Citrus Sinensis ID: 002008

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980---
Protein Sequence
MHPFLMRSYLWWCILLGYLYVSTLSFSSGQYLDRAIQSGNWLHDLGSDLKDDFKSTTLNFVEISILPSQLNDSVSCGDLEGVGSLNTTCLLNSNLYLNYDLYIYGTGNLEILPKISIVCPVEGCKITFNMSGNINMGQYAAIVAGSVVVSAANLTMDLNSSINTTSLGGLPPSPTSGTPVGYDGAGGGHGGRGASCHKNNKTSFWGGDVYAWSTLSEPWSYGSKGGGTSAEYQYGGNGGGRIKLLVKDMLYLNGSVTAEGGDGGLKGGGGSGGSIYVLAVKLKGYGFISAAGGRGWGGGGGGRVSLDCYSIQEDIKVTVHGGFSIGCPENAGAAGTNFNAYLRSLRVSNDNVTTETETPLLDFPTRPIWSNVFVENNAKVLVPLLWTRVQVRGQISLYRGGSIIFGLSEYPVSEFELVAEELLMSDSVIKVFGAFRVAIKMLLMWNSKILIDGGGNTIVTTSVLEVRNLVVLTENSVISSNANLGLYGQGLLQLTGQGDAIKGQRLSLSLFYNITVGTGSLLQAPLDDDASRNVVTESLCKRQTCPIDLINPPDDCHVNYTLSFSLQICRVEDIVVSGLIKGSIVHIQRARTIIVDTYGMIIASELGCSEGMGKGIYSHGAGSGAGHGGRGGSGFFNGRLINGGHKYGNADLPCELGSGAEGPNESYAPAIGGGMIVMGSIQWPLFRLDIYGSVKADGESVGKKTINGNSSLIGGLGGGSGGTILLFLQELTLEDNSSVSVVGGSGGPPGGGGGGGGRVHFHWSKIDSGVEYVPVATISGSINSSGGAADNTGLFGEVGTVTGKKCPKGLYGTFCKECPIGTYKDMEGSDESLCTPCSLELLPRRANFIYVRGGVSQPFCPYECISEKYRMPKCYTPLEELMYTFGGPWPFVLLLSCILVLLALLLSTLRIKLVGSSPSYREHSIERHSRHHFPYLLSLSEVRGTRAEETQSHVHRMYFMGPNTFREPWHLPYSPPNAIIEIV
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHHHHHHcEEccccccccccccccccccccccccccccccccccccccccccccccccccEEcccccccccccEEEEEEEEEEcccEEEEccccEEEcccEEEEcccccEEEEEEEEEEEEEcccEEEEEEEEEEEEEEEEEccccEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEcEEEEEEEEEEEEcccccccccccccccEEEEEEEEEEEEEEEcccccccccccccEEEEEEccccccEEEEEEcccccccccccccccEEEEcccccEEEEcccccccccccccccccccccccEEEEEEEEEEEEEEEEEEEEEEEEEEEEcEEEEEcccccccccEEEHHHHHcccccEEEEEcHHEEEEEEEEEEccEEEEEcccEEEEEEEEEEEEEEEEEEcccEEEccccEEEEccEEEEEcccccEEEEcEEEEEEEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEccccEEEEccccccccccccccccccccccccccccccccccccEEcccccccccccccccccccccccccccccccccEEEEcEEccccEEEEEEEEEEEccccccccccccccccccccccccccEEEEEEEEEEEccccEEEEEcccccccccccccccEEEEEEEccccccccEEEEcEEcEEEccccccccccccccccEEEEcccccccccccccccccccEEcccccccccccccccccccccccEEEEEcccccccccEEEccccccccccccHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccEEEEEEEccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHEEEcEEEEEEEEEcccccccccccccccccccccccccccccccccEEEEEEccccccccccHHHccccccccEEEEEEEEEEEcccEEEEEccEEEEcccEEEEEccccEEEEEEEEcEEEEcccEEEEEEEEEEEEEEEEEccccEEEEccccccccccccccccccccccccccccccEEEEccccccccccEEEHHHccccccccccccccccEcccccccccEEEEEEEEEEEEcEEEEEcccccccccccccccEEEEEEEEEEccEEEEEccccccccccccEEEEEEEEcccccEEEEEccccccccccccccccEEcccccEEEEEccccccccccccccccccccccEEEEEcccEEEEEEEEEEEEEEEEEEEEcccEEEEcccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccEEEEcccccEEEEEEEEEEcEEEEEEcccEEEEcccccEccccEEEccccccHHHHHEEEEHEEEEEEEccccEEEccccccccccccccHccccccccHHHccccccccccccccEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEccccEEEEccccccccccccEEccccccccccccccccEEEcccEEcccccccccccccEccccccccccccccccccEEEEEcccccccccEEEEEEEEEccccccccccccccccccccccccHHHHHHHHHHHHHccccEEEEEcccccccccccccccEEEEEEccccccccEEEEEEEEEEEEEccccccccccccccccEccccccccccEEEEcccccccEEccccccHHHcccccccccccccEEEEEcccccccccccEEccccccccccccHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHccccEEEEEEcccccccccccccccccHHHHHHc
Coil and Loop (DISEMBL)
MHPFLMRSYLWWCILLGYLYVStlsfssgqyLDRAIQSgnwlhdlgsdlkddfksttlNFVEISilpsqlndsvscgdlegvgslnttcllnsnlylnydlyiygtgnleilpkisivcpvegckitfnmsgninmGQYAAIVAGSVVVSAANLTMDLnssinttslgglppsptsgtpvgydgaggghggrgaschknnktsfwggDVYAWStlsepwsygskgggtsaeyqyggngggRIKLLVKDMLYlngsvtaeggdgglkggggsggSIYVLAVKLKGYgfisaaggrgwggggggrvsldcysiqedikvtvhggfsigcpenagaagtNFNAYLRSLRvsndnvttetetplldfptrpiwsnvfvENNAKVLVPLLWTRVQVRGQIslyrggsiifglseypvsefELVAEELLMSDSVIKVFGAFRVAIKMLLMWNSKIlidgggntiVTTSVLEVRNLVVLTENSvissnanlglygqgllqltgqgdaikgqrLSLSLFYNItvgtgsllqapldddasrnvVTESlckrqtcpidlinppddchvnytlSFSLQICRVEDIVVSGLIKGSIVHIQRARTIIVDTYGMIIASelgcsegmgkgiyshgagsgaghggrggsgffngrlingghkygnadlpcelgsgaegpnesyapaigggmivmgsiqwplfrldiygsvkadgesvgkktingnssligglgggsgGTILLFLQEltlednssvsvvggsggppggggggggrvhfhwskidsgveyvpvatisgsinssggaadntglfgevgtvtgkkcpkglygtfckecpigtykdmegsdeslctpcslellprranfiyvrggvsqpfcpyecisekyrmpkcytpleelmytfggpwPFVLLLSCILVLLALLLSTLRIKlvgsspsyrehsierhsrhhfpyllslsevrgtraeetqSHVHRmyfmgpntfrepwhlpysppnaiieiv
Flexible Loop (DISEMBL)
MHPFLMRSYLWWCILLGYLYVSTLSFSSGQYLDRAIQSGNWLHDLGSDLKDDFKSTTLNFVEISILPSQLNDSVSCGDLEGVGSLNTTCLLNSNLYLNYDLYIYGTGNLEILPKISIVCPVEGCKITFNMSGNINMGQYAAIVAGSVVVSAANLTMDLNSSINTTSLGGLPPSPTSGTPVGYDGAGGGHGGRGASCHKNNKTSFWGGDVYAWSTLSEPWSYGSKGGGTSAEYQYGGNGGGRIKLLVKDMLYLNGSVTAEGGDGGLKGGGGSGGSIYVLAVKLKGYGFISAAGGRGWGGGGGGRVSLDCYSIQEDIKVTVHGGFSIGCPENAGAAGTNFNAYLRSLRVSNDNVTTEtetplldfptrpIWSNVFVENNAKVLVPLLWTRVQVRGQISLYRGGSIIFGLSEYPVSEFELVAEELLMSDSVIKVFGAFRVAIKMLLMWNSKILIDGGGNTIVTTSVLEVRNLVVLTENSVISSNANLGLYGQGLLQLTGQGDAIKGQRLSLSLFYNITVGTGSllqapldddaSRNVVTESLckrqtcpidlinppdDCHVNYTLSFSLQICRVEDIVVSGLIKGSIVHIQRARTIIVDTYGMIIASELGCSEGMGKGIYSHGAGSGAGHGGRGGSGFFNGRLINGGHKYGNADLPCELGSGAEGPNESYAPAIGGGMIVMGSIQWPLFRLDIYGSVKADGESVGKKTINGNSSLIGGLGGGSGGTILLFLQELTLEDNSSVSVVGGSGGPPGGGGGGGGRVHFHWSKIDSGVEYVPVATISGSinssggaadntGLFGEVGTVtgkkcpkglygTFCKECPIGTYKDMEGSDESLCTPCSLELLPRRANFIYVrggvsqpfcPYECISEKYRMPKCYTPLEELMYTFGGPWPFVLLLSCILVLLALLLSTLRIKLVGsspsyrehsierhsrhhfpylLSLSEVRGTRAEETQSHVHRMYFMGPNTFREPWHLPYSPPNAIIEIV
Low Complexity Region (SEG)
MHPFLMRSYLWWCILLGYLYVSTLSFSSGQYLDRAIQSGNWLHDLGSDLKDDFKSTTLNFVEISILPSQLNDSVSCGDLEGVGSlnttcllnsnlylnydlyiyGTGNLEILPKISIVCPVEGCKITFNMSGNINMGQYaaivagsvvvsaaNLTMDLNSSINttslgglppsptsgtpVgydgaggghggrgASCHKNNKTSFWGGDVYAWSTLSEPWSYGSKGGGTSAEYQYGGNGGGRIKLLVKDMLYLNGSVTAEggdgglkggggsggSIYVLAVKLKGYGFISAAggrgwggggggrVSLDCYSIQEDIKVTVHGGFSIGCPENAGAAGTNFNAYLRSLRVSNDNVTTETETPLLDFPTRPIWSNVFVENNAKVLVPLLWTRVQVRGQISLYRGGSIIFGLSEYPVSEFELVAEELLMSDSVIKVFGAFRVAIKMLLMWNSKILIDGGGNTIVTTSVLEVRNLVVLTENSVISSNANlglygqgllqltgqgDAIKGQRLSLSLFYNITVGTGSLLQAPLDDDASRNVVTESLCKRQTCPIDLINPPDDCHVNYTLSFSLQICRVEDIVVSGLIKGSIVHIQRARTIIVDTYGMIIASELGCSEGMGKGIYShgagsgaghggrggsgffngrLINGGHKYGNADLPCELGSGAEGPNESYAPAIGGGMIVMGSIQWPLFRLDIYGSVKADGESVGKKTingnssligglgggsggTILLFLQELTLEDNssvsvvggsggppggggggggRVHFHWSKIDSGVEYVPVATisgsinssggAADNTGLFGEVGTVTGKKCPKGLYGTFCKECPIGTYKDMEGSDESLCTPCSLELLPRRANFIYVRGGVSQPFCPYECISEKYRMPKCYTPLEELMYTFGGPWPFVlllscilvllalllstlriklVGSSPSYrehsierhsrhhFPYLLSLSEVRGTRAEETQSHVHRMYFMGPNTFREPWHLPYSPPNAIIEIV
Disordered region (IsUnstruct)
***FLMRSYLWWCILLGYLYVSTLSFSSGQYLDRAIQSGNWL***************LNFVEISILPSQLNDSVSCGDLEGVGSLNTTCLLNSNLYLNYDLYIYGTGNLEILPKISIVCPVEGCKITFNMSGNINMGQYAAIVAGSVVVSAANLTMDLN***************************************NNKTSFWGGDVYAWSTLSEPWSYGSKGGGTSAEYQYGGNGGGRIKLLVKDMLYLNGSV******************IYVLAVKLKGYGFISAA**************LDCYSIQEDIKVTVHGGFSIGCPENAGAAGTNFNAYLRSLRVSNDNVTTETETPLLDFPTRPIWSNVFVENNAKVLVPLLWTRVQVRGQISLYRGGSIIFGLSEYPVSEFELVAEELLMSDSVIKVFGAFRVAIKMLLMWNSKILIDGGGNTIVTTSVLEVRNLVVLTENSVISSNANLGLYGQGLLQLTGQGDAIKGQRLSLSLFYNITVGTGSLLQAPLDDDASRNVVTESLCKRQTCPIDLINPPDDCHVNYTLSFSLQICRVEDIVVSGLIKGSIVHIQRARTIIVDTYGMIIASELGCSEGMGKGIYSHGAGSGAGHGGRGGSGFFNGRLINGGHKYGNADLPCELG********SYAPAIGGGMIVMGSIQWPLFRLDIYGSVKADGESVGKKTINGNSSLIGGLGGGSGGTILLFLQELTL**************************HFHWSKIDSGVEYVPVATISGSINSSGGAADNTGLFGEVGTVTGKKCPKGLYGTFCKECPIGTYKDMEGSDESLCTPCSLELLPRRANFIYVRGGVSQPFCPYECISEKYRMPKCYTPLEELMYTFGGPWPFVLLLSCILVLLALLLSTLRIKLVGS*************RHHFPYLLSLSEV**********HVHRMYFMGPNTFREPWHLPYS*********
Disordered Region (DISOPRED)
*HPFLMRSYLWWCILLGYLYVSTLSFSSGQYLDRAIQSGNWLHDLGSDLK***********************VSCGDLEGVGSLNTTCLLNSNLYLNYDLYIYGTGNLEILPKISIVCPVEGCKITFNMSGNINMGQYAAIVAGSVVVSAANLTMDLNSSINTTSLGGLPP*****************************TSFWGGDVYAWSTLSEPW******************GGGRIKLLVKDMLYLNGSVTAE**************SIYVLAVKLKGYGFI*************GRVSLDCYSIQEDIKVTVHGGFSIGCPENAGAAGTNFNAYLRSLRVSNDNVTTETETPLLDFPTRPIWSNVFVENNAKVLVPLLWTRVQVRGQISLYRGGSIIFGLSEYPVSEFELVAEELLMSDSVIKVFGAFRVAIKMLLMWNSKILIDGGGNTIVTTSVLEVRNLVVLTENSVISSNANLGLYGQGLLQLTGQGDAIKGQRLSLSLFYNITVGTGSLLQ***********VTESLCKRQTCPIDLINPPDDCHVNYTLSFSLQICRVEDIVVSGLIKGSIVHIQRARTIIVDTYGMIIASELGCSEGM*********************GFFNGRLINGGHKYGNADLPC******************GGMIVMGSIQWPLFRLDIYGSV**************************GGTILLFLQELTLEDNS******************GGRVHFHWSKIDSGVEYVPVATISGSI****************GTVTGKKCPKGLYGTFCKECPIGTYKDMEGSDESLCTPCSLELLPRRANFIYVRGGVSQPFCPYECISEKYRMPKCYTPLEELMYTFGGPWPFVLLLSCILVLLALLLSTLRIK*********************************RAEETQSHVHRMYFMGPNTFREPWHLPYSPP***IEIV
Disordered Region (DISEMBL)
MHPFLMRSYLWWCILLGYLYVSTLSFSSGQYLDRAIQSGNWLHDLGSDLKDDFKSTTLNFVEISILPSQLNDSVSCGDLEGVGSLNTTCLLNSNLYLNYDLYIYGTGNLEILPKISIVCPVEGCKITFNMSGNINMGQYAAIVAGSVVVSAANLTMDLNSSINTTSLGGLPPSPTSGTPVGYDGAGGGHGGRGASCHKNNKTSFWGGDVYAWSTLSEPWSYGSKGGGTSAEYQYGGNGGGRIKLLVKDMLYLNGSVTAEGGDGGLKGGGGSGGSIYVLAVKLKGYGFISAAGGRGWGGGGGGRVSLDCYSIQEDIKVTVHGGFSIGCPENAGAAGTNFNAYLRSLRVSNDNVTTETETPLLDFPTRPIWSNVFVENNAKVLVPLLWTRVQVRGQISLYRGGSIIFGLSEYPVSEFELVAEELLMSDSVIKVFGAFRVAIKMLLMWNSKILIDGGGNTIVTTSVLEVRNLVVLTENSVISSNANLGLYGQGLLQLTGQGDAIKGQRLSLSLFYNITVGTGSLLQAPLDDDASRNVVTESLCKRQTCPIDLINPPDDCHVNYTLSFSLQICRVEDIVVSGLIKGSIVHIQRARTIIVDTYGMIIASELGCSEGMGKGIYSHGAGSGAGHGGRGGSGFFNGRLINGGHKYGNADLPCELGSGAEGPNESYAPAIGGGMIVMGSIQWPLFRLDIYGSVKADGESVGKKTINGNSSLIGGLGGGSGGTILLFLQELTLEDNSSVSVVGGSGGPPGGGGGGGGRVHFHWSKIDSGVEYVPVATISGSINSSGGAADNTGLFGEVGTVTGKKCPKGLYGTFCKECPIGTYKDMEGSDESLCTPCSLELLPRRANFIYVRGGVSQPFCPYECISEKYRMPKCYTPLEELMYTFGGPWPFVLLLSCILVLLALLLSTLRIKLVGSSPSYREHSIERHSRHHFPYLLSLSEVRGTRAEETQSHVHRMYFMGPNTFREPWHLPYSPPNAIIEIV
Disordered Region (DISPRO)
*HPFLMRSYLWWCILLGYLYVSTLSFSSGQYLDRAIQSGNWLHDLGSDLKDDFKSTTLNFVEISILPSQLNDSVSCGDLEGVGSLNTTCLLNSNLYLNYDLYIYGTGNLEILPKISIVCPVEGCKITFNMSGNINMGQYAAIVAGSVVVSAANLTMDLNSSINTTSLGGLPPSPTSGTPVGYDGAGGGHGGRGASCHKNNKTSFWGGDVYAWSTLSEPWSYGSKGGGTSAEYQYGGNGGGRIKLLVKDMLYLNGSVTAEGGDGGLKGGGGSGGSIYVLAVKLKGYGFISAAGGRGWGGGGGGRVSLDCYSIQEDIKVTVHGGFSIGCPENAGAAGTNFNAYLRSLRVSNDNVTTETETPLLDFPTRPIWSNVFVENNAKVLVPLLWTRVQVRGQISLYRGGSIIFGLSEYPVSEFELVAEELLMSDSVIKVFGAFRVAIKMLLMWNSKILIDGGGNTIVTTSVLEVRNLVVLTENSVISSNANLGLYGQGLLQLTGQGDAIKGQRLSLSLFYNITVGTGSLLQAPLDDDASRNVVTESLCKRQTCPIDLINPPDDCHVNYTLSFSLQICRVEDIVVSGLIKGSIVHIQRARTIIVDTYGMIIASELGCSEGMGKGIYSHGAGSGAGHGGRGGSGFFNGRLINGGHKYGNADLPCELGS***********AIGGGMIVMGSIQWPLFRLDIYGSVKADGESVG****************GSGGTILLFLQELTLEDNSSVSVVGGSGGPPGGGGGGGGRVHFHWSKIDSGVEYVPVATISGSINSSGGAADNTGLFGEVGTVTGKKCPKGLYGTFCKECPIGTYKDMEGSDESLCTPCSLELLPRRANFIYVRGGVSQPFCPYECISEKYRMPKCYTPLEELMYTFGGPWPFVLLLSCILVLLALLLSTLRIKLVGSS************RHHFPYLLSLSEVRGTRAEETQSHVHRMYFMGPNTFREPWHLPYSPPNAIIEIV
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MHPFLMRSYLWWCILLGYLYVSTLSFSSGQYLDRAIQSGNWLHDLGSDLKDDFKSTTLNFVEISILPSQLNDSVSCGDLEGVGSLNTTCLLNSNLYLNYDLYIYGTGNLEILPKISIVCPVEGCKITFNMSGNINMGQYAAIVAGSVVVSAANLTMDLNSSINTTSLGGLPPSPTSGTPVGYDGAGGGHGGRGASCHKNNKTSFWGGDVYAWSTLSEPWSYGSKGGGTSAEYQYGGNGGGRIKLLVKDMLYLNGSVTAEGGDGGLKGGGGSGGSIYVLAVKLKGYGFISAAGGRGWGGGGGGRVSLDCYSIQEDIKVTVHGGFSIGCPENAGAAGTNFNAYLRSLRVSNDNVTTETETPLLDFPTRPIWSNVFVENNAKVLVPLLWTRVQVRGQISLYRGGSIIFGLSEYPVSEFELVAEELLMSDSVIKVFGAFRVAIKMLLMWNSKILIDGGGNTIVTTSVLEVRNLVVLTENSVISSNANLGLYGQGLLQLTGQGDAIKGQRLSLSLFYNITVGTGSLLQAPLDDDASRNVVTESLCKRQTCPIDLINPPDDCHVNYTLSFSLQICRVEDIVVSGLIKGSIVHIQRARTIIVDTYGMIIASELGCSEGMGKGIYSHGAGSGAGHGGRGGSGFFNGRLINGGHKYGNADLPCELGSGAEGPNESYAPAIGGGMIVMGSIQWPLFRLDIYGSVKADGESVGKKTINGNSSLIGGLGGGSGGTILLFLQELTLEDNSSVSVVGGSGGPPGGGGGGGGRVHFHWSKIDSGVEYVPVATISGSINSSGGAADNTGLFGEVGTVTGKKCPKGLYGTFCKECPIGTYKDMEGSDESLCTPCSLELLPRRANFIYVRGGVSQPFCPYECISEKYRMPKCYTPLEELMYTFGGPWPFVLLLSCILVLLALLLSTLRIKLVGSSPSYREHSIERHSRHHFPYLLSLSEVRGTRAEETQSHVHRMYFMGPNTFREPWHLPYSPPNAIIEIV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	983
224138820	1442	predicted protein [Populus trichocarpa]	0.990	0.675	0.776	0.0
224126383	1337	predicted protein [Populus trichocarpa]	0.924	0.679	0.794	0.0
449461585	1440	PREDICTED: uncharacterized protein LOC10	0.977	0.667	0.743	0.0
449510816	1575	PREDICTED: LOW QUALITY PROTEIN: uncharac	0.977	0.610	0.742	0.0
356495572	1452	PREDICTED: uncharacterized protein LOC10	0.998	0.676	0.745	0.0
357482273	1458	hypothetical protein MTR_5g013800 [Medic	0.987	0.665	0.710	0.0
356540575	1443	PREDICTED: uncharacterized protein LOC10	0.993	0.677	0.750	0.0
297742170	1294	unnamed protein product [Vitis vinifera]	0.840	0.638	0.803	0.0
334188236	1421	uncharacterized protein [Arabidopsis tha	0.925	0.640	0.721	0.0
297794531	1417	glycine-rich protein [Arabidopsis lyrata	0.969	0.672	0.686	0.0

>gi|224138820|ref|XP_002326698.1| predicted protein [Populus trichocarpa] gi|222834020|gb|EEE72497.1| predicted protein [Populus trichocarpa]

 Score = 1298 bits (3360), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 760/979 (77%), Positives = 850/979 (86%), Gaps = 5/979 (0%)

Query: 6   MRSYLWWCILLGYLYVSTLSFSSGQYLDRAIQSGNWLHDLGSDLKDDFKSTTLNFVEISI 65
           M+  L+ CILLG+   ST+SF+ GQY    I SGN LH  GS   +  +S T ++V+   
Sbjct: 1   MQWQLFCCILLGFFCASTISFAPGQYEGGGIWSGNGLHSSGSVSSNHSRSGTSSYVKTLK 60

Query: 66  LPSQLNDSVSCGDLEGVGSLNTTCLLNSNLYLNYDLYIYGTGNLEILPKISIVCPVEGCK 125
               LN SVSC +LEGVGSLNTTC++NSNLYLN DLYIYGTGNLEI+P +SIVCP+EGC 
Sbjct: 61  FSLPLNSSVSCEELEGVGSLNTTCVVNSNLYLNSDLYIYGTGNLEIIPHVSIVCPIEGCM 120

Query: 126 ITFNMSGNINMGQYAAIVAGSVVVSAANLTMDLNSSINTTSLGGLPPSPTSGTPVGYDGA 185
           +T NM+GN+N+GQ+AAI+AGSVV SAANLTMD +SSINTT+LGG PP  TSGTPVG DG 
Sbjct: 121 VTVNMTGNVNIGQHAAIIAGSVVFSAANLTMDSHSSINTTALGGSPPPQTSGTPVGDDGG 180

Query: 186 GGGHGGRGASCHKNNKTSFWGGDVYAWSTLSEPWSYGSKGGGTSAEYQYGGNGGGRIKLL 245
           GGGHGGRGASC K NKTS WGGDVYAWSTL+EPWSYGSKGGGTS++ + GGNGGGR+KL 
Sbjct: 181 GGGHGGRGASCLKRNKTSNWGGDVYAWSTLAEPWSYGSKGGGTSSQNKCGGNGGGRVKLQ 240

Query: 246 VKDMLYLNGSVTAEGGDGGLKGGGGSGGSIYVLAVKLKGYGFISAAGGRGWGGGGGGRVS 305
           VK++LYLNGSV AEGGDGGL GGGGSGGSI+V A    GYG ISAAGGRGWGGGGGGRVS
Sbjct: 241 VKEILYLNGSVAAEGGDGGLNGGGGSGGSIFVHA----GYGTISAAGGRGWGGGGGGRVS 296

Query: 306 LDCYSIQEDIKVTVHGGFSIGCPENAGAAGTNFNAYLRSLRVSNDNVTTETETPLLDFPT 365
           LDCYSIQED+KVTVHGG SIGCP NAGAAGT FNA L SLRVSND V TETETPLLDFPT
Sbjct: 297 LDCYSIQEDVKVTVHGGLSIGCPGNAGAAGTFFNADLLSLRVSNDYVMTETETPLLDFPT 356

Query: 366 RPIWSNVFVENNAKVLVPLLWTRVQV-RGQISLYRGGSIIFGLSEYPVSEFELVAEELLM 424
             +WSNVFVEN AKVLVPL+W+RVQV RGQISLYRGGSI+FGLSE+PVSEFELVAEELLM
Sbjct: 357 MTLWSNVFVENYAKVLVPLVWSRVQVVRGQISLYRGGSIVFGLSEFPVSEFELVAEELLM 416

Query: 425 SDSVIKVFGAFRVAIKMLLMWNSKILIDGGGNTIVTTSVLEVRNLVVLTENSVISSNANL 484
           SDS+IKVFGAFRVAIKMLLMWNSKI IDGGGNT+VT SVLEVRNL+VL   SV+ SNANL
Sbjct: 417 SDSIIKVFGAFRVAIKMLLMWNSKIEIDGGGNTVVTASVLEVRNLIVLRAGSVLGSNANL 476

Query: 485 GLYGQGLLQLTGQGDAIKGQRLSLSLFYNITVGTGSLLQAPLDDDASRNVVTESLCKRQT 544
           GLYGQGLL+LTG GD I+GQRLSLSLFYNITVG GSLLQAPLDDDASR+VVT+SLC+  T
Sbjct: 477 GLYGQGLLKLTGHGDTIRGQRLSLSLFYNITVGPGSLLQAPLDDDASRSVVTKSLCESHT 536

Query: 545 CPIDLINPPDDCHVNYTLSFSLQICRVEDIVVSGLIKGSIVHIQRARTIIVDTYGMIIAS 604
           CPIDLI PPDDCHVNYTLSFSLQICRVE ++V+G+IKGSI+HI RARTII+DT G+I AS
Sbjct: 537 CPIDLITPPDDCHVNYTLSFSLQICRVEGLLVNGIIKGSIIHIHRARTIIIDTDGLITAS 596

Query: 605 ELGCSEGMGKGIYSHGAGSGAGHGGRGGSGFFNGRLINGGHKYGNADLPCELGSGAEGPN 664
           ELGC++G+GKG YS GAGSGAGHGGRGGSG FNG + NGG+KYGNADLPCELGSG +GPN
Sbjct: 597 ELGCNDGIGKGNYSKGAGSGAGHGGRGGSGCFNGIVSNGGNKYGNADLPCELGSGTQGPN 656

Query: 665 ESYAPAIGGGMIVMGSIQWPLFRLDIYGSVKADGESVGKKTINGNSSLIGGLGGGSGGTI 724
           +SY   IGGGMIVMGSIQWPL RL++YGS+  DG+S  K ++N N+SLIGGLGG SGGT+
Sbjct: 657 QSYGNVIGGGMIVMGSIQWPLLRLNLYGSLMVDGQSFDKASVNSNASLIGGLGGASGGTV 716

Query: 725 LLFLQELTLEDNSSVSVVGGSGGPPGGGGGGGGRVHFHWSKIDSGVEYVPVATISGSINS 784
           LLFLQEL L + SS+SV GG+G P GGGGGGGGRVHFHW KID+G EYVPVA+ISGSINS
Sbjct: 717 LLFLQELMLAEKSSLSVRGGNGSPLGGGGGGGGRVHFHWYKIDTGDEYVPVASISGSINS 776

Query: 785 SGGAADNTGLFGEVGTVTGKKCPKGLYGTFCKECPIGTYKDMEGSDESLCTPCSLELLPR 844
           SGGA +N GLFGE GTVTGKKCPKGLYGTFCKECP+GT+KD++GSDESLC PCSL+LLP 
Sbjct: 777 SGGAGENGGLFGEEGTVTGKKCPKGLYGTFCKECPLGTFKDVDGSDESLCIPCSLDLLPN 836

Query: 845 RANFIYVRGGVSQPFCPYECISEKYRMPKCYTPLEELMYTFGGPWPFVLLLSCILVLLAL 904
           RANFI+VRGGVSQP CPY+CIS+KYRMP CYTPLEEL+YTFGGPWPF L+LS +LVLLAL
Sbjct: 837 RANFIHVRGGVSQPSCPYKCISDKYRMPNCYTPLEELVYTFGGPWPFALILSVLLVLLAL 896

Query: 905 LLSTLRIKLVGSSPSYREHSIERHSRHHFPYLLSLSEVRGTRAEETQSHVHRMYFMGPNT 964
           LLST RIKLVGS   Y   S+E  S HHFP+LLSLSEVRGTRAEE+QSHV+RMYFMGPNT
Sbjct: 897 LLSTARIKLVGSGKCYDASSVEHQSHHHFPHLLSLSEVRGTRAEESQSHVYRMYFMGPNT 956

Query: 965 FREPWHLPYSPPNAIIEIV 983
           FREPWHLPY  PNAIIEIV
Sbjct: 957 FREPWHLPYFLPNAIIEIV 975

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224126383|ref|XP_002329540.1| predicted protein [Populus trichocarpa] gi|222870249|gb|EEF07380.1| predicted protein [Populus trichocarpa]

 Score = 1273 bits (3295), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 727/915 (79%), Positives = 813/915 (88%), Gaps = 6/915 (0%)

Query: 70  LNDSVSCGDLEGVGSLNTTCLLNSNLYLNYDLYIYGTGNLEILPKISIVCPVEGCKITFN 129
           LN SVSC DLEGVGS +TTCL+NSNLYLN DLYIYGTGNLEILP +SI CP+EGC +T N
Sbjct: 2   LNSSVSCEDLEGVGSFDTTCLVNSNLYLNSDLYIYGTGNLEILPHVSIACPIEGCMVTIN 61

Query: 130 MSGNINMGQYAAIVAGSVVVSAANLTMDLNSSINTTSLGGLPPSPTSGTPVGYDGAGGGH 189
           M+GN+N+GQYA IVAGSVV + ANLTMD +SSINTT+LGG PP  TSGTPVG DG GGGH
Sbjct: 62  MTGNVNIGQYATIVAGSVVFAVANLTMDSHSSINTTALGGSPPPQTSGTPVGDDGGGGGH 121

Query: 190 GGRGASCHKNNKTSFWGGDVYAWSTLSEPWSYGSKGGGTSAEYQYGGNGGGRIKLLVKDM 249
           GGRGASC K NKTS WGGDVYAWSTL+EPWSYGSKGGGTS+  ++GGNGGGRIK+ VK++
Sbjct: 122 GGRGASCLKRNKTSNWGGDVYAWSTLAEPWSYGSKGGGTSSRNKFGGNGGGRIKIQVKEI 181

Query: 250 LYLNGSVTAEGGDGGLKGGGGSGGSIYVLAVKLKGYGFISAAGGRGWGGGGGGRVSLDCY 309
           + LNGS+ AEGGDGGL GGGGSGGSI+V AVKLKGYG ISAAGGRGWGGGGGGR+SLDCY
Sbjct: 182 VCLNGSIAAEGGDGGLIGGGGSGGSIFVHAVKLKGYGTISAAGGRGWGGGGGGRISLDCY 241

Query: 310 SIQEDIKVTVHGGFSIGCPENAGAAGTNFNAYLRSLRVSNDNVTTETETPLLDFPTRPIW 369
           SIQED+KVTVHGG SIGCP NAGAAGT FNA L SLRVSND V TETETPLLDFPT  +W
Sbjct: 242 SIQEDVKVTVHGGLSIGCPGNAGAAGTFFNADLLSLRVSNDYVMTETETPLLDFPTTILW 301

Query: 370 SNVFVENNAKVLVPLLWTRVQV-RGQISLYRGGSIIFGLSEYPVSEFELVAEELLMSDSV 428
           SNVFVEN AKVLVPL+W+R+QV RGQISLY GGSI+FGLSE+PVSEFELVAEELLMSDS+
Sbjct: 302 SNVFVENYAKVLVPLVWSRIQVVRGQISLYHGGSIVFGLSEFPVSEFELVAEELLMSDSI 361

Query: 429 IKVFGAFRVAIKMLLMWNSKILIDGGGNTIVTTSVLEVRNLVVLTENSVISSNANLGLYG 488
           IKVFGAFRVAIKMLLMWNSKI IDGGGNTIVT SVLEVRNL+VLT  SV+SSN+NLGLYG
Sbjct: 362 IKVFGAFRVAIKMLLMWNSKIEIDGGGNTIVTASVLEVRNLIVLTAGSVLSSNSNLGLYG 421

Query: 489 QGLLQLTGQGDAIKGQRLSLSLFYNITVGTGSLLQAPLDDDASRNVVTESLCKRQTCPID 548
           QGLL+LTG GD I+GQRLSLSLFYNITVG GSL+QAPLDD+ASR++VT+SLC+ QTCPID
Sbjct: 422 QGLLKLTGHGDTIRGQRLSLSLFYNITVGPGSLVQAPLDDNASRSLVTKSLCESQTCPID 481

Query: 549 LINPPDDCHVNYTLSFSLQICRVEDIVVSGLIKGSIVHIQRARTIIVDTYGMIIASELGC 608
           LI PPDDCHVNYTLSFSLQ     D++V+G++KGSI+HI RARTII+D  G+I ASELGC
Sbjct: 482 LITPPDDCHVNYTLSFSLQ-----DLLVNGIVKGSIIHIHRARTIIIDADGLITASELGC 536

Query: 609 SEGMGKGIYSHGAGSGAGHGGRGGSGFFNGRLINGGHKYGNADLPCELGSGAEGPNESYA 668
           S G+GKG YS GAGSGAGHGGRGGSG FNG + NGG+KYG ADLPCELGSG EGPN+SY 
Sbjct: 537 SGGIGKGNYSKGAGSGAGHGGRGGSGCFNGIVSNGGNKYGKADLPCELGSGTEGPNQSYG 596

Query: 669 PAIGGGMIVMGSIQWPLFRLDIYGSVKADGESVGKKTINGNSSLIGGLGGGSGGTILLFL 728
             IGGGMIVMGSIQWPL +L++YGS++ DG+S  K +IN N+SLIGGLGGGSGGT+L+FL
Sbjct: 597 NVIGGGMIVMGSIQWPLLKLNLYGSLRVDGQSFDKASINSNASLIGGLGGGSGGTVLVFL 656

Query: 729 QELTLEDNSSVSVVGGSGGPPGGGGGGGGRVHFHWSKIDSGVEYVPVATISGSINSSGGA 788
           QEL L +NSS+SV GG+G P GGGGGGGGRVHFHW KID G EYVPVA+ISGSIN SGGA
Sbjct: 657 QELMLAENSSLSVRGGNGSPLGGGGGGGGRVHFHWYKIDIGDEYVPVASISGSINRSGGA 716

Query: 789 ADNTGLFGEVGTVTGKKCPKGLYGTFCKECPIGTYKDMEGSDESLCTPCSLELLPRRANF 848
            +N GLFGE GTVTGKKCPKGLYGTFCKECP+GT+KD++GSDESLC PCSL+LLP RANF
Sbjct: 717 GENGGLFGEEGTVTGKKCPKGLYGTFCKECPLGTFKDVDGSDESLCIPCSLDLLPNRANF 776

Query: 849 IYVRGGVSQPFCPYECISEKYRMPKCYTPLEELMYTFGGPWPFVLLLSCILVLLALLLST 908
           IYVRGGV++P CPY+CIS+KYRMP CYTPLEEL+YTFGGPWPF L+LS +LVLLALLLST
Sbjct: 777 IYVRGGVNEPSCPYKCISDKYRMPNCYTPLEELVYTFGGPWPFALILSFLLVLLALLLST 836

Query: 909 LRIKLVGSSPSYREHSIERHSRHHFPYLLSLSEVRGTRAEETQSHVHRMYFMGPNTFREP 968
           +R+KLVGS   Y   S+E  S HHFP+LLSLSEVRGTRAEE+QSHV+RMYFMGPNTFREP
Sbjct: 837 VRVKLVGSGSCYGASSVEHQSHHHFPHLLSLSEVRGTRAEESQSHVYRMYFMGPNTFREP 896

Query: 969 WHLPYSPPNAIIEIV 983
           WHLPYSPPNAIIEIV
Sbjct: 897 WHLPYSPPNAIIEIV 911

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449461585|ref|XP_004148522.1| PREDICTED: uncharacterized protein LOC101208985 [Cucumis sativus]

 Score = 1241 bits (3211), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 723/973 (74%), Positives = 819/973 (84%), Gaps = 12/973 (1%)

Query: 14  ILLGYLYVSTLSFSSGQYLDRAIQSGNWLHDLGSDLKDDFKSTTLN-FVEIS-ILPSQLN 71
           I+ G LY+S +S +S QY     +SGN      +DL+ +F+  T N    IS IL S  +
Sbjct: 14  IVWGCLYMSVISLNSLQY-----ESGN---VFSNDLQHEFRPVTGNGSRNISPILFSSSS 65

Query: 72  DSVSCGDLEGVGSLNTTCLLNSNLYLNYDLYIYGTGNLEILPKISIVCPVEGCKITFNMS 131
             VSC DL GVGS NTTCLLN+NL L  D YI GTGNLEILP ++I CP+EGC IT NMS
Sbjct: 66  HFVSCEDLGGVGSFNTTCLLNTNLSLYSDFYISGTGNLEILPHVAICCPIEGCTITLNMS 125

Query: 132 GNINMGQYAAIVAGSVVVSAANLTMDLNSSINTTSLGGLPPSPTSGTPVGYDGAGGGHGG 191
           GNI +  +A +VAGSVV SAANLTM+ NS INTTSLGG PPS TSGTP GYDG+GGGHGG
Sbjct: 126 GNIKVSHHAGVVAGSVVFSAANLTMEYNSYINTTSLGGAPPSQTSGTPFGYDGSGGGHGG 185

Query: 192 RGASCHKNNKTSFWGGDVYAWSTLSEPWSYGSKGGGTSAEYQYGGNGGGRIKLLVKDMLY 251
           RGASC K+N+TS WGGDVYAWSTLSEPWSYGSKGGG S E  YGG GGGR+KL++  +LY
Sbjct: 186 RGASCFKSNQTSNWGGDVYAWSTLSEPWSYGSKGGGISDEKPYGGLGGGRVKLIIVGVLY 245

Query: 252 LNGSVTAEGGDGGLKGGGGSGGSIYVLAVKLKGYGFISAAGGRGWGGGGGGRVSLDCYSI 311
           LNGS+ AEGGDGG +GGGGSGGSI+V AVKL+G G ISAAGG+GWGGGGGGR+SLDCYSI
Sbjct: 246 LNGSILAEGGDGGSRGGGGSGGSIFVHAVKLRGNGTISAAGGKGWGGGGGGRISLDCYSI 305

Query: 312 QEDIKVTVHGGFSIGCPENAGAAGTNFNAYLRSLRVSNDNVTTETETPLLDFPTRPIWSN 371
           QEDIKVTVHGG SIGC  NAGAAGT FNA L SLRV NDN+TTETETPLLDF T P+WSN
Sbjct: 306 QEDIKVTVHGGISIGCSGNAGAAGTYFNADLLSLRVGNDNLTTETETPLLDFSTSPLWSN 365

Query: 372 VFVENNAKVLVPLLWTRVQVRGQISLYRGGSIIFGLSEYPVSEFELVAEELLMSDSVIKV 431
           VFVENNAK LVPLLWTRVQVRGQI+LY GGSI+FGLSE+P+SEFELVAEELLMSDS+I V
Sbjct: 366 VFVENNAKALVPLLWTRVQVRGQITLYCGGSIVFGLSEFPISEFELVAEELLMSDSIITV 425

Query: 432 FGAFRVAIKMLLMWNSKILIDGGGNTIVTTSVLEVRNLVVLTENSVISSNANLGLYGQGL 491
           FGA RV +KMLLMWNSKIL+DGG NT VT SVLEVRNLVVL +NS ISSN+NLG+YGQGL
Sbjct: 426 FGALRVFVKMLLMWNSKILVDGGRNTFVTASVLEVRNLVVLKQNSSISSNSNLGMYGQGL 485

Query: 492 LQLTGQGDAIKGQRLSLSLFYNITVGTGSLLQAPLDDDASRNVVTESLCKRQTCPIDLIN 551
           L L G+GD IKGQRLSLSLFYNITVGTGSLLQAPLD+D SR++VT+++C  + CP+DL+ 
Sbjct: 486 LHLIGEGDTIKGQRLSLSLFYNITVGTGSLLQAPLDEDESRSLVTKAMCDSEACPLDLLT 545

Query: 552 PPDDCHVNYTLSFSLQICRVEDIVVSGLIKGSIVHIQRARTIIVDTYGMIIASELGCSEG 611
           PPDDCH NYTLSFSLQICRVED++V+G+IKGSI+ I RART+IV+  GMI ASELGC EG
Sbjct: 546 PPDDCHFNYTLSFSLQICRVEDLIVNGIIKGSIIQIHRARTVIVNNTGMITASELGCDEG 605

Query: 612 MGKGIYSHGAGSGAGHGGRGGSGFFNGRLINGGHKYGNADLPCELGSGAEGPNESYAPAI 671
           +GKG YS+GAGSGAGHGGRGGSG+FNG + NGG +YGNA LPCELGSGAEGP+    P  
Sbjct: 606 IGKGNYSNGAGSGAGHGGRGGSGYFNGWVSNGGEEYGNAALPCELGSGAEGPDHFDTPVA 665

Query: 672 GGGMIVMGSIQWPLFRLDIYGSVKADGESVGKKTINGNSSLIGGLGGGSGGTILLFLQEL 731
           GGGMIVMGSIQWPL  L I+GS+ ADG+S  K   N NSS+IGG GGGSGGTILLFLQEL
Sbjct: 666 GGGMIVMGSIQWPLLTLKIFGSLTADGQSFLKVIGNDNSSMIGGHGGGSGGTILLFLQEL 725

Query: 732 TLEDNSSVSVVGGSGGPPGGGGGGGGRVHFHWSKIDSGVEYVPVATISGSINSSGGAADN 791
            L  NSS++V+GG+GG  GGGGGGGGRVHFHWS I  G EY+PVA+ISGSIN+SGGA++ 
Sbjct: 726 ELFRNSSITVIGGNGGSLGGGGGGGGRVHFHWSNIHVGDEYMPVASISGSINNSGGASNK 785

Query: 792 TGLFGEVGTVTGKKCPKGLYGTFCKECPIGTYKDMEGSDESLCTPCSLELLPRRANFIYV 851
            G +G  GT+TGK+CPKGLYGTFC+ECP+GTYKD+EGSD +LC PCSL+LLP RANFIY 
Sbjct: 786 GGSYGRKGTITGKECPKGLYGTFCEECPVGTYKDVEGSDANLCFPCSLDLLPSRANFIYR 845

Query: 852 RGGVSQPFCPYECISEKYRMPKCYTPLEELMYTFGGPWPFVLLLSCILVLLALLLSTLRI 911
           RGGV +PFCPY CISEKYRMP C+TPLEELMYTFGGPWPF ++LSC LVLLA+LLSTLR+
Sbjct: 846 RGGVDRPFCPYRCISEKYRMPNCFTPLEELMYTFGGPWPFSVILSCFLVLLAILLSTLRV 905

Query: 912 KLVGSSPSYRE-HSIERHSRHHFPYLLSLSEVRGTRAEETQSHVHRMYFMGPNTFREPWH 970
           K VG   SYR+  SIE HS  HFP+LLSLSEVRGTRAEETQSHV+RMYFMGPNTFREPWH
Sbjct: 906 KFVGYG-SYRDADSIESHSHRHFPHLLSLSEVRGTRAEETQSHVYRMYFMGPNTFREPWH 964

Query: 971 LPYSPPNAIIEIV 983
           LPYSPPNAIIEIV
Sbjct: 965 LPYSPPNAIIEIV 977

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449510816|ref|XP_004163767.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized LOC101208985 [Cucumis sativus]

 Score = 1239 bits (3206), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 722/973 (74%), Positives = 818/973 (84%), Gaps = 12/973 (1%)

Query: 14  ILLGYLYVSTLSFSSGQYLDRAIQSGNWLHDLGSDLKDDFKSTTLN-FVEIS-ILPSQLN 71
           I+ G LY+S +S +S QY     +SGN      +DL+ +F+  T N    IS IL S  +
Sbjct: 14  IVWGCLYMSVISLNSLQY-----ESGN---VFSNDLQHEFRPVTGNGSRNISPILFSSSS 65

Query: 72  DSVSCGDLEGVGSLNTTCLLNSNLYLNYDLYIYGTGNLEILPKISIVCPVEGCKITFNMS 131
             VSC DL GVGS NTTCLLN+NL L  D YI GTGNLEILP ++I CP+EGC IT NMS
Sbjct: 66  HFVSCEDLGGVGSFNTTCLLNTNLSLYSDFYISGTGNLEILPHVAICCPIEGCTITLNMS 125

Query: 132 GNINMGQYAAIVAGSVVVSAANLTMDLNSSINTTSLGGLPPSPTSGTPVGYDGAGGGHGG 191
           GNI +  +A +VAGSV  SAANLTM+ NS INTTSLGG PPS TSGTP GYDG+GGGHGG
Sbjct: 126 GNIKVSHHAGVVAGSVXFSAANLTMEYNSYINTTSLGGAPPSQTSGTPFGYDGSGGGHGG 185

Query: 192 RGASCHKNNKTSFWGGDVYAWSTLSEPWSYGSKGGGTSAEYQYGGNGGGRIKLLVKDMLY 251
           RGASC K+N+TS WGGDVYAWSTLSEPWSYGSKGGG S E  YGG GGGR+KL++  +LY
Sbjct: 186 RGASCFKSNQTSNWGGDVYAWSTLSEPWSYGSKGGGISDEKPYGGLGGGRVKLIIVGVLY 245

Query: 252 LNGSVTAEGGDGGLKGGGGSGGSIYVLAVKLKGYGFISAAGGRGWGGGGGGRVSLDCYSI 311
           LNGS+ AEGGDGG +GGGGSGGSI+V AVKL+G G ISAAGG+GWGGGGGGR+SLDCYSI
Sbjct: 246 LNGSILAEGGDGGSRGGGGSGGSIFVHAVKLRGNGTISAAGGKGWGGGGGGRISLDCYSI 305

Query: 312 QEDIKVTVHGGFSIGCPENAGAAGTNFNAYLRSLRVSNDNVTTETETPLLDFPTRPIWSN 371
           QEDIKVTVHGG SIGC  NAGAAGT FNA L SLRV NDN+TTETETPLLDF T P+WSN
Sbjct: 306 QEDIKVTVHGGISIGCSGNAGAAGTYFNADLLSLRVGNDNLTTETETPLLDFSTSPLWSN 365

Query: 372 VFVENNAKVLVPLLWTRVQVRGQISLYRGGSIIFGLSEYPVSEFELVAEELLMSDSVIKV 431
           VFVENNAK LVPLLWTRVQVRGQI+LY GGSI+FGLSE+P+SEFELVAEELLMSDS+I V
Sbjct: 366 VFVENNAKALVPLLWTRVQVRGQITLYCGGSIVFGLSEFPISEFELVAEELLMSDSIITV 425

Query: 432 FGAFRVAIKMLLMWNSKILIDGGGNTIVTTSVLEVRNLVVLTENSVISSNANLGLYGQGL 491
           FGA RV +KMLLMWNSKIL+DGG NT VT SVLEVRNLVVL +NS ISSN+NLG+YGQGL
Sbjct: 426 FGALRVFVKMLLMWNSKILVDGGRNTFVTASVLEVRNLVVLKQNSSISSNSNLGMYGQGL 485

Query: 492 LQLTGQGDAIKGQRLSLSLFYNITVGTGSLLQAPLDDDASRNVVTESLCKRQTCPIDLIN 551
           L L G+GD IKGQRLSLSLFYNITVGTGSLLQAPLD+D SR++VT+++C  + CP+DL+ 
Sbjct: 486 LHLIGEGDTIKGQRLSLSLFYNITVGTGSLLQAPLDEDESRSLVTKAMCDSEACPLDLLT 545

Query: 552 PPDDCHVNYTLSFSLQICRVEDIVVSGLIKGSIVHIQRARTIIVDTYGMIIASELGCSEG 611
           PPDDCH NYTLSFSLQICRVED++V+G+IKGSI+ I RART+IV+  GMI ASELGC EG
Sbjct: 546 PPDDCHFNYTLSFSLQICRVEDLIVNGIIKGSIIQIHRARTVIVNNTGMITASELGCDEG 605

Query: 612 MGKGIYSHGAGSGAGHGGRGGSGFFNGRLINGGHKYGNADLPCELGSGAEGPNESYAPAI 671
           +GKG YS+GAGSGAGHGGRGGSG+FNG + NGG +YGNA LPCELGSGAEGP+    P  
Sbjct: 606 IGKGNYSNGAGSGAGHGGRGGSGYFNGWVSNGGEEYGNAALPCELGSGAEGPDHFDTPVA 665

Query: 672 GGGMIVMGSIQWPLFRLDIYGSVKADGESVGKKTINGNSSLIGGLGGGSGGTILLFLQEL 731
           GGGMIVMGSIQWPL  L I+GS+ ADG+S  K   N NSS+IGG GGGSGGTILLFLQEL
Sbjct: 666 GGGMIVMGSIQWPLLTLKIFGSLTADGQSFLKVIGNDNSSMIGGHGGGSGGTILLFLQEL 725

Query: 732 TLEDNSSVSVVGGSGGPPGGGGGGGGRVHFHWSKIDSGVEYVPVATISGSINSSGGAADN 791
            L  NSS++V+GG+GG  GGGGGGGGRVHFHWS I  G EY+PVA+ISGSIN+SGGA++ 
Sbjct: 726 ELFRNSSITVIGGNGGSLGGGGGGGGRVHFHWSNIHVGDEYMPVASISGSINNSGGASNK 785

Query: 792 TGLFGEVGTVTGKKCPKGLYGTFCKECPIGTYKDMEGSDESLCTPCSLELLPRRANFIYV 851
            G +G  GT+TGK+CPKGLYGTFC+ECP+GTYKD+EGSD +LC PCSL+LLP RANFIY 
Sbjct: 786 GGSYGRKGTITGKECPKGLYGTFCEECPVGTYKDVEGSDANLCFPCSLDLLPSRANFIYR 845

Query: 852 RGGVSQPFCPYECISEKYRMPKCYTPLEELMYTFGGPWPFVLLLSCILVLLALLLSTLRI 911
           RGGV +PFCPY CISEKYRMP C+TPLEELMYTFGGPWPF ++LSC LVLLA+LLSTLR+
Sbjct: 846 RGGVDRPFCPYRCISEKYRMPNCFTPLEELMYTFGGPWPFSVILSCFLVLLAILLSTLRV 905

Query: 912 KLVGSSPSYRE-HSIERHSRHHFPYLLSLSEVRGTRAEETQSHVHRMYFMGPNTFREPWH 970
           K VG   SYR+  SIE HS  HFP+LLSLSEVRGTRAEETQSHV+RMYFMGPNTFREPWH
Sbjct: 906 KFVGYG-SYRDADSIESHSHRHFPHLLSLSEVRGTRAEETQSHVYRMYFMGPNTFREPWH 964

Query: 971 LPYSPPNAIIEIV 983
           LPYSPPNAIIEIV
Sbjct: 965 LPYSPPNAIIEIV 977

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356495572|ref|XP_003516649.1| PREDICTED: uncharacterized protein LOC100784489 [Glycine max]

 Score = 1238 bits (3202), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 733/983 (74%), Positives = 833/983 (84%), Gaps = 1/983 (0%)

Query: 1   MHPFLMRSYLWWCILLGYLYVSTLSFSSGQYLDRAIQSGNWLHDLGSDLKDDFKSTTLNF 60
           M   +M   LW CILLGYL +S +S SSG +L+R+    NWL   GS + DD       F
Sbjct: 5   MQFVVMHWNLWCCILLGYLQISCISLSSGHHLNRSTGLENWLGYSGSLVGDDSLLYDSAF 64

Query: 61  VEISILPSQLNDSVSCGDLEGVGSLNTTCLLNSNLYLNYDLYIYGTGNLEILPKISIVCP 120
           VE S     LN+SVSC DLEGVGS NTTCLL+S  YL  D+YIYG GNLEIL  +S++CP
Sbjct: 65  VETSTSSFPLNESVSCEDLEGVGSFNTTCLLSSTHYLKSDIYIYGVGNLEILSDVSLLCP 124

Query: 121 VEGCKITFNMSGNINMGQYAAIVAGSVVVSAANLTMDLNSSINTTSLGGLPPSPTSGTPV 180
           +EGC IT N+SGN+ +GQ A+IV+GSVV+SAANLTM  NS I+++SLGG PPS TSGTPV
Sbjct: 125 MEGCMITVNVSGNVKLGQDASIVSGSVVLSAANLTMGYNSYIDSSSLGGSPPSQTSGTPV 184

Query: 181 GYDGAGGGHGGRGASCHKNNKTSFWGGDVYAWSTLSEPWSYGSKGGGTSAEYQYGGNGGG 240
           G DGAGGGHGGRGASC KNNKT+ WGGDVYAWSTLSEPWSYGSKGGG S + QYGGNGGG
Sbjct: 185 GNDGAGGGHGGRGASCLKNNKTN-WGGDVYAWSTLSEPWSYGSKGGGKSTKKQYGGNGGG 243

Query: 241 RIKLLVKDMLYLNGSVTAEGGDGGLKGGGGSGGSIYVLAVKLKGYGFISAAGGRGWGGGG 300
           R+KLLVKD LY+NGS+TA+GGDGG  GGGGSGGSI V AVKLKGYG ISAAGG GWGGGG
Sbjct: 244 RVKLLVKDTLYVNGSITAKGGDGGSDGGGGSGGSILVHAVKLKGYGIISAAGGTGWGGGG 303

Query: 301 GGRVSLDCYSIQEDIKVTVHGGFSIGCPENAGAAGTNFNAYLRSLRVSNDNVTTETETPL 360
           GGR+SLDCYSIQED+ +TVHGG SIGCP N+GAAGT FNA+L SL+VSNDNVTTETETPL
Sbjct: 304 GGRISLDCYSIQEDLNITVHGGLSIGCPGNSGAAGTYFNAHLLSLKVSNDNVTTETETPL 363

Query: 361 LDFPTRPIWSNVFVENNAKVLVPLLWTRVQVRGQISLYRGGSIIFGLSEYPVSEFELVAE 420
           LDF T P+WSNV+VENNAKVLVPL+W+RVQVRGQIS+Y GGS+IFGLS+YP+SEFELVAE
Sbjct: 364 LDFSTSPLWSNVYVENNAKVLVPLVWSRVQVRGQISVYSGGSLIFGLSDYPISEFELVAE 423

Query: 421 ELLMSDSVIKVFGAFRVAIKMLLMWNSKILIDGGGNTIVTTSVLEVRNLVVLTENSVISS 480
           ELL+SDS+IKVFGAFRV++KMLLMW+S I IDGG +T+VT SVLEVRNL VL +NSVISS
Sbjct: 424 ELLLSDSIIKVFGAFRVSVKMLLMWDSSIQIDGGESTVVTASVLEVRNLAVLRQNSVISS 483

Query: 481 NANLGLYGQGLLQLTGQGDAIKGQRLSLSLFYNITVGTGSLLQAPLDDDASRNVVTESLC 540
           N NL LYGQGLLQLTG GDAIKGQRLSLSLFYN+TVG GSLLQAPLDDDASR  VT+ LC
Sbjct: 484 NTNLALYGQGLLQLTGDGDAIKGQRLSLSLFYNVTVGPGSLLQAPLDDDASRGSVTKHLC 543

Query: 541 KRQTCPIDLINPPDDCHVNYTLSFSLQICRVEDIVVSGLIKGSIVHIQRARTIIVDTYGM 600
             Q CPIDLI PPDDCHVNYTLSFSLQICRVED++V+G++KGSI+HI RART+IVDT GM
Sbjct: 544 DTQRCPIDLITPPDDCHVNYTLSFSLQICRVEDLLVNGIMKGSIIHIHRARTVIVDTDGM 603

Query: 601 IIASELGCSEGMGKGIYSHGAGSGAGHGGRGGSGFFNGRLINGGHKYGNADLPCELGSGA 660
           I ASELGC+EG+GKG + +GAG GAGHGG+GGSG+FNGR   GG +YGNA LPCELGSG 
Sbjct: 604 ITASELGCTEGIGKGNFLNGAGGGAGHGGKGGSGYFNGRESIGGSEYGNAILPCELGSGT 663

Query: 661 EGPNESYAPAIGGGMIVMGSIQWPLFRLDIYGSVKADGESVGKKTINGNSSLIGGLGGGS 720
           EGPNESY   +GGGMIVMGSIQWPL RLD+YGS++ADGES  K   + + S +GGLGGGS
Sbjct: 664 EGPNESYGHVVGGGMIVMGSIQWPLLRLDLYGSLRADGESFSKSIKSSDGSSVGGLGGGS 723

Query: 721 GGTILLFLQELTLEDNSSVSVVGGSGGPPGGGGGGGGRVHFHWSKIDSGVEYVPVATISG 780
           GGT+LLFLQEL L +N  +SVVGG+GGP GGGGGGGGR+HFHWSKI    EYVPVA+I+G
Sbjct: 724 GGTVLLFLQELRLLENPYLSVVGGNGGPVGGGGGGGGRIHFHWSKIGMEEEYVPVASITG 783

Query: 781 SINSSGGAADNTGLFGEVGTVTGKKCPKGLYGTFCKECPIGTYKDMEGSDESLCTPCSLE 840
           S+N+SGGA DN G  G+ GT+TGK CPKGLYG FC+ECPIGTYKD++GSDE LC PC L+
Sbjct: 784 SMNNSGGAGDNDGRHGQEGTITGKACPKGLYGIFCEECPIGTYKDVDGSDEHLCIPCPLD 843

Query: 841 LLPRRANFIYVRGGVSQPFCPYECISEKYRMPKCYTPLEELMYTFGGPWPFVLLLSCILV 900
           LLP RANFIY RGGV++  CPY+CIS+KYRMP CYTPLEEL+YTFGGPWPF +LLS IL+
Sbjct: 844 LLPNRANFIYKRGGVTRRSCPYKCISDKYRMPNCYTPLEELIYTFGGPWPFSVLLSFILL 903

Query: 901 LLALLLSTLRIKLVGSSPSYREHSIERHSRHHFPYLLSLSEVRGTRAEETQSHVHRMYFM 960
           LLALLLSTLR KL+GS   +   SIE H+ H FPYLLSLSEVRG RAEETQSHVHRMYFM
Sbjct: 904 LLALLLSTLRNKLIGSGSYHSSSSIEHHNHHRFPYLLSLSEVRGARAEETQSHVHRMYFM 963

Query: 961 GPNTFREPWHLPYSPPNAIIEIV 983
           GPNTFREPWHLPYSPP+AIIEIV
Sbjct: 964 GPNTFREPWHLPYSPPHAIIEIV 986

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357482273|ref|XP_003611422.1| hypothetical protein MTR_5g013800 [Medicago truncatula] gi|355512757|gb|AES94380.1| hypothetical protein MTR_5g013800 [Medicago truncatula]

 Score = 1216 bits (3146), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 710/999 (71%), Positives = 817/999 (81%), Gaps = 28/999 (2%)

Query: 6   MRSYLWWCILLGYLYVSTLSFSSGQYLDRAIQSGNWLHDLGSDLKDDFKSTTLNFVEISI 65
           M  YLW CILLGYL+   LS  SG  L+ +I     L    S + DD +     F E   
Sbjct: 1   MLKYLWCCILLGYLHTPCLSVCSGHNLNSSIDLELLLGSTESLISDDSQLDDFAFAE--- 57

Query: 66  LPSQLNDSVSCGDLEGVGSLNTTCLLNSNLYLNYDLYIYGTGNLEILPKISIVCPVEGCK 125
               LNDSVSC DLEGVGS NTTCLL+S  YL  D+ IYGTGNLEIL  +S++CPVE C 
Sbjct: 58  ---TLNDSVSCEDLEGVGSFNTTCLLSSTHYLKSDILIYGTGNLEILSHVSLLCPVEECM 114

Query: 126 ITFNMSGNINMGQYAAIVAGSVVVSAANLTMDLNSSINTTSLGGLPPSPTSGTPVGYDGA 185
           IT N+SGNI +GQ ++IVA SV++SAAN+TMD  SSIN++SLGG PPS TSGTPV  +GA
Sbjct: 115 ITVNVSGNIKLGQNSSIVASSVIISAANVTMDYISSINSSSLGGAPPSQTSGTPVNNEGA 174

Query: 186 GGGHGGRGASCHKNNKTSFWGGDVYAWSTLSEPWSYGSKGGGTSAEYQYGGNGGGRIKLL 245
           GGGHGGRGASC K NKT+ WGGDVYAWS+L+EPWSYGSKGGG SAE +YGGNGGGRIKLL
Sbjct: 175 GGGHGGRGASCKKTNKTN-WGGDVYAWSSLAEPWSYGSKGGGKSAEQKYGGNGGGRIKLL 233

Query: 246 VKDMLYLNGSVTAEGGDGGLKGGGGSGGSIYVLAVKLKGYGFISAAGGRGWGGGGGGRVS 305
            KD +YLNGSVTAEGGDGG  GGGGSGGSI V AVKLKGYG ISAAGG GWGGGGGGR+S
Sbjct: 234 AKDTIYLNGSVTAEGGDGGYDGGGGSGGSIIVNAVKLKGYGIISAAGGMGWGGGGGGRIS 293

Query: 306 LDCYSIQEDIKVTVHGGFSIGCPENAGAAGTNFNAYLRSLRVSNDNVTTETETPLLDFPT 365
           L+CYSIQED K+TVHGG SIGC  N+GAAGT FNA L SL+VSNDNV+TETETPLLDF T
Sbjct: 294 LNCYSIQEDFKITVHGGSSIGCTGNSGAAGTYFNANLLSLKVSNDNVSTETETPLLDFST 353

Query: 366 RPIWSNVFVENNAKVLVPLLWTRVQVRGQISLYRGGSIIFGLSEYPVSEFELVAEELLMS 425
            P+WSNV+VENNAKVLVPL+W+RVQVRGQIS+Y GGS+IFGLS++P+SEFELVAEELL+S
Sbjct: 354 SPLWSNVYVENNAKVLVPLVWSRVQVRGQISVYNGGSLIFGLSDFPISEFELVAEELLLS 413

Query: 426 DSVIKVFGAFRVAIKMLLMWNSKILIDGGGNTIVTTSVLEVRNLVVL------------- 472
           DS+IKVFGAFRVA+KMLLMWNS + IDGG +T+V+ SVLEVRNL VL             
Sbjct: 414 DSIIKVFGAFRVAVKMLLMWNSTMEIDGGKSTVVSASVLEVRNLAVLRNHILFFAGRSVH 473

Query: 473 --------TENSVISSNANLGLYGQGLLQLTGQGDAIKGQRLSLSLFYNITVGTGSLLQA 524
                    + SVISSN NLGLYGQGLLQLTG GDAIKGQRLSLSLFYN+TVG GSLLQA
Sbjct: 474 GDCDFLPLQQRSVISSNTNLGLYGQGLLQLTGDGDAIKGQRLSLSLFYNVTVGPGSLLQA 533

Query: 525 PLDDDASRNVVTESLCKRQTCPIDLINPPDDCHVNYTLSFSLQICRVEDIVVSGLIKGSI 584
           PLDDDASR  VT+ LC  Q CPIDLI PPDDCHVNYTLSFSLQICRVED++V+G++KGSI
Sbjct: 534 PLDDDASRGTVTKHLCDTQRCPIDLITPPDDCHVNYTLSFSLQICRVEDLIVNGIMKGSI 593

Query: 585 VHIQRARTIIVDTYGMIIASELGCSEGMGKGIYSHGAGSGAGHGGRGGSGFFNGRLINGG 644
           +HI RART+IVDT G+I ASELGC+EG+GKG + +GAG GAGHGGRGG+G+ +G +  GG
Sbjct: 594 IHIHRARTVIVDTDGIITASELGCTEGIGKGNFLNGAGGGAGHGGRGGAGYVDGIMSIGG 653

Query: 645 HKYGNADLPCELGSGAEGPNESYAPAIGGGMIVMGSIQWPLFRLDIYGSVKADGESVGKK 704
           ++YGNA LPCELGSG +GPNESY   +GGGMIVMGSIQWPL RLD+YGS++ADGES  K 
Sbjct: 654 NEYGNAILPCELGSGTKGPNESYGHVVGGGMIVMGSIQWPLLRLDLYGSLRADGESFSKA 713

Query: 705 TINGNSSLIGGLGGGSGGTILLFLQELTLEDNSSVSVVGGSGGPPGGGGGGGGRVHFHWS 764
             + + SL+GGLGGGSGGT+LLFLQE  L ++SS+S+VGG+GG  GGGGGGGGRVHFHWS
Sbjct: 714 ITSSDGSLVGGLGGGSGGTVLLFLQEFRLLESSSLSIVGGNGGSLGGGGGGGGRVHFHWS 773

Query: 765 KIDSGVEYVPVATISGSINSSGGAADNTGLFGEVGTVTGKKCPKGLYGTFCKECPIGTYK 824
           KI +G EY PVA+ISG++N SGGA DN G  G+ GT+TGK CPKGLYG FC+ECP+GTYK
Sbjct: 774 KIGTGEEYFPVASISGTMNYSGGAGDNDGFHGQEGTITGKACPKGLYGIFCEECPVGTYK 833

Query: 825 DMEGSDESLCTPCSLELLPRRANFIYVRGGVSQPFCPYECISEKYRMPKCYTPLEELMYT 884
           D++GSD  LC PC L+LLP RANFIY RGGV+   CPY+CIS+KY MP CYTPLEEL+YT
Sbjct: 834 DVDGSDAHLCIPCPLDLLPNRANFIYKRGGVTTRSCPYKCISDKYGMPNCYTPLEELIYT 893

Query: 885 FGGPWPFVLLLSCILVLLALLLSTLRIKLVGSSPSYREHSIERHSRHHFPYLLSLSEVRG 944
           FGGPW F ++LS +L+LLALLLSTLRIKL+GS   +   SIE H+ H FP+LLSLSEVRG
Sbjct: 894 FGGPWLFSVVLSFVLLLLALLLSTLRIKLIGSGSYHSSSSIEHHNHHSFPHLLSLSEVRG 953

Query: 945 TRAEETQSHVHRMYFMGPNTFREPWHLPYSPPNAIIEIV 983
            R +ETQSHVHRMYFMGPNTFREPWHLPYSPP+AIIEIV
Sbjct: 954 ARTDETQSHVHRMYFMGPNTFREPWHLPYSPPHAIIEIV 992

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356540575|ref|XP_003538763.1| PREDICTED: uncharacterized protein LOC100781159 [Glycine max]

 Score = 1214 bits (3140), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 734/978 (75%), Positives = 836/978 (85%), Gaps = 1/978 (0%)

Query: 6   MRSYLWWCILLGYLYVSTLSFSSGQYLDRAIQSGNWLHDLGSDLKDDFKSTTLNFVEISI 65
           M   LW CILLGYL++S +S SSG +L+R+    NWL   GS +  D +     FVE S 
Sbjct: 1   MHWNLWCCILLGYLHISCISLSSGHHLNRSTGLENWLGYSGSLVGYDSQPYDSAFVETST 60

Query: 66  LPSQLNDSVSCGDLEGVGSLNTTCLLNSNLYLNYDLYIYGTGNLEILPKISIVCPVEGCK 125
               LN+SVSC DLEGVGS NTTCLL+S  YL  D+YIYG GNLEIL  +S++CPVEGC 
Sbjct: 61  SSFPLNESVSCEDLEGVGSFNTTCLLSSTHYLKSDIYIYGVGNLEILSDVSLLCPVEGCM 120

Query: 126 ITFNMSGNINMGQYAAIVAGSVVVSAANLTMDLNSSINTTSLGGLPPSPTSGTPVGYDGA 185
           IT N+SGNI +GQ A+IVAGSVV+SAANLTM+ NS I+++SLGG PPS TSGTPVG DGA
Sbjct: 121 ITVNVSGNIKLGQNASIVAGSVVLSAANLTMEYNSYIDSSSLGGSPPSQTSGTPVGDDGA 180

Query: 186 GGGHGGRGASCHKNNKTSFWGGDVYAWSTLSEPWSYGSKGGGTSAEYQYGGNGGGRIKLL 245
           GGGHGGRGASC KNNKT+ WGGDVYAWSTLSEPWSYGSKGGG S + +YGGNGGGR+KLL
Sbjct: 181 GGGHGGRGASCLKNNKTN-WGGDVYAWSTLSEPWSYGSKGGGKSTKKKYGGNGGGRVKLL 239

Query: 246 VKDMLYLNGSVTAEGGDGGLKGGGGSGGSIYVLAVKLKGYGFISAAGGRGWGGGGGGRVS 305
           VKD LY+NGS+TA+GGDGG  GGGGSGGSI V AVKLKGYG I+AAGG GWGGGGGGR+S
Sbjct: 240 VKDNLYVNGSITAKGGDGGSDGGGGSGGSILVHAVKLKGYGIINAAGGMGWGGGGGGRIS 299

Query: 306 LDCYSIQEDIKVTVHGGFSIGCPENAGAAGTNFNAYLRSLRVSNDNVTTETETPLLDFPT 365
           LDCYSIQED  +TVHGG SIGCPEN+GAAGT FNA+L SL+VSNDNVTTETETPLLDF T
Sbjct: 300 LDCYSIQEDFNITVHGGLSIGCPENSGAAGTYFNAHLLSLKVSNDNVTTETETPLLDFST 359

Query: 366 RPIWSNVFVENNAKVLVPLLWTRVQVRGQISLYRGGSIIFGLSEYPVSEFELVAEELLMS 425
            P+WSNV+VENNAKVLVPL+W+RVQVRGQIS+Y GGS+IFGLS+YP+SEFELVAEELL+S
Sbjct: 360 SPLWSNVYVENNAKVLVPLVWSRVQVRGQISVYSGGSLIFGLSDYPISEFELVAEELLLS 419

Query: 426 DSVIKVFGAFRVAIKMLLMWNSKILIDGGGNTIVTTSVLEVRNLVVLTENSVISSNANLG 485
           DS+IKVFGAFRV++KMLLMW+S I IDGG +T+VT SVLEVRNL VL +NSV+SSN NL 
Sbjct: 420 DSIIKVFGAFRVSVKMLLMWDSTIQIDGGESTVVTASVLEVRNLAVLRQNSVVSSNTNLA 479

Query: 486 LYGQGLLQLTGQGDAIKGQRLSLSLFYNITVGTGSLLQAPLDDDASRNVVTESLCKRQTC 545
           LYGQGLLQLTG GDAIKGQRLSLSLFYN+TVG GSLLQAPLDDDASR  VT+ LC  Q C
Sbjct: 480 LYGQGLLQLTGDGDAIKGQRLSLSLFYNVTVGPGSLLQAPLDDDASRGTVTKHLCDTQRC 539

Query: 546 PIDLINPPDDCHVNYTLSFSLQICRVEDIVVSGLIKGSIVHIQRARTIIVDTYGMIIASE 605
           PIDLI PPDDCHVNYTLSFSLQICRVED++V+G++KGSI+HI RART+IVDT GMI ASE
Sbjct: 540 PIDLITPPDDCHVNYTLSFSLQICRVEDLLVNGIMKGSIIHIHRARTVIVDTDGMITASE 599

Query: 606 LGCSEGMGKGIYSHGAGSGAGHGGRGGSGFFNGRLINGGHKYGNADLPCELGSGAEGPNE 665
           LGC+EG+GKG + +GAG GAGHGG+GGSG+FNGR   GG++YGNA LPCELGSG EGPNE
Sbjct: 600 LGCTEGIGKGNFLNGAGGGAGHGGKGGSGYFNGRESIGGNEYGNAILPCELGSGTEGPNE 659

Query: 666 SYAPAIGGGMIVMGSIQWPLFRLDIYGSVKADGESVGKKTINGNSSLIGGLGGGSGGTIL 725
           SY   +GGGMIVMGSIQWPL RLD+YGS++ADGES  K   +G+ SL+GGLGGGSGGT+L
Sbjct: 660 SYGHVVGGGMIVMGSIQWPLLRLDLYGSLRADGESFSKSIKSGDGSLVGGLGGGSGGTVL 719

Query: 726 LFLQELTLEDNSSVSVVGGSGGPPGGGGGGGGRVHFHWSKIDSGVEYVPVATISGSINSS 785
           LFLQEL L +NSS+SVVGG+GGP GGGGGGGGR+HFHWSKI    EYVPVA+I+G++N+S
Sbjct: 720 LFLQELRLLENSSLSVVGGNGGPVGGGGGGGGRIHFHWSKIGMEEEYVPVASITGTVNNS 779

Query: 786 GGAADNTGLFGEVGTVTGKKCPKGLYGTFCKECPIGTYKDMEGSDESLCTPCSLELLPRR 845
           GGA DN G  G+ GT+TGK CPKGLYG FC+ECPIGTYKD++GSDE LC PC L+LLP R
Sbjct: 780 GGAGDNDGHHGQEGTITGKACPKGLYGIFCEECPIGTYKDVDGSDEHLCIPCPLDLLPNR 839

Query: 846 ANFIYVRGGVSQPFCPYECISEKYRMPKCYTPLEELMYTFGGPWPFVLLLSCILVLLALL 905
           ANFIY RGGV++  CPY+CIS+KYRMP CYTPLEEL+YTFGGPWPF +LLS IL+L+ALL
Sbjct: 840 ANFIYKRGGVTRRTCPYKCISDKYRMPNCYTPLEELIYTFGGPWPFSVLLSFILLLVALL 899

Query: 906 LSTLRIKLVGSSPSYREHSIERHSRHHFPYLLSLSEVRGTRAEETQSHVHRMYFMGPNTF 965
           LSTLR KL GS       SIE H+ H FPYLLSLSEVRG RAEETQSHVHRMYFMGPNTF
Sbjct: 900 LSTLRNKLTGSGSYRSSSSIEHHNHHRFPYLLSLSEVRGARAEETQSHVHRMYFMGPNTF 959

Query: 966 REPWHLPYSPPNAIIEIV 983
           REPWHLPYSPP+AIIEIV
Sbjct: 960 REPWHLPYSPPHAIIEIV 977

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297742170|emb|CBI33957.3| unnamed protein product [Vitis vinifera]

 Score = 1135 bits (2937), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 666/829 (80%), Positives = 731/829 (88%), Gaps = 3/829 (0%)

Query: 156 MDLNSSINTTSLGGLPPSPTSGTPVGYDGAGGGHGGRGASCHKNNKTSFWGGDVYAWSTL 215
           M+  SS+NT+SLGG PP  TSGTPVGYDGAGGGHGGRGASC K+N+T FWGGDVYAWSTL
Sbjct: 1   MEQYSSVNTSSLGGPPPPQTSGTPVGYDGAGGGHGGRGASCLKSNRTKFWGGDVYAWSTL 60

Query: 216 SEPWSYGSKGGGTSAEYQYGGNGGGRIKLLVKDMLYLNGSVTAEGGDGGLKGGGGSGGSI 275
           SEPWSYGSKGGG SAE ++GG+GGGR+ L V+D+LYLNGSVTAEGG+GG   GGGSGGSI
Sbjct: 61  SEPWSYGSKGGGNSAENRFGGDGGGRVMLKVRDILYLNGSVTAEGGNGGPGRGGGSGGSI 120

Query: 276 YVLAVKLKGYGFISAAGGRGWGGGGGGRVSLDCYSIQEDIKVTVHGGFSIGCPENAGAAG 335
            V A+KLKGYG ISAAGG GWGGGGGGR+SLDCYSIQED+K+TVHGG SIGCP NAGAAG
Sbjct: 121 MVHALKLKGYGTISAAGGSGWGGGGGGRISLDCYSIQEDVKITVHGGLSIGCPGNAGAAG 180

Query: 336 TNFNAYLRSLRVSNDNVTTETETPLLDFPTRPIWSNVFVENNAKVLVPLLWTRVQVRGQI 395
           T F+A L SLRV NDN+TTETETPLLDFPT P+WSNVFVENNAKVLVPLLWTRVQVRGQI
Sbjct: 181 TYFDATLLSLRVGNDNITTETETPLLDFPTTPLWSNVFVENNAKVLVPLLWTRVQVRGQI 240

Query: 396 SLYRGGSIIFGLSEYPVSEFELVAEELLMSDSVIKVFGAFRVAIKMLLMWNSKILIDGGG 455
            L  GGSIIFGLSEYP+SEFELVAEELLMSDSVIKVFGAFRVA+KMLLMWNSKI IDGGG
Sbjct: 241 KLLCGGSIIFGLSEYPISEFELVAEELLMSDSVIKVFGAFRVAVKMLLMWNSKIKIDGGG 300

Query: 456 NTIVTTSVLEVRNLVVLTENSVISSNANLGLYGQGLLQLTGQGDAIKGQRLSLSLFYNIT 515
           NT+VTTSVLEVRNL+VLTENSVISSN NL +YGQGLL+LTG GDAIK QRLSLSLFYNIT
Sbjct: 301 NTVVTTSVLEVRNLIVLTENSVISSNTNLAVYGQGLLKLTGHGDAIKAQRLSLSLFYNIT 360

Query: 516 VGTGSLLQAPLDDDASRNVVTESLCKRQTCPIDLINPPDDCHVNYTLSFSLQICRVEDIV 575
           VG GSLLQAPLDDD S  +VT+S C+ QTCP+DLI PPDDCHVN TLSFSLQICRVED++
Sbjct: 361 VGPGSLLQAPLDDDTS--MVTKSRCESQTCPMDLITPPDDCHVNNTLSFSLQICRVEDLL 418

Query: 576 VSGLIKGSIVHIQRARTIIVDTYGMIIASELGCSEGMGKGIYSHGAGSGAGHGGRGGSGF 635
           V+GLI+GSI+HI RARTII+DT GMI ASELGC  G+GKG YS+GAG GAGHGGRGGSG 
Sbjct: 419 VNGLIEGSIIHIHRARTIIIDTDGMISASELGCRTGIGKGNYSNGAGGGAGHGGRGGSGL 478

Query: 636 FNGRLINGGHKYGNADLPCELGSGAEGPNESYAPAIGGGMIVMGSIQWPLFRLDIYGSVK 695
           F+GR+  GG KYG+A+LPCELGSG EGPNESY    GGGMIVMGSIQWPL  LDIYG+++
Sbjct: 479 FHGRVSEGGDKYGSAELPCELGSGTEGPNESYGHVAGGGMIVMGSIQWPLLTLDIYGALR 538

Query: 696 ADGESVGKKTINGNSSLIGGLGGGSGGTILLFLQELTLEDNSSVSVVGGSGGPPGGGGGG 755
            +G+S    T N N +LIGGLGGGSGGTILLFLQ L L +NSS+S VGG+GG  GGGGGG
Sbjct: 539 TNGQSYVGATRNINGTLIGGLGGGSGGTILLFLQTLVLAENSSLSAVGGNGGLFGGGGGG 598

Query: 756 GGRVHFHWSKIDSGVEYVPVATISGSINSSGGAADNTGLFGEVGTVTGKKCPKGLYGTFC 815
           GGRVHFHWSKID G EYVPVA ISG+I+SSGGA +N G  GE GTVTGKKCPKGLYGTFC
Sbjct: 599 GGRVHFHWSKIDVGDEYVPVAMISGAIDSSGGAGNNGGFHGEEGTVTGKKCPKGLYGTFC 658

Query: 816 KECPIGTYKDMEGSDESLCTPCSLELLPRRANFIYVRGGVSQPFCPYECISEKYRMPKCY 875
            ECP+GTYKD++GSD  LC PCSL+LLP RA+FIYVRGGV+Q  CPY+CIS+KYRMP CY
Sbjct: 659 NECPVGTYKDVDGSDVHLCAPCSLDLLPNRADFIYVRGGVTQQSCPYKCISDKYRMPNCY 718

Query: 876 TPLEELMYTFGGPWPFVLLLSCILVLLALLLSTLRIKLVGSSPSYRE-HSIERHSRHHFP 934
           TPLEELMYTFGGPWPF LLLSCILVLLA+LLSTLRIKLVGS  SY   +SIE  S +HFP
Sbjct: 719 TPLEELMYTFGGPWPFSLLLSCILVLLAILLSTLRIKLVGSGCSYHSTNSIETQSHNHFP 778

Query: 935 YLLSLSEVRGTRAEETQSHVHRMYFMGPNTFREPWHLPYSPPNAIIEIV 983
           YLLSLSEVRGTRAEETQSHV+RMYFMGPNTFREPWHLPYSPPNAIIEIV
Sbjct: 779 YLLSLSEVRGTRAEETQSHVYRMYFMGPNTFREPWHLPYSPPNAIIEIV 827

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|334188236|ref|NP_199513.2| uncharacterized protein [Arabidopsis thaliana] gi|332008075|gb|AED95458.1| uncharacterized protein [Arabidopsis thaliana]

 Score = 1128 bits (2918), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 657/911 (72%), Positives = 764/911 (83%), Gaps = 1/911 (0%)

Query: 73  SVSCGDLEGVGSLNTTCLLNSNLYLNYDLYIYGTGNLEILPKISIVCPVEGCKITFNMSG 132
           SV+C DL+GVGSLNTTC LNSNL  + D+Y+YGTGNL IL  + + CPVEGC ITFN+SG
Sbjct: 48  SVTCQDLDGVGSLNTTCTLNSNLRFDSDVYVYGTGNLNILAHVLVDCPVEGCMITFNVSG 107

Query: 133 NINMGQYAAIVAGSVVVSAANLTMDLNSSINTTSLGGLPPSPTSGTPVGYDGAGGGHGGR 192
            I++GQ A IVAGSVV SA NLTMD NSSI TT+L G PPS TSGTP G DGAGGGHGGR
Sbjct: 108 TIHLGQSARIVAGSVVFSAINLTMDSNSSIYTTALAGPPPSQTSGTPYGIDGAGGGHGGR 167

Query: 193 GASCHKNNKTSFWGGDVYAWSTLSEPWSYGSKGGGTSAEYQYGGNGGGRIKLLVKDMLYL 252
           GASC K+NKT++WGGDVYAWS+L +PWSYGS+GG   +     G GGGR+KL++ D +++
Sbjct: 168 GASCVKSNKTTYWGGDVYAWSSLHDPWSYGSEGGVKLSTKNIRGKGGGRVKLILTDTVHV 227

Query: 253 NGSVTAEGGDGGLKGGGGSGGSIYVLAVKLKGYGFISAAGGRGWGGGGGGRVSLDCYSIQ 312
           NG+V+A+GGD G +GGGGSGGSI + AVKLKGYG ISA+GGRGWGGGGGGR+SLDCYSIQ
Sbjct: 228 NGTVSADGGDAGEEGGGGSGGSICIRAVKLKGYGKISASGGRGWGGGGGGRISLDCYSIQ 287

Query: 313 EDIKVTVHGGFSIGCPENAGAAGTNFNAYLRSLRVSNDNVTTETETPLLDFPTRPIWSNV 372
           ED+KV VHGG SIGCP+NAGAAGT FNA L SLRV NDN+TTETETPLLDFPTRP+WSN+
Sbjct: 288 EDVKVFVHGGASIGCPKNAGAAGTYFNAELVSLRVGNDNMTTETETPLLDFPTRPLWSNI 347

Query: 373 FVENNAKVLVPLLWTRVQVRGQISLYRGGSIIFGLSEYPVSEFELVAEELLMSDSVIKVF 432
           +V+NNAKVLVPLLWTR+QV GQISLYRG SI+FGLS+YP+SEFELVAEELLMS+SVIKVF
Sbjct: 348 YVDNNAKVLVPLLWTRMQVGGQISLYRGSSIVFGLSKYPISEFELVAEELLMSNSVIKVF 407

Query: 433 GAFRVAIKMLLMWNSKILIDGGGNTIVTTSVLEVRNLVVLTENSVISSNANLGLYGQGLL 492
           GA R+  KMLLM NS I IDG GN  V +SVLEVRNL VL   SVI+SN NLG+YGQG+L
Sbjct: 408 GALRLVTKMLLMLNSVIQIDGEGNPAVPSSVLEVRNLAVLKGKSVITSNTNLGVYGQGML 467

Query: 493 QLTGQGDAIKGQRLSLSLFYNITVGTGSLLQAPLDDDASRNVVTESLCKRQTCPIDLINP 552
            L+G GDAIKGQRLSLS FYNITVG GS+LQAPLDD  S+N VT++LC+ +TCPIDLI+P
Sbjct: 468 TLSGPGDAIKGQRLSLSQFYNITVGPGSILQAPLDDYESKNAVTQTLCESKTCPIDLISP 527

Query: 553 PDDCHVNYTLSFSLQICRVEDIVVSGLIKGSIVHIQRARTIIVDTYGMIIASELGCSEGM 612
           PDDCHVNYTLSFSLQICRVEDI+V GL+KGSI+ I RART++V   G+I AS  GCS G+
Sbjct: 528 PDDCHVNYTLSFSLQICRVEDILVRGLVKGSIIQIHRARTVVVTDDGLITASGFGCSAGL 587

Query: 613 GKGIYSHGAGSGAGHGGRGGSGFFNGRLINGGHKYGNADLPCELGSGAEGPNESYAPAIG 672
           GKG+YS+GAGSGAGHGGRGGSG FNGR+ NGGH YG+ D PCELGSGAE P++SY    G
Sbjct: 588 GKGLYSNGAGSGAGHGGRGGSGIFNGRVCNGGHTYGDPDFPCELGSGAESPDKSYGNVTG 647

Query: 673 GGMIVMGSIQWPLFRLDIYGSVKADGESVGKKTINGNSSLIGGLGGGSGGTILLFLQELT 732
           GGMIV+GSIQ+PL  L++ GS+ +DG+S+ K T NGN SL+GG+GGGSGGTILLFLQ L 
Sbjct: 648 GGMIVIGSIQFPLLTLNLRGSLSSDGQSLWKPTANGNRSLVGGVGGGSGGTILLFLQMLE 707

Query: 733 LEDNSSVSVVGGSGGPPGGGGGGGGRVHFHWSKIDSGVEYVPVATISGSINSSGGAADNT 792
           L  NSS+SV GG GGP GGGGGGGGR+HFHW  + +G EY PVA + GSI++ GGA DN 
Sbjct: 708 LSKNSSLSVRGGRGGPLGGGGGGGGRLHFHWDMLHTGDEYSPVAIVKGSISNRGGAGDNG 767

Query: 793 GLFGEVGTVTGKKCPKGLYGTFCKECPIGTYKDMEGSDESLCTPCSLELLPRRANFIYVR 852
           G FGE GT+TGKKCPKGLYGTFC ECPIGTYK++EGSD+ LCTPC  E LP RA F+YVR
Sbjct: 768 GRFGEEGTMTGKKCPKGLYGTFCLECPIGTYKNVEGSDKRLCTPCPPEHLPSRAKFVYVR 827

Query: 853 GGVSQPFCPYECISEKYRMPKCYTPLEELMYTFGGPWPFVLLLSCILVLLALLLSTLRIK 912
           GGVS+P CPY+C+SEKYR+P CYTPLEEL+YTFGGP PF LLLSC++V+L LLLSTL IK
Sbjct: 828 GGVSEPVCPYKCVSEKYRLPNCYTPLEELVYTFGGPLPFTLLLSCVVVVLGLLLSTLSIK 887

Query: 913 LVGSSPSYREHSIERHSRHHFPYLLSLSEVRGTRAEETQSHVHRMYFMGPNTFREPWHLP 972
           L+  S  Y  +SIE  S H  P+LLSLSEVRG ++E+TQ+H +RMYFMGPN FREPWHLP
Sbjct: 888 LLRLS-FYGANSIEHQSAHCLPHLLSLSEVRGAKSEDTQTHAYRMYFMGPNNFREPWHLP 946

Query: 973 YSPPNAIIEIV 983
           YSPP AIIEIV
Sbjct: 947 YSPPGAIIEIV 957

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297794531|ref|XP_002865150.1| glycine-rich protein [Arabidopsis lyrata subsp. lyrata] gi|297310985|gb|EFH41409.1| glycine-rich protein [Arabidopsis lyrata subsp. lyrata]

 Score = 1116 bits (2887), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 671/978 (68%), Positives = 788/978 (80%), Gaps = 25/978 (2%)

Query: 6   MRSYLWWCILLGYLYVSTLSFSSGQYLDRAIQSGNWLHDLGSDLKDDFKSTTLNFVEISI 65
           M   ++ C+LL    VST  FS  QY     +S      L SD +D   ST+L       
Sbjct: 1   MLGLVFLCVLL----VSTPCFSLSQYGGTEFESP---LRLFSD-EDSGNSTSLPI----- 47

Query: 66  LPSQLNDSVSCGDLEGVGSLNTTCLLNSNLYLNYDLYIYGTGNLEILPKISIVCPVEGCK 125
                  SV+C DL+GVGSLNTTC LNS+L  + D+Y+YGTGNL IL  + + CP+EGC 
Sbjct: 48  -------SVTCQDLDGVGSLNTTCTLNSDLRFDSDVYVYGTGNLNILAHVLVDCPIEGCM 100

Query: 126 ITFNMSGNINMGQYAAIVAGSVVVSAANLTMDLNSSINTTSLGGLPPSPTSGTPVGYDGA 185
           I FN+SG I++GQ A IVAGSVV SA NLTMD NSSI TT+L G PPS TSGTP G DGA
Sbjct: 101 IIFNVSGTIHLGQSARIVAGSVVFSAINLTMDSNSSIYTTALAGPPPSQTSGTPYGSDGA 160

Query: 186 GGGHGGRGASCHKNNKTSFWGGDVYAWSTLSEPWSYGSKGGGTSAEYQYGGNGGGRIKLL 245
           GGGHGGRGASC K+NKT++WGGDVYAWS+L +PWSYGS+GG   +     G GGGR++LL
Sbjct: 161 GGGHGGRGASCVKSNKTTYWGGDVYAWSSLHDPWSYGSEGGVKLSTKNIRGKGGGRVRLL 220

Query: 246 VKDMLYLNGSVTAEGGDGGLKGGGGSGGSIYVLAVKLKGYGFISAAGGRGWGGGGGGRVS 305
           +KD +++NG+V A+GGD G +GGGGSGGSI + A    GYG ISA+GGRGWGGGGGGR+S
Sbjct: 221 LKDTVHVNGTVYADGGDAGEEGGGGSGGSICIRA----GYGKISASGGRGWGGGGGGRIS 276

Query: 306 LDCYSIQEDIKVTVHGGFSIGCPENAGAAGTNFNAYLRSLRVSNDNVTTETETPLLDFPT 365
           LDCYSIQED+KV VHGG SIGCP+NAGAAGT FNA L SLRV NDN+TTETETPLLDFPT
Sbjct: 277 LDCYSIQEDVKVFVHGGASIGCPKNAGAAGTYFNAELVSLRVGNDNMTTETETPLLDFPT 336

Query: 366 RPIWSNVFVENNAKVLVPLLWTRVQVRGQISLYRGGSIIFGLSEYPVSEFELVAEELLMS 425
           RP+WSN++V+NNAKVLVPLLWTR+QVRGQISLYRG SI+FGLS+YP+SEFELVAEELLMS
Sbjct: 337 RPLWSNIYVDNNAKVLVPLLWTRMQVRGQISLYRGSSIVFGLSKYPISEFELVAEELLMS 396

Query: 426 DSVIKVFGAFRVAIKMLLMWNSKILIDGGGNTIVTTSVLEVRNLVVLTENSVISSNANLG 485
           +SVIKVFGA R+  KMLLM NS I IDG GN  V +SVLEVRNL VL   SVI+SNANLG
Sbjct: 397 NSVIKVFGALRLVTKMLLMLNSVIQIDGEGNPAVPSSVLEVRNLAVLRGKSVITSNANLG 456

Query: 486 LYGQGLLQLTGQGDAIKGQRLSLSLFYNITVGTGSLLQAPLDDDASRNVVTESLCKRQTC 545
           +YGQG+L L+G GDAIKGQRLSLS FYNITVG GS+LQAPLDD  S+N VT++LC+ +TC
Sbjct: 457 VYGQGMLTLSGPGDAIKGQRLSLSQFYNITVGPGSILQAPLDDYESKNAVTQTLCESKTC 516

Query: 546 PIDLINPPDDCHVNYTLSFSLQICRVEDIVVSGLIKGSIVHIQRARTIIVDTYGMIIASE 605
           PIDLI+PPDDCHVNYTLSFSLQICRVEDI+V GL+KGSI+ I RART++V   G+I A+ 
Sbjct: 517 PIDLISPPDDCHVNYTLSFSLQICRVEDILVIGLVKGSIIQIHRARTVVVTDDGLITATG 576

Query: 606 LGCSEGMGKGIYSHGAGSGAGHGGRGGSGFFNGRLINGGHKYGNADLPCELGSGAEGPNE 665
            GCS G+GKG+YS+GAGSGAGHGGRGGSG FNGR+ NGGH YG+ D PCELGSGAE P++
Sbjct: 577 FGCSGGLGKGLYSNGAGSGAGHGGRGGSGIFNGRVCNGGHTYGDPDFPCELGSGAESPDK 636

Query: 666 SYAPAIGGGMIVMGSIQWPLFRLDIYGSVKADGESVGKKTINGNSSLIGGLGGGSGGTIL 725
           SY    GGGMIV+GSIQ+PL  L++ GS+ +DG+S+ K T NGN SL+GG+GGGSGGTIL
Sbjct: 637 SYGNVTGGGMIVIGSIQFPLLILNLRGSLSSDGQSLWKPTANGNRSLVGGVGGGSGGTIL 696

Query: 726 LFLQELTLEDNSSVSVVGGSGGPPGGGGGGGGRVHFHWSKIDSGVEYVPVATISGSINSS 785
           LFLQ L L  NSS+SV GG GGP GGGGGGGGR+HFHW  + +G EY PVA + GSI++ 
Sbjct: 697 LFLQMLELSKNSSLSVRGGRGGPLGGGGGGGGRLHFHWDMLHTGDEYSPVAVVKGSISNR 756

Query: 786 GGAADNTGLFGEVGTVTGKKCPKGLYGTFCKECPIGTYKDMEGSDESLCTPCSLELLPRR 845
           GGA DN G FGE GT+TGKKCPKGLYGTFC ECPIGTYK++EGSD+ LCTPC  E LP R
Sbjct: 757 GGAGDNGGRFGEEGTMTGKKCPKGLYGTFCLECPIGTYKNVEGSDKHLCTPCPPEHLPSR 816

Query: 846 ANFIYVRGGVSQPFCPYECISEKYRMPKCYTPLEELMYTFGGPWPFVLLLSCILVLLALL 905
           A F+YVRGGVS+P CPY+C+S+KYR+P CYTPLEEL+YTFGGP PF LLLSC++V+L LL
Sbjct: 817 AKFVYVRGGVSEPVCPYKCVSDKYRLPNCYTPLEELVYTFGGPLPFTLLLSCVVVVLGLL 876

Query: 906 LSTLRIKLVGSSPSYREHSIERHSRHHFPYLLSLSEVRGTRAEETQSHVHRMYFMGPNTF 965
           LSTL IKL+  S  Y  +SIE  S H  P+LLSLSEVRG ++E+TQ+H +RMYFMGPNTF
Sbjct: 877 LSTLSIKLLRLS-FYGANSIEHQSAHCLPHLLSLSEVRGAKSEDTQTHAYRMYFMGPNTF 935

Query: 966 REPWHLPYSPPNAIIEIV 983
           REPWHLPYSPP+AIIEIV
Sbjct: 936 REPWHLPYSPPDAIIEIV 953

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	983
TAIR|locus:2123762	1432	AT4G32920 "AT4G32920" [Arabido	0.930	0.638	0.408	2.9e-183

TAIR|locus:2123762 AT4G32920 "AT4G32920" [Arabidopsis thaliana (taxid:3702)]

 Score = 1778 (630.9 bits), Expect = 2.9e-183, P = 2.9e-183
 Identities = 378/926 (40%), Positives = 501/926 (54%)

Query:    67 PSQLNDSVSC-GDLEGVGSXXXXXXXXXXXXXXXXXXXXGTGNLEILPKISIVCPVEGCK 125
             P   + SVSC  DL GVGS                    G GNL +LP + +VC   GC 
Sbjct:    51 PDDDDSSVSCVDDLGGVGSLDSTCKLVADLNLTRDLNITGKGNLHVLPGVRLVCQFPGCS 110

Query:   126 ITFNMSGNINMGQYXXXXXXXXXXXXXNLTMDLNSSINXXXXXXXXXXXXXXXXVXXXXX 185
             I+ N+SGN ++ +              N    L+S+++                      
Sbjct:   111 ISVNISGNFSLAENSSVIAGTFRLAAENAEFGLSSAVDTTGLAGEPPPDTSGTPEGVEGA 170

Query:   186 XXXXXXXXASCHKNNKTSF----WGGDVYAWSTLSEPWSYGSKGGGTSAEYQYGGNGGGR 241
                     A C  +  T      +GGDVY WS+L +P  YGS+GG TS E  YGG GGG 
Sbjct:   171 GGGYGGRGACCLSDTTTKIPEDVFGGDVYGWSSLEKPEIYGSRGGSTSNEVDYGGGGGGT 230

Query:   242 IKLLVKDMLYLNGSVTAEXXXXXXXXXXXXXXSIYVLAVKLKGYGFISAAXXXXXXXXXX 301
             + + +   + LNGSV A+              SI+V+A K+ G G +SA+          
Sbjct:   231 VAIEILGYISLNGSVLADGASGGVKGGGGSGGSIFVMAHKMAGNGRLSASGGDGYAGGGG 290

Query:   302 XXVSLDCYSIQEDIKVTVHGGFSIGCPENAGAAGTNFNAYLRSLRVSNDNVTTETETPLL 361
               VS+D YS   D K+  +GG S GCPENAGAAGT ++    SL + N N TT T+T LL
Sbjct:   291 GRVSVDIYSRHSDPKIFFNGGRSFGCPENAGAAGTLYDVISESLTIDNHNKTTYTDTLLL 350

Query:   362 DFPTRPIWSNVFVENNAKVLVPLLWTRVQVRGQISLYRGGSIIFGLSEYPVSEFELVAEE 421
             +FP   +++N+++ N AKV VPL W+RVQV+G ISL  GG + FGL  Y  SEFEL AEE
Sbjct:   351 EFPNHRLFTNLYIRNMAKVAVPLRWSRVQVQGLISLSNGGELNFGLPRYASSEFELFAEE 410

Query:   422 LLMSDSVIKVFGAFRVAIKMLLMWNSKILIDGGGNTIVTTSVLEVRNLVVLTENSVISSN 481
             LLMS+S IKV+GA R+ +K+ LM  S++ IDGGG TI+ TS+LE+ NL+VL E+SVI SN
Sbjct:   411 LLMSNSAIKVYGALRMTVKVFLMLKSRMFIDGGGVTILGTSMLEISNLLVLKESSVIQSN 470

Query:   482 ANXXXXXXXXXXXXXXXDAIKGQRLSLSLFYNITVGTGSLLQAPLDDDASRNVVTESLCK 541
              N               D I+ QRL LSLFY+I VG G++L+ PL + ++  +  +  C+
Sbjct:   471 GNLGVHGQGLLNLTGTGDTIEAQRLILSLFYSIQVGAGAVLRGPLQNASTGGLTPKLYCQ 530

Query:   542 RQTCPIDLINPPDDCHVNYTLSFSLQICRVEDIVVSGLIKGSIVHIQRARTIIVDTYGMI 601
             RQ CP++L++PP+DC+VN +L F+LQICRVEDI V GLIKGS++    ART++V + G I
Sbjct:   531 RQDCPVELLHPPEDCNVNSSLPFTLQICRVEDITVEGLIKGSVIQFHLARTVLVRSSGTI 590

Query:   602 IASELGCSEGMGKGIYSXXXXXXXXXXXXXXXXX-XXXXLINGGHKYGNADLPCELGSGA 660
              A  +GC  G+G G +                        I GG  YGNADLPCELGSG+
Sbjct:   591 SADGMGCKGGVGTGRFLRSGIGSGGGHGGKGGSGCYNHTCIEGGESYGNADLPCELGSGS 650

Query:   661 EGPNESYAPAIGGGMIVMGSIQWPLFRLDIYGSVKADGESVGKKTXXXXXXXXXXXXXXX 720
              G  ES     GGG+IV+GS++ PL  L + GS+  DGES  +KT               
Sbjct:   651 -GNEESTDSVAGGGIIVLGSLEHPLSSLSLEGSITTDGESP-RKTLKGLSNSSLGPGGGS 708

Query:   721 XXTILLFLQELTLEDNXXXXXXXXXXXXXXXXXXXXXRVHFHWSKIDSGVEYVPVATXXX 780
               T+LLFL+ L +  +                     R+HFHWS I +G  Y PVA    
Sbjct:   709 GGTVLLFLRTLEIGRSAILSSIGGNGSLKGGGGGSGGRIHFHWSDIPTGDVYHPVAIVKG 768

Query:   781 XXXXXXXAADNTGLFGEVGTVTGKKCPKGLYGTFCKECPIGTYKDMEGSDESLCTPCSLE 840
                            G  GT+TGK CP+GLYG FC+ECP GTYK++ GSD++LC  C   
Sbjct:   769 RVYVRGGMGIIEDNIGGNGTLTGKACPEGLYGLFCEECPSGTYKNVTGSDKALCHLCPAN 828

Query:   841 LLPRRANFIYVRGGVSQPFCPYECISEKYRMPKCYTPLEELMYTFGGPWPFVXXXXXXXX 900
              +P RA ++ VRGGV++  CPY+CIS++Y MP CYT LEEL+YTFGGPW F         
Sbjct:   829 DIPHRAVYVTVRGGVAETPCPYKCISDRYHMPHCYTTLEELIYTFGGPWLFGVLLVVVLL 888

Query:   901 XXXXXXXXXXXXXVGSSPSYXXXXXXXXXXX--XFPYLLSLSEVRGT-RAEETQSHVHRM 957
                          V     +              FP+L SL+EV  T R EE+Q H+HR+
Sbjct:   889 LLALVFSVARMKFVSGDELHGSAPTQHGSQIDHSFPFLESLNEVMETSRVEESQGHMHRI 948

Query:   958 YFMGPNTFREPWHLPYSPPNAIIEIV 983
             YF+GPNTF EPWHL ++PP  I EIV
Sbjct:   949 YFLGPNTFSEPWHLSHTPPEEIKEIV 974


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.319   0.137   0.422    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      983       778   0.00094  121 3  11 22  0.40    34
                                                     37  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  625 (66 KB)
  Total size of DFA:  408 KB (2196 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  53.49u 0.18s 53.67t   Elapsed:  00:00:02
  Total cpu time:  53.49u 0.18s 53.67t   Elapsed:  00:00:02
  Start:  Fri May 10 04:09:33 2013   End:  Fri May 10 04:09:35 2013

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0005773 "vacuole" evidence=IDA

GO:0006486 "protein glycosylation" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	983
PF07699	48	GCC2_GCC3: GCC2 and GCC3; InterPro: IPR011641 Prot	96.43
KOG0196	996	consensus Tyrosine kinase, EPH (ephrin) receptor f	96.03
PF07562	54	NCD3G: Nine Cysteines Domain of family 3 GPCR; Int	93.48
cd00185	98	TNFR Tumor necrosis factor receptor (TNFR) domain;	92.59
PHA02637	127	TNF-alpha-receptor-like protein; Provisional	90.75
PF07699	48	GCC2_GCC3: GCC2 and GCC3; InterPro: IPR011641 Prot	87.3
PHA02637	127	TNF-alpha-receptor-like protein; Provisional	87.19
PTZ00382	96	Variant-specific surface protein (VSP); Provisiona	82.52

>PF07699 GCC2_GCC3: GCC2 and GCC3; InterPro: IPR011641 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=96.43  E-value=0.0016  Score=53.65  Aligned_cols=26  Identities=50%  Similarity=1.127  Sum_probs=22.5

Q ss_pred             ccceeCCCCcccCCCCCCCCccccCCCC
Q 002008          813 TFCKECPIGTYKDMEGSDESLCTPCSLE  840 (983)
Q Consensus       813 ~fC~eCP~GtYK~~~Gs~~~lC~pC~~~  840 (983)
                      .-|++||.||||+..|+  ..|++||..
T Consensus         9 ~~C~~Cp~GtYq~~~g~--~~C~~Cp~g   34 (48)
T PF07699_consen    9 NKCQPCPKGTYQDEEGQ--TSCTPCPPG   34 (48)
T ss_pred             CccCCCCCCccCCccCC--ccCccCcCC
Confidence            35999999999999877  479999974

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Tyrosine-protein kinases can transfer a phosphate group from ATP to a tyrosine residue in a protein. These enzymes can be divided into two main groups []: Receptor tyrosine kinases (RTK), which are transmembrane proteins involved in signal transduction; they play key roles in growth, differentiation, metabolism, adhesion, motility, death and oncogenesis []. RTKs are composed of 3 domains: an extracellular domain (binds ligand), a transmembrane (TM) domain, and an intracellular catalytic domain (phosphorylates substrate). The TM domain plays an important role in the dimerisation process necessary for signal transduction []. Cytoplasmic / non-receptor tyrosine kinases, which act as regulatory proteins, playing key roles in cell differentiation, motility, proliferation, and survival. For example, the Src-family of protein-tyrosine kinases []. This entry represents various ephrin type A and B receptors, which have tyrosine kinase activity.

>KOG0196 consensus Tyrosine kinase, EPH (ephrin) receptor family [Signal transduction mechanisms]

Probab=96.03  E-value=0.006  Score=74.65  Aligned_cols=55  Identities=35%  Similarity=0.751  Sum_probs=39.8

Q ss_pred             ccCCCCcc----CccceeCCCCcccCCCCCCCCccccCCCCCCCCcceeEEeeCCccCCCCCcccccccccC
Q 002008          804 KKCPKGLY----GTFCKECPIGTYKDMEGSDESLCTPCSLELLPRRANFIYVRGGVSQPFCPYECISEKYRM  871 (983)
Q Consensus       804 ~~CP~Gly----G~fC~eCP~GtYK~~~Gs~~~lC~pC~~~~~P~ra~~~yv~~G~~~~~Cpy~C~sdk~~~  871 (983)
                      =-|.+||.    +.-|+.||.||||...  ...+|.+||.+....       ..  ..+.|  .|..++|+-
T Consensus       261 C~C~aGye~~~~~~~C~aCp~G~yK~~~--~~~~C~~CP~~S~s~-------~e--ga~~C--~C~~gyyRA  319 (996)
T KOG0196|consen  261 CVCKAGYEEAENGKACQACPPGTYKASQ--GDSLCLPCPPNSHSS-------SE--GATSC--TCENGYYRA  319 (996)
T ss_pred             eeecCCCCcccCCCcceeCCCCcccCCC--CCCCCCCCCCCCCCC-------CC--CCCcc--cccCCcccC
Confidence            46889994    5669999999999985  458899999754221       22  23667  477888744

>PF07562 NCD3G: Nine Cysteines Domain of family 3 GPCR; InterPro: IPR011500 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=93.48  E-value=0.015  Score=49.45  Aligned_cols=36  Identities=33%  Similarity=0.741  Sum_probs=20.6

Q ss_pred             cccCCCCcc-----C-----ccceeCCCCcccCCCCCCCCccccCCCC
Q 002008          803 GKKCPKGLY-----G-----TFCKECPIGTYKDMEGSDESLCTPCSLE  840 (983)
Q Consensus       803 ~~~CP~Gly-----G-----~fC~eCP~GtYK~~~Gs~~~lC~pC~~~  840 (983)
                      .++|++|++     +     +-|++||.|+|.|.+  |...|.+||.+
T Consensus         6 S~~C~pG~~k~~~~~~~~CCw~C~~C~~~~is~~~--~~~~C~~C~~~   51 (54)
T PF07562_consen    6 SEPCPPGQRKKIQKGQPSCCWDCVPCPEGEISNQT--DSTSCTKCPEG   51 (54)
T ss_dssp             S----TTTEEEE--SSS-S--EEEE--TTEEEE----ETTEEEE--TT
T ss_pred             CCCCCCCCEECccCCCcceEEEeecCCCCcEECCC--CccccccCCCc
Confidence            468999996     2     339999999999987  66889999974

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). GPCR family 3 receptors (also known as family C) are structurally similar to other GPCRs, but do not show any significant sequence similarity and thus represent a distinct group. Structurally they are composed of four elements; an N-terminal signal sequence; a large hydrophilic extracellular agonist-binding region containing several conserved cysteine residues which could be involved in disulphide bonds; a shorter region containing seven transmembrane domains; and a C-terminal cytoplasmic domain of variable length []. Family 3 members include the metabotropic glutamate receptors, the extracellular calcium-sensing receptors, the gamma-amino-butyric acid (GABA) type B receptors, and the vomeronasal type-2 receptors [, , , ]. As these receptors regulate many important physiological processes they are potentially promising targets for drug development. This entry represents a conserved sequence, found in the extracellular region, that contains several highly-conserved Cys residues that are predicted to form disulphide bridges.; GO: 0004930 G-protein coupled receptor activity, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 2E4X_B 2E4Y_A 2E4U_B 2E4V_B 2E4W_A.

>cd00185 TNFR Tumor necrosis factor receptor (TNFR) domain; superfamily of TNF-like receptor domains

Probab=92.59  E-value=0.18  Score=47.38  Aligned_cols=65  Identities=26%  Similarity=0.577  Sum_probs=41.5

Q ss_pred             EEcccCCCCcc---------CccceeCCCCcccCCCCCCCCccccCCCCCCCCcceeEEeeCC--ccCCCCCcccccccc
Q 002008          801 VTGKKCPKGLY---------GTFCKECPIGTYKDMEGSDESLCTPCSLELLPRRANFIYVRGG--VSQPFCPYECISEKY  869 (983)
Q Consensus       801 i~~~~CP~Gly---------G~fC~eCP~GtYK~~~Gs~~~lC~pC~~~~~P~ra~~~yv~~G--~~~~~Cpy~C~sdk~  869 (983)
                      .-=+.||+|++         ..-|++||.|||+..... ...|++|+.=.    ...+-++.+  .+.+.|.  |.+++|
T Consensus        12 ~cC~~C~pG~~~~~~C~~~~~t~C~~C~~g~ys~~~~~-~~~C~~c~~C~----~g~~~~~~ct~t~dt~C~--C~~G~y   84 (98)
T cd00185          12 LCCDQCPPGTYLSKDCTPGSDTVCEPCPPGTYTDSWNH-LPKCLSCRTCD----SGLVEKAPCTATRNTVCG--CKPGFY   84 (98)
T ss_pred             CCCCCCCCCccCCCcCCCCCCCeecCCCCCCcccCCCC-CCcCCcCccCC----CCCEEEccCCCCCCCeEe--CCCCCE
Confidence            44588999996         245999999999997422 25788887532    222333333  2334575  888877


Q ss_pred             cCC
Q 002008          870 RMP  872 (983)
Q Consensus       870 ~~p  872 (983)
                      -..
T Consensus        85 ~~~   87 (98)
T cd00185          85 CLT   87 (98)
T ss_pred             ecC
Confidence            443

When bound to TNF-like cytokines, TNFRs trigger multiple signal transduction pathways, they are involved in inflammation response, apoptosis, autoimmunity and organogenesis. TNFRs domains are elongated with generally three tandem repeats of cysteine-rich domains (CRDs). They fit in the grooves between protomers within the ligand trimer. Some TNFRs, such as NGFR and HveA, bind ligands with no structural similarity to TNF and do not bind ligand trimers.

>PHA02637 TNF-alpha-receptor-like protein; Provisional

Probab=90.75  E-value=0.26  Score=49.12  Aligned_cols=58  Identities=28%  Similarity=0.576  Sum_probs=36.8

Q ss_pred             cCCCCcc--Ccc-ceeCCCCcccCCCCC--CCCccccCCCCCCCCcceeEEeeCCccCCCCCcccccc
Q 002008          805 KCPKGLY--GTF-CKECPIGTYKDMEGS--DESLCTPCSLELLPRRANFIYVRGGVSQPFCPYECISE  867 (983)
Q Consensus       805 ~CP~Gly--G~f-C~eCP~GtYK~~~Gs--~~~lC~pC~~~~~P~ra~~~yv~~G~~~~~Cpy~C~sd  867 (983)
                      .|..+-|  +.+ |.+||+|||+...=+  ....|.|||..++....++..     .=..|.-.|+++
T Consensus        31 ~C~e~EY~~~~~CC~kCPPGt~v~~~Ct~~t~T~C~PCp~GTYTe~~N~~~-----~C~~C~~~Cd~~   93 (127)
T PHA02637         31 KCKDNEYKRHNLCCLSCPPGTYASRLCDIKTNTQCTPCGSGTFTSHNNHLP-----ACLSCNGRCDRV   93 (127)
T ss_pred             CCCCCcCcCCCeEcCCCCCCCEEeCcCCCCCCcccccCCCCCeeccCCCCC-----cccccCCccCcc
Confidence            6877766  444 999999999865322  135799999866555444431     124566667653

>PF07699 GCC2_GCC3: GCC2 and GCC3; InterPro: IPR011641 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=87.30  E-value=0.49  Score=39.09  Aligned_cols=33  Identities=45%  Similarity=0.921  Sum_probs=26.0

Q ss_pred             ceEEcccCCCCcc----C-ccceeCCCCcccCCCCCCC
Q 002008          799 GTVTGKKCPKGLY----G-TFCKECPIGTYKDMEGSDE  831 (983)
Q Consensus       799 GTi~~~~CP~Gly----G-~fC~eCP~GtYK~~~Gs~~  831 (983)
                      +.-.=.+||.|+|    | ..|++||.++|....|+..
T Consensus         7 ~~~~C~~Cp~GtYq~~~g~~~C~~Cp~g~~T~~~Gs~s   44 (48)
T PF07699_consen    7 GNNKCQPCPKGTYQDEEGQTSCTPCPPGSTTSSEGSTS   44 (48)
T ss_pred             CCCccCCCCCCccCCccCCccCccCcCCCccCCcCCcC
Confidence            3344579999998    4 4499999999998888754

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Tyrosine-protein kinases can transfer a phosphate group from ATP to a tyrosine residue in a protein. These enzymes can be divided into two main groups []: Receptor tyrosine kinases (RTK), which are transmembrane proteins involved in signal transduction; they play key roles in growth, differentiation, metabolism, adhesion, motility, death and oncogenesis []. RTKs are composed of 3 domains: an extracellular domain (binds ligand), a transmembrane (TM) domain, and an intracellular catalytic domain (phosphorylates substrate). The TM domain plays an important role in the dimerisation process necessary for signal transduction []. Cytoplasmic / non-receptor tyrosine kinases, which act as regulatory proteins, playing key roles in cell differentiation, motility, proliferation, and survival. For example, the Src-family of protein-tyrosine kinases []. This entry represents various ephrin type A and B receptors, which have tyrosine kinase activity.

>PHA02637 TNF-alpha-receptor-like protein; Provisional

Probab=87.19  E-value=0.45  Score=47.53  Aligned_cols=40  Identities=28%  Similarity=0.716  Sum_probs=30.8

Q ss_pred             CCceEEcccCCCCcc---------CccceeCCCCcccCCCCCCC-CccccCC
Q 002008          797 EVGTVTGKKCPKGLY---------GTFCKECPIGTYKDMEGSDE-SLCTPCS  838 (983)
Q Consensus       797 ~~GTi~~~~CP~Gly---------G~fC~eCP~GtYK~~~Gs~~-~lC~pC~  838 (983)
                      ..+.+-=+.||||+|         ..-|.+||.|||...  |+. ..|.+|.
T Consensus        38 ~~~~~CC~kCPPGt~v~~~Ct~~t~T~C~PCp~GTYTe~--~N~~~~C~~C~   87 (127)
T PHA02637         38 KRHNLCCLSCPPGTYASRLCDIKTNTQCTPCGSGTFTSH--NNHLPACLSCN   87 (127)
T ss_pred             cCCCeEcCCCCCCCEEeCcCCCCCCcccccCCCCCeecc--CCCCCcccccC
Confidence            456677799999996         456999999999875  344 4588876

>PTZ00382 Variant-specific surface protein (VSP); Provisional

Probab=82.52  E-value=1.4  Score=42.01  Aligned_cols=24  Identities=29%  Similarity=0.642  Sum_probs=18.4

Q ss_pred             ccceeCCCCcccCCCCCCCCccccCCC
Q 002008          813 TFCKECPIGTYKDMEGSDESLCTPCSL  839 (983)
Q Consensus       813 ~fC~eCP~GtYK~~~Gs~~~lC~pC~~  839 (983)
                      ..|++|..|+|++.   +...|.+|+.
T Consensus         4 ~~Ct~C~~g~~~~~---~~~~C~~C~~   27 (96)
T PTZ00382          4 AVCTSCDSDKKPNK---DGSGCVLCSV   27 (96)
T ss_pred             cccCcCCCCCccCC---CCCcCCcCCC
Confidence            46899999998885   3446888884

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	983
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-11
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-07

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 67.2 bits (163), Expect = 2e-11
 Identities = 70/442 (15%), Positives = 123/442 (27%), Gaps = 110/442 (24%)

Query: 196 CHKNNKT--SFWGGDV---YAWSTLSEPWSYGSKG-GGTSAEYQYGGN---GGG------ 240
             K  +    F    +   Y +  L  P     +     +  Y    +            
Sbjct: 72  LSKQEEMVQKFVEEVLRINYKF--LMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKY 129

Query: 241 ---RIKLL--VKDMLY-L--NGSVTAEGGDGGLKGGGGSGGSIYVLAVK-LKGYGFISAA 291
              R++    ++  L  L    +V        + G  GSG +   +A+     Y      
Sbjct: 130 NVSRLQPYLKLRQALLELRPAKNVL-------IDGVLGSGKT--WVALDVCLSYKVQCKM 180

Query: 292 GGRG-W---GGGGGGRVSLD-----CYSIQEDIKVTVHGGFSIGCPENAGAAGTNFNAYL 342
             +  W            L+      Y I  +         +I       +        L
Sbjct: 181 DFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNI--KLRIHSIQAELRRLL 238

Query: 343 RSLRVSN-----DNVTTETETPLLDFPTRPIWSNVFVENNAKVLVPLLWTR-VQVRGQIS 396
           +S    N      NV                W N F   + K+L+    TR  QV   +S
Sbjct: 239 KSKPYENCLLVLLNVQNAK-----------AW-NAF-NLSCKILLT---TRFKQVTDFLS 282

Query: 397 LYRGGSIIFGLSEYPVSEFE---LVAEELLMSDS------------VIKVFGAFRVAIK- 440
                 I        ++  E   L+ + L                  + +       I+ 
Sbjct: 283 AATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAES---IRD 339

Query: 441 MLLMWN--SKILIDGGGNTI-VTTSVL---EVR----NLVVLTENSVISSNANLGLYGQG 490
            L  W+    +  D     I  + +VL   E R     L V   ++ I +   L L    
Sbjct: 340 GLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTIL-LSLIWFD 398

Query: 491 LLQLTGQGDAIKGQRLSLSLFYNITVGTGSL------LQAPLDDDAS--RNVVTESLCKR 542
           +++        K  + SL +       T S+      L+  L+++ +  R++V      +
Sbjct: 399 VIKSDVMVVVNKLHKYSL-VEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPK 457

Query: 543 QTCPIDLINPPDDCHVNYTLSF 564
                DLI P  D    Y  S 
Sbjct: 458 TFDSDDLIPPYLD---QYFYSH 476

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 57.6 bits (138), Expect = 2e-08
 Identities = 54/368 (14%), Positives = 105/368 (28%), Gaps = 104/368 (28%)

Query: 306 LDCYSIQEDIKVTVHGGFSIGCPENAGAAGTNFNAYLR---SLRVSNDNVTTE-TETPL- 360
            DC  +Q+  K       S    ++   +    +  LR   +L    + +  +  E  L 
Sbjct: 33  FDCKDVQDMPK----SILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLR 88

Query: 361 LDFPTRPIWSNVFVENNAKVLVPLLWTRVQVRGQISLYRGGSIIFGLSEYPVSEFELVAE 420
           +++    + S +  E       P + TR+ +  +  LY    +    ++Y VS  +   +
Sbjct: 89  INYKF--LMSPIKTEQRQ----PSMMTRMYIEQRDRLYNDNQV---FAKYNVSRLQPYLK 139

Query: 421 --ELLMSDSV---IKVFGAFRVAIKMLLMWNSKILIDGGGNTIVTTSVLEVRNLVVL--- 472
             + L+       + + G       +L          G G T V   V    +  V    
Sbjct: 140 LRQALLELRPAKNVLIDG-------VL----------GSGKTWVALDVC--LSYKVQCKM 180

Query: 473 -------------TENSVISSNANLGLYGQGLLQLTGQGDAIKGQRLS-------LSLFY 512
                        +  +V+       L  Q     T + D     +L        L    
Sbjct: 181 DFKIFWLNLKNCNSPETVLEMLQK--LLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLL 238

Query: 513 NITVGTGSLLQAPLDDDASRNVVTESL---CK-----RQTCPIDLINPPDDCHV------ 558
                   LL   L +  +      +    CK     R     D ++     H+      
Sbjct: 239 KSKPYENCLLV--LLNVQNAKAW-NAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHS 295

Query: 559 -NYTLSFSLQI------CRVEDI-------------VVSGLIKGSIVHIQRARTIIVDTY 598
              T      +      CR +D+             +++  I+  +      + +  D  
Sbjct: 296 MTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKL 355

Query: 599 GMIIASEL 606
             II S L
Sbjct: 356 TTIIESSL 363

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 54.5 bits (130), Expect = 2e-07
 Identities = 64/382 (16%), Positives = 113/382 (29%), Gaps = 111/382 (29%)

Query: 303 RVSLDCYSIQEDIKVTVHGGFSIGCPENAG----AAGTNFNAYLRSLRVSNDNVTTETET 358
           R +L    ++    V + G    G     G    A          S +V           
Sbjct: 141 RQAL--LELRPAKNVLIDGVL--GS----GKTWVALDV-----CLSYKV----------- 176

Query: 359 PLLDFPTRPIWSNVFVENNAK-VLVPL--LWTRVQVRGQISLYRGGSIIFGLSEYPVSEF 415
                  +  W N+   N+ + VL  L  L  ++            +I   +        
Sbjct: 177 -QCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELR 235

Query: 416 ELVAEE-----LLMSDSV--IKVFGAFRVAIKMLLMWNSKILIDGGGNTIVTTSVLEVRN 468
            L+  +     LL+  +V   K + AF ++ K+LL    K + D       TT +    +
Sbjct: 236 RLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAA-TTTHISLDHH 294

Query: 469 LVVLTENSVISSNAN-LGLYGQGL-LQLTGQGDAIKGQRLSLSLFYNITVGTGSLLQAPL 526
            + LT + V S     L    Q L  +       +      LS+           ++  L
Sbjct: 295 SMTLTPDEVKSLLLKYLDCRPQDLPRE------VLTTNPRRLSII-------AESIRDGL 341

Query: 527 DD-DASRNVVTESLCK-RQTCPIDLINP-------------PDDCHVNYTLSFSLQIC-- 569
              D  ++V  + L    ++  ++++ P             P   H+   L   L +   
Sbjct: 342 ATWDNWKHVNCDKLTTIIESS-LNVLEPAEYRKMFDRLSVFPPSAHIPTIL---LSLIWF 397

Query: 570 ----RVEDIVVSGLIKGSIVHIQRARTI-----------------------IVDTYGMII 602
                   +VV+ L K S+V  Q   +                        IVD Y +  
Sbjct: 398 DVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPK 457

Query: 603 ASELGCSEGMGKG-----IYSH 619
                 S+ +         YSH
Sbjct: 458 TF---DSDDLIPPYLDQYFYSH 476

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	983
1jma_B	167	Herpesvirus entry mediator; V-type IG molecule and	93.26
2uwi_A	142	CRME protein; receptor, poxvirus TNF receptor, rec	93.1
2hey_R	146	Tumor necrosis factor receptor superfamily member;	92.8
4fhq_A	134	Tumor necrosis factor receptor superfamily member;	92.74
3tje_F	156	Tumor necrosis factor receptor superfamily member;	91.78
3fl7_A	536	Ephrin receptor; ATP-binding, kinase, nucleotide-b	91.24
1ext_A	162	Tumor necrosis factor receptor; binding protein, c	90.61
3me4_A	216	Tumor necrosis factor receptor superfamily member;	90.2
1du3_A	130	Death receptor 5; trail, DR5, complex; 2.20A {Homo	89.79
3alq_R	173	Tumor necrosis factor receptor superfamily member;	89.44
3u3p_A	313	Tumor necrosis factor receptor superfamily member;	89.33
3k51_B	176	Decoy receptor 3; DCR3, TL1A, TNF, TNFR, immunity,	88.96
3urf_Z	171	Tumor necrosis factor receptor superfamily member;	87.99
2e4u_A	555	Metabotropic glutamate receptor 3; G-protein-coupl	86.9
3qd6_R	177	CD40L receptor, tumor necrosis factor receptor sup	86.52
2hey_R	146	Tumor necrosis factor receptor superfamily member;	86.51
3k51_B	176	Decoy receptor 3; DCR3, TL1A, TNF, TNFR, immunity,	86.44
3me4_A	216	Tumor necrosis factor receptor superfamily member;	85.42
3alq_R	173	Tumor necrosis factor receptor superfamily member;	84.82
1sg1_X	161	Tumor necrosis factor receptor superfamily member	83.1
1ext_A	162	Tumor necrosis factor receptor; binding protein, c	82.51
3u3p_A	313	Tumor necrosis factor receptor superfamily member;	81.86
3urf_Z	171	Tumor necrosis factor receptor superfamily member;	81.6
1jma_B	167	Herpesvirus entry mediator; V-type IG molecule and	81.27

>1jma_B Herpesvirus entry mediator; V-type IG molecule and TNFR superfamily, viral protein; HET: NAG; 2.65A {Human herpesvirus 1} SCOP: g.24.1.1 g.24.1.1 PDB: 2aw2_B*

Probab=93.26  E-value=0.058  Score=53.62  Aligned_cols=65  Identities=26%  Similarity=0.511  Sum_probs=39.8

Q ss_pred             EcccCCCCcc---------CccceeCCCCcccCCCCCCCCccccCCCCCCCCcceeEEee-CCccCCCCCccccccccc
Q 002008          802 TGKKCPKGLY---------GTFCKECPIGTYKDMEGSDESLCTPCSLELLPRRANFIYVR-GGVSQPFCPYECISEKYR  870 (983)
Q Consensus       802 ~~~~CP~Gly---------G~fC~eCP~GtYK~~~Gs~~~lC~pC~~~~~P~ra~~~yv~-~G~~~~~Cpy~C~sdk~~  870 (983)
                      .=+.||+|+|         ...|++||.|||+..... ...|++|+.=. +....|+... .....+.|  .|.+++|.
T Consensus        15 ~C~~CppG~~~~~~C~~~~~t~C~~Cp~GtY~~~~n~-~~~C~~C~~C~-~~~g~~~~~~Ct~t~~t~C--~C~~G~y~   89 (167)
T 1jma_B           15 CCPKCSPGYRVKEACGELTGTVCEPCPPGTYIAHLNG-LSKCLQCQMCD-PAMGLRASRNCSRTENAVC--GCSPGHFC   89 (167)
T ss_dssp             CCBCBCTTEEEEECCCSSSCCEEEECCTTEECSSCBC-SSCCEECCCCC-TTTTEEEEECCCSSSCCEE--EECTTEEE
T ss_pred             CCCCCCCCCEeccCCCCCCCCcCCcCCCCccccccCc-CccccCCcccc-cCCCeEEeccCCCCCCCcc--cCCCCcee
Confidence            3467888875         356999999999986321 24688886311 1112233221 12345668  89998883

>2uwi_A CRME protein; receptor, poxvirus TNF receptor, receptor immunomodulator, TNF alpha receptor; 2.0A {Vaccinia virus}

Probab=93.10  E-value=0.062  Score=52.40  Aligned_cols=63  Identities=27%  Similarity=0.578  Sum_probs=41.2

Q ss_pred             EEcccCCCCcc---------CccceeCCCCcccCCCCCCCCccccCCCCCCCCcceeEEeeCC--ccCCCCCcccccccc
Q 002008          801 VTGKKCPKGLY---------GTFCKECPIGTYKDMEGSDESLCTPCSLELLPRRANFIYVRGG--VSQPFCPYECISEKY  869 (983)
Q Consensus       801 i~~~~CP~Gly---------G~fC~eCP~GtYK~~~Gs~~~lC~pC~~~~~P~ra~~~yv~~G--~~~~~Cpy~C~sdk~  869 (983)
                      .-=+.||||+|         ...|++||.|||+..... ...|++|..-. +  ...+-++..  ...+.|  .|.+++|
T Consensus        15 ~cC~~CppG~~~~~~C~~~~~t~C~pC~~gty~~~~n~-~~~C~~C~~C~-~--~~~~~~~~Ct~t~dtvC--~C~~G~y   88 (142)
T 2uwi_A           15 KCCKLCKPGTYSDHRCDKYSDTICGHCPSDTFTSIYNR-SPWCHSCRGPC-G--TNRVEVTPCTPTTNRIC--HCDSNSY   88 (142)
T ss_dssp             EEEECBCTTEEEEECCCSSCCCEEEECCTTEECCSSBC-CSSCEECCCCC-C--TTEEEEECCBTTBCCEE--EECTTEE
T ss_pred             CCCCCCCCCCeeCccCCCCCCCccCcCCCCCCcccCCC-CCccCCCcCcc-c--CCeeEeecCCCCCCCEe--eCCCCcE
Confidence            34477888887         466999999999997422 24699998632 1  234433333  334457  4888887

>2hey_R Tumor necrosis factor receptor superfamily member; cytokine, receptor-ligan complex, CO-stimulator, TNFSF; 2.00A {Homo sapiens} SCOP: g.24.1.1 g.24.1.1 g.24.1.1 PDB: 2hev_R

Probab=92.80  E-value=0.067  Score=51.96  Aligned_cols=61  Identities=23%  Similarity=0.481  Sum_probs=38.6

Q ss_pred             cccCCCCcc---------CccceeCCCCcccCCCCCCCCccccCCCCCCCCcceeEEeeCC--ccCCCCCcccccccc
Q 002008          803 GKKCPKGLY---------GTFCKECPIGTYKDMEGSDESLCTPCSLELLPRRANFIYVRGG--VSQPFCPYECISEKY  869 (983)
Q Consensus       803 ~~~CP~Gly---------G~fC~eCP~GtYK~~~Gs~~~lC~pC~~~~~P~ra~~~yv~~G--~~~~~Cpy~C~sdk~  869 (983)
                      =+.||+|+|         ...|++||.|||....+  ...|++|+.=  +.....+.++..  ...+.|  .|.+++|
T Consensus        19 C~~C~pG~~~~~~Ct~~~~t~C~~C~~gty~~~~~--~~~C~~C~~C--~~~~g~~~~~~Ct~t~dt~C--~C~~G~y   90 (146)
T 2hey_R           19 CHECRPGNGMVSRCSRSQNTVCRPCGPGFYNDVVS--SKPCKPCTWC--NLRSGSERKQLCTATQDTVC--RCRAGTQ   90 (146)
T ss_dssp             EECBCTTEEEEECCCSSCCCEEEECCTTEECCSCB--SSCCEECCCC--CGGGTEEEEECCBTTBCCEE--EECTTEE
T ss_pred             CCCCCCCCeecccCCCCCCCCcccCCCCCEECCCC--CCcCcccCCC--CCCCCceEeccCccCCCccc--cCCCCee
Confidence            478899886         35699999999999854  4579998852  222112222222  223446  4877777

>4fhq_A Tumor necrosis factor receptor superfamily member; cysteine rich domain, TNF receptor, structural genomics, PSI protein structure initiative; 2.25A {Homo sapiens} PDB: 2aw2_B*

Probab=92.74  E-value=0.068  Score=51.85  Aligned_cols=62  Identities=27%  Similarity=0.587  Sum_probs=39.9

Q ss_pred             cccCCCCcc---------CccceeCCCCcccCCCCCCCCccccCCCCCCCCcceeEEeeCC--ccCCCCCcccccccc
Q 002008          803 GKKCPKGLY---------GTFCKECPIGTYKDMEGSDESLCTPCSLELLPRRANFIYVRGG--VSQPFCPYECISEKY  869 (983)
Q Consensus       803 ~~~CP~Gly---------G~fC~eCP~GtYK~~~Gs~~~lC~pC~~~~~P~ra~~~yv~~G--~~~~~Cpy~C~sdk~  869 (983)
                      =+.||+|+|         ...|++||.|||+.... ....|++|..  =..+...+.++..  ...+.|.  |.+++|
T Consensus        18 C~~CppG~~~~~~C~~~~~t~C~pC~~gtys~~~n-~~~~C~~C~~--C~~~~g~~~~~~CT~t~dtvC~--C~~G~~   90 (134)
T 4fhq_A           18 CPKCSPGYRVKEACGELTGTVCEPCPPGTYIAHLN-GLSKCLQCQM--CDPAMGLRASRNCSRTENAVCG--CSPGHF   90 (134)
T ss_dssp             EECBCTTEEEEECCC--CCCEEEECCTTEECCSCB-CCSSCEECCC--CCGGGTEEEEECCCSSSCCEEE--ECTTEE
T ss_pred             CCCCCCCCEecccCCCCCCCcccCCCCCCEecCCC-CCCcCcCCCC--CCccCCeEEeccCCCCCCcccc--CCCCCE
Confidence            467888876         45799999999998741 2367999986  2222234444444  2334464  888777

>3tje_F Tumor necrosis factor receptor superfamily member; agonistic antibody, FAB fragment, antibody-receptor complex, cysteine-rich domain, FAS, immune; HET: EDO; 1.93A {Homo sapiens} PDB: 3thm_F*

Probab=91.78  E-value=0.14  Score=50.89  Aligned_cols=63  Identities=24%  Similarity=0.431  Sum_probs=36.3

Q ss_pred             cccCCCCcc----------CccceeCCCC-cccCCCCCCCCccccCCCCCCCCcceeEEeeCC--ccCCCCCcccccccc
Q 002008          803 GKKCPKGLY----------GTFCKECPIG-TYKDMEGSDESLCTPCSLELLPRRANFIYVRGG--VSQPFCPYECISEKY  869 (983)
Q Consensus       803 ~~~CP~Gly----------G~fC~eCP~G-tYK~~~Gs~~~lC~pC~~~~~P~ra~~~yv~~G--~~~~~Cpy~C~sdk~  869 (983)
                      =+.||||+|          -..|++||.| ||..... ....|.+|..  =.....++.++..  .+.+.|  .|.+++|
T Consensus        44 C~~CppG~~v~~~Ct~~~~~t~C~pC~~g~ty~~~~n-~~~~C~~C~~--C~~~~g~~~~~~CT~t~dtvC--~C~~G~f  118 (156)
T 3tje_F           44 HKPCPPGERKARDCTVNGDEPDCVPCQEGKEYTDKAH-FSSKCRRCRL--CDEGHGLEVEINCTRTQNTKC--RCKPNFF  118 (156)
T ss_dssp             SSCBCTTEEESSCCCSSSCCCCEEECCTTTEECSSCB-SCSCCEECCC--CCGGGTEEEEECCBTTBCCEE--EECTTEE
T ss_pred             CCCCCCCCeECCcCCCCCCCCcceeCCCCCeeeccCC-CCCcCcCCCC--CCCCcceEEeccccCCCCCee--eCCCCCE
Confidence            467777775          2568888888 7887631 1246777774  2222223433333  233457  7888877


Q ss_pred             c
Q 002008          870 R  870 (983)
Q Consensus       870 ~  870 (983)
                      -
T Consensus       119 c  119 (156)
T 3tje_F          119 C  119 (156)
T ss_dssp             C
T ss_pred             e
Confidence            3

>3fl7_A Ephrin receptor; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase, glycoprotein; HET: NAG; 2.50A {Homo sapiens} PDB: 2x10_A* 2x11_A 3mx0_A* 3mbw_A*

Probab=91.24  E-value=0.061  Score=62.62  Aligned_cols=36  Identities=28%  Similarity=0.529  Sum_probs=29.4

Q ss_pred             ccCCCCcc--CccceeCCCCcccCCCCCCCCccccCCCCC
Q 002008          804 KKCPKGLY--GTFCKECPIGTYKDMEGSDESLCTPCSLEL  841 (983)
Q Consensus       804 ~~CP~Gly--G~fC~eCP~GtYK~~~Gs~~~lC~pC~~~~  841 (983)
                      =.|.+||.  +.-|+.||.||||...+  ...|.+||.+.
T Consensus       265 C~C~~G~e~~~~~C~aC~~g~~k~~~~--~~~C~~CP~~S  302 (536)
T 3fl7_A          265 CLCQAGYEKVEDACQACSPGFFKFEAS--ESPCLECPEHT  302 (536)
T ss_dssp             CEECTTEEEETTEEEECCTTEECCSCC--SSCCEECCSSE
T ss_pred             EeccCccccCCceeeecCCCCCcccCC--CCccccCCCCC
Confidence            35899996  66799999999999753  47799999754

>1ext_A Tumor necrosis factor receptor; binding protein, cytokine, signalling protein; 1.85A {Homo sapiens} SCOP: g.24.1.1 g.24.1.1 g.24.1.1 PDB: 1ft4_A* 1ncf_A 1tnr_R

Probab=90.61  E-value=0.16  Score=50.25  Aligned_cols=63  Identities=29%  Similarity=0.600  Sum_probs=38.3

Q ss_pred             EcccCCCCcc------C----ccceeCCCCcccCCCCCCCCccccCCCCCCCCcceeEEeeCC--ccCCCCCcccccccc
Q 002008          802 TGKKCPKGLY------G----TFCKECPIGTYKDMEGSDESLCTPCSLELLPRRANFIYVRGG--VSQPFCPYECISEKY  869 (983)
Q Consensus       802 ~~~~CP~Gly------G----~fC~eCP~GtYK~~~Gs~~~lC~pC~~~~~P~ra~~~yv~~G--~~~~~Cpy~C~sdk~  869 (983)
                      -=+.||+|+|      +    ..|++||.|||...... ...|++|..=. + ....+.++..  ...+.|  .|.+++|
T Consensus        19 CC~~CppG~~~~~~Ct~~~~~t~C~~C~~gty~~~~n~-~~~C~~C~~C~-~-~~~~~~~~~Ct~t~dt~C--~C~~G~y   93 (162)
T 1ext_A           19 CCTKCHKGTYLYNDCPGPGQDTDCRECESGSFTASENH-LRHCLSCSKCR-K-EMGQVEISSCTVDRDTVC--GCRKNQY   93 (162)
T ss_dssp             EEECBCTTEEEEECCSSTTSCCEEEECCTTEECCSSBC-CSSCEECCCCC-G-GGTCEEEECCBTTBCCEE--ECCTTEE
T ss_pred             CCCCCCCCcccccccCCCCCCcccccCCCCccccccCC-CCcccccCCCC-C-CCCEEEEecccCCCCCCc--cCCCCce
Confidence            3578888886      2    45999999999998533 35688887411 1 1122222222  234457  6777776

>3me4_A Tumor necrosis factor receptor superfamily member; RANK, rankl, rankl-RANK complex, tnfsf11, tnfrsf11A, TNF SUP signaling protein; 2.01A {Mus musculus} PDB: 3me2_R 3qbq_B 4giq_R* 3nzy_B

Probab=90.20  E-value=0.19  Score=52.30  Aligned_cols=65  Identities=20%  Similarity=0.392  Sum_probs=40.8

Q ss_pred             eEEcccCCCCcc---------CccceeCCCCcccCCCCCCCCccccCCCCCCCCcceeEEeeCC--ccCCCCCccccccc
Q 002008          800 TVTGKKCPKGLY---------GTFCKECPIGTYKDMEGSDESLCTPCSLELLPRRANFIYVRGG--VSQPFCPYECISEK  868 (983)
Q Consensus       800 Ti~~~~CP~Gly---------G~fC~eCP~GtYK~~~Gs~~~lC~pC~~~~~P~ra~~~yv~~G--~~~~~Cpy~C~sdk  868 (983)
                      ..-=+.||+|+|         ...|++||.|||+..... ...|++|+.  =.....++.++..  ...+.|  .|.+++
T Consensus        43 ~~CC~~CppG~~~~~~Ct~~~~t~C~pC~~gtY~~~~n~-~~~C~~C~~--C~~~~~~~~~~~Ct~t~dtvC--~C~~G~  117 (216)
T 3me4_A           43 GRCCSRCEPGKYLSSKCTPTSDSVCLPCGPDEYLDTWNE-EDKCLLHKV--CDAGKALVAVDPGNHTAPRRC--ACTAGY  117 (216)
T ss_dssp             TEEEECBCTTEEEEECCBTTBCCEEEECCTTEECCSSBC-CSSCEECCC--CCGGGTEEEESTTCSSSCCEE--EECTTE
T ss_pred             CCCcCCCCCCceecccCCCCCCCccccCCCCCeecCCCC-CCcCCCCCC--CCCCcCeEEEecCCCCCCccc--cCCCCe
Confidence            345688999997         456999999999986321 366888885  2222234444433  223345  377777


Q ss_pred             c
Q 002008          869 Y  869 (983)
Q Consensus       869 ~  869 (983)
                      |
T Consensus       118 y  118 (216)
T 3me4_A          118 H  118 (216)
T ss_dssp             E
T ss_pred             E
Confidence            6

>1du3_A Death receptor 5; trail, DR5, complex; 2.20A {Homo sapiens} SCOP: g.24.1.1 g.24.1.1 g.24.1.1 PDB: 1d0g_R 2h9g_R 1za3_R 1d4v_A

Probab=89.79  E-value=0.24  Score=47.56  Aligned_cols=64  Identities=20%  Similarity=0.467  Sum_probs=41.6

Q ss_pred             eEEcccCCCCcc----CccceeCCCC-cccCCCCCCCCccccCCCCCCCCcceeEEeeCC--ccCCCCCccccccccc
Q 002008          800 TVTGKKCPKGLY----GTFCKECPIG-TYKDMEGSDESLCTPCSLELLPRRANFIYVRGG--VSQPFCPYECISEKYR  870 (983)
Q Consensus       800 Ti~~~~CP~Gly----G~fC~eCP~G-tYK~~~Gs~~~lC~pC~~~~~P~ra~~~yv~~G--~~~~~Cpy~C~sdk~~  870 (983)
                      .+.-+.||+|+|    -..|++||.| +|...... ...|++|..  =+.  .+..++..  ...+.|.  |.+++|.
T Consensus        22 ~~~C~~CppG~~~~~~~t~C~pC~~g~ty~~~~n~-~~~C~~C~~--C~~--g~~~~~~Ct~t~dtvC~--C~~G~y~   92 (130)
T 1du3_A           22 SPSEGLCPPGHHISEDGRDCISCKYGQDYSTHWND-LLFCLRCTR--CDS--GEVELSPCTTTRNTVCQ--CEEGTFR   92 (130)
T ss_dssp             CCBTTBBCTTEEECSSSSCEEECCTTTEECCSSBC-CSSCEECCC--CCT--TEEEEECCCSSSCCEEE--ECTTCEE
T ss_pred             CCccCCCCCCceecCCCCcCccCCCcCEEeCCCCC-CCcCcCCCC--CCc--ceeeeccCCCCCCCEec--CCCCeEE
Confidence            345688999997    4679999999 99886422 345887774  222  23323222  3445687  8888873

>3alq_R Tumor necrosis factor receptor superfamily member; ligand-receptor complex, cytokine, cytokine-cytokine recepto; 3.00A {Homo sapiens}

Probab=89.44  E-value=0.25  Score=49.26  Aligned_cols=63  Identities=21%  Similarity=0.432  Sum_probs=40.1

Q ss_pred             EEcccCCCCcc---------CccceeCCCCcccCCCCCCCCccccCCCCCCCCcceeEEeeCC--ccCCCCCcccccccc
Q 002008          801 VTGKKCPKGLY---------GTFCKECPIGTYKDMEGSDESLCTPCSLELLPRRANFIYVRGG--VSQPFCPYECISEKY  869 (983)
Q Consensus       801 i~~~~CP~Gly---------G~fC~eCP~GtYK~~~Gs~~~lC~pC~~~~~P~ra~~~yv~~G--~~~~~Cpy~C~sdk~  869 (983)
                      .-=+.||+|+|         ...|++||.|||+...+.. ..|++|... =+. ..|+ ++..  ...+.|  .|.+++|
T Consensus        20 ~cC~~C~pG~~~~~~C~~~~~t~C~~C~~gty~~~~n~~-~~C~~C~~~-C~~-g~~~-~~~Ct~t~d~~C--~C~~G~y   93 (173)
T 3alq_R           20 MCCSKCSPGQHAKVFCTKTSDTVCDSCEDSTYTQLWNWV-PECLSCGSR-CSS-DQVE-TQACTREQNRIC--TCRPGWY   93 (173)
T ss_dssp             EEEECBCTTEEEEECCCSSCCCEEEECCTTEECCSSBCC-SSCEECCCC-CCT-TEEE-EECCCSSSCCEE--EECTTEE
T ss_pred             cCCCCCCCCCeecccCCCCCCCcCCcCCCCccccCCCCC-CccCCCCCc-CCC-CCEE-ecCCCCCCCCee--ECCCCeE
Confidence            34578899986         3459999999999875332 479988731 111 2333 2222  334568  5888887

>3u3p_A Tumor necrosis factor receptor superfamily member; trigger apoptosis, apoptosis; 2.09A {Homo sapiens} PDB: 3u3q_A 3u3s_A 3u3t_A 3u3v_A 3qo4_A

Probab=89.33  E-value=0.21  Score=54.86  Aligned_cols=39  Identities=38%  Similarity=0.872  Sum_probs=28.4

Q ss_pred             eEEcccCCCCcc---------CccceeCCCCcccCCCCCCCCccccCCC
Q 002008          800 TVTGKKCPKGLY---------GTFCKECPIGTYKDMEGSDESLCTPCSL  839 (983)
Q Consensus       800 Ti~~~~CP~Gly---------G~fC~eCP~GtYK~~~Gs~~~lC~pC~~  839 (983)
                      .+-=+.||+|+|         ...|++||.|+|+.... ....|.+|..
T Consensus        23 ~~CC~~CpPGtyv~~~Ct~~~dt~C~pCp~GtYt~~~N-~~~~C~~C~~   70 (313)
T 3u3p_A           23 VLTCDKCPAGTYVSEHCTNTSLRVCSSCPVGTFTRHEN-GIEKCHDCSQ   70 (313)
T ss_dssp             EEEEECBCTTEEEEECCBTTBCCEEEECCTTEECCSCB-CCSSCEECCC
T ss_pred             CCCCCCCCCCceecCcCCCCCCCccccCCCCceeccCC-CCCcCccccc
Confidence            345577888887         45699999999999731 1357888773

>3k51_B Decoy receptor 3; DCR3, TL1A, TNF, TNFR, immunity, cytokine, D bond, glycoprotein, membrane, secreted, signal-anchor, transmembrane, apoptosis; 2.45A {Homo sapiens} PDB: 3mi8_D 3mhd_D

Probab=88.96  E-value=0.27  Score=49.57  Aligned_cols=63  Identities=21%  Similarity=0.446  Sum_probs=39.1

Q ss_pred             EEcccCCCCcc---------CccceeCCCCcccCCCCCCCCccccCCCCCCCCcceeEEeeCC--ccCCCCCcccccccc
Q 002008          801 VTGKKCPKGLY---------GTFCKECPIGTYKDMEGSDESLCTPCSLELLPRRANFIYVRGG--VSQPFCPYECISEKY  869 (983)
Q Consensus       801 i~~~~CP~Gly---------G~fC~eCP~GtYK~~~Gs~~~lC~pC~~~~~P~ra~~~yv~~G--~~~~~Cpy~C~sdk~  869 (983)
                      +-=+.||+|+|         ...|++||.|+|+...- ....|++|...- .  ...+.++.-  ...+.|  .|.+++|
T Consensus        20 ~cC~~CppG~~~~~~Ct~~~~t~C~pC~~gtY~~~~n-~~~~C~~C~~~C-~--~~~~~~~~Ct~tsdtvC--~C~~G~~   93 (176)
T 3k51_B           20 LVCAQCPPGTFVQRPCRRDSPTTCGPCPPRHYTQFWN-YLERCRYCNVLC-G--EREEEARACHATHNRAC--RCRTGFF   93 (176)
T ss_dssp             EEEECBCTTEEEEECCCSSSCCEEEECCTTEECCSCB-CCSSCEECCCCC-C--SSEEEEECCBTTBCCEE--EECTTEE
T ss_pred             CCCCCCCCCceeCccCCCCCCCccccCCCCCeecCCC-CCCcCccccCcC-C--CCCEEeccCcCCCCcee--eccCCee
Confidence            44467777776         45799999999998631 235799997411 1  123333322  334457  6888877

>3urf_Z Tumor necrosis factor receptor superfamily member; cystein-rich domain, beta-sandwich, cytokine; HET: NAG; 2.70A {Homo sapiens} PDB: 4e4d_R

Probab=87.99  E-value=0.2  Score=50.42  Aligned_cols=35  Identities=31%  Similarity=0.758  Sum_probs=27.5

Q ss_pred             ccCCCCcc---------CccceeCCCCcccCCCCCCCCccccCCC
Q 002008          804 KKCPKGLY---------GTFCKECPIGTYKDMEGSDESLCTPCSL  839 (983)
Q Consensus       804 ~~CP~Gly---------G~fC~eCP~GtYK~~~Gs~~~lC~pC~~  839 (983)
                      +.||+|++         ...|++||.|||++.. ++...|+||+.
T Consensus       101 t~C~~G~~v~~~~t~~~dt~C~~C~~Gtfs~~~-ss~~~C~p~T~  144 (171)
T 3urf_Z          101 RSCPPGFGVVQAGTPERNTVCKRCPDGFFSNET-SSKAPCRKHTN  144 (171)
T ss_dssp             CCBCTTEEEEECCCSSSCCEEEECCTTEECSSC-BSSCCCEECCC
T ss_pred             CcCCCCceEeecCccCCCcccccCCCCcccCCC-CCCCccccCCc
Confidence            67899984         3559999999999974 44678999875

>2e4u_A Metabotropic glutamate receptor 3; G-protein-coupled receptor, neuron, central nerve system, SI protein; HET: NAG GLU; 2.35A {Rattus norvegicus} PDB: 2e4v_A* 2e4w_A* 2e4x_A* 2e4y_A*

Probab=86.90  E-value=0.13  Score=58.70  Aligned_cols=39  Identities=23%  Similarity=0.429  Sum_probs=29.6

Q ss_pred             EcccCCCCccC---------ccceeCCCCcccCCCCCCCCccccCCCCCCCC
Q 002008          802 TGKKCPKGLYG---------TFCKECPIGTYKDMEGSDESLCTPCSLELLPR  844 (983)
Q Consensus       802 ~~~~CP~GlyG---------~fC~eCP~GtYK~~~Gs~~~lC~pC~~~~~P~  844 (983)
                      =...|||||+.         .-|++||-|.|.  +  |...|.+||.+..|+
T Consensus       485 CS~~C~pG~rk~~~~g~~CC~~C~~C~~~~~~--t--d~~~C~~Cp~~~wpn  532 (555)
T 2e4u_A          485 CSDPCAPNEMKNMQPGDVCCWICIPCEPYEYL--V--DEFTCMDCGPGQWPT  532 (555)
T ss_dssp             SSCCCCTTTEEEECCSSSSCCEEEECCTTEEE--E--ETTEEEECCTTEEEC
T ss_pred             eCCCCCCCeeeeecCCCeeEEECccCCCceec--C--CCccceeCCcccCcC
Confidence            34789999952         229999999997  3  778999999755443

>3qd6_R CD40L receptor, tumor necrosis factor receptor superfamily member; immune regulator, cytokine-cytokine receptor compl; HET: NAG; 3.50A {Homo sapiens}

Probab=86.52  E-value=0.51  Score=47.32  Aligned_cols=62  Identities=18%  Similarity=0.302  Sum_probs=37.0

Q ss_pred             cccCCCCcc---------CccceeCCCCcccCCCCCCCCccccCCCCCCCCcceeEEeeCC--ccCCCCCcccccccc
Q 002008          803 GKKCPKGLY---------GTFCKECPIGTYKDMEGSDESLCTPCSLELLPRRANFIYVRGG--VSQPFCPYECISEKY  869 (983)
Q Consensus       803 ~~~CP~Gly---------G~fC~eCP~GtYK~~~Gs~~~lC~pC~~~~~P~ra~~~yv~~G--~~~~~Cpy~C~sdk~  869 (983)
                      =+.||+|+|         ...|++||.|+|+..... ...|++|..  =+....++.++..  ...+.|.  |.+++|
T Consensus        18 C~~CppG~~~~~~C~~~~~t~C~pC~~gty~~~~n~-~~~C~~C~~--C~~~~g~~~~~~Ct~t~d~~C~--C~~G~~   90 (177)
T 3qd6_R           18 CSLCQPGQKLVSDCTEFTETECLPCGESEFLDTWNR-ETHCHQHKY--CDPNLGLRVQQKGTSETDTICT--CEEGWH   90 (177)
T ss_dssp             ECCBCTTBCCCBCCCSSCCCBCCBCCSSEECCSSBC-CSSCEECCC--CCGGGTEEEEECCCTTSCCEEE--ECTTEE
T ss_pred             CCCCCCCCEeccCCCCCCCCccccCCCCceecCCCC-CCcCCCCCc--CCCcCCeEEecCCcCCCCceee--cCCCcE
Confidence            477888886         356999999999986311 246888874  2222123333322  2334465  777776

>2hey_R Tumor necrosis factor receptor superfamily member; cytokine, receptor-ligan complex, CO-stimulator, TNFSF; 2.00A {Homo sapiens} SCOP: g.24.1.1 g.24.1.1 g.24.1.1 PDB: 2hev_R

Probab=86.51  E-value=0.26  Score=47.77  Aligned_cols=32  Identities=28%  Similarity=0.753  Sum_probs=25.2

Q ss_pred             cCCCCcc-------CccceeCCCCcccCCCCCCCCccccCCC
Q 002008          805 KCPKGLY-------GTFCKECPIGTYKDMEGSDESLCTPCSL  839 (983)
Q Consensus       805 ~CP~Gly-------G~fC~eCP~GtYK~~~Gs~~~lC~pC~~  839 (983)
                      .|++|||       ..-|++||.|||++..   ...|+||++
T Consensus        84 ~C~~G~y~~~g~~~~~~C~~C~~Gtfs~~~---~~~C~~~t~  122 (146)
T 2hey_R           84 RCRAGTQPLDSYKPGVDCAPCPPGHFSPGD---NQACKPWTN  122 (146)
T ss_dssp             EECTTEEESCSSSTTSSEEECCTTEECCST---TCCCEECCC
T ss_pred             cCCCCeeeCCCcccCcccccCCCCcccCCC---CCCCcCCCC
Confidence            3788876       2459999999999962   568999985

>3k51_B Decoy receptor 3; DCR3, TL1A, TNF, TNFR, immunity, cytokine, D bond, glycoprotein, membrane, secreted, signal-anchor, transmembrane, apoptosis; 2.45A {Homo sapiens} PDB: 3mi8_D 3mhd_D

Probab=86.44  E-value=0.31  Score=49.13  Aligned_cols=35  Identities=34%  Similarity=0.741  Sum_probs=28.4

Q ss_pred             ccCCCCcc---------CccceeCCCCcccCCCCCCCCccccCCC
Q 002008          804 KKCPKGLY---------GTFCKECPIGTYKDMEGSDESLCTPCSL  839 (983)
Q Consensus       804 ~~CP~Gly---------G~fC~eCP~GtYK~~~Gs~~~lC~pC~~  839 (983)
                      +.||+|++         ...|++||.|||++.. ++...|+||.+
T Consensus       103 s~C~pG~~v~~~~t~~~Dt~C~~C~~GtFs~~~-s~~~~C~p~t~  146 (176)
T 3k51_B          103 ASCPPGAGVIAPGTPSQNTQCQPCPPGTFSASS-SSSEQCQPHRN  146 (176)
T ss_dssp             CCCCTTEEEEECCCSSSCCEEEECCTTEECCSC-SSSCCCEECCC
T ss_pred             ccCCCCcEEeecCcccCCCccccCCCCcccCCC-CCCCcccCCCc
Confidence            68999995         3569999999999975 34578999986

>3me4_A Tumor necrosis factor receptor superfamily member; RANK, rankl, rankl-RANK complex, tnfsf11, tnfrsf11A, TNF SUP signaling protein; 2.01A {Mus musculus} PDB: 3me2_R 3qbq_B 4giq_R* 3nzy_B

Probab=85.42  E-value=0.34  Score=50.41  Aligned_cols=35  Identities=29%  Similarity=0.691  Sum_probs=27.5

Q ss_pred             ccCCCCcc---------CccceeCCCCcccCCCCCCCCccccCCC
Q 002008          804 KKCPKGLY---------GTFCKECPIGTYKDMEGSDESLCTPCSL  839 (983)
Q Consensus       804 ~~CP~Gly---------G~fC~eCP~GtYK~~~Gs~~~lC~pC~~  839 (983)
                      +.||+|++         ...|++||.|||++.. ++...|+||+.
T Consensus       130 s~C~pG~~v~~~ct~~~Dt~C~~C~~GtFs~~~-s~~~~C~p~T~  173 (216)
T 3me4_A          130 TECAPGFGAQHPLQLNKDTVCTPCLLGFFSDVF-SSTDKCKPWTN  173 (216)
T ss_dssp             CCBCTTEEECSSEETTSCCCEEECCTTEECCSC-BSSCCCEECCC
T ss_pred             ccCCCCccccccCccCCCCccccCCCceecCCC-CCCCccccCCc
Confidence            58899984         4569999999999974 34568999985

>3alq_R Tumor necrosis factor receptor superfamily member; ligand-receptor complex, cytokine, cytokine-cytokine recepto; 3.00A {Homo sapiens}

Probab=84.82  E-value=0.36  Score=48.06  Aligned_cols=35  Identities=31%  Similarity=0.823  Sum_probs=24.2

Q ss_pred             ccCCCCcc---------CccceeCCCCcccCCCCCCCCccccCCC
Q 002008          804 KKCPKGLY---------GTFCKECPIGTYKDMEGSDESLCTPCSL  839 (983)
Q Consensus       804 ~~CP~Gly---------G~fC~eCP~GtYK~~~Gs~~~lC~pC~~  839 (983)
                      +.||+|++         ..-|++||.|||++.. ++...|+||++
T Consensus       109 ~~C~~G~~v~~~~t~~~dt~C~~C~~Gtfs~~~-s~~~~C~p~t~  152 (173)
T 3alq_R          109 RKCRPGFGVARPGTETSDVVCKPCAPGTFSNTT-SSTDICRPHQI  152 (173)
T ss_dssp             CCBCTTEEEEECCTTTSCCEEEECCTTEECCCC-BSSCCCEECCC
T ss_pred             CcCCCCeeEecCCcCCCCCcccCCCCCeecCCC-CCCccCCCCCC
Confidence            57888875         2348888888888764 33556777774

>1sg1_X Tumor necrosis factor receptor superfamily member 16; nerve growth factor, NGF, neurotrophin, common neurotrophin receptor; 2.40A {Rattus norvegicus} SCOP: g.24.1.1 g.24.1.1 g.24.1.1 g.24.1.1 PDB: 3buk_C* 3ij2_X

Probab=83.10  E-value=0.48  Score=46.44  Aligned_cols=35  Identities=40%  Similarity=0.888  Sum_probs=22.7

Q ss_pred             ccCCCCcc---------CccceeCCCCcccCCCCCCCCccccCCC
Q 002008          804 KKCPKGLY---------GTFCKECPIGTYKDMEGSDESLCTPCSL  839 (983)
Q Consensus       804 ~~CP~Gly---------G~fC~eCP~GtYK~~~Gs~~~lC~pC~~  839 (983)
                      +.||+|++         ...|++||.|||++... ....|++|+.
T Consensus        98 ~~C~~G~~v~~~ct~~~dt~C~~C~~Gtfs~~~~-~~~~C~~ct~  141 (161)
T 1sg1_X           98 SVCEVGSGLVFSCQDKQNTVCEECPEGTYSDEAN-HVDPCLPCTV  141 (161)
T ss_dssp             CCBCTTEEEEECCBTTBCCEEEECCTTEECCSCB-SSCCCEECCC
T ss_pred             ccCCCCCeecccCCCCCCCcccCCCCCceeCCCC-CCCcCCcCCC
Confidence            56777774         34588888888887642 1356777764

>1ext_A Tumor necrosis factor receptor; binding protein, cytokine, signalling protein; 1.85A {Homo sapiens} SCOP: g.24.1.1 g.24.1.1 g.24.1.1 PDB: 1ft4_A* 1ncf_A 1tnr_R

Probab=82.51  E-value=0.45  Score=47.00  Aligned_cols=37  Identities=30%  Similarity=0.783  Sum_probs=28.0

Q ss_pred             ccCCCCcc-----Ccc-ceeCCCCcccCCCC---CCCCccccCCCC
Q 002008          804 KKCPKGLY-----GTF-CKECPIGTYKDMEG---SDESLCTPCSLE  840 (983)
Q Consensus       804 ~~CP~Gly-----G~f-C~eCP~GtYK~~~G---s~~~lC~pC~~~  840 (983)
                      ..||.|+|     +.+ |+.||+|||.....   .....|.|||..
T Consensus         3 ~~C~~g~Y~~~~~~~~CC~~CppG~~~~~~Ct~~~~~t~C~~C~~g   48 (162)
T 1ext_A            3 SVCPQGKYIHPQNNSICCTKCHKGTYLYNDCPGPGQDTDCRECESG   48 (162)
T ss_dssp             CCCCTTEEECSSCTTCEEECBCTTEEEEECCSSTTSCCEEEECCTT
T ss_pred             ccCCCCceeccCCCCCCCCCCCCCcccccccCCCCCCcccccCCCC
Confidence            57999986     334 99999999987652   134679999974

>3u3p_A Tumor necrosis factor receptor superfamily member; trigger apoptosis, apoptosis; 2.09A {Homo sapiens} PDB: 3u3q_A 3u3s_A 3u3t_A 3u3v_A 3qo4_A

Probab=81.86  E-value=0.54  Score=51.71  Aligned_cols=35  Identities=31%  Similarity=0.636  Sum_probs=27.2

Q ss_pred             ccCCCCcc---------CccceeCCCCcccCCCCCCCCccccCCC
Q 002008          804 KKCPKGLY---------GTFCKECPIGTYKDMEGSDESLCTPCSL  839 (983)
Q Consensus       804 ~~CP~Gly---------G~fC~eCP~GtYK~~~Gs~~~lC~pC~~  839 (983)
                      +.||+|++         ...|+.||.|||++.. +....|++|+.
T Consensus       107 t~CppG~gV~~~cT~tsDTvC~~Cp~GTFSd~~-Ss~~~C~pcT~  150 (313)
T 3u3p_A          107 TVCPVGWGVRKKGTETEDVRCKQCARGTFSDVP-SSVMKCKAYTD  150 (313)
T ss_dssp             CCBCTTEEEEECCCSSSCCEEEECCTTEECCSC-BSSCCCEECCC
T ss_pred             ccCCCCCeeeecCCCCCCCccccCCCCeecCCC-CCCcccccCCc
Confidence            68888884         3579999999999964 23567999875

>3urf_Z Tumor necrosis factor receptor superfamily member; cystein-rich domain, beta-sandwich, cytokine; HET: NAG; 2.70A {Homo sapiens} PDB: 4e4d_R

Probab=81.60  E-value=0.55  Score=47.20  Aligned_cols=61  Identities=28%  Similarity=0.604  Sum_probs=36.8

Q ss_pred             cccCCCCcc---------CccceeCCCCcccCCCCCCCCccccCCCCCCCCcceeEEeeCC--ccCCCCCcccccccc
Q 002008          803 GKKCPKGLY---------GTFCKECPIGTYKDMEGSDESLCTPCSLELLPRRANFIYVRGG--VSQPFCPYECISEKY  869 (983)
Q Consensus       803 ~~~CP~Gly---------G~fC~eCP~GtYK~~~Gs~~~lC~pC~~~~~P~ra~~~yv~~G--~~~~~Cpy~C~sdk~  869 (983)
                      =+.||+|+|         ...|++||.|+|+.... ....|++|... -.. ..++ ++..  ...+.|.  |.+++|
T Consensus        20 C~~CppG~~~~~~Ct~~~~t~C~~C~~gty~~~~n-~~~~C~~C~~~-C~~-~~~~-~~~CT~tsdtvC~--C~~G~~   91 (171)
T 3urf_Z           20 CDKCPPGTYLKQHCTAKWKTVCAPCPDHYYTDSWH-TSDECLYCSPV-CKE-LQYV-KQECNRTHNRVCE--CKEGRY   91 (171)
T ss_dssp             EECBCTTEEEEECCCSSSCCEEEECCTTEECCSCB-CCSSCEECCCC-CCT-TEEE-EECCCSSSCCEEE--ECTTEE
T ss_pred             CCCCCCCceecccCCCCCCCccccCCCCcEecCCC-CCCccccCcCc-cCC-CCEE-eccCcCCCCcccc--CCCCcE
Confidence            356777775         45799999999998731 14679999831 111 1233 2222  2334464  888777

>1jma_B Herpesvirus entry mediator; V-type IG molecule and TNFR superfamily, viral protein; HET: NAG; 2.65A {Human herpesvirus 1} SCOP: g.24.1.1 g.24.1.1 PDB: 2aw2_B*

Probab=81.27  E-value=0.32  Score=48.28  Aligned_cols=7  Identities=29%  Similarity=0.952  Sum_probs=3.7

Q ss_pred             cCCCCcc
Q 002008          805 KCPKGLY  811 (983)
Q Consensus       805 ~CP~Gly  811 (983)
                      .|++|||
T Consensus        82 ~C~~G~y   88 (167)
T 1jma_B           82 GCSPGHF   88 (167)
T ss_dssp             EECTTEE
T ss_pred             cCCCCce
Confidence            4555554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	983
d1sg1x3	42	Low affinity neurotrophin receptor p75NTR {Rat (Ra	96.24
d1jmab1	56	Cellular receptor HveA {Human (Homo sapiens) [TaxI	93.69
d1exta1	59	Tumor necrosis factor (TNF) receptor {Human (Homo	92.21
d2heyr3	54	Tumor necrosis factor receptor superfamily member	91.85
d1jmab1	56	Cellular receptor HveA {Human (Homo sapiens) [TaxI	91.82
d1kloa1	55	Laminin gamma1 chain {Mouse (Mus musculus) [TaxId:	90.27
d2heyr3	54	Tumor necrosis factor receptor superfamily member	87.08

>d1sg1x3 g.24.1.1 (X:96-137) Low affinity neurotrophin receptor p75NTR {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Small proteins
fold: TNF receptor-like
superfamily: TNF receptor-like
family: TNF receptor-like
domain: Low affinity neurotrophin receptor p75NTR
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.24  E-value=0.00069  Score=52.31  Aligned_cols=30  Identities=40%  Similarity=0.808  Sum_probs=24.7

Q ss_pred             ccCCCCcc---------CccceeCCCCcccCCCCCCCCcc
Q 002008          804 KKCPKGLY---------GTFCKECPIGTYKDMEGSDESLC  834 (983)
Q Consensus       804 ~~CP~Gly---------G~fC~eCP~GtYK~~~Gs~~~lC  834 (983)
                      +.||+||.         ...|++||.|||+++. |+...|
T Consensus         3 s~CppG~GV~~~gt~~~DT~C~~C~~GtFSd~~-Ss~~~C   41 (42)
T d1sg1x3           3 SVCEVGSGLVFSCQDKQNTVCEECPEGTYSDEA-NHVDPC   41 (42)
T ss_dssp             CCBCTTEEEEECCBTTBCCEEEECCTTEECCSC-BSSCCC
T ss_pred             ccCCCCcCeeecCcCCCCceeeECcCCcccCcC-CCcCcc
Confidence            57999994         5679999999999997 555666

>d1jmab1 g.24.1.1 (B:4-59) Cellular receptor HveA {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: TNF receptor-like
superfamily: TNF receptor-like
family: TNF receptor-like
domain: Cellular receptor HveA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.69  E-value=0.012  Score=47.13  Aligned_cols=35  Identities=23%  Similarity=0.634  Sum_probs=18.7

Q ss_pred             CCCCcc---CccceeCCCCcccCCCCC--CCCccccCCCC
Q 002008          806 CPKGLY---GTFCKECPIGTYKDMEGS--DESLCTPCSLE  840 (983)
Q Consensus       806 CP~Gly---G~fC~eCP~GtYK~~~Gs--~~~lC~pC~~~  840 (983)
                      |++|.|   +.=|..||+|||......  ....|.|||..
T Consensus         1 C~~geY~~~~~CC~~CppG~~~~~~C~~~~~t~C~pC~~g   40 (56)
T d1jmab1           1 CKEDEYPVGSECCPKCSPGYRVKEACGELTGTVCEPCPPG   40 (56)
T ss_dssp             CCTTBCCBTTBCCBCBCTTEEEEECCCSSSCCEEEECCTT
T ss_pred             CCCCcEeCCCeEcCCCCCCceEcccCCCCCCCeeccCcCC
Confidence            556665   222777777777433211  12457777753

>d1exta1 g.24.1.1 (A:13-71) Tumor necrosis factor (TNF) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: TNF receptor-like
superfamily: TNF receptor-like
family: TNF receptor-like
domain: Tumor necrosis factor (TNF) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.21  E-value=0.021  Score=46.34  Aligned_cols=39  Identities=31%  Similarity=0.755  Sum_probs=27.5

Q ss_pred             cCCCCcc------CccceeCCCCcccCC--CCC-CCCccccCCCCCCC
Q 002008          805 KCPKGLY------GTFCKECPIGTYKDM--EGS-DESLCTPCSLELLP  843 (983)
Q Consensus       805 ~CP~Gly------G~fC~eCP~GtYK~~--~Gs-~~~lC~pC~~~~~P  843 (983)
                      .||.+-|      +.=|..||+|||...  +.+ ....|.|||..++-
T Consensus         2 ~C~~g~Y~~~~~~~~cC~~CppG~~~~~~Ct~~~~~t~C~pC~~gtyt   49 (59)
T d1exta1           2 VCPQGKYIHPQNNSICCTKCHKGTYLYNDCPGPGQDTDCRECESGSFT   49 (59)
T ss_dssp             CCCTTEEECSSCTTCEEECBCTTEEEEECCSSTTSCCEEEECCTTEEC
T ss_pred             CCCCccccccCCCCcCCCCCCCCCeecCccCCCCCCCEeccCCCCCcc
Confidence            6899966      233999999999543  233 34789999975443

>d2heyr3 g.24.1.1 (R:29-82) Tumor necrosis factor receptor superfamily member 4, OX40L receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: TNF receptor-like
superfamily: TNF receptor-like
family: TNF receptor-like
domain: Tumor necrosis factor receptor superfamily member 4, OX40L receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.85  E-value=0.027  Score=45.10  Aligned_cols=36  Identities=28%  Similarity=0.656  Sum_probs=21.1

Q ss_pred             CCCCcc---CccceeCCCCcccCCCCC--CCCccccCCCCC
Q 002008          806 CPKGLY---GTFCKECPIGTYKDMEGS--DESLCTPCSLEL  841 (983)
Q Consensus       806 CP~Gly---G~fC~eCP~GtYK~~~Gs--~~~lC~pC~~~~  841 (983)
                      |+.+-|   |.=|..||+|+|....-+  ....|.|||..+
T Consensus         3 C~~~eY~~~g~CC~~C~pG~~~~~~Cs~~~~t~C~pC~~gt   43 (54)
T d2heyr3           3 CVGDTYPSNDRCCHECRPGNGMVSRCSRSQNTVCRPCGPGF   43 (54)
T ss_dssp             BCSSEEEETTEEEECBCTTEEEEECCCSSCCCEEEECCTTE
T ss_pred             CCcCcCcCCCeECCCCCCCCeEcCcCCCCCCCeeccCcCCC
Confidence            556655   333778888888643322  224688887643

>d1jmab1 g.24.1.1 (B:4-59) Cellular receptor HveA {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: TNF receptor-like
superfamily: TNF receptor-like
family: TNF receptor-like
domain: Cellular receptor HveA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.82  E-value=0.04  Score=44.00  Aligned_cols=34  Identities=41%  Similarity=0.831  Sum_probs=25.8

Q ss_pred             cccCCCCcc---------CccceeCCCCcccCCCCCCCCccccC
Q 002008          803 GKKCPKGLY---------GTFCKECPIGTYKDMEGSDESLCTPC  837 (983)
Q Consensus       803 ~~~CP~Gly---------G~fC~eCP~GtYK~~~Gs~~~lC~pC  837 (983)
                      =+.||+|+|         ..-|++||.|||.... .....|.+|
T Consensus        13 C~~CppG~~~~~~C~~~~~t~C~pC~~gty~~~~-n~~~~C~~C   55 (56)
T d1jmab1          13 CPKCSPGYRVKEACGELTGTVCEPCPPGTYIAHL-NGLSKCLQC   55 (56)
T ss_dssp             CBCBCTTEEEEECCCSSSCCEEEECCTTEECSSC-BCSSCCEEC
T ss_pred             cCCCCCCceEcccCCCCCCCeeccCcCCCccCCC-CCCCccccC
Confidence            366777776         4679999999999864 224679988

>d1kloa1 g.3.11.2 (A:11-65) Laminin gamma1 chain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: Laminin-type module
domain: Laminin gamma1 chain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.27  E-value=0.044  Score=43.76  Aligned_cols=41  Identities=24%  Similarity=0.502  Sum_probs=33.3

Q ss_pred             CCceEEcccCCCCccCccceeCCCCcccCCCCCCCCccccCC
Q 002008          797 EVGTVTGKKCPKGLYGTFCKECPIGTYKDMEGSDESLCTPCS  838 (983)
Q Consensus       797 ~~GTi~~~~CP~GlyG~fC~eCP~GtYK~~~Gs~~~lC~pC~  838 (983)
                      ..++++=..|+++|.|..|+.|..|||-+.. .....|+||.
T Consensus        14 ~~~~~vC~~C~~~~~G~~Ce~C~~g~yg~P~-~~~g~C~pC~   54 (55)
T d1kloa1          14 KTKEVVCTHCPTGTAGKRCELCDDGYFGDPL-GSNGPVRLCR   54 (55)
T ss_dssp             SSCCEEECSCCTTEESTTSCEECTTEEEETT-CTTSSCEEEE
T ss_pred             CCCCEEcCCCCCCCccCcccccCCccccCcc-cCCCcCccCc
Confidence            4566666789999999999999999999875 2346799985

>d2heyr3 g.24.1.1 (R:29-82) Tumor necrosis factor receptor superfamily member 4, OX40L receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: TNF receptor-like
superfamily: TNF receptor-like
family: TNF receptor-like
domain: Tumor necrosis factor receptor superfamily member 4, OX40L receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.08  E-value=0.078  Score=42.33  Aligned_cols=30  Identities=30%  Similarity=0.709  Sum_probs=23.4

Q ss_pred             ccCCCCcc---------CccceeCCCCcccCCCCCCCCccc
Q 002008          804 KKCPKGLY---------GTFCKECPIGTYKDMEGSDESLCT  835 (983)
Q Consensus       804 ~~CP~Gly---------G~fC~eCP~GtYK~~~Gs~~~lC~  835 (983)
                      +.||||.|         ...|++||.|||+..  |+.+.|+
T Consensus        16 ~~C~pG~~~~~~Cs~~~~t~C~pC~~gtyt~~--~N~~~Ck   54 (54)
T d2heyr3          16 HECRPGNGMVSRCSRSQNTVCRPCGPGFYNDV--VSSKPCK   54 (54)
T ss_dssp             ECBCTTEEEEECCCSSCCCEEEECCTTEECCS--CBSSCCE
T ss_pred             CCCCCCCeEcCcCCCCCCCeeccCcCCCccCc--ccccccC
Confidence            67888875         577999999999987  4556564