Citrus Sinensis ID: 002042

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970------

MAVNHQQQSLWREVLELTKTAQDRNTDPLTWAIQLSSTLNSAADGDGPTLPSTELAHLLVSHICWDNHVPITWKFLEKALTLKIVPPSLVLALLSTRVISNRQLHPAAYRLYLEFLTRHAFSFASLVNGPNYDKIMNSIDDVLNLSQIFGLKVCESGVLLVEFVFSVVWQLLDASLDDEGLLEFASDKNFKWPTRPQDMEIDGIDGFIDKRSEHHEGLFRANTTMAIELIGEFLQNKVTSRILYLAHMNMPSHWGGFIERLRLLALKSAALRNSKVITPEALLQLASDTRGDLGRKSKTAPQKECHAVAFPGSLMSLAGQCNGTSRSALWLPIDLFLEDAMDGTQVAATSAVEILTGLVKALQVVNGTTWHDTFLGLWIAALRLLQRERDPSEGPVPRIDSSLCMVLSVTTLTVADIIEEEESELIDETEQSPSNLPKDKQAPGRRRKDLVTSLQLLGDFEDMLTPPPFVRSIANQAAAKAIMFISGLTVGNGYYESVSMNGLATSCLGNMRHLIVEACIARNLLDTSAYLWPGYVNASDSNQVPCSIATQMSGWSSLMKGSPLTPSLTNALVVTPASSLAEIEKVYEIAVNGSDDEKICAATVLCGASLVRGWSVQENTILFIIKLLSPPVPADYSGSESHLIGYAALLNTLLVGISSVDCIQIFSLHGWVPLLAAALMPICEVFGSSIPNASWTLSSGEEFSCYAVFSNAFTILVRLWRFHKPPLEQLTVDMPLVASQLSPEYLLLVRNSKLASFGTSPKDQMKSKRFSKNIKFSTDPIFMDSFPKLKRWYRQNEECIASTLTGLVHGTSVHLIVDALLTKMFRKINRSGTPLTSATSGSTNSSGSGLEDVSIKLKVPAWDILEATPFVLDAALAACAHGRLSPRELATGLKELSDCLPATLATVVSYFSAEVTRGLWKPAFMNGTDWPSPATNLSSIEQQIKKILAATGVDVPTVAVGISSYCLLCELLYLLC

cccccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccccccccccHHHHHHHHHccccccccccHHHHHHHHHHcccccHHHHHHHHHccccccccccHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHccccccccccccccEEEHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHcccccccccccccccEEEEEcccccccccccccccccccccccHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccHHHHHHHHccccccHHHHHHHHHHHcccccHHHHHHHHHHccccccccccHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHcccccccEEEHHccccHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHcc

cccccccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccHHHHHHHHcccccccccccHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHccccccccccccEEEEEEEccccccccccccccccccEEEEHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHHHcccEEEccccEEcccccccccccccccccHHHHHccccccHHHHHHHHcccccHHHHHHHHHHHHHcccHHHHHHHHHHHHccHHHccccHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHccccccHHHHHHHHcHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccHHHHccccccccccccHHHHHHHHHcHcccccccccccccccccccccccccccEEEcccHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHcccEccccccccccccHHHHHHHHHHHHHHHHHHHccccccccccccccHcHHHHHHHcc

MAVNHQQQSLWREVLELTKTaqdrntdplTWAIQLSStlnsaadgdgptlpsTELAHLLVSHICWDNHVPITWKFLEKALTLKIVPPSLVLALLSTRVISNRQLHPAAYRLYLEFLTRHAFSfaslvngpnydkiMNSIDDVLNLSQIFGLKVCESGVLLVEFVFSVVWQLLDaslddegllefasdknfkwptrpqdmeidgidgfidkrsehheglfrANTTMAIELIGEFLQNKVTSRILYLAHmnmpshwggFIERLRLLALKSAALrnskvitpEALLQLASDtrgdlgrksktapqkechavafpgslmslagqcngtsrsalwlpIDLFLEDAMDGTQVAATSAVEILTGLVKALQVVNGTTWHDTFLGLWIAALRLLQrerdpsegpvpridsslcmvLSVTTLTVADIIEEEEselideteqspsnlpkdkqapgrrrKDLVTSLQLLgdfedmltpppfvRSIANQAAAKAIMFISGltvgngyyesvsmnglatsclGNMRHLIVEACIARNLldtsaylwpgyvnasdsnqvpcsiatqmsgwsslmkgspltpsltnalvvtpasslAEIEKVYEIAvngsddekICAATVLCGASlvrgwsvqeNTILFIIKllsppvpadysgseshLIGYAALLNTLLVGISSVDCIQIFSLHGWVPLLAAALMPICevfgssipnaswtlssgeefscyavFSNAFTILVRLWrfhkppleqltvdmplvasqlspeYLLLVRNSklasfgtspkdqmkskrfsknikfstdpifmdsfpklKRWYRQNEECIASTLTGLVHGTSVHLIVDALLTKMFRKinrsgtpltsatsgstnssgsgledvsiklkvpawdileatPFVLDAALAACAHGRLSPRELATGLKELSDCLPATLATVVSYFSAEVtrglwkpafmngtdwpspatnlSSIEQQIKKILAatgvdvptvAVGISSYCLLCELLYLLC

mavnhqqqsLWREVLELTKtaqdrntdpLTWAIQLSSTLNSAADGDGPTLPSTELAHLLVSHICWDNHVPITWKFLEKALTLKIVPPSLVLALLSTRVISNRQLHPAAYRLYLEFLTRHAFSFASLVNGPNYDKIMNSIDDVLNLSQIFGLKVCESGVLLVEFVFSVVWQLLDASLDDEGLLEFasdknfkwptrpqdMEIDGIDGFIDKRSEHHEGLFRANTTMAIELIGEFLQNKVTSRILYLAHMNMPSHWGGFIERLRLLALKSAALRnskvitpealLQLASDTRGDLGRKSKTAPQKECHAVAFPGSLMSLAGQCNGTSRSALWLPIDLFLEDAMDGTQVAATSAVEILTGLVKALQVVNGTTWHDTFLGLWIAALRLLQRERDPsegpvpridsslcmVLSVTTLTVADIIEEEESelideteqspsnlpkdkqapgrrrKDLVTSLQLLGDFEDMLTPPPFVRSIANQAAAKAIMFISGLTVGNGYYESVSMNGLATSCLGNMRHLIVEACIARNLLDTSAYLWPGYVNASDSNQVPCSIATQMSGWSSLMKGSPLTPSLTNALVVTPASSLAEIEKVYEIAVNGSDDEKICAATVLCGASLVRGWSVQENTILFIIKLLSPPVPADYSGSESHLIGYAALLNTLLVGISSVDCIQIFSLHGWVPLLAAALMPICEVFGSSIPNASWTLSSGEEFSCYAVFSNAFTILVRLWRFHKPPLEQLTVDMPLVASQLSPEYLLLVRNSKLasfgtspkdqmkskrfsknikfstdpifmdsFPKLKRWYRQNEECIASTltglvhgtSVHLIVDALLTKMFRKINRsgtpltsatsgstnssgsglEDVSIKLKVPAWDILEATPFVLDAALAACAHGRLSPRELATGLKELSDCLPATLATVVSYFSAEVTRGLWKPAFMNGTDWPSPATNLSSIEQQIKKILAATGVDVPTVAVGISSYCLLCELLYLLC

MAVNHQQQSLWREVLELTKTAQDRNTDPLTWAIQLSSTLNSAADGDGPTLPSTELAHLLVSHICWDNHVPITWKFLEKALTLKIVPPSLVLALLSTRVISNRQLHPAAYRLYLEFLTRHAFSFASLVNGPNYDKIMNSIDDVLNLSQIFGLKVCESGVLLVEFVFSVVWQLLDASLDDEGLLEFASDKNFKWPTRPQDMEIDGIDGFIDKRSEHHEGLFRANTTMAIELIGEFLQNKVTSRILYLAHMNMPSHWGGFIErlrllalksaalrNSKVITPEALLQLASDTRGDLGRKSKTAPQKECHAVAFPGSLMSLAGQCNGTSRSALWLPIDLFLEDAMDGTQVAATSAVEILTGLVKALQVVNGTTWHDTFLGLWIAALRLLQRERDPSEGPVPRIDSSLCMVLSVTTLTVADiieeeeselideteQSPSNLPKDKQAPGRRRKDLVTSLQLLGDFEDMLTPPPFVRSIANQAAAKAIMFISGLTVGNGYYESVSMNGLATSCLGNMRHLIVEACIARNLLDTSAYLWPGYVNASDSNQVPCSIATQMSGWSSLMKGSPLTPSLTNALVVTPASSLAEIEKVYEIAVNGSDDEKICAATVLCGASLVRGWSVQENTILFIIKLLSPPVPADYSGSESHLIGYAALLNTLLVGISSVDCIQIFSLHGWVPLLAAALMPICEVFGSSIPNASWTLSSGEEFSCYAVFSNAFTILVRLWRFHKPPLEQLTVDMPLVASQLSPEYLLLVRNSKLASFGTSPKDQMKSKRFSKNIKFSTDPIFMDSFPKLKRWYRQNEECIASTLTGLVHGTSVHLIVDALLTKMFRKINRSGTPLtsatsgstnssgsgLEDVSIKLKVPAWDILEATPFVLDAALAACAHGRLSPRELATGLKELSDCLPATLATVVSYFSAEVTRGLWKPAFMNGTDWPSPATNLSSIEQQIKKILAATGVDVPTVAVGISSycllcellyllc

**********WREVLEL**********PLTWAIQLS****************TELAHLLVSHICWDNHVPITWKFLEKALTLKIVPPSLVLALLSTRVISNRQLHPAAYRLYLEFLTRHAFSFASLVNGPNYDKIMNSIDDVLNLSQIFGLKVCESGVLLVEFVFSVVWQLLDASLDDEGLLEFASDKNFKWPTRPQDMEIDGIDGFIDKRSEHHEGLFRANTTMAIELIGEFLQNKVTSRILYLAHMNMPSHWGGFIERLRLLALKSAALRNSKVITPEALLQL*******************CHAVAFPGSLMSLAGQCNGTSRSALWLPIDLFLEDAMDGTQVAATSAVEILTGLVKALQVVNGTTWHDTFLGLWIAALRLLQ************IDSSLCMVLSVTTLTVADII********************************VTSLQLLGDFEDMLTPPPFVRSIANQAAAKAIMFISGLTVGNGYYESVSMNGLATSCLGNMRHLIVEACIARNLLDTSAYLWPGYVNASDSNQVPCSIATQMSGWSSLM****LTPSLTNALVVTPASSLAEIEKVYEIAVNGSDDEKICAATVLCGASLVRGWSVQENTILFIIKLLSPPVPADYSGSESHLIGYAALLNTLLVGISSVDCIQIFSLHGWVPLLAAALMPICEVFGSSIPNASWTLSSGEEFSCYAVFSNAFTILVRLWRFHKPPLEQLTVDMPLVASQLSPEYLLLVRNSK********************IKFSTDPIFMDSFPKLKRWYRQNEECIASTLTGLVHGTSVHLIVDALLTKMFRKI************************VSIKLKVPAWDILEATPFVLDAALAACAHGRLSPRELATGLKELSDCLPATLATVVSYFSAEVTRGLWKPAFMNGTDWPSPATNLSSIEQQIKKILAATGVDVPTVAVGISSYCLLCELLYLL*

**************LELTK*****NTDPLTWAIQLSSTL***********PSTELAHLLVSHICWDNHVPITWKFLEKALTLKIVPPSLVLALLSTRVISNRQLHPAAYRLYLEFLTRHAFSFASLVNGPNYDKIMNSIDDVLNLSQIFGLKVCESGVLLVEFVFSVVWQLLDASLDDEGLL**************************************ANTTMAIELIGEFLQNKVTSRILYLAHMNMPSHWGGFIERLRLLA*************PEALLQLASDTRGDLGRKSKTAPQKEC**VAF*GSLMSLAGQCNGTSRSALWLPIDLFLEDAMDGTQVAATSAVEILTGLVKALQVVNGTTWHDTFLGLWIAALRLLQRERDPSEGPVPRIDSSLCMVLSVTTLTVADIIEEE***************************DLVTSLQLLGDFEDMLTPPPFVRSIANQAAAKAIMFISGLTV***************SCLGNMRHLIVEACIARNLLDTSAYLWPGYVNASDS*************WSSLMKGSPLTPSLTNALVVTPASSLAEIEKVYEIAVNGSDDEKICAATVLCGASLVRGWSVQENTILFIIKLLSPPVP****GSESHLIGYAALLNTLLVGISSVDCIQIFSLHGWVPLLAAALMPICEVFGSSIPNASW**SSGEEFSCYAVFSNAFTILVRLWRFHKPPLEQLTVDMPLVASQLSPEYLLLVRN*****************************IFMDSFPKLKRWYRQNEECIASTLTGLVHGTSVHLIVDALLTKMF********************************KVPAWDILEATPFVLDAALAACAHGRLSPRELATGLKELSDCLPATLATVVSYFSAEVTRGLWKPAFMNGTDWPSPATNLSSIEQQIKKILAATGVDVPTVAVGISSYCLLCELLYLLC

********SLWREVLELTKTAQDRNTDPLTWAIQLSSTLNSAADGDGPTLPSTELAHLLVSHICWDNHVPITWKFLEKALTLKIVPPSLVLALLSTRVISNRQLHPAAYRLYLEFLTRHAFSFASLVNGPNYDKIMNSIDDVLNLSQIFGLKVCESGVLLVEFVFSVVWQLLDASLDDEGLLEFASDKNFKWPTRPQDMEIDGIDGFIDKRSEHHEGLFRANTTMAIELIGEFLQNKVTSRILYLAHMNMPSHWGGFIERLRLLALKSAALRNSKVITPEALLQLASDTR***********QKECHAVAFPGSLMSLAGQCNGTSRSALWLPIDLFLEDAMDGTQVAATSAVEILTGLVKALQVVNGTTWHDTFLGLWIAALRLLQRERDPSEGPVPRIDSSLCMVLSVTTLTVADIIEEEE*************************KDLVTSLQLLGDFEDMLTPPPFVRSIANQAAAKAIMFISGLTVGNGYYESVSMNGLATSCLGNMRHLIVEACIARNLLDTSAYLWPGYVNASDSNQVPCSIATQMSGWSSLMKGSPLTPSLTNALVVTPASSLAEIEKVYEIAVNGSDDEKICAATVLCGASLVRGWSVQENTILFIIKLLSPPVPADYSGSESHLIGYAALLNTLLVGISSVDCIQIFSLHGWVPLLAAALMPICEVFGSSIPNASWTLSSGEEFSCYAVFSNAFTILVRLWRFHKPPLEQLTVDMPLVASQLSPEYLLLVRNSKLASF***********RFSKNIKFSTDPIFMDSFPKLKRWYRQNEECIASTLTGLVHGTSVHLIVDALLTKMFRKINRSG******************EDVSIKLKVPAWDILEATPFVLDAALAACAHGRLSPRELATGLKELSDCLPATLATVVSYFSAEVTRGLWKPAFMNGTDWPSPATNLSSIEQQIKKILAATGVDVPTVAVGISSYCLLCELLYLLC

********SLWREVLELTKT**DRNTDPLTWAIQLSSTLNSAADGDGPTLPSTELAHLLVSHICWDNHVPITWKFLEKALTLKIVPPSLVLALLSTRVISNRQLHPAAYRLYLEFLTRHAFSFASLVNGPNYDKIMNSIDDVLNLSQIFGLKVCESGVLLVEFVFSVVWQLLDASLDDEGLLEFASDKNFK*******************RSEHHEGLFRANTTMAIELIGEFLQNKVTSRILYLAHMNMPSHWGGFIERLRLLALKSAALRNSKVITPEALLQLASDTRGDLGRKSKTAPQKECHAVAFPGSLMSLAGQCNGTSRSALWLPIDLFLEDAMDGTQVAATSAVEILTGLVKALQVVNGTTWHDTFLGLWIAALRLLQRERDPSEGPVPRIDSSLCMVLSVTTLTVADIIEEEES*******************PGRRRKDLVTSLQLLGDFEDMLTPPPFVRSIANQAAAKAIMFISGLTVGNGYYESVSMNGLATSCLGNMRHLIVEACIARNLLDTSAYLWPGYVNASDSNQVPCSIATQMSGWSSLMKGSPLTPSLTNALVVTPASSLAEIEKVYEIAVNGSDDEKICAATVLCGASLVRGWSVQENTILFIIKLLSPPVPADYSGSESHLIGYAALLNTLLVGISSVDCIQIFSLHGWVPLLAAALMPICEVFGSSIPNASWTLSSGEEFSCYAVFSNAFTILVRLWRFHKPPLEQLTVDMPLVASQLSPEYLLLVRNSKLA*******************KFSTDPIFMDSFPKLKRWYRQNEECIASTLTGLVHGTSVHLIVDALLTKMFRKINR***********************SIKLKVPAWDILEATPFVLDAALAACAHGRLSPRELATGLKELSDCLPATLATVVSYFSAEVTRGLWKPAFMNGTDWPSPATNLSSIEQQIKKILAATGVDVPTVAVGISSYCLLCELLYLLC

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		976	2.2.26 [Sep-21-2011]
Q9LUG9		1309	Mediator of RNA polymeras	yes	no	0.956	0.713	0.561	0.0
F4IN69		1275	Mediator of RNA polymeras	no	no	0.908	0.695	0.573	0.0

>sp\|Q9LUG9\|MD33A_ARATH Mediator of RNA polymerase II transcription subunit 33A OS=Arabidopsis thaliana GN=MED33A PE=1 SV=1	Back alignment and function desciption

 Score = 1056 bits (2731), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 538/959 (56%), Positives = 698/959 (72%), Gaps = 25/959 (2%)

Query: 7   QQSLWREVLELTKTAQDRNTDPLTWAIQLSSTLNSAADGDGPTLPSTELAHLLVSHICWD 66
           ++++W  V+ELTK AQ+   DP  WA QLSS L   A      LPSTELA ++VS+ICWD
Sbjct: 6   RRTVWDCVIELTKMAQENCVDPRLWASQLSSNLKFFA----VELPSTELAEVIVSYICWD 61

Query: 67  NHVPITWKFLEKALTLKIVPPSLVLALLSTRVISNRQLHPAAYRLYLEFLTRHAFSFASL 126
           N+VPI WKFLE+A+ LK+V P +VLALL+ RV+  R    AAYR+YLE L R+ F+    
Sbjct: 62  NNVPIVWKFLERAMALKLVSPLVVLALLADRVVPTRSTQQAAYRIYLELLKRNMFTIKDH 121

Query: 127 VNGPNYDKIMNSIDDVLNLSQIFGLKVCESGVLLVEFVFSVVWQLLDASLDDEGLLEFAS 186
           ++GP+Y K+M S+ ++L LS++F L   + GVLLVEFVF +V QLLDA+L DEGLLE + 
Sbjct: 122 ISGPHYQKVMISVSNILRLSELFDLDTSKPGVLLVEFVFKMVSQLLDAALSDEGLLELSQ 181

Query: 187 DKNFKWPTRPQDMEIDGIDGFIDKRSEHHEGLFRANTTMAIELIGEFLQNKVTSRILYLA 246
           D + +W  + QDMEID  + + ++++   E L   NT MAIELI EFL+N V +R+LYL 
Sbjct: 182 DSSSQWLVKSQDMEIDAPERY-NEKTGSLEKLQSLNTIMAIELIAEFLRNTVIARLLYLV 240

Query: 247 HMNMPSHWGGFIERLRLLALKSAALRNSKVITPEALLQLASDTRGDLGRKSKTAPQKECH 306
             N  S W  F+++++LL   S+AL++SKV+    LLQL S+ R      SK    ++ +
Sbjct: 241 SSNRASKWHEFVQKVQLLGENSSALKHSKVLNSGDLLQLISNRRFGYSYDSKVTSARKSN 300

Query: 307 AVAFPGSLMSLAGQCNGTSRSALWLPIDLFLEDAMDGTQVAATSAVEILTGLVKALQVVN 366
           A+   GSL S AG C+G S S+LWLP+DL  EDAMDG QV  TSA+EI+TGL K L+ +N
Sbjct: 301 AIVDFGSLSSYAGLCHGASLSSLWLPLDLVFEDAMDGYQVNPTSAIEIITGLAKTLKEIN 360

Query: 367 GTTWHDTFLGLWIAALRLLQRERDPSEGPVPRIDSSLCMVLSVTTLTVADIIEEEESELI 426
           G+TWHDTFLGLWIAALRL+QRERDP EGP+PR+D+ LCM L +  L VA++IEE + E +
Sbjct: 361 GSTWHDTFLGLWIAALRLVQRERDPIEGPIPRLDTRLCMSLCIVPLVVANLIEEGKYESV 420

Query: 427 DETEQSPSNLPKDKQAPGRRRKDLVTSLQLLGDFEDMLTPPPFVRSIANQAAAKAIMFIS 486
            E                + R DLVTSLQ+LGDF  +L PP  V S AN+AA KAI+F+S
Sbjct: 421 ME----------------KLRDDLVTSLQVLGDFPGLLAPPKCVVSAANKAATKAILFLS 464

Query: 487 GLTVGNGYYESVSMNGLATSCLGNMRHLIVEACIARNLLDTSAYLWPGYVNASDSNQVPC 546
           G  VG   ++ ++M  +  +C GNMRHLIVEACIARN+LD SAY WPGYVN    NQ+P 
Sbjct: 465 GGNVGKSCFDVINMKDMPVNCSGNMRHLIVEACIARNILDMSAYSWPGYVNGR-INQIPQ 523

Query: 547 SIATQMSGWSSLMKGSPLTPSLTNALVVTPASSLAEIEKVYEIAVNGSDDEKICAATVLC 606
           S+  ++  WSS +KG+PL  ++ N LV  PASSLAE+EK++E+AV GSDDEKI AATVLC
Sbjct: 524 SLPNEVPCWSSFVKGAPLNAAMVNTLVSVPASSLAELEKLFEVAVKGSDDEKISAATVLC 583

Query: 607 GASLVRGWSVQENTILFIIKLLSPPVPADYSGSESHLIGYAALLNTLLVGISSVDCIQIF 666
           GASL RGW++QE+T+ ++ +LLSPPVPADYS +E+HLIGYA +LN ++VGI SVD IQIF
Sbjct: 584 GASLTRGWNIQEHTVEYLTRLLSPPVPADYSRAENHLIGYACMLNVVIVGIGSVDSIQIF 643

Query: 667 SLHGWVPLLAAALMPICEVFGSSIPNASWTLSSGEEFSCYAVFSNAFTILVRLWRFHKPP 726
           SLHG VP LA +LMPICE FGS  P+ SWTL SGE  S Y+VFSNAFT+L++LWRF+ PP
Sbjct: 644 SLHGMVPQLACSLMPICEEFGSYTPSVSWTLPSGEAISAYSVFSNAFTLLLKLWRFNHPP 703

Query: 727 LEQLTVDMPLVASQLSPEYLLLVRNSKLASFGTSPKDQMKSKRFSKNIK-FSTDPIFMDS 785
           +E    D+P V SQL+PE+LL VRNS L S     +D+ + KR S+  +  S  P+F+DS
Sbjct: 704 IEHGVGDVPTVGSQLTPEHLLSVRNSYLVSSEILDRDRNR-KRLSEVARAASCQPVFVDS 762

Query: 786 FPKLKRWYRQNEECIASTLTGLVHGTSVHLIVDALLTKMFRKINRSGTPLTSATSGSTNS 845
           FPKLK WYRQ++ CIA+TL+GL HG+ VH  V+ALL   F K+  S T L    SG+++S
Sbjct: 763 FPKLKVWYRQHQRCIAATLSGLTHGSPVHQTVEALLNMTFGKVRGSQT-LNPVNSGTSSS 821

Query: 846 SGSGLEDVSIKLKVPAWDILEATPFVLDAALAACAHGRLSPRELATGLKELSDCLPATLA 905
           SG+  ED +I+ + PAWDIL+A P+V+DAAL AC HGRLSPR+LATGLK+L+D LPA+LA
Sbjct: 822 SGAASEDSNIRPEFPAWDILKAVPYVVDAALTACTHGRLSPRQLATGLKDLADFLPASLA 881

Query: 906 TVVSYFSAEVTRGLWKPAFMNGTDWPSPATNLSSIEQQIKKILAATGVDVPTVAVGISS 964
           T+VSYFSAEV+RG+WKP FMNG DWPSPATNLS++E+ I KILA TGVD+P++A G SS
Sbjct: 882 TIVSYFSAEVSRGVWKPVFMNGVDWPSPATNLSTVEEYITKILATTGVDIPSLAPGGSS 940

Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. Involved in the repression of phenylpropanoid biosynthesis. May compete with MED33B for common binding partners or for occupancy in Mediator.
Arabidopsis thaliana (taxid: 3702)

>sp\|F4IN69\|MD33B_ARATH Mediator of RNA polymerase II transcription subunit 33B OS=Arabidopsis thaliana GN=MED33B PE=1 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		976
296086711		1388	unnamed protein product [Vitis vinifera]	0.976	0.686	0.708	0.0
359479864		1321	PREDICTED: uncharacterized protein LOC10	0.954	0.705	0.699	0.0
224128668		1315	predicted protein [Populus trichocarpa]	0.949	0.704	0.684	0.0
449444909		1335	PREDICTED: mediator of RNA polymerase II	0.974	0.712	0.683	0.0
255551487		1325	conserved hypothetical protein [Ricinus	0.974	0.717	0.633	0.0
224068803		1295	predicted protein [Populus trichocarpa]	0.927	0.698	0.671	0.0
225432512		1305	PREDICTED: uncharacterized protein LOC10	0.959	0.717	0.642	0.0
449465222		2712	PREDICTED: uncharacterized protein LOC10	0.973	0.350	0.618	0.0
224100311		1304	predicted protein [Populus trichocarpa]	0.961	0.719	0.608	0.0
449516812		1311	PREDICTED: mediator of RNA polymerase II	0.961	0.715	0.613	0.0

>gi\|296086711\|emb\|CBI32346.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

 Score = 1366 bits (3536), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 679/959 (70%), Positives = 791/959 (82%), Gaps = 6/959 (0%)

Query: 7    QQSLWREVLELTKTAQDRNTDPLTWAIQLSSTLNSAADGDGPTLPSTELAHLLVSHICWD 66
            Q  LW  VLELTK+AQ+RN+DPL WA+QLSS LNSA    G +LPS ELAHLLVSHICW 
Sbjct: 67   QPGLWDSVLELTKSAQERNSDPLLWAVQLSSILNSA----GTSLPSPELAHLLVSHICWA 122

Query: 67   NHVPITWKFLEKALTLKIVPPSLVLALLSTRVISNRQLHPAAYRLYLEFLTRHAFSFASL 126
            N+VPITWKFLEKA++ +I PP LVLALLS+RVI NR+L+PAAYRLY+E L RH FSF S 
Sbjct: 123  NNVPITWKFLEKAVSGRIAPPMLVLALLSSRVIPNRRLYPAAYRLYMELLKRHTFSFTSE 182

Query: 127  VNGPNYDKIMNSIDDVLNLSQIFGLKVCESGVLLVEFVFSVVWQLLDASLDDEGLLEFAS 186
            +NGPNY KIM SIDDVL+LSQIFGL+VCE G L+VEF+FS+VWQLLDASLDDEGLLE A 
Sbjct: 183  INGPNYQKIMKSIDDVLHLSQIFGLQVCEPGALVVEFIFSIVWQLLDASLDDEGLLELAP 242

Query: 187  DKNFKWPTRPQDMEIDGIDGFIDKRSEHHEGLFRANTTMAIELIGEFLQNKVTSRILYLA 246
            +K  KWPTR QDM+IDG D F +KR++  EGL + NT MAIE+IG+F QNKVTS+ILYLA
Sbjct: 243  EKKSKWPTRSQDMDIDGQDSFNEKRTDRQEGLCKVNTVMAIEIIGDFFQNKVTSKILYLA 302

Query: 247  HMNMPSHWGGFIERLRLLALKSAALRNSKVITPEALLQLASDTRGDLGRKSKTAPQKECH 306
              NM SHWG FI+RLR+LA  S ALRNSK I+P+ALLQL SD R  L R+ KT+ QK+ H
Sbjct: 303  RRNMFSHWGSFIQRLRVLAANSTALRNSKHISPDALLQLTSDARIVLTRECKTSLQKQFH 362

Query: 307  AVAFPGSLMSLAGQCNGTSRSALWLPIDLFLEDAMDGTQVAATSAVEILTGLVKALQVVN 366
            AV   GSL+S AGQC+G S SALWLPID+FLED MD +QV ATSAVE LTGLVKALQ VN
Sbjct: 363  AVVASGSLISSAGQCHGVSWSALWLPIDMFLEDTMDDSQVVATSAVETLTGLVKALQAVN 422

Query: 367  GTTWHDTFLGLWIAALRLLQRERDPSEGPVPRIDSSLCMVLSVTTLTVADIIEEEESELI 426
            GT+WH+TFLG+WIAALRL+QRERDPSEGPVPR+D+ LCM+LS+T L + +IIEEEES LI
Sbjct: 423  GTSWHNTFLGVWIAALRLVQRERDPSEGPVPRLDTCLCMLLSITPLAIVNIIEEEESTLI 482

Query: 427  DETEQSPSNLPKDKQAPGRRRKDLVTSLQLLGDFEDMLTPPPFVRSIANQAAAKAIMFIS 486
            DE  +SP+NL K+KQ   + RKDL++SLQLLGD+E +LT P  +  +ANQA AKA+MF+S
Sbjct: 483  DEAGRSPTNLRKEKQISVKHRKDLISSLQLLGDYEGLLTVPQSLSLVANQAVAKAMMFVS 542

Query: 487  GLTVGNGYYESVSMNGLATSCLGNMRHLIVEACIARNLLDTSAYLWPGYVNASDSNQVPC 546
            G+T G+GY + +SMN L  +C GNMRHLIVEACIARNLLDTSAYLWPGYVN   SNQ+P 
Sbjct: 543  GVTSGSGYLDCMSMNDLPMNCSGNMRHLIVEACIARNLLDTSAYLWPGYVNGR-SNQLPR 601

Query: 547  SIATQMSGWSSLMKGSPLTPSLTNALVVTPASSLAEIEKVYEIAVNGSDDEKICAATVLC 606
            S+   M GWSSLMKGSPLTP + N LV TPASSLAEIEK+YEIAVNGSDDEKI AA +LC
Sbjct: 602  SVPGPMPGWSSLMKGSPLTPPMINVLVSTPASSLAEIEKIYEIAVNGSDDEKISAAAILC 661

Query: 607  GASLVRGWSVQENTILFIIKLLSPPVPADYSGSESHLIGYAALLNTLLVGISSVDCIQIF 666
            GASLVRGW++QE+T+ FI KLLSPPVPADYSG++SHLIGYA  LN LLVGISSVDC+QI+
Sbjct: 662  GASLVRGWNIQEHTVFFITKLLSPPVPADYSGTDSHLIGYAPFLNVLLVGISSVDCVQIY 721

Query: 667  SLHGWVPLLAAALMPICEVFGSSIPNASWTLSSGEEFSCYAVFSNAFTILVRLWRFHKPP 726
            SLHG VP LA ALMPICEVFGS  P  S TL++GEE S + VFSNAF +L+RLWRF+ PP
Sbjct: 722  SLHGLVPQLAGALMPICEVFGSCAPKVSCTLTTGEEISSHQVFSNAFNLLLRLWRFNHPP 781

Query: 727  LEQ-LTVDMPLVASQLSPEYLLLVRNSKLASFGTSPKDQMKSKRFSKNIKFSTDPIFMDS 785
            LE  +  D+P V SQL+PEYLLLVRNS+LA+ G + K   K +R S+    S +PIFMDS
Sbjct: 782  LEHVMGGDIPPVGSQLTPEYLLLVRNSQLANSGNTTKGPFKYRRPSRISSPSPEPIFMDS 841

Query: 786  FPKLKRWYRQNEECIASTLTGLVHGTSVHLIVDALLTKMFRKINRSGTPLTSATSGSTNS 845
            FPKLK WYRQ++ CIAS L+GLVHGT VH +VDA+L  MFRK+ R G PLT   SGS+NS
Sbjct: 842  FPKLKLWYRQHQACIASALSGLVHGTPVHQVVDAVLNMMFRKMGRGGQPLTPTASGSSNS 901

Query: 846  SGSGLEDVSIKLKVPAWDILEATPFVLDAALAACAHGRLSPRELATGLKELSDCLPATLA 905
            SGSG ED S++LK+PAWDILEA PFVLDAAL ACAHGRLSPRELATGLK+LSD LPA+LA
Sbjct: 902  SGSGPEDASLRLKLPAWDILEAIPFVLDAALTACAHGRLSPRELATGLKDLSDFLPASLA 961

Query: 906  TVVSYFSAEVTRGLWKPAFMNGTDWPSPATNLSSIEQQIKKILAATGVDVPTVAVGISS 964
            T+ SYFSAEVTRG+WKPAFMNGTDWPSPA NLS +EQQIKK+LAATGVDVP++A   SS
Sbjct: 962  TIASYFSAEVTRGIWKPAFMNGTDWPSPAANLSMVEQQIKKVLAATGVDVPSLAAVGSS 1020

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|359479864\|ref\|XP_002271735.2\| PREDICTED: uncharacterized protein LOC100254459 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|224128668\|ref\|XP_002320389.1\| predicted protein [Populus trichocarpa] gi\|222861162\|gb\|EEE98704.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|449444909\|ref\|XP_004140216.1\| PREDICTED: mediator of RNA polymerase II transcription subunit 33A-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|255551487\|ref\|XP_002516789.1\| conserved hypothetical protein [Ricinus communis] gi\|223543877\|gb\|EEF45403.1\| conserved hypothetical protein [Ricinus communis]	Back alignment and taxonomy information

>gi\|224068803\|ref\|XP_002302829.1\| predicted protein [Populus trichocarpa] gi\|222844555\|gb\|EEE82102.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|225432512\|ref\|XP_002277484.1\| PREDICTED: uncharacterized protein LOC100247741 [Vitis vinifera] gi\|297736973\|emb\|CBI26174.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|449465222\|ref\|XP_004150327.1\| PREDICTED: uncharacterized protein LOC101216833 [Cucumis sativus]	Back alignment and taxonomy information

>gi\|224100311\|ref\|XP_002311827.1\| predicted protein [Populus trichocarpa] gi\|222851647\|gb\|EEE89194.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|449516812\|ref\|XP_004165440.1\| PREDICTED: mediator of RNA polymerase II transcription subunit 33A-like [Cucumis sativus]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		976
TAIR\|locus:2039356		1275	REF4 "AT2G48110" [Arabidopsis	0.423	0.323	0.664	6.1e-257
TAIR\|locus:2088050		1309	RFR1 "AT3G23590" [Arabidopsis	0.527	0.393	0.603	2e-166

TAIR\|locus:2039356 REF4 "AT2G48110" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1420 (504.9 bits), Expect = 6.1e-257, Sum P(3) = 6.1e-257
 Identities = 275/414 (66%), Positives = 325/414 (78%)

Query:   552 MSGWSSLMKGSPLTPSLTNALVVTPASSLAEIEKVYEIAVNGSDDEKICAATVLCGASLV 611
             +S WS +MKGSPLTPSLTN+L+ TPASSLAEIEK+YE+A  GS+DEKI  A++LCGASL 
Sbjct:   492 ISCWSLVMKGSPLTPSLTNSLITTPASSLAEIEKMYEVATTGSEDEKIAVASILCGASLF 551

Query:   612 RGWSVQENTILFIIKLLSPPVPADYSGSESHLIGYAALLNTLLVGISSVDCIQIFSLHGW 671
             RGWS+QE+ I+FI+ LLSPP PAD SGS SHLI  A  LN LLVGIS +DC+ IFSLHG 
Sbjct:   552 RGWSIQEHVIIFIVTLLSPPAPADLSGSYSHLINSAPFLNVLLVGISPIDCVHIFSLHGV 611

Query:   672 VPLLAAALMPICEVFGSSIPNASWTLSSGEEFSCYAVFSNAFTILVRLWRFHKPPLEQLT 731
             VPLLA ALMPICE FGS +PN +WTL +GE  S +AVFS AFT+L+RLWRF  PPL+ + 
Sbjct:   612 VPLLAGALMPICEAFGSGVPNITWTLPTGELISSHAVFSTAFTLLLRLWRFDHPPLDYVL 671

Query:   732 VDMPLVASQLSPEYLLLVRNSKLASFGTSPKDQMKSKRFSKNIKFSTDPIFMDSFPKLKR 791
              D+P V  Q SPEYLLLVRN +L  FG SPKD+M  +RFSK I  S DPIFMDSFP+LK+
Sbjct:   672 GDVPPVGPQPSPEYLLLVRNCRLECFGKSPKDRMARRRFSKVIDISVDPIFMDSFPRLKQ 731

Query:   792 WYRQNEECIASTLTGLVHGTSVHLIVDALLTKMFRKINRSGTPLXXXXXXXXXXXXXXLE 851
             WYRQ++EC+AS L+ L  G+ VH IVD+LL+ MF+K N+ G+                 +
Sbjct:   732 WYRQHQECMASILSELKTGSPVHHIVDSLLSMMFKKANKGGSQSLTPSSGSSSLSTSGGD 791

Query:   852 DVSIKLKVPAWDILEATPFVLDAALAACAHGRLSPRELATGLKELSDCLPATLATVVSYF 911
             D S +LK+PAWDILEA PFVLDAAL ACAHG LSPRELATGLK L+D LPATL T+VSYF
Sbjct:   792 DSSDQLKLPAWDILEAAPFVLDAALTACAHGSLSPRELATGLKILADFLPATLGTMVSYF 851

Query:   912 SAEVTRGLWKPAFMNGTDWPSPATNLSSIEQQIKKILAATGVDVPTV-AVGISS 964
             S+EVTRGLWKP  MNGTDWPSPA NL+S+EQQI+KILAATGVDVP + A GIS+
Sbjct:   852 SSEVTRGLWKPVSMNGTDWPSPAANLASVEQQIEKILAATGVDVPRLPADGISA 905

GO:0009698 "phenylpropanoid metabolic process" evidence=IMP

GO:0016020 "membrane" evidence=TAS

GO:2000762 "regulation of phenylpropanoid metabolic process" evidence=IGI

TAIR\|locus:2088050 RFR1 "AT3G23590" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9LUG9	MD33A_ARATH	No assigned EC number	0.5610	0.9569	0.7135	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		976
PF11277		990	Med24_N: Mediator complex subunit 24 N-terminal; I	95.96
PRK02866		147	cyanate hydratase; Validated	85.76

>PF11277 Med24_N: Mediator complex subunit 24 N-terminal; InterPro: IPR021429 This subunit of the Mediator complex appears to be conserved only from insects to humans	Back alignment and domain information

Probab=95.96  E-value=1.6  Score=54.80  Aligned_cols=367  Identities=17%  Similarity=0.194  Sum_probs=220.8

Q ss_pred             HHhhCCCchhHHHHHHHHhhhcCCCCCCCCCcHHHHHHHHHhhhcc-CCCcchHHHHHHHHhcCCCChHHHHHhhhcccc
Q 002042           21 AQDRNTDPLTWAIQLSSTLNSAADGDGPTLPSTELAHLLVSHICWD-NHVPITWKFLEKALTLKIVPPSLVLALLSTRVI   99 (976)
Q Consensus        21 AQer~~~PLlWA~evas~l~sa~~g~Gv~LPS~eLA~~LVs~lCfd-nn~ps~WKfLe~AlssrLv~PLhvLALLSsRVI   99 (976)
                      |=.++-+|..|++-+=..+..     |++-=-.+||+.|+.+..-. ...|-+=.||++|+++++|+...||.-++--- 
T Consensus        13 aW~ERw~d~~w~i~iK~~~~~-----g~~~d~~~LAe~LL~qa~iG~~Pn~LiLSYLk~al~sqlvs~~~vl~~I~k~~-   86 (990)
T PF11277_consen   13 AWRERWTDIQWGINIKKIIPR-----GVSGDIYNLAECLLQQAFIGPSPNPLILSYLKYALSSQLVSYAAVLEAISKFD-   86 (990)
T ss_pred             HHHhcCChhhHHHHHHHHccC-----CCcccHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHhcchhHHHHHHHHhhcc-
Confidence            334456789999999888864     23323367999999987663 36678999999999999999999887664321 


Q ss_pred             cCcccchhHHHHHHHHhhhcccccccccCCCchhHHHhcHHHHhccccccCCccccCCeeehhHHHHHHHHHhhhccccc
Q 002042          100 SNRQLHPAAYRLYLEFLTRHAFSFASLVNGPNYDKIMNSIDDVLNLSQIFGLKVCESGVLLVEFVFSVVWQLLDASLDDE  179 (976)
Q Consensus       100 P~R~~qPeAYRLYLELL~r~aFs~~~~i~~pn~~kimkSID~~L~LS~~~g~~~~e~G~~vV~Fvfsiv~~LlDa~LdD~  179 (976)
                        ...+|.--.=-||++...-=      ...|+-|                   .|-++ +--=++++|.-|+-+.-.-.
T Consensus        87 --~f~k~~c~~~ll~~l~~~~~------~~sC~gk-------------------~EE~i-L~~Alls~v~WLL~~~~~~l  138 (990)
T PF11277_consen   87 --DFSKPHCINALLELLESIID------GLSCRGK-------------------AEECI-LCRALLSLVHWLLQCYEYSL  138 (990)
T ss_pred             --ccchhHHHHHHHHHHHHhcC------CcccCCc-------------------chHHH-HHHHHHHHHHHHHHHHHHHH
Confidence              13445555555555543111      1111111                   22223 22224455544443321100


Q ss_pred             CcccccccCCCCCCCCCCcccccCCCCccccccchhhhhhcchhHHHHHHHHHHHhhhhHHHHHHHHhhcCCCchhhHHH
Q 002042          180 GLLEFASDKNFKWPTRPQDMEIDGIDGFIDKRSEHHEGLFRANTTMAIELIGEFLQNKVTSRILYLAHMNMPSHWGGFIE  259 (976)
Q Consensus       180 Gl~~~~~~~~~~~~~~~qdMeiD~~~~~~~kr~e~~E~Lrk~NT~mAiEvi~~fl~nK~ts~iLrL~~~Nmp~~w~~f~Q  259 (976)
                             +       +.+|+.    +.    ..++.+     +.-+..+++++++++++...+||+|+.+=|+-|+...|
T Consensus       139 -------~-------~~~e~~----~~----~~~~e~-----~l~~~~~~L~~i~~s~f~~aLL~Iak~ee~e~w~~v~q  191 (990)
T PF11277_consen  139 -------E-------KLRENN----EL----SAEQEE-----ILEKCCQRLEKILESTFLRALLYIAKLEEPESWNEVEQ  191 (990)
T ss_pred             -------H-------HHhhcC----CC----cchHHH-----HHHHHHHHHHHHHcCchHHHHHHHhhhccHhHHHHHHH
Confidence                   0       011111    10    122333     34567899999999999999999999999999999999


Q ss_pred             HHHHHHHhHHHhhhccCCChHHHHHHhhhcccc--cCCCcc-ccCccceeeeccCCccccccccccCccccccchhhHHh
Q 002042          260 RLRLLALKSAALRNSKVITPEALLQLASDTRGD--LGRKSK-TAPQKECHAVAFPGSLMSLAGQCNGTSRSALWLPIDLF  336 (976)
Q Consensus       260 RLqllea~s~al~~~k~~~~~~l~~L~~~~~~v--~~~e~k-~~~~~~~~~~~~~~s~~s~~g~~~Gas~SAlWlPfDiy  336 (976)
                      +..-|+......  .-+..+..+.+-..++...  ...+-+ .+..+..+.+   .++            =..+    |+
T Consensus       192 ~~~~l~~~l~~~--~~~~~~~tL~~~l~kl~sl~~~~~~m~~v~~~~~~e~~---~~s------------VqaL----I~  250 (990)
T PF11277_consen  192 KCAKLKNSLSNS--GFVKSNVTLRDQLEKLASLEKSIPSMKPVNSEQLSETI---FPS------------VQAL----IA  250 (990)
T ss_pred             HHHHHHHHhccc--ccccCchHHHHHHHHHHHHHhcCccccCCCcccCCCCC---cch------------HHHH----HH
Confidence            999988743331  1112344444444443331  111110 1111111100   000            0122    33


Q ss_pred             hhhccCCccccchhhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhhhcCCCCCCCCCccccchhhhhhhhhhhHhh
Q 002042          337 LEDAMDGTQVAATSAVEILTGLVKALQVVNGTTWHDTFLGLWIAALRLLQRERDPSEGPVPRIDSSLCMVLSVTTLTVAD  416 (976)
Q Consensus       337 lEdaMDG~qv~~tSaiEiLt~liKtLQ~vN~asW~dtFlaLWiaaLRLVQReRdp~EGPiPhldsrLCMLLsI~pLaIa~  416 (976)
                      +|-.|     +.++-++-+.+-...+|.+.+=++.+-|.=+|=|.+=-.-   |..||.   -|++.|   +.+-|=|=.
T Consensus       251 vE~ll-----Npt~dtq~lVeqL~mlqrlk~~~~~~ly~EIirACfl~L~---e~~~ts---~E~~w~---AFtFlKlPq  316 (990)
T PF11277_consen  251 VEVLL-----NPTSDTQQLVEQLMMLQRLKGIPNPRLYCEIIRACFLGLI---ESPETS---EELKWC---AFTFLKLPQ  316 (990)
T ss_pred             HHHHH-----ccCccHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHhhhc---cCCCCC---cchhhh---hhhhhhHHH
Confidence            44333     4577888888889999999999999999999988775332   222444   578888   555555555


Q ss_pred             HhhhhhhhhcccccCCCCCCCCCCCCCccchhhHHHHhhhhcccccccCCchhhhhHHHHHHHHHHHHHhccccCCCccc
Q 002042          417 IIEEEESELIDETEQSPSNLPKDKQAPGRRRKDLVTSLQLLGDFEDMLTPPPFVRSIANQAAAKAIMFISGLTVGNGYYE  496 (976)
Q Consensus       417 IieEe~~~~~~~~~~~p~~~~~~k~~~~~~R~~LisSLQvLG~y~gLL~PP~~vv~aANqAA~KAa~FiSg~~~~~g~~~  496 (976)
                      ||.+=-.......+   ++    +  ++.-..+++.++..|=++..||-                               
T Consensus       317 Il~~L~~~~~~~~~---~d----~--~~~~~~dl~~Afe~Ll~~~pLLD-------------------------------  356 (990)
T PF11277_consen  317 ILKQLHALSRGDKP---QD----K--IAEYSEDLVEAFELLLQLTPLLD-------------------------------  356 (990)
T ss_pred             HHHHHHHhccCCCc---cc----c--cccccHHHHHHHHHHHccchhhH-------------------------------
Confidence            55543332110011   01    1  34556789999999999888871                               


Q ss_pred             cccCCCCcccccCchhHHHHHHHHhhcccccc
Q 002042          497 SVSMNGLATSCLGNMRHLIVEACIARNLLDTS  528 (976)
Q Consensus       497 ~~~~~d~~~~~~GNmrHLIVEaCIaRnLlDtS  528 (976)
                         .-|  +||.-|.--.+.+-|-..+||+-+
T Consensus       357 ---~~D--~kc~Cn~v~~LL~e~~K~~lise~  383 (990)
T PF11277_consen  357 ---KMD--QKCNCNCVECLLNELVKLGLISES  383 (990)
T ss_pred             ---HHh--hhcCCcHHHHHHHHHHHcCcccHH
Confidence               122  578889999999999999999866

It is essential for correct retinal development in fish. Subunit composition of the mediator contributes to the control of differentiation in the vertebrate CNS as there are divergent functions of the mediator subunits Crsp34/Med27, Trap100/Med24, and Crsp150/Med14 [].

>PRK02866 cyanate hydratase; Validated	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		976
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-07
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-06

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 52.5 bits (125), Expect = 6e-07
 Identities = 77/614 (12%), Positives = 168/614 (27%), Gaps = 212/614 (34%)

Query: 334 DLFLEDAMDGTQVAATSAV--EIL------TGLVKALQVV--NGTTWHDTFLGL------ 377
           +   +D  D  +   +      I+      +G ++    +          F+        
Sbjct: 32  NFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINY 91

Query: 378 -WIAALRLLQRERDPSEGPVPRIDSSLCMVLSVTTLTVADIIEEEESELIDETEQSPSNL 436
            ++ +  +   +R PS                        ++     E  D         
Sbjct: 92  KFLMS-PIKTEQRQPS------------------------MMTRMYIEQRDRLYNDNQVF 126

Query: 437 PKDKQAPGRRRKDLVTSLQ--LLGDFEDMLTPPPFVRSIANQAAAKAIMFISGLTVGNGY 494
            K        R      L+  LL      L P   V              I G       
Sbjct: 127 AKYN----VSRLQPYLKLRQALLE-----LRPAKNV-------------LIDG------- 157

Query: 495 YESVSMNGLATSCLGNMRHLIVEACIARNLLDTSAY--LW--PGYVNASDSN----QVPC 546
                + G   + +       ++ C++  +     +   W      N+ ++     Q   
Sbjct: 158 -----VLGSGKTWV------ALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLL 206

Query: 547 SIATQMSGWSSLMKGSPLTPSLTNALVVTPASSLAEI--EKVYEIAVNGSDDEKICAATV 604
                   W+S    S       +++     + L  +   K YE  +    +  +  A  
Sbjct: 207 YQIDPN--WTSRSDHSSNIKLRIHSI----QAELRRLLKSKPYENCLLVLLN--VQNAKA 258

Query: 605 L------CGASLV--RGWSVQENTILFIIKLLSPPVPADY--SGSESHLIGYAALLNTLL 654
                  C   L+  R   V                  D+  + + +H+      L+   
Sbjct: 259 WNAFNLSC-KILLTTRFKQV-----------------TDFLSAATTTHIS-----LDHHS 295

Query: 655 VGISSVDCIQIFSLHGWV-------PLLAAALMP-ICEVFGSSIPN--ASW--------- 695
           + ++  +   +     ++       P       P    +   SI +  A+W         
Sbjct: 296 MTLTPDEVKSLLLK--YLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCD 353

Query: 696 -----------TLSSGEEFSCY---AVFSNAFTI----LVRLWRFHKPPLEQLTVDMPLV 737
                       L   E    +   +VF  +  I    L  +W       + +  D+ +V
Sbjct: 354 KLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIW------FDVIKSDVMVV 407

Query: 738 ASQLSPEYLLLVRNSKLASFGTSPKDQMKSKRFSKNIKFSTDPIFMDSFPKLKRWYRQNE 797
            ++L  +Y L+ +  K ++    P   ++ K   +N +++     +D +   K +   ++
Sbjct: 408 VNKLH-KYSLVEKQPKESTISI-PSIYLELKVKLEN-EYALHRSIVDHYNIPKTF--DSD 462

Query: 798 ECIASTLTG-----LVHGTSVHLIV------DALLTKMF-------RKINRSGTPLTSAT 839
           + I   L       + H    HL          L   +F       +KI    T   +A+
Sbjct: 463 DLIPPYLDQYFYSHIGH----HLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAW-NAS 517

Query: 840 SGSTNSSGSGLEDV 853
               N+    L+ +
Sbjct: 518 GSILNT----LQQL 527

PyMOL of 1vt4

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00