Citrus Sinensis ID: 002041

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970------
MELQNTVKEALNALYHHPDDAVRMQADRWLQDFQHTIDAWQVADNLLHDATSNLETLIFCSQTLRSKVQRDVEELPSEAVRGLQDSLNTLLKKFHKGPPKVRTQISIAVAALAVHISAEDWGGGGIVNWLRDEMNSHPEFVPGFLELLTVLPEEVFNYKIAARPERRRQFEKELTSQMEVALSTLTACLHINELKEQVLEAFASWLRLKHRIPGSVLASHPLVLTALSSLHSEILSEASVNVISELIHYSAAGSSGGATVNMPLIQVIVPQIMSLKAHLTDSSKDEEDVKAIARLFADMGDSYVELIATGSDESMLIVHALLEVASHPEYDIASMTFNFWHSLQVILTKRDSYISFGNEASAEAERSRRLQVFRSAYESLVSLVSFRVQYPQDYQDLSLEDLKEFKHTRYDLACCSSSTLTESVMLIAVADVLIDAASVLGGDATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVVEAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSEDTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRACKYAVRTSKRFMGITIGAILEEIQGLYQQHQQPCFLYLSSEVIKIFGSDPSCASYLHNLIEALFKRTTCLLTSIEEFTSRPDVADDCFLLASRCIRYCPQLFIPSSVFPSLVDCSMIGITVQHREASNSILTFLSDIFDLAKSCKGEEFLSVRDSVIIPRGASITRILIASLTGALPSSRLETVTYALLALTRAYGVRSLEWAKESVSLIPLTALAEVERSRFLQALSEAASGVDVNAAMAPVEELSDVCRRNRTVQEIVQGALKPLELNRVPVL
cccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHccccccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHccccccHHHHHHHHHcccHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHccccccHHccHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcHHHHHHHHHccccHHHccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHcHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcHHHHHHHHHccccccccccccc
ccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcHHHccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHcccHHHHHHHHHHHHHccHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHccccHHHHcccHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHcHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHccHcHccHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccHHHHHHHHcccccccEEEcc
MELQNTVKEALNAlyhhpddavRMQADRWLQDFQHTIDAWQVADNLLHDATSNLETLIFCSQTLRSKVQRDVEELPSEAVRGLQDSLNTLLKkfhkgppkvrTQISIAVAALAVHIsaedwggggivNWLRdemnshpefvpGFLELLTVLPEEVFNYKIAARPERRRQFEKELTSQMEVALSTLTACLHINELKEQVLEAFASWLRLkhripgsvlashPLVLTALSSLHSEILSEASVNVISELIHYsaagssggatvnmpLIQVIVPQIMSLkahltdsskdEEDVKAIARLFADMGDSYVELIATGSDESMLIVHALLevashpeydiasmTFNFWHSLQVILTKRDSYISFGNEASAEAERSRRLQVFRSAYESLVSLVSFRvqypqdyqdlsLEDLKEfkhtrydlaccssstlTESVMLIAVADVLIDAASVLGGDATLKILYIKFVEGVaccgnkhnewrpaEAALFCIRAISTYVSVVEAEVMPQVMAllpklpqqpqlLQTVCLTIGAYSkwfdaassdpSILASVLSILTSGMSTSEDTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTavngegslkvsaeDSLHLVEALSMVITELPQVDAKKALEMlclpvvtplqeiinqgpeilqkkhprdltvhIDRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRACKYAVRTSKRFMGITIGAILEEIQGLYQQHQQPCFLYLSSEVIKifgsdpscaSYLHNLIEALFKRTTCLLTSieeftsrpdvaddCFLLASRcirycpqlfipssvfpslvdcsmigiTVQHREASNSILTFLSDIFDLaksckgeeflsvrdsviiprgaSITRILIASLTgalpssrlETVTYALLALTRAYGVRSLEWAKESVSLIPLTALAEVERSRFLQALSEAasgvdvnaamapveELSDVCRRNRTVQEIVQGAlkplelnrvpvl
MELQNTVKEALNALYHHPDDAVRMQADRWLQDFQHTIDAWQVADNLLHDATSNLETLIFCSQTLRSKVQRDVEELPSEAVRGLQDSLNTLLKKfhkgppkvRTQISIAVAALAVHISAEDWGGGGIVNWLRDEMNSHPEFVPGFLELLTVLPEEVFNYKIAARPERRRQFEKELTSQMEVALSTLTACLHINELKEQVLEAFASWLRLKHRIPGSVLASHPLVLTALSSLHSEILSEASVNVISELIHYSAAGSSGGATVNMPLIQVIVPQIMSLKAHLTDSSKDEEDVKAIARLFADMGDSYVELIATGSDESMLIVHALLEVASHPEYDIASMTFNFWHSLQVILTKRDSYISFGNEASAEAERSRRLQVFRSAYESLVSLVSFRVQYPQDYQDLSLEDLKEFKHTRYDLACCSSSTLTESVMLIAVADVLIDAASVLGGDATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVVEAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSEDTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGpeilqkkhprdLTVHIDRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRACKYAVRTSKRFMGITIGAILEEIQGLYQQHQQPCFLYLSSEVIKIFGSDPSCASYLHNLIEALFKRTTCLLTSieeftsrpdvADDCFLLASRCIRYCPQLFIPSSVFPSLVDCSMIGITVQHREASNSILTFLSDIFDLAKSCKgeeflsvrdsviiprGASITRILIASltgalpssrlETVTYALLALTRAYGVRSLEWAKESVSLIPLTALAEVERSRFLQALSEAASGVDVNAAMAPVEELSDVCRRNRTVQEIvqgalkplelnrvpvl
MELQNTVKEALNALYHHPDDAVRMQADRWLQDFQHTIDAWQVADNLLHDATSNLETLIFCSQTLRSKVQRDVEELPSEAVRGLQDSLNTLLKKFHKGPPKVRTQISIAVAALAVHISAEDWGGGGIVNWLRDEMNSHPEFVPGFLELLTVLPEEVFNYKIAARPERRRQFEKELTSQMEVALSTLTACLHINELKEQVLEAFASWLRLKHRIPGSVLASHPLVLTALSSLHSEILSEASVNVISELIHYSAAGSSGGATVNMPLIQVIVPQIMSLKAHLTDSSKDEEDVKAIARLFADMGDSYVELIATGSDESMLIVHALLEVASHPEYDIASMTFNFWHSLQVILTKRDSYISFGNEASAEAERSRRLQVFRSAYESLVSLVSFRVQYPQDYQDLSLEDLKEFKHTRYDLACCSSSTLTESVMLIAVADVLIDAASVLGGDATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVVEAEVMPQVMAllpklpqqpqllqTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSEDTaaaaalaFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRACKYAVRTSKRFMGITIGAILEEIQGLYQQHQQPCFLYLSSEVIKIFGSDPSCASYLHNLIEALFKRTTCLLTSIEEFTSRPDVADDCFLLASRCIRYCPQLFIPSSVFPSLVDCSMIGITVQHREASNSILTFLSDIFDLAKSCKGEEFLSVRDSVIIPRGASITRILIASLTGALPSSRLETVTYALLALTRAYGVRSLEWAKESVSLIPLTALAEVERSRFLQALSEAASGVDVNAAMAPVEELSDVCRRNRTVQEIVQGALKPLELNRVPVL
**********LNALYHHPDDAVRMQADRWLQDFQHTIDAWQVADNLLHDATSNLETLIFCSQTLRSK******************SLNTLLKKFHKGPPKVRTQISIAVAALAVHISAEDWGGGGIVNWLRDEMNSHPEFVPGFLELLTVLPEEVFNYKIAAR***********TSQMEVALSTLTACLHINELKEQVLEAFASWLRLKHRIPGSVLASHPLVLTALSSLHSEILSEASVNVISELIHYSAAGSSGGATVNMPLIQVIVPQIMSLKAHL*********VKAIARLFADMGDSYVELIATGSDESMLIVHALLEVASHPEYDIASMTFNFWHSLQVILTKRDSYISFGN**********RLQVFRSAYESLVSLVSFRVQYPQDYQDLSLEDLKEFKHTRYDLACCSSSTLTESVMLIAVADVLIDAASVLGGDATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVVEAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSEDTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRACKYAVRTSKRFMGITIGAILEEIQG********CFLYLSSEVIKIFGSDPSCASYLHNLIEALFKRTTCLLTSIEEFTSRPDVADDCFLLASRCIRYCPQLFIPSSVFPSLVDCSMIGITVQHREASNSILTFLSDIFDLAKSCKGEEFLSVRDSVIIPRGASITRILIASLTGALPSSRLETVTYALLALTRAYGVRSLEWAKESVSLIPLTALAEVERSRFLQALSEAASGVDVNAAMAPVEELSDVCRRNRTVQEIVQGAL***********
*ELQNTVKEALNALYHHP**AVRMQADRWLQDFQHTIDAWQVADNLLHDATSNLETLIFCSQTLRSKVQRDVEELPSEAVRGLQDSLNTLLKKFHKGPPKVRTQISIAVAALAVHISAEDWGGGGIVNWLRDEMNSHPEFVPGFLELLTVLPEEV**********RRRQFEKELTSQMEVALSTLTACLHINELKEQVLEAFASWLRLKHRIPGSVLASHPLVLTALSSLHSEILSEASVNVISELIHYSAAGSSGGATVNMPLIQVIVPQIMSLKAHLTDSSKDEEDVKAIARLFADMGDSYVELIATGSDESMLIVHALLEVASHPEYDIASMTFNFWHSLQVILTKRDSYI***********RSRRLQVFRSAYESLVSLVSFRVQYPQDYQDLSLEDLKEFKHTRYDLACCSSSTLTESVMLIAVADVLIDAASVLGGDATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVVEAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSEDTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRACKYAVRTSKRFMGITIGAILEEIQGLYQQHQQPCFLYLSSEVIKIFGSDPSCASYLHNLIEALFKRTTCLLTSIEEFTSRPDVADDCFLLASRCIRYCPQLFIPSSVFPSLVDCSMIGITVQHREASNSILTFLSDIFDLAKSCKGEEFLSVRDSVIIPRGASITRILIASLTGALPSSRLETVTYALLALTRAYGVRSLEWAKESVSLIPLTALAEVERSRFLQALSEAASGVDVNAAMAPVEELSDVCRRNRTVQEIVQGALKPLELNRVPVL
MELQNTVKEALNALYHHPDDAVRMQADRWLQDFQHTIDAWQVADNLLHDATSNLETLIFCSQTLRSKVQRDVEELPSEAVRGLQDSLNTLLKKFHKGPPKVRTQISIAVAALAVHISAEDWGGGGIVNWLRDEMNSHPEFVPGFLELLTVLPEEVFNYKIAARPERRRQFEKELTSQMEVALSTLTACLHINELKEQVLEAFASWLRLKHRIPGSVLASHPLVLTALSSLHSEILSEASVNVISELIHYSAAGSSGGATVNMPLIQVIVPQIMSLKAH********EDVKAIARLFADMGDSYVELIATGSDESMLIVHALLEVASHPEYDIASMTFNFWHSLQVILTKRDSYISFGN*********RRLQVFRSAYESLVSLVSFRVQYPQDYQDLSLEDLKEFKHTRYDLACCSSSTLTESVMLIAVADVLIDAASVLGGDATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVVEAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSEDTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRACKYAVRTSKRFMGITIGAILEEIQGLYQQHQQPCFLYLSSEVIKIFGSDPSCASYLHNLIEALFKRTTCLLTSIEEFTSRPDVADDCFLLASRCIRYCPQLFIPSSVFPSLVDCSMIGITVQHREASNSILTFLSDIFDLAKSCKGEEFLSVRDSVIIPRGASITRILIASLTGALPSSRLETVTYALLALTRAYGVRSLEWAKESVSLIPLTALAEVERSRFLQALSEAASGVDVNAAMAPVEELSDVCRRNRTVQEIVQGALKPLELNRVPVL
*ELQNTVKEALNALYHHPDDAVRMQADRWLQDFQHTIDAWQVADNLLHDATSNLETLIFCSQTLRSKVQRDVEELPSEAVRGLQDSLNTLLKKFHKGPPKVRTQISIAVAALAVHISAEDWGGGGIVNWLRDEMNSHPEFVPGFLELLTVLPEEVFNYKIAARPERRRQFEKELTSQMEVALSTLTACLHINELKEQVLEAFASWLRLKHRIPGSVLASHPLVLTALSSLHSEILSEASVNVISELIHYSAAGSSGGATVNMPLIQVIVPQIMSLKAHLTDSSKDEEDVKAIARLFADMGDSYVELIATGSDESMLIVHALLEVASHPEYDIASMTFNFWHSLQVILTKRDSYISFGNEASAEAERSRRLQVFRSAYESLVSLVSFRVQYPQDYQDLSLEDLKEFKHTRYDLACCSSSTLTESVMLIAVADVLIDAASVLGGDATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVVEAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSEDTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRACKYAVRTSKRFMGITIGAILEEIQGLYQQHQQPCFLYLSSEVIKIFGSDPSCASYLHNLIEALFKRTTCLLTSIEEFTSRPDVADDCFLLASRCIRYCPQLFIPSSVFPSLVDCSMIGITVQHREASNSILTFLSDIFDLAKSCKGEEFLSVRDSVIIPRGASITRILIASLTGALPSSRLETVTYALLALTRAYGVRSLEWAKESVSLIPLTALAEVERSRFLQALSEAASGVDVNAAMAPVEELSDVCRRNRTVQEIVQGALKPLELNRVPVL
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MELQNTVKEALNALYHHPDDAVRMQADRWLQDFQHTIDAWQVADNLLHDATSNLETLIFCSQTLRSKVQRDVEELPSEAVRGLQDSLNTLLKKFHKGPPKVRTQISIAVAALAVHISAEDWGGGGIVNWLRDEMNSHPEFVPGFLELLTVLPEEVFNYKIAARPERRRQFEKELTSQMEVALSTLTACLHINELKEQVLEAFASWLRLKHRIPGSVLASHPLVLTALSSLHSEILSEASVNVISELIHYSAAGSSGGATVNMPLIQVIVPQIMSLKAHLTDSSKDEEDVKAIARLFADMGDSYVELIATGSDESMLIVHALLEVASHPEYDIASMTFNFWHSLQVILTKRDSYISFGNEASAEAERSRRLQVFRSAYESLVSLVSFRVQYPQDYQDLSLEDLKEFKHTRYDLACCSSSTLTESVMLIAVADVLIDAASVLGGDATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVVEAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSEDTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRACKYAVRTSKRFMGITIGAILEEIQGLYQQHQQPCFLYLSSEVIKIFGSDPSCASYLHNLIEALFKRTTCLLTSIEEFTSRPDVADDCFLLASRCIRYCPQLFIPSSVFPSLVDCSMIGITVQHREASNSILTFLSDIFDLAKSCKGEEFLSVRDSVIIPRGASITRILIASLTGALPSSRLETVTYALLALTRAYGVRSLEWAKESVSLIPLTALAEVERSRFLQALSEAASGVDVNAAMAPVEELSDVCRRNRTVQEIVQGALKPLELNRVPVL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query976 2.2.26 [Sep-21-2011]
Q9Y5L0923 Transportin-3 OS=Homo sap yes no 0.858 0.907 0.252 1e-72
Q6P2B1923 Transportin-3 OS=Mus musc yes no 0.858 0.907 0.250 3e-71
Q9USZ2955 Uncharacterized protein C yes no 0.903 0.923 0.227 5e-53
Q99189972 mRNA transport regulator yes no 0.677 0.680 0.236 2e-33
Q8K0C1963 Importin-13 OS=Mus muscul no no 0.755 0.765 0.226 2e-27
A7YWD2963 Importin-13 OS=Bos taurus no no 0.759 0.769 0.219 2e-27
O94829963 Importin-13 OS=Homo sapie no no 0.757 0.767 0.218 4e-27
Q5R974963 Importin-13 OS=Pongo abel no no 0.757 0.767 0.217 7e-27
Q9JM04963 Importin-13 OS=Rattus nor no no 0.754 0.764 0.224 6e-26
Q5ZIC8958 Importin-13 OS=Gallus gal no no 0.854 0.870 0.221 4e-25
>sp|Q9Y5L0|TNPO3_HUMAN Transportin-3 OS=Homo sapiens GN=TNPO3 PE=1 SV=3 Back     alignment and function desciption
 Score =  275 bits (703), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 237/938 (25%), Positives = 424/938 (45%), Gaps = 100/938 (10%)

Query: 7   VKEALNALYHHPDDAVRMQADRWLQDFQHTIDAWQVADNLLHDATSNLETLIFCSQTLRS 66
           V +A+ ALYH PD + + +A  WL + Q ++ AW+++D LL     ++E+  F +QT++ 
Sbjct: 11  VYQAVQALYHDPDPSGKERASFWLGELQRSVHAWEISDQLLQ-IRQDVESCYFAAQTMKM 69

Query: 67  KVQRDVEELPSEAVRGLQDSLNTLLKKFHKGPPKVRTQISIAVAALAVHISAEDWGGGGI 126
           K+Q    ELP+++   L+DSL T ++      P + TQ+++A+A LA+ + +  W G   
Sbjct: 70  KIQTSFYELPTDSHASLRDSLLTHIQNLKDLSPVIVTQLALAIADLALQMPS--WKG--C 125

Query: 127 VNWLRDEMNSHPEFVPGFLELLTVLPEEVFNYKIAARPERRRQFEKELTSQMEVALSTLT 186
           V  L ++ ++    +P  LE+LTVLPEEV +  +     RR +  ++L       +S L 
Sbjct: 126 VQTLVEKYSNDVTSLPFLLEILTVLPEEVHSRSLRIGANRRTEIIEDLAFYSSTVVSLLM 185

Query: 187 ACLHINELKEQVL----EAFASWLRLKHRIPGSVLASHPLVLTALSSLHSEILSEASVNV 242
            C+      E++L        SW  L       VL S+ +    L +L  E+L +   + 
Sbjct: 186 TCVEKAGTDEKMLMKVFRCLGSWFNL------GVLDSNFMANNKLLALLFEVLQQ---DK 236

Query: 243 ISELIHYSAAGSSGGA-------TVNMPLIQVIVPQIMSLKA--HLTDSSKDEEDVKAIA 293
            S  +H +A+     A         N+PL   +   +++L+   H+  + +D + V    
Sbjct: 237 TSSNLHEAASDCVCSALYAIENVETNLPLAMQLFQGVLTLETAYHMAVAREDLDKVLNYC 296

Query: 294 RLFADMGDSYVELIATGSDESM---LIVHALLEVASHPEYDIASMTFNFWHSLQVILTKR 350
           R+F ++ ++++E I     + +     +  LL  A HP+Y++  ++FNFW+ L   L K 
Sbjct: 297 RIFTELCETFLEKIVCTPGQGLGDLRTLELLLICAGHPQYEVVEISFNFWYRLGEHLYKT 356

Query: 351 DSYISFGNEASAEAERSRRLQVFRSAYESLVSLVSFRVQYPQDYQDLSLE--DLKEFKHT 408
           +  +  G              +F++  + L+  ++   Q   D++ +  E  D  EF+  
Sbjct: 357 NDEVIHG--------------IFKAYIQRLLHALARHCQLEPDHEGVPEETDDFGEFR-- 400

Query: 409 RYDLACCSSSTLTESVMLIAVADVLIDAASVLGGDATLKILYIKFVEGVACCGNKHNEWR 468
                             + V+D++ D   ++G       LY    EG       +  W 
Sbjct: 401 ------------------MRVSDLVKDLIFLIGSMECFAQLYSTLKEG-------NPPWE 435

Query: 469 PAEAALFCIRAISTYVSVVEAEVMPQVMALLPKLPQQPQLLQTVC--LTIGAYSKWFDAA 526
             EA LF + AI+     V+ E  P ++ +L  + + P+ + T     +I    +  +  
Sbjct: 436 VTEAVLFIMAAIA---KSVDPENNPTLVEVLEGVVRLPETVHTAVRYTSIELVGEMSEVV 492

Query: 527 SSDPSILASVLSILTSGMSTSEDTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNG 586
             +P  L  VL  L  G+   +  A+AAA A  +IC  CR  +  + +GL  + R+    
Sbjct: 493 DRNPQFLDPVLGYLMKGLC-EKPLASAAAKAIHNICSVCRDHMAQHFNGLLEIARSL--- 548

Query: 587 EGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKH 646
             S  +S E ++ L++  ++V+  LP     + L  LC   V  L+++++Q P       
Sbjct: 549 -DSFLLSPEAAVGLLKGTALVLARLPLDKITECLSELCSVQVMALKKLLSQEPS---NGI 604

Query: 647 PRDLTVHIDRFAYIFRYVN--------HPEAVADAIQRLWPIFKAIFDIRAWDMRTMESL 698
             D TV +DR A IFR+ N        HP      IQ +WP+     +    D R +E  
Sbjct: 605 SSDPTVFLDRLAVIFRHTNPIVENGQTHP--CQKVIQEIWPVLSETLNKHRADNRIVERC 662

Query: 699 CRACKYAVRTSKRFMGITIGAILEEIQGLYQQHQQPCFLYLSSEVIKIFGSDPSCASYLH 758
           CR  ++AVR   +     +  ++ ++  +Y  HQ  CFLYL S ++  +G +  C   L 
Sbjct: 663 CRCLRFAVRCVGKGSAALLQPLVTQMVNVYHVHQHSCFLYLGSILVDEYGMEEGCRQGLL 722

Query: 759 NLIEALFKRTTCLLTSIEEFTSRPDVADDCFLLASRCIRYCPQLFIPSSVFPSLVDCSMI 818
           ++++AL   T  LL       + PD  DD F LA+R I+  P   + S V   ++  ++ 
Sbjct: 723 DMLQALCIPTFQLLEQQNGLQNHPDTVDDLFRLATRFIQRSPVTLLRSQVVIPILQWAIA 782

Query: 819 GITVQHREASNSILTFLSDIFDLAKSCKGEEFLSVRD----SVIIPRGASITRILIASLT 874
             T+ HR+A+ S++ FL D+     +   EE   +R      V+   G  +   L+ +  
Sbjct: 783 STTLDHRDANCSVMRFLRDLIHTGVANDHEEDFELRKELIGQVMNQLGQQLVSQLLHTCC 842

Query: 875 GALPSSRLETVTYALLALTRAYGVRSLEWAKESVSLIP 912
             LP   L  V   L  + +        W + S+  +P
Sbjct: 843 FCLPPYTLPDVAEVLWEIMQVDRPTFCRWLENSLKGLP 880
Seems to function in nuclear protein import as nuclear transport receptor. In vitro, mediates the nuclear import of splicing factor SR proteins RBM4, SFRS1 and SFRS2, by recognizing phosphorylated RS domains.
Homo sapiens (taxid: 9606)
>sp|Q6P2B1|TNPO3_MOUSE Transportin-3 OS=Mus musculus GN=Tnpo3 PE=1 SV=1 Back     alignment and function description
>sp|Q9USZ2|YNR7_SCHPO Uncharacterized protein C11G11.07 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC11G11.07 PE=4 SV=2 Back     alignment and function description
>sp|Q99189|MTR10_YEAST mRNA transport regulator MTR10 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MTR10 PE=1 SV=1 Back     alignment and function description
>sp|Q8K0C1|IPO13_MOUSE Importin-13 OS=Mus musculus GN=Ipo13 PE=2 SV=1 Back     alignment and function description
>sp|A7YWD2|IPO13_BOVIN Importin-13 OS=Bos taurus GN=IPO13 PE=2 SV=1 Back     alignment and function description
>sp|O94829|IPO13_HUMAN Importin-13 OS=Homo sapiens GN=IPO13 PE=1 SV=3 Back     alignment and function description
>sp|Q5R974|IPO13_PONAB Importin-13 OS=Pongo abelii GN=IPO13 PE=2 SV=1 Back     alignment and function description
>sp|Q9JM04|IPO13_RAT Importin-13 OS=Rattus norvegicus GN=Ipo13 PE=2 SV=1 Back     alignment and function description
>sp|Q5ZIC8|IPO13_CHICK Importin-13 OS=Gallus gallus GN=IPO13 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query976
225457174960 PREDICTED: transportin-3 [Vitis vinifera 0.981 0.997 0.834 0.0
449440732968 PREDICTED: transportin-3-like [Cucumis s 0.981 0.989 0.805 0.0
356562787960 PREDICTED: transportin-3-like isoform 1 0.981 0.997 0.811 0.0
255540833967 transportin, putative [Ricinus communis] 0.981 0.990 0.799 0.0
356562789968 PREDICTED: transportin-3-like isoform 2 0.981 0.989 0.804 0.0
356512770959 PREDICTED: transportin-3-like isoform 1 0.980 0.997 0.808 0.0
356512772967 PREDICTED: transportin-3-like isoform 2 0.980 0.989 0.801 0.0
297797229961 hypothetical protein ARALYDRAFT_496440 [ 0.976 0.991 0.739 0.0
42568712958 armadillo/beta-catenin-like repeat-conta 0.976 0.994 0.737 0.0
357146633964 PREDICTED: transportin-3-like [Brachypod 0.972 0.984 0.642 0.0
>gi|225457174|ref|XP_002283854.1| PREDICTED: transportin-3 [Vitis vinifera] gi|297733855|emb|CBI15102.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score = 1654 bits (4284), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 814/976 (83%), Positives = 881/976 (90%), Gaps = 18/976 (1%)

Query: 1   MELQNTVKEALNALYHHPDDAVRMQADRWLQDFQHTIDAWQVADNLLHDATSNLETLIFC 60
           MELQNTVKEALNALYHHPDD+VRMQADRWLQDFQ TIDAWQV+DNLLHDATSNLETLIFC
Sbjct: 1   MELQNTVKEALNALYHHPDDSVRMQADRWLQDFQRTIDAWQVSDNLLHDATSNLETLIFC 60

Query: 61  SQTLRSKVQRDVEELPSEAVRGLQDSLNTLLKKFHKGPPKVRTQISIAVAALAVHISAED 120
           SQTLRSKVQRD EELPSEA R L+DSLNTLLKKFHKGPPKVRTQISIAVAALAVH+ AED
Sbjct: 61  SQTLRSKVQRDFEELPSEAFRPLRDSLNTLLKKFHKGPPKVRTQISIAVAALAVHVPAED 120

Query: 121 WGGGGIVNWLRDEMNSHPEFVPGFLELLTVLPEEVFNYKIAARPERRRQFEKELTSQMEV 180
           WG GGIV WLRDEMNSHPEF+PGFLELL VLPEEVFNYKIAARPERRRQFEKELTS+MEV
Sbjct: 121 WGDGGIVKWLRDEMNSHPEFIPGFLELLMVLPEEVFNYKIAARPERRRQFEKELTSEMEV 180

Query: 181 ALSTLTACLHINELKEQVLEAFASWLRLKHRIPGSVLASHPLVLTALSSLHSEILSEASV 240
           AL+ LTACL+INELKEQVLEAFASWLRL+H IPG+VLASHPLVLTALSSL+SE+LSEASV
Sbjct: 181 ALNILTACLNINELKEQVLEAFASWLRLRHGIPGAVLASHPLVLTALSSLNSELLSEASV 240

Query: 241 NVISELIHYSAAGSSGGATVNMPLIQVIVPQIMSLKAHLTDSSKDEEDVKAIARLFADMG 300
           NV+SELIHY+ AGSSGGA+V +PLIQVIVPQ+M+LK  L DSSKDEEDVKAI RLFADMG
Sbjct: 241 NVVSELIHYTTAGSSGGASVQIPLIQVIVPQVMNLKVQLRDSSKDEEDVKAIGRLFADMG 300

Query: 301 DSYVELIATGSDESMLIVHALLEVASHPEYDIASMTFNFWHSLQVILTKRDSYISFGNEA 360
           DSYVELIATGSDESMLIVHALLEVASHPEYDIASMTFNFWH+LQV LTKRD+Y+SFGNEA
Sbjct: 301 DSYVELIATGSDESMLIVHALLEVASHPEYDIASMTFNFWHNLQVNLTKRDAYLSFGNEA 360

Query: 361 SAEAERSRRLQVFRSAYESLVSLVSFRVQYPQDYQDLSLEDLKEFKHTRYDLACCSSSTL 420
           S EAER+RRLQVFRS+YESLVSLVS RV+YP+DYQDLS EDLK+FK TRY          
Sbjct: 361 SIEAERNRRLQVFRSSYESLVSLVSSRVRYPEDYQDLSYEDLKDFKQTRY---------- 410

Query: 421 TESVMLIAVADVLIDAASVLGGDATLKILYIKFVEGVACCGNK-HNEWRPAEAALFCIRA 479
                  AVADVLIDAASVLGG+ATLKILY+K VE VA CGN+ HNEWRPAEAAL+CIRA
Sbjct: 411 -------AVADVLIDAASVLGGEATLKILYMKLVEAVASCGNEEHNEWRPAEAALYCIRA 463

Query: 480 ISTYVSVVEAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSI 539
           IS YVSVVEAEVMPQVM +LPKLP QPQLLQTVCLTIGAYSKW DAA    SI  SV+ I
Sbjct: 464 ISNYVSVVEAEVMPQVMNMLPKLPHQPQLLQTVCLTIGAYSKWLDAAPGGLSIFPSVIDI 523

Query: 540 LTSGMSTSEDTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLH 599
           L SGMS SED+AAAAALAF+HICDDCRKKLCG LDGL+++Y  AVNGEG+ KV AEDSLH
Sbjct: 524 LMSGMSISEDSAAAAALAFKHICDDCRKKLCGSLDGLFHIYHRAVNGEGNFKVPAEDSLH 583

Query: 600 LVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAY 659
           LVEALSMVITELP   AKKALE LCLPVVT LQE++NQGPEIL KK  R+ TVHIDRFAY
Sbjct: 584 LVEALSMVITELPPDHAKKALEALCLPVVTSLQEVVNQGPEILDKKVAREFTVHIDRFAY 643

Query: 660 IFRYVNHPEAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRACKYAVRTSKRFMGITIGA 719
           IFRYVNHPEAVADAIQRLWPIFKAIFD+RAWDMRTMESLCRACKYAVRTS RFMGITIGA
Sbjct: 644 IFRYVNHPEAVADAIQRLWPIFKAIFDVRAWDMRTMESLCRACKYAVRTSGRFMGITIGA 703

Query: 720 ILEEIQGLYQQHQQPCFLYLSSEVIKIFGSDPSCASYLHNLIEALFKRTTCLLTSIEEFT 779
           +LEEIQGLYQ H QPCFLYLSSEVIKIFGSDPSCA+YL NLIEALF  TTCLL +I EFT
Sbjct: 704 MLEEIQGLYQLHHQPCFLYLSSEVIKIFGSDPSCANYLKNLIEALFSHTTCLLKNIREFT 763

Query: 780 SRPDVADDCFLLASRCIRYCPQLFIPSSVFPSLVDCSMIGITVQHREASNSILTFLSDIF 839
           +RPD+ADDCFLLASRCIRYCPQLFIPS+VFPSLVDCSMIG+TVQHREASNSILTFLSDIF
Sbjct: 764 ARPDIADDCFLLASRCIRYCPQLFIPSAVFPSLVDCSMIGVTVQHREASNSILTFLSDIF 823

Query: 840 DLAKSCKGEEFLSVRDSVIIPRGASITRILIASLTGALPSSRLETVTYALLALTRAYGVR 899
           DLAK+  GE++ S+RD+VIIPRGASITRILIA LTGALPSSRLETVTYALLALTRAYG++
Sbjct: 824 DLAKTSPGEQYQSIRDTVIIPRGASITRILIACLTGALPSSRLETVTYALLALTRAYGMK 883

Query: 900 SLEWAKESVSLIPLTALAEVERSRFLQALSEAASGVDVNAAMAPVEELSDVCRRNRTVQE 959
           ++EWAK+ +SL+PLTA+ EVER+RFLQ LS  A+G D+N     +EELSDVCRRNRTVQE
Sbjct: 884 AVEWAKDCISLVPLTAVTEVERTRFLQTLSNVATGADINTLTVSMEELSDVCRRNRTVQE 943

Query: 960 IVQGALKPLELNRVPV 975
           IVQGAL+P ELN  PV
Sbjct: 944 IVQGALRPHELNLAPV 959

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|449440732|ref|XP_004138138.1| PREDICTED: transportin-3-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356562787|ref|XP_003549650.1| PREDICTED: transportin-3-like isoform 1 [Glycine max] Back     alignment and taxonomy information
>gi|255540833|ref|XP_002511481.1| transportin, putative [Ricinus communis] gi|223550596|gb|EEF52083.1| transportin, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356562789|ref|XP_003549651.1| PREDICTED: transportin-3-like isoform 2 [Glycine max] Back     alignment and taxonomy information
>gi|356512770|ref|XP_003525089.1| PREDICTED: transportin-3-like isoform 1 [Glycine max] Back     alignment and taxonomy information
>gi|356512772|ref|XP_003525090.1| PREDICTED: transportin-3-like isoform 2 [Glycine max] Back     alignment and taxonomy information
>gi|297797229|ref|XP_002866499.1| hypothetical protein ARALYDRAFT_496440 [Arabidopsis lyrata subsp. lyrata] gi|297312334|gb|EFH42758.1| hypothetical protein ARALYDRAFT_496440 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|42568712|ref|NP_201066.2| armadillo/beta-catenin-like repeat-containing protein [Arabidopsis thaliana] gi|27311605|gb|AAO00768.1| unknown protein [Arabidopsis thaliana] gi|34365727|gb|AAQ65175.1| At5g62590 [Arabidopsis thaliana] gi|110739500|dbj|BAF01659.1| hypothetical protein [Arabidopsis thaliana] gi|110741326|dbj|BAF02213.1| hypothetical protein [Arabidopsis thaliana] gi|332010246|gb|AED97629.1| armadillo/beta-catenin-like repeat-containing protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|357146633|ref|XP_003574061.1| PREDICTED: transportin-3-like [Brachypodium distachyon] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query976
TAIR|locus:2154159958 MOS14 "AT5G62600" [Arabidopsis 0.608 0.620 0.642 0.0
UNIPROTKB|A5D7C4923 TNPO3 "TNPO3 protein" [Bos tau 0.477 0.504 0.247 1.2e-64
UNIPROTKB|Q9Y5L0923 TNPO3 "Transportin-3" [Homo sa 0.477 0.504 0.241 2.2e-64
MGI|MGI:1196412923 Tnpo3 "transportin 3" [Mus mus 0.477 0.504 0.239 3.5e-64
ZFIN|ZDB-GENE-040426-708923 tnpo3 "transportin 3" [Danio r 0.451 0.477 0.246 1.4e-63
RGD|1308938929 Tnpo3 "transportin 3" [Rattus 0.349 0.367 0.268 1.6e-63
FB|FBgn0031456932 Trn-SR "Transportin-Serine/Arg 0.517 0.541 0.246 5e-63
UNIPROTKB|C9J7E5957 TNPO3 "Uncharacterized protein 0.352 0.359 0.269 2.6e-62
UNIPROTKB|F1SMQ0921 TNPO3 "Uncharacterized protein 0.352 0.373 0.269 4.5e-62
UNIPROTKB|E9PFH4857 TNPO3 "Transportin-3" [Homo sa 0.477 0.543 0.241 1.2e-52
TAIR|locus:2154159 MOS14 "AT5G62600" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1911 (677.8 bits), Expect = 0., Sum P(2) = 0.
 Identities = 392/610 (64%), Positives = 453/610 (74%)

Query:   374 RSAYESLVSLVSFRVQ-------YPQDYQDLSLEDLKEFKHTRY--DLACCSSSTLTESV 424
             R +Y SL S  S  V+       +   YQ  SL  L  F+  +Y  D    S   L E  
Sbjct:   350 RESYSSLGSEASIEVERNRRLHIFQPAYQ--SLVSLVGFR-VQYPEDYQGLSYEDLKEFK 406

Query:   425 ML-IAVADVLIDAASVLGGDATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTY 483
                 AVADVLIDAA +LGGD TLKILY+K +E  A  GN   +WRPAEA LFCI AIS Y
Sbjct:   407 QTRYAVADVLIDAALILGGDTTLKILYMKLLEANAQTGNNFQDWRPAEAILFCIWAISNY 466

Query:   484 VSVVEAEVMPQVMAXXXXXXXXXXXXXTVCLTIGAYSKWFDAASSDPSILASVLSILTSG 543
             VSVVEAEVMPQVMA             T CL +GAYSKW +AA +  SIL S++ IL SG
Sbjct:   467 VSVVEAEVMPQVMALLQNLPQQAQLLQTACLLVGAYSKWLNAAPASVSILPSIIRILMSG 526

Query:   544 MSTSEDTXXXXXXXFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEA 603
             M TSED        FRH CDDCRK LCGY + L+N+Y  A+NG G  KVSAEDSL+LVEA
Sbjct:   527 MGTSEDCAAAAALAFRHTCDDCRKNLCGYFEDLFNIYCMAINGGGGYKVSAEDSLNLVEA 586

Query:   604 LSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRY 663
             L MV+TELP   AK ALE LC    +PL+E      E L+KKH R+LTVHIDRFA++FRY
Sbjct:   587 LGMVVTELPLDQAKGALEKLCFSAASPLEEAAK---EDLEKKHARELTVHIDRFAFLFRY 643

Query:   664 VNHPEAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRACKYAVRTSKRFMGITIGAILEE 723
             VNHPEAVA  I + W IF+ IFD R WDMRTMESLCRACKYAVRTS R++  TIG +LE+
Sbjct:   644 VNHPEAVAAEINKHWAIFRVIFDARPWDMRTMESLCRACKYAVRTSGRYIIDTIGEMLEK 703

Query:   724 IQGLYQQHQQPCFLYLSSEVIKIFGSDPSCASYLHNLIEALFKRTTCLLTSIEEFTSRPD 783
             IQ  YQQH QPCFLYLSSEVIKIFGSDPSCA YL NLIE LF  TTCL+TSI+E T+RPD
Sbjct:   704 IQFHYQQHHQPCFLYLSSEVIKIFGSDPSCAVYLKNLIETLFAHTTCLMTSIKEVTARPD 763

Query:   784 VADDCFLLASRCIRYCPQLFIPSSVFPSLVDCSMIGITVQHREASNSILTFLSDIFDLAK 843
             +ADDCFLLASRC+RYCP LFIPS +FP+LV+C+MIGITVQHREA +SILTFL+DIFDL K
Sbjct:   764 IADDCFLLASRCLRYCPHLFIPSPIFPALVNCAMIGITVQHREACHSILTFLTDIFDLEK 823

Query:   844 SCKGEEFLSVRDSVIIPRGASITRILIASLTGALPSSRLETVTYALLALTRAYGVRSLEW 903
             S   E+F+ +RD++IIPRGA+ITRILIASL GALPSSRL+TVTY+LLALTR Y ++++ W
Sbjct:   824 SVNEEQFVRIRDNIIIPRGATITRILIASLAGALPSSRLDTVTYSLLALTRTYRLQAVSW 883

Query:   904 AKESVSLIPLTALAEVERSRFLQALSEAASGVDVNAAMAPVEELSDVCRRNRTVQEIVQG 963
             AKESVSLIP TAL E E ++FLQALS+ A G DVN+ +  VEELSDVCRRNRTVQE+VQ 
Sbjct:   884 AKESVSLIPRTALTETESTKFLQALSDIAYGADVNSLIGQVEELSDVCRRNRTVQELVQA 943

Query:   964 ALKPLELNRV 973
             ALKPLELN V
Sbjct:   944 ALKPLELNLV 953
GO:0005634 "nucleus" evidence=IDA
GO:0006606 "protein import into nucleus" evidence=IMP
GO:0043484 "regulation of RNA splicing" evidence=IMP
UNIPROTKB|A5D7C4 TNPO3 "TNPO3 protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q9Y5L0 TNPO3 "Transportin-3" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:1196412 Tnpo3 "transportin 3" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040426-708 tnpo3 "transportin 3" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
RGD|1308938 Tnpo3 "transportin 3" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
FB|FBgn0031456 Trn-SR "Transportin-Serine/Arginine rich" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|C9J7E5 TNPO3 "Uncharacterized protein" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1SMQ0 TNPO3 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|E9PFH4 TNPO3 "Transportin-3" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query976
pfam08389147 pfam08389, Xpo1, Exportin 1-like protein 6e-18
COG51011053 COG5101, CRM1, Importin beta-related nuclear trans 2e-05
smart0091367 smart00913, IBN_N, Importin-beta N-terminal domain 0.001
>gnl|CDD|219817 pfam08389, Xpo1, Exportin 1-like protein Back     alignment and domain information 
 Score = 81.1 bits (201), Expect = 6e-18
 Identities = 42/152 (27%), Positives = 67/152 (44%), Gaps = 11/152 (7%)

Query: 98  PPKVRTQISIAVAALAVHISAEDWGGGGIVNWLRDEMNSHPEFVPGFLELLTVLPEEVFN 157
           P  +R ++++A+A LA      +W        L   ++S P      L +L VLPEE+F+
Sbjct: 1   PKFIRNKLALALAELAKQEWPSNWPT--FFPDLVSLLSSSPSGCELLLRILKVLPEEIFD 58

Query: 158 Y-KIAARPERRRQFEKELTSQMEVALSTLTACLHIN-----ELKEQVLEAFASWLRLKHR 211
           + +     +RR + +  L SQM   L  L   L  +     EL    L+   SWL     
Sbjct: 59  FSRTPLTQQRRNRLKDLLRSQMPQILELLLQILENSVSAHSELLSATLKCLGSWLS---W 115

Query: 212 IPGSVLASHPLVLTALSSLHSEILSEASVNVI 243
           IP  ++ + PL+      L    L EA+V  +
Sbjct: 116 IPIGLILNDPLLNLLFQLLSDPDLREAAVECL 147

The sequences featured in this family are similar to a region close to the N-terminus of yeast exportin 1 (Xpo1, Crm1). This region is found just C-terminal to an importin-beta N-terminal domain (pfam03810) in many members of this family. Exportin 1 is a nuclear export receptor that interacts with leucine-rich nuclear export signal (NES) sequences, and Ran-GTP, and is involved in translocation of proteins out of the nucleus. Length = 147
>gnl|CDD|227432 COG5101, CRM1, Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion] Back     alignment and domain information
>gnl|CDD|197981 smart00913, IBN_N, Importin-beta N-terminal domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 976
KOG2022982 consensus Nuclear transport receptor LGL2 (importi 100.0
KOG2021980 consensus Nuclear mRNA export factor receptor LOS1 100.0
KOG2081559 consensus Nuclear transport regulator [Intracellul 100.0
COG51011053 CRM1 Importin beta-related nuclear transport recep 100.0
KOG2023885 consensus Nuclear transport receptor Karyopherin-b 100.0
KOG2171 1075 consensus Karyopherin (importin) beta 3 [Nuclear s 100.0
KOG19911010 consensus Nuclear transport receptor RANBP7/RANBP8 100.0
KOG20201041 consensus Nuclear transport receptor CRM1/MSN5 (im 100.0
KOG1241859 consensus Karyopherin (importin) beta 1 [Nuclear s 100.0
COG5215858 KAP95 Karyopherin (importin) beta [Intracellular t 99.93
KOG1992960 consensus Nuclear export receptor CSE1/CAS (import 99.91
COG5656970 SXM1 Importin, protein involved in nuclear import 99.89
KOG14101082 consensus Nuclear transport receptor RanBP16 (impo 99.86
KOG22741005 consensus Predicted importin 9 [Intracellular traf 99.74
PF08389148 Xpo1: Exportin 1-like protein; InterPro: IPR013598 99.69
KOG1993978 consensus Nuclear transport receptor KAP120 (impor 99.68
PF08767319 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 99.52
COG5657947 CSE1 CAS/CSE protein involved in chromosome segreg 99.4
KOG2171 1075 consensus Karyopherin (importin) beta 3 [Nuclear s 99.39
KOG1241859 consensus Karyopherin (importin) beta 1 [Nuclear s 99.13
KOG1824 1233 consensus TATA-binding protein-interacting protein 98.98
PF0381077 IBN_N: Importin-beta N-terminal domain; InterPro: 98.92
KOG2023885 consensus Nuclear transport receptor Karyopherin-b 98.9
PF08506370 Cse1: Cse1; InterPro: IPR013713 The exchange of ma 98.46
KOG0915 1702 consensus Uncharacterized conserved protein [Funct 98.14
COG5215858 KAP95 Karyopherin (importin) beta [Intracellular t 98.12
KOG4541748 consensus Nuclear transport receptor exportin 4 (i 98.08
KOG02131172 consensus Splicing factor 3b, subunit 1 [RNA proce 97.61
KOG1824 1233 consensus TATA-binding protein-interacting protein 97.59
PF01602526 Adaptin_N: Adaptin N terminal region; InterPro: IP 97.57
PF03378435 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: I 97.52
KOG1242569 consensus Protein containing adaptin N-terminal re 97.5
PF01602526 Adaptin_N: Adaptin N terminal region; InterPro: IP 97.05
KOG0212 675 consensus Uncharacterized conserved protein [Funct 96.93
KOG0915 1702 consensus Uncharacterized conserved protein [Funct 96.83
KOG1991 1010 consensus Nuclear transport receptor RANBP7/RANBP8 96.05
PTZ00429746 beta-adaptin; Provisional 95.97
KOG1248 1176 consensus Uncharacterized conserved protein [Funct 95.67
PF10508503 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; 95.56
KOG1992 960 consensus Nuclear export receptor CSE1/CAS (import 95.38
PF1275597 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region 95.31
KOG1059877 consensus Vesicle coat complex AP-3, delta subunit 95.3
PLN03200 2102 cellulose synthase-interactive protein; Provisiona 94.76
PF14500262 MMS19_N: Dos2-interacting transcription regulator 94.52
smart00802107 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. 94.29
KOG1062866 consensus Vesicle coat complex AP-1, gamma subunit 94.07
PTZ00429 746 beta-adaptin; Provisional 93.76
KOG0212 675 consensus Uncharacterized conserved protein [Funct 93.62
KOG2081 559 consensus Nuclear transport regulator [Intracellul 93.29
PF1275597 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region 92.92
PF10508503 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; 92.89
PF12460415 MMS19_C: RNAPII transcription regulator C-terminal 92.87
PF08767319 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 92.86
PF08064107 UME: UME (NUC010) domain; InterPro: IPR012993 This 92.85
KOG0213 1172 consensus Splicing factor 3b, subunit 1 [RNA proce 92.54
COG5064526 SRP1 Karyopherin (importin) alpha [Intracellular t 92.44
PF1351355 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O 92.4
KOG2274 1005 consensus Predicted importin 9 [Intracellular traf 91.66
PF12348228 CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi 91.64
PF12460415 MMS19_C: RNAPII transcription regulator C-terminal 91.52
cd00020120 ARM Armadillo/beta-catenin-like repeats. An approx 91.07
PF03378435 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: I 90.76
PF1351355 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O 89.37
PF12348228 CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi 89.27
KOG1242569 consensus Protein containing adaptin N-terminal re 88.56
PF0298531 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re 88.19
KOG0166514 consensus Karyopherin (importin) alpha [Intracellu 87.64
PRK09687280 putative lyase; Provisional 87.31
KOG1059 877 consensus Vesicle coat complex AP-3, delta subunit 86.9
PF08167165 RIX1: rRNA processing/ribosome biogenesis 86.66
PLN03200 2102 cellulose synthase-interactive protein; Provisiona 84.97
PF12717178 Cnd1: non-SMC mitotic condensation complex subunit 83.88
PRK09687280 putative lyase; Provisional 83.48
PF05918 556 API5: Apoptosis inhibitory protein 5 (API5); Inter 82.85
KOG1058948 consensus Vesicle coat complex COPI, beta subunit 82.84
PF10274183 ParcG: Parkin co-regulated protein; InterPro: IPR0 82.29
KOG1993978 consensus Nuclear transport receptor KAP120 (impor 81.93
KOG2213460 consensus Apoptosis inhibitor 5/fibroblast growth 81.25
PF12719298 Cnd3: Nuclear condensing complex subunits, C-term 80.12
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information 
Probab=100.00  E-value=1.3e-95  Score=805.16  Aligned_cols=896  Identities=20%  Similarity=0.330  Sum_probs=754.7

Q ss_pred             Cch--HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhHHHHHHHHhhcCCCchHHHHHHHHHHHHHhhcCCCCCChh
Q 002041            1 MEL--QNTVKEALNALYHHPDDAVRMQADRWLQDFQHTIDAWQVADNLLHDATSNLETLIFCSQTLRSKVQRDVEELPSE   78 (976)
Q Consensus         1 ~~~--~~~v~~al~~ly~~~d~~~r~~A~~~L~~~q~s~~aw~~~~~lL~~~~~~~~v~ffaa~~L~~ki~~~w~~l~~~   78 (976)
                      |+.  +++|++++..+|++++++.++.+++||++.|.|+.+|++.++|++. ++..++|||||.||+.||+++|++++++
T Consensus         1 md~~~Ia~v~~~v~~lY~~~~~~~~a~~qk~Lq~aq~S~Q~w~~s~~llQ~-~k~~evqyFGAltL~~ki~~~~e~~~~~   79 (982)
T KOG2022|consen    1 MDSDLIATVEELVTTLYSHRNHENDAITQKWLQDAQCSQQGWHFSWQLLQP-DKSSEVQYFGALTLHDKINTRWEECPAN   79 (982)
T ss_pred             CCchHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhHHHHHHHHHHcCC-CchhHHHHHhHHHHHHHHHhhhccCChh
Confidence            555  8999999999999999999999999999999999999999999985 6888999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhccccccCCccchHHHHHhcCC--CC-----CcHHHHHHHHhhc
Q 002041           79 AVRGLQDSLNTLLKKFHKGPPKVRTQISIAVAALAVHISAEDWGGGGIVNWLRDEMNS--HP-----EFVPGFLELLTVL  151 (976)
Q Consensus        79 ~~~~lr~~Ll~~l~~~~~~~~~v~~kL~~~La~l~~~~~~~~W~~~~~~~~l~~~l~~--~~-----~~~~~~L~~L~~l  151 (976)
                      ++..|+..++..+..++.+|+.|.+|+|.++|.+.+++-++.||+  .+.+++..+.+  .|     -.+..+|+.|+.+
T Consensus        80 ~~~qL~~klf~~l~~~~g~~~lVl~kl~~sLasl~l~~~~d~Wp~--ai~~vi~~l~~q~~p~v~ad~n~~~~Le~Ls~~  157 (982)
T KOG2022|consen   80 EAVQLKLKLFLILSRFAGGPKLVLNKLCASLASLILYMVPDLWPT--AIQDVIPTLQGQASPLVLADINCEILLEVLSFM  157 (982)
T ss_pred             HHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHccccCCc--hHHHHHHHHhcccCccccchhhHHHHHHHhccC
Confidence            999999999999999999999999999999999999998899999  78998888865  33     2467899999999


Q ss_pred             ccccccccccCChhHHHHHHHHHHHhHHHHHHHHHHhhhhh----------HHHHHHHHHHHHhhhccCCCCCcccccch
Q 002041          152 PEEVFNYKIAARPERRRQFEKELTSQMEVALSTLTACLHIN----------ELKEQVLEAFASWLRLKHRIPGSVLASHP  221 (976)
Q Consensus       152 ~EE~~~~~~~~~~~~r~~l~~~l~~~~~~vl~~l~~~l~~~----------~~~~~~l~~~~sWi~~~~~i~~~~l~~~~  221 (976)
                      |+|..+..++  -.||..++.++......+..++..++...          .....+++|+.+|+.+. ..+.  .....
T Consensus       158 p~e~q~~~l~--~t~~~~l~~eLak~~~~v~~l~e~vlr~~~n~t~s~~~~i~~~~a~dCv~~Wi~~i-~~~~--~~c~~  232 (982)
T KOG2022|consen  158 PAEFQHVTLP--LTRRSVLRGELAKFSENVISLLEVVLRGGSNSTSSLINLIFKQAAVDCVEQWIRYI-SLTG--MDCDQ  232 (982)
T ss_pred             cHhhhhccch--hHHHHHHHHHHHHHHHHHhHHHHHHHhccccccHHHHHHHhhhHHHHHHHHHHHHh-cccc--ccHHH
Confidence            9999876654  56788999999999999999888887653          24678999999999963 2332  33334


Q ss_pred             hHHHHHhcCCC--c---chHHHHHHHHHHHh------------hhh-ccCCCCCccCchhHHHHHHHHHHh----hHHHh
Q 002041          222 LVLTALSSLHS--E---ILSEASVNVISELI------------HYS-AAGSSGGATVNMPLIQVIVPQIMS----LKAHL  279 (976)
Q Consensus       222 l~~~~~~~L~~--~---~~~~~a~~~l~~ii------------~~~-~~~~~~~~~~~~~~i~~l~~~v~~----l~~~~  279 (976)
                      +++.++..++.  .   +.++.+++.....+            ... ...++    .....+-.++.+..+    ..+..
T Consensus       233 i~~~ll~~l~~s~~~~~~a~~~cmt~~~n~la~~~l~~~v~~i~q~d~~~y~----nti~~li~i~~~~l~e~~~~~~~~  308 (982)
T KOG2022|consen  233 ITQVLLDVLGQSTEGSYEAAEKCMTIFGNVLADDTLLASVNDIIQPDCEFYR----NTITLLISICLGILQEVSGKIQEE  308 (982)
T ss_pred             HHHHHHHHHhhhccccccchhhhcccchhhhccchHHHHHHHhcChHHHhcc----chHHHHHHHHHHHHHHHHHHHHHH
Confidence            55555555541  1   11222222111111            111 11111    112223333333221    11222


Q ss_pred             hhccCCHHHHHHHHHHHHHHhhHHHHHHhcCC------chhHHHHHHHHhhccCCC-----cchhhhhHHHHHHHHHHhc
Q 002041          280 TDSSKDEEDVKAIARLFADMGDSYVELIATGS------DESMLIVHALLEVASHPE-----YDIASMTFNFWHSLQVILT  348 (976)
Q Consensus       280 ~~~~~d~e~~~~~~~l~~~~~~~~~~~l~~~~------~~~~~ll~~lL~~~~~~~-----~~vs~~~l~fW~~l~~~l~  348 (976)
                      .+++..+|.+..++++++..+|++.+.+..+.      +.+..+++.|+.|++.|+     +.+|..++.||+.|.+++.
T Consensus       309 e~~d~~~e~i~~~~~i~v~~~En~l~~lid~~~~g~~~e~v~rlv~vll~~t~~PG~ypveE~~S~~~l~FW~tL~dei~  388 (982)
T KOG2022|consen  309 ENADASEEEIVTFLAITVSSVENHLPTLIDCAAQGEQSELVIRLVQVLLVLTNFPGQYPVEEIVSDRTLIFWYTLQDEIM  388 (982)
T ss_pred             hCCCchhHHHHHHHHHHHHHHhcccHHHHHHHhhcchHHHHHHHHHHHHHHhCCCCCccHHHHHhHHHHHHHHHHHHHHH
Confidence            23333467788999999999999988776532      246789999999999984     6789999999999999886


Q ss_pred             ccccccccCcccchHHHHHHHHHhhH-HHHHHHHHHHHhhccCCCC--CCCCChhhhHHhHhhhhcccccCCccchhhhh
Q 002041          349 KRDSYISFGNEASAEAERSRRLQVFR-SAYESLVSLVSFRVQYPQD--YQDLSLEDLKEFKHTRYDLACCSSSTLTESVM  425 (976)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Ll~~l~~k~~~p~d--~~~~~~d~~~~f~~~R~~~~~~~~~~~~~~~~  425 (976)
                      ...      ++.     .+.....|+ |+|.+|+++++.|+.+|.+  +..|+.|++++|++||++              
T Consensus       389 ~~~------~e~-----~~~~~~i~~~qIy~qlvei~l~K~~~Ps~e~~~~W~S~s~e~F~~YR~d--------------  443 (982)
T KOG2022|consen  389 QTI------NET-----QQIKKQILSQQIYAQLVEILLKKLALPSKEIWLSWSSDSREQFESYRKD--------------  443 (982)
T ss_pred             Hhh------hcc-----CCcchhHHHHHHHHHHHHHHHHHhcCCCHHHhccCCcchHHHHHHHHHH--------------
Confidence            421      111     111233455 9999999999999999974  678999999999999999              


Q ss_pred             hhhhhhHHHHHHhhcChhHHHHHHHHHHHHhHhhcCCCCCCcchhhHHHHHHHHhhcccCcccccchHHHhhhccCCC-C
Q 002041          426 LIAVADVLIDAASVLGGDATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVVEAEVMPQVMALLPKLP-Q  504 (976)
Q Consensus       426 ~~~~~d~l~~~~~~l~~~~~l~~l~~~l~~~~~~~~~~~~~w~~~Ea~L~~l~~i~e~~~~~~~~~l~~l~~~l~~~~-~  504 (976)
                         ++|+++++|+++| +.+++.+++.+.+....+..++.+|.+.|+|+|++.++++.+..+++..++.+|+...+.+ +
T Consensus       444 ---iSD~~~~~Y~ilg-d~ll~~L~~~l~q~~aa~d~~p~s~~~tEaci~~~~sva~~~~~t~~~~i~rl~~~~asik~S  519 (982)
T KOG2022|consen  444 ---ISDLLMSSYSILG-DGLLDFLIDTLEQALAAGDEDPDSLNRTEACIFQFQSVAEYLGETESTWIPRLFETSASIKLS  519 (982)
T ss_pred             ---HHHHHHHHHHHHh-HHHHHHHHHHHHHhhhccCCCchHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHhccccccc
Confidence               9999999999999 8899999999998876544346789999999999999999999999999999999987654 2


Q ss_pred             --cHHHHHHHHHHHHhcHHHHhhCCCCcchHHHHHHHHHcccCCChHHHHHHHHHHHHHHHHhhhhhhcCHHHHHHHHHH
Q 002041          505 --QPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSEDTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRT  582 (976)
Q Consensus       505 --~~~v~~t~~~~ig~y~~~~~~~p~~~~~l~~~l~~l~~~l~~~~~v~~~A~~al~~l~~~~~~~L~~~l~~ll~~~~~  582 (976)
                        +|.+..|+..+||.|+.|+..||.   ++.+.++.+++|+++++ ....|...+++||++|+.+|.||+++|+..+..
T Consensus       520 ~~n~ql~~Tss~~igs~s~~l~e~P~---~ln~sl~~L~~~Lh~sk-~s~q~i~tl~tlC~~C~~~L~py~d~~~a~~~e  595 (982)
T KOG2022|consen  520 APNPQLLSTSSDLIGSLSNWLGEHPM---YLNPSLPLLFQGLHNSK-ESEQAISTLKTLCETCPESLDPYADQFSAVCYE  595 (982)
T ss_pred             cCChhHHHHHHHHHHHHHHHHhcCCc---ccCchHHHHHHHhcCch-HHHHHHHHHHHHHHhhhhhCchHHHHHHHHHHH
Confidence              799999999999999999999998   99999999999999988 788888889999999999999999999999999


Q ss_pred             HhhccCCCCCCHHhHHHHHHHHHHHHhcCChHHHHHHHHHhhhHHHHHHHHHHhcCCCcccccCcchhhhHHHHHHHHhh
Q 002041          583 AVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFR  662 (976)
Q Consensus       583 ~~~~~~~~~l~~~~~~~l~eai~~vi~~~p~~~~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~  662 (976)
                      +++..   .+.+.++.+++.+||+|++.+.+|++.+|+.++++|+++.++.++.....+  +.+...++..+.+++++|.
T Consensus       596 ~l~~~---~~~~S~~~klm~sIGyvls~~~pEe~~kyl~~lin~il~qle~~l~~~i~~--~e~~l~~~~~l~~iS~Lft  670 (982)
T KOG2022|consen  596 VLNKS---NAKDSDRLKLMKSIGYVLSRLKPEEIPKYLMKLINPILSQLEINLAPGIDD--QENHLRIAFQLNTISALFT  670 (982)
T ss_pred             Hhccc---ccCchHHHHHHHHHHHHHHhccHHhHHHHHHHHHHHHHHHHHHhhcCCCCC--HHHHHHHHHHHHHHHHHHh
Confidence            98763   577899999999999999999999999999999999999999987765432  2234456678899999999


Q ss_pred             hcCCc------------------ccHHHHHHHHhHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhhhhh-hhhHHHHHHH
Q 002041          663 YVNHP------------------EAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRACKYAVRTSKRFM-GITIGAILEE  723 (976)
Q Consensus       663 ~~~~~------------------~~~~~~~~~~~~~l~~ll~~~~~~~~v~e~~~~~~~~~~~~~~~~~-~~~l~~l~~~  723 (976)
                      ++..+                  .|++++.++++|+++++++.+-++.+++|.+|.+.++.++..++.+ .|++|.++.+
T Consensus       671 SL~~~~~~~d~d~~~~~~~~~qq~~il~v~~k~i~~~~kv~s~~~~~s~vve~~C~i~~~~v~~~~~sF~~p~l~~l~~F  750 (982)
T KOG2022|consen  671 SLINKKDIIDTDQPEQREEPFQQFPILQVLQKAIPVFEKVLSMWLGLSDVVEASCIIMVKGVRSLLTSFPEPMLPSLCPF  750 (982)
T ss_pred             ccCCCCccccccchhhhccccccCCHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHhccccccccchhhhHHHHHHH
Confidence            98531                  2688899999999999999999999999999999999998877766 8999999999


Q ss_pred             HHHHHhhcCCccHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHhhhcCcccCCCCCccHHHHHHHHHHHHhhCCCcc
Q 002041          724 IQGLYQQHQQPCFLYLSSEVIKIFGSDPSCASYLHNLIEALFKRTTCLLTSIEEFTSRPDVADDCFLLASRCIRYCPQLF  803 (976)
Q Consensus       724 l~~~~~~~~~~~~L~l~~~li~~~~~~~~~~~~l~~~~~~l~~~~~~~l~~~~~~~~~pD~~~~~f~l~~~~~~~~p~~~  803 (976)
                      +.. |.+.+...-+.+...++..+..++.+.+.+...+...++.++.++++.. +.++||+...++.++..++++.|+.+
T Consensus       751 i~r-~~~~~~a~tl~l~~~~l~~~~~~~~~~~lv~~~~~~~~q~sl~lf~~~~-f~n~~Di~~~~~~~v~~ilkk~P~~~  828 (982)
T KOG2022|consen  751 IVR-FLTSCLAVTLSLIAACLLAKSTVEQCKPLVGQDMANAFQQSLLLFEQHP-FSNQPDIYLQLIGFVRQILKKIPKFL  828 (982)
T ss_pred             HHH-hccchHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHHhccC-CCCCchHHHHHHHHHHHHHHhCcCcc
Confidence            998 9888888889999999998888888999998888888899988888633 79999999999999999999999999


Q ss_pred             cC-cCChHHHHH-HHHHhcccCCchhHHHHHHHHHHhhcccCCCCchhhHHHHHHHHhhchHHHHHHHHHHcccCCCCCC
Q 002041          804 IP-SSVFPSLVD-CSMIGITVQHREASNSILTFLSDIFDLAKSCKGEEFLSVRDSVIIPRGASITRILIASLTGALPSSR  881 (976)
Q Consensus       804 ~~-~~~l~~~~~-~~~~~l~~~~~~~~~~~~~fl~~l~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~ll~~l~~~~~~~~  881 (976)
                      .+ ...+.+++. +++..++.+++.+.+++++||+.+++.+++.+    ...+.+++.+.|+.++.+++.|++|..+||.
T Consensus       829 ~~~~~~~ts~i~~~a~~ll~~pE~~~i~aa~qF~t~~~~~~~s~~----~~tv~~~V~~~G~~Li~~im~~vgg~~~RS~  904 (982)
T KOG2022|consen  829 EPSMLAFTSLILICAFILLNSPEPTTIRAASQFLTALATYATSHD----LVTVTSVVAEIGPILIYAIMRGVGGEASRST  904 (982)
T ss_pred             ccchHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHhhcccch----hHHHHHHHHhcchHHHHHHHHHhcCcCccch
Confidence            87 456777775 99999999999999999999999988765432    2468899999999999999999999999999


Q ss_pred             cccHHHHHHHHHHHhhHHHHHHHHHHH--hhCCCCCCCHHHHHHHHHHHHHHhcCCCchhhhHHHHHHHHHHHhh
Q 002041          882 LETVTYALLALTRAYGVRSLEWAKESV--SLIPLTALAEVERSRFLQALSEAASGVDVNAAMAPVEELSDVCRRN  954 (976)
Q Consensus       882 ~~~~~~~L~~l~~~~~~~~~~wl~~~l--~~~p~~~~~~~~k~~f~~~l~~~~~~~~~~~~~~~l~~F~~~cr~~  954 (976)
                      ++.++|+|+++.++|+.+++.|+.+++  +++|+.+++++.|++|++.|+++|  .++|.+++.+.+|+..|||.
T Consensus       905 ld~~aDIL~al~~k~~se~r~wl~~~lq~~gfPs~~~s~e~k~rf~t~llrer--~n~R~~k~~il~~~L~~~~l  977 (982)
T KOG2022|consen  905 LDALADILLALNAKFFSETRTWLKAVLQIPGFPSAGVSNEIKSRFVTSLLRER--GNKRNFKQQILEFNLACTGL  977 (982)
T ss_pred             hHHHHHHHHHHHHhhhHHHHHHHHHHhcCCCCCcccCChHHHHHHHHHHHHHH--hcHHHHHHHHHHHHHHhcCC
Confidence            999999999999999999999999999  589999999999999999999997  67899999999999999986

>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion] Back     alignment and domain information
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2020 consensus Nuclear transport receptor CRM1/MSN5 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1410 consensus Nuclear transport receptor RanBP16 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure] Back     alignment and domain information
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane Back     alignment and domain information
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES) Back     alignment and domain information
>COG5657 CSE1 CAS/CSE protein involved in chromosome segregation [Cell division and chromosome partitioning] Back     alignment and domain information
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only] Back     alignment and domain information
>PF03810 IBN_N: Importin-beta N-terminal domain; InterPro: IPR001494 Karyopherins are a group of proteins involved in transporting molecules through the pores of the nuclear envelope Back     alignment and domain information
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane Back     alignment and domain information
>KOG0915 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG4541 consensus Nuclear transport receptor exportin 4 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification] Back     alignment and domain information
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only] Back     alignment and domain information
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous [] Back     alignment and domain information
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>KOG0212 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG0915 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PTZ00429 beta-adaptin; Provisional Back     alignment and domain information
>KOG1248 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells Back     alignment and domain information
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region Back     alignment and domain information
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PLN03200 cellulose synthase-interactive protein; Provisional Back     alignment and domain information
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II Back     alignment and domain information
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1 Back     alignment and domain information
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PTZ00429 beta-adaptin; Provisional Back     alignment and domain information
>KOG0212 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region Back     alignment and domain information
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells Back     alignment and domain information
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins Back     alignment and domain information
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES) Back     alignment and domain information
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [] Back     alignment and domain information
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification] Back     alignment and domain information
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion] Back     alignment and domain information
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B Back     alignment and domain information
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure] Back     alignment and domain information
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] Back     alignment and domain information
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins Back     alignment and domain information
>cd00020 ARM Armadillo/beta-catenin-like repeats Back     alignment and domain information
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous [] Back     alignment and domain information
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B Back     alignment and domain information
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] Back     alignment and domain information
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 [] Back     alignment and domain information
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PRK09687 putative lyase; Provisional Back     alignment and domain information
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF08167 RIX1: rRNA processing/ribosome biogenesis Back     alignment and domain information
>PLN03200 cellulose synthase-interactive protein; Provisional Back     alignment and domain information
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 Back     alignment and domain information
>PRK09687 putative lyase; Provisional Back     alignment and domain information
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms Back     alignment and domain information
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter Back     alignment and domain information
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms] Back     alignment and domain information
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query976
2x1g_F971 Crystal Structure Of Importin13 - Mago-Y14 Complex 1e-25
2xwu_B963 Crystal Structure Of Importin 13 - Ubc9 Complex Len 3e-24
2x19_B963 Crystal Structure Of Importin13 - Rangtp Complex Le 3e-19
>pdb|2X1G|F Chain F, Crystal Structure Of Importin13 - Mago-Y14 Complex Length = 971 Back     alignment and structure 
Iteration: 1

 Score =  115 bits (289), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 199/966 (20%), Positives = 378/966 (39%), Gaps = 127/966 (13%)
Query: 29  WLQDFQHTIDAWQVADNLLHDATSNLETLIFCSQTLRSKVQRDVEELPSEAVRGLQDSLN 88
           WL D + +  AWQ +  L+    S  E   F + TL SK+ +   E+P E    L+  + 
Sbjct: 30  WLTDAEASPQAWQFSWQLMQLGKSQ-EVQFFGAITLHSKLMKHWHEVPPENREELKQKIL 88
Query: 89  TLLKKFHKGPPKVRTQISIAVAALAVHISAEDWGGG--GIVNWLRDEMNSHPEFVPG--- 143
             + +F  GP  V  ++ I++ A  VH+  E W G    ++N  +++    P        
Sbjct: 89  ESIVRFAGGPKIVLNRLCISLGAYIVHMLGE-WPGAIEEVINTFQNQ--RMPNVSADVQL 145
Query: 144 --FLELLTVLPEE-----------VFNYKIAARPE-------------RRRQFEKELTSQ 177
              LE+LT +PEE           V   +IA R +               R ++ E  S 
Sbjct: 146 WIMLEVLTAIPEEAQVIHTSVKRVVLRAEIAKRVQLVIHTVERYLKLQMNRVWDAEAYSN 205
Query: 178 MEVALSTL-TACLHINELKEQVLEAFASWLRLKHRIPGSVLASHPLVLTALSSLHSEILS 236
           M  A+  + T   +I    E  +   A  L + H+     + +    +TA  +  +E   
Sbjct: 206 MNRAVKCVGTWIKNIGYTIEGCVTITAVLLEVVHKCYWPCIHAGDGCMTADENELAESCL 265
Query: 237 EASVNVISELIHYSAAGSSGGATVNMPLIQVIVPQIMSLKAHLTDSSKDEEDVKA-IARL 295
           +  VN+I   I          A V   LI++ +  +  +         D ED+   I  L
Sbjct: 266 KTMVNII---IQPDCHNYPKTAFV---LIKMFLDSLSEITKTEWKRENDNEDIIVHIYML 319
Query: 296 FADMGDSYVELIATG----SDESMLIVHALLEVASH---------PEYDIASMTFNFWHS 342
           F    + +  L+ +G      E  ++VH +++   H          E   ++M   FW+ 
Sbjct: 320 FVSSVERHSTLLLSGITSADPELSILVHRIVQEILHCTDKPGIYPVEESCSTMALAFWYM 379
Query: 343 LQVILTKRDSYISFGNEASAEAERSRRLQVFRSAYESLVSLVSFRVQYPQDYQ--DLSLE 400
           LQ      D   +  N+     ++ +  +  +  Y  L  ++  + + P +      S +
Sbjct: 380 LQ------DEVFAMSNDE----QKHKCWEYIKPLYAHLTRILVRKSEQPDEKSLAKWSSD 429
Query: 401 DLKEFKHTRYDLACCSSSTLTESVMLIAVADVLIDAASVLGGDATLKILYIKFVEGVACC 460
           DL+ F+  R D                 ++D  +    VL  D  L+IL     E +A  
Sbjct: 430 DLECFRCYRQD-----------------ISDTFMYCYDVLN-DYILEILAAMLDEAIADL 471
Query: 461 GNKHNEWRPAEAALFCIRAISTYVSVVEAEVMPQVM---AXXXXXXXXXXXXXTVCLTIG 517
                 W   EA ++  ++++ +    E   +P++M   A             T   T+G
Sbjct: 472 QRHPTHWTKLEACIYSFQSVAEHFGGEEKRQIPRLMRVLAEIPYEKLNVKLLGTALETMG 531
Query: 518 AYSKWFDAASSDPSILASVLSILTSGMSTSEDTXXXXXXXFRHICDDCRKKLCGYLDGLY 577
           +Y  W      +P+ +   +++L  G+++S           + +C DC+ +L  Y D L 
Sbjct: 532 SYCNWL---MENPAYIPPAINLLVRGLNSS--MSAQATLGLKELCRDCQLQLKPYADPLL 586
Query: 578 NVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQ 637
           N    ++N  G +K S  DS+ L+ ++  +++ L   +  K L+++  P    LQ I   
Sbjct: 587 NACHASLNT-GRMKNS--DSVRLMFSIGKLMSLLRPEEIPKYLDIIVSPCFEELQAICQA 643
Query: 638 GPEILQKKHP--RDLTV-HIDRFAYIFRYVN---------HP--EAVADAIQRLWPIFKA 683
                  K P  R  T+  ++  + +F  +N          P  + V   +QR  PIFK 
Sbjct: 644 D-----SKTPAARIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVLLVMQRTMPIFKR 698
Query: 684 IFDIRAWDMRTMESLCRACKYAVRTSKRFMGITIGAILEEIQGLYQQHQQPCFLYLSSEV 743
           I ++   ++  +E+ C A K+A+   +      +  +   I   +Q       L +S   
Sbjct: 699 IAEMWVEEIDVLEAACSAMKHAITNLRSSFQPMLQDLCLFIVASFQTRCCAPTLEISKTA 758
Query: 744 IKIFGSDPSCASYLHNLIEALFKRTTCLLTSIEE--FTSRPDVADDCFLLASRCIRYCPQ 801
           I +F  D  C   +  L+    + +  L  S  E  F++  D  +  F   ++ I+  PQ
Sbjct: 759 IVMFFKDEGCKPLMQQLLREFIQHSFKLFESTPEQNFSNISDTMETFFGCLTQIIKKIPQ 818
Query: 802 LFIPSSV-FPSLVDCSMIGITVQHREASNSILTFLSDIFDLAKSCKGEEFLSVRDSVIIP 860
           +    ++ +  LV  +  G+T+    A  + + FL+     +++       +    V++ 
Sbjct: 819 VLEDKTLAYDRLVFYAQRGMTLPESGAIRNSIQFLTHFVMQSRN------HAHVTEVVLA 872
Query: 861 RGASITRILIASLTGALPSSRLETVTYALLALTRAYGVRSLEWAKESVSL--IPLTALAE 918
            G       +  +    P S+++     LLA+ R Y      W K  +S    P   + +
Sbjct: 873 TGEQTLYTAMMCVGYLTPRSQVDKFADILLAMNRKYAAEMAVWMKSLMSTPNFPTQLITD 932
Query: 919 VERSRF 924
            +++R+
Sbjct: 933 ADKTRY 938
>pdb|2XWU|B Chain B, Crystal Structure Of Importin 13 - Ubc9 Complex Length = 963 Back     alignment and structure
>pdb|2X19|B Chain B, Crystal Structure Of Importin13 - Rangtp Complex Length = 963 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query976
2x19_B963 Importin-13; nuclear transport, protein transport; 1e-137
2x1g_F971 Cadmus; transport protein, developmental protein, 1e-132
3gjx_A1073 Exportin-1; transport, cytoplasm, nucleus, RNA-bin 1e-95
3m1i_C1049 Exportin-1; heat repeat, GTP-binding, nucleotide-b 1e-81
3ibv_A980 Exportin-T; karyopherin, heat repeat, cytoplasm, n 9e-69
3a6p_A 1204 Exportin-5; exportin-5, RANGTP, nuclearexport, imp 4e-42
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-19
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-08
4fdd_A852 Transportin-1; heat repeats, karyopherin, nuclear 1e-18
2bpt_A861 Importin beta-1 subunit; nuclear transport, nucleo 7e-14
1wa5_C960 Importin alpha RE-exporter; nuclear transport/comp 1e-08
1qgr_A876 Protein (importin beta subunit); transport recepto 2e-08
1ibr_B462 P95, importin beta-1 subunit, nuclear factor; smal 3e-04
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B Length = 963 Back     alignment and structure
 Score =  434 bits (1116), Expect = e-137
 Identities = 190/987 (19%), Positives = 398/987 (40%), Gaps = 97/987 (9%)

Query: 5   NTVKEALNALYHHPDDAVRMQADRWLQDFQHTIDAWQVADNLLHDATSNLETLIFCSQTL 64
             V++AL+ LY+ P+   +  A +WL   Q +  AW  +  LL       E   F +  L
Sbjct: 24  ENVEKALHQLYYDPNIENKNLAQKWLMQAQVSPQAWHFSWQLLQP-DKVPEIQYFGASAL 82

Query: 65  RSKVQRDVEELPSEAVRGLQDSLNTLLKKFHKGPPKVRTQISIAVAALAVHISAEDWGG- 123
             K+ R   ++P++    L+  L T + +F  G   V T++ +A+A+LA+ +  + W   
Sbjct: 83  HIKISRYWSDIPTDQYESLKAQLFTQITRFASGSKIVLTRLCVALASLALSMMPDAWPCA 142

Query: 124 -GGIVNWLR--DEMNSHPEFVPGFLELLTVLPEEVFNYKI--AARPERRRQFEKELTSQM 178
              +V   +  D            LELLTVLPEE    ++    +   R     E  +  
Sbjct: 143 VADMVRLFQAEDSPVDGQGRCLALLELLTVLPEEFQTSRLPQYRKGLVRTSLAVECGAVF 202

Query: 179 EVALSTLTACLHINELKEQVLEAFASWLRLKHRIPGSVLASHPLVLTALSSLHSEILSEA 238
            +    L      + ++++VL+ F+SW++L+  +         L+  A ++L    L ++
Sbjct: 203 PLLEQLLQQPSSPSCVRQKVLKCFSSWVQLEVPLQ----DCEALIQAAFAALQDSELFDS 258

Query: 239 SVNVISELIHYSAAGSSGGATVNMPLIQVIVPQIMSLKAHLTDS--SKDEEDVKAIARLF 296
           SV  I   I      S   A   +  +  ++P ++ L+  L  +  + D E    I R+ 
Sbjct: 259 SVEAIVNAI------SQPDAQRYVNTLLKLIPLVLGLQEQLRQAVQNGDMETSHGICRIA 312

Query: 297 ADMGDSYVELIATGSDES---MLIVHALLEVASHPEY-----DIASMTFNFWHSLQVILT 348
             +G+++   +    +     + +V+ ++     P +       +S+T  FW++LQ  + 
Sbjct: 313 VALGENHSRALLDQVEHWQSFLALVNMIMFCTGIPGHYPVNETTSSLTLTFWYTLQDDIL 372

Query: 349 KRDSYISFGNEASAEAERSRRLQVFRSAYESLVSLVSFRVQYPQD--YQDLSLEDLKEFK 406
             ++            +++   QV+R  Y  LV ++  + Q+P D  Y   S ++ ++F+
Sbjct: 373 SFEAE-----------KQAVYQQVYRPVYFQLVDVLLHKAQFPSDEEYGFWSSDEKEQFR 421

Query: 407 HTRYDLACCSSSTLTESVMLIAVADVLIDAASVLGGDATLKILYIKFVEGVACCGNKHNE 466
             R D                 ++D L+    +LG +  L  LY K    +     +   
Sbjct: 422 IYRVD-----------------ISDTLMYVYEMLGAE-LLSNLYDKLGRLLTSS-EEPYS 462

Query: 467 WRPAEAALFCIRAISTYVSVVEAEVMPQVMALLPKLPQQ-PQLLQTVCLTIGAYSKWFDA 525
           W+  EA L+  ++I+  + V  ++V+P ++ L+P++     QL  TV  TIGA S+W   
Sbjct: 463 WQHTEALLYGFQSIAETIDVNYSDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWL-- 520

Query: 526 ASSDPSILASVLSILTSGMSTSEDTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVN 585
            +  P ++ SVL ++   +   E  + ++    + IC +C+  L  Y   +  V +  + 
Sbjct: 521 -ADHPVMINSVLPLVLHALGNPEL-SVSSVSTLKKICRECKYDLPPYAANIVAVSQDVLM 578

Query: 586 GEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKK 645
            +          + L++AL  +++ L   +  K L  L  P +  L+++  + P    K 
Sbjct: 579 KQ---IHKTSQCMWLMQALGFLLSALQVEEILKNLHSLISPYIQQLEKLAEEIPNPSNKL 635

Query: 646 HPRDLTVHIDRFAYIFRYVNH-----------------PEAVADAIQRLWPIFKAIFDIR 688
               +   +          +H                 P  V   +Q+++ + + +    
Sbjct: 636 AIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVVVLQQVFQLIQKVLSKW 695

Query: 689 AWDMRTMESLCRACKYAVRTSKRFMGITIGAILEEIQGLYQQHQQPCFLYLSSEVIKIFG 748
             D + +E++C   + +V+T        +  + E +  +Y    Q   L L+ +++ IF 
Sbjct: 696 LNDAQVVEAVCAIFEKSVKTLLDDFAPMVPQLCEMLGRMYSTIPQASALDLTRQLVHIFA 755

Query: 749 SDPSCASYLHNLIEALFKRTTCLLTSIEEFTSRPDVADDCFLLASRCIRYCPQLFIPSSV 808
            +P+    +  L   +   T  L    +     PD+ D    L ++ ++  P LF+   +
Sbjct: 756 HEPAHFPPIEALFLLVTSVTLTLFQ--QGPRDHPDIVDSFMQLLAQALKRKPDLFLCERL 813

Query: 809 -FPSLVDCSMIGITVQHREASNSILTFLSDIFDLAKSCKGEEFLSVRDSVIIPRGASITR 867
              ++  C+++ +         +   F +++            +     V+   G  +  
Sbjct: 814 DVKAVFQCAVLALKFPEAPTVKASCGFFTELLPRCGE------VESVGKVVQEDGRMLLI 867

Query: 868 ILIASLTGALPSSRLETVTYALLALTRAYGVRSLEWAKESVSL--IPLTALAEVERSRFL 925
            ++ ++ G    S ++     L AL +        W KE++     P   L+  ++  F 
Sbjct: 868 AVLEAIGGQASRSLMDCFADILFALNKHCFSLLSMWIKEALQPPGFPSARLSPEQKDTFS 927

Query: 926 QALSEAASGVDVNAAMAPVEELSDVCR 952
           Q +       +       V+E + +CR
Sbjct: 928 QQILRERV--NKRRVKEMVKEFTLLCR 952
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} Length = 971 Back     alignment and structure
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A Length = 1073 Back     alignment and structure
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B Length = 1049 Back     alignment and structure
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T* Length = 980 Back     alignment and structure
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens} Length = 1204 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852 Back     alignment and structure
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Length = 861 Back     alignment and structure
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A Length = 960 Back     alignment and structure
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Length = 876 Back     alignment and structure
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Length = 462 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query976
2x1g_F971 Cadmus; transport protein, developmental protein, 100.0
3ibv_A980 Exportin-T; karyopherin, heat repeat, cytoplasm, n 100.0
2x19_B963 Importin-13; nuclear transport, protein transport; 100.0
4hat_C1023 Exportin-1; heat repeat, nuclear export, RAN-ranbp 100.0
3gjx_A1073 Exportin-1; transport, cytoplasm, nucleus, RNA-bin 100.0
3m1i_C1049 Exportin-1; heat repeat, GTP-binding, nucleotide-b 100.0
3a6p_A1204 Exportin-5; exportin-5, RANGTP, nuclearexport, imp 100.0
1wa5_C960 Importin alpha RE-exporter; nuclear transport/comp 100.0
4fdd_A852 Transportin-1; heat repeats, karyopherin, nuclear 100.0
2bpt_A861 Importin beta-1 subunit; nuclear transport, nucleo 100.0
1qgr_A876 Protein (importin beta subunit); transport recepto 100.0
1ibr_B462 P95, importin beta-1 subunit, nuclear factor; smal 99.91
1u6g_C 1230 TIP120 protein, CAND1; cullin repeat, heat repeat, 99.77
4fdd_A852 Transportin-1; heat repeats, karyopherin, nuclear 99.75
1w9c_A321 CRM1 protein, exportin 1; nuclear protein, nuclear 99.53
2bpt_A861 Importin beta-1 subunit; nuclear transport, nucleo 99.52
1qgr_A876 Protein (importin beta subunit); transport recepto 99.49
1u6g_C 1230 TIP120 protein, CAND1; cullin repeat, heat repeat, 99.25
1b3u_A588 Protein (protein phosphatase PP2A); scaffold prote 99.21
1b3u_A588 Protein (protein phosphatase PP2A); scaffold prote 99.12
2vgl_B591 AP-2 complex subunit beta-1; cytoplasmic vesicle, 98.3
1ibr_B462 P95, importin beta-1 subunit, nuclear factor; smal 98.17
1wa5_C960 Importin alpha RE-exporter; nuclear transport/comp 98.03
1w63_A618 Adapter-related protein complex 1 gamma 1 subunit; 97.98
2qk1_A249 Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h 97.91
2qk2_A242 LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 97.76
2x1g_F971 Cadmus; transport protein, developmental protein, 97.73
1w63_A618 Adapter-related protein complex 1 gamma 1 subunit; 97.44
2qk1_A249 Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h 97.35
2qk2_A242 LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 97.32
2vgl_A621 Adaptor protein complex AP-2, alpha 2 subunit; cyt 97.18
2x19_B963 Importin-13; nuclear transport, protein transport; 97.1
4hat_C1023 Exportin-1; heat repeat, nuclear export, RAN-ranbp 97.06
2vgl_B591 AP-2 complex subunit beta-1; cytoplasmic vesicle, 97.01
1wa5_B530 Importin alpha subunit; nuclear transport/complex, 96.99
4b8j_A528 Importin subunit alpha-1A; transport protein, nucl 96.97
2jdq_A450 Importin alpha-1 subunit; transport, PB2 subunit, 96.89
1wa5_B530 Importin alpha subunit; nuclear transport/complex, 96.83
4b8j_A528 Importin subunit alpha-1A; transport protein, nucl 96.78
3ibv_A980 Exportin-T; karyopherin, heat repeat, cytoplasm, n 96.7
3m1i_C1049 Exportin-1; heat repeat, GTP-binding, nucleotide-b 96.51
3gjx_A1073 Exportin-1; transport, cytoplasm, nucleus, RNA-bin 96.46
2vgl_A621 Adaptor protein complex AP-2, alpha 2 subunit; cyt 96.39
2jdq_A450 Importin alpha-1 subunit; transport, PB2 subunit, 95.97
2z6g_A780 B-catenin; FULL-length, beta-catenin, cell adhesio 95.59
2z6g_A780 B-catenin; FULL-length, beta-catenin, cell adhesio 95.58
3ul1_B510 Importin subunit alpha-2; arm repeat, armadillo re 95.06
3tpo_A529 Importin subunit alpha-2; nuclear import, protein 94.44
3u0r_A507 Apoptosis inhibitor 5; heat repeat, armadillo repe 93.76
3tpo_A529 Importin subunit alpha-2; nuclear import, protein 93.5
3ul1_B510 Importin subunit alpha-2; arm repeat, armadillo re 93.39
2iw3_A 986 Elongation factor 3A; acetylation, ATP-binding, pr 93.16
4hxt_A252 De novo protein OR329; structural genomics, PSI-bi 93.06
1xqr_A296 HSPBP1 protein; armadillo repeat, superhelical twi 92.42
2of3_A266 ZYG-9; multifunctional macromolecule, kinetochore, 92.28
2iw3_A 986 Elongation factor 3A; acetylation, ATP-binding, pr 92.0
4hxt_A252 De novo protein OR329; structural genomics, PSI-bi 90.91
4db6_A210 Armadillo repeat protein; solenoid repeat, armadil 90.56
1oyz_A280 Hypothetical protein YIBA; structural genomics, PS 90.56
4db8_A252 Armadillo-repeat protein; solenoid repeat, de novo 90.11
2z6h_A644 Catenin beta-1, beta-catenin; C-terminal domain, a 89.99
1w9c_A321 CRM1 protein, exportin 1; nuclear protein, nuclear 89.97
1xqr_A296 HSPBP1 protein; armadillo repeat, superhelical twi 88.38
3ltj_A201 Alpharep-4; protein engineering, heat-like repeat, 86.21
2z6h_A644 Catenin beta-1, beta-catenin; C-terminal domain, a 86.11
4db6_A210 Armadillo repeat protein; solenoid repeat, armadil 85.6
4db8_A252 Armadillo-repeat protein; solenoid repeat, de novo 85.27
1xm9_A457 Plakophilin 1; armadillo repeat, cell adhesion; 2. 82.74
3a6p_A 1204 Exportin-5; exportin-5, RANGTP, nuclearexport, imp 82.58
3now_A810 UNC-45 protein, SD10334P; armadillo repeat, HSP90, 81.51
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} Back     alignment and structure
Probab=100.00  E-value=2.2e-91  Score=889.86  Aligned_cols=887  Identities=20%  Similarity=0.349  Sum_probs=733.7

Q ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhHHHHHHHHhhcCCCchHHHHHHHHHHHHHhhcCCCCCChhhHHHH
Q 002041            4 QNTVKEALNALYHHPDDAVRMQADRWLQDFQHTIDAWQVADNLLHDATSNLETLIFCSQTLRSKVQRDVEELPSEAVRGL   83 (976)
Q Consensus         4 ~~~v~~al~~ly~~~d~~~r~~A~~~L~~~q~s~~aw~~~~~lL~~~~~~~~v~ffaa~~L~~ki~~~w~~l~~~~~~~l   83 (976)
                      +++|+++++.+| ++|++.|++|++||++||++|++|.+|.+||.. +.+.++|||||++|+++|+++|..++++++..+
T Consensus         6 ~~~l~~~l~~~~-~~d~~~r~~A~~~L~~~~~~p~~w~~~~~lL~~-~~~~~vr~~aa~~L~~~i~~~w~~l~~~~~~~i   83 (971)
T 2x1g_F            6 IARLEEAVVSFY-RSNSQNQAITHEWLTDAEASPQAWQFSWQLMQL-GKSQEVQFFGAITLHSKLMKHWHEVPPENREEL   83 (971)
T ss_dssp             -----CTHHHHH-TSTTTC----CHHHHHTTTSTHHHHHHHHHTCT-TSCHHHHHHHHHHHHHHHHHCGGGCCGGGHHHH
T ss_pred             HHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHcCHHHHHHHHHHHhc-CCcHHHHHHHHHHHHHHHHccHhhCCHHHHHHH
Confidence            567999999976 468889999999999999999999999999976 678899999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhccccccCCccchHHHHHhcCC-------CCCcHHHHHHHHhhcccccc
Q 002041           84 QDSLNTLLKKFHKGPPKVRTQISIAVAALAVHISAEDWGGGGIVNWLRDEMNS-------HPEFVPGFLELLTVLPEEVF  156 (976)
Q Consensus        84 r~~Ll~~l~~~~~~~~~v~~kL~~~La~l~~~~~~~~W~~~~~~~~l~~~l~~-------~~~~~~~~L~~L~~l~EE~~  156 (976)
                      |+.+++++.+...+++.||+|+|.+++.++.+.++ .||+  +++++.+.+++       ++.....++.+|+.++||+.
T Consensus        84 r~~ll~~l~~~~~~~~~vr~kl~~~la~i~~~~~p-~Wp~--~l~~l~~~~~~~~~~~~~~~~~~~~~l~iL~~l~EEi~  160 (971)
T 2x1g_F           84 KQKILESIVRFAGGPKIVLNRLCISLGAYIVHMLG-EWPG--AIEEVINTFQNQRMPNVSADVQLWIMLEVLTAIPEEAQ  160 (971)
T ss_dssp             HHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTC-C--------HHHHHHHHTC----CHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHccc-cccH--HHHHHHHHHhccccccCCCHHHHHHHHHHHHHhHHHHh
Confidence            99999999987667899999999999999999998 9999  99999988865       23467899999999999987


Q ss_pred             cccccCChhHHHHHHHHHHHhHHHHHHHHHHhhhhh----------HHHHHHHHHHHHhhhccCCCCCcccccchhHHHH
Q 002041          157 NYKIAARPERRRQFEKELTSQMEVALSTLTACLHIN----------ELKEQVLEAFASWLRLKHRIPGSVLASHPLVLTA  226 (976)
Q Consensus       157 ~~~~~~~~~~r~~l~~~l~~~~~~vl~~l~~~l~~~----------~~~~~~l~~~~sWi~~~~~i~~~~l~~~~l~~~~  226 (976)
                      +.+   +..||..+++.+..+++.|++++..+++..          ++...+++|+.+|+.++ .+|.+  ...++++.+
T Consensus       161 ~~~---~~~~r~~~~~~l~~~~~~vl~ll~~~l~~~~~~~~~~~~~~~~~~al~~l~~~~~~~-~ip~~--~~~~ll~~l  234 (971)
T 2x1g_F          161 VIH---TSVKRVVLRAEIAKRVQLVIHTVERYLKLQMNRVWDAEAYSNMNRAVKCVGTWIKNI-GYTIE--GCVTITAVL  234 (971)
T ss_dssp             HCC---CSSCHHHHHHHHHTTHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHS-CCCGG--GHHHHHHHH
T ss_pred             ccC---cHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCccchhHHHHHHHHHHHHHhhC-CcCcc--ccccHHHHH
Confidence            544   456788888999999999999998887642          57899999999999952 25655  557889988


Q ss_pred             HhcC------------------CCcchHHHHHHHHHHHhhhhccCCCCCccCchhHHHHHHHHHHhhHHHhhh--ccCC-
Q 002041          227 LSSL------------------HSEILSEASVNVISELIHYSAAGSSGGATVNMPLIQVIVPQIMSLKAHLTD--SSKD-  285 (976)
Q Consensus       227 ~~~L------------------~~~~~~~~a~~~l~~ii~~~~~~~~~~~~~~~~~i~~l~~~v~~l~~~~~~--~~~d-  285 (976)
                      +. |                  .+++++++|++|+.++++....      .++.+++..++|.+.++...+..  .++| 
T Consensus       235 ~~-L~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~------~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~  307 (971)
T 2x1g_F          235 LE-VVHKCYWPCIHAGDGCMTADENELAESCLKTMVNIIIQPDC------HNYPKTAFVLIKMFLDSLSEITKTEWKREN  307 (971)
T ss_dssp             HH-HHHHHHSSSCC---CCCCHHHHHHHHHHHHHHHHHHHCSGG------GGCHHHHHHHHHHHHHHHHHHHHHHSSSSC
T ss_pred             Hh-hhhhhccccccccccccCcCCcHHHHHHHHHHHHHHcCccc------cccHHHHHHHHHHHHHhHHHHHHHHhcccc
Confidence            87 6                  4678999999999999986431      24677888888888776655432  3444 


Q ss_pred             --HHHHHHHHHHHHHHhhHHHHHHh----c----CCchhHHHHHHHHhhccC----C-CcchhhhhHHHHHHHHHHhccc
Q 002041          286 --EEDVKAIARLFADMGDSYVELIA----T----GSDESMLIVHALLEVASH----P-EYDIASMTFNFWHSLQVILTKR  350 (976)
Q Consensus       286 --~e~~~~~~~l~~~~~~~~~~~l~----~----~~~~~~~ll~~lL~~~~~----~-~~~vs~~~l~fW~~l~~~l~~~  350 (976)
                        ++..+.+|++++.+|+.+...+.    +    .++.+..+++.|+.++.+    + +++++..+++||+.+++.....
T Consensus       308 ~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~  387 (971)
T 2x1g_F          308 DNEDIIVHIYMLFVSSVERHSTLLLSGITSADPELSILVHRIVQEILHCTDKPGIYPVEESCSTMALAFWYMLQDEVFAM  387 (971)
T ss_dssp             SCSHHHHHHHHHHHHHHHHTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHCSSCTTTTCTTHHHHHHHHHHHHHHHHC-
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHcCCCCCCcchhhhHHHHHHHHHHHHHHHhc
Confidence              37888999999999999888776    3    224577889999998876    3 7899999999999999854321


Q ss_pred             ccccccCcccchHHHHHHHHHhhHHHHHHHHHHHHhhccCCCC--CCCCChhhhHHhHhhhhcccccCCccchhhhhhhh
Q 002041          351 DSYISFGNEASAEAERSRRLQVFRSAYESLVSLVSFRVQYPQD--YQDLSLEDLKEFKHTRYDLACCSSSTLTESVMLIA  428 (976)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~l~~k~~~p~d--~~~~~~d~~~~f~~~R~~~~~~~~~~~~~~~~~~~  428 (976)
                      .      .+    .+....+..++|++.+++++++.|+.||+|  +++||.+|+++|.+||+.                 
T Consensus       388 ~------~~----~~~~~~~~~~~~~~~~ll~~l~~~~~~p~~~~~~~~d~~e~~~f~~~R~~-----------------  440 (971)
T 2x1g_F          388 S------ND----EQKHKCWEYIKPLYAHLTRILVRKSEQPDEKSLAKWSSDDLECFRCYRQD-----------------  440 (971)
T ss_dssp             ----------------CHHHHHHHHHHHHHHHHHHHHTSCCCTTTTSCSCHHHHHHHHHHHHH-----------------
T ss_pred             c------cc----cchHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccCHhHHHHHHHHHHH-----------------
Confidence            0      00    001234567899999999999999999975  457888888999999999                 


Q ss_pred             hhhHHHHHHhhcChhHHHHHHHHHHHHhHhhcCCCCCCcchhhHHHHHHHHhhcccCcccccchHHHhhhccCCC-C--c
Q 002041          429 VADVLIDAASVLGGDATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVVEAEVMPQVMALLPKLP-Q--Q  505 (976)
Q Consensus       429 ~~d~l~~~~~~l~~~~~l~~l~~~l~~~~~~~~~~~~~w~~~Ea~L~~l~~i~e~~~~~~~~~l~~l~~~l~~~~-~--~  505 (976)
                      ++|++.+++.++| +.+++.+.+.+.+.+.+....+.+|+.+||++|+++++++++..+..+.++++++.+++++ .  |
T Consensus       441 ~~~~l~~~~~~~~-~~~l~~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~~~~l~~l~~~l~~l~~~d~~  519 (971)
T 2x1g_F          441 ISDTFMYCYDVLN-DYILEILAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEEKRQIPRLMRVLAEIPYEKLN  519 (971)
T ss_dssp             HHHHHHHHHTTCT-THHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC------CHHHHHHHHHHHSCTTTSC
T ss_pred             HHHHHHHHHHHHh-HHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHhcCccccC
Confidence            9999999999999 6788888888877664211113789999999999999999998877788999999777666 3  8


Q ss_pred             HHHHHHHHHHHHhcHHHHhhCCCCcchHHHHHHHHHcccCCChHHHHHHHHHHHHHHHHhhhhhhcCHHHHHHHHHHHhh
Q 002041          506 PQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSEDTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVN  585 (976)
Q Consensus       506 ~~v~~t~~~~ig~y~~~~~~~p~~~~~l~~~l~~l~~~l~~~~~v~~~A~~al~~l~~~~~~~L~~~l~~ll~~~~~~~~  585 (976)
                      |.||.++|+++|+|++|+..||+   ++++++++++++++ +. |+.+||.||.+||++|+..|.||++++++.+.++++
T Consensus       520 ~~vr~~a~~~l~~~~~~l~~~~~---~l~~vl~~l~~~l~-~~-v~~~A~~al~~l~~~~~~~l~p~~~~ll~~l~~~l~  594 (971)
T 2x1g_F          520 VKLLGTALETMGSYCNWLMENPA---YIPPAINLLVRGLN-SS-MSAQATLGLKELCRDCQLQLKPYADPLLNACHASLN  594 (971)
T ss_dssp             HHHHHHHHHHHHHTHHHHC-------CHHHHHHHHHHHHH-SS-CHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhcCHH---HHHHHHHHHHHHhC-hH-HHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHc
Confidence            99999999999999999999987   89999999999995 66 999999999999999999999999999999999987


Q ss_pred             ccCCCCCCHHhHHHHHHHHHHHHhcCChHHHHHHHHHhhhHHHHHHHHHHhcCCCcccccCcchhhhHHHHHHHHhhhcC
Q 002041          586 GEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVN  665 (976)
Q Consensus       586 ~~~~~~l~~~~~~~l~eai~~vi~~~p~~~~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~  665 (976)
                      .+   .++.+++..+++++|.++.++|+++..+++..++.|+++.++++.++...+  +.........+++++++++.++
T Consensus       595 ~~---~~~~~~~~~~~~ai~~i~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~--~~~~~~~~~~l~~L~~~~~~l~  669 (971)
T 2x1g_F          595 TG---RMKNSDSVRLMFSIGKLMSLLRPEEIPKYLDIIVSPCFEELQAICQADSKT--PAARIRTIFRLNMISTLFSSLN  669 (971)
T ss_dssp             ST---TSCHHHHHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHTC---C--HHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CC---CCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCC--hhhHHHHHHHHHHHHHHHhhcC
Confidence            53   477899999999999999999877888999999999999999987654311  1112345678899999998875


Q ss_pred             C-----------cccHHHHHHHHhHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhcCCc
Q 002041          666 H-----------PEAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRACKYAVRTSKRFMGITIGAILEEIQGLYQQHQQP  734 (976)
Q Consensus       666 ~-----------~~~~~~~~~~~~~~l~~ll~~~~~~~~v~e~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~  734 (976)
                      .           ++++.++.+++||++..+++.+..+.+++|++|.+++++++++|..+.|++|++++.+...|+.++++
T Consensus       670 ~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~~~~~~~p~l~~~~~~l~~~~~~~~~~  749 (971)
T 2x1g_F          670 TDVDEQATDQPIVQPVLLVMQRTMPIFKRIAEMWVEEIDVLEAACSAMKHAITNLRSSFQPMLQDLCLFIVASFQTRCCA  749 (971)
T ss_dssp             C-------------CCHHHHHTTHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHC--CTHHHHHHHHHHHHCC--CCH
T ss_pred             CCcCcccccccCCCchHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhhccccHHHHHHHHHHHHhcCCch
Confidence            3           46788899999999999999988889999999999999999999999999999999999999999999


Q ss_pred             cHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHhhhcCc--ccCCCCCccHHHHHHHHHHHHhhCCCcccCcCC-hHH
Q 002041          735 CFLYLSSEVIKIFGSDPSCASYLHNLIEALFKRTTCLLTSI--EEFTSRPDVADDCFLLASRCIRYCPQLFIPSSV-FPS  811 (976)
Q Consensus       735 ~~L~l~~~li~~~~~~~~~~~~l~~~~~~l~~~~~~~l~~~--~~~~~~pD~~~~~f~l~~~~~~~~p~~~~~~~~-l~~  811 (976)
                      |++++++.++..||.++.+.+.+.+++..++.+++.++.+.  +.++++||++++||+|+.++++++|..+++++. +..
T Consensus       750 ~~l~l~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~pd~~~~~f~ll~~~l~~~p~~~~~s~~~l~~  829 (971)
T 2x1g_F          750 PTLEISKTAIVMFFKDEGCKPLMQQLLREFIQHSFKLFESTPEQNFSNISDTMETFFGCLTQIIKKIPQVLEDKTLAYDR  829 (971)
T ss_dssp             HHHHHHHHHHTTCCC-----HHHHHHHHHHHHHHHHHHTSCTTTHHHHTHHHHHHHHHHHHHHHHSSGGGGGCTTSCHHH
T ss_pred             HHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHhcccccCCccCchHHHHHHHHHHHHHHhCcHHHcCCcccHHH
Confidence            99999999999999987788999999999999999888753  356789999999999999999999999999898 999


Q ss_pred             HHHHHHHhcccCCchhHHHHHHHHHHhhcccCCCCchhhHHHHHHHHhhchHHHHHHHHHHcccCCCCCCcccHHHHHHH
Q 002041          812 LVDCSMIGITVQHREASNSILTFLSDIFDLAKSCKGEEFLSVRDSVIIPRGASITRILIASLTGALPSSRLETVTYALLA  891 (976)
Q Consensus       812 ~~~~~~~~l~~~~~~~~~~~~~fl~~l~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~ll~~l~~~~~~~~~~~~~~~L~~  891 (976)
                      ++++++.+++.+|+++.+++++||..++++..  .    .+.+++++.++|+.|+..++.+++|..||+.+++++++|++
T Consensus       830 i~~~~~~~l~~~~~~~~~s~~~fl~~~i~~~~--~----~~~~~~~~~~~g~~l~~~l~~~~~~~~~~s~~~~~a~~l~~  903 (971)
T 2x1g_F          830 LVFYAQRGMTLPESGAIRNSIQFLTHFVMQSR--N----HAHVTEVVLATGEQTLYTAMMCVGYLTPRSQVDKFADILLA  903 (971)
T ss_dssp             HHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHT--T----CHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGGGGGHHHHHH
T ss_pred             HHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCC--c----hHHHHHHHHHhHHHHHHHHHHHhcccCChhHHHHHHHHHHH
Confidence            99999999999999999999999999998732  1    23588999999999999999999999999999999999999


Q ss_pred             HHHHhhHHHHHHHHHHHh--hCCCCCCCHHHHHHHHHHHHHHhcCCCchhhhHHHHHHHHHHHhh
Q 002041          892 LTRAYGVRSLEWAKESVS--LIPLTALAEVERSRFLQALSEAASGVDVNAAMAPVEELSDVCRRN  954 (976)
Q Consensus       892 l~~~~~~~~~~wl~~~l~--~~p~~~~~~~~k~~f~~~l~~~~~~~~~~~~~~~l~~F~~~cr~~  954 (976)
                      +..++|+++++||.+++.  .+|+..+++++|++|+++|++.+  .++|+||+.+++||..|||.
T Consensus       904 l~~~~~~~~~~~l~~~l~~~~~p~~~~~~~~~~~f~~~l~~~~--~~~r~~~~~~~~f~~~~r~~  966 (971)
T 2x1g_F          904 MNRKYAAEMAVWMKSLMSTPNFPTQLITDADKTRYTALIIKEK--VNKRLLQQHLSEMAMKTRGL  966 (971)
T ss_dssp             HHHHHHHHHHHHHHHHHTSSSCSCSSSCHHHHHHHHHHHHHCS--SCHHHHHHHHHHHHHHHHC-
T ss_pred             HHHHCcHHHHHHHHHHhcccCCCCCcCCHHHHHHHHHHHHHHH--hChHhHHHHHHHHHHHHcCc
Confidence            999999999999999985  79998999999999999998754  36899999999999999986
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T* Back     alignment and structure
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B Back     alignment and structure
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B Back     alignment and structure
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A Back     alignment and structure
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B Back     alignment and structure
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens} Back     alignment and structure
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A Back     alignment and structure
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Back     alignment and structure
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Back     alignment and structure
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Back     alignment and structure
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Back     alignment and structure
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Back     alignment and structure
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Back     alignment and structure
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19 Back     alignment and structure
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Back     alignment and structure
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Back     alignment and structure
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Back     alignment and structure
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B Back     alignment and structure
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Back     alignment and structure
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A Back     alignment and structure
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Back     alignment and structure
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Back     alignment and structure
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Back     alignment and structure
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} Back     alignment and structure
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Back     alignment and structure
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Back     alignment and structure
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Back     alignment and structure
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A Back     alignment and structure
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B Back     alignment and structure
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B Back     alignment and structure
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B Back     alignment and structure
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Back     alignment and structure
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A Back     alignment and structure
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Back     alignment and structure
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Back     alignment and structure
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A Back     alignment and structure
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T* Back     alignment and structure
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B Back     alignment and structure
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A Back     alignment and structure
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A Back     alignment and structure
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Back     alignment and structure
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Back     alignment and structure
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Back     alignment and structure
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... Back     alignment and structure
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B Back     alignment and structure
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A Back     alignment and structure
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B Back     alignment and structure
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... Back     alignment and structure
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Back     alignment and structure
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} Back     alignment and structure
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Back     alignment and structure
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} Back     alignment and structure
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Back     alignment and structure
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} Back     alignment and structure
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Back     alignment and structure
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Back     alignment and structure
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Back     alignment and structure
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Back     alignment and structure
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19 Back     alignment and structure
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Back     alignment and structure
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Back     alignment and structure
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Back     alignment and structure
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Back     alignment and structure
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Back     alignment and structure
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Back     alignment and structure
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens} Back     alignment and structure
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 976
d1wa5c_959 a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Sacc 3e-18
d1qbkb_888 a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi 2e-15
d2bpta1861 a.118.1.1 (A:1-861) Importin beta {Baker's yeast ( 5e-14
d1w9ca_321 a.118.1.19 (A:) Exportin-1 (Xpo1, Crm1) {Human (Ho 3e-12
d1qgra_876 a.118.1.1 (A:) Importin beta {Human (Homo sapiens) 5e-06
d1ibrb_458 a.118.1.1 (B:) Importin beta {Human (Homo sapiens) 0.002
>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 959 Back     information, alignment and structure

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Exportin Cse1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 87.7 bits (216), Expect = 3e-18
 Identities = 97/886 (10%), Positives = 249/886 (28%), Gaps = 127/886 (14%)

Query: 11  LNALYHHPDDAVRMQADRWLQDFQHTIDAWQVADNLLHDATSNLETLIFCSQTLRSKVQR 70
              L      +    ++R L+  +          +++      L T +  +   ++ ++R
Sbjct: 8   AKFLAESVIASTAKTSERNLRQLETQDGFGLTLLHVIASTNLPLSTRLAGALFFKNFIKR 67

Query: 71  DVEE------LPSEAVRGLQDSLNTLLKKFHKGPPKVRTQISIAVAALAVHISAEDWGGG 124
              +      LP+  V  ++     ++      P  ++ QI  A++++A     + W   
Sbjct: 68  KWVDENGNHLLPANNVELIK---KEIVPLMISLPNNLQVQIGEAISSIADSDFPDRW--P 122

Query: 125 GIVNWLRDEMNSH-PEFVPGFLELLTVLPEEV-FNYKIAARPERRRQFEKELTSQMEVAL 182
            +++ L   +++       G L +   + +     ++        +      T+     L
Sbjct: 123 TLLSDLASRLSNDDMVTNKGVLTVAHSIFKRWRPLFRSDELFLEIKLVLDVFTAPFLNLL 182

Query: 183 STLTACLHINELKEQVLEAFASWLRLKHRIPGSVLASHPLVLTALSSLHSEILSEASVNV 242
            T+   +  NE  +  L      L +  ++               +        E ++ V
Sbjct: 183 KTVDEQITANENNKASLNILFDVLLVLIKL-----------YYDFNCQDIPEFFEDNIQV 231

Query: 243 ISELIHYSAAGSSGGATVNMPLIQVIVPQIMSLKAHLTDSSKDEEDVKAIARLFADMGDS 302
              + H                +    P ++        +S   +   +I  L       
Sbjct: 232 GMGIFHK--------------YLSYSNP-LLEDPDETEHASVLIKVKSSIQELVQLYTTR 276

Query: 303 YVELIATGSDESM-LIVHALLEVASHPEYD-IASMTFNFWHSLQVILTKRDSYISFGNEA 360
           Y ++     +E + +  + L  +++ P+YD + S + +F  ++                 
Sbjct: 277 YEDVFGPMINEFIQITWNLLTSISNQPKYDILVSKSLSFLTAV----------------- 319

Query: 361 SAEAERSRRLQVFRSAYESLVSLVSFRVQYPQDYQDLSLEDLKEFKHTRYDLACCSSSTL 420
                +   +    SA  ++   +       ++      ED       R      + +  
Sbjct: 320 -TRIPKYFEIFNNESAMNNITEQIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRR 378

Query: 421 TESVMLIAVADVLIDAASVLGGDATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAI 480
                  A  D L +         T   L            +    W+  +  ++   A+
Sbjct: 379 R------ACTDFLKELKEKNEVLVTNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTAL 432

Query: 481 -----STYVSVVEAEVMPQVMALLPKL---------PQQPQLLQTVCLTIGAYSKWFDAA 526
                 T   V     +  V+    K               L       I  +       
Sbjct: 433 AINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQL--- 489

Query: 527 SSDPSILASVLSILTSGMSTSEDT-AAAAALAFRHICDDC-----------RKKLCGYLD 574
               + L  ++ IL + + T E      AA+    I               ++ +    +
Sbjct: 490 --TKAQLIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTE 547

Query: 575 GLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEI 634
            L       +   GS      ++  L+ ++  V+          +++ L   ++    EI
Sbjct: 548 ILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSED-----SIQPLFPQLLAQFIEI 602

Query: 635 INQGPEILQKKHPRDLTVHIDRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDIRAWDMRT 694
           +    +      PR      +    I  Y    + +   +  + P F  +F     +   
Sbjct: 603 VTIMAKNPSN--PRFTHYTFESIGAILNYTQ-RQNLPLLVDSMMPTFLTVFSEDIQEF-- 657

Query: 695 MESLCRACKYAVRTSKRFMGITIGAILEEIQGLYQQHQQPCFLYLSSEVIKIFGSDPSCA 754
                    Y  +         I  ++E+   + +  +      L+  V ++ G+ P+  
Sbjct: 658 -------IPYVFQ--------IIAFVVEQSATIPESIKPLAQPLLAPNVWELKGNIPAVT 702

Query: 755 SYLHNLI---EALFKRTTCLLTSIEEFTSRPDVADDCFLLASRCIRYCPQLFIPSSVFPS 811
             L + I    ++F     +L   +   +        F L    +       +       
Sbjct: 703 RLLKSFIKTDSSIFPDLVPVLGIFQRLIASKAYEVHGFDLLEHIMLLIDMNRL-RPYIKQ 761

Query: 812 LVDCSMIGITVQHREASNSILTFLSDIFDLAKSCKGEEFLSVRDSV 857
           +    ++   +Q+ +    +         ++     +  +   D V
Sbjct: 762 IA--VLLLQRLQNSKTERYVKKLTVFFGLISNKLGSDFLIHFIDEV 805
>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888 Back     information, alignment and structure
>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 861 Back     information, alignment and structure
>d1w9ca_ a.118.1.19 (A:) Exportin-1 (Xpo1, Crm1) {Human (Homo sapiens) [TaxId: 9606]} Length = 321 Back     information, alignment and structure
>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 876 Back     information, alignment and structure
>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 458 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query976
d1qbkb_888 Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 100.0
d2bpta1861 Importin beta {Baker's yeast (Saccharomyces cerevi 99.97
d1qgra_876 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 99.96
d1wa5c_959 Exportin Cse1p {Baker's yeast (Saccharomyces cerev 99.96
d1ibrb_458 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 99.8
d1w9ca_321 Exportin-1 (Xpo1, Crm1) {Human (Homo sapiens) [Tax 99.55
d1u6gc_ 1207 Cullin-associated NEDD8-dissociated protein 1 (Tip 99.37
d2bpta1861 Importin beta {Baker's yeast (Saccharomyces cerevi 99.2
d1qbkb_888 Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 98.91
d1b3ua_588 Constant regulatory domain of protein phosphatase 98.89
d1qgra_876 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 98.78
d1b3ua_588 Constant regulatory domain of protein phosphatase 98.77
d1u6gc_1207 Cullin-associated NEDD8-dissociated protein 1 (Tip 98.62
d1ibrb_458 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 97.94
d2vglb_579 Adaptin beta subunit N-terminal fragment {Human (H 97.84
d1wa5c_959 Exportin Cse1p {Baker's yeast (Saccharomyces cerev 96.73
d2vglb_579 Adaptin beta subunit N-terminal fragment {Human (H 95.94
d1q1sc_434 Importin alpha {Mouse (Mus musculus) [TaxId: 10090 95.51
d1q1sc_434 Importin alpha {Mouse (Mus musculus) [TaxId: 10090 94.22
d2vgla_584 Adaptin alpha C subunit N-terminal fragment {Mouse 92.85
d1w9ca_321 Exportin-1 (Xpo1, Crm1) {Human (Homo sapiens) [Tax 90.5
d1wa5b_503 Karyopherin alpha {Baker's yeast (Saccharomyces ce 89.76
d1xqra1264 Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi 86.23
d1wa5b_503 Karyopherin alpha {Baker's yeast (Saccharomyces ce 86.16
d1xqra1264 Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi 86.14
>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.4e-36  Score=373.77  Aligned_cols=755  Identities=13%  Similarity=0.175  Sum_probs=457.0

Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhHHHHHHHHhhc-CCCchHHHHHHHHHHHHHhhcCCCCCChhhHHHH
Q 002041            5 NTVKEALNALYHHPDDAVRMQADRWLQDFQHTIDAWQVADNLLHD-ATSNLETLIFCSQTLRSKVQRDVEELPSEAVRGL   83 (976)
Q Consensus         5 ~~v~~al~~ly~~~d~~~r~~A~~~L~~~q~s~~aw~~~~~lL~~-~~~~~~v~ffaa~~L~~ki~~~w~~l~~~~~~~l   83 (976)
                      +++.+.+... .++|++.|++|+++|+++++.|+.|..+..|+.. .+.+..+|++|+.+||++|+++|..++++.+..+
T Consensus        11 ~ql~~~L~~~-~s~d~~~r~~A~~~L~~~~~~p~~~~~L~~ll~~~~~~~~~~R~~A~i~Lkn~i~~~w~~~~~~~~~~I   89 (888)
T d1qbkb_          11 QQILQLLKES-QSPDTTIQRTVQQKLEQLNQYPDFNNYLIFVLTKLKSEDEPTRSLSGLILKNNVKAHFQNFPNGVTDFI   89 (888)
T ss_dssp             HHHHHHHTTC-CHHHHHHHHHHTTSTTTSTTSTTTTTCTTSSSTTTSCSTTTHHHHTTGGGGGTHHHHTTCSTTTCCHHH
T ss_pred             HHHHHHHHHh-cCCCHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhccCCHHHHHHH
Confidence            3444444433 3467889999999999999999999999888875 2346679999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhccccccCCccchHHHHHhcCCC-CCcHHHHHHHHhhcccccccccccC
Q 002041           84 QDSLNTLLKKFHKGPPKVRTQISIAVAALAVHISAEDWGGGGIVNWLRDEMNSH-PEFVPGFLELLTVLPEEVFNYKIAA  162 (976)
Q Consensus        84 r~~Ll~~l~~~~~~~~~v~~kL~~~La~l~~~~~~~~W~~~~~~~~l~~~l~~~-~~~~~~~L~~L~~l~EE~~~~~~~~  162 (976)
                      |+.++..+..   .++.||++++.+++.++...+++.||+  +++.+.+.+.++ +......+..|..++|+....... 
T Consensus        90 k~~ll~~l~~---~~~~vr~~~~~~i~~i~~~~~~~~Wpe--ll~~L~~~l~s~~~~~~~~al~~L~~i~e~~~~~~~~-  163 (888)
T d1qbkb_          90 KSECLNNIGD---SSPLIRATVGILITTIASKGELQNWPD--LLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDS-  163 (888)
T ss_dssp             HHHHTTGGGC---CCSSTTTTTTTTTHHHHTTTSSCSSTT--TSTTTTTSSTGGGSSCSSSSSTTTHHHHGGGHHHHHT-
T ss_pred             HHHHHHHHcC---CCHHHHHHHHHHHHHHHHHhCccchHH--HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhHHHhhH-
Confidence            9999988754   567899999999999999888889999  999998887643 334456667777777764321000 


Q ss_pred             ChhHHHHHHHHHHHhHHHHHHHHHHhhhhh--HHHHHHHHHHHHhhhccCCCCCcccccchhHHHHHhcCCCcchHHHHH
Q 002041          163 RPERRRQFEKELTSQMEVALSTLTACLHIN--ELKEQVLEAFASWLRLKHRIPGSVLASHPLVLTALSSLHSEILSEASV  240 (976)
Q Consensus       163 ~~~~r~~l~~~l~~~~~~vl~~l~~~l~~~--~~~~~~l~~~~sWi~~~~~i~~~~l~~~~l~~~~~~~L~~~~~~~~a~  240 (976)
                               +......+.++..+.+.++++  .++..+++|+..++...   +...                        
T Consensus       164 ---------~~~~~~~~~ll~~ll~~~~~~~~~vr~~al~~l~~~~~~~---~~~~------------------------  207 (888)
T d1qbkb_         164 ---------DVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISR---TQAL------------------------  207 (888)
T ss_dssp             ---------C---CCSTTTTHHHHTGGGSSSSCSSSTTTHHHHGGGGCC---CSTT------------------------
T ss_pred             ---------HHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhh---hHHH------------------------
Confidence                     001111122222222233322  34445555555544421   1100                        


Q ss_pred             HHHHHHhhhhccCCCCCccCchhHHHHHHHHHHhhHHHhhhccCCHHHHHHHHHHHHHHhhHHHHHHhcCCchhHHHHHH
Q 002041          241 NVISELIHYSAAGSSGGATVNMPLIQVIVPQIMSLKAHLTDSSKDEEDVKAIARLFADMGDSYVELIATGSDESMLIVHA  320 (976)
Q Consensus       241 ~~l~~ii~~~~~~~~~~~~~~~~~i~~l~~~v~~l~~~~~~~~~d~e~~~~~~~l~~~~~~~~~~~l~~~~~~~~~ll~~  320 (976)
                                           ...+..+++.+..+     ..+++.+..+..++.++.+.+.+...+.   ++...++++
T Consensus       208 ---------------------~~~~~~~l~~l~~~-----~~~~~~~vr~~~~~~l~~l~~~~~~~l~---~~l~~i~~~  258 (888)
T d1qbkb_         208 ---------------------MLHIDSFTENLFAL-----AGDEEPEVRKNVCRALVMLLEVRMDRLL---PHMHNIVEY  258 (888)
T ss_dssp             ---------------------CSHHHHCSHHHHTT-----SSCCCSSSTTHHHHTTTTTSCSCTTTTT---TTTTTTTTT
T ss_pred             ---------------------HHHHHHHHHHHHHh-----cCCcchHHHHHHHHHHHHHHHHhHHHHH---HHHHHHHHH
Confidence                                 01111111111110     1122223333445555554443332221   234456677


Q ss_pred             HHhhccCCCcchhhhhHHHHHHHHHHhcccccccccCcccchHHHHHHHHHhhHHHHHHHHHHHHhhccCCCC-------
Q 002041          321 LLEVASHPEYDIASMTFNFWHSLQVILTKRDSYISFGNEASAEAERSRRLQVFRSAYESLVSLVSFRVQYPQD-------  393 (976)
Q Consensus       321 lL~~~~~~~~~vs~~~l~fW~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~l~~k~~~p~d-------  393 (976)
                      ++..+..+++++...+++||..+++.-..                    ...+.+++.+++..++..+.|++.       
T Consensus       259 ~l~~~~~~~e~v~~~a~ef~~~~~e~~~~--------------------~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~  318 (888)
T d1qbkb_         259 MLQRTQDQDENVALEACEFWLTLAEQPIC--------------------KDVLVRHLPKLIPVLVNGMKYSDIDIILLKG  318 (888)
T ss_dssp             TTTTTTSSCHHHHHHHHHHHCCCCSGGGG--------------------TTTTTTSTTTTTTTTTTSSCCSSTTHHHHTT
T ss_pred             HHHhcCCCcHHHHHHHHHHHHHHHHhhhh--------------------HHHHHHHHHHHHHHHHHHhhcchHHHHHHhh
Confidence            77878888999999999999877643211                    112233444455555555555431       


Q ss_pred             -CCCCC----------------------------hhhhHHhHhhhhcccccCCccchhhhhhhhhhhHHHHHHhhcChhH
Q 002041          394 -YQDLS----------------------------LEDLKEFKHTRYDLACCSSSTLTESVMLIAVADVLIDAASVLGGDA  444 (976)
Q Consensus       394 -~~~~~----------------------------~d~~~~f~~~R~~~~~~~~~~~~~~~~~~~~~d~l~~~~~~l~~~~  444 (976)
                       .+.+.                            .++.++..+...   .+....++.   +.+.+.++..+....| +.
T Consensus       319 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~---r~~a~~~L~~l~~~~~-~~  391 (888)
T d1qbkb_         319 DVEEDETIPDSEQDIRPRFHRSRTVAQQHDEDGIEEEDDDDDEIDD---DDTISDWNL---RKCSAAALDVLANVYR-DE  391 (888)
T ss_dssp             TSSCCTTSCCCGGGCCCCCCCCCCCCCCCTTC-----CHHHHTTCC---CSTTSCCSS---HHHHHHHSTTTTTTCC-SS
T ss_pred             hhhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhh---hhhhhhhhH---HHHHHHHHhhHhhhhH-HH
Confidence             00000                            000000001000   011112221   2234555555556666 55


Q ss_pred             HHHHHHHHHHHhHhhcCCCCCCcchhhHHHHHHHHhhcccCcccccchHHHhhhcc-CCC-CcHHHHHHHHHHHHhcHHH
Q 002041          445 TLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVVEAEVMPQVMALLP-KLP-QQPQLLQTVCLTIGAYSKW  522 (976)
Q Consensus       445 ~l~~l~~~l~~~~~~~~~~~~~w~~~Ea~L~~l~~i~e~~~~~~~~~l~~l~~~l~-~~~-~~~~v~~t~~~~ig~y~~~  522 (976)
                      +++.+.+.+.+.+.     +.+|+.+|+++++++++++++...-.++++++++.+. .+. ++|.||.++++++|+|++|
T Consensus       392 il~~~l~~l~~~l~-----s~~~~~reaa~~alg~i~eg~~~~~~~~l~~li~~l~~~l~d~~~~Vr~~a~~~l~~~~~~  466 (888)
T d1qbkb_         392 LLPHILPLLKELLF-----HHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHW  466 (888)
T ss_dssp             SHHHHHHHHHHTTT-----SSSHHHHHHHHHHHHHHTTTSHHHHTTTHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTHHH
T ss_pred             HHHHHHHHHHHhhc-----cchhHHHHHHHHHhhhhhhhHHHHhcccchhhhHHHHHhccCCCHHHHHHHHHHHHHHHHH
Confidence            77878887776642     5789999999999999999887666678888888764 333 4899999999999999999


Q ss_pred             HhhCCCCcchHHHHHHHHHcccCCC-hHHHHHHHHHHHHHHHHhhhhhhcCHHHHHHHHHHHhhccCCCCCCHHhHHHHH
Q 002041          523 FDAASSDPSILASVLSILTSGMSTS-EDTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLV  601 (976)
Q Consensus       523 ~~~~p~~~~~l~~~l~~l~~~l~~~-~~v~~~A~~al~~l~~~~~~~L~~~l~~ll~~~~~~~~~~~~~~l~~~~~~~l~  601 (976)
                      +..... ..++.++++.++..+.++ .+|+.+|+.||..+++.++..+.||++.+++.+...+..     ...+++..++
T Consensus       467 ~~~~~~-~~~~~~~l~~ll~~l~d~~~~V~~~a~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~-----~~~~~~~~~~  540 (888)
T d1qbkb_         467 VVSQPP-DTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSK-----YQHKNLLILY  540 (888)
T ss_dssp             HHSSCH-HHHTTTHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHTTSSGGGHHHHHHHHHHHTTT-----CCHHHHHHHH
T ss_pred             hhhhhh-hhhhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHhh-----hhHHHHHHHH
Confidence            976542 135677777777766554 359999999999999999999999999999999888753     5678888999


Q ss_pred             HHHHHHHhcCChHH-HHHHHHHhhhHHHHHHHHHHhcCCCcccccCcchhhhHHHHHHHHhhhcCCc-ccH-HHHHHHHh
Q 002041          602 EALSMVITELPQVD-AKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHP-EAV-ADAIQRLW  678 (976)
Q Consensus       602 eai~~vi~~~p~~~-~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~-~~~-~~~~~~~~  678 (976)
                      ++++.++...++.- ...++..++.++.+.+....+.         .......+++++.+....... .|. .++++.++
T Consensus       541 ~al~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~---------~~~~~~~le~l~~i~~~~~~~~~~~~~~~~~~~~  611 (888)
T d1qbkb_         541 DAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDE---------DKDLFPLLECLSSVATALQSGFLPYCEPVYQRCV  611 (888)
T ss_dssp             HHHHHHHHHHGGGGCSHHHHHHHHHHHHHHHTTSCTT---------CTTHHHHHHHHHHHHHHSTTTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhhccccchHHHHHHHHHHHHHHHhcccc---------hHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHH
Confidence            99999998766542 2466777766666554332111         122345678888887766431 111 11222222


Q ss_pred             HHHHHHHHhhcCCHHHHHHHHHHHHHHHHHh-hhhhhhhHHHHHHHHHHHHhhcCCccHHHHHHHHHHHhCCCCcchHHH
Q 002041          679 PIFKAIFDIRAWDMRTMESLCRACKYAVRTS-KRFMGITIGAILEEIQGLYQQHQQPCFLYLSSEVIKIFGSDPSCASYL  757 (976)
Q Consensus       679 ~~l~~ll~~~~~~~~v~e~~~~~~~~~~~~~-~~~~~~~l~~l~~~l~~~~~~~~~~~~L~l~~~li~~~~~~~~~~~~l  757 (976)
                      .++...+..                ...... +......-..++            .+.+.+++.++..+|..  +.+.+
T Consensus       612 ~~l~~~l~~----------------~~~~~~~~~~~~~~~~~~~------------~~~l~~l~~l~~~l~~~--~~~~~  661 (888)
T d1qbkb_         612 NLVQKTLAQ----------------AMLNNAQPDQYEAPDKDFM------------IVALDLLSGLAEGLGGN--IEQLV  661 (888)
T ss_dssp             HHHHHHHHH----------------HHHHHHCTTTSCCCCTHHH------------HHHHHHHHHHHHHHTTT--THHHH
T ss_pred             HHHHHHHHH----------------HHHHhcccccccchhHHHH------------HHHHHHHHHHHHHhhhh--hhhhh
Confidence            222211110                000000 000000000000            11234556666666654  33322


Q ss_pred             HHHHHHHHHHHHhhhcCcccCCCCCccHHHHHHHHHHHHhhCCCcccCcCChHHHHHHHHHhcccCCchhHHHHHHHHHH
Q 002041          758 HNLIEALFKRTTCLLTSIEEFTSRPDVADDCFLLASRCIRYCPQLFIPSSVFPSLVDCSMIGITVQHREASNSILTFLSD  837 (976)
Q Consensus       758 ~~~~~~l~~~~~~~l~~~~~~~~~pD~~~~~f~l~~~~~~~~p~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~fl~~  837 (976)
                      ..  ..+.......+.     +.++++.+..|.+++.+.+.++..+.+  .++.++...+.++..........++..+..
T Consensus       662 ~~--~~l~~~l~~~l~-----~~~~~vr~~a~~llgdl~~~~~~~~~~--~l~~~~~~l~~~L~~~~~~v~~~a~~~ig~  732 (888)
T d1qbkb_         662 AR--SNILTLMYQCMQ-----DKMPEVRQSSFALLGDLTKACFQHVKP--CIADFMPILGTNLNPEFISVCNNATWAIGE  732 (888)
T ss_dssp             HT--SCHHHHHHHHHT-----CSSHHHHHHHHHHHHHHHHHCGGGTGG--GHHHHHHHHHHTCCGGGHHHHHHHHHHHHH
T ss_pred             hH--hhHHHHHHHHhC-----CCChHHHHHHHHHHHHHHHhhhHHHHH--HHHHHHHHHHHHhCcCCHHHHHHHHHHHHH
Confidence            21  001111222232     456889999999999999988877644  678888888888877766666777777776


Q ss_pred             hhcccCCCCchhhHHHHHHHHhhchHHHHHHHHHHcc-cCCCCCCcccHHHHHHHHHHHhhHHHHHHHHH----HHhhCC
Q 002041          838 IFDLAKSCKGEEFLSVRDSVIIPRGASITRILIASLT-GALPSSRLETVTYALLALTRAYGVRSLEWAKE----SVSLIP  912 (976)
Q Consensus       838 l~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~ll~~l~-~~~~~~~~~~~~~~L~~l~~~~~~~~~~wl~~----~l~~~p  912 (976)
                      +....+            +-+.++.+.++..++..+. ...++++.++++..|.++...+|+.+...+.+    .+..+|
T Consensus       733 ia~~~~------------~~~~py~~~il~~L~~il~~~~~~~~v~~n~~~~lgrl~~~~p~~~~~~l~~~~~~~~~~l~  800 (888)
T d1qbkb_         733 ISIQMG------------IEMQPYIPMVLHQLVEIINRPNTPKTLLENTAITIGRLGYVCPQEVAPMLQQFIRPWCTSLR  800 (888)
T ss_dssp             HHHHTG------------GGGGGGSHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHCHHHHGGGGGGTHHHHHHHHT
T ss_pred             HHHHHH------------HHhhhhHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHCHHHHHhhHHHHHHHHHHHhc
Confidence            664321            1133555566666666663 35567788999999999999998765433333    223445


Q ss_pred             CCCCCHHHHHHHHHHHHH
Q 002041          913 LTALAEVERSRFLQALSE  930 (976)
Q Consensus       913 ~~~~~~~~k~~f~~~l~~  930 (976)
                      ... +.++|+.-...+..
T Consensus       801 ~~~-d~~ek~~~~~g~~~  817 (888)
T d1qbkb_         801 NIR-DNEEKDSAFRGICT  817 (888)
T ss_dssp             TSC-CSHHHHHHHHHHHH
T ss_pred             cCC-CcHHHHHHHHHHHH
Confidence            322 55566555444443
>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1w9ca_ a.118.1.19 (A:) Exportin-1 (Xpo1, Crm1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1w9ca_ a.118.1.19 (A:) Exportin-1 (Xpo1, Crm1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure