Citrus Sinensis ID: 002062

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970---
MDEMNDSVSSNPEQFLNDGERLFNGIAADSNENQGGHDPHPFWKFEAQEGTSTSMLDLDWCWPDEISRPGGHTNNHNSSDCWSAASEAHCLNNNFLPAAAAAAASDAVFPPLLNVVTDGAENADAAVMKRQLQNTEKPLEMAHNSLQHLPSFDTHIVSLESDGESLMSSESNGDEIQSQSTVNLRGEIPEVNSQNPELGMVFSSQEEAYMFYTTYAKRIGFSVRKAKVRRLSNGAIRKRLFYCSRQGFRAKKQSTKATKYQRKETRTGCDAMVEFTVENGKWMISGFTPEHNHDLEGKSKPVVGSSTKVSEDHSISTTMNKAATVKEAQPLNSVGFQGINCPGIPCDEKTSCPKLLDGQSLIKYFRRLEMEAPSFSYTVQVNAENCLTGFFWTDGRSRIDYDYFGDVVILDTTFRIEANNMIYAPFLGLNHHRQYVLFGGAFLLDDSKDSFIWLLRTFLDSMGRRQPSTIFTDGYQAMADAIKMVLPKTQHLLGIWYILRNAKANLSKCYGEPGFNSLFNKCIFDCESEAEFESMWESLLEQYELCANPWLKTQYMLRRKWAHCFCKSAFSAGIRSTQHCYDISHVFHSLTSKATTPLQFVQQYFKVAEQQRREELYEDFRCNGSAPPTILRSNAIEKEAAKIYSCTMFKLFRAELLECLSVAIEEIQGDGMTAKFRLNEEGQKKEKIVEFNCVETHLTCSCKKYESVGILCVHALKVLNAKNIFHIPPQYILKRWTKSAKDGMVVNGHEGEVVDDSQRHLHLDESKLMHKALNVITKSLPFEGTRMIADDYLSIALKNIEDALRTKNIGQLNTRDVYDAYKDAAAAADANGIISVETQRMESNPSTVNQQEALNYRIKCQLKRKYDNDGRETKSKSSDGAITHCHSFKEVTKGGDYQGSKKHASRSYSVGENSRHSACVSALPPLPSQSTGNQFKDHNKSRLNVQVRLEETEKERERLEEIEKEIKSWFQPM
cccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHcccccccccccccccccccccHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEccHHHHHHHHHHHHHHcccEEEEEEEEEcccccEEEEEEEEcccccccccccccccccccccccccccEEEEEEEEccEEEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHcccEEEEEEEcccccccccEEcccccHHHHcccccEEEEcccccccccccccccEEEEccccccEEEccEEcccccccHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHcccccccccHHHHHHccccccccccccccccccccccccccccHHHHHHHHHHHHHHcccccccHHHHHHHHHccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHccHHHHHHHHHHHHHHHccEEEEEEccccEEEEEEccccccccEEEEEEEcccEEEEEEEcccccccccHHHHHHHHcccccccccHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHcccccccccccccccccccccccccHHHHHHHHcccccccccccccccccccccccccccccEEcccccccccccccccccccccccccccEEEcccccccccccccccccccccEEEEEEcHHHHHHHHHHHHHHHHHHcccccc
cccccccccccHHHHcccccccEcEEEEccccccccccccccEEEEEcccccccccccccccccccccccccccccccccHHHHHHHHHHHcccHHHHHHHHHHcHcccccHHcccccHHccccccccccccccccccccHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEccHHHHHHHHHHHHHHcccEEEEEEEEEccccEEEEEEEEEcccccccccccccccccccccccccccEEEEEEEcccEEEEEEEEccccccccccHHHHHcHccccccHcccccHHHHHHccccccccccccccccccHcHHHHHHHHHcccccHHHHHHHHHHHHHHcccEEEEEEEcccccEEEEEEEcccHHHHHHHcccEEEEEcEEccccccccEEEEEEEcccccEEEEEHHHHccccHHHHHHHHHHHHHHHcccccEEEEEccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcHHcccHHHHHHHHHHHHccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHccHHHHHHHHHHHHHHHcccEEEEcccccEEEEEEEEcccccEEEEEEcccccEEEEEEHHEEccccHHHHHHHHHHHccccccccHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccHHccccccccccccccccccccccccEEEEccccccccccccccccccccccccccccccccccccccccccccEccccccccccccEEEEEEEcccHHHHHHHHHHHHHHHHHcccc
mdemndsvssnpeqflndgERLFNgiaadsnenqgghdphpfwkfeaqegtstsmldldwcwpdeisrpgghtnnhnssdcwsaaseahclnnnfLPAAAAAaasdavfppllnvvtdgaenaDAAVMKRQLQNTEKPLEMAHNSlqhlpsfdtHIVSLEsdgeslmssesngdeiqsqstvnlrgeipevnsqnpelgmvfsSQEEAYMFYTTYAKRIGFSVRKAKVRRLSNGAIRKRLFYCSrqgfrakkqsTKATKYQRKETRTGCDAMVEFTVENGkwmisgftpehnhdlegkskpvvgsstkvsedhsisttmnkaatvkeaqplnsvgfqgincpgipcdektscpklldgqSLIKYFRRLemeapsfsytvqvnaencltgffwtdgrsridydyfgdvVILDTTFrieannmiyapflglnhhrQYVLFGgafllddsKDSFIWLLRTFLDsmgrrqpstiftDGYQAMADAIKMVLPKTQHLLGIWYILRNAKANlskcygepgfnslfnkcifdcESEAEFESMWESLLEQYELCANPWLKTQYMLRRKWAHCFcksafsagirstqhcydishvfhsltskattpLQFVQQYFKVAEQQRREELYEDfrcngsapptilrsNAIEKEAAKIYSCTMFKLFRAELLECLSVAIEEIqgdgmtakfrlneegqkkekivefncvethltcsckkyesVGILCVHALKVlnaknifhippqyILKRWTKSakdgmvvnghegevvddsqrhlhlDESKLMHKALNVITkslpfegtrmIADDYLSIALKNIEDALrtknigqlntrdVYDAYKDAAAAADANGIISVETQrmesnpstvnqQEALNYRIKCQLKrkydndgretkskssdgaithchsfkevtkggdyqgskkhasrsysvgensrhsacvsalpplpsqstgnqfkdhnksrLNVQVRLEETEKERERLEEIEKEIKSWFQPM
mdemndsvssnpeqFLNDGERLFNGIAADSNENQGGHDPHPFWKFEAQEGTSTSMLDLDWCWPDEISRPGGHTNNHNSSDCWSAASEAHCLNNNFLPAAAAAAASDAVFPPLLNVVTDGAENADAAVMKRQLQNTEKPLEMAHNSLQHLPSFDTHIVSLESDGESLMSSESNGDEIQSQSTVNLRGEipevnsqnpeLGMVFSSQEEAYMFYTTYAKrigfsvrkakvrrlsngairkrlfycsrqgfrakkqstkatkyqrketrtgcdAMVEFTVENGKWMISGFTPEHNHDLEGKSKPVVGSSTKVSEDHSISTTMNKAATVKEAQPLNSVGFQGINCPGIPCDEKTSCPKLLDGQSLIKYFRRLEMEAPSFSYTVQVNAENCLTGFFWTDGRSRIDYDYFGDVVILDTTFRIEANNMIYAPFLGLNHHRQYVLFGGAFLLDDSKDSFIWLLRTFldsmgrrqpSTIFTDGYQAMADAIKMVLPKTQHLLGIWYILRNAKANLSKCYGEPGFNSLFNKCIFDCESEAEFESMWESLLEQYELCANPWLKTQYMLRRKWAHCFCKSAFSAGIRSTQHCYDISHVFHSLTSKATTPLQFVQQYFKVAEQQRREELYEdfrcngsapptilrsnAIEKEAAKIYSCTMFKLFRAELLECLSVAIEEIQGDGMTAKFRLNEEGQKKEKIVEFNCVETHLTCSCKKYESVGILCVHALKVLNAKNIFHIPPQYILKRWTKSAKDGMVVNGHEGEVVDDSQRHLHLDESKLMHKALNVITKSLPFEGTRMIADDYLSIALKNIEDalrtknigqlntRDVYDAYKDAAAAADANGIISVETQRMesnpstvnqqeaLNYRIKCQlkrkydndgretkskssdgaithchsfkevtkggdyqgsKKHASRSYSVGENSRHSACVSALPPLPSqstgnqfkdhnksrlnvqvrleetekererlEEIEKEIKSWFQPM
MDEMNDSVSSNPEQFLNDGERLFNGIAADSNENQGGHDPHPFWKFEAQEGTSTSMLDLDWCWPDEISRPGGHTNNHNSSDCWSAASEAHCLNNNFLPaaaaaaaSDAVFPPLLNVVTDGAENADAAVMKRQLQNTEKPLEMAHNSLQHLPSFDTHIVSLESDGESLMSSESNGDEIQSQSTVNLRGEIPEVNSQNPELGMVFSSQEEAYMFYTTYAKRIGFSVRKAKVRRLSNGAIRKRLFYCSRQGFRAKKQSTKATKYQRKETRTGCDAMVEFTVENGKWMISGFTPEHNHDLEGKSKPVVGSSTKVSEDHSISTTMNKAATVKEAQPLNSVGFQGINCPGIPCDEKTSCPKLLDGQSLIKYFRRLEMEAPSFSYTVQVNAENCLTGFFWTDGRSRIDYDYFGDVVILDTTFRIEANNMIYAPFLGLNHHRQYVLFGGAFLLDDSKDSFIWLLRTFLDSMGRRQPSTIFTDGYQAMADAIKMVLPKTQHLLGIWYILRNAKANLSKCYGEPGFNSLFNKCIFDCESEAEFESMWESLLEQYELCANPWLKTQYMLRRKWAHCFCKSAFSAGIRSTQHCYDISHVFHSLTSKATTPLQFVQQYFKVAEQQRREELYEDFRCNGSAPPTILRSNAIEKEAAKIYSCTMFKLFRAELLECLSVAIEEIQGDGMTAKFRLNEEGQKKEKIVEFNCVETHLTCSCKKYESVGILCVHALKVLNAKNIFHIPPQYILKRWTKSAKDGMVVNGHEGEVVDDSQRHLHLDESKLMHKALNVITKSLPFEGTRMIADDYLSIALKNIEDALRTKNIGQLNTRDVydaykdaaaaadaNGIISVETQRMESNPSTVNQQEALNYRIKCQLKRKYDNDGRETKSKSSDGAITHCHSFKEVTKGGDYQGSKKHASRSYSVGENSRHSACVSALPPLPSQSTGNQFKDHNKSRLNVQVrleetekererleeiekeikSWFQPM
*****************************************FWKFEA***TSTSMLDLDWCWPDEI*************DCWSAASEAHCLNNNFLPAAAAAAASDAVFPPLLNVVTDG*********************************************************************************VFSSQEEAYMFYTTYAKRIGFSVRKAKVRRLSNGAIRKRLFYCSRQGFR*****************TGCDAMVEFTVENGKWMISGF********************************************NSVGFQGINCPGIPCDEKTSCPKLLDGQSLIKYFRRLEMEAPSFSYTVQVNAENCLTGFFWTDGRSRIDYDYFGDVVILDTTFRIEANNMIYAPFLGLNHHRQYVLFGGAFLLDDSKDSFIWLLRTFLDSMGRRQPSTIFTDGYQAMADAIKMVLPKTQHLLGIWYILRNAKANLSKCYGEPGFNSLFNKCIFDCESEAEFESMWESLLEQYELCANPWLKTQYMLRRKWAHCFCKSAFSAGIRSTQHCYDISHVFHSLTSKATTPLQFVQQYFKVAEQQRREELYEDFRCNGSAPPTILRSNAIEKEAAKIYSCTMFKLFRAELLECLSVAIEEIQGDGMTAKFRLNEEGQKKEKIVEFNCVETHLTCSCKKYESVGILCVHALKVLNAKNIFHIPPQYILKRWTKSAKDGMVVNGHEGEVV*****HLHLDESKLMHKALNVITKSLPFEGTRMIADDYLSIALKNIEDALRTKNIGQLNTRDVYDAYKDAAAAADANGIIS*******************NYRIKCQ****************************************************************************************************************
****************NDGERLFN*****************FWKFEAQEGTSTSMLDLDWCWPDEI******************************************************************************************************************************SQNPELGMVFSSQEEAYMFYTTYAKRIGFSVRKAKVRRLSNGAIRKRLFYCSRQGF****************TRTGCDAMVEFTVENGKWMISGFTPEHNHDLEGKSKPVVGSSTKVSEDHSISTTMNKAATVKEAQPLNSVGFQGINCPGIPCDEKTSCPKLLDGQSLIKYFRRLEMEAPSFSYTVQVNAENCLTGFFWTDGRSRIDYDYFGDVVILDTTFRIEANNMIYAPFLGLNHHRQYVLFGGAFLLDDSKDSFIWLLRTFLDSMGRRQPSTIFTDGYQAMADAIKMVLPKTQHLLGIWYILRNAKANLSKCYGEPGFNSLFNKCIFDCESEAEFESMWESLLEQYELCANPWLKTQYMLRRKWAHCFCKSAFSAGIRSTQHCYDISHVFHSLTSKATTPLQFVQQYFKVAEQQRREELYEDFRCNGSAPPTILRSNAIEKEAAKIYSCTMFKLFRAELLECLSVAIEEIQGDGMTAKFRLNEEGQKKEKIVEFNCVETHLTCSCKKYESVGILCVHALKVLNAKNIFHIPPQYILKRWTKSAKDGM****************LHLDESKLMHKALNVITKSLPFEGTRMIADDYLSIALKNI*****************************************************************************************************************************************************************************
************EQFLNDGERLFNGIAADSNENQGGHDPHPFWKFEAQEGTSTSMLDLDWCWPDEISRPGGHTNNHNSSDCWSAASEAHCLNNNFLPAAAAAAASDAVFPPLLNVVTDGAENADAAVMKRQLQNTEKPLEMAHNSLQHLPSFDTHIVSLESD******************TVNLRGEIPEVNSQNPELGMVFSSQEEAYMFYTTYAKRIGFSVRKAKVRRLSNGAIRKRLFYCSRQGF*****************RTGCDAMVEFTVENGKWMISGFTPEHNHDLEGKSKPV***************TMNKAATVKEAQPLNSVGFQGINCPGIPCDEKTSCPKLLDGQSLIKYFRRLEMEAPSFSYTVQVNAENCLTGFFWTDGRSRIDYDYFGDVVILDTTFRIEANNMIYAPFLGLNHHRQYVLFGGAFLLDDSKDSFIWLLRTFLDSMGRRQPSTIFTDGYQAMADAIKMVLPKTQHLLGIWYILRNAKANLSKCYGEPGFNSLFNKCIFDCESEAEFESMWESLLEQYELCANPWLKTQYMLRRKWAHCFCKSAFSAGIRSTQHCYDISHVFHSLTSKATTPLQFVQQYFKVAEQQRREELYEDFRCNGSAPPTILRSNAIEKEAAKIYSCTMFKLFRAELLECLSVAIEEIQGDGMTAKFRLNEEGQKKEKIVEFNCVETHLTCSCKKYESVGILCVHALKVLNAKNIFHIPPQYILKRWTKSAKDGMVVNGHEGEVVDDSQRHLHLDESKLMHKALNVITKSLPFEGTRMIADDYLSIALKNIEDALRTKNIGQLNTRDVYDAYKDAAAAADANGIISVETQR********NQQEALNYRIKCQLKRK**************GAITHCHSFKEVTKG*************************VSALPPLPSQSTGNQFKDHNKSRLNVQVRLEETEKERERLEEIEKEIKSWFQPM
*********SNPEQFLNDGERLFNGIAADSN**QGGHDPHPFWKFEAQEGTSTSMLDLDWCWPDEISRPG******NSSDCWSAASEAHCLNNNFLPAAAAAAASDAVFPPLLNVVTD*************************************************************************NSQNPELGMVFSSQEEAYMFYTTYAKRIGFSVRKAKVRRLSNGAIRKRLFYCSRQ*******************RTGCDAMVEFTVENGKWMISGFTPEHNHDLEGKSKPVVGSSTKVSEDHSISTTMNKAATVKEAQPLNSVGFQGINCPGIPCDEKTSCPKLLDGQSLIKYFRRLEMEAPSFSYTVQVNAENCLTGFFWTDGRSRIDYDYFGDVVILDTTFRIEANNMIYAPFLGLNHHRQYVLFGGAFLLDDSKDSFIWLLRTFLDSMGRRQPSTIFTDGYQAMADAIKMVLPKTQHLLGIWYILRNAKANLSKCYGEPGFNSLFNKCIFDCESEAEFESMWESLLEQYELCANPWLKTQYMLRRKWAHCFCKSAFSAGIRSTQHCYDISHVFHSLTSKATTPLQFVQQYFKVAEQQRREELYEDFRCNGSAPPTILRSNAIEKEAAKIYSCTMFKLFRAELLECLSVAIEEIQGDGMTAKFRLNEEGQKKEKIVEFNCVETHLTCSCKKYESVGILCVHALKVLNAKNIFHIPPQYILKRWTKSAKDG********EVVDDSQRHLHLDESKLMHKALNVITKSLPFEGTRMIADDYLSIALKNIEDALRTK*************************************************************************AITHCHSFKEVTKGGDYQGSKKHASRS**VGENSRHSACVSALPPLPSQSTGNQFKDHNKSRLNVQVRLEETEKERERLEEIEKEIKSWFQP*
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MDEMNDSVSSNPEQFLNDGERLFNGIAADSNENQGGHDPHPFWKFEAQEGTSTSMLDLDWCWPDEISRPGGHTNNHNSSDCWSAASEAHCLNNNFLPAAAAAAASDAVFPPLLNVVTDGAENADAAVMKRQLQNTEKPLEMAHNSLQHLPSFDTHIVSLESDGESLMSSESNGDEIQSQSTVNLRGEIPEVNSQNPELGMVFSSQEEAYMFYTTYAKRIGFSVRKAKVRRLSNGAIRKRLFYCSRQGFRAKKQSTKATKYQRKETRTGCDAMVEFTVENGKWMISGFTPEHNHDLEGKSKPVVGSSTKVSEDHSISTTMNKAATVKEAQPLNSVGFQGINCPGIPCDEKTSCPKLLDGQSLIKYFRRLEMEAPSFSYTVQVNAENCLTGFFWTDGRSRIDYDYFGDVVILDTTFRIEANNMIYAPFLGLNHHRQYVLFGGAFLLDDSKDSFIWLLRTFLDSMGRRQPSTIFTDGYQAMADAIKMVLPKTQHLLGIWYILRNAKANLSKCYGEPGFNSLFNKCIFDCESEAEFESMWESLLEQYELCANPWLKTQYMLRRKWAHCFCKSAFSAGIRSTQHCYDISHVFHSLTSKATTPLQFVQQYFKVAEQQRREELYEDFRCNGSAPPTILRSNAIEKEAAKIYSCTMFKLFRAELLECLSVAIEEIQGDGMTAKFRLNEEGQKKEKIVEFNCVETHLTCSCKKYESVGILCVHALKVLNAKNIFHIPPQYILKRWTKSAKDGMVVNGHEGEVVDDSQRHLHLDESKLMHKALNVITKSLPFEGTRMIADDYLSIALKNIEDALRTKNIGQLNTRDVYDAYKDAAAAADANGIISVETQRMESNPSTVNQQEALNYRIKCQLKRKYDNDGRETKSKSSDGAITHCHSFKEVTKGGDYQGSKKHASRSYSVGENSRHSACVSALPPLPSQSTGNQFKDHNKSxxxxxxxxxxxxxxxxxxxxxxxxIKSWFQPM
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query973 2.2.26 [Sep-21-2011]
Q9SZL8788 Protein FAR1-RELATED SEQU yes no 0.611 0.755 0.321 3e-90
Q9ZVC9851 Protein FAR1-RELATED SEQU no no 0.568 0.649 0.318 2e-82
Q9SWG3827 Protein FAR-RED IMPAIRED no no 0.587 0.691 0.297 8e-76
Q9M8J3764 Protein FAR1-RELATED SEQU no no 0.540 0.688 0.309 2e-72
Q3E7I5788 Protein FAR1-RELATED SEQU no no 0.546 0.675 0.312 7e-70
Q9SSQ4703 Protein FAR1-RELATED SEQU no no 0.596 0.825 0.282 9e-65
Q6NQJ7732 Protein FAR1-RELATED SEQU no no 0.546 0.726 0.289 3e-63
Q3EBQ3807 Protein FAR1-RELATED SEQU no no 0.515 0.622 0.287 6e-63
Q9LIE5839 Protein FAR-RED ELONGATED no no 0.613 0.711 0.275 8e-63
Q9SZL7545 Protein FAR1-RELATED SEQU no no 0.446 0.796 0.301 4e-60
>sp|Q9SZL8|FRS5_ARATH Protein FAR1-RELATED SEQUENCE 5 OS=Arabidopsis thaliana GN=FRS5 PE=2 SV=1 Back     alignment and function desciption
 Score =  333 bits (855), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 200/623 (32%), Positives = 327/623 (52%), Gaps = 28/623 (4%)

Query: 196 PELGMVFSSQEEAYMFYTTYAKRIGFSVRKAKVRRLS-NGAIRKRLFYCSRQGFR---AK 251
           P  G+ F S+E A  FY +YA+RIGFS R +  RR   +GAI +R F C+++GFR    K
Sbjct: 73  PYDGLEFESEEAAKAFYNSYARRIGFSTRVSSSRRSRRDGAIIQRQFVCAKEGFRNMNEK 132

Query: 252 KQSTKATKYQRKETRTGCDAMVEFTVEN-GKWMISGFTPEHNHDLEG-------KSKPVV 303
           +   +  K  R  TR GC A +   +++ GKW++SGF  +HNH+L         +S   +
Sbjct: 133 RTKDREIKRPRTITRVGCKASLSVKMQDSGKWLVSGFVKDHNHELVPPDQVHCLRSHRQI 192

Query: 304 GSSTKVSEDHSISTTMNK----AATVKEAQPLNSVGFQGINCPGIPCDEKTSCPKLLDG- 358
               K   D   +  M      +A +KE   ++ VGF  ++C     + +    K ++G 
Sbjct: 193 SGPAKTLIDTLQAAGMGPRRIMSALIKEYGGISKVGFTEVDCRNYMRNNRQ---KSIEGE 249

Query: 359 -QSLIKYFRRLEMEAPSFSYTVQVNAENCLTGFFWTDGRSRIDYDYFGDVVILDTTFRIE 417
            Q L+ Y R++  + P+F Y+VQ + +  +   FW D ++ +D+ +FGD V  DTT+R  
Sbjct: 250 IQLLLDYLRQMNADNPNFFYSVQGSEDQSVGNVFWADPKAIMDFTHFGDTVTFDTTYRSN 309

Query: 418 ANNMIYAPFLGLNHHRQYVLFGGAFLLDDSKDSFIWLLRTFLDSMGRRQPSTIFTDGYQA 477
              + +APF G+NHH Q +LFG AF++++++ SF+WL  T+L +M    P +I TD    
Sbjct: 310 RYRLPFAPFTGVNHHGQPILFGCAFIINETEASFVWLFNTWLAAMSAHPPVSITTDHDAV 369

Query: 478 MADAIKMVLPKTQHLLGIWYILRNAKANLSKCY-GEPGFNSLFNKCIFDCESEAEFESMW 536
           +  AI  V P  +H    W+IL+  +  LS  +   P F S F+KC+   ES  +FE  W
Sbjct: 370 IRAAIMHVFPGARHRFCKWHILKKCQEKLSHVFLKHPSFESDFHKCVNLTESVEDFERCW 429

Query: 537 ESLLEQYELCANPWLKTQYMLRRKWAHCFCKSAFSAGIRSTQHCYDISHVFHSLTSKATT 596
            SLL++YEL  + WL+  Y  RR+W   + +  F A +  T     I+  F    + +T 
Sbjct: 430 FSLLDKYELRDHEWLQAIYSDRRQWVPVYLRDTFFADMSLTHRSDSINSYFDGYINASTN 489

Query: 597 PLQFVQQYFKVAEQQRREELYEDFRCNGSAPPTILRSNAIEKEAAKIYSCTMFKLFRAEL 656
             QF + Y K  E +  +E+  D+    S PP +   + +EK+A+++Y+  +F  F+ EL
Sbjct: 490 LSQFFKLYEKALESRLEKEVKADYDTMNS-PPVLKTPSPMEKQASELYTRKLFMRFQEEL 548

Query: 657 LECLSVAIEEIQGDGMTAKFRLNEEGQK-KEKIVEFNCVETHLTCSCKKYESVGILCVHA 715
           +  L+    +   DG    +++ + G+  K   V+FN +E    CSC+ +E  GI+C H 
Sbjct: 549 VGTLTFMASKADDDGDLVTYQVAKYGEAHKAHFVKFNVLEMRANCSCQMFEFSGIICRHI 608

Query: 716 LKVLNAKNIFHIPPQYILKRWTKSAKDGMVVNGHEGEVVDDSQRHLHLDESKLMHKALNV 775
           L V    N+  +PP YILKRWT++AK  ++ + +      +      +  + L HKA N 
Sbjct: 609 LAVFRVTNLLTLPPYYILKRWTRNAKSSVIFDDYNLHAYANYLESHTVRYNTLRHKASNF 668

Query: 776 ITKSLPFEGTRMIADDYLSIALK 798
           + ++    G  +   D   +AL+
Sbjct: 669 VQEA----GKSLYTCDVAVVALQ 687
Putative transcription activator involved in regulating light control of development.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9ZVC9|FRS3_ARATH Protein FAR1-RELATED SEQUENCE 3 OS=Arabidopsis thaliana GN=FRS3 PE=2 SV=2 Back     alignment and function description
>sp|Q9SWG3|FAR1_ARATH Protein FAR-RED IMPAIRED RESPONSE 1 OS=Arabidopsis thaliana GN=FAR1 PE=1 SV=1 Back     alignment and function description
>sp|Q9M8J3|FRS7_ARATH Protein FAR1-RELATED SEQUENCE 7 OS=Arabidopsis thaliana GN=FRS7 PE=2 SV=1 Back     alignment and function description
>sp|Q3E7I5|FRS12_ARATH Protein FAR1-RELATED SEQUENCE 12 OS=Arabidopsis thaliana GN=FRS12 PE=2 SV=1 Back     alignment and function description
>sp|Q9SSQ4|FRS6_ARATH Protein FAR1-RELATED SEQUENCE 6 OS=Arabidopsis thaliana GN=FRS6 PE=2 SV=1 Back     alignment and function description
>sp|Q6NQJ7|FRS4_ARATH Protein FAR1-RELATED SEQUENCE 4 OS=Arabidopsis thaliana GN=FRS4 PE=2 SV=2 Back     alignment and function description
>sp|Q3EBQ3|FRS2_ARATH Protein FAR1-RELATED SEQUENCE 2 OS=Arabidopsis thaliana GN=FRS2 PE=2 SV=1 Back     alignment and function description
>sp|Q9LIE5|FHY3_ARATH Protein FAR-RED ELONGATED HYPOCOTYL 3 OS=Arabidopsis thaliana GN=FHY3 PE=1 SV=1 Back     alignment and function description
>sp|Q9SZL7|FRS9_ARATH Protein FAR1-RELATED SEQUENCE 9 OS=Arabidopsis thaliana GN=FRS9 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query973
224138102715 predicted protein [Populus trichocarpa] 0.611 0.832 0.461 1e-156
242050362781 hypothetical protein SORBIDRAFT_02g03456 0.619 0.772 0.358 1e-110
326487428773 predicted protein [Hordeum vulgare subsp 0.618 0.778 0.368 1e-108
414886879779 TPA: FAR1-domain family sequence isoform 0.611 0.763 0.357 1e-107
414886878690 TPA: FAR1-domain family sequence [Zea ma 0.611 0.862 0.357 1e-107
326498635777 predicted protein [Hordeum vulgare subsp 0.665 0.833 0.336 1e-106
115466626780 Os06g0166100 [Oryza sativa Japonica Grou 0.614 0.766 0.357 1e-104
222635024792 hypothetical protein OsJ_20251 [Oryza sa 0.614 0.755 0.357 1e-104
357160812823 PREDICTED: protein FAR1-RELATED SEQUENCE 0.619 0.732 0.354 1e-104
218197656819 hypothetical protein OsI_21811 [Oryza sa 0.614 0.730 0.357 1e-103
>gi|224138102|ref|XP_002322730.1| predicted protein [Populus trichocarpa] gi|222867360|gb|EEF04491.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  560 bits (1444), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 301/652 (46%), Positives = 402/652 (61%), Gaps = 57/652 (8%)

Query: 116 VTDGAENADAAVMKRQLQNTEKPLEMAHNSLQHLPSFDTHIVSLESDGESLMSSESN--G 173
           V D  E   A  +++ ++  +   EM  NS ++  S D   +  ES  + ++ S+SN   
Sbjct: 107 VKDQWEKEGAEFIRKGVEELQD--EMVDNSNENPISLDIQSLPSESSEDDVLLSDSNENN 164

Query: 174 DEIQSQSTVNLRGEIPEVNSQNPELGMVFSSQEEAYMFYTTYAKRIGFSVRKAKVRRLSN 233
            EI +       GE  + NSQ PELGMVFSS+EEAY FY +YA  IGF+           
Sbjct: 165 SEIPATWAFEANGETWKSNSQVPELGMVFSSEEEAYEFYKSYADEIGFN----------- 213

Query: 234 GAIRKRLFYCSRQGFRAKKQSTKATKYQRKETRTGCDAMVEFTVENGKWMISGFTPEHNH 293
                                     Y+RKET+TGCDA +   VENGKW+IS  + EHNH
Sbjct: 214 --------------------------YKRKETQTGCDAKIPCAVENGKWVISQVSLEHNH 247

Query: 294 DLEGKSKPVVGSSTKVSEDHSISTTMNKAATVKEAQPLNSVGFQGINCPGIPC-----DE 348
            LE + + V+GS TK + +  +        T  EA+    VG +G+    + C     D+
Sbjct: 248 PLEDRRR-VIGSHTKTNSEAPLMI-----CTDNEAEMAKDVGNKGVQSSNMGCTVCVPDK 301

Query: 349 KTSCPKLLDGQSLIKYFRRLEMEAPSFSYTVQVNAENCLTGFFWTDGRSRIDYDYFGDVV 408
           + +  +    Q L+ YFRRL++E  SF Y VQ+++    T F W DGRS++DYDYFGDV+
Sbjct: 302 RINSLQPEAAQCLLNYFRRLQVEDLSFFYAVQLDSNGYTTNFLWRDGRSKVDYDYFGDVL 361

Query: 409 ILDTTFRIEANNMIYAPFLGLNHHRQYVLFGGAFLLDDSKDSFIWLLRTFLDSMGRRQPS 468
           ILD TFRIE + +I AP  GLNHHRQ VLFG AFLL++S DSF+WLL TF+++M R QP 
Sbjct: 362 ILDKTFRIEEHTIICAPLWGLNHHRQQVLFGCAFLLNESTDSFVWLLETFMEAMDRHQPK 421

Query: 469 TIFTDGYQAMADAIKMVLPKTQHLLGIWYILRNAKANLSKCYGEPGFNSLFNKCIFDCES 528
           TIFTD  + M DA+K VLP  +H +GIWYI +NA   LS  Y +PGF  LFNKCI DC++
Sbjct: 422 TIFTDENELMVDAVKAVLPDAEHRIGIWYIRQNALKQLSALYMQPGFEILFNKCISDCQT 481

Query: 529 EAEFESMWESLLEQYELCANPWLKTQYMLRRKWAHCFCKSAFSAGIRSTQHCYDISHVFH 588
           E EFES WESLLE+++L  NPWL + Y  R +WA    K  F AG+   QH  +I  VF 
Sbjct: 482 EEEFESRWESLLERFDLSENPWLSSLYTSRERWACVLIKKTFCAGL---QHGENIESVFQ 538

Query: 589 SLTSKATTPLQFVQQYFKVAEQQRREELYEDFRCNGSAPPTILRSNAIEKEAAKIYSCTM 648
            L ++ T  L+F QQY +V +++R EEL EDF CNG+A  TIL  +AIE++AA IY+ T+
Sbjct: 539 ILQNENTGLLEFAQQYLEVVKRRRLEELDEDFHCNGTAQVTILTGSAIERQAADIYTRTL 598

Query: 649 FKLFRAELLECLSVAIEEIQGDGMTAKFRLNEEGQKKEKIVEFNCVETHLTCSCKKYESV 708
           FK F+ E L+CLSV IEE   +     ++L EEG  KE +VEFNC+++ + CSCKK+ES 
Sbjct: 599 FKTFQEEFLKCLSVTIEETASNETITTYKLTEEGH-KESVVEFNCLDSGVACSCKKFESF 657

Query: 709 GILCVHALKVLNAKNIFHIPPQYILKRWTKSAKDGMVVNGHEGEVVDDSQRH 760
           GILCV  LKVLNA+NIFHIP +Y+LKRWTKSAK G V   +E E+ D +++ 
Sbjct: 658 GILCVRYLKVLNARNIFHIPHKYVLKRWTKSAKYG-VPYEYEQEMADKTKQQ 708

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|242050362|ref|XP_002462925.1| hypothetical protein SORBIDRAFT_02g034560 [Sorghum bicolor] gi|241926302|gb|EER99446.1| hypothetical protein SORBIDRAFT_02g034560 [Sorghum bicolor] Back     alignment and taxonomy information
>gi|326487428|dbj|BAJ89698.1| predicted protein [Hordeum vulgare subsp. vulgare] Back     alignment and taxonomy information
>gi|414886879|tpg|DAA62893.1| TPA: FAR1-domain family sequence isoform 1 [Zea mays] gi|414886880|tpg|DAA62894.1| TPA: FAR1-domain family sequence isoform 2 [Zea mays] Back     alignment and taxonomy information
>gi|414886878|tpg|DAA62892.1| TPA: FAR1-domain family sequence [Zea mays] Back     alignment and taxonomy information
>gi|326498635|dbj|BAK02303.1| predicted protein [Hordeum vulgare subsp. vulgare] Back     alignment and taxonomy information
>gi|115466626|ref|NP_001056912.1| Os06g0166100 [Oryza sativa Japonica Group] gi|55296036|dbj|BAD67598.1| putative far-red impaired response protein [Oryza sativa Japonica Group] gi|55296143|dbj|BAD67861.1| putative far-red impaired response protein [Oryza sativa Japonica Group] gi|113594952|dbj|BAF18826.1| Os06g0166100 [Oryza sativa Japonica Group] Back     alignment and taxonomy information
>gi|222635024|gb|EEE65156.1| hypothetical protein OsJ_20251 [Oryza sativa Japonica Group] Back     alignment and taxonomy information
>gi|357160812|ref|XP_003578884.1| PREDICTED: protein FAR1-RELATED SEQUENCE 5-like [Brachypodium distachyon] Back     alignment and taxonomy information
>gi|218197656|gb|EEC80083.1| hypothetical protein OsI_21811 [Oryza sativa Indica Group] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query973
TAIR|locus:2121060788 FRS5 "FAR1-related sequence 5" 0.633 0.781 0.315 8.6e-88
TAIR|locus:2082420764 FRS7 "FAR1-related sequence 7" 0.483 0.615 0.309 3.2e-81
TAIR|locus:2059304851 FRS3 "FAR1-related sequence 3" 0.615 0.703 0.316 4.1e-81
TAIR|locus:2144930788 FRS12 "FAR1-related sequence 1 0.484 0.597 0.309 3.1e-78
TAIR|locus:2129665827 FAR1 "FAR-RED IMPAIRED RESPONS 0.645 0.759 0.299 2.1e-75
TAIR|locus:2014639732 FRS4 "FAR1-related sequence 4" 0.546 0.726 0.291 5.7e-67
TAIR|locus:2062606807 FRS2 "FAR1-related sequence 2" 0.394 0.475 0.304 5.8e-64
TAIR|locus:2035144703 FRS6 "FAR1-related sequence 6" 0.602 0.833 0.288 6.6e-64
TAIR|locus:2090394839 FHY3 "far-red elongated hypoco 0.567 0.657 0.287 3.1e-60
TAIR|locus:2121003545 FRS9 "FAR1-related sequence 9" 0.448 0.8 0.3 1.9e-58
TAIR|locus:2121060 FRS5 "FAR1-related sequence 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 877 (313.8 bits), Expect = 8.6e-88, P = 8.6e-88
 Identities = 204/647 (31%), Positives = 337/647 (52%)

Query:   183 NLRGEIPEVNSQNPELGMVFSSQEEAYMFYTTYAKRIGFSVRKAKVRRLS-NGAIRKRLF 241
             N   E  ++    P  G+ F S+E A  FY +YA+RIGFS R +  RR   +GAI +R F
Sbjct:    60 NQEEEACDLLDLEPYDGLEFESEEAAKAFYNSYARRIGFSTRVSSSRRSRRDGAIIQRQF 119

Query:   242 YCSRQGFR---AKKQSTKATKYQRKETRTGCDAMVEFTVEN-GKWMISGFTPEHNHDLEG 297
              C+++GFR    K+   +  K  R  TR GC A +   +++ GKW++SGF  +HNH+L  
Sbjct:   120 VCAKEGFRNMNEKRTKDREIKRPRTITRVGCKASLSVKMQDSGKWLVSGFVKDHNHELVP 179

Query:   298 -------KSKPVVGSSTKVSEDHSISTTMNK----AATVKEAQPLNSVGFQGINCPGIPC 346
                    +S   +    K   D   +  M      +A +KE   ++ VGF  ++C     
Sbjct:   180 PDQVHCLRSHRQISGPAKTLIDTLQAAGMGPRRIMSALIKEYGGISKVGFTEVDCRNYMR 239

Query:   347 DEKTSCPKLLDG--QSLIKYFRRLEMEAPSFSYTVQVNAENCLTGFFWTDGRSRIDYDYF 404
             + +    K ++G  Q L+ Y R++  + P+F Y+VQ + +  +   FW D ++ +D+ +F
Sbjct:   240 NNRQ---KSIEGEIQLLLDYLRQMNADNPNFFYSVQGSEDQSVGNVFWADPKAIMDFTHF 296

Query:   405 GDVVILDTTFRIEANNMIYAPFLGLNHHRQYVLFGGAFLLDDSKDSFIWLLRTFLDSMGR 464
             GD V  DTT+R     + +APF G+NHH Q +LFG AF++++++ SF+WL  T+L +M  
Sbjct:   297 GDTVTFDTTYRSNRYRLPFAPFTGVNHHGQPILFGCAFIINETEASFVWLFNTWLAAMSA 356

Query:   465 RQPSTIFTDGYQAMADAIKMVLPKTQHLLGIWYILRNAKANLSKCY-GEPGFNSLFNKCI 523
               P +I TD    +  AI  V P  +H    W+IL+  +  LS  +   P F S F+KC+
Sbjct:   357 HPPVSITTDHDAVIRAAIMHVFPGARHRFCKWHILKKCQEKLSHVFLKHPSFESDFHKCV 416

Query:   524 FDCESEAEFESMWESLLEQYELCANPWLKTQYMLRRKWAHCFCKSAFSAGIRSTQHCYDI 583
                ES  +FE  W SLL++YEL  + WL+  Y  RR+W   + +  F A +  T     I
Sbjct:   417 NLTESVEDFERCWFSLLDKYELRDHEWLQAIYSDRRQWVPVYLRDTFFADMSLTHRSDSI 476

Query:   584 SHVFHSLTSKATTPLQFVQQYFKVAEQQRREELYEDFRCNGSAPPTILRSNAIEKEAAKI 643
             +  F    + +T   QF + Y K  E +  +E+  D+    S PP +   + +EK+A+++
Sbjct:   477 NSYFDGYINASTNLSQFFKLYEKALESRLEKEVKADYDTMNS-PPVLKTPSPMEKQASEL 535

Query:   644 YSCTMFKLFRAELLECLSVAIEEIQGDGMTAKFRLNEEGQK-KEKIVEFNCVETHLTCSC 702
             Y+  +F  F+ EL+  L+    +   DG    +++ + G+  K   V+FN +E    CSC
Sbjct:   536 YTRKLFMRFQEELVGTLTFMASKADDDGDLVTYQVAKYGEAHKAHFVKFNVLEMRANCSC 595

Query:   703 KKYESVGILCVHALKVLNAKNIFHIPPQYILKRWTKSAKDGMVVNGHEGEVVDDSQRHLH 762
             + +E  GI+C H L V    N+  +PP YILKRWT++AK  ++ + +      +      
Sbjct:   596 QMFEFSGIICRHILAVFRVTNLLTLPPYYILKRWTRNAKSSVIFDDYNLHAYANYLESHT 655

Query:   763 LDESKLMHKALNVITKSLPFEGTRMIADDYLSIALKNIEDALRTKNI 809
             +  + L HKA N + ++    G  +   D   +AL   ++A +T ++
Sbjct:   656 VRYNTLRHKASNFVQEA----GKSLYTCDVAVVAL---QEAAKTVSL 695
GO:0005634 "nucleus" evidence=ISM
GO:0008270 "zinc ion binding" evidence=IEA
GO:0009639 "response to red or far red light" evidence=ISS
TAIR|locus:2082420 FRS7 "FAR1-related sequence 7" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2059304 FRS3 "FAR1-related sequence 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2144930 FRS12 "FAR1-related sequence 12" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2129665 FAR1 "FAR-RED IMPAIRED RESPONSE 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2014639 FRS4 "FAR1-related sequence 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2062606 FRS2 "FAR1-related sequence 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2035144 FRS6 "FAR1-related sequence 6" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2090394 FHY3 "far-red elongated hypocotyls 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2121003 FRS9 "FAR1-related sequence 9" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query973
PLN03097846 PLN03097, FHY3, Protein FAR-RED ELONGATED HYPOCOTY 3e-79
pfam0310190 pfam03101, FAR1, FAR1 DNA-binding domain 1e-28
pfam1055188 pfam10551, MULE, MULE transposase domain 5e-19
smart0057528 smart00575, ZnF_PMZ, plant mutator transposase zin 7e-06
pfam0443438 pfam04434, SWIM, SWIM zinc finger 4e-04
>gnl|CDD|178645 PLN03097, FHY3, Protein FAR-RED ELONGATED HYPOCOTYL 3; Provisional Back     alignment and domain information 
 Score =  275 bits (705), Expect = 3e-79
 Identities = 206/680 (30%), Positives = 321/680 (47%), Gaps = 65/680 (9%)

Query: 149 LPSFDTHIVSLESDGESLMSSE---SNGDEIQSQSTVNLRGEI-----PEVNSQNPEL-- 198
           LPS D      E +G   M SE    NGD ++  + V++  E+      ++NS   EL  
Sbjct: 7   LPSGDHDKEDEEPNGVDNMLSEVKLHNGD-MEIGNVVDVAEEVLSIDGGDMNSPTGELVE 65

Query: 199 -----------GMVFSSQEEAYMFYTTYAKRIGFSVRKAKVRR--LSNGAIRKRLFYCSR 245
                      GM F S  EAY FY  YA+ +GF+      RR   S   I  + F CSR
Sbjct: 66  FKEDTNLEPLSGMEFESHGEAYSFYQEYARSMGFNTAIQNSRRSKTSREFIDAK-FACSR 124

Query: 246 QGF-------------RAKKQSTKATKYQRKETRTGCDAMVEFTVE-NGKWMISGFTPEH 291
            G              R  KQ  +    +R   +T C A +      +GKW+I  F  EH
Sbjct: 125 YGTKREYDKSFNRPRARQTKQDPENGTGRRSCAKTDCKASMHVKRRPDGKWVIHSFVKEH 184

Query: 292 NHDLEGKSKPVVGSSTKVSEDHSISTTMNKAATVKEAQPLNSVGFQGINCPGIPCDE-KT 350
           NH+L          +  VSE    +  M  A   + A+  N VG +  N      D+ + 
Sbjct: 185 NHELL--------PAQAVSEQ---TRKMYAAMARQFAEYKNVVGLK--NDSKSSFDKGRN 231

Query: 351 SCPKLLDGQSLIKYFRRLEMEAPSFSYTVQVNAENCLTGFFWTDGRSRIDYDYFGDVVIL 410
              +  D + L+ +F +++    +F Y V +  +  L   FW D +SR DY  F DVV  
Sbjct: 232 LGLEAGDTKILLDFFTQMQNMNSNFFYAVDLGEDQRLKNLFWVDAKSRHDYGNFSDVVSF 291

Query: 411 DTTFRIEANNMIYAPFLGLNHHRQYVLFGGAFLLDDSKDSFIWLLRTFLDSMGRRQPSTI 470
           DTT+      M  A F+G+N H Q++L G A + D+S  ++ WL++T+L +MG + P  I
Sbjct: 292 DTTYVRNKYKMPLALFVGVNQHYQFMLLGCALISDESAATYSWLMQTWLRAMGGQAPKVI 351

Query: 471 FTDGYQAMADAIKMVLPKTQHLLGIWYILRNAKANLSKCYGEPG-FNSLFNKCIFDCESE 529
            TD  +AM   I  V P   H   +W+IL     NL +   +   F + F KCI+   +E
Sbjct: 352 ITDQDKAMKSVISEVFPNAHHCFFLWHILGKVSENLGQVIKQHENFMAKFEKCIYRSWTE 411

Query: 530 AEFESMWESLLEQYELCANPWLKTQYMLRRKWAHCFCKSAFSAGIRSTQHCYDISHVFHS 589
            EF   W  +L+++EL  + W+++ Y  R++W   + + AF AG+ + Q    I+  F  
Sbjct: 412 EEFGKRWWKILDRFELKEDEWMQSLYEDRKQWVPTYMRDAFLAGMSTVQRSESINAFFDK 471

Query: 590 LTSKATTPLQFVQQYFKVAEQQRREELYEDFRCNGSAPPTILRSNAIEKEAAKIYSCTMF 649
              K TT  +FV+QY  + + +  EE   D     +  P +   + +EK  + +Y+  +F
Sbjct: 472 YVHKKTTVQEFVKQYETILQDRYEEEAKADSD-TWNKQPALKSPSPLEKSVSGVYTHAVF 530

Query: 650 KLFRAELLECLSVAIEEIQGDGMTAKFRLNEEGQKKEKIVEFNCVETHLTCSCKKYESVG 709
           K F+ E+L  ++   +    D  +  FR+ +  + ++  V +N  +  ++C C+ +E  G
Sbjct: 531 KKFQVEVLGAVACHPKMESQDETSITFRVQDFEKNQDFTVTWNQTKLEVSCICRLFEYKG 590

Query: 710 ILCVHALKVLNAKNIFHIPPQYILKRWTKSAKDGMVVNGHEGEVV--------DDSQRHL 761
            LC HAL VL    +  IP QYILKRWTK AK   ++ G E E V        D  QR L
Sbjct: 591 YLCRHALVVLQMCQLSAIPSQYILKRWTKDAKSRHLL-GEESEQVQSRVQRYNDLCQRAL 649

Query: 762 HL-DESKLMHKALNVITKSL 780
            L +E+ L  ++ N+  ++L
Sbjct: 650 KLSEEASLSQESYNIAFRAL 669

Length = 846
>gnl|CDD|217369 pfam03101, FAR1, FAR1 DNA-binding domain Back     alignment and domain information
>gnl|CDD|220806 pfam10551, MULE, MULE transposase domain Back     alignment and domain information
>gnl|CDD|128845 smart00575, ZnF_PMZ, plant mutator transposase zinc finger Back     alignment and domain information
>gnl|CDD|218087 pfam04434, SWIM, SWIM zinc finger Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 973
PLN03097846 FHY3 Protein FAR-RED ELONGATED HYPOCOTYL 3; Provis 100.0
PF1055193 MULE: MULE transposase domain; InterPro: IPR018289 99.83
PF0310191 FAR1: FAR1 DNA-binding domain; InterPro: IPR004330 99.76
PF00872381 Transposase_mut: Transposase, Mutator family; Inte 99.48
PF08731111 AFT: Transcription factor AFT; InterPro: IPR014842 98.89
COG3328379 Transposase and inactivated derivatives [DNA repli 98.55
smart0057528 ZnF_PMZ plant mutator transposase zinc finger. 98.51
PF0310867 DBD_Tnp_Mut: MuDR family transposase; InterPro: IP 98.15
PF0443440 SWIM: SWIM zinc finger; InterPro: IPR007527 Zinc f 97.81
PF01610249 DDE_Tnp_ISL3: Transposase; InterPro: IPR002560 Aut 96.3
PF0310660 WRKY: WRKY DNA -binding domain; InterPro: IPR00365 91.53
PF13610140 DDE_Tnp_IS240: DDE domain 91.48
PF00665120 rve: Integrase core domain; InterPro: IPR001584 In 87.57
>PLN03097 FHY3 Protein FAR-RED ELONGATED HYPOCOTYL 3; Provisional Back     alignment and domain information 
Probab=100.00  E-value=4.3e-130  Score=1182.35  Aligned_cols=588  Identities=29%  Similarity=0.517  Sum_probs=522.4

Q ss_pred             CCCCCCCCeeCCHHHHHHHHHHHhhhcCeEEEEeeeeecC-CCceEEEEEEeccCCcccccccc-------------ccc
Q 002062          193 SQNPELGMVFSSQEEAYMFYTTYAKRIGFSVRKAKVRRLS-NGAIRKRLFYCSRQGFRAKKQST-------------KAT  258 (973)
Q Consensus       193 ~~~P~vGm~F~S~eeA~~fyn~YA~~~GFsIRk~~s~r~~-~g~i~~~~fvCsreG~~~~~~~~-------------~~~  258 (973)
                      ..+|++||+|+|+|||++||+.||+++||+||+.+++|++ ++.++.++|+|+|+|+++++...             ...
T Consensus        71 ~~~P~vGMeF~S~eeA~~FYn~YA~~~GFsVRi~~srrsk~~~~ii~r~fvCsreG~~~~~~~~~~~~~~~~~k~~~~~~  150 (846)
T PLN03097         71 NLEPLSGMEFESHGEAYSFYQEYARSMGFNTAIQNSRRSKTSREFIDAKFACSRYGTKREYDKSFNRPRARQTKQDPENG  150 (846)
T ss_pred             CccCcCCCeECCHHHHHHHHHHHHhhcCceEEeeceeccCCCCcEEEEEEEEcCCCCCcccccccccccccccccCcccc
Confidence            4689999999999999999999999999999999998877 78899999999999987643110             001


Q ss_pred             cccccccccCCcceEEEEEe-cceEEEEEeecCCCCCCCCCCCCcccCCCCccccchhhhhhhccccccccccccccCcc
Q 002062          259 KYQRKETRTGCDAMVEFTVE-NGKWMISGFTPEHNHDLEGKSKPVVGSSTKVSEDHSISTTMNKAATVKEAQPLNSVGFQ  337 (973)
Q Consensus       259 kr~r~stRtgCpA~m~vk~~-~gkW~V~~f~~eHNH~L~~~~~~~~l~s~R~s~~q~ii~~l~~~~~~~~i~~~~~~g~~  337 (973)
                      +++|+.+||||||+|+|++. +|+|+|+.|+++|||+|.++..... +.++      +...+..     .+     .+..
T Consensus       151 ~~rR~~tRtGC~A~m~Vk~~~~gkW~V~~fv~eHNH~L~p~~~~~~-~~r~------~~~~~~~-----~~-----~~~~  213 (846)
T PLN03097        151 TGRRSCAKTDCKASMHVKRRPDGKWVIHSFVKEHNHELLPAQAVSE-QTRK------MYAAMAR-----QF-----AEYK  213 (846)
T ss_pred             cccccccCCCCceEEEEEEcCCCeEEEEEEecCCCCCCCCccccch-hhhh------hHHHHHh-----hh-----hccc
Confidence            23566799999999999998 9999999999999999997653221 1000      1111110     00     0111


Q ss_pred             CccCCCCCcccc-----ccCCCcccHHHHHHHHHHHHhcCCCCeeEEeeccCCceeEEEEccCcchhhhhhcCcEEEEee
Q 002062          338 GINCPGIPCDEK-----TSCPKLLDGQSLIKYFRRLEMEAPSFSYTVQVNAENCLTGFFWTDGRSRIDYDYFGDVVILDT  412 (973)
Q Consensus       338 ~~~~~~~d~~N~-----~~~l~~gD~~~Ll~yl~~~q~~nP~F~y~vq~De~~~l~~iFwad~~s~~~y~~FgDVV~~Dt  412 (973)
                      .+..+..+..|.     +..+..||+++||+||+++|.+||+|||++|+|++++|+||||+|++|+.+|.+|||||+|||
T Consensus       214 ~v~~~~~d~~~~~~~~r~~~~~~gD~~~ll~yf~~~q~~nP~Ffy~~qlDe~~~l~niFWaD~~sr~~Y~~FGDvV~fDT  293 (846)
T PLN03097        214 NVVGLKNDSKSSFDKGRNLGLEAGDTKILLDFFTQMQNMNSNFFYAVDLGEDQRLKNLFWVDAKSRHDYGNFSDVVSFDT  293 (846)
T ss_pred             cccccchhhcchhhHHHhhhcccchHHHHHHHHHHHHhhCCCceEEEEEccCCCeeeEEeccHHHHHHHHhcCCEEEEec
Confidence            222233333333     345788999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeeeccCCccccceeeeecCcceeEEEEEEecCCchhhHHHHHHHHHhhhCCCCCcEEecCCchHHHHHHHhhCCCCccc
Q 002062          413 TFRIEANNMIYAPFLGLNHHRQYVLFGGAFLLDDSKDSFIWLLRTFLDSMGRRQPSTIFTDGYQAMADAIKMVLPKTQHL  492 (973)
Q Consensus       413 Ty~tNky~~pL~~fvGvn~~gq~~~fg~ALl~dEt~esf~Wlf~~fl~~m~~~~P~tIITD~d~am~~AI~~VFP~t~H~  492 (973)
                      ||+||+|+|||++|+|||||+|+++||||||.+|+.+||.|||++|+++|+|++|++||||+|.+|++||++|||+|.|+
T Consensus       294 TY~tN~y~~Pfa~FvGvNhH~qtvlfGcaLl~dEt~eSf~WLf~tfl~aM~gk~P~tIiTDqd~am~~AI~~VfP~t~Hr  373 (846)
T PLN03097        294 TYVRNKYKMPLALFVGVNQHYQFMLLGCALISDESAATYSWLMQTWLRAMGGQAPKVIITDQDKAMKSVISEVFPNAHHC  373 (846)
T ss_pred             eeeccccCcEEEEEEEecCCCCeEEEEEEEcccCchhhHHHHHHHHHHHhCCCCCceEEecCCHHHHHHHHHHCCCceeh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chHHHHHHHHHhhccc-CCCCchHHHHHhhhhccccCHHHHHHHHHHHHHHhhhccchHHHHhhhccccccccccccccC
Q 002062          493 LGIWYILRNAKANLSK-CYGEPGFNSLFNKCIFDCESEAEFESMWESLLEQYELCANPWLKTQYMLRRKWAHCFCKSAFS  571 (973)
Q Consensus       493 lC~wHI~kn~~kkl~~-~~~~~~f~~~f~k~v~~s~t~eeFe~~W~~l~~ky~l~~n~wL~~ly~~rekWa~ay~k~~f~  571 (973)
                      +|+|||++|+.++|+. +...+.|..+|.+||+++++++|||..|..|+++|+|++|+||+.||+.|++||++|+++.|+
T Consensus       374 ~C~wHI~~~~~e~L~~~~~~~~~f~~~f~~cv~~s~t~eEFE~~W~~mi~ky~L~~n~WL~~LY~~RekWapaY~k~~F~  453 (846)
T PLN03097        374 FFLWHILGKVSENLGQVIKQHENFMAKFEKCIYRSWTEEEFGKRWWKILDRFELKEDEWMQSLYEDRKQWVPTYMRDAFL  453 (846)
T ss_pred             hhHHHHHHHHHHHhhHHhhhhhHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhcccccHHHHHHHHhHhhhhHHHhccccc
Confidence            9999999999999999 777899999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCccccccccccccccccccCCCCChHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCccccCcHHHHHHHHHhcHHHHHH
Q 002062          572 AGIRSTQHCYDISHVFHSLTSKATTPLQFVQQYFKVAEQQRREELYEDFRCNGSAPPTILRSNAIEKEAAKIYSCTMFKL  651 (973)
Q Consensus       572 ~g~~TT~rsES~N~~lK~~v~~~tsL~~F~~~~~~~l~~~r~kE~~ad~~s~~~~p~~~~t~~piEkqaa~vYT~~iFkk  651 (973)
                      +||.||+|+||+|++||+||+++++|.+|+++|+++++.++++|+++|+.+.++.|.+. +.+|||+||+++|||+||++
T Consensus       454 agm~sTqRSES~Ns~fk~yv~~~tsL~~Fv~qye~~l~~~~ekE~~aD~~s~~~~P~l~-t~~piEkQAs~iYT~~iF~k  532 (846)
T PLN03097        454 AGMSTVQRSESINAFFDKYVHKKTTVQEFVKQYETILQDRYEEEAKADSDTWNKQPALK-SPSPLEKSVSGVYTHAVFKK  532 (846)
T ss_pred             CCcccccccccHHHHHHHHhCcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCcccc-cccHHHHHHHHHhHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999775 68999999999999999999


Q ss_pred             HHHHHHHhhcceEEEEecCCceeEEEEEEeCCeeeEEEEEecCCCeeEeeecCccccCCccchhhhhhhccCCccCCcch
Q 002062          652 FRAELLECLSVAIEEIQGDGMTAKFRLNEEGQKKEKIVEFNCVETHLTCSCKKYESVGILCVHALKVLNAKNIFHIPPQY  731 (973)
Q Consensus       652 Fq~El~~~~~~~~~e~~~dg~i~~y~V~~~~~~k~~~V~~d~~~~~~sCSC~~Fe~~GIPCrHaL~VL~~~~v~~IP~~Y  731 (973)
                      ||+|+..+..+.+.+...+|.+.+|.|...+..+.|.|.+|...+.++|+|++||+.||||+|||+||.++||.+||++|
T Consensus       533 FQ~El~~~~~~~~~~~~~dg~~~~y~V~~~~~~~~~~V~~d~~~~~v~CsC~kFE~~GILCrHaLkVL~~~~v~~IP~~Y  612 (846)
T PLN03097        533 FQVEVLGAVACHPKMESQDETSITFRVQDFEKNQDFTVTWNQTKLEVSCICRLFEYKGYLCRHALVVLQMCQLSAIPSQY  612 (846)
T ss_pred             HHHHHHHhhheEEeeeccCCceEEEEEEEecCCCcEEEEEecCCCeEEeeccCeecCccchhhHHHHHhhcCcccCchhh
Confidence            99999998888777766678889999988766788999999999999999999999999999999999999999999999


Q ss_pred             hHHhhhhhhhcCCcccCCCCccccccccchhHHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHHHHHH
Q 002062          732 ILKRWTKSAKDGMVVNGHEGEVVDDSQRHLHLDESKLMHKALNVITKSLPFEGTRMIADDYLSIALKNIEDA  803 (973)
Q Consensus       732 ILkRWTk~ak~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~a~~l~~kas~s~e~~~~a~~~l~~~~~~le~~  803 (973)
                      ||+||||+||...+. +...    ........+++.||+.|++++.+|+.|+|+|++|+++|+++.++++.|
T Consensus       613 ILkRWTKdAK~~~~~-~~~~----~~~~~~~~Ryn~L~r~a~kla~~as~S~E~y~~a~~~L~e~~~~~~~~  679 (846)
T PLN03097        613 ILKRWTKDAKSRHLL-GEES----EQVQSRVQRYNDLCQRALKLSEEASLSQESYNIAFRALEEAFGNCISM  679 (846)
T ss_pred             hhhhchhhhhhcccC-cccc----ccccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999987775 3221    112334455568999999999999999999999999999999999853

>PF10551 MULE: MULE transposase domain; InterPro: IPR018289 This entry represents a domain found in Mutator-like elements (MULE)-encoded tranposases, some of which also contain a zinc-finger motif [, ] Back     alignment and domain information
>PF03101 FAR1: FAR1 DNA-binding domain; InterPro: IPR004330 Phytochrome A is the primary photoreceptor for mediating various far-red light-induced responses in higher plants Back     alignment and domain information
>PF00872 Transposase_mut: Transposase, Mutator family; InterPro: IPR001207 Autonomous mobile genetic elements such as transposon or insertion sequences (IS) encode an enzyme, transposase, that is required for excising and inserting the mobile element Back     alignment and domain information
>PF08731 AFT: Transcription factor AFT; InterPro: IPR014842 AFT (activator of iron transcription) is an iron regulated transcriptional activator that regulates the expression of genes involved in iron homeostasis Back     alignment and domain information
>COG3328 Transposase and inactivated derivatives [DNA replication, recombination, and repair] Back     alignment and domain information
>smart00575 ZnF_PMZ plant mutator transposase zinc finger Back     alignment and domain information
>PF03108 DBD_Tnp_Mut: MuDR family transposase; InterPro: IPR004332 The plant MuDR transposase domain is present in plant proteins that are presumed to be the transposases for Mutator transposable elements [, ] Back     alignment and domain information
>PF04434 SWIM: SWIM zinc finger; InterPro: IPR007527 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>PF01610 DDE_Tnp_ISL3: Transposase; InterPro: IPR002560 Autonomous mobile genetic elements such as transposon or insertion sequences (IS) encode an enzyme, transposase, that is required for excising and inserting the mobile element Back     alignment and domain information
>PF03106 WRKY: WRKY DNA -binding domain; InterPro: IPR003657 The WRKY domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger- like motif Back     alignment and domain information
>PF13610 DDE_Tnp_IS240: DDE domain Back     alignment and domain information
>PF00665 rve: Integrase core domain; InterPro: IPR001584 Integrase comprises three domains capable of folding independently and whose three-dimensional structures are known Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query973
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-12
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-07
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 68.7 bits (167), Expect = 8e-12
 Identities = 83/520 (15%), Positives = 153/520 (29%), Gaps = 153/520 (29%)

Query: 397 SRIDYDYFGDVV---------------ILDTTFRI----EANNMIYAPFLGLNHHRQYVL 437
               Y Y  D++               + D    I    E +++I +            L
Sbjct: 12  GEHQYQY-KDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKD---AVSGTLRL 67

Query: 438 FG----------GAFLLDDSKDSFIWLLRTFLDSMGRRQPSTIFTDGYQAMADAI----- 482
           F             F+ +  + ++ +L+        +RQPS + T  Y    D +     
Sbjct: 68  FWTLLSKQEEMVQKFVEEVLRINYKFLMSPI--KTEQRQPSMM-TRMYIEQRDRLYNDNQ 124

Query: 483 ---KMVLPKTQHLLGIWYILRNAKANLSK-----CYGEPGF---------------NSLF 519
              K  + + Q  L     LR A   L         G  G                    
Sbjct: 125 VFAKYNVSRLQPYLK----LRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKM 180

Query: 520 NKCIF-----DCESEAEFESMWESLLEQYE--LCANPWLKTQYMLRRKWAHCFCKSAFSA 572
           +  IF     +C S      M + LL Q +    +     +   LR        ++    
Sbjct: 181 DFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSI----QAELRR 236

Query: 573 GIRSTQH--CYDI-SHVFHSLTSKA---------TTPLQFVQQYFKVAEQ---QRREELY 617
            ++S  +  C  +  +V ++    A         TT      ++ +V +         + 
Sbjct: 237 LLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTT------RFKQVTDFLSAATTTHIS 290

Query: 618 EDFRCNGSAPPTILRSNAIEKEA--AKIYSCTMFKLFRAELLEC--LSVAI--EEIQGDG 671
            D       P         E ++   K   C    L   E+L      ++I  E I+   
Sbjct: 291 LDHHSMTLTPD--------EVKSLLLKYLDCRPQDL-PREVLTTNPRRLSIIAESIRDGL 341

Query: 672 MTAKFRLNEEGQKKEKIVEFNCVETHLTCSCKK--YESVGILCVHALKVLNAKNIFHIPP 729
            T     +    K   I+E + +   L  +  +  ++ + +            +  HIP 
Sbjct: 342 ATWDNWKHVNCDKLTTIIE-SSLN-VLEPAEYRKMFDRLSVF---------PPSA-HIPT 389

Query: 730 QYILKRWTKSAKD--GMVVNG-HEGEVVD----DSQRHLH---------LDESKLMHKAL 773
             +   W    K    +VVN  H+  +V+    +S   +          L+    +H+++
Sbjct: 390 ILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSI 449

Query: 774 ----NVITKSLPFEGTRMIADDYLS--IA--LKNIEDALR 805
               N+       +      D Y    I   LKNIE   R
Sbjct: 450 VDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPER 489
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query973
2ayd_A76 WRKY transcription factor 1; beta strands, zinc fi 91.83
1wj2_A78 Probable WRKY transcription factor 4; DNA-binding 90.42
>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana} Back     alignment and structure
Probab=91.83  E-value=0.48  Score=41.19  Aligned_cols=30  Identities=23%  Similarity=0.553  Sum_probs=26.0

Q ss_pred             cCCcceEEEEEe--cceEEEEEeecCCCCCCC
Q 002062          267 TGCDAMVEFTVE--NGKWMISGFTPEHNHDLE  296 (973)
Q Consensus       267 tgCpA~m~vk~~--~gkW~V~~f~~eHNH~L~  296 (973)
                      .||||+=.|.+.  +....++.+..+|||++.
T Consensus        43 ~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p   74 (76)
T 2ayd_A           43 PGCPVKKHVERSSHDTKLLITTYEGKHDHDMP   74 (76)
T ss_dssp             TTCCCEEEEEECSSSTTEEEEEEESCCSSCCC
T ss_pred             CCCCceeeEEEECCCCCEEEEEEccCcCCCCC
Confidence            379999999987  667889999999999873
>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query973
d1wj2a_71 WRKY DNA-binding protein 4 {Thale cress (Arabidops 92.38
>d1wj2a_ g.79.1.1 (A:) WRKY DNA-binding protein 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
class: Small proteins
fold: WRKY DNA-binding domain
superfamily: WRKY DNA-binding domain
family: WRKY DNA-binding domain
domain: WRKY DNA-binding protein 4
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=92.38  E-value=0.085  Score=43.16  Aligned_cols=29  Identities=28%  Similarity=0.550  Sum_probs=25.1

Q ss_pred             cCCcceEEEEEe--cceEEEEEeecCCCCCC
Q 002062          267 TGCDAMVEFTVE--NGKWMISGFTPEHNHDL  295 (973)
Q Consensus       267 tgCpA~m~vk~~--~gkW~V~~f~~eHNH~L  295 (973)
                      .||+|+=.|.+.  ++.-.++.+..+|||++
T Consensus        39 ~~C~a~K~Vqr~~~d~~~~~vtY~G~H~h~~   69 (71)
T d1wj2a_          39 PGCGVRKHVERAATDPKAVVTTYEGKHNHDL   69 (71)
T ss_dssp             SSCEEEEEEEEETTTTSEEEEEEESCCSSCC
T ss_pred             cCCCCcceEEEEcCCCCEEEEEEeeEeCCCC
Confidence            369999999987  67788888999999986