Citrus Sinensis ID: 002016

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-
MAIRFIILTLLFLSSCTIPSLSLYEDQVGLMDWHQQYIGKVKHAVFHTQKTGRKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILVSSKGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQINAMNGELLNHETAAFSGGFVGDVALVSSDTLVTLDTTRSILVTVSFKNRKIAFQETHLSNLGEDSSGMVEILPSSLTGMFTVKINNYKLFIRLTSEDKLEVVHKVDHETVVSDALVFSEGKEAFAVVEHGGSKVDITVKPGQDWNNNLVQESIEMDHQRGLVHKVFINNYLRTDRSHGFRALIVMEDHSLLLVQQGKIVWNREDALASIIDVTTSELPVEKEGVSVAKVEHSLFEWLKGHMLKLKGTLMLASPEDVAAIQAIRLKSSEKSKMTRDHNGFRKLLIVLTKARKIFALHSGDGRVVWSLLLHKSEACDSPTELNLYQWQTPHHHAMDENPSVLVVGRCGVSSKAPAILSFVDTYTGKELNSFDLVHSAVQVMPLPFTDSTEQRLHLLVDDDRRIHLYPKTSEAISIFQQEFSNIYWYSVEADNGIIKGHAVKSKCAGEVLDDFCFETRVLWSIIFPMESEKIIAAVSRKQNEVVHTQAKVTSEQDVMYKYISKNLLFVATVAPKASGHIGSADPDEAWLVVYLIDTITGRILHRMTHHGAQGPVHAVLSENWVVYHYFNLRAHRYEMSVTEIYDQSRAENKDVLKLVLGKHNLTAPVSSYSRPEITTKSQTYFFTHSVKAVAVTSTAKGITSKQLLIGTIGDQVLALDKRFLDPRRSINPTQAEKEEGIIPLADSLPIIPQSYVTHSLKVEGLRGILTVPAKLESTTLVFAYGVDLFYTRLAPSRTYDSLTEDFSYALLLLTIVALVAAIFVTWVLSEKKELREKWR
cHHHHHHHHHHHHHHccccEEEEEEcccccEEEEEEEcccEEEEEEEcccccccEEEEEccccEEEEEEccccccccEEEcccccccccEEEEEccEEEEEEccccEEEEEEcccccEEEEEEccccccccccccccccEEEEccEEEEEEcccEEEEEEccccEEEEEEEccccccEEEEEEEEcccccEEEEEEEccccEEEEEEEcccccEEcEEEcccccccccEEEEEEccEEEEEEccccEEEEEEccccEEEEEEEEcccccccccccEEEcccccccEEEEEEEccEEEEEEcccccEEEEEEEccccEEEEEEEEcccccEEEEEEEcccEEEEEEEcccccccccEEEEEEEEcccccEEEEEEEEEEcccccccEEEEEEEEccEEEEEEccEEEEEEEEcccEEEEEEEEEccccccccHHHHHccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHccccccccccccccccEEEEEEEEcccEEEEEEcccccEEEEEEccccccccccccccEEEEEEccccccccccEEEEEEEEccccccccEEEEEEccccccccccccccccEEEEEEccccccccEEEEEEcccccEEEcccccHHHHHHHccccccEEEEEEccccEEEEEEEEcccccccccccEEEEEEEEEEEEcccccEEEEEEEcccccEEEEEEEEccccEEEEEcccccEEEEEEEccccccccccccccccEEEEEEEEcccccEEEEEEEcccccccEEEEEccEEEEEEEEccccEEEEEEEEEEcccccccccHHHHccccccccccccccccccEEEEEEEEEccccccEEEEEEEccccccccEEEEEccccEEEEEcccccccccccccccccccccccccccccccccccEEEEEEEcccccEEEEccccccEEEEEEEcccEEEEEEccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
cHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHcccccEEEEccccccccEEEEEEcccEEEEEccccccEEEEEEEcccccccccEcccccEEEEEEccccEEEEEEccccEEEEEEEcccccccccEEEcccccEEEccccEEEEcccEEEEEEcccccEEEEEEcccccccEEEEEEEccccEEEEEEEcccccEEEEEEEcccccEEccEcccccccccccEEEccccEEEEEcccccEEEEEEEEcccEEEEEccccHccccccccccccccccccEEEEEccccEEEEEEcccccEEEEEEcccHHHHHccccccccccEEEEEEEcccEEEEEEEccccccccccccEEccccccccccEEEEEEEEEcccccEEEEEEEEccccEEEEEccEEEEEcHHHHHHHHEEEEEcccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccEEEEEEEcccEEEEEEccccEEEEEEEccccccccccccEEEEEEEEccccccccccEEEEEEcccccccccEEEEEEccccccEcccccccccEEEEEEEEcccccccEEEEEEccccEEEEcccccHHHHHHHHHcccEEEEEEEccccEEEEEEEEcccccccccccccEEEEEEEEEccccccEEEEEEccccccccccccEEccccHEHHHEccccEEEEEEEccccccccccccccccEEEEEEEEccccEEEEEEEcccccccEEEEEEccEEEEEEEccccccEEEEEEEEEccccccccccccccccccccccccccccccccEEEEEEEEccHHHHHEEEEEccccccccEEEEEcccccEEEccHHHccccccccccHHHHHcccccccccccccccHEEEcccEEcccccEEEcccccccEEEEEEEcccEEEEEEccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
MAIRFIILTLLFlssctipslslyeDQVGLMDWHQQYIGKVKHAVFHtqktgrkrVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITlssdgstlrawnlpdgqmvWESFlrgskhskplllvptnlkvdkdslilVSSKgclhavssidgeilwtrDFAAESVEVQQVIqldesdqiYVVGYAGSSQFHAYQINAMNgellnhetaafsggfvGDVALVSSDTLVTLDTTRSILVTVSFKNRKIAFQETHlsnlgedssgmveilpssltgmFTVKINNYKLFIRLTSEDKLEVVHKVDHETVVSDALVFSEGKEAFAVVEhggskvditvkpgqdwnnNLVQESIEMDHQRGLVHKVFINNylrtdrshGFRALIVMEDHSLLLVQQGKIVWNREDALASIIDvttselpvekegVSVAKVEHSLFEWLKGHMLKLKgtlmlaspEDVAAIQAIRLKSsekskmtrdhNGFRKLLIVLTKARKIFALHSGDGRVVWSLLLHkseacdsptelnlyqwqtphhhamdenpsvlvvgrcgvsskapaiLSFVdtytgkelnsfDLVHSAvqvmplpftdsteQRLHLlvdddrrihlypktsEAISIFQQEFSNIYWYSVeadngiikghavkskcagevldDFCFETRVLWSIIFPMESEKIIAAVSRKQNEVVHTQAKVTSEQDVMYKYISKNLLFVAtvapkasghigsadpdEAWLVVYLIDTITGRILHrmthhgaqgpvhavLSENWVVYHYFNLRAHRYEMSVTEIYDQSRAENKDVLKLVLGkhnltapvssysrpeittksqTYFFTHSVKAVAVTstakgitskqlliGTIGDQVLALdkrfldprrsinptqaekeegiipladslpiipqsyvthslkveglrgiltvpaklestTLVFAYGVDlfytrlapsrtydslTEDFSYALLLLTIVALVAAIFVTWVLSEKKELREKWR
MAIRFIILTLLFLSSCTIPSLSLYEDQVGLMDWHQQYIGKVKHAVFhtqktgrkrvvvstEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILVSSKGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQINAMNGELLNHETAAFSGGFVGDVALVSSDTLVTLDTTRSIlvtvsfknrkIAFQEthlsnlgedssGMVEILPSSLTGMFTVKINNYKLFIRLTSEDKLEVVHKVDHETVVSDALVFSEGKEAFAVVEHggskvditvkpgqDWNNNLVQESIEMDHQRGLVHKVFINNYLRTDRSHGFRALIVMEDHSLLLVQQGKIVWNREDALASIIDvttselpvekegVSVAKVEHSLFEWLKGHMLKLKGTLMLASPEDVAAIQAIRlkssekskmtrdhngfRKLLIVLTKARKIFALHSGDGRVVWSLLLHKSEACDSPTELNLYQWQTPHHHAMDENPSVLVVGRCGVSSKAPAILSFVDTYTGKELNSFDLVHSAVQVMPLPFTDSTEQRLHLLVDDDRRIHLYPKTSEAISIFQQEFSNIYWYSVEADNGIIKGHAVKSKCAGEVLDDFCFETRVLWSIIFPMESEKIIAAVsrkqnevvhtqakvtseqdVMYKYISKNLLFVATVAPKASGhigsadpdEAWLVVYLIDTITGRILHRMTHHGAQGPVHAVLSENWVVYHYFNLRAHRYEMSVTEIYDQSRAENKDVLKLVLGKHnltapvssysrpeITTKSQTYFFTHSVKAVAVTstakgitskqlligTIGDQVLALDKRFLDPRrsinptqaekeegiipladslPIIPQSYVTHSLKVEGLRGILTVPAKLESTTLVFAYGVDLFYTRLAPSRTYDSLTEDFSYALLLLTIVALVAAIFVTWVlsekkelrekwr
MAIRFIILTLLFLSSCTIPSLSLYEDQVGLMDWHQQYIGKVKHAVFHTQKTGRKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILVSSKGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQINAMNGELLNHETAAFSGGFVGDVALVSSDTLVTLDTTRSILVTVSFKNRKIAFQETHLSNLGEDSSGMVEILPSSLTGMFTVKINNYKLFIRLTSEDKLEVVHKVDHETVVSDALVFSEGKEAFAVVEHGGSKVDITVKPGQDWNNNLVQESIEMDHQRGLVHKVFINNYLRTDRSHGFRALIVMEDHSLLLVQQGKIVWNREDALASIIDVTTSELPVEKEGVSVAKVEHSLFEWLKGHMLKLKGTLMLASPEDVAAIQAIRLKSSEKSKMTRDHNGFRKLLIVLTKARKIFALHSGDGRVVWSLLLHKSEACDSPTELNLYQWQTPHHHAMDENPSVLVVGRCGVSSKAPAILSFVDTYTGKELNSFDLVHSAVQVMPLPFTDSTEQRLHLLVDDDRRIHLYPKTSEAISIFQQEFSNIYWYSVEADNGIIKGHAVKSKCAGEVLDDFCFETRVLWSIIFPMESEKIIAAVSRKQNEVVHTQAKVTSEQDVMYKYISKNLLFVATVAPKASGHIGSADPDEAWLVVYLIDTITGRILHRMTHHGAQGPVHAVLSENWVVYHYFNLRAHRYEMSVTEIYDQSRAENKDVLKLVLGKHNLTAPVSSYSRPEITTKSQTYFFTHSVKAVAVTSTAKGITSKQLLIGTIGDQVLALDKRFLDPRRSINPTQAEKEEGIIPLADSLPIIPQSYVTHSLKVEGLRGILTVPAKLESTTLVFAYGVDLFYTRLAPSRTYDSLTEDFSYalllltivalvaaiFVTWVLSEKKELREKWR
**IRFIILTLLFLSSCTIPSLSLYEDQVGLMDWHQQYIGKVKHAVFHTQKTGRKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILVSSKGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQINAMNGELLNHETAAFSGGFVGDVALVSSDTLVTLDTTRSILVTVSFKNRKIAFQETHLSNLGEDSSGMVEILPSSLTGMFTVKINNYKLFIRLTSEDKLEVVHKVDHETVVSDALVFSEGKEAFAVVEHGGSKVDITVKPGQDWNNNLVQESIEMDHQRGLVHKVFINNYLRTDRSHGFRALIVMEDHSLLLVQQGKIVWNREDALASIIDVTTSELPVEKEGVSVAKVEHSLFEWLKGHMLKLKGTLMLASPEDVAAIQAIR*************NGFRKLLIVLTKARKIFALHSGDGRVVWSLLLHKSEACDSPTELNLYQWQTPHHHAMDENPSVLVVGRCGVSSKAPAILSFVDTYTGKELNSFDLVHSAVQVMPLPFTDSTEQRLHLLVDDDRRIHLYPKTSEAISIFQQEFSNIYWYSVEADNGIIKGHAVKSKCAGEVLDDFCFETRVLWSIIFPMESEKIIAAVSRKQNEVVHTQAKVTSEQDVMYKYISKNLLFVATVAPKASGHIGSADPDEAWLVVYLIDTITGRILHRMTHHGAQGPVHAVLSENWVVYHYFNLRAHRYEMSVTEIYDQSRAENKDVLKLVLGKHNLTAPVSSYSRPEITTKSQTYFFTHSVKAVAVTSTAKGITSKQLLIGTIGDQVLALDKRFLD**************GIIPLADSLPIIPQSYVTHSLKVEGLRGILTVPAKLESTTLVFAYGVDLFYTRLAPSRTYDSLTEDFSYALLLLTIVALVAAIFVTWVLS**********
**IRFIILTLLFLSSCTIPSLSLYEDQVGLMDWHQQYIGKVKHAVFHTQKTGRKRVVVSTEENVIASLDLRHGEIFWRHVLGI****DGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILVSSKGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQINAMNGELLNHETAAFSGGFVGDVALVSSDTLVTLDTTRSILVTVSFKNRKIAFQETHLSNLGEDSSGMVEILPSSLTGMFTVKINNYKLFIRLTSEDKLEVVHKVDHETVVSDALVFSEGKEAFAVVEHGGSKVDITVKPGQDWNNNLVQESIEMDHQRGLVHKVFINNYLRTDRSHGFRALIVMEDHSLLLVQQGKIVWNREDALASIIDVTTSELPVEK*******V**SLFEWLKGHMLKLKGTLMLASPEDV********************NGFRKLLIVLTKARKIFALHSGDGRVVWSLLLHKSEACDSPTELNLYQWQTPHHHAMDENPSVLVVGRCGVSSKAPAILSFVDTYTG**********SAVQVMPLPFTDSTEQRLHLLVDDDRRIHLYPKTSEAISIFQQEFSNIYWYSVEADNGIIKGHAVKSK*******DFCFETRVLWSIIFPMESEKIIAA*S******VHTQAKVTSEQDVMYKYISKNLLFVATVAPKASGHIGSADPDEAWLVVYLIDTITGRILHRMTHHGAQGPVHAVLSENWVVYHYFNLRAHRYEMSVTEIYDQSRA**********************SRPEITTKSQTYFFTHSVKAVAVTSTAKGITSKQLLIGTIGDQVLALDKRFLDPRR************IIPLADSLPIIPQSYVTHSLKVEGLRGILTVPAKLESTTLVFAYGVDLFYTRLAPSRTYDSLTEDFSYALLLLTIVALVAAIFVTWVLSEKKELREKW*
MAIRFIILTLLFLSSCTIPSLSLYEDQVGLMDWHQQYIGKVKHAVFHTQKTGRKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILVSSKGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQINAMNGELLNHETAAFSGGFVGDVALVSSDTLVTLDTTRSILVTVSFKNRKIAFQETHLSNLGEDSSGMVEILPSSLTGMFTVKINNYKLFIRLTSEDKLEVVHKVDHETVVSDALVFSEGKEAFAVVEHGGSKVDITVKPGQDWNNNLVQESIEMDHQRGLVHKVFINNYLRTDRSHGFRALIVMEDHSLLLVQQGKIVWNREDALASIIDVTTSELPVEKEGVSVAKVEHSLFEWLKGHMLKLKGTLMLASPEDVAAIQAIRLKSSEKSKMTRDHNGFRKLLIVLTKARKIFALHSGDGRVVWSLLLHKSEACDSPTELNLYQWQTPHHHAMDENPSVLVVGRCGVSSKAPAILSFVDTYTGKELNSFDLVHSAVQVMPLPFTDSTEQRLHLLVDDDRRIHLYPKTSEAISIFQQEFSNIYWYSVEADNGIIKGHAVKSKCAGEVLDDFCFETRVLWSIIFPMESEKIIAAVSRKQNEVVHTQAKVTSEQDVMYKYISKNLLFVATVAPKASGHIGSADPDEAWLVVYLIDTITGRILHRMTHHGAQGPVHAVLSENWVVYHYFNLRAHRYEMSVTEIYDQSRAENKDVLKLVLGKHNLTAPVSSYSRPEITTKSQTYFFTHSVKAVAVTSTAKGITSKQLLIGTIGDQVLALDKRFLDPRRSINPTQAEKEEGIIPLADSLPIIPQSYVTHSLKVEGLRGILTVPAKLESTTLVFAYGVDLFYTRLAPSRTYDSLTEDFSYALLLLTIVALVAAIFVTWVLSEK********
MAIRFIILTLLFLSSCTIPSLSLYEDQVGLMDWHQQYIGKVKHAVFHTQKTGRKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILVSSKGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQINAMNGELLNHETAAFSGGFVGDVALVSSDTLVTLDTTRSILVTVSFKNRKIAFQETHLSNLGEDSSGMVEILPSSLTGMFTVKINNYKLFIRLTSEDKLEVVHKVDHETVVSDALVFSEGKEAFAVVEHGGSKVDITVKPGQDWNNNLVQESIEMDHQRGLVHKVFINNYLRTDRSHGFRALIVMEDHSLLLVQQGKIVWNREDALASIIDVTTSELPVEKEGVSVAKVEHSLFEWLKGHMLKLKGTLMLASPEDVAAIQAIRL*****SKMTRDHNGFRKLLIVLTKARKIFALHSGDGRVVWSLLLHKSEACDSPTELNLYQWQTPHHHAMDENPSVLVVGRCGVSSKAPAILSFVDTYTGKELNSFDLVHSAVQVMPLPFTDSTEQRLHLLVDDDRRIHLYPKTSEAISIFQQEFSNIYWYSVEADNGIIKGHAVKSKCAGEVLDDFCFETRVLWSIIFPMESEKIIAAVSRKQNEVVHTQAKVTSEQDVMYKYISKNLLFVATVAPKASG*****DPDEAWLVVYLIDTITGRILHRMTHHGAQGPVHAVLSENWVVYHYFNLRAHRYEMSVTEIYDQS********KL********APVSSYSRPEITTKSQTYFFTHSVKAVAVTSTAKGITSKQLLIGTIGDQVLALDKRFLDPRRSINPTQAEKEEGIIPLADSLPIIPQSYVTHSLKVEGLRGILTVPAKLESTTLVFAYGVDLFYTRLAPSRTYDSLTEDFSYALLLLTIVALVAAIFVTWVLSEKKELREKWR
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiii
iiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiii
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MAIRFIILTLLFLSSCTIPSLSLYEDQVGLMDWHQQYIGKVKHAVFHTQKTGRKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILVSSKGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQINAMNGELLNHETAAFSGGFVGDVALVSSDTLVTLDTTRSILVTVSFKNRKIAFQETHLSNLGEDSSGMVEILPSSLTGMFTVKINNYKLFIRLTSEDKLEVVHKVDHETVVSDALVFSEGKEAFAVVEHGGSKVDITVKPGQDWNNNLVQESIEMDHQRGLVHKVFINNYLRTDRSHGFRALIVMEDHSLLLVQQGKIVWNREDALASIIDVTTSELPVEKEGVSVAKVEHSLFEWLKGHMLKLKGTLMLASPEDVAAIQAIRLKSSEKSKMTRDHNGFRKLLIVLTKARKIFALHSGDGRVVWSLLLHKSEACDSPTELNLYQWQTPHHHAMDENPSVLVVGRCGVSSKAPAILSFVDTYTGKELNSFDLVHSAVQVMPLPFTDSTEQRLHLLVDDDRRIHLYPKTSEAISIFQQEFSNIYWYSVEADNGIIKGHAVKSKCAGEVLDDFCFETRVLWSIIFPMESEKIIAAVSRKQNEVVHTQAKVTSEQDVMYKYISKNLLFVATVAPKASGHIGSADPDEAWLVVYLIDTITGRILHRMTHHGAQGPVHAVLSENWVVYHYFNLRAHRYEMSVTEIYDQSRAENKDVLKLVLGKHNLTAPVSSYSRPEITTKSQTYFFTHSVKAVAVTSTAKGITSKQLLIGTIGDQVLALDKRFLDPRRSINPTQAEKEEGIIPLADSLPIIPQSYVTHSLKVEGLRGILTVPAKLESTTLVFAYGVDLFYTRLAPSRTYDSLTEDFSYALLLLTIVALVAAIFVTWVLSEKKELREKWR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query981 2.2.26 [Sep-21-2011]
Q5ZL00983 ER membrane protein compl yes no 0.921 0.919 0.282 2e-99
Q8N766993 ER membrane protein compl yes no 0.926 0.915 0.287 8e-99
Q5R7K6996 ER membrane protein compl yes no 0.928 0.914 0.286 1e-96
Q8C7X2997 ER membrane protein compl yes no 0.914 0.899 0.281 1e-94
Q6NRB9987 ER membrane protein compl N/A no 0.923 0.917 0.270 2e-94
O13981885 ER membrane protein compl yes no 0.332 0.368 0.292 9e-35
P25574760 ER membrane protein compl yes no 0.355 0.459 0.248 2e-19
>sp|Q5ZL00|EMC1_CHICK ER membrane protein complex subunit 1 OS=Gallus gallus GN=EMC1 PE=2 SV=1 Back     alignment and function desciption
 Score =  364 bits (935), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 289/1023 (28%), Positives = 486/1023 (47%), Gaps = 119/1023 (11%)

Query: 23  LYEDQVGLMDWHQQYIGKVKHAVFHTQKTGRKRVVVSTEENVIASLDLRHGEIFWRHV-- 80
           +YEDQVG  DW QQY+GK+K A     + G K+++V TE+NV+A+L+ R GEI WRH   
Sbjct: 16  VYEDQVGKFDWRQQYVGKLKFASLEAAQ-GSKKLLVGTEKNVVAALNSRSGEILWRHADK 74

Query: 81  LGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFL-RGSKHSKPLLLVPTN 139
                 +D + I  G+  IT+SS G  LR+W    G + WE+ L  GS  +  L+ +   
Sbjct: 75  ATPEGAIDAMLIH-GQDAITVSSAGRILRSWETNIGGLNWETSLDTGSFQTASLVGLQDA 133

Query: 140 LKVDKDSLILVSSKGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGS 199
           +K      +L  +   LH +S  +G   W            Q++    +  I+V+G    
Sbjct: 134 VKY---VAVLKKAAISLHYLS--NGHQKWVEHLPESENTQYQMLYSRGAGVIHVLGVVPQ 188

Query: 200 SQFHAYQINAMNGELLNHETAAF--------SGGFVGDVALVSSDT------LVTLDTTR 245
           S      ++  +GE++     A         + G VG+  LV +DT      + +L+T +
Sbjct: 189 SHLKVLTLSVEDGEVIEQTKVAAPWLKSLNGACGVVGEAVLVCADTATHSLYVCSLETEQ 248

Query: 246 SIL----------VTVSFKNRKIAFQETHLSNLGEDSSGMVEILPSSLTGMFTVKINNYK 295
            +               F+ R +A Q + ++     +   +++ P    G F++      
Sbjct: 249 EMKQIPLQSLDLEFADGFQPRVLATQPSVIN--ASRTQFFLQLSP----GHFSLLQCKQG 302

Query: 296 LFIRLTSEDKLEVVH--KVDHETVVSDALVFSEGKEAFAVVEHGGS-----KVDITVKPG 348
           L   L    +  +V       +TV +     +E K A +   HG +     K +      
Sbjct: 303 LLSHLRDFQQAALVSFATTGEKTVAAVLTCRNELKPASSDGLHGNALEDSQKQEALTCSN 362

Query: 349 QDWNNNL-----------VQESIEMDHQRGLVHKVFINNYLRTDRSHGFRALIVMEDHSL 397
           Q +N NL              +  ++       +++I  +L+ D S G+RAL+  EDH L
Sbjct: 363 QTYNINLYLVETGQRLLDTTITFNLEQNGAKPEQLYIQVFLKKDDSVGYRALVQTEDHML 422

Query: 398 LLVQQ-GKIVWNREDALASIIDVTTSELPV-----EKEGVSVAKVEHSLFEWLKGHMLKL 451
           + +QQ GK+VW+RE++LA ++ +   +LP+     E EG    K +  L  +LK    +L
Sbjct: 423 MFLQQPGKVVWSREESLAEVVSLEMVDLPLTGAQAELEGEFGKKADGLLGMFLK----RL 478

Query: 452 KGTLMLASPEDV----AAIQAIRLKSSEKSK-----MTRDHNGFRKLLIVLTKARKIFAL 502
              L+L              A + +S  K++     + RD    +K+++++T + K+F +
Sbjct: 479 SSQLILLQAWTAHLWKMFYDARKPRSQIKNEINIDNLARDEFNLQKMMVMVTASGKLFGI 538

Query: 503 HSGDGRVVWSLLLHKSEACDSPTELNLYQWQTPHHHAMDENPSVLVVGRCGVSSKAPAIL 562
            S  G ++W   L       S   L L   +T  H       ++LV  +    +K   + 
Sbjct: 539 ESSSGTILWKQYLRNVRPGAS---LKLMVQRTTAHFPHPPQCTLLVKDK---ETKMSFLY 592

Query: 563 SFVDTYTGK-ELNSFDLVHSAVQVMPLPFTDSTEQRLHLLVDDDRRIHLYPKTSEAISIF 621
            F   +  + ++    L    +Q + LP  D    ++ LL+DD+ ++  +P T   +   
Sbjct: 593 VFNPIFGKRSQVAPPVLKRPVLQTLLLPIMDQDYAKVLLLIDDEYKVTAFPATKNVLRQL 652

Query: 622 QQEFSNIYWYSVEADNGIIKGHAVKSKCAGEVLDDFCFETRVLWSIIFPMESEKIIAAVS 681
           ++   +I++Y V+A+ G + G  +K              T   W +  P E ++I+    
Sbjct: 653 EEMAHSIFFYLVDAEQGKLSGFRLKKD----------LTTEESWQVAIPTEVQRIVTVKG 702

Query: 682 RKQNEVVHTQAKVTSEQDVMYKYISKNLLFVATVAPKASGHIGSADP--DEAWLVVYLID 739
           ++ +E VH+Q +V  ++ V+YK ++ NLL V T          S D   +  ++ +YLID
Sbjct: 703 KRSSEHVHSQGRVMGDRSVLYKSLNPNLLAVVT---------ESTDTHHERTFVGIYLID 753

Query: 740 TITGRILHRMTHHGAQGPVHAVLSENWVVYHYFNLRAHRYEMSVTEIYDQSRAENKDVLK 799
            +TGRI+H      A+GPVH V SENWVVY Y+N +A R E +V E+Y+ +         
Sbjct: 754 GVTGRIIHSSVQKKAKGPVHIVHSENWVVYQYWNTKARRNEFTVLELYEGTE-------- 805

Query: 800 LVLGKHNLTAPVSSYSRPEIT-TKSQTYFFTHSVKAVAVTSTAKGITSKQLLIGTIGDQV 858
               ++N TA  SS  RP +     Q+Y F  ++ A+  T T +GITS+ LLIG     +
Sbjct: 806 ----QYNATA-FSSLDRPLLPQVLQQSYIFPSAISAMEATITERGITSRHLLIGLPSGAI 860

Query: 859 LALDKRFLDPRRSINPTQAEKEEGIIPLADSLPIIPQSYVTHSLKVEGLRGILTVPAKLE 918
           L+L K  LDPRR   PT+  +EE +IP +  + I  + ++ ++  V  +RGI T P+ LE
Sbjct: 861 LSLPKALLDPRRPEIPTEQSREENLIPYSPDVQIHAERFINYNQTVSQIRGIYTSPSGLE 920

Query: 919 STTLVFAYGVDLFYTRLAPSRTYDSLTEDFSYALLLLTIVALVAAIFVTWVLSEKKELRE 978
           ST LV AYG+D++ TR+ PS+ +D L +D+ Y L+   +  LV A  +T  L++ K L  
Sbjct: 921 STCLVVAYGLDIYQTRVYPSKQFDVLKDDYDYVLISSVLFGLVFATMITKRLAQVKLLNR 980

Query: 979 KWR 981
            WR
Sbjct: 981 AWR 983

Gallus gallus (taxid: 9031)
>sp|Q8N766|EMC1_HUMAN ER membrane protein complex subunit 1 OS=Homo sapiens GN=EMC1 PE=1 SV=1 Back     alignment and function description
>sp|Q5R7K6|EMC1_PONAB ER membrane protein complex subunit 1 OS=Pongo abelii GN=EMC1 PE=2 SV=1 Back     alignment and function description
>sp|Q8C7X2|EMC1_MOUSE ER membrane protein complex subunit 1 OS=Mus musculus GN=Emc1 PE=1 SV=1 Back     alignment and function description
>sp|Q6NRB9|EMC1_XENLA ER membrane protein complex subunit 1 OS=Xenopus laevis GN=emc1 PE=2 SV=1 Back     alignment and function description
>sp|O13981|EMC1_SCHPO ER membrane protein complex subunit 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=emc1 PE=3 SV=1 Back     alignment and function description
>sp|P25574|EMC1_YEAST ER membrane protein complex subunit 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=EMC1 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query981
255551016983 catalytic, putative [Ricinus communis] g 0.998 0.996 0.763 0.0
225429981987 PREDICTED: uncharacterized protein KIAA0 1.0 0.993 0.757 0.0
224089040985 predicted protein [Populus trichocarpa] 0.983 0.979 0.743 0.0
356515591983 PREDICTED: uncharacterized protein KIAA0 0.974 0.972 0.724 0.0
356507901983 PREDICTED: uncharacterized protein KIAA0 0.978 0.976 0.726 0.0
145357905982 PQQ_DH domain-containing protein [Arabid 0.997 0.996 0.693 0.0
358344746982 hypothetical protein MTR_041s0018 [Medic 0.995 0.994 0.694 0.0
449513201985 PREDICTED: ER membrane protein complex s 0.977 0.973 0.688 0.0
297811273982 hypothetical protein ARALYDRAFT_487993 [ 0.997 0.996 0.689 0.0
449465135985 PREDICTED: ER membrane protein complex s 0.977 0.973 0.689 0.0
>gi|255551016|ref|XP_002516556.1| catalytic, putative [Ricinus communis] gi|223544376|gb|EEF45897.1| catalytic, putative [Ricinus communis] Back     alignment and taxonomy information
 Score = 1571 bits (4068), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 751/984 (76%), Positives = 859/984 (87%), Gaps = 4/984 (0%)

Query: 1   MAIRFIILTLLFLSSCTIPSLSLYEDQVGLMDWHQQYIGKVKHAVFHTQKTGRKRVVVST 60
           MAIR + L  L L S  IP+ SLYEDQVGLMDWHQ+YIGKVK AVFHTQKTGRKRV+VST
Sbjct: 1   MAIR-VFLFSLLLLSTAIPTFSLYEDQVGLMDWHQRYIGKVKDAVFHTQKTGRKRVIVST 59

Query: 61  EENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVW 120
           EENVIASLDLRHGEIFWRHV G ND +DGIDIA+GKYVITLSS+G  LRAWNLPDGQMVW
Sbjct: 60  EENVIASLDLRHGEIFWRHVFGTNDAIDGIDIAMGKYVITLSSEGGILRAWNLPDGQMVW 119

Query: 121 ESFLRGSKHSKPLLLVPTNLKVDKDSLILVSSKGCLHAVSSIDGEILWTRDFAAESVEVQ 180
           ESFL+G   SK LLLVP + KVDKD+ ILV  KGCL A+SSI GEI+W +DFAAES EVQ
Sbjct: 120 ESFLQGLNPSKSLLLVPASFKVDKDNTILVFGKGCLSAISSIHGEIIWKKDFAAESFEVQ 179

Query: 181 QVIQLDESDQIYVVGYAGSSQFHAYQINAMNGELLNHETAAFSGGFVGDVALVSSDTLVT 240
           QVIQ   SD IYVVG+ GSSQF AYQINA NGELL HE+AA SGGF G+V+LVS++TLV 
Sbjct: 180 QVIQPPSSDIIYVVGFVGSSQFDAYQINAKNGELLKHESAALSGGFSGEVSLVSTNTLVV 239

Query: 241 LDTTRSILVTVSFKNRKIAFQETHLSNLGEDSSGMVEILPSSLTGMFTVKINNYKLFIRL 300
           LD+T S L  VSF+N +I+FQ+T++S+L  D  GM  I+PS L G+F +K +++ +FIR+
Sbjct: 240 LDSTGSALTAVSFQNGEISFQKTYISDLIADPMGMAMIIPSKLIGVFALKTHSFMIFIRV 299

Query: 301 TSEDKLEVVHKVDHETVVSDALVFSEGKEAFAVVEHGGSKVDITVKPGQDWNNNLVQESI 360
           T E  LEV+ K+ H T VSD+L   E  +AFA+VEH G  + +TVK   +WN +L++ESI
Sbjct: 300 TDEGNLEVIDKIKHVTAVSDSLSLLEDWQAFAIVEHRGEDIYLTVKLSHNWNGDLLKESI 359

Query: 361 EMDHQRGLVHKVFINNYLRTDRSHGFRALIVMEDHSLLLVQQGKIVWNREDALASIIDVT 420
           +MDHQRG+VHKVFINNY+RTDR+HGFRALIVMEDHSLLL+QQG+IVW+RED LASIIDVT
Sbjct: 360 KMDHQRGIVHKVFINNYIRTDRTHGFRALIVMEDHSLLLLQQGEIVWSREDGLASIIDVT 419

Query: 421 TSELPVEKEGVSVAKVEHSLFEWLKGHMLKLKGTLMLASPEDVAAIQAIRLKSSEKSKMT 480
           TSELPVEKEGVSVAKVE +LFEWLKGH+LKLKGTLMLASPEDV AIQA+RLKSSEKSKMT
Sbjct: 420 TSELPVEKEGVSVAKVEQNLFEWLKGHILKLKGTLMLASPEDVVAIQAMRLKSSEKSKMT 479

Query: 481 RDHNGFRKLLIVLTKARKIFALHSGDGRVVWSLL---LHKSEACDSPTELNLYQWQTPHH 537
           RDHNGFRKLLI LTK+ K+FALH+GDGRVVWS+    L KS+AC++PT +N+YQWQ PHH
Sbjct: 480 RDHNGFRKLLIALTKSGKVFALHTGDGRVVWSVFMNSLRKSDACENPTGVNMYQWQVPHH 539

Query: 538 HAMDENPSVLVVGRCGVSSKAPAILSFVDTYTGKELNSFDLVHSAVQVMPLPFTDSTEQR 597
           HAMDENPSVLVVGRC  SS A  +LSF+DTYTGKEL+S  L HS VQV+PL FTDSTEQR
Sbjct: 540 HAMDENPSVLVVGRCRPSSDALGVLSFIDTYTGKELSSSSLAHSVVQVIPLTFTDSTEQR 599

Query: 598 LHLLVDDDRRIHLYPKTSEAISIFQQEFSNIYWYSVEADNGIIKGHAVKSKCAGEVLDDF 657
           LHLL+D D++ HLYPKT EA+ IFQ+EFSNI+WYSVEAD+GII+GHA+K  C GEV D++
Sbjct: 600 LHLLIDADQKAHLYPKTPEAVGIFQREFSNIFWYSVEADSGIIRGHALKGNCIGEVADEY 659

Query: 658 CFETRVLWSIIFPMESEKIIAAVSRKQNEVVHTQAKVTSEQDVMYKYISKNLLFVATVAP 717
           CFET+ +WSI+FP+ESEKII  V+RK NEVVHTQAKV ++QDVMYKYISKNLLFV TV P
Sbjct: 660 CFETKRIWSILFPLESEKIITTVTRKANEVVHTQAKVIADQDVMYKYISKNLLFVVTVTP 719

Query: 718 KASGHIGSADPDEAWLVVYLIDTITGRILHRMTHHGAQGPVHAVLSENWVVYHYFNLRAH 777
           KA G IG+A P+E+WLV YLIDT+TGRILHRMTHHGA GPVHAV SENWVVYHYFNLRAH
Sbjct: 720 KAIGGIGTATPEESWLVAYLIDTVTGRILHRMTHHGANGPVHAVFSENWVVYHYFNLRAH 779

Query: 778 RYEMSVTEIYDQSRAENKDVLKLVLGKHNLTAPVSSYSRPEITTKSQTYFFTHSVKAVAV 837
           RYEMSV EIYDQSRA+NKDV KL+LGKHNLT+P+SSYSRPE+ TKSQ+YFFTHSVKA+AV
Sbjct: 780 RYEMSVIEIYDQSRADNKDVWKLLLGKHNLTSPISSYSRPEVITKSQSYFFTHSVKAIAV 839

Query: 838 TSTAKGITSKQLLIGTIGDQVLALDKRFLDPRRSINPTQAEKEEGIIPLADSLPIIPQSY 897
           TST KGITSKQLL+GTIGDQVLALDKRFLDPRRSINPTQAEKEEGI+PL DSLPI+PQSY
Sbjct: 840 TSTTKGITSKQLLLGTIGDQVLALDKRFLDPRRSINPTQAEKEEGILPLTDSLPIMPQSY 899

Query: 898 VTHSLKVEGLRGILTVPAKLESTTLVFAYGVDLFYTRLAPSRTYDSLTEDFSYALLLLTI 957
           VTH+L+VEGLRGI+TVPAKLESTTLVFAYGVDLF+TR+APSRTYDSLTEDFSYALLLLTI
Sbjct: 900 VTHALQVEGLRGIITVPAKLESTTLVFAYGVDLFFTRIAPSRTYDSLTEDFSYALLLLTI 959

Query: 958 VALVAAIFVTWVLSEKKELREKWR 981
           VALV AIF TW+LSEKKELR+KWR
Sbjct: 960 VALVVAIFATWILSEKKELRDKWR 983

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225429981|ref|XP_002284012.1| PREDICTED: uncharacterized protein KIAA0090 homolog [Vitis vinifera] gi|296081867|emb|CBI20872.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224089040|ref|XP_002308610.1| predicted protein [Populus trichocarpa] gi|222854586|gb|EEE92133.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356515591|ref|XP_003526482.1| PREDICTED: uncharacterized protein KIAA0090 homolog [Glycine max] Back     alignment and taxonomy information
>gi|356507901|ref|XP_003522701.1| PREDICTED: uncharacterized protein KIAA0090 homolog [Glycine max] Back     alignment and taxonomy information
>gi|145357905|ref|NP_196717.3| PQQ_DH domain-containing protein [Arabidopsis thaliana] gi|332004312|gb|AED91695.1| PQQ_DH domain-containing protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|358344746|ref|XP_003636448.1| hypothetical protein MTR_041s0018 [Medicago truncatula] gi|355502383|gb|AES83586.1| hypothetical protein MTR_041s0018 [Medicago truncatula] Back     alignment and taxonomy information
>gi|449513201|ref|XP_004164260.1| PREDICTED: ER membrane protein complex subunit 1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|297811273|ref|XP_002873520.1| hypothetical protein ARALYDRAFT_487993 [Arabidopsis lyrata subsp. lyrata] gi|297319357|gb|EFH49779.1| hypothetical protein ARALYDRAFT_487993 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|449465135|ref|XP_004150284.1| PREDICTED: ER membrane protein complex subunit 1-like [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query981
TAIR|locus:2144266982 AT5G11560 "AT5G11560" [Arabido 0.997 0.996 0.679 0.0
ZFIN|ZDB-GENE-060810-98964 emc1 "ER membrane protein comp 0.802 0.816 0.271 2.9e-116
UNIPROTKB|F1NZP8983 EMC1 "ER membrane protein comp 0.432 0.431 0.280 8.7e-104
UNIPROTKB|Q5ZL00983 EMC1 "ER membrane protein comp 0.432 0.431 0.280 8.7e-104
RGD|1310427993 Emc1 "ER membrane protein comp 0.244 0.241 0.370 1.2e-101
MGI|MGI:2443696997 Emc1 "ER membrane protein comp 0.244 0.240 0.370 3.3e-101
UNIPROTKB|F1PN78996 EMC1 "Uncharacterized protein" 0.244 0.240 0.370 6.7e-101
UNIPROTKB|E1BBT8999 EMC1 "Uncharacterized protein" 0.432 0.424 0.277 5.8e-93
UNIPROTKB|F1SUQ3893 EMC1 "Uncharacterized protein" 0.201 0.221 0.35 6.7e-75
UNIPROTKB|I3LHU9896 EMC1 "Uncharacterized protein" 0.201 0.220 0.35 8.8e-75
TAIR|locus:2144266 AT5G11560 "AT5G11560" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 3563 (1259.3 bits), Expect = 0., P = 0.
 Identities = 669/984 (67%), Positives = 815/984 (82%)

Query:     1 MAIRFIILTLLFLSSCTIPSLSLYEDQVGLMDWHQQYIGKVKHAVFHTQKTGRKRVVVST 60
             MAIR  +  LLFLSS  + S SLYEDQ GL DWHQ+YIGKVKHAVFHTQKTGRKRV+VST
Sbjct:     1 MAIRVFLTLLLFLSSAIL-SFSLYEDQAGLTDWHQRYIGKVKHAVFHTQKTGRKRVIVST 59

Query:    61 EENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVW 120
             EENV+ASLDLRHGEIFWRHVLG  D +DG+ IALGKYVITLSS+GSTLRAWNLPDGQMVW
Sbjct:    60 EENVVASLDLRHGEIFWRHVLGTKDAIDGVGIALGKYVITLSSEGSTLRAWNLPDGQMVW 119

Query:   121 ESFLRGSKHSKPLLLVPTNLKVDKDSLILVSSKGCLHAVSSIDGEILWTRDFAAESVEVQ 180
             E+ L  ++HSK LL VP NLKVDKD  I V   G LHAVS+IDGE+LW +DF AE  EVQ
Sbjct:   120 ETSLHTAQHSKSLLSVPINLKVDKDYPITVFGGGYLHAVSAIDGEVLWKKDFTAEGFEVQ 179

Query:   181 QVIQLDESDQIYVVGYAGSSQFHAYQINAMNGELLNHETAAFSGGFVGDVALVSSDTLVT 240
             +V+Q   S  IYV+G+  SS+   YQI++ +GE++  ++  F GGF G+++ VSSD +V 
Sbjct:   180 RVLQAPGSSIIYVLGFLHSSEAVVYQIDSKSGEVVAQKSTVFPGGFSGEISSVSSDKVVV 239

Query:   241 LDTTRSILVTVSFKNRKIAFQETHLSNLGEDSSGMVEILPSSLTGMFTVKINNYKLFIRL 300
             LD+TRSILVT+ F +  I+FQ+T +S+L EDS G  EIL   L+ M  VK+N   +F+ +
Sbjct:   240 LDSTRSILVTIGFIDGDISFQKTPISDLVEDS-GTAEILSPLLSNMLAVKVNKRTIFVNV 298

Query:   301 TSEDKLEVVHKVDHETVVSDALVFSEGKEAFAVVEHGGSKVDITVKPGQDWNNNLVQESI 360
               + KLEVV  +  ET +SD+L  ++ +EAFA V H GS++ + VK   D NN L++E+I
Sbjct:   299 GDKGKLEVVDSLSDETAMSDSLPVADDQEAFASVHHEGSRIHLMVKLVNDLNNVLLRETI 358

Query:   361 EMDHQRGLVHKVFINNYLRTDRSHGFRALIVMEDHSLLLVQQGKIVWNREDALASIIDVT 420
             +MD  RG VHKVF+NNY+RTDRS+GFRALIVMEDHSLLL+QQG IVW+RE+ LAS+ DVT
Sbjct:   359 QMDQNRGRVHKVFMNNYIRTDRSNGFRALIVMEDHSLLLLQQGAIVWSREEGLASVTDVT 418

Query:   421 TSELPVEKEGVSVAKVEHSLFEWLKGHMLKLKGTLMLASPEDVAAIQAIRLKSSEKSKMT 480
             T+ELP+EK+GVSVAKVEH+LFEWLKGH+LKLKG+L+LASPEDV AIQ +R+KSS K+K+T
Sbjct:   419 TAELPLEKDGVSVAKVEHTLFEWLKGHVLKLKGSLLLASPEDVVAIQDLRVKSSGKNKLT 478

Query:   481 RDHNGFRKLLIVLTKARKIFALHSGDGRVVWSLLLH---KSEACDSPTELNLYQWQTPHH 537
             RDHNGFRKL++ LT+A K+FALH+GDGR+VWS+LL+   +S++C+ P  ++LYQWQ PHH
Sbjct:   479 RDHNGFRKLILALTRAGKLFALHTGDGRIVWSMLLNSPSQSQSCERPNGVSLYQWQVPHH 538

Query:   538 HAMDENPSVLVVGRCGVSSKAPAILSFVDTYTGKELNSFDLVHSAVQVMPLPFTDSTEQR 597
             HAMDENPSVLVVG+CG  S AP +LSFVD YTGKE++S D+ HS VQVMPLP TDS EQR
Sbjct:   539 HAMDENPSVLVVGKCGSDSSAPGVLSFVDVYTGKEISSSDIGHSVVQVMPLPITDSKEQR 598

Query:   598 LHLLVDDDRRIHLYPKTSEAISIFQQEFSNIYWYSVEADNGIIKGHAVKSKCAGEVLDDF 657
             LHL+ D    +HLYPKTSEA+SIFQ+EF N+YWY+VEAD+GII+GH +K  C+GE  D++
Sbjct:   599 LHLIADTVGHVHLYPKTSEALSIFQREFQNVYWYTVEADDGIIRGHVMKGSCSGETADEY 658

Query:   658 CFETRVLWSIIFPMESEKIIAAVSRKQNEVVHTQAKVTSEQDVMYKYISKNLLFVATVAP 717
             CF TR LW+++FP ESEKII+ ++RK NEVVHTQAKV ++QD++YKY+S+NLLFVATV+P
Sbjct:   659 CFTTRELWTVVFPSESEKIISTLTRKPNEVVHTQAKVNTDQDLLYKYVSRNLLFVATVSP 718

Query:   718 KASGHIGSADPDEAWLVVYLIDTITGRILHRMTHHGAQGPVHAVLSENWVVYHYFNLRAH 777
             K +G IGS  P+E+ LVVYLIDTITGRILHR++H G QGPVHAV SENWVVYHYFNLRAH
Sbjct:   719 KGAGEIGSVTPEESSLVVYLIDTITGRILHRLSHQGCQGPVHAVFSENWVVYHYFNLRAH 778

Query:   778 RYEMSVTEIYDQSRAENKDVLKLVLGKHNLTAPVSSYSRPEITTKSQTYFFTHSVKAVAV 837
             +YE++V EIYDQSRAENK+V KL+LGKHNLTAP++SYSRPE+ TKSQ+YFF  SVK +AV
Sbjct:   779 KYEVTVVEIYDQSRAENKNVWKLILGKHNLTAPITSYSRPEVFTKSQSYFFAQSVKTIAV 838

Query:   838 TSTAKGITSKQLLIGTIGDQVLALDKRFLDPRRSINPTQAEKEEGIIPLADSLPIIPQSY 897
             TSTAKGITSKQLLIGTIGDQ+LALDKRF+DPRR++NP+QAEKEEGIIPL D+LPIIPQ+Y
Sbjct:   839 TSTAKGITSKQLLIGTIGDQILALDKRFVDPRRTLNPSQAEKEEGIIPLTDTLPIIPQAY 898

Query:   898 VTHSLKVEGLRGILTVPAKLESTTLVFAYGVDLFYTRLAPSRTYDSLTEDFSYXXXXXXX 957
             VTHS KVEGLRGI+T P+KLESTT VFAYGVDLFYTRLAPS+TYDSLT+DFSY       
Sbjct:   899 VTHSHKVEGLRGIVTAPSKLESTTHVFAYGVDLFYTRLAPSKTYDSLTDDFSYALLLITI 958

Query:   958 XXXXXXXFVTWVLSEKKELREKWR 981
                    ++TWVLSEKKEL EKWR
Sbjct:   959 VALVAAIYITWVLSEKKELSEKWR 982
GO:0003824 "catalytic activity" evidence=ISS
GO:0009507 "chloroplast" evidence=ISM
GO:0005773 "vacuole" evidence=IDA
GO:0005783 "endoplasmic reticulum" evidence=IDA
GO:0005774 "vacuolar membrane" evidence=IDA
GO:0005886 "plasma membrane" evidence=IDA
GO:0005794 "Golgi apparatus" evidence=IDA
GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=RCA
ZFIN|ZDB-GENE-060810-98 emc1 "ER membrane protein complex subunit 1" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1NZP8 EMC1 "ER membrane protein complex subunit 1" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q5ZL00 EMC1 "ER membrane protein complex subunit 1" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
RGD|1310427 Emc1 "ER membrane protein complex subunit 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:2443696 Emc1 "ER membrane protein complex subunit 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F1PN78 EMC1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|E1BBT8 EMC1 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1SUQ3 EMC1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|I3LHU9 EMC1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query981
pfam07774217 pfam07774, DUF1620, Protein of unknown function (D 2e-63
pfam13360234 pfam13360, PQQ_2, PQQ-like domain 9e-08
pfam13360234 pfam13360, PQQ_2, PQQ-like domain 1e-06
COG1520370 COG1520, COG1520, FOG: WD40-like repeat [Function 1e-06
TIGR03300377 TIGR03300, assembly_YfgL, outer membrane assembly 7e-06
TIGR03300377 TIGR03300, assembly_YfgL, outer membrane assembly 7e-05
COG1520370 COG1520, COG1520, FOG: WD40-like repeat [Function 2e-04
cd00216434 cd00216, PQQ_DH_like, PQQ-dependent dehydrogenases 0.001
cd10276358 cd10276, BamB_YfgL, Beta-barrel assembly machinery 0.001
pfam13360234 pfam13360, PQQ_2, PQQ-like domain 0.004
>gnl|CDD|219566 pfam07774, DUF1620, Protein of unknown function (DUF1620) Back     alignment and domain information 
 Score =  213 bits (545), Expect = 2e-63
 Identities = 93/221 (42%), Positives = 134/221 (60%), Gaps = 8/221 (3%)

Query: 763 SENWVVYHYFNLRAHRYEMSVTEIYDQSRAENKDVLKLVLGKHNLTAPVSSYSRPEITTK 822
           SENWVVY YFN    RYE+ V E+Y+  +  ++  L                + P     
Sbjct: 2   SENWVVYSYFNDPIKRYEIVVVELYESKKPNDRGSLGSSFSSKK-----PFDNPPPPHVI 56

Query: 823 SQTYFFTHSVKAVAVTSTAKGITSKQLLIGTIGDQVLALDKRFLDPRRSIN--PTQAEKE 880
           SQ+Y F   +KA++VT T +GITSK LL+G    Q+ ++ +R LDPRR +   PT AE+E
Sbjct: 57  SQSYIFPEPIKALSVTKTKQGITSKSLLLGLASGQIASIPRRLLDPRRPVGRDPTAAEQE 116

Query: 881 EG-IIPLADSLPIIPQSYVTHSLKVEGLRGILTVPAKLESTTLVFAYGVDLFYTRLAPSR 939
           EG +IP    +PI P S ++H  KV G++ I+T P  LEST+LV AYG+DLF TR+ PS+
Sbjct: 117 EGLLIPYDPVIPIDPNSVISHKRKVAGIKKIITSPTNLESTSLVLAYGLDLFCTRITPSK 176

Query: 940 TYDSLTEDFSYALLLLTIVALVAAIFVTWVLSEKKELREKW 980
           ++D L +DF+  LLL TI+AL   + ++     +K+L +KW
Sbjct: 177 SFDLLGKDFNKILLLTTILALFVGVVISKPFVSRKQLNQKW 217

These sequences are mainly derived from predicted eukaryotic proteins. The region in question lies towards the C-terminus of these large proteins and is approximately 300 amino acid residues long. Length = 217
>gnl|CDD|222072 pfam13360, PQQ_2, PQQ-like domain Back     alignment and domain information
>gnl|CDD|222072 pfam13360, PQQ_2, PQQ-like domain Back     alignment and domain information
>gnl|CDD|224437 COG1520, COG1520, FOG: WD40-like repeat [Function unknown] Back     alignment and domain information
>gnl|CDD|234163 TIGR03300, assembly_YfgL, outer membrane assembly lipoprotein YfgL Back     alignment and domain information
>gnl|CDD|234163 TIGR03300, assembly_YfgL, outer membrane assembly lipoprotein YfgL Back     alignment and domain information
>gnl|CDD|224437 COG1520, COG1520, FOG: WD40-like repeat [Function unknown] Back     alignment and domain information
>gnl|CDD|199833 cd00216, PQQ_DH_like, PQQ-dependent dehydrogenases and related proteins Back     alignment and domain information
>gnl|CDD|199834 cd10276, BamB_YfgL, Beta-barrel assembly machinery (Bam) complex component B and related proteins Back     alignment and domain information
>gnl|CDD|222072 pfam13360, PQQ_2, PQQ-like domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 981
KOG2103910 consensus Uncharacterized conserved protein [Funct 100.0
PF07774217 DUF1620: Protein of unknown function (DUF1620); In 100.0
PRK11138394 outer membrane biogenesis protein BamB; Provisiona 99.87
TIGR03300377 assembly_YfgL outer membrane assembly lipoprotein 99.83
PRK11138394 outer membrane biogenesis protein BamB; Provisiona 99.76
PF13360238 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 99.73
TIGR03300377 assembly_YfgL outer membrane assembly lipoprotein 99.69
cd00216488 PQQ_DH Dehydrogenases with pyrrolo-quinoline quino 99.62
cd00216488 PQQ_DH Dehydrogenases with pyrrolo-quinoline quino 99.62
PF13360238 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 99.58
TIGR03075527 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan 99.48
TIGR03074764 PQQ_membr_DH membrane-bound PQQ-dependent dehydrog 99.48
COG1520370 FOG: WD40-like repeat [Function unknown] 99.47
COG1520370 FOG: WD40-like repeat [Function unknown] 99.31
TIGR03074764 PQQ_membr_DH membrane-bound PQQ-dependent dehydrog 99.29
TIGR03075527 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan 99.26
KOG4649354 consensus PQQ (pyrrolo-quinoline quinone) repeat p 98.95
KOG4649354 consensus PQQ (pyrrolo-quinoline quinone) repeat p 98.73
COG4993773 Gcd Glucose dehydrogenase [Carbohydrate transport 98.67
COG4993773 Gcd Glucose dehydrogenase [Carbohydrate transport 97.97
TIGR03866300 PQQ_ABC_repeats PQQ-dependent catabolism-associate 97.7
PF0101138 PQQ: PQQ enzyme repeat family.; InterPro: IPR00237 97.43
PF02239369 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO 97.39
TIGR02658352 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. 97.31
cd00200289 WD40 WD40 domain, found in a number of eukaryotic 97.28
TIGR03866300 PQQ_ABC_repeats PQQ-dependent catabolism-associate 97.28
PF02239369 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO 97.19
TIGR02658352 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. 97.11
PF05096264 Glu_cyclase_2: Glutamine cyclotransferase; InterPr 97.06
cd00200289 WD40 WD40 domain, found in a number of eukaryotic 96.97
PF1357040 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A. 96.73
PF1357040 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A. 96.69
PF0101138 PQQ: PQQ enzyme repeat family.; InterPro: IPR00237 96.68
smart0056433 PQQ beta-propeller repeat. Beta-propeller repeat o 96.66
PTZ00421493 coronin; Provisional 96.65
PF10282345 Lactonase: Lactonase, 7-bladed beta-propeller; Int 96.28
KOG2103910 consensus Uncharacterized conserved protein [Funct 96.08
smart0056433 PQQ beta-propeller repeat. Beta-propeller repeat o 95.75
KOG1539910 consensus WD repeat protein [General function pred 95.72
KOG0296399 consensus Angio-associated migratory cell protein 95.67
PF10282345 Lactonase: Lactonase, 7-bladed beta-propeller; Int 95.63
PTZ00420568 coronin; Provisional 95.62
PF05935477 Arylsulfotrans: Arylsulfotransferase (ASST); Inter 95.51
PHA02713557 hypothetical protein; Provisional 94.71
PTZ00421493 coronin; Provisional 94.69
KOG2048691 consensus WD40 repeat protein [General function pr 94.65
KOG0316307 consensus Conserved WD40 repeat-containing protein 94.54
KOG2048691 consensus WD40 repeat protein [General function pr 94.4
KOG0278334 consensus Serine/threonine kinase receptor-associa 93.86
KOG1539910 consensus WD repeat protein [General function pred 93.33
PLN029191057 haloacid dehalogenase-like hydrolase family protei 93.32
PHA03098534 kelch-like protein; Provisional 93.14
PF05096264 Glu_cyclase_2: Glutamine cyclotransferase; InterPr 93.03
PHA02790480 Kelch-like protein; Provisional 93.01
PF05935477 Arylsulfotrans: Arylsulfotransferase (ASST); Inter 92.87
KOG0318603 consensus WD40 repeat stress protein/actin interac 92.85
COG3823262 Glutamine cyclotransferase [Posttranslational modi 92.77
PF14269299 Arylsulfotran_2: Arylsulfotransferase (ASST) 92.67
PF06433342 Me-amine-dh_H: Methylamine dehydrogenase heavy cha 92.61
PRK11028330 6-phosphogluconolactonase; Provisional 92.33
KOG0291893 consensus WD40-repeat-containing subunit of the 18 92.17
TIGR03548323 mutarot_permut cyclically-permuted mutatrotase fam 92.04
KOG2055514 consensus WD40 repeat protein [General function pr 92.01
COG4257353 Vgb Streptogramin lyase [Defense mechanisms] 91.86
KOG3881412 consensus Uncharacterized conserved protein [Funct 91.49
PLN00181793 protein SPA1-RELATED; Provisional 91.49
PLN00181793 protein SPA1-RELATED; Provisional 91.34
TIGR03548323 mutarot_permut cyclically-permuted mutatrotase fam 91.24
KOG0296399 consensus Angio-associated migratory cell protein 91.23
KOG0291893 consensus WD40-repeat-containing subunit of the 18 91.19
PHA02713557 hypothetical protein; Provisional 91.0
KOG0274537 consensus Cdc4 and related F-box and WD-40 protein 90.34
KOG0310487 consensus Conserved WD40 repeat-containing protein 90.15
PRK11028330 6-phosphogluconolactonase; Provisional 89.88
KOG0266456 consensus WD40 repeat-containing protein [General 89.72
PTZ00420568 coronin; Provisional 89.69
KOG0275508 consensus Conserved WD40 repeat-containing protein 89.66
PRK14131376 N-acetylneuraminic acid mutarotase; Provisional 89.37
KOG0310487 consensus Conserved WD40 repeat-containing protein 88.65
TIGR03547346 muta_rot_YjhT mutatrotase, YjhT family. Members of 88.39
PLN029191057 haloacid dehalogenase-like hydrolase family protei 88.37
PHA02790480 Kelch-like protein; Provisional 87.76
PF08450246 SGL: SMP-30/Gluconolaconase/LRE-like region; Inter 87.62
PF08450246 SGL: SMP-30/Gluconolaconase/LRE-like region; Inter 87.47
KOG1446311 consensus Histone H3 (Lys4) methyltransferase comp 87.47
KOG0278334 consensus Serine/threonine kinase receptor-associa 87.41
KOG1274933 consensus WD40 repeat protein [General function pr 86.04
KOG0319775 consensus WD40-repeat-containing subunit of the 18 85.98
PRK05137435 tolB translocation protein TolB; Provisional 85.91
KOG0316307 consensus Conserved WD40 repeat-containing protein 85.86
TIGR03547346 muta_rot_YjhT mutatrotase, YjhT family. Members of 85.71
PF14269299 Arylsulfotran_2: Arylsulfotransferase (ASST) 85.58
KOG0266456 consensus WD40 repeat-containing protein [General 84.8
PRK03629429 tolB translocation protein TolB; Provisional 84.36
PRK04922433 tolB translocation protein TolB; Provisional 84.35
KOG0649325 consensus WD40 repeat protein [General function pr 84.3
KOG14451012 consensus Tumor-specific antigen (contains WD repe 83.44
PRK04792448 tolB translocation protein TolB; Provisional 82.95
KOG0270463 consensus WD40 repeat-containing protein [Function 81.8
KOG4547541 consensus WD40 repeat-containing protein [General 80.23
>KOG2103 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information 
Probab=100.00  E-value=6.1e-169  Score=1443.23  Aligned_cols=877  Identities=37%  Similarity=0.535  Sum_probs=716.7

Q ss_pred             ccccccccccccEeEEEeccCceeeeeeeecccCCCEEEEEcCCCEEEEEECCCCccceEEEcCCCcceeeeeeeecCeE
Q 002016           19 PSLSLYEDQVGLMDWHQQYIGKVKHAVFHTQKTGRKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYV   98 (981)
Q Consensus        19 ~~~AlyedqvG~~dW~~~~vG~~~~~~f~~~~~~~~~VyvaT~~g~L~ALd~~tG~ivWR~~l~~~~~i~~l~~~~~~~v   98 (981)
                      +|+|+||||+||+|||++++| ++...|+.-.+..+++||+|++|+|++||++||+++|||.++.+....+..  ..   
T Consensus        14 ~~aav~edq~gkfdwr~~~vG-~~k~~~~~~~t~~~rlivsT~~~vlAsL~~~tGei~WRqvl~~~~~~~~~~--~~---   87 (910)
T KOG2103|consen   14 RAAAVYEDQAGKFDWRQQLVG-VKKVNFLVYDTKSKRLIVSTEKGVLASLNLRTGEIIWRQVLEPKTSGLGVP--LT---   87 (910)
T ss_pred             HHHHHHHHHhhhcchhhhccc-ceeEEEEeecCCCceEEEEeccchhheecccCCcEEEEEeccCCCcccCcc--ee---
Confidence            455999999999999999999 554556666677899999999999999999999999999998874332221  11   


Q ss_pred             EEEEccCCEEEEEeCCCCcEeEEEeccCccccCCceeecccccccCCcEEEEEeCCEEEEEECCCCcEeEEEeccCccee
Q 002016           99 ITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILVSSKGCLHAVSSIDGEILWTRDFAAESVE  178 (981)
Q Consensus        99 V~Vs~~g~~V~A~da~tG~llWe~~~~~~~~s~~~~~v~~~~~~~~~~~V~V~~~g~l~aLd~~tG~~~W~~~~~~~~~~  178 (981)
                      -++|.+|..+|+||.++|.+.|+..+..+ . +...+.      ...+ +.++ +|    .....|+.+|.+.......+
T Consensus        88 ~~iS~dg~~lr~wn~~~g~l~~~i~l~~g-~-~~~~~~------v~~~-i~v~-~g----~~~~~g~l~w~~~~~~~~~~  153 (910)
T KOG2103|consen   88 NTISVDGRYLRSWNTNNGILDWEIELADG-F-KGLLLE------VNKG-IAVL-NG----HTRKFGELKWVESFSISIEE  153 (910)
T ss_pred             EEEccCCcEEEeecCCCceeeeecccccc-c-ceeEEE------Eccc-eEEE-cc----eeccccceeehhhccccchh
Confidence            15788889999999999999999999876 3 222222      1112 2232 23    67789999999988765554


Q ss_pred             eeEEEEeecCCeEEEEEecCCceeEEEEEECCCCcee-eeeeeeccCCccCceEEEcCcEEEEEECCCCeEEEEEeecCe
Q 002016          179 VQQVIQLDESDQIYVVGYAGSSQFHAYQINAMNGELL-NHETAAFSGGFVGDVALVSSDTLVTLDTTRSILVTVSFKNRK  257 (981)
Q Consensus       179 ~~~vv~s~~~~~Vyvvg~~g~~~~~v~aLd~~tG~~l-w~~~v~~p~~~~~~~~~vg~~~lv~~d~~~g~L~v~~L~sg~  257 (981)
                      ..|+..+...+.+|++++--.++..+++++..+|... |+.++..|+.-...|..+.+-+++|.+   |.+...|+..++
T Consensus       154 ~~q~~~~~~t~vvy~~~~l~~s~~~V~~~~~~~g~v~~~~~~v~~pw~~~~~c~~~k~~vl~~s~---g~l~s~di~~~~  230 (910)
T KOG2103|consen  154 DLQDAKIYGTDVVYVLGLLKRSGSCVQQVFSDDGEVTGPQSTVLGPWFKVLSCSTDKEVVLVCSN---GTLISLDISSQK  230 (910)
T ss_pred             HHHHhhhccCcEEEEEEEEecCCceEEEEEccCCcEecceeeeecCcccccccccccceEEEcCC---CCeEEEEEEeec
Confidence            4554445678899999887656668999999999999 888888886544456555566788875   578888887655


Q ss_pred             eeEEEEeecccCCCCCCceEEeecCCcc-ceEEEecCcEEEEEEecCCcEEEEEeecCcceeeeeeeecCCceeEEEEEE
Q 002016          258 IAFQETHLSNLGEDSSGMVEILPSSLTG-MFTVKINNYKLFIRLTSEDKLEVVHKVDHETVVSDALVFSEGKEAFAVVEH  336 (981)
Q Consensus       258 ~~~~~~~l~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~  336 (981)
                      ....+...           +++-. ..| ...+..++|..++.+++.|..+++......-..+.+++..++..++.++.+
T Consensus       231 ~~~~q~~~-----------e~l~~-l~g~~i~~~g~~~~~~V~V~s~~~~~v~~~~~~e~~lsdsl~~~~d~e~~~si~~  298 (910)
T KOG2103|consen  231 VQISQLLA-----------EILLP-LTGDLILLDGNKHTAMVSVNSSSNHWVYLFCRSEVDLSDSLEAGGDTEASKSIHP  298 (910)
T ss_pred             cchhhhhh-----------hhhhc-cCCceEEecCCCceeEEEEecCCCeEEEeecccceeeccccccccccccceeeec
Confidence            21111111           11110 112 334444557789999877777775543222344555555666677766555


Q ss_pred             cCceEEEEEeeeeeeccCccceeeeeccCCCceeEEEEEEEeecCCcceeEEEEEEcCCcEEEEECCeEe-EEeeccccc
Q 002016          337 GGSKVDITVKPGQDWNNNLVQESIEMDHQRGLVHKVFINNYLRTDRSHGFRALIVMEDHSLLLVQQGKIV-WNREDALAS  415 (981)
Q Consensus       337 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~l~~~~d~~~~l~~~g~~~-W~ReEsLa~  415 (981)
                      .++...-.++-++..-....+....++...+.|+++..  |..++++.+||++++++|+.+.++|||.+. |+|||+||+
T Consensus       299 ~ss~~~~~V~~vn~l~~~~~~~~~~~~~~l~~p~~F~~--~~~~~~e~~~~al~~~~d~~~~~~qng~i~~WsREEsLa~  376 (910)
T KOG2103|consen  299 ESSYLFDQVFIVNNLYLVLDAQSILLEQKLSRPEVFGT--FEYFDREIGALALVVNDDHSLLFLQNGLILVWSREESLAN  376 (910)
T ss_pred             ccchhhheeeehhhhhhcchhhhhhhhcccCcchhcce--eEEeccccceEEEEEecCceEEEEeCcceEEeehhhhhhh
Confidence            55432211222221111112223334444556644333  444555669999999999999999998876 999999999


Q ss_pred             ceeEEEEeCCCCcccchhhhhhhhhh----hhHHHHHH-hhhcccccCChhhHHHHHh-------cc-ccccCccc-ccc
Q 002016          416 IIDVTTSELPVEKEGVSVAKVEHSLF----EWLKGHML-KLKGTLMLASPEDVAAIQA-------IR-LKSSEKSK-MTR  481 (981)
Q Consensus       416 i~~~~~~dlp~~~~~~~~~~le~e~~----~~~~~~~~-Rl~~~~~~~~~~~~~~l~~-------~~-~~~~~~~~-~~r  481 (981)
                      +++++|+|||++++   ++.+|.|+.    +++.+||+ |+.+        |+.+|++       .+ ++++.+++ +.|
T Consensus       377 vvd~~~vdlpLs~~---~~~~e~e~~~~~~~~l~~afl~R~~t--------q~~ql~~~~~h~~~~~~~~s~~~n~~l~r  445 (910)
T KOG2103|consen  377 VVDVEMVDLPLSRD---QGLLEDEFEDKESNSLWGAFLKRLTT--------QFNQLINLLKHNQGLPTPLSALKNKDLSR  445 (910)
T ss_pred             hccceeeccccccc---hhhHHHHhhccccchHHHHHHHHHHH--------HHHHHHHHHHhhhccCCCcccccccceee
Confidence            99999999999998   667777763    37999999 9999        7777665       22 44555666 999


Q ss_pred             cCCCceeEEEEEeCCceEEEEECCCCcEEEEEecCCCC-CCCCccccceeecccCccccCCCCCeEEEEEecCCCCCCCc
Q 002016          482 DHNGFRKLLIVLTKARKIFALHSGDGRVVWSLLLHKSE-ACDSPTELNLYQWQTPHHHAMDENPSVLVVGRCGVSSKAPA  560 (981)
Q Consensus       482 D~fGf~K~iv~~T~~Gkl~alds~~G~i~W~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~~~~  560 (981)
                      |.||||||||++|+.|||||||+.+|+++|++.+++.. +++.+  .+++|+..+||+   .++.+.|++.++  -++++
T Consensus       446 D~Fgl~K~iIvlT~tGkiFglds~~G~i~Wkl~L~~~~~~~e~v--~l~vqr~~~H~~---~d~~~svlf~~k--~s~~g  518 (910)
T KOG2103|consen  446 DKFGLRKMIIVLTSTGKIFGLDSVDGQIHWKLWLPNVQQNPEGV--KLFVQRTTAHFP---LDEDPSVLFVHK--GSGNG  518 (910)
T ss_pred             cccCceeEEEEEecCceEEEEEcCCCeEEEEEecCcccCCcccc--eEEEEeccccCC---CCCCCeEEEEec--cCCCe
Confidence            99999999999999999999999999999999998654 33444  677888888987   666777776654  46889


Q ss_pred             EEEEEEccCCceecccccccceeEEeeecccCCccceEEEEEcCCCceEEccCChhhhhhhhccccceEEEEEEccCCeE
Q 002016          561 ILSFVDTYTGKELNSFDLVHSAVQVMPLPFTDSTEQRLHLLVDDDRRIHLYPKTSEAISIFQQEFSNIYWYSVEADNGII  640 (981)
Q Consensus       561 ~~~~~~~~tG~~~~~~~l~~~~~~~~~lp~~~~~~~~~~~~~d~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~i  640 (981)
                      +++.|||++|++++...++++++|.++||.++.++.+.++++|+.+.+++||.+.+....++++++++|+|++|.++|.|
T Consensus       519 vly~fn~~~Gkv~s~~~l~~~v~q~sllp~~~~d~~~~illidd~~~v~l~P~~~~~l~~~~~~a~s~y~Yt~e~~~~~i  598 (910)
T KOG2103|consen  519 VLYEFNPITGKVISRSPLDYRVKQLSLLPVTEHDHQYLILLIDDHLKVKLYPGTSTDLEIVANEASSIYLYTVEADTGGI  598 (910)
T ss_pred             EEEEEecCcceeeecCccCCceeeEEeccccccccceeEEEecccceEEecCCCcccchhhhhccCccEEEEEEcccCcE
Confidence            99999999999998888999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEeecCCCccccccceeeeEeEEEEccCCcceEEEEeecCCCCceecceEecCCCceEecccCCceEEEEEecCCCC
Q 002016          641 KGHAVKSKCAGEVLDDFCFETRVLWSIIFPMESEKIIAAVSRKQNEVVHTQAKVTSEQDVMYKYISKNLLFVATVAPKAS  720 (981)
Q Consensus       641 ~G~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~e~Iv~~~~~~~~e~v~S~g~vlgdrsVlYKYLNPNl~~v~t~~~~~~  720 (981)
                      +||.++.+          ++..++|+.++|++.|+||++..|+++|+|||+|||||||+||||||||||+||+|.+++  
T Consensus       599 ~Gy~i~~~----------lT~~~~W~~~l~~e~e~IIav~~r~p~e~VhSqGrVlgdrsVlYKYlnPNL~A~~t~~~~--  666 (910)
T KOG2103|consen  599 YGYIIKAD----------LTTTQTWKKNLPSEKEKIIAVKGRNPNEHVHSQGRVLGDRSVLYKYLNPNLAAVATANPD--  666 (910)
T ss_pred             EEEEEecc----------cceeeeeeeccCchhheeeEeccCCcchheeecceecccceeeeeccCcchhheeecCcC--
Confidence            99999844          578899999999878999999999999999999999999999999999999999999983  


Q ss_pred             CCcCCCCCCCcEEEEEEEEceeceEEEEEeecCCCCCeeEEEecCeEEEEEecccceeeEEEEEEeccCCccCchhhhhh
Q 002016          721 GHIGSADPDEAWLVVYLIDTITGRILHRMTHHGAQGPVHAVLSENWVVYHYFNLRAHRYEMSVTEIYDQSRAENKDVLKL  800 (981)
Q Consensus       721 ~~~~~~~~~~~~l~v~liD~VtG~il~s~~h~~~~~pi~~v~~ENWivYsy~~~~~~~~ei~v~ELyE~~~~~~~~~~~~  800 (981)
                           .+++   ..+||||+|||+|+|+++|+++.+|||+||||||+||||||++.+|+|++|+||||+..+++|.    
T Consensus       667 -----~~~~---~~~~LiD~VTG~Ivht~~h~k~~~PvhiVfSENWvvYsYfs~k~~rteltvvELYEgs~~~nk~----  734 (910)
T KOG2103|consen  667 -----DHHE---TFLYLIDTVTGSIVHTQSHQKARGPVHIVFSENWVVYSYFSDKARRTELTVVELYEGSEQDNKL----  734 (910)
T ss_pred             -----Ccee---EEEEEEeeeeeEEEEeeehhhhcCceEEEEecceEEEEEeccccccceEEEEEEecCCcccccc----
Confidence                 2222   1569999999999999999999999999999999999999999999999999999999776641    


Q ss_pred             hcccccCcccccCCCCCc-e-eEEEEEeecccccceEEeeeecCccccccEEEEecCCcEEEeeccccCCCCCCCCCccc
Q 002016          801 VLGKHNLTAPVSSYSRPE-I-TTKSQTYFFTHSVKAVAVTSTAKGITSKQLLIGTIGDQVLALDKRFLDPRRSINPTQAE  878 (981)
Q Consensus       801 ~~~~~~~t~~~Ss~~~~~-~-~v~~qsyi~p~~I~~m~vT~T~~GIT~K~iL~~l~sgqI~~ipk~~LdpRRp~~pt~~~  878 (981)
                            +.. |+|++.|+ | +|.+||||||+.|++|++|.|++|||+|+||+||+||||++|||+|||||||..||+++
T Consensus       735 ------s~~-~~sl~ap~lp~~v~tqsYIfp~~I~tm~vT~Te~GITsk~iLigl~sgqI~~ipk~LLdprRp~~pte~~  807 (910)
T KOG2103|consen  735 ------SNV-FDSLSAPPLPGQVQTQSYIFPQIIKTMSVTITEQGITSKHILIGLPSGQILEIPKALLDPRRPPAPTEKK  807 (910)
T ss_pred             ------ccc-hhcccCCCCCchhheeeeechhheeeeeeeecccCcchhheEEecCCCCcccchHHhhCCCCCCCcchhh
Confidence                  233 88887654 5 89999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccCCcCCcccCCCCCccceEEeEEeccccCeEeccCCCcceeEEEEEcCeEEEEEecCCCccccCCCCCChhhHHHHHH
Q 002016          879 KEEGIIPLADSLPIIPQSYVTHSLKVEGLRGILTVPAKLESTTLVFAYGVDLFYTRLAPSRTYDSLTEDFSYALLLLTIV  958 (981)
Q Consensus       879 ~Eegl~pY~p~lp~~~~~~ith~~~v~~~~~I~t~Pt~LESTslV~a~G~DiF~Trv~PS~~FDiL~~~Fnk~~L~~ti~  958 (981)
                      +|||+|||+|+||++++.+|||||+|.++|+|+|+||+|||||||||||+|+||||++||++||+|++||||.+|++|++
T Consensus       808 rEe~~IPY~P~ipi~~e~~InynqtV~~~rgI~TaPS~LESTtlV~ayGlDlF~TR~aPSktfD~LkddFdy~ll~itlf  887 (910)
T KOG2103|consen  808 REEMAIPYTPEIPINDEFIINYNQTVLRVRGIYTAPSGLESTTLVLAYGLDLFFTRLAPSKTFDLLKDDFDYVLLSITLF  887 (910)
T ss_pred             hhccCCCCCCccccChhhhccccceeecccceeecCCCccceEEEeecCcceEEEeecCCccccccccccchhhhHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhHHHHHhHHHHhhcC
Q 002016          959 ALVAAIFVTWVLSEKKELREKWR  981 (981)
Q Consensus       959 ~L~~~~~v~~~~~~~K~L~~~W~  981 (981)
                      ||++|+|++||++++|+||+||+
T Consensus       888 gLv~atyitk~La~~K~L~~~W~  910 (910)
T KOG2103|consen  888 GLVVATYITKPLASKKLLKSKWR  910 (910)
T ss_pred             HHHHhhhehhhhhhhhhhhhhcC
Confidence            99999999999999999999996

>PF07774 DUF1620: Protein of unknown function (DUF1620); InterPro: IPR011678 These sequences are mainly derived from predicted eukaryotic proteins Back     alignment and domain information
>PRK11138 outer membrane biogenesis protein BamB; Provisional Back     alignment and domain information
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL Back     alignment and domain information
>PRK11138 outer membrane biogenesis protein BamB; Provisional Back     alignment and domain information
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A Back     alignment and domain information
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL Back     alignment and domain information
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases Back     alignment and domain information
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases Back     alignment and domain information
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A Back     alignment and domain information
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family Back     alignment and domain information
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family Back     alignment and domain information
>COG1520 FOG: WD40-like repeat [Function unknown] Back     alignment and domain information
>COG1520 FOG: WD40-like repeat [Function unknown] Back     alignment and domain information
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family Back     alignment and domain information
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family Back     alignment and domain information
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] Back     alignment and domain information
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] Back     alignment and domain information
>COG4993 Gcd Glucose dehydrogenase [Carbohydrate transport and metabolism] Back     alignment and domain information
>COG4993 Gcd Glucose dehydrogenase [Carbohydrate transport and metabolism] Back     alignment and domain information
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein Back     alignment and domain information
>PF01011 PQQ: PQQ enzyme repeat family Back     alignment and domain information
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A Back     alignment and domain information
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain Back     alignment and domain information
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto Back     alignment and domain information
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein Back     alignment and domain information
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A Back     alignment and domain information
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain Back     alignment and domain information
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 Back     alignment and domain information
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto Back     alignment and domain information
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A Back     alignment and domain information
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A Back     alignment and domain information
>PF01011 PQQ: PQQ enzyme repeat family Back     alignment and domain information
>smart00564 PQQ beta-propeller repeat Back     alignment and domain information
>PTZ00421 coronin; Provisional Back     alignment and domain information
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 Back     alignment and domain information
>KOG2103 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>smart00564 PQQ beta-propeller repeat Back     alignment and domain information
>KOG1539 consensus WD repeat protein [General function prediction only] Back     alignment and domain information
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] Back     alignment and domain information
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 Back     alignment and domain information
>PTZ00420 coronin; Provisional Back     alignment and domain information
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins Back     alignment and domain information
>PHA02713 hypothetical protein; Provisional Back     alignment and domain information
>PTZ00421 coronin; Provisional Back     alignment and domain information
>KOG2048 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG2048 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] Back     alignment and domain information
>KOG1539 consensus WD repeat protein [General function prediction only] Back     alignment and domain information
>PLN02919 haloacid dehalogenase-like hydrolase family protein Back     alignment and domain information
>PHA03098 kelch-like protein; Provisional Back     alignment and domain information
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 Back     alignment and domain information
>PHA02790 Kelch-like protein; Provisional Back     alignment and domain information
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins Back     alignment and domain information
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] Back     alignment and domain information
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST) Back     alignment and domain information
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 Back     alignment and domain information
>PRK11028 6-phosphogluconolactonase; Provisional Back     alignment and domain information
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] Back     alignment and domain information
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein Back     alignment and domain information
>KOG2055 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>COG4257 Vgb Streptogramin lyase [Defense mechanisms] Back     alignment and domain information
>KOG3881 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PLN00181 protein SPA1-RELATED; Provisional Back     alignment and domain information
>PLN00181 protein SPA1-RELATED; Provisional Back     alignment and domain information
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein Back     alignment and domain information
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] Back     alignment and domain information
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] Back     alignment and domain information
>PHA02713 hypothetical protein; Provisional Back     alignment and domain information
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] Back     alignment and domain information
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>PRK11028 6-phosphogluconolactonase; Provisional Back     alignment and domain information
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only] Back     alignment and domain information
>PTZ00420 coronin; Provisional Back     alignment and domain information
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] Back     alignment and domain information
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional Back     alignment and domain information
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family Back     alignment and domain information
>PLN02919 haloacid dehalogenase-like hydrolase family protein Back     alignment and domain information
>PHA02790 Kelch-like protein; Provisional Back     alignment and domain information
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species Back     alignment and domain information
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species Back     alignment and domain information
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] Back     alignment and domain information
>KOG1274 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] Back     alignment and domain information
>PRK05137 tolB translocation protein TolB; Provisional Back     alignment and domain information
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family Back     alignment and domain information
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST) Back     alignment and domain information
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only] Back     alignment and domain information
>PRK03629 tolB translocation protein TolB; Provisional Back     alignment and domain information
>PRK04922 tolB translocation protein TolB; Provisional Back     alignment and domain information
>KOG0649 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] Back     alignment and domain information
>PRK04792 tolB translocation protein TolB; Provisional Back     alignment and domain information
>KOG0270 consensus WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query981
3q7m_A376 Lipoprotein YFGL, BAMB; beta-propeller, BAM comple 1e-10
3q7m_A376 Lipoprotein YFGL, BAMB; beta-propeller, BAM comple 2e-10
3q7m_A376 Lipoprotein YFGL, BAMB; beta-propeller, BAM comple 3e-10
3q7m_A376 Lipoprotein YFGL, BAMB; beta-propeller, BAM comple 2e-09
3q7m_A376 Lipoprotein YFGL, BAMB; beta-propeller, BAM comple 2e-07
3q7m_A376 Lipoprotein YFGL, BAMB; beta-propeller, BAM comple 1e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-07
2hz6_A369 Endoplasmic reticulum to nucleus signalling 1 isof 8e-09
2hz6_A369 Endoplasmic reticulum to nucleus signalling 1 isof 7e-08
3hxj_A330 Pyrrolo-quinoline quinone; all beta protein. incom 2e-07
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A Length = 376 Back     alignment and structure
 Score = 63.7 bits (155), Expect = 1e-10
 Identities = 26/146 (17%), Positives = 56/146 (38%), Gaps = 17/146 (11%)

Query: 55  RVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLP 114
            V        + +LDLR G+I W+  LG    V+   +  G  +  +  +   + A  + 
Sbjct: 241 VVFALAYNGNLTALDLRSGQIMWKRELG---SVNDFIVD-GNRIYLVDQND-RVMALTID 295

Query: 115 DGQMVWESF-LRGSKHSKPLLLVPTNLKVDKDSLILVSSKGCLHAVSSIDGEILWTRDFA 173
            G  +W    L     + P+        +   +L++  S+G LH ++  DG  +  +   
Sbjct: 296 GGVTLWTQSDLLHRLLTSPV--------LYNGNLVVGDSEGYLHWINVEDGRFVAQQKVD 347

Query: 174 AESVEVQQVIQLDESDQIYVVGYAGS 199
           +   + + V       ++ +    G+
Sbjct: 348 SSGFQTEPVA---ADGKLLIQAKDGT 370
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A Length = 376 Back     alignment and structure
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A Length = 376 Back     alignment and structure
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A Length = 376 Back     alignment and structure
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A Length = 376 Back     alignment and structure
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A Length = 376 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} Length = 369 Back     alignment and structure
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} Length = 369 Back     alignment and structure
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} Length = 330 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query981
3q7m_A376 Lipoprotein YFGL, BAMB; beta-propeller, BAM comple 99.75
3q7m_A376 Lipoprotein YFGL, BAMB; beta-propeller, BAM comple 99.69
1flg_A582 Protein (quinoprotein ethanol dehydrogenase); supe 99.58
2ad6_A571 Methanol dehydrogenase subunit 1; PQQ configuratio 99.55
1w6s_A599 Methanol dehydrogenase subunit 1; anisotropic, ele 99.55
1kb0_A677 Quinohemoprotein alcohol dehydrogenase; beta-prope 99.54
1yiq_A689 Quinohemoprotein alcohol dehydrogenase; electron t 99.53
1kv9_A668 Type II quinohemoprotein alcohol dehydrogenase; el 99.51
2hz6_A369 Endoplasmic reticulum to nucleus signalling 1 isof 99.47
1flg_A582 Protein (quinoprotein ethanol dehydrogenase); supe 99.42
1kb0_A677 Quinohemoprotein alcohol dehydrogenase; beta-prope 99.42
1kv9_A668 Type II quinohemoprotein alcohol dehydrogenase; el 99.4
2ad6_A571 Methanol dehydrogenase subunit 1; PQQ configuratio 99.4
1w6s_A599 Methanol dehydrogenase subunit 1; anisotropic, ele 99.39
3no2_A276 Uncharacterized protein; six-bladed beta-propeller 99.38
2be1_A339 Serine/threonine-protein kinase/endoribonuclease; 99.34
3no2_A276 Uncharacterized protein; six-bladed beta-propeller 99.34
1yiq_A689 Quinohemoprotein alcohol dehydrogenase; electron t 99.33
2hz6_A369 Endoplasmic reticulum to nucleus signalling 1 isof 99.32
3vgz_A353 Uncharacterized protein YNCE; beta-propeller, prot 99.07
2be1_A339 Serine/threonine-protein kinase/endoribonuclease; 98.99
3hxj_A330 Pyrrolo-quinoline quinone; all beta protein. incom 98.97
3hxj_A330 Pyrrolo-quinoline quinone; all beta protein. incom 98.91
3vgz_A353 Uncharacterized protein YNCE; beta-propeller, prot 98.84
3dsm_A328 Uncharacterized protein bacuni_02894; seven_blated 98.59
1l0q_A391 Surface layer protein; SLP, S-layer, 7-bladed beta 98.44
3dsm_A328 Uncharacterized protein bacuni_02894; seven_blated 98.44
1l0q_A391 Surface layer protein; SLP, S-layer, 7-bladed beta 98.43
1nir_A543 Nitrite reductase; hemoprotein, denitrification, d 98.41
2ovr_B445 FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 98.3
2iwa_A266 Glutamine cyclotransferase; pyroglutamate, acyltra 98.21
3bws_A433 Protein LP49; two-domain, immunoglobulin-like, 7-b 98.19
1pby_B337 Quinohemoprotein amine dehydrogenase 40 kDa subuni 98.17
3bws_A433 Protein LP49; two-domain, immunoglobulin-like, 7-b 98.17
1pby_B337 Quinohemoprotein amine dehydrogenase 40 kDa subuni 98.12
1nir_A543 Nitrite reductase; hemoprotein, denitrification, d 97.97
2ovr_B445 FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 97.94
3nok_A268 Glutaminyl cyclase; beta-propeller, cyclotransfera 97.94
1qks_A567 Cytochrome CD1 nitrite reductase; enzyme, oxidored 97.92
3ow8_A321 WD repeat-containing protein 61; structural genomi 97.91
3v7d_B464 Cell division control protein 4; WD 40 domain, pho 97.9
3mbr_X243 Glutamine cyclotransferase; beta-propeller; 1.44A 97.88
1gxr_A337 ESG1, transducin-like enhancer protein 1; transcri 97.86
3nol_A262 Glutamine cyclotransferase; beta-propeller, glutam 97.84
1r5m_A425 SIR4-interacting protein SIF2; transcription corep 97.84
3u4y_A331 Uncharacterized protein; structural genomics, PSI- 97.8
3u4y_A331 Uncharacterized protein; structural genomics, PSI- 97.76
3vl1_A420 26S proteasome regulatory subunit RPN14; beta-prop 97.74
1p22_A435 F-BOX/WD-repeat protein 1A; ubiquitination, degrad 97.73
3sjl_D386 Methylamine dehydrogenase heavy chain; MAUG, C-hem 97.73
4ery_A312 WD repeat-containing protein 5; WD40, WIN motif, b 97.72
4aez_A401 CDC20, WD repeat-containing protein SLP1; cell cyc 97.71
1qks_A567 Cytochrome CD1 nitrite reductase; enzyme, oxidored 97.7
1jmx_B349 Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 97.69
4gqb_B344 Methylosome protein 50; TIM barrel, beta-propeller 97.67
3c75_H426 MADH, methylamine dehydrogenase heavy chain; coppe 97.66
1gxr_A337 ESG1, transducin-like enhancer protein 1; transcri 97.64
3v7d_B464 Cell division control protein 4; WD 40 domain, pho 97.63
2aq5_A402 Coronin-1A; WD40 repeat, 7-bladed beta-propeller, 97.63
3zwl_B369 Eukaryotic translation initiation factor 3 subuni; 97.6
3ow8_A321 WD repeat-containing protein 61; structural genomi 97.54
4ery_A312 WD repeat-containing protein 5; WD40, WIN motif, b 97.53
1jmx_B349 Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 97.53
1q7f_A286 NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL 97.53
3mkq_A814 Coatomer beta'-subunit; beta-propeller, alpha-sole 97.52
2ynn_A304 Coatomer subunit beta'; protein transport, peptide 97.52
1q7f_A286 NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL 97.47
1r5m_A425 SIR4-interacting protein SIF2; transcription corep 97.47
4aez_A401 CDC20, WD repeat-containing protein SLP1; cell cyc 97.44
3hfq_A347 Uncharacterized protein LP_2219; Q88V64_lacpl, NES 97.44
2iwa_A266 Glutamine cyclotransferase; pyroglutamate, acyltra 97.43
1sq9_A397 Antiviral protein SKI8; WD repeat, beta-transducin 97.43
3fvz_A329 Peptidyl-glycine alpha-amidating monooxygenase; be 97.35
3vl1_A420 26S proteasome regulatory subunit RPN14; beta-prop 97.34
1p22_A435 F-BOX/WD-repeat protein 1A; ubiquitination, degrad 97.31
2mad_H373 Methylamine dehydrogenase (heavy subunit); oxidore 97.28
3zwl_B369 Eukaryotic translation initiation factor 3 subuni; 97.26
3sfz_A1249 APAF-1, apoptotic peptidase activating factor 1; a 97.25
3mbr_X243 Glutamine cyclotransferase; beta-propeller; 1.44A 97.24
3nok_A268 Glutaminyl cyclase; beta-propeller, cyclotransfera 97.2
3hx6_A570 Type 4 fimbrial biogenesis protein PILY1; beta pro 97.2
1vyh_C410 Platelet-activating factor acetylhydrolase IB alph 97.19
3nol_A262 Glutamine cyclotransferase; beta-propeller, glutam 97.17
1ri6_A343 Putative isomerase YBHE; 7-bladed propeller, enzym 97.16
2mad_H373 Methylamine dehydrogenase (heavy subunit); oxidore 97.15
4a11_B408 DNA excision repair protein ERCC-8; DNA binding pr 97.13
1pgu_A615 Actin interacting protein 1; WD repeat, seven-blad 97.13
3c75_H426 MADH, methylamine dehydrogenase heavy chain; coppe 97.09
1got_B340 GT-beta; complex (GTP-binding/transducer), G prote 97.06
3i2n_A357 WD repeat-containing protein 92; WD40 repeats, str 97.04
1erj_A393 Transcriptional repressor TUP1; beta-propeller, tr 97.02
3sjl_D386 Methylamine dehydrogenase heavy chain; MAUG, C-hem 97.0
4g56_B357 MGC81050 protein; protein arginine methyltransfera 96.97
2pbi_B354 Guanine nucleotide-binding protein subunit beta 5; 96.96
3i2n_A357 WD repeat-containing protein 92; WD40 repeats, str 96.95
2ynn_A304 Coatomer subunit beta'; protein transport, peptide 96.94
3odt_A313 Protein DOA1; ubiquitin, nuclear protein; HET: MSE 96.93
2qc5_A300 Streptogramin B lactonase; beta propeller, lyase; 96.91
3sfz_A1249 APAF-1, apoptotic peptidase activating factor 1; a 96.87
3odt_A313 Protein DOA1; ubiquitin, nuclear protein; HET: MSE 96.87
3mkq_A814 Coatomer beta'-subunit; beta-propeller, alpha-sole 96.84
1sq9_A397 Antiviral protein SKI8; WD repeat, beta-transducin 96.8
3hfq_A347 Uncharacterized protein LP_2219; Q88V64_lacpl, NES 96.78
2z2n_A299 Virginiamycin B lyase; seven-bladed beta-propeller 96.77
2aq5_A402 Coronin-1A; WD40 repeat, 7-bladed beta-propeller, 96.76
3mmy_A368 MRNA export factor; mRNA export, nuclear protein; 96.74
2z2n_A299 Virginiamycin B lyase; seven-bladed beta-propeller 96.74
3jrp_A379 Fusion protein of protein transport protein SEC13 96.71
3lrv_A343 PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu 96.66
2pbi_B354 Guanine nucleotide-binding protein subunit beta 5; 96.63
3k26_A366 Polycomb protein EED; WD40, structural genomics, N 96.62
3gre_A437 Serine/threonine-protein kinase VPS15; seven-blade 96.61
3mmy_A368 MRNA export factor; mRNA export, nuclear protein; 96.58
3k26_A366 Polycomb protein EED; WD40, structural genomics, N 96.56
2qc5_A300 Streptogramin B lactonase; beta propeller, lyase; 96.56
3frx_A319 Guanine nucleotide-binding protein subunit beta- l 96.55
4a11_B408 DNA excision repair protein ERCC-8; DNA binding pr 96.47
1erj_A393 Transcriptional repressor TUP1; beta-propeller, tr 96.45
3fvz_A329 Peptidyl-glycine alpha-amidating monooxygenase; be 96.44
4g56_B357 MGC81050 protein; protein arginine methyltransfera 96.42
4gqb_B344 Methylosome protein 50; TIM barrel, beta-propeller 96.41
1got_B340 GT-beta; complex (GTP-binding/transducer), G prote 96.38
1k8k_C372 P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- 96.37
2oiz_A361 Aromatic amine dehydrogenase, large subunit; oxido 96.28
4aow_A340 Guanine nucleotide-binding protein subunit beta-2; 96.27
4gga_A420 P55CDC, cell division cycle protein 20 homolog; ce 96.24
4aow_A340 Guanine nucleotide-binding protein subunit beta-2; 96.23
3gre_A437 Serine/threonine-protein kinase VPS15; seven-blade 96.21
2oiz_A361 Aromatic amine dehydrogenase, large subunit; oxido 96.21
1yfq_A342 Cell cycle arrest protein BUB3; WD repeat WD40 rep 96.13
1pgu_A615 Actin interacting protein 1; WD repeat, seven-blad 96.09
3lrv_A343 PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu 96.04
1vyh_C410 Platelet-activating factor acetylhydrolase IB alph 95.97
3jrp_A379 Fusion protein of protein transport protein SEC13 95.96
1rwi_B270 Serine/threonine-protein kinase PKND; beta propell 95.95
2pm9_A416 Protein WEB1, protein transport protein SEC31; bet 95.92
4asc_A315 Kelch repeat and BTB domain-containing protein 5; 95.9
3ei3_B383 DNA damage-binding protein 2; UV-damage, DDB, nucl 95.86
4ggc_A318 P55CDC, cell division cycle protein 20 homolog; ce 95.81
3scy_A361 Hypothetical bacterial 6-phosphogluconolactonase; 95.77
2vdu_B450 TRNA (guanine-N(7)-)-methyltransferase- associated 95.76
1k8k_C372 P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- 95.74
4h5i_A365 Guanine nucleotide-exchange factor SEC12; copii ve 95.73
3hx6_A570 Type 4 fimbrial biogenesis protein PILY1; beta pro 95.67
1ri6_A343 Putative isomerase YBHE; 7-bladed propeller, enzym 95.66
3f3f_A351 Nucleoporin SEH1; structural protein, protein comp 95.65
3iz6_a380 40S ribosomal protein RACK1 (RACK1); eukaryotic ri 95.6
2hqs_A415 Protein TOLB; TOLB, PAL, TOL, transport protein-li 95.6
1rwi_B270 Serine/threonine-protein kinase PKND; beta propell 95.58
1pjx_A314 Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries 95.46
2pm9_A416 Protein WEB1, protein transport protein SEC31; bet 95.36
3ei3_B383 DNA damage-binding protein 2; UV-damage, DDB, nucl 95.35
2vdu_B450 TRNA (guanine-N(7)-)-methyltransferase- associated 95.24
1yfq_A342 Cell cycle arrest protein BUB3; WD repeat WD40 rep 95.22
2fp8_A322 Strictosidine synthase; six bladed beta propeller 95.21
3g4e_A297 Regucalcin; six bladed beta-propeller, gluconolcat 95.21
3vu4_A355 KMHSV2; beta-propeller fold, protein transport; 2. 95.18
2p4o_A306 Hypothetical protein; putative lactonase, structur 95.17
2woz_A318 Kelch repeat and BTB domain-containing protein 10; 95.08
2vpj_A301 Kelch-like protein 12; adaptor protein, WNT signal 95.07
3jro_A753 Fusion protein of protein transport protein SEC13 94.87
3e5z_A296 Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco 94.87
4e54_B435 DNA damage-binding protein 2; beta barrel, double 94.86
3dw8_B447 Serine/threonine-protein phosphatase 2A 55 kDa RE 94.84
2ecf_A741 Dipeptidyl peptidase IV; prolyl oligopeptidase fam 94.83
3frx_A319 Guanine nucleotide-binding protein subunit beta- l 94.69
1jof_A365 Carboxy-CIS,CIS-muconate cyclase; beta-propeller, 94.66
4asc_A315 Kelch repeat and BTB domain-containing protein 5; 94.64
4gga_A420 P55CDC, cell division cycle protein 20 homolog; ce 94.64
1zgk_A308 Kelch-like ECH-associated protein 1; beta-propelle 94.62
3hrp_A409 Uncharacterized protein; NP_812590.1, structural g 94.61
3pe7_A388 Oligogalacturonate lyase; seven-bladed beta-propel 94.59
3v9f_A781 Two-component system sensor histidine kinase/RESP 94.58
3dm0_A694 Maltose-binding periplasmic protein fused with RAC 94.56
1pjx_A314 Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries 94.53
3e5z_A296 Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco 94.42
3iz6_a380 40S ribosomal protein RACK1 (RACK1); eukaryotic ri 94.42
2xn4_A302 Kelch-like protein 2; structural protein, cytoskel 94.29
1mda_H368 Methylamine dehydrogenase (heavy subunit); electro 94.26
2xyi_A430 Probable histone-binding protein CAF1; transcripti 94.25
2hqs_A415 Protein TOLB; TOLB, PAL, TOL, transport protein-li 94.22
3dm0_A694 Maltose-binding periplasmic protein fused with RAC 94.19
1nr0_A611 Actin interacting protein 1; beta propeller, WD40 94.09
3ii7_A306 Kelch-like protein 7; protein-binding, kelch-repea 94.08
3f3f_A351 Nucleoporin SEH1; structural protein, protein comp 93.98
2dg1_A333 DRP35, lactonase; beta propeller, hydrolase; 1.72A 93.96
3ii7_A306 Kelch-like protein 7; protein-binding, kelch-repea 93.84
2p9w_A334 MAL S 1 allergenic protein; beta propeller; 1.35A 93.84
2oaj_A902 Protein SNI1; WD40 repeat, beta propeller, endocyt 93.8
3pe7_A388 Oligogalacturonate lyase; seven-bladed beta-propel 93.73
1mda_H368 Methylamine dehydrogenase (heavy subunit); electro 93.69
3scy_A361 Hypothetical bacterial 6-phosphogluconolactonase; 93.62
4h5i_A365 Guanine nucleotide-exchange factor SEC12; copii ve 93.56
2vpj_A301 Kelch-like protein 12; adaptor protein, WNT signal 93.43
2xzm_R343 RACK1; ribosome, translation; 3.93A {Tetrahymena t 93.36
3fm0_A345 Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r 93.32
3hrp_A409 Uncharacterized protein; NP_812590.1, structural g 93.11
4ggc_A318 P55CDC, cell division cycle protein 20 homolog; ce 93.08
2zux_A591 YESW protein; beta-propeller, lyase, rhamnose comp 93.02
3jro_A753 Fusion protein of protein transport protein SEC13 92.79
1fwx_A595 Nitrous oxide reductase; beta-propeller domain, cu 92.76
2ghs_A326 AGR_C_1268P; regucalcin, structural genomics, join 92.69
2p4o_A306 Hypothetical protein; putative lactonase, structur 92.67
3dwl_C377 Actin-related protein 2/3 complex subunit 1; prope 92.41
4gq1_A393 NUP37; propeller, transport protein; 2.40A {Schizo 92.13
2xdw_A710 Prolyl endopeptidase; alpha/beta-hydrolase, amnesi 92.05
2ecf_A741 Dipeptidyl peptidase IV; prolyl oligopeptidase fam 92.0
2oaj_A902 Protein SNI1; WD40 repeat, beta propeller, endocyt 91.97
2xyi_A430 Probable histone-binding protein CAF1; transcripti 91.97
3g4e_A297 Regucalcin; six bladed beta-propeller, gluconolcat 91.94
2ymu_A577 WD-40 repeat protein; unknown function, two domain 91.87
3v9f_A781 Two-component system sensor histidine kinase/RESP 91.85
1nr0_A611 Actin interacting protein 1; beta propeller, WD40 91.8
2ymu_A577 WD-40 repeat protein; unknown function, two domain 91.7
3dw8_B447 Serine/threonine-protein phosphatase 2A 55 kDa RE 91.62
1zgk_A308 Kelch-like ECH-associated protein 1; beta-propelle 91.53
3tc9_A430 Hypothetical hydrolase; 6-bladed beta-propeller, i 91.5
4a2l_A795 BT_4663, two-component system sensor histidine kin 91.47
4a2l_A795 BT_4663, two-component system sensor histidine kin 91.38
4hw6_A433 Hypothetical protein, IPT/TIG domain protein; puta 91.34
3vu4_A355 KMHSV2; beta-propeller fold, protein transport; 2. 91.2
2dg1_A333 DRP35, lactonase; beta propeller, hydrolase; 1.72A 91.2
3qqz_A255 Putative uncharacterized protein YJIK; MCSG, PSI-2 91.16
2qe8_A343 Uncharacterized protein; structural genomics, join 91.05
2xdw_A710 Prolyl endopeptidase; alpha/beta-hydrolase, amnesi 91.0
2ojh_A297 Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 90.75
2z3z_A706 Dipeptidyl aminopeptidase IV; peptidase family S9, 90.65
2woz_A318 Kelch repeat and BTB domain-containing protein 10; 90.57
2p9w_A334 MAL S 1 allergenic protein; beta propeller; 1.35A 89.98
2zuy_A620 YESX protein; beta-propeller, lyase; 1.65A {Bacill 88.8
3dr2_A305 Exported gluconolactonase; gluconolactonase SMP-30 88.54
2j04_A588 TAU60, YPL007P, hypothetical protein YPL007C; beta 88.52
1jof_A365 Carboxy-CIS,CIS-muconate cyclase; beta-propeller, 88.27
4e54_B435 DNA damage-binding protein 2; beta barrel, double 88.21
2ghs_A326 AGR_C_1268P; regucalcin, structural genomics, join 88.14
2xn4_A302 Kelch-like protein 2; structural protein, cytoskel 88.08
1z68_A719 Fibroblast activation protein, alpha subunit; sepr 87.84
2uvk_A357 YJHT; unknown function, hypothetical protein, sial 87.83
3dr2_A305 Exported gluconolactonase; gluconolactonase SMP-30 87.64
2xzm_R343 RACK1; ribosome, translation; 3.93A {Tetrahymena t 87.47
2pm7_B297 Protein transport protein SEC13, protein transport 87.18
2fp8_A322 Strictosidine synthase; six bladed beta propeller 87.01
1fwx_A595 Nitrous oxide reductase; beta-propeller domain, cu 86.71
3fm0_A345 Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r 86.66
3dwl_C377 Actin-related protein 2/3 complex subunit 1; prope 86.56
2uvk_A357 YJHT; unknown function, hypothetical protein, sial 86.31
2w18_A356 PALB2, fancn, partner and localizer of BRCA2; fanc 86.2
3c5m_A396 Oligogalacturonate lyase; blade-shaped beta-propel 86.1
1npe_A267 Nidogen, entactin; glycoprotein, basement membrane 86.09
1npe_A267 Nidogen, entactin; glycoprotein, basement membrane 85.44
2zwa_A695 Leucine carboxyl methyltransferase 2; HET: SAH CIT 85.32
3elq_A571 Arylsulfate sulfotransferase; beta propeller, prot 85.01
2qe8_A343 Uncharacterized protein; structural genomics, join 84.54
3elq_A571 Arylsulfate sulfotransferase; beta propeller, prot 84.49
2ece_A462 462AA long hypothetical selenium-binding protein; 83.56
1yr2_A741 Prolyl oligopeptidase; prolyl endopeptidase, mecha 82.7
2ojh_A297 Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 82.58
2z3z_A706 Dipeptidyl aminopeptidase IV; peptidase family S9, 81.91
3iuj_A693 Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas 81.22
1xfd_A723 DIP, dipeptidyl aminopeptidase-like protein 6, dip 81.07
3azo_A662 Aminopeptidase; POP family, hydrolase; 2.00A {Stre 80.7
3m0c_C791 LDL receptor, low-density lipoprotein receptor; pr 80.55
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A Back     alignment and structure
Probab=99.75  E-value=8.7e-16  Score=172.94  Aligned_cols=217  Identities=17%  Similarity=0.297  Sum_probs=147.2

Q ss_pred             cccccEeEEEeccCceee-eeeeecccCCCEEEEEcCCCEEEEEECCCCccceEEEcCCC--------cceeeeeeeecC
Q 002016           26 DQVGLMDWHQQYIGKVKH-AVFHTQKTGRKRVVVSTEENVIASLDLRHGEIFWRHVLGIN--------DVVDGIDIALGK   96 (981)
Q Consensus        26 dqvG~~dW~~~~vG~~~~-~~f~~~~~~~~~VyvaT~~g~L~ALd~~tG~ivWR~~l~~~--------~~i~~l~~~~~~   96 (981)
                      +..++..|+.++-+.... ..-..|...+++||+++.+|.|+|+|++||+++|++.+...        ..+... +...+
T Consensus        25 ~~~~~~~W~~~~~~~~~~~~~~~~p~v~~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~~  103 (376)
T 3q7m_A           25 QFTPTTAWSTSVGSGIGNFYSNLHPALADNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGG-VTVSG  103 (376)
T ss_dssp             SSCCEEEEEECCTTTTTTSCCCCCCEEETTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEE-EEEET
T ss_pred             CCcceEEeEEecCCCccccceeeccEEECCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccC-ceEeC
Confidence            456789999987322211 11125677799999999999999999999999999998542        112222 34556


Q ss_pred             eEEEEEccCCEEEEEeCCCCcEeEEEeccCccccCCceeecccccccCCcEEEEE-eCCEEEEEECCCCcEeEEEeccCc
Q 002016           97 YVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILVS-SKGCLHAVSSIDGEILWTRDFAAE  175 (981)
Q Consensus        97 ~vV~Vs~~g~~V~A~da~tG~llWe~~~~~~~~s~~~~~v~~~~~~~~~~~V~V~-~~g~l~aLd~~tG~~~W~~~~~~~  175 (981)
                      +.+++++.++.|+++|++||+++|+........  ..+.+       .++.|++. .+|.|+++|++||+++|++....+
T Consensus       104 ~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~--~~p~~-------~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~  174 (376)
T 3q7m_A          104 GHVYIGSEKAQVYALNTSDGTVAWQTKVAGEAL--SRPVV-------SDGLVLIHTSNGQLQALNEADGAVKWTVNLDMP  174 (376)
T ss_dssp             TEEEEEETTSEEEEEETTTCCEEEEEECSSCCC--SCCEE-------ETTEEEEECTTSEEEEEETTTCCEEEEEECCC-
T ss_pred             CEEEEEcCCCEEEEEECCCCCEEEEEeCCCceE--cCCEE-------ECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCC
Confidence            677777666799999999999999999876543  22222       25677776 589999999999999999987644


Q ss_pred             ceeee-EEEEeecCCeEEEEEecCCceeEEEEEECCCCceeeeeeeeccCC---------ccCceEEEcCcEEEEEECCC
Q 002016          176 SVEVQ-QVIQLDESDQIYVVGYAGSSQFHAYQINAMNGELLNHETAAFSGG---------FVGDVALVSSDTLVTLDTTR  245 (981)
Q Consensus       176 ~~~~~-~vv~s~~~~~Vyvvg~~g~~~~~v~aLd~~tG~~lw~~~v~~p~~---------~~~~~~~vg~~~lv~~d~~~  245 (981)
                      ..... ...+...++.+|+....|    .++++|+.+|+.+|+.....+.+         ....+++.+ +.+++.. .+
T Consensus       175 ~~~~~~~~~~~~~~~~v~~g~~~g----~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~v~~~~-~~  248 (376)
T 3q7m_A          175 SLSLRGESAPTTAFGAAVVGGDNG----RVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVN-GVVFALA-YN  248 (376)
T ss_dssp             ----CCCCCCEEETTEEEECCTTT----EEEEEETTTCCEEEEEECCC-----------CCCCCCEEET-TEEEEEC-TT
T ss_pred             ceeecCCCCcEEECCEEEEEcCCC----EEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEEC-CEEEEEe-cC
Confidence            32100 011123577887743333    69999999999999998765432         223334334 4333332 46


Q ss_pred             CeEEEEEeecCee
Q 002016          246 SILVTVSFKNRKI  258 (981)
Q Consensus       246 g~L~v~~L~sg~~  258 (981)
                      +.+++++..+|++
T Consensus       249 g~l~~~d~~tG~~  261 (376)
T 3q7m_A          249 GNLTALDLRSGQI  261 (376)
T ss_dssp             SCEEEEETTTCCE
T ss_pred             cEEEEEECCCCcE
Confidence            7899999988874
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A Back     alignment and structure
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 Back     alignment and structure
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* Back     alignment and structure
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* Back     alignment and structure
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 Back     alignment and structure
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} Back     alignment and structure
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 Back     alignment and structure
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} Back     alignment and structure
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 Back     alignment and structure
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 Back     alignment and structure
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 Back     alignment and structure
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* Back     alignment and structure
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* Back     alignment and structure
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} Back     alignment and structure
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae} Back     alignment and structure
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} Back     alignment and structure
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} Back     alignment and structure
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} Back     alignment and structure
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* Back     alignment and structure
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae} Back     alignment and structure
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} Back     alignment and structure
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} Back     alignment and structure
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* Back     alignment and structure
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} Back     alignment and structure
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 Back     alignment and structure
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} Back     alignment and structure
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 Back     alignment and structure
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* Back     alignment and structure
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Back     alignment and structure
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* Back     alignment and structure
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} Back     alignment and structure
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* Back     alignment and structure
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} Back     alignment and structure
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* Back     alignment and structure
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* Back     alignment and structure
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Back     alignment and structure
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} Back     alignment and structure
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* Back     alignment and structure
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} Back     alignment and structure
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* Back     alignment and structure
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} Back     alignment and structure
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A Back     alignment and structure
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A Back     alignment and structure
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} Back     alignment and structure
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} Back     alignment and structure
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} Back     alignment and structure
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A Back     alignment and structure
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 Back     alignment and structure
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... Back     alignment and structure
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... Back     alignment and structure
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} Back     alignment and structure
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* Back     alignment and structure
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* Back     alignment and structure
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} Back     alignment and structure
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} Back     alignment and structure
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A Back     alignment and structure
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* Back     alignment and structure
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A Back     alignment and structure
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} Back     alignment and structure
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} Back     alignment and structure
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... Back     alignment and structure
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* Back     alignment and structure
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 Back     alignment and structure
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A Back     alignment and structure
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A Back     alignment and structure
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 Back     alignment and structure
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} Back     alignment and structure
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} Back     alignment and structure
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} Back     alignment and structure
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* Back     alignment and structure
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X Back     alignment and structure
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* Back     alignment and structure
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A Back     alignment and structure
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 Back     alignment and structure
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* Back     alignment and structure
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} Back     alignment and structure
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Back     alignment and structure
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} Back     alignment and structure
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} Back     alignment and structure
>3hx6_A Type 4 fimbrial biogenesis protein PILY1; beta propeller, pilus protein, cell adhesion; 2.10A {Pseudomonas aeruginosa} Back     alignment and structure
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 Back     alignment and structure
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A Back     alignment and structure
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 Back     alignment and structure
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* Back     alignment and structure
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} Back     alignment and structure
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A Back     alignment and structure
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} Back     alignment and structure
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* Back     alignment and structure
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} Back     alignment and structure
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 Back     alignment and structure
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... Back     alignment and structure
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} Back     alignment and structure
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} Back     alignment and structure
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} Back     alignment and structure
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A Back     alignment and structure
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} Back     alignment and structure
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} Back     alignment and structure
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Back     alignment and structure
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} Back     alignment and structure
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A Back     alignment and structure
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X Back     alignment and structure
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} Back     alignment and structure
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* Back     alignment and structure
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A Back     alignment and structure
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} Back     alignment and structure
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* Back     alignment and structure
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} Back     alignment and structure
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} Back     alignment and structure
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} Back     alignment and structure
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A Back     alignment and structure
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} Back     alignment and structure
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} Back     alignment and structure
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A Back     alignment and structure
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} Back     alignment and structure
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* Back     alignment and structure
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} Back     alignment and structure
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 Back     alignment and structure
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* Back     alignment and structure
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} Back     alignment and structure
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} Back     alignment and structure
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* Back     alignment and structure
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C Back     alignment and structure
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... Back     alignment and structure
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a Back     alignment and structure
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A Back     alignment and structure
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a Back     alignment and structure
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} Back     alignment and structure
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... Back     alignment and structure
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A Back     alignment and structure
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A Back     alignment and structure
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} Back     alignment and structure
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 Back     alignment and structure
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} Back     alignment and structure
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A Back     alignment and structure
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} Back     alignment and structure
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} Back     alignment and structure
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* Back     alignment and structure
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} Back     alignment and structure
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A Back     alignment and structure
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} Back     alignment and structure
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C Back     alignment and structure
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A Back     alignment and structure
>3hx6_A Type 4 fimbrial biogenesis protein PILY1; beta propeller, pilus protein, cell adhesion; 2.10A {Pseudomonas aeruginosa} Back     alignment and structure
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 Back     alignment and structure
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A Back     alignment and structure
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} Back     alignment and structure
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A Back     alignment and structure
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A Back     alignment and structure
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... Back     alignment and structure
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} Back     alignment and structure
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* Back     alignment and structure
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} Back     alignment and structure
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A Back     alignment and structure
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* Back     alignment and structure
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B Back     alignment and structure
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A Back     alignment and structure
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 Back     alignment and structure
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} Back     alignment and structure
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} Back     alignment and structure
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} Back     alignment and structure
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} Back     alignment and structure
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* Back     alignment and structure
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} Back     alignment and structure
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} Back     alignment and structure
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* Back     alignment and structure
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 Back     alignment and structure
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} Back     alignment and structure
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A Back     alignment and structure
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A Back     alignment and structure
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} Back     alignment and structure
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} Back     alignment and structure
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} Back     alignment and structure
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} Back     alignment and structure
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... Back     alignment and structure
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} Back     alignment and structure
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} Back     alignment and structure
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} Back     alignment and structure
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 Back     alignment and structure
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B Back     alignment and structure
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A Back     alignment and structure
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} Back     alignment and structure
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A Back     alignment and structure
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} Back     alignment and structure
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A Back     alignment and structure
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A Back     alignment and structure
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} Back     alignment and structure
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} Back     alignment and structure
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} Back     alignment and structure
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} Back     alignment and structure
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 Back     alignment and structure
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A Back     alignment and structure
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A Back     alignment and structure
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} Back     alignment and structure
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R Back     alignment and structure
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} Back     alignment and structure
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} Back     alignment and structure
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} Back     alignment and structure
>2zux_A YESW protein; beta-propeller, lyase, rhamnose complex; HET: RAM; 1.32A {Bacillus subtilis} PDB: 2z8s_A* 2z8r_A* Back     alignment and structure
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} Back     alignment and structure
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A Back     alignment and structure
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 Back     alignment and structure
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 Back     alignment and structure
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} Back     alignment and structure
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A Back     alignment and structure
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* Back     alignment and structure
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} Back     alignment and structure
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} Back     alignment and structure
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B Back     alignment and structure
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B Back     alignment and structure
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} Back     alignment and structure
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} Back     alignment and structure
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A Back     alignment and structure
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} Back     alignment and structure
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} Back     alignment and structure
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A Back     alignment and structure
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} Back     alignment and structure
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* Back     alignment and structure
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* Back     alignment and structure
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} Back     alignment and structure
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A Back     alignment and structure
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A Back     alignment and structure
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} Back     alignment and structure
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} Back     alignment and structure
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* Back     alignment and structure
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} Back     alignment and structure
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* Back     alignment and structure
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} Back     alignment and structure
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} Back     alignment and structure
>2zuy_A YESX protein; beta-propeller, lyase; 1.65A {Bacillus subtilis} Back     alignment and structure
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} Back     alignment and structure
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} Back     alignment and structure
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 Back     alignment and structure
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* Back     alignment and structure
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 Back     alignment and structure
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} Back     alignment and structure
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} Back     alignment and structure
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} Back     alignment and structure
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} Back     alignment and structure
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R Back     alignment and structure
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A Back     alignment and structure
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* Back     alignment and structure
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A Back     alignment and structure
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} Back     alignment and structure
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} Back     alignment and structure
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} Back     alignment and structure
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A Back     alignment and structure
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} Back     alignment and structure
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 Back     alignment and structure
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 Back     alignment and structure
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Back     alignment and structure
>3elq_A Arylsulfate sulfotransferase; beta propeller, protein-substrate complex, periplasm, transesterification, phenol, bacteria; 2.00A {Escherichia coli} PDB: 3ett_A* 3ets_A* Back     alignment and structure
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} Back     alignment and structure
>3elq_A Arylsulfate sulfotransferase; beta propeller, protein-substrate complex, periplasm, transesterification, phenol, bacteria; 2.00A {Escherichia coli} PDB: 3ett_A* 3ets_A* Back     alignment and structure
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} Back     alignment and structure
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} Back     alignment and structure
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} Back     alignment and structure
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* Back     alignment and structure
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* Back     alignment and structure
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 Back     alignment and structure
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A Back     alignment and structure
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query981
d2ad6a1571 Methanol dehydrogenase, heavy chain {Methylophilus 99.33
d1flga_582 Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax 99.29
d1kv9a2560 Quinoprotein alcohol dehydrogenase, N-terminal dom 99.29
d2ad6a1571 Methanol dehydrogenase, heavy chain {Methylophilus 99.25
d1kb0a2573 Quinoprotein alcohol dehydrogenase, N-terminal dom 99.24
d1w6sa_596 Methanol dehydrogenase, heavy chain {Methylobacter 99.21
d1w6sa_596 Methanol dehydrogenase, heavy chain {Methylobacter 99.15
d1kv9a2560 Quinoprotein alcohol dehydrogenase, N-terminal dom 99.09
d1kb0a2573 Quinoprotein alcohol dehydrogenase, N-terminal dom 99.07
d1flga_582 Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax 98.71
d1l0qa2301 Surface layer protein {Archaeon Methanosarcina maz 98.25
d1l0qa2301 Surface layer protein {Archaeon Methanosarcina maz 97.92
d1pbyb_337 Quinohemoprotein amine dehydrogenase B chain {Para 97.9
d1jmxb_346 Quinohemoprotein amine dehydrogenase B chain {Pseu 97.81
d2madh_373 Methylamine dehydrogenase, H-chain {Gram negative 97.79
d1pbyb_337 Quinohemoprotein amine dehydrogenase B chain {Para 97.58
d2bbkh_355 Methylamine dehydrogenase, H-chain {Paracoccus den 97.4
d1hzua2426 C-terminal (heme d1) domain of cytochrome cd1-nitr 97.34
d1jmxb_346 Quinohemoprotein amine dehydrogenase B chain {Pseu 97.23
d2ovrb2342 F-box/WD repeat-containing protein 7, FBXW7 {Human 97.15
d1gxra_337 Groucho/tle1, C-terminal domain {Human (Homo sapie 97.04
d1qksa2432 C-terminal (heme d1) domain of cytochrome cd1-nitr 96.97
d1gxra_337 Groucho/tle1, C-terminal domain {Human (Homo sapie 96.92
d1nexb2355 Cdc4 propeller domain {Baker's yeast (Saccharomyce 96.91
d1nr0a1311 Actin interacting protein 1 {Nematode (Caenorhabdi 96.88
d1nexb2355 Cdc4 propeller domain {Baker's yeast (Saccharomyce 96.87
d1erja_388 Tup1, C-terminal domain {Baker's yeast (Saccharomy 96.87
d1nr0a1311 Actin interacting protein 1 {Nematode (Caenorhabdi 96.62
d2ovrb2342 F-box/WD repeat-containing protein 7, FBXW7 {Human 96.51
d1p22a2293 F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom 96.34
d1hzua2426 C-terminal (heme d1) domain of cytochrome cd1-nitr 96.32
d1qksa2432 C-terminal (heme d1) domain of cytochrome cd1-nitr 96.24
d1erja_388 Tup1, C-terminal domain {Baker's yeast (Saccharomy 96.21
d1vyhc1317 Platelet-activating factor acetylhydrolase IB subu 95.91
d1mdah_368 Methylamine dehydrogenase, H-chain {Paracoccus den 95.76
d1mdah_368 Methylamine dehydrogenase, H-chain {Paracoccus den 95.72
d2bbkh_355 Methylamine dehydrogenase, H-chain {Paracoccus den 95.71
d1pgua1325 Actin interacting protein 1 {Baker's yeast (Saccha 95.67
d1vyhc1317 Platelet-activating factor acetylhydrolase IB subu 95.55
d1q7fa_279 Brain tumor cg10719-pa {Fruit fly (Drosophila mela 95.16
d1ri6a_333 Putative isomerase YbhE {Escherichia coli [TaxId: 95.12
d1tbga_340 beta1-subunit of the signal-transducing G protein 95.07
d1nr0a2299 Actin interacting protein 1 {Nematode (Caenorhabdi 95.05
d2madh_373 Methylamine dehydrogenase, H-chain {Gram negative 95.03
d2p4oa1302 Hypothetical protein All0351 homologue {Nostoc pun 94.73
d1pgua1325 Actin interacting protein 1 {Baker's yeast (Saccha 94.37
d1tbga_340 beta1-subunit of the signal-transducing G protein 93.83
d1pjxa_314 Diisopropylfluorophosphatase (phosphotriesterase, 93.67
d1nr0a2299 Actin interacting protein 1 {Nematode (Caenorhabdi 92.71
d1sq9a_393 Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac 92.67
d2dg1a1319 Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 92.18
d1k8kc_371 Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur 91.99
d1q7fa_279 Brain tumor cg10719-pa {Fruit fly (Drosophila mela 91.67
d1k32a3360 Tricorn protease domain 2 {Archaeon Thermoplasma a 91.66
d1yfqa_342 Cell cycle arrest protein BUB3 {Baker's yeast (Sac 90.26
d1p22a2293 F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom 90.2
d1rwia_260 Serine/threonine-protein kinase PknD {Mycobacteriu 88.7
d1k32a3360 Tricorn protease domain 2 {Archaeon Thermoplasma a 86.37
d1ri6a_333 Putative isomerase YbhE {Escherichia coli [TaxId: 86.0
d1k8kc_371 Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur 85.6
d2p4oa1302 Hypothetical protein All0351 homologue {Nostoc pun 84.62
d1pgua2287 Actin interacting protein 1 {Baker's yeast (Saccha 84.28
d1sq9a_393 Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac 83.9
d1qnia2441 Nitrous oxide reductase, N-terminal domain {Pseudo 83.67
d1yfqa_342 Cell cycle arrest protein BUB3 {Baker's yeast (Sac 83.19
d2ghsa1295 Regucalcin {Agrobacterium tumefaciens [TaxId: 358] 81.05
>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} Back     information, alignment and structure
class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=99.33  E-value=2.3e-11  Score=143.20  Aligned_cols=220  Identities=16%  Similarity=0.161  Sum_probs=134.3

Q ss_pred             cEeEEEeccCceeeeeeeecccCCCEEEEEcC-CCEEEEEECC-CCccceEEEcCCCcceee--------eeeeecCeEE
Q 002016           30 LMDWHQQYIGKVKHAVFHTQKTGRKRVVVSTE-ENVIASLDLR-HGEIFWRHVLGINDVVDG--------IDIALGKYVI   99 (981)
Q Consensus        30 ~~dW~~~~vG~~~~~~f~~~~~~~~~VyvaT~-~g~L~ALd~~-tG~ivWR~~l~~~~~i~~--------l~~~~~~~vV   99 (981)
                      +..|.+++ |.... .-.+|...++.||+.|. .|.|+|||++ ||+++||+..+.+.....        -.++..++.+
T Consensus        41 ~~aW~~~~-g~~~~-~~~tP~v~~g~vyv~t~~~~~v~Alda~~tG~~~W~~~~~~~~~~~~~~~~~~~~rg~a~~~~~i  118 (571)
T d2ad6a1          41 KAAWSFST-GVLNG-HEGAPLVIGDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYGAGQI  118 (571)
T ss_dssp             EEEEEEEC-SCCSC-CCSCCEEETTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEE
T ss_pred             eEEEEEeC-CCCCC-cccCCEEECCEEEEecCCCCeEEEEeCCCCCceEEEecCCCCcccccccccCcCCCcceeeCCeE
Confidence            47799887 43211 11246667999999996 7999999985 799999997654421100        0023455666


Q ss_pred             EEEccCCEEEEEeCCCCcEeEEEeccCccc---cCCceeecccccccCCcEEEEEe-------CCEEEEEECCCCcEeEE
Q 002016          100 TLSSDGSTLRAWNLPDGQMVWESFLRGSKH---SKPLLLVPTNLKVDKDSLILVSS-------KGCLHAVSSIDGEILWT  169 (981)
Q Consensus       100 ~Vs~~g~~V~A~da~tG~llWe~~~~~~~~---s~~~~~v~~~~~~~~~~~V~V~~-------~g~l~aLd~~tG~~~W~  169 (981)
                      +++..+++|+|+|++||+++|+..+.....   ....+++       .++.|++..       .|.|.|+|+.||+++|+
T Consensus       119 ~~~~~~g~l~alda~tG~~~w~~~~~~~~~~~~~t~~p~v-------~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~  191 (571)
T d2ad6a1         119 VKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFV-------AKDTVLMGCSGAELGVRGAVNAFDLKTGELKWR  191 (571)
T ss_dssp             EEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEE-------ETTEEEEECBCGGGTCCCEEEEEETTTCCEEEE
T ss_pred             EEEeCCCcEEeeehhhhhhhccccccccccccceeecCeE-------eCCeEEEeeccccccccCcEEEEECCCCcEEEE
Confidence            667767899999999999999998754322   0112222       245677742       68999999999999999


Q ss_pred             EeccCccee-----------------------------------e-eEEEEeecCCeEEEEEecCC------------ce
Q 002016          170 RDFAAESVE-----------------------------------V-QQVIQLDESDQIYVVGYAGS------------SQ  201 (981)
Q Consensus       170 ~~~~~~~~~-----------------------------------~-~~vv~s~~~~~Vyvvg~~g~------------~~  201 (981)
                      +........                                   . .....-...+.+|+..-.+.            +.
T Consensus       192 ~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~vW~~~s~D~~~g~~y~~tg~~~p~~~~~r~g~n~~s  271 (571)
T d2ad6a1         192 AFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWT  271 (571)
T ss_dssp             EESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTT
T ss_pred             EeccCCcccccccccccccccccCcccccccccCCcccccCCCccccccccchhcCeeeeecccccCccccccccccccc
Confidence            875421100                                   0 00010123455655332110            12


Q ss_pred             eEEEEEECCCCceeeeeeeecc--CCcc--Cc-eE--E-E-cCc-EEEEEECCCCeEEEEEeecCee
Q 002016          202 FHAYQINAMNGELLNHETAAFS--GGFV--GD-VA--L-V-SSD-TLVTLDTTRSILVTVSFKNRKI  258 (981)
Q Consensus       202 ~~v~aLd~~tG~~lw~~~v~~p--~~~~--~~-~~--~-v-g~~-~lv~~d~~~g~L~v~~L~sg~~  258 (981)
                      -.++|||++||+.+|.++....  +...  .. ..  + . +.. .++..-..+|.++++|.++|+.
T Consensus       272 ~svvAld~~TG~~~W~~q~~~~D~Wd~D~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~vlDr~tG~~  338 (571)
T d2ad6a1         272 MTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNL  338 (571)
T ss_dssp             TEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCE
T ss_pred             cceeeeeccchhheecccccCccccccccccccceeeeeccCccccceeeccccceEEEEecCCCcE
Confidence            3589999999999999874321  1111  11 11  1 1 211 2333334668888888888873
>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} Back     information, alignment and structure
>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} Back     information, alignment and structure
>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} Back     information, alignment and structure
>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} Back     information, alignment and structure
>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} Back     information, alignment and structure
>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} Back     information, alignment and structure
>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} Back     information, alignment and structure
>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Back     information, alignment and structure
>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Back     information, alignment and structure
>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} Back     information, alignment and structure
>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} Back     information, alignment and structure
>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} Back     information, alignment and structure
>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} Back     information, alignment and structure
>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Back     information, alignment and structure
>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Back     information, alignment and structure
>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} Back     information, alignment and structure
>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} Back     information, alignment and structure
>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} Back     information, alignment and structure