Citrus Sinensis ID: 002018

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980

MDNEDIEGGEEEFRAQLGRKYRPVVAHDRAVLQMSSMDPGSTSDSSPKNVKIDGKENIGSDAREGSAPDNLRVNGSERDSKLELFGFDSLVNILGLRSMTGEQIVAPSSPREGRDGEDAPITYGPPKPSDVKLGTLMGVFIPCLQNILGIIYYIRFTWIVGMGGIGDSLLVVAFCGSCTFLTSISLSAIATNGAMKGGGPYYLIGRALGPEVGVSIGLCFFLGNAVAGAMYVLGAVETFLKAVPAAGMFRETITKVNGTATPEPIQSPSLHDLQIYGIIVTIILCFIVFGGVKIINRVAPTFLIPVLLSIFCIFVGILLASKDDPAPGITGLKLKTFKDNWFSDYQKTNNAGIPDPNGAVDWSFNALVGLFFPAVTGIMAGSNRSASLKDTQRSIPIGTLAATLTTTALYVISVLLFGAAATREELLTDRLLTATIAWPFPAVIHIGIILSTLGAALQSLTGAPRLLAAIANDDILPVLNYFKVAEGREPHIATFFTAFICIGCVIIGNLDLITPTITMFFLLCYSGVNLSCFLLDLLDAPSWRPRWKFHHWSLSLLGSVFCIVIMFLISWSFTVVSLALASLIYYYVCLKGKAGDWGDGLKSAYFQLALRSLRSLGANQVHPKNWYPIPLIFCRPWGKLPENVPCHPKLADFANCMKKKGRGMSIFVSILDGDYHECAEDAKTACKQLATYIDYKRCEGVAEIVVAPNMSEGFRGIVQTMGLGNLKPNIVVMRYPEIWRRENLTEIPATFVGIINDCIVANKAVVIVKGLDEWPNEYQRQYGTIDLYWIVRDGGLMLLLSQLLLTKESFESCKIQVFCIAEEDSDAEVLKADVKKFLYDLRMQAEVIVISMKSWDEQTENGPQQDESLDAFIAAQHRIKNYLAEMKAEAQKSGTPLMADGKPVVVNEQQVEKFLYTTLKLNSTILRHSRMAAVVLVSLPPPPINHPAYCYMEYMDLLVENVPRLLIVRGYRRDVVTLFT

ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHcccccccccccccccccccccccccccccccccccccccccccccccHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEEccccccccccHHHHHHHHHHHHHHHHHHHcHHHHHHHHccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHcccHHHHHHccHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHcccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHcccccccccccccccEEEEEcccccccccccccccccccHHHHHHccccEEEEEEEEccccccHHHHHHHHHHHHHHHHHHcccccEEEEEEcccHHHHHHHHHHHHccccccccEEEEccccccccccccccHHHHHHHHHHHHHcccEEEEEEccccccccccccccccccEEEEcccHHHHHHHHHHccccccccccEEEEEEcccccHHHHHHHHHHHHHHHcccccEEEEEEcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHccccccEEEEEcccccccccHHHHHHHHHHHHcccccEEEEEccccEEEEEcc

ccccccccccccccccccccccEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEHEEccccccHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHccccccccccccHHHHHcHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHcccHHccccccccccccccccHHHHHHHHHHcHHHHHHHcccccccccccHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEEcccHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHcccccEHEEccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHccccccccccccEEEEEEcccccccccccccHHHHHHHHHHHHcccEEEEEEEEEcccccccHHHHHHHHHHHHHHHHHHHccHHHHHEEcccHHHHHHHHHHHcccccccccEEEEEccccccccccHHHHHHHHHHHHHHHHHccEEEEEccccccccccccccccEEEEEEEcccHHHHHHHHHHHHcccHcccEEEEEEEEccccHHHHHHHHHHHHHHHcccccEEEEEEcccccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccccEEEEEEcccccccccHHHHHHHHHHHHcccccEEEEEccccEEEEEEc

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

mdnedieggEEEFRAQLGRKYRPVVAHDRAVLQmssmdpgstsdsspknvKIDGKenigsdaregsapdnlrvngserdsklelFGFDSLVNILGlrsmtgeqivapsspregrdgedAPITYGPPKPSDVKLGTLMGVFIPCLQNILGIIYYIRFTWIVGMGGIGDSLLVVAFCGSCTFLTSISLSAIATNGAMKGGGPYYLIGRALGPEVGVSIGLCFFLGNAVAGAMYVLGAVETFLKAVPAAGMFRETITKVNGTATPEPIQSPSLHDLQIYGIIVTIILCFIVFGGVKIINRVAPTFLIPVLLSIFCIFVGILLASKDDPAPGITGLKLKTFKDNWFSDYQKTNNAGIPDPNGAVDWSFNALVGLFFPAVTGIMAGSNRSASLKDTQRSIPIGTLAATLTTTALYVISVLLFGAAATREELLTDRLLTATIAWPFPAVIHIGIILSTLGAALQSLTGAPRLLAAIANDDILPVLNYFKVAEGREPHIATFFTAFICIGCVIIGNLDLITPTITMFFLLCYSGVNLSCFLLDLLDAPSWRPRWKFHHWSLSLLGSVFCIVIMFLISWSFTVVSLALASLIYYYVCLKGKAGDWGDGLKSAYFQLALRSLRSLGANQVHPKNWYPIPLIFCRPWGKLPENVPCHPKLADFANCMKKKGRGMSIFVSILDGDYHECAEDAKTACKQLATYIDYKRCEGVAEIVVAPNMSEGFRGIVQtmglgnlkpniVVMRYPEIWRRENLTEIPATFVGIINDCIVANKAVVIVKGLDEWPNEYQRQYGTIDLYWIVRDGGLMLLLSQLLLTKESFESCKIQVFCIaeedsdaeVLKADVKKFLYDLRMQAEVIVISMKSWDEQTENGPQQDESLDAFIAAQHRIKNYLAEMKAEAQKSGTPLMADGKPVVVNEQQVEKFLYTTLKLNSTILRHSRMAAVVLVSLPPPPINHPAYCYMEYMDLLVENVPRllivrgyrrdvvtlft

MDNEDIEGGEEEFRAQLGRKYRPVVAHDRAVLQmssmdpgstsdsspKNVKIDGKENIGSDAREGSAPDNLRVNGSERDSKLELFGFDSLVNILGLRSMTGEQIVAPSSPREGRDGEDAPITYGPPKPSDVKLGTLMGVFIPCLQNILGIIYYIRFTWIVGMGGIGDSLLVVAFCGSCTFLTSISLSAIATNGAMKGGGPYYLIGRALGPEVGVSIGLCFFLGNAVAGAMYVLGAVETFLKAVPAAGMFRETITKVNGTATPEPIQSPSLHDLQIYGIIVTIILCFIVFGGVKIINRVAPTFLIPVLLSIFCIFVGILLASKDDPAPGITGLKLKTFKDNWFSDYQKTNNAGIPDPNGAVDWSFNALVGLFFPAVTGIMAGSNRSASLKDTQRSIPIGtlaatltttalYVISVLLFGAAatreelltdrlltatIAWPFPAVIHIGIILSTLGAALQSLTGAPRLLAAIANDDILPVLNYFKVAEGREPHIATFFTAFICIGCVIIGNLDLITPTITMFFLLCYSGVNLSCFLLDLLDAPSWRPRWKFHHWSLSLLGSVFCIVIMFLISWSFTVVSLALASLIYYYVCLKGKAGDWGDGLKSAYFQLALRSLRSLGANQVHPKNWYPIPLIFCRPWGKLPENVPCHPKLADFANCMKKKGRGMSIFVSILDGDYHECAEDAKTACKQLATYIDYKRCEGVAEIVVAPNMSEGFRGIVQTMGLGNLKPNIVVMRYPEIWRRENLTEIPATFVGIINDCIVANKAVVIVKGLDEWPNEYQRQYGTIDLYWIVRDGGlmlllsqlllTKESFESCKIQVFCIAEEDSDAEVLKADVKKFLYDLRMQAEVIVISMKSWDEQTENGPQQDESLDAFIAAQHRIKNYLAEMKAEAQKSGTPLMADGKPVVVNEQQVEKFLYTTLKLNSTILRHSRMAAVVLVSLppppINHPAYCYMEYMDLLVENVPRLLIVRGYRRDVVTLFT

*********************************************************************************LELFGFDSLVNILGLRSM*******************************VKLGTLMGVFIPCLQNILGIIYYIRFTWIVGMGGIGDSLLVVAFCGSCTFLTSISLSAIATNGAMKGGGPYYLIGRALGPEVGVSIGLCFFLGNAVAGAMYVLGAVETFLKAVPAAGMFRETITKVNGTAT******PSLHDLQIYGIIVTIILCFIVFGGVKIINRVAPTFLIPVLLSIFCIFVGILLASKDDPAPGITGLKLKTFKDNWFSDYQKTNNAGIPDPNGAVDWSFNALVGLFFPAVTGIMAGS**********RSIPIGTLAATLTTTALYVISVLLFGAAATREELLTDRLLTATIAWPFPAVIHIGIILSTLGAALQSLTGAPRLLAAIANDDILPVLNYFKVAEGREPHIATFFTAFICIGCVIIGNLDLITPTITMFFLLCYSGVNLSCFLLDLLDAPSWRPRWKFHHWSLSLLGSVFCIVIMFLISWSFTVVSLALASLIYYYVCLKGKAGDWGDGLKSAYFQLALRSLRSLGANQVHPKNWYPIPLIFCRPWGKLPENVPCHPKLADFANCMKKKGRGMSIFVSILDGDYHECAEDAKTACKQLATYIDYKRCEGVAEIVVAPNMSEGFRGIVQTMGLGNLKPNIVVMRYPEIWRRENLTEIPATFVGIINDCIVANKAVVIVKGLDEWPNEYQRQYGTIDLYWIVRDGGLMLLLSQLLLTKESFESCKIQVFCIAEEDSDAEVLKADVKKFLYDLRMQAEVIVISMKSW***************AFIAAQHRIKNYLA******************PVVVNEQQVEKFLYTTLKLNSTILRHSRMAAVVLVSLPPPPINHPAYCYMEYMDLLVENVPRLLIVRGYRRDVVTLF*

*************************************************************************************************************************************GTLMGVFIPCLQNILGIIYYIRFTWIVGMGGIGDSLLVVAFCGSCTFLTSISLSAIATNGAMKGGGPYYLIGRALGPEVGVSIGLCFFLGNAVAGAMYVLGAVETFLKAVPAAGMFRETITKVNGTATPEPIQSPSLHDLQIYGIIVTIILCFIVFGGVKIINRVAPTFLIPVLLSIFCIFVGILLASKDDPAPGITGLKLKTFKDNWFSDYQKTNNAGIPDPNGAVDWSFNALVGLFFPAVTGIMAGSNRSASLKDTQRSIPIGTLAATLTTTALYVISVLLFGAAATREELLTDRLLTATIAWPFPAVIHIGIILSTLGAALQSLTGAPRLLAAIANDDILPVLNYFKVAEGREPHIATFFTAFICIGCVIIGNLDLITPTITMFFLLCYSGVNLSCFLLDLLDAPSWRPRWKFHHWSLSLLGSVFCIVIMFLISWSFTVVSLALASLIYYYVCLKGKAGDWGDGLKSAYFQLALRSLRSLGANQVHPKNWYPIPLIFCRPWGKLPENVPCHPKLADFANCMKKKGRGMSIFVSILDGDYHECAE***TACKQLATYIDYKRCEGVAEIVVAPNMSEGFRGIVQTMGLGNLKPNIVVMR*************PATFVGIINDCIVANKAVVIVKGLDEWPNEYQRQYGTIDLYWIVRDGGLMLLLSQLLLTKES*ESCKIQ*******************KFLYDLRMQAEVIVISM*******************FIAAQHRIKNYLAEMKAEAQK**********PVVVNEQQVEKF*YT*************MAAVVLVSLPPPPINHPAYCYMEYMDLLVENVPRLLIVRGYRRDVVTLFT

*************RAQLGRKYRPVVAHDRAVLQMS*************NVKIDGKENIGSDAREGSAPDNLRVNGSERDSKLELFGFDSLVNILGLRSMTGEQIV***********EDAPITYGPPKPSDVKLGTLMGVFIPCLQNILGIIYYIRFTWIVGMGGIGDSLLVVAFCGSCTFLTSISLSAIATNGAMKGGGPYYLIGRALGPEVGVSIGLCFFLGNAVAGAMYVLGAVETFLKAVPAAGMFRETITKVNGTATPEPIQSPSLHDLQIYGIIVTIILCFIVFGGVKIINRVAPTFLIPVLLSIFCIFVGILLASKDDPAPGITGLKLKTFKDNWFSDYQKTNNAGIPDPNGAVDWSFNALVGLFFPAVTGIMAGSNRSASLKDTQRSIPIGTLAATLTTTALYVISVLLFGAAATREELLTDRLLTATIAWPFPAVIHIGIILSTLGAALQSLTGAPRLLAAIANDDILPVLNYFKVAEGREPHIATFFTAFICIGCVIIGNLDLITPTITMFFLLCYSGVNLSCFLLDLLDAPSWRPRWKFHHWSLSLLGSVFCIVIMFLISWSFTVVSLALASLIYYYVCLKGKAGDWGDGLKSAYFQLALRSLRSLGANQVHPKNWYPIPLIFCRPWGKLPENVPCHPKLADFANCMKKKGRGMSIFVSILDGDYHECAEDAKTACKQLATYIDYKRCEGVAEIVVAPNMSEGFRGIVQTMGLGNLKPNIVVMRYPEIWRRENLTEIPATFVGIINDCIVANKAVVIVKGLDEWPNEYQRQYGTIDLYWIVRDGGLMLLLSQLLLTKESFESCKIQVFCIAEEDSDAEVLKADVKKFLYDLRMQAEVIVISMKSW**********DESLDAFIAAQHRIKNYLAEMKAEAQKSGTPLMADGKPVVVNEQQVEKFLYTTLKLNSTILRHSRMAAVVLVSLPPPPINHPAYCYMEYMDLLVENVPRLLIVRGYRRDVVTLFT

*******************KYRPVVAHDRAVLQ******************************************SERDSKLELFGFDSLVNILGLRSMTGEQI*************************DVKLGTLMGVFIPCLQNILGIIYYIRFTWIVGMGGIGDSLLVVAFCGSCTFLTSISLSAIATNGAMKGGGPYYLIGRALGPEVGVSIGLCFFLGNAVAGAMYVLGAVETFLKAVPAAGMFRETITKVNGTATPEPIQSPSLHDLQIYGIIVTIILCFIVFGGVKIINRVAPTFLIPVLLSIFCIFVGILLASKDDPAPGITGLKLKTFKDNWFSDYQKTNNAGIPDPNGAVDWSFNALVGLFFPAVTGIMAGSNRSASLKDTQRSIPIGTLAATLTTTALYVISVLLFGAAATREELLTDRLLTATIAWPFPAVIHIGIILSTLGAALQSLTGAPRLLAAIANDDILPVLNYFKVAEGREPHIATFFTAFICIGCVIIGNLDLITPTITMFFLLCYSGVNLSCFLLDLLDAPSWRPRWKFHHWSLSLLGSVFCIVIMFLISWSFTVVSLALASLIYYYVCLKGKAGDWGDGLKSAYFQLALRSLRSLGANQVHPKNWYPIPLIFCRPWGKLPENVPCHPKLADFANCMKKKGRGMSIFVSILDGDYHECAEDAKTACKQLATYIDYKRCEGVAEIVVAPNMSEGFRGIVQTMGLGNLKPNIVVMRYPEIWRRENLTEIPATFVGIINDCIVANKAVVIVKGLDEWPNEYQRQYGTIDLYWIVRDGGLMLLLSQLLLTKESFESCKIQVFCIAEEDSDAEVLKADVKKFLYDLRMQAEVIVISMKSWDEQTENGPQQDESLDAFIAAQHRIKNYLAEMKAEAQ***TPLMADGKPVVVNEQQVEKFLYTTLKLNSTILRHSRMAAVVLVSLPPPPINHPAYCYMEYMDLLVENVPRLLIVRGYRRDVVTLFT

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		980	2.2.26 [Sep-21-2011]
Q2UVJ5		975	Cation-chloride cotranspo	yes	no	0.970	0.975	0.824	0.0
Q6Z0E2		989	Cation-chloride cotranspo	yes	no	0.983	0.974	0.779	0.0
Q657W3		994	Cation-chloride cotranspo	yes	no	0.975	0.961	0.765	0.0
Q9JIS8		1085	Solute carrier family 12	yes	no	0.851	0.768	0.338	1e-152
Q28677		1085	Solute carrier family 12	no	no	0.852	0.769	0.336	1e-151
Q9UP95		1085	Solute carrier family 12	yes	no	0.884	0.799	0.330	1e-151
Q63632		1085	Solute carrier family 12	yes	no	0.851	0.768	0.337	1e-150
Q7YRU6		1106	Solute carrier family 12	no	no	0.927	0.821	0.307	1e-133
Q924N4		1150	Solute carrier family 12	no	no	0.621	0.529	0.359	1e-115
Q9UHW9		1150	Solute carrier family 12	no	no	0.622	0.530	0.358	1e-115

>sp\|Q2UVJ5\|CCC1_ARATH Cation-chloride cotransporter 1 OS=Arabidopsis thaliana GN=CCC1 PE=1 SV=1	Back alignment and function desciption

 Score = 1594 bits (4127), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 794/963 (82%), Positives = 876/963 (90%), Gaps = 12/963 (1%)

Query: 18  GRKYRPVVAHDRAVLQMSSMDPGSTSDSSPKNVKIDGKENIGSDAREGSAPDNLRVNGSE 77
           G KYRPVVAHDRAV++MSS+D   +S S+ KN+K+    ++G+  R    P++  VNG +
Sbjct: 25  GSKYRPVVAHDRAVVEMSSID-PGSSSSTLKNIKVVAPGDVGAGVR---GPED-GVNGHQ 79

Query: 78  RDSKLELFGFDSLVNILGLRSMTGEQIVAPSSPREGRDGEDAPITYGPPKPSDVKLGTLM 137
           ++SKLELFGFDSLVNILGL+SMTGEQI APSSPR   DGED  IT G PKP  +K+GT+M
Sbjct: 80  KESKLELFGFDSLVNILGLKSMTGEQIQAPSSPR---DGEDISITQGHPKPPALKMGTMM 136

Query: 138 GVFIPCLQNILGIIYYIRFTWIVGMGGIGDSLLVVAFCGSCTFLTSISLSAIATNGAMKG 197
           GVF+PCLQNILGIIYYIRFTWIVGM GIG  L++V  CG CTFLT+ISLSAIATNGAMKG
Sbjct: 137 GVFVPCLQNILGIIYYIRFTWIVGMAGIGQGLVLVFLCGLCTFLTTISLSAIATNGAMKG 196

Query: 198 GGPYYLIGRALGPEVGVSIGLCFFLGNAVAGAMYVLGAVETFLKAVPAAGMFRETITKVN 257
           GGPYYLIGRALGPEVG+SIGLCFFLGNAVAGA+YVLGAVETFLKA PAAG+FRETITKVN
Sbjct: 197 GGPYYLIGRALGPEVGISIGLCFFLGNAVAGALYVLGAVETFLKAFPAAGIFRETITKVN 256

Query: 258 GTATPEPIQSPSLHDLQIYGIIVTIILCFIVFGGVKIINRVAPTFLIPVLLSIFCIFVGI 317
           GTA  E IQSP+ HDLQ+YGI+VTI+LCFIVFGGVK+INRVAP FL+PVLLSIFCIF+GI
Sbjct: 257 GTAVSESIQSPNSHDLQVYGIVVTILLCFIVFGGVKMINRVAPAFLVPVLLSIFCIFIGI 316

Query: 318 LLASKDDPAPGITGLKLKTFKDNWFSDYQKTNNAGIPDPNGAVDWSFNALVGLFFPAVTG 377
            LA  DDP  GITGL+LK+FKDNW S YQ TN+AGIPDP G   WSFN LVGLFFPAVTG
Sbjct: 317 FLAKTDDPDNGITGLRLKSFKDNWGSAYQMTNDAGIPDPTGGTYWSFNELVGLFFPAVTG 376

Query: 378 IMAGSNRSASLKDTQRSIPIGTLAATLTTTALYVISVLLFGAAATREELLTDRLLTATIA 437
           IMAGSNRSASLKDTQ+SIP+GTLAATLTTT+LY+ISVL FGA ATR++LLTDRLLTATIA
Sbjct: 377 IMAGSNRSASLKDTQKSIPVGTLAATLTTTSLYLISVLFFGAVATRDKLLTDRLLTATIA 436

Query: 438 WPFPAVIHIGIILSTLGAALQSLTGAPRLLAAIANDDILPVLNYFKVAEGREPHIATFFT 497
           WPFPA++H+GIILSTLGAALQSLTGAPRLLAAIANDDILP+LNYFKVA+  EPHIAT FT
Sbjct: 437 WPFPAIVHVGIILSTLGAALQSLTGAPRLLAAIANDDILPILNYFKVADTSEPHIATLFT 496

Query: 498 AFICIGCVIIGNLDLITPTITMFFLLCYSGVNLSCFLLDLLDAPSWRPRWKFHHWSLSLL 557
           AFICIGCV+IGNLDLITPT+TMF+LLCYSGVNLSCFLLDLLDAPSWRPRWK+HHWSLS +
Sbjct: 497 AFICIGCVVIGNLDLITPTVTMFYLLCYSGVNLSCFLLDLLDAPSWRPRWKYHHWSLSFV 556

Query: 558 GSVFCIVIMFLISWSFTVVSLALASLIYYYVCLKGKAGDWGDGLKSAYFQLALRSLRSLG 617
           G+  CIVIMFLISWSFTVV++ALASLIY YV LKGKAGDWGDG KSAYFQLALRSLRSLG
Sbjct: 557 GASLCIVIMFLISWSFTVVAIALASLIYKYVGLKGKAGDWGDGFKSAYFQLALRSLRSLG 616

Query: 618 ANQVHPKNWYPIPLIFCRPWGKLPENVPCHPKLADFANCMKKKGRGMSIFVSILDGDYHE 677
           ANQVHPKNWYPIPL+FCRPWG+LPENVPCHPKLADFANCMKKKGRGMSIFVSILDGDY+E
Sbjct: 617 ANQVHPKNWYPIPLVFCRPWGQLPENVPCHPKLADFANCMKKKGRGMSIFVSILDGDYYE 676

Query: 678 CAEDAKTACKQLATYIDYKRCEGVAEIVVAPNMSEGFRGIVQTMGLGNLKPNIVVMRYPE 737
           CAE+AK ACKQLATYI+YKRCEGVAEIVVAPNM+EGFRGI+QTMGLGNLKPNIVVMRYPE
Sbjct: 677 CAEEAKEACKQLATYIEYKRCEGVAEIVVAPNMTEGFRGIIQTMGLGNLKPNIVVMRYPE 736

Query: 738 IWRRENLTEIPATFVGIINDCIVANKAVVIVKGLDEWPNEYQRQYGTIDLYWIVRDGGLM 797
           IWRRENLTEIP+TFVGIINDCI ANKAVVI+KGLDEWPNEYQRQYGTIDLYWIVRDGGLM
Sbjct: 737 IWRRENLTEIPSTFVGIINDCITANKAVVIIKGLDEWPNEYQRQYGTIDLYWIVRDGGLM 796

Query: 798 LLLSQLLLTKESFESCKIQVFCIAEEDSDAEVLKADVKKFLYDLRMQAEVIVISMKSWDE 857
           LLLSQLLLTKESFESCKIQ+FCIAEEDSDAE LKADVKKFLYDLRM AEVIV++MKSWD 
Sbjct: 797 LLLSQLLLTKESFESCKIQLFCIAEEDSDAEALKADVKKFLYDLRMHAEVIVVTMKSWDI 856

Query: 858 QTENGPQQDESLDAFIAAQHRIKNYLAEMKAEAQKSGTPLMADGKPVVVNEQQVEKFLYT 917
           ++E G  Q++SL+AF AAQ RI +YL E+K   ++   PL+A+GKP+VVNEQQVEKFLYT
Sbjct: 857 RSE-GNSQEDSLEAFDAAQRRISDYLGEIK---RQGSNPLLANGKPMVVNEQQVEKFLYT 912

Query: 918 TLKLNSTILRHSRMAAVVLVSLPPPPINHPAYCYMEYMDLLVENVPRLLIVRGYRRDVVT 977
            LKLNSTIL +SRMAAVVLVSLPPPP+NHPAY YMEYMDLLVENVPR+LIVRGY RDVVT
Sbjct: 913 MLKLNSTILSYSRMAAVVLVSLPPPPLNHPAYFYMEYMDLLVENVPRMLIVRGYHRDVVT 972

Query: 978 LFT 980
           LFT
Sbjct: 973 LFT 975

Cation/chloride cotransporter that mediates potassium-chloride and sodium-chloride cotransports. Involved in plant development and Cl(-) homeostasis. May be involved in long distance Cl(-) transport. Does not function as an H(+)-dependent cotransporter.
Arabidopsis thaliana (taxid: 3702)

>sp\|Q6Z0E2\|CCC1_ORYSJ Cation-chloride cotransporter 1 OS=Oryza sativa subsp. japonica GN=CCC1 PE=2 SV=1	Back alignment and function description

>sp\|Q657W3\|CCC2_ORYSJ Cation-chloride cotransporter 2 OS=Oryza sativa subsp. japonica GN=CCC2 PE=2 SV=2	Back alignment and function description

>sp\|Q9JIS8\|S12A4_MOUSE Solute carrier family 12 member 4 OS=Mus musculus GN=Slc12a4 PE=1 SV=2	Back alignment and function description

>sp\|Q28677\|S12A4_RABIT Solute carrier family 12 member 4 OS=Oryctolagus cuniculus GN=SLC12A4 PE=1 SV=1	Back alignment and function description

>sp\|Q9UP95\|S12A4_HUMAN Solute carrier family 12 member 4 OS=Homo sapiens GN=SLC12A4 PE=1 SV=2	Back alignment and function description

>sp\|Q63632\|S12A4_RAT Solute carrier family 12 member 4 OS=Rattus norvegicus GN=Slc12a4 PE=1 SV=1	Back alignment and function description

>sp\|Q7YRU6\|S12A7_RABIT Solute carrier family 12 member 7 OS=Oryctolagus cuniculus GN=SLC12A7 PE=1 SV=1	Back alignment and function description

>sp\|Q924N4\|S12A6_MOUSE Solute carrier family 12 member 6 OS=Mus musculus GN=Slc12a6 PE=1 SV=2	Back alignment and function description

>sp\|Q9UHW9\|S12A6_HUMAN Solute carrier family 12 member 6 OS=Homo sapiens GN=SLC12A6 PE=1 SV=2	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		980
284449849		980	cation chloride cotransporter [Citrus cl	1.0	1.0	0.998	0.0
294715574		980	cation-chloride cotransporter [Citrus tr	1.0	1.0	0.996	0.0
359483927		976	PREDICTED: cation-chloride cotransporter	0.995	1.0	0.852	0.0
255571328		976	cation:chloride symporter, putative [Ric	0.990	0.994	0.861	0.0
224116618		968	cation-chloride cotransporter [Populus t	0.982	0.994	0.834	0.0
356530533		994	PREDICTED: cation-chloride cotransporter	0.983	0.969	0.819	0.0
356556503		992	PREDICTED: cation-chloride cotransporter	0.995	0.983	0.808	0.0
357450457		990	Solute carrier family 12 member [Medicag	0.993	0.983	0.806	0.0
190411131		988	cation-chloride cotransporter-like prote	0.994	0.986	0.810	0.0
30691713		975	cation-chloride co-transporter 1 [Arabid	0.970	0.975	0.824	0.0

>gi\|284449849\|emb\|CBJ19439.1\| cation chloride cotransporter [Citrus clementina]	Back alignment and taxonomy information

 Score = 2011 bits (5209), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 979/980 (99%), Positives = 980/980 (100%)

Query: 1   MDNEDIEGGEEEFRAQLGRKYRPVVAHDRAVLQMSSMDPGSTSDSSPKNVKIDGKENIGS 60
           MDNEDIEGGEEEFRAQLGRKYRPVVAHDRAVLQMSSMDPGSTSDSSPKNVKIDGKEN+GS
Sbjct: 1   MDNEDIEGGEEEFRAQLGRKYRPVVAHDRAVLQMSSMDPGSTSDSSPKNVKIDGKENMGS 60

Query: 61  DAREGSAPDNLRVNGSERDSKLELFGFDSLVNILGLRSMTGEQIVAPSSPREGRDGEDAP 120
           DAREGSAPDNLRVNGSERDSKLELFGFDSLVNILGLRSMTGEQIVAPSSPREGRDGEDAP
Sbjct: 61  DAREGSAPDNLRVNGSERDSKLELFGFDSLVNILGLRSMTGEQIVAPSSPREGRDGEDAP 120

Query: 121 ITYGPPKPSDVKLGTLMGVFIPCLQNILGIIYYIRFTWIVGMGGIGDSLLVVAFCGSCTF 180
           ITYGPPKPSDVKLGTLMGVFIPCLQNILGIIYYIRFTWIVGMGGIGDSLLVVAFCGSCTF
Sbjct: 121 ITYGPPKPSDVKLGTLMGVFIPCLQNILGIIYYIRFTWIVGMGGIGDSLLVVAFCGSCTF 180

Query: 181 LTSISLSAIATNGAMKGGGPYYLIGRALGPEVGVSIGLCFFLGNAVAGAMYVLGAVETFL 240
           LTSISLSAIATNGAMKGGGPYYLIGRALGPEVGVSIGLCFFLGNAVAGAMYVLGAVETFL
Sbjct: 181 LTSISLSAIATNGAMKGGGPYYLIGRALGPEVGVSIGLCFFLGNAVAGAMYVLGAVETFL 240

Query: 241 KAVPAAGMFRETITKVNGTATPEPIQSPSLHDLQIYGIIVTIILCFIVFGGVKIINRVAP 300
           KAVPAAGMFRETITKVNGTATPEPIQSPSLHDLQIYGIIVTIILCFIVFGGVKIINRVAP
Sbjct: 241 KAVPAAGMFRETITKVNGTATPEPIQSPSLHDLQIYGIIVTIILCFIVFGGVKIINRVAP 300

Query: 301 TFLIPVLLSIFCIFVGILLASKDDPAPGITGLKLKTFKDNWFSDYQKTNNAGIPDPNGAV 360
           TFLIPVLLSIFCIFVGILLASKDDPAPGITGLKLKTFKDNWFSDYQKTNNAGIPDPNGAV
Sbjct: 301 TFLIPVLLSIFCIFVGILLASKDDPAPGITGLKLKTFKDNWFSDYQKTNNAGIPDPNGAV 360

Query: 361 DWSFNALVGLFFPAVTGIMAGSNRSASLKDTQRSIPIGTLAATLTTTALYVISVLLFGAA 420
           DWSFNALVGLFFPAVTGIMAGSNRSASLKDTQRSIPIGTLAATLTTTALYVISVLLFGAA
Sbjct: 361 DWSFNALVGLFFPAVTGIMAGSNRSASLKDTQRSIPIGTLAATLTTTALYVISVLLFGAA 420

Query: 421 ATREELLTDRLLTATIAWPFPAVIHIGIILSTLGAALQSLTGAPRLLAAIANDDILPVLN 480
           ATREELLTDRLLTATIAWPFPAVIHIGIILSTLGAALQSLTGAPRLLAAIANDDILPVLN
Sbjct: 421 ATREELLTDRLLTATIAWPFPAVIHIGIILSTLGAALQSLTGAPRLLAAIANDDILPVLN 480

Query: 481 YFKVAEGREPHIATFFTAFICIGCVIIGNLDLITPTITMFFLLCYSGVNLSCFLLDLLDA 540
           YFKVAEGREPHIATFFTAFICIGCVIIGNLDLITPTITMFFLLCYSGVNLSCFLLDLLDA
Sbjct: 481 YFKVAEGREPHIATFFTAFICIGCVIIGNLDLITPTITMFFLLCYSGVNLSCFLLDLLDA 540

Query: 541 PSWRPRWKFHHWSLSLLGSVFCIVIMFLISWSFTVVSLALASLIYYYVCLKGKAGDWGDG 600
           PSWRPRWKFHHWSLSLLGSVFCIVIMFLISWSFTVVSLALASLIYYYVCLKGKAGDWGDG
Sbjct: 541 PSWRPRWKFHHWSLSLLGSVFCIVIMFLISWSFTVVSLALASLIYYYVCLKGKAGDWGDG 600

Query: 601 LKSAYFQLALRSLRSLGANQVHPKNWYPIPLIFCRPWGKLPENVPCHPKLADFANCMKKK 660
           LKSAYFQLALRSLRSLGANQVHPKNWYPIPLIFCRPWGKLPENVPCHPKLADFANCMKKK
Sbjct: 601 LKSAYFQLALRSLRSLGANQVHPKNWYPIPLIFCRPWGKLPENVPCHPKLADFANCMKKK 660

Query: 661 GRGMSIFVSILDGDYHECAEDAKTACKQLATYIDYKRCEGVAEIVVAPNMSEGFRGIVQT 720
           GRGMSIFVSILDGDYHECAEDAKTACKQLATYIDYKRCEGVAEIVVAPNMSEGFRGIVQT
Sbjct: 661 GRGMSIFVSILDGDYHECAEDAKTACKQLATYIDYKRCEGVAEIVVAPNMSEGFRGIVQT 720

Query: 721 MGLGNLKPNIVVMRYPEIWRRENLTEIPATFVGIINDCIVANKAVVIVKGLDEWPNEYQR 780
           MGLGNLKPNIVVMRYPEIWRRENLTEIPATFVGIINDCIVANKAVVIVKGLDEWPNEYQR
Sbjct: 721 MGLGNLKPNIVVMRYPEIWRRENLTEIPATFVGIINDCIVANKAVVIVKGLDEWPNEYQR 780

Query: 781 QYGTIDLYWIVRDGGLMLLLSQLLLTKESFESCKIQVFCIAEEDSDAEVLKADVKKFLYD 840
           QYGTIDLYWIVRDGGLMLLLSQLLLTKESFESCKIQVFCIAEEDSDAEVLKADVKKFLYD
Sbjct: 781 QYGTIDLYWIVRDGGLMLLLSQLLLTKESFESCKIQVFCIAEEDSDAEVLKADVKKFLYD 840

Query: 841 LRMQAEVIVISMKSWDEQTENGPQQDESLDAFIAAQHRIKNYLAEMKAEAQKSGTPLMAD 900
           LRMQAEVIVISMKSWDEQTENGPQQDESLDAFIAAQHRIKNYLAEMKAEAQKSGTPLMAD
Sbjct: 841 LRMQAEVIVISMKSWDEQTENGPQQDESLDAFIAAQHRIKNYLAEMKAEAQKSGTPLMAD 900

Query: 901 GKPVVVNEQQVEKFLYTTLKLNSTILRHSRMAAVVLVSLPPPPINHPAYCYMEYMDLLVE 960
           GKPVVVNEQQVEKFLYTTLKLNSTILRHSRMAAVVLVSLPPPPINHPAYCYMEYMDLLVE
Sbjct: 901 GKPVVVNEQQVEKFLYTTLKLNSTILRHSRMAAVVLVSLPPPPINHPAYCYMEYMDLLVE 960

Query: 961 NVPRLLIVRGYRRDVVTLFT 980
           NVPRLLIVRGYRRDVVTLFT
Sbjct: 961 NVPRLLIVRGYRRDVVTLFT 980

Source: Citrus clementina

Species: Citrus clementina

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|294715574\|gb\|ADF30875.1\| cation-chloride cotransporter [Citrus trifoliata]	Back alignment and taxonomy information

>gi\|359483927\|ref\|XP_003633037.1\| PREDICTED: cation-chloride cotransporter 1 isoform 2 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|255571328\|ref\|XP_002526613.1\| cation:chloride symporter, putative [Ricinus communis] gi\|223534053\|gb\|EEF35772.1\| cation:chloride symporter, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|224116618\|ref\|XP_002317348.1\| cation-chloride cotransporter [Populus trichocarpa] gi\|222860413\|gb\|EEE97960.1\| cation-chloride cotransporter [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|356530533\|ref\|XP_003533835.1\| PREDICTED: cation-chloride cotransporter 1-like [Glycine max]	Back alignment and taxonomy information

>gi\|356556503\|ref\|XP_003546564.1\| PREDICTED: cation-chloride cotransporter 1-like [Glycine max]	Back alignment and taxonomy information

>gi\|357450457\|ref\|XP_003595505.1\| Solute carrier family 12 member [Medicago truncatula] gi\|146198492\|tpe\|CAJ38499.1\| TPA: cation chloride cotransporter [Medicago truncatula f. tricycla] gi\|355484553\|gb\|AES65756.1\| Solute carrier family 12 member [Medicago truncatula]	Back alignment and taxonomy information

>gi\|190411131\|gb\|ACE78321.1\| cation-chloride cotransporter-like protein [Lotus tenuis]	Back alignment and taxonomy information

>gi|30691713|ref|NP_174333.2| cation-chloride co-transporter 1 [Arabidopsis thaliana] gi|30691718|ref|NP_849731.1| cation-chloride co-transporter 1 [Arabidopsis thaliana] gi|30691724|ref|NP_849732.1| cation-chloride co-transporter 1 [Arabidopsis thaliana] gi|122209111|sp|Q2UVJ5.1|CCC1_ARATH RecName: Full=Cation-chloride cotransporter 1; Short=AtCCC1; AltName: Full=Protein HAPLESS 5 gi|83523648|emb|CAJ34849.1| cation chloride cotransporter [Arabidopsis thaliana] gi|110741532|dbj|BAE98715.1| putative cation-chloride co-transporter [Arabidopsis thaliana] gi|332193096|gb|AEE31217.1| cation-chloride co-transporter 1 [Arabidopsis thaliana] gi|332193097|gb|AEE31218.1| cation-chloride co-transporter 1 [Arabidopsis thaliana] gi|332193098|gb|AEE31219.1| cation-chloride co-transporter 1 [Arabidopsis thaliana]

Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		980
TAIR\|locus:2028170		975	CCC1 "cation-chloride co-trans	0.987	0.992	0.773	0.0
UNIPROTKB\|Q6Z0E2		989	CCC1 "Cation-chloride cotransp	0.991	0.982	0.743	0.0
ZFIN\|ZDB-GENE-090218-27		1095	slc12a4 "solute carrier family	0.498	0.446	0.375	4.7e-153
UNIPROTKB\|G3V6N7		1150	Slc12a6 "RCG27287, isoform CRA	0.498	0.425	0.382	7.6e-151
UNIPROTKB\|E1BZK3		1094	SLC12A4 "Uncharacterized prote	0.502	0.449	0.376	5.5e-149
ZFIN\|ZDB-GENE-091113-16		1119	si:dkeyp-106g6.1 "si:dkeyp-106	0.498	0.436	0.375	1.9e-148
UNIPROTKB\|Q9Y666		1083	SLC12A7 "Solute carrier family	0.495	0.448	0.368	3.8e-148
UNIPROTKB\|F1Q2J3		1151	SLC12A6 "Uncharacterized prote	0.498	0.424	0.380	1e-147
UNIPROTKB\|F1PKH1		1046	SLC12A7 "Uncharacterized prote	0.512	0.479	0.353	2.1e-147
UNIPROTKB\|F1PKH5		1064	SLC12A7 "Uncharacterized prote	0.512	0.471	0.353	2.1e-147

TAIR\|locus:2028170 CCC1 "cation-chloride co-transporter 1" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 3970 (1402.6 bits), Expect = 0., P = 0.
 Identities = 763/987 (77%), Positives = 842/987 (85%)

Query:     1 MDNEDIE----GGEEEFRA--QLG-RKYRPVVAHDRAVLQXXXXXXXXXXXXXXKNVKID 53
             MD+ DIE     GEEEFR+  +LG  KYRPVVAHDRAV++              KN+K+ 
Sbjct:     1 MDSGDIEEAGGNGEEEFRSGPRLGGSKYRPVVAHDRAVVEMSSIDPGSSSSTL-KNIKVV 59

Query:    54 GKENIGSDAREGSAPDNLRVNGSERDSKLELFGFDSLVNILGLRSMTGEQIVAPSSPREG 113
                ++G+  R    P++  VNG +++SKLELFGFDSLVNILGL+SMTGEQI APSSPR  
Sbjct:    60 APGDVGAGVR---GPED-GVNGHQKESKLELFGFDSLVNILGLKSMTGEQIQAPSSPR-- 113

Query:   114 RDGEDAPITYGPPKPSDVKLGTLMGVFIPCLQNILGIIYYIRFTWIVGMGGIGDSLLVVA 173
              DGED  IT G PKP  +K+GT+MGVF+PCLQNILGIIYYIRFTWIVGM GIG  L++V 
Sbjct:   114 -DGEDISITQGHPKPPALKMGTMMGVFVPCLQNILGIIYYIRFTWIVGMAGIGQGLVLVF 172

Query:   174 FCGSCTFLTSISLSAIATNGAMKGGGPYYLIGRALGPEVGVSIGLCFFLGNAVAGAMYVL 233
              CG CTFLT+ISLSAIATNGAMKGGGPYYLIGRALGPEVG+SIGLCFFLGNAVAGA+YVL
Sbjct:   173 LCGLCTFLTTISLSAIATNGAMKGGGPYYLIGRALGPEVGISIGLCFFLGNAVAGALYVL 232

Query:   234 GAVETFLKAVPAAGMFRETITKVNGTATPEPIQSPSLHDLQIYGIIVTIILCFIVFGGVK 293
             GAVETFLKA PAAG+FRETITKVNGTA  E IQSP+ HDLQ+YGI+VTI+LCFIVFGGVK
Sbjct:   233 GAVETFLKAFPAAGIFRETITKVNGTAVSESIQSPNSHDLQVYGIVVTILLCFIVFGGVK 292

Query:   294 IINRVAPTFLIPVLLSIFCIFVGILLASKDDPAPGITGLKLKTFKDNWFSDYQKTNNAGI 353
             +INRVAP FL+PVLLSIFCIF+GI LA  DDP  GITGL+LK+FKDNW S YQ TN+AGI
Sbjct:   293 MINRVAPAFLVPVLLSIFCIFIGIFLAKTDDPDNGITGLRLKSFKDNWGSAYQMTNDAGI 352

Query:   354 PDPNGAVDWSFNALVGLFFPAVTGIMAGSNRSASLKDTQRSIPIGXXXXXXXXXXXYVIS 413
             PDP G   WSFN LVGLFFPAVTGIMAGSNRSASLKDTQ+SIP+G           Y+IS
Sbjct:   353 PDPTGGTYWSFNELVGLFFPAVTGIMAGSNRSASLKDTQKSIPVGTLAATLTTTSLYLIS 412

Query:   414 VLLFGAAXXXXXXXXXXXXXXXIAWPFPAVIHIGIILSTLGAALQSLTGAPRLLAAIAND 473
             VL FGA                IAWPFPA++H+GIILSTLGAALQSLTGAPRLLAAIAND
Sbjct:   413 VLFFGAVATRDKLLTDRLLTATIAWPFPAIVHVGIILSTLGAALQSLTGAPRLLAAIAND 472

Query:   474 DILPVLNYFKVAEGREPHIATFFTAFICIGCVIIGNLDLITPTITMFFLLCYSGVNLSCF 533
             DILP+LNYFKVA+  EPHIAT FTAFICIGCV+IGNLDLITPT+TMF+LLCYSGVNLSCF
Sbjct:   473 DILPILNYFKVADTSEPHIATLFTAFICIGCVVIGNLDLITPTVTMFYLLCYSGVNLSCF 532

Query:   534 LLDLLDAPSWRPRWKFHHWSLSLLGSVFCIVIMFLISWSFTVVSLALASLIYYYVCLKGK 593
             LLDLLDAPSWRPRWK+HHWSLS +G+  CIVIMFLISWSFTVV++ALASLIY YV LKGK
Sbjct:   533 LLDLLDAPSWRPRWKYHHWSLSFVGASLCIVIMFLISWSFTVVAIALASLIYKYVGLKGK 592

Query:   594 AGDWGDGLKSAYFQLALRSLRSLGANQVHPKNWYPIPLIFCRPWGKLPENVPCHPKLADF 653
             AGDWGDG KSAYFQLALRSLRSLGANQVHPKNWYPIPL+FCRPWG+LPENVPCHPKLADF
Sbjct:   593 AGDWGDGFKSAYFQLALRSLRSLGANQVHPKNWYPIPLVFCRPWGQLPENVPCHPKLADF 652

Query:   654 ANCMKKKGRGMSIFVSILDGDYHECAEDAKTACKQLATYIDYKRCEGVAEIVVAPNMSEG 713
             ANCMKKKGRGMSIFVSILDGDY+ECAE+AK ACKQLATYI+YKRCEGVAEIVVAPNM+EG
Sbjct:   653 ANCMKKKGRGMSIFVSILDGDYYECAEEAKEACKQLATYIEYKRCEGVAEIVVAPNMTEG 712

Query:   714 FRGIVQTMGLGNLKPNIVVMRYPEIWRRENLTEIPATFVGIINDCIVANKAVVIVKGLDE 773
             FRGI+QTMGLGNLKPNIVVMRYPEIWRRENLTEIP+TFVGIINDCI ANKAVVI+KGLDE
Sbjct:   713 FRGIIQTMGLGNLKPNIVVMRYPEIWRRENLTEIPSTFVGIINDCITANKAVVIIKGLDE 772

Query:   774 WPNEYQRQYGTIDLYWIVRDGGXXXXXXXXXXTKESFESCKIQVFCIAEEDSDAEVLKAD 833
             WPNEYQRQYGTIDLYWIVRDGG          TKESFESCKIQ+FCIAEEDSDAE LKAD
Sbjct:   773 WPNEYQRQYGTIDLYWIVRDGGLMLLLSQLLLTKESFESCKIQLFCIAEEDSDAEALKAD 832

Query:   834 VKKFLYDLRMQAEVIVISMKSWDEQTENGPQQDESLDAFIAAQHRIKNYLAEMKAEAQKS 893
             VKKFLYDLRM AEVIV++MKSWD ++E G  Q++SL+AF AAQ RI +YL E+K   ++ 
Sbjct:   833 VKKFLYDLRMHAEVIVVTMKSWDIRSE-GNSQEDSLEAFDAAQRRISDYLGEIK---RQG 888

Query:   894 GTPLMADGKPVVVNEQQVEKFLYTTLKLNSTILRHSRMAAVVLVSLXXXXINHPAYCYME 953
               PL+A+GKP+VVNEQQVEKFLYT LKLNSTIL +SRMAAVVLVSL    +NHPAY YME
Sbjct:   889 SNPLLANGKPMVVNEQQVEKFLYTMLKLNSTILSYSRMAAVVLVSLPPPPLNHPAYFYME 948

Query:   954 YMDLLVENVPRLLIVRGYRRDVVTLFT 980
             YMDLLVENVPR+LIVRGY RDVVTLFT
Sbjct:   949 YMDLLVENVPRMLIVRGYHRDVVTLFT 975

GO:0006810 "transport" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

GO:0006812 "cation transport" evidence=ISS

GO:0015377 "cation:chloride symporter activity" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0008511 "sodium:potassium:chloride symporter activity" evidence=IDA

GO:0005768 "endosome" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0005802 "trans-Golgi network" evidence=IDA

UNIPROTKB\|Q6Z0E2 CCC1 "Cation-chloride cotransporter 1" [Oryza sativa Japonica Group (taxid:39947)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-090218-27 slc12a4 "solute carrier family 12 (potassium/chloride transporters), member 4" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

UNIPROTKB\|G3V6N7 Slc12a6 "RCG27287, isoform CRA_a" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

UNIPROTKB\|E1BZK3 SLC12A4 "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-091113-16 si:dkeyp-106g6.1 "si:dkeyp-106g6.1" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

UNIPROTKB\|Q9Y666 SLC12A7 "Solute carrier family 12 member 7" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|F1Q2J3 SLC12A6 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|F1PKH1 SLC12A7 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|F1PKH5 SLC12A7 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q6Z0E2	CCC1_ORYSJ	No assigned EC number	0.7791	0.9836	0.9747	yes	no
Q2UVJ5	CCC1_ARATH	No assigned EC number	0.8245	0.9704	0.9753	yes	no
Q657W3	CCC2_ORYSJ	No assigned EC number	0.7653	0.9755	0.9617	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		980
TIGR00930		953	TIGR00930, 2a30, K-Cl cotransporter	0.0
pfam00324		473	pfam00324, AA_permease, Amino acid permease	8e-46
COG0531		466	COG0531, PotE, Amino acid transporters [Amino acid	1e-24
pfam13520		425	pfam13520, AA_permease_2, Amino acid permease	4e-15
TIGR00909		429	TIGR00909, 2A0306, amino acid transporter	4e-12
TIGR00911		501	TIGR00911, 2A0308, L-type amino acid transporter	8e-06
TIGR00905		473	TIGR00905, 2A0302, transporter, basic amino acid/p	3e-04
TIGR00907		482	TIGR00907, 2A0304, amino acid permease (GABA perme	0.001
cd10326		477	cd10326, SLC5sbd_NIS-like, Na(+)/iodide (NIS) and	0.003

>gnl\|CDD\|233194 TIGR00930, 2a30, K-Cl cotransporter	Back alignment and domain information

 Score = 1177 bits (3046), Expect = 0.0
 Identities = 366/1004 (36%), Positives = 522/1004 (51%), Gaps = 124/1004 (12%)

Query: 50  VKIDGKENIGSDAREGSAPDNLRVNGSERDSKLELFGFDSLVNILGLRSMTGEQIVAPSS 109
             +D    I             + N    +   +L   D +V++LG  +           
Sbjct: 1   NTVDAVPRIEHYRNSEG-QGGPKRNRPSLEELHDLL--DKVVSLLGPLADYTNNGQGMK- 56

Query: 110 PREGRDGEDAPITYGPPKPSDVKLGTLMGVFIPCLQNILGIIYYIRFTWIVGMGGIGDSL 169
             E  + EDA  T   P    VK G +MGV +PCL NI G+I ++R +WIVG  GIG SL
Sbjct: 57  --EHEEAEDAEGTKEKPPAGAVKFGWVMGVLVPCLLNIWGVILFLRLSWIVGQAGIGLSL 114

Query: 170 LVVAFCGSCTFLTSISLSAIATNGAMKGGGPYYLIGRALGPEVGVSIGLCFFLGNAVAGA 229
           L++  C   T +T +S+SAIATNG +KGGG YYLI R+LGPE G SIGL F   NAVA A
Sbjct: 115 LIILLCCCVTTITGLSMSAIATNGVVKGGGAYYLISRSLGPEFGGSIGLIFAFANAVAVA 174

Query: 230 MYVLGAVETFLKAVPAAGMFRETITKVNGTATPEPIQSPSLHDLQIYGIIVTIILCFIVF 289
           MYV+G  ET L       + RE     NG      I    ++D++IYG +  ++L  I F
Sbjct: 175 MYVVGFAETVLD------LLRE-----NG----SKIMVDPINDIRIYGTVTVVVLLGISF 219

Query: 290 GGVKIINRVAPTFLIPVLLSIFCIFVGILLASKDDPAPGITGLKLKTFKDNWFSDYQKTN 349
            G++  N+    FL+ VLLSI  IFVG ++ + D PA G  GL  + F +N         
Sbjct: 220 AGMEWENKAQVLFLVIVLLSILNIFVGTIIPAFDKPAKGFFGLGNEIFSEN--------F 271

Query: 350 NAGIPDPNGAVDWSFNALVGLFFPAVTGIMAGSNRSASLKDTQRSIPIGTLAATLTTTAL 409
             GIP P G     F +L G+FFP+VTGI+AG+N S  LKD Q++IP GTL A LTTT +
Sbjct: 272 IPGIPGPEG----GFFSLFGIFFPSVTGILAGANISGDLKDPQKAIPKGTLLAILTTTVV 327

Query: 410 YVISVLLFGAAATREEL----------------------------LTDRLLTATIAWPFP 441
           Y+ SV+LFGA   R+                              L + L   ++  PFP
Sbjct: 328 YLGSVVLFGACVVRDATGDKNDTLVTNCTSAACFSECAHNTCSYGLMNNLQVMSLVSPFP 387

Query: 442 AVIHIGIILSTLGAALQSLTGAPRLLAAIANDDILPVLNYFKVAEGR--EPHIATFFTAF 499
            +I  GI  +TL +AL SL  APRL  A+  D+I P L +F    G+  EP  A   TAF
Sbjct: 388 PLITAGIFSATLSSALASLVSAPRLFQALCKDNIYPFLQFFGKGYGKNGEPLRAYLLTAF 447

Query: 500 ICIGCVIIGNLDLITPTITMFFLLCYSGVNLSCFLLDLLDAPSWRPRWKFHHWSLSLLGS 559
           I  G ++I  L+ I P I+ FFL  Y+ +N SCF   LL +P WRPR+K++HW LSLLG+
Sbjct: 448 IAEGFILIAELNTIAPIISNFFLASYALINFSCFHASLLRSPGWRPRFKYYHWWLSLLGA 507

Query: 560 VFCIVIMFLISWSFTVVSLALASLIYYYVCLKGKAGDWGDGLKSAYFQLALRSLRSLGAN 619
             C  IMFLISW   +V++ +A  +Y YV  K    +WG   ++  + LAL SL  L   
Sbjct: 508 SLCCAIMFLISWWAALVAMVIALFLYKYVTYKKPDVNWGSSTQALSYSLALYSLLRLEEV 567

Query: 620 QVHPKNWYPIPLIFCRPWGKLPENVPCHPKLADFANCMKKKGRGMSIFVSILDGDYHECA 679
           + H KNW P  L+   P         C P L DFA+    KG+G+ I  S++ G   EC 
Sbjct: 568 EDHVKNWRPQCLVLTGPP-------VCRPALLDFASQF-TKGKGLMICGSVIQGPRLECV 619

Query: 680 EDAKTACKQLATYIDYKRCEGVAEIVVAPNMSEGFRGIVQTMGLGNLKPNIVVMRYPEIW 739
           ++A+ A  ++ T+++  + +    +VVA ++ EG R ++Q  GLG +KPN +VM Y + W
Sbjct: 620 KEAQAAEAKIQTWLEKNKVKAFYAVVVADDLREGVRHLIQASGLGRMKPNTLVMGYKKDW 679

Query: 740 RRENLTEIPATFVGIINDCIVANKAVVIVKGLDEWPNEY--------------------- 778
           R+        T++GII+D   A+ AVV+V+  +  P                        
Sbjct: 680 RQAE-PRAWETYIGIIHDAFDAHLAVVVVRNSEGLPISVLQVQEELENDCSEDSIELNDG 738

Query: 779 -----------------QRQY-GTIDLYWIVRDGGLMLLLSQLLLTKESFESCKIQVFCI 820
                            ++Q  GTID++W+V DGGL LLL  LL TK+ ++ CKI++F  
Sbjct: 739 KISTQPDMHLEASTQFQKKQGKGTIDVWWLVDDGGLTLLLPYLLTTKKVWKKCKIRIFVG 798

Query: 821 AEEDSDAEVLKADVKKFLYDLRMQAEVIVISMKSWDEQTENGPQQDESLDAFIAAQHRIK 880
           A++D  +E  K D+   LY  R+ AEVIV+ M        N   Q ES++AF       +
Sbjct: 799 AQKDDRSEQEKKDMATLLYKFRIDAEVIVVLMDI------NAKPQTESMEAFEEMIRPFR 852

Query: 881 NYLAEMKAEAQKSGTPLMADGKPVVVNE---QQVEKFLYTTLKLNSTILRHSRMAAVVLV 937
            +  E   EA     P M   KP  + +   Q   +  Y  ++LN  +L +SR AA+V++
Sbjct: 853 LHKTEKDREA---KDPKMTWTKPWKITDAELQSNVRKSYRQVRLNELLLEYSRDAALVVL 909

Query: 938 SLPPPPIN-HPAYCYMEYMDLLVENVPRLLIVRGYRRDVVTLFT 980
           SLP P     P   YM ++++L E++P +L+VRG  R+V+T ++
Sbjct: 910 SLPVPRKGSIPDELYMAWLEVLSEDLPPVLLVRGNHRNVLTFYS 953

[Transport and binding proteins, Other]. Length = 953

>gnl\|CDD\|215858 pfam00324, AA_permease, Amino acid permease	Back alignment and domain information

>gnl\|CDD\|223605 COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism]	Back alignment and domain information

>gnl\|CDD\|222193 pfam13520, AA_permease_2, Amino acid permease	Back alignment and domain information

>gnl\|CDD\|129987 TIGR00909, 2A0306, amino acid transporter	Back alignment and domain information

>gnl\|CDD\|233179 TIGR00911, 2A0308, L-type amino acid transporter	Back alignment and domain information

>gnl\|CDD\|129983 TIGR00905, 2A0302, transporter, basic amino acid/polyamine antiporter (APA) family	Back alignment and domain information

>gnl\|CDD\|233178 TIGR00907, 2A0304, amino acid permease (GABA permease)	Back alignment and domain information

>gnl\|CDD\|212036 cd10326, SLC5sbd_NIS-like, Na(+)/iodide (NIS) and Na(+)/multivitamin (SMVT) cotransporters, and related proteins; solute binding domain	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		980
KOG2082		1075	consensus K+/Cl- cotransporter KCC1 and related tr	100.0
TIGR00930		953	2a30 K-Cl cotransporter.	100.0
KOG1288		945	consensus Amino acid transporters [Amino acid tran	100.0
KOG2083		643	consensus Na+/K+ symporter [Inorganic ion transpor	100.0
COG0833		541	LysP Amino acid transporters [Amino acid transport	100.0
KOG1286		554	consensus Amino acid transporters [Amino acid tran	100.0
COG1113		462	AnsP Gamma-aminobutyrate permease and related perm	100.0
PRK15049		499	L-asparagine permease; Provisional	100.0
PRK10746		461	putative transport protein YifK; Provisional	100.0
PRK10836		489	lysine transporter; Provisional	100.0
PRK10249		458	phenylalanine transporter; Provisional	100.0
PRK10238		456	aromatic amino acid transporter; Provisional	100.0
TIGR00906		557	2A0303 cationic amino acid transport permease.	100.0
PRK10197		446	gamma-aminobutyrate transporter; Provisional	100.0
PRK11387		471	S-methylmethionine transporter; Provisional	100.0
PF00324		478	AA_permease: Amino acid permease; InterPro: IPR004	100.0
TIGR00913		478	2A0310 amino acid permease (yeast).	100.0
KOG1287		479	consensus Amino acid transporters [Amino acid tran	100.0
TIGR01773		452	GABAperm gamma-aminobutyrate permease. GabP is hig	100.0
TIGR00908		442	2A0305 ethanolamine permease. The three genes used	100.0
PRK10580		457	proY putative proline-specific permease; Provision	100.0
PRK10644		445	arginine:agmatin antiporter; Provisional	100.0
PRK11049		469	D-alanine/D-serine/glycine permease; Provisional	100.0
TIGR00911		501	2A0308 L-type amino acid transporter.	100.0
PRK10655		438	potE putrescine transporter; Provisional	100.0
PRK10435		435	cadB lysine/cadaverine antiporter; Provisional	100.0
PRK11357		445	frlA putative fructoselysine transporter; Provisio	100.0
TIGR00905		473	2A0302 transporter, basic amino acid/polyamine ant	100.0
PRK11021		410	putative transporter; Provisional	100.0
TIGR00909		429	2A0306 amino acid transporter.	100.0
TIGR03810		468	arg_ornith_anti arginine/ornithine antiporter. Mem	100.0
TIGR00907		482	2A0304 amino acid permease (GABA permease).	100.0
TIGR03428		475	ureacarb_perm permease, urea carboxylase system. A	100.0
TIGR03813		474	put_Glu_GABA_T putative glutamate/gamma-aminobutyr	100.0
KOG1289		550	consensus Amino acid transporters [Amino acid tran	100.0
TIGR00910		507	2A0307_GadC glutamate:gamma-aminobutyrate antiport	100.0
PRK15238		496	inner membrane transporter YjeM; Provisional	100.0
PF13520		426	AA_permease_2: Amino acid permease; PDB: 3NCY_A 3G	100.0
COG0531		466	PotE Amino acid transporters [Amino acid transport	100.0
TIGR00837		381	araaP aromatic amino acid transport protein. aroma	99.86
TIGR00912		359	2A0309 spore germination protein (amino acid perme	99.58
TIGR00796		378	livcs branched-chain amino acid uptake carrier. tr	99.56
PHA02764		399	hypothetical protein; Provisional	99.49
PF03222		394	Trp_Tyr_perm: Tryptophan/tyrosine permease family;	99.33
TIGR00814		397	stp serine transporter. The HAAAP family includes	99.21
COG0814		415	SdaC Amino acid permeases [Amino acid transport an	99.11
PRK15132		403	tyrosine transporter TyrP; Provisional	99.09
PRK10483		414	tryptophan permease; Provisional	99.08
PRK09664		415	tryptophan permease TnaB; Provisional	99.02
PRK13629		443	threonine/serine transporter TdcC; Provisional	98.76
PF03845		320	Spore_permease: Spore germination protein; InterPr	98.63
PTZ00206		467	amino acid transporter; Provisional	98.3
PF01235		416	Na_Ala_symp: Sodium:alanine symporter family; Inte	98.2
KOG1303		437	consensus Amino acid transporters [Amino acid tran	98.19
PLN03074		473	auxin influx permease; Provisional	98.11
KOG1304		449	consensus Amino acid transporters [Amino acid tran	97.81
PF01490		409	Aa_trans: Transmembrane amino acid transporter pro	97.81
PRK11017		404	codB cytosine permease; Provisional	97.8
COG1115		452	AlsT Na+/alanine symporter [Amino acid transport a	97.76
PRK11375		484	allantoin permease; Provisional	97.75
TIGR00835		425	agcS amino acid carrier protein. Members of the AG	97.65
COG1457		442	CodB Purine-cytosine permease and related proteins	97.58
PF01566		358	Nramp: Natural resistance-associated macrophage pr	97.41
PF05525		427	Branch_AA_trans: Branched-chain amino acid transpo	97.34
PRK00701		439	manganese transport protein MntH; Reviewed	97.14
COG1114		431	BrnQ Branched-chain amino acid permeases [Amino ac	97.01
PRK15433		439	branched-chain amino acid transport system 2 carri	96.84
PF02705		534	K_trans: K+ potassium transporter; InterPro: IPR00	96.8
TIGR02358		386	thia_cytX probable hydroxymethylpyrimidine transpo	96.51
COG0733		439	Na+-dependent transporters of the SNF family [Gene	96.37
COG3949		349	Uncharacterized membrane protein [Function unknown	96.34
COG0591		493	PutP Na+/proline symporter [Amino acid transport a	96.14
PRK09442		483	panF sodium/panthothenate symporter; Provisional	96.07
PRK10745		622	trkD potassium transport protein Kup; Provisional	95.79
PLN00149		779	potassium transporter; Provisional	95.71
TIGR00794		688	kup potassium uptake protein. Proteins of the KUP	95.5
PLN00150		779	potassium ion transporter family protein; Provisio	95.27
PLN00148		785	potassium transporter; Provisional	95.21
TIGR00800		442	ncs1 NCS1 nucleoside transporter family. The NCS1	95.18
TIGR02119		471	panF sodium/pantothenate symporter. Pantothenate (	94.94
PLN00151		852	potassium transporter; Provisional	94.81
PF13906		51	AA_permease_C: C-terminus of AA_permease	94.36
TIGR02121		487	Na_Pro_sym sodium/proline symporter. This family c	94.2
PRK15419		502	proline:sodium symporter PutP; Provisional	93.71
COG3158		627	Kup K+ transporter [Inorganic ion transport and me	92.65
KOG2082		1075	consensus K+/Cl- cotransporter KCC1 and related tr	91.63
KOG1305		411	consensus Amino acid transporter protein [Amino ac	91.33
PF00474		406	SSF: Sodium:solute symporter family; InterPro: IPR	91.13
COG1914		416	MntH Mn2+ and Fe2+ transporters of the NRAMP famil	91.12
TIGR02711		549	symport_actP cation/acetate symporter ActP. Member	89.81
TIGR00813		407	sss transporter, SSS family. have different number	89.48
PF00209		523	SNF: Sodium:neurotransmitter symporter family; Int	86.73
cd01987		124	USP_OKCHK USP domain is located between the N-term	86.67
COG4147		529	DhlC Predicted symporter [General function predict	84.91
TIGR03648		552	Na_symport_lg probable sodium:solute symporter, VC	83.37
PRK10484		523	putative transporter; Provisional	83.09
PF02133		440	Transp_cyt_pur: Permease for cytosine/purines, ura	81.23

>KOG2082 consensus K+/Cl- cotransporter KCC1 and related transporters [Inorganic ion transport and metabolism]	Back alignment and domain information

Probab=100.00  E-value=3.2e-162  Score=1348.86  Aligned_cols=850  Identities=44%  Similarity=0.787  Sum_probs=746.7

Q ss_pred             CCcccCCCCCCCcccccceeeeecccchhhhhhHhhhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHcCCcccc
Q 002018          118 DAPITYGPPKPSDVKLGTLMGVFIPCLQNILGIIYYIRFTWIVGMGGIGDSLLVVAFCGSCTFLTSISLSAIATNGAMKG  197 (980)
Q Consensus       118 ~l~~~l~~~~~~~~~lG~~~Gv~i~~~~~i~G~~lFl~~g~~lg~aG~~~~li~~li~~~i~~~~~ls~aElat~~~p~~  197 (980)
                      +-+..-+.++....++|+++|||+||++||+|+++|+|+.|++|.||.+..+++.++|++++++|++|++++||||...+
T Consensus        99 ~~~~~~g~~~~~a~~mGt~mGVyLPclQnIlGVilFiRLtWvVG~AGv~q~fllv~iCC~cTmLTaISmSAIATNGVVpa  178 (1075)
T KOG2082|consen   99 EAEEHEGRRPAKAARMGTLMGVYLPCLQNILGVILFIRLTWVVGMAGVGQGFLLVFICCLCTMLTAISMSAIATNGVVPA  178 (1075)
T ss_pred             hcccccCCCCCCccccceeeeeeHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccC
Confidence            33344456778889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CchhhhHHHHhCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccCCCcchhhhhccCCCCCCCCCCCCCCchhHHH
Q 002018          198 GGPYYLIGRALGPEVGVSIGLCFFLGNAVAGAMYVLGAVETFLK-AVPAAGMFRETITKVNGTATPEPIQSPSLHDLQIY  276 (980)
Q Consensus       198 GG~y~~~sr~lgp~~Gf~~Gw~~~l~~~~~~a~~~~~~~~~l~~-~~p~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~i~  276 (980)
                      ||.|+++||++||+||.++|.+||++++++.|||++|.+|.++. .+|.+.+++..-.        .....+..++.+++
T Consensus       179 GGsYfmISRsLGPEFGgAVGlcFYLgtT~AaaMYIlGaVEi~L~Yi~P~aaIf~~~~a--------~~~~~am~nnlRvY  250 (1075)
T KOG2082|consen  179 GGSYFMISRSLGPEFGGAVGLCFYLGTTVAAAMYILGAVEIFLTYIFPAAAIFGAEDA--------HDEAAAMLNNLRVY  250 (1075)
T ss_pred             CCeeEEEecccCccccceeeehhhhhhHHHHHHHHHhHHHHHHHHHccHhhhcCcccc--------ccchhhhhcceehH
Confidence            99999999999999999999999999999999999999999876 6888877642211        11124567889999


Q ss_pred             HHHHHHHHHHHHHhhhhHHHHHhhHHHHHHHHHHHHhhheeeecCCCCC-------------------------------
Q 002018          277 GIIVTIILCFIVFGGVKIINRVAPTFLIPVLLSIFCIFVGILLASKDDP-------------------------------  325 (980)
Q Consensus       277 ~~i~l~~~~~in~~Gvk~~~~~~~~~~~~~il~i~~iiig~~~~~~~~~-------------------------------  325 (980)
                      +++++++.++|.+.|||+..++..++..|++++|+.+++|.+....+.+                               
T Consensus       251 GT~~Li~m~lIVf~GVK~Vnk~A~vfL~CVILSIlaiyaG~i~~~~~~~~~~vC~lgnr~L~~~~~d~c~k~~~~~~~~~  330 (1075)
T KOG2082|consen  251 GTVFLILMALIVFVGVKFVNKFAPVFLACVILSILAIYAGGIKSIFDPPGFPVCMLGNRLLSSSIFDNCSKTETVDNDNV  330 (1075)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhhhccCCCCCeeEEecceeccccccccchhhhccccccH
Confidence            9999999999999999999999999999999999998888765332211                               


Q ss_pred             -----------------------------CCCcccccccccccccCcccccCCC--------CCCCCC------CCCchh
Q 002018          326 -----------------------------APGITGLKLKTFKDNWFSDYQKTNN--------AGIPDP------NGAVDW  362 (980)
Q Consensus       326 -----------------------------~~~~~g~~~~~~~~n~~~~f~~~~~--------~g~~~~------~g~~~~  362 (980)
                                                   -.|+.|+...++.+|++|.|...+.        .+++..      .++..+
T Consensus       331 ~~~L~~~fC~~~~~~~~c~~y~~~nnvt~i~GipG~a~g~~~eNlws~Ylekg~~v~~g~~~~~~~~~~~~~~V~~Di~t  410 (1075)
T KOG2082|consen  331 TSFLWGLFCNSNNDSATCDEYFSKNNVTEIQGIPGLASGVFKENLWSAYLEKGEIVEYGVPSADIADSSGHPYVVQDITT  410 (1075)
T ss_pred             HHHHHHhhCCCCCCCcccccccccccceeecCCcchhhhhhhhhhhHhhhcccccccCCCCCCCcccccCCCceeecchh
Confidence                                         1278899999999999998843331        112221      234467


Q ss_pred             HHHHHHHHHHHhhHHHHHHhhhcccccccccchhHHHHHHHHHHHHHHHHHHHHHhhccc----hhhh---hhhhhhHhh
Q 002018          363 SFNALVGLFFPAVTGIMAGSNRSASLKDTQRSIPIGTLAATLTTTALYVISVLLFGAAAT----REEL---LTDRLLTAT  435 (980)
Q Consensus       363 ~f~~~f~~~~~a~tG~ea~a~~a~E~knP~ksIP~a~~~si~~~~v~Yil~~~~~g~~~~----~~~~---~~~~~~~~~  435 (980)
                      +|....+++|||+||+++++|+||++|||+|+||.|++.+++.+..+|+.+++++|.++.    +|..   ..+.++.+.
T Consensus       411 SFtlLvgIfFPsVTGImaGSNrSGDLkDaQkSIPvGTI~AilTTS~vYlssv~lFGa~i~~~vLRDKfG~sv~g~lVva~  490 (1075)
T KOG2082|consen  411 SFTLLVGIFFPSVTGIMAGSNRSGDLKDAQKSIPVGTIAAILTTSFVYLSSVVLFGACIEGVVLRDKFGQSVGGNLVVAT  490 (1075)
T ss_pred             hHHHHHHhhccccceeeecCCCCccccchhhcCchhhhHHHHHHHHHHHHHHHHHHHhhcchhhhhhhhhhccCcEEEEE
Confidence            899999999999999999999999999999999999999999999999999999999987    5554   455678889


Q ss_pred             ccCchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhcCCCCCccceeec-CCCCCchhhHHHHHHHHhhhhccccccchh
Q 002018          436 IAWPFPAVIHIGIILSTLGAALQSLTGAPRLLAAIANDDILPVLNYFKV-AEGREPHIATFFTAFICIGCVIIGNLDLIT  514 (980)
Q Consensus       436 ~~~~~~~ii~~~il~s~lss~~s~l~~asR~L~alArDg~lP~~~~~~~-~~~g~P~~Aill~~~i~~l~~l~~~~~~l~  514 (980)
                      .+||.||++.+|.++|+++++++++.++||+|||+|||+++|.+..|++ .++|+|.+|+++|.+||.+.+++++++.++
T Consensus       491 laWPsPwVi~IGsFlST~GAgLQsLtgAPRLLQAIAkD~IiPfL~~F~~~~~ngEPt~aLlLT~~Ice~gILigslD~iA  570 (1075)
T KOG2082|consen  491 LAWPSPWVIVIGSFLSTCGAGLQSLTGAPRLLQAIAKDDIIPFLAPFGHGKANGEPTWALLLTAIICECGILIGSLDLIA  570 (1075)
T ss_pred             ecCCCceeeehhHHHHHhHHHHhhhcCcHHHHHHHhhcCccchhhhhccccCCCCccHHHHHHHHHHHhhheeechhHHH
Confidence            9999999999999999999999999999999999999999999877755 457999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhheeeeeCCC
Q 002018          515 PTITMFFLLCYSGVNLSCFLLDLLDAPSWRPRWKFHHWSLSLLGSVFCIVIMFLISWSFTVVSLALASLIYYYVCLKGKA  594 (980)
Q Consensus       515 ~i~s~~~ll~y~~i~la~~~~r~~~~p~~r~~f~~~~~~~~l~g~i~~~~~~~~~~~~~~~~~l~i~~~l~~~~~~~~~~  594 (980)
                      ++.++|||+||.++|++|.+....+.|+|||+|||+||.++++|+.+|+++||+.+|.++++++.++.++|.|+.||+.+
T Consensus       571 pilsmFFLMCY~fVNLaCavqtLLrtPnWRPRfkyyHW~LSflG~sLC~~iMF~~SWyyAlvAm~~a~~IYKYiEykGAe  650 (1075)
T KOG2082|consen  571 PILSMFFLMCYLFVNLACAVQTLLRTPNWRPRFKYYHWSLSFLGASLCLAIMFISSWYYALVAMLIAGVIYKYIEYKGAE  650 (1075)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHhcCCCCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCchhHHHHHHHHHHHHHhcCCCCCCCcccCCceEEeeCCCCCCCCCCCCchhhhhhHHHhhhCCCeeEEEEEEecCC
Q 002018          595 GDWGDGLKSAYFQLALRSLRSLGANQVHPKNWYPIPLIFCRPWGKLPENVPCHPKLADFANCMKKKGRGMSIFVSILDGD  674 (980)
Q Consensus       595 ~~wG~~~~~~~~~~~~~~l~~l~~~~~h~k~~rP~ilv~~~~~~~~~~~~~~~~~L~~fa~~l~k~g~g~~~~~~v~~~~  674 (980)
                      |+|||+.+++.++.||++|+++++.++|+||||||+||+++.   .++..+++++|++|++|+| .|+|+.+++++++|+
T Consensus       651 KEWGDGiRGlsLtaArysLlrlEegpPH~KNWRPQlLVll~~---~~~~~vk~p~ll~~asqlK-aGkGltIv~s~l~G~  726 (1075)
T KOG2082|consen  651 KEWGDGIRGLSLSAARYSLLRLEEGPPHPKNWRPQLLVLLRL---DEDIDVKHPRLLNFASQLK-AGKGLTIVGSVLQGT  726 (1075)
T ss_pred             chhccchhhHHHHHHHHHHHhcccCCCCCCCCCceeeeeecc---cchhchhhhhHhhHHHHhh-cCCCeEEEEEeecCC
Confidence            999999999999999999999999999999999999999973   3455678999999999998 789999999999999


Q ss_pred             CccchHHHHHHHHHHHHHHHhhcccceEEEEecCChHHHHHHHHHHhCCCCCCCcEEEecCcccccccccCCcchhHHHH
Q 002018          675 YHECAEDAKTACKQLATYIDYKRCEGVAEIVVAPNMSEGFRGIVQTMGLGNLKPNIVVMRYPEIWRRENLTEIPATFVGI  754 (980)
Q Consensus       675 ~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~a~~~~~g~~~l~q~~GlG~l~PNtv~lg~~~~w~~~~~~~~~~~~v~~  754 (980)
                      +.+...++++++++++..++..|+|+|+++++++++++|+++++|+.|||+|||||++|+||+.||+++..+.+..|+++
T Consensus       727 ~~e~~~~a~~a~~t~~~~m~~~r~~Gf~q~vv~~~ir~g~s~liQs~GlGglkpNtvl~~wP~~wr~e~~~~~~~tFi~~  806 (1075)
T KOG2082|consen  727 FLEDKGEAQRAEETIRTLMEAERVKGFAQTVVASNLREGISHLIQSCGLGGLKPNTVLMGWPEGWRQEEDPREWKTFIET  806 (1075)
T ss_pred             chhhhHHHHHHHHHHHHHHhHHHhhhhhhhhcccchhhhhhhceeeccccCccCceEEEeCcchhcccccchHHHHHHHH
Confidence            99888889999999999999999999999999999999999999999999999999999999999999988889999999


Q ss_pred             HHHHHhhcceEEEEecCCCCcccccccCCcceeEEEeeCChHHHHHHHHhccCcccCCceEEEEEEecCCchHHHHHHHH
Q 002018          755 INDCIVANKAVVIVKGLDEWPNEYQRQYGTIDLYWIVRDGGLMLLLSQLLLTKESFESCKIQVFCIAEEDSDAEVLKADV  834 (980)
Q Consensus       755 i~~~~~~~~~v~i~r~~~~~p~~~~~~~g~IDvwW~~~dGgL~lll~~lL~~~~~W~~~klRvf~~~~~~~~~~~~~~~l  834 (980)
                      ++++.+.++++++.||++.||.+.++..|+|||||++||||+++|+||||++|++||+||+|+|++++.+|+.++||+++
T Consensus       807 v~~~~a~~~al~v~K~i~~fP~~~er~~G~IDvwWIVhDGG~lmLl~~LL~qhkvwr~C~~rif~vaq~~dns~~mk~dl  886 (1075)
T KOG2082|consen  807 VRDTTAAHLALLVAKGIDDFPSNVERFSGHIDVWWIVHDGGMLMLLPFLLRQHKVWRKCKMRIFTVAQEDDNSIQMKKDL  886 (1075)
T ss_pred             HHHhhccceeEEEecCcccCchhhhhhcCceeEEEEEecCchHHHHHHHHHHHHHHhhceeeEEEEeeccCcHHHHHHHH
Confidence            99999999999999999999999999889999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcccCcEEEEEecCCccccccC------CCCChhhHH---HHHHHHHhHh---hh--------------------
Q 002018          835 KKFLYDLRMQAEVIVISMKSWDEQTEN------GPQQDESLD---AFIAAQHRIK---NY--------------------  882 (980)
Q Consensus       835 ~~ll~~~RI~a~v~vv~~~~~~~~~~~------~~~~~~~~~---~~~~~~~~~~---~~--------------------  882 (980)
                      +++|+++||+|||.||++.++|+++++      ++++.+..+   .+.+.+++..   ..                    
T Consensus       887 ~~flY~LRi~Aev~vVem~~~dis~~~~ertl~mE~rsq~~~~m~~~k~~~~r~~l~~d~~~~~~~~s~~s~~~~~~~~~  966 (1075)
T KOG2082|consen  887 QKFLYHLRIDAEVEVVEMHDSDISAYTYERTLMMEQRSQMLRQMRLSKNERERAQLIHDRNAPRRPSSLHSDEARPFETA  966 (1075)
T ss_pred             HHHHHhhcccceEEEEEecchhhhHHHHHHHHHHHhhHHHHHHHHhhhhhhhccccchhcCCccccccccccccccCCCC
Confidence            999999999999999999999987742      223333222   1221111100   00                    


Q ss_pred             -------hhHhhHhhhhcCCC--CccCCCc--cccCHHHHHHHHHHHHHHHHHHHhcCCCccEEEEecCCCCCCC-Chhc
Q 002018          883 -------LAEMKAEAQKSGTP--LMADGKP--VVVNEQQVEKFLYTTLKLNSTILRHSRMAAVVLVSLPPPPINH-PAYC  950 (980)
Q Consensus       883 -------~~~~~~~~~~~~~~--~~~~~~~--~~~~~~~~~~~~~~~~~lneli~~~S~~a~lv~~~LP~p~~~~-~~~~  950 (980)
                             |...|..+ ...++  .+...++  ..-.++...++|||++||||+|++||+||+||++|||.||++. .+.+
T Consensus       967 ~~~~~~~~t~~k~~~-~~~~~~~~~~~~k~~~~~~~~~snv~~mhTavkLN~vi~~~S~~a~lvLlnlP~PP~n~~~~~~ 1045 (1075)
T KOG2082|consen  967 PTKVQMTWTRDKYMA-STSNPAFSLSGFKDLFSMKPDQSNVRRMHTAVKLNEVILNKSRDAQLVLLNLPGPPRNRQGDEN 1045 (1075)
T ss_pred             CcceechhhhhhHHH-hccCCcchhccCCcccccChhhHHHHHHHHHHHHHHHHHhcCccccEEEecCcCCCCCCcchhh
Confidence                   00000000 00000  1111111  1112344556799999999999999999999999999999986 5689


Q ss_pred             HHHHHHHhhcCCCceEEEccCCceeeeecC
Q 002018          951 YMEYMDLLVENVPRLLIVRGYRRDVVTLFT  980 (980)
Q Consensus       951 Ym~~l~~lt~~l~p~llVrG~~~~v~t~ys  980 (980)
                      ||+|||+||++|||||||||.|+||||+||
T Consensus      1046 Ymeylevlte~l~Rvl~VrG~greViTi~s 1075 (1075)
T KOG2082|consen 1046 YMEYLEVLTEGLPRVLLVRGGGREVITIYS 1075 (1075)
T ss_pred             HHHHHHHHHcCCCeEEEEccCCceEEEecC
Confidence            999999999999999999999999999998

>TIGR00930 2a30 K-Cl cotransporter	Back alignment and domain information

>KOG1288 consensus Amino acid transporters [Amino acid transport and metabolism]	Back alignment and domain information

>KOG2083 consensus Na+/K+ symporter [Inorganic ion transport and metabolism]	Back alignment and domain information

>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism]	Back alignment and domain information

>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism]	Back alignment and domain information

>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]	Back alignment and domain information

>PRK15049 L-asparagine permease; Provisional	Back alignment and domain information

>PRK10746 putative transport protein YifK; Provisional	Back alignment and domain information

>PRK10836 lysine transporter; Provisional	Back alignment and domain information

>PRK10249 phenylalanine transporter; Provisional	Back alignment and domain information

>PRK10238 aromatic amino acid transporter; Provisional	Back alignment and domain information

>TIGR00906 2A0303 cationic amino acid transport permease	Back alignment and domain information

>PRK10197 gamma-aminobutyrate transporter; Provisional	Back alignment and domain information

>PRK11387 S-methylmethionine transporter; Provisional	Back alignment and domain information

>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell	Back alignment and domain information

>TIGR00913 2A0310 amino acid permease (yeast)	Back alignment and domain information

>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism]	Back alignment and domain information

>TIGR01773 GABAperm gamma-aminobutyrate permease	Back alignment and domain information

>TIGR00908 2A0305 ethanolamine permease	Back alignment and domain information

>PRK10580 proY putative proline-specific permease; Provisional	Back alignment and domain information

>PRK10644 arginine:agmatin antiporter; Provisional	Back alignment and domain information

>PRK11049 D-alanine/D-serine/glycine permease; Provisional	Back alignment and domain information

>TIGR00911 2A0308 L-type amino acid transporter	Back alignment and domain information

>PRK10655 potE putrescine transporter; Provisional	Back alignment and domain information

>PRK10435 cadB lysine/cadaverine antiporter; Provisional	Back alignment and domain information

>PRK11357 frlA putative fructoselysine transporter; Provisional	Back alignment and domain information

>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family	Back alignment and domain information

>PRK11021 putative transporter; Provisional	Back alignment and domain information

>TIGR00909 2A0306 amino acid transporter	Back alignment and domain information

>TIGR03810 arg_ornith_anti arginine/ornithine antiporter	Back alignment and domain information

>TIGR00907 2A0304 amino acid permease (GABA permease)	Back alignment and domain information

>TIGR03428 ureacarb_perm permease, urea carboxylase system	Back alignment and domain information

>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter	Back alignment and domain information

>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism]	Back alignment and domain information

>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter	Back alignment and domain information

>PRK15238 inner membrane transporter YjeM; Provisional	Back alignment and domain information

>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A	Back alignment and domain information

>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]	Back alignment and domain information

>TIGR00837 araaP aromatic amino acid transport protein	Back alignment and domain information

>TIGR00912 2A0309 spore germination protein (amino acid permease)	Back alignment and domain information

>TIGR00796 livcs branched-chain amino acid uptake carrier	Back alignment and domain information

>PHA02764 hypothetical protein; Provisional	Back alignment and domain information

>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell	Back alignment and domain information

>TIGR00814 stp serine transporter	Back alignment and domain information

>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]	Back alignment and domain information

>PRK15132 tyrosine transporter TyrP; Provisional	Back alignment and domain information

>PRK10483 tryptophan permease; Provisional	Back alignment and domain information

>PRK09664 tryptophan permease TnaB; Provisional	Back alignment and domain information

>PRK13629 threonine/serine transporter TdcC; Provisional	Back alignment and domain information

>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell	Back alignment and domain information

>PTZ00206 amino acid transporter; Provisional	Back alignment and domain information

>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups	Back alignment and domain information

>KOG1303 consensus Amino acid transporters [Amino acid transport and metabolism]	Back alignment and domain information

>PLN03074 auxin influx permease; Provisional	Back alignment and domain information

>KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism]	Back alignment and domain information

>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR)	Back alignment and domain information

>PRK11017 codB cytosine permease; Provisional	Back alignment and domain information

>COG1115 AlsT Na+/alanine symporter [Amino acid transport and metabolism]	Back alignment and domain information

>PRK11375 allantoin permease; Provisional	Back alignment and domain information

>TIGR00835 agcS amino acid carrier protein	Back alignment and domain information

>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism]	Back alignment and domain information

>PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2	Back alignment and domain information

>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V))	Back alignment and domain information

>PRK00701 manganese transport protein MntH; Reviewed	Back alignment and domain information

>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism]	Back alignment and domain information

>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional	Back alignment and domain information

>PF02705 K_trans: K+ potassium transporter; InterPro: IPR003855 This is a family of K+ potassium transporters that are conserved across phyla, having both bacterial (KUP) [], yeast (HAK) [], and plant (AtKT) [] sequences as members	Back alignment and domain information

>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX	Back alignment and domain information

>COG0733 Na+-dependent transporters of the SNF family [General function prediction only]	Back alignment and domain information

>COG3949 Uncharacterized membrane protein [Function unknown]	Back alignment and domain information

>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only]	Back alignment and domain information

>PRK09442 panF sodium/panthothenate symporter; Provisional	Back alignment and domain information

>PRK10745 trkD potassium transport protein Kup; Provisional	Back alignment and domain information

>PLN00149 potassium transporter; Provisional	Back alignment and domain information

>TIGR00794 kup potassium uptake protein	Back alignment and domain information

>PLN00150 potassium ion transporter family protein; Provisional	Back alignment and domain information

>PLN00148 potassium transporter; Provisional	Back alignment and domain information

>TIGR00800 ncs1 NCS1 nucleoside transporter family	Back alignment and domain information

>TIGR02119 panF sodium/pantothenate symporter	Back alignment and domain information

>PLN00151 potassium transporter; Provisional	Back alignment and domain information

>PF13906 AA_permease_C: C-terminus of AA_permease	Back alignment and domain information

>TIGR02121 Na_Pro_sym sodium/proline symporter	Back alignment and domain information

>PRK15419 proline:sodium symporter PutP; Provisional	Back alignment and domain information

>COG3158 Kup K+ transporter [Inorganic ion transport and metabolism]	Back alignment and domain information

>KOG2082 consensus K+/Cl- cotransporter KCC1 and related transporters [Inorganic ion transport and metabolism]	Back alignment and domain information

>KOG1305 consensus Amino acid transporter protein [Amino acid transport and metabolism]	Back alignment and domain information

>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells	Back alignment and domain information

>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]	Back alignment and domain information

>TIGR02711 symport_actP cation/acetate symporter ActP	Back alignment and domain information

>TIGR00813 sss transporter, SSS family	Back alignment and domain information

>PF00209 SNF: Sodium:neurotransmitter symporter family; InterPro: IPR000175 Neurotransmitter transport systems are integral to the release, re-uptake and recycling of neurotransmitters at synapses	Back alignment and domain information

>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family	Back alignment and domain information

>COG4147 DhlC Predicted symporter [General function prediction only]	Back alignment and domain information

>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily	Back alignment and domain information

>PRK10484 putative transporter; Provisional	Back alignment and domain information

>PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		980
3l1l_A		445	Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC	2e-21
3g40_A		294	Na-K-CL cotransporter; alpha/beta fold 10-stranded	1e-19
3gia_A		444	Uncharacterized protein MJ0609; membrane protein,	1e-19
4djk_A		511	Probable glutamate/gamma-aminobutyrate antiporter;	1e-16
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-12
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-08
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-07
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04

>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A Length = 445	Back alignment and structure

 Score = 97.4 bits (243), Expect = 2e-21
 Identities = 64/410 (15%), Positives = 121/410 (29%), Gaps = 68/410 (16%)

Query: 196 KGGGPYYLIGRALGPEVGVSIGLCFFLGNAVAGAMYVLGAVETFLKAVPAAGMFRETITK 255
             GG Y    R  GP +G    + ++L   +     V+  V       P           
Sbjct: 69  SPGGSYAYARRCFGPFLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPILK-------- 120

Query: 256 VNGTATPEPIQSPSLHDLQIYGIIVTIILCFIVFGGVKIINRVAPTFLIPVLLSIFCIFV 315
            +                 I  ++V  I   +   G K+I RV     +  L+ I     
Sbjct: 121 -DPWVLT------------ITCVVVLWIFVLLNIVGPKMITRVQAVATVLALIPIV-GIA 166

Query: 316 GILLASKDDPAPGITGLKLKTFKDNWFSDYQKTNNAGIPDPNGAVDWSFNALVGLFFPAV 375
                       G    + +T+   W                G      + L    + + 
Sbjct: 167 VF----------GWFWFRGETYMAAWN-----------VSGLGTFGAIQSTLNVTLW-SF 204

Query: 376 TGIMAGSNRSASLKDTQRSIPIGTLAATLTTTALYVISVLLFGAAATREEL------LTD 429
            G+ + S  +  +K+ +R++PI T+   L     YV+S            L        D
Sbjct: 205 IGVESASVAAGVVKNPKRNVPIATIGGVLIAAVCYVLSTTAIMGMIPNAALRVSASPFGD 264

Query: 430 RLLTATIAWPFPAVIHIGIILSTLGAALQSLTGAPRLLAAIANDDILPVLNYF-KVAEGR 488
               A       A++        LG+       A +   A A+D + P    F +V +  
Sbjct: 265 AARMALGDT-AGAIVSFCAAAGCLGSLGGWTLLAGQTAKAAADDGLFP--PIFARVNKAG 321

Query: 489 EPHIATFFTAFICIGCVIIG-------NLDLITPTITMFFLLCYSGVNLSCFLLDLLDAP 541
            P         +     +            L++    +F L+ Y     +  LL      
Sbjct: 322 TPVAGLIIVGILMTIFQLSSISPNATKEFGLVSSVSVIFTLVPYLYTCAALLLLGHGHFG 381

Query: 542 SWRPRWKFHHWSLSLLGSVFCIVIMF---LISWSFTVVSLALASLIYYYV 588
             RP +      ++ +  ++CI  +         ++ V+L + + +Y   
Sbjct: 382 KARPAYLA----VTTIAFLYCIWAVVGSGAKEVMWSFVTLMVITAMYALN 427

PyMOL of 3l1l

>3g40_A Na-K-CL cotransporter; alpha/beta fold 10-stranded twisted beta sheet, transport protein; 1.90A {Methanosarcina acetivorans} Length = 294	Back alignment and structure

>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C Length = 444	Back alignment and structure

>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A Length = 511	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		980
3l1l_A		445	Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC	100.0
4djk_A		511	Probable glutamate/gamma-aminobutyrate antiporter;	100.0
3gia_A		444	Uncharacterized protein MJ0609; membrane protein,	100.0
3g40_A		294	Na-K-CL cotransporter; alpha/beta fold 10-stranded	100.0
2jln_A		501	MHP1; hydantoin, transporter, membrane protein, nu	98.26
2a65_A		519	Leutaa, Na(+):neurotransmitter symporter (SNF fami	95.48
3dh4_A		530	Sodium/glucose cotransporter; membrane protein, sy	94.95
2xq2_A		593	Sodium/glucose cotransporter; transport protein, i	91.47
3loq_A		294	Universal stress protein; structural genomics, PSI	81.21

>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A	Back alignment and structure

Probab=100.00  E-value=8.9e-43  Score=408.12  Aligned_cols=413  Identities=15%  Similarity=0.185  Sum_probs=321.9

Q ss_pred             cccccceeeeecccchhhhhhHhhhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCchhhhHHHHhC
Q 002018          130 DVKLGTLMGVFIPCLQNILGIIYYIRFTWIVGMGGIGDSLLVVAFCGSCTFLTSISLSAIATNGAMKGGGPYYLIGRALG  209 (980)
Q Consensus       130 ~~~lG~~~Gv~i~~~~~i~G~~lFl~~g~~lg~aG~~~~li~~li~~~i~~~~~ls~aElat~~~p~~GG~y~~~sr~lg  209 (980)
                      ++++|.+..+++ .+.+++|+++|...+. +..+||. ++++|++++++.++++++++|++++ +|.+||.|.|++|.+|
T Consensus         7 ~r~l~~~~~~~l-~ig~~iG~Gif~~~~~-~~~~G~~-~~~~~li~~~~~~~~a~~~~el~~~-~p~~Gg~y~~~~~~~G   82 (445)
T 3l1l_A            7 AHKVGLIPVTLM-VSGAIMGSGVFLLPAN-LASTGGI-AIYGWLVTIIGALGLSMVYAKMSFL-DPSPGGSYAYARRCFG   82 (445)
T ss_dssp             CCCBCHHHHHHH-HHHHHCSSHHHHHHHH-HHHHCTH-HHHHHHHHHHHHHHHHHHHHHHHHH-CCCTTTHHHHHHHHSC
T ss_pred             CCcccHHHHHHH-HHHhHHhhhHHhhHHH-HHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHcc-CCCCCCchhhHHhHcC
Confidence            356666666644 3445789999988776 5568886 6789999999999999999999998 9999999999999999


Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchhhhhccCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHH
Q 002018          210 PEVGVSIGLCFFLGNAVAGAMYVLGAVETFLKAVPAAGMFRETITKVNGTATPEPIQSPSLHDLQIYGIIVTIILCFIVF  289 (980)
Q Consensus       210 p~~Gf~~Gw~~~l~~~~~~a~~~~~~~~~l~~~~p~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~i~~~i~l~~~~~in~  289 (980)
                      |.+|+.+||.+++++.+..+.+..++++++...+|...                     ..+...+++++++++++++|+
T Consensus        83 ~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~in~  141 (445)
T 3l1l_A           83 PFLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPILK---------------------DPWVLTITCVVVLWIFVLLNI  141 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCGGGG---------------------SHHHHHHHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcccc---------------------ccHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999988876665320                     113345778888889999999


Q ss_pred             hhhhHHHHHhhHHHHHHHHHHHHh-hheeeecCCCCCCCCcccccccccccccCcccccCCCCCCCCCCCCchhHHHHHH
Q 002018          290 GGVKIINRVAPTFLIPVLLSIFCI-FVGILLASKDDPAPGITGLKLKTFKDNWFSDYQKTNNAGIPDPNGAVDWSFNALV  368 (980)
Q Consensus       290 ~Gvk~~~~~~~~~~~~~il~i~~i-iig~~~~~~~~~~~~~~g~~~~~~~~n~~~~f~~~~~~g~~~~~g~~~~~f~~~f  368 (980)
                      +|+|..++++.++..++++.++.+ +.++.....                +++.+.+.+.+.        ..+.+++.++
T Consensus       142 ~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~----------------~~~~~~~~~~~~--------~~~~~~~~~~  197 (445)
T 3l1l_A          142 VGPKMITRVQAVATVLALIPIVGIAVFGWFWFRG----------------ETYMAAWNVSGL--------GTFGAIQSTL  197 (445)
T ss_dssp             HCHHHHHHHHHHHHHHHHHHHHHHHHTTSTTCCC----------------CCCCCC-------------------HHHHH
T ss_pred             hchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh----------------hhcccccCccCC--------ccHHHHHHHH
Confidence            999999999999999988887744 444332111                112122221110        0134588889


Q ss_pred             HHHHHhhHHHHHHhhhcccccccccchhHHHHHHHHHHHHHHHHHHHHHhhccchhhhhh--hhhh---HhhccCchHHH
Q 002018          369 GLFFPAVTGIMAGSNRSASLKDTQRSIPIGTLAATLTTTALYVISVLLFGAAATREELLT--DRLL---TATIAWPFPAV  443 (980)
Q Consensus       369 ~~~~~a~tG~ea~a~~a~E~knP~ksIP~a~~~si~~~~v~Yil~~~~~g~~~~~~~~~~--~~~~---~~~~~~~~~~i  443 (980)
                      ...+|+|+|+|.++++++|+|||+|++|||++.++.+++++|++..+.+....|.+++..  +++.   ....+.....+
T Consensus       198 ~~~~~af~G~e~~~~~~~e~k~p~r~ip~a~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~~  277 (445)
T 3l1l_A          198 NVTLWSFIGVESASVAAGVVKNPKRNVPIATIGGVLIAAVCYVLSTTAIMGMIPNAALRVSASPFGDAARMALGDTAGAI  277 (445)
T ss_dssp             HHHHHTTTTTTHHHHGGGGBSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTTSCSTTCTHHHHHHHHHCTTHHHH
T ss_pred             HHHHHHHHhHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhccCcHHHHHHHHHhhHHHHHH
Confidence            999999999999999999999999999999999999999999998777777777665432  2332   22344556789


Q ss_pred             HHHHHHHHHHHHHHHHhhhhHHHHHHHhcCCCCCccceeecCCCCCchhhHHHHHHHHhhhhcc-------ccccchhhh
Q 002018          444 IHIGIILSTLGAALQSLTGAPRLLAAIANDDILPVLNYFKVAEGREPHIATFFTAFICIGCVII-------GNLDLITPT  516 (980)
Q Consensus       444 i~~~il~s~lss~~s~l~~asR~L~alArDg~lP~~~~~~~~~~g~P~~Aill~~~i~~l~~l~-------~~~~~l~~i  516 (980)
                      +.++++++++++.++.+++++|++++|||||.+|++ +.+++|+++|++|++++++++.++.++       ..++.+.++
T Consensus       278 ~~~~~~~~~~~~~~~~~~~~sR~~~~~a~dg~lP~~-~~~~~~~~~P~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  356 (445)
T 3l1l_A          278 VSFCAAAGCLGSLGGWTLLAGQTAKAAADDGLFPPI-FARVNKAGTPVAGLIIVGILMTIFQLSSISPNATKEFGLVSSV  356 (445)
T ss_dssp             HHHHHHHHHTTTHHHHHHHHHHHHHHHHHTTSSCGG-GGCCCTTCCCHHHHHHHHHHHHHHHHSTTSHHHHCCCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcHH-HHhcCCCCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence            999999999999999999999999999999999986 777788999999999999877655443       347889999


Q ss_pred             hHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCccchhhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhhheeeeeCC
Q 002018          517 ITMFFLLCYSGVNLSCFLLDLLDAPSWRPRWKFHHWSLSLLGSVFCIVIMFLISWS---FTVVSLALASLIYYYVCLKGK  593 (980)
Q Consensus       517 ~s~~~ll~y~~i~la~~~~r~~~~p~~r~~f~~~~~~~~l~g~i~~~~~~~~~~~~---~~~~~l~i~~~l~~~~~~~~~  593 (980)
                      .++..+++|.+++++++++|++ .|  +++++ ..++++++|.+.|+++++..++.   ...+++++++++|++.+++++
T Consensus       357 ~~~~~~~~y~~~~~~~~~~r~~-~~--~~r~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~~~~~~~  432 (445)
T 3l1l_A          357 SVIFTLVPYLYTCAALLLLGHG-HF--GKARP-AYLAVTTIAFLYCIWAVVGSGAKEVMWSFVTLMVITAMYALNYNRLH  432 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSS-SS--GGGCT-TTHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHSTTC
T ss_pred             HHHHHHHHHHHHHHHHHHHhhc-Cc--ccccc-hhHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence            9999999999999999999984 44  33332 34578889999999888776544   345567777777777665554


Q ss_pred             CCC
Q 002018          594 AGD  596 (980)
Q Consensus       594 ~~~  596 (980)
                      ++.
T Consensus       433 ~~~  435 (445)
T 3l1l_A          433 KNP  435 (445)
T ss_dssp             CCS
T ss_pred             cCc
Confidence            443

PyMOL of 3l1l

>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A	Back alignment and structure

>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C	Back alignment and structure

>3g40_A Na-K-CL cotransporter; alpha/beta fold 10-stranded twisted beta sheet, transport protein; 1.90A {Methanosarcina acetivorans}	Back alignment and structure

>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A	Back alignment and structure

>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ...	Back alignment and structure

>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus}	Back alignment and structure

>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A	Back alignment and structure

>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		980
d2a65a1		509	Na(+):neurotransmitter symporter homologue LeuT {A	88.38

>d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter homologue LeuT {Aquifex aeolicus [TaxId: 63363]}	Back information, alignment and structure

class: Membrane and cell surface proteins and peptides
fold: SNF-like
superfamily: SNF-like
family: SNF-like
domain: Na(+):neurotransmitter symporter homologue LeuT
species: Aquifex aeolicus [TaxId: 63363]

Probab=88.38  E-value=19  Score=38.72  Aligned_cols=36  Identities=14%  Similarity=0.023  Sum_probs=24.2

Q ss_pred             chHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhcCC
Q 002018          439 PFPAVIHIGIILSTLGAALQSLTGAPRLLAAIANDD  474 (980)
Q Consensus       439 ~~~~ii~~~il~s~lss~~s~l~~asR~L~alArDg  474 (980)
                      +.+.+..+.-++..+.+++++..+.--...+.-+|.
T Consensus       331 ~~~~~~~~lFF~~l~~~gl~s~i~~~e~~v~~l~d~  366 (509)
T d2a65a1         331 AGGTFLGFLWFFLLFFAGLTSSIAIMQPMIAFLEDE  366 (509)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CcchhHHHHHHHHHHHHHHHHHhccccchhHHHHHh
Confidence            445666666666666777777777777777766774

PyMOL of d2a65a1