Citrus Sinensis ID: 002025

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------98
MPPSRYRGKKAMEIEHSKVREQFFATYGRHIQNVNRQCFGPQSAFFRQLFFFFNARNVSDISVLVETCRLMKHFVQESGDVVGLFAGIDYSSKRALVDFRVKKFAFACIQAVHQNRKELKDQLFVTPEESNTPPTLLLEAVVFLIDSRLPWTCKVVSYLLERNVFTLLRELIVTGKESMEIHSSYGRISSLERVLTLIIPHIGQKPCICPNIDPRWSFFSQILTIPFLWHLFPYIKEVFATGRTSQHYIHQMALCVQNHANVLPHEVSMELPGYACLLGNILETAGVALSQPDCSFEMGVDLAAITTFLLKALPPIKSSRESSMVSDDDMTAGDEVMEPVINRDLEKQITSAIDSRFLLQLTNVLFSGFHLLRGPHDEGPGDKEVAAVGAACAFLHVAFNTLPLECIMTVLAYRTELVQLLWHYMKRCHEIRKWPFLPYLSGDAPGWLLPLAVFCPVYKHMLTIVDNEEFYEQEKPLSLKDIRHLIVILREALWHLLWLNPTSHPNVGKSVSSPPPANKMLPAEAIQHRVSTVASEVLSQLQDWNNRREFVPPSDFHADGVNDFFISQATIDGTRANEILKQAPFLVPFTSRAKIFQSQLASVRQRHGSHGVFTRSRFRIRRDHILEDAYSQMSTMSEEDLRGAIRVTFVNELGVEEAGIDGGGIFKDFMENITRAAFDVQYGLFKETSDHLLYPNPGSGMIHEQHLQFFHFLGILLAKAMFEGILVDIPFATFFLSKLKQKYNYLNDLPSLDPELYRHLIFLKHYEADISELELYFVILNNEYGEQTEEELLPGGKNIRVTNENVITFIHLVSNHRLNFQIRQQSSHFLRGFQQLIQKDWIDMFNEHELQLLISGSLDSLDFDDLRQNTNYVGGYHSEHYVIEMFWEVLKSFSLENQKKFLKFVTGCSRGPLLGFKYLEPLFCIQRAAGSASEEALDRLPTSATCMNLLKLPPYRSKEQMSTKLLYAINAEAGFDLS
cccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHEEccccccHHHHHHHHHHHHHHHHHHccccEEEEEEEEcccccHHHHHHHHHHHHHHHHHHHHcccccccccEEcccccccHHHHHHHHHHHccccccHHHHHHHHHHHHccHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHcccccccccccccccHHHHHHcccccHHHHHcHHHHHHHHHccccHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHcccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHccccccHHHHHcccccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccHHHHcccccccHHHHHHHHHHHHHHHHHHcccccccccEEEEEEccHHHHHHHHHHHcccHHHHcccEEEEEEcccccccccccccccHHHHHHHHHHHHcccccccEEEccccccccccccccccccccccHHHHHHHHHHHHHcccEEccccHHHHHHHHHcccccccccccccHHHHHHHHHHHHcccccccccEEEEEEEcccccEEEEEcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHcccHHHHHHHHccccccccHHHHHHHcccccccccccHHHHHHHHHHHcccHHHHHHcccccccccccccccccccccccccEEccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccccccc
ccccccccHHHHHHHHHHHHHHHHHHHcccccHccHHHccccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHccccEEEEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHcHcHHHHHccccccHHHHHHHHHHcccHHccccccccccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccHHHHHHHHHHccHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHcccccccccccEHHHHHHHHHHccEEEEEccHHHHHccccccHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHccccccccccccHHHHHHHHHHHHHcccccccccccccccccccEEEEEccccccccccccHHccccccccHHHHHHHHHHHHHHHHHHcccccccccEEEEEEccHHHHHHHHHHHcccHHHHccEEEEEEccccccccccccccHHHHHHHHHHHHHHcccHHccEEEccccEEEcccccccHcccHHHHHHHHHHHHHHHHHccccccccccHHHHHHHccccccHHHHHcccHHHHHHHHHHHcccccccccccEcEEccccccccccEEccccHHHcEcccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccHHHHccccHHHHHHHHHcccccccHHHHHHHcEEccccccccHHHHHHHHHHHcccHHHHHHHHHHHcccccccccHHHHHccccccEEEEEcccccccccccEEEHHHcEEEccccccHHHHHHHHHHHHHHccccccc
mppsryrgkkameIEHSKVREQFFATYGRHIqnvnrqcfgpqsaFFRQLFFFfnarnvsdISVLVETCRLMKHFVQESGDVVGLFAGIDYSSKRALVDFRVKKFAFACIQAVHQNRKELKDqlfvtpeesntpptLLLEAVVFLIDSRLPWTCKVVSYLLERNVFTLLRELIVTGKESMEIHSSYGRISSLERVLTLIIphigqkpcicpnidprwsffsqiltipflwHLFPYIKEvfatgrtsqHYIHQMALCVQNhanvlphevsmelpgYACLLGNILETagvalsqpdcsfemGVDLAAITTFLLkalppikssressmvsdddmtagdevmepvINRDLEKQITSAIDSRFLLQLTNVLFSgfhllrgphdegpgdkeVAAVGAACAFLHVAFNTLPLECIMTVLAYRTELVQLLWHYMKRCheirkwpflpylsgdapgwllplavfcpvykhmltivdneefyeqekplslkDIRHLIVILREALWHLLwlnptshpnvgksvsspppankmlpaeAIQHRVSTVASEVLSQLQDwnnrrefvppsdfhadgvndffisqatidgtraneilkqapflvpftSRAKIFQSQLASVRqrhgshgvftrsrfRIRRDHILEDAYSQMSTMSEEDLRGAIRVTFVNElgveeagidgggiFKDFMENITRAAFDVQYGlfketsdhllypnpgsgmiheQHLQFFHFLGILLAKAMFEGILVDIPFATFFLSKLKQKYNylndlpsldpeLYRHLIFLKHYEADISELELYFVILNNeygeqteeellpggknirvtNENVITFIHLVSNHRLNFQIRQQSSHFLRGFQQLIQKDWIDMFNEHELQLLIsgsldsldfddlrqntnyvggyhsEHYVIEMFWEVLKSFSLENQKKFLKFVtgcsrgpllgfkylepLFCIQRAAgsaseealdrlptsatcmnllklppyrskeqMSTKLLYAINAEAGFDLS
mppsryrgkkameiehSKVREQFFATYGRHIQNVNRQCFGPQSAFFRQLFFFFNARNVSDISVLVETCRLMKHFVQESGDVVGLFAGIDYSSKRALVDFRVKKFAFACIQAVHQNRKELKDQLFVTpeesntpptLLLEAVVFLIDSRLPWTCKVVSYLLERNVFTLLRELIVTGKESMEIHSSYGRISSLERVLTLIIPHIGQKPCICPNIDPRWSFFSQILTIPFLWHLFPYIKEVFATGRTSQHYIHQMALCVQNHANVLPHEVSMELPGYACLLGNILETAGVALSQPDCSFEMGVDLAAITTFLLKAlppikssressmvsdddmtagDEVMEPVINRDLEKQITSAIDSRFLLQLTNVLFSGFHLLRGPHDEGPGDKEVAAVGAACAFLHVAFNTLPLECIMTVLAYRTELVQLLWHYMKRCHEIRKWPFLPYLSGDAPGWLLPLAVFCPVYKHMLTIVDNEEFYEQEKPLSLKDIRHLIVILREALWHLLWLNPTSHPNVGKSVSSPPPANKMLPAEAIQHRVSTVASEVLSQLQDWNNRREFVPPSDFHADGVNDFFISQATIDGTRANEILKQAPFLVPFTSRAKIFQSQLasvrqrhgshgvftrsrfrirrDHILEDAYSQMSTMSEEDLRGAIRVTFVNELGVEEAGIDGGGIFKDFMENITRAAFDVQYGLFKETSDHLLYPNPGSGMIHEQHLQFFHFLGILLAKAMFEGILVDIPFATFFLSKLKQKYNYLNDLPSLDPELYRHLIFLKHYEADISELELYFVILNNEYGEQTEEELLPGGKNIRVTNENVITFIHLVSNHRLNFQIRQQSSHFLRGFQQLIQKDWIDMFNEHELQLLISGSLDSLDFDDLRQNTNYVGGYHSEHYVIEMFWEVLKSFSLENQKKFLKFVTGCSRGPLLGFKYLEPLFCIQRAAGSASEEAldrlptsatcmnllklppyrskeqMSTKLLYAINaeagfdls
MPPSRYRGKKAMEIEHSKVREQFFATYGRHIQNVNRQCFGPQSAffrqlffffNARNVSDISVLVETCRLMKHFVQESGDVVGLFAGIDYSSKRALVDFRVKKFAFACIQAVHQNRKELKDQLFVTPEESNTPPTLLLEAVVFLIDSRLPWTCKVVSYLLERNVFTLLRELIVTGKESMEIHSSYGRISSLERVLTLIIPHIGQKPCICPNIDPRWSFFSQILTIPFLWHLFPYIKEVFATGRTSQHYIHQMALCVQNHANVLPHEVSMELPGYACLLGNILETAGVALSQPDCSFEMGVDLAAITTFLLKALPPIKSSRESSMVSDDDMTAGDEVMEPVINRDLEKQITSAIDSRFLLQLTNVLFSGFHLLRGPHDEGPGDKEVAAVGAACAFLHVAFNTLPLECIMTVLAYRTELVQLLWHYMKRCHEIRKWPFLPYLSGDAPGWLLPLAVFCPVYKHMLTIVDNEEFYEQEKPLSLKDIRHLIVILREALWHLLWLNPTSHPNVGKSVSSPPPANKMLPAEAIQHRVSTVASEVLSQLQDWNNRREFVPPSDFHADGVNDFFISQATIDGTRANEILKQAPFLVPFTSRAKIFQSQLASVRQRHGSHGVFTRSRFRIRRDHILEDAYSQMSTMSEEDLRGAIRVTFVNELGVEEAGIDGGGIFKDFMENITRAAFDVQYGLFKETSDHLLYPNPGSGMIHEQHLQFFHFLGILLAKAMFEGILVDIPFATFFLSKLKQKYNYLNDLPSLDPELYRHLIFLKHYEADISELELYFVILNNEYGEQTEEELLPGGKNIRVTNENVITFIHLVSNHRLNFQIRQQSSHFLRGFQQLIQKDWIDMFNEHElqllisgsldsldfddlRQNTNYVGGYHSEHYVIEMFWEVLKSFSLENQKKFLKFVTGCSRGPLLGFKYLEPLFCIQRAAGSASEEALDRLPTSATCMNLLKLPPYRSKEQMSTKLLYAINAEAGFDLS
******************VREQFFATYGRHIQNVNRQCFGPQSAFFRQLFFFFNARNVSDISVLVETCRLMKHFVQESGDVVGLFAGIDYSSKRALVDFRVKKFAFACIQAVHQNRKELKDQLFVT******PPTLLLEAVVFLIDSRLPWTCKVVSYLLERNVFTLLRELIVTGKESMEIHSSYGRISSLERVLTLIIPHIGQKPCICPNIDPRWSFFSQILTIPFLWHLFPYIKEVFATGRTSQHYIHQMALCVQNHANVLPHEVSMELPGYACLLGNILETAGVALSQPDCSFEMGVDLAAITTFLLKAL***************************INRDLEKQITSAIDSRFLLQLTNVLFSGFHLLRGPHD****DKEVAAVGAACAFLHVAFNTLPLECIMTVLAYRTELVQLLWHYMKRCHEIRKWPFLPYLSGDAPGWLLPLAVFCPVYKHMLTIVDNEEFYEQEKPLSLKDIRHLIVILREALWHLLWLNP*******************************VASEVLSQLQDWNNRREFVPPSDFHADGVNDFFISQATIDGTRANEILKQAPFLVPFTSRAKIFQSQLASVRQRHGSHGVFTRSRFRIRRDHILEDAYS********DLRGAIRVTFVNELGVEEAGIDGGGIFKDFMENITRAAFDVQYGLFKETSDHLLYPNPGSGMIHEQHLQFFHFLGILLAKAMFEGILVDIPFATFFLSKLKQKYNYLNDLPSLDPELYRHLIFLKHYEADISELELYFVILNNEYGEQTEEELLPGGKNIRVTNENVITFIHLVSNHRLNFQIRQQSSHFLRGFQQLIQKDWIDMFNEHELQLLISGSLDSLDFDDLRQNTNYVGGYHSEHYVIEMFWEVLKSFSLENQKKFLKFVTGCSRGPLLGFKYLEPLFCIQRAAG************SATCMNLLKLP**********KLLYAIN********
***SRYR*KKAMEIEHSKVREQFFATYGRHIQNVNRQCFGPQSAFFRQLFFFFNARNVSDISVLVETCRLMKHFVQESGDVVGLFAGIDYSSKRALVDFRVKKFAFACIQAVHQNRKELKDQLFVTPEESNTPPTLLLEAVVFLIDSRLPWTCKVVSYLLERNVFTLLRELIVTGK**************LERVLTLIIPHIGQKPCICPNIDPRWSFFSQILTIPFLWHLFPYIKEVFATGRTSQHYIHQMALCVQNHANVLPHEVSMELPGYACLLGNILETAGVALSQPDCSFEMGVDLAAITTFLLKA**************************************SAIDSRFLLQLTNVLFSGF*****************AVGAACAFLHVAFNTLPLECIMTVLAYRTELVQLLWHYMKRC*****************GWLLPLAVFCPVYKHMLTIVDNEEFYEQEKPLSLKDIRHLIVILREALWHLLWLNPTS********************************EVLSQLQDWNNRREFVPPSDFHADGVND***************ILKQAPFLVPFTSRAKIFQSQLA****************FRIRRDHILEDAYSQMSTMSEEDLRGAIRVTFVNELGVEEAGIDGGGIFKDFMENITRAAFDVQYGLFKETSDHLLYPNPGSGMIHEQHLQFFHFLGILLAKAMFEGILVDIPFATFFLSKLKQKYNYLNDLPSLDPELYRHLIFLKHYEADISELELYFVILNNEYGEQTEEELLPGGKNIRVTNENVITFIHLVSNHRLNFQIRQQSSHFLRGFQQLIQKDWIDMFNEHELQLLISGSLDSLDFDDLRQNTNYVGGYHSEHYVIEMFWEVLKSFSLENQKKFLKFVTGCSRGPLLGFKYLEPLFCIQRAAGSASEEALDRLPTSATCMNLLKLPPYRSKEQMSTKLLYAINAEAGFDLS
*********KAMEIEHSKVREQFFATYGRHIQNVNRQCFGPQSAFFRQLFFFFNARNVSDISVLVETCRLMKHFVQESGDVVGLFAGIDYSSKRALVDFRVKKFAFACIQAVHQNRKELKDQLFVTPEESNTPPTLLLEAVVFLIDSRLPWTCKVVSYLLERNVFTLLRELIVTGKESMEIHSSYGRISSLERVLTLIIPHIGQKPCICPNIDPRWSFFSQILTIPFLWHLFPYIKEVFATGRTSQHYIHQMALCVQNHANVLPHEVSMELPGYACLLGNILETAGVALSQPDCSFEMGVDLAAITTFLLKALPPIK*************TAGDEVMEPVINRDLEKQITSAIDSRFLLQLTNVLFSGFHLLRGPHDEGPGDKEVAAVGAACAFLHVAFNTLPLECIMTVLAYRTELVQLLWHYMKRCHEIRKWPFLPYLSGDAPGWLLPLAVFCPVYKHMLTIVDNEEFYEQEKPLSLKDIRHLIVILREALWHLLWLNPTSHP**********PANKMLPAEAIQHRVSTVASEVLSQLQDWNNRREFVPPSDFHADGVNDFFISQATIDGTRANEILKQAPFLVPFTSRAKIFQS************GVFTRSRFRIRRDHILEDAYSQMSTMSEEDLRGAIRVTFVNELGVEEAGIDGGGIFKDFMENITRAAFDVQYGLFKETSDHLLYPNPGSGMIHEQHLQFFHFLGILLAKAMFEGILVDIPFATFFLSKLKQKYNYLNDLPSLDPELYRHLIFLKHYEADISELELYFVILNNEYGEQTEEELLPGGKNIRVTNENVITFIHLVSNHRLNFQIRQQSSHFLRGFQQLIQKDWIDMFNEHELQLLISGSLDSLDFDDLRQNTNYVGGYHSEHYVIEMFWEVLKSFSLENQKKFLKFVTGCSRGPLLGFKYLEPLFCIQRAAGSASEEALDRLPTSATCMNLLKLPPYRSKEQMSTKLLYAINAEAGFDLS
********KK*MEIEHSKVREQFFATYGRHIQNVNRQCFGPQSAFFRQLFFFFNARNVSDISVLVETCRLMKHFVQESGDVVGLFAGIDYSSKRALVDFRVKKFAFACIQAVHQNRKELKDQLFVTPEESNTPPTLLLEAVVFLIDSRLPWTCKVVSYLLERNVFTLLRELIVTGKESMEIHSSYGRISSLERVLTLIIPHIGQKPCICPNIDPRWSFFSQILTIPFLWHLFPYIKEVFATGRTSQHYIHQMALCVQNHANVLPHEVSMELPGYACLLGNILETAGVALSQPDCSFEMGVDLAAITTFLLKALPPI********************MEPVINRDLEKQITSAIDSRFLLQLTNVLFSGFHLLRGPHDEGPGDKEVAAVGAACAFLHVAFNTLPLECIMTVLAYRTELVQLLWHYMKRCHEIRKWPFLPYLSGDAPGWLLPLAVFCPVYKHMLTIVDNEEFYEQEKPLSLKDIRHLIVILREALWHLLWLNPTSHPNVGKSVSSPPPANKMLPAEAIQHRVSTVASEVLSQLQDWNNRREFVPPSDFHADGVNDFFISQATIDGTRANEILKQAPFLVPFTSRAKIFQSQLASVRQRHGSHGVFTRSRFRIRRDHILEDAYSQMSTMSEEDLRGAIRVTFVNELGVEEAGIDGGGIFKDFMENITRAAFDVQYGLFKETSDHLLYPNPGSGMIHEQHLQFFHFLGILLAKAMFEGILVDIPFATFFLSKLKQKYNYLNDLPSLDPELYRHLIFLKHYEADISELELYFVILNNEYGEQTEEELLPGGKNIRVTNENVITFIHLVSNHRLNFQIRQQSSHFLRGFQQLIQKDWIDMFNEHELQLLISGSLDSLDFDDLRQNTNYVGGYHSEHYVIEMFWEVLKSFSLENQKKFLKFVTGCSRGPLLGFKYLEPLFCIQRAAGSASEEALDRLPTSATCMNLLKLPPYRSKEQMSTKLLYAINAEA*****
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MPPSRYRGKKAMEIEHSKVREQFFATYGRHIQNVNRQCFGPQSAFFRQLFFFFNARNVSDISVLVETCRLMKHFVQESGDVVGLFAGIDYSSKRALVDFRVKKFAFACIQAVHQNRKELKDQLFVTPEESNTPPTLLLEAVVFLIDSRLPWTCKVVSYLLERNVFTLLRELIVTGKESMEIHSSYGRISSLERVLTLIIPHIGQKPCICPNIDPRWSFFSQILTIPFLWHLFPYIKEVFATGRTSQHYIHQMALCVQNHANVLPHEVSMELPGYACLLGNILETAGVALSQPDCSFEMGVDLAAITTFLLKALPPIKSSRESSMVSDDDMTAGDEVMEPVINRDLEKQITSAIDSRFLLQLTNVLFSGFHLLRGPHDEGPGDKEVAAVGAACAFLHVAFNTLPLECIMTVLAYRTELVQLLWHYMKRCHEIRKWPFLPYLSGDAPGWLLPLAVFCPVYKHMLTIVDNEEFYEQEKPLSLKDIRHLIVILREALWHLLWLNPTSHPNVGKSVSSPPPANKMLPAEAIQHRVSTVASEVLSQLQDWNNRREFVPPSDFHADGVNDFFISQATIDGTRANEILKQAPFLVPFTSRAKIFQSQLASVRQRHGSHGVFTRSRFRIRRDHILEDAYSQMSTMSEEDLRGAIRVTFVNELGVEEAGIDGGGIFKDFMENITRAAFDVQYGLFKETSDHLLYPNPGSGMIHEQHLQFFHFLGILLAKAMFEGILVDIPFATFFLSKLKQKYNYLNDLPSLDPELYRHLIFLKHYEADISELELYFVILNNEYGEQTEEELLPGGKNIRVTNENVITFIHLVSNHRLNFQIRQQSSHFLRGFQQLIQKDWIDMFNEHELQLLISGSLDSLDFDDLRQNTNYVGGYHSEHYVIEMFWEVLKSFSLENQKKFLKFVTGCSRGPLLGFKYLEPLFCIQRAAGSASEEALDRLPTSATCMNLLKLPPYRSKEQMSTKLLYAINAEAGFDLS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query978 2.2.26 [Sep-21-2011]
Q8RWB81029 E3 ubiquitin-protein liga yes no 0.989 0.940 0.715 0.0
Q153861083 Ubiquitin-protein ligase yes no 0.601 0.542 0.349 1e-103
Q80U951083 Ubiquitin-protein ligase yes no 0.755 0.682 0.322 1e-103
Q7Z3V41068 Ubiquitin-protein ligase no no 0.579 0.530 0.358 1e-101
Q08CZ01072 Ubiquitin-protein ligase no no 0.595 0.542 0.356 1e-101
Q9ES341070 Ubiquitin-protein ligase no no 0.579 0.529 0.357 1e-100
Q9SCQ21142 E3 ubiquitin-protein liga no no 0.526 0.450 0.365 6e-97
Q1K9C41029 Probable E3 ubiquitin pro yes no 0.536 0.510 0.368 2e-92
P53119910 Probable E3 ubiquitin-pro yes no 0.397 0.427 0.405 2e-71
Q8GY233681 E3 ubiquitin-protein liga no no 0.390 0.103 0.394 6e-68
>sp|Q8RWB8|UPL6_ARATH E3 ubiquitin-protein ligase UPL6 OS=Arabidopsis thaliana GN=UPL6 PE=2 SV=1 Back     alignment and function desciption
 Score = 1471 bits (3809), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 700/979 (71%), Positives = 807/979 (82%), Gaps = 11/979 (1%)

Query: 6    YRGKKAMEIEHSKVREQFFATYGRHIQNVNRQCFGPQSAFFRQLFFFFNARNVSDISVLV 65
            +RG+++M IE SKVR  F  TYG + QNV+R CF P S+F RQ  FFF A+N  D  +LV
Sbjct: 56   FRGRRSMAIERSKVRHDFCETYGNNCQNVDRHCFEPGSSFLRQFLFFFKAQNSGDFVILV 115

Query: 66   ETCRLMKHFVQESGDVVGLFAGIDYSSKRALVDFRVKKFAFACIQAVHQNRKELKDQLFV 125
            ETCRL++ FV  SGD+V LF+G+DYSS+  LVDFRVKK AF CI+A+HQNR  L+DQL V
Sbjct: 116  ETCRLLQSFVDSSGDIVSLFSGLDYSSEHNLVDFRVKKLAFTCIEAIHQNRNRLRDQLLV 175

Query: 126  TPEESNTPPTLLLEAVVFLIDSRLPWTCKVVSYLLERNVFTLLRELIVTGKESMEIHSSY 185
            TPEE++    +L+EAV  L+D +LPW CK+VSYL +R VF L+RE++ T KES    +  
Sbjct: 176  TPEEASISTAILMEAVSLLLDPKLPWVCKIVSYLQKRKVFKLVREMVTTAKESPRGKTMT 235

Query: 186  GRISSLERVLTLIIPHIGQKPCICPNIDPRWSFFSQILTIPFLWHLFPYIKEVFATGRTS 245
            G I SLERVL LI+PHIG++PC C  +DPRWSF S ILTIP +W LFP +K VFA    S
Sbjct: 236  GNILSLERVLILIVPHIGREPCCCTVVDPRWSFSSMILTIPLIWKLFPNLKVVFANPSLS 295

Query: 246  QHYIHQMALCVQNHANVLPHEVSMELPGYACLLGNILETAGVALSQPDCSFEMGVDLAAI 305
            QHYIHQMA C+Q    VLP E S E PGYACLLGN L+TA V LSQP+CS +M +D+A +
Sbjct: 296  QHYIHQMASCIQKDTCVLPMETSPEFPGYACLLGNTLDTANVVLSQPECSLDMAIDIALV 355

Query: 306  TTFLLKALPPIKSSRESSM--VSDDDMTAGDEVMEPVINRDLEKQITSAIDSRFLLQLTN 363
             TF L+ LPP+KSS   S    SD+D    D+V   V+N+ LE+QIT+AIDSRFLLQLTN
Sbjct: 356  ATFFLETLPPVKSSEGESRQGSSDEDDMLIDDVPGLVLNKALEQQITNAIDSRFLLQLTN 415

Query: 364  VLFSGFHLLRGPHDEGPGDKEVAAVGAACAFLHVAFNTLPLECIMTVLAYRTELVQLLWH 423
            VLF    L    +DE   DKE  A+G A +FL+ AFNTLPLE IMT+LAYRTELV +LW+
Sbjct: 416  VLFRQVSLGMQSYDE---DKEALAIGTASSFLYAAFNTLPLERIMTILAYRTELVAVLWN 472

Query: 424  YMKRCHEIRKWPFLP----YLSGDAPGWLLPLAVFCPVYKHMLTIVDNEEFYEQEKPLSL 479
            YMKRCHE +KW  +P    YL GDAPGWLLPL VFCPVYKHML IVDNEEFYE+EKPLSL
Sbjct: 473  YMKRCHENQKWSSMPKLLAYLPGDAPGWLLPLVVFCPVYKHMLMIVDNEEFYEREKPLSL 532

Query: 480  KDIRHLIVILREALWHLLWLNPTSHPNVGKSVSSPPPANKMLPAEAIQHRVSTVASEVLS 539
            +DIR LI+IL++ALW LLW+NP + PN GKSVS+    +K  P E IQ+R+  V SE+LS
Sbjct: 533  QDIRLLIIILKQALWQLLWVNPLTQPNTGKSVSND--LSKKNPIELIQNRMGIVVSELLS 590

Query: 540  QLQDWNNRREFVPPSDFHADGVNDFFISQATIDGTRANEILKQAPFLVPFTSRAKIFQSQ 599
            QLQDWNNR++F   SDF AD VN++FISQA ++GTRAN IL QAPFL+PFTSR KIF +Q
Sbjct: 591  QLQDWNNRKQFTSSSDFQADSVNEYFISQAIMEGTRANYILMQAPFLIPFTSRVKIFTTQ 650

Query: 600  LASVRQRHGSHGVFTRSRFRIRRDHILEDAYSQMSTMSEEDLRGAIRVTFVNELGVEEAG 659
            LA+ RQ HGS G+F R+RFRIRRDHILEDAY+QMS +SE+DLR +IRVTFVNELGVEEAG
Sbjct: 651  LATARQSHGSQGIFARNRFRIRRDHILEDAYNQMSALSEDDLRSSIRVTFVNELGVEEAG 710

Query: 660  IDGGGIFKDFMENITRAAFDVQYGLFKETSDHLLYPNPGSGMIHEQHLQFFHFLGILLAK 719
            IDGGGIFKDFME ITRAAFDVQYGLFKET+DH+LYPNPGSGMIHEQHLQFFHFLG LLAK
Sbjct: 711  IDGGGIFKDFMEKITRAAFDVQYGLFKETADHMLYPNPGSGMIHEQHLQFFHFLGSLLAK 770

Query: 720  AMFEGILVDIPFATFFLSKLKQKYNYLNDLPSLDPELYRHLIFLKHYEADISELELYFVI 779
            AMFEGILVDIPFATFFLSKLKQKYNYLNDLPSLDPELYRHLIFLK Y+ DIS+LELYFVI
Sbjct: 771  AMFEGILVDIPFATFFLSKLKQKYNYLNDLPSLDPELYRHLIFLKRYKGDISDLELYFVI 830

Query: 780  LNNEYGEQTEEELLPGGKNIRVTNENVITFIHLVSNHRLNFQIRQQSSHFLRGFQQLIQK 839
            LNNEYGE+TEEELLPGG+++RVTNENVITFIHLVSNHRLNFQIRQQSSHFLRGFQQLI K
Sbjct: 831  LNNEYGERTEEELLPGGQDMRVTNENVITFIHLVSNHRLNFQIRQQSSHFLRGFQQLIPK 890

Query: 840  DWIDMFNEHELQLLISGSLDSLDFDDLRQNTNYVGGYHSEHYVIEMFWEVLKSFSLENQK 899
            +WIDMFNEHELQ+LISGS+DSLD DDLR NTNY GGYH+ HYVI+MFWEV+KSFS ENQK
Sbjct: 891  EWIDMFNEHELQVLISGSVDSLDIDDLRNNTNYAGGYHAGHYVIDMFWEVMKSFSTENQK 950

Query: 900  KFLKFVTGCSRGPLLGFKYLEPLFCIQRAAGSASEEALDRLPTSATCMNLLKLPPYRSKE 959
            KFLKFVTGCSRGPLLGFKYLEP FCIQRAAGSAS E++DRLPTSATCMNLLKLPPY+SKE
Sbjct: 951  KFLKFVTGCSRGPLLGFKYLEPAFCIQRAAGSASNESVDRLPTSATCMNLLKLPPYQSKE 1010

Query: 960  QMSTKLLYAINAEAGFDLS 978
             + TKL+YAI+AEAGFDLS
Sbjct: 1011 LLETKLMYAISAEAGFDLS 1029
Probable E3 ubiquitin-protein ligase which mediates ubiquitination and subsequent proteasomal degradation of target proteins.
Arabidopsis thaliana (taxid: 3702)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -
>sp|Q15386|UBE3C_HUMAN Ubiquitin-protein ligase E3C OS=Homo sapiens GN=UBE3C PE=1 SV=3 Back     alignment and function description
>sp|Q80U95|UBE3C_MOUSE Ubiquitin-protein ligase E3C OS=Mus musculus GN=Ube3c PE=2 SV=2 Back     alignment and function description
>sp|Q7Z3V4|UBE3B_HUMAN Ubiquitin-protein ligase E3B OS=Homo sapiens GN=UBE3B PE=1 SV=3 Back     alignment and function description
>sp|Q08CZ0|UBE3B_XENTR Ubiquitin-protein ligase E3B OS=Xenopus tropicalis GN=ube3b PE=2 SV=1 Back     alignment and function description
>sp|Q9ES34|UBE3B_MOUSE Ubiquitin-protein ligase E3B OS=Mus musculus GN=Ube3b PE=2 SV=3 Back     alignment and function description
>sp|Q9SCQ2|UPL7_ARATH E3 ubiquitin-protein ligase UPL7 OS=Arabidopsis thaliana GN=UPL7 PE=2 SV=1 Back     alignment and function description
>sp|Q1K9C4|YFK7_SCHPO Probable E3 ubiquitin protein ligase C167.07c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC167.07c PE=2 SV=1 Back     alignment and function description
>sp|P53119|HUL5_YEAST Probable E3 ubiquitin-protein ligase HUL5 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=HUL5 PE=1 SV=1 Back     alignment and function description
>sp|Q8GY23|UPL1_ARATH E3 ubiquitin-protein ligase UPL1 OS=Arabidopsis thaliana GN=UPL1 PE=1 SV=3 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query978
3594770931034 PREDICTED: E3 ubiquitin-protein ligase U 0.989 0.936 0.758 0.0
3594770951016 PREDICTED: E3 ubiquitin-protein ligase U 0.975 0.938 0.752 0.0
2241088021027 predicted protein [Populus trichocarpa] 0.988 0.941 0.749 0.0
2978303421029 hypothetical protein ARALYDRAFT_479191 [ 0.989 0.940 0.721 0.0
3565559691031 PREDICTED: E3 ubiquitin-protein ligase U 0.989 0.938 0.724 0.0
3565217191026 PREDICTED: E3 ubiquitin-protein ligase U 0.990 0.944 0.721 0.0
2555564921067 ubiquitin-protein ligase, putative [Rici 0.968 0.887 0.758 0.0
794052971029 E3 ubiquitin-protein ligase UPL6 [Arabid 0.989 0.940 0.715 0.0
1865101631015 E3 ubiquitin-protein ligase UPL6 [Arabid 0.977 0.941 0.711 0.0
3565649801026 PREDICTED: E3 ubiquitin-protein ligase U 0.990 0.944 0.714 0.0
>gi|359477093|ref|XP_003631936.1| PREDICTED: E3 ubiquitin-protein ligase UPL6-like isoform 1 [Vitis vinifera] gi|296083205|emb|CBI22841.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score = 1566 bits (4054), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 746/984 (75%), Positives = 848/984 (86%), Gaps = 16/984 (1%)

Query: 6    YRGKKAMEIEHSKVREQFFATYGRHIQNVNRQCFGPQSAFFRQLFFFFNARNVSDISVLV 65
            +RG+KA+E EH+KVREQFF TYGRH QNV+R  FGP S F RQL FFF+ARNV D S LV
Sbjct: 56   FRGRKAVEAEHAKVREQFFTTYGRHCQNVDRHSFGPDSEFLRQLLFFFDARNVGDFSALV 115

Query: 66   ETCRLMKHFVQESGDVVGLFAGIDYSSKRALVDFRVKKFAFACIQAVHQNRKELKDQLFV 125
            ETCRL+++FV++SGD V LFAG+DYSSK ALVD+RVK+ A+ACIQAVHQNR + K QL +
Sbjct: 116  ETCRLLQNFVRDSGDAVNLFAGMDYSSKNALVDYRVKQLAYACIQAVHQNRNQFKGQLLM 175

Query: 126  TPEESNTPPTLLLEAVVFLIDSRLPWTCKVVSYLLERNVFTLLRELIVTGKESMEIHSSY 185
            T +E ++P  LLLEAVV L+DS+LPW CK+V +LL+RN ++LLRE+++T KES+E +S+ 
Sbjct: 176  TSDEPSSPTILLLEAVVMLLDSKLPWVCKIVGHLLQRNTYSLLREIVLTAKESVETYST- 234

Query: 186  GRISSLERVLTLIIPHIGQKPCICPNIDPRWSFFSQILTIPFLWHLFPYIKEVFATGRTS 245
            GR+ SLE +LT++I H+GQ  CICP IDPRWSF SQILTIPFLW LFPY+KEVF     S
Sbjct: 235  GRVPSLECLLTILISHVGQNHCICPIIDPRWSFSSQILTIPFLWALFPYLKEVFMRRGLS 294

Query: 246  QHYIHQMALCVQNHANVLPHEVSMELPGYACLLGNILETAGVALSQPDCSFEMGVDLAAI 305
            +HYIHQMALCVQNH NVLP ++S + PGYACLLGNILETA V  SQPDCS +M +D+AA+
Sbjct: 295  EHYIHQMALCVQNHTNVLPDDISADFPGYACLLGNILETASVFFSQPDCSLDMAIDIAAV 354

Query: 306  TTFLLKALPPIKSS----RESSMVSDDDMTAGDEVMEPVINRDLEKQITSAIDSRFLLQL 361
             TFLL+ALPP+KSS    +E+S   +D+M  GDE+ME V++RDLE+QI++AID RFLLQL
Sbjct: 355  MTFLLQALPPMKSSNRESKENSSGGEDEMAVGDEIMEKVVSRDLEQQISNAIDPRFLLQL 414

Query: 362  TNVLFSGFHLLRGPHDEGPGDKEVAAVGAACAFLHVAFNTLPLECIMTVLAYRTELVQLL 421
            TN LF G  L+    +EGP D+EVAA+GAACAFLHV FN LPLE IMTVLAYRTELV LL
Sbjct: 415  TNALFGGISLINHLCEEGPDDREVAAIGAACAFLHVTFNILPLERIMTVLAYRTELVPLL 474

Query: 422  WHYMKRCHEIRKWPFL----PYLSGDAPGWLLPLAVFCPVYKHMLTIVDNEEFYEQEKPL 477
            W ++KRCHE +KW  L     YLSGD PGW LPLAVFCPVYKHMLTIVDNEEFYEQEKPL
Sbjct: 475  WKFIKRCHENQKWSSLSEQLAYLSGDMPGWQLPLAVFCPVYKHMLTIVDNEEFYEQEKPL 534

Query: 478  SLKDIRHLIVILREALWHLLWLNPTSHPNVGKSVSSPPP---ANKMLPAEAIQHRVSTVA 534
            SL DIR LIVILR+ALW LLW+NP   PN+ K    P P   +++  P E  Q RVS V 
Sbjct: 535  SLSDIRCLIVILRQALWQLLWVNPAMPPNLMK----PAPEVTSHRGHPIEFTQQRVSIVT 590

Query: 535  SEVLSQLQDWNNRREFVPPSDFHADGVNDFFISQATIDGTRANEILKQAPFLVPFTSRAK 594
            +E+LSQLQDWNNRR+F PPS FHAD VN++FISQA I+ TRA  ILKQAPFLVPFTSR K
Sbjct: 591  AELLSQLQDWNNRRQFAPPSYFHADAVNEYFISQAVIENTRAYTILKQAPFLVPFTSRVK 650

Query: 595  IFQSQLASVRQRHGSHGVFTRSRFRIRRDHILEDAYSQMSTMSEEDLRGAIRVTFVNELG 654
            IF SQLA+ RQR GSH VFTR+RFRIRRDHILEDA++Q+S +SE+DLRG IR++FVNE G
Sbjct: 651  IFTSQLAAARQRDGSHSVFTRNRFRIRRDHILEDAFNQLSVLSEDDLRGLIRISFVNEFG 710

Query: 655  VEEAGIDGGGIFKDFMENITRAAFDVQYGLFKETSDHLLYPNPGSGMIHEQHLQFFHFLG 714
            VEEAGIDGGGIFKDFMENITRAAFDVQYGLFKET+DHLLYPNPGSGMIHEQHLQFFHFLG
Sbjct: 711  VEEAGIDGGGIFKDFMENITRAAFDVQYGLFKETADHLLYPNPGSGMIHEQHLQFFHFLG 770

Query: 715  ILLAKAMFEGILVDIPFATFFLSKLKQKYNYLNDLPSLDPELYRHLIFLKHYEADISELE 774
             +L KAMFEGILVDIPFATFFLSKLKQK+NYLNDLPSLDPELYRHLIFLKH+E D+SELE
Sbjct: 771  TVLGKAMFEGILVDIPFATFFLSKLKQKHNYLNDLPSLDPELYRHLIFLKHFEGDLSELE 830

Query: 775  LYFVILNNEYGEQTEEELLPGGKNIRVTNENVITFIHLVSNHRLNFQIRQQSSHFLRGFQ 834
            LYFVI+NNEYGEQTEEELLPGGKNIRVTNENVITFIHL++NHRLNFQIRQQS+HFLRGFQ
Sbjct: 831  LYFVIVNNEYGEQTEEELLPGGKNIRVTNENVITFIHLIANHRLNFQIRQQSTHFLRGFQ 890

Query: 835  QLIQKDWIDMFNEHELQLLISGSLDSLDFDDLRQNTNYVGGYHSEHYVIEMFWEVLKSFS 894
            QLIQ+DWI+MF+EHELQLLISGSLD LD DDLR NTNY GGYHSEHYVIE FWEVLKSF+
Sbjct: 891  QLIQRDWIEMFDEHELQLLISGSLDGLDVDDLRSNTNYAGGYHSEHYVIETFWEVLKSFT 950

Query: 895  LENQKKFLKFVTGCSRGPLLGFKYLEPLFCIQRAAGSASEEALDRLPTSATCMNLLKLPP 954
            LENQ KFLKFVTGCSRGPLLGFKYLEPLFCIQRAAGSASEEALDRLPTSATCMNLLKLPP
Sbjct: 951  LENQMKFLKFVTGCSRGPLLGFKYLEPLFCIQRAAGSASEEALDRLPTSATCMNLLKLPP 1010

Query: 955  YRSKEQMSTKLLYAINAEAGFDLS 978
            YRSKEQM+TKLLYAINA+AGFDLS
Sbjct: 1011 YRSKEQMATKLLYAINADAGFDLS 1034

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359477095|ref|XP_003631937.1| PREDICTED: E3 ubiquitin-protein ligase UPL6-like isoform 2 [Vitis vinifera] Back     alignment and taxonomy information
>gi|224108802|ref|XP_002314972.1| predicted protein [Populus trichocarpa] gi|222864012|gb|EEF01143.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|297830342|ref|XP_002883053.1| hypothetical protein ARALYDRAFT_479191 [Arabidopsis lyrata subsp. lyrata] gi|297328893|gb|EFH59312.1| hypothetical protein ARALYDRAFT_479191 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|356555969|ref|XP_003546300.1| PREDICTED: E3 ubiquitin-protein ligase UPL6-like [Glycine max] Back     alignment and taxonomy information
>gi|356521719|ref|XP_003529499.1| PREDICTED: E3 ubiquitin-protein ligase UPL6-like isoform 1 [Glycine max] Back     alignment and taxonomy information
>gi|255556492|ref|XP_002519280.1| ubiquitin-protein ligase, putative [Ricinus communis] gi|223541595|gb|EEF43144.1| ubiquitin-protein ligase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|79405297|ref|NP_188346.2| E3 ubiquitin-protein ligase UPL6 [Arabidopsis thaliana] gi|334185408|ref|NP_001189915.1| E3 ubiquitin-protein ligase UPL6 [Arabidopsis thaliana] gi|75247591|sp|Q8RWB8.1|UPL6_ARATH RecName: Full=E3 ubiquitin-protein ligase UPL6; Short=Ubiquitin-protein ligase 6 gi|20260606|gb|AAM13201.1| unknown protein [Arabidopsis thaliana] gi|37202000|gb|AAQ89615.1| At3g17205 [Arabidopsis thaliana] gi|332642397|gb|AEE75918.1| E3 ubiquitin-protein ligase UPL6 [Arabidopsis thaliana] gi|332642399|gb|AEE75920.1| E3 ubiquitin-protein ligase UPL6 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|186510163|ref|NP_001118648.1| E3 ubiquitin-protein ligase UPL6 [Arabidopsis thaliana] gi|332642398|gb|AEE75919.1| E3 ubiquitin-protein ligase UPL6 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|356564980|ref|XP_003550723.1| PREDICTED: E3 ubiquitin-protein ligase UPL6-like isoform 1 [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query978
TAIR|locus:20879391029 UPL6 "AT3G17205" [Arabidopsis 0.989 0.940 0.694 0.0
UNIPROTKB|Q5W7241030 OSJNBa0017J22.6 "Os05g0159000 0.990 0.940 0.584 7.1e-306
FB|FBgn00359531078 CG5087 [Drosophila melanogaste 0.549 0.498 0.338 3.4e-97
UNIPROTKB|F1N7031085 UBE3C "Uncharacterized protein 0.413 0.372 0.450 3.4e-97
UNIPROTKB|E1BZA81086 UBE3C "Uncharacterized protein 0.413 0.372 0.452 8.9e-97
UNIPROTKB|F1NZJ61084 UBE3C "Uncharacterized protein 0.413 0.372 0.452 1.1e-96
MGI|MGI:21409981083 Ube3c "ubiquitin protein ligas 0.413 0.373 0.445 3.8e-96
UNIPROTKB|Q153861083 UBE3C "Ubiquitin-protein ligas 0.413 0.373 0.443 1.3e-95
ZFIN|ZDB-GENE-060526-2311069 ube3b "ubiquitin protein ligas 0.547 0.500 0.342 1.6e-95
UNIPROTKB|F1PB351088 UBE3C "Uncharacterized protein 0.413 0.371 0.443 5.5e-95
TAIR|locus:2087939 UPL6 "AT3G17205" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 3565 (1260.0 bits), Expect = 0., P = 0.
 Identities = 680/979 (69%), Positives = 785/979 (80%)

Query:     6 YRGKKAMEIEHSKVREQFFATYGRHIQNVNRQCFGPQSAXXXXXXXXXNARNVSDISVLV 65
             +RG+++M IE SKVR  F  TYG + QNV+R CF P S+          A+N  D  +LV
Sbjct:    56 FRGRRSMAIERSKVRHDFCETYGNNCQNVDRHCFEPGSSFLRQFLFFFKAQNSGDFVILV 115

Query:    66 ETCRLMKHFVQESGDVVGLFAGIDYSSKRALVDFRVKKFAFACIQAVHQNRKELKDQLFV 125
             ETCRL++ FV  SGD+V LF+G+DYSS+  LVDFRVKK AF CI+A+HQNR  L+DQL V
Sbjct:   116 ETCRLLQSFVDSSGDIVSLFSGLDYSSEHNLVDFRVKKLAFTCIEAIHQNRNRLRDQLLV 175

Query:   126 TPEESNTPPTLLLEAVVFLIDSRLPWTCKVVSYLLERNVFTLLRELIVTGKESMEIHSSY 185
             TPEE++    +L+EAV  L+D +LPW CK+VSYL +R VF L+RE++ T KES    +  
Sbjct:   176 TPEEASISTAILMEAVSLLLDPKLPWVCKIVSYLQKRKVFKLVREMVTTAKESPRGKTMT 235

Query:   186 GRISSLERVLTLIIPHIGQKPCICPNIDPRWSFFSQILTIPFLWHLFPYIKEVFATGRTS 245
             G I SLERVL LI+PHIG++PC C  +DPRWSF S ILTIP +W LFP +K VFA    S
Sbjct:   236 GNILSLERVLILIVPHIGREPCCCTVVDPRWSFSSMILTIPLIWKLFPNLKVVFANPSLS 295

Query:   246 QHYIHQMALCVQNHANVLPHEVSMELPGYACLLGNILETAGVALSQPDCSFEMGVDLAAI 305
             QHYIHQMA C+Q    VLP E S E PGYACLLGN L+TA V LSQP+CS +M +D+A +
Sbjct:   296 QHYIHQMASCIQKDTCVLPMETSPEFPGYACLLGNTLDTANVVLSQPECSLDMAIDIALV 355

Query:   306 TTFLLKALPPIKSSRESSMV--SDDDMTAGDEVMEPVINRDLEKQITSAIDSRFLLQLTN 363
              TF L+ LPP+KSS   S    SD+D    D+V   V+N+ LE+QIT+AIDSRFLLQLTN
Sbjct:   356 ATFFLETLPPVKSSEGESRQGSSDEDDMLIDDVPGLVLNKALEQQITNAIDSRFLLQLTN 415

Query:   364 VLFSGFHLLRGPHDEGPGDKEVAAVGAACAFLHVAFNTLPLECIMTVLAYRTELVQLLWH 423
             VLF    L    +DE   DKE  A+G A +FL+ AFNTLPLE IMT+LAYRTELV +LW+
Sbjct:   416 VLFRQVSLGMQSYDE---DKEALAIGTASSFLYAAFNTLPLERIMTILAYRTELVAVLWN 472

Query:   424 YMKRCHEIRKWPFLP----YLSGDAPGWLLPLAVFCPVYKHMLTIVDNEEFYEQEKPLSL 479
             YMKRCHE +KW  +P    YL GDAPGWLLPL VFCPVYKHML IVDNEEFYE+EKPLSL
Sbjct:   473 YMKRCHENQKWSSMPKLLAYLPGDAPGWLLPLVVFCPVYKHMLMIVDNEEFYEREKPLSL 532

Query:   480 KDIRHLIVILREALWHLLWLNPTSHPNVGKSVSSPPPANKMLPAEAIQHRVSTVASEVLS 539
             +DIR LI+IL++ALW LLW+NP + PN GKSVS+    +K  P E IQ+R+  V SE+LS
Sbjct:   533 QDIRLLIIILKQALWQLLWVNPLTQPNTGKSVSND--LSKKNPIELIQNRMGIVVSELLS 590

Query:   540 QLQDWNNRREFVPPSDFHADGVNDFFISQATIDGTRANEILKQAPFLVPFTSRAKIFQSQ 599
             QLQDWNNR++F   SDF AD VN++FISQA ++GTRAN IL QAPFL+PFTSR KIF +Q
Sbjct:   591 QLQDWNNRKQFTSSSDFQADSVNEYFISQAIMEGTRANYILMQAPFLIPFTSRVKIFTTQ 650

Query:   600 LASVRQRHGSHGVFTRSRFRIRRDHILEDAYSQMSTMSEEDLRGAIRVTFVNELGVEEAG 659
             LA+ RQ HGS G+F R+RFRIRRDHILEDAY+QMS +SE+DLR +IRVTFVNELGVEEAG
Sbjct:   651 LATARQSHGSQGIFARNRFRIRRDHILEDAYNQMSALSEDDLRSSIRVTFVNELGVEEAG 710

Query:   660 IDGGGIFKDFMENITRAAFDVQYGLFKETSDHLLYPNPGSGMIHEQHLQFFHFLGILLAK 719
             IDGGGIFKDFME ITRAAFDVQYGLFKET+DH+LYPNPGSGMIHEQHLQFFHFLG LLAK
Sbjct:   711 IDGGGIFKDFMEKITRAAFDVQYGLFKETADHMLYPNPGSGMIHEQHLQFFHFLGSLLAK 770

Query:   720 AMFEGILVDIPFATFFLSKLKQKYNYLNDLPSLDPELYRHLIFLKHYEADISELELYFVI 779
             AMFEGILVDIPFATFFLSKLKQKYNYLNDLPSLDPELYRHLIFLK Y+ DIS+LELYFVI
Sbjct:   771 AMFEGILVDIPFATFFLSKLKQKYNYLNDLPSLDPELYRHLIFLKRYKGDISDLELYFVI 830

Query:   780 LNNEYGEQTEEELLPGGKNIRVTNENVITFIHLVSNHRLNFQIRQQSSHFLRGFQQLIQK 839
             LNNEYGE+TEEELLPGG+++RVTNENVITFIHLVSNHRLNFQIRQQSSHFLRGFQQLI K
Sbjct:   831 LNNEYGERTEEELLPGGQDMRVTNENVITFIHLVSNHRLNFQIRQQSSHFLRGFQQLIPK 890

Query:   840 DWIDMFNEHEXXXXXXXXXXXXXXXXXRQNTNYVGGYHSEHYVIEMFWEVLKSFSLENQK 899
             +WIDMFNEHE                 R NTNY GGYH+ HYVI+MFWEV+KSFS ENQK
Sbjct:   891 EWIDMFNEHELQVLISGSVDSLDIDDLRNNTNYAGGYHAGHYVIDMFWEVMKSFSTENQK 950

Query:   900 KFLKFVTGCSRGPLLGFKYLEPLFCIQRAAGSASEEALDRLPTSATCMNLLKLPPYRSKE 959
             KFLKFVTGCSRGPLLGFKYLEP FCIQRAAGSAS E++DRLPTSATCMNLLKLPPY+SKE
Sbjct:   951 KFLKFVTGCSRGPLLGFKYLEPAFCIQRAAGSASNESVDRLPTSATCMNLLKLPPYQSKE 1010

Query:   960 QMSTKLLYAINAEAGFDLS 978
              + TKL+YAI+AEAGFDLS
Sbjct:  1011 LLETKLMYAISAEAGFDLS 1029
GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS;IBA
GO:0005622 "intracellular" evidence=IEA;ISS
GO:0005634 "nucleus" evidence=ISM
GO:0006464 "cellular protein modification process" evidence=IEA;ISS
GO:0016881 "acid-amino acid ligase activity" evidence=IEA
GO:0042787 "protein ubiquitination involved in ubiquitin-dependent protein catabolic process" evidence=IBA
GO:0000151 "ubiquitin ligase complex" evidence=ISS
GO:0016567 "protein ubiquitination" evidence=ISS
UNIPROTKB|Q5W724 OSJNBa0017J22.6 "Os05g0159000 protein" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
FB|FBgn0035953 CG5087 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|F1N703 UBE3C "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E1BZA8 UBE3C "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1NZJ6 UBE3C "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
MGI|MGI:2140998 Ube3c "ubiquitin protein ligase E3C" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|Q15386 UBE3C "Ubiquitin-protein ligase E3C" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-060526-231 ube3b "ubiquitin protein ligase E3B" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1PB35 UBE3C "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q8RWB8UPL6_ARATH6, ., 3, ., 2, ., -0.71500.98970.9407yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer6.3.20.691

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query978
cd00078352 cd00078, HECTc, HECT domain; C-terminal catalytic 1e-153
smart00119328 smart00119, HECTc, Domain Homologous to E6-AP Carb 1e-117
COG5021872 COG5021, HUL4, Ubiquitin-protein ligase [Posttrans 1e-101
pfam00632298 pfam00632, HECT, HECT-domain (ubiquitin-transferas 3e-97
>gnl|CDD|238033 cd00078, HECTc, HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3) Back     alignment and domain information 
 Score =  455 bits (1174), Expect = e-153
 Identities = 172/363 (47%), Positives = 226/363 (62%), Gaps = 15/363 (4%)

Query: 617 RFRIRRDHILEDAYSQMSTMSEEDLRGAIRVTFVNELGVEEAGIDGGGIFKDFMENITRA 676
           +  +RRD ILEDA  Q+S +S  DL+  + V FV E      GID GG+ ++F   +++ 
Sbjct: 2   KITVRRDRILEDALRQLSKVSSSDLKKVLEVEFVGE-----EGIDAGGVTREFFTLVSKE 56

Query: 677 AFDVQYGLFKETSD--HLLYPNPGSGMIHEQHLQFFHFLGILLAKAMFEGILVDIPFATF 734
            F+  YGLF+ T D   LLYPNP S    E HL+ F FLG LL KA++EG L+D+PF+  
Sbjct: 57  LFNPSYGLFRYTPDDSGLLYPNPSSFA-DEDHLKLFRFLGRLLGKALYEGRLLDLPFSRA 115

Query: 735 FLSKLKQKYNYLNDLPSLDPELYRHLIFLKHYEADISELELYFVI-LNNEYGEQTEEELL 793
           F  KL  K   L DL  LDPELY+ L  L   + D  +LEL F I L++ +G     EL 
Sbjct: 116 FYKKLLGKPLSLEDLEELDPELYKSLKELLDNDGDEDDLELTFTIELDSSFGGAVTVELK 175

Query: 794 PGGKNIRVTNENVITFIHLVSNHRLNFQIRQQSSHFLRGFQQLIQKDWIDMFNEHELQLL 853
           PGG++I VTNEN   ++ L  ++RLN  I +Q   F  GF ++I ++ + +F   EL+LL
Sbjct: 176 PGGRDIPVTNENKEEYVDLYVDYRLNKGIEEQVEAFRDGFSEVIPEELLSLFTPEELELL 235

Query: 854 ISGSLDSLDFDDLRQNTNYVGGYHSEHYVIEMFWEVLKSFSLENQKKFLKFVTGCSRGPL 913
           I GS D +D +DL++NT Y GGY S+   I+ FWEVL+SF+ E +KKFL+FVTG SR P+
Sbjct: 236 ICGSED-IDLEDLKKNTEYKGGYSSDSPTIQWFWEVLESFTNEERKKFLQFVTGSSRLPV 294

Query: 914 LGFKYLEPLFCIQRAAGSASEEALDRLPTSATCMNLLKLPPYRSKEQMSTKLLYAINAEA 973
            GF  L P F I+R          DRLPT+ TC NLLKLPPY SKE +  KLLYAIN  A
Sbjct: 295 GGFADLNPKFTIRRV-----GSPDDRLPTAHTCFNLLKLPPYSSKEILREKLLYAINEGA 349

Query: 974 GFD 976
           GF 
Sbjct: 350 GFG 352

It binds specific ubiquitin-conjugating enzymes (E2), accepts ubiquitin from E2, transfers ubiquitin to substrate lysine side chains, and transfers additional ubiquitin molecules to the end of growing ubiquitin chains. Length = 352
>gnl|CDD|214523 smart00119, HECTc, Domain Homologous to E6-AP Carboxyl Terminus with Back     alignment and domain information
>gnl|CDD|227354 COG5021, HUL4, Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|216035 pfam00632, HECT, HECT-domain (ubiquitin-transferase) Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 978
KOG44271096 consensus E3 ubiquitin protein ligase [Posttransla 100.0
KOG09421001 consensus E3 ubiquitin protein ligase [Posttransla 100.0
KOG0941850 consensus E3 ubiquitin protein ligase [Posttransla 100.0
COG5021872 HUL4 Ubiquitin-protein ligase [Posttranslational m 100.0
cd00078352 HECTc HECT domain; C-terminal catalytic domain of 100.0
smart00119336 HECTc Domain Homologous to E6-AP Carboxyl Terminus 100.0
KOG0939720 consensus E3 ubiquitin-protein ligase/Putative ups 100.0
KOG0170621 consensus E3 ubiquitin protein ligase [Posttransla 100.0
PF00632317 HECT: HECT-domain (ubiquitin-transferase); InterPr 100.0
KOG0940358 consensus Ubiquitin protein ligase RSP5/NEDD4 [Pos 100.0
KOG09433015 consensus Predicted ubiquitin-protein ligase/hyper 100.0
>KOG4427 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information 
Probab=100.00  E-value=2.3e-173  Score=1460.64  Aligned_cols=920  Identities=31%  Similarity=0.510  Sum_probs=810.5

Q ss_pred             CCcccchhHHHHHHHHHHHHHHHHhhhccccc----cccccCchhHHHhHHhheeccCCcchHHHHHHHHHHHHHhhhcc
Q 002025            3 PSRYRGKKAMEIEHSKVREQFFATYGRHIQNV----NRQCFGPQSAFFRQLFFFFNARNVSDISVLVETCRLMKHFVQES   78 (978)
Q Consensus         3 ~~~~r~~~~~~~~~~~ir~~f~~~~~~~~~~~----~~~~~~p~~~~~r~~lf~f~~~~~~d~~rl~~~cr~l~~~~~~~   78 (978)
                      |...||+-.++.+|.+|+++||.+|..+...-    +| ...|-..++|.++++++... .|.+||+++||+|+.+|+++
T Consensus        37 q~~lrsyl~Rkk~~~~I~~e~d~~f~~d~~d~~~~~er-v~~~~l~var~ll~q~r~ie-~~~e~~~~iCr~il~smds~  114 (1096)
T KOG4427|consen   37 QRVLRSYLVRKKAQIEIQEEFDNLFSCDSVDLTKVLER-VARPFLPVARSLLVQHRKIE-AREERLEQICRKILLSMDSE  114 (1096)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchHHHHHH-HhhhHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHhhcCC
Confidence            44579999999999999999999999988541    22 23345569999999999772 33999999999999999999


Q ss_pred             CCeeEEEEeeecccchhhh-HHHHHHHHHHHHHHHHhhchhhhhhccCCCCCCCCChhHHHHHHhhhccCCCcc------
Q 002025           79 GDVVGLFAGIDYSSKRALV-DFRVKKFAFACIQAVHQNRKELKDQLFVTPEESNTPPTLLLEAVVFLIDSRLPW------  151 (978)
Q Consensus        79 ~~~~~~~~~~~~~~~~~l~-~~~iK~l~~~C~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~w------  151 (978)
                      +|.+.+|++++++||..+. +.|||.+++.|++.|.+++||...      |  ++..++|||+||+|||||+ |      
T Consensus       115 n~~~~sfvsl~l~ke~sk~w~~qik~ils~c~~lL~eln~Er~a------d--~~~~alll~~livfTdpks-Wkilrn~  185 (1096)
T KOG4427|consen  115 NDQKYSFVSLALGKEDSKTWICQIKRILSLCSFLLTELNPERIA------D--SIVNALLLHILIVFTDPKS-WKILRNE  185 (1096)
T ss_pred             CCcceeeeeehhcccchHHHHHHHHHHHHHHHHHHHhcCHHHHH------H--HHHHHHHHHeeeEEeCCcc-eeehhcc
Confidence            9999999999999999999 999999999999999999999999      7  7788999999999999999 9      


Q ss_pred             ------------hhHHHHHHHhhhHHHHHHHHHHhcCCccccccccCCccchhhhhhhhccccCCCCcccccCCCCc---
Q 002025          152 ------------TCKVVSYLLERNVFTLLRELIVTGKESMEIHSSYGRISSLERVLTLIIPHIGQKPCICPNIDPRW---  216 (978)
Q Consensus       152 ------------~~~i~~~l~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~---  216 (978)
                                  |+|||||+.|.|||+.||..|.+|+.+.++|  + ++.++.|.+++         |+||+++|+|   
T Consensus       186 n~e~lqtamn~ic~~i~gh~~q~~~Ys~mr~~l~~~t~~~~~~--l-~~~Tl~a~~sl---------~~rpvk~~nfsd~  253 (1096)
T KOG4427|consen  186 NFEDLQTAMNIICQNIMGHLCQHGFYSAMRRYLKRGTKRTDPR--L-VITTLAATFSL---------RLRPVKQPNFSDN  253 (1096)
T ss_pred             chhhhHHHHHHHHHHHHhhhcccchHHHHHHHHHHhccCCCcc--e-eeeehhhhhhh---------ccccccCCchHHH
Confidence                        9999999999999999999999999999995  6 79999999999         9999999999   


Q ss_pred             ---hhhHhhhhhhHH-Hhhc---hhHHHHHhhCCchhhHHHHHhhhhccccccCCccccccccch--hhhhHHHHHHhhh
Q 002025          217 ---SFFSQILTIPFL-WHLF---PYIKEVFATGRTSQHYIHQMALCVQNHANVLPHEVSMELPGY--ACLLGNILETAGV  287 (978)
Q Consensus       217 ---~f~~~ilsiP~l-~~~~---~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~--~clL~N~~~~~~~  287 (978)
                         -|.++|||||+| .|+.   |-+.+.+.+++|++|.++.     +.+-++. ++++...+|.  +|+|||||++|++
T Consensus       254 l~~~fv~~IltvPaLv~hL~~~~~q~le~~ss~~l~~K~l~~-----l~d~~~~-ee~~tsme~~~~l~llgNiv~la~i  327 (1096)
T KOG4427|consen  254 LVEEFVSLILTVPALVCHLPSALPQALEHLSSLMLLDKILNI-----LRDMENS-EEQSTSMEGPSVLWLLGNIVHLATI  327 (1096)
T ss_pred             HHHHHHHHHhchhHHHHhcchhhHHHHHHHHHHHHHHHHHHH-----HHhhHhH-HHhhcCCcccHhHHHHhhhheeeec
Confidence               899999999999 9997   7799999999999999999     8888888 8887766655  9999999999954


Q ss_pred             hccCCCchhhhh-hhHHHHHHHHHhhCCCcccc---CCC--------CCCCCCCccCCCCCccccchhHHHHHHHHhhhh
Q 002025          288 ALSQPDCSFEMG-VDLAAITTFLLKALPPIKSS---RES--------SMVSDDDMTAGDEVMEPVINRDLEKQITSAIDS  355 (978)
Q Consensus       288 ~~~~~~~~~~~~-~~~~~v~t~lL~~l~~~~~~---~~~--------~~~~~~~~~~~~~~~~~~~~~~l~~Ql~~~~~~  355 (978)
                         .+...+++. -.|....++-|.+|-.++++   +.+        .-.+..-+.+.++.|     +.+++|+..+|++
T Consensus       328 ---s~~~~e~~~~~~f~~~~~~sl~~~~e~tv~~~tk~~l~~wH~vlg~~s~~~ek~~n~~i-----~~v~~q~~mlw~~  399 (1096)
T KOG4427|consen  328 ---SETDLEDELESNFYVLYTHSLVTLAENTVSQVTKVGLTDWHPVLGWTSNETEKGNNVKI-----SLVEKQLPMLWQW  399 (1096)
T ss_pred             ---CcccccccccccchhhhHHHHHHHHHHHhhcccccceeeeehhhccccCCCCCccchhH-----HHHHHHHHHHhhh
Confidence               444444544 44888888888888888776   222        112222236666666     6899999999999


Q ss_pred             HHHHHHHHHH----------------------------hhhccccCC-----C-----------CCCCCCchHHHHHHHH
Q 002025          356 RFLLQLTNVL----------------------------FSGFHLLRG-----P-----------HDEGPGDKEVAAVGAA  391 (978)
Q Consensus       356 ~~~~~l~~~l----------------------------f~~~~~~~~-----~-----------~~~g~~~~~~~~v~~v  391 (978)
                      |++|.++..+                            ++++++.++     .           ++.-.++++|..|+.+
T Consensus       400 ~likll~~dile~~~las~~~~~~sk~s~~~~l~Is~l~sr~lrk~~~~~~~l~~v~ss~~~~~~~k~~s~~~v~lv~~i  479 (1096)
T KOG4427|consen  400 RLIKLLFGDILEIRVLASKDASTSSKKSPETLLDISRLLSRALRKSCVMGPVLGPVPSSNMLSFCPKWNSSAEVLLVENI  479 (1096)
T ss_pred             hHHHHHhhhHHHhhhhccccccccCCCCCcchhHHHHHHHHHHHHhcccCCccCCCccchhhhccccccCcccceehhhh
Confidence            9999888733                            333222100     0           2222578999999999


Q ss_pred             HHHHHHhhccchh--HHHHHHhhhhhhhHHHHHHHHHhhccccccC--CC----------CC---CCCC---CCCCcchh
Q 002025          392 CAFLHVAFNTLPL--ECIMTVLAYRTELVQLLWHYMKRCHEIRKWP--FL----------PY---LSGD---APGWLLPL  451 (978)
Q Consensus       392 C~~~~~~l~tl~~--~~iL~~Laf~~~Ll~~LW~~I~~~~~~~~l~--sL----------~~---ls~d---~~~lllpL  451 (978)
                      |..|+++++|+.+  ..+++|++|.+++++++|.+|+..+++.+-.  |-          +.   +.++   +.....+|
T Consensus       480 C~~y~aslnTl~~mr~~iltgl~~~dnll~~lW~~i~e~G~~~G~~~gs~~~~~~~k~~~ev~~~l~s~~~~sk~~tamL  559 (1096)
T KOG4427|consen  480 CTAYDASLNTLWQMRLPILTGLCYLDNLLVNLWVNILELGPSPGPQPGSGQVNESTKDVLEVETLLGSPTGISKPVTAML  559 (1096)
T ss_pred             hhHHHhhhhhHHHhhhHHhhcchhhhhhHHHHHHHHHHhCCCCCCCCCccccchhHHHHHhHHHHhCCCCCCCchHHHHH
Confidence            9999999999987  4899999999999999999999999887722  11          11   1111   12356788


Q ss_pred             hhhhhhHhHHhhhccchhhhccCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccCCCCCCCCCCchHHHhhhhh
Q 002025          452 AVFCPVYKHMLTIVDNEEFYEQEKPLSLKDIRHLIVILREALWHLLWLNPTSHPNVGKSVSSPPPANKMLPAEAIQHRVS  531 (978)
Q Consensus       452 ~lfc~l~s~~L~ildDeEf~~~~~p~~l~el~~l~~~Lk~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  531 (978)
                      .|||++|.|.++|+||+|||+.|.||+++++.+++.+||.++|++||.+....+             +     ....-++
T Consensus       560 ~LFcdc~ahlitILDd~e~yekq~pF~lee~~~i~s~lN~~vyk~i~~g~v~ea-------------k-----~~t~~lF  621 (1096)
T KOG4427|consen  560 MLFCDCYAHLITILDDIEFYEKQVPFKLEELVRIASFLNTFVYKGIWDGTVPEA-------------K-----QLTTGLF  621 (1096)
T ss_pred             HHHHHHHHHHHHHhhHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHcccchhh-------------h-----hHHHHHH
Confidence            999999999999999999999999999999999999999999999997533211             1     1112278


Q ss_pred             HHHHHHHHHHhhhhccCcCCCCCCccccccc-hhhhhhhhccccchhhhhhcCCcccchhhHHHHHHHHHHHHHHhcCC-
Q 002025          532 TVASEVLSQLQDWNNRREFVPPSDFHADGVN-DFFISQATIDGTRANEILKQAPFLVPFTSRAKIFQSQLASVRQRHGS-  609 (978)
Q Consensus       532 ~~~~~lL~~L~~~n~r~~f~p~~~f~~~~~~-~~~~~~~~~~~~~~~~il~~~Pfl~pf~~Rv~if~~~l~~~r~~~~~-  609 (978)
                      .+++++|..||+|||||+|+|+++|+++++. ..+....+....++..++..+|+++|+++||.+||.++.+++...+. 
T Consensus       622 ~S~h~~l~vLYeRDcRr~Fta~d~WL~pevkPs~f~~e~ek~~~~a~lll~~mpHviP~edRv~lFR~fVqkdKa~~~lv  701 (1096)
T KOG4427|consen  622 DSAHRLLHVLYERDCRRPFTASDHWLIPEVKPSAFAAELEKVLPTADLLLTKMPHVIPHEDRVLLFREFVQKDKASRGLV  701 (1096)
T ss_pred             HHHHHHHHHHHHhccCCCCCcchhhcCCCCChhHHHHHHHhhcccceeEeccCCcccChHHHHHHHHHHHhhhHHhhccc
Confidence            8999999999999999999999999998774 34544444555667788999999999999999999999888865432 


Q ss_pred             ---CCCcce-eeEEEeCCchHHHHHHHHhcCCccccCccEEEEEEeccCcccccccCCCchHHHHHHHHHHhhcccCCCc
Q 002025          610 ---HGVFTR-SRFRIRRDHILEDAYSQMSTMSEEDLRGAIRVTFVNELGVEEAGIDGGGIFKDFMENITRAAFDVQYGLF  685 (978)
Q Consensus       610 ---~~~~~r-~~i~VrR~~ileDa~~~L~~~~~~~lk~~L~V~F~~E~G~~E~GiD~GGv~REFf~~l~~e~fdp~~gLF  685 (978)
                         .....+ ..|+|||++|+||+|+||++.+...+|+.++|+|+||+|++|||||.|||+|||++++.|.+|||+++||
T Consensus       702 ~ts~a~p~~~t~IvvrR~rivEDGf~qL~~l~~~alKs~IrVkFVNeqGl~EAGiDqdGvfKEFLeeiiKkvFdp~lnLF  781 (1096)
T KOG4427|consen  702 ETSDASPARSTEIVVRRGRIVEDGFQQLNSLGSPALKSVIRVKFVNEQGLDEAGIDQDGVFKEFLEEIIKKVFDPELNLF  781 (1096)
T ss_pred             ccccCCccceeEEEEEcccchhhHHHHHHhccchhhhceEEEEEecccCCcccccCccchHHHHHHHHHHHHhccccccc
Confidence               112223 5899999999999999999999889999999999999999999999999999999999999999999999


Q ss_pred             eecC-CCceecCCCCCCchhhHHHHHHHHHHHHHHHHHcCCcccccCcHHHHHhhhccCC--CCCCCCCCCHHHHHHHHH
Q 002025          686 KETS-DHLLYPNPGSGMIHEQHLQFFHFLGILLAKAMFEGILVDIPFATFFLSKLKQKYN--YLNDLPSLDPELYRHLIF  762 (978)
Q Consensus       686 ~~t~-~~~lypnp~s~~~~~~~l~~f~flG~llGkAL~~g~~ldl~fa~~f~k~Llg~~~--tl~DL~~lDp~l~~sL~~  762 (978)
                      ..|+ |+.+||+|.|+ .+++|+++|+|+||++|||+|+|+++|+||+++|+.+|+|...  .+|+|.++|||+||||.+
T Consensus       782 stTs~d~~LyPSPts~-~~en~lqlfeFvGrmlGKAvYEGIvvDv~fa~vflsqlLG~~~~s~~DELs~LDpElYrnLtf  860 (1096)
T KOG4427|consen  782 STTSTDRRLYPSPTSY-HHENHLQLFEFVGRMLGKAVYEGIVVDVPFASVFLSQLLGRHSLSFIDELSSLDPELYRNLTF  860 (1096)
T ss_pred             ccCCCCceecCCchhh-hhhchhHHHHHHHHHHHHHHhcceEEecccHHHHHHHHhcccchhhhhhccccCHHHHhhhhH
Confidence            9988 99999999997 7899999999999999999999999999999999999999876  799999999999999999


Q ss_pred             HhhccCccccceeeEEEEeccCCcceeeeccCCCcccccChhhHHHHHHHHHHHHHhhhHHHHHHHHHhhcccccchhHH
Q 002025          763 LKHYEADISELELYFVILNNEYGEQTEEELLPGGKNIRVTNENVITFIHLVSNHRLNFQIRQQSSHFLRGFQQLIQKDWI  842 (978)
Q Consensus       763 Lk~~~~dvedL~L~Ftv~~~~~g~~~~veLip~G~~i~VT~eNk~eYI~l~~~~~l~~~i~~q~~aF~~Gf~~Vip~~~L  842 (978)
                      +|+|+||+.||+|||+++++..|+..++||+|||+.|+||+|||.+|||.||+|++|+|+++|..||.+||+++|.++|+
T Consensus       861 vKhYdgd~~dL~LtfSvdedfmGkis~~eL~PgGkt~sVtneNKi~YIH~MA~~rmnrqi~eqt~Af~rG~rsii~P~Wl  940 (1096)
T KOG4427|consen  861 VKHYDGDLKDLCLTFSVDEDFMGKISTIELKPGGKTISVTNENKIQYIHAMAHFRMNRQIVEQTNAFYRGFRSIISPEWL  940 (1096)
T ss_pred             HHhhcccHhhheeeeEechhhccceeEEEeccCCcceeccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhcCHHHHHHhHcCCCCCCCHHHHhhcccccCCcCCCcHHHHHHHHHHhc-CCHHHHhhcceeecCcCCCCCCCcccCCC
Q 002025          843 DMFNEHELQLLISGSLDSLDFDDLRQNTNYVGGYHSEHYVIEMFWEVLKS-FSLENQKKFLKFVTGCSRGPLLGFKYLEP  921 (978)
Q Consensus       843 ~~F~p~EL~~Li~G~~~~iD~~dL~~~t~y~ggy~~~~~~I~~FWevl~~-fs~eer~kfL~FvTGssRlP~~Gf~~L~p  921 (978)
                      ++|+|.|||.||+|...+||++||++||+|.|||+.+|++|+|||+++.. |++|||+.||||||+|||+|+.||++|+|
T Consensus       941 slFs~~elq~LiSG~nsdiDl~DLkrnt~Y~GGfh~shrvIkwlWdIl~~dFt~eERklfLKFVTSCSrpPlLGFayLeP 1020 (1096)
T KOG4427|consen  941 SLFSPPELQRLISGDNSDIDLDDLKRNTKYYGGFHDSHRVIKWLWDILAGDFTPEERKLFLKFVTSCSRPPLLGFAYLEP 1020 (1096)
T ss_pred             HccCcHHHHHHhcCCCCCCCHHHHHhcCEeecccCCcchhHHHHHHHHhccCChHHHHHHHHHHhhcCCCccccccccCC
Confidence            99999999999999988999999999999999999999999999999965 99999999999999999999999999999


Q ss_pred             ceeEeecCCCCC-------------------CcCCCCCceeccccCeeecCCCCCHHHHHHHHHHHHHcCCCccCC
Q 002025          922 LFCIQRAAGSAS-------------------EEALDRLPTSATCMNLLKLPPYRSKEQMSTKLLYAINAEAGFDLS  978 (978)
Q Consensus       922 ~f~I~~~~~~~~-------------------~~~~~rLPtA~TCfN~L~LP~Yss~e~LreKL~~AI~~~~GF~LS  978 (978)
                      +|.|+++..+++                   .++.+|||||+||||+||||+|+.+.+|||||+|||.+++|||||
T Consensus      1021 pFsIrCVeVSdDqd~gdtiGSVvRGFfaiRKg~~~~RLPTaSTCfNlLKLPnY~kkStlreKLrYAIssntGFELS 1096 (1096)
T KOG4427|consen 1021 PFSIRCVEVSDDQDTGDTIGSVVRGFFAIRKGQPVERLPTASTCFNLLKLPNYKKKSTLREKLRYAISSNTGFELS 1096 (1096)
T ss_pred             CceEEEEEecCcccchhhHhHHHHhhhhhhcCCccccCCchhhHHHhhhCCCcchhHHHHHHHHHHhhcCCCcccC
Confidence            999997653322                   367889999999999999999999999999999999999999998

>KOG0942 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0941 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG5021 HUL4 Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd00078 HECTc HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3) Back     alignment and domain information
>smart00119 HECTc Domain Homologous to E6-AP Carboxyl Terminus with Back     alignment and domain information
>KOG0939 consensus E3 ubiquitin-protein ligase/Putative upstream regulatory element binding protein [Posttranslational modification, protein turnover, chaperones; Transcription] Back     alignment and domain information
>KOG0170 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF00632 HECT: HECT-domain (ubiquitin-transferase); InterPro: IPR000569 The name HECT comes from 'Homologous to the E6-AP Carboxyl Terminus' [] Back     alignment and domain information
>KOG0940 consensus Ubiquitin protein ligase RSP5/NEDD4 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query978
3h1d_A405 Structure Of The Huwe1 Hect Domain Length = 405 3e-48
3g1n_A388 Catalytic Domain Of The Human E3 Ubiquitin-Protein 3e-47
2xbb_A386 Nedd4 Hect:ub Complex Length = 386 9e-45
3jvz_C385 E2~ubiquitin-Hect Length = 385 8e-44
3jw0_C385 E2~ubiquitin-Hect Length = 385 1e-43
2oni_A392 Catalytic Domain Of The Human Nedd4-Like E3 Ligase 1e-42
3tug_A398 Crystal Structure Of The Hect Domain Of Itch E3 Ubi 2e-42
1nd7_A374 Conformational Flexibility Underlies Ubiquitin Liga 1e-41
1c4z_A358 Structure Of E6ap: Insights Into Ubiquitination Pat 5e-40
1zvd_A380 Regulation Of Smurf2 Ubiquitin Ligase Activity By A 2e-38
3olm_A429 Structure And Function Of A Ubiquitin Binding Site 6e-38
>pdb|3H1D|A Chain A, Structure Of The Huwe1 Hect Domain Length = 405 Back     alignment and structure 
Iteration: 1

 Score =  190 bits (483), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 134/407 (32%), Positives = 203/407 (49%), Gaps = 22/407 (5%)
Query: 578 EILKQAPFLVPFTSRAKIFQSQLASVRQ--RHGSHGVFTRSRFRIRRDHILEDAYSQMST 635
           E+L Q P +  F  + K F+ +L  + +  R     V       +RRDH+ ED+Y ++  
Sbjct: 15  EVLFQGPHM-DFDVKRKYFRQELERLDEGLRKEDMAV------HVRRDHVFEDSYRELHR 67
Query: 636 MSEEDLRGAIRVTFVNELGVEEAGIDGGGIFKDFMENITRAAFDVQYGLFKET-SDHLLY 694
            S E+++  + + F  E      G D GG+ +++   I+R  F+  Y LF+ +  D + Y
Sbjct: 68  KSPEEMKNRLYIVFEGE-----EGQDAGGLLREWYMIISREMFNPMYALFRTSPGDRVTY 122
Query: 695 PNPGSGMIHEQHLQFFHFLGILLAKAMFEGILVDIPFATFFLSKLKQKYNYLNDLPSLDP 754
               S   +  HL +F F+G ++AKA+++  L++  F   F   +  K     D+ S D 
Sbjct: 123 TINPSSHANPNHLSYFKFVGRIVAKAVYDNRLLECYFTRSFYKHILGKSVRYTDMESEDY 182
Query: 755 ELYRHLIFLKHYEADISEL--ELYFVILNNEYGEQTEEELLPGGKNIRVTNENVITFIHL 812
             Y+ L++L   E D+S L  +L F     E+G     +L P G NI VT EN   ++HL
Sbjct: 183 HFYQGLVYL--LENDVSTLGYDLTFSTEVQEFGVAEVRDLKPNGANILVTEENKKEYVHL 240
Query: 813 VSNHRLNFQIRQQSSHFLRGFQQLIQKDWIDMFNEHEXXXXXXXXXXXXXXXXXRQNTNY 872
           V   R+   IR+Q + FL GF ++I K  I +F E E                 + NT Y
Sbjct: 241 VCQMRMTGAIRKQLAAFLEGFYEIIPKRLISIFTEQE-LELLISGLPTIDIDDLKSNTEY 299
Query: 873 VGGYHSEHYVIEMFWEVLKSFSLENQKKFLKFVTGCSRGPLLGFKYLEPLFCIQRAAGSA 932
              Y S    I+ FW  L+SF   ++ KFL+FVTG S+ PL GF  LE +  IQ+     
Sbjct: 300 -HKYQSNSIQIQWFWRALRSFDQADRAKFLQFVTGTSKVPLQGFAALEGMNGIQKFQIHR 358
Query: 933 SEEALDRLPTSATCMNLLKLPPYRSKEQMSTKLLYAIN-AEAGFDLS 978
            + + DRLP++ TC N L LP Y S E++   LL AI  A  GF L+
Sbjct: 359 DDRSTDRLPSAHTCFNQLDLPAYESFEKLRHMLLLAIQEASEGFGLA 405
>pdb|3G1N|A Chain A, Catalytic Domain Of The Human E3 Ubiquitin-Protein Ligase Huwe1 Length = 388 Back     alignment and structure
>pdb|2XBB|A Chain A, Nedd4 Hect:ub Complex Length = 386 Back     alignment and structure
>pdb|3JVZ|C Chain C, E2~ubiquitin-Hect Length = 385 Back     alignment and structure
>pdb|3JW0|C Chain C, E2~ubiquitin-Hect Length = 385 Back     alignment and structure
>pdb|2ONI|A Chain A, Catalytic Domain Of The Human Nedd4-Like E3 Ligase Length = 392 Back     alignment and structure
>pdb|3TUG|A Chain A, Crystal Structure Of The Hect Domain Of Itch E3 Ubiquitin Ligase Length = 398 Back     alignment and structure
>pdb|1ND7|A Chain A, Conformational Flexibility Underlies Ubiquitin Ligation Mediated By The Wwp1 Hect Domain E3 Ligase Length = 374 Back     alignment and structure
>pdb|1C4Z|A Chain A, Structure Of E6ap: Insights Into Ubiquitination Pathway Length = 358 Back     alignment and structure
>pdb|1ZVD|A Chain A, Regulation Of Smurf2 Ubiquitin Ligase Activity By Anchoring The E2 To The Hect Domain Length = 380 Back     alignment and structure
>pdb|3OLM|A Chain A, Structure And Function Of A Ubiquitin Binding Site Within The Catalytic Domain Of A Hect Ubiquitin Ligase Length = 429 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query978
3h1d_A405 E3 ubiquitin-protein ligase HUWE1; E3ligase, HECT, 1e-171
2oni_A392 E3 ubiquitin-protein ligase NEDD4-like protein; al 1e-164
1nd7_A374 WW domain-containing protein 1; HECT, ubiquitin, l 1e-159
1zvd_A380 SMAD ubiquitination regulatory factor 2; ubiquitin 1e-157
3olm_A429 E3 ubiquitin-protein ligase RSP5; ligase; 2.50A {S 1e-157
1c4z_A358 E6AP, ubiquitin-protein ligase E3A; bilobal struct 1e-150
3pt3_A118 E3 ubiquitin-protein ligase UBR5; EDD, HHYD, mixed 8e-42
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-05
>3h1d_A E3 ubiquitin-protein ligase HUWE1; E3ligase, HECT, LOBE, alternative splicing, chromosomal rearrangement, cytoplasm, differentiation; 1.89A {Homo sapiens} PDB: 3g1n_A Length = 405 Back     alignment and structure
 Score =  503 bits (1297), Expect = e-171
 Identities = 137/404 (33%), Positives = 209/404 (51%), Gaps = 16/404 (3%)

Query: 578 EILKQAPFLVPFTSRAKIFQSQLASVRQRHGSHGVFTRSRFRIRRDHILEDAYSQMSTMS 637
           E+L Q P +  F  + K F+ +L  + +      +       +RRDH+ ED+Y ++   S
Sbjct: 15  EVLFQGPHM-DFDVKRKYFRQELERLDEGLRKEDM----AVHVRRDHVFEDSYRELHRKS 69

Query: 638 EEDLRGAIRVTFVNELGVEEAGIDGGGIFKDFMENITRAAFDVQYGLFKETSD--HLLYP 695
            E+++  + + F  E      G D GG+ +++   I+R  F+  Y LF+ +         
Sbjct: 70  PEEMKNRLYIVFEGE-----EGQDAGGLLREWYMIISREMFNPMYALFRTSPGDRVTYTI 124

Query: 696 NPGSGMIHEQHLQFFHFLGILLAKAMFEGILVDIPFATFFLSKLKQKYNYLNDLPSLDPE 755
           NP S   +  HL +F F+G ++AKA+++  L++  F   F   +  K     D+ S D  
Sbjct: 125 NPSSH-ANPNHLSYFKFVGRIVAKAVYDNRLLECYFTRSFYKHILGKSVRYTDMESEDYH 183

Query: 756 LYRHLIFLKHYEADISELELYFVILNNEYGEQTEEELLPGGKNIRVTNENVITFIHLVSN 815
            Y+ L++L   +      +L F     E+G     +L P G NI VT EN   ++HLV  
Sbjct: 184 FYQGLVYLLENDVSTLGYDLTFSTEVQEFGVAEVRDLKPNGANILVTEENKKEYVHLVCQ 243

Query: 816 HRLNFQIRQQSSHFLRGFQQLIQKDWIDMFNEHELQLLISGSLDSLDFDDLRQNTNYVGG 875
            R+   IR+Q + FL GF ++I K  I +F E EL+LLISG    +D DDL+ NT Y   
Sbjct: 244 MRMTGAIRKQLAAFLEGFYEIIPKRLISIFTEQELELLISGLPT-IDIDDLKSNTEY-HK 301

Query: 876 YHSEHYVIEMFWEVLKSFSLENQKKFLKFVTGCSRGPLLGFKYLEPLFCIQRAAGSASEE 935
           Y S    I+ FW  L+SF   ++ KFL+FVTG S+ PL GF  LE +  IQ+      + 
Sbjct: 302 YQSNSIQIQWFWRALRSFDQADRAKFLQFVTGTSKVPLQGFAALEGMNGIQKFQIHRDDR 361

Query: 936 ALDRLPTSATCMNLLKLPPYRSKEQMSTKLLYAINAEA-GFDLS 978
           + DRLP++ TC N L LP Y S E++   LL AI   + GF L+
Sbjct: 362 STDRLPSAHTCFNQLDLPAYESFEKLRHMLLLAIQEASEGFGLA 405
>2oni_A E3 ubiquitin-protein ligase NEDD4-like protein; alpha and beta protein (A + B), E3 ligase, HECT domain, UBL- conjugation pathway; HET: MSE; 2.20A {Homo sapiens} PDB: 3jvz_C 3jw0_C 2xbf_A 2xbb_A Length = 392 Back     alignment and structure
>1nd7_A WW domain-containing protein 1; HECT, ubiquitin, ligase, WWP1; 2.10A {Homo sapiens} SCOP: d.148.1.1 PDB: 3tug_A Length = 374 Back     alignment and structure
>1zvd_A SMAD ubiquitination regulatory factor 2; ubiquitin ligasecatalytic mechanism,X-RAY ligase; 2.10A {Homo sapiens} Length = 380 Back     alignment and structure
>3olm_A E3 ubiquitin-protein ligase RSP5; ligase; 2.50A {Saccharomyces cerevisiae} Length = 429 Back     alignment and structure
>1c4z_A E6AP, ubiquitin-protein ligase E3A; bilobal structure, elongated shape, E3 ubiquitin ligase, E2 ubiquitin conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.148.1.1 PDB: 1d5f_A Length = 358 Back     alignment and structure
>3pt3_A E3 ubiquitin-protein ligase UBR5; EDD, HHYD, mixed alpha-beta fold, ubiquitin ligase; 1.97A {Homo sapiens} Length = 118 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query978
3h1d_A405 E3 ubiquitin-protein ligase HUWE1; E3ligase, HECT, 100.0
1zvd_A380 SMAD ubiquitination regulatory factor 2; ubiquitin 100.0
2oni_A392 E3 ubiquitin-protein ligase NEDD4-like protein; al 100.0
1nd7_A374 WW domain-containing protein 1; HECT, ubiquitin, l 100.0
3olm_A429 E3 ubiquitin-protein ligase RSP5; ligase; 2.50A {S 100.0
1c4z_A358 E6AP, ubiquitin-protein ligase E3A; bilobal struct 100.0
3pt3_A118 E3 ubiquitin-protein ligase UBR5; EDD, HHYD, mixed 100.0
>3h1d_A E3 ubiquitin-protein ligase HUWE1; E3ligase, HECT, LOBE, alternative splicing, chromosomal rearrangement, cytoplasm, differentiation; 1.89A {Homo sapiens} PDB: 3g1n_A Back     alignment and structure
Probab=100.00  E-value=5.7e-91  Score=794.04  Aligned_cols=384  Identities=36%  Similarity=0.631  Sum_probs=341.9

Q ss_pred             hhhhhcCCcccchhhHHHHHHHHHHHHHHhcCCCCCcceeeEEEeCCchHHHHHHHHhcCCccccCccEEEEEEeccCcc
Q 002025          577 NEILKQAPFLVPFTSRAKIFQSQLASVRQRHGSHGVFTRSRFRIRRDHILEDAYSQMSTMSEEDLRGAIRVTFVNELGVE  656 (978)
Q Consensus       577 ~~il~~~Pfl~pf~~Rv~if~~~l~~~r~~~~~~~~~~r~~i~VrR~~ileDa~~~L~~~~~~~lk~~L~V~F~~E~G~~  656 (978)
                      .+.+.+-|+ ++|+.|+++|++++.+.+....    ..+.+++|||++|++||++++...++.++|++|+|+|+|     
T Consensus        14 ~~~~~~~~~-~~f~~k~~~F~~~l~~~~~~~~----~~~~~l~VrR~~i~eds~~~l~~~~~~~lk~~l~V~F~g-----   83 (405)
T 3h1d_A           14 LEVLFQGPH-MDFDVKRKYFRQELERLDEGLR----KEDMAVHVRRDHVFEDSYRELHRKSPEEMKNRLYIVFEG-----   83 (405)
T ss_dssp             CGGGGCSTT-SCHHHHHHHHHHHHHHHTTTCC----CCEEEEEECGGGHHHHHHHHHTTSCTTGGGSEEEEEETT-----
T ss_pred             hHHhhcCCC-cCHHHHHHHHHHHHHhhhcCCC----CCceEEEEeCchHHHHHHHHHHccCHHHhhcceEEEECC-----
Confidence            456777888 5999999999998876544221    245689999999999999999988889999999999998     


Q ss_pred             cccccCCCchHHHHHHHHHHhhcccCCCceecCC-C-ceecCCCCCCchhhHHHHHHHHHHHHHHHHHcCCcccccCcHH
Q 002025          657 EAGIDGGGIFKDFMENITRAAFDVQYGLFKETSD-H-LLYPNPGSGMIHEQHLQFFHFLGILLAKAMFEGILVDIPFATF  734 (978)
Q Consensus       657 E~GiD~GGv~REFf~~l~~e~fdp~~gLF~~t~~-~-~lypnp~s~~~~~~~l~~f~flG~llGkAL~~g~~ldl~fa~~  734 (978)
                      |+|+|+||++||||+++++++|||++|||..+++ + .++|||.+. ..++++++|+|+|+++|+|||+|+++|++||++
T Consensus        84 E~G~D~GG~~rEff~ll~~elf~p~~gLF~~~~~~~~~~~~np~s~-~~~~~l~~f~flGrliG~Al~~~~~ld~~F~~~  162 (405)
T 3h1d_A           84 EEGQDAGGLLREWYMIISREMFNPMYALFRTSPGDRVTYTINPSSH-ANPNHLSYFKFVGRIVAKAVYDNRLLECYFTRS  162 (405)
T ss_dssp             CCSCCCTTHHHHHHHHHHHHTTCGGGTSEEECSSCSSEEEECCC------CHHHHHHHHHHHHHHHHHHTCCCCCEECHH
T ss_pred             CCCcCCChhHHHHHHHHHHHHhCCcccceeeccCCceeEeeCCccc-cChhHHHHHHHHhHHHHHHHhCCCccCCCccHH
Confidence            7899999999999999999999999999998753 3 466999875 567899999999999999999999999999999


Q ss_pred             HHHhhhccCCCCCCCCCCCHHHHHHHHHHhhccCccccceeeEEEEeccCCcceeeeccCCCcccccChhhHHHHHHHHH
Q 002025          735 FLSKLKQKYNYLNDLPSLDPELYRHLIFLKHYEADISELELYFVILNNEYGEQTEEELLPGGKNIRVTNENVITFIHLVS  814 (978)
Q Consensus       735 f~k~Llg~~~tl~DL~~lDp~l~~sL~~Lk~~~~dvedL~L~Ftv~~~~~g~~~~veLip~G~~i~VT~eNk~eYI~l~~  814 (978)
                      |||+|+|.+++++||+++||++|++|++|++++.+-.+++++|+++.+.+|...++||+|||++|+||++||.+||++++
T Consensus       163 f~K~Llg~~~~l~DL~~~Dp~l~~sL~~ll~~~~~~l~l~ltF~~~~~~~G~~~~veL~p~G~~i~VT~~Nk~eYV~l~~  242 (405)
T 3h1d_A          163 FYKHILGKSVRYTDMESEDYHFYQGLVYLLENDVSTLGYDLTFSTEVQEFGVAEVRDLKPNGANILVTEENKKEYVHLVC  242 (405)
T ss_dssp             HHHHHHTCCCCGGGHHHHCHHHHHHHHHHHHSCGGGSSSCEEEETTTCCEEECCGGGGSSCSSEEECCTTTHHHHHHHHH
T ss_pred             HHHHhcCCCCCHHHHHHhhHHHHHHHhhhhcCChhhhcceeEEEEEeecCCceeeEeecCCCCCCccchHhHHHHHHHHH
Confidence            99999999999999999999999999999986432223578898877788888899999999999999999999999999


Q ss_pred             HHHHhhhHHHHHHHHHhhcccccchhHHhhcCHHHHHHhHcCCCCCCCHHHHhhcccccCCcCCCcHHHHHHHHHHhcCC
Q 002025          815 NHRLNFQIRQQSSHFLRGFQQLIQKDWIDMFNEHELQLLISGSLDSLDFDDLRQNTNYVGGYHSEHYVIEMFWEVLKSFS  894 (978)
Q Consensus       815 ~~~l~~~i~~q~~aF~~Gf~~Vip~~~L~~F~p~EL~~Li~G~~~~iD~~dL~~~t~y~ggy~~~~~~I~~FWevl~~fs  894 (978)
                      +|+++++|++|++||++||++|||.+++++|+|+||+.+|||.+ +||+++|++||.|. ||+++|++|+|||+++++||
T Consensus       243 ~~~l~~~v~~q~~aF~~Gf~~Vip~~~L~lF~~~ELe~Li~G~~-~id~~dl~~~t~y~-gy~~~~~~i~~FW~v~~~~s  320 (405)
T 3h1d_A          243 QMRMTGAIRKQLAAFLEGFYEIIPKRLISIFTEQELELLISGLP-TIDIDDLKSNTEYH-KYQSNSIQIQWFWRALRSFD  320 (405)
T ss_dssp             HHHHTGGGHHHHHHHHHHHHHHSCHHHHTTSCHHHHHHHHHCCC-CCCHHHHHHTEEEE-SSCTTCHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhHHHHhCCCHHHHHHHhCCCC-CCCHHHHHhhCccc-CCCCCCchHhhHHHHHHhCC
Confidence            99999999999999999999999999999999999999999986 59999999999997 89999999999999999999


Q ss_pred             HHHHhhcceeecCcCCCCCCCcccCCC-----ceeEeecCCCCCCcCCCCCceeccccCeeecCCCCCHHHHHHHHHHHH
Q 002025          895 LENQKKFLKFVTGCSRGPLLGFKYLEP-----LFCIQRAAGSASEEALDRLPTSATCMNLLKLPPYRSKEQMSTKLLYAI  969 (978)
Q Consensus       895 ~eer~kfL~FvTGssRlP~~Gf~~L~p-----~f~I~~~~~~~~~~~~~rLPtA~TCfN~L~LP~Yss~e~LreKL~~AI  969 (978)
                      +|||++||+|||||+|+|++||+.|+|     +|+|++.+.     ++++||+||||||+|+||+|+|+|+||+||++||
T Consensus       321 ~eer~~fL~FvTGs~rlP~~Gf~~L~~~~~~~~f~i~~~~~-----~~~~LP~a~TCfn~L~LP~Yss~e~l~ekL~~AI  395 (405)
T 3h1d_A          321 QADRAKFLQFVTGTSKVPLQGFAALEGMNGIQKFQIHRDDR-----STDRLPSAHTCFNQLDLPAYESFEKLRHMLLLAI  395 (405)
T ss_dssp             HHHHHHHHHHHHSSSCCCTTCGGGCBCSSSBCCEEEEEECS-----CTTSCCEEEGGGTEEEEECCSSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCCCCCCccccccccCCCceEEEeeCCC-----CCCCCccceeccCEeECCCCCCHHHHHHHHHHHH
Confidence            999999999999999999999999974     799987653     2479999999999999999999999999999999


Q ss_pred             HcC-CCccCC
Q 002025          970 NAE-AGFDLS  978 (978)
Q Consensus       970 ~~~-~GF~LS  978 (978)
                      +++ +||||.
T Consensus       396 ~e~~~GFgla  405 (405)
T 3h1d_A          396 QEASEGFGLA  405 (405)
T ss_dssp             HC--------
T ss_pred             HhCCCCcCCC
Confidence            985 799973
>1zvd_A SMAD ubiquitination regulatory factor 2; ubiquitin ligasecatalytic mechanism,X-RAY ligase; 2.10A {Homo sapiens} Back     alignment and structure
>2oni_A E3 ubiquitin-protein ligase NEDD4-like protein; alpha and beta protein (A + B), E3 ligase, HECT domain, UBL- conjugation pathway; HET: MSE; 2.20A {Homo sapiens} PDB: 3jvz_C 3jw0_C 2xbf_A 2xbb_A Back     alignment and structure
>1nd7_A WW domain-containing protein 1; HECT, ubiquitin, ligase, WWP1; 2.10A {Homo sapiens} SCOP: d.148.1.1 PDB: 3tug_A Back     alignment and structure
>3olm_A E3 ubiquitin-protein ligase RSP5; ligase; 2.50A {Saccharomyces cerevisiae} Back     alignment and structure
>1c4z_A E6AP, ubiquitin-protein ligase E3A; bilobal structure, elongated shape, E3 ubiquitin ligase, E2 ubiquitin conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.148.1.1 PDB: 1d5f_A Back     alignment and structure
>3pt3_A E3 ubiquitin-protein ligase UBR5; EDD, HHYD, mixed alpha-beta fold, ubiquitin ligase; 1.97A {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 978
d1nd7a_374 d.148.1.1 (A:) WW domain-containing protein 1, WWP 1e-101
d1c4za_350 d.148.1.1 (A:) Ubiquitin-protein ligase E3a (E6ap) 2e-94
>d1nd7a_ d.148.1.1 (A:) WW domain-containing protein 1, WWP1 {Human (Homo sapiens) [TaxId: 9606]} Length = 374 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Hect, E3 ligase catalytic domain
superfamily: Hect, E3 ligase catalytic domain
family: Hect, E3 ligase catalytic domain
domain: WW domain-containing protein 1, WWP1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  320 bits (820), Expect = e-101
 Identities = 121/382 (31%), Positives = 196/382 (51%), Gaps = 21/382 (5%)

Query: 596 FQSQLASVRQRHGSHGVFTRSRFRIRRDHILEDAYSQMSTMSEEDLRGAIRVTFVNELGV 655
           F+ +LA  R    S+ + +  +  + R  + ED++ Q+  +   DLR  + V F  E   
Sbjct: 4   FRWKLAHFRYLCQSNALPSHVKINVSRQTLFEDSFQQIMALKPYDLRRRLYVIFRGE--- 60

Query: 656 EEAGIDGGGIFKDFMENITRAAFDVQYGLFKET--SDHLLYPNPGSGMIHEQHLQFFHFL 713
              G+D GG+ +++   ++    +  Y LF+    +++ L  NP S  I+  HL +F F+
Sbjct: 61  --EGLDYGGLAREWFFLLSHEVLNPMYCLFEYAGKNNYCLQINPAS-TINPDHLSYFCFI 117

Query: 714 GILLAKAMFEGILVDIPFATFFLSKLKQKYNYLNDLPSLDPELYRHLIFLKHYEADISEL 773
           G  +A A+F G  +D  F+  F  ++  K   + DL S+D E Y  LI+++    +   L
Sbjct: 118 GRFIAMALFHGKFIDTGFSLPFYKRMLSKKLTIKDLESIDTEFYNSLIWIRDNNIEECGL 177

Query: 774 ELYFVILNNEYGEQTEEELLPGGKNIRVTNENVITFIHLVSNHRLNFQIRQQSSHFLRGF 833
           E+YF +     G+ T  +L  GG NI VT EN   +I L++  R +  +++Q+  FL GF
Sbjct: 178 EMYFSVDMEILGKVTSHDLKLGGSNILVTEENKDEYIGLMTEWRFSRGVQEQTKAFLDGF 237

Query: 834 QQLIQKDWIDMFNEHELQLLISGSLDSLDFDDLRQNTNYVGGYHSEHYVIEMFWEVLKSF 893
            +++   W+  F+E EL++++ G  + +D  D ++NT Y   Y      I  FW+ +K  
Sbjct: 238 NEVVPLQWLQYFDEKELEVMLCGMQE-VDLADWQRNTVYR-HYTRNSKQIIWFWQFVKET 295

Query: 894 SLENQKKFLKFVTGCSRGPLLGFKYLEP-----LFCIQRAAGSASEEALDRLPTSATCMN 948
             E + + L+FVTG  R PL GF  L        FCI++            LP S TC N
Sbjct: 296 DNEVRMRLLQFVTGTCRLPLGGFAELMGSNGPQKFCIEKVGKD------TWLPRSHTCFN 349

Query: 949 LLKLPPYRSKEQMSTKLLYAIN 970
            L LPPY+S EQ+  KLL+AI 
Sbjct: 350 RLDLPPYKSYEQLKEKLLFAIE 371
>d1c4za_ d.148.1.1 (A:) Ubiquitin-protein ligase E3a (E6ap) {Human (Homo sapiens) [TaxId: 9606]} Length = 350 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query978
d1nd7a_374 WW domain-containing protein 1, WWP1 {Human (Homo 100.0
d1c4za_350 Ubiquitin-protein ligase E3a (E6ap) {Human (Homo s 100.0
>d1nd7a_ d.148.1.1 (A:) WW domain-containing protein 1, WWP1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Hect, E3 ligase catalytic domain
superfamily: Hect, E3 ligase catalytic domain
family: Hect, E3 ligase catalytic domain
domain: WW domain-containing protein 1, WWP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.7e-80  Score=702.75  Aligned_cols=366  Identities=33%  Similarity=0.592  Sum_probs=336.9

Q ss_pred             cchhhHHHHHHHHHHHHHHhcCCCCCcceeeEEEeCCchHHHHHHHHhcCCccccCccEEEEEEeccCcccccccCCCch
Q 002025          587 VPFTSRAKIFQSQLASVRQRHGSHGVFTRSRFRIRRDHILEDAYSQMSTMSEEDLRGAIRVTFVNELGVEEAGIDGGGIF  666 (978)
Q Consensus       587 ~pf~~Rv~if~~~l~~~r~~~~~~~~~~r~~i~VrR~~ileDa~~~L~~~~~~~lk~~L~V~F~~E~G~~E~GiD~GGv~  666 (978)
                      ++|+.|...|+......       ......+|+|||++|++||++++.+.++.+++++|+|+|+|     |+|+|+|||+
T Consensus         2 ~~~~~~~~~f~~~~~~~-------~~~~~~~i~V~R~~l~~d~~~~l~~~~~~~l~~~l~V~F~g-----E~g~D~GG~~   69 (374)
T d1nd7a_           2 MGFRWKLAHFRYLCQSN-------ALPSHVKINVSRQTLFEDSFQQIMALKPYDLRRRLYVIFRG-----EEGLDYGGLA   69 (374)
T ss_dssp             CTHHHHHHHHHHHHHHT-------CCSSEEEEEECTTTHHHHHHHHHHTSCGGGGGSEEEEEETT-----TCCCCCTHHH
T ss_pred             ccHHHHHHHHHHHHhhc-------CCCCceEEEEccccHHHHHHHHHHhcCHHHhCCCeEEEECC-----CCccCCCccH
Confidence            46889999998654331       12235689999999999999999999999999999999998     7899999999


Q ss_pred             HHHHHHHHHHhhcccCCCceecCCC--ceecCCCCCCchhhHHHHHHHHHHHHHHHHHcCCcccccCcHHHHHhhhccCC
Q 002025          667 KDFMENITRAAFDVQYGLFKETSDH--LLYPNPGSGMIHEQHLQFFHFLGILLAKAMFEGILVDIPFATFFLSKLKQKYN  744 (978)
Q Consensus       667 REFf~~l~~e~fdp~~gLF~~t~~~--~lypnp~s~~~~~~~l~~f~flG~llGkAL~~g~~ldl~fa~~f~k~Llg~~~  744 (978)
                      ||||+++++++++|++|+|..++++  .++|||.+. ..++++++|+++|+++|+||++|.+++++||++|||+|+|+++
T Consensus        70 rEff~~l~~el~~p~~~lf~~~~~~~~~~~~~p~~~-~~~~~~~~f~~lG~lig~al~~~~~~~~~f~~~f~k~Llg~~~  148 (374)
T d1nd7a_          70 REWFFLLSHEVLNPMYCLFEYAGKNNYCLQINPAST-INPDHLSYFCFIGRFIAMALFHGKFIDTGFSLPFYKRMLSKKL  148 (374)
T ss_dssp             HHHHHHHHHHHTCGGGSSEEESSSSSCCEEECGGGG-GSTTHHHHHHHHHHHHHHHHHTTCCCCCCCCHHHHHHHTTCCC
T ss_pred             HHHHHHHHHHHcCCccCCeeecCCCCcccccCCccc-cChhHHHHHHHhHHHHHHHHHcCcccCCCccHHHHHHhcCCCC
Confidence            9999999999999999999977543  577999774 4677889999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCHHHHHHHHHHhhccCccccceeeEEEEeccCCcceeeeccCCCcccccChhhHHHHHHHHHHHHHhhhHHH
Q 002025          745 YLNDLPSLDPELYRHLIFLKHYEADISELELYFVILNNEYGEQTEEELLPGGKNIRVTNENVITFIHLVSNHRLNFQIRQ  824 (978)
Q Consensus       745 tl~DL~~lDp~l~~sL~~Lk~~~~dvedL~L~Ftv~~~~~g~~~~veLip~G~~i~VT~eNk~eYI~l~~~~~l~~~i~~  824 (978)
                      +++||+++||++|++|.++++++.+..+++++|+++.+..|...++||+|||++++||.+|+.+||+++++|+++++++.
T Consensus       149 t~~DL~~iD~~~~~sl~~l~~~~~e~~~l~l~f~~~~~~~~~~~~~eL~~~G~~~~VT~~N~~~yv~~~~~~~l~~~~~~  228 (374)
T d1nd7a_         149 TIKDLESIDTEFYNSLIWIRDNNIEECGLEMYFSVDMEILGKVTSHDLKLGGSNILVTEENKDEYIGLMTEWRFSRGVQE  228 (374)
T ss_dssp             CHHHHHTTCHHHHHHHHHHHSSCSCSSCCCCBSEECCCSSTTCCCEESSTTGGGCBCCTTTHHHHHHHHHHHHHHTTTHH
T ss_pred             CHHHHHHhCHHHHHhHHHHHhccccccccceeEEEEeecCCCcceeecCCCCCcccchHHHHHHHHHHHHHHHHhccHHH
Confidence            99999999999999999999877666778999999998899999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhcccccchhHHhhcCHHHHHHhHcCCCCCCCHHHHhhcccccCCcCCCcHHHHHHHHHHhcCCHHHHhhccee
Q 002025          825 QSSHFLRGFQQLIQKDWIDMFNEHELQLLISGSLDSLDFDDLRQNTNYVGGYHSEHYVIEMFWEVLKSFSLENQKKFLKF  904 (978)
Q Consensus       825 q~~aF~~Gf~~Vip~~~L~~F~p~EL~~Li~G~~~~iD~~dL~~~t~y~ggy~~~~~~I~~FWevl~~fs~eer~kfL~F  904 (978)
                      |++||++||++|+|.+++++|+|+||+.++||.++ +|+++|+++|.|. ||+++|++|+|||+++++||+|||++||+|
T Consensus       229 ~~~afr~Gf~~vip~~~l~~f~~~eL~~licG~~~-id~~~l~~~~~y~-gy~~~s~~i~~fw~vl~~~t~ee~~~fL~F  306 (374)
T d1nd7a_         229 QTKAFLDGFNEVVPLQWLQYFDEKELEVMLCGMQE-VDLADWQRNTVYR-HYTRNSKQIIWFWQFVKETDNEVRMRLLQF  306 (374)
T ss_dssp             HHHHHHHHHHHHSCGGGGTTCCHHHHHHHHHCCCC-CCHHHHHHTEEEE-SCCTTSHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred             HHHHHHHhHHHhCCHHHHhhCCHHHHHHhhCCCCC-CCHHHHhhheeec-cCCCCCHHHHHHHHHHHhcCHHHHHHhhee
Confidence            99999999999999999999999999999999864 9999999999997 799999999999999999999999999999


Q ss_pred             ecCcCCCCCCCcccCC-----CceeEeecCCCCCCcCCCCCceeccccCeeecCCCCCHHHHHHHHHHHHHcCC
Q 002025          905 VTGCSRGPLLGFKYLE-----PLFCIQRAAGSASEEALDRLPTSATCMNLLKLPPYRSKEQMSTKLLYAINAEA  973 (978)
Q Consensus       905 vTGssRlP~~Gf~~L~-----p~f~I~~~~~~~~~~~~~rLPtA~TCfN~L~LP~Yss~e~LreKL~~AI~~~~  973 (978)
                      +|||+|+|++||+.+.     ++|+|++.+.      +++||+||||||+|+||+|+|+|+|||||++||++++
T Consensus       307 vTGs~rlP~~G~~~l~~~~~~~~~~i~~~~~------~~~LP~A~TCfn~L~LP~Yss~e~l~ekL~~AI~~~e  374 (374)
T d1nd7a_         307 VTGTCRLPLGGFAELMGSNGPQKFCIEKVGK------DTWLPRSHTCFNRLDLPPYKSYEQLKEKLLFAIEETE  374 (374)
T ss_dssp             HHSCSCCCTTCGGGCEETTEECCEEEECCSC------TTSCCEEEGGGTEEECCCCSSHHHHHHHHHHHHHSCC
T ss_pred             ecCCCCCCCcchhhhcccCCCCceeeccCCC------CCCCCchhhhhcEeeCCCCCCHHHHHHHHHHHHHhcC
Confidence            9999999999999985     3577775542      3699999999999999999999999999999999975
>d1c4za_ d.148.1.1 (A:) Ubiquitin-protein ligase E3a (E6ap) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure