Citrus Sinensis ID: 002082

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-

MIKMQEYSNGGGGDDGGGGGGPADLAKLQSIMHSIEIACSSIQMHVNPAAAEATILGLCQSPQPYKACQFILENSQVANARFQAAAAIRDAAMREWSFLTADEKKSLIGFCLCFVMQHASSPEGYVQAKISSVAAQLMKRGWLDFTSSDKEAFFSQVHQAVLGIHGVDTQFIGINFLESLVSEFSPSTSSAMGLPREFHEQCRISLELDYLKTFYCWARDAALSVTKQIIESDAAASEVKACTAALRLLHQILNWDFQFDTSGRKISINVFSAGVRTETSSSKRSECIIVQPGPAWCDALISSGHIVWLLNLYSALRQKFSSEGYWLDCPIAVSARKLIVQLCSLTGTVFPSDNGKMQEHHLLQLLSGILEWVDPPDVVAQAIESGKSESEMLDGCRALLSIATVTTPFVFDRLLKSIRPFGTLTLLSNLMCEVVKVLMMNNTEEGTWSWEARDILLDTWTTLLVSLDSTGRNVVLPLEVRNAAASLFALIVESELKVASASAMDDNGEFNYLQASISAMDERLSSYALIARAAIDATVPLLTRLFSERFARLHQGRGMIDPTETLEELYSLLLITGHVLADEGEGEIPVVPNAIQTHFVDTIEAAKHPVVLLCGSIIKFAEWSLDPEARASVFSPRLMEAIVWFLARWSQTYLMPLEEFRDSSTNLCHDTGYQHQSSTSRKALLSFFGEHNQGKPVLDIIVRISMTTLVSYPGEKDLQELTCNQLLHALVRRKNVCVHLVALGSWRELASAFANDKTLILLNSTNQRSLAQTLVLSAYGMRNSESSNQYVRDLTRHATAYLVELSGKNDLKNVSQQPDIILLVSCLLERLRGAANATEPRTQKAIYEMGFSVMNPVLLLLEVYKHESAVVYLLLKFVVDWVDGQISYLEVQETNIVIDFCTRLLQLYSSHNIGKMLMTQSSCLLGEAKTEKYKDLRALFQLLSNLCSKDLVGLSSTCIHTIERKILLSVC

cccccccccccccccccccccccHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHccccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHcccccccccccccccccccccccccHHHHHHcccHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHcccccHHHHHHHHHHHHHHHHcHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHccHHHHHHHHHHHHHHHcccccHHcccccHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHHHccccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHccHHHHHHHccHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHcHHHccccccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccHHcHHHHHHHHHcc

ccEEEEEccccccccccccccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHcccccccccccccccEcHccccccccccccccccccEEcccHHHHHHHcccHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHccccccHHHHHcccccHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHccccHccEccccccccccHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHccHHHHHHcccHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHEEcccHHHccccccccccccccccccHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcccHHHEEEccHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHcccHHHHcccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHcccccEEEcccccccHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHcc

mikmqeysnggggddggggggpaDLAKLQSIMHSIEIACSSIQMHVNPAAAEATILglcqspqpykaCQFILENSQVANARFQAAAAIRDAAMREWSFLTADEKKSLIGFCLCFVMqhasspegyVQAKISSVAAQLMKRgwldftssdkeAFFSQVHQAVLGIHGVDTQFIGINFLESLvsefspstssamglprefHEQCRISLELDYLKTFYCWARDAALSVTKQIIESDAAASEVKACTAALRLLHQILNWdfqfdtsgrkiSINVFSAgvrtetssskrseciivqpgpawcDALISSGHIVWLLNLYSALRQKfssegywldcpiAVSARKLIVQLCSltgtvfpsdngkmqEHHLLQLLSGilewvdppdVVAQAIESGKSESEMLDGCRALLSIATVTTPFVFDRLLksirpfgtltLLSNLMCEVVKVLMMNnteegtwswEARDILLDTWTTLLVSLDstgrnvvlpLEVRNAAASLFALIVESELKVAsasamddngefnYLQASISAMDERLSSYALIARAAIDATVPLLTRLFSERFARLhqgrgmidpteTLEELYSLLLITGhvladegegeipvvpnaiQTHFVDTIEAAKHPVVLLCGSIIKFaewsldpearasvfsPRLMEAIVWFLARWSQTylmpleefrdsstnlchdtgyqhqssTSRKALLSFFgehnqgkpvlDIIVRISMTtlvsypgekdlqELTCNQLLHALVRRKNVCVHLVALGSWRELASAFANDKTLILLNSTNQRSLAQTLVLSAYgmrnsessnqYVRDLTRHATAYLVELSgkndlknvsqqpdIILLVSCLLERLrgaanateprtQKAIYEMGFSVMNPVLLLLEVYKHESAVVYLLLKFVVDWVDGQISYLEVQETNIVIDFCTRLLQLYSSHNIGKMLMtqsscllgeaktEKYKDLRALFQLLSNLCskdlvglsstCIHTIERKILLSVC

mikmqeysnggggddgggGGGPADLAKLQSIMHSIEIACSSIQMHVNPAAAEATILGLCQSPQPYKACQFILENSQVANARFQAAAAIRDAAMREWSFLTADEKKSLIGFCLCFVMQHASSPEGYVQAKISSVAAQLMKRGWLDFTSSDKEAFFSQVHQAVLGIHGVDTQFIGINFLESLVSEFSPSTSSAMGLPREFHEQCRISLELDYLKTFYCWARDAALSVTKQIIESDAAASEVKACTAALRLLHQILNWDFQFDTSGRKISINVFSAGvrtetssskrsecIIVQPGPAWCDALISSGHIVWLLNLYSALRQKFSSEGYWLDCPIAVSARKLIVQLCSLTGTVFPSDNGKMQEHHLLQLLSGILEWVDPPDVVAQAIESGKSESEMLDGCRALLSIATVTTPFVFDRLLKSIRPFGTLTLLSNLMCEVVKVLMMNNTEEGTWSWEARDILLDTWTTLLVSLDSTGRNVVLPLEVRNAAASLFALIVESELKVASASAMDDNGEFNYLQASISAMDERLSSYALIARAAIDATVPLLTRLFSERFARLHQGRGMIDPTETLEELYSLLLITGHVLADEGEGEIPVVPNAIQTHFVDTIEAAKHPVVLLCGSIIKFAEWSLDPEARASVFSPRLMEAIVWFLARWSQTYLMPLEEFRDSSTNLCHDTGYQHQSSTSRKALLSFFGEHNQGKPVLDIIVRISMTTLVSYPGEKDLQELTCNQLLHALVRRKNVCVHLVALGSWRELASAFANDKTLILLNSTNQRSLAQTLVLSAYGMRNSESSNQYVRDLTRHATAYLVELSgkndlknvsqQPDIILLVSCLLERLRgaanateprtqKAIYEMGFSVMNPVLLLLEVYKHESAVVYLLLKFVVDWVDGQISYLEVQETNIVIDFCTRLLQLYSSHNIGKMLMTQSSCLLGEAKTEKYKDLRALFQLLSNLCSKDLVGLSstcihtierkillsvc

MIKMQEYSNggggddggggggPADLAKLQSIMHSIEIACSSIQMHVNPAAAEATILGLCQSPQPYKACQFILENSQVanarfqaaaairdaamrEWSFLTADEKKSLIGFCLCFVMQHASSPEGYVQAKISSVAAQLMKRGWLDFTSSDKEAFFSQVHQAVLGIHGVDTQFIGINFLESLVSEFSPSTSSAMGLPREFHEQCRISLELDYLKTFYCWARDAALSVTKQIIESDAAASEVKACTAALRLLHQILNWDFQFDTSGRKISINVFSAGVRTETSSSKRSECIIVQPGPAWCDALISSGHIVWLLNLYSALRQKFSSEGYWLDCPIAVSARKLIVQLCSLTGTVFPSDNGKMQEHHLLQLLSGILEWVDPPDVVAQAIESGKSESEMLDGCRALLSIATVTTPFVFDRLLKSIRPFGTLTLLSNLMCEVVKVLMMNNTEEGTWSWEARDILLDTWTTLLVSLDSTGRNVVLPLEVRNAAASLFALIVESELKVASASAMDDNGEFNYLQASISAMDERLSSYALIARAAIDATVPLLTRLFSERFARLHQGRGMIDPtetleelyslllitGHVLADEGEGEIPVVPNAIQTHFVDTIEAAKHPVVLLCGSIIKFAEWSLDPEARASVFSPRLMEAIVWFLARWSQTYLMPLEEFRDSSTNLCHDTGYQHQSSTSRKALLSFFGEHNQGKPVLDIIVRISMTTLVSYPGEKDLQELTCNQLLHALVRRKNVCVHLVALGSWRELASAFANDKTLILLNSTNQRSLAQTLVLSAYGMRNSESSNQYVRDLTRHATAYLVELSGKNDLKNVSQQPDIILLVSCLLERLRGAANATEPRTQKAIYEMGFSVMNPVLLLLEVYKHESAVVYLLLKFVVDWVDGQISYLEVQETNIVIDFCTRLLQLYSSHNIGKMLMTQSSCLLGEAKTEKYKDLRALFQLLSNLCSKDLVGLSSTCIHTIERKILLSVC

*****************************SIMHSIEIACSSIQMHVNPAAAEATILGLCQSPQPYKACQFILENSQVANARFQAAAAIRDAAMREWSFLTADEKKSLIGFCLCFVMQHASSPEGYVQAKISSVAAQLMKRGWLDFTSSDKEAFFSQVHQAVLGIHGVDTQFIGINFLESLVSEF*********LPREFHEQCRISLELDYLKTFYCWARDAALSVTKQIIESDAAASEVKACTAALRLLHQILNWDFQFDTSGRKISINVFSAGVR*********ECIIVQPGPAWCDALISSGHIVWLLNLYSALRQKFSSEGYWLDCPIAVSARKLIVQLCSLTGTVFPSDNGKMQEHHLLQLLSGILEWVDPPDVVAQAI********MLDGCRALLSIATVTTPFVFDRLLKSIRPFGTLTLLSNLMCEVVKVLMMNNTEEGTWSWEARDILLDTWTTLLVSLDSTGRNVVLPLEVRNAAASLFALIVESELKVASASAMDDNGEFNYLQASISAMDERLSSYALIARAAIDATVPLLTRLFSERFARLHQGRGMIDPTETLEELYSLLLITGHVLADEGEGEIPVVPNAIQTHFVDTIEAAKHPVVLLCGSIIKFAEWSLDPEARASVFSPRLMEAIVWFLARWSQTYLMPLEEFRDSSTNLCHDTGY********KALLSFFGEHNQGKPVLDIIVRISMTTLVSYPGEKDLQELTCNQLLHALVRRKNVCVHLVALGSWRELASAFANDKTLILLNSTNQRSLAQTLVLSAYGM*******QYVRDLTRHATAYLVELSGKNDLKNVSQQPDIILLVSCLLERLRGAANATEPRTQKAIYEMGFSVMNPVLLLLEVYKHESAVVYLLLKFVVDWVDGQISYLEVQETNIVIDFCTRLLQLYSSHNIGKMLMTQSSCLLGEAKTEKYKDLRALFQLLSNLCSKDLVGLSSTCIHTIERKILLS**

***************************LQSIMHSIEIACS***********EATILGLCQSPQPYKACQFILENSQVANARFQAAAAIRDAAMREWSFLTADEKKSLIGFCLCFVMQHASSPEGYVQAKISSVAAQLMKRGWLDFTSSDKEAFFSQVHQAVLGIHGVDTQFIGINFLESLVSEFSPSTSSAMGLPREFHEQCRISLELDYLKTFYCWARDAALSVTK**********EVKACTAALRLLHQILNWDFQFDTSGRKISINVFSAGVRTETSSSKRSECIIVQPGPAWCDALISSGHIVWLLNLYSALRQKFSSEGYWLDCPIAVSARKLIVQLCSLTGTVFPSDNGKMQEHHLLQLLSGILEWVDPPDVVAQAIESGKSESEMLDGCRALLSIATVTTPFVFDRLLKSIRPFGTLTLLSNLMCEVVKVLMMNNTEEGTWSWEARDILLDTWTTLLVSLDSTGRNVVLPLEVRNAAASLFALIVESELKVAS*******GEFNYLQASISAMDERLSSYALIARAAIDATVPLLTRLFSERFA************ETLEELYSLLLITGHVLADEGEGEIPVVPNAIQTHF***IEAAKHPVVLLCGSIIKFAEW*************RLMEAIVWFLARWSQTYLMPLEEFRDSST**********************FGEHNQGKPVLDIIVRISMTTLVSYPGEKDLQELTCNQLLHALVRRKNVCVHLVALGSWRELASAFANDKTLILLNSTNQRSLAQTLVLSAYGMRNSESSNQYVRDLTRHATAYLVELSGK**********DIILLVSCLLERLRGAANATEPRTQKAIYEMGFSVMNPVLLLLEVYKHESAVVYLLLKFVVDWVDGQISYLEVQETNIVIDFCTRLLQLYSSHNIG*************AKTEKYKDLRALFQLLSNLCSKDLVGLSSTCIHTIERKILLSVC

********NGGGGDDGGGGGGPADLAKLQSIMHSIEIACSSIQMHVNPAAAEATILGLCQSPQPYKACQFILENSQVANARFQAAAAIRDAAMREWSFLTADEKKSLIGFCLCFVMQHASSPEGYVQAKISSVAAQLMKRGWLDFTSSDKEAFFSQVHQAVLGIHGVDTQFIGINFLESLVSE*********GLPREFHEQCRISLELDYLKTFYCWARDAALSVTKQIIESDAAASEVKACTAALRLLHQILNWDFQFDTSGRKISINVFSAG**********SECIIVQPGPAWCDALISSGHIVWLLNLYSALRQKFSSEGYWLDCPIAVSARKLIVQLCSLTGTVFPSDNGKMQEHHLLQLLSGILEWVDPPDVVAQAIESGKSESEMLDGCRALLSIATVTTPFVFDRLLKSIRPFGTLTLLSNLMCEVVKVLMMNNTEEGTWSWEARDILLDTWTTLLVSLDSTGRNVVLPLEVRNAAASLFALIVESELKVASASAMDDNGEFNYLQASISAMDERLSSYALIARAAIDATVPLLTRLFSERFARLHQGRGMIDPTETLEELYSLLLITGHVLADEGEGEIPVVPNAIQTHFVDTIEAAKHPVVLLCGSIIKFAEWSLDPEARASVFSPRLMEAIVWFLARWSQTYLMPLEEFRDSSTNLCHDT*********RKALLSFFGEHNQGKPVLDIIVRISMTTLVSYPGEKDLQELTCNQLLHALVRRKNVCVHLVALGSWRELASAFANDKTLILLNSTNQRSLAQTLVLSAYGMRNSESSNQYVRDLTRHATAYLVELSGKNDLKNVSQQPDIILLVSCLLERLRGAANATEPRTQKAIYEMGFSVMNPVLLLLEVYKHESAVVYLLLKFVVDWVDGQISYLEVQETNIVIDFCTRLLQLYSSHNIGKMLMTQSSCLLGEAKTEKYKDLRALFQLLSNLCSKDLVGLSSTCIHTIERKILLSVC

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		971	2.2.26 [Sep-21-2011]
Q499Y0		1150	Exportin-4 OS=Xenopus lae	N/A	no	0.847	0.715	0.253	8e-62
Q9ESJ0		1151	Exportin-4 OS=Mus musculu	yes	no	0.878	0.741	0.254	2e-60
Q9C0E2		1151	Exportin-4 OS=Homo sapien	yes	no	0.878	0.741	0.253	2e-59
Q802D3		1150	Exportin-4 OS=Danio rerio	yes	no	0.880	0.743	0.244	2e-58
Q5ZMR9		1154	Exportin-4 OS=Gallus gall	yes	no	0.845	0.711	0.252	6e-58
Q54UP5		1133	Exportin-4 OS=Dictyosteli	yes	no	0.863	0.739	0.205	3e-25
Q569Z2		1087	Exportin-7-B OS=Xenopus l	N/A	no	0.304	0.272	0.214	1e-05
Q704U0		1087	Exportin-7-A OS=Xenopus l	N/A	no	0.309	0.276	0.197	0.0003

>sp\|Q499Y0\|XPO4_XENLA Exportin-4 OS=Xenopus laevis GN=xpo4 PE=2 SV=1	Back alignment and function desciption

 Score =  239 bits (610), Expect = 8e-62,   Method: Compositional matrix adjust.
 Identities = 248/980 (25%), Positives = 445/980 (45%), Gaps = 157/980 (16%)

Query: 51  AEATILGLCQSPQPYKACQFILENSQVANARFQAAAAIRDAAMREWSFLTADEKKSLIGF 110
           AE   L   +S  P+  C+ ILE S+V    FQAA AI +A +REW  L     +SL  F
Sbjct: 36  AEHVFLSFRKSKSPFAVCKHILETSKVDYVLFQAATAIMEAVVREWILLEKSSIESLRTF 95

Query: 111 CLCFVMQHASSPEGYVQAKISSVAAQLMKRGWLDFTSSDKEAFFSQVHQAVLGIHGVDTQ 170
            L +V+Q  +  + YV+ +I    A ++KRG LD  S D ++ F +V Q +   +    Q
Sbjct: 96  LLTYVLQRPNL-QKYVREQILLAVAVIVKRGSLD-KSIDCKSIFHEVSQLISSCNPT-MQ 152

Query: 171 FIGINFLESLVSEFSPST-SSAMGLPREFHEQCRISLELDYLKTFYCWARDAALSVTKQI 229
            +  + L +L+ EFS S+ +S +GL  EFH  C+   + + L+  +    +     +++ 
Sbjct: 153 TLACSILTALLIEFSSSSKTSNIGLSMEFHGSCKRVFQDEDLRRIFMLTIEVLQEFSRR- 211

Query: 230 IESDAAASEVKACTAALRLLHQILNWDFQFDTSGRKISINVFSAGVRTETSSSKRSECII 289
              +  A         L L +Q+L+W+F     GR   I +F +           S+ ++
Sbjct: 212 --ENLNAQMSSVFQRYLALANQVLSWNFLPPNLGRHY-IAMFES-----------SQNVM 257

Query: 290 VQPGPAWCDALISSGHIVWLLNLYSALRQKFSSEGYWLDCPIAVSARKLIVQLCSLTGTV 349
           ++P  +W + L++S  +     ++  +R+         D  +A  + + + QL SL G +
Sbjct: 258 LKPTESWRETLLNSRVMELFFTVHRKIRE---------DSDMAQDSLQCLAQLASLHGPI 308

Query: 350 FPSDNGKMQEHHLLQLLSGILEWVDPPDVVAQAIESGKSESEMLDGCRALLSIATVTTPF 409
           FP +  + Q  +L   + G+L  ++        IE   SE+  +        I+ + T  
Sbjct: 309 FPDE--RSQVDYLAHFIEGLLSTIN-------GIEIEDSEAVGISNI-----ISNLIT-- 352

Query: 410 VFDRLLKSIRP---FGT-LTLLSNLMCEVVKVLMMNNT--EEGTWSWEARDILLDTWTTL 463
           VF R + +  P   F + +  L++L C   +   +     ++     EA D LL++W TL
Sbjct: 353 VFPRNILTAIPSDLFSSFVNCLTHLTCSFGRSAALEEVLDKDDMVYMEAYDKLLESWLTL 412

Query: 464 LVSLDSTGR-----------------NVVLPLEVRNAAASLFALIVESELKVASASAMDD 506
           +       +                 ++  P   RN  A+  A     E +  +    DD
Sbjct: 413 VQDDQHFHKGFFTQHAVQVFNSYIQCHLAAPDGTRNLTANGVA---SREEEEINEIQEDD 469

Query: 507 NGEFNYLQASISAMDERLSSYALIARAAIDATVPLLTRLFSERFARLH------------ 554
              F+          ++L+S  ++ R A D  +PLLT L  ER  RLH            
Sbjct: 470 RDLFS----------DQLASVGMLGRIASDHCIPLLTSLLEERVTRLHGQLQRHQQQLLA 519

Query: 555 -QGRGMIDPTETLEELYS----LLLITGHVLADEGEGEIPVVPNAI------QTHFVD-- 601
             G   ID  + L++LY     L+L+TG++LAD+ +GE P++P+ I      Q+  VD  
Sbjct: 520 SPGADSID-NKVLDDLYEDIHWLILVTGYLLADDTQGETPLIPSEIMEYSIKQSTEVDIN 578

Query: 602 -TIEAAKHP---------------VVLLCGSIIKFAEWSLDPEARAS------VFSPRLM 639
            T++    P               V+ L  ++++ +E     E+RA+      + SP++ 
Sbjct: 579 TTLQILGSPGEKASSIPGCNRTDSVIRLVSAVLRASEV----ESRATRADLTHLLSPQMG 634

Query: 640 EAIVWFLARWSQTYLMPLEEFRDSSTNLCHDTGYQHQSSTSRKALLSFFGEHNQG-KPVL 698
           + IVWFL RW++TYL+  E+  D   +L  +T                FG   +G   ++
Sbjct: 635 KDIVWFLKRWTKTYLLVDEKLYDQ-ISLPFNTA---------------FGADTEGCHWII 678

Query: 699 DIIVRISMTTLVSYPGEKDLQELTCNQLLHALVRRKNVCVHLVALGSWRELASAFAN-DK 757
             ++   ++ L  +  E++L   T  QLL  LV R+     ++   +W  LA  FA    
Sbjct: 679 GYLLEKVISNLSVWSSEQELANETV-QLLVTLVERRERANLVIQCENWWNLAKQFAQRSP 737

Query: 758 TLILLNSTNQRSLAQTLVLSAYGMRNSESSNQYVRDLTRHATAYLVELSGKNDLKNVSQQ 817
            L  L+S+ QR+L + LVL  +   +S++  QY  ++ +      + +  + + + + Q+
Sbjct: 738 PLNFLSSSVQRTLMKALVLGGFAHMDSDTKQQYWTEVLQPLQQRFLNVINQENFQQICQE 797

Query: 818 PDIILLVSCLLERLRGAANATEPRTQKAIYEMGFSVMNPVLLLLEVYKHESAVVYLLLKF 877
            ++   ++  LE L G A AT+      ++      +   + L+EVYK+    V L+++ 
Sbjct: 798 EEVKQEITATLEALCGIAEATQIDNVAILFNFLMDFLTNCIGLMEVYKNNPETVNLIIEV 857

Query: 878 VVDWVDGQISYLEVQETNIVIDFCTRLLQLYSSHNIGKMLMTQSSCLLGEAKTEKYKDLR 937
            V+    QI YL   +   + + C  LLQ+YS +N+G+  +  +      A+ ++Y+DL 
Sbjct: 858 FVEVAHKQICYLGESKAMNLYEACLTLLQVYSKNNLGRKRIDVT------AEEDQYQDLL 911

Query: 938 ALFQLLSNLCSKDLVGLSST 957
            + +LL+NL SK+ +  S T
Sbjct: 912 LIMELLTNLLSKEFIDFSDT 931

Mediates the nuclear export of proteins (cargos) with broad substrate specificity.
Xenopus laevis (taxid: 8355)

>sp\|Q9ESJ0\|XPO4_MOUSE Exportin-4 OS=Mus musculus GN=Xpo4 PE=1 SV=2	Back alignment and function description

>sp\|Q9C0E2\|XPO4_HUMAN Exportin-4 OS=Homo sapiens GN=XPO4 PE=1 SV=2	Back alignment and function description

>sp\|Q802D3\|XPO4_DANRE Exportin-4 OS=Danio rerio GN=xpo4 PE=2 SV=1	Back alignment and function description

>sp\|Q5ZMR9\|XPO4_CHICK Exportin-4 OS=Gallus gallus GN=XPO4 PE=2 SV=1	Back alignment and function description

>sp\|Q54UP5\|XPO4_DICDI Exportin-4 OS=Dictyostelium discoideum GN=xpo4 PE=3 SV=1	Back alignment and function description

>sp\|Q569Z2\|XPO7B_XENLA Exportin-7-B OS=Xenopus laevis GN=xpo7-b PE=2 SV=1	Back alignment and function description

>sp\|Q704U0\|XPO7A_XENLA Exportin-7-A OS=Xenopus laevis GN=xpo7-a PE=1 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		971
302143624		1176	unnamed protein product [Vitis vinifera]	0.963	0.795	0.763	0.0
255561939		1165	protein with unknown function [Ricinus c	0.954	0.795	0.756	0.0
359488084		1123	PREDICTED: exportin-4-like [Vitis vinife	0.918	0.794	0.716	0.0
297828948		1123	hypothetical protein ARALYDRAFT_317312 [	0.927	0.802	0.703	0.0
334185076		1118	uncharacterized protein [Arabidopsis tha	0.905	0.786	0.659	0.0
449449573		1121	PREDICTED: exportin-4-like [Cucumis sati	0.916	0.793	0.662	0.0
356504127		1117	PREDICTED: exportin-4-like [Glycine max]	0.864	0.751	0.697	0.0
356571192		1117	PREDICTED: exportin-4-like [Glycine max]	0.871	0.757	0.690	0.0
224145812		920	predicted protein [Populus trichocarpa]	0.738	0.779	0.649	0.0
242039377		1165	hypothetical protein SORBIDRAFT_01g01933	0.963	0.803	0.543	0.0

>gi\|302143624\|emb\|CBI22377.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

 Score = 1426 bits (3691), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 728/953 (76%), Positives = 812/953 (85%), Gaps = 17/953 (1%)

Query: 16  GGGGGGPADLAKLQSIMHSIEIACSSIQMHVNPAAAEATILGLCQSPQPYKACQFILENS 75
           G    GPADL +LQ+ M +IEIACSSIQMHVNPAAAEATIL LCQSPQPY+ACQFILENS
Sbjct: 12  GSSDRGPADLTQLQATMQAIEIACSSIQMHVNPAAAEATILSLCQSPQPYQACQFILENS 71

Query: 76  QVANARFQAAAAIRDAAMREWSFLTADEKKSLIGFCLCFVMQHASSPEGYVQAKISSVAA 135
           QVANARFQAAAAIRDAA+REW  LT+D+KKSLI FCLCFVMQHASSPEGYVQ+K+SSVAA
Sbjct: 72  QVANARFQAAAAIRDAAIREWGLLTSDDKKSLISFCLCFVMQHASSPEGYVQSKVSSVAA 131

Query: 136 QLMKRGWLDFTSSDKEAFFSQVHQAVLGIHGVDTQFIGINFLESLVSEFSPSTSSAMGLP 195
           QLMKRGWLDF +++KEAF  +V QAVLG+HGVD QF GINFLESLVSEFSPSTS+AMGLP
Sbjct: 132 QLMKRGWLDFAAAEKEAFMYEVKQAVLGVHGVDVQFTGINFLESLVSEFSPSTSTAMGLP 191

Query: 196 REFHEQCRISLELDYLKTFYCWARDAALSVTKQIIESDAAASEVKACTAALRLLHQILNW 255
           REFHEQC   LEL+YLKTFYCWA+DAA+SVT +IIES +A  EVK CTAALRL+ QILNW
Sbjct: 192 REFHEQCLKLLELEYLKTFYCWAQDAAVSVTSRIIESHSAVPEVKVCTAALRLMLQILNW 251

Query: 256 DFQFDTS---GRKISINVFSAGVRTETSSSKRSECIIVQPGPAWCDALISSGHIVWLLNL 312
           DF+++T+   G K S++ F+ GVR + +S KRSECI+VQPGP+W D LIS+GHI WLL L
Sbjct: 252 DFRYNTNMAKGAKPSMDAFNDGVRHDIASPKRSECILVQPGPSWRDVLISNGHIGWLLGL 311

Query: 313 YSALRQKFSSEGYWLDCPIAVSARKLIVQLCSLTGTVFPSDNGKMQEHHLLQLLSGILEW 372
           Y ALRQKFS EGYWLDCP+AVSARKLIVQ CSLTGT+FPS N  MQEHHLLQLLSGI+ W
Sbjct: 312 YGALRQKFSCEGYWLDCPVAVSARKLIVQFCSLTGTIFPSAN--MQEHHLLQLLSGIIPW 369

Query: 373 VDPPDVVAQAIESGKSESEMLDGCRALLSIATVTTPFVFDRLLKSIRPFGTLTLLSNLMC 432
           +DPP  V+QAIE GKSESEMLDGCRALLS+ATVTTP VFD+LLKS+ PFGTLTLLS LMC
Sbjct: 370 IDPPHAVSQAIECGKSESEMLDGCRALLSMATVTTPTVFDQLLKSVSPFGTLTLLSTLMC 429

Query: 433 EVVKVLMMNNTEEGTWSWEARDILLDTWTTLLVSLDSTGRNVVLPLEVRNAAASLFALIV 492
           EV+KVLM  NTEE TWSW ARDILLDTWTTLL+  +    N   P E  NAAA+LFALIV
Sbjct: 430 EVIKVLMATNTEEETWSWMARDILLDTWTTLLIVCE----NARFPSEGINAAANLFALIV 485

Query: 493 ESELKVASASAMDDNGEFNYLQASISAMDERLSSYALIARAAIDATVPLLTRLFSERFAR 552
           E+EL+ ASASA +D+ +  YLQASISAMDERLSSYALIARAAID  +PLLTRLF+ERFAR
Sbjct: 486 EAELRAASASAFNDDEDSQYLQASISAMDERLSSYALIARAAIDVAIPLLTRLFTERFAR 545

Query: 553 LHQGRGMIDPTETLEELYSLLLITGHVLADEGEGEIPVVPNAIQTHFVDTIEAAKHPVVL 612
           LHQG+G+ DPTETLEELYSLLLITGHVLADEGEGE P VP AIQTHFVD +E  KHPVV+
Sbjct: 546 LHQGKGITDPTETLEELYSLLLITGHVLADEGEGETPSVPMAIQTHFVDIVETHKHPVVV 605

Query: 613 LCGSIIKFAEWSLDPEARASVFSPRLMEAIVWFLARWSQTYLMPLEEFRDSSTNLCHDTG 672
           L  +II+FAE SLD E R SVFSPRLMEA++WFLARWS TYLM  EE R+ + N    +G
Sbjct: 606 LSSTIIRFAEQSLDQEMRTSVFSPRLMEAVIWFLARWSSTYLMVPEECREDNCN----SG 661

Query: 673 YQHQ----SSTSRKALLSFFGEHNQGKPVLDIIVRISMTTLVSYPGEKDLQELTCNQLLH 728
           Y H+    S  SRKALLSFFG++NQGKPVLD+IVRISM TL+SYPGEKDLQ LTC QLLH
Sbjct: 662 YDHESWLRSQHSRKALLSFFGQYNQGKPVLDVIVRISMMTLISYPGEKDLQALTCYQLLH 721

Query: 729 ALVRRKNVCVHLVALGSWRELASAFANDKTLILLNSTNQRSLAQTLVLSAYGMRNSESSN 788
           +LVRRKNVC HLVA  SWRELA+AFAN +TL  L+ST+QRSLAQTLVLSA GMRN E+SN
Sbjct: 722 SLVRRKNVCTHLVAFDSWRELANAFANGRTLFSLHSTHQRSLAQTLVLSASGMRNPEASN 781

Query: 789 QYVRDLTRHATAYLVELSGKNDLKNVSQQPDIILLVSCLLERLRGAANATEPRTQKAIYE 848
           QYVRDLT H TAYLVE+S KNDLKN SQQPDIIL VSCLLERLRGAA A EPRTQKAIYE
Sbjct: 782 QYVRDLTSHMTAYLVEMSNKNDLKNFSQQPDIILSVSCLLERLRGAARALEPRTQKAIYE 841

Query: 849 MGFSVMNPVLLLLEVYKHESAVVYLLLKFVVDWVDGQISYLEVQETNIVIDFCTRLLQLY 908
           MGFSVMN VL+LLEVYKHE AVVYLLLKFVVDWVDG+I YLE QET IV+DFC RLLQLY
Sbjct: 842 MGFSVMNSVLVLLEVYKHEFAVVYLLLKFVVDWVDGEIIYLEAQETAIVVDFCMRLLQLY 901

Query: 909 SSHNIGKMLMTQSSCLLGEAKTEKYKDLRALFQLLSNLCSKDLVGLSSTCIHT 961
           SSHNIGK+ ++ SS LL EAKTE YKDLRAL QL++NLCSKD+V  SS  I T
Sbjct: 902 SSHNIGKISVSLSSSLLSEAKTEMYKDLRALLQLIANLCSKDMVDFSSDSIET 954

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|255561939\|ref\|XP_002521978.1\| protein with unknown function [Ricinus communis] gi\|223538782\|gb\|EEF40382.1\| protein with unknown function [Ricinus communis]	Back alignment and taxonomy information

>gi\|359488084\|ref\|XP_002266608.2\| PREDICTED: exportin-4-like [Vitis vinifera]	Back alignment and taxonomy information

>gi\|297828948\|ref\|XP_002882356.1\| hypothetical protein ARALYDRAFT_317312 [Arabidopsis lyrata subsp. lyrata] gi\|297328196\|gb\|EFH58615.1\| hypothetical protein ARALYDRAFT_317312 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|334185076\|ref\|NP_187099.6\| uncharacterized protein [Arabidopsis thaliana] gi\|332640567\|gb\|AEE74088.1\| uncharacterized protein [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|449449573\|ref\|XP_004142539.1\| PREDICTED: exportin-4-like [Cucumis sativus] gi\|449479730\|ref\|XP_004155691.1\| PREDICTED: exportin-4-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|356504127\|ref\|XP_003520850.1\| PREDICTED: exportin-4-like [Glycine max]	Back alignment and taxonomy information

>gi\|356571192\|ref\|XP_003553763.1\| PREDICTED: exportin-4-like [Glycine max]	Back alignment and taxonomy information

>gi\|224145812\|ref\|XP_002325773.1\| predicted protein [Populus trichocarpa] gi\|222862648\|gb\|EEF00155.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|242039377\|ref\|XP_002467083.1\| hypothetical protein SORBIDRAFT_01g019330 [Sorghum bicolor] gi\|241920937\|gb\|EER94081.1\| hypothetical protein SORBIDRAFT_01g019330 [Sorghum bicolor]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		971
MGI\|MGI:1888526		1151	Xpo4 "exportin 4" [Mus musculu	0.368	0.311	0.271	1.7e-49
RGD\|1312015		1152	Xpo4 "exportin 4" [Rattus norv	0.368	0.310	0.275	2.8e-49
UNIPROTKB\|Q9C0E2		1151	XPO4 "Exportin-4" [Homo sapien	0.366	0.309	0.265	3.3e-48
UNIPROTKB\|E2QUP6		1151	XPO4 "Uncharacterized protein"	0.366	0.309	0.262	5.4e-48
UNIPROTKB\|F1P157		1146	XPO4 "Exportin-4" [Gallus gall	0.331	0.280	0.273	2.3e-47
UNIPROTKB\|Q5ZMR9		1154	XPO4 "Exportin-4" [Gallus gall	0.331	0.279	0.273	2.3e-47
ZFIN\|ZDB-GENE-030131-3062		1152	xpo4 "exportin 4" [Danio rerio	0.366	0.309	0.255	4.4e-47
UNIPROTKB\|F1MVW4		1153	XPO4 "Uncharacterized protein"	0.366	0.308	0.262	1.6e-45
UNIPROTKB\|F1RVA6		1002	XPO4 "Uncharacterized protein"	0.364	0.353	0.268	1.7e-38
TAIR\|locus:4515103505		130	AT4G38092 "AT4G38092" [Arabido	0.106	0.792	0.572	3.1e-25

MGI\|MGI:1888526 Xpo4 "exportin 4" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

 Score = 320 (117.7 bits), Expect = 1.7e-49, Sum P(3) = 1.7e-49
 Identities = 111/409 (27%), Positives = 197/409 (48%)

Query:   577 GHVLADEGEGEIPVVPNAIQTHF------VD---TIE--------AAKHPVVLLCGSIIK 619
             G++LAD+ +GE P++P  I  +       VD   T++        A+  P      S+I+
Sbjct:   547 GYLLADDTQGETPLIPPEIMEYSIKHSSEVDINTTLQILGSPGEKASSIPGYSRTDSVIR 606

Query:   620 FAEWSL---DPEARA------SVFSPRLMEAIVWFLARWSQTYLMPLEEFRDSSTNLCHD 670
                  L   + E+RA       + SP++ + IVWFL RW++TYL+  E+  D        
Sbjct:   607 LLSAVLRVSEVESRAIRADLTHLLSPQMGKDIVWFLKRWAKTYLLVDEKLYD-------- 658

Query:   671 TGYQHQSSTSRKALLSFFGEHNQGKP-VLDIIVRISMTTLVSYPGEKDLQELTCNQLLHA 729
                  Q S     L + FG   +G   ++  +++  ++ L  +  E+DL   T  QLL  
Sbjct:   659 -----QISLP---LSTAFGADTEGSQWIIGYLLQKVISNLSVWSSEQDLANDTV-QLLVT 709

Query:   730 LVRRKNVCVHLVALGSWRELASAFAN-DKTLILLNSTNQRSLAQTLVLSAYGMRNSESSN 788
             LV R+     ++   +W  LA  FA+    L  L+S  QR+L + LVL  +   ++E+  
Sbjct:   710 LVERRERANLVIQCENWWNLAKQFASRSPPLNFLSSPVQRTLMKALVLGGFAHMDTETKQ 769

Query:   789 QYVRDLTRHATAYLVELSGKNDLKNVSQQPDIILLVSCLLERLRGAANATEPRTQKAIYE 848
             QY  ++ +      + +  + + + + QQ ++   ++  LE L G A AT+      ++ 
Sbjct:   770 QYWTEVLQPLQQRFLRVINQENFQQMCQQEEVKQEITATLEALCGIAEATQIDNVAILFN 829

Query:   849 MGFSVMNPVLLLLEVYKHESAVVYLLLKFVVDWVDGQISYLEVQETNIVIDFCTRLLQLY 908
                  +N  + L+EVYK+    V L+++  V+    QI YL   +   + + C  LLQ+Y
Sbjct:   830 FLMDFLNNCIGLMEVYKNTPETVNLIIEVFVEVAHKQICYLGESKAMHLYEACLTLLQVY 889

Query:   909 SSHNIGKMLMTQSSCLLGEAKTEKYKDLRALFQLLSNLCSKDLVGLSST 957
             S +N+G+  +  +      A+ E+Y+DL  + +LL+NL SK+ +  S T
Sbjct:   890 SKNNLGRQRIDVT------AEEEQYQDLLLIMELLTNLLSKEFIDFSDT 932

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0046827 "positive regulation of protein export from nucleus" evidence=ISO

RGD\|1312015 Xpo4 "exportin 4" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

UNIPROTKB\|Q9C0E2 XPO4 "Exportin-4" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|E2QUP6 XPO4 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|F1P157 XPO4 "Exportin-4" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

UNIPROTKB\|Q5ZMR9 XPO4 "Exportin-4" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-030131-3062 xpo4 "exportin 4" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

UNIPROTKB\|F1MVW4 XPO4 "Uncharacterized protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|F1RVA6 XPO4 "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

TAIR\|locus:4515103505 AT4G38092 "AT4G38092" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		971
KOG1410		1082	consensus Nuclear transport receptor RanBP16 (impo	100.0
KOG4541		748	consensus Nuclear transport receptor exportin 4 (i	100.0
COG5101		1053	CRM1 Importin beta-related nuclear transport recep	99.98
KOG2020		1041	consensus Nuclear transport receptor CRM1/MSN5 (im	99.87
KOG4541		748	consensus Nuclear transport receptor exportin 4 (i	99.87
KOG2022		982	consensus Nuclear transport receptor LGL2 (importi	99.69
KOG2021		980	consensus Nuclear mRNA export factor receptor LOS1	99.62
KOG2171		1075	consensus Karyopherin (importin) beta 3 [Nuclear s	99.29
KOG2023		885	consensus Nuclear transport receptor Karyopherin-b	98.96
PF08389		148	Xpo1: Exportin 1-like protein; InterPro: IPR013598	98.84
KOG1991		1010	consensus Nuclear transport receptor RANBP7/RANBP8	98.63
PF03810		77	IBN_N: Importin-beta N-terminal domain; InterPro:	98.57
KOG2081		559	consensus Nuclear transport regulator [Intracellul	98.28
KOG1241		859	consensus Karyopherin (importin) beta 1 [Nuclear s	98.17
KOG1992		960	consensus Nuclear export receptor CSE1/CAS (import	97.74
KOG1993		978	consensus Nuclear transport receptor KAP120 (impor	97.36
COG5656		970	SXM1 Importin, protein involved in nuclear import	96.43
COG5657		947	CSE1 CAS/CSE protein involved in chromosome segreg	96.3
COG5215		858	KAP95 Karyopherin (importin) beta [Intracellular t	94.19
KOG2274		1005	consensus Predicted importin 9 [Intracellular traf	92.41

>KOG1410 consensus Nuclear transport receptor RanBP16 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

Probab=100.00  E-value=1.1e-147  Score=1219.12  Aligned_cols=812  Identities=17%  Similarity=0.243  Sum_probs=725.4

Q ss_pred             HhHHHHHHHHHHHHHHhhCCCC---HHHHHHHHHHhhcCCChHHHHHHHHhcCCchhHHHHHHHHHHHHHhhccCCCCHH
Q 002082           26 AKLQSIMHSIEIACSSIQMHVN---PAAAEATILGLCQSPQPYKACQFILENSQVANARFQAAAAIRDAAMREWSFLTAD  102 (971)
Q Consensus        26 ~~l~~~~~~lE~~~~~ly~~~~---r~~Ae~~L~~f~~~~~~~~~c~~iLe~S~~~y~~f~a~~~L~~~i~~~W~~l~~~  102 (971)
                      ++|    +|||.+|+.+|++.|   |.+||+.|.+|..+|+++++|+.||++++.||.++.|++.|.+.+.++- .+|.+
T Consensus         2 ~sL----aqLe~lCk~LY~s~D~~~R~~AE~~L~e~s~speclskCqlll~~gs~pYs~mlAst~L~Klvs~~t-~lpl~   76 (1082)
T KOG1410|consen    2 QSL----AQLESLCKDLYESTDPTARHRAEKALAELSESPECLSKCQLLLERGSYPYSQMLASTCLMKLVSRKT-PLPLE   76 (1082)
T ss_pred             ccH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHcCCC-CCcHH
Confidence            467    999999999999875   8999999999999999999999999999999999999999999999974 79999


Q ss_pred             HHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhhcCCCCCCC---chhhHHHHHHHHhccCCChhHHHHHHHHHHH
Q 002082          103 EKKSLIGFCLCFVMQHASSPEGYVQAKISSVAAQLMKRGWLDFTSS---DKEAFFSQVHQAVLGIHGVDTQFIGINFLES  179 (971)
Q Consensus       103 ~k~~lr~~ll~yl~~~~~~l~~~V~~~l~~~la~i~K~~w~d~~~~---~~~~~~~~i~~~l~~~~~~~~~~igl~iL~~  179 (971)
                      ||.+||+|++||+.++++.+++||...++|++|+|+|+||+|.++.   +|+ .+.++.++++. ++.+|++||+.||++
T Consensus        77 qrldir~Yilnylat~~Pk~~~fvi~sLiQl~arlTK~gW~d~~k~~y~FRd-~v~~~~kfl~~-~~ve~~~igv~iLsq  154 (1082)
T KOG1410|consen   77 QRLDIRNYILNYLATGAPKLAPFVIQSLIQLFARLTKLGWFDQQKDEYVFRD-PVDDVTKFLQM-DNVEHCIIGVQILSQ  154 (1082)
T ss_pred             HHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHhccccccccccchhhh-hHHHHHHHhcc-CchHHHHHHHHHHHH
Confidence            9999999999999999889999999999999999999999997654   365 88999999985 669999999999999


Q ss_pred             HHhhhCCCCCCCCCCCHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHhccccccc
Q 002082          180 LVSEFSPSTSSAMGLPREFHEQCRISLELDYLKTFYCWARDAALSVTKQIIESDAAASEVKACTAALRLLHQILNWDFQF  259 (971)
Q Consensus       180 lv~Efs~~~ss~~gl~~~~Hrk~~~~f~~~~L~~if~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~L~l~~~~LswdF~~  259 (971)
                      ||+||+..+.   +.|.++|||.+.+|||+.|.+||.+++.+|+...+..++.   ..+.+++.++|++..+||+|||+|
T Consensus       155 LvqemN~~~~---~~p~tkHRkias~FRD~sL~~vf~laln~L~~~~~~nlnd---~~q~~L~~~vL~L~l~Cl~FDfiG  228 (1082)
T KOG1410|consen  155 LVQEMNQADG---MDPSTKHRKIASSFRDDSLFDVFSLALNLLKDNVDLNLND---RAQLGLLMQVLKLNLNCLNFDFIG  228 (1082)
T ss_pred             HHHHhhCCCC---CCcchHHHHHHhhhhhhHHHHHHHHHHHHHHHhcccCccc---HhHhhHHHHHHHHHhhhccccccc
Confidence            9999999877   8899999999999999999999999999999877443332   235789999999999999999999


Q ss_pred             CCCCCcccccccccccccccCCCCCCcccccCCCccchHhhcccchHHHHHHHHHHHHhccccCCCCCCccchHHHHHHH
Q 002082          260 DTSGRKISINVFSAGVRTETSSSKRSECIIVQPGPAWCDALISSGHIVWLLNLYSALRQKFSSEGYWLDCPIAVSARKLI  339 (971)
Q Consensus       260 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~Wr~~l~~~~~l~llf~ly~~~r~~~~~~~~~~~~~l~~~~l~cL  339 (971)
                      ++.||+                  +||..|+|+|++||..|.|+.++++||++|..+           ||+++..+++||
T Consensus       229 ss~DEs------------------sed~ctVQIPTsWRs~f~d~stlqlfFdly~sl-----------p~~~S~~alscl  279 (1082)
T KOG1410|consen  229 SSTDES------------------SEDLCTVQIPTSWRSSFLDSSTLQLFFDLYHSL-----------PPELSELALSCL  279 (1082)
T ss_pred             cccccc------------------cccccceecCcHHHHHhcCchHHHHHHHHhccC-----------CchhhHHHHHHH
Confidence            999998                  999999999999999999999999999999877           788999999999


Q ss_pred             HHHhhcccCccCCCChhhHHHHHHHHHHhhhhhcCChhhhHHHhhhCCCh-hhHHHHHHHHHHHHhhcChhhHHHHhhcc
Q 002082          340 VQLCSLTGTVFPSDNGKMQEHHLLQLLSGILEWVDPPDVVAQAIESGKSE-SEMLDGCRALLSIATVTTPFVFDRLLKSI  418 (971)
Q Consensus       340 ~qLasl~~~~f~~~~~~~r~~yl~~~l~~~~~il~~~~~~~~~~~~gl~~-~~~~e~cr~L~rL~~~~~~~~~~~l~~~~  418 (971)
                      +|+||+||++|++.   +|.+|+++++.|+..|+++|.        |+++ .|||||||+|+||++||++.++..+.+  
T Consensus       280 vqlASvRRsLFN~a---eRa~yl~~Lv~Gvk~il~np~--------~LsD~~nyHeFCRllaRlktNYQL~ELv~v~~--  346 (1082)
T KOG1410|consen  280 VQLASVRRSLFNGA---ERAKYLQHLVEGVKRILENPQ--------GLSDPANYHEFCRLLARLKTNYQLGELVKVEC--  346 (1082)
T ss_pred             HHHHHHHHHHhCCH---HHHHHHHHHHHHHHHHHhCCc--------CCCCcchHHHHHHHHHHHHhhhhhHhhhccCC--
Confidence            99999999999644   699999999999999999876        8877 999999999999999999888877664  


Q ss_pred             CchhHHHHHHHHHHHHHHHHhhhhcccCcchHHHHHHHHHHHHHhhhcccccCCCCCCChhhhhhHHHHHHHHHHhcccc
Q 002082          419 RPFGTLTLLSNLMCEVVKVLMMNNTEEGTWSWEARDILLDTWTTLLVSLDSTGRNVVLPLEVRNAAASLFALIVESELKV  498 (971)
Q Consensus       419 ~~~~~l~~L~~lt~~~i~~~~~~~~~~~~~~~es~~~LL~~W~~lv~~~~~~~~~~~~p~~l~~~~~~I~~~Yi~srL~~  498 (971)
                          |-++     +.+++.||+.+.+.|+|+++|++|||..|.+|+.++||+|++  .|+-+.+|+|+|+++||.||++.
T Consensus       347 ----Y~e~-----irLiAeFTv~SLq~wefa~nSvyyLlt~WqRmvaSVPyvk~~--~phlLd~y~PeIt~afi~SRl~s  415 (1082)
T KOG1410|consen  347 ----YPEV-----IRLIAEFTVTSLQHWEFAPNSVYYLLTLWQRMVASVPYVKNT--EPHLLDTYCPEITKAFITSRLQS  415 (1082)
T ss_pred             ----cHHH-----HHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHhcCCcccCC--ChHHHhhhcHHHHHHHHHHHhhh
Confidence                3343     478889999999999999999999999999999999999875  68888899999999999999999


Q ss_pred             ccccccCCCCcccchhccHhHHHHHHHHHHHHHHhcHhhhHHHHHHHHHHHHHHHhccc--CCCCC--chhHH-HHHHHH
Q 002082          499 ASASAMDDNGEFNYLQASISAMDERLSSYALIARAAIDATVPLLTRLFSERFARLHQGR--GMIDP--TETLE-ELYSLL  573 (971)
Q Consensus       499 ~~~~~~~d~e~de~~~~d~~~~~eqL~~ia~l~R~~~~~t~~lL~~l~~~~~~~l~~~~--~~~~~--~~~~E-~L~WLv  573 (971)
                      ++..++|+   .|+|+||.+...+||+.++.+|||.|++||.+|+++|++..+.|++..  ++.+.  ..+.| +|.|||
T Consensus       416 V~~ivrd~---~d~PLdd~~~~~q~le~l~~icRceYEkTc~llvq~fdq~aqsyqe~~~~~s~~~~d~ai~EgrL~Wlv  492 (1082)
T KOG1410|consen  416 VEIIVRDG---LDDPLDDTGAVQQQLEQLATICRCEYEKTCALLVQLFDQNAQSYQELLQNGSANDADIAIQEGRLVWLV  492 (1082)
T ss_pred             hheecccC---CCCcchhhHHHHHHHHHhhhhhhhhHhhHHHHHHHHHhhhHHHHHHHhcccCCCchhHHHHhhhhhhhH
Confidence            99988765   578999999999999999999999999999999999999999998753  22222  47899 999999


Q ss_pred             HHHHhHhccCC-----CCCcccCchhhhhhhhhhhhcccchHHHHHHHHHHHHHhhcCccccccCCCHHHHHHHHHHHHH
Q 002082          574 LITGHVLADEG-----EGEIPVVPNAIQTHFVDTIEAAKHPVVLLCGSIIKFAEWSLDPEARASVFSPRLMEAIVWFLAR  648 (971)
Q Consensus       574 ~i~g~~lad~~-----~ge~~~ip~~i~~~~~~~~~~~~d~vv~Lv~~l~~l~~~~l~~~~~~~~~Sp~L~~a~lwfl~~  648 (971)
                      +|+|.++++..     |.++.|+++-                +.-|.+++++++.++     +.....+++.+++|||++
T Consensus       493 ~lvgtvV~gk~t~~Std~~d~mDgEL----------------~arvlql~nlmdsr~-----~~~~n~rle~ail~f~eq  551 (1082)
T KOG1410|consen  493 YLVGTVVGGKTTATSTDEHDAMDGEL----------------SARVLQLVNLMDSRL-----PLKGNERLELAILHFLEQ  551 (1082)
T ss_pred             HHhHHHhcceecccccchhhhhhhHH----------------HHHHHHHHHhhhccc-----chhhhHHHHHHHHHHHHH
Confidence            99999999874     3333344431                111345555555443     445778999999999999


Q ss_pred             HHHhccCCcccccccCCCCCCCCCccccccchhhHHHhhhcCCCCc--hhHHHHHHHHHHHhccCCCCchhHHHHHHHHH
Q 002082          649 WSQTYLMPLEEFRDSSTNLCHDTGYQHQSSTSRKALLSFFGEHNQG--KPVLDIIVRISMTTLVSYPGEKDLQELTCNQL  726 (971)
Q Consensus       649 ~~~~Yl~~~~d~~~~~~~~~~~~~~~~~s~~~~~~l~~~fg~~~~~--~~vl~~iv~ki~~nL~~w~~e~~v~~~t~~~L  726 (971)
                      ||++|+|   |+.                ++++|.|.+.-+..|..  ..+++.||.||.+|||+|+..++|+..|+ .|
T Consensus       552 FRk~Yvg---DQ~----------------~rsSkvY~rl~e~Lgi~de~~~L~viv~KI~TNLK~w~~~e~vi~~tL-sl  611 (1082)
T KOG1410|consen  552 FRKAYVG---DQI----------------QRSSKVYARLSEVLGITDESDVLGVIVGKILTNLKYWGRNEPVISLTL-SL  611 (1082)
T ss_pred             HHHHHHH---HHH----------------HHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhcccccCCchHHHHHH-HH
Confidence            9999999   655                35678998888887754  78999999999999999999999999999 99


Q ss_pred             HHHHhccccchhhHHcchHHHHHHHHhhccc-cccccC-----chhhHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHH
Q 002082          727 LHALVRRKNVCVHLVALGSWRELASAFANDK-TLILLN-----STNQRSLAQTLVLSAYGMRNSESSNQYVRDLTRHATA  800 (971)
Q Consensus       727 L~~L~~~~~~~~~l~~l~~~~~L~~~~~~~~-~~~~l~-----~~~~r~l~~aL~~l~~~~~~~~~~~~~f~~~l~pl~~  800 (971)
                      |.+|+.+++.+++|+++|.++++.+||+++| +|++..     .++|++||.||+|+++  .|..+++..|++||.|++.
T Consensus       612 f~dLs~GY~~~kkL~kl~~VqfmlnNHT~ehF~FLg~~~~~~~~r~RTTFY~al~rLl~--~d~sede~~fe~fm~PLt~  689 (1082)
T KOG1410|consen  612 FNDLSLGYSAVKKLVKLDAVQFMLNNHTSEHFPFLGINIDLQDMRCRTTFYTALTRLLM--VDLSEDEDMFERFMLPLTD  689 (1082)
T ss_pred             HHHHhhhHHHHHHHhcchhhhhHhcccchhhCcccccCccchhhhhHhHHHHHHHHHHh--hcccccHHHHHHHHHHHHH
Confidence            9999999999999999999999999999988 787765     3578889999999995  5555678899999999999


Q ss_pred             HHHHHhCCCCcccccChhhHHHHHHHHHHHhhchhhccCcC-cHHHHHHHHHhh-hHHHHHHHHhhcCChHHHHHHHHHH
Q 002082          801 YLVELSGKNDLKNVSQQPDIILLVSCLLERLRGAANATEPR-TQKAIYEMGFSV-MNPVLLLLEVYKHESAVVYLLLKFV  878 (971)
Q Consensus       801 ~~~~l~~~~~~~~~~~~~~v~~~v~~ll~~LrGi~~a~~~~-s~~~lf~~l~~~-l~~l~~l~~~y~~~p~Vv~~iLkf~  878 (971)
                      .|+.+++.-. ++...++++|..++|++|||||||.|.+++ +|+++|||+||. ||.+.+.++.|.++|+|++|||||+
T Consensus       690 ~fe~v~~~~~-nn~f~ee~vK~~liGL~RDLRGiA~A~~tktsy~~LFdWmYP~~mpllq~~Ve~W~~~p~vtTPiLklm  768 (1082)
T KOG1410|consen  690 AFEGVLQVFQ-NNCFEEEQVKRILIGLCRDLRGIAFASNTKTSYQMLFDWMYPEYMPLLQRAVEKWYGCPDVTTPILKLM  768 (1082)
T ss_pred             HHHHHHHHhc-cccccHHHHHHHHHHHHHHhhhhhhhhccchHHHHHHHHhhhhHHHHHHHHHHhcCCCCccccHHHHHH
Confidence            9998875311 012456889999999999999999999999 999999999999 9999999999999999999999999


Q ss_pred             HHHHhccccccC----cchhHHHHHHHHHHHHHHHhcccC--ccccccccccccchhhhhhhhHHHHHHHHHHhhcCCCc
Q 002082          879 VDWVDGQISYLE----VQETNIVIDFCTRLLQLYSSHNIG--KMLMTQSSCLLGEAKTEKYKDLRALFQLLSNLCSKDLV  952 (971)
Q Consensus       879 ~elv~n~~~~l~----s~~g~~Lf~~~~~li~~Y~~~~~~--~~~~~~~~~~~~~~~~e~yk~l~~~l~iL~~~lsg~~v  952 (971)
                      +|+|+||.|||+    ||||++||||++++|++||++++.  .++       ++..|++|||||++|+.||+++++|+||
T Consensus       769 aE~v~NrsQRL~Fd~SSpngiLLFrEtSKmv~~YG~riL~Lp~vs-------kdqiY~~kyKgI~v~~siLk~AL~GnYv  841 (1082)
T KOG1410|consen  769 AELVQNRSQRLKFDVSSPNGILLFRETSKMVSIYGNRILQLPEVS-------KDQIYAEKYKGISVCFSILKNALSGNYV  841 (1082)
T ss_pred             HHHHhhhHhheecccCCCceeEEehhhhHHHHHHhhHhhcccCcc-------hhhhHHHHhcCceehHHHHHHHhhcCcc
Confidence            999999999998    999999999999999999999883  333       6679999999999999999999999999


Q ss_pred             cCCCC
Q 002082          953 GLSST  957 (971)
Q Consensus       953 ~fg~d  957 (971)
                      |||+.
T Consensus       842 ~FGVF  846 (1082)
T KOG1410|consen  842 NFGVF  846 (1082)
T ss_pred             cccee
Confidence            99964

>KOG4541 consensus Nuclear transport receptor exportin 4 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]	Back alignment and domain information

>KOG2020 consensus Nuclear transport receptor CRM1/MSN5 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG4541 consensus Nuclear transport receptor exportin 4 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane	Back alignment and domain information

>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF03810 IBN_N: Importin-beta N-terminal domain; InterPro: IPR001494 Karyopherins are a group of proteins involved in transporting molecules through the pores of the nuclear envelope	Back alignment and domain information

>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>COG5657 CSE1 CAS/CSE protein involved in chromosome segregation [Cell division and chromosome partitioning]	Back alignment and domain information

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]	Back alignment and domain information

>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		971
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-16
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-05
3m1i_C		1049	Exportin-1; heat repeat, GTP-binding, nucleotide-b	4e-09
3gjx_A		1073	Exportin-1; transport, cytoplasm, nucleus, RNA-bin	2e-08
2x19_B		963	Importin-13; nuclear transport, protein transport;	1e-07
3a6p_A		1204	Exportin-5; exportin-5, RANGTP, nuclearexport, imp	1e-07
3ibv_A		980	Exportin-T; karyopherin, heat repeat, cytoplasm, n	5e-07
2x1g_F		971	Cadmus; transport protein, developmental protein,	1e-06

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 83.7 bits (206), Expect = 2e-16
 Identities = 116/704 (16%), Positives = 196/704 (27%), Gaps = 217/704 (30%)

Query: 281 SSKRSECIIVQPGPAWCDALISSGHIVWLLNLY-SALRQKFSSEG----Y-WLDCPIAVS 334
           S +  + II+       DA+  +  + W L      + QKF  E     Y +L  PI   
Sbjct: 47  SKEEIDHIIMSK-----DAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTE 101

Query: 335 AR-------KLIVQLCSL--TGTVFPSDNGKMQEHHLLQLLSGILEWVDPPDVVAQAIE- 384
            R         I Q   L     VF   N    + +L +L   +LE     +V+   +  
Sbjct: 102 QRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYL-KLRQALLELRPAKNVLIDGVLG 160

Query: 385 SGKSESEMLDGCRALLSIATVTTPFVFDRLLKSIRPFGT--LTLLSNLMCEVVKVLMMNN 442
           SGK+    LD C                  ++    F    L L  N       + M+  
Sbjct: 161 SGKT-WVALDVCL--------------SYKVQCKMDFKIFWLNL-KNCNSPETVLEMLQK 204

Query: 443 TEEGTWSWEARDILLDTWTTLLVSLDSTGRNVVLPLE-VRNAAASLF-------ALIVES 494
                        LL        S      N+ L +  ++     L         L+V  
Sbjct: 205 -------------LLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLV-- 249

Query: 495 ELKVASASAMDD--NGEFNYLQASISAMDERLSSYALIA---RAAIDATVPLLTRLFSER 549
                    + +  N +      + +A +  LS   L+    +   D      T   S  
Sbjct: 250 ---------LLNVQNAK------AWNAFN--LSCKILLTTRFKQVTDFLSAATTTHIS-- 290

Query: 550 FARLHQGRGMIDPTETLEELYSLLLITGHVLADEGEGEIPVVPNAIQTHFVDTIEAAK-H 608
              L      + P E    L    L       D    ++P              E    +
Sbjct: 291 ---LDHHSMTLTPDEVKS-LLLKYL-------DCRPQDLPR-------------EVLTTN 326

Query: 609 PVVLLCGSIIKFAEWSLDPEARASVFSPRLMEAIVWFLARWSQTYLMPLEEFRDSSTNLC 668
           P  L   SII  AE   D  A              W    W       L    +SS    
Sbjct: 327 PRRL---SII--AESIRDGLAT-------------W--DNWKHVNCDKLTTIIESS---- 362

Query: 669 HDTGYQHQSSTSRKAL---LSFFGEHNQGKPVLDIIVRISMTTLVSYPGEKDLQELTCNQ 725
                        + +   LS F               I    L     +    +     
Sbjct: 363 ----LNVLEPAEYRKMFDRLSVFPPS----------AHIPTILLSLIWFDVIKSD--VMV 406

Query: 726 LLHALVRRKNVCVHLVALGSWRELASAFANDKTL-ILLNSTNQRSLAQTLVLSAYGMRNS 784
           +++ L +       LV      + ++       L + +   N+ +L +++V   Y +  +
Sbjct: 407 VVNKLHKYS-----LVE--KQPKESTISIPSIYLELKVKLENEYALHRSIV-DHYNIPKT 458

Query: 785 ESSNQYVRD---------LTRHATAYLVELSGKNDLKNVSQQPDIILLVSCLLERLRGAA 835
             S+  +           +  H     +E   +  L        + L    L +++R  +
Sbjct: 459 FDSDDLIPPYLDQYFYSHIGHHLKN--IEHPERMTL-----FRMVFLDFRFLEQKIRHDS 511

Query: 836 NATEPRTQKAIYEMGFSVMNPVLLLLEVYK--------HESAVVYLLLKFVVDWVDGQIS 887
            A              S++N  L  L+ YK            +V  +L F          
Sbjct: 512 TAWNASG---------SILN-TLQQLKFYKPYICDNDPKYERLVNAILDF---------- 551

Query: 888 YLEVQETNIVIDFCTRLLQLYSSHNIGKMLMTQSSCLLGEAKTE 931
            L   E N++    T LL++         LM +   +  EA  +
Sbjct: 552 -LPKIEENLICSKYTDLLRI--------ALMAEDEAIFEEAHKQ 586

PyMOL of 1vt4

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B Length = 1049	Back alignment and structure

>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A Length = 1073	Back alignment and structure

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B Length = 963	Back alignment and structure

>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens} Length = 1204	Back alignment and structure

>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T* Length = 980	Back alignment and structure

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} Length = 971	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		971
3gjx_A		1073	Exportin-1; transport, cytoplasm, nucleus, RNA-bin	100.0
4hat_C		1023	Exportin-1; heat repeat, nuclear export, RAN-ranbp	100.0
2x19_B		963	Importin-13; nuclear transport, protein transport;	100.0
3ibv_A		980	Exportin-T; karyopherin, heat repeat, cytoplasm, n	99.96
3a6p_A		1204	Exportin-5; exportin-5, RANGTP, nuclearexport, imp	99.96
3m1i_C		1049	Exportin-1; heat repeat, GTP-binding, nucleotide-b	99.96
2x1g_F		971	Cadmus; transport protein, developmental protein,	99.95
4fdd_A		852	Transportin-1; heat repeats, karyopherin, nuclear	99.57
1wa5_C		960	Importin alpha RE-exporter; nuclear transport/comp	99.47
2bpt_A		861	Importin beta-1 subunit; nuclear transport, nucleo	99.18
1qgr_A		876	Protein (importin beta subunit); transport recepto	98.84
1ibr_B		462	P95, importin beta-1 subunit, nuclear factor; smal	98.5
1u6g_C		1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	81.95

>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A	Back alignment and structure

Probab=100.00  E-value=1.5e-30  Score=328.20  Aligned_cols=637  Identities=13%  Similarity=0.155  Sum_probs=414.1

Q ss_pred             HHHHHHHHHhhCCCC--HHHHHHHHHHhhcCCChHHHHHHHHhcCCchhHHHHHHHHHHHHHhhccCCCCHHHHHHHHHH
Q 002082           33 HSIEIACSSIQMHVN--PAAAEATILGLCQSPQPYKACQFILENSQVANARFQAAAAIRDAAMREWSFLTADEKKSLIGF  110 (971)
Q Consensus        33 ~~lE~~~~~ly~~~~--r~~Ae~~L~~f~~~~~~~~~c~~iLe~S~~~y~~f~a~~~L~~~i~~~W~~l~~~~k~~lr~~  110 (971)
                      ++||+++.++|.|.+  |++|+++|.+|+++|++|..|..||++|++++++|||+++|++.|.++|..+++++|.+||++
T Consensus        28 ~~Le~lv~~ly~p~~~~r~qA~~~L~q~q~sp~aw~~~~~iL~~s~~~~vR~fAa~~L~~~I~~~W~~L~~e~~~~LR~~  107 (1073)
T 3gjx_A           28 NLLDNVVNCLYHGEGAQQRMAQEVLTHLKEHPDAWTRVDTILEFSQNMNTKYYGLQILENVIKTRWKILPRNQCEGIKKY  107 (1073)
T ss_dssp             HHHHHHHHTTTCSSHHHHHHHHHHHHTSSCCSCHHHHHTCC---CCSHHHHHHHHHHHHHHHHHTGGGSCHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHHcCchHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhhhCCHHHHHHHHHH
Confidence            789999999999854  899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCC-----ChhHHHHHHHHHHHHHHhhcCCCCCCCchhhHHHHHHHHhccCCChhHHHHHHHHHHHHHhhhC
Q 002082          111 CLCFVMQHASS-----PEGYVQAKISSVAAQLMKRGWLDFTSSDKEAFFSQVHQAVLGIHGVDTQFIGINFLESLVSEFS  185 (971)
Q Consensus       111 ll~yl~~~~~~-----l~~~V~~~l~~~la~i~K~~w~d~~~~~~~~~~~~i~~~l~~~~~~~~~~igl~iL~~lv~Efs  185 (971)
                      +++|+.+...+     .++.+++|+++++|.|+|++|++.    |+++++++.+.++  .++.++..++.+|..+.+|..
T Consensus       108 Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~P~~----Wp~fi~dLv~~~~--~~~~~~~~~L~IL~~L~EEV~  181 (1073)
T 3gjx_A          108 VVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWPKH----WPTFISDIVGASR--TSESLCQNNMVILKLLSEEVF  181 (1073)
T ss_dssp             HHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHTTTT----CTTHHHHHHHHHH--HCHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHccCccccccchHHHHHHHHHHHHHHHHhChhh----ccHHHHHHHHHhC--CCHHHHHHHHHHHHHHHHHHH
Confidence            99999985322     246778999999999999999984    9999999999997  478899999999999999976


Q ss_pred             CCCCCCCCCCHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHhcccccccCCCCCc
Q 002082          186 PSTSSAMGLPREFHEQCRISLELDYLKTFYCWARDAALSVTKQIIESDAAASEVKACTAALRLLHQILNWDFQFDTSGRK  265 (971)
Q Consensus       186 ~~~ss~~gl~~~~Hrk~~~~f~~~~L~~if~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~L~l~~~~LswdF~~~~~d~~  265 (971)
                      .....  .++-.+..+.+..++.. ++.||.++..+|+..           ....++..+|+++..+++|...+      
T Consensus       182 d~~~~--~l~~~r~~~lk~~L~~~-~~~Il~ll~~iL~~~-----------~~~~lv~~~L~~L~~~~sWI~i~------  241 (1073)
T 3gjx_A          182 DFSSG--QITQVKAKHLKDSMCNE-FSQIFQLCQFVMENS-----------QNAPLVHATLETLLRFLNWIPLG------  241 (1073)
T ss_dssp             TSHHH--HBCHHHHHHHHHHHHHT-CHHHHHHHHHHHHHC-----------CCHHHHHHHHHHHHHHTTTSCTH------
T ss_pred             hcccc--cccHHHHHHHHHHHHHH-HHHHHHHHHHHhccc-----------CCHHHHHHHHHHHHHHHHhcCHH------
Confidence            43221  23455667789999765 899999887777531           23578899999999999999765      


Q ss_pred             ccccccccccccccCCCCCCcccccCCCccchHhhcccchHHHHH-HHHHHHHhccccCCCCCCccchHHHHHHHHHHhh
Q 002082          266 ISINVFSAGVRTETSSSKRSECIIVQPGPAWCDALISSGHIVWLL-NLYSALRQKFSSEGYWLDCPIAVSARKLIVQLCS  344 (971)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~Wr~~l~~~~~l~llf-~ly~~~r~~~~~~~~~~~~~l~~~~l~cL~qLas  344 (971)
                                                       .+.+++++++++ .+   + +         ++.+...|.+||.++.+
T Consensus       242 ---------------------------------~i~~~~ll~~L~~~~---L-~---------~~~~r~aA~dcL~eIv~  275 (1073)
T 3gjx_A          242 ---------------------------------YIFETKLISTLIYKF---L-N---------VPMFRNVSLKCLTEIAG  275 (1073)
T ss_dssp             ---------------------------------HHHSSSHHHHHHHHT---S-S---------SHHHHHHHHHHHHHHHH
T ss_pred             ---------------------------------HhccchHHHHHHHHh---c-C---------ChHHHHHHHHHHHHHHh
Confidence                                             566777888774 32   2 1         36789999999999999


Q ss_pred             cccCccCCCChhhHHHHHHHHHHhhhhhcCChhhhHHHhhhCCCh-hhH-HHHHHHHHHHHhhcChhhHHHHhhccCchh
Q 002082          345 LTGTVFPSDNGKMQEHHLLQLLSGILEWVDPPDVVAQAIESGKSE-SEM-LDGCRALLSIATVTTPFVFDRLLKSIRPFG  422 (971)
Q Consensus       345 l~~~~f~~~~~~~r~~yl~~~l~~~~~il~~~~~~~~~~~~gl~~-~~~-~e~cr~L~rL~~~~~~~~~~~l~~~~~~~~  422 (971)
                      .+.+    +....-.+.+..+++.+..+++......+++..|-.+ .++ ..+||.+..+..+|.    .-+...   ..
T Consensus       276 k~~~----~~~~~~~~lf~~~~~~i~~ilp~~~~l~~~y~~~~~~d~e~~~~l~~~f~~~~e~~~----~lIe~~---p~  344 (1073)
T 3gjx_A          276 VSVS----QYEEQFETLFTLTMMQLKQMLPLNTNIRLAYSNGKDDEQNFIQNLSLFLCTFLKEHG----QLLEKR---LN  344 (1073)
T ss_dssp             SCSG----GGHHHHHHHHHHHHHHHHHHSCTTSCHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHH----HHHHHC---GG
T ss_pred             cccc----chHHHHHHHHHHHHHHHHHhcCCchhHHHHHhccchhhHHHHHHHHHHHHHHHHHHH----HHHhcC---cc
Confidence            8532    1111223344555566667776655555555555432 344 357777777766662    112211   01


Q ss_pred             HHHHHHHHHHHHHHHHhhhhcccCcchHHHHHHHHHHHHHhhhccc----ccCCCC---------CCChhhhhh---HHH
Q 002082          423 TLTLLSNLMCEVVKVLMMNNTEEGTWSWEARDILLDTWTTLLVSLD----STGRNV---------VLPLEVRNA---AAS  486 (971)
Q Consensus       423 ~l~~L~~lt~~~i~~~~~~~~~~~~~~~es~~~LL~~W~~lv~~~~----~~~~~~---------~~p~~l~~~---~~~  486 (971)
                      +...+......++..    +..+   -.|.+.+++++|..|.+.+-    +..+..         .+|.....|   ..+
T Consensus       345 ~~~~l~~~l~~ll~~----s~~~---d~ei~kitf~fW~~L~~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~y~~i~~~  417 (1073)
T 3gjx_A          345 LREALMEALHYMLLV----SEVE---ETEIFKICLEYWNHLAAELYRESPFSTSASPLLSGSQHFDIPPRRQLYLTVLSK  417 (1073)
T ss_dssp             GHHHHHHHHHHHHHH----TTCS---CHHHHHHHHHHHHHHHHHHHHHCCSCCCCSSCTTSSCCSCSCHHHHTTHHHHHH
T ss_pred             chHHHHHHHHHHHHH----hCCC---cHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhHHHHHHHHHHH
Confidence            111111111011111    1112   35999999999999988642    110000         012211111   223


Q ss_pred             HHHHHHHhccccccccccCCCCcccch-----hcc-HhHHHHHHHHHHHHHHhcHhhhHHHHHHHHHHHHHHHhcccCCC
Q 002082          487 LFALIVESELKVASASAMDDNGEFNYL-----QAS-ISAMDERLSSYALIARAAIDATVPLLTRLFSERFARLHQGRGMI  560 (971)
Q Consensus       487 I~~~Yi~srL~~~~~~~~~d~e~de~~-----~~d-~~~~~eqL~~ia~l~R~~~~~t~~lL~~l~~~~~~~l~~~~~~~  560 (971)
                      +... +-+||..|+.....|+|..|-.     +.| ...|+-.=+++..+....++.+...+.+.+.+..+      + .
T Consensus       418 L~~v-lI~~m~~P~ev~i~e~e~ge~~re~~~d~~~~~ly~~mrd~L~~lt~l~~~~~~~i~~~~l~~~~~------~-~  489 (1073)
T 3gjx_A          418 VRLL-MVSRMAKPEEVLVVENDQGEVVREFMKDTDSINLYKNMRETLVYLTHLDYVDTEIIMTKKLQNQVN------G-T  489 (1073)
T ss_dssp             HHHH-HHHTCCCSCCEEEEECSSSCEEEEECSSCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHT------S-C
T ss_pred             HHHH-HHHhcCCCccccccCcccchHHHHHHhhcchHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc------C-C
Confidence            3333 4588998875433232222211     112 12333333444666777788888877776664321      1 1


Q ss_pred             CC-chhHHHHHHHHHHHHhHhccCCCCCcccCchhhhhhhhhhhhcccchHHHHHHHHHHHHHhhcCccccccCCCHHHH
Q 002082          561 DP-TETLEELYSLLLITGHVLADEGEGEIPVVPNAIQTHFVDTIEAAKHPVVLLCGSIIKFAEWSLDPEARASVFSPRLM  639 (971)
Q Consensus       561 ~~-~~~~E~L~WLv~i~g~~lad~~~ge~~~ip~~i~~~~~~~~~~~~d~vv~Lv~~l~~l~~~~l~~~~~~~~~Sp~L~  639 (971)
                      .+ -..+|.+-|-+   |++- +.      +.|+.           ....+..++..++++++..-.     .--.+.+.
T Consensus       490 ~~sW~~lea~~~ai---gaIa-g~------~~~~~-----------E~~~Lp~vi~~Ll~L~e~~~~-----kd~k~~va  543 (1073)
T 3gjx_A          490 EWSWKNLNTLCWAI---GSIS-GA------MHEED-----------EKRFLVTVIKDLLGLCEQKRG-----KDNKAIIA  543 (1073)
T ss_dssp             CCCHHHHHHHHHHH---HHTT-TS------SCHHH-----------HHHHHHHHHHHHHHHHHHSCS-----HHHHHHHH
T ss_pred             CCCHHHHhHHHHHH---HHHH-Cc------CCccc-----------ccchHHHHHHHHhcccccccc-----cchhHHHH
Confidence            22 14455666655   3332 11      11110           011233455666777654211     00124667


Q ss_pred             HHHHHHHHHHHHhccCCcccccccCCCCCCCCCccccccchhhHHHhhhcCCCCchhHHHHHHHHHHHhccCCCCchhHH
Q 002082          640 EAIVWFLARWSQTYLMPLEEFRDSSTNLCHDTGYQHQSSTSRKALLSFFGEHNQGKPVLDIIVRISMTTLVSYPGEKDLQ  719 (971)
Q Consensus       640 ~a~lwfl~~~~~~Yl~~~~d~~~~~~~~~~~~~~~~~s~~~~~~l~~~fg~~~~~~~vl~~iv~ki~~nL~~w~~e~~v~  719 (971)
                      .+++|.++|+. -                              ++..       +...|..+++|++.-+.  ...+.|.
T Consensus       544 s~i~~vlgrY~-~------------------------------wl~~-------h~~~L~~vl~~L~~~m~--~~~~~vq  583 (1073)
T 3gjx_A          544 SNIMYIVGQYP-R------------------------------FLRA-------HWKFLKTVVNKLFEFMH--ETHDGVQ  583 (1073)
T ss_dssp             HHHHHHHHHCH-H------------------------------HHHH-------CHHHHHHHHHHHHHHTT--CCSTTHH
T ss_pred             HHHHHHHhhhH-H------------------------------HHHh-------CHHHHHHHHHHHHHHHh--cCCHHHH
Confidence            77788877652 1                              2221       11234445555554332  2466888


Q ss_pred             HHHHHHHHHHHhccccchhhHHc------chHHHHHHHHhhccccccccCchhhHHHHHHHHHHHhcCCCchhhHHHHHH
Q 002082          720 ELTCNQLLHALVRRKNVCVHLVA------LGSWRELASAFANDKTLILLNSTNQRSLAQTLVLSAYGMRNSESSNQYVRD  793 (971)
Q Consensus       720 ~~t~~~LL~~L~~~~~~~~~l~~------l~~~~~L~~~~~~~~~~~~l~~~~~r~l~~aL~~l~~~~~~~~~~~~~f~~  793 (971)
                      ..++ +-|..++.....  .++.      .|....+...+.+  -+.+++++....||.+++.++.+.++...+.+++..
T Consensus       584 ~aA~-~af~~i~~~C~~--~lv~~~~~e~~p~i~~il~~~~~--~~~~l~~~~~~~lyeav~~vi~~~p~~~~~~~~i~~  658 (1073)
T 3gjx_A          584 DMAC-DTFIKIAQKCRR--HFVQVQVGEVMPFIDEILNNINT--IICDLQPQQVHTFYEAVGYMIGAQTDQTVQEHLIEK  658 (1073)
T ss_dssp             HHHH-HHHHHHHHHTGG--GGTSCCTTCSSCHHHHHHTSHHH--HHTTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHH
T ss_pred             HHHH-HHHHHHHHHHHH--HHhhccccccchHHHHHHHHHHH--HHHhcCHHHHHHHHHHHHHHHHhCCCcchHHHHHHH
Confidence            8888 888888875321  1222      2455666665532  245678888889999999999877776667889999


Q ss_pred             HHHHHHHHHHHHhC----CCCcccccChhhHHHHHHHHHHHhhchhhccCcC
Q 002082          794 LTRHATAYLVELSG----KNDLKNVSQQPDIILLVSCLLERLRGAANATEPR  841 (971)
Q Consensus       794 ~l~pl~~~~~~l~~----~~~~~~~~~~~~v~~~v~~ll~~LrGi~~a~~~~  841 (971)
                      +|.|..++++++.+    +++   ...+++....+..++++...+|.|....
T Consensus       659 Lm~~~~~~w~~l~~~~~~~~~---~~~d~~~i~~l~~il~~n~~v~~~~g~~  707 (1073)
T 3gjx_A          659 YMLLPNQVWDSIIQQATKNVD---ILKDPETVKQLGSILKTNVRACKAVGHP  707 (1073)
T ss_dssp             HTHHHHHHHHHHHHHHHHCGG---GGGCHHHHHHHHHHHHHHHHHHHHHCGG
T ss_pred             HHHHHHHHHHHHHHHhhcCch---hccChHHHHHHHHHHhhhHHHHhhcchh
Confidence            99999999999985    332   3345666678999999999888877654

PyMOL of 3gjx

>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B	Back alignment and structure

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B	Back alignment and structure

>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*	Back alignment and structure

>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}	Back alignment and structure

>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B	Back alignment and structure

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}	Back alignment and structure

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*	Back alignment and structure

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A	Back alignment and structure

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A	Back alignment and structure

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A	Back alignment and structure

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A	Back alignment and structure

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		971
d1wa5c_		959	Exportin Cse1p {Baker's yeast (Saccharomyces cerev	99.36
d2bpta1		861	Importin beta {Baker's yeast (Saccharomyces cerevi	99.1
d1qgra_		876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	98.91
d1ibrb_		458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	97.85
d1qbkb_		888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	97.18

>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Exportin Cse1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.36  E-value=8.3e-08  Score=118.28  Aligned_cols=146  Identities=10%  Similarity=0.138  Sum_probs=126.4

Q ss_pred             HHHHHHHHHhhCCCCHHHHHHHHHHhhcCCChHHHHHHHHhcCCch-hHHHHHHHHHHHHHhhccCC------CCHHHHH
Q 002082           33 HSIEIACSSIQMHVNPAAAEATILGLCQSPQPYKACQFILENSQVA-NARFQAAAAIRDAAMREWSF------LTADEKK  105 (971)
Q Consensus        33 ~~lE~~~~~ly~~~~r~~Ae~~L~~f~~~~~~~~~c~~iLe~S~~~-y~~f~a~~~L~~~i~~~W~~------l~~~~k~  105 (971)
                      +++-++..+-..|..|++||+.|.++.++|+.+..+..|+.+.+.+ .++..|+-.||+.|.++|..      +|+++|.
T Consensus         5 ~~l~~ll~~s~~~~~~k~Ae~~L~~~~~~p~f~~~L~~i~~~~~~~~~iR~~A~i~lKn~i~~~W~~~~~~~~i~~e~k~   84 (959)
T d1wa5c_           5 ETVAKFLAESVIASTAKTSERNLRQLETQDGFGLTLLHVIASTNLPLSTRLAGALFFKNFIKRKWVDENGNHLLPANNVE   84 (959)
T ss_dssp             HHHHHHHHHTTSGGGHHHHHHHHHHHHTSTTHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHSBCSSSCBSSCHHHHH
T ss_pred             HHHHHHHHHCCChHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhcccccccCCCCHHHHH
Confidence            5555555555556569999999999999999999999999877765 69999999999999999964      9999999


Q ss_pred             HHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhhcCCCCCCCchhhHHHHHHHHhccCCChhHHHHHHHHHHHHHhhhC
Q 002082          106 SLIGFCLCFVMQHASSPEGYVQAKISSVAAQLMKRGWLDFTSSDKEAFFSQVHQAVLGIHGVDTQFIGINFLESLVSEFS  185 (971)
Q Consensus       106 ~lr~~ll~yl~~~~~~l~~~V~~~l~~~la~i~K~~w~d~~~~~~~~~~~~i~~~l~~~~~~~~~~igl~iL~~lv~Efs  185 (971)
                      .||+.+++.+.+    .++-++++++.+++.|++..|++    +|+++++.+.+.+++ +++.....|+.+|..++.++.
T Consensus        85 ~Ik~~ll~~l~~----~~~~ir~~l~~~i~~I~~~d~p~----~Wp~ll~~l~~~l~s-~~~~~~~~~L~~l~~i~k~~~  155 (959)
T d1wa5c_          85 LIKKEIVPLMIS----LPNNLQVQIGEAISSIADSDFPD----RWPTLLSDLASRLSN-DDMVTNKGVLTVAHSIFKRWR  155 (959)
T ss_dssp             HHHHHHHHHHHH----SCHHHHHHHHHHHHHHHHHHSTT----TCTTHHHHHHTTCCS-SCTTHHHHHHHHHHHHHGGGT
T ss_pred             HHHHHHHHHHhC----CcHHHHHHHHHHHHHHHHHhCcc----ccHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHH
Confidence            999999998864    34679999999999999999987    498999999999975 677888899999999999986


Q ss_pred             CC
Q 002082          186 PS  187 (971)
Q Consensus       186 ~~  187 (971)
                      ..
T Consensus       156 ~~  157 (959)
T d1wa5c_         156 PL  157 (959)
T ss_dssp             TS
T ss_pred             hh
Confidence            53

PyMOL of d1wa5c_

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure