ..|... |+++|.++|+++|+.|+-|+||+.+.--- ...|.+ .|+.++|+
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~aii~~~--~~G~~~-d~~~i~~~~~~~~i~vIED~a~a~g~~~~~~~~G~~-gd~~~fSf 169 (374)
T d1o69a_ 94 YNIDVDLLKLAIKECEKKPKALILTH--LYGNAA-KMDEIVEICKENDIVLIEDAAEALGSFYKNKALGTF-GEFGVYSY 169 (374)
T ss_dssp SSBCHHHHHHHHHHCSSCCCEEEEEC--GGGCCC-CHHHHHHHHHHTTCEEEEECTTCTTCEETTEETTSS-SSEEEEEC
T ss_pred cccccccccccchhcccccccccccc--cccchh-hhHHHHHHhhccCcchhhhhhhhhcceECCeecCCC-CceEEEec
Confidence 44433333332222236788888876 568877 89999999999999999999996432111 123444 49999998
Q ss_pred cccccccCCCCCCceEEEEEcc
Q 001989 792 HKTFCIPHGGGGPGMGPIGVKK 813 (985)
Q Consensus 792 hK~l~~p~g~GGPg~G~i~~~~ 813 (985)
|.+ ++++.| ++|+++++.
T Consensus 170 ~~~--K~l~tg--eGG~i~tnn 187 (374)
T d1o69a_ 170 NGN--KIITTS--GGGMLIGKN 187 (374)
T ss_dssp CTT--SSSCCS--SCEEEEESC
T ss_pred cCc--cccccc--cceeehhhh
Confidence 743 233333 346677663
|
| >d1v72a1 c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Phenylserine aldolase PSALD species: Pseudomonas putida [TaxId: 303]
Probab=99.44 E-value=1.9e-12 Score=140.64 Aligned_cols=275 Identities=15% Similarity=0.069 Sum_probs=161.3
Q ss_pred HHHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeC---
Q 001989 211 ESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSD--- 287 (985)
Q Consensus 211 ~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~--- 287 (985)
+.+.++++.+|+++|.+. .+.++++||.+.++++.+. ...++++++....|.+....+.... ..+..+..++
T Consensus 38 ~~~~~l~~~la~~~g~~~-~v~f~~sGt~An~~a~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 112 (345)
T d1v72a1 38 ELTAQVKRKFCEIFERDV-EVFLVPTGTAANALCLSAM---TPPWGNIYCHPASHINNDECGAPEF-FSNGAKLMTVDGP 112 (345)
T ss_dssp HHHHHHHHHHHHHHTSCC-EEEEESCHHHHHHHHHHTS---CCTTEEEEECTTSHHHHSSTTHHHH-HTTSCEEEECCCG
T ss_pred HHHHHHHHHHHHHHCCCc-EEEECCchHHHHHHHHHHH---HhcCCccccccccceeeechhhHHH-hcCcccccccccc
Confidence 556789999999999875 3557799997666555432 2367889999999988776543221 2344444432
Q ss_pred -----chhhhc-cC------CC--EeEEEEEcCCCCe---eeccHHHHHHHHHhCCcEEEEEecCcccc----CCCCCC-
Q 001989 288 -----LKDIDY-KS------GD--VCGVLVQYPGTEG---EVLDYGDFIKNAHANGVKVVMATDLLALT----ILKPPG- 345 (985)
Q Consensus 288 -----~~~l~~-l~------~~--t~~V~v~~pn~~G---~v~di~~I~~~a~~~galliV~a~~~~lg----~l~~~~- 345 (985)
+++++. +. .. +..+.+...|..| .+.++.++.++||++|++++++. ....+ ......
T Consensus 113 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~D~-~~~~~~~~~~~~~~~~ 191 (345)
T d1v72a1 113 AAKLDIVRLRERTREKVGDVHTTQPACVSITQATEVGSIYTLDEIEAIGDVCKSSSLGLHMDG-SRFANALVSLGCSPAE 191 (345)
T ss_dssp GGCCCHHHHHHHTTSSTTCTTSCEEEEEEEESSCTTSCCCCHHHHHHHHHHHHHTTCEEEEEE-TTHHHHHHHHTCCTTT
T ss_pred cccccHHHhhhhhcccccccccccceeeeeeccccccccccchhhhhHHHHHHhcCceeeecc-cccceeccccccCHHH
Confidence 233332 21 12 2333344444443 45688999999999999999953 22111 011111
Q ss_pred -c--ccceEEEecCccccccCCCCCCcEEEEEEchh-hHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCcc
Q 001989 346 -E--LGADIVVGSAQRFGVPMGYGGPHAAFLATSQE-YKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNIC 421 (985)
Q Consensus 346 -~--~GaDi~v~s~k~lg~P~~~GGP~~G~l~~~~~-~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~ 421 (985)
. ...+.+..+. .. .|+...+.+..... ..... ..+ ....++++
T Consensus 192 ~~~~~~~~~~~~~~-~~-----~~~~~~~~~~~~~~~~~~~~-----------------------~~~--~~~~~~~~-- 238 (345)
T d1v72a1 192 MTWKAGVDALSFGA-TK-----NGVLAAEAIVLFNTSLATEM-----------------------SYR--RKRAGHLS-- 238 (345)
T ss_dssp TTGGGTCCEEEECC-GG-----GTCSSCEEEEESSGGGHHHH-----------------------HHH--HHHTTCCC--
T ss_pred hhccccccccccCc-cc-----cccccccccccchhhhhhhc-----------------------ccc--cccccccc--
Confidence 1 2223333222 11 12222222222211 11000 000 00111111
Q ss_pred chhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCCCcceEEEecCCHHHHHHHHHHcCceeee
Q 001989 422 TAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDTVKVKCADAHAIASAAYKIEMNLRV 501 (985)
Q Consensus 422 t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~~~L~~~GI~~~~ 501 (985)
+.... +..++ ...+......+...+...+..++.+.|.+++++++..+...+.+.+..+ .++.++|+++||.+..
T Consensus 239 ~~~~~-aa~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~p~~~niv~~~~~--~~~~~~L~~~gi~v~~ 313 (345)
T d1v72a1 239 SKMRF-LSAQI--DAYLTDDLWLRNARKANAAAQRLAQGLEGLGGVEVLGGTEANILFCRLD--SAMIDALLKAGFGFYH 313 (345)
T ss_dssp SSTHH-HHHHH--HHHTSTTHHHHHHHHHHHHHHHHHHHHTTCTTEEEESCCCSSEEEEEEC--HHHHHHHHHTTCBCBC
T ss_pred chhhH-Hhhhh--HHHHHHhhhhhhccchhhHHHHHHHHHHhcCCcEeccCCCccEEEEEcC--HHHHHHHHHcCCCccc
Confidence 11111 21222 3566667778888888899999999999996688875444455555554 5677889999998754
Q ss_pred e--cCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 502 V--DSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 502 ~--~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
. .++.+|++++.+||+||||+++++|+.
T Consensus 314 ~~~~~~~lR~~~~~~~T~edid~~le~lr~ 343 (345)
T d1v72a1 314 DRWGPNVVRFVTSFATTAEDVDHLLNQVRL 343 (345)
T ss_dssp SSSSTTEEEEECCTTCCHHHHHHHHHHHHH
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3 357899999999999999999999974
|
| >d1gdea_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.44 E-value=6.9e-12 Score=140.67 Aligned_cols=320 Identities=15% Similarity=0.137 Sum_probs=187.2
Q ss_pred HHHHHHhcCCCccceecCCCCCCCCCcHHHHHHHHhC-CccccccCCChhhHhhhHHHHHHHHHHHHHHhc----C---C
Q 001989 155 EHMQKLASMNKVYKSFIGMGYYNTHVPPVILRNIMEN-PAWYTQYTPYQAEIAQGRLESLLNFQTMIADLT----G---L 226 (985)
Q Consensus 155 ~~~~~l~~~n~~~~~~lG~g~y~~~~p~~v~~~i~~~-~~~~t~~~pyq~e~sqg~l~~i~e~q~~ia~L~----g---~ 226 (985)
|.+-+++..++...++ |.|.-+...|+.+.+.+.+. ....+.|+|.+ |. .++++.+|+.+ + .
T Consensus 15 r~~~~~~~~~~dvi~l-~~g~p~~~~p~~v~~~~~~a~~~~~~~Y~~~~-----G~----~~lr~aia~~~~~~~~~~~~ 84 (388)
T d1gdea_ 15 RKLFDIAAGMKDVISL-GIGEPDFDTPQHIKEYAKEALDKGLTHYGPNI-----GL----LELREAIAEKLKKQNGIEAD 84 (388)
T ss_dssp HHHHHHHHHCTTCEEC-CCCSCCSCCCHHHHHHHHHHHHTTCCSCCCTT-----CC----HHHHHHHHHHHHHHHCCCCC
T ss_pred HHHHHHHhCCCCeEEC-CCCCCCCCCCHHHHHHHHHHHhcCccCCCCCc-----CC----HHHHHHHHHHHHhhccccCC
Confidence 4444455555443332 56654455777775444321 01245666543 32 23445555543 2 3
Q ss_pred CCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc----------hhhhc-cC
Q 001989 227 PMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL----------KDIDY-KS 295 (985)
Q Consensus 227 ~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~----------~~l~~-l~ 295 (985)
+..++.++.|++.+...+..++. ++||+|+++.-.|+.+...++. .|.+++.++. ++|++ +.
T Consensus 85 ~~~~i~~t~G~~~~l~~~~~~l~---~~gd~vlv~~P~y~~~~~~~~~----~g~~~~~~~~~~~~~~~~d~~~l~~~~~ 157 (388)
T d1gdea_ 85 PKTEIMVLLGANQAFLMGLSAFL---KDGEEVLIPTPAFVSYAPAVIL----AGGKPVEVPTYEEDEFRLNVDELKKYVT 157 (388)
T ss_dssp TTTSEEEESSTTHHHHHHHTTTC---CTTCEEEEEESCCTTHHHHHHH----HTCEEEEEECCGGGTTCCCHHHHHHHCC
T ss_pred ChheeeeccCcchHHHHHHHHhc---CCCCEEEECCCCcHHHHHHHHH----cCCEEEEeecccccCCCCCHHHHHHhCc
Confidence 45578889999877666555432 3899999999999998888754 4777776643 35666 78
Q ss_pred CCEeEEEEEcC-CCCeeec---cHHHHHHHHHhCCcEEEEEecCccccCCC-----C----CCcccceEEEecC-ccccc
Q 001989 296 GDVCGVLVQYP-GTEGEVL---DYGDFIKNAHANGVKVVMATDLLALTILK-----P----PGELGADIVVGSA-QRFGV 361 (985)
Q Consensus 296 ~~t~~V~v~~p-n~~G~v~---di~~I~~~a~~~galliV~a~~~~lg~l~-----~----~~~~GaDi~v~s~-k~lg~ 361 (985)
++++++++.+| |++|.+. ++++|+++|+++|+++++| +..+.-... + +...+-.|+++|. |.|+.
T Consensus 158 ~~~~~i~~~~P~NPtG~~~s~~~~~~l~~~a~~~~~~vi~D-e~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~ 236 (388)
T d1gdea_ 158 DKTRALIINSPCNPTGAVLTKKDLEEIADFVVEHDLIVISD-EVYEHFIYDDARHYSIASLDGMFERTITVNGFSKTFAM 236 (388)
T ss_dssp TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEE-CTTTTCBCTTCCCCCGGGSTTCGGGEEEEEESTTTTTC
T ss_pred cCCeEEEECCCcCCCCCcCCHHHHHHHHHHHHHcCCEEEEE-cCChhhhhccCCCCChhhccCCCCeEEEEeCChhhccC
Confidence 88999999998 7899885 6889999999999999995 332211110 0 1112335778886 88865
Q ss_pred cCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcc
Q 001989 362 PMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPE 441 (985)
Q Consensus 362 P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~ 441 (985)
| |--+|++++.+++.+.+- +.+...+.|++.......+.+.......+
T Consensus 237 ~----GlR~G~ii~~~~~~~~~~----------------------------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 284 (388)
T d1gdea_ 237 T----GWRLGFVAAPSWIIERMV----------------------------KFQMYNATCPVTFIQYAAAKALKDERSWK 284 (388)
T ss_dssp G----GGCCEEEECCHHHHHHHH----------------------------HHHHTTTCSCCHHHHHHHHHHHTCHHHHH
T ss_pred c----cccEEEEEeeccchhhhh----------------------------hccccccccccccchhhHHHHHhhccchh
Confidence 4 224688888776665431 00111222322222222221100000011
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCCCcceEE-EecC--C--HHHHHHHHH-HcCceeeee------cCCeEEE
Q 001989 442 GLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDTVK-VKCA--D--AHAIASAAY-KIEMNLRVV------DSNTVTA 509 (985)
Q Consensus 442 Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~~~~~~~-~~~~--~--~~~v~~~L~-~~GI~~~~~------~~~~lri 509 (985)
-+++..++..+....+.+.|.+.+ ++... |...-+. ++++ + ..++.++|. ++||.+.+- .++.+|+
T Consensus 285 ~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~-p~gg~fl~~~l~~~~~~~~~~~~~ll~e~gV~v~PG~~F~~~~~~~iRi 362 (388)
T d1gdea_ 285 AVEEMRKEYDRRRKLVWKRLNEMG-LPTVK-PKGAFYIFPRIRDTGLTSKKFSELMLKEARVAVVPGSAFGKAGEGYVRI 362 (388)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTT-CCCCC-CCBTTEECCBCGGGTCCHHHHHHHHHHHTCEECEEGGGGCGGGTTBEEE
T ss_pred HHHHHHHHHHHhhhhhhhhhhhcc-ccccC-CCceEEEEEECCCCCCCHHHHHHHHHHhCCEEEEechhhCCCCCCEEEE
Confidence 234455555667778888888876 55432 2111122 3332 2 778888765 569976431 2578999
Q ss_pred EeccCCCHHHHHHHHHHHh
Q 001989 510 SFDETTTLEDVDKLFIVFA 528 (985)
Q Consensus 510 s~t~~~t~edId~li~aL~ 528 (985)
|+. +++|+|++.++.|+
T Consensus 363 s~~--~~~e~l~~al~rL~ 379 (388)
T d1gdea_ 363 SYA--TAYEKLEEAMDRME 379 (388)
T ss_dssp ECC--SCHHHHHHHHHHHH
T ss_pred Eec--CCHHHHHHHHHHHH
Confidence 986 57788777776665
|
| >d2aeua1 c.67.1.8 (A:9-374) Hypothetical protein MJ0158 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SelA-like domain: Hypothetical protein MJ0158 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.44 E-value=5.6e-13 Score=148.81 Aligned_cols=153 Identities=19% Similarity=0.212 Sum_probs=112.3
Q ss_pred HHHHHHHhcC-CCCcceeeccchHHHHHHHHHHhhhhcCCCCEE-EEc-CCCChhHHHHHHHhhcCCCeEEEE-eCchhh
Q 001989 216 FQTMIADLTG-LPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTF-IIA-SNCHPQTIDICITRADGFDIKVVV-SDLKDI 291 (985)
Q Consensus 216 ~q~~ia~L~g-~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~V-lv~-~~~H~s~~~~~~~~a~~~gi~v~~-v~~~~l 291 (985)
.++..++.++ .+..++.++.|+++++.++++++. +++.| +++ ...|+++...++. .|++++. -++++|
T Consensus 55 l~~~~~~~~~~~~~e~~~~~~~~~~a~~~~l~al~----~~~~vi~~~~~~~~~~~~~~~~l----~g~~~v~~~d~e~l 126 (366)
T d2aeua1 55 VNEYGLKHLGGDENDKCVGFNRTSSAILATILALK----PKKVIHYLPELPGHPSIERSCKI----VNAKYFESDKVGEI 126 (366)
T ss_dssp HHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHHC----CSEEEEECSSSSCCTHHHHHHHH----TTCEEEEESCHHHH
T ss_pred HHHHHHHHccCCCccEEEEeCCHHHHHHHHHHHhC----CCCEEEEecCCCcchhHHHHHHh----cCCeEECCCCHHHH
Confidence 3344444444 455678888999999988888763 55655 454 4699999998864 3666433 356777
Q ss_pred hc-cCCCEeEEEEEcC-CC-CeeeccHHHHHHHHHhCCcEEEEEecCccccCC-----CCCCcccceEEEecC-cccccc
Q 001989 292 DY-KSGDVCGVLVQYP-GT-EGEVLDYGDFIKNAHANGVKVVMATDLLALTIL-----KPPGELGADIVVGSA-QRFGVP 362 (985)
Q Consensus 292 ~~-l~~~t~~V~v~~p-n~-~G~v~di~~I~~~a~~~galliV~a~~~~lg~l-----~~~~~~GaDi~v~s~-k~lg~P 362 (985)
++ ++++|+++++.+| |+ .+.+.|+++|+++||++|+++++| +.++.++. ..+.++|+|++++|. |.+
T Consensus 127 ~~~i~~~tk~i~~~~p~n~~~~~~~~l~~i~~ia~~~~~~~i~D-e~y~~~~~~~~~~~~~~~~~~di~~~S~sK~~--- 202 (366)
T d2aeua1 127 LNKIDKDTLVIITGSTMDLKVIELENFKKVINTAKNKEAIVFVD-DASGARVRLLFNQPPALKLGADLVVTSTDKLM--- 202 (366)
T ss_dssp HTTCCTTEEEEEECBCTTSCBCCHHHHHHHHHHHHHHTCCEEEE-CTTHHHHHHHTTCCCHHHHTCSEEEEETTSSS---
T ss_pred HHhcCCCceEEEEEecCCCCcCCHHHHHHHHHHhccCcEEEEEe-cCccccccccccCCCHhhcCceEEEecccccc---
Confidence 77 8999999999887 54 456889999999999999999995 44443321 123478999999998 644
Q ss_pred CCCCCCcEEEEEEchhhHhcC
Q 001989 363 MGYGGPHAAFLATSQEYKRMM 383 (985)
Q Consensus 363 ~~~GGP~~G~l~~~~~~~~~l 383 (985)
|||..|+++.++++++++
T Consensus 203 ---~g~~~G~i~~~~~~i~~~ 220 (366)
T d2aeua1 203 ---EGPRGGLLAGKKELVDKI 220 (366)
T ss_dssp ---SSCSCEEEEEEHHHHHHH
T ss_pred ---cccceeEEEecHHHHHHH
Confidence 456789999999988765
|
| >d1svva_ c.67.1.1 (A:) Low-specificity threonine aldolase {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Low-specificity threonine aldolase species: Leishmania major [TaxId: 5664]
Probab=99.44 E-value=2.6e-13 Score=146.11 Aligned_cols=281 Identities=11% Similarity=0.032 Sum_probs=157.8
Q ss_pred HHHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc--
Q 001989 211 ESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL-- 288 (985)
Q Consensus 211 ~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~-- 288 (985)
+...++++.+|+++|.+++++.+++|||.+...++.+. ..++++++++...|.+......... .....+...+.
T Consensus 35 ~~~~~lr~~ia~~~g~~~~~v~~tsggtean~~a~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 110 (340)
T d1svva_ 35 SHCAKAARLIGELLERPDADVHFISGGTQTNLIACSLA---LRPWEAVIATQLGHISTHETGAIEA-TGHKVVTAPCPDG 110 (340)
T ss_dssp HHHHHHHHHHHHHHTCTTSEEEEESCHHHHHHHHHHHH---CCTTEEEEEETTSHHHHSSTTHHHH-TTCCEEEECCTTS
T ss_pred HHHHHHHHHHHHHhCCCcceEEEcCCHHHHHHHHHHHH---hhhccccccccccceeeeecccccc-cceeeeecccccc
Confidence 34467899999999999989999999996655444332 2378899999988877654433221 22333333221
Q ss_pred ----h---hhh---c--cCCCEeEEEEEcCCCCeeec---cHHHHHHHHHhCCcEEEEEecCccccCC-CCCCcccceEE
Q 001989 289 ----K---DID---Y--KSGDVCGVLVQYPGTEGEVL---DYGDFIKNAHANGVKVVMATDLLALTIL-KPPGELGADIV 352 (985)
Q Consensus 289 ----~---~l~---~--l~~~t~~V~v~~pn~~G~v~---di~~I~~~a~~~galliV~a~~~~lg~l-~~~~~~GaDi~ 352 (985)
+ +.. . ..+.+..++++.+|..|.+. ++..+.+.++++|++++++. ....+.+ .....+..+..
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~d~-a~~~~~~~~~~~~~~~~~~ 189 (340)
T d1svva_ 111 KLRVADIESALHENRSEHMVIPKLVYISNTTEVGTQYTKQELEDISASCKEHGLYLFLDG-ARLASALSSPVNDLTLADI 189 (340)
T ss_dssp CCCHHHHHHHHHHSCSTTSCEEEEEEEESSCTTSCCCCHHHHHHHHHHHHHHTCEEEEEC-TTHHHHHTSTTCCCCHHHH
T ss_pred cccchhHHHHhhhhhcccCCcceeeeecccccccccccHHHhhhhhcccccccceeeeec-cceeeeecccccccccccc
Confidence 1 111 1 12334445556666666553 57778899999999999953 2221111 11111111111
Q ss_pred Eec-C-ccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHH
Q 001989 353 VGS-A-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANM 430 (985)
Q Consensus 353 v~s-~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~ 430 (985)
... . ..++.+.+.++++.++........... + .......++.+ ... +..
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~-~~~~~~~~~~~----~~~-~~~ 240 (340)
T d1svva_ 190 ARLTDMFYIGATKAGGMFGEALIILNDALKPNA-----------------------R-HLIKQRGALMA----KGW-LLG 240 (340)
T ss_dssp HHHCSEEEEECTTTTCSSCEEEEECSGGGCTTH-----------------------H-HHHHHTTCCCT----TTH-HHH
T ss_pred cccceeeecCCccccccccccccccchhhhhhh-----------------------h-hhcccccCccc----hhh-HHH
Confidence 111 1 222222233344444433222111100 0 00000011111 112 222
Q ss_pred HHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCCCcceEEEecCCHHHHHHHHHHcCceee--ee--cCCe
Q 001989 431 AAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDTVKVKCADAHAIASAAYKIEMNLR--VV--DSNT 506 (985)
Q Consensus 431 aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~~~L~~~GI~~~--~~--~~~~ 506 (985)
++. +.++...+.....++...++.++...|++.| +++..+...+.+.+..+ .++.++|.++++... .. ..+.
T Consensus 241 aa~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g-~~~~~p~~~~~v~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~ 316 (340)
T d1svva_ 241 IQF-EVLMKDNLFFELGAHSNKMAAILKAGLEACG-IRLAWPSASNQLFPILE--NTMIAELNNDFDMYTVEPLKDGTCI 316 (340)
T ss_dssp HHH-HHHTSTTHHHHHHHHHHHHHHHHHHHHHHTT-CCBSSCCSSSEECBEEE--HHHHHHHTTTEECEEEEEETTTEEE
T ss_pred HHH-HHHhhhhHHHHHHHHHHHHHhhhHHHHhcCC-CeeecCCCceEEEEeCC--HHHHHHHHHhhhhhcccccCCCCcE
Confidence 222 2456667778888999999999999999998 88765433333333443 455666776655322 11 2468
Q ss_pred EEEEeccCCCHHHHHHHHHHHhC
Q 001989 507 VTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 507 lris~t~~~t~edId~li~aL~~ 529 (985)
+|+|++.++|+||||+|+++|++
T Consensus 317 vR~s~~~~~t~edid~~l~~l~~ 339 (340)
T d1svva_ 317 MRLCTSWATEEKECHRFVEVLKR 339 (340)
T ss_dssp EEEECCTTCCHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhc
Confidence 99999999999999999999973
|
| >d1b5pa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Thermus thermophilus [TaxId: 274]
Probab=99.44 E-value=2.7e-11 Score=135.60 Aligned_cols=325 Identities=14% Similarity=0.131 Sum_probs=191.1
Q ss_pred HHHHHHHHHhcCCCccceecCCCCCCCCCcHHHHHHH---HhCCccccccCCChhhHhhhHHHHHHHHHHHHHHhcC--C
Q 001989 152 QMIEHMQKLASMNKVYKSFIGMGYYNTHVPPVILRNI---MENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTG--L 226 (985)
Q Consensus 152 e~~~~~~~l~~~n~~~~~~lG~g~y~~~~p~~v~~~i---~~~~~~~t~~~pyq~e~sqg~l~~i~e~q~~ia~L~g--~ 226 (985)
++.+..+++..++....+ ++.|-=+...|+.+.+++ +.++ .+.|+|.+ |..+.-....+.+.+-.| .
T Consensus 18 ~i~~~a~~~~~~G~~vi~-l~~g~p~~~~p~~i~~a~~~~~~~~--~~~Y~~~~-----G~~~lR~~ia~~~~~~~~~~~ 89 (382)
T d1b5pa_ 18 AVNAKALELRRQGVDLVA-LTAGEPDFDTPEHVKEAARRALAQG--KTKYAPPA-----GIPELREALAEKFRRENGLSV 89 (382)
T ss_dssp HHHHHHHHHHHTTCCCEE-CCCSSCSSCCCHHHHHHHHHHHHTT--CCSCCCTT-----CCHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHhCCCCeEE-CCCCCCCCCCCHHHHHHHHHHHhcC--CcCCCCCC-----CCHHHHHHHHhhhhhhccccc
Confidence 445555556555654333 245543344677664433 3332 45665533 332222222233333334 4
Q ss_pred CCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc----------hhhhc-cC
Q 001989 227 PMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL----------KDIDY-KS 295 (985)
Q Consensus 227 ~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~----------~~l~~-l~ 295 (985)
++.++.+++|++.++..++.++. ++||+|+++.-.++.+...++. .|.+++.++. +++++ ++
T Consensus 90 ~~~~i~it~G~~~al~~~~~~l~---~~gd~vl~~~P~y~~~~~~~~~----~g~~~~~v~~~~~~~~~~d~~~l~~~~~ 162 (382)
T d1b5pa_ 90 TPEETIVTVGGSQALFNLFQAIL---DPGDEVIVLSPYWVSYPEMVRF----AGGVVVEVETLPEEGFVPDPERVRRAIT 162 (382)
T ss_dssp CGGGEEEESHHHHHHHHHHHHHC---CTTCEEEEEESCCTHHHHHHHH----TTCEEEEEECCGGGTTCCCHHHHHTTCC
T ss_pred ccccceecCCHHHHHHHHHHHhC---CCCCEEEECCCCcHHHHHHHHH----hcCeEEEEecccccccCCCHHHHHHhCC
Confidence 66799999999888777666552 3899999999999988877653 4777777643 34555 77
Q ss_pred CCEeEEEEEcC-CCCeeec---cHHHHHHHHHhCCcEEEEEecCccccCC----CCCCc--ccceEEEecC-ccccccCC
Q 001989 296 GDVCGVLVQYP-GTEGEVL---DYGDFIKNAHANGVKVVMATDLLALTIL----KPPGE--LGADIVVGSA-QRFGVPMG 364 (985)
Q Consensus 296 ~~t~~V~v~~p-n~~G~v~---di~~I~~~a~~~galliV~a~~~~lg~l----~~~~~--~GaDi~v~s~-k~lg~P~~ 364 (985)
++++++++.+| |++|.+- ++++|+++|+++|++++.| +..+.-.. ..+.. ..--|+++|. |.|+.|
T Consensus 163 ~~~~~i~~~~P~NPTG~~~s~~~~~~l~~~~~~~~~~ii~D-e~y~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~-- 239 (382)
T d1b5pa_ 163 PRTKALVVNSPNNPTGAVYPKEVLEALARLAVEHDFYLVSD-EIYEHLLYEGEHFSPGRVAPEHTLTVNGAAKAFAMT-- 239 (382)
T ss_dssp TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEE-CTTTTCBSSSCCCCGGGTCTTTEEEEEESTTTTTCG--
T ss_pred CCCeEEEECCCCCCcchhCCHHHHHHHHHHHHHcCeEEEEE-ccccceecCCCCCCHHHcCCCCEEEEecchhhccCc--
Confidence 88999999998 8899885 5888999999999999995 33321111 11111 1123667775 888644
Q ss_pred CCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHH-HHHHHHHHHHhCcchH
Q 001989 365 YGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALL-ANMAAMYAVYHGPEGL 443 (985)
Q Consensus 365 ~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~-a~~aa~~l~~~g~~Gl 443 (985)
|=-+|+++..+++++.+- . . +.....+++.... +..+.+........-+
T Consensus 240 --GlR~G~~~~~~~~i~~~~--------~-----------------~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (382)
T d1b5pa_ 240 --GWRIGYACGPKEVIKAMA--------S-----------------V---SRQSTTSPDTIAQWATLEALTNQEASRAFV 289 (382)
T ss_dssp --GGCCEEEECCHHHHHHHH--------H-----------------H---HHTTTCSCCHHHHHHHHHHHHCHHHHHHHH
T ss_pred --HhheEEEEECHHHHHHHH--------H-----------------H---HHhcccCcccccccccccccccccchhHHH
Confidence 223689888877765430 0 0 0001111111111 1111110011111223
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCeEEcCC--CCcceEEEecCC----HHHHHHHHHHcCceeeee----cCCeEEEEecc
Q 001989 444 KTIAQRVHGLAGTFALGLKKLGTVEVQGL--PFFDTVKVKCAD----AHAIASAAYKIEMNLRVV----DSNTVTASFDE 513 (985)
Q Consensus 444 ~~i~~~~~~~a~~l~~~L~~~g~~~~~~~--~~~~~~~~~~~~----~~~v~~~L~~~GI~~~~~----~~~~lris~t~ 513 (985)
+...+...++.+.+.+.+.+.| ++...+ .++ +-++.+. ...+.+.|.++||.+.+- ..+.+|+++.
T Consensus 290 ~~~~~~~~~~~~~~~~~l~~~g-~~~~~p~gg~~--~~~~~~~~~~~~~~~~~~l~e~gV~v~PG~~F~~~~~iRis~~- 365 (382)
T d1b5pa_ 290 EMAREAYRRRRDLLLEGLTALG-LKAVRPSGAFY--VLMDTSPIAPDEVRAAERLLEAGVAVVPGTDFAAFGHVRLSYA- 365 (382)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT-CCBCCCSBTTE--EEEECTTTCSSHHHHHHHHHHTTEECEESGGGTCTTEEEEECC-
T ss_pred HHHHHHHHhhhhHHHHHHhhcC-CeEecCCceEE--EeEeCCCCCCCHHHHHHHHHHCCEEEEeCcccCCCCeEEEEEc-
Confidence 4455555666777888888877 765422 122 2334432 778889999999987542 2578999985
Q ss_pred CCCHHHHHHHHHHHhC
Q 001989 514 TTTLEDVDKLFIVFAG 529 (985)
Q Consensus 514 ~~t~edId~li~aL~~ 529 (985)
.++|+|++.++.|.+
T Consensus 366 -~~~e~l~~al~rl~~ 380 (382)
T d1b5pa_ 366 -TSEENLRKALERFAR 380 (382)
T ss_dssp -SCHHHHHHHHHHGGG
T ss_pred -CCHHHHHHHHHHHHH
Confidence 478888888887763
|
| >d1w23a_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Bacillus alcalophilus [TaxId: 1445]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Bacillus alcalophilus [TaxId: 1445]
Probab=99.44 E-value=1.3e-13 Score=153.13 Aligned_cols=308 Identities=11% Similarity=0.014 Sum_probs=158.5
Q ss_pred hhHHHHHHHHHHHHHHHhCCCcc-c-eecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCC-ccc-HHHHHHCCcE
Q 001989 628 QGYQEMFNNLGEWLCTITGFDSF-S-LQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAH-GTN-PATAAMCGMK 703 (985)
Q Consensus 628 ~G~~~~~~e~~~~la~l~G~~~~-~-~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~H-g~~-~~~a~~~G~~ 703 (985)
+-+.++++++++.+++++|.+.. . ++.++++++...+ +... . ..+++++++....| +.. ...+...+..
T Consensus 44 ~~~~~~~~~~r~~l~~l~~~~~~~~i~~~~gt~~~~~~~--~~~~-~----~~~~~~v~~~~~g~~~~~~~~~~~~~~~~ 116 (360)
T d1w23a_ 44 QSYEEVHEQAQNLLRELLQIPNDYQILFLQGGASLQFTM--LPMN-L----LTKGTIGNYVLTGSWSEKALKEAKLLGET 116 (360)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHH--HHHH-H----CCTTCEEEEEECSHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHH--HHhh-h----cccCcccceeeccchhhhhHHHHHHhhhc
Confidence 44567889999999999999764 2 3334333332211 1111 1 13556666643211 111 1224556766
Q ss_pred EEEEcCCCCCCCCHHHHHHHHHhcCCCEEEEEEEcCCCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCccC
Q 001989 704 IVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIG 783 (985)
Q Consensus 704 vv~v~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~pn~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~g 783 (985)
++.+...+....++++++..+. .. ..+.++ |.+|++. |+++|+++||++|++++||++|+++...+ +..+|+
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~--~~tg~~~-~~~~i~~~~~~~g~l~ivDavqs~g~~~i-d~~~~~ 188 (360)
T d1w23a_ 117 HIAASTKANSYQSIPDFSEFQL---NE-NDAYLH--ITSNNTI-YGTQYQNFPEINHAPLIADMSSDILSRPL-KVNQFG 188 (360)
T ss_dssp EEEEECGGGTSCSCCCGGGCCC---CT-TEEEEE--EESEETT-TTEECSSCCCCCSSCEEEECTTTTTSSCC-CGGGCS
T ss_pred ceeeccccccccchhhhhhccc---cc-ccceeE--ecCCccc-cceeeeeccccceeeEEeecccccccccc-cccccc
Confidence 6666554333344444444432 22 223333 3579998 89999999999999999999997554332 557888
Q ss_pred CcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCC-CCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHH
Q 001989 784 ADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGG-IPAPEKSQPLGTIAAAPWGSALILPISYTYIAM 862 (985)
Q Consensus 784 ~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~-~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~ 862 (985)
+|+++++.||++ +|+.|+++.++......+....+.... ...+ ..+....... .......+...+..
T Consensus 189 vd~~~~~~~k~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~--~~~~~~~~~~~~~~ 256 (360)
T d1w23a_ 189 MIYAGAQKNLGP-------SGVTVVIVKKDLLNTKVEQVPTMLQYATHIKS---DSLYNTPPTF--SIYMLRNVLDWIKD 256 (360)
T ss_dssp EEEEETTTTTSC-------TTCEEEEEEHHHHCSCCTTCCGGGCHHHHHHT---TTCSSCCCHH--HHHHHHHHHHHHHH
T ss_pred ceEEeecccccc-------CCcceeeEechhhhcccccCCcchhhhhhhhh---hhhcccccce--eeechhHHHHHHhh
Confidence 999888877753 355666666654433222111110000 0000 0011111110 11111112222222
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHHhhc--cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCCCC
Q 001989 863 MGSKGLTEASKIAILNANYMAKRLEK--HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWP 940 (985)
Q Consensus 863 lg~eGl~~~~~~~~~~a~~l~~~L~~--g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~~p 940 (985)
.+. .....++....+......... ........+.......+.+.++ .+....++.+.|.++||.+.. .+.
T Consensus 257 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rS~~vvsf~i~-----~~~~~~~~~~~l~~~GI~~~~-G~~ 328 (360)
T d1w23a_ 257 LGG--AEAIAKQNEEKAKIIYDTIDESNGFYVGHAEKGSRSLMNVTFNLR-----NEELNQQFLAKAKEQGFVGLN-GHR 328 (360)
T ss_dssp TTH--HHHHHHHHHHHHHHHHHHHHTTTTSSEESSCGGGBCSSEEEEECS-----SHHHHHHHHHHHHHTTEESCB-CCT
T ss_pred hhh--hHHHHHHHHHHHHHHHHHHhhcccccccCCChhhcceeEEEEEcC-----CCccHHHHHHHHHHCCCeeee-CCC
Confidence 222 122222223333333333332 2222111111111112345543 134567899999999998642 122
Q ss_pred CCCEEEEeccCCCCHHHHHHHHccCChhHHHH
Q 001989 941 VPGTLMIEPTESESKSWTGIVMLSSPSEKKLH 972 (985)
Q Consensus 941 ~~~~lris~t~~~t~eeId~~~~~~~l~~~~~ 972 (985)
..+.+|||+-.++|.|||++ +++.+++..+
T Consensus 329 ~~ggiRiS~~~~~t~e~V~~--Li~~~~~~~~ 358 (360)
T d1w23a_ 329 SVGGCRASIYNAVPIDACIA--LRELMIQFKE 358 (360)
T ss_dssp TTCSEEEECCTTSCHHHHHH--HHHHHHHHHH
T ss_pred ccCcEEEEeeCCCCHHHHHH--HHHHHHHHHh
Confidence 22579999877889999999 6677776554
|
| >d1j32a_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Phormidium lapideum [TaxId: 32060]
Probab=99.43 E-value=2.3e-11 Score=136.59 Aligned_cols=319 Identities=13% Similarity=0.109 Sum_probs=191.0
Q ss_pred HHHhcCCCccceecCCCCCCCCCcHHHHHHHH---hCCccccccCCChhhHhhhHHHHHHHHHHHHHHhcCC--CCccee
Q 001989 158 QKLASMNKVYKSFIGMGYYNTHVPPVILRNIM---ENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGL--PMSNAS 232 (985)
Q Consensus 158 ~~l~~~n~~~~~~lG~g~y~~~~p~~v~~~i~---~~~~~~t~~~pyq~e~sqg~l~~i~e~q~~ia~L~g~--~~~~~s 232 (985)
+++...++..-+| +.|.=++..|+.+.+++. .++ .+.|+|-+ |..+.-....+.+.+..|. ++.++.
T Consensus 23 ~~~~~~g~~vi~l-~~G~p~~~~p~~v~~a~~~~~~~~--~~~Y~~~~-----G~~~lR~aia~~~~~~~g~~~~~~~i~ 94 (388)
T d1j32a_ 23 KAMKAEGIDVCSF-SAGEPDFNTPKHIVEAAKAALEQG--KTRYGPAA-----GEPRLREAIAQKLQRDNGLCYGADNIL 94 (388)
T ss_dssp HHHHTTTCCCEEC-CCSSCSSCCCHHHHHHHHHHHHTT--CCSCCCTT-----CCHHHHHHHHHHHHHHHCCCCCGGGEE
T ss_pred HHHHHCCCCeEEC-CCCCCCCCCCHHHHHHHHHHHhcC--CCCCCCCC-----CCHHHHHHHHHHHHHhcccCCCCceEE
Confidence 4444445443333 455434456776654443 332 34565432 3222222222333344454 567899
Q ss_pred eccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc----------hhhhc-cCCCEeEE
Q 001989 233 LLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL----------KDIDY-KSGDVCGV 301 (985)
Q Consensus 233 l~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~----------~~l~~-l~~~t~~V 301 (985)
+++|++.++..++.++. ++||+|++++-.++.+...++. .|.+++.++. +++++ ++++++++
T Consensus 95 it~G~~~al~~~~~~~~---~~gd~Vlv~~P~y~~~~~~~~~----~~~~~v~~~~~~~~~~~~d~~~l~~~~~~~~~~~ 167 (388)
T d1j32a_ 95 VTNGGKQSIFNLMLAMI---EPGDEVIIPAPFWVSYPEMVKL----AEGTPVILPTTVETQFKVSPEQIRQAITPKTKLL 167 (388)
T ss_dssp EESHHHHHHHHHHHHHC---CTTCEEEEESSCCTHHHHHHHH----TTCEEEEECCCGGGTTCCCHHHHHHHCCTTEEEE
T ss_pred EcCCHHHHHHHHHHHHh---CCCCEEEEcCCCcHHHHHHHHH----hcCeEEEEecccccccCCCHHHHHHhCCCCCeEE
Confidence 99999988777666542 3899999999999998887754 3455555432 45666 78899999
Q ss_pred EEEcC-CCCeeec---cHHHHHHHHHhCCcEEEEEecCccccCCCCC-----Cc-----ccceEEEecC-ccccccCCCC
Q 001989 302 LVQYP-GTEGEVL---DYGDFIKNAHANGVKVVMATDLLALTILKPP-----GE-----LGADIVVGSA-QRFGVPMGYG 366 (985)
Q Consensus 302 ~v~~p-n~~G~v~---di~~I~~~a~~~galliV~a~~~~lg~l~~~-----~~-----~GaDi~v~s~-k~lg~P~~~G 366 (985)
++.+| |++|.+. ++++|+++|+++|+++++| +..+......+ .. ..-.|++.|. |.|+.|
T Consensus 168 ~~~~P~NPTG~~~~~~~~~~l~~~~~~~~~~iI~D-e~Y~~~~~~~~~~~s~~~~~~~~~~~~i~~~S~SK~~~~~---- 242 (388)
T d1j32a_ 168 VFNTPSNPTGMVYTPDEVRAIAQVAVEAGLWVLSD-EIYEKILYDDAQHLSIGAASPEAYERSVVCSGFAKTYAMT---- 242 (388)
T ss_dssp EEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEE-CTTTTCBCTTCCCCCGGGSCHHHHHTEEEEEESTTTTTCT----
T ss_pred EECCCCCCCCcccchhhhhhhhcccccCCeEEEch-hhhhcccccCCCCCCHHHhCcccccceeEecCChhhhhcc----
Confidence 99998 8899875 5888899999999999995 33322111111 11 1235677776 887643
Q ss_pred CCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcchHHHH
Q 001989 367 GPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTI 446 (985)
Q Consensus 367 GP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i 446 (985)
|=-+|++...+++++.+- +.....+.+++.. +..++......+.+-+++.
T Consensus 243 GlRvG~~~~~~~~~~~~~----------------------------~~~~~~~~~~~~~--~q~a~~~~~~~~~~~~~~~ 292 (388)
T d1j32a_ 243 GWRVGFLAGPVPLVKAAT----------------------------KIQGHSTSNVCTF--AQYGAIAAYENSQDCVQEM 292 (388)
T ss_dssp TTCCEEEECCHHHHHHHH----------------------------HHHHTTTCSCCHH--HHHHHHHHHHSCSHHHHHH
T ss_pred hhHeEEEEECHHHHHHHH----------------------------HhhhhccccccHH--HHHHHhhcccchHHHHHHH
Confidence 123688888877665430 0000011111111 1122222223455667888
Q ss_pred HHHHHHHHHHHHHHHhcCCCeEEcCCCCcceEE-EecC--C--HHHHHHHHH-HcCceeeee----cCCeEEEEeccCCC
Q 001989 447 AQRVHGLAGTFALGLKKLGTVEVQGLPFFDTVK-VKCA--D--AHAIASAAY-KIEMNLRVV----DSNTVTASFDETTT 516 (985)
Q Consensus 447 ~~~~~~~a~~l~~~L~~~g~~~~~~~~~~~~~~-~~~~--~--~~~v~~~L~-~~GI~~~~~----~~~~lris~t~~~t 516 (985)
.+...++.+++.+.|++++|+++..+ ...-+. ++.+ . ..++.++|. ++||.+.+- .++++|+++. ++
T Consensus 293 ~~~~~~~~~~~~~~l~~~~g~~~~~p-~gg~~l~~~l~~~~~~~~~~~~~ll~~~gV~v~pG~~F~~~~~~Rls~~--~~ 369 (388)
T d1j32a_ 293 LAAFAERRRYMLDALNAMPGLECPKP-DGAFYMFPSIAKTGRSSLDFCSELLDQHQVATVPGAAFGADDCIRLSYA--TD 369 (388)
T ss_dssp HHHHHHHHHHHHHHHHTCTTCBCCCC-CBTTEECCBCGGGTCCHHHHHHHHHHHHCEECEEGGGGTCTTBEEEECC--SC
T ss_pred HHHHHHHHHHHHHHHHhCCCCEecCC-CceEEEEEECCCCCCCHHHHHHHHHHhCCEEEEeccccCCCCeEEEEEe--CC
Confidence 88888999999999998854765432 111122 2332 1 667877775 569987432 2588999986 57
Q ss_pred HHHHHHHHHHHhC
Q 001989 517 LEDVDKLFIVFAG 529 (985)
Q Consensus 517 ~edId~li~aL~~ 529 (985)
+|+|++.++.|++
T Consensus 370 ~e~l~~al~rl~~ 382 (388)
T d1j32a_ 370 LDTIKRGMERLEK 382 (388)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8888777776653
|
| >d1m6sa_ c.67.1.1 (A:) Low-specificity threonine aldolase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Low-specificity threonine aldolase species: Thermotoga maritima [TaxId: 2336]
Probab=99.42 E-value=8.5e-13 Score=143.75 Aligned_cols=273 Identities=15% Similarity=0.137 Sum_probs=157.3
Q ss_pred HHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc---
Q 001989 212 SLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL--- 288 (985)
Q Consensus 212 ~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~--- 288 (985)
.+.++|+.+|+++|.+. +.++++||.+.++++.+.. ++++.++++...|.++...... +...+..+..++.
T Consensus 35 ~~~~le~~lA~~~G~~~--~~~~~sGt~A~~~al~a~~---~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 108 (343)
T d1m6sa_ 35 TINELERLAAETFGKEA--ALFVPSGTMGNQVSIMAHT---QRGDEVILEADSHIFWYEVGAM-AVLSGVMPHPVPGKNG 108 (343)
T ss_dssp HHHHHHHHHHHHTTCSE--EEEESCHHHHHHHHHHHHC---CTTCEEEEETTCHHHHSSTTHH-HHHTCCEEEEECEETT
T ss_pred HHHHHHHHHHHHHCCCe--EEEeCCHHHHHHHHHHHHh---ccCCceeccccccceeeecccc-cccccceeeccccccC
Confidence 46678899999999875 7788999988777766543 3789999999988766543321 1123455554433
Q ss_pred ----hhhhc-cC------CCEeEEEEEc-CC-CCeee---ccHHHHHHHHHhCCcEEEEEecCccccCC---CCC---Cc
Q 001989 289 ----KDIDY-KS------GDVCGVLVQY-PG-TEGEV---LDYGDFIKNAHANGVKVVMATDLLALTIL---KPP---GE 346 (985)
Q Consensus 289 ----~~l~~-l~------~~t~~V~v~~-pn-~~G~v---~di~~I~~~a~~~galliV~a~~~~lg~l---~~~---~~ 346 (985)
++++. +. +++..+++.. ++ ..|.+ +++++|.++|+++|++++++. ....+.. ... ..
T Consensus 109 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~g~~~~~D~-a~~~~~~~~~~~~~~~~~ 187 (343)
T d1m6sa_ 109 AMDPDDVRKAIRPRNIHFPRTSLIAIENTHNRSGGRVVPLENIKEICTIAKEHGINVHIDG-ARIFNASIASGVPVKEYA 187 (343)
T ss_dssp EECHHHHHHHSCCSCTTSCCEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCEEEEEE-TTHHHHHHHHCCCHHHHH
T ss_pred ccCHHHHHHhhhhhhcccccccccccccccccCCceecCHHHHHHHHHHHHhcCeEEEecc-ccccccccccccchhhhc
Confidence 23332 32 3456666554 44 44554 467788888999999999953 2221110 111 11
Q ss_pred ccceEEEecC-ccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhH
Q 001989 347 LGADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQA 425 (985)
Q Consensus 347 ~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~ 425 (985)
...+.++.+. ++ .||...|++....+....... .+...+.+. .....
T Consensus 188 ~~~~~~~~~~~~~------~~g~~~~~~~~~~~~~~~~~~-------------------------~~~~~~~~~-~~~~~ 235 (343)
T d1m6sa_ 188 GYADSVMFCLSKG------LCAPVGSVVVGDRDFIERARK-------------------------ARKMLGGGM-RQAGV 235 (343)
T ss_dssp HTCSEEEEESSST------TCCSSCEEEEECHHHHHHHHH-------------------------HHHHHTCCC-SSTHH
T ss_pred ccccccccccccc------ccccccccccccHHHHhhhHh-------------------------hCccccccc-chhHH
Confidence 1233333333 33 334444555555554332200 000011111 11111
Q ss_pred HHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCCCcceEEEecCC----HHHHHHHHHHcCceeee
Q 001989 426 LLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDTVKVKCAD----AHAIASAAYKIEMNLRV 501 (985)
Q Consensus 426 l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~----~~~v~~~L~~~GI~~~~ 501 (985)
+.+ +.........+..+ ...++..++.+.+.++++.........+.+.+..++ +.++.++|.++||.++.
T Consensus 236 ~~a--~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~a~~l~~~L~~~Gi~v~~ 309 (343)
T d1m6sa_ 236 LAA--AGIIALTKMVDRLK----EDHENARFLALKLKEIGYSVNPEDVKTNMVILRTDNLKVNAHGFIEALRNSGVLANA 309 (343)
T ss_dssp HHH--HHHHHHHHSSTTHH----HHHHHHHHHHHHHHHHTCBCCGGGCCSSEEEEECTTSSSCHHHHHHHHHHHTEECEE
T ss_pred HHH--hhhhhhhhhHHHHH----HHHHHHHHhhhHHHHhccCccCCCCCceEEEEEeCCCcccHHHHHHHHHHCCCEEec
Confidence 211 11111222222233 334455666666666642333322233455565543 78999999999999988
Q ss_pred ecCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 502 VDSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 502 ~~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
..++.+|++++..+|+||||+++++|++
T Consensus 310 ~~~~~iRi~~~~~~t~edid~~v~~l~~ 337 (343)
T d1m6sa_ 310 VSDTEIRLVTHKDVSRNDIEEALNIFEK 337 (343)
T ss_dssp EETTEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 7788999999999999999999999984
|
| >d2f8ja1 c.67.1.1 (A:1-334) Histidinol-phosphate aminotransferase HisC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Histidinol-phosphate aminotransferase HisC species: Thermotoga maritima [TaxId: 2336]
Probab=99.42 E-value=4.8e-11 Score=131.08 Aligned_cols=295 Identities=11% Similarity=0.082 Sum_probs=190.9
Q ss_pred ecCCCCCCCCCcHHHHHHHHhCC-ccccccCCChhhHhhhHHHHHHHHHHHHHHhcC---CCCcceeeccchHHHHHHHH
Q 001989 170 FIGMGYYNTHVPPVILRNIMENP-AWYTQYTPYQAEIAQGRLESLLNFQTMIADLTG---LPMSNASLLDEGTAAAEAMA 245 (985)
Q Consensus 170 ~lG~g~y~~~~p~~v~~~i~~~~-~~~t~~~pyq~e~sqg~l~~i~e~q~~ia~L~g---~~~~~~sl~~~~ta~~ea~~ 245 (985)
+|+.|-.|+..|+.+.+++...- .-...|.|- +|. .++++.+|+.++ .++.++.+++|++.++.++.
T Consensus 23 ~l~~~enp~~~p~~i~~~~~~~~~~~~~~~yp~-----~g~----~~Lr~aia~~~~~~~v~~d~I~it~G~~~~l~~l~ 93 (334)
T d2f8ja1 23 YLALNENPFPFPEDLVDEVFRRLNSDALRIYYD-----SPD----EELIEKILSYLDTDFLSKNNVSVGNGADEIIYVMM 93 (334)
T ss_dssp ECSSCCCSSCCCHHHHHHHHHHCCTTGGGSCCC-----SSC----HHHHHHHHHHHTCSSCCGGGEEEEEHHHHHHHHHH
T ss_pred EEECCCCCCCCCHHHHHHHHHHhhcchhcCCCC-----CCc----HHHHHHHHHHhcccCCCcceEEecCcchhHHHHHh
Confidence 57778777778888876665331 111222221 232 346678888775 45678988988887665543
Q ss_pred HHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCch-hhh--c-cCCCEeEEEEEcC-CCCeeeccHHHHHH
Q 001989 246 MCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDLK-DID--Y-KSGDVCGVLVQYP-GTEGEVLDYGDFIK 320 (985)
Q Consensus 246 ~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~~-~l~--~-l~~~t~~V~v~~p-n~~G~v~di~~I~~ 320 (985)
. .+|+|++.+-.|+.+...++. .|++++.++.+ +.. + ..++++++++.+| |.+|.+.+.++|.+
T Consensus 94 ~-------~~d~v~i~~P~y~~~~~~~~~----~g~~~v~v~~~~~~~~~~~~~~~~~~l~l~nP~NPtG~~~s~~~l~~ 162 (334)
T d2f8ja1 94 L-------MFDRSVFFPPTYSCYRIFAKA----VGAKFLEVPLTKDLRIPEVNVGEGDVVFIPNPNNPTGHVFEREEIER 162 (334)
T ss_dssp H-------HSSEEEECSSCCHHHHHHHHH----HTCCEEECCCCTTSCCCCCCCCTTEEEEEESSCTTTCCCCCHHHHHH
T ss_pred h-------hccccccccccccccccchhc----cCCccccccccccccccccccccceEEEecccccccceeecHHHhhc
Confidence 2 458999999899988877653 48899988874 222 2 3467889999998 88999999888877
Q ss_pred HHHhCCcEEEEEecCccccCCC---CCCcccceEEEecC-ccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCC
Q 001989 321 NAHANGVKVVMATDLLALTILK---PPGELGADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSG 396 (985)
Q Consensus 321 ~a~~~galliV~a~~~~lg~l~---~~~~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g 396 (985)
++ +++++++++.......... .+....--+++.|. |+++.| |=-+|++...++++..+-
T Consensus 163 ~~-~~~~~ii~Dd~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~----G~R~G~~~~~~~~i~~l~------------ 225 (334)
T d2f8ja1 163 IL-KTGAFVALDEAYYEFHGESYVDFLKKYENLAVIRTFSKAFSLA----AQRVGYVVASEKFIDAYN------------ 225 (334)
T ss_dssp HH-TTTCEEEEECTTGGGTCCCCGGGGGTCSSEEEEEESTTTSSCT----TTCEEEEEECHHHHHHHH------------
T ss_pred cc-cceeEEeecccchhhcccccccccccCceEEEEecCccccchh----hhhhhhcccchHHHHHHH------------
Confidence 64 5688888854322221111 11222233667776 887643 335789998887776541
Q ss_pred CcceeeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCCCcc
Q 001989 397 KPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFFD 476 (985)
Q Consensus 397 ~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~~~~ 476 (985)
.-+.+.++.+ ... .++..+ +-..+-+++..++..+..+++.+.|+++| +++..+ ..+
T Consensus 226 ----------------~~~~~~~~s~-~~~--~~a~~~--l~~~~~~~~~~~~~~~~r~~l~~~L~~~g-~~~~~~-~g~ 282 (334)
T d2f8ja1 226 ----------------RVRLPFNVSY-VSQ--MFAKVA--LDHREIFEERTKFIVEERERMKSALREMG-YRITDS-RGN 282 (334)
T ss_dssp ----------------HHSCTTCSCH-HHH--HHHHHH--HHTHHHHHHHHHHHHHHHHHHHHHHHHHT-CEECCC-CSS
T ss_pred ----------------Hhhcccccch-hhh--hhcccc--cccccchhhHHHHHHHHHHHHHHHHHHCC-CeECCC-Cce
Confidence 0011122211 111 111111 22344566777778888889999999998 888632 222
Q ss_pred eEEEecCC--HHHHHHHHHHcCceeeeecCCeEEEEeccCCCHHHHHHHHHHHh
Q 001989 477 TVKVKCAD--AHAIASAAYKIEMNLRVVDSNTVTASFDETTTLEDVDKLFIVFA 528 (985)
Q Consensus 477 ~~~~~~~~--~~~v~~~L~~~GI~~~~~~~~~lris~t~~~t~edId~li~aL~ 528 (985)
-+-+..+. +.++.+.|.++||.++.. ++.+|+|+. |.||+++++++|+
T Consensus 283 f~~~~~~~~~~~~~~~~L~~~GI~vr~~-~~~vRis~g---~~ee~~~l~~~l~ 332 (334)
T d2f8ja1 283 FVFVFMEKEEKERLLEHLRTKNVAVRSF-REGVRITIG---KREENDMILRELE 332 (334)
T ss_dssp EEEEECCHHHHHHHHHHHHHTTEECEEE-TTEEEEECC---CHHHHHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHHHCCCEECCC-CCeEEEEcC---CHHHHHHHHHHHh
Confidence 13445554 788999999999988753 689999975 7889999999986
|
| >d2ctza1 c.67.1.3 (A:1-421) O-acetyl-L-homoserine sulfhydrylase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: O-acetyl-L-homoserine sulfhydrylase species: Thermus thermophilus [TaxId: 274]
Probab=99.42 E-value=8.8e-12 Score=139.41 Aligned_cols=225 Identities=13% Similarity=0.101 Sum_probs=146.7
Q ss_pred HHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHH----HHHCCcEEEEEcC
Q 001989 634 FNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPAT----AAMCGMKIVSVGT 709 (985)
Q Consensus 634 ~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~----a~~~G~~vv~v~~ 709 (985)
...+++.++++-|.+.+ +.+.||-.|..++++++. ++|++||+++..+|..... ....|+++..++.
T Consensus 60 ~~~LE~~la~LE~~~~a-~~~~SGmaAi~~~~~~l~--------~~gd~il~~~~~Yg~t~~l~~~~~~~~gi~~~~~d~ 130 (421)
T d2ctza1 60 VDVLEKRLAALEGGKAA-LATASGHAAQFLALTTLA--------QAGDNIVSTPNLYGGTFNQFKVTLKRLGIEVRFTSR 130 (421)
T ss_dssp HHHHHHHHHHHHTCSEE-EEESSHHHHHHHHHHHHC--------CTTCEEEECSCCCHHHHHHHHTHHHHTTCEEEECCT
T ss_pred HHHHHHHHHHHhCCCeE-EEecChHHHHHHHHHhhc--------ccccceeecCCcCCchhHHHHHHHhhccccceeccc
Confidence 34678999999998765 445677766645555442 4789999988766544333 4578999988765
Q ss_pred CCCCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEcccccc-ccCCCCCCccCCcEE
Q 001989 710 DAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNA-QVGLTSPGYIGADVC 787 (985)
Q Consensus 710 d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~galliVD~a~~~~-~~~l~~pg~~g~Di~ 787 (985)
+ .+.+..++.++ ++|++|+++.| |++.-+. ||++|+++||++|++++||.+- + ...+.+|-++|+||+
T Consensus 131 ~----~~~~~~~~~~~---~~t~li~~EtpsNP~l~v~-Di~~i~~iA~~~g~~~vvDnT~--a~tP~~~~Pl~~GaDiV 200 (421)
T d2ctza1 131 E----ERPEEFLALTD---EKTRAWWVESIGNPALNIP-DLEALAQAAREKGVALIVDNTF--GMGGYLLRPLAWGAALV 200 (421)
T ss_dssp T----CCHHHHHHHCC---TTEEEEEEESSCTTTCCCC-CHHHHHHHHHHHTCEEEEECGG--GGGGTSCCGGGGTCSEE
T ss_pred c----cCcchhccccC---CCceEEEEcCCCcceeEec-chHHHHHHHHhcCCceEecccc--cccceeccccccCCcEE
Confidence 3 24566666676 89999999999 5777776 9999999999999999999653 3 233468999999999
Q ss_pred EeCCcccccccCCCCCC-ceEEEEEcccc-cCcCCCCccccCCC--C-CCC----C--------C---CCCCCCCCCcch
Q 001989 788 HLNLHKTFCIPHGGGGP-GMGPIGVKKHL-APFLPSHPVVSTGG--I-PAP----E--------K---SQPLGTIAAAPW 847 (985)
Q Consensus 788 ~~s~hK~l~~p~g~GGP-g~G~i~~~~~l-~~~lp~~~~g~~~~--~-~~~----~--------~---~~~~~~i~s~~~ 847 (985)
+.|..|+++ +.+- -+|.++.+++. +............. . .++ + + .+.++.+.+
T Consensus 201 vhS~TKyl~----GHsD~l~G~vv~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~s--- 273 (421)
T d2ctza1 201 THSLTKWVG----GHGAVIAGAIVDGGNFPWEGGRYPLLTEPQPGYHGLRLTEAFGELAFIVKARVDGLRDQGQALG--- 273 (421)
T ss_dssp EEETTTTTT----CSSCCCCEEEEECSCSCCTTTTCHHHHSCBGGGTTBCHHHHHGGGHHHHHHHHTHHHHHCCCCC---
T ss_pred EEechhhcc----CCCCeEEEEEEcCCcchhhhcccccccCCchhhhhhHHHHHhccHHHHHHHHHHHHHhccCCCC---
Confidence 999999985 2233 56677766532 22111000000000 0 000 0 0 000122211
Q ss_pred hhhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhccCC
Q 001989 848 GSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYP 891 (985)
Q Consensus 848 g~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~g~~ 891 (985)
--.|| +..-|-+-+.-++++..+++..+++.|++...
T Consensus 274 -----P~~a~--l~~rgl~TL~lRm~~~~~nA~~vA~~L~~hp~ 310 (421)
T d2ctza1 274 -----PFEAW--VVLLGMETLSLRAERHVENTLHLAHWLLEQPQ 310 (421)
T ss_dssp -----HHHHH--HHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTT
T ss_pred -----HHHHH--HHhcCCcchhhHHHHHHHHHHHHHhhhccCCC
Confidence 11234 44455667788889999999999999987543
|
| >d1fg7a_ c.67.1.1 (A:) Histidinol-phosphate aminotransferase HisC {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Histidinol-phosphate aminotransferase HisC species: Escherichia coli [TaxId: 562]
Probab=99.37 E-value=9.6e-11 Score=129.61 Aligned_cols=267 Identities=13% Similarity=0.119 Sum_probs=171.0
Q ss_pred HHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCC-EEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc-----
Q 001989 215 NFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKK-TFIIASNCHPQTIDICITRADGFDIKVVVSDL----- 288 (985)
Q Consensus 215 e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~-~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~----- 288 (985)
++++.+|+.+|.++.++.++.|++.++..+..++. ++|| +|+++.-.++.+...++. .|.+++.++.
T Consensus 60 ~Lr~~ia~~~gv~pe~I~it~Gs~eai~~~~~~~~---~pgd~~Vl~~~P~y~~~~~~~~~----~g~~v~~~~~~~~~~ 132 (354)
T d1fg7a_ 60 AVIENYAQYAGVKPEQVLVSRGADEGIELLIRAFC---EPGKDAILYCPPTYGMYSVSAET----IGVECRTVPTLDNWQ 132 (354)
T ss_dssp HHHHHHHHHHTSCGGGEEEESHHHHHHHHHHHHHC---CTTTCEEEECSSSCTHHHHHHHH----HTCEEEECCCCTTSC
T ss_pred HHHHHHHHHhCCChHHeeeccCchHHHHHHHHHhh---ccccccccccccccccchhhhhc----cCceeeccccccccc
Confidence 57789999999999999999999988777666552 3777 688888899888877654 4778887754
Q ss_pred ---hhhhccCCCEeEEEEEcC-CCCeeecc---HHHHHHHHHhCCcEEEEEecCcccc---C-CCCCCcccceEEEecC-
Q 001989 289 ---KDIDYKSGDVCGVLVQYP-GTEGEVLD---YGDFIKNAHANGVKVVMATDLLALT---I-LKPPGELGADIVVGSA- 356 (985)
Q Consensus 289 ---~~l~~l~~~t~~V~v~~p-n~~G~v~d---i~~I~~~a~~~galliV~a~~~~lg---~-l~~~~~~GaDi~v~s~- 356 (985)
++++...+++++|++.+| |.+|.+.+ ++.+.+.++ .+.+++++.....+. . ........--+++.|.
T Consensus 133 ~d~~~l~~~~~~~~~v~~~~pnNPtG~~~~~~~~~~~~~~~~-~~~~~iidd~~~~f~~~~~~~~~~~~~~~~iv~~S~S 211 (354)
T d1fg7a_ 133 LDLQGISDKLDGVKVVYVCSPNNPTGQLINPQDFRTLLELTR-GKAIVVADEAYIEFCPQASLAGWLAEYPHLAILRTLS 211 (354)
T ss_dssp CCHHHHHTSCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHT-TTCEEEEECTTGGGSGGGCSGGGTTTCTTEEEEEESS
T ss_pred cchhhhhhcccccceeeccCCCccceeEeeeccccccccccc-ccccccccccchhhccccccchhhcccccceEEeCCc
Confidence 234332357999999998 68998865 444555554 466677743222221 1 1112334445777776
Q ss_pred ccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHHH
Q 001989 357 QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAV 436 (985)
Q Consensus 357 k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~ 436 (985)
|.|+.| |=-+|++..++++++.+- +.+...++++. ....+++
T Consensus 212 K~~~la----GlRiGy~i~~~~~i~~l~----------------------------~~~~~~~~~~~--~~~~a~~---- 253 (354)
T d1fg7a_ 212 KAFALA----GLRCGFTLANEEVINLLM----------------------------KVIAPYPLSTP--VADIAAQ---- 253 (354)
T ss_dssp STTCCG----GGCCEEEEECHHHHHHHH----------------------------HHSCSSCSCHH--HHHHHHH----
T ss_pred cccCCC----ccccccccccchhhhhhh----------------------------hhcCccchhhH--HHHHHHH----
Confidence 888654 234699998888776541 01111222221 1111111
Q ss_pred HhCcch---HHHHHHHHHHHHHHHHHHHhcCCCeEEcCCCCcceEEEecCCHHHHHHHHHHcCceeeeec-----CCeEE
Q 001989 437 YHGPEG---LKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDTVKVKCADAHAIASAAYKIEMNLRVVD-----SNTVT 508 (985)
Q Consensus 437 ~~g~~G---l~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~~~L~~~GI~~~~~~-----~~~lr 508 (985)
.+..+. +....++..+..+++.+.|.+++++..+.+...+=+-++.+++.++.+.|.++||.++... ++++|
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~r~~l~~~l~~~~~~~~~~p~~~~f~~~~~~~~~~~~~~L~~~gIlvr~~~~~~~~~~~lR 333 (354)
T d1fg7a_ 254 ALSPQGIVAMRERVAQIIAEREYLIAALKEIPCVEQVFDSETNYILARFKASSAVFKSLWDQGIILRDQNKQPSLSGCLR 333 (354)
T ss_dssp HTSHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTEEEECCCSSSEEEEEETTHHHHHHHHHHTTEECEECTTSTTCTTEEE
T ss_pred HHhhhccccccccchhhhhHHHHHHHHHHhCCCcceeCCCCceEEEEeCCCHHHHHHHHHHCCcEEecCCCCCCCCCEEE
Confidence 122222 2333345566678888999998755433221111234566678889999999999886531 58999
Q ss_pred EEeccCCCHHHHHHHHHHHhCC
Q 001989 509 ASFDETTTLEDVDKLFIVFAGG 530 (985)
Q Consensus 509 is~t~~~t~edId~li~aL~~~ 530 (985)
+|+. |+||.++|+++|+.+
T Consensus 334 isig---t~ee~~~~l~aLka~ 352 (354)
T d1fg7a_ 334 ITVG---TREESQRVIDALRAE 352 (354)
T ss_dssp EECC---CHHHHHHHHHHHHTC
T ss_pred EEeC---CHHHHHHHHHHHhhc
Confidence 9975 899999999999854
|
| >d1d2fa_ c.67.1.3 (A:) Modulator in mal gene expression, MalY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Modulator in mal gene expression, MalY species: Escherichia coli [TaxId: 562]
Probab=99.35 E-value=1.7e-10 Score=127.90 Aligned_cols=304 Identities=12% Similarity=0.082 Sum_probs=171.0
Q ss_pred CCCCcHHHHHHHHhC-CccccccCCChhhHhhhHHHHHHHHHHHHHHhcCC--CCcceeeccchHHHHHHHHHHhhhhcC
Q 001989 177 NTHVPPVILRNIMEN-PAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGL--PMSNASLLDEGTAAAEAMAMCNNIQKG 253 (985)
Q Consensus 177 ~~~~p~~v~~~i~~~-~~~~t~~~pyq~e~sqg~l~~i~e~q~~ia~L~g~--~~~~~sl~~~~ta~~ea~~~a~~~~~~ 253 (985)
+...|+.|.+++.++ .+-.+.|+|++.. . ..++ ..+.+.+..|. +++++.+++|++.++.++..++. +
T Consensus 10 df~~p~~i~eal~~~~~~~~~~Y~~~~g~--~-lr~~---ia~~~~~~~g~~~~~~~i~it~G~~~~l~~~~~~l~---~ 80 (361)
T d1d2fa_ 10 DFATAPCIIEALNQRLMHGVFGYSRWKND--E-FLAA---IAHWFSTQHYTAIDSQTVVYGPSVIYMVSELIRQWS---E 80 (361)
T ss_dssp SSCCCHHHHHHHHHHHTTCCCCCCCSCCH--H-HHHH---HHHHHHHHSCCCCCGGGEEEESCHHHHHHHHHHHSS---C
T ss_pred CCCCCHHHHHHHHHHHhCCCCCCCCCCCH--H-HHHH---HHHHHHHHhCCCCCcceEEEeCCHHHHHHHHhhhcc---c
Confidence 344677776554432 1113356655431 0 1122 22344555575 45789999999998887776652 3
Q ss_pred CCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc-----------hhhhc-c-CCCEeEEEEEcC-CCCeeec---cHH
Q 001989 254 KKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL-----------KDIDY-K-SGDVCGVLVQYP-GTEGEVL---DYG 316 (985)
Q Consensus 254 ~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~-----------~~l~~-l-~~~t~~V~v~~p-n~~G~v~---di~ 316 (985)
+||+|++++-.|+.+...++. .|.+++.++. +++++ + +++++++++.+| |.+|.+- ++.
T Consensus 81 ~gd~Vlv~~P~y~~~~~~~~~----~g~~~~~v~~~~~~~~~~~d~~~~~~~~~~~~~~~i~l~~p~NPTG~~~s~~~~~ 156 (361)
T d1d2fa_ 81 TGEGVVIHTPAYDAFYKAIEG----NQRTVMPVALEKQADGWFCDMGKLEAVLAKPECKIMLLCSPQNPTGKVWTCDELE 156 (361)
T ss_dssp TTCEEEEEESCCHHHHHHHHH----TTCEEEEEECEECSSSEECCHHHHHHHHTSTTEEEEEEESSCTTTCCCCCTTHHH
T ss_pred cccccccccccccchhHHHHh----hcceEEeecccccccccccccccchhhcccCCceeEEecccccccccccchhhhh
Confidence 899999999999998887753 3555554432 33444 3 578999999998 7899775 488
Q ss_pred HHHHHHHhCCcEEEEEecCccccCC----CCC-Cc--ccceEEEecC-ccccccCCCCCCcEEEEEEchhhHhcCCCcee
Q 001989 317 DFIKNAHANGVKVVMATDLLALTIL----KPP-GE--LGADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIV 388 (985)
Q Consensus 317 ~I~~~a~~~galliV~a~~~~lg~l----~~~-~~--~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~v 388 (985)
+|+++|+++|+++++| +..+.-.. ..+ .. .+-.+++.++ |.++.| |..+|++.+........
T Consensus 157 ~i~~~~~~~~~~lI~D-e~y~~~~~~~~~~~~~~~~~~~~~v~~~s~SK~~~~~----g~R~g~~~~~~~~~~~~----- 226 (361)
T d1d2fa_ 157 IMADLCERHGVRVISD-EIHMDMVWGEQPHIPWSNVARGDWALLTSGSKSFNIP----ALTGAYGIIENSSSRDA----- 226 (361)
T ss_dssp HHHHHHHHTTCEEEEE-CTTTTCBCSSSCCCCGGGTCCSSEEEEECSHHHHTCG----GGCCEEEEECSHHHHHH-----
T ss_pred hhhhhhhhhheeeeec-ccccccccccccccccccccccccccccccccccccc----cccceeeecchhHHHHH-----
Confidence 9999999999999995 33221111 111 11 2223556665 878644 34567776653221100
Q ss_pred eeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCC-Ce
Q 001989 389 GVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLG-TV 467 (985)
Q Consensus 389 G~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g-~~ 467 (985)
....-..+...++ ....+..+++.......+-.+++.....++.+.+.+.+.+.+ ++
T Consensus 227 ---------------------~~~~~~~~~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 284 (361)
T d1d2fa_ 227 ---------------------YLSALKGRDGLSS-PSVLALTAHIAAYQQGAPWLDALRIYLKDNLTYIADKMNAAFPEL 284 (361)
T ss_dssp ---------------------HHHHHHTTSCCCS-CCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCSSC
T ss_pred ---------------------Hhhhccccccccc-chhhhHHHHHHHhhccchhhhcccccchhhHHHHHHHhhhhcccc
Confidence 0000011111111 122233343332333333445566666666666666665531 23
Q ss_pred EEcCCCCcc-eEEEecC----CHHHHHHHHHHc-Cceeee---e---cCCeEEEEeccCCCHHHHHHHHHHHh
Q 001989 468 EVQGLPFFD-TVKVKCA----DAHAIASAAYKI-EMNLRV---V---DSNTVTASFDETTTLEDVDKLFIVFA 528 (985)
Q Consensus 468 ~~~~~~~~~-~~~~~~~----~~~~v~~~L~~~-GI~~~~---~---~~~~lris~t~~~t~edId~li~aL~ 528 (985)
.+.. |... -+-++++ +..++.++|.++ ||.+.+ . ..+.+|+|+. .++|++++.++.|.
T Consensus 285 ~~~~-p~gg~~~~~~l~~~~~~~~~~~~~Ll~~~gv~v~pG~~F~~~~~~~vRis~~--~~~e~l~~al~rl~ 354 (361)
T d1d2fa_ 285 NWQI-PQSTYLAWLDLRPLNIDDNALQKALIEQEKVAIMPGYTYGEEGRGFVRLNAG--CPRSKLEKGVAGLI 354 (361)
T ss_dssp CCCC-CSBCSEEEEECGGGCCCHHHHHHHHHHTTCEECEEGGGGCGGGTTEEEEECC--SCHHHHHHHHHHHH
T ss_pred cccc-cCceeEEEEEccCCCCCHHHHHHHHHHhCCEEEEeccccCCCCCCEEEEEEc--CCHHHHHHHHHHHH
Confidence 3332 2111 1223332 288899988665 998742 1 2467999985 46777776666655
|
| >d2fnua1 c.67.1.4 (A:2-372) Spore coat polysaccharide biosynthesis protein C {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Spore coat polysaccharide biosynthesis protein C species: Helicobacter pylori [TaxId: 210]
Probab=99.34 E-value=4.6e-11 Score=133.20 Aligned_cols=281 Identities=12% Similarity=0.045 Sum_probs=181.2
Q ss_pred HHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCch---
Q 001989 213 LLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDLK--- 289 (985)
Q Consensus 213 i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~~--- 289 (985)
+.+|++.+|+++|.+. +..+++||+|..+++.++....+++++|++|...++++..++.. .|.+++.+|.+
T Consensus 33 v~~fE~~~~~~~g~k~--ai~~~Sgt~Al~~al~al~~~~~~~~eVi~p~~t~~a~~~ai~~----~G~~pv~vDi~~~~ 106 (371)
T d2fnua1 33 SLLFEEALCEFLGVKH--ALVFNSATSALLTLYRNFSEFSADRNEIITTPISFVATANMLLE----SGYTPVFAGIKNDG 106 (371)
T ss_dssp HHHHHHHHHHHHTCSE--EEEESCHHHHHHHHHHHSSCCCTTSCEEEECSSSCTHHHHHHHH----TTCEEEECCBCTTS
T ss_pred HHHHHHHHHHHHCcCe--EEEEecHHHHHHHHHHHhcccCCCCCeeecccccccccceeeec----cCcccccccccccc
Confidence 5568899999999885 77889999998888888765423566999999999999988754 59999998763
Q ss_pred -----hhhc-cCCCEeEEEEEcCCCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCC---CCCcccceEEEecC---c
Q 001989 290 -----DIDY-KSGDVCGVLVQYPGTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILK---PPGELGADIVVGSA---Q 357 (985)
Q Consensus 290 -----~l~~-l~~~t~~V~v~~pn~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~---~~~~~GaDi~v~s~---k 357 (985)
++++ ++++|++|++++ .+|...|+++|.++|+++|++++-|+ .+++|... ..|.+| |+.+.|. |
T Consensus 107 ~~~~~~~~~~~~~~t~avi~vh--~~G~~~~~~~i~~~~~~~~i~lIEDa-aqa~Ga~~~~~~~G~~g-~~~~~Sf~~~K 182 (371)
T d2fnua1 107 NIDELALEKLINERTKAIVSVD--YAGKSVEVESVQKLCKKHSLSFLSDS-SHALGSEYQNKKVGGFA-LASVFSFHAIK 182 (371)
T ss_dssp SBCGGGSGGGCCTTEEEEEEEC--GGGCCCCHHHHHHHHHHHTCEEEEEC-TTCTTCEETTEETTSSS-SEEEEECCTTS
T ss_pred cccchhhhhhccchhhcccccc--ccccccccccccccccccchhhccch-hhccCceeccccCCccc-ccccccccccc
Confidence 3455 788999999886 89999999999999999999999954 45666432 124444 6667664 5
Q ss_pred cccccCCCCCCcEEEEEEch-hhHhcCC-CceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHH
Q 001989 358 RFGVPMGYGGPHAAFLATSQ-EYKRMMP-GRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYA 435 (985)
Q Consensus 358 ~lg~P~~~GGP~~G~l~~~~-~~~~~lp-~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l 435 (985)
.+. .|+ .|++.+++ ++.+++. -+..|....... .+....-|. |. -+.-+.|++-+
T Consensus 183 ~l~----~g~--GG~i~t~~~~~~~~~~~~~~~g~~~~~~~------------~~~~~~~G~-n~----r~sel~Aaigl 239 (371)
T d2fnua1 183 PIT----TAE--GGAVVTNDSELHEKMKLFRSHGMLKKDFF------------EGEVKSIGH-NF----RLNEIQSALGL 239 (371)
T ss_dssp SSC----CSS--CEEEEESCHHHHHHHHHHTBTTEEESSSS------------CEEESSCCC-BC----CCCHHHHHHHH
T ss_pred ccc----ccc--ceEEEeechhhhhhccccccccccccccc------------ccccccccc-cc----cccchhhhhhh
Confidence 443 333 36666654 4444431 111121100000 000001111 11 01112233322
Q ss_pred HHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCC-----CCcceEEEecCC-----HHHHHHHHHHcCceeeee---
Q 001989 436 VYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGL-----PFFDTVKVKCAD-----AHAIASAAYKIEMNLRVV--- 502 (985)
Q Consensus 436 ~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~-----~~~~~~~~~~~~-----~~~v~~~L~~~GI~~~~~--- 502 (985)
..+ +-+++..++-.+++.++.+.|.+..++.+... .....+.+.... -.++.+.|.++||.++..
T Consensus 240 ~qL--~~l~~~~~~R~~~~~~y~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~r~~~~~~L~~~gI~~~~~y~p 317 (371)
T d2fnua1 240 SQL--KKAPFLMQKREEAALTYDRIFKDNPYFTPLHPLLKDKSSNHLYPILMHQKFFTCKKLILESLHKRGILAQVHYKP 317 (371)
T ss_dssp HHH--TTHHHHHHHHHHHHHHHHHHHTTCSSEEESGGGCSSCCCCSCEEEEECGGGGGGHHHHHHHHHHTTEECBCCCCC
T ss_pred hhh--hhccchhhhhhhhhhhhcccccccccccccccccccccccccccccccccchhHHHHHHHHHHHCCCCcceeCcc
Confidence 333 34677777778889999999998854676421 122233333322 467999999999965321
Q ss_pred -----------c-----------CCeEEEEeccCCCHHHHHHHHHHHh
Q 001989 503 -----------D-----------SNTVTASFDETTTLEDVDKLFIVFA 528 (985)
Q Consensus 503 -----------~-----------~~~lris~t~~~t~edId~li~aL~ 528 (985)
. ...+.+-+++.-|++|+++.++.+.
T Consensus 318 l~~~~~~~~~~~~~~~pnae~~~~~~l~LP~~~~lt~~di~~I~~~i~ 365 (371)
T d2fnua1 318 IYQYQLYQQLFNTAPLKSAEDFYHAEISLPCHANLNLESVQNIAHSVL 365 (371)
T ss_dssp GGGSHHHHHHHCCCCCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHH
T ss_pred cccCHHHHhccccCCCHHHHHHHhCeEECcCCCCCCHHHHHHHHHHHH
Confidence 0 1346666677789999999998875
|
| >d7aata_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Chicken (Gallus gallus), mitochondria [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Chicken (Gallus gallus), mitochondria [TaxId: 9031]
Probab=99.32 E-value=2.7e-12 Score=144.91 Aligned_cols=180 Identities=13% Similarity=0.097 Sum_probs=120.9
Q ss_pred hhhHHHHHHHHHHHHHHHhCCC--cccee--cCc-HHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCC
Q 001989 627 AQGYQEMFNNLGEWLCTITGFD--SFSLQ--PNA-GAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCG 701 (985)
Q Consensus 627 ~~G~~~~~~e~~~~la~l~G~~--~~~~~--~~s-Ga~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G 701 (985)
.+|..++.+.+.+++.+..+.. ...+. .++ |+.+..+...+++.+ .++||+|+++++.++.+...++..|
T Consensus 70 ~~G~~~lr~aia~~~~~~~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~l-----~~pGd~Vlv~~P~y~~y~~~~~~~g 144 (401)
T d7aata_ 70 IAGLADFTRASAELALGENSEAFKSGRYVTVQGISGTGSLRVGANFLQRF-----FKFSRDVYLPKPSWGNHTPIFRDAG 144 (401)
T ss_dssp TTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHH-----CTTCCEEEEEESCCTTHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHhccCCcccCcCceEEeccchHHHHHHHHHHhhHhh-----cCCCceEEEecCCCcchhhHHHHcC
Confidence 5686665555555554433321 11222 222 232333333334433 2588999999998988888899999
Q ss_pred cEEEEEcCCC--CCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccc--cCHHHHHHHHHHcCCEEEEEccccccccCC
Q 001989 702 MKIVSVGTDA--KGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYE--EGIDEICKIIHDNGGQVYMDGANMNAQVGL 776 (985)
Q Consensus 702 ~~vv~v~~d~--~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~--~di~eI~~la~~~galliVD~a~~~~~~~l 776 (985)
++++.+|+.+ ++..|++.+.+.+....++++++++.+| |++|.+- ..+++|.++|++++++++.|.++.. + .+
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~~p~NPTG~~~s~e~~~~l~~~a~~~~~~ii~De~Y~~-l-~~ 222 (401)
T d7aata_ 145 LQLQAYRYYDPKTCSLDFTGAMEDISKIPEKSIILLHACAHNPTGVDPRQEQWKELASVVKKRNLLAYFDMAYQG-F-AS 222 (401)
T ss_dssp CEEEEEECEETTTTEECHHHHHHHHTTSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTT-T-TT
T ss_pred CeEEEEeccccccccccHHHHHHHHhcCCCceEEEEecCCCCCccccCCHHHHHHHHHHHhcceEEEEEeccchh-h-hc
Confidence 9999999843 4678999999888655578899999998 6799985 3689999999999999999998731 1 11
Q ss_pred CC----C------CccCC-cEEEeCCcccccccCCCCCCceEEEEEcccccC
Q 001989 777 TS----P------GYIGA-DVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAP 817 (985)
Q Consensus 777 ~~----p------g~~g~-Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~ 817 (985)
.. + ...+. -+++.++.|.+++| |+++|++++..+...
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~s~sk~~~~~----G~RiG~~~~~~~~~~ 270 (401)
T d7aata_ 223 GDINRDAWALRHFIEQGIDVVLSQSYAKNMGLY----GERAGAFTVICRDAE 270 (401)
T ss_dssp SCHHHHTHHHHHHHHTTCCCEEEEECTTTSCCG----GGCEEEEEEECSSHH
T ss_pred CCcccchhhhhhhhhhhcccceeEeccccceee----ccccceeecchHHHH
Confidence 11 0 01111 25556777887654 889999998876543
|
| >d1n8pa_ c.67.1.3 (A:) Cystathionine gamma-lyase (CYS3) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-lyase (CYS3) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.30 E-value=9.2e-12 Score=138.50 Aligned_cols=207 Identities=17% Similarity=0.157 Sum_probs=140.0
Q ss_pred HHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHH----HHHCCcEEEEEcC
Q 001989 634 FNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPAT----AAMCGMKIVSVGT 709 (985)
Q Consensus 634 ~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~----a~~~G~~vv~v~~ 709 (985)
...+++.++++-|.+.+ +.+.||..|+ ++.+.+ ..++|+||++...+|..... ....|+++..++.
T Consensus 57 ~~~lE~~la~LE~~~~a-~~~sSGmaAi-~~~l~~--------l~~gd~iv~~~~~yg~t~~~~~~~l~~~gi~~~~~~~ 126 (393)
T d1n8pa_ 57 RENLERAVAALENAQYG-LAFSSGSATT-ATILQS--------LPQGSHAVSIGDVYGGTHRYFTKVANAHGVETSFTND 126 (393)
T ss_dssp HHHHHHHHHHHTTCSEE-EEESCHHHHH-HHHHHT--------SCSSCEEEEESSCCHHHHHHHHHTSTTTCSCCEEESS
T ss_pred HHHHHHHHHHHhCCceE-EEecCchhHH-Hhhhhc--------ccCCCeeeeeeeecccchhhhhhhhhcccceeEEeec
Confidence 44688999999988765 4456776555 222221 13678888876544433222 2357888887763
Q ss_pred CCCCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccCHHHHHHHHH----HcCCEEEEEccccccccCCCCCCccCC
Q 001989 710 DAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIH----DNGGQVYMDGANMNAQVGLTSPGYIGA 784 (985)
Q Consensus 710 d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~di~eI~~la~----~~galliVD~a~~~~~~~l~~pg~~g~ 784 (985)
+.++++++++ ++|++|+++.| |++.-+. ||++|+++|| ++|++++||.+- +-..+.+|-++|+
T Consensus 127 ------~~~~~~~~i~---~~t~lv~~EspsNP~l~v~-Di~~ia~~a~~~~~~~g~~lvVDnT~--atP~~~~Pl~~GA 194 (393)
T d1n8pa_ 127 ------LLNDLPQLIK---ENTKLVWIETPTNPTLKVT-DIQKVADLIKKHAAGQDVILVVDNTF--LSPYISNPLNFGA 194 (393)
T ss_dssp ------HHHHHHHHSC---SSEEEEEECSSCTTTCCCC-CHHHHHHHHHHHTTTTTCEEEEECTT--THHHHCCGGGGTC
T ss_pred ------chHHHHHHhh---hhcceeEecCcchhhhhcc-chhhhhhhhhhhcccCCceEEEecCc--cCcccCCchhhCC
Confidence 5688999997 89999999998 5677776 9999999999 678999999653 3334578999999
Q ss_pred cEEEeCCcccccccCCCCCCceEEEEEcc-cccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHh
Q 001989 785 DVCHLNLHKTFCIPHGGGGPGMGPIGVKK-HLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMM 863 (985)
Q Consensus 785 Di~~~s~hK~l~~p~g~GGPg~G~i~~~~-~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~l 863 (985)
||++.|..|+++. -+---+|.++.++ .+...+... ....+...+ + ..||. ...
T Consensus 195 DiVvhS~TKyi~G---hsDv~~G~v~~~~~~~~~~l~~~-------------~~~~G~~~~-p-------~~a~l--l~r 248 (393)
T d1n8pa_ 195 DIVVHSATKYING---HSDVVLGVLATNNKPLYERLQFL-------------QNAIGAIPS-P-------FDAWL--THR 248 (393)
T ss_dssp SEEEEETTTTTTC---SSCCCCEEEEESCHHHHHHHHHH-------------HHHHCCCCC-H-------HHHHH--HHH
T ss_pred CEEEEccccccCC---CCccccceeeecchhHHHHHHHH-------------HhhcCCCCC-h-------HHHHH--HHh
Confidence 9999999999952 2234567776664 333322110 001122221 1 12344 344
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHhhc
Q 001989 864 GSKGLTEASKIAILNANYMAKRLEK 888 (985)
Q Consensus 864 g~eGl~~~~~~~~~~a~~l~~~L~~ 888 (985)
|.+-+..+.++..+++..+++.|+.
T Consensus 249 gl~Tl~lR~~~~~~nA~~lA~~L~~ 273 (393)
T d1n8pa_ 249 GLKTLHLRVRQAALSANKIAEFLAA 273 (393)
T ss_dssp HHTTHHHHHHHHHHHHHHHHHHHTS
T ss_pred CCcchhhHHHHHHHHHHHHHHHHHh
Confidence 5566778889999999999999975
|
| >d1b9ha_ c.67.1.4 (A:) 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase) {Amycolatopsis mediterranei [TaxId: 33910]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase) species: Amycolatopsis mediterranei [TaxId: 33910]
Probab=99.29 E-value=7.2e-11 Score=132.22 Aligned_cols=281 Identities=12% Similarity=0.024 Sum_probs=177.1
Q ss_pred HHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc----
Q 001989 213 LLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL---- 288 (985)
Q Consensus 213 i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~---- 288 (985)
+.++|+.+|+++|.+. +.++++||++++++++++.+. +||+|++|...++++..++.. .|.+++.+|.
T Consensus 36 v~~fE~~~a~~~g~~~--~v~~~SGt~Al~lal~~l~~~--~gdeVi~p~~t~~a~~~ai~~----~g~~p~~~d~~~~~ 107 (384)
T d1b9ha_ 36 VNSFEREFAAHHGAAH--ALAVTNGTHALELALQVMGVG--PGTEVIVPAFTFISSSQAAQR----LGAVTVPVDVDAAT 107 (384)
T ss_dssp HHHHHHHHHHHTTCSE--EEEESCHHHHHHHHHHHTTCC--TTCEEEEESSSCTHHHHHHHH----TTCEEEEECBCTTT
T ss_pred HHHHHHHHHHHHCcCe--EEEeCCHHHHHHHHHHHcCCC--CCCEEEEeccccccccccccc----cccccccccccccc
Confidence 3457799999999886 778899999999988887554 899999999999999988753 5888888764
Q ss_pred -----hhhhc-cCCCEeEEEEEcCCCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCC---CCCcccceEEEecC---
Q 001989 289 -----KDIDY-KSGDVCGVLVQYPGTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILK---PPGELGADIVVGSA--- 356 (985)
Q Consensus 289 -----~~l~~-l~~~t~~V~v~~pn~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~---~~~~~GaDi~v~s~--- 356 (985)
+++++ ++++|++|++++ ++|...|+++|.++|+++|+.++.|+ .+++|... ..|.+| |+.+.|.
T Consensus 108 ~~~d~~~~~~~i~~~tk~i~~~~--~~g~~~d~~~i~~~~~~~~i~lieD~-a~a~ga~~~g~~~g~~g-~~~~~Sf~~~ 183 (384)
T d1b9ha_ 108 YNLDPEAVAAAVTPRTKVIMPVH--MAGLMADMDALAKISADTGVPLLQDA-AHAHGARWQGKRVGELD-SIATFSFQNG 183 (384)
T ss_dssp CCBCHHHHHHHCCTTEEEECCBC--GGGCCCCHHHHHHHHHHHTCCBCEEC-TTCTTCEETTEEGGGSS-SCEEEECCTT
T ss_pred cccchhhhccccccccccccccc--ccccccccccchhhhhhhhhhhhhhh-ceecccccCCEecCccc-ccceeccccc
Confidence 34555 789999988765 88999999999999999999999853 45666432 234555 6666553
Q ss_pred ccccccCCCCCCcEEEEEEc-hhhHhcCCC-ceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHH
Q 001989 357 QRFGVPMGYGGPHAAFLATS-QEYKRMMPG-RIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMY 434 (985)
Q Consensus 357 k~lg~P~~~GGP~~G~l~~~-~~~~~~lp~-~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~ 434 (985)
|.++ .|+ .|++.++ +++.+++-. +.-|+.......+ |.. ...|...-. +.+ .|++-
T Consensus 184 K~i~----~g~--GG~i~t~~~~~~~~~~~~~~~g~~~~~~~~~-~~~----------~~~G~n~rm--s~l---~Aaig 241 (384)
T d1b9ha_ 184 KLMT----AGE--GGAVVFPDGETEKYETAFLRHSCGRPRDDRR-YFH----------KIAGSNMRL--NEF---SASVL 241 (384)
T ss_dssp SSSC----SSS--CEEEEECTTCHHHHHHHHHHTBTTCCTTCSS-CCC----------CSCCCBCBC--BHH---HHHHH
T ss_pred cccc----ccc--cchhhhhhHHHHHHHHHHHhcCCCCcccccc-ccc----------ccccccccc--ccc---hhhhh
Confidence 5553 222 3566665 344333210 1112111111111 100 001111101 122 23332
Q ss_pred HHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCC-C-----CcceEEEecCC-----HHHHHHHHHHcCceeeeec
Q 001989 435 AVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGL-P-----FFDTVKVKCAD-----AHAIASAAYKIEMNLRVVD 503 (985)
Q Consensus 435 l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~-~-----~~~~~~~~~~~-----~~~v~~~L~~~GI~~~~~~ 503 (985)
+..+ +-++++.++-.++++++.+.|+++.++.+... . ...-+.+..+. -.++.+.|.++||.++..+
T Consensus 242 ~~qL--~~ld~~~~~R~~~~~~y~~~L~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rd~l~~~L~~~GI~~~~~y 319 (384)
T d1b9ha_ 242 RAQL--ARLDEQIAVRDERWTLLSRLLGAIDGVVPQGGDVRADRNSHYMAMFRIPGLTEERRNALVDRLVEAGLPAFAAF 319 (384)
T ss_dssp HHHH--TTHHHHHHHHHHHHHHHHHHHHTSTTCEECCCCTTCCBCCCSEEEEECTTCCHHHHHHHHHHHHHTTCCEEECC
T ss_pred hhhh--hhcccchhhhhhhhhhhhhhhhcccccccccccccccccccccccceecccccccHHHHHHHHHHCCCCeeeeC
Confidence 2222 35677777778899999999998743655421 1 11234444442 2469999999999653210
Q ss_pred ---------------------------------CCeEEEEeccCCC-HHHHHHHHHHHhC
Q 001989 504 ---------------------------------SNTVTASFDETTT-LEDVDKLFIVFAG 529 (985)
Q Consensus 504 ---------------------------------~~~lris~t~~~t-~edId~li~aL~~ 529 (985)
...+.+-.+..-| ++||++.++.|.+
T Consensus 320 ~plh~~~~~~~~~~~~~~~~~~~~~~Pna~~l~~~~l~LP~~~~Lt~e~ei~~I~~~i~~ 379 (384)
T d1b9ha_ 320 RAIYRTDAFWELGAPDESVDAIARRCPNTDAISSDCVWLHHRVLLAGEPELHATAEIIAD 379 (384)
T ss_dssp CCGGGSHHHHHSSCCSSCHHHHHHTCHHHHHHHHHEEEEEGGGGGSCHHHHHHHHHHHHH
T ss_pred cchhcCHHHHhcCCCcccccccccCCHHHHHHHhCEEEccCCCCCCCHHHHHHHHHHHHH
Confidence 1335565565555 6799999988874
|
| >d1ajsa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pig (Sus scrofa), cytosolic form [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Pig (Sus scrofa), cytosolic form [TaxId: 9823]
Probab=99.29 E-value=6.6e-12 Score=142.21 Aligned_cols=314 Identities=10% Similarity=0.086 Sum_probs=175.4
Q ss_pred CCCCchhhhhhHHHHHHHHHHHHHHHhCC----Ccc-ceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCccc
Q 001989 619 HPFAPADQAQGYQEMFNNLGEWLCTITGF----DSF-SLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTN 693 (985)
Q Consensus 619 ~p~~p~e~~~G~~~~~~e~~~~la~l~G~----~~~-~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~ 693 (985)
|.|.| .+|..++.+.+++++.+..+. +.. .+...+++.+...+..++...... -.++||+|+++++.++.+
T Consensus 68 ~~Y~p---~~G~p~lreaia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~pGd~Vlv~~P~y~~y 143 (412)
T d1ajsa_ 68 HEYLP---ILGLAEFRTCASRLALGDDSPALQEKRVGGVQSLGGTGALRIGAEFLARWYNG-TNNKDTPVYVSSPTWENH 143 (412)
T ss_dssp CCCCC---TTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHSSS-SSCCCSCEEEEESCCTHH
T ss_pred CCCCC---CCCCHHHHHHHHHHHhccCCcccccccceeecccchhhHHHHHHHHHHHHhhh-cCCCCCEEEEeCCcchhh
Confidence 34555 578766665555555433222 111 223333444333333332221111 125889999999988888
Q ss_pred HHHHHHCCcEEEEE-cC-CC-CCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccc--cCHHHHHHHHHHcCCEEEEEc
Q 001989 694 PATAAMCGMKIVSV-GT-DA-KGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYE--EGIDEICKIIHDNGGQVYMDG 767 (985)
Q Consensus 694 ~~~a~~~G~~vv~v-~~-d~-~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~--~di~eI~~la~~~galliVD~ 767 (985)
....+..|++.+.+ +. +. .+..|++.+++.+....++++++++++| |++|.+- ..+++|+++|+++|++++.|.
T Consensus 144 ~~~~~~~G~~~v~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~il~~~P~NPTG~v~s~e~~~~i~~la~~~~~~ii~De 223 (412)
T d1ajsa_ 144 NGVFTTAGFKDIRSYRYWDTEKRGLDLQGFLSDLENAPEFSIFVLHACAHNPTGTDPTPEQWKQIASVMKRRFLFPFFDS 223 (412)
T ss_dssp HHHHHHTTCSCEEEEECEETTTTEECHHHHHHHHHHSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEE
T ss_pred HHHHHHcCCeEEEeecccccccccccHHHHHHHHHhccCCcEEEEecCCCCCcCCCCCHHHHHHHHHHHhhCCEEEEecH
Confidence 88889999875544 33 22 3568999888887655578899999898 6799985 358999999999999999999
Q ss_pred cccccccCCCC-----------CCccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCC---CccccCCCCCCC
Q 001989 768 ANMNAQVGLTS-----------PGYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPS---HPVVSTGGIPAP 833 (985)
Q Consensus 768 a~~~~~~~l~~-----------pg~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~---~~~g~~~~~~~~ 833 (985)
++.. + .+.. +......+++.++.|.+++| |+++|++++.......+.. .....
T Consensus 224 ~Y~~-l-~~~~~~~~~~~~~~~~~~~~~~~~~~s~sk~~~~~----G~R~G~~~~~~~~~~~~~~~~~~~~~~------- 290 (412)
T d1ajsa_ 224 AYQG-F-ASGNLEKDAWAIRYFVSEGFELFCAQSFSKNFGLY----NERVGNLTVVAKEPDSILRVLSQMQKI------- 290 (412)
T ss_dssp SCTT-T-TTSCHHHHTHHHHHHHHTTCCEEEEEECTTTSCCG----GGCEEEEEEECSSHHHHHHHHHHHHHH-------
T ss_pred hhhh-h-hcCCcccchhhhhhhhhhcccccccccccccccCC----CCCccccccchhHHHHHHHHHHHHHHH-------
Confidence 8731 1 1110 01112346667777888654 7899999987654322110 00000
Q ss_pred CCCCCCCCCCCcchhhhHHHHHHHH--HHHHhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCee---ecCCCCceeeEEEE
Q 001989 834 EKSQPLGTIAAAPWGSALILPISYT--YIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPIL---FRGVNGTVAHEFIV 907 (985)
Q Consensus 834 ~~~~~~~~i~s~~~g~~~~~~~a~a--~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~---~~~~~~~~~~~~iv 907 (985)
......+.+ ..++... ...+. .......+-++...++..++++.+.+.|++ +.... +....+ .| .
T Consensus 291 -~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~l~~~L~~~~~~~~~~~i~~~~G-~F---~- 361 (412)
T d1ajsa_ 291 -VRVTWSNPP--AQGARIV-ARTLSDPELFHEWTGNVKTMADRILSMRSELRARLEALKTPGTWNHITDQIG-MF---S- 361 (412)
T ss_dssp -HHTTTSSCC--SHHHHHH-HHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCHHHHHCCS-SE---E-
T ss_pred -hhccccccc--hHHHHHH-HHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCeeeecCCCe-EE---E-
Confidence 000011111 1222111 11110 000111122444555667778888888876 32210 111112 22 1
Q ss_pred EecCccccCCCCHHHHHHHHHHCCCccCCCCCCCCCEEEEeccCCCCHHHHHHHHccCChhHHHHhhc
Q 001989 908 DLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRLK 975 (985)
Q Consensus 908 ~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~~ 975 (985)
+. +.+.+.+.+.+.++||++.. + .||++.- .+.++||+ ++++|+++++++|
T Consensus 362 -~~------~ls~~~v~~L~~e~gV~~vp------g-~Ri~~ag-~~~~~i~~--~a~aI~~av~~~~ 412 (412)
T d1ajsa_ 362 -FT------GLNPKQVEYLINQKHIYLLP------S-GRINMCG-LTTKNLDY--VATSIHEAVTKIQ 412 (412)
T ss_dssp -EC------CCCHHHHHHHHHTTCEECCT------T-SEEEGGG-CCTTTHHH--HHHHHHHHHHHCC
T ss_pred -ec------CCCHHHHHHHHHhCCEEEeC------C-CeEEecc-CCHHHHHH--HHHHHHHHHHhcC
Confidence 11 34555555444667986521 2 2888753 34677999 8899999998875
|
| >d2gb3a1 c.67.1.1 (A:4-392) AAT homologue TM1698 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: AAT homologue TM1698 species: Thermotoga maritima [TaxId: 2336]
Probab=99.29 E-value=9.4e-10 Score=122.97 Aligned_cols=308 Identities=12% Similarity=0.110 Sum_probs=182.3
Q ss_pred cCCCCCCCCCcHHHHHHHHhCCccccccCCChhhHhhhHHHHHHHHHHHHHHhcCC--CCcceeeccchHHHHHHHHHHh
Q 001989 171 IGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGL--PMSNASLLDEGTAAAEAMAMCN 248 (985)
Q Consensus 171 lG~g~y~~~~p~~v~~~i~~~~~~~t~~~pyq~e~sqg~l~~i~e~q~~ia~L~g~--~~~~~sl~~~~ta~~ea~~~a~ 248 (985)
++.|.=++-.|+.+.+++.+...-.+.|+|- +|..+......+.+.+..|. ++.++.+++|++.++..++.++
T Consensus 33 l~~G~p~~~~p~~~~~al~~~~~~~~~Y~~~-----~G~~~LR~aia~~~~~~~g~~~~~~~I~it~G~~~~l~~~~~~l 107 (389)
T d2gb3a1 33 LNIGQPDLKTPEVFFERIYENKPEVVYYSHS-----AGIWELREAFASYYKRRQRVDVKPENVLVTNGGSEAILFSFAVI 107 (389)
T ss_dssp CSSCCCCSCCCTHHHHHHHHTCCSSCCCCCT-----TCCHHHHHHHHHHHHHTSCCCCCGGGEEEESHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHhcCCCCCCCCCC-----cCCHHHHHHHHHHHHHhcCCCcccceEEeccccccccccccccc
Confidence 3666534456777766665543334566543 44444434444455555564 4678999999987777666554
Q ss_pred hhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc---------hhhhc-cCCCEeEEEEEcC-CCCeeec---c
Q 001989 249 NIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL---------KDIDY-KSGDVCGVLVQYP-GTEGEVL---D 314 (985)
Q Consensus 249 ~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~---------~~l~~-l~~~t~~V~v~~p-n~~G~v~---d 314 (985)
. ++|++|+++.-.++.+...++. .|..+..++. +.+.. +.++++++++.+| |.+|.+. +
T Consensus 108 ~---~~gd~V~i~~P~y~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~nP~NPtG~~~s~~~ 180 (389)
T d2gb3a1 108 A---NPGDEILVLEPFYANYNAFAKI----AGVKLIPVTRRMEEGFAIPQNLESFINERTKGIVLSNPCNPTGVVYGKDE 180 (389)
T ss_dssp C---CTTCEEEEEESCCTHHHHHHHH----HTCEEEEEECCGGGTSCCCTTGGGGCCTTEEEEEEESSCTTTCCCCCHHH
T ss_pred c---cCCCeEEEeCCCCccccccccc----cCccccccccccccccchhhhhhhhcccCccEEEeCCCCccccccchHHH
Confidence 2 3889999999999988887654 3556555543 12333 5788999999998 7899875 5
Q ss_pred HHHHHHHHHhCCcEEEEEecCccccCCC-CC-----CcccceEEEecC-ccccccCCCCCCcEEEEEEchhhHhcCCCce
Q 001989 315 YGDFIKNAHANGVKVVMATDLLALTILK-PP-----GELGADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRI 387 (985)
Q Consensus 315 i~~I~~~a~~~galliV~a~~~~lg~l~-~~-----~~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~ 387 (985)
+++|+++|+++|++++.+. ....-... .+ ....-.+++.+. |+++.| |=-+|++....+.+...-
T Consensus 181 ~~~i~~~a~~~~~~iI~De-~y~~~~~~~~~~~~~~~~~~~~~v~~s~sK~~~~~----GlRiG~~~~~~~~i~~~~--- 252 (389)
T d2gb3a1 181 MRYLVEIAERHGLFLIVDE-VYSEIVFRGEFASALSIESDKVVVIDSVSKKFSAC----GARVGCLITRNEELISHA--- 252 (389)
T ss_dssp HHHHHHHHHHTTCEEEEEC-TTTTCBCSSCCCCGGGSCCTTEEEEEESTTTTTCG----GGCCEEEECSCHHHHHHH---
T ss_pred HHHHHhhcccCCEEEEEec-cccccccccccccccccccccccccccccccccCc----ccceeeeeccchhHHHHH---
Confidence 8999999999999999853 32211111 10 112334556665 887643 223477766543222110
Q ss_pred eeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCe
Q 001989 388 VGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTV 467 (985)
Q Consensus 388 vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~ 467 (985)
....+...+++... ..++..+.....+-++++.++..++.+++.+.|+++| +
T Consensus 253 -------------------------~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~-~ 304 (389)
T d2gb3a1 253 -------------------------MKLAQGRLAPPLLE--QIGSVGLLNLDDSFFDFVRETYRERVETVLKKLEEHG-L 304 (389)
T ss_dssp -------------------------HHHHHHSCCCCHHH--HHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHTT-C
T ss_pred -------------------------hhhhhccccccccc--cccccccccccchhcccccccccccchhhhhhhhhhc-c
Confidence 00011122222211 1222222233344567788888899999999999997 4
Q ss_pred EEcCCCCcc-eEEEecCC--HHHHHHHHHHc------Cceeeee---------cCCeEEEEeccCCCHHHHHHHHHHHh
Q 001989 468 EVQGLPFFD-TVKVKCAD--AHAIASAAYKI------EMNLRVV---------DSNTVTASFDETTTLEDVDKLFIVFA 528 (985)
Q Consensus 468 ~~~~~~~~~-~~~~~~~~--~~~v~~~L~~~------GI~~~~~---------~~~~lris~t~~~t~edId~li~aL~ 528 (985)
.....|... -+.++.+. ..+++++|.++ ||.+.+. ..+.+|+|+. .+++++++.++.|.
T Consensus 305 ~~~~~p~~g~~~~~~lp~~~~~~~~~~ll~e~~l~~~~v~v~pg~~f~~~~~~~~~~iRis~~--~~~~~l~~a~~~L~ 381 (389)
T d2gb3a1 305 KRFTKPSGAFYITAELPVEDAEEFARWMLTDFNMDGETTMVAPLRGFYLTPGLGKKEIRIACV--LEKDLLSRAIDVLM 381 (389)
T ss_dssp CCBCCCSBSSEEEEECSSSCHHHHHHHHHHSCCBTTEEEECEEGGGGCSSTTTTSSEEEEECC--SCHHHHHHHHHHHH
T ss_pred ccccCCCceEEEEEeCCCCCHHHHHHHHHHhhhhhhCCEEEEeCcccccCCCCCCCEEEEEEc--CCHHHHHHHHHHHH
Confidence 433222211 23345543 78888888754 3333211 1367999975 57777766666554
|
| >d1svva_ c.67.1.1 (A:) Low-specificity threonine aldolase {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Low-specificity threonine aldolase species: Leishmania major [TaxId: 5664]
Probab=99.28 E-value=4.7e-12 Score=136.01 Aligned_cols=287 Identities=12% Similarity=0.084 Sum_probs=153.2
Q ss_pred HHHHHHHHHHHHhCCCccc-eecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHH--HHHHCCcEEEEEcC
Q 001989 633 MFNNLGEWLCTITGFDSFS-LQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPA--TAAMCGMKIVSVGT 709 (985)
Q Consensus 633 ~~~e~~~~la~l~G~~~~~-~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~--~a~~~G~~vv~v~~ 709 (985)
..+++++.+++++|.+... +++++|++++..++.++. .++++++++...|..+.. .....+.....+..
T Consensus 36 ~~~~lr~~ia~~~g~~~~~v~~tsggtean~~a~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (340)
T d1svva_ 36 HCAKAARLIGELLERPDADVHFISGGTQTNLIACSLAL--------RPWEAVIATQLGHISTHETGAIEATGHKVVTAPC 107 (340)
T ss_dssp HHHHHHHHHHHHHTCTTSEEEEESCHHHHHHHHHHHHC--------CTTEEEEEETTSHHHHSSTTHHHHTTCCEEEECC
T ss_pred HHHHHHHHHHHHhCCCcceEEEcCCHHHHHHHHHHHHh--------hhccccccccccceeeeecccccccceeeeeccc
Confidence 4568999999999998755 445677776644433321 356777777665443321 12233444444433
Q ss_pred CCCCCCCHHHHHHHHHhc----CCCEEEEEEEcCCCccccc--cCHHHHHHHHHHcCCEEEEEccccccccCCCCCC---
Q 001989 710 DAKGNINIEELRKAAEAN----RDNLSTLMVTYPSTHGVYE--EGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPG--- 780 (985)
Q Consensus 710 d~~g~iD~e~L~~~i~~~----~~~t~~Vvv~~pn~~G~i~--~di~eI~~la~~~galliVD~a~~~~~~~l~~pg--- 780 (985)
. ....+.+...++.... .+.+..++++.++..|.+. +++..+.+.|+++|+++++|.++...........
T Consensus 108 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~d~a~~~~~~~~~~~~~~~ 186 (340)
T d1svva_ 108 P-DGKLRVADIESALHENRSEHMVIPKLVYISNTTEVGTQYTKQELEDISASCKEHGLYLFLDGARLASALSSPVNDLTL 186 (340)
T ss_dssp T-TSCCCHHHHHHHHHHSCSTTSCEEEEEEEESSCTTSCCCCHHHHHHHHHHHHHHTCEEEEECTTHHHHHTSTTCCCCH
T ss_pred c-cccccchhHHHHhhhhhcccCCcceeeeecccccccccccHHHhhhhhcccccccceeeeeccceeeeeccccccccc
Confidence 2 2334444444444321 1234455556665545443 2577788999999999999998742222211100
Q ss_pred ---ccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHH
Q 001989 781 ---YIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISY 857 (985)
Q Consensus 781 ---~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~ 857 (985)
....++...+..| +.++++.+................ . ........ . ..+.+
T Consensus 187 ~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~-~-----------~~~~~~~~----~-~~~~a-- 241 (340)
T d1svva_ 187 ADIARLTDMFYIGATK------AGGMFGEALIILNDALKPNARHLI-K-----------QRGALMAK----G-WLLGI-- 241 (340)
T ss_dssp HHHHHHCSEEEEECTT------TTCSSCEEEEECSGGGCTTHHHHH-H-----------HTTCCCTT----T-HHHHH--
T ss_pred ccccccceeeecCCcc------ccccccccccccchhhhhhhhhhc-c-----------cccCccch----h-hHHHH--
Confidence 0113344333333 223344444443322221111000 0 00111111 1 11111
Q ss_pred HHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCC
Q 001989 858 TYIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPT 936 (985)
Q Consensus 858 a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~ 936 (985)
+.+..+...+.....++...++.++.+.|+. ++.+..+. .. +.+.+.++ .+++++|.++++..+.
T Consensus 242 a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~p~--~~--~~v~~~~~----------~~~~~~l~~~~~~~~~ 307 (340)
T d1svva_ 242 QFEVLMKDNLFFELGAHSNKMAAILKAGLEACGIRLAWPS--AS--NQLFPILE----------NTMIAELNNDFDMYTV 307 (340)
T ss_dssp HHHHHTSTTHHHHHHHHHHHHHHHHHHHHHHTTCCBSSCC--SS--SEECBEEE----------HHHHHHHTTTEECEEE
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhhhHHHHhcCCCeeecCC--Cc--eEEEEeCC----------HHHHHHHHHhhhhhcc
Confidence 2333455556666777788888999998887 66654322 21 22223332 3567778887665332
Q ss_pred -CCCCCCCEEEEeccCCCCHHHHHHHHccCChhH
Q 001989 937 -MSWPVPGTLMIEPTESESKSWTGIVMLSSPSEK 969 (985)
Q Consensus 937 -~~~p~~~~lris~t~~~t~eeId~~~~~~~l~~ 969 (985)
......+.+|+|++..+|+||||+ ++++|++
T Consensus 308 ~~~~~~~~~vR~s~~~~~t~edid~--~l~~l~~ 339 (340)
T d1svva_ 308 EPLKDGTCIMRLCTSWATEEKECHR--FVEVLKR 339 (340)
T ss_dssp EEETTTEEEEEEECCTTCCHHHHHH--HHHHHHH
T ss_pred cccCCCCcEEEEECCCCCCHHHHHH--HHHHHhc
Confidence 122224789999999999999999 7677765
|
| >d2r5ea1 c.67.1.1 (A:12-429) Kynurenine--oxoglutarate transaminase I {Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Kynurenine--oxoglutarate transaminase I species: Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]
Probab=99.28 E-value=9.1e-10 Score=124.49 Aligned_cols=327 Identities=14% Similarity=0.125 Sum_probs=192.4
Q ss_pred HHHHHHHHhcCCCccceecCCCCCCCCCcHHHHHHHH---hCCc-cccccCCChhhHhhhHHHHHHHHHHHHHHhcCCC-
Q 001989 153 MIEHMQKLASMNKVYKSFIGMGYYNTHVPPVILRNIM---ENPA-WYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLP- 227 (985)
Q Consensus 153 ~~~~~~~l~~~n~~~~~~lG~g~y~~~~p~~v~~~i~---~~~~-~~t~~~pyq~e~sqg~l~~i~e~q~~ia~L~g~~- 227 (985)
+.+++.+++++-.. -+ ||.|.=++..|+.+.+++. .+++ .++.|+|. +|..+.-....+.+.+..|.+
T Consensus 15 ~~~~~~~~~~~~~~-I~-L~~G~Pd~~~p~~i~eal~~a~~~~~~~~~~Y~~~-----~G~~~lReaiA~~~~~~~g~~~ 87 (418)
T d2r5ea1 15 VWVEYIQLAAQYKP-LN-LGQGFPDYHAPKYALNALAAAANSPDPLANQYTRG-----FGHPRLVQALSKLYSQLVDRTI 87 (418)
T ss_dssp HHHHHHHHHHHHCC-EE-CSSSCCSSCCCHHHHHHHHHHHTCSCGGGGSCCCT-----TCCHHHHHHHHHHHHHHHTSCC
T ss_pred HHHHHHHHhcCCCC-EE-ccCCCCCCCCCHHHHHHHHHHHhCCCccCcCCCCC-----CCCHHHHHHHHHHHHHHhCCCC
Confidence 44555666654222 22 5777533345666654442 2222 34556553 343333222334555555664
Q ss_pred --CcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc-----------------
Q 001989 228 --MSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL----------------- 288 (985)
Q Consensus 228 --~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~----------------- 288 (985)
..++.+++|++.++..++.++. ++||+|++++-.++.+...++. .|.+++.++.
T Consensus 88 ~p~~~I~it~G~~~al~~~~~~l~---~~gd~vlv~~P~y~~~~~~~~~----~g~~~~~v~~~~~~~~~~~~~~~~~~~ 160 (418)
T d2r5ea1 88 NPMTEVLVTVGAYEALYATIQGHV---DEGDEVIIIEPFFDCYEPMVKA----AGGIPRFIPLKPNKTGGTISSADWVLD 160 (418)
T ss_dssp CTTTSEEEESHHHHHHHHHHHHHC---CTTCEEEEEESCCTTHHHHHHH----TTCEEEEEECEESCCSSCEEGGGEECC
T ss_pred CccceEEEcCCCchhhhhhhhhcc---ccccceeccccccchhhHHHHH----cCCeEEEEEecccccccchhhhhhhhh
Confidence 3579999999988777666542 3899999999999999888754 4666666543
Q ss_pred -hhhhc-cCCCEeEEEEEcC-CCCeeec---cHHHHHHHHHhCCcEEEEEecCccccCCC---------CCCcccceEEE
Q 001989 289 -KDIDY-KSGDVCGVLVQYP-GTEGEVL---DYGDFIKNAHANGVKVVMATDLLALTILK---------PPGELGADIVV 353 (985)
Q Consensus 289 -~~l~~-l~~~t~~V~v~~p-n~~G~v~---di~~I~~~a~~~galliV~a~~~~lg~l~---------~~~~~GaDi~v 353 (985)
+++.. ..++++++++.+| |.+|.+. .+++|+++|+++|++++.+. ........ -++..+--+++
T Consensus 161 ~~~~~~~~~~~~~~~~i~~p~NPtG~~~s~e~~~~l~~~a~~~~~~iI~De-~y~~~~~~~~~~~s~~~~~~~~~~~i~~ 239 (418)
T d2r5ea1 161 NNELEALFNEKTKMIIINTPHNPLGKVMDRAELEVVANLCKKWNVLCVSDE-VYEHMVFEPFEHIRICTLPGMWERTITI 239 (418)
T ss_dssp HHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEC-TTTTCBCTTCCCCCGGGSTTTGGGEEEE
T ss_pred HHHHhhhhhccccceecCCcCccccccccHHHHHHHhhhhhcCCeeeeccc-chhhhccCCCccccccccccccceeeee
Confidence 12223 4678999999998 7899876 47789999999999999853 32221111 11223334667
Q ss_pred ecC-ccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHH
Q 001989 354 GSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAA 432 (985)
Q Consensus 354 ~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa 432 (985)
.|. |+++.| |--+|++++.+++++.+- +.+.....+.+...-..++.
T Consensus 240 ~S~SK~~~~p----GlRiG~~~~~~~~i~~~~----------------------------~~~~~~~~~~~~~~q~a~~~ 287 (418)
T d2r5ea1 240 GSAGKTFSLT----GWKIGWAYGPEALLKNLQ----------------------------MVHQNCVYTCATPIQEAIAV 287 (418)
T ss_dssp EEHHHHTTCG----GGCCEEEESCHHHHHHHH----------------------------HHHTTTTCSCCHHHHHHHHH
T ss_pred ecCCccccCC----Ccccccccccchhhhhhh----------------------------hcccccccccccchhhhccc
Confidence 675 888654 335689888777665441 00011111111121111122
Q ss_pred HHHH-H----hCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCC--CCcceEEEe-----------cCC--HHHHHHHH
Q 001989 433 MYAV-Y----HGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGL--PFFDTVKVK-----------CAD--AHAIASAA 492 (985)
Q Consensus 433 ~~l~-~----~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~--~~~~~~~~~-----------~~~--~~~v~~~L 492 (985)
.+.. . ...+-++++.++...+.+++.+.|+++| +++..+ .+|--+.+. ... ..++.+.|
T Consensus 288 ~l~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~g-~~~~~P~gg~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 366 (418)
T d2r5ea1 288 GFETELKRLKSPECYFNSISGELMAKRDYMASFLAEVG-MNPTVPQGGYFMVADWSSLDSKVDLTQETDARKDYRFTKWM 366 (418)
T ss_dssp HHHHHHTTTTSTTSHHHHHHHHHHHHHHHHHHHHHHTT-CEEEECSBSSEEEEECGGGSTTCCGGGCCCSSHHHHHHHHH
T ss_pred cccccccccccchhhHHHHHHHHHHhhhhHHhhHhhcC-CcccCCCceeEEEEEcccccccccchhcccccCHHHHHHHH
Confidence 1111 1 1123356777888888899999999997 776422 222111111 011 56778877
Q ss_pred HH-cCceeeee-----------cCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 493 YK-IEMNLRVV-----------DSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 493 ~~-~GI~~~~~-----------~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
.+ .||.+.+- ..+.+|+|+. .++|+|++.++.|++
T Consensus 367 l~~~gV~v~PG~~F~~~~~~~~g~~~iRis~~--~~~e~l~~a~~rl~~ 413 (418)
T d2r5ea1 367 TKSVGLQGIPPSAFYSEPNKHLGEDFVRYCFF--KKDENLQKAAEILRK 413 (418)
T ss_dssp HHHHSEECBCGGGGSCGGGHHHHTTEEEEECC--SCHHHHHHHHHHHHH
T ss_pred HHHCCEEEeCchhhCCCCCccCCCCEEEEEec--CCHHHHHHHHHHHHH
Confidence 65 59976321 1367999984 578999988888763
|
| >d1yaaa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]
Probab=99.25 E-value=2.4e-11 Score=137.52 Aligned_cols=261 Identities=9% Similarity=0.027 Sum_probs=155.2
Q ss_pred CCCCEEEEcCCCCcccHHHHHHCCcEEEEEcCC--CCCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccc--cCHHHH
Q 001989 678 HHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTD--AKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYE--EGIDEI 752 (985)
Q Consensus 678 ~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~d--~~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~--~di~eI 752 (985)
.++|+|+++++.++.+...+...|++++.+|.. .++..|.+.+++.+...+++++++++++| |++|.+- ..+++|
T Consensus 122 ~~gd~Vlip~P~~~~y~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~P~NPTG~~~s~~~~~~i 201 (412)
T d1yaaa_ 122 FPDKLVYLSKPTWANHMAIFENQGLKTATYPYWANETKSLDLNGFLNAIQKAPEGSIFVLHSCAHNPTGLDPTSEQWVQI 201 (412)
T ss_dssp CTTCCEEEEESCCTTHHHHHHTTTCCEEEEECEETTTTEECHHHHHHHHHHSCTTCEEEEECSSCTTTCCCCCHHHHHHH
T ss_pred CCCCEEecccccCchhHHHHHHcCCceecccccccccccccchhhhcccccCCCceEEEEecCCCCCccccCCHHHHHHH
Confidence 478999999998988888899999999999974 34678899999988766667888899898 5799985 258999
Q ss_pred HHHHHHcCCEEEEEccccccccCCCC--------------CCccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCc
Q 001989 753 CKIIHDNGGQVYMDGANMNAQVGLTS--------------PGYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPF 818 (985)
Q Consensus 753 ~~la~~~galliVD~a~~~~~~~l~~--------------pg~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~ 818 (985)
.++|++++++++.|.++. .+ .+.. ......-+++.|+.|.|++| |.++|++++..+....
T Consensus 202 ~~~a~~~~~~ii~De~Y~-~l-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~----G~RiG~~~~~~~~~~~ 275 (412)
T d1yaaa_ 202 VDAIASKNHIALFDTAYQ-GF-ATGDLDKDAYAVRLGVEKLSTVSPVFVCQSFAKNAGMY----GERVGCFHLALTKQAQ 275 (412)
T ss_dssp HHHHHHTTCEEEEEESCT-TT-SSSCHHHHTHHHHHHHHHTTTTCCEEEEEECTTTSCCG----GGCEEEEEEECCSCTT
T ss_pred HhhhccCCEEEeecceee-ec-ccCCcccchhhhhhhhhccccCCCeEEEEecCCccccC----cCceEEEEEchhhhhh
Confidence 999999999999999873 11 1110 01111236777888988765 8899999988765533
Q ss_pred CCCC---ccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHH--HHHHhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCe
Q 001989 819 LPSH---PVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYT--YIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPI 892 (985)
Q Consensus 819 lp~~---~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a--~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l 892 (985)
+... ...... ........+. +..++... ...+. .+.....+-++...++..++++.+.+.|++ +...
T Consensus 276 ~~~~~~~~~~~~~----~~~~~~~~~~--~~~~q~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~g~~~ 348 (412)
T d1yaaa_ 276 NKTIKPAVTSQLA----KIIRSEVSNP--PAYGAKIV-AKLLETPELTEQWHKDMVTMSSRITKMRHALRDHLVKLGTPG 348 (412)
T ss_dssp HHHHHHHHHHHHH----HHHHTTTSSC--CHHHHHHH-HHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSS
T ss_pred HHHHHHHHHHHHH----HHHHHHhcCC--ChHHHHHH-HHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 2100 000000 0000011111 11222211 10000 000011123445555667778888888876 3221
Q ss_pred --eecCCCCceeeEEEEEecCccccCCCCHHHHHHHH-HHCCCccCCCCCCCCCEEEEeccCCCCHHHHHHHHccCChhH
Q 001989 893 --LFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRL-MDYGFHGPTMSWPVPGTLMIEPTESESKSWTGIVMLSSPSEK 969 (985)
Q Consensus 893 --~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L-~~~Gi~~~~~~~p~~~~lris~t~~~t~eeId~~~~~~~l~~ 969 (985)
.+..+.+..+ + +. +.+.+ ++++| .++||++. ...||++.- .+.+.||+ ++++|++
T Consensus 349 ~~~~~~~~gG~F---~--~~------~ls~e-~~~~L~~e~~V~~~-------~g~Ris~~g-~~~~~i~~--l~~ai~~ 406 (412)
T d1yaaa_ 349 NWDHIVNQCGMF---S--FT------GLTPQ-MVKRLEETHAVYLV-------ASGRASIAG-LNQGNVEY--VAKAIDE 406 (412)
T ss_dssp CCTHHHHCCSSE---E--EC------CCCHH-HHHHHHHHHCEECC-------TTSEEEGGG-CCTTTHHH--HHHHHHH
T ss_pred CCceeCCCceEE---E--ec------CcCHH-HHHHHHHhCCEEEC-------CCCEEEecc-CCHHHHHH--HHHHHHH
Confidence 1111112222 1 11 34544 45666 55688652 124887653 34567888 7777777
Q ss_pred HHHh
Q 001989 970 KLHR 973 (985)
Q Consensus 970 ~~~~ 973 (985)
+++.
T Consensus 407 v~k~ 410 (412)
T d1yaaa_ 407 VVRF 410 (412)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 7653
|
| >d1dfoa_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Escherichia coli [TaxId: 562]
Probab=99.22 E-value=1e-10 Score=128.72 Aligned_cols=270 Identities=13% Similarity=0.083 Sum_probs=172.2
Q ss_pred HHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHH---HHHhhcCCCeEEEE-------
Q 001989 216 FQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDI---CITRADGFDIKVVV------- 285 (985)
Q Consensus 216 ~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~---~~~~a~~~gi~v~~------- 285 (985)
+++...+|+|++.+|+-.++ |+.+..++.+|+. ++||+|+..+..|..-+.. +.. .+..++...
T Consensus 77 a~~ra~~lF~a~~anVqp~S-Gs~AN~av~~All---~pGD~Il~l~l~~GGHlshg~~~~~--~g~~~~~~~y~~d~~~ 150 (416)
T d1dfoa_ 77 AIDRAKELFGADYANVQPHS-GSQANFAVYTALL---EPGDTVLGMNLAHGGHLTHGSPVNF--SGKLYNIVPYGIDATG 150 (416)
T ss_dssp HHHHHHHHHTCSEEECCCSS-HHHHHHHHHHHHC---CTTCEEEEECTTTTCCGGGTCTTSH--HHHHSEEEEECBCSSS
T ss_pred HHHHHHHHhCCCcceeeccc-CccHHHHHHHHhc---CCCCeeeeccccccccccccccccc--cCceEEEEecccCCcc
Confidence 34667889999988886655 4555667777762 4999999888777432211 100 011122222
Q ss_pred -eCchhhhc--cCCCEeEEEEEcCCCCeeeccHHHHHHHHHhCCcEEEEE-ecCcc---ccCCCCCCcccceEEEecC-c
Q 001989 286 -SDLKDIDY--KSGDVCGVLVQYPGTEGEVLDYGDFIKNAHANGVKVVMA-TDLLA---LTILKPPGELGADIVVGSA-Q 357 (985)
Q Consensus 286 -v~~~~l~~--l~~~t~~V~v~~pn~~G~v~di~~I~~~a~~~galliV~-a~~~~---lg~l~~~~~~GaDi~v~s~-k 357 (985)
+|+|++++ ...+.+++++-. +.+....|++++.++|++.|+++++| +|..+ -|+..+|-.+ +||+.++. |
T Consensus 151 ~IDyd~l~~~a~~~kPklIi~G~-S~y~r~~d~~~~reiad~vga~l~~D~aH~~GLIa~g~~~sP~~~-aDvvt~tThK 228 (416)
T d1dfoa_ 151 HIDYADLEKQAKEHKPKMIIGGF-SAYSGVVDWAKMREIADSIGAYLFVDMAHVAGLVAAGVYPNPVPH-AHVVTTTTHK 228 (416)
T ss_dssp SBCHHHHHHHHHHHCCSEEEEEC-SSCCSCCCHHHHHHHHHHTTCEEEEECTTTHHHHHHTSSCCCTTT-SSEEEEESSS
T ss_pred CccHHHHHHHHHHhccceEEecc-cccccccCHHHHHHHHHhcCceEEcchhhhhcceeccccCCcccc-cceeeeehhh
Confidence 34556655 233556777665 44556779999999999999999995 44433 3566778776 69999999 8
Q ss_pred cccccCCCCCCcEEEEEEc---hhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHH
Q 001989 358 RFGVPMGYGGPHAAFLATS---QEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMY 434 (985)
Q Consensus 358 ~lg~P~~~GGP~~G~l~~~---~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~ 434 (985)
+|.+ |..|++.++ +++.+++...+ ..|.+.-+-+..+.+.+.++
T Consensus 229 tlrG------PrggiI~~~~~~~~~~~~i~~av--------------------------fPg~qggp~~~~iaa~Aval- 275 (416)
T d1dfoa_ 229 TLAG------PRGGLILAKGGSEELYKKLNSAV--------------------------FPGGQGGPLMHVIAGKAVAL- 275 (416)
T ss_dssp TTCC------CSCEEEEESSCCHHHHHHHHHHH--------------------------TTTTCSSCCHHHHHHHHHHH-
T ss_pred cccC------CCceEEEeccchHhHHHHHHhhh--------------------------CcccccCccHHHHHHHHHHH-
Confidence 8865 555888886 34433320000 00110001113344443333
Q ss_pred HHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcC-CCCcceEEEecC--C--HHHHHHHHHHcCceeee--------
Q 001989 435 AVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQG-LPFFDTVKVKCA--D--AHAIASAAYKIEMNLRV-------- 501 (985)
Q Consensus 435 l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~-~~~~~~~~~~~~--~--~~~v~~~L~~~GI~~~~-------- 501 (985)
........++-+++..++|+.|++.|.+.| ++++. ...-+.+.++.. + +.++.+.|.+.||.+..
T Consensus 276 -~Ea~~~~fk~Y~~qvv~NA~~La~~L~~~G-~~iv~ggTdnHlvlvdl~~~~~~G~~a~~~Le~~gI~~Nkn~iP~d~~ 353 (416)
T d1dfoa_ 276 -KEAMEPEFKTYQQQVAKNAKAMVEVFLERG-YKVVSGGTDNHLFLVDLVDKNLTGKEADAALGRANITVNKNSVPNDPK 353 (416)
T ss_dssp -HHTTSHHHHHHHHHHHHHHHHHHHHHHHTT-CEEGGGSCSSSEEEEECGGGTCCHHHHHHHHHHTTEECEECCCTTCSS
T ss_pred -HHHcCHHHHHHHHHHHHHHHHHHHHHHhCC-cccccCCCCCceeEEEecccCCCHHHHHHHHHHcCeEEeCCcCCCCCC
Confidence 333445678999999999999999999998 99984 344455666653 2 78888889999997632
Q ss_pred --ecCCeEEEEeccCCC----HHHHHHHHHHHh
Q 001989 502 --VDSNTVTASFDETTT----LEDVDKLFIVFA 528 (985)
Q Consensus 502 --~~~~~lris~t~~~t----~edId~li~aL~ 528 (985)
..++.||+...+.+| ++|++++.+.+.
T Consensus 354 ~~~~~SGiRiGT~a~TtrG~~e~d~~~iA~~I~ 386 (416)
T d1dfoa_ 354 SPFVTSGIRVGTPAITRRGFKEAEAKELAGWMC 386 (416)
T ss_dssp CTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHH
T ss_pred CCCCCCceEeCCHHHHhCCCCHHHHHHHHHHHH
Confidence 124789999877554 577777655554
|
| >d1u08a_ c.67.1.1 (A:) Putative methionine aminotransferase YdbL {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative methionine aminotransferase YdbL species: Escherichia coli [TaxId: 562]
Probab=99.21 E-value=2.3e-09 Score=119.64 Aligned_cols=323 Identities=11% Similarity=0.065 Sum_probs=194.9
Q ss_pred HHHHHHHHHhcCCCccceecCCCCCCCCCcHHHHHHH---HhCCccccccCCChhhHhhhHHHHHHHHHHHHHHhcCCCC
Q 001989 152 QMIEHMQKLASMNKVYKSFIGMGYYNTHVPPVILRNI---MENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPM 228 (985)
Q Consensus 152 e~~~~~~~l~~~n~~~~~~lG~g~y~~~~p~~v~~~i---~~~~~~~t~~~pyq~e~sqg~l~~i~e~q~~ia~L~g~~~ 228 (985)
-+.+++.++|++.... + |+.|.=+...|+.+.+++ +.+ + .+.|+|. +|..+.-....+.+.+..|.+.
T Consensus 14 ~~~~~~~~~a~~~~~i-~-l~~G~Pd~~~p~~i~~a~~~~~~~-~-~~~Y~~~-----~G~~~LReaia~~~~~~~g~~~ 84 (382)
T d1u08a_ 14 TIFTQMSALAQQHQAI-N-LSQGFPDFDGPRYLQERLAHHVAQ-G-ANQYAPM-----TGVQALREAIAQKTERLYGYQP 84 (382)
T ss_dssp CHHHHHHHHHHHTTCE-E-CCCSSCSSCCCHHHHHHHHHHHHT-T-CCSCCCT-----TCCHHHHHHHHHHHHHHHSCCC
T ss_pred cHHHHHHHHhccCCCE-E-ccCCCCCCCCCHHHHHHHHHHHhc-C-CCCCCCC-----cCCHHHHHHHHHHHHHHhCCCC
Confidence 4667788888776433 2 366653344666664333 232 2 3556654 3433322222334444557653
Q ss_pred --c-ceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc---------hhhhc-cC
Q 001989 229 --S-NASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL---------KDIDY-KS 295 (985)
Q Consensus 229 --~-~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~---------~~l~~-l~ 295 (985)
. ++.++.|++.++..+++++. ++||.|++++-.++.+...+.. .|..+..++. +++++ ..
T Consensus 85 ~~~~~I~vt~G~~~al~~~~~~l~---~~gd~vl~~~p~y~~~~~~~~~----~g~~~~~~~~~~~~~~~d~~~l~~~~~ 157 (382)
T d1u08a_ 85 DADSDITVTAGATEALYAAITALV---RNGDEVICFDPSYDSYAPAIAL----SGGIVKRMALQPPHFRVDWQEFAALLS 157 (382)
T ss_dssp CTTTTEEEESSHHHHHHHHHHHHC---CTTCEEEEEESCCTTHHHHHHH----TTCEEEEEECCTTTCCCCHHHHHHHCC
T ss_pred CCCceEEeccchHHHHHHHHhhcc---cccceEEEecccccchhhhhhh----ccccceecccccccccCCHHHHhhhhc
Confidence 3 58888999988877776653 4899999999888888777653 4555544422 34555 67
Q ss_pred CCEeEEEEEcC-CCCeeec---cHHHHHHHHHhCCcEEEEEecCccccCCC---CC--Cc----ccceEEEecC-ccccc
Q 001989 296 GDVCGVLVQYP-GTEGEVL---DYGDFIKNAHANGVKVVMATDLLALTILK---PP--GE----LGADIVVGSA-QRFGV 361 (985)
Q Consensus 296 ~~t~~V~v~~p-n~~G~v~---di~~I~~~a~~~galliV~a~~~~lg~l~---~~--~~----~GaDi~v~s~-k~lg~ 361 (985)
++++++++.+| |.+|.+. ++++|++++.+++.+++.+. ....-... .. .. ..--|++.+. |+++.
T Consensus 158 ~~~~~i~l~~P~NPtG~v~~~~~~~~l~~~~~~~~~~ii~d~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~ 236 (382)
T d1u08a_ 158 ERTRLVILNTPHNPSATVWQQADFAALWQAIAGHEIFVISDE-VYEHINFSQQGHASVLAHPQLRERAVAVSSFGKTYHM 236 (382)
T ss_dssp TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHTTSCCEEEEEC-TTTTCBCCSSCCCCGGGSHHHHTTEEEEEEHHHHTTC
T ss_pred cCccEEEECCCCcccccccccccchhhhhhhccccceeeeec-chhhccccccccccccccccccCcEEEEeeccccccC
Confidence 89999999998 6899886 46777888888888887743 22211111 11 11 1112666665 88865
Q ss_pred cCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcc
Q 001989 362 PMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPE 441 (985)
Q Consensus 362 P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~ 441 (985)
| |=-+|++.+.+++++.+. +.+..++.|++...-..++.+ ...+.+
T Consensus 237 p----G~RiG~~v~~~~~~~~~~----------------------------~~~~~~~~~~~~~~q~a~~~~--l~~~~~ 282 (382)
T d1u08a_ 237 T----GWKVGYCVAPAPISAEIR----------------------------KVHQYLTFSVNTPAQLALADM--LRAEPE 282 (382)
T ss_dssp G----GGCCEEEECCHHHHHHHH----------------------------HHHHHHTSSCCHHHHHHHHHH--HHHCTH
T ss_pred C----cccchhhhccchhHHHHH----------------------------hhhcccccccccccccccccc--cccchH
Confidence 4 234688888777665441 011223344333332222222 233456
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCCCcce-EEEecC---C--HHHHHHHHH-HcCceeee---e-----cCCe
Q 001989 442 GLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDT-VKVKCA---D--AHAIASAAY-KIEMNLRV---V-----DSNT 506 (985)
Q Consensus 442 Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~~~~~-~~~~~~---~--~~~v~~~L~-~~GI~~~~---~-----~~~~ 506 (985)
-++++.++..++.+.+.+.+...| +++..+ ...- +-++++ . ..++.++|. ++||.+.+ . ..+.
T Consensus 283 ~~~~~~~~~~~~~~~l~~~~~~~g-~~~~~p-~gg~~~~~~~~~~~~~d~~e~~~~ll~e~gV~v~PG~~F~~~~~~~~~ 360 (382)
T d1u08a_ 283 HYLALPDFYRQKRDILVNALNESR-LEILPC-EGTYFLLVDYSAVSTLDDVEFCQWLTQEHGVAAIPLSVFCADPFPHKL 360 (382)
T ss_dssp HHHTHHHHHHHHHHHHHHHTTSSS-CEECCC-CBSSEEEEECTTTCCSCHHHHHHHHHHHSCEECEEGGGGCSSCCCSCE
T ss_pred HHHHHHHHHHhhhhhhhhhhccCC-cEEecC-CceEEEEEecCCCCCCCHHHHHHHHHHHCCEEEEcchhhCCCCCCCCE
Confidence 677788888888899999998877 877532 1111 223443 1 677888775 67997632 1 1357
Q ss_pred EEEEeccCCCHHHHHHHHHHHhC
Q 001989 507 VTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 507 lris~t~~~t~edId~li~aL~~ 529 (985)
+|+|++ .++|+|+..++.|++
T Consensus 361 ~Ris~~--~~~e~l~~al~RL~~ 381 (382)
T d1u08a_ 361 IRLCFA--KKESTLLAAAERLRQ 381 (382)
T ss_dssp EEEECC--SCHHHHHHHHHHHTT
T ss_pred EEEEEe--CCHHHHHHHHHHHhC
Confidence 999985 578899988888764
|
| >d1wsta1 c.67.1.1 (A:13-415) Multiple substrate aminotransferase, MSAT {Thermococcus profundus [TaxId: 49899]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Multiple substrate aminotransferase, MSAT species: Thermococcus profundus [TaxId: 49899]
Probab=99.21 E-value=8.6e-10 Score=123.88 Aligned_cols=273 Identities=13% Similarity=0.055 Sum_probs=164.9
Q ss_pred HHHHHHHh----cC--CCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCch
Q 001989 216 FQTMIADL----TG--LPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDLK 289 (985)
Q Consensus 216 ~q~~ia~L----~g--~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~~ 289 (985)
+++.+|++ .| .++.++.+++|++.++..+..++. ++||+|++++-.|+.+...+. ..|.+++.++.+
T Consensus 76 lR~aia~~l~~~~g~~~~~~~I~it~G~~~al~~~~~~l~---~~gd~v~~~~P~y~~~~~~~~----~~g~~~~~v~~~ 148 (403)
T d1wsta1 76 LRLALARWMEKRYDIPMSKVEIMTVAGSQQALDLIGRVFL---NPGDPIVVEAPTYLAAIQAFK----YYDPEFISIPLD 148 (403)
T ss_dssp HHHHHHHHHHHHHCCCCTTCEEEEESSHHHHHHHHHHHHC---CTTCEEEEEESCCHHHHHHHH----TTCCEEEEEEEE
T ss_pred HHHHHHHHHHHHhCCCCChHHeeecccchHHHHHHHHHHh---hcCCccccCCCcchhhhHHHh----hccccceeEeec
Confidence 44455555 34 456789999999988877666542 389999999999999888874 457777776542
Q ss_pred h-----------hhc----cCCCEeEEEEEcC-CCCeeec---cHHHHHHHHHhCCcEEEEEecCccc---cCCC----C
Q 001989 290 D-----------IDY----KSGDVCGVLVQYP-GTEGEVL---DYGDFIKNAHANGVKVVMATDLLAL---TILK----P 343 (985)
Q Consensus 290 ~-----------l~~----l~~~t~~V~v~~p-n~~G~v~---di~~I~~~a~~~galliV~a~~~~l---g~l~----~ 343 (985)
+ .+. ..+.+.++++.+| |++|.+. ++++|+++|++++++++.|.-...+ +... .
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~NPtG~~~s~~~l~~i~~~a~~~~~~li~De~y~~l~~~~~~~~~~~~ 228 (403)
T d1wsta1 149 DKGMRVDLLEEKLEELRKQGKRVKIVYTVSTFQNPAGVTMSVDRRKKLLELANEYDFLIVEDGPYSELRYSGEPTPPIKH 228 (403)
T ss_dssp TTEECHHHHHHHHHHHHHTTCCCCEEEECCSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCCGGG
T ss_pred ccCCccccccccchhhhhccccccccccccccCCCCCccCCHHHHHHHHHHHHhcCceeccccchhheecCCCCCCcccc
Confidence 1 111 2344555666667 7899875 5778999999999999995311111 1111 1
Q ss_pred CCcccceEEEecC-ccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccc
Q 001989 344 PGELGADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICT 422 (985)
Q Consensus 344 ~~~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t 422 (985)
..+.+-.++++|. |.++ | | -.+|++..++++++.+... ......|.
T Consensus 229 ~~~~~~~i~~~S~SK~~~-~-G---~RiG~~i~~~~~i~~~~~~----------------------------~~~~~~~~ 275 (403)
T d1wsta1 229 FDDYGRVIYLGTFSKILA-P-G---FRIGWVAAHPHLIRKMEIA----------------------------KQSIDLCT 275 (403)
T ss_dssp GCSSSCEEEEEESTTTTC-G-G---GCCEEEEECHHHHHHHHHH----------------------------HHHHHSSC
T ss_pred cCCCCcEEEEccccceec-C-c---ccccccccchHHHHHHHHH----------------------------Hhhhcccc
Confidence 1345667888887 7663 4 2 2468999888777644100 00011122
Q ss_pred hhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcC--CCeEEcCCCCcceEEEecCC---HHHHHHHHHHcCc
Q 001989 423 AQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKL--GTVEVQGLPFFDTVKVKCAD---AHAIASAAYKIEM 497 (985)
Q Consensus 423 ~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~--g~~~~~~~~~~~~~~~~~~~---~~~v~~~L~~~GI 497 (985)
+.......+++.......+.++++.+...++.+.+.+.|.+. .++....+....-+.+..++ ...+.+.|.++||
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~p~gg~~~~~~~~~~~~~~~~~~~l~~~gV 355 (403)
T d1wsta1 276 NTFGQAIAWKYVENGYLDEHIPKIIEFYKPRRDAMLEALEEYMPEGVEWTKPEGGMFVRVTLPEGIDTKLMMERAVAKGV 355 (403)
T ss_dssp CHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEECCCSBSSEEEEECCTTCCTTTTHHHHHHTTE
T ss_pred ccchhhhHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHhhccCCeEEeCCCceeEEEEECCCCCCHHHHHHHHHHCCE
Confidence 222222222221112222345666777777777777777764 12554322111123345553 6778889999999
Q ss_pred eeeee--------cCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 498 NLRVV--------DSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 498 ~~~~~--------~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
.+.+. .++.+|++++. .++++++..++.|++
T Consensus 356 ~v~pg~~f~~~~~~~~~iRi~~~~-~~~~~l~~al~rl~~ 394 (403)
T d1wsta1 356 AYVPGEAFFVHRDKKNTMRLNFTY-VPEETIREGVRRLAE 394 (403)
T ss_dssp ECEEGGGGSTTCCCCSEEEEECSS-SCHHHHHHHHHHHHH
T ss_pred EEEechhhcCCCCCCCEEEEEecC-CCHHHHHHHHHHHHH
Confidence 87431 14789999864 468888877776653
|
| >d1o4sa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Thermotoga maritima [TaxId: 2336]
Probab=99.21 E-value=4.1e-09 Score=116.99 Aligned_cols=323 Identities=14% Similarity=0.093 Sum_probs=189.3
Q ss_pred HHHHHHHHHHhcCCCccceecCCCCCCCCCcHHHHHHHHhC--CccccccCCChhhHhhhHHHHHHHHHHHHHHhcC--C
Q 001989 151 SQMIEHMQKLASMNKVYKSFIGMGYYNTHVPPVILRNIMEN--PAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTG--L 226 (985)
Q Consensus 151 ~e~~~~~~~l~~~n~~~~~~lG~g~y~~~~p~~v~~~i~~~--~~~~t~~~pyq~e~sqg~l~~i~e~q~~ia~L~g--~ 226 (985)
.++.+..+++-++++..-+ ++.|.=+...|+.+.+++.+. .+ .+.|+|-+ |..+........+....| .
T Consensus 14 ~~~~~~a~~~~~~G~~vI~-l~~G~p~~~~p~~i~~~~~~~~~~~-~~~Y~~~~-----G~~~lR~aia~~~~~~~~~~~ 86 (375)
T d1o4sa_ 14 MELDAKAKALIKKGEDVIN-LTAGEPDFPTPEPVVEEAVRFLQKG-EVKYTDPR-----GIYELREGIAKRIGERYKKDI 86 (375)
T ss_dssp HHHHHHHHHHHHTTCCCEE-CCCSSCSSCCCHHHHHHHHHHHTTC-CCCCCCTT-----CCHHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHCCCCeEE-CCCcCCCCCCCHHHHHHHHHHHhcC-CcCCCCCc-----CCHHHHHHHHhhhhhcccccc
Confidence 3455555555555554333 455543344677766555421 22 34565533 333322222233333344 4
Q ss_pred CCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc----------hhhhc-cC
Q 001989 227 PMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL----------KDIDY-KS 295 (985)
Q Consensus 227 ~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~----------~~l~~-l~ 295 (985)
++.++.++.|++.++..++.++. ++||+|+++.-.++.+...... .+.....+++ +.++. ..
T Consensus 87 ~~~~i~~t~G~~~al~~~~~~l~---~~gd~vlv~~P~y~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (375)
T d1o4sa_ 87 SPDQVVVTNGAKQALFNAFMALL---DPGDEVIVFSPVWVSYIPQIIL----AGGTVNVVETFMSKNFQPSLEEVEGLLV 159 (375)
T ss_dssp CGGGEEEESHHHHHHHHHHHHHC---CTTCEEEEEESCCTTHHHHHHH----TTCEEEEEECCGGGTTCCCHHHHHHTCC
T ss_pred ccccccccCcHHHHHHHHHHHHh---CCCCEEEEccCccccchhhhhc----cccccccccccccccccchhHHHHHhhc
Confidence 56789999999987776666552 3899999999999888777653 3555555432 12233 56
Q ss_pred CCEeEEEEEcC-CCCeeec---cHHHHHHHHHhCCcEEEEEecCccccCCC--------CCCcccceEEEecC-cccccc
Q 001989 296 GDVCGVLVQYP-GTEGEVL---DYGDFIKNAHANGVKVVMATDLLALTILK--------PPGELGADIVVGSA-QRFGVP 362 (985)
Q Consensus 296 ~~t~~V~v~~p-n~~G~v~---di~~I~~~a~~~galliV~a~~~~lg~l~--------~~~~~GaDi~v~s~-k~lg~P 362 (985)
++++++++.+| |++|.+. .+++|+++|++++++++.| +........ .++..+-=|+++|. |.|+.|
T Consensus 160 ~~~~~~~l~nP~NPTG~~~s~~~~~~i~~~a~~~~~~ii~D-e~y~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~l~ 238 (375)
T d1o4sa_ 160 GKTKAVLINSPNNPTGVVYRREFLEGLVRLAKKRNFYIISD-EVYDSLVYTDEFTSILDVSEGFDRIVYINGFSKSHSMT 238 (375)
T ss_dssp TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEE-CTTTTSBCSSCCCCHHHHCSSSTTEEEEEESTTTTTCG
T ss_pred cCccEEEEeCCCCCccCCCCHHHHHHHHHhHHHcCCceehH-hhhccccccccccccccccCCCCCEEEEeechhhccCC
Confidence 78999999999 8899875 5788999999999999885 333321111 01234445677776 877643
Q ss_pred CCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcch
Q 001989 363 MGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEG 442 (985)
Q Consensus 363 ~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~G 442 (985)
|--+|+++..++.++.+-. .+...+.+.+ ..... .+. .. ...-
T Consensus 239 ----G~R~G~~~~~~~~~~~~~~--------------------------~~~~~~~~~~--~~~~~--~~~--~~-~~~~ 281 (375)
T d1o4sa_ 239 ----GWRVGYLISSEKVATAVSK--------------------------IQSHTTSCIN--TVAQY--AAL--KA-LEVD 281 (375)
T ss_dssp ----GGCCEEEECCHHHHHHHHH--------------------------HHHHHTCSCC--HHHHH--HHH--HH-TTCC
T ss_pred ----ccccccccccccchhhhhh--------------------------hhcccccccc--ccchh--hhh--hh-cccc
Confidence 3345888887766543300 0001111111 11111 111 11 2233
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCeEEcCCCCcceEEEecCC-HHHHHHHHH-HcCceeeee----cCCeEEEEeccCCC
Q 001989 443 LKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDTVKVKCAD-AHAIASAAY-KIEMNLRVV----DSNTVTASFDETTT 516 (985)
Q Consensus 443 l~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~-~~~v~~~L~-~~GI~~~~~----~~~~lris~t~~~t 516 (985)
.....+...++.+++.+.|++.| +++..+....-+.++.++ ..++..+|. ++||.+.+- .++.+|+++. ++
T Consensus 282 ~~~~~~~~~~r~~~~~~~l~~~g-~~~~~p~gg~f~~~~~~~~~~~~~~~ll~~~gV~v~pG~~F~~~g~iRis~~--~~ 358 (375)
T d1o4sa_ 282 NSYMVQTFKERKNFVVERLKKMG-VKFVEPEGAFYLFFKVRGDDVKFCERLLEEKKVALVPGSAFLKPGFVRLSFA--TS 358 (375)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTT-CCCCCCSBSSEEEEECSSCHHHHHHHHHHHHCEECEEGGGGTCTTEEEEECC--SC
T ss_pred hhhhHHHHHHHHHHHHHHHHhcC-ceEecCCccEEEEEECCCCHHHHHHHHHHhCCEEEEEccccCCCCeEEEEEc--CC
Confidence 45566667777888999999987 776532111113455665 556666654 679987542 2688999986 57
Q ss_pred HHHHHHHHHHHh
Q 001989 517 LEDVDKLFIVFA 528 (985)
Q Consensus 517 ~edId~li~aL~ 528 (985)
+|+|++.++.|+
T Consensus 359 ~e~l~~al~rl~ 370 (375)
T d1o4sa_ 359 IERLTEALDRIE 370 (375)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 888888777775
|
| >d1bw0a_ c.67.1.1 (A:) Tyrosine aminotransferase (TAT) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Tyrosine aminotransferase (TAT) species: Trypanosoma cruzi [TaxId: 5693]
Probab=99.20 E-value=2.1e-09 Score=121.06 Aligned_cols=265 Identities=10% Similarity=0.094 Sum_probs=158.4
Q ss_pred CCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc----------hhhhc-c
Q 001989 226 LPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL----------KDIDY-K 294 (985)
Q Consensus 226 ~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~----------~~l~~-l 294 (985)
.++.++.+++|++.++..++.++. ++||+|++++-.++.+...++. .|++++.++. +++++ .
T Consensus 99 ~~~~~I~it~G~~~al~~~~~~l~---~~Gd~Vlv~~P~y~~~~~~~~~----~G~~~~~v~~~~~~~~~~~~~~l~~~~ 171 (412)
T d1bw0a_ 99 IVKDNVVLCSGGSHGILMAITAIC---DAGDYALVPQPGFPHYETVCKA----YGIGMHFYNCRPENDWEADLDEIRRLK 171 (412)
T ss_dssp CCGGGEEEESHHHHHHHHHHHHHC---CTTCEEEEEESCCTHHHHHHHH----TTCEEEEEEEEGGGTTEECHHHHHHHC
T ss_pred CCCCeEEEecccccchhhhhhhhh---ccccceeeeeccchhhhhhhhc----cCccccccccccccccchhhHHHHhhh
Confidence 566789999999988777666552 3899999999999988877653 5888887754 23445 6
Q ss_pred CCCEeEEEEEcC-CCCeeec---cHHHHHHHHHhCCcEEEEEecCcc-c---cCCC-----CCCcc--cc-eEEEecC-c
Q 001989 295 SGDVCGVLVQYP-GTEGEVL---DYGDFIKNAHANGVKVVMATDLLA-L---TILK-----PPGEL--GA-DIVVGSA-Q 357 (985)
Q Consensus 295 ~~~t~~V~v~~p-n~~G~v~---di~~I~~~a~~~galliV~a~~~~-l---g~l~-----~~~~~--Ga-Di~v~s~-k 357 (985)
.++++++++.+| |.+|.+. ++++|+++|+++++++++|. ..+ + +... ....+ .. =+++++. |
T Consensus 172 ~~~~~~~~l~np~NPtG~~~~~~~~~~i~~~~~~~~~~vi~De-~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~SK 250 (412)
T d1bw0a_ 172 DDKTKLLIVTNPSNPCGSNFSRKHVEDIVRLAEELRLPLFSDE-IYAGMVFKGKDPNATFTSVADFETTVPRVILGGTAK 250 (412)
T ss_dssp CTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEEC-TTTTCBCCSSCTTCCCCCTTSSCCSCCEEEEEESTT
T ss_pred hccccccccccccccccccchhhhccccccccccCCeeeechh-hHHHhccCCCCCccccccccccccccccccccccCc
Confidence 788999999998 7899875 68899999999999998853 221 1 1000 01111 11 1344454 8
Q ss_pred cccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHHHH
Q 001989 358 RFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVY 437 (985)
Q Consensus 358 ~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~ 437 (985)
+++.| |--+|++.+.+...... . . + .... +.....|++.......++.++..
T Consensus 251 ~~~~~----G~RvG~~~~~~~~~~~~--------------~-~---~---~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 302 (412)
T d1bw0a_ 251 NLVVP----GWRLGWLLYVDPHGNGP--------------S-F---L---EGLK---RVGMLVCGPCTVVQAALGEALLN 302 (412)
T ss_dssp TTSCG----GGCCEEEEEECTTCSCH--------------H-H---H---HHHH---HHHHHHTCSCHHHHHHHHHHHHS
T ss_pred cCccC----CCCcccccccchhhcch--------------h-h---h---hhhc---cccccccCCchhhhhhccccccc
Confidence 88643 34568877654321100 0 0 0 0000 00011111122212222222222
Q ss_pred hCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCC--CCcceEEEec---C---CHHHHHHHHHH-cCceeeee----cC
Q 001989 438 HGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGL--PFFDTVKVKC---A---DAHAIASAAYK-IEMNLRVV----DS 504 (985)
Q Consensus 438 ~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~--~~~~~~~~~~---~---~~~~v~~~L~~-~GI~~~~~----~~ 504 (985)
...+-++++.++..++.+++.+.|.+..|++...+ .++-=+.+.. . +..++.++|.+ +||.+.+- .+
T Consensus 303 ~~~~~~~~~~~~~~~~r~~~~~~l~~~~g~~~~~p~gg~~l~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~PG~~Fg~~ 382 (412)
T d1bw0a_ 303 TPQEHLDQIVAKIEESAMYLYNHIGECIGLAPTMPRGAMYLMSRIDLEKYRDIKTDVEFFEKLLEEENVQVLPGTIFHAP 382 (412)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHTTSTTEEECCCCBTTEEEEEECGGGBSSCCSHHHHHHHHHHHHCEECEEGGGGTCT
T ss_pred ccccccccccchhHHHHHHHHHHHHHhcCceecCCCCceEEEEeCChhhcCCCCCHHHHHHHHHHhCCEEEEeccccCCC
Confidence 33445677888888899999999988633876532 1221111221 1 26778888765 59977432 25
Q ss_pred CeEEEEeccCCCHHHHHHHHHHHh
Q 001989 505 NTVTASFDETTTLEDVDKLFIVFA 528 (985)
Q Consensus 505 ~~lris~t~~~t~edId~li~aL~ 528 (985)
+.+|+|+. .+++++++.++.|+
T Consensus 383 g~iRis~~--~~~e~l~eal~Rl~ 404 (412)
T d1bw0a_ 383 GFTRLTTT--RPVEVYREAVERIK 404 (412)
T ss_dssp TEEEEECC--SCHHHHHHHHHHHH
T ss_pred CeEEEEEc--CCHHHHHHHHHHHH
Confidence 78999985 46777766665554
|
| >d1o69a_ c.67.1.4 (A:) Aminotransferase homolog WlaK (PglE, Cj1121c) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Aminotransferase homolog WlaK (PglE, Cj1121c) species: Campylobacter jejuni [TaxId: 197]
Probab=99.20 E-value=5.6e-10 Score=124.24 Aligned_cols=289 Identities=11% Similarity=0.072 Sum_probs=181.5
Q ss_pred HHHhCCccccccCCChhhHhhhHHHHHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCCh
Q 001989 187 NIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHP 266 (985)
Q Consensus 187 ~i~~~~~~~t~~~pyq~e~sqg~l~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~ 266 (985)
.++.. +|+|..+|+ +.++|+.+|+++|.+. +..+++||+|...++.++.+. +||+|++|...|+
T Consensus 9 ~~l~~-~~~~~~G~~-----------~~~fE~~~~~~~~~~~--~~~~~SgT~Al~lal~~l~~~--~gdeVi~p~~t~~ 72 (374)
T d1o69a_ 9 EVFKS-NYIAPLGEF-----------VNRFEQSVKDYSKSEN--ALALNSATAALHLALRVAGVK--QDDIVLASSFTFI 72 (374)
T ss_dssp HHHHH-TTTSCTTHH-----------HHHHHHHHHHHHCCSE--EEEESCHHHHHHHHHHHTTCC--TTCEEEEESSSCG
T ss_pred HHHhc-CCcCCCCHH-----------HHHHHHHHHHHHCcCe--EEEeCCHHHHHHHHHHHcCCC--CcCEEEeCCcchH
Confidence 44543 477755543 5568899999999875 788899999999888887654 8999999999999
Q ss_pred hHHHHHHHhhcCCCeEEEEeCchh-----------hhc-cCCCEeEEEEEcCCCCeeeccHHHHHHHHHhCCcEEEEEec
Q 001989 267 QTIDICITRADGFDIKVVVSDLKD-----------IDY-KSGDVCGVLVQYPGTEGEVLDYGDFIKNAHANGVKVVMATD 334 (985)
Q Consensus 267 s~~~~~~~~a~~~gi~v~~v~~~~-----------l~~-l~~~t~~V~v~~pn~~G~v~di~~I~~~a~~~galliV~a~ 334 (985)
+...++.. .|.+++.+|+++ ++. ++++|++|++++ .+|...|+++|.++|+++|++++-|+
T Consensus 73 a~~~~~~~----~g~~pv~~Di~~~~~~~~~~~~~~~~~~~~~~~aii~~~--~~G~~~d~~~i~~~~~~~~i~vIED~- 145 (374)
T d1o69a_ 73 ASVAPICY----LKAKPVFIDCDETYNIDVDLLKLAIKECEKKPKALILTH--LYGNAAKMDEIVEICKENDIVLIEDA- 145 (374)
T ss_dssp GGTHHHHH----TTCEEEEECBCTTSSBCHHHHHHHHHHCSSCCCEEEEEC--GGGCCCCHHHHHHHHHHTTCEEEEEC-
T ss_pred hhHHHHhh----ccceeEecccccccccccccccccchhcccccccccccc--cccchhhhHHHHHHhhccCcchhhhh-
Confidence 99988753 588999988641 112 567899999887 78999999999999999999999854
Q ss_pred CccccCCC---CCCcccceEEEecC---ccccccCCCCCCcEEEEEEc-hhhHhcCCC-ceeeeeecCCCCcceeeeccc
Q 001989 335 LLALTILK---PPGELGADIVVGSA---QRFGVPMGYGGPHAAFLATS-QEYKRMMPG-RIVGVSIDSSGKPALRVAMQT 406 (985)
Q Consensus 335 ~~~lg~l~---~~~~~GaDi~v~s~---k~lg~P~~~GGP~~G~l~~~-~~~~~~lp~-~~vG~t~d~~g~~~~~l~l~t 406 (985)
.+++|.-. ..|.+| |+.+.|. |.++ +|| .|++.++ +++.+++.. +..|.... ...
T Consensus 146 a~a~g~~~~~~~~G~~g-d~~~fSf~~~K~l~----tge--GG~i~tnn~~~~~~~~~~~~~g~~~~--~~~-------- 208 (374)
T d1o69a_ 146 AEALGSFYKNKALGTFG-EFGVYSYNGNKIIT----TSG--GGMLIGKNKEKIEKARFYSTQARENC--LHY-------- 208 (374)
T ss_dssp TTCTTCEETTEETTSSS-SEEEEECCTTSSSC----CSS--CEEEEESCHHHHHHHHHHTBTCCCSS--SSC--------
T ss_pred hhhhcceECCeecCCCC-ceEEEeccCccccc----ccc--ceeehhhhHHHHHhhccccccccccc--ccc--------
Confidence 45665431 235555 9998885 4453 333 3566665 444443310 11111000 000
Q ss_pred ccccccccccCCCccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCC-------CCcceEE
Q 001989 407 REQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGL-------PFFDTVK 479 (985)
Q Consensus 407 re~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~-------~~~~~~~ 479 (985)
.+ .+.|...-. ..+ .|++-+..+ +-++++.++-.++++++.+.|.+.. .+... ..+..+.
T Consensus 209 --~~--~~~G~N~rm--~ei---~Aaig~~qL--~~l~~~i~~r~~i~~~y~~~L~~~~--~~~~~~~~~~s~~~~~~~~ 275 (374)
T d1o69a_ 209 --EH--LDYGYNYRL--SNV---LGAIGVAQM--EVLEQRVLKKREIYEWYKEFLGEYF--SFLDELENSRSNRWLSTAL 275 (374)
T ss_dssp --CC--SSCCCBCBC--CHH---HHHHHHHHH--TTHHHHHHHHHHHHHHHHHHHTTTE--ECCCCCTTEECCCSSEEEE
T ss_pred --cc--ccCCccccc--cch---hhhhhHHHH--hhhhhhcchhHHHHHHHHhhccccc--cccccccCCCCChhheeee
Confidence 00 011211110 112 223312222 2356666677788899999998752 11110 1111111
Q ss_pred Ee---------------------cCC-HHHHHHHHHHcCceeeeec------------------------CCeEEEEecc
Q 001989 480 VK---------------------CAD-AHAIASAAYKIEMNLRVVD------------------------SNTVTASFDE 513 (985)
Q Consensus 480 ~~---------------------~~~-~~~v~~~L~~~GI~~~~~~------------------------~~~lris~t~ 513 (985)
+. ... ..++.+.|.++||.++..+ ...+.+=+++
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~gI~~r~~y~pl~~~~~~~~~~~~~~pna~~~~~~~i~LP~~~ 355 (374)
T d1o69a_ 276 INFDKNELNACQKDINISQKNITLHPKISKLIEDLKNKQIETRPLWKAMHTQEVFKGAKAYLNGNSELFFQKGICLPSGT 355 (374)
T ss_dssp ESCCGGGSCCCCEEEECCCCCCCCCHHHHHHHHHHHHTTCCCBCCCCCGGGCGGGTTCEEEECSHHHHHHHHEEEECCCT
T ss_pred eccccccccccccccccchhhccchhhHHHHHHHHHHCCCCEEEeCcchhhChhhhcCCCCCCHHHHHHHhCEEECcCCC
Confidence 11 111 5779999999999653211 1335555677
Q ss_pred CCCHHHHHHHHHHHh
Q 001989 514 TTTLEDVDKLFIVFA 528 (985)
Q Consensus 514 ~~t~edId~li~aL~ 528 (985)
.-|++||++.++.|.
T Consensus 356 ~lt~~di~~I~~~I~ 370 (374)
T d1o69a_ 356 AMSKDDVYEISKLIL 370 (374)
T ss_dssp TCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 789999999998876
|
| >d1kl1a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=99.19 E-value=6.7e-11 Score=129.58 Aligned_cols=305 Identities=13% Similarity=0.132 Sum_probs=184.0
Q ss_pred CCcHHHHHHHHhCCccccccCCChhh-HhhhHHHHHHHH----HHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcC
Q 001989 179 HVPPVILRNIMENPAWYTQYTPYQAE-IAQGRLESLLNF----QTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKG 253 (985)
Q Consensus 179 ~~p~~v~~~i~~~~~~~t~~~pyq~e-~sqg~l~~i~e~----q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~ 253 (985)
++++.+. ..+. +.|..-|.-..|. -..|-.+.+.+. ++.+.+|+|++.+|+-.++|. .+..++.+|+ . +
T Consensus 34 ~~S~~v~-~a~~-S~l~nkyaeG~pg~ryy~G~~~id~iE~la~~ra~~lF~a~~anVqp~SGs-~An~av~~al-l--~ 107 (405)
T d1kl1a_ 34 FVSRAVM-EAQG-SVLTNKYAEGYPGRRYYGGCEYVDIVEELARERAKQLFGAEHANVQPHSGA-QANMAVYFTV-L--E 107 (405)
T ss_dssp CCCHHHH-HHHT-SGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHCCSEEECCCSSHH-HHHHHHHHHH-C--C
T ss_pred cCCHHHH-HHhc-CcccCcCcCCCCCccccCCchhHHHHHHHHHHHHHHHhCCCcceeeccCch-HHHHHHHHHh-c--C
Confidence 4666775 3332 3444555322221 112222334443 356689999998877666554 4556666766 2 3
Q ss_pred CCCEEEEcCC---CChhHHHHHHHhhcCCCeEEEE---------eCchhhhc-c-CCCEeEEEEEcCCCCeeeccHHHHH
Q 001989 254 KKKTFIIASN---CHPQTIDICITRADGFDIKVVV---------SDLKDIDY-K-SGDVCGVLVQYPGTEGEVLDYGDFI 319 (985)
Q Consensus 254 ~g~~Vlv~~~---~H~s~~~~~~~~a~~~gi~v~~---------v~~~~l~~-l-~~~t~~V~v~~pn~~G~v~di~~I~ 319 (985)
+||+|+..+. -|-+.-..... .....++.. +|+|++++ . ..+.++|++-.+.+. ...|++++.
T Consensus 108 pGD~im~l~l~~GGHlshg~~~~~--~g~~~~~~~y~~d~~~~~ID~d~l~~~a~~~kPklIi~G~S~y~-r~~d~~~~r 184 (405)
T d1kl1a_ 108 HGDTVLGMNLSHGGHLTHGSPVNF--SGVQYNFVAYGVDPETHVIDYDDVREKARLHRPKLIVAAASAYP-RIIDFAKFR 184 (405)
T ss_dssp TTCEEEEECGGGTCCGGGTCTTSH--HHHHSEEEEECBCTTTCSBCHHHHHHHHHHHCCSEEEECCSSCC-SCCCHHHHH
T ss_pred CCCEEEEeecccccccccCccccc--cceEEEEEEeccchhcccccHHHHHHHHHhhCcceEEecccccc-cccChHHHH
Confidence 9999997764 44322111110 012334443 23455554 2 234567777655443 345899999
Q ss_pred HHHHhCCcEEEEE-ecCccc---cCCCCCCcccceEEEecC-ccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecC
Q 001989 320 KNAHANGVKVVMA-TDLLAL---TILKPPGELGADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDS 394 (985)
Q Consensus 320 ~~a~~~galliV~-a~~~~l---g~l~~~~~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~ 394 (985)
++|++.|+++++| +|..+| |+..+|-+. ||++.++. |+|.+ |..|++.+++++..++...+
T Consensus 185 eIad~vga~l~~D~aH~~GLIa~g~~~~P~~~-aDvvt~tThKtlrG------Prgg~I~~~~~~~~~i~~av------- 250 (405)
T d1kl1a_ 185 EIADEVGAYLMVDMAHIAGLVAAGLHPNPVPY-AHFVTTTTHKTLRG------PRGGMILCQEQFAKQIDKAI------- 250 (405)
T ss_dssp HHHHHHTCEEEEECTTTHHHHHTTSSCCSTTT-CSEEEEESSSTTCC------CSCEEEEECHHHHHHHHHHH-------
T ss_pred HHHhhhCCEEecchhhHhhhhhhhhcCChhhh-hhheeccccccccC------CCCceEEecchhHHHHHhhh-------
Confidence 9999999999995 444333 566777764 89999999 87754 55689999987765541000
Q ss_pred CCCcceeeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcC-CC
Q 001989 395 SGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQG-LP 473 (985)
Q Consensus 395 ~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~-~~ 473 (985)
..|...-+-+..+.+.+.++ ...+ ....++-+++..++|+.|.+.|.+.| ++++. ..
T Consensus 251 -------------------fPg~qggp~~~~iAa~Aval-~Ea~-~~~fk~Ya~qvv~NAkaLa~~L~~~G-~~vv~ggT 308 (405)
T d1kl1a_ 251 -------------------FPGIQGGPLMHVIAAKAVAF-GEAL-QDDFKAYAKRVVDNAKRLASALQNEG-FTLVSGGT 308 (405)
T ss_dssp -------------------TTTTCSSCCHHHHHHHHHHH-HHHH-SHHHHHHHHHHHHHHHHHHHHHHHTT-CEEGGGSC
T ss_pred -------------------CcccccCcchhHHHHHHHHH-HHHh-ChHHHHHHHHHHHHHHHHHHHHhcCC-ceeecCCC
Confidence 00111111113444444443 2223 34568899999999999999999998 99984 34
Q ss_pred CcceEEEecC--C--HHHHHHHHHHcCceeee----------ecCCeEEEEeccCCC----HHHHHHHHHHHh
Q 001989 474 FFDTVKVKCA--D--AHAIASAAYKIEMNLRV----------VDSNTVTASFDETTT----LEDVDKLFIVFA 528 (985)
Q Consensus 474 ~~~~~~~~~~--~--~~~v~~~L~~~GI~~~~----------~~~~~lris~t~~~t----~edId~li~aL~ 528 (985)
.-+.+.++.. + ..+..+.|.+.||.+.. ..++.||+...+.+| ++|+.++.+.+.
T Consensus 309 d~H~vlvdl~~~~~~g~~ae~~Le~agI~~Nkn~iP~d~~~~~~~SGiRiGT~a~TtrG~~e~dm~~ia~~I~ 381 (405)
T d1kl1a_ 309 DNHLLLVDLRPQQLTGKTAEKVLDEVGITVNKNTIPYDPESPFVTSGIRIGTAAVTTRGFGLEEMDEIAAIIG 381 (405)
T ss_dssp SSSEEEEECGGGTCCHHHHHHHHHHHTEECEECCCTTCSSCTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHH
T ss_pred ccceeeccccccCCcHHHHHHHHHHcCeEEcCCcCCCCCCCCCCCCceeecCHHHHhCCCCHHHHHHHHHHHH
Confidence 4456666653 2 66777778888997642 124789999877554 577777666554
|
| >d1m7ya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Apple (Malus domestica) [TaxId: 3750]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) species: Apple (Malus domestica) [TaxId: 3750]
Probab=99.18 E-value=1.7e-09 Score=122.74 Aligned_cols=259 Identities=14% Similarity=0.156 Sum_probs=158.1
Q ss_pred CCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc----------hhhhc--
Q 001989 226 LPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL----------KDIDY-- 293 (985)
Q Consensus 226 ~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~----------~~l~~-- 293 (985)
.++.++.++.|+|.+++.++.++. ++||+|++++-.|+.+...++. ..|++++.++. +++++
T Consensus 107 ~~pe~I~it~G~~~al~~~~~~l~---~pGd~Vlv~~P~y~~~~~~~~~---~~g~~~v~v~~~~~~~~~l~~~~~~~~~ 180 (431)
T d1m7ya_ 107 FDPNHLVLTAGATSANETFIFCLA---DPGEAVLIPTPYYPGFDRDLKW---RTGVEIVPIHCTSSNGFQITETALEEAY 180 (431)
T ss_dssp CCGGGEEEEEHHHHHHHHHHHHHC---CTTCEEEEEESCCTTHHHHTTT---TTCCEEEEEECCGGGTSCCCHHHHHHHH
T ss_pred CCcceEEECCCHHHHHHHHHHHhc---CCCCEEEEeCCCchhHHHHHHH---hcCceeccccccchhcccccHHHhhhhh
Confidence 467799999999999888877652 3899999999999888877642 34778777643 22221
Q ss_pred -----cCCCEeEEEEEcC-CCCeeec---cHHHHHHHHHhCCcEEEEEecCccccCCCC------------------CCc
Q 001989 294 -----KSGDVCGVLVQYP-GTEGEVL---DYGDFIKNAHANGVKVVMATDLLALTILKP------------------PGE 346 (985)
Q Consensus 294 -----l~~~t~~V~v~~p-n~~G~v~---di~~I~~~a~~~galliV~a~~~~lg~l~~------------------~~~ 346 (985)
...+++++++++| |++|.+. ++++|+++|+++|+++++|. ..+.-.... +..
T Consensus 181 ~~~~~~~~~~~~i~~~nP~NPtG~~~s~~~l~~i~~~a~~~~~~vI~De-~Y~~~~~~~~~~~s~~~~~~~~~~~~~~~~ 259 (431)
T d1m7ya_ 181 QEAEKRNLRVKGVLVTNPSNPLGTTMTRNELYLLLSFVEDKGIHLISDE-IYSGTAFSSPSFISVMEVLKDRNCDENSEV 259 (431)
T ss_dssp HHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEC-TTGGGCCSSSCCCCHHHHTTTTTCSSSSSG
T ss_pred hhhhhccCcceEEEecCccccccccccccccccccccccccCcceeecc-cccccccCCCCCCCHHHHhhhccccccccc
Confidence 2467899999998 7899875 58899999999999999952 222111110 001
Q ss_pred ccceEEEecC-ccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhH
Q 001989 347 LGADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQA 425 (985)
Q Consensus 347 ~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~ 425 (985)
.+-=+++.|. |.|+.| |--+|+++..++++...- +...+.+.++ ..
T Consensus 260 ~~~vi~~~s~SK~~~~~----G~RiG~~~~~~~~i~~~~----------------------------~~~~~~~~~~-~~ 306 (431)
T d1m7ya_ 260 WQRVHVVYSLSKDLGLP----GFRVGAIYSNDDMVVAAA----------------------------TKMSSFGLVS-SQ 306 (431)
T ss_dssp GGGEEEEEESSSSSCCG----GGCEEEEEESCHHHHHHH----------------------------HHHGGGSCCC-HH
T ss_pred CceEEEEecCcccccCC----CCccceeccchhhhHHHH----------------------------HHHhcccccc-cc
Confidence 1112666665 888643 345688887766543220 0000111111 22
Q ss_pred HHHHHHHHHH-HHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCC--CcceEEEecC------C---HHHHHHHHH
Q 001989 426 LLANMAAMYA-VYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLP--FFDTVKVKCA------D---AHAIASAAY 493 (985)
Q Consensus 426 l~a~~aa~~l-~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~--~~~~~~~~~~------~---~~~v~~~L~ 493 (985)
.....++... .....+-+++..++..++.+++.+.|++.| +++..+. +| +-++++ . ..++.++|.
T Consensus 307 ~~~~~~a~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-i~~~~p~gg~f--~w~~l~~~~~~~~~~~~~~l~~~ll 383 (431)
T d1m7ya_ 307 TQHLLSAMLSDKKLTKNYIAENHKRLKQRQKKLVSGLQKSG-ISCLNGNAGLF--CWVDMRHLLRSNTFEAEMELWKKIV 383 (431)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT-CEECCCCSSSE--EEEECGGGSSSSSHHHHHHHHHHHH
T ss_pred ccchhhhhhccchhhhhhhhhhhhhhhhhhhhhhhhhhcCC-cEEecCCceeE--EEEECccccccCcccCHHHHHHHHH
Confidence 2222222211 111122345666777788888999999888 8876421 22 223332 1 346777776
Q ss_pred H-cCceeee------ecCCeEEEEeccCCCHHHHHHHHHHHh
Q 001989 494 K-IEMNLRV------VDSNTVTASFDETTTLEDVDKLFIVFA 528 (985)
Q Consensus 494 ~-~GI~~~~------~~~~~lris~t~~~t~edId~li~aL~ 528 (985)
+ +||.+.+ ..++.+|+|+.. .++++++..++.|+
T Consensus 384 ~~~gV~v~PG~~F~~~~~~~~Ri~~a~-~~e~~l~~al~rL~ 424 (431)
T d1m7ya_ 384 YEVHLNISPGSSCHCTEPGWFRVCFAN-LPERTLDLAMQRLK 424 (431)
T ss_dssp HTSCEECEEGGGGTCSSTTEEEEECSS-SCHHHHHHHHHHHH
T ss_pred HHCCEEEEeccccCCCCCCEEEEEeCc-CCHHHHHHHHHHHH
Confidence 4 5998743 125789999752 45667777666654
|
| >d1iaya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Tomato (Lycopersicon esculentum) [TaxId: 4081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) species: Tomato (Lycopersicon esculentum) [TaxId: 4081]
Probab=99.17 E-value=1.5e-09 Score=123.03 Aligned_cols=259 Identities=14% Similarity=0.177 Sum_probs=153.4
Q ss_pred CCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCch----------hhh---
Q 001989 226 LPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDLK----------DID--- 292 (985)
Q Consensus 226 ~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~~----------~l~--- 292 (985)
.++.++.+++|++.+++.++.++. ++||+|+++.-.|+.+...+. ...|++++.++.+ +++
T Consensus 106 ~~~e~Ivit~G~~~al~~~~~~l~---~~Gd~Vlv~~P~y~~~~~~~~---~~~g~~~v~v~~~~~~~~~~d~~~~~~~~ 179 (428)
T d1iaya_ 106 FDPERVVMAGGATGANETIIFCLA---DPGDAFLVPSPYYPAFNRDLR---WRTGVQLIPIHCESSNNFKITSKAVKEAY 179 (428)
T ss_dssp CCTTSCEEEEHHHHHHHHHHHHHC---CTTCEEEEESSCCTTHHHHTT---TTTCCEEEEECCCTTTTTCCCHHHHHHHH
T ss_pred CChhhEEEcCCHHHHHHHHHHHhC---CCCCEEEEccCCchHHHHHHH---HhcCCeEEEeecccccccccccccccchh
Confidence 356789999999988888776652 389999999999998887663 2358888887542 221
Q ss_pred -c---cCCCEeEEEEEcC-CCCeeec---cHHHHHHHHHhCCcEEEEEecCccccCCCCC---------C-------ccc
Q 001989 293 -Y---KSGDVCGVLVQYP-GTEGEVL---DYGDFIKNAHANGVKVVMATDLLALTILKPP---------G-------ELG 348 (985)
Q Consensus 293 -~---l~~~t~~V~v~~p-n~~G~v~---di~~I~~~a~~~galliV~a~~~~lg~l~~~---------~-------~~G 348 (985)
. .+++++++++.+| |.+|.+. ++++|+++|+++|+++++|. ..+......+ . ...
T Consensus 180 ~~~~~~~~~~~~~~l~nP~NPtG~~~s~~~~~~i~~~a~~~~~~vI~De-~Y~~~~~~~~~~~s~~~~~~~~~~~~~~~~ 258 (428)
T d1iaya_ 180 ENAQKSNIKVKGLILTNPSNPLGTTLDKDTLKSVLSFTNQHNIHLVCDE-IYAATVFDTPQFVSIAEILDEQEMTYCNKD 258 (428)
T ss_dssp HHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEEC-TTGGGCCSSSCCCCHHHHHTSGGGTTSCTT
T ss_pred hhhhccCCCceEEEEccCCCcccccccccccchhheeeccCcEEEEecc-cccccccCcccccccccccchhhccccccc
Confidence 1 4678999999998 7899876 48999999999999999953 3222111100 0 011
Q ss_pred ceEEEecC-ccccccCCCCCCcEEEEEEch-hhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHH
Q 001989 349 ADIVVGSA-QRFGVPMGYGGPHAAFLATSQ-EYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQAL 426 (985)
Q Consensus 349 aDi~v~s~-k~lg~P~~~GGP~~G~l~~~~-~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l 426 (985)
--+++.|. |.|+.| |--+|+++... .+.+.+. . ..+...++....
T Consensus 259 ~vi~~~s~SK~~~~~----GlRiG~~~~~~~~l~~~~~----------------------------~-~~~~~~~~~~~~ 305 (428)
T d1iaya_ 259 LVHIVYSLSKDMGLP----GFRVGIIYSFNDDVVNCAR----------------------------K-MSSFGLVSTQTQ 305 (428)
T ss_dssp SEEEEEESTTTSSCG----GGCEEEEEESCHHHHHHHH----------------------------H-HHTTSCCCHHHH
T ss_pred eEEEEecCCCcccCC----Ccccccccccccchhhhhh----------------------------h-hhcccccccccc
Confidence 13566665 877543 33468877643 3332220 0 001111111222
Q ss_pred HHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCC--CCcceEEEecC------C---HHHHHHHHHH-
Q 001989 427 LANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGL--PFFDTVKVKCA------D---AHAIASAAYK- 494 (985)
Q Consensus 427 ~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~--~~~~~~~~~~~------~---~~~v~~~L~~- 494 (985)
.++.+.+.......+-+++..++..++.+++.+.|+..| +++..+ .+| +-++.+ . ..++.++|.+
T Consensus 306 ~~~~a~l~~~~~~~~~~~~~~~~l~~r~~~~~~~L~~~g-i~~~~p~gg~f--~w~~l~~~~~~~~~~~~~~l~~~Ll~~ 382 (428)
T d1iaya_ 306 YFLAAMLSDEKFVDNFLRESAMRLGKRHKHFTNGLEVVG-IKCLKNNAGLF--CWMDLRPLLRESTFDSEMSLWRVIIND 382 (428)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CCBCCCSSSSE--EEEECGGGCSSSSHHHHHHHHHHHHHT
T ss_pred cchhhhhhhhccccccccccccccchhHHHHHHHHHhCC-CEEecCCcceE--EEEECccccccCCCCCHHHHHHHHHHh
Confidence 122221100000112345566666777888999998887 876532 222 122322 1 3467777765
Q ss_pred cCceeee------ecCCeEEEEeccCCCHHHHHHHHHHHh
Q 001989 495 IEMNLRV------VDSNTVTASFDETTTLEDVDKLFIVFA 528 (985)
Q Consensus 495 ~GI~~~~------~~~~~lris~t~~~t~edId~li~aL~ 528 (985)
+||.+.+ ..++.+|+|+.. .++++|+..++.|+
T Consensus 383 ~gV~v~PG~~F~~~~~g~~Ris~a~-~~~~~l~~al~Rl~ 421 (428)
T d1iaya_ 383 VKLNVSPGSSFECQEPGWFRVCFAN-MDDGTVDIALARIR 421 (428)
T ss_dssp SCEECEEGGGGTCSSSSEEEEECSS-SCHHHHHHHHHHHH
T ss_pred CCEEEEcchhcCCCCCCEEEEEeCC-CCHHHHHHHHHHHH
Confidence 5997743 125889999853 34555655444443
|
| >d1vp4a_ c.67.1.1 (A:) Putative aminotransferase TM1131 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative aminotransferase TM1131 species: Thermotoga maritima [TaxId: 2336]
Probab=99.17 E-value=1.1e-09 Score=123.67 Aligned_cols=262 Identities=14% Similarity=0.073 Sum_probs=151.0
Q ss_pred CCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCch-------hhh------
Q 001989 226 LPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDLK-------DID------ 292 (985)
Q Consensus 226 ~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~~-------~l~------ 292 (985)
.++.++.++.|++.++..+..++. ++||+|++++-.++.+...++ ..|.+++.++.+ .++
T Consensus 102 ~~~~~I~it~G~~~al~~~~~~~~---~~Gd~Vlv~~P~y~~~~~~~~----~~g~~~~~~~~~~~~~~~~~l~~~~~~~ 174 (420)
T d1vp4a_ 102 LDEDNLIFTVGSQQALDLIGKLFL---DDESYCVLDDPAYLGAINAFR----QYLANFVVVPLEDDGMDLNVLERKLSEF 174 (420)
T ss_dssp CCGGGEEEEEHHHHHHHHHHHHHC---CTTCEEEEEESCCHHHHHHHH----TTTCEEEEEEEETTEECHHHHHHHHHHH
T ss_pred CCHHHeEeccchhhhHHHHHHhhh---ccccccccccccccchhHHHH----HHhhhcccccccccccccchhhhhhhhh
Confidence 467789999999987766555542 489999999999999888765 457777776542 111
Q ss_pred -c--cCCCEeEE-EEEcC-CCCeeec---cHHHHHHHHHhCCcEEEEEecCcc-ccCCC---CC----CcccceEEEecC
Q 001989 293 -Y--KSGDVCGV-LVQYP-GTEGEVL---DYGDFIKNAHANGVKVVMATDLLA-LTILK---PP----GELGADIVVGSA 356 (985)
Q Consensus 293 -~--l~~~t~~V-~v~~p-n~~G~v~---di~~I~~~a~~~galliV~a~~~~-lg~l~---~~----~~~GaDi~v~s~ 356 (985)
. ...+.+.+ ++.+| |++|.+. ++++|+++|++++++++++. ... +..-. .+ ...+.-+++++.
T Consensus 175 ~~~~~~~~~~~~~~~~~p~NPtG~~~s~~~~~~i~~~a~~~~i~ii~De-~y~~l~~~~~~~~~~~~~~~~~~~i~~~s~ 253 (420)
T d1vp4a_ 175 DKNGKIKQVKFIYVVSNFHNPAGVTTSLEKRKALVEIAEKYDLFIVEDD-PYGALRYEGETVDPIFKIGGPERVVLLNTF 253 (420)
T ss_dssp HHTTCGGGEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEC-SSTTCBCSSCCCCCHHHHHCTTTEEEEEES
T ss_pred HHHhhccccceeeEecCCCCccchhhhhhhhhhhhhhhhcccccccccc-hhhhccccCcccccccccccccceeEEecc
Confidence 1 12234444 45566 7899875 68999999999999999953 322 21111 11 123444666666
Q ss_pred ccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHHH
Q 001989 357 QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAV 436 (985)
Q Consensus 357 k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~ 436 (985)
|+++.| |--+|+++..+++++.+-. -+...+.|++....+.++.....
T Consensus 254 sk~~~~----G~RiG~~~~~~~~i~~l~~----------------------------~~~~~~~~~~~~~q~~~a~~l~~ 301 (420)
T d1vp4a_ 254 SKVLAP----GLRIGMVAGSKEFIRKIVQ----------------------------AKQSADLCSPAITHRLAARYLER 301 (420)
T ss_dssp TTTTCG----GGCEEEEECCHHHHHHHHH----------------------------HHHHHHSSCCHHHHHHHHHHHHH
T ss_pred cccccc----ccccccccccchhhhhhhh----------------------------hhhhccccCchhhhhhhhhhccc
Confidence 665433 2356999888887765410 00111223333332333322111
Q ss_pred HhCcchHHHHHHHHHHHHHHHHHHHh----cCCCeEEcCCCCcceEEEecCC---HHHHHHHHHHcCceeeee-------
Q 001989 437 YHGPEGLKTIAQRVHGLAGTFALGLK----KLGTVEVQGLPFFDTVKVKCAD---AHAIASAAYKIEMNLRVV------- 502 (985)
Q Consensus 437 ~~g~~Gl~~i~~~~~~~a~~l~~~L~----~~g~~~~~~~~~~~~~~~~~~~---~~~v~~~L~~~GI~~~~~------- 502 (985)
....+-+++..+...+..+.+.+.|+ ++.|+++..+...--+-+++++ ..++.+.|.++||.+.+-
T Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~g~~~~~p~gg~f~~~~~~~~~d~~~~~~~l~~~gV~v~PG~~F~~~~ 381 (420)
T d1vp4a_ 302 YDLLEQLKPTIELYRRKRTVMLNALEEYFSDIPGVKWVKSEGGLFIWLTLPEGFDTWEMFEYAKRKKVFYVPGRVFKVYD 381 (420)
T ss_dssp SCHHHHTHHHHHHHHHHHHHHHHHHHHHSTTSTTCEECCCSBSSEEEEECCTTCCTTTTHHHHHHHTEECEEGGGGCTTC
T ss_pred ccccccchhHHHHhhhhcccchhhhhhhhccCCCcEEecCCceEEEEEECCCCCCHHHHHHHHHHCCeEEEechhhCCCC
Confidence 11111233444444444444444444 4434776532111112345543 667888899999976421
Q ss_pred -cCCeEEEEeccCCCHHHHHHHHHHHh
Q 001989 503 -DSNTVTASFDETTTLEDVDKLFIVFA 528 (985)
Q Consensus 503 -~~~~lris~t~~~t~edId~li~aL~ 528 (985)
..+.+|+|++. .+.|++++.++.|+
T Consensus 382 ~~~~~iRls~~~-~~~e~l~~a~~rL~ 407 (420)
T d1vp4a_ 382 EPSPSMRLSFCL-PPDEKIVEGIKRLR 407 (420)
T ss_dssp CCCSEEEEECSS-SCHHHHHHHHHHHH
T ss_pred CCCCEEEEEeCc-CCHHHHHHHHHHHH
Confidence 13689999863 46777777666665
|
| >d2q7wa1 c.67.1.1 (A:1-396) Aspartate aminotransferase, AAT {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Escherichia coli [TaxId: 562]
Probab=99.16 E-value=7.2e-11 Score=132.71 Aligned_cols=256 Identities=9% Similarity=0.050 Sum_probs=148.9
Q ss_pred CCCCEEEEcCCCCcccHHHHHHCCcEEEEEcCCC--CCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccc--cCHHHH
Q 001989 678 HHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDA--KGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYE--EGIDEI 752 (985)
Q Consensus 678 ~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~d~--~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~--~di~eI 752 (985)
.+++.|+++++.++.+...+...|++++.+|... ++..+.+.+.+.+.+..++++++++++| |++|.+. ..+++|
T Consensus 118 ~~gd~Vlvp~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~P~NPTG~~~s~e~~~~l 197 (396)
T d2q7wa1 118 TSVKRVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFHGCCHNPTGIDPTLEQWQTL 197 (396)
T ss_dssp SCCCEEEEEESCCTHHHHHHHHTTCEEEEEECEETTTTEECHHHHHHHHTTCCTTCEEEEECSSCTTTCCCCCHHHHHHH
T ss_pred ccceEEEEecCCCccchHHHHHcCCeeEecccccccccccccchHHHHHHHhccCcEEEEecCCcCCcCeecCHHHHHHH
Confidence 4789999999988888888899999999999743 3456788888777655578888999998 5799985 358899
Q ss_pred HHHHHHcCCEEEEEccccccccCCCC----------CCccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCC
Q 001989 753 CKIIHDNGGQVYMDGANMNAQVGLTS----------PGYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSH 822 (985)
Q Consensus 753 ~~la~~~galliVD~a~~~~~~~l~~----------pg~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~ 822 (985)
.++|++++++++.|.++. .+. +.. +......++..++.|.+++| |.++|++.+.....+.....
T Consensus 198 ~~la~~~~~~ii~De~Y~-~l~-~~~~~~~~~~~~~~~~~~~~~~~~s~sk~~~~~----G~R~G~~~~~~~~~~~~~~~ 271 (396)
T d2q7wa1 198 AQLSVEKGWLPLFDFAYQ-GFA-RGLEEDAEGLRAFAAMHKELIVASSYSKNFGLY----NERVGACTLVAADSETVDRA 271 (396)
T ss_dssp HHHHHHHTCEEEEEESCT-TSS-SCHHHHTHHHHHHHHHCSCEEEEEECTTTTTCG----GGCCEEEEEECSSHHHHHHH
T ss_pred HHHHhcCCeEEEEecccc-ccc-cCCccCchHhhhhhhhccccccccccccccccc----CCCccccccchhHHHHHHHh
Confidence 999999999999999873 111 110 01112346667777888654 78999999886544321100
Q ss_pred ccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHH--HHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCe--e-ecC
Q 001989 823 PVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISY--TYIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPI--L-FRG 896 (985)
Q Consensus 823 ~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~--a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l--~-~~~ 896 (985)
...... . .... ..+++..++... ...+ ........+.+.+..++..++++.+.+.|++ +... . +..
T Consensus 272 ~~~~~~----~-~~~~--~~~~~~~~q~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~~ 343 (396)
T d2q7wa1 272 FSQMKA----A-IRAN--YSNPPAHGASVV-ATILSNDALRAIWEQELTDMRQRIQRMRQLFVNTLQEKGANRDFSFIIK 343 (396)
T ss_dssp HHHHHH----H-HHTT--TSSCCHHHHHHH-HHHHTSHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHTTCCSCCTHHHH
T ss_pred hhhhhh----h-hhcc--ccCCCHHHHHHH-HHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcceecC
Confidence 000000 0 0000 111111112111 0000 0001111233445555667778888999976 3321 1 112
Q ss_pred CCCceeeEEEEEecCccccCCCCHHHHHHHH-HHCCCccCCCCCCCCCEEEEeccCCCCHHHHHHHHccCChhHH
Q 001989 897 VNGTVAHEFIVDLRGLKNTAGIEPEDVAKRL-MDYGFHGPTMSWPVPGTLMIEPTESESKSWTGIVMLSSPSEKK 970 (985)
Q Consensus 897 ~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L-~~~Gi~~~~~~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~ 970 (985)
+.+ .| .. + +.+.+. +++| .++||++. ++. ||++.- .+.++|++ ++++++++
T Consensus 344 ~~G-~F---~~-~-------~l~~e~-~~~L~~e~gV~~~------~g~-Ri~~a~-l~~~~i~~--~~~ai~~v 395 (396)
T d2q7wa1 344 QNG-MF---SF-S-------GLTKEQ-VLRLREEFGVYAV------ASG-RVNVAG-MTPDNMAP--LCEAIVAV 395 (396)
T ss_dssp CCS-SE---EE-C-------CCCHHH-HHHHHHHHCEECC------TTC-EEEGGG-CCTTTHHH--HHHHHHHH
T ss_pred CCe-EE---Ee-e-------CCCHHH-HHHHHHhCCEEEC------CCC-EEEecC-CCHHHHHH--HHHHHHHh
Confidence 223 22 11 1 344444 5555 45688652 122 888753 34667898 66776665
|
| >d1xi9a_ c.67.1.1 (A:) Putative alanine aminotransferase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative alanine aminotransferase species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.15 E-value=3.3e-09 Score=118.81 Aligned_cols=325 Identities=13% Similarity=0.136 Sum_probs=180.0
Q ss_pred HHHHhcCCCccceecCCCC---CCCCCcHHHHHHHHhCC-ccccccCCChhhHhhhHHHHHHHHHHHHHHhcCC--CCcc
Q 001989 157 MQKLASMNKVYKSFIGMGY---YNTHVPPVILRNIMENP-AWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGL--PMSN 230 (985)
Q Consensus 157 ~~~l~~~n~~~~~~lG~g~---y~~~~p~~v~~~i~~~~-~~~t~~~pyq~e~sqg~l~~i~e~q~~ia~L~g~--~~~~ 230 (985)
.++|.++++...+ ++.|- .+...|+.+.+++.+.- +..+.|+|.+ |..+.-......+.+..|. ++.+
T Consensus 22 a~~l~~~G~~vi~-l~~G~P~~~df~~p~~i~~a~~~a~~~~~~~Y~~~~-----G~~~LR~aia~~~~~~~g~~~~~~~ 95 (395)
T d1xi9a_ 22 ARELEKKGIKVIR-LNIGDPVKFDFQPPEHMKEAYCKAIKEGHNYYGDSE-----GLPELRKAIVEREKRKNGVDITPDD 95 (395)
T ss_dssp HHHHHHTTCCCEE-CCCCCGGGTTCCCCHHHHHHHHHHHHTTCCSCCCTT-----CCHHHHHHHHHHHHHHHCCCCCGGG
T ss_pred HHHHHHCCCCeEE-CCCCCCCCCCCCCCHHHHHHHHHHHhcCCCCCCCCC-----CCHHHHHHHHHhhhhcccccccccc
Confidence 3445555544322 35553 23446666654444221 2245676543 3222222222344444455 4568
Q ss_pred eeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc----------hhhhc-cCCCEe
Q 001989 231 ASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL----------KDIDY-KSGDVC 299 (985)
Q Consensus 231 ~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~----------~~l~~-l~~~t~ 299 (985)
+.++.|++.++..+..++. .+||+|++++-.++.+...++. .|.+++.++. +++++ +.++++
T Consensus 96 i~i~~G~~~~~~~~~~~~~---~~Gd~vlv~~P~y~~~~~~~~~----~g~~~v~v~~~~~~~~~~d~~~~~~~~~~~~~ 168 (395)
T d1xi9a_ 96 VRVTAAVTEALQLIFGALL---DPGDEILVPGPSYPPYTGLVKF----YGGKPVEYRTIEEEDWQPDIDDIRKKITDRTK 168 (395)
T ss_dssp EEEESHHHHHHHHHHHHHC---CTTCEEEEEESCCHHHHHHHHH----TTCEEEEEEEEGGGTSEECHHHHHHHCCTTEE
T ss_pred cccccccchhhhhhhhhhc---CCCCEEEEcCCccccchhhhhh----cCCEEEEEeccccccccchHHHHHHhhccccc
Confidence 8888988887766655542 3899999999999988877653 4777766642 34444 778999
Q ss_pred EEEEEcC-CCCeeec---cHHHHHHHHHhCCcEEEEEecCccccCCC----CCCcc--cce-EEEecC-ccccccCCCCC
Q 001989 300 GVLVQYP-GTEGEVL---DYGDFIKNAHANGVKVVMATDLLALTILK----PPGEL--GAD-IVVGSA-QRFGVPMGYGG 367 (985)
Q Consensus 300 ~V~v~~p-n~~G~v~---di~~I~~~a~~~galliV~a~~~~lg~l~----~~~~~--GaD-i~v~s~-k~lg~P~~~GG 367 (985)
+|++.+| |++|.+. .+++|+++|+++|++++.+. ........ .+..+ ... |++.|. |.|+.| |
T Consensus 169 ~v~l~~P~NPTG~~~s~~~~~~l~~~~~~~~~~ii~De-~y~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~~----G 243 (395)
T d1xi9a_ 169 AIAVINPNNPTGALYDKKTLEEILNIAGEYEIPVISDE-IYDLMTYEGEHISPGSLTKDVPVIVMNGLSKVYFAT----G 243 (395)
T ss_dssp EEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEEC-TTTTCBSSSCCCCHHHHCSSSCEEEEEESTTTTCCG----G
T ss_pred EEEecCCCCCccchhhHHHHHHHHhhhhhcCeeEEecc-ccccccccccccchhhcCCCCCEEEEeCcchhcccc----h
Confidence 9999998 8899886 47899999999999888743 32221111 11111 112 566665 877644 2
Q ss_pred CcEEEEEEch--hhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcchHHH
Q 001989 368 PHAAFLATSQ--EYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKT 445 (985)
Q Consensus 368 P~~G~l~~~~--~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~ 445 (985)
--+|++++.. ..+..+ ++ ......+...|.+.. +..++......+.+-+++
T Consensus 244 lRvG~~~~~~~~~~~~~~-----------------------~~--~~~~~~~~~~~~~~~--~q~a~~~~l~~~~~~~~~ 296 (395)
T d1xi9a_ 244 WRLGYMYFVDPENKLSEV-----------------------RE--AIDRLARIRLCPNTP--AQFAAIAGLTGPMDYLKE 296 (395)
T ss_dssp GCCEEEEEECTTCTTHHH-----------------------HH--HHHHHHHHTCCSCSH--HHHHHHHHHHSCCHHHHH
T ss_pred hhcEeeEecCHHHHHHHH-----------------------HH--HHHHhhcCCCCcCHH--HHHHHHHHhcCCHHHHHH
Confidence 2356665431 100000 00 000001111222221 112222112234455777
Q ss_pred HHHHHHHHHHHHHHHHhcCCCeEEcCC--CCcceEEEecC---CHHHHHHHHH-HcCceeeee------cCCeEEEEecc
Q 001989 446 IAQRVHGLAGTFALGLKKLGTVEVQGL--PFFDTVKVKCA---DAHAIASAAY-KIEMNLRVV------DSNTVTASFDE 513 (985)
Q Consensus 446 i~~~~~~~a~~l~~~L~~~g~~~~~~~--~~~~~~~~~~~---~~~~v~~~L~-~~GI~~~~~------~~~~lris~t~ 513 (985)
..+...++.+++.+.|++++++.+..+ .++-=+.+... +..++.+.|. ++||.+.+- .++.+|+++.
T Consensus 297 ~~~~~~~~~~~l~~~L~~~~~~~~~~p~gg~~~~~~l~~~~~~~~~~~~~~ll~~~gV~v~PG~~Fg~~~~~~~Ris~~- 375 (395)
T d1xi9a_ 297 YMKKLKERRDYIYKRLNEIPGISTTKPQGAFYIFPKIEVGPWKNDKEFVLDVLHNAHVLFVHGSGFGEYGAGHFRAVFL- 375 (395)
T ss_dssp HHHHHHHHHHHHHHHHHTSTTEECCCCCBSSEECCEECSCSCSSHHHHHHHHHHHHCEECEEGGGGCGGGTTBEEEECC-
T ss_pred HHHHHHHHHHHHHHHHHhCCCceecCCCeeEEEeEECCCCCCCCHHHHHHHHHHhCCEEEEcChhhCCCCCCEEEEEec-
Confidence 888888999999999999875555422 11111112221 2455555554 669977431 2578999975
Q ss_pred CCCHHHHHHHHHHHh
Q 001989 514 TTTLEDVDKLFIVFA 528 (985)
Q Consensus 514 ~~t~edId~li~aL~ 528 (985)
+++|++++.++.|+
T Consensus 376 -~~~e~l~eal~rl~ 389 (395)
T d1xi9a_ 376 -PPIEILEEAMDRFE 389 (395)
T ss_dssp -SCHHHHHHHHHHHH
T ss_pred -CCHHHHHHHHHHHH
Confidence 57777766666554
|
| >d1w7la_ c.67.1.1 (A:) Kynurenine--oxoglutarate transaminase I {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Kynurenine--oxoglutarate transaminase I species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.14 E-value=6.1e-09 Score=117.51 Aligned_cols=312 Identities=10% Similarity=0.082 Sum_probs=182.4
Q ss_pred cCCCCCCCCCcHHHHHHH---HhCCccccccCCChhhHhhhHHHHHHHHHHHHHHhcCCCC---cceeeccchHHHHHHH
Q 001989 171 IGMGYYNTHVPPVILRNI---MENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPM---SNASLLDEGTAAAEAM 244 (985)
Q Consensus 171 lG~g~y~~~~p~~v~~~i---~~~~~~~t~~~pyq~e~sqg~l~~i~e~q~~ia~L~g~~~---~~~sl~~~~ta~~ea~ 244 (985)
+|.|.-+...|+.+.+++ +..+..++.|+|- +|..+.-....+.+.+.+|.+. .++.+++|++.++..+
T Consensus 30 l~~G~p~~~~p~~v~~a~~~al~~~~~~~~Y~~~-----~G~~~LReaia~~~~~~~g~~~~~~~~I~it~G~~~al~~~ 104 (418)
T d1w7la_ 30 LGQGFPDFPPPDFAVEAFQHAVSGDFMLNQYTKT-----FGYPPLTKILASFFGELLGQEIDPLRNVLVTVGGYGALFTA 104 (418)
T ss_dssp CCCCSCSSCCCHHHHHHHHHHTSSCGGGGSCCCT-----TCCHHHHHHHHHHHHHHHTCCCCHHHHEEEESHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHhCCCcccCCCCC-----cCCHHHHHHHHHHHHHHhCCCCCcccceeeccCcHHHHHHH
Confidence 466653344566665433 3444445556543 3444433334445555567763 4788999999877776
Q ss_pred HHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc--------------------hhhhc-cCCCEeEEEE
Q 001989 245 AMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL--------------------KDIDY-KSGDVCGVLV 303 (985)
Q Consensus 245 ~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~--------------------~~l~~-l~~~t~~V~v 303 (985)
+.++. ++|+.|+++.-.++.+...+.. .|.+++.++. +++.. ..++++++++
T Consensus 105 ~~~l~---~~g~~vlv~~p~~~~y~~~~~~----~g~~~v~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~i~~ 177 (418)
T d1w7la_ 105 FQALV---DEGDEVIIIEPFFDCYEPMTMM----AGGRPVFVSLKPGPIQNGELGSSSNWQLDPMELAGKFTSRTKALVL 177 (418)
T ss_dssp HHHHC---CTTCEEEEEESCCTTHHHHHHH----TTCEEEEEECEECC---CCSEEGGGEECCHHHHHHHCCTTEEEEEE
T ss_pred HHhhc---cCCceeeccccccchhHHHHHH----cCCEeeccccccccccccccccccCcccchhhhhccccccccceec
Confidence 65542 3899999999999988877654 4555554432 11222 5678999999
Q ss_pred EcC-CCCeeec---cHHHHHHHHHhCCcEEEEEecCcccc--C-C-CCC---Cccc-ceEEEecC-ccccccCCCCCCcE
Q 001989 304 QYP-GTEGEVL---DYGDFIKNAHANGVKVVMATDLLALT--I-L-KPP---GELG-ADIVVGSA-QRFGVPMGYGGPHA 370 (985)
Q Consensus 304 ~~p-n~~G~v~---di~~I~~~a~~~galliV~a~~~~lg--~-l-~~~---~~~G-aDi~v~s~-k~lg~P~~~GGP~~ 370 (985)
.+| |.+|.+. .+++|+++|++++++++.|.-...+. . . .+. .+++ =-+++.|. |.++.| |--+
T Consensus 178 ~~p~NPtG~~~s~~~~~~i~~~a~~~~v~vI~De~Y~~l~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~p----G~Rv 253 (418)
T d1w7la_ 178 NTPNNPLGKVFSREELELVASLCQQHDVVCITDEVYQWMVYDGHQHISIASLPGMWERTLTIGSAGKTFSAT----GWKV 253 (418)
T ss_dssp ESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHTTCG----GGCC
T ss_pred cCcCCcccccccHHHHHHHHHHHHhcCCCchhhhhhHHhhcCCCCCCCHHHccccccccceecccCccccCC----CCcc
Confidence 988 7899875 68899999999999999953211111 0 0 011 1122 24566665 888654 2346
Q ss_pred EEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHH-HHHh---CcchHHHH
Q 001989 371 AFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMY-AVYH---GPEGLKTI 446 (985)
Q Consensus 371 G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~-l~~~---g~~Gl~~i 446 (985)
|++.+.+++++.+.. . +...+.+. ++....+...++. .... ..+-++..
T Consensus 254 G~~v~~~~~~~~l~~-------------------------~-~~~~~~~~-~~~~q~~~~~~l~~~~~~~~~~~~~~~~~ 306 (418)
T d1w7la_ 254 GWVLGPDHIMKHLRT-------------------------V-HQNSVFHC-PTQSQAAVAESFEREQLLFRQPSSYFVQF 306 (418)
T ss_dssp EEEECCHHHHHHHHH-------------------------H-HHTTTSCC-CHHHHHHHHHHHHHHHHTTTSTTSHHHHH
T ss_pred cccccchhhhhhhcc-------------------------c-cccccccc-cchhhHHHHHHhhhccccccccccccccc
Confidence 888888776654410 0 00011111 1122222222221 1111 12345666
Q ss_pred HHHHHHHHHHHHHHHhcCCCeEEcCC--CCcceEEE------------ecCC--HHHHHHHHH-HcCceeee---e----
Q 001989 447 AQRVHGLAGTFALGLKKLGTVEVQGL--PFFDTVKV------------KCAD--AHAIASAAY-KIEMNLRV---V---- 502 (985)
Q Consensus 447 ~~~~~~~a~~l~~~L~~~g~~~~~~~--~~~~~~~~------------~~~~--~~~v~~~L~-~~GI~~~~---~---- 502 (985)
.++..++.+++.+.|+++| +++..+ .++--+.+ ..+. ..++.++|. ++||.+.+ .
T Consensus 307 ~~~~~~~r~~l~~~L~~~g-~~~~~P~gg~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~PG~~F~~~~ 385 (418)
T d1w7la_ 307 PQAMQRCRDHMIRSLQSVG-LKPLIPQGSYFLITDISDFKRKMPDLPGAVDEPYDRRFVKWMIKNKGLVAIPVSIFYSVP 385 (418)
T ss_dssp HHHHHHHHHHHHHHHHTTT-CEEEECSBSSEEEEECHHHHHHCCCCCCCTTCCHHHHHHHHHHHHHCEECEEGGGGSCHH
T ss_pred hhhhhhhhhhhhhhhhhcC-CcccCCCceeEEEEECcccccccchhccccccccHHHHHHHHHHHCCEEEEcchhhcCCC
Confidence 7777888889999999997 876521 22211111 1111 456777765 56997632 1
Q ss_pred ----cCCeEEEEeccCCCHHHHHHHHHHHh
Q 001989 503 ----DSNTVTASFDETTTLEDVDKLFIVFA 528 (985)
Q Consensus 503 ----~~~~lris~t~~~t~edId~li~aL~ 528 (985)
..+++|+|+. ++++++++.++.|+
T Consensus 386 ~~~~~~~~iRis~~--~~~~~l~~a~~rl~ 413 (418)
T d1w7la_ 386 HQKHFDHYIRFCFV--KDEATLQAMDEKLR 413 (418)
T ss_dssp HHTTSCSEEEEECC--CCHHHHHHHHHHHH
T ss_pred ccCCCCCEEEEEEc--CCHHHHHHHHHHHH
Confidence 1368999974 58888999888886
|
| >d1c7na_ c.67.1.3 (A:) Cystalysin {Treponema denticola [TaxId: 158]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystalysin species: Treponema denticola [TaxId: 158]
Probab=99.13 E-value=4.9e-09 Score=117.35 Aligned_cols=268 Identities=9% Similarity=-0.001 Sum_probs=155.9
Q ss_pred HHHHHHHh----cCC--CCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc-
Q 001989 216 FQTMIADL----TGL--PMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL- 288 (985)
Q Consensus 216 ~q~~ia~L----~g~--~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~- 288 (985)
+++.+|+. .|. ++.++.+++|++.++..++.++ -++||+|+++.-.++.+..... ..|.+.+.++.
T Consensus 71 Lr~aia~~~~~~~g~~~~~~~I~vt~G~~~al~~~~~~~---~~pgd~vi~~~p~~~~~~~~~~----~~g~~~v~~~~~ 143 (394)
T d1c7na_ 71 YKKTVKKWMKDRHQWDIQTDWIINTAGVVPAVFNAVREF---TKPGDGVIIITPVYYPFFMAIK----NQERKIIECELL 143 (394)
T ss_dssp HHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHHHHHHHH---CCTTCEEEECSSCCTHHHHHHH----TTTCEEEECCCE
T ss_pred HHHHHHHHHHHhcCCCCCCcceEeeccchhhhhhhhccc---cccccccccccCcccchhhHHh----hhhhcccccccc
Confidence 34444444 355 5678999999998777666554 2489999999988887777654 34666666543
Q ss_pred ----------hhhhc--cCCCEeEEEEEcC-CCCeeec---cHHHHHHHHHhCCcEEEEEecCccccCCC----CC----
Q 001989 289 ----------KDIDY--KSGDVCGVLVQYP-GTEGEVL---DYGDFIKNAHANGVKVVMATDLLALTILK----PP---- 344 (985)
Q Consensus 289 ----------~~l~~--l~~~t~~V~v~~p-n~~G~v~---di~~I~~~a~~~galliV~a~~~~lg~l~----~~---- 344 (985)
++++. .+++|+++++.+| |++|.+. .+++|+++|+++++++++|. ..+--... .+
T Consensus 144 ~~~~~~~~d~~~~~~~~~~~~~~~i~l~~P~NPTG~v~s~~~l~~l~~~a~~~~~~ii~De-~Y~~~~~~~~~~~~~~~~ 222 (394)
T d1c7na_ 144 EKDGYYTIDFQKLEKLSKDKNNKALLFCSPHNPVGRVWKKDELQKIKDIVLKSDLMLWSDE-IHFDLIMPGYEHTVFQSI 222 (394)
T ss_dssp EETTEEECCHHHHHHHHTCTTEEEEEEESSBTTTTBCCCHHHHHHHHHHHHHSSCEEEEEC-TTTTCBCTTCCCCCGGGS
T ss_pred cccccccchhhhhhhhhccccceEEEecccccccceeccHHHhhhhhccccccceeEeccc-cccccccCCccccchhhh
Confidence 12333 3578999999999 8999986 57889999999999999953 22211110 11
Q ss_pred --CcccceEEEecC-ccccccCCCCCCcEEEEEEchhhH-hcCCCceeeeeecCCCCcceeeecccccccccccccCCCc
Q 001989 345 --GELGADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYK-RMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNI 420 (985)
Q Consensus 345 --~~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~-~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni 420 (985)
.....-+++.|. |.++.| |-..|++.+.+..+ +.+. + . +. .+. .
T Consensus 223 ~~~~~~~~i~~~s~SK~~~~~----G~R~g~~~~~~~~i~~~~~----------------------~---~-~~-~~~-~ 270 (394)
T d1c7na_ 223 DEQLADKTITFTAPSKTFNIA----GMGMSNIIIKNPDIRERFT----------------------K---S-RD-ATS-G 270 (394)
T ss_dssp CHHHHTTEEEEECSHHHHTCG----GGCCEEEECCCHHHHHHHH----------------------H---H-HH-HTT-C
T ss_pred hcccccceeeccccccccccc----ccccccccccChhhhhhhh----------------------h---h-hh-hcc-c
Confidence 112234666665 888653 22345665544322 2110 0 0 00 001 1
Q ss_pred cchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCC-CeEEcCC--CCcceEEEecC--C--HHHHHHHHH
Q 001989 421 CTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLG-TVEVQGL--PFFDTVKVKCA--D--AHAIASAAY 493 (985)
Q Consensus 421 ~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g-~~~~~~~--~~~~~~~~~~~--~--~~~v~~~L~ 493 (985)
++ .......++.+......+..+++.+...++.+.+.+.|+..+ +++...+ .++ +-++++ + ..++.+.|.
T Consensus 271 ~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~g~~~--~~~~~~~~~~~~~~~~~~Ll 347 (394)
T d1c7na_ 271 MP-FTTLGYKACEICYKECGKWLDGCIKVIDKNQRIVKDFFEVNHPEIKAPLIEGTYL--QWIDFRALKMDHKAMEEFMI 347 (394)
T ss_dssp CC-CCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCTTSBCCCCSBSSE--EEEECGGGCCCHHHHHHHHH
T ss_pred cc-cccccchhhhhhhcchhhhhcccccccchhhhhhhhhhhccccceeecCCCceeE--EEEECCCCCCCHHHHHHHHH
Confidence 11 111222333333334455566666666666667777666542 2443321 222 223433 2 788988887
Q ss_pred Hc-Cceeeee------cCCeEEEEeccCCCHHHHHHHHHHHh
Q 001989 494 KI-EMNLRVV------DSNTVTASFDETTTLEDVDKLFIVFA 528 (985)
Q Consensus 494 ~~-GI~~~~~------~~~~lris~t~~~t~edId~li~aL~ 528 (985)
++ ||.+.+- ..+.+|+|++ .++|+|+..++.|+
T Consensus 348 ~~~gV~v~pG~~Fg~~~~~~iRis~~--~~~e~i~eal~rl~ 387 (394)
T d1c7na_ 348 HKAQIFFDEGYIFGDGGIGFERINLA--APSSVIQESLERLN 387 (394)
T ss_dssp HTTCCCCEEGGGGCGGGTTEEEEECC--SCHHHHHHHHHHHH
T ss_pred HhCCEEEEcchhhCCCCCCEEEEEEe--CCHHHHHHHHHHHH
Confidence 65 9976431 2478999986 46788777766665
|
| >d3tata_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Escherichia coli [TaxId: 562]
Probab=99.12 E-value=1.5e-11 Score=138.56 Aligned_cols=133 Identities=14% Similarity=0.124 Sum_probs=101.8
Q ss_pred CCCCEEEEcCCCCcccHHHHHHCCcEEEEEcCCCC--CCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccc--cCHHHH
Q 001989 678 HHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAK--GNINIEELRKAAEANRDNLSTLMVTYP-STHGVYE--EGIDEI 752 (985)
Q Consensus 678 ~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~d~~--g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~--~di~eI 752 (985)
.++|+|+++++.+..+....+..|.+++.+|++.+ +..|.+++.+.+...+++++++++.+| |++|.+- ..+++|
T Consensus 119 ~pgd~Vlv~~P~y~~y~~~~~~~G~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~NPTG~~~s~~~~~~l 198 (397)
T d3tata_ 119 FPESGVWVSDPTWENHVAIFAGAGFEVSTYPWYDEATNGVRFNDLLATLKTLPARSIVLLHPCCHNPTGADLTNDQWDAV 198 (397)
T ss_dssp CSSCCCEECSSCCTTHHHHHHTTTCCCEECCCCCTTTSSCCHHHHHHHHTTCCSSCCCEECSSSCSSSCCCCCHHHHHHH
T ss_pred CCCCcceecccCccccHHHHHHcCCEEEEEecchhhccccchHHHHHHhhhcccccEEEEecCCCCCCCeeCCHHHHHHH
Confidence 47899999999998888889999999999998654 568999988887655567888888888 6799985 368899
Q ss_pred HHHHHHcCCEEEEEccccccccCCCC---C------CccC-CcEEEeCCcccccccCCCCCCceEEEEEccccc
Q 001989 753 CKIIHDNGGQVYMDGANMNAQVGLTS---P------GYIG-ADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLA 816 (985)
Q Consensus 753 ~~la~~~galliVD~a~~~~~~~l~~---p------g~~g-~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~ 816 (985)
.++|++++++++.|.++.. + .+.. + ...+ -=+++.|+.|++++| |.++|++.+.....
T Consensus 199 ~~~a~~~~~~ii~De~Y~~-l-~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~----G~RiG~~~~~~~~~ 266 (397)
T d3tata_ 199 IEILKARELIPFLDIAYQG-F-GAGMEEDAYAIRAIASAGLPALVSNSFSKIFSLY----GERVGGLSVMCEDA 266 (397)
T ss_dssp HHHHHHTTCCCEECBSCTT-S-SSCHHHHHHHHHHHHTTTCCCEECBCCHHHHTBT----TTCCBCCEEECSST
T ss_pred HHHHhhcCeeEEeehhhhh-h-ccCCcccchhhhhhhhcCCceEEEecCccccccc----CccccccccchhHH
Confidence 9999999999999998731 1 1100 0 0111 126778889998765 78999998876554
|
| >d2ay1a_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Paracoccus denitrificans [TaxId: 266]
Probab=99.10 E-value=2.4e-10 Score=128.23 Aligned_cols=182 Identities=13% Similarity=0.074 Sum_probs=117.0
Q ss_pred CCCchhhhhhHHHHHHHHHHHHHHHhCCCc--cceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHH
Q 001989 620 PFAPADQAQGYQEMFNNLGEWLCTITGFDS--FSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATA 697 (985)
Q Consensus 620 p~~p~e~~~G~~~~~~e~~~~la~l~G~~~--~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a 697 (985)
.|.| .+|..++.+.+.+++.+.-+... ..++..+|+++. +..+.+.... .+++.|+++++.++.+...+
T Consensus 64 ~Y~p---~~G~~~lr~aia~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~-----~~gd~V~~p~p~~~~y~~~~ 134 (394)
T d2ay1a_ 64 TYAG---LSGEPEFQKAMGELILGDGLKSETTATLATVGGTGAL-RQALELARMA-----NPDLRVFVSDPTWPNHVSIM 134 (394)
T ss_dssp CCCC---SSCCHHHHHHHHHHHHGGGCCGGGEEEEEEEHHHHHH-HHHHHHHHHH-----CTTCCEEEEESCCHHHHHHH
T ss_pred CCCC---CCCCHHHHHHHHHHHhccccccccccceeccCchHHH-HHHHHHhhhc-----CCceEEEEecccccchHHHH
Confidence 4555 56766655555555544333322 234444444333 2122222221 47889999999887777888
Q ss_pred HHCCcEEEEEcCCC--CCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccc--cCHHHHHHHHHHcCCEEEEEcccccc
Q 001989 698 AMCGMKIVSVGTDA--KGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYE--EGIDEICKIIHDNGGQVYMDGANMNA 772 (985)
Q Consensus 698 ~~~G~~vv~v~~d~--~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~--~di~eI~~la~~~galliVD~a~~~~ 772 (985)
+..|++++.+|... ++..+.+++++......++++++++.+| |++|..- ..+++|+++|++++++++.|.++..
T Consensus 135 ~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p~NPTG~~~s~e~~~~l~~la~~~~~~ii~De~Y~~- 213 (394)
T d2ay1a_ 135 NFMGLPVQTYRYFDAETRGVDFEGMKADLAAAKKGDMVLLHGCCHNPTGANLTLDQWAEIASILEKTGALPLIDLAYQG- 213 (394)
T ss_dssp HHHTCCEEEEECEETTTTEECHHHHHHHHHTCCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEECCTT-
T ss_pred HHcCCEEEEecccchhcccccchhHHHHHhhcccCcEEEEeCCCCCCCCCCCCHHHHHHHHHHhhcceEEEEEeccchh-
Confidence 89999999998743 3566788888777655567788888888 5799985 2589999999999999999998731
Q ss_pred ccCCCCC---------CccCC-cEEEeCCcccccccCCCCCCceEEEEEccccc
Q 001989 773 QVGLTSP---------GYIGA-DVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLA 816 (985)
Q Consensus 773 ~~~l~~p---------g~~g~-Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~ 816 (985)
+ .+... ...+. -++..++.|.++++ |.++|++.+.....
T Consensus 214 l-~~~~~~~~~~~~~~~~~~~~~~~~~s~sk~~~~~----G~R~G~~~~~~~~~ 262 (394)
T d2ay1a_ 214 F-GDGLEEDAAGTRLIASRIPEVLIAASCSKNFGIY----RERTGCLLALCADA 262 (394)
T ss_dssp S-SSCHHHHHHHHHHHHHHCSSEEEEEECTTTTTCG----GGCEEEEEEECSSH
T ss_pred h-cccccccchhhhhhhhhcccccccccccccccCC----cccccchhhchhHH
Confidence 1 11100 01112 24455666877654 78999998876543
|
| >d2a7va1 c.67.1.4 (A:26-488) Serine hydroxymethyltransferase {Human (Homo sapiens), mitochondrial [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Human (Homo sapiens), mitochondrial [TaxId: 9606]
Probab=99.08 E-value=5.3e-10 Score=124.36 Aligned_cols=320 Identities=11% Similarity=0.047 Sum_probs=175.3
Q ss_pred CCcHHHHHHHHhCCccccccCCChhh-HhhhHHHHHHHH----HHHHHHhcCCCCc----ceeeccchHHHHHHHHHHhh
Q 001989 179 HVPPVILRNIMENPAWYTQYTPYQAE-IAQGRLESLLNF----QTMIADLTGLPMS----NASLLDEGTAAAEAMAMCNN 249 (985)
Q Consensus 179 ~~p~~v~~~i~~~~~~~t~~~pyq~e-~sqg~l~~i~e~----q~~ia~L~g~~~~----~~sl~~~~ta~~ea~~~a~~ 249 (985)
++++.+.+. + -+.|...|.-..|. -..|-.+.+.+. ++...+|+|++.+ |+-.++| +.+..|+.+|+
T Consensus 38 ~~S~~v~~a-l-gS~l~nkYaeG~pg~Ryy~G~~~iD~iE~la~~ra~~lF~~~~a~w~vNVqp~SG-s~An~av~~al- 113 (463)
T d2a7va1 38 FCSRAALEA-L-GSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSG-SPANLAVYTAL- 113 (463)
T ss_dssp CCCHHHHHH-H-TSGGGTCCCCC------------CTHHHHHHHHHHHHHTTCCTTTEEEECCCSSH-HHHHHHHHHHH-
T ss_pred cCCHHHHHH-h-cchhcccccCCCCCccccCCchhHHHHHHHHHHHHHHHhCCCchhccCCcccccc-HHHHHHHHHHH-
Confidence 467777533 3 22444555332231 222223333333 4668999999987 6666554 45556667776
Q ss_pred hhcCCCCEEEEcCCCChhHH---H---HHHHhhcCCCeEEEE---------eCchhhhc-c-CCCEeEEEEEcCCCCeee
Q 001989 250 IQKGKKKTFIIASNCHPQTI---D---ICITRADGFDIKVVV---------SDLKDIDY-K-SGDVCGVLVQYPGTEGEV 312 (985)
Q Consensus 250 ~~~~~g~~Vlv~~~~H~s~~---~---~~~~~a~~~gi~v~~---------v~~~~l~~-l-~~~t~~V~v~~pn~~G~v 312 (985)
. ++||+|+.-+..|..-+ . .-+.-.....++... +|++++++ . ..+.++|++-.+.+. ..
T Consensus 114 l--~pgD~Im~l~l~~GGHlshg~~~~~~~~~~~g~~~~~~~Y~~d~~~~~IDyd~~~~~a~~~kPklIi~G~S~y~-r~ 190 (463)
T d2a7va1 114 L--QPHDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLNPKTGLIDYNQLALTARLFRPRLIIAGTSAYA-RL 190 (463)
T ss_dssp C--CSCEECCC-------------------------------CCBCTTTCSBCHHHHHHHHHHHCCSEEEECCSSCC-SC
T ss_pred c--CCCceEEeeccCcCcccccccccccccccceeeEeeeeeeeccCCCCcCcHHHHHHHHhhcCCceEEecccccc-cc
Confidence 2 38999986654442211 0 000000111112222 34455554 2 234567776654443 44
Q ss_pred ccHHHHHHHHHhCCcEEEEE-ecCcc---ccCCCCCCcccceEEEecC-ccccccCCCCCCcEEEEEEchhhHhcCCCce
Q 001989 313 LDYGDFIKNAHANGVKVVMA-TDLLA---LTILKPPGELGADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRI 387 (985)
Q Consensus 313 ~di~~I~~~a~~~galliV~-a~~~~---lg~l~~~~~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~ 387 (985)
.|++++.++|++.|+++++| +|..+ -|+..+|-+. ||||.++. |+|.+| ..|++.++++.....|.
T Consensus 191 ~d~~~~reIad~vga~l~~D~aH~aGLIA~g~~~sP~~~-aDvvt~tTHKTlrGP------rgGiIl~~~~~~~~~~~-- 261 (463)
T d2a7va1 191 IDYARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFKH-ADIVTTTTHKTLRGA------RSGLIFYRKGVKAVDPK-- 261 (463)
T ss_dssp CCHHHHHHHHHHTTCEEEEECGGGHHHHHTTSSCCGGGT-CSEEEEESSGGGCSC------SCEEEEEECSEEEEETT--
T ss_pred cCHHHHHHHhhcccceEEechhhhhHHhhhhhhcChhhh-hhhhhchhhhhhcCC------CceEEEEcccccccccc--
Confidence 59999999999999999995 44433 3566777765 79999999 888654 55888888753221110
Q ss_pred eeeeecCCCCcceeeecccccccccc--cccCCCccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCC
Q 001989 388 VGVSIDSSGKPALRVAMQTREQHIRR--DKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLG 465 (985)
Q Consensus 388 vG~t~d~~g~~~~~l~l~tre~~irr--e~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g 465 (985)
+.......+ ++.+.+ ..|..--+-+..+.|.+.++ ........++-+++..++|+.|++.|.+.|
T Consensus 262 --------~~~~~~~~~---~~~i~~avFPg~qggph~h~iAa~Ava~--~ea~~~~fk~Ya~qVv~NAk~La~~L~~~G 328 (463)
T d2a7va1 262 --------TGREIPYTF---EDRINFAVFPSLQGGPHNHAIAAVAVAL--KQACTPMFREYSLQVLKNARAMADALLERG 328 (463)
T ss_dssp --------TEEEEECCC---HHHHHHHHTTTTCCSCCHHHHHHHHHHH--HHHHSHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred --------cCccchhHH---HHHhhhhcCcccchhhhhhhHHHHHHHH--HHhcCchHHHHHHHHHHHHHHHHHHHHhCC
Confidence 000000000 011111 11111111123344444443 222233568899999999999999999998
Q ss_pred CeEEcC-CCCcceEEEecCC----HHHHHHHHHHcCceeee---------ecCCeEEEEeccCCC----HHHHHHHHHHH
Q 001989 466 TVEVQG-LPFFDTVKVKCAD----AHAIASAAYKIEMNLRV---------VDSNTVTASFDETTT----LEDVDKLFIVF 527 (985)
Q Consensus 466 ~~~~~~-~~~~~~~~~~~~~----~~~v~~~L~~~GI~~~~---------~~~~~lris~t~~~t----~edId~li~aL 527 (985)
++++. ...-+.+.++... ..++.+.|.+.||.+.. ..++.||+...+.+| ++|+.++.+.+
T Consensus 329 -~~vv~ggTdnHlvlvdl~~~~~~G~~ae~~Le~~gI~~Nkn~iP~D~~~~~~sGiRiGT~a~TtrG~~e~dm~~iA~~I 407 (463)
T d2a7va1 329 -YSLVSGGTDNHLVLVDLRPKGLDGARAERVLELVSITANKNTCPGDRSAITPGGLRLGAPALTSRQFREDDFRRVVDFI 407 (463)
T ss_dssp -CEEGGGSCSSSEEEEECTTTTCCHHHHHHHHHHTTEECEEECCTTCCCSSSCSEEEEESHHHHHTTCCHHHHHHHHHHH
T ss_pred -CeeecCCCCCceeeeeccccCCCHHHHHHHHHhccCccCCccCCCCCCCCCCCceEeCCHHHHhCCCCHHHHHHHHHHH
Confidence 99984 3444566677532 78888899999997642 235679999877554 57887777666
Q ss_pred h
Q 001989 528 A 528 (985)
Q Consensus 528 ~ 528 (985)
.
T Consensus 408 ~ 408 (463)
T d2a7va1 408 D 408 (463)
T ss_dssp H
T ss_pred H
Confidence 5
|
| >d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase) {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tryptophan indol-lyase (tryptophanase) species: Proteus vulgaris [TaxId: 585]
Probab=99.01 E-value=7.1e-09 Score=118.63 Aligned_cols=281 Identities=12% Similarity=0.062 Sum_probs=155.0
Q ss_pred HHHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhh-hh--c-CCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEe
Q 001989 211 ESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNN-IQ--K-GKKKTFIIASNCHPQTIDICITRADGFDIKVVVS 286 (985)
Q Consensus 211 ~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~-~~--~-~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v 286 (985)
..+.|+++.+++++|++. +.++++||.+.++++.+++ .. . ..+..++.+..-|.++...... .|...+.+
T Consensus 75 ~~~~~le~~~a~l~g~~~--~~~~~sGt~A~~~a~~~~~~~g~~~~~~~~~~i~~~~h~~t~~~~~~~----~g~~~~~~ 148 (465)
T d1ax4a_ 75 RNYYDLKDKAKELFNYDY--IIPAHQGRGAENILFPVLLKYKQKEGKAKNPVFISNFHFDTTAAHVEL----NGCKAINI 148 (465)
T ss_dssp HHHHHHHHHHHHHHCCCE--EEEESSHHHHHHHHHHHHHHHHHHTTCCSSCEEEESSCCHHHHHHHHH----TTCEEEEC
T ss_pred hHHHHHHHHHHHHHCCCE--EEECCCcHHHHHHHHHHHHHHHHhcCCCCCeEEeccchhhhhHHHHHH----cCCeeecc
Confidence 345678899999999986 6778999988888775543 11 1 1233456666666766665532 35555443
Q ss_pred ------------------Cchhhhc-c---C-CCEeEEEEEcCCCC--eee---ccHHHHHHHHHhCCcEEEEE-ecCcc
Q 001989 287 ------------------DLKDIDY-K---S-GDVCGVLVQYPGTE--GEV---LDYGDFIKNAHANGVKVVMA-TDLLA 337 (985)
Q Consensus 287 ------------------~~~~l~~-l---~-~~t~~V~v~~pn~~--G~v---~di~~I~~~a~~~galliV~-a~~~~ 337 (985)
|++++++ + + +.+++++++.++.. |.+ +++++|.++||++|+++++| ++...
T Consensus 149 ~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~~~~~~g~~l~~D~~~~~~ 228 (465)
T d1ax4a_ 149 VTEKAFDSETYDDWKGDFDIKKLKENIAQHGADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSARFCE 228 (465)
T ss_dssp BCGGGGCTTSCCTTTTCBCHHHHHHHHHHHCGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEECTTHHH
T ss_pred cccccCCCCCCCCccCccCHHHHHHHHHhhccccccceeeccccccCceecCCHHHHHHHHHHHHHcCCEEEEECcchhh
Confidence 2234554 3 2 34666777766443 333 46899999999999999995 32211
Q ss_pred c---cCCCCCCccc-------------ceEEEecCccccccCCCCCCcEEEEEEchhhH--hcCCCceeeeeecCCCCcc
Q 001989 338 L---TILKPPGELG-------------ADIVVGSAQRFGVPMGYGGPHAAFLATSQEYK--RMMPGRIVGVSIDSSGKPA 399 (985)
Q Consensus 338 l---g~l~~~~~~G-------------aDi~v~s~k~lg~P~~~GGP~~G~l~~~~~~~--~~lp~~~vG~t~d~~g~~~ 399 (985)
. +.-..++.+| +|++.++.++ ++|||+.|++++++... +....
T Consensus 229 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~d~~s~s~~k-----~~~~~~~g~l~~~~~~~~~~~~~~-------------- 289 (465)
T d1ax4a_ 229 NAYFIKARDPKYKNATIKEVIFDMYKYADALTMSAKK-----DPLLNIGGLVAIRDNEEIFTLARQ-------------- 289 (465)
T ss_dssp HHHHHHHHCGGGTTCCHHHHHHHHGGGCSEEEEETTS-----TTCCSSCEEEEESSCHHHHHHHHH--------------
T ss_pred hhcccccccccccccchhhhccccccccceeEeeccc-----CcccccceeEeecchHHHHHhhhc--------------
Confidence 0 0000111122 5777777622 23556678888875321 11100
Q ss_pred eeeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCCCcceEE
Q 001989 400 LRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDTVK 479 (985)
Q Consensus 400 ~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~~~~~~~ 479 (985)
..+.....+++ ..........+++.+.... .++..++..++++||+++|+++| +.++.+...+.+.
T Consensus 290 ---------~~~~~~~~~~~-~~~~~~~~~a~~~~~~e~~---~~~~~~~~~~~~~~l~~~L~~~g-~~~v~~~~~~~~~ 355 (465)
T d1ax4a_ 290 ---------RCVPMEGFVTY-GGLAGRDMAAMVQGLEEGT---EEEYLHYRIGQVKYLGDRLREAG-IPIQYPTGGHAVF 355 (465)
T ss_dssp ---------HHHHHTCSTTT-TTCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHHHHHTT-CCBCSSCCSSEEE
T ss_pred ---------cccccccCCCc-chhhHHHHHHHhhhhHHhh---hHHHHHHHHHHHHHHHHHHHhhc-CccccCCCcceee
Confidence 00000101111 0111111111222111111 13445556678899999999987 7766433222222
Q ss_pred Eec-------CC-----HHHHHHHHHHcCceeeee-----------------cCCeEEEEe-ccCCCHHHHHHHHHHHhC
Q 001989 480 VKC-------AD-----AHAIASAAYKIEMNLRVV-----------------DSNTVTASF-DETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 480 ~~~-------~~-----~~~v~~~L~~~GI~~~~~-----------------~~~~lris~-t~~~t~edId~li~aL~~ 529 (985)
++. .. ...+.+.|.+.||..... ..+.+|+++ ....|+||||+++++|.+
T Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~GI~~~~~~~~~~~~~~~~g~~~~~~~~~vRlalP~~~~T~eeiD~vv~~l~~ 435 (465)
T d1ax4a_ 356 VDCKKLVPQIPGDQFPAQAVINALYLESGVRAVEIGSFLLGRDPATGEQKHADMEFMRLTIARRVYTNDHMDYIADALIG 435 (465)
T ss_dssp EESTTTCTTSCGGGCHHHHHHHHHHHHHCEECEEESHHHHCBCTTTCSBCCCSCCEEEEECCTTSSCHHHHHHHHHHHHT
T ss_pred eehhhhcCCCccccchhHHHHHHHHHhcCceeccccccccccccccCCccCCCCCceEEeCCCCCCCHHHHHHHHHHHHH
Confidence 221 11 334555566779854210 135799985 456799999999999986
Q ss_pred C
Q 001989 530 G 530 (985)
Q Consensus 530 ~ 530 (985)
-
T Consensus 436 v 436 (465)
T d1ax4a_ 436 L 436 (465)
T ss_dssp T
T ss_pred H
Confidence 4
|
| >d1rv3a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=98.98 E-value=2e-09 Score=119.97 Aligned_cols=284 Identities=13% Similarity=0.070 Sum_probs=166.6
Q ss_pred HHHHHhcCCCC----cceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCC---hhHHHHHHH---hhcCCCeEEEE--
Q 001989 218 TMIADLTGLPM----SNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCH---PQTIDICIT---RADGFDIKVVV-- 285 (985)
Q Consensus 218 ~~ia~L~g~~~----~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H---~s~~~~~~~---~a~~~gi~v~~-- 285 (985)
+...+|+|++. +|+-.++ |+.+..++.+|+. ++||+|+.-+..| -+--..... -......+...
T Consensus 84 ~ra~~lF~~~~~~~~anVqp~S-Gs~An~av~~all---~pgD~im~~~l~~GGHlshg~~~~~~~~~~~~~~~~~~~y~ 159 (470)
T d1rv3a_ 84 KRALQAYGLDPQCWGVNVQPYS-GSPANFAVYTALV---EPHGRIMGLDLPDGGHLTHGFMTDKKKISATSIFFESMAYK 159 (470)
T ss_dssp HHHHHHTTCCTTTEEEECCCSS-HHHHHHHHHHHHT---CTTCEEEEECGGGTCCGGGCCBCSSCBCSHHHHHSEEEEEC
T ss_pred HHHHHHhCCChhhccccccccC-CccHHHHHHHHhc---CCCCeEeeeccccCCcccccccccCCCcccccceeEeeEEE
Confidence 55599999973 4554444 4555566667652 3999999866443 221100000 00001123333
Q ss_pred -------eCchhhhc--cCCCEeEEEEEcCCCCeeeccHHHHHHHHHhCCcEEEEE-ecCcc---ccCCCCCCcccceEE
Q 001989 286 -------SDLKDIDY--KSGDVCGVLVQYPGTEGEVLDYGDFIKNAHANGVKVVMA-TDLLA---LTILKPPGELGADIV 352 (985)
Q Consensus 286 -------v~~~~l~~--l~~~t~~V~v~~pn~~G~v~di~~I~~~a~~~galliV~-a~~~~---lg~l~~~~~~GaDi~ 352 (985)
+|+|++++ ...+.++|++-.+.+. ...|++++.++|++.|+++++| +|..+ -|++.+|-+. ||||
T Consensus 160 v~~~~~~IDyd~l~~~a~~~kPklIi~G~S~y~-r~~d~~~~reIad~vga~l~~D~aH~aGLIA~g~~~sPl~~-aDvv 237 (470)
T d1rv3a_ 160 VNPDTGYIDYDRLEENARLFHPKLIIAGTSCYS-RNLDYGRLRKIADENGAYLMADMAHISGLVVAGVVPSPFEH-CHVV 237 (470)
T ss_dssp BCTTTCSBCHHHHHHHHHHHCCSEEEECCSSCC-SCCCHHHHHHHHHHTTCEEEEECTTTHHHHHHTSSCCGGGT-CSEE
T ss_pred EecccCcccHHHHHHHHHhhCcceEeechhhcc-ccCCHHHHHHHHhccCCeEEecchhhhhhccccccCChhhe-eeee
Confidence 34455554 2234567777655443 4459999999999999999995 45433 3567778765 6999
Q ss_pred EecC-ccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccc--cccCCCccchhHHHHH
Q 001989 353 VGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRR--DKATSNICTAQALLAN 429 (985)
Q Consensus 353 v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irr--e~atsni~t~~~l~a~ 429 (985)
.++. |+|.+ |..|++.+++++...-|. . |+. ...++ ++.+.+ ..|+.--+-+..+.|.
T Consensus 238 t~tTHKtlrG------PrgGiI~~~~~~~~~~~~--~-------~~~-~~~~~---~~~i~~avFPg~qggph~~~IAa~ 298 (470)
T d1rv3a_ 238 TTTTHKTLRG------CRAGMIFYRRGVRSVDPK--T-------GKE-ILYNL---ESLINSAVFPGLQGGPHNHAIAGV 298 (470)
T ss_dssp EEESSGGGCC------CSCEEEEEECSBCC----------------C-CBCCH---HHHHHHHHTTTTCCSCCHHHHHHH
T ss_pred eeehhhhccC------CcceEEEEcccccccccc--c-------cch-hHHHH---HHHHhhhcCccccccchhhHHHHH
Confidence 9999 88865 455888887653221110 0 000 00000 011111 1222211122344444
Q ss_pred HHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcC-CCCcceEEEecC--C--HHHHHHHHHHcCceeee---
Q 001989 430 MAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQG-LPFFDTVKVKCA--D--AHAIASAAYKIEMNLRV--- 501 (985)
Q Consensus 430 ~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~-~~~~~~~~~~~~--~--~~~v~~~L~~~GI~~~~--- 501 (985)
+.++ ...+-+ -.++-+++..++|+.|++.|.+.| ++++. ...-+.+.++.. + +.++.+.|.+.||.+..
T Consensus 299 Ava~-~ea~~~-~fk~Ya~qvv~NAk~La~~L~~~G-~~v~~ggTdnHlvlvdl~~~g~~g~~ae~~Le~~gI~~Nkn~i 375 (470)
T d1rv3a_ 299 AVAL-KQAMTP-EFKEYQRQVVANCRALSAALVELG-YKIVTGGSDNHLILVDLRSKGTDGGRAEKVLEACSIACNKNTC 375 (470)
T ss_dssp HHHH-HHHTSH-HHHHHHHHHHHHHHHHHHHHHHTT-CEEGGGSCSSSEEEEEGGGGTCCHHHHHHHHHHTTEECEEECC
T ss_pred HHHH-HHhcCh-HHHHHHHHHHHHHHHHHHHHHhCC-ceeccCCCCCceEEEeecccCCcHHHHHHHHHHcCcEECCCcC
Confidence 4333 222333 458899999999999999999998 99984 344455666653 2 77788889889997632
Q ss_pred ------ecCCeEEEEeccCC----CHHHHHHHHHHHhC
Q 001989 502 ------VDSNTVTASFDETT----TLEDVDKLFIVFAG 529 (985)
Q Consensus 502 ------~~~~~lris~t~~~----t~edId~li~aL~~ 529 (985)
..++.+|+...+.+ .++|+.++.+.+..
T Consensus 376 P~D~~~~~~sGiRiGT~alTtrG~~e~dm~~iA~~I~~ 413 (470)
T d1rv3a_ 376 PGDKSALRPSGLRLGTPALTSRGLLEKDFQKVAHFIHR 413 (470)
T ss_dssp SSCSCTTSCCEEEEECHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCeeEecCHHHHhCCCCHHHHHHHHHHHHH
Confidence 22577999987754 45888777776653
|
| >d1c7ga_ c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 549]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tyrosine phenol-lyase species: Erwinia herbicola [TaxId: 549]
Probab=98.98 E-value=1.4e-08 Score=115.62 Aligned_cols=274 Identities=12% Similarity=0.042 Sum_probs=152.3
Q ss_pred HHHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEe----
Q 001989 211 ESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVS---- 286 (985)
Q Consensus 211 ~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v---- 286 (985)
..+.++|+.+|+++|++. +.++++||++...++.++. ++||+|+.... +.+....+.. .|...+.+
T Consensus 75 pt~~~lE~~~a~l~G~e~--al~~~SGt~An~~a~~~l~---~~Gd~Vi~~~~-f~~~~~~i~~----~g~~~~~~~~~~ 144 (456)
T d1c7ga_ 75 ENFYHLEKTVKELFGFKH--IVPTHQGRGAENLLSQLAI---KPGQYVAGNMY-FTTTRFHQEK----NGATFVDIVRDE 144 (456)
T ss_dssp HHHHHHHHHHHHHHCCSE--EEEESSHHHHHHHHHHHHC---CTTEEEEESSC-CHHHHHHHHH----TTEEEEECBCGG
T ss_pred chHHHHHHHHHHHhCCCe--EEECCCHHHHHHHHHHHhc---CCCCeEecCcc-hHHHHHHHHH----cCceeeeccccc
Confidence 345668899999999997 6778999988776666552 48888887665 3333333322 35555433
Q ss_pred --------------Cchhhhc-cC----CCEeEEEEEcC-CCCe-ee---ccHHHHHHHHHhCCcEEEEEecCccccC--
Q 001989 287 --------------DLKDIDY-KS----GDVCGVLVQYP-GTEG-EV---LDYGDFIKNAHANGVKVVMATDLLALTI-- 340 (985)
Q Consensus 287 --------------~~~~l~~-l~----~~t~~V~v~~p-n~~G-~v---~di~~I~~~a~~~galliV~a~~~~lg~-- 340 (985)
|+++|++ +. +.++.+++.+| |..| .+ +++++|.++|+++|+++++|. ....+.
T Consensus 145 ~~~~~~~~~~~~~~d~~~le~~I~~~~~~~~~~i~~e~~~n~~gG~~~~~~~l~~i~~~a~~~~~~~~~D~-a~~~~~a~ 223 (456)
T d1c7ga_ 145 AHDASLNLPFKGDIDLNKLATLIKEKGAENIAYICLAVTVNLAGGQPVSMANMRAVHEMASTYGIKIFYDA-TRCVENAY 223 (456)
T ss_dssp GGCTTCCCSCTTCBCHHHHHHHHHHHCGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEEC-TTHHHHHH
T ss_pred cccccccCCccccCCHHHHHHHhhhcCCccceeEEeeecccccccceecHHHHHHHHHHHHHcCCEEEEEc-chhhcchh
Confidence 2234554 32 45678888887 5544 43 578999999999999999953 211110
Q ss_pred ------CC----CCCc------ccceEEEecC-ccccccCCCCCCcEEEEEEchh-hHhcCCCceeeeeecCCCCcceee
Q 001989 341 ------LK----PPGE------LGADIVVGSA-QRFGVPMGYGGPHAAFLATSQE-YKRMMPGRIVGVSIDSSGKPALRV 402 (985)
Q Consensus 341 ------l~----~~~~------~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~-~~~~lp~~~vG~t~d~~g~~~~~l 402 (985)
.. ..++ --+|++.+++ |.++. |..|+++++++ +.+++-.+.+. ..+..
T Consensus 224 ~~~~~~~~~~~~~i~~i~~~~~~~ad~~s~s~~K~~~~------~~GG~i~~~~~~l~~~~r~~~~~----~~g~~---- 289 (456)
T d1c7ga_ 224 FIKEQEAGYENVSIKDIVHEMFSYADGCTMSGKKDCLV------NIGGFLCMNDEEMFSAAKELVVV----YEGMP---- 289 (456)
T ss_dssp HHHHHSTTCTTSCHHHHHHHHHTTCSEEEEETTTTTCC------SSCEEEEESCHHHHHHHHHHHHH----HTCCT----
T ss_pred hhcccccccCCCChhhhccccccccccEEEeccccccc------cceeEEEcCCHHHHHHHHHhccc----cCCCc----
Confidence 00 0011 1279999998 55543 34478887753 33332100000 00000
Q ss_pred ecccccccccccccCCCccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCCCcceEEEe-
Q 001989 403 AMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDTVKVK- 481 (985)
Q Consensus 403 ~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~~~~~~~~~- 481 (985)
+..........+++..+ ....+. +..++-.++++||.++|++.| +.++.++..+.+-++
T Consensus 290 --------------~~g~~~~~~~~a~a~~l-~e~~~~----~~l~~r~~~~~~L~e~L~~~g-~~vv~p~g~~~v~vda 349 (456)
T d1c7ga_ 290 --------------SYGGLAGRDMEAMAIGL-REAMQY----EYIEHRVKQVRYLGDKLREAG-VPIVEPTGGHAVFLDA 349 (456)
T ss_dssp --------------TTTTCCHHHHHHHHHHH-HHHTCH----HHHHHHHHHHHHHHHHHHHTT-CCBCSSCCSSEEEEEH
T ss_pred --------------ccchhhHHHHHHHHHHH-HHhcCH----HHHHHHHHHHHHHHHHHHhcc-CCcccCCCCcceeEec
Confidence 00000001121221111 122222 233344677899999999997 666543222222221
Q ss_pred ------cCC----HHHHHHHH-HHcCceeeee-----------------cCCeEEEEecc-CCCHHHHHHHHHHHhC
Q 001989 482 ------CAD----AHAIASAA-YKIEMNLRVV-----------------DSNTVTASFDE-TTTLEDVDKLFIVFAG 529 (985)
Q Consensus 482 ------~~~----~~~v~~~L-~~~GI~~~~~-----------------~~~~lris~t~-~~t~edId~li~aL~~ 529 (985)
.+. +.++..+| .+.||..... ..+.+|+++.. ..|++|||.++++|.+
T Consensus 350 ~~~~~~i~~~~~~~~~~~~~l~~~~GIr~~~~g~~~~~~~~~~g~~~~~~~e~vRLaip~~~~T~e~iD~Vae~i~~ 426 (456)
T d1c7ga_ 350 RRFCPHLTQDQFPAQSLAASIYMETGVRSMERGIVSAGRSKETGENHRPKLETVRLTIPRRVYTYAHMDVVADGIIK 426 (456)
T ss_dssp HHHCTTSCGGGCHHHHHHHHHHHHHSEECEEESHHHHCBCSSSCCBCCCSCCEEEEECCTTSCCHHHHHHHHHHHHH
T ss_pred hhhccCCCcccccHHHHHHHHHHHhCeeecccCccccccCCcccCccCCccceEEEecCcccCCHHHHHHHHHHHHH
Confidence 111 44444444 4668853110 12469999864 4599999999999874
|
| >d2hoxa1 c.67.1.1 (A:1-425) Alliinase {Garlic (Allium sativum) [TaxId: 4682]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Alliinase species: Garlic (Allium sativum) [TaxId: 4682]
Probab=98.96 E-value=2.4e-10 Score=128.96 Aligned_cols=243 Identities=9% Similarity=-0.041 Sum_probs=140.0
Q ss_pred CCCCEEEEcCCCCcccHHHHHHCCcEEEEEcCCCCCCCCHHHHHHHHHhcCCCEEEEEEEcCC-CccccccCHHHHHHHH
Q 001989 678 HHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPS-THGVYEEGIDEICKII 756 (985)
Q Consensus 678 ~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~pn-~~G~i~~di~eI~~la 756 (985)
.++++||++.+++..+...+++.|.+...++. |.+.++++++ ++++++++++|| ++|.+..++
T Consensus 153 ~pg~~Vv~~~P~y~~Y~~~~~~~~~~~~~~~~------D~~~~~~~~~---~~~~ii~l~sPnNPtG~l~~~v------- 216 (425)
T d2hoxa1 153 APESKVVAHAPFYPVFREQTKYFDKKGYVWAG------NAANYVNVSN---PEQYIEMVTSPNNPEGLLRHAV------- 216 (425)
T ss_dssp SCCEEEEECSSCCHHHHHHHHHSCBTTEEEEE------EGGGGTTCSC---GGGEEEEEESSCTTTCCCCCCS-------
T ss_pred CCCCEEEEecCccccHHHHHHHcCCCCCccCC------CHHHHHhhCC---CCceEEEEECCCCCCcchhhhh-------
Confidence 36789999999888887778888776555553 6777777666 789999999995 799986322
Q ss_pred HHcCCEEEEEccccccccCCCCCCccCCcEEEeCCcccccccCCCCCCceEEEEEccc-ccCcCCCCccccCCCCCCCCC
Q 001989 757 HDNGGQVYMDGANMNAQVGLTSPGYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKH-LAPFLPSHPVVSTGGIPAPEK 835 (985)
Q Consensus 757 ~~~galliVD~a~~~~~~~l~~pg~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~-l~~~lp~~~~g~~~~~~~~~~ 835 (985)
.+|+.+|+|.++..... ...+....-+|++.|+.|+|++| |.++|+++++++ +.+.+.... .
T Consensus 217 -~~~~~~I~DEaY~~~~f-~~~~~~~~~~Ivl~S~SK~fgla----GlRiGw~i~~~~~i~~~~~~~~-~---------- 279 (425)
T d2hoxa1 217 -IKGCKSIYDMVYYWPHY-TPIKYKADEDILLFTMSKFTGHS----GSRFGWALIKDESVYNNLLNYM-T---------- 279 (425)
T ss_dssp -STTCEEEEECTTCSTTT-SCCCSCBCCSEEEEEHHHHTSCG----GGCCEEEEECCHHHHHHHHHHH-H----------
T ss_pred -hhCCEEEEeccccCccc-cchhhhcCCeEEEEeCHHhccCc----chheeeEEeCCHHHHHHHHHhh-c----------
Confidence 25899999998732111 11233445689999999998764 899999887753 333221100 0
Q ss_pred CCCCCCCCCcchhhhHHHHHHHHHHHHh----------cHHHHHHHHHHHHHHHHHHHHHhhc-c-CCeee-cCC-----
Q 001989 836 SQPLGTIAAAPWGSALILPISYTYIAMM----------GSKGLTEASKIAILNANYMAKRLEK-H-YPILF-RGV----- 897 (985)
Q Consensus 836 ~~~~~~i~s~~~g~~~~~~~a~a~l~~l----------g~eGl~~~~~~~~~~a~~l~~~L~~-g-~~l~~-~~~----- 897 (985)
..+.++++ ..+. ++.+.+... ..+-+....+...++.+++.+.|++ + +.+.. +.+
T Consensus 280 -~~~~~vs~--~~Q~----aa~~aL~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~~~~~l~~~p~~~~~~f 352 (425)
T d2hoxa1 280 -KNTEGTPR--ETQL----RSLKVLKEVVAMVKTQKGTMRDLNTFGFKKLRERWVNITALLDQSDRFSYQELPQSEYCNY 352 (425)
T ss_dssp -HHTSSCCH--HHHH----HHHHHHHHHHHHHHHHTTSTTSHHHHHHHHHHHHHHHHHHHHTTSSSEECCCCCSCEEETT
T ss_pred -cCcccCCH--HHHH----HHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceeeccCCccceee
Confidence 00112211 1121 111222211 1112222333455566777777765 2 11100 000
Q ss_pred ------CCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCC-CCCCC-CCEEEEeccCCCCHHHHHHHHccCChhH
Q 001989 898 ------NGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPT-MSWPV-PGTLMIEPTESESKSWTGIVMLSSPSEK 969 (985)
Q Consensus 898 ------~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~-~~~p~-~~~lris~t~~~t~eeId~~~~~~~l~~ 969 (985)
..+.+ ..+++. ..+.+++.+.|.++||.+.. ..|+. ++.+||++. .++|++|+ +++.|++
T Consensus 353 ~~~~~~~~~~f--~wl~~~------~~~~~~~~~lL~e~gI~v~pGs~FG~~~~yvRisl~--~~~e~ld~--~l~rL~~ 420 (425)
T d2hoxa1 353 FRRMRPPSPSY--AWVKCE------WEEDKDCYQTFQNGRINTQNGVGFEASSRYVRLSLI--KTQDDFDQ--LMYYLKD 420 (425)
T ss_dssp TTEEECCCCSE--EEEEEC------SGGGCSHHHHHHHTTEECEEGGGGTSCTTEEEEECS--SCHHHHHH--HHHHHHH
T ss_pred eeeccCCCcce--eeeeCC------CChHHHHHHHHHhCCEEEEechhcCCCCCEEEEEec--CCHHHHHH--HHHHHHH
Confidence 00111 123332 11223456668889998753 33443 589999973 57888899 7777877
Q ss_pred HHH
Q 001989 970 KLH 972 (985)
Q Consensus 970 ~~~ 972 (985)
+++
T Consensus 421 ~v~ 423 (425)
T d2hoxa1 421 MVK 423 (425)
T ss_dssp HHT
T ss_pred HHh
Confidence 764
|
| >d2byla1 c.67.1.4 (A:36-439) Ornithine aminotransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Ornithine aminotransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.95 E-value=5e-08 Score=109.23 Aligned_cols=274 Identities=13% Similarity=0.108 Sum_probs=163.9
Q ss_pred HHHHHHHHhcCCCCcceeeccchHHHHHHHH-HHhhhh------cCCCCEEE-EcCCCChhHHHHHHHh--------hcC
Q 001989 215 NFQTMIADLTGLPMSNASLLDEGTAAAEAMA-MCNNIQ------KGKKKTFI-IASNCHPQTIDICITR--------ADG 278 (985)
Q Consensus 215 e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~-~a~~~~------~~~g~~Vl-v~~~~H~s~~~~~~~~--------a~~ 278 (985)
++.+.++++.+.+. +.+..+||.+.|+++ +|+.+. ...+.+|+ ...+-|......+..- ...
T Consensus 87 ~~~~~~~~~~~~~~--v~~~~sGseA~e~Aik~ar~~~~~~~~~~~~~~~i~~~~~~~hg~t~~~~~~~~~~~~~~~~~p 164 (404)
T d2byla1 87 EYEEYITKLFNYHK--VLPMNTGVEAGETACKLARKWGYTVKGIQKYKAKIVFAAGNFWGRTLSAISSSTDPTSYDGFGP 164 (404)
T ss_dssp HHHHHHHHHHTCSE--EEEESSHHHHHHHHHHHHHHHHHHTTCCCTTCCEEEEETTCCCCCSHHHHTTCCCHHHHTTSCS
T ss_pred HHHHhhhhcccccc--cccccCccccchhHHHHHHHHhhhccccccccccccccCCCccccccceeccCCCcccccCCCC
Confidence 34567888888865 667788998888777 455432 11334555 5556775544443210 001
Q ss_pred CCeEEEEeCc---hhhhc-c-CCCEeEEEEEcC-CCCeeecc----HHHHHHHHHhCCcEEEEEecCc-cccCCCCC---
Q 001989 279 FDIKVVVSDL---KDIDY-K-SGDVCGVLVQYP-GTEGEVLD----YGDFIKNAHANGVKVVMATDLL-ALTILKPP--- 344 (985)
Q Consensus 279 ~gi~v~~v~~---~~l~~-l-~~~t~~V~v~~p-n~~G~v~d----i~~I~~~a~~~galliV~a~~~-~lg~l~~~--- 344 (985)
..-.+..++. +++++ + ++++++|++.-- ..-|.+.+ +++|.++|+++|+++|+| +.. ++|-....
T Consensus 165 ~~~~~~~~p~~d~~~l~~~l~~~~iAaviiEPi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~D-EV~tGfgR~G~~~a~ 243 (404)
T d2byla1 165 FMPGFDIIPYNDLPALERALQDPNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIAD-EIQTGLARTGRWLAV 243 (404)
T ss_dssp CCTTEEEECTTCHHHHHHHHTSTTEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEE-CTTTTTTTTSSSSGG
T ss_pred CCCCeeEecccCHHHHHHhcCCCCeEEEEECCccCCCCCccCCHHHHHHHHHHHHhcCeEEEee-ccccccccccccchh
Confidence 1122344454 34555 4 567888887532 45676664 899999999999999995 332 33322211
Q ss_pred Cccc--ceEEEecCccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccc
Q 001989 345 GELG--ADIVVGSAQRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICT 422 (985)
Q Consensus 345 ~~~G--aDi~v~s~k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t 422 (985)
..+| .||++ -+|.++ .|+.-+|.+.+++++.+.+.+...+ +|.+
T Consensus 244 ~~~gv~PDi~~-~gK~l~----gG~~p~~av~~~~~i~~~~~~~~~~--------------------------~T~~--- 289 (404)
T d2byla1 244 DYENVRPDIVL-LGKALS----GGLYPVSAVLCDDDIMLTIKPGEHF--------------------------STYG--- 289 (404)
T ss_dssp GGGTCCCSEEE-ECGGGG----TTSSCCEEEEECHHHHTTSCTTSSC--------------------------CSST---
T ss_pred hhcCCCCCEEE-ECchhh----CCCccceeeeechhhhhccCCCCCC--------------------------cCCC---
Confidence 2345 39874 347775 2434456778888887766432111 1111
Q ss_pred hhHHHHHHHHH-HHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCC--eE-EcCCCCcceEEEecC-C--HHHHHHHHHHc
Q 001989 423 AQALLANMAAM-YAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGT--VE-VQGLPFFDTVKVKCA-D--AHAIASAAYKI 495 (985)
Q Consensus 423 ~~~l~a~~aa~-~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~--~~-~~~~~~~~~~~~~~~-~--~~~v~~~L~~~ 495 (985)
..++ +.+|++ .+..+..+. +.++..++..++.+.|+++.. +. +-+.-.+..+.+..+ . +.++.++|.++
T Consensus 290 gnpl-~~aaa~a~L~~i~~~~---l~~~~~~~g~~l~~~l~~l~~~~i~~vRg~Gl~~~i~~~~~~~~~~~~~~~~l~~~ 365 (404)
T d2byla1 290 GNPL-GCRVAIAALEVLEEEN---LAENADKLGIILRNELMKLPSDVVTAVRGKGLLNAIVIKETKDWDAWKVCLRLRDN 365 (404)
T ss_dssp TCHH-HHHHHHHHHHHHHHTT---HHHHHHHHHHHHHHHHHTSCTTTEEEEEEETTEEEEEECCCSSCCHHHHHHHHHHT
T ss_pred cCHH-HHHHHHHHHHHHHhcC---chhhhhHhhHHHHHHHHhhccccceeeeecccEEEEEEecCCchhHHHHHHHHHhC
Confidence 0122 122222 245554443 556667778899999887621 11 111111222444332 2 77899999999
Q ss_pred CceeeeecCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 496 EMNLRVVDSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 496 GI~~~~~~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
|+.+.....+.||+++....|++|||+++++|.+
T Consensus 366 Gvl~~~~~~~~i~l~PpL~it~~~id~~~~~l~~ 399 (404)
T d2byla1 366 GLLAKPTHGDIIRFAPPLVIKEDELRESIEIINK 399 (404)
T ss_dssp TEECEEEETTEEEECCCTTCCHHHHHHHHHHHHH
T ss_pred CeEEecCCCCEEEEECCcCCCHHHHHHHHHHHHH
Confidence 9998766678999999999999999999999874
|
| >d1z7da1 c.67.1.4 (A:7-410) Ornithine aminotransferase {Plasmodium yoelii yoelii [TaxId: 73239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Ornithine aminotransferase species: Plasmodium yoelii yoelii [TaxId: 73239]
Probab=98.87 E-value=3.9e-07 Score=101.90 Aligned_cols=278 Identities=14% Similarity=0.134 Sum_probs=153.0
Q ss_pred HHHHHHHHHHhcCCCCcceeeccchHHHHHHHH-HHhhhh--c----CCCCEEEEcC-CCChhHHHHHHHhhcCCC----
Q 001989 213 LLNFQTMIADLTGLPMSNASLLDEGTAAAEAMA-MCNNIQ--K----GKKKTFIIAS-NCHPQTIDICITRADGFD---- 280 (985)
Q Consensus 213 i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~-~a~~~~--~----~~g~~Vlv~~-~~H~s~~~~~~~~a~~~g---- 280 (985)
..++++.++++.+.+. +.++.+|+.+.++++ +++.+. + ..+.+++... +.|......+.. .....
T Consensus 83 ~~~~~~~~~~~~~~~~--v~~~~sgs~a~~~a~k~ar~~~~~~~~~~~~~~~~~~~~~~~hg~~~~~~~~-~~~~~~~~~ 159 (404)
T d1z7da1 83 LGICERYLTNLLGYDK--VLMMNTGAEANETAYKLCRKWGYEVKKIPENMAKIVVCKNNFSGRTLGCISA-STTKKCTSN 159 (404)
T ss_dssp HHHHHHHHHHHHTCSE--EEEESSHHHHHHHHHHHHHHHHHHTSCCCTTCCEEEEETTC---------------------
T ss_pred HHHHHHhhhhccccce--eeeeccccchHHHHHHHHHHHHhhcccccccccccccccccCCCCccccccc-ccccccccC
Confidence 3456788899998875 677788888777665 444332 1 1233565444 455443333211 00001
Q ss_pred -----eEEEEeCchhh---hc-c-CCCEeEEEEEcC-CCCeeecc----HHHHHHHHHhCCcEEEEEecCc-cccCCCCC
Q 001989 281 -----IKVVVSDLKDI---DY-K-SGDVCGVLVQYP-GTEGEVLD----YGDFIKNAHANGVKVVMATDLL-ALTILKPP 344 (985)
Q Consensus 281 -----i~v~~v~~~~l---~~-l-~~~t~~V~v~~p-n~~G~v~d----i~~I~~~a~~~galliV~a~~~-~lg~l~~~ 344 (985)
-.+..++.+++ +. + ++++++|++.-- ..-|.+.+ +++|.++|+++|+++|+| +.+ ++|-....
T Consensus 160 ~~~~~~~~~~~~~~~~~~l~~~~~~~~iAavi~EPi~g~~G~~~~~~~fl~~l~~lc~~~g~llI~D-EV~tGfgRtG~~ 238 (404)
T d1z7da1 160 FGPFAPQFSKVPYDDLEALEEELKDPNVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVAD-EVQTGLGRTGKL 238 (404)
T ss_dssp ------CEEEECTTCHHHHHHHHTSTTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEE-CTTTTTTTTSSS
T ss_pred CCCCCccccccccchHHHHHHHhcCCCEEEEEEEEEcCCCCCccCCHHHHHHHHHHHHHcCCEEEEE-cCccCCCccccc
Confidence 11222333333 33 3 457888887532 45677766 899999999999999994 433 34322111
Q ss_pred ---Cccc--ceEEEecCccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCC
Q 001989 345 ---GELG--ADIVVGSAQRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSN 419 (985)
Q Consensus 345 ---~~~G--aDi~v~s~k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsn 419 (985)
..+| .||++ -+|.++ .|++-+|.+.+++++.+.+.+...| +|.+
T Consensus 239 ~~~e~~gv~PDivt-~gK~l~----gG~~p~~~v~~~~~i~~~~~~~~~~--------------------------~T~~ 287 (404)
T d1z7da1 239 LCVHHYNVKPDVIL-LGKALS----GGHYPISAVLANDDIMLVIKPGEHG--------------------------STYG 287 (404)
T ss_dssp SGGGGGTCCCSEEE-ECGGGG----TTSSCCEEEEECHHHHTTCCTTCCC--------------------------CTTT
T ss_pred ccccccCCCCCEEE-Eccccc----CCCCCcccccchHHHHccCCCCCcC--------------------------cCCC
Confidence 1233 58763 358775 3445567788999988776432111 1111
Q ss_pred ccchhHHHHHHHHH-HHHHhCcchH-HHHHHHHHHHHHHHHHHHhcCCCeE-EcCCCCcceEEEecCC--HHHHHHHHHH
Q 001989 420 ICTAQALLANMAAM-YAVYHGPEGL-KTIAQRVHGLAGTFALGLKKLGTVE-VQGLPFFDTVKVKCAD--AHAIASAAYK 494 (985)
Q Consensus 420 i~t~~~l~a~~aa~-~l~~~g~~Gl-~~i~~~~~~~a~~l~~~L~~~g~~~-~~~~~~~~~~~~~~~~--~~~v~~~L~~ 494 (985)
. .++ +.+|+. .+..+..+.+ +.+.+....+.+.+.+.+++.+.+. +-+...+-.+.+..+. ..++.++|.+
T Consensus 288 --g-npl-~~aaa~a~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~vrg~Gl~~~i~~~~~~~~~~~~~~~l~~ 363 (404)
T d1z7da1 288 --G-NPL-AASICVEALNVLINEKLCENAEKLGGPFLENLKRELKDSKIVRDVRGKGLLCAIEFKNELVNVLDICLKLKE 363 (404)
T ss_dssp --T-CHH-HHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTCTTEEEEEEETTEEEEEECTTTCCHHHHHHHHHH
T ss_pred --C-Ccc-hhhhhhhhhhhhhcchhhhhhccchhHHHHHHHHHHhcCCCeEEEEeeCcEEEEEEcCCcccHHHHHHHHHh
Confidence 1 222 222222 2344444433 2332333333444444444443221 1111122234444433 7789999999
Q ss_pred cCceeeeecCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 495 IEMNLRVVDSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 495 ~GI~~~~~~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
+|+.+.....+.||+++....|++|||+++++|.+
T Consensus 364 ~Gl~~~~~~~~~ir~~Ppl~it~~~id~~~~~l~~ 398 (404)
T d1z7da1 364 NGLITRDVHDKTIRLTPPLCITKEQLDECTEIIVK 398 (404)
T ss_dssp TTEECCEETTTEEEECCCTTCCHHHHHHHHHHHHH
T ss_pred CCeEEecCCCCEEEEECCcCCCHHHHHHHHHHHHH
Confidence 99998776678899999988999999999999975
|
| >d1vefa1 c.67.1.4 (A:9-395) Acetylornithine/acetyl-lysine aminotransferase ArgD {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Acetylornithine/acetyl-lysine aminotransferase ArgD species: Thermus thermophilus [TaxId: 274]
Probab=98.81 E-value=3.8e-07 Score=101.24 Aligned_cols=270 Identities=16% Similarity=0.156 Sum_probs=158.3
Q ss_pred HHHHHhcCCCCcceeeccchHHHHHHHH-HHhhhhcCCCCEEEEcC-CCChhHHHHHHH--------hhcCCCeEEEEeC
Q 001989 218 TMIADLTGLPMSNASLLDEGTAAAEAMA-MCNNIQKGKKKTFIIAS-NCHPQTIDICIT--------RADGFDIKVVVSD 287 (985)
Q Consensus 218 ~~ia~L~g~~~~~~sl~~~~ta~~ea~~-~a~~~~~~~g~~Vlv~~-~~H~s~~~~~~~--------~a~~~gi~v~~v~ 287 (985)
..+.+........+.+.++|+.++|+++ +|+.++ .+++|+.-+ +-|..+...+.. .....--.+..+|
T Consensus 86 ~~l~~~~~~~~~~v~f~~sGseA~e~Aik~Ar~~t--~r~~ii~~~~~yHG~t~~~~~~s~~~~~~~~~~p~~~~~~~~p 163 (387)
T d1vefa1 86 RTLTAILPPELNRVFPVNSGTEANEAALKFARAHT--GRKKFVAAMRGFSGRTMGSLSVTWEPKYREPFLPLVEPVEFIP 163 (387)
T ss_dssp HHHHHTSCTTEEEEEEESSHHHHHHHHHHHHHHHH--SCCEEEEETTCCCCSSHHHHHTCCCHHHHGGGCSCSSCEEEEC
T ss_pred HHhhhhccccceeeccccCchHHHHHHHHHHHhhc--ccceecccccCCCCCccceEeccCCccccCCCCCCCCCceEeC
Confidence 3455555544445778899999999877 566555 566776555 566555444321 0011112344555
Q ss_pred c---hhhhc-cCCCEeEEEEEcC-CCCeeecc----HHHHHHHHHhCCcEEEEEecCc-cccCCCCC---Cccc--ceEE
Q 001989 288 L---KDIDY-KSGDVCGVLVQYP-GTEGEVLD----YGDFIKNAHANGVKVVMATDLL-ALTILKPP---GELG--ADIV 352 (985)
Q Consensus 288 ~---~~l~~-l~~~t~~V~v~~p-n~~G~v~d----i~~I~~~a~~~galliV~a~~~-~lg~l~~~---~~~G--aDi~ 352 (985)
. +.|++ +++++++|++.-- ...|.+.+ +++|.++|+++|+++|+| +.. ++|-.... ..+| .||+
T Consensus 164 ~~d~~~l~~~~~~~iAavi~EPi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~D-EV~tGfgR~G~~~~~~~~~v~PDi~ 242 (387)
T d1vefa1 164 YNDVEALKRAVDEETAAVILEPVQGEGGVRPATPEFLRAAREITQEKGALLILD-EIQTGMGRTGKRFAFEHFGIVPDIL 242 (387)
T ss_dssp TTCHHHHHHHCCTTEEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEE-CTTTTTTTTSSSSTHHHHTCCCSEE
T ss_pred CCCHHHHHHhcCCCeEEEEEECCCCCCCCccCCHHHHHHHHHHHHHcCceEEec-ccccccCccCCCcccccCCcCCcee
Confidence 4 45666 7889999887421 45677765 999999999999999995 333 34322211 1233 4886
Q ss_pred EecCccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHH
Q 001989 353 VGSAQRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAA 432 (985)
Q Consensus 353 v~s~k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa 432 (985)
+.+ |.+++ |-|-.++ ..+++..+.+.+...| +|- .+ .++ +.+|+
T Consensus 243 ~~g-K~l~g----G~~~~~~-~~~~~~~~~~~~~~~g--------------------------~T~--~g-nPl-a~aaa 286 (387)
T d1vefa1 243 TLA-KALGG----GVPLGVA-VMREEVARSMPKGGHG--------------------------TTF--GG-NPL-AMAAG 286 (387)
T ss_dssp EEC-GGGGT----TSSCEEE-EEEHHHHHTSCTTSSC--------------------------CSS--TT-CHH-HHHHH
T ss_pred eec-ccCCC----Ccccccc-ccceeeeeccccCCcc--------------------------ccC--CC-Ccc-hhhhc
Confidence 644 66752 4454454 4555555544221111 111 01 122 22222
Q ss_pred H-HHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCC--eE-EcCCCCcceEEEecCCHHHHHHHHHHcCceeeeecCCeEE
Q 001989 433 M-YAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGT--VE-VQGLPFFDTVKVKCADAHAIASAAYKIEMNLRVVDSNTVT 508 (985)
Q Consensus 433 ~-~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~--~~-~~~~~~~~~~~~~~~~~~~v~~~L~~~GI~~~~~~~~~lr 508 (985)
. .+..+-. +++.++..++.++++++|+++.. +. +-..-.+..+.++.+....+.+.+.++|+.+....++.+|
T Consensus 287 ~a~L~~l~~---~~~~~~v~~~g~~l~~~L~~l~~~~v~~vrg~Gl~~~ie~~~~~~~~~~~~~~~~g~l~~~~g~~~ir 363 (387)
T d1vefa1 287 VAAIRYLER---TRLWERAAELGPWFMEKLRAIPSPKIREVRGMGLMVGLELKEKAAPYIARLEKEHRVLALQAGPTVIR 363 (387)
T ss_dssp HHHHHHHHH---HTTHHHHHHHHHHHHHHHHTSCCTTEEEEEEETTEEEEEESSCSHHHHHHHHHHHCEECEESSTTEEE
T ss_pred ccchhhccc---ccccchHhhhhHHHHHHHHhcCCCceEEEeecceEEEEEEeCCchHHHHHHHHHCCCeEEecCCCEEE
Confidence 2 2344433 34566777888999999987631 11 1110111123333233777888888889876655567899
Q ss_pred EEeccCCCHHHHHHHHHHHhC
Q 001989 509 ASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 509 is~t~~~t~edId~li~aL~~ 529 (985)
+++....|++|||++++++++
T Consensus 364 ~~Ppl~it~~~ld~~~~~i~~ 384 (387)
T d1vefa1 364 FLPPLVIEKEDLERVVEAVRA 384 (387)
T ss_dssp ECCCTTCCHHHHHHHHHHHHH
T ss_pred EECCccCCHHHHHHHHHHHHH
Confidence 999999999999999999863
|
| >d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tryptophan indol-lyase (tryptophanase) species: Escherichia coli [TaxId: 562]
Probab=98.77 E-value=3.5e-08 Score=112.81 Aligned_cols=282 Identities=12% Similarity=0.053 Sum_probs=154.3
Q ss_pred HHHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhh------cCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEE
Q 001989 211 ESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQ------KGKKKTFIIASNCHPQTIDICITRADGFDIKVV 284 (985)
Q Consensus 211 ~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~------~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~ 284 (985)
+.+.++++.+|+++|++. +.++++||++.+.++.+.... .++..-|+.+...|......+. ..|..++
T Consensus 74 ~~~~~le~~~a~l~G~~~--~~~~~sGt~A~~~a~~~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~----~~G~~~~ 147 (467)
T d2v1pa1 74 RSYYALAESVKNIFGYQY--TIPTHQGRGAEQIYIPVLIKKREQEKGLDRSKMVAFSNYFFDTTQGHSQ----INGCTVR 147 (467)
T ss_dssp HHHHHHHHHHHHHTCCSE--EEEECSSTTTHHHHHHHHHHHHHHHHCCCTTTCEEEESSCCHHHHHHHH----HTTCEEE
T ss_pred chHHHHHHHHHHHHCCCE--EEECCCCHHHHHHHHHHHhhccceEecCCCCcEEEEecccccccHHHHH----HcCCeee
Confidence 334578899999999986 567788888887777554321 1123345666667777766653 2477777
Q ss_pred EeCc------------------hhhhc-c---C-CCEeEEEEEcC-CCC-eee---ccHHHHHHHHHhCCcEEEEE-ecC
Q 001989 285 VSDL------------------KDIDY-K---S-GDVCGVLVQYP-GTE-GEV---LDYGDFIKNAHANGVKVVMA-TDL 335 (985)
Q Consensus 285 ~v~~------------------~~l~~-l---~-~~t~~V~v~~p-n~~-G~v---~di~~I~~~a~~~galliV~-a~~ 335 (985)
.++. +++++ + + +.++++++... |.. |.+ .++++|.++||++|+++++| ++.
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~i~~e~~~~~~gg~~~~~~~l~~i~~ia~~~g~~l~~D~a~~ 227 (467)
T d2v1pa1 148 NVYIKEAFDTGVRYDFKGNFDLEGLERGIEEVGPNNVPYIVATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVMDSARF 227 (467)
T ss_dssp ECBCTTTTCTTSCCTTTTCBCHHHHHHHHHHHCGGGCCCEEEESSBCGGGCBCCCHHHHHHHHHHHHHTTCCEEEECTTH
T ss_pred ecccccccccccccccccCCCHHHHHHHHhhcCccccceeeecceeeccccccCCHHHHHHHHHHHHHcCCEEEEechhh
Confidence 6532 34544 3 2 34677777765 333 333 47899999999999999995 332
Q ss_pred ccccCC---CCCC-----------c--ccceEEEecC-ccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCc
Q 001989 336 LALTIL---KPPG-----------E--LGADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKP 398 (985)
Q Consensus 336 ~~lg~l---~~~~-----------~--~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~ 398 (985)
+..... ...+ + -.+|++.++. |.+ |||..|+++.+++.+....-.
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~d~~s~s~~K~~------~~~~gg~i~~~~~~~~~~~~~------------ 289 (467)
T d2v1pa1 228 AENAYFIKQREAEYKDWTIEQITRETYKYADMLAMSAKKDA------MVPMGGLLCMKDDSFFDVYTE------------ 289 (467)
T ss_dssp HHHHHHHHHHCGGGTTSCHHHHHHHHGGGCSEEEEESSSTT------CCSSCEEEEECSGGGHHHHHH------------
T ss_pred hccccccccccccccCCcccccchhhcccCCEEEecCCCCC------CCCCceeEEecchhhhhHHHh------------
Confidence 211000 0000 1 1378888887 544 445568888876533211000
Q ss_pred ceeeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCCCcceE
Q 001989 399 ALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDTV 478 (985)
Q Consensus 399 ~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~~~~~~ 478 (985)
.+...+.++ +....+..... ++.+........ ..++..++..++++||+++|.+.| +.+... ..+.+
T Consensus 290 -------~~~~~~~~~-~~~~~~~~~~~-~~~a~~~~~~~~--~~~~~~~~~~~~~~~l~~~L~~~~-~~v~~~-~~~~~ 356 (467)
T d2v1pa1 290 -------CRTLCVVQE-GFPTYGGLEGG-AMERLAVGLYDG--MNLDWLAYRIAQVQYLVDGLEEIG-VVCQQA-GGHAA 356 (467)
T ss_dssp -------HHHHHHHTT-SSCCCCCCCHH-HHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHHHTT-CCEEEE-CSSCE
T ss_pred -------hcccccccc-cCcchhhhHHH-HHHHHHHHhHHh--hhHHHHHHHHHHHHHHHHHHHhcC-CcccCC-Cccce
Confidence 000000011 11111111222 112211111111 114566666789999999999986 444311 11111
Q ss_pred EEe-------cC--C--HH-HHHHHHHHcCceeee-----------------ecCCeEEEEec-cCCCHHHHHHHHHHHh
Q 001989 479 KVK-------CA--D--AH-AIASAAYKIEMNLRV-----------------VDSNTVTASFD-ETTTLEDVDKLFIVFA 528 (985)
Q Consensus 479 ~~~-------~~--~--~~-~v~~~L~~~GI~~~~-----------------~~~~~lris~t-~~~t~edId~li~aL~ 528 (985)
.+. .. . .. .+.+.+.+.||.... ...+.+|+++. ...|+||||+++++|.
T Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gi~~~~~g~~~~~~~~~~~~~~~~~~~~vRlaip~~~~T~eeiD~vv~~l~ 436 (467)
T d2v1pa1 357 FVDAGKLLPHIPADQFPAQALACELYKVAGIRAVEIGSFLLGRDPKTGKQLPCPAELLRLTIPRATYTQTHMDFIIEAFK 436 (467)
T ss_dssp EEEHHHHSTTSCGGGCHHHHHHHHHHHHHCEECEEESHHHHCBCTTTCSBCCCSCCEEEECCCTTTCCHHHHHHHHHHHH
T ss_pred eecchhhcCCcchhhhhhHHHHHHHHHHcCCeeecccccccccccccCCccCCCcceEEEecCCCCCCHHHHHHHHHHHH
Confidence 111 11 1 23 344455677884210 01367999874 5679999999999998
Q ss_pred C
Q 001989 529 G 529 (985)
Q Consensus 529 ~ 529 (985)
+
T Consensus 437 ~ 437 (467)
T d2v1pa1 437 H 437 (467)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >d7aata_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Chicken (Gallus gallus), mitochondria [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Chicken (Gallus gallus), mitochondria [TaxId: 9031]
Probab=98.66 E-value=1.1e-06 Score=97.88 Aligned_cols=311 Identities=12% Similarity=0.029 Sum_probs=162.4
Q ss_pred cCCCCCCC-----CCcHHHHH---HHHhCCccccccCCChhhHhhhHHHHHHHHHHHHHHhcCC------CCcceeecc-
Q 001989 171 IGMGYYNT-----HVPPVILR---NIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGL------PMSNASLLD- 235 (985)
Q Consensus 171 lG~g~y~~-----~~p~~v~~---~i~~~~~~~t~~~pyq~e~sqg~l~~i~e~q~~ia~L~g~------~~~~~sl~~- 235 (985)
||.|.|.. .+++.|.+ .++.++. ...|+|.+ |.. ++++.+|+++-- +..++....
T Consensus 33 L~iG~~~d~~~~~~~~~~V~~a~~~~~~~~~-~~~Y~~~~-----G~~----~lr~aia~~~~~~~~~~~~~~~i~~~~~ 102 (401)
T d7aata_ 33 LGVGAYRDDNGKPYVLNCVRKAEAMIAAKKM-DKEYLPIA-----GLA----DFTRASAELALGENSEAFKSGRYVTVQG 102 (401)
T ss_dssp CCCCSCCCTTSCCCCCHHHHHHHHHHHHTTC-CCCCCCTT-----CCH----HHHHHHHHHHHCTTCHHHHTTCEEEEEE
T ss_pred ccCCCCcCCCCCCCCCHHHHHHHHHHhhCCC-CCCCCCCC-----CCH----HHHHHHHHHHhccCCcccCcCceEEecc
Confidence 68886542 23445532 3344443 23566643 332 355566655421 223343332
Q ss_pred -chHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc----------hhhhc----cCCCEeE
Q 001989 236 -EGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL----------KDIDY----KSGDVCG 300 (985)
Q Consensus 236 -~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~----------~~l~~----l~~~t~~ 300 (985)
+++.+..++...++.--++||+|++++-.++.+...++. .|.+++.+++ +++.+ ..+++++
T Consensus 103 ~~~~g~~~~~~~~~~~l~~pGd~Vlv~~P~y~~y~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (401)
T d7aata_ 103 ISGTGSLRVGANFLQRFFKFSRDVYLPKPSWGNHTPIFRD----AGLQLQAYRYYDPKTCSLDFTGAMEDISKIPEKSII 178 (401)
T ss_dssp EHHHHHHHHHHHHHHHHCTTCCEEEEEESCCTTHHHHHHH----TTCEEEEEECEETTTTEECHHHHHHHHTTSCTTCEE
T ss_pred chHHHHHHHHHHhhHhhcCCCceEEEecCCCcchhhHHHH----cCCeEEEEeccccccccccHHHHHHHHhcCCCceEE
Confidence 333344444333221124899999999999998888753 5888888764 12222 3567888
Q ss_pred EEEEcC-CCCeeec---cHHHHHHHHHhCCcEEEEEecCccccCCCC----C------Ccccce-EEEec-CccccccCC
Q 001989 301 VLVQYP-GTEGEVL---DYGDFIKNAHANGVKVVMATDLLALTILKP----P------GELGAD-IVVGS-AQRFGVPMG 364 (985)
Q Consensus 301 V~v~~p-n~~G~v~---di~~I~~~a~~~galliV~a~~~~lg~l~~----~------~~~GaD-i~v~s-~k~lg~P~~ 364 (985)
+++.+| |.+|.+. .+++|+++|++++++++.|. +...-.... + ...+.. +++.+ +|+++.|
T Consensus 179 iii~~p~NPTG~~~s~e~~~~l~~~a~~~~~~ii~De-~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~sk~~~~~-- 255 (401)
T d7aata_ 179 LLHACAHNPTGVDPRQEQWKELASVVKKRNLLAYFDM-AYQGFASGDINRDAWALRHFIEQGIDVVLSQSYAKNMGLY-- 255 (401)
T ss_dssp EEESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEE-SCTTTTTSCHHHHTHHHHHHHHTTCCCEEEEECTTTSCCG--
T ss_pred EEecCCCCCccccCCHHHHHHHHHHHhcceEEEEEec-cchhhhcCCcccchhhhhhhhhhhcccceeEeccccceee--
Confidence 888888 8999885 58999999999999999853 222111110 0 011222 33333 4887643
Q ss_pred CCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHHH-----HhC
Q 001989 365 YGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAV-----YHG 439 (985)
Q Consensus 365 ~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~-----~~g 439 (985)
|--+|++.+.....+.+... . +....-..+...|++...... ++.++. -..
T Consensus 256 --G~RiG~~~~~~~~~~~~~~~-~--------------------~~~~~~~~~~~~~~~~~~q~~-~~~~l~~~~~~~~~ 311 (401)
T d7aata_ 256 --GERAGAFTVICRDAEEAKRV-E--------------------SQLKILIRPMYSNPPMNGARI-ASLILNTPELRKEW 311 (401)
T ss_dssp --GGCEEEEEEECSSHHHHHHH-H--------------------HHHHHHHHHHHSSCCHHHHHH-HHHHHHCHHHHHHH
T ss_pred --ccccceeecchHHHHHHHHH-H--------------------HHHHHHhhccccccchHHHHH-HHHhcCCHHHHHHH
Confidence 34568887765544322000 0 000000001122222222122 221111 001
Q ss_pred cchHHHHHHHHHHHHHHHHHHHhcCCC---eEEcCCCCcceEEEecCCHHHHHHHH-HHcCceeeeecCCeEEEEeccCC
Q 001989 440 PEGLKTIAQRVHGLAGTFALGLKKLGT---VEVQGLPFFDTVKVKCADAHAIASAA-YKIEMNLRVVDSNTVTASFDETT 515 (985)
Q Consensus 440 ~~Gl~~i~~~~~~~a~~l~~~L~~~g~---~~~~~~~~~~~~~~~~~~~~~v~~~L-~~~GI~~~~~~~~~lris~t~~~ 515 (985)
..-++++.++..++.+.+.+.|+++|. +..+. +...-|. ..+-..+..++| .++||.+-. + .|+|+...
T Consensus 312 ~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~-~~~G~F~-~~~ls~e~~~~L~~e~gV~~~p---g-~Ris~a~~- 384 (401)
T d7aata_ 312 LVEVKGMADRIISMRTQLVSNLKKEGSSHNWQHIT-DQIGMFC-FTGLKPEQVERLTKEFSIYMTK---D-GRISVAGV- 384 (401)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCHHHH-HCCSSEE-ECCCCHHHHHHHHHHHCEECCT---T-CEEEGGGC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcceEC-CCCeEEE-ecCCCHHHHHHHHHhCCEEECC---C-cEEEeccC-
Confidence 123456666677788888999998761 11110 1111133 232233445666 456987643 3 59987643
Q ss_pred CHHHHHHHHHHHhC
Q 001989 516 TLEDVDKLFIVFAG 529 (985)
Q Consensus 516 t~edId~li~aL~~ 529 (985)
++++||+++++|.+
T Consensus 385 ~~~~i~~la~ai~~ 398 (401)
T d7aata_ 385 ASSNVGYLAHAIHQ 398 (401)
T ss_dssp CTTTHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 45579999988863
|
| >d1sffa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase species: Escherichia coli [TaxId: 562]
Probab=98.55 E-value=1e-05 Score=90.70 Aligned_cols=274 Identities=15% Similarity=0.138 Sum_probs=153.3
Q ss_pred HHHHHHHHHhcCCC-CcceeeccchHHHHHHHH-HHhhhhcCCCCEEEEcC-CCChhHHHHHHHhhc----C-------C
Q 001989 214 LNFQTMIADLTGLP-MSNASLLDEGTAAAEAMA-MCNNIQKGKKKTFIIAS-NCHPQTIDICITRAD----G-------F 279 (985)
Q Consensus 214 ~e~q~~ia~L~g~~-~~~~sl~~~~ta~~ea~~-~a~~~~~~~g~~Vlv~~-~~H~s~~~~~~~~a~----~-------~ 279 (985)
.++.+.+++++..+ ...+.+.++||.+.|+++ +|+.++ .+++|+.-+ +-|..+...+..... . .
T Consensus 86 ~~la~~l~~~~p~~~~~~v~f~~sGseA~e~Alk~ar~~t--~r~~ii~~~~~yHG~t~~~~~~t~~~~~~~~~~~~~~~ 163 (425)
T d1sffa_ 86 LELCEIMNQKVPGDFAKKTLLVTTGSEAVENAVKIARAAT--KRSGTIAFSGAYHGRTHYTLALTGKVNPYSAGMGLMPG 163 (425)
T ss_dssp HHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHHHHHH--TCCEEEEETTCCCCSSHHHHHHSSCCTTTTTTSCCCCS
T ss_pred HHHHHHHHhhhhhcccceeeeeccccchhhhHHHHhhhhh--cccceEeecCCCcCccccchhhcCCCCcccCCcccccC
Confidence 34556788888543 234666788998888777 566555 567776554 577655544421100 0 0
Q ss_pred CeEEEEeCc---h-----------hhhc---cCCCEeEEEEEcC-CCCeeec----cHHHHHHHHHhCCcEEEEEecCc-
Q 001989 280 DIKVVVSDL---K-----------DIDY---KSGDVCGVLVQYP-GTEGEVL----DYGDFIKNAHANGVKVVMATDLL- 336 (985)
Q Consensus 280 gi~v~~v~~---~-----------~l~~---l~~~t~~V~v~~p-n~~G~v~----di~~I~~~a~~~galliV~a~~~- 336 (985)
.......+. + ++.. ..+++++|++.-- ...|.+. =+++|.++|+++|+++|+| +..
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vaavi~EPi~g~~G~~~~~~~~l~~l~~lc~~~gillI~D-EV~t 242 (425)
T d1sffa_ 164 HVYRALYPCPLHGISEDDAIASIHRIFKNDAAPEDIAAIVIEPVQGEGGFYASSPAFMQRLRALCDEHGIMLIAD-EVQS 242 (425)
T ss_dssp SEEEECCCBGGGTBCHHHHHHHHHHHHHHTCCGGGEEEEEECSBCTTTTSCBCCHHHHHHHHHHHHHHTCEEEEE-CTTT
T ss_pred CccccCCccccccccchhhHHHHHHHHHhcccccceEEEEecCccCCCCcccCCHHHHHHHHHHHHHcCceEEec-cccc
Confidence 111111111 0 1111 1356788887542 3456554 2799999999999999995 332
Q ss_pred cccCCCCC---Cccc--ceEEEecCccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccc
Q 001989 337 ALTILKPP---GELG--ADIVVGSAQRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHI 411 (985)
Q Consensus 337 ~lg~l~~~---~~~G--aDi~v~s~k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~i 411 (985)
++|-.... ..+| .||++ -+|.+++ |-| +|.+.+++++.+.+.+...|
T Consensus 243 G~gR~g~~~a~~~~gv~PDi~~-~gK~l~g----G~P-~~av~~~~~i~~~~~~~~~~---------------------- 294 (425)
T d1sffa_ 243 GAGRTGTLFAMEQMGVAPDLTT-FAKSIAG----GFP-LAGVTGRAEVMDAVAPGGLG---------------------- 294 (425)
T ss_dssp TTTTTSSSSGGGGTTSCCSEEE-ECGGGGT----SSC-CEEEEEEHHHHTTSCTTSBC----------------------
T ss_pred cCCCcchhhHHHhcCCCcccee-cccccCC----Ccc-eEEEEEcHHHHHhhCCCCCC----------------------
Confidence 23222111 1233 58766 4587753 456 55667888887765321111
Q ss_pred cccccCCCccchhHHHHHHHHH-HHHHhCcchHHHHHHHHHHHHHHHHHHHhcC----CCe-EEcCCCCcceEEEec---
Q 001989 412 RRDKATSNICTAQALLANMAAM-YAVYHGPEGLKTIAQRVHGLAGTFALGLKKL----GTV-EVQGLPFFDTVKVKC--- 482 (985)
Q Consensus 412 rre~atsni~t~~~l~a~~aa~-~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~----g~~-~~~~~~~~~~~~~~~--- 482 (985)
+| + +..++ +++|++ .+..+.++. +.++...+.++++++|+++ +.+ .+.+...+..+.|..
T Consensus 295 ----~T-~--~gnpl-~~aaa~a~L~~i~~~~---~~~~~~~~g~~l~~~l~~~~~~~~~v~~vrg~Gl~~~i~f~~~~~ 363 (425)
T d1sffa_ 295 ----GT-Y--AGNPI-ACVAALEVLKVFEQEN---LLQKANDLGQKLKDGLLAIAEKHPEIGDVRGLGAMIAIELFEDGD 363 (425)
T ss_dssp ----CS-S--SSCHH-HHHHHHHHHHHHHHTT---HHHHHHHHHHHHHHHHHHHHHTCTTEEEEEEETTEEEEEEBGGGC
T ss_pred ----CC-C--CcCHH-HHHHHHHHHHHHHHhh---hhhhhhhhhhhhhhhhhhhHhhCCceEEEEccccEEEEEEeccCc
Confidence 11 1 11122 223333 245554433 4455556666666665543 311 111111122233321
Q ss_pred ---CC---HHHHHHHHHHcCceeeee--cCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 483 ---AD---AHAIASAAYKIEMNLRVV--DSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 483 ---~~---~~~v~~~L~~~GI~~~~~--~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
++ ...+.++|.++|+.+... ..+.+|+++....|++|||+++++|.+
T Consensus 364 ~~~~~~~~~~~~~~~l~~~Gvl~~~~g~~~n~i~~~PpL~it~~eid~~l~~l~~ 418 (425)
T d1sffa_ 364 HNKPDAKLTAEIVARARDKGLILLSCGPYYNVLRILVPLTIEDAQIRQGLEIISQ 418 (425)
T ss_dssp TTSBCHHHHHHHHHHHHHTTEECEEESTTSCEEEECCCTTCCHHHHHHHHHHHHH
T ss_pred cCCccHHHHHHHHHHHHHCCCEEeccCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 12 567888999999988654 357899999999999999999999974
|
| >d1s0aa_ c.67.1.4 (A:) Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA species: Escherichia coli [TaxId: 562]
Probab=98.55 E-value=5.8e-06 Score=92.70 Aligned_cols=280 Identities=14% Similarity=0.109 Sum_probs=158.7
Q ss_pred HHHHHHHHhcCCCCcceeeccchHHHHHHHH-HHhhhh--c-CCCCEEEEcC-CCChhHHHHHHHhh---------cCCC
Q 001989 215 NFQTMIADLTGLPMSNASLLDEGTAAAEAMA-MCNNIQ--K-GKKKTFIIAS-NCHPQTIDICITRA---------DGFD 280 (985)
Q Consensus 215 e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~-~a~~~~--~-~~g~~Vlv~~-~~H~s~~~~~~~~a---------~~~g 280 (985)
++.+.+++.+..+...+.+..+|+.+.|+++ +++.++ + +++.+||.-+ +-|..+...+.... ....
T Consensus 90 ~l~~~l~~~~~~~~~~v~f~~sGseA~e~A~k~ar~~~~~~g~~~~~ii~~~~~yHG~t~~a~~~t~~~~~~~~~~~~~~ 169 (429)
T d1s0aa_ 90 ELCRKLVAMTPQPLECVFLADSGSVAVEVAMKMALQYWQAKGEARQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWKGYL 169 (429)
T ss_dssp HHHHHHHHHSCTTCCEEEEESSHHHHHHHHHHHHHHHHHHHTCCCCEEEEETTCCCCSSHHHHTTSCTTTTTGGGGTTTS
T ss_pred HHHHHHHhhhccCcceeeeccccccchhhhhhhhhheeecccccccEEEEecCCccccchhhhhhcCCccccccccCccc
Confidence 3445677777666566888899999999777 454432 2 2345676554 67766654432100 0000
Q ss_pred eEEEEeC-----------ch---hhhc----cCCCEeEEEEEcC--CCCeeec-c---HHHHHHHHHhCCcEEEEEecCc
Q 001989 281 IKVVVSD-----------LK---DIDY----KSGDVCGVLVQYP--GTEGEVL-D---YGDFIKNAHANGVKVVMATDLL 336 (985)
Q Consensus 281 i~v~~v~-----------~~---~l~~----l~~~t~~V~v~~p--n~~G~v~-d---i~~I~~~a~~~galliV~a~~~ 336 (985)
......+ .+ ++++ -.+++++|++.-. +.-|.+. | +++|.++|+++|+++|+| +..
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iaavivEPi~~~~gg~~~~~~~fl~~lr~lc~~~gillI~D-EV~ 248 (429)
T d1s0aa_ 170 PENLFAPAPQSRMDGEWDERDMVGFARLMAAHRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIAD-EIA 248 (429)
T ss_dssp CCCEEECCCCSBC-CCCCGGGGHHHHHHHHHHTTTEEEEEECSSEECTTTCEEBCTHHHHHHHHHHHHHTCEEEEE-CTT
T ss_pred cccccccccccccccccchhhhhhhhhhhhhcCCccceeeecceeccCCCccCCCHHHHHHHHHHHHHcCcceehh-hcc
Confidence 0111111 11 2222 2567888887642 4445443 3 899999999999999995 332
Q ss_pred -cccCCCCC---Cccc--ceEEEecCccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeeccccccc
Q 001989 337 -ALTILKPP---GELG--ADIVVGSAQRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQH 410 (985)
Q Consensus 337 -~lg~l~~~---~~~G--aDi~v~s~k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~ 410 (985)
++|-.... ..+| .||++.+ |.++ .|+.-+|.+.+++++.+.+...- . ..|.
T Consensus 249 tGfGRtG~~~~~~~~~v~PDi~~~g-K~l~----gG~~p~~av~~~~~i~~~~~~~~--------~-~~~~--------- 305 (429)
T d1s0aa_ 249 TGFGRTGKLFACEHAEIAPDILCLG-KALT----GGTMTLSATLTTREVAETISNGE--------A-GCFM--------- 305 (429)
T ss_dssp TTTTTTSSSSGGGGGTCCCSEEEEC-GGGG----TSSSCCEEEEECHHHHHHHHTST--------T-SSCS---------
T ss_pred ccccccccccccccceecccccccc-cccc----cccccccchhhHHHHHhccCCCC--------C-ccee---------
Confidence 34322211 1233 4886643 6664 35555677788888776542100 0 0010
Q ss_pred ccccccCCCccchhHHHHHHHHH-HHHHhCcchHHHHHHHHHHHHHHHHHHHhcCC---CeE-EcCCCCcceEEEecCC-
Q 001989 411 IRRDKATSNICTAQALLANMAAM-YAVYHGPEGLKTIAQRVHGLAGTFALGLKKLG---TVE-VQGLPFFDTVKVKCAD- 484 (985)
Q Consensus 411 irre~atsni~t~~~l~a~~aa~-~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g---~~~-~~~~~~~~~~~~~~~~- 484 (985)
..+|.+ . .++ +++|+. .+..+..+ ++.++..++.++|+++|+++. .+. +-..-.+..+.+..+.
T Consensus 306 ---~~~T~~--g-np~-~~aaa~a~L~~i~~~---~~~~~~~~~g~~l~~~L~~l~~~~~v~~vrg~Gl~~~~e~~~~~~ 375 (429)
T d1s0aa_ 306 ---HGPTFM--G-NPL-ACAAANASLAILESG---DWQQQVADIEVQLREQLAPARDAEMVADVRVLGAIGVVETTHPVN 375 (429)
T ss_dssp ---CCCTTT--T-CHH-HHHHHHHHHHHHHTC---HHHHHHHHHHHHHHHHHGGGGGCTTEEEEEEETTEEEEEESSCBC
T ss_pred ---ecCCCC--C-Ccc-cchhhhccccccccc---cccchhhHHHHHHHHHHHHhccCCceEEEeecccEEEEEecCccc
Confidence 011111 1 122 222222 24555444 456677778889999997752 111 1110111123333344
Q ss_pred HHHHHHHHHHcCceeeeecCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 485 AHAIASAAYKIEMNLRVVDSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 485 ~~~v~~~L~~~GI~~~~~~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
...+.+.|.++|+.+... .+.+|+++...-|++|||+++++|.+
T Consensus 376 ~~~~~~~~~~~Gl~~~~~-g~~i~~~Ppl~it~~eid~~~~~l~~ 419 (429)
T d1s0aa_ 376 MAALQKFFVEQGVWIRPF-GKLIYLMPPYIILPQQLQRLTAAVNR 419 (429)
T ss_dssp HHHHHHHHHHTTEECCCB-TTEEEECCCTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCcEEEec-CCEEEEeCCcCCCHHHHHHHHHHHHH
Confidence 788999999999988653 57899999999999999999999975
|
| >d1ajsa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pig (Sus scrofa), cytosolic form [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Pig (Sus scrofa), cytosolic form [TaxId: 9823]
Probab=98.54 E-value=9.4e-07 Score=98.88 Aligned_cols=240 Identities=10% Similarity=-0.012 Sum_probs=128.9
Q ss_pred CCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeC-----------chhhhc----cCCCEeEEEEEcC-CCCeeec---
Q 001989 253 GKKKTFIIASNCHPQTIDICITRADGFDIKVVVSD-----------LKDIDY----KSGDVCGVLVQYP-GTEGEVL--- 313 (985)
Q Consensus 253 ~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~-----------~~~l~~----l~~~t~~V~v~~p-n~~G~v~--- 313 (985)
++||+|++++-.++.+...++. .|.+.+.++ .+.+++ ..++++++++.+| |.+|.+.
T Consensus 128 ~pGd~Vlv~~P~y~~y~~~~~~----~G~~~v~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~il~~~P~NPTG~v~s~e 203 (412)
T d1ajsa_ 128 NKDTPVYVSSPTWENHNGVFTT----AGFKDIRSYRYWDTEKRGLDLQGFLSDLENAPEFSIFVLHACAHNPTGTDPTPE 203 (412)
T ss_dssp CCCSCEEEEESCCTHHHHHHHH----TTCSCEEEEECEETTTTEECHHHHHHHHHHSCTTCEEEEESSSCTTTCCCCCHH
T ss_pred CCCCEEEEeCCcchhhHHHHHH----cCCeEEEeecccccccccccHHHHHHHHHhccCCcEEEEecCCCCCcCCCCCHH
Confidence 4899999999999998888764 344332221 112221 4677888888887 8999886
Q ss_pred cHHHHHHHHHhCCcEEEEEecCccccCCCC-----------CCcccceEEEec-CccccccCCCCCCcEEEEEEchhhHh
Q 001989 314 DYGDFIKNAHANGVKVVMATDLLALTILKP-----------PGELGADIVVGS-AQRFGVPMGYGGPHAAFLATSQEYKR 381 (985)
Q Consensus 314 di~~I~~~a~~~galliV~a~~~~lg~l~~-----------~~~~GaDi~v~s-~k~lg~P~~~GGP~~G~l~~~~~~~~ 381 (985)
.+++|+++|+++|++++.|. ....-.... +....-.+++.+ +|+++.| |-.+|++.+.....+
T Consensus 204 ~~~~i~~la~~~~~~ii~De-~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~sk~~~~~----G~R~G~~~~~~~~~~ 278 (412)
T d1ajsa_ 204 QWKQIASVMKRRFLFPFFDS-AYQGFASGNLEKDAWAIRYFVSEGFELFCAQSFSKNFGLY----NERVGNLTVVAKEPD 278 (412)
T ss_dssp HHHHHHHHHHHHTCEEEEEE-SCTTTTTSCHHHHTHHHHHHHHTTCCEEEEEECTTTSCCG----GGCEEEEEEECSSHH
T ss_pred HHHHHHHHHhhCCEEEEecH-hhhhhhcCCcccchhhhhhhhhhcccccccccccccccCC----CCCccccccchhHHH
Confidence 58999999999999998853 222111110 001112344444 4887643 345788877654332
Q ss_pred cCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHHH----HhCcchHHHHHHHHHHHHHHH
Q 001989 382 MMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAV----YHGPEGLKTIAQRVHGLAGTF 457 (985)
Q Consensus 382 ~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~----~~g~~Gl~~i~~~~~~~a~~l 457 (985)
.+. + . .+....-..+.+.|++......++.++.. -...+-++.+.++..++.+.+
T Consensus 279 ~~~-------------~-----~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~l 337 (412)
T d1ajsa_ 279 SIL-------------R-----V---LSQMQKIVRVTWSNPPAQGARIVARTLSDPELFHEWTGNVKTMADRILSMRSEL 337 (412)
T ss_dssp HHH-------------H-----H---HHHHHHHHHTTTSSCCSHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHH-------------H-----H---HHHHHHHhhccccccchHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 220 0 0 00011111122233322222222222110 001122455667777788888
Q ss_pred HHHHhcCCC---eEEcCCCCcceEEEecCC-HHHHHHHHHHcCceeeeecCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 458 ALGLKKLGT---VEVQGLPFFDTVKVKCAD-AHAIASAAYKIEMNLRVVDSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 458 ~~~L~~~g~---~~~~~~~~~~~~~~~~~~-~~~v~~~L~~~GI~~~~~~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
.+.|+++|. +..+. +...-|.+ .+- .+.+.+.+.++||++-. + .|+++.- .++++||++++++.+
T Consensus 338 ~~~L~~~~~~~~~~~i~-~~~G~F~~-~~ls~~~v~~L~~e~gV~~vp---g-~Ri~~ag-~~~~~i~~~a~aI~~ 406 (412)
T d1ajsa_ 338 RARLEALKTPGTWNHIT-DQIGMFSF-TGLNPKQVEYLINQKHIYLLP---S-GRINMCG-LTTKNLDYVATSIHE 406 (412)
T ss_dssp HHHHHHTTCSSCCHHHH-HCCSSEEE-CCCCHHHHHHHHHTTCEECCT---T-SEEEGGG-CCTTTHHHHHHHHHH
T ss_pred HHHHHHhCCCCCeeeec-CCCeEEEe-cCCCHHHHHHHHHhCCEEEeC---C-CeEEecc-CCHHHHHHHHHHHHH
Confidence 999988861 11110 00011332 222 44554444567987632 2 2888753 345678999888864
|
| >d2hoxa1 c.67.1.1 (A:1-425) Alliinase {Garlic (Allium sativum) [TaxId: 4682]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Alliinase species: Garlic (Allium sativum) [TaxId: 4682]
Probab=98.52 E-value=2.1e-06 Score=96.04 Aligned_cols=260 Identities=12% Similarity=0.035 Sum_probs=151.2
Q ss_pred CCcceeeccchHHHHHHHHHHhhhh-----cCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCchhhhc-cCCCEeE
Q 001989 227 PMSNASLLDEGTAAAEAMAMCNNIQ-----KGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDLKDIDY-KSGDVCG 300 (985)
Q Consensus 227 ~~~~~sl~~~~ta~~ea~~~a~~~~-----~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~~~l~~-l~~~t~~ 300 (985)
+..++.+..|+|.++.+++.|+.-. -.++++||++.-.|+.+....+. ......++ ..|.+++++ +++++++
T Consensus 122 ~~~~IvvG~Gsteli~~~~~AL~~~~~~~~~~pg~~Vv~~~P~y~~Y~~~~~~-~~~~~~~~-~~D~~~~~~~~~~~~~i 199 (425)
T d2hoxa1 122 KDRYIVFGVGVTQLIHGLVISLSPNMTATPDAPESKVVAHAPFYPVFREQTKY-FDKKGYVW-AGNAANYVNVSNPEQYI 199 (425)
T ss_dssp TTCEEEEESHHHHHHHHHHHHHSCCTTTCTTSCCEEEEECSSCCHHHHHHHHH-SCBTTEEE-EEEGGGGTTCSCGGGEE
T ss_pred CCCEEEECCCHHHHHHHHHHHhccccccccCCCCCEEEEecCccccHHHHHHH-cCCCCCcc-CCCHHHHHhhCCCCceE
Confidence 4446889999999999888876310 13789999999999998876653 32222222 246677777 7889999
Q ss_pred EEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCccc-cCCCCCCcccceEEEecC-ccccccCCCCCCcEEEEEEch
Q 001989 301 VLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLAL-TILKPPGELGADIVVGSA-QRFGVPMGYGGPHAAFLATSQ 377 (985)
Q Consensus 301 V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~l-g~l~~~~~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~ 377 (985)
+++.+| |++|.+.. +-..|+.+|+| +...- -...-+....=+|++.|. |.++.| |=-+|++.+++
T Consensus 200 i~l~sPnNPtG~l~~-------~v~~~~~~I~D-EaY~~~~f~~~~~~~~~~Ivl~S~SK~fgla----GlRiGw~i~~~ 267 (425)
T d2hoxa1 200 EMVTSPNNPEGLLRH-------AVIKGCKSIYD-MVYYWPHYTPIKYKADEDILLFTMSKFTGHS----GSRFGWALIKD 267 (425)
T ss_dssp EEEESSCTTTCCCCC-------CSSTTCEEEEE-CTTCSTTTSCCCSCBCCSEEEEEHHHHTSCG----GGCCEEEEECC
T ss_pred EEEECCCCCCcchhh-------hhhhCCEEEEe-ccccCccccchhhhcCCeEEEEeCHHhccCc----chheeeEEeCC
Confidence 999999 78998742 12247887773 32210 011112334458889886 888653 22358877764
Q ss_pred h-hHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHH-----HHH---HhCcchHHHHHH
Q 001989 378 E-YKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAM-----YAV---YHGPEGLKTIAQ 448 (985)
Q Consensus 378 ~-~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~-----~l~---~~g~~Gl~~i~~ 448 (985)
+ +.+++-. + ...-+.++.+..-+ +..+++ +.. ....+-++...+
T Consensus 268 ~~i~~~~~~--------------~------------~~~~~~~vs~~~Q~-aa~~aL~~~~~~~~~~~~~~~~~~~~~~~ 320 (425)
T d2hoxa1 268 ESVYNNLLN--------------Y------------MTKNTEGTPRETQL-RSLKVLKEVVAMVKTQKGTMRDLNTFGFK 320 (425)
T ss_dssp HHHHHHHHH--------------H------------HHHHTSSCCHHHHH-HHHHHHHHHHHHHHHHTTSTTSHHHHHHH
T ss_pred HHHHHHHHH--------------h------------hccCcccCCHHHHH-HHHHHhhccHHHHHHHHHHHHHHHHHHHH
Confidence 3 3333200 0 00111222211111 111111 001 111223455566
Q ss_pred HHHHHHHHHHHHHhcCCCeEEcC--CC----Ccc-------eEE-EecCC--HHHHHHHHHHcCceeeee-----cCCeE
Q 001989 449 RVHGLAGTFALGLKKLGTVEVQG--LP----FFD-------TVK-VKCAD--AHAIASAAYKIEMNLRVV-----DSNTV 507 (985)
Q Consensus 449 ~~~~~a~~l~~~L~~~g~~~~~~--~~----~~~-------~~~-~~~~~--~~~v~~~L~~~GI~~~~~-----~~~~l 507 (985)
+..++-+++.+.|++.|.+.+.. .+ ++. .|. ++... ..++.+.|.++||.+..- .++.+
T Consensus 321 ~l~~r~~~l~~~L~~~~~~~l~~~p~~~~~~f~~~~~~~~~~f~wl~~~~~~~~~~~~lL~e~gI~v~pGs~FG~~~~yv 400 (425)
T d2hoxa1 321 KLRERWVNITALLDQSDRFSYQELPQSEYCNYFRRMRPPSPSYAWVKCEWEEDKDCYQTFQNGRINTQNGVGFEASSRYV 400 (425)
T ss_dssp HHHHHHHHHHHHHTTSSSEECCCCCSCEEETTTTEEECCCCSEEEEEECSGGGCSHHHHHHHTTEECEEGGGGTSCTTEE
T ss_pred HHHHHHHHHHHHHHhcCCceeeccCCccceeeeeeccCCCcceeeeeCCCChHHHHHHHHHhCCEEEEechhcCCCCCEE
Confidence 66777788899999887555432 11 111 121 23332 344566788899987531 25789
Q ss_pred EEEeccCCCHHHHHHHHHHHhC
Q 001989 508 TASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 508 ris~t~~~t~edId~li~aL~~ 529 (985)
|+|+. .++|++|++++.|+.
T Consensus 401 Risl~--~~~e~ld~~l~rL~~ 420 (425)
T d2hoxa1 401 RLSLI--KTQDDFDQLMYYLKD 420 (425)
T ss_dssp EEECS--SCHHHHHHHHHHHHH
T ss_pred EEEec--CCHHHHHHHHHHHHH
Confidence 99974 578899999988863
|
| >d2gsaa_ c.67.1.4 (A:) Glutamate-1-semialdehyde aminomutase (aminotransferase) {Synechococcus sp., strain GR6 [TaxId: 1131]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Glutamate-1-semialdehyde aminomutase (aminotransferase) species: Synechococcus sp., strain GR6 [TaxId: 1131]
Probab=98.51 E-value=1.3e-05 Score=89.86 Aligned_cols=269 Identities=14% Similarity=0.159 Sum_probs=145.6
Q ss_pred HHHHHHHhcCCCCcceeeccchHHHHHHHH-HHhhhhcCCCCEEEEc-CCCChhHHHHH-------HHhhc---------
Q 001989 216 FQTMIADLTGLPMSNASLLDEGTAAAEAMA-MCNNIQKGKKKTFIIA-SNCHPQTIDIC-------ITRAD--------- 277 (985)
Q Consensus 216 ~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~-~a~~~~~~~g~~Vlv~-~~~H~s~~~~~-------~~~a~--------- 277 (985)
+.+.++++.+-. ..+.+.++|+.+.|+++ +|+.++ .+++||.- .+-|..+...+ .+.-.
T Consensus 97 la~~~~~~~~~~-~~v~f~~sGseA~e~Alk~ar~~t--~r~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~p~~~~~~~~ 173 (427)
T d2gsaa_ 97 LAEMVNDAVPSI-EMVRFVNSGTEACMAVLRLMRAYT--GRDKIIKFEGCYHGHADMFLVKAGSGVATLGLPSSPGVPKK 173 (427)
T ss_dssp HHHHHHHHSTTC-SEEEEESSHHHHHHHHHHHHHHHH--CCCEEEEETTCCCCSCGGGCSSCCHHHHHTTCCSCSSSCHH
T ss_pred HHHHHHhhCCcc-ccccccCCcHHHHHHHHHHHHHhc--CCCeEEEEecccccCcceeeeecCCcccccCCCCCCCCccc
Confidence 445667766432 34666788998999877 566565 56777754 45664322111 11000
Q ss_pred --CCCeEEEEeCchhhhc-cC---CCEeEEEEEc-CCCCeeecc----HHHHHHHHHhCCcEEEEEecCccccCCCCCCc
Q 001989 278 --GFDIKVVVSDLKDIDY-KS---GDVCGVLVQY-PGTEGEVLD----YGDFIKNAHANGVKVVMATDLLALTILKPPGE 346 (985)
Q Consensus 278 --~~gi~v~~v~~~~l~~-l~---~~t~~V~v~~-pn~~G~v~d----i~~I~~~a~~~galliV~a~~~~lg~l~~~~~ 346 (985)
...+...+.+++++++ +. +++++|++.- ...-|.+.+ +++|.++|+++|+++|+| +.. .|. . -+.
T Consensus 174 ~~~~~~~~~~~~~~~le~~~~~~~~~iaavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~~~llI~D-Ev~-tG~-r-~g~ 249 (427)
T d2gsaa_ 174 TTANTLTTPYNDLEAVKALFAENPGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFD-EVM-TGF-R-IAY 249 (427)
T ss_dssp HHTTEEEECTTCHHHHHHHHTTSTTTEEEEEECSSBCSSSCBCCCTTHHHHHHHHHHHTTCEEEEE-CTT-TBT-T-TBT
T ss_pred CccceeccCcchHHHHHHHHHhCCCCeEEEEEcCCcCCCCCccCCHHHHHHHHHHHHHhceeeeec-ccc-ccc-e-ecc
Confidence 0111122223455665 43 5788888753 255688876 999999999999999994 333 232 1 132
Q ss_pred ------cc--ceEEEecCccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCC
Q 001989 347 ------LG--ADIVVGSAQRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATS 418 (985)
Q Consensus 347 ------~G--aDi~v~s~k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~ats 418 (985)
+| .||++. +|.++ .|-|.++ +.+++++.+.+.+ ... + ...+|.
T Consensus 250 ~~~~~~~gi~PDi~~~-gK~lg----gG~p~~a-~~~~~~i~~~~~~----------~~~-~------------~~~~T~ 300 (427)
T d2gsaa_ 250 GGVQEKFGVTPDLTTL-GKIIG----GGLPVGA-YGGKREIMQLVAP----------AGP-M------------YQAGTL 300 (427)
T ss_dssp TCHHHHTTCCCSEEEE-CGGGG----TTSCCEE-EEECHHHHTTBTT----------TSS-B------------CCCCTT
T ss_pred cchHHhcCCCHHHHhh-hhccC----CCcceee-eeehHHHHHHhcc----------cCC-C------------cCCCCC
Confidence 22 488654 46775 3446645 5678887765521 000 0 011121
Q ss_pred CccchhHHHHHHHHH-HHHHhCcchHHHHHHHHHHHHHHHHHHHhcC----CC-eEEcCCCCcceEEEe-----------
Q 001989 419 NICTAQALLANMAAM-YAVYHGPEGLKTIAQRVHGLAGTFALGLKKL----GT-VEVQGLPFFDTVKVK----------- 481 (985)
Q Consensus 419 ni~t~~~l~a~~aa~-~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~----g~-~~~~~~~~~~~~~~~----------- 481 (985)
+..++ +++|++ .+..+..++ +.++..++.++|++.|+++ +. ..+......-.+.+.
T Consensus 301 ---~gnpl-a~AAala~Le~i~~~~---l~~~~~~~g~~l~~~L~~l~~~~~~~~~v~~~ggm~~i~~~~~~v~~~~~~~ 373 (427)
T d2gsaa_ 301 ---SGNPL-AMTAGIKTLELLRQPG---TYEYLDQITKRLSDGLLAIAQETGHAACGGQVSGMFGFFFTEGPVHNYEDAK 373 (427)
T ss_dssp ---TTCHH-HHHHHHHHHHHHTSTT---HHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEETTEEEEESSSCCCCSHHHHT
T ss_pred ---CCCch-hhHHHHHhhHHhhhhh---HHhhhhHHHHHHHHHHHHHHhhcCCCcEEcccCCeEEEEEeccCCCCHHHhh
Confidence 11222 222222 346665544 4455666677777777543 20 111110000011110
Q ss_pred cCC---HHHHHHHHHHcCceeeeecCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 482 CAD---AHAIASAAYKIEMNLRVVDSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 482 ~~~---~~~v~~~L~~~GI~~~~~~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
..+ ...+.+.|.++||.+....... +.+...+|++|||+++++|++
T Consensus 374 ~~d~~~~~~~~~~ll~~Gv~l~p~~~~~--~~~~l~~Te~dId~~l~al~~ 422 (427)
T d2gsaa_ 374 KSDLQKFSRFHRGMLEQGIYLAPSQFEA--GFTSLAHTEEDIDATLAAART 422 (427)
T ss_dssp TSCHHHHHHHHHHHHHTTEECCSSTTSC--EECCTTCCHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHCCEEECCCCCcc--eeCCCCCCHHHHHHHHHHHHH
Confidence 011 3457778889999876532222 235677899999999999974
|
| >d1zoda1 c.67.1.4 (A:3-433) Dialkylglycine decarboxylase {Pseudomonas cepacia [TaxId: 292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Dialkylglycine decarboxylase species: Pseudomonas cepacia [TaxId: 292]
Probab=98.39 E-value=2.1e-05 Score=88.23 Aligned_cols=276 Identities=16% Similarity=0.199 Sum_probs=146.0
Q ss_pred HHHHHHHHhcCCCCcceeeccchHHHHHHHH-HHhhhhcCCCCEEEE-cCCCChhHHHHHHHhhc---------CCCeEE
Q 001989 215 NFQTMIADLTGLPMSNASLLDEGTAAAEAMA-MCNNIQKGKKKTFII-ASNCHPQTIDICITRAD---------GFDIKV 283 (985)
Q Consensus 215 e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~-~a~~~~~~~g~~Vlv-~~~~H~s~~~~~~~~a~---------~~gi~v 283 (985)
++-+.+++++......+.+.++||.++|+++ +|+.++ ++++|+. ...-|......+...-. ..+...
T Consensus 87 ~la~~L~~~~~~~~~~v~f~~sGseA~e~Alk~Ar~~t--~r~~i~~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~ 164 (431)
T d1zoda1 87 DLATRLANITPPGLDRALLLSTGAESNEAAIRMAKLVT--GKYEIVGFAQSWHGMTGAAASATYSAGRKGVGPAAVGSFA 164 (431)
T ss_dssp HHHHHHHHHSCTTCCEEEEESCHHHHHHHHHHHHHHHH--TCCEEEEETTCCCCSSHHHHHTCCSSCCSSSCCCCTTEEE
T ss_pred HHHHHHHHhCCcccceeeecccccchHHHHHHHHHHhc--CCcceeecccccccccchhhcccccccccccCCcccCcee
Confidence 4556778887433445778899999999887 576665 5677764 55667665554421100 011111
Q ss_pred EEeCc---------------hhhh---c-----cCCCEeEEEEEcC-CCCeeecc----HHHHHHHHHhCCcEEEEEecC
Q 001989 284 VVSDL---------------KDID---Y-----KSGDVCGVLVQYP-GTEGEVLD----YGDFIKNAHANGVKVVMATDL 335 (985)
Q Consensus 284 ~~v~~---------------~~l~---~-----l~~~t~~V~v~~p-n~~G~v~d----i~~I~~~a~~~galliV~a~~ 335 (985)
...+. ++++ . ..+++++|++.-- ..-|.+.+ +++|.++|+++|+++|+| +.
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iAavi~EPi~g~~G~~~~~~~yl~~lr~lc~~~gillI~D-EV 243 (431)
T d1zoda1 165 IPAPFTYRPRFERNGAYDYLAELDYAFDLIDRQSSGNLAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILD-EA 243 (431)
T ss_dssp ECCCCTTSCCCEETTEECHHHHHHHHHHHHHHHCCSCEEEEEECSEETTTTCEECCTTHHHHHHHHHHHHTCEEEEE-CT
T ss_pred eeeecccccccccccchhhhhhHHHHHHHHHHhccccccceeeccccccCCccCCCHHHHHHHHHHHHhcCceEEec-cc
Confidence 11110 1111 1 2456788877532 44566654 899999999999999994 33
Q ss_pred cc-ccCCCCC---Cccc--ceEEEecCccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccc
Q 001989 336 LA-LTILKPP---GELG--ADIVVGSAQRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQ 409 (985)
Q Consensus 336 ~~-lg~l~~~---~~~G--aDi~v~s~k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~ 409 (985)
.. +|-.... ..+| .||++. +|.++ .|-|-++++ ++++...... . +..
T Consensus 244 ~tG~gRtG~~~~~~~~gv~PDi~~~-gK~l~----gG~p~~av~-~~~~~~~~~~--------~--~~~----------- 296 (431)
T d1zoda1 244 QTGVGRTGTMFACQRDGVTPDILTL-SKTLG----AGLPLAAIV-TSAAIEERAH--------E--LGY----------- 296 (431)
T ss_dssp TTTTTTTSSSSTHHHHTCCCSEEEE-CHHHH----TTSSCEEEE-ECHHHHHHHH--------H--TTC-----------
T ss_pred cccccccccccccccCCCCcchhcc-ccccc----cccccceee-eeecchhhhh--------c--ccc-----------
Confidence 32 3322111 1133 488664 36664 345655655 4444333220 0 000
Q ss_pred cccccccCCCccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhc----CCCe-EEcCCCCcceEEE--ec
Q 001989 410 HIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKK----LGTV-EVQGLPFFDTVKV--KC 482 (985)
Q Consensus 410 ~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~----~g~~-~~~~~~~~~~~~~--~~ 482 (985)
....|. +..++...++..-+..+..+. +.++..++.+++.+.|.+ .+-+ ++-+.-.+-.+.| ..
T Consensus 297 ---~~~~T~---~g~pl~~aaa~a~l~~i~~~~---~~~~~~~~g~~l~~~l~~~~~~~~~i~~vrG~Glm~~ie~~~~~ 367 (431)
T d1zoda1 297 ---LFYTTH---VSDPLPAAVGLRVLDVVQRDG---LVARANVMGDRLRRGLLDLMERFDCIGDVRGRGLLLGVEIVKDR 367 (431)
T ss_dssp ---CCCCTT---TTCHHHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHHHHHHHHHHCTTEEEEEEETTEEEEEEEEET
T ss_pred ---cccCCC---CCCcchHHHHHHHHHHhhhhh---hhHHHHHHHHHHhhhhhhhhhcCCCeEEEeecceEEEEEEecCC
Confidence 000111 112221111111234443433 344445555555555443 2211 1111111111222 11
Q ss_pred ------CC-HHHHHHHHHHcCceeeee----cCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 483 ------AD-AHAIASAAYKIEMNLRVV----DSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 483 ------~~-~~~v~~~L~~~GI~~~~~----~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
.. +..+.+.+.++|+....+ .++.+|+++....|++|||+++++|.+
T Consensus 368 ~~~~~~~~~~~~i~~~~~~~Gl~~~~~~~~~~~~~i~l~Ppl~it~~eid~~~~~l~~ 425 (431)
T d1zoda1 368 RTKEPADGLGAKITRECMNLGLSMNIVQLPGMGGVFRIAPPLTVSEDEIDLGLSLLGQ 425 (431)
T ss_dssp TTTEECTTHHHHHHHHHHHTTEECCEECCTTSCCEEEECCCTTCCHHHHHHHHHHHHH
T ss_pred cccCccHHHHHHHHHHHHHhCcccCeeeecCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 12 678899999999875432 246899999999999999999999974
|
| >d2q7wa1 c.67.1.1 (A:1-396) Aspartate aminotransferase, AAT {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Escherichia coli [TaxId: 562]
Probab=98.36 E-value=5.4e-06 Score=91.97 Aligned_cols=239 Identities=8% Similarity=0.028 Sum_probs=129.8
Q ss_pred CCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc----------hhhhc----cCCCEeEEEEEcC-CCCeeec---c
Q 001989 253 GKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL----------KDIDY----KSGDVCGVLVQYP-GTEGEVL---D 314 (985)
Q Consensus 253 ~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~----------~~l~~----l~~~t~~V~v~~p-n~~G~v~---d 314 (985)
+++|.|++++-.++.+...++. .|.+++.++. .++.+ ..++++++++.+| |.+|.+. .
T Consensus 118 ~~gd~Vlvp~P~y~~y~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~P~NPTG~~~s~e~ 193 (396)
T d2q7wa1 118 TSVKRVWVSNPSWPNHKSVFNS----AGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFHGCCHNPTGIDPTLEQ 193 (396)
T ss_dssp SCCCEEEEEESCCTHHHHHHHH----TTCEEEEEECEETTTTEECHHHHHHHHTTCCTTCEEEEECSSCTTTCCCCCHHH
T ss_pred ccceEEEEecCCCccchHHHHH----cCCeeEecccccccccccccchHHHHHHHhccCcEEEEecCCcCCcCeecCHHH
Confidence 4899999999999998888753 5778877654 11111 4567788888888 8999876 4
Q ss_pred HHHHHHHHHhCCcEEEEEecCccccCCCC---C------Cccc-ceEEEecC-ccccccCCCCCCcEEEEEEchhhHhcC
Q 001989 315 YGDFIKNAHANGVKVVMATDLLALTILKP---P------GELG-ADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMM 383 (985)
Q Consensus 315 i~~I~~~a~~~galliV~a~~~~lg~l~~---~------~~~G-aDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~l 383 (985)
+++|+++|++++++++.|.-...+. ... + .+.+ -.+++.+. |+++.| |--+|++.+.....+.+
T Consensus 194 ~~~l~~la~~~~~~ii~De~Y~~l~-~~~~~~~~~~~~~~~~~~~~~~~~s~sk~~~~~----G~R~G~~~~~~~~~~~~ 268 (396)
T d2q7wa1 194 WQTLAQLSVEKGWLPLFDFAYQGFA-RGLEEDAEGLRAFAAMHKELIVASSYSKNFGLY----NERVGACTLVAADSETV 268 (396)
T ss_dssp HHHHHHHHHHHTCEEEEEESCTTSS-SCHHHHTHHHHHHHHHCSCEEEEEECTTTTTCG----GGCCEEEEEECSSHHHH
T ss_pred HHHHHHHHhcCCeEEEEeccccccc-cCCccCchHhhhhhhhccccccccccccccccc----CCCccccccchhHHHHH
Confidence 7899999999999998853111221 110 0 0112 23344444 887643 23467877655433321
Q ss_pred CCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHH----HHHhCcchHHHHHHHHHHHHHHHHH
Q 001989 384 PGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMY----AVYHGPEGLKTIAQRVHGLAGTFAL 459 (985)
Q Consensus 384 p~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~----l~~~g~~Gl~~i~~~~~~~a~~l~~ 459 (985)
. . . .+.........+.|++.......+.+. ......+-++++.++..++.+.+.+
T Consensus 269 ~------------~--~-------~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~ 327 (396)
T d2q7wa1 269 D------------R--A-------FSQMKAAIRANYSNPPAHGASVVATILSNDALRAIWEQELTDMRQRIQRMRQLFVN 327 (396)
T ss_dssp H------------H--H-------HHHHHHHHHTTTSSCCHHHHHHHHHHHTSHHHHHHHHHHHHHC-CHHHHHHHHHHH
T ss_pred H------------H--h-------hhhhhhhhhccccCCCHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 0 0 000000001122232222211112110 0111223456667777788889999
Q ss_pred HHhcCCCeEE-cC--CCCcceEEEecCCHHHHHHHHH-HcCceeeeecCCeEEEEeccCCCHHHHHHHHHHHh
Q 001989 460 GLKKLGTVEV-QG--LPFFDTVKVKCADAHAIASAAY-KIEMNLRVVDSNTVTASFDETTTLEDVDKLFIVFA 528 (985)
Q Consensus 460 ~L~~~g~~~~-~~--~~~~~~~~~~~~~~~~v~~~L~-~~GI~~~~~~~~~lris~t~~~t~edId~li~aL~ 528 (985)
.|+++| ... +. .+...-|.+ .+-..+.+++|. ++||++-. ++ |+++.-. ++++|+++++++.
T Consensus 328 ~L~~~~-~~~~~~~~~~~~G~F~~-~~l~~e~~~~L~~e~gV~~~~--g~--Ri~~a~l-~~~~i~~~~~ai~ 393 (396)
T d2q7wa1 328 TLQEKG-ANRDFSFIIKQNGMFSF-SGLTKEQVLRLREEFGVYAVA--SG--RVNVAGM-TPDNMAPLCEAIV 393 (396)
T ss_dssp HHHHTT-CCSCCTHHHHCCSSEEE-CCCCHHHHHHHHHHHCEECCT--TC--EEEGGGC-CTTTHHHHHHHHH
T ss_pred HHHHhC-CCCCcceecCCCeEEEe-eCCCHHHHHHHHHhCCEEECC--CC--EEEecCC-CHHHHHHHHHHHH
Confidence 999886 221 00 011112433 222234455554 57997632 23 8887643 4667999998886
|
| >d3tata_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Escherichia coli [TaxId: 562]
Probab=98.27 E-value=1.6e-06 Score=96.44 Aligned_cols=149 Identities=12% Similarity=0.088 Sum_probs=92.2
Q ss_pred cCCCCCCC-----CCcHHHHHH---HHhCCccccccCCChhhHhhhHHHHHHHHHHHHHHhcCC------CCcceeeccc
Q 001989 171 IGMGYYNT-----HVPPVILRN---IMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGL------PMSNASLLDE 236 (985)
Q Consensus 171 lG~g~y~~-----~~p~~v~~~---i~~~~~~~t~~~pyq~e~sqg~l~~i~e~q~~ia~L~g~------~~~~~sl~~~ 236 (985)
||-|.|.- .+++.|.++ +...+.....|+|.+ |. -++++.+|+++.- +..++....+
T Consensus 31 L~iG~~~d~~g~~p~~~~V~~A~~~l~~~~~~~~~Y~p~~-----G~----~~lR~aia~~~~~~~~~~~~~~~i~~~~~ 101 (397)
T d3tata_ 31 LSIGLYYNEDGIIPQLQAVAEAEARLNAQPHGASLYLPME-----GL----NCYRHAIAPLLFGADHPVLKQQRVATIQT 101 (397)
T ss_dssp CSCCSCCCTTSSCCCCHHHHHHHHHHTTSCCSSBCCCCTT-----CC----HHHHHHHHHHHTCSSCHHHHTTCEEECCB
T ss_pred ccCCCCcCCCCCCCCcHHHHHHHHHHHhCcccCCCCCCcc-----cC----HHHHHHHHHHHhhccCCcCCcCcEEEecC
Confidence 56775431 244555433 233444455676643 33 3467788877642 2334544444
Q ss_pred hHHHH-HHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCch----------hhhc----cCCCEeEE
Q 001989 237 GTAAA-EAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDLK----------DIDY----KSGDVCGV 301 (985)
Q Consensus 237 ~ta~~-ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~~----------~l~~----l~~~t~~V 301 (985)
++++. .++.+.......+||+|++++-.++.+...++ ..|.+++.++++ ++.+ ..++++++
T Consensus 102 ~~~~~~~~l~~~~~~~~~pgd~Vlv~~P~y~~y~~~~~----~~G~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (397)
T d3tata_ 102 LGGSGALKVGADFLKRYFPESGVWVSDPTWENHVAIFA----GAGFEVSTYPWYDEATNGVRFNDLLATLKTLPARSIVL 177 (397)
T ss_dssp SHHHHHHHHHHHHHHHHCSSCCCEECSSCCTTHHHHHH----TTTCCCEECCCCCTTTSSCCHHHHHHHHTTCCSSCCCE
T ss_pred chhHHHHHHHHHHhhhcCCCCcceecccCccccHHHHH----HcCCEEEEEecchhhccccchHHHHHHhhhcccccEEE
Confidence 43322 22222221112489999999999999998875 457888887651 1111 34567777
Q ss_pred EEEcC-CCCeeec---cHHHHHHHHHhCCcEEEEE
Q 001989 302 LVQYP-GTEGEVL---DYGDFIKNAHANGVKVVMA 332 (985)
Q Consensus 302 ~v~~p-n~~G~v~---di~~I~~~a~~~galliV~ 332 (985)
++.+| |.+|.+. .+++|+++|++++++++.|
T Consensus 178 ~~~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~D 212 (397)
T d3tata_ 178 LHPCCHNPTGADLTNDQWDAVIEILKARELIPFLD 212 (397)
T ss_dssp ECSSSCSSSCCCCCHHHHHHHHHHHHHTTCCCEEC
T ss_pred EecCCCCCCCeeCCHHHHHHHHHHHhhcCeeEEee
Confidence 77777 8999885 5789999999999999883
|
| >d2ay1a_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Paracoccus denitrificans [TaxId: 266]
Probab=98.27 E-value=1.3e-05 Score=88.48 Aligned_cols=242 Identities=7% Similarity=-0.003 Sum_probs=129.7
Q ss_pred CCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc----------hhhhc----cCCCEeEEEEEcC-CCCeeec---c
Q 001989 253 GKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL----------KDIDY----KSGDVCGVLVQYP-GTEGEVL---D 314 (985)
Q Consensus 253 ~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~----------~~l~~----l~~~t~~V~v~~p-n~~G~v~---d 314 (985)
++||+|++++-.++.+...++. .|.+++.++. +++++ ..+++.++++.+| |++|.+. .
T Consensus 115 ~~gd~V~~p~p~~~~y~~~~~~----~g~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p~NPTG~~~s~e~ 190 (394)
T d2ay1a_ 115 NPDLRVFVSDPTWPNHVSIMNF----MGLPVQTYRYFDAETRGVDFEGMKADLAAAKKGDMVLLHGCCHNPTGANLTLDQ 190 (394)
T ss_dssp CTTCCEEEEESCCHHHHHHHHH----HTCCEEEEECEETTTTEECHHHHHHHHHTCCTTCEEEEESSSCTTTCCCCCHHH
T ss_pred CCceEEEEecccccchHHHHHH----cCCEEEEecccchhcccccchhHHHHHhhcccCcEEEEeCCCCCCCCCCCCHHH
Confidence 4899999999999999888764 3666666643 11222 3556777777777 8999875 5
Q ss_pred HHHHHHHHHhCCcEEEEEecCccccCCCC--------CCcccceEE--EecCccccccCCCCCCcEEEEEEchhhHhcCC
Q 001989 315 YGDFIKNAHANGVKVVMATDLLALTILKP--------PGELGADIV--VGSAQRFGVPMGYGGPHAAFLATSQEYKRMMP 384 (985)
Q Consensus 315 i~~I~~~a~~~galliV~a~~~~lg~l~~--------~~~~GaDi~--v~s~k~lg~P~~~GGP~~G~l~~~~~~~~~lp 384 (985)
+++|+++|++++++++.|.-...+..-.. ....+.+++ .+.+|+++.| |-.+|++.+.....+...
T Consensus 191 ~~~l~~la~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~sk~~~~~----G~R~G~~~~~~~~~~~~~ 266 (394)
T d2ay1a_ 191 WAEIASILEKTGALPLIDLAYQGFGDGLEEDAAGTRLIASRIPEVLIAASCSKNFGIY----RERTGCLLALCADAATRE 266 (394)
T ss_dssp HHHHHHHHHHHTCEEEEEECCTTSSSCHHHHHHHHHHHHHHCSSEEEEEECTTTTTCG----GGCEEEEEEECSSHHHHH
T ss_pred HHHHHHHhhcceEEEEEeccchhhcccccccchhhhhhhhhcccccccccccccccCC----cccccchhhchhHHHHHH
Confidence 89999999999999988532112211000 001122233 3334877643 224577766544332210
Q ss_pred CceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHH----HHHhCcchHHHHHHHHHHHHHHHHHH
Q 001989 385 GRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMY----AVYHGPEGLKTIAQRVHGLAGTFALG 460 (985)
Q Consensus 385 ~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~----l~~~g~~Gl~~i~~~~~~~a~~l~~~ 460 (985)
- ..+.......+.+.|++....+..+.++ +.-...+-++.+.++..++.+.+.+.
T Consensus 267 ~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~~l~~~ 325 (394)
T d2ay1a_ 267 L---------------------AQGAMAFLNRQTYSFPPFHGAKIVSTVLTTPELRADWMAELEAVRSGMLRLREQLAGE 325 (394)
T ss_dssp H---------------------HHHHHHHHHHTTTSSCCCHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred H---------------------hhhhhHhhhcccccchhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 0011111111222333232222222221 11111234556677777788888888
Q ss_pred HhcCCCeEEcC--CCCcceEEEecCCHHHHHHHHH-HcCceeeeecCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 461 LKKLGTVEVQG--LPFFDTVKVKCADAHAIASAAY-KIEMNLRVVDSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 461 L~~~g~~~~~~--~~~~~~~~~~~~~~~~v~~~L~-~~GI~~~~~~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
|+++|+-.-+. .+...-|.+ .+-..+..++|. ++||++-. + .|+++.- -++++|++++++|.+
T Consensus 326 L~~~~~~~~~~~~~~~~G~F~~-~~ls~~~~~~L~~~~~V~~~~---g-~Ri~~a~-l~~~~i~~l~~ai~~ 391 (394)
T d2ay1a_ 326 LRDLSGSDRFGFVAEHRGMFSR-LGATPEQVKRIKEEFGIYMVG---D-SRINIAG-LNDNTIPILARAIIE 391 (394)
T ss_dssp HHHHHTSSTTTHHHHCCSSEEE-CCCCHHHHHHHHHHHCEECCT---T-CEEEGGG-CCTTTHHHHHHHHHH
T ss_pred HHHhCCCCceeeECCCceeEEe-cCcCHHHHHHHHHhCCEEecC---C-CEEEecC-CCHHHHHHHHHHHHH
Confidence 88764110000 011112332 222334456665 66997643 2 4888764 355788999888863
|
| >d1yaaa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]
Probab=98.26 E-value=9.4e-06 Score=90.55 Aligned_cols=245 Identities=10% Similarity=0.017 Sum_probs=130.7
Q ss_pred CCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc----------hhhhc----cCCCEeEEEEEcC-CCCeeec---c
Q 001989 253 GKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL----------KDIDY----KSGDVCGVLVQYP-GTEGEVL---D 314 (985)
Q Consensus 253 ~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~----------~~l~~----l~~~t~~V~v~~p-n~~G~v~---d 314 (985)
.+||+|++++-.++.+...++ ..|.+++.++. +.++. ..+.++++++.+| |++|.+. .
T Consensus 122 ~~gd~Vlip~P~~~~y~~~~~----~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~P~NPTG~~~s~~~ 197 (412)
T d1yaaa_ 122 FPDKLVYLSKPTWANHMAIFE----NQGLKTATYPYWANETKSLDLNGFLNAIQKAPEGSIFVLHSCAHNPTGLDPTSEQ 197 (412)
T ss_dssp CTTCCEEEEESCCTTHHHHHH----TTTCCEEEEECEETTTTEECHHHHHHHHHHSCTTCEEEEECSSCTTTCCCCCHHH
T ss_pred CCCCEEecccccCchhHHHHH----HcCCceecccccccccccccchhhhcccccCCCceEEEEecCCCCCccccCCHHH
Confidence 489999999999998888764 45777777653 12222 3456777888887 8999886 5
Q ss_pred HHHHHHHHHhCCcEEEEEecCccccCCC---CC---------Ccccc-eEEEecC-ccccccCCCCCCcEEEEEEchhhH
Q 001989 315 YGDFIKNAHANGVKVVMATDLLALTILK---PP---------GELGA-DIVVGSA-QRFGVPMGYGGPHAAFLATSQEYK 380 (985)
Q Consensus 315 i~~I~~~a~~~galliV~a~~~~lg~l~---~~---------~~~Ga-Di~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~ 380 (985)
+++|+++|++++++++.|.-...+..-. .+ ....- -|++.|. |+++.| |=-+|++++..+..
T Consensus 198 ~~~i~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~----G~RiG~~~~~~~~~ 273 (412)
T d1yaaa_ 198 WVQIVDAIASKNHIALFDTAYQGFATGDLDKDAYAVRLGVEKLSTVSPVFVCQSFAKNAGMY----GERVGCFHLALTKQ 273 (412)
T ss_dssp HHHHHHHHHHTTCEEEEEESCTTTSSSCHHHHTHHHHHHHHHTTTTCCEEEEEECTTTSCCG----GGCEEEEEEECCSC
T ss_pred HHHHHhhhccCCEEEeecceeeecccCCcccchhhhhhhhhccccCCCeEEEEecCCccccC----cCceEEEEEchhhh
Confidence 8999999999999998853221221100 00 01112 2555565 888653 22468887765433
Q ss_pred hcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHHH----HhCcchHHHHHHHHHHHHHH
Q 001989 381 RMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAV----YHGPEGLKTIAQRVHGLAGT 456 (985)
Q Consensus 381 ~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~----~~g~~Gl~~i~~~~~~~a~~ 456 (985)
+.+... +..+ ....+.-..+...|++.....+++.++-. -...+-++.+.++..++.+.
T Consensus 274 ~~~~~~----------~~~~-------~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~ 336 (412)
T d1yaaa_ 274 AQNKTI----------KPAV-------TSQLAKIIRSEVSNPPAYGAKIVAKLLETPELTEQWHKDMVTMSSRITKMRHA 336 (412)
T ss_dssp TTHHHH----------HHHH-------HHHHHHHHHTTTSSCCHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHH----------HHHH-------HHHHHHHHHHHhcCCChHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 221000 0000 00000111122333333222222221100 00112345666777778888
Q ss_pred HHHHHhcCCCeEE-cC--CCCcceEEEecCCHHHHHHHH-HHcCceeeeecCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 457 FALGLKKLGTVEV-QG--LPFFDTVKVKCADAHAIASAA-YKIEMNLRVVDSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 457 l~~~L~~~g~~~~-~~--~~~~~~~~~~~~~~~~v~~~L-~~~GI~~~~~~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
+.+.|+++| ... +. .+...-|.+ .+-..+..++| .++||++-. + .|+++.- .+++.||++++++.+
T Consensus 337 l~~~L~~~g-~~~~~~~~~~~gG~F~~-~~ls~e~~~~L~~e~~V~~~~---g-~Ris~~g-~~~~~i~~l~~ai~~ 406 (412)
T d1yaaa_ 337 LRDHLVKLG-TPGNWDHIVNQCGMFSF-TGLTPQMVKRLEETHAVYLVA---S-GRASIAG-LNQGNVEYVAKAIDE 406 (412)
T ss_dssp HHHHHHHHT-CSSCCTHHHHCCSSEEE-CCCCHHHHHHHHHHHCEECCT---T-SEEEGGG-CCTTTHHHHHHHHHH
T ss_pred HHHHHHHhC-CCCCCceeCCCceEEEe-cCcCHHHHHHHHHhCCEEECC---C-CEEEecc-CCHHHHHHHHHHHHH
Confidence 889898875 211 11 011111332 22223445566 466887642 2 4888754 345578888888763
|
| >d1ohwa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.21 E-value=2e-05 Score=89.02 Aligned_cols=189 Identities=12% Similarity=0.099 Sum_probs=108.3
Q ss_pred CCCEeEEEEEcC-CCCeeecc----HHHHHHHHHhCCcEEEEEecCc-cccCCCC---CCccc----ceEEEecCccccc
Q 001989 295 SGDVCGVLVQYP-GTEGEVLD----YGDFIKNAHANGVKVVMATDLL-ALTILKP---PGELG----ADIVVGSAQRFGV 361 (985)
Q Consensus 295 ~~~t~~V~v~~p-n~~G~v~d----i~~I~~~a~~~galliV~a~~~-~lg~l~~---~~~~G----aDi~v~s~k~lg~ 361 (985)
.+++++|++.-- ..-|.+.+ +++|.++|+++|+++|+| +.. ++|-... -..+| .||++. +|.+++
T Consensus 246 ~~~iAavivEPi~g~~G~~~~~~~fl~~lr~lc~~~gillI~D-EV~tG~gRtG~~~~~e~~gi~~~PDiv~~-gK~l~~ 323 (461)
T d1ohwa_ 246 KKTVAGIIVEPIQSEGGDNHASDDFFRKLRDISRKHGCAFLVD-EVQTGGGSTGKFWAHEHWGLDDPADVMTF-SKKMMT 323 (461)
T ss_dssp TCCEEEEEECSSBCTTTCBCCCHHHHHHHHHHHHHTTCEEEEE-CTTTCSSTTSSSSGGGGGCCSSCCSEEEE-CGGGSS
T ss_pred CCccceeeeccccccccccCchhhHHHHHHHHHHhhCcceecc-ccccccccccccccccccccccCchhhhh-hhcccc
Confidence 357888887643 44566543 899999999999999995 332 3432211 12234 477643 365531
Q ss_pred cCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcc
Q 001989 362 PMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPE 441 (985)
Q Consensus 362 P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~ 441 (985)
|++..+..+...-+ +. ..+|.. .++.+..+..++ +..+..+
T Consensus 324 ---------g~~~~~~~~~~~~~-----------~~----------------~~~T~~-g~p~~~aaa~a~--l~~i~~~ 364 (461)
T d1ohwa_ 324 ---------GGFFHKEEFRPNAP-----------YR----------------IFNTWL-GDPSKNLLLAEV--INIIKRE 364 (461)
T ss_dssp ---------EEEEECGGGSCSST-----------TS----------------SCCSCS-SCHHHHHHHHHH--HHHHHHT
T ss_pred ---------cccccccccccccc-----------cc----------------cccccc-cccccchhhccc--chhhhhh
Confidence 22333332211110 00 011111 111112122222 3555443
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcCC-----Ce-EEcCCCCcceEEEecCC---HHHHHHHHHHcCceeeeecCCeEEEEec
Q 001989 442 GLKTIAQRVHGLAGTFALGLKKLG-----TV-EVQGLPFFDTVKVKCAD---AHAIASAAYKIEMNLRVVDSNTVTASFD 512 (985)
Q Consensus 442 Gl~~i~~~~~~~a~~l~~~L~~~g-----~~-~~~~~~~~~~~~~~~~~---~~~v~~~L~~~GI~~~~~~~~~lris~t 512 (985)
++.++..++.++|+++|+++- .+ ++-+.- --+.|.+++ +.++.+.|.++|+.+....+..||+.+.
T Consensus 365 ---~l~~~~~~~g~~l~~~l~~l~~~~~~~i~~vrG~G--l~~~ie~~~~~~~~~i~~~~~~~Gll~~~~~~~~ir~~Pp 439 (461)
T d1ohwa_ 365 ---DLLSNAAHAGKVLLTGLLDLQARYPQFISRVRGRG--TFCSFDTPDESIRNKLISIARNKGVMLGGCGDKSIRFRPT 439 (461)
T ss_dssp ---THHHHHHHHHHHHHHHHHHHHHHCTTTCEEEEEET--TEEEEECSSHHHHHHHHHHHHHTTEECEEETTTEEECCCC
T ss_pred ---hHHHHHHHHHHHHHHHHHHHHhhCCCceEEeeeee--EEEEEEcCCHHHHHHHHHHHHHCCeEEeeCCCCEEEEeCC
Confidence 355666677788888877641 01 111100 023455554 6789999999999987766788999999
Q ss_pred cCCCHHHHHHHHHHHhC
Q 001989 513 ETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 513 ~~~t~edId~li~aL~~ 529 (985)
..-|++|||.++++|.+
T Consensus 440 L~it~~eid~~~~~l~~ 456 (461)
T d1ohwa_ 440 LVFRDHHAHLFLNIFSD 456 (461)
T ss_dssp TTCCHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHH
Confidence 99999999999999874
|