Citrus Sinensis ID: 002084

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------97

MQMDLQIKVAQAVHVLNHDTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQSAAKDALLNALLVAAKRFSSGPPQLLTQICLALSALILRAVEHGKPIEKLFYSLQNLQSQDNGNMAVLEMLTVLPEEVIDSQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQGSLAAHPLLNFVFNSLQVQSSFDVAIEVLVELVGRHEGLPQALLCRVPFLKELLLLPALTDGDEKVIGGLACLMSEIGQAAPSLIVEASPEALALADALLSCVAFPSEDWEIADSTLQFWSTLASYILGLDASIAKNKKHVEDMFFSVFSALLDALLLRAQVDESSFNDDGMVDLPDGLVQFRMNLVELLVDICQLLRSATFIQKVFFGSWGSANVPIPWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISAFQTNARPLLLFLAAGISEAVSSNACASALRKICEDASALIDEPSNLEILMWIGEALEKRHLPLEDEEEVVGAISLILGSVSNKELKNNLLARLLSSSYEAIGKLIDGDNNHSLIHNPATYTQILSSATRGLYRMGTVFSHLPVPLPTNPAGDDPIFALLRVFWPMLEKLFRSEHMENGNLSTAACRALSLAIQSSGQHFVTLLPQVLDCLSTNFVSFQNHECYIRTASVVIEEFGHKDEYGPLFVTTFERFSQAASVRALNSSYICDQEPDLVEAYTNFASTFVRTSRKEVLAASGALLEVSFQKAAICCTAMHRGAALAAMSYLSCFLEECLASLLGYTTSIPEGSFNAMAIQVISHSGEGLVSNVVYALLGVSAMSRVHKCATILQQLAAICSISERTSGKAILSWESLQGWLHSAVSLFLILIGFGLQLQTHPSGFLFLQFQIT

ccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHccHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHcccccHHHHHHHHHHHcHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHcccccccccccHHHHHcHHHHHHHHcccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcccHHHcHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHcccccccccccEEEEEEcc

ccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHcHHHccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHcccccccccHHHHHHHHHccHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHccccccccHHHHHccHHHHHHHHHHcccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHccccccHHHcccHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHcccHEEccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHcHHHHHHHHHHHHHcccHHcHHHHHHHHHHHHHHccHcccccccccccHHHHHHHHHHHHHHHHHHHHcccccccccccEEEEEEEEc

MQMDLQIKVAQAVHVLNHDTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQSAAKDALLNALLVAAKrfssgppqLLTQICLALSALILRAVEHGKPIEKLFYSLQnlqsqdngNMAVLEMLTVLpeevidsqasdcnissaHRSQYGQELLSHTPMVVEFLMQQsdkrfdggvpvqlhdRNRKILRCLLSWVRAGCfteisqgslaahplLNFVFNSLQVQSSFDVAIEVLVELVgrheglpqallcRVPFLKELlllpaltdgdekVIGGLACLMSEIGQAAPSLIVEASPEALALADALLScvafpsedweiADSTLQFWSTLASYILGLDASIAKNKKHVEDMFFSVFSALLDALLLRAQvdessfnddgmvdlpdGLVQFRMNLVELLVDICQLLRSATFIQKVFfgswgsanvpipwkeVETKLFALNVVSEVVlqegqafdfSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISAFQTNARPLLLFLAAGISEAVSSNACASALRKICEDAsalidepsnLEILMWIGEALekrhlpledeeEVVGAISLILGSVSNKELKNNLLARLLSSSYEAIGKLidgdnnhslihnpaTYTQILSSATRGLYRmgtvfshlpvplptnpagddpIFALLRVFWPMLEKLFRSehmengnlSTAACRALSLAIQSSGQHFVTLLPQVLDCLSTnfvsfqnhecyIRTASVVIEefghkdeygplfVTTFERFSQAASVRALNssyicdqepDLVEAYTNFASTFVRTSRKEVLAASGALLEVSFQKAAICCTAMHRGAALAAMSYLSCFLEECLASLLGyttsipegsfNAMAIQVISHSGEGLVSNVVYALLGVSAMSRVHKCATILQQLAAICSISERTSGKAILSWESLQGWLHSAVSLFLILIGFglqlqthpsgflFLQFQIT

MQMDLQIKVAQAVHVLNHDTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQSAAKDALLNALLVAAKRFSSGPPQLLTQICLALSALILRAVEHGKPIEKLFYSLQNLQSQDNGNMAVLEMLTVLPEEVIDSQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQGSLAAHPLLNFVFNSLQVQSSFDVAIEVLVELVGRHEGLPQALLCRVPFlkellllpalTDGDEKVIGGLACLMSEIGQAAPSLIVEASPEALALADALLSCVAFPSEDWEIADSTLQFWSTLASYILGLDASIAKNKKHVEDMFFSVFSALLDALLLRAQVDESSFNDDGMVDLPDGLVQFRMNLVELLVDICQLLRSATFIQKVFFGSWGSANVPIPWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISAFQTNARPLLLFLAAGISEAVSSNACASALRKICEDASALIDEPSNLEILMWIGEALEKRHLPLEDEEEVVGAISLILGSVSNKELKNNLLARLLSSSYEAIGKLIDGDNNHSLIHNPATYTQILSSATRGLYRMGTVFSHLPVPLPTNPAGDDPIFALLRVFWPMLEKLFRSEHMENGNLSTAACRALSLAIQSSGQHFVTLLPQVLDCLSTNFVSFQNHECYIRTASVVIEEFGHKDEYGPLFVTTFERFSQAASVRALNSSYICDQEPDLVEAYTNFASTFVRTSRKEVLAASGALLEVSFQKAAICCTAMHRGAALAAMSYLSCFLEECLASLLGYTTSIPEGSFNAMAIQVISHSGEGLVSNVVYALLGVSAMSRVHKCATILQQLAAICSISERTSGKAILSWESLQGWLHSAVSlfliligfglqlqTHPSGFLFLQFQIT

*****QIKVAQAVHVLNHDTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQSAAKDALLNALLVAAKRFSSGPPQLLTQICLALSALILRAVEHGKPIEKLFYSLQNLQSQDNGNMAVLEMLTVLPEEVID***************YGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQGSLAAHPLLNFVFNSLQVQSSFDVAIEVLVELVGRHEGLPQALLCRVPFLKELLLLPALTDGDEKVIGGLACLMSEIGQAAPSLIVEASPEALALADALLSCVAFPSEDWEIADSTLQFWSTLASYILGLDASIAKNKKHVEDMFFSVFSALLDALLLRAQVDESSFNDDGMVDLPDGLVQFRMNLVELLVDICQLLRSATFIQKVFFGSWGSANVPIPWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISAFQTNARPLLLFLAAGISEAVSSNACASALRKICEDASALIDEPSNLEILMWIGEALEKRHLPLEDEEEVVGAISLILGSVSNKELKNNLLARLLSSSYEAIGKLIDGDNNHSLIHNPATYTQILSSATRGLYRMGTVFSHLPVPLPTNPAGDDPIFALLRVFWPMLEKLFRSEHMENGNLSTAACRALSLAIQSSGQHFVTLLPQVLDCLSTNFVSFQNHECYIRTASVVIEEFGHKDEYGPLFVTTFERFSQAASVRALNSSYICDQEPDLVEAYTNFASTFVRTSRKEVLAASGALLEVSFQKAAICCTAMHRGAALAAMSYLSCFLEECLASLLGYTTSIPEGSFNAMAIQVISHSGEGLVSNVVYALLGVSAMSRVHKCATILQQLAAICSISERTSGKAILSWESLQGWLHSAVSLFLILIGFGLQLQTHPSGFLFLQFQ**

***DLQIKVAQAVHVLNHD*****RVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQSAAKDALLNALLVAAKRFSSGPPQLLTQICLALSALILRAVEHGKPIEKLFYSLQNLQSQDNGNMAVLEMLTVLPEEVIDSQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQGSLAAHPLLNFVFNSLQVQSSFDVAIEVLVELVGRHEGLPQALLCRVPFLKELLLLPALTDGDEKVIGGLACLMSEIGQAAPSLIVEASPEALALADALLSCVAFPSEDWEIADSTLQFWSTLASYILGLDAS*****KHVEDMFFSVFSALLDALLLRAQVDESSFNDDGMVDLPDGLVQFRMNLVELLVDICQLLRSATFIQKVFFGSW***N**IPWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISAFQTNARPLLLFLAAGISEAVSSNACASALRKICEDASALIDEPSNLEILMWIGEALEKRHLPLEDEEEVVGAISLILGSVSNKELKNNLLARLLSSSYEAIGKLID************TYTQILSSATRGLYRMGTVFSHLPVPLPTNPAGDDPIFALLRVFWPMLEKLFRSEHMENGNLSTAACRALSLAIQSSGQHFVTLLPQVLDCLSTNFVSFQNHECYIRTASVVIEEFGHKDEYGPLFVTTFERFSQAASVRALNSSYICDQEPDLVEAYTNFASTFVRTSRKEVLAASGALLEVSFQKAAICCTAMHRGAALAAMSYLSCFLEECLASLL*****IPEGSFNAMAIQVISHSGEGLVSNVVYALLGVSAMSRVHKCATILQQLAAICSISERTSGKAILSWESLQGWLHSAVSLFLILIGFGLQLQTHPSGFLFLQFQIT

**MDLQIKVAQAVHVLNHDTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQSAAKDALLNALLVAAKRFSSGPPQLLTQICLALSALILRAVEHGKPIEKLFYSLQNLQSQDNGNMAVLEMLTVLPEEVIDSQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQGSLAAHPLLNFVFNSLQVQSSFDVAIEVLVELVGRHEGLPQALLCRVPFLKELLLLPALTDGDEKVIGGLACLMSEIGQAAPSLIVEASPEALALADALLSCVAFPSEDWEIADSTLQFWSTLASYILGLDASIAKNKKHVEDMFFSVFSALLDALLLRAQVDESSF*DDGMVDLPDGLVQFRMNLVELLVDICQLLRSATFIQKVFFGSWGSANVPIPWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISAFQTNARPLLLFLAAGISEAVSSNACASALRKICEDASALIDEPSNLEILMWIGEALEKRHLPLEDEEEVVGAISLILGSVSNKELKNNLLARLLSSSYEAIGKLIDGDNNHSLIHNPATYTQILSSATRGLYRMGTVFSHLPVPLPTNPAGDDPIFALLRVFWPMLEKLFRSEHMENGNLSTAACRALSLAIQSSGQHFVTLLPQVLDCLSTNFVSFQNHECYIRTASVVIEEFGHKDEYGPLFVTTFERFSQAASVRALNSSYICDQEPDLVEAYTNFASTFVRTSRKEVLAASGALLEVSFQKAAICCTAMHRGAALAAMSYLSCFLEECLASLLGYTTSIPEGSFNAMAIQVISHSGEGLVSNVVYALLGVSAMSRVHKCATILQQLAAICSISERTSGKAILSWESLQGWLHSAVSLFLILIGFGLQLQTHPSGFLFLQFQIT

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		969	2.2.26 [Sep-21-2011]
Q6P2B1		923	Transportin-3 OS=Mus musc	yes	no	0.825	0.866	0.228	6e-33
Q9Y5L0		923	Transportin-3 OS=Homo sap	yes	no	0.786	0.825	0.229	8e-33
Q9USZ2		955	Uncharacterized protein C	yes	no	0.708	0.719	0.248	6e-23
A7YWD2		963	Importin-13 OS=Bos taurus	no	no	0.724	0.728	0.213	5e-19
Q8K0C1		963	Importin-13 OS=Mus muscul	no	no	0.854	0.859	0.206	1e-18
O94829		963	Importin-13 OS=Homo sapie	no	no	0.854	0.859	0.206	4e-18
Q5R974		963	Importin-13 OS=Pongo abel	no	no	0.850	0.855	0.205	4e-18
Q9JM04		963	Importin-13 OS=Rattus nor	no	no	0.853	0.858	0.206	3e-17
Q99189		972	mRNA transport regulator	yes	no	0.524	0.522	0.223	7e-16
Q5ZIC8		958	Importin-13 OS=Gallus gal	no	no	0.849	0.859	0.215	2e-14

>sp\|Q6P2B1\|TNPO3_MOUSE Transportin-3 OS=Mus musculus GN=Tnpo3 PE=1 SV=1	Back alignment and function desciption

 Score =  143 bits (361), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 209/914 (22%), Positives = 383/914 (41%), Gaps = 114/914 (12%)

Query: 9   VAQAVHVLNHDTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQ 68
           V QAV  L HD +   +  A+ WL + Q++  AWEI+  +L   RQ    D E  +FAAQ
Sbjct: 11  VYQAVQALYHDPDPSGKERASFWLGELQRSVHAWEISDQLLQI-RQ----DVESCYFAAQ 65

Query: 69  ILKRKIQNEGYYLQSAAKDALLNALLVAAKRFSSGPPQLLTQICLALSALILRAVEHGKP 128
            +K KIQ   Y L + +  +L ++LL   +      P ++TQ+ LA++ L L+       
Sbjct: 66  TMKMKIQTSFYELPTDSHASLRDSLLTHIQNLKDLSPVIVTQLALAIADLALQMPSWKGC 125

Query: 129 IEKLFYSLQNLQSQDNGNMA-VLEMLTVLPEEVIDSQASDCNISSAHRSQYGQELLSHTP 187
           ++ L     N    D  ++  +LE+LTVLPEEV    +    I +  R++  ++L  ++ 
Sbjct: 126 VQTLVEKYSN----DVTSLPFLLEILTVLPEEV---HSRSLRIGANRRTEIIEDLAFYSS 178

Query: 188 MVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQGSLAAHPLLNFVF 247
            VV  LM   +K    G   ++     K+ RCL SW   G    +    +A + LL  +F
Sbjct: 179 TVVSLLMTCVEK---AGTDEKML---MKVFRCLGSWFNLGV---LDSNFMANNKLLALLF 229

Query: 248 NSLQV--------QSSFDVAIEVLVELVGRHEGLPQAL-LCRVPFLKELLLLPALTDGDE 298
             LQ         +++ D     L  +      LP A+ L +     E     A+   D 
Sbjct: 230 EVLQQDKTSSNLHEAASDCVCSALYAIENVETNLPLAMQLFQGVLTLETAYHMAVAREDL 289

Query: 299 KVIGGLACLMSEIGQAAPSLIVEASPEALA---LADALLSCVAFPSEDWEIADSTLQFWS 355
             +     + +E+ +     IV    + L      + LL C   P   +E+ + +  FW 
Sbjct: 290 DKVLNYCRIFTELCETFLEKIVCTPGQGLGDLRTLELLLICAGHPQ--YEVVEISFNFWY 347

Query: 356 TLASYILGLDASIAKNKKHVEDMFFSVFSALLDALLLRAQVDESSFNDDGMVDLPDGLVQ 415
            L  ++         N + +  +F +    LL AL    Q++    + +G+ +  D   +
Sbjct: 348 RLGEHL------YKTNDEVIHSIFKAYIQRLLHALARHCQLEP---DHEGVPEETDDFGE 398

Query: 416 FRMNLVELLVDICQLLRSATFIQKVFFGSWGSANVPIPWKEVETKLFALNVVSEVVLQEG 475
           FRM + +L+ D+  L+ S     ++ + +    N   PW+  E  LF +  +++ V  E 
Sbjct: 399 FRMRVSDLVKDLIFLIGSMECFAQL-YSTLKEGNP--PWEVTEAVLFIMAAIAKSVDPEN 455

Query: 476 QAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLA-DVIGSYSKWISAFQTNARPLLLFL 534
                 V+  +V          L   +H   R  + +++G  S+ +        P+L +L
Sbjct: 456 NPTLVEVLEGVV---------HLPETVHTAVRYTSIELVGEMSEVVDRNPQFLDPVLGYL 506

Query: 535 AAGISEAVSSNACASALRKICEDASALIDEPSNLEILMWIGEALEKRHLPLEDEEEVVGA 594
             G+ E   ++A A A+  IC      + +  N   L+ I  +L+   L  E    ++  
Sbjct: 507 MKGLCEKPLASAAAKAIHNICSVCRDHMAQHFN--GLLEIAHSLDSFMLSPEAAVGLLKG 564

Query: 595 ISLILGSVSNKELKNNLLARLLSSSYEAIGKLIDGDNNHSLIHNPATYTQILSSATRGLY 654
            +L+L  +   ++    L+ L S    A+ KL+  + ++ +  +P  +          L 
Sbjct: 565 TALVLARLPLDKI-TECLSELCSVQVMALKKLLSQEPSNGISSDPTVF----------LD 613

Query: 655 RMGTVFSHLPVPLPTNPAGDD----PIFALLRVFWPMLEKLFRSEHMENGNLSTAACRAL 710
           R+  +F H      TNP  ++    P   +++  WP+L +   ++H  +  +    CR L
Sbjct: 614 RLAVIFRH------TNPIVENGQTHPCQKVIQEIWPVLSETL-NKHRADNRIVERCCRCL 666

Query: 711 SLAIQSSGQHFVTLLPQVLDCLSTNFVSFQNHECYIRTASVVIEEFGHK--------DEY 762
             A++  G+    LL Q L     N      H C++   S++++E+G +        D  
Sbjct: 667 RFAVRCVGKGSAALL-QPLVTQMVNVYHVHQHSCFLYLGSILVDEYGMEEGCRQGLLDML 725

Query: 763 GPLFVTTFERFSQAASVRALNSSYICDQEPDLVEAYTNFASTFVRTSRKEVLAASGALLE 822
             L + TF+   Q   ++           PD V+     A+ F++ S   +L +    + 
Sbjct: 726 QALCIPTFQLLEQQNGLQ---------NHPDTVDDLFRLATRFIQRSPVTLLRSQ---VV 773

Query: 823 VSFQKAAICCTAM-HRGAALAAMSYLSCFLEECLASLLGYTTSIPEGSF---NAMAIQVI 878
           +   + AI  T + HR A  + M +L   +   +A       +  E  F     +  QV+
Sbjct: 774 IPILQWAIASTTLDHRDANSSVMRFLRDLIHTGVA-------NDHEEDFELRKELIGQVM 826

Query: 879 SHSGEGLVSNVVYA 892
           S  G+ LVS +++ 
Sbjct: 827 SQLGQQLVSQLLHT 840

Seems to function in nuclear protein import as nuclear transport receptor. In vitro, mediates the nuclear import of splicing factor SR proteins RBM4, SFRS1 and SFRS2, by recognizing phosphorylated RS domains.
Mus musculus (taxid: 10090)

>sp\|Q9Y5L0\|TNPO3_HUMAN Transportin-3 OS=Homo sapiens GN=TNPO3 PE=1 SV=3	Back alignment and function description

>sp\|Q9USZ2\|YNR7_SCHPO Uncharacterized protein C11G11.07 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC11G11.07 PE=4 SV=2	Back alignment and function description

>sp\|A7YWD2\|IPO13_BOVIN Importin-13 OS=Bos taurus GN=IPO13 PE=2 SV=1	Back alignment and function description

>sp\|Q8K0C1\|IPO13_MOUSE Importin-13 OS=Mus musculus GN=Ipo13 PE=2 SV=1	Back alignment and function description

>sp\|O94829\|IPO13_HUMAN Importin-13 OS=Homo sapiens GN=IPO13 PE=1 SV=3	Back alignment and function description

>sp\|Q5R974\|IPO13_PONAB Importin-13 OS=Pongo abelii GN=IPO13 PE=2 SV=1	Back alignment and function description

>sp\|Q9JM04\|IPO13_RAT Importin-13 OS=Rattus norvegicus GN=Ipo13 PE=2 SV=1	Back alignment and function description

>sp\|Q99189\|MTR10_YEAST mRNA transport regulator MTR10 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MTR10 PE=1 SV=1	Back alignment and function description

>sp\|Q5ZIC8\|IPO13_CHICK Importin-13 OS=Gallus gallus GN=IPO13 PE=2 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		969
359488588		1015	PREDICTED: transportin-3-like [Vitis vin	0.966	0.923	0.807	0.0
255543441		1020	Transportin-3, putative [Ricinus communi	0.965	0.917	0.802	0.0
449501328		1029	PREDICTED: transportin-3-like [Cucumis s	0.966	0.910	0.775	0.0
224131372		1008	predicted protein [Populus trichocarpa]	0.954	0.917	0.776	0.0
356561051		1011	PREDICTED: transportin-3-like [Glycine m	0.966	0.926	0.754	0.0
449455816		1031	PREDICTED: LOW QUALITY PROTEIN: transpor	0.964	0.906	0.759	0.0
18391456		1005	exportin 1-like protein domain-containin	0.956	0.922	0.668	0.0
297849682		1007	hypothetical protein ARALYDRAFT_471447 [	0.956	0.920	0.670	0.0
15215746		1005	At1g12930/F13K23_14 [Arabidopsis thalian	0.956	0.922	0.667	0.0
8698739		974	Contains similarity to transportin-SR fr	0.924	0.919	0.643	0.0

>gi\|359488588\|ref\|XP_002276597.2\| PREDICTED: transportin-3-like [Vitis vinifera] gi\|296082227\|emb\|CBI21232.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

 Score = 1521 bits (3937), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 762/944 (80%), Positives = 838/944 (88%), Gaps = 7/944 (0%)

Query: 3   MDLQIKVAQAVHVLNHDTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQ----SFLT 58
           M+LQIKVAQAVHVLNHD++SCNRVAANQWLVQFQQTD AW++ATSILTSD      SFL+
Sbjct: 1   MELQIKVAQAVHVLNHDSQSCNRVAANQWLVQFQQTDLAWDVATSILTSDHHRHHHSFLS 60

Query: 59  DFEVEFFAAQILKRKIQNEGYYLQSAAKDALLNALLVAAKRFSSGPPQLLTQICLALSAL 118
           DFEVEFFAAQILKRKIQNEGYYLQ  AKDALLNALL+AAKRFSSGPPQLLTQICLALSAL
Sbjct: 61  DFEVEFFAAQILKRKIQNEGYYLQLGAKDALLNALLLAAKRFSSGPPQLLTQICLALSAL 120

Query: 119 ILRAVEHGKPIEKLFYSLQNLQSQDNGNMAVLEMLTVLPEEVIDSQASDCNISSAHRSQY 178
           I+R+ EH KPIE+LFYSLQNLQSQD+ N+AVLEMLTVLPEE++++Q  DCNISS  R QY
Sbjct: 121 IIRSTEHRKPIEQLFYSLQNLQSQDDSNIAVLEMLTVLPEEIVENQNIDCNISSDRRCQY 180

Query: 179 GQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQGSLA 238
           GQELLSHT  V+EFL+QQS+K FDGG+  QLH+RNRKILRCLLSWVRAGCF EI  G L 
Sbjct: 181 GQELLSHTTRVLEFLLQQSEKSFDGGI--QLHERNRKILRCLLSWVRAGCFAEIPPGLLP 238

Query: 239 AHPLLNFVFNSLQVQSSFDVAIEVLVELVGRHEGLPQALLCRVPFLKELLLLPALTDGDE 298
            HPLLNFV+NSLQV S+FD+AIEVL+ELVGRHEGLPQ LLCR+ FLKE+LLLPAL +GDE
Sbjct: 239 GHPLLNFVYNSLQVSSTFDLAIEVLIELVGRHEGLPQVLLCRIQFLKEVLLLPALNNGDE 298

Query: 299 KVIGGLACLMSEIGQAAPSLIVEASPEALALADALLSCVAFPSEDWEIADSTLQFWSTLA 358
           KVI GLACLMSEIGQAAPSLIVEAS EA  LADALLSCVAFPSEDWEIAD+TLQFWS+LA
Sbjct: 299 KVISGLACLMSEIGQAAPSLIVEASAEAHLLADALLSCVAFPSEDWEIADTTLQFWSSLA 358

Query: 359 SYILGLDASIAKNKKHVEDMFFSVFSALLDALLLRAQVDESSFNDD-GMVDLPDGLVQFR 417
           SYILGLD+   KNKK VEDMF  VFSALLDA LLRAQVD+S+FND+ G +DLPDGLV FR
Sbjct: 359 SYILGLDSDSGKNKKDVEDMFSPVFSALLDAFLLRAQVDDSTFNDESGTLDLPDGLVHFR 418

Query: 418 MNLVELLVDICQLLRSATFIQKVFFGSWGSANVPIPWKEVETKLFALNVVSEVVLQEGQA 477
           MNLVELLVDICQLL+S TFIQK+FFG W S N+PIPW++VETK+FALNVV+EVVLQEGQ 
Sbjct: 419 MNLVELLVDICQLLKSTTFIQKLFFGGWVSINLPIPWRDVETKMFALNVVAEVVLQEGQT 478

Query: 478 FDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISAFQTNARPLLLFLAAG 537
           FDFSVIMQL+ +LS+   ++LKGFM IVYRSLADV+GSYSK IS+F+TNARPLLLFLA G
Sbjct: 479 FDFSVIMQLLTILSSMAPDKLKGFMRIVYRSLADVVGSYSKLISSFRTNARPLLLFLATG 538

Query: 538 ISEAVSSNACASALRKICEDASALIDEPSNLEILMWIGEALEKRHLPLEDEEEVVGAISL 597
           ISE +SS+ACASALRK CEDASA+I EPSNLEILMWIGE LEKRHLPLEDEEEV+ AI+L
Sbjct: 539 ISEPLSSSACASALRKFCEDASAVICEPSNLEILMWIGEGLEKRHLPLEDEEEVISAITL 598

Query: 598 ILGSVSNKELKNNLLARLLSSSYEAIGKLIDGDNNHSLIHNPATYTQILSSATRGLYRMG 657
           IL SV NKELKNNLLARLLSSSYEAIGKLI  ++ HSL  NPA YTQIL+SA RGLYRMG
Sbjct: 599 ILSSVPNKELKNNLLARLLSSSYEAIGKLIGEEDKHSLKQNPAAYTQILTSAVRGLYRMG 658

Query: 658 TVFSHLPVPLPTNPAGDDPIFALLRVFWPMLEKLFRSEHMENGNLSTAACRALSLAIQSS 717
           TVFSHL  PL   P+ DDPI  LL VFWP+LEKLFRSEHMENG+LS AACRALS A+QSS
Sbjct: 659 TVFSHLAGPLSIGPSPDDPILVLLSVFWPVLEKLFRSEHMENGSLSAAACRALSQAVQSS 718

Query: 718 GQHFVTLLPQVLDCLSTNFVSFQNHECYIRTASVVIEEFGHKDEYGPLFVTTFERFSQAA 777
           GQHFVTLLP+VLDCLS NFV FQ+HECYIRTASVV+EEFGHK+EYGPLF++ FERF+ AA
Sbjct: 719 GQHFVTLLPEVLDCLSKNFVLFQSHECYIRTASVVLEEFGHKEEYGPLFISAFERFTYAA 778

Query: 778 SVRALNSSYICDQEPDLVEAYTNFASTFVRTSRKEVLAASGALLEVSFQKAAICCTAMHR 837
           SV ALNSSYICDQEPDLVEAYTNF STFVR S KEVLAASG+LLEVSFQKAAICCTAMHR
Sbjct: 779 SVMALNSSYICDQEPDLVEAYTNFTSTFVRGSPKEVLAASGSLLEVSFQKAAICCTAMHR 838

Query: 838 GAALAAMSYLSCFLEECLASLLGYTTSIPEGSFNAMAIQVISHSGEGLVSNVVYALLGVS 897
           GAALAAMSY+SCFLE  L SLL   T IPEGSF+A+AIQVISHSGEGLVSNVVYALLGVS
Sbjct: 839 GAALAAMSYMSCFLEVGLISLLESMTCIPEGSFSAVAIQVISHSGEGLVSNVVYALLGVS 898

Query: 898 AMSRVHKCATILQQLAAICSISERTSGKAILSWESLQGWLHSAV 941
           AMSRVHK ATILQQLAA+CS+SE T+ KAIL WESL  WL  AV
Sbjct: 899 AMSRVHKSATILQQLAAVCSLSEGTTCKAILCWESLHEWLRLAV 942

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|255543441\|ref\|XP_002512783.1\| Transportin-3, putative [Ricinus communis] gi\|223547794\|gb\|EEF49286.1\| Transportin-3, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|449501328\|ref\|XP_004161339.1\| PREDICTED: transportin-3-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|224131372\|ref\|XP_002321068.1\| predicted protein [Populus trichocarpa] gi\|222861841\|gb\|EEE99383.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|356561051\|ref\|XP_003548799.1\| PREDICTED: transportin-3-like [Glycine max]	Back alignment and taxonomy information

>gi\|449455816\|ref\|XP_004145646.1\| PREDICTED: LOW QUALITY PROTEIN: transportin-3-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|18391456\|ref\|NP_563920.1\| exportin 1-like protein domain-containing protein [Arabidopsis thaliana] gi\|332190829\|gb\|AEE28950.1\| exportin 1-like protein domain-containing protein [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|297849682\|ref\|XP_002892722.1\| hypothetical protein ARALYDRAFT_471447 [Arabidopsis lyrata subsp. lyrata] gi\|297338564\|gb\|EFH68981.1\| hypothetical protein ARALYDRAFT_471447 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|15215746\|gb\|AAK91418.1\| At1g12930/F13K23_14 [Arabidopsis thaliana] gi\|27363440\|gb\|AAO11639.1\| At1g12930/F13K23_14 [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|8698739\|gb\|AAF78497.1\|AC012187_17 Contains similarity to transportin-SR from Homo sapiens gb\|AF145029. ESTs gb\|T46556, gb\|AI993189, gb\|T45501, gb\|AA394463 come from this gene [Arabidopsis thaliana]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		969
TAIR\|locus:2010381		1005	AT1G12930 "AT1G12930" [Arabido	0.956	0.922	0.661	0.0
UNIPROTKB\|F1SMQ0		921	TNPO3 "Uncharacterized protein	0.407	0.428	0.257	4.9e-34
TAIR\|locus:2154159		958	MOS14 "AT5G62600" [Arabidopsis	0.534	0.540	0.255	8.8e-33
UNIPROTKB\|C9J7E5		957	TNPO3 "Uncharacterized protein	0.813	0.823	0.231	1.4e-32
ZFIN\|ZDB-GENE-040426-708		923	tnpo3 "transportin 3" [Danio r	0.402	0.422	0.256	8.4e-31
MGI\|MGI:1196412		923	Tnpo3 "transportin 3" [Mus mus	0.407	0.427	0.257	1.1e-30
UNIPROTKB\|Q9Y5L0		923	TNPO3 "Transportin-3" [Homo sa	0.407	0.427	0.257	2.3e-30
UNIPROTKB\|A5D7C4		923	TNPO3 "TNPO3 protein" [Bos tau	0.407	0.427	0.257	6.2e-30
RGD\|1308938		929	Tnpo3 "transportin 3" [Rattus	0.407	0.425	0.257	1.4e-29
UNIPROTKB\|A7YWD2		963	IPO13 "Importin-13" [Bos tauru	0.742	0.746	0.213	2.7e-29

TAIR\|locus:2010381 AT1G12930 "AT1G12930" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 3149 (1113.6 bits), Expect = 0., P = 0.
 Identities = 622/940 (66%), Positives = 758/940 (80%)

Query:     3 MDLQIKVAQAVHVLNHDTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEV 62
             M+LQ KVA+A+HVLNHD ES NRVAANQWLVQFQ T AAW+++TS+LTS   S    F++
Sbjct:     1 MELQRKVAEAIHVLNHDPESSNRVAANQWLVQFQLTPAAWDVSTSLLTSPIVSL---FDL 57

Query:    63 EFFAAQILKRKIQNEGYYLQSAAKDALLNALLVAAKRFSSGPPQLLTQICLALSALILRA 122
             +FFAAQIL+RKIQNE   LQS AKDALLNALL+AAKR+SSG PQLLTQICLALSAL+L +
Sbjct:    58 QFFAAQILRRKIQNEASNLQSTAKDALLNALLLAAKRYSSGVPQLLTQICLALSALLLHS 117

Query:   123 VEHGKPIEKLFYSLQNLQSQDNGNMAVLEMLTVLPEEVIDSQASDCNISSAHRSQYGQEL 182
               + KP +KL ++LQNLQ+ D+GN+ +LE+LTVLPEE+ D++        +H S   QEL
Sbjct:   118 DPYSKPFDKLMFALQNLQAHDDGNVVLLELLTVLPEEISDTR------HFSHHSDLRQEL 171

Query:   183 LSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQGSLAAHPL 242
             LSHT MV++FL+QQS+ +F    P+  HD NRKILRCLLSWVRAGCF+EI QG++ +HPL
Sbjct:   172 LSHTSMVLDFLLQQSENQFVS--PLYPHDNNRKILRCLLSWVRAGCFSEIPQGAVPSHPL 229

Query:   243 LNFVFNSLQVQSSFDVAIEVLVELVGRHEGLPQALLCRVPFXXXXXXXXXXTDGDEKVIG 302
             LN+VFN+LQ  ++FD+AIEVLVELV RHE LPQ LL +V F           + D K+I 
Sbjct:   230 LNYVFNALQ-GTTFDLAIEVLVELVTRHEDLPQVLLYKVQFLRDTLLKPALINADLKIIS 288

Query:   303 GLACLMSEIGQAAPSLIVEASPEALALADALLSCVAFPSEDWEIADSTLQFWSTLASYIL 362
             GLACLMSEIGQAAP LIVEAS EAL L DA+LSCV FPSEDWEIADST+QFWST A+YIL
Sbjct:   289 GLACLMSEIGQAAPCLIVEASSEALILTDAILSCVTFPSEDWEIADSTVQFWSTFATYIL 348

Query:   363 GLDASIAKNKKHVEDMFFSVFSALLDALLLRAQVDESSFNDDGM-VDLPDGLVQFRMNLV 421
              L  +   ++  V+D F  VFSAL+DAL+LRAQVDE + +D+   +DLPDGL+ FR NL+
Sbjct:   349 SLGGNRQNDRTRVKDTFLPVFSALVDALVLRAQVDEFTSSDESPGLDLPDGLLHFRNNLL 408

Query:   422 ELLVDICQLLRSATFIQKVFFGSWGSANVPIPWKEVETKLFALNVVSEVVLQEGQAFDFS 481
             ELLVDICQLL   TF+ K+FFG   S++V +P +E+E KLFAL  VSE++LQEG+AFDF+
Sbjct:   409 ELLVDICQLLHPTTFVSKLFFGGVPSSSVSMPLREIEAKLFALTAVSEIILQEGEAFDFA 468

Query:   482 VIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISAFQTNARPLLLFLAAGISEA 541
             +IMQLV+  S   S ELKGF+ +VYRSLADV+GSYS+WIS F +NARPLLLFLA GISE 
Sbjct:   469 LIMQLVSAFSVRPSSELKGFISVVYRSLADVVGSYSRWISVFPSNARPLLLFLAGGISEP 528

Query:   542 VSSNACASALRKICEDASALIDEPSNLEILMWIGEALEKRHLPLEDEEEVVGAISLILGS 601
             + S+ACASALRKICEDA A+I E SNL+ILMWIGE LE+  L LEDEEEV+ AI++ILGS
Sbjct:   529 ICSHACASALRKICEDAPAVIQETSNLDILMWIGECLEQWDLTLEDEEEVITAITVILGS 588

Query:   602 VSNKELKNNLLARLLSSSYEAIGKLIDGDNNHSLIHNPATYTQILSSATRGLYRMGTVFS 661
             V+NKEL+N LL +LLSSSY  + KL+D D   S   +PATYT++LSS TRGLYR+GTVFS
Sbjct:   589 VANKELQNKLLTQLLSSSYGVLSKLVDEDAESSGRQSPATYTRMLSSVTRGLYRIGTVFS 648

Query:   662 HLPVPLPTNPAGDDPIFALLRVFWPMLEKLFRSEHMENGNLSTAACRALSLAIQSSGQHF 721
             HL   LP+ P  D PI +LL VFWP+LEKLFRSEHME+G+L+ AACRALS+A+QSSG+HF
Sbjct:   649 HLATSLPSVPVADGPILSLLTVFWPILEKLFRSEHMESGSLAAAACRALSVAVQSSGEHF 708

Query:   722 VTLLPQVLDCLSTNFVSFQNHECYIRTASVVIEEFGHKDEYGPLFVTTFERFSQAASVRA 781
             + LLP VLDCLS NF+SFQ+ ECYIRTA V+ EEF HK+EYG LF+TTFERF+QA+S+  
Sbjct:   709 MLLLPSVLDCLSRNFLSFQSQECYIRTACVIAEEFCHKEEYGSLFITTFERFTQASSLMG 768

Query:   782 LNSSYICDQEPDLVEAYTNFASTFVRTSRKEVLAASGALLEVSFQKAAICCTAMHRGAAL 841
             +NSSYICDQEPDLVEAY NFAS  +R+  KE+L  SG LLE+SF KAAICCTAMHRGAAL
Sbjct:   769 INSSYICDQEPDLVEAYVNFASALIRSCHKELLGTSGTLLEISFHKAAICCTAMHRGAAL 828

Query:   842 AAMSYLSCFLEECLASLLGYTTSIPEGSFNAMAIQVISHSGEGLVSNVVYALLGVSAMSR 901
             AAMSYLS FLE  L+S++    SI +GSF+ +++QV+SH GEGL+SN+VYALLGV+AMSR
Sbjct:   829 AAMSYLSGFLEVSLSSMIETVNSISDGSFSVVSVQVVSHCGEGLLSNLVYALLGVAAMSR 888

Query:   902 VHKCATILQQLAAICSISERTSGKAILSWESLQGWLHSAV 941
             VHKC+TILQQLAAICS+ ERTS K +L W+SLQGWL+SAV
Sbjct:   889 VHKCSTILQQLAAICSLCERTSWKGMLCWKSLQGWLNSAV 928

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB\|F1SMQ0 TNPO3 "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

TAIR\|locus:2154159 MOS14 "AT5G62600" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

UNIPROTKB\|C9J7E5 TNPO3 "Uncharacterized protein" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-040426-708 tnpo3 "transportin 3" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

MGI\|MGI:1196412 Tnpo3 "transportin 3" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

UNIPROTKB\|Q9Y5L0 TNPO3 "Transportin-3" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|A5D7C4 TNPO3 "TNPO3 protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

RGD\|1308938 Tnpo3 "transportin 3" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

UNIPROTKB\|A7YWD2 IPO13 "Importin-13" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		969
pfam08389		147	pfam08389, Xpo1, Exportin 1-like protein	5e-17
smart00913		67	smart00913, IBN_N, Importin-beta N-terminal domain	6e-04

>gnl\|CDD\|219817 pfam08389, Xpo1, Exportin 1-like protein	Back alignment and domain information

 Score = 78.4 bits (194), Expect = 5e-17
 Identities = 42/161 (26%), Positives = 67/161 (41%), Gaps = 15/161 (9%)

Query: 104 PPQLLTQICLALSALILRAVEHGKPIEKLFYSL-QNLQSQDNGNMAVLEMLTVLPEEVID 162
           P  +  ++ LAL+ L  +  E        F  L   L S  +G   +L +L VLPEE+ D
Sbjct: 1   PKFIRNKLALALAELAKQ--EWPSNWPTFFPDLVSLLSSSPSGCELLLRILKVLPEEIFD 58

Query: 163 SQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLS 222
              +   ++   R++    L S  P ++E L+Q  +        +         L+CL S
Sbjct: 59  FSRTP--LTQQRRNRLKDLLRSQMPQILELLLQILENSVSAHSEL-----LSATLKCLGS 111

Query: 223 WVRAGCFTEISQGSLAAHPLLNFVFNSLQVQSSFDVAIEVL 263
           W+       I  G +   PLLN +F  L      + A+E L
Sbjct: 112 WLS-----WIPIGLILNDPLLNLLFQLLSDPDLREAAVECL 147

The sequences featured in this family are similar to a region close to the N-terminus of yeast exportin 1 (Xpo1, Crm1). This region is found just C-terminal to an importin-beta N-terminal domain (pfam03810) in many members of this family. Exportin 1 is a nuclear export receptor that interacts with leucine-rich nuclear export signal (NES) sequences, and Ran-GTP, and is involved in translocation of proteins out of the nucleus. Length = 147

>gnl\|CDD\|197981 smart00913, IBN_N, Importin-beta N-terminal domain	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		969
KOG2022		982	consensus Nuclear transport receptor LGL2 (importi	100.0
KOG2081		559	consensus Nuclear transport regulator [Intracellul	100.0
KOG2021		980	consensus Nuclear mRNA export factor receptor LOS1	100.0
COG5101		1053	CRM1 Importin beta-related nuclear transport recep	100.0
KOG2023		885	consensus Nuclear transport receptor Karyopherin-b	100.0
KOG2020		1041	consensus Nuclear transport receptor CRM1/MSN5 (im	100.0
KOG2171		1075	consensus Karyopherin (importin) beta 3 [Nuclear s	99.97
KOG1241		859	consensus Karyopherin (importin) beta 1 [Nuclear s	99.93
KOG1991		1010	consensus Nuclear transport receptor RANBP7/RANBP8	99.9
COG5215		858	KAP95 Karyopherin (importin) beta [Intracellular t	99.84
KOG1992		960	consensus Nuclear export receptor CSE1/CAS (import	99.7
KOG1410		1082	consensus Nuclear transport receptor RanBP16 (impo	99.65
PF08389		148	Xpo1: Exportin 1-like protein; InterPro: IPR013598	99.62
COG5656		970	SXM1 Importin, protein involved in nuclear import	99.56
KOG2274		1005	consensus Predicted importin 9 [Intracellular traf	99.46
PF08767		319	CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1	99.29
PF03810		77	IBN_N: Importin-beta N-terminal domain; InterPro:	98.68
KOG2171		1075	consensus Karyopherin (importin) beta 3 [Nuclear s	98.6
KOG1993		978	consensus Nuclear transport receptor KAP120 (impor	98.56
KOG0915		1702	consensus Uncharacterized conserved protein [Funct	97.55
COG5657		947	CSE1 CAS/CSE protein involved in chromosome segreg	97.21
KOG2023		885	consensus Nuclear transport receptor Karyopherin-b	96.96
PF08506		370	Cse1: Cse1; InterPro: IPR013713 The exchange of ma	96.74
COG5215		858	KAP95 Karyopherin (importin) beta [Intracellular t	96.72
KOG1824		1233	consensus TATA-binding protein-interacting protein	96.3
PF03378		435	CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: I	94.79
PF03378		435	CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: I	94.62
KOG1824		1233	consensus TATA-binding protein-interacting protein	93.56
KOG0212		675	consensus Uncharacterized conserved protein [Funct	92.76
COG5181		975	HSH155 U2 snRNP spliceosome subunit [RNA processin	90.79
KOG2274		1005	consensus Predicted importin 9 [Intracellular traf	89.99
PRK09687		280	putative lyase; Provisional	89.81
PF02985		31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	89.7
PF08767		319	CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1	87.27
PF12348		228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	85.59
PF12755		97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	85.25
KOG1242		569	consensus Protein containing adaptin N-terminal re	84.83
PF01602		526	Adaptin_N: Adaptin N terminal region; InterPro: IP	84.33
KOG1991		1010	consensus Nuclear transport receptor RANBP7/RANBP8	84.07
PF12348		228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	83.49
KOG0213		1172	consensus Splicing factor 3b, subunit 1 [RNA proce	83.07
PF10508		503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	80.66

>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

Probab=100.00  E-value=1.8e-96  Score=813.81  Aligned_cols=882  Identities=18%  Similarity=0.257  Sum_probs=693.6

Q ss_pred             CCchHHHHHHHHHHHhccCCChHHHHHHHHHHHHHhcChHHHHHHHHhhccCCCCCCccchhHHhhhHHHHHHhhcCcCC
Q 002084            1 MQMDLQIKVAQAVHVLNHDTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYY   80 (969)
Q Consensus         1 ~~~~~~~~v~~ai~~ly~~~d~~~~~~A~~~L~~~Q~s~~aW~~~~~LL~~~~~~~~~~~~v~ffaA~tL~~kI~~~~~~   80 (969)
                      |+.+.+++|+++|..||.+++++.++.+++||++.|+||+||.++++||+.+++     .++|||||.||+.||+++|++
T Consensus         1 md~~~Ia~v~~~v~~lY~~~~~~~~a~~qk~Lq~aq~S~Q~w~~s~~llQ~~k~-----~evqyFGAltL~~ki~~~~e~   75 (982)
T KOG2022|consen    1 MDSDLIATVEELVTTLYSHRNHENDAITQKWLQDAQCSQQGWHFSWQLLQPDKS-----SEVQYFGALTLHDKINTRWEE   75 (982)
T ss_pred             CCchHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhHHHHHHHHHHcCCCch-----hHHHHHhHHHHHHHHHhhhcc
Confidence            777789999999999999999999999999999999999999999999998775     588999999999999999999


Q ss_pred             CChHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHchhc--cCCchHHHHHHHhhcccCC----CcchHHHHHHHh
Q 002084           81 LQSAAKDALLNALLVAAKRFSSGPPQLLTQICLALSALILRAV--EHGKPIEKLFYSLQNLQSQ----DNGNMAVLEMLT  154 (969)
Q Consensus        81 l~~~~~~~Lr~~Ll~~l~~~~~~~~~v~~kL~~aLa~l~l~~~--~W~~~i~~li~~l~~~~~~----~~~~~~lL~~L~  154 (969)
                      .|++++..|+..++..+.+++.||+.|.+|+|.+|+.+.+++.  .||++|.+++..++.+...    ...+.++|+.|+
T Consensus        76 ~~~~~~~qL~~klf~~l~~~~g~~~lVl~kl~~sLasl~l~~~~d~Wp~ai~~vi~~l~~q~~p~v~ad~n~~~~Le~Ls  155 (982)
T KOG2022|consen   76 CPANEAVQLKLKLFLILSRFAGGPKLVLNKLCASLASLILYMVPDLWPTAIQDVIPTLQGQASPLVLADINCEILLEVLS  155 (982)
T ss_pred             CChhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHccccCCchHHHHHHHHhcccCccccchhhHHHHHHHhc
Confidence            9999999999999999999999999999999999999999985  5999999999999864211    124689999999


Q ss_pred             hchhccccccccccCCCHHHHHHHHHHHHhhhhHHHHHHHHhHhhccCCCCCcchhhhHHHHHHHHHHHHHccccccccc
Q 002084          155 VLPEEVIDSQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQ  234 (969)
Q Consensus       155 ~l~EE~~~~~~~~~~l~~~~r~~~~~~l~~~~~~v~~~l~~~l~~~~~~~~~~~~~~~~~~~l~cl~sWi~~~~~~~~~~  234 (969)
                      .+|||..+.   +  ++..+|..++.++......+..++..++....+...+..+-..+..+++|+.+|++|...   +.
T Consensus       156 ~~p~e~q~~---~--l~~t~~~~l~~eLak~~~~v~~l~e~vlr~~~n~t~s~~~~i~~~~a~dCv~~Wi~~i~~---~~  227 (982)
T KOG2022|consen  156 FMPAEFQHV---T--LPLTRRSVLRGELAKFSENVISLLEVVLRGGSNSTSSLINLIFKQAAVDCVEQWIRYISL---TG  227 (982)
T ss_pred             cCcHhhhhc---c--chhHHHHHHHHHHHHHHHHHhHHHHHHHhccccccHHHHHHHhhhHHHHHHHHHHHHhcc---cc
Confidence            999999643   2  677788999999999999999988877766432211001113568999999999997632   32


Q ss_pred             hhhcccchHHHHHhhcCC--CCcHHHHHHHHH---------------HHHhcCC--Chh---HHHHhhhhh-hHHhhh-h
Q 002084          235 GSLAAHPLLNFVFNSLQV--QSSFDVAIEVLV---------------ELVGRHE--GLP---QALLCRVPF-LKELLL-L  290 (969)
Q Consensus       235 ~~i~~~~ll~~~~~~L~~--~~~~~~a~~~l~---------------ei~~~~~--~~~---~~l~~~~~~-l~~~~~-~  290 (969)
                      -  .....+..++..+..  ...++++-+||.               ..+...+  .|.   ..|++...+ +++.-. .
T Consensus       228 ~--~c~~i~~~ll~~l~~s~~~~~~a~~~cmt~~~n~la~~~l~~~v~~i~q~d~~~y~nti~~li~i~~~~l~e~~~~~  305 (982)
T KOG2022|consen  228 M--DCDQITQVLLDVLGQSTEGSYEAAEKCMTIFGNVLADDTLLASVNDIIQPDCEFYRNTITLLISICLGILQEVSGKI  305 (982)
T ss_pred             c--cHHHHHHHHHHHHhhhccccccchhhhcccchhhhccchHHHHHHHhcChHHHhccchHHHHHHHHHHHHHHHHHHH
Confidence            2  223345555555541  122233322221               1111110  122   223333333 222110 0


Q ss_pred             hhhccCc--hhHHhhHHHHHHHHhhhhhHHHHhc------ChhHHHHHHHHHhcccCCCCCchhhh----hhHHHHHHHH
Q 002084          291 PALTDGD--EKVIGGLACLMSEIGQAAPSLIVEA------SPEALALADALLSCVAFPSEDWEIAD----STLQFWSTLA  358 (969)
Q Consensus       291 ~~~~~~d--~d~~~~l~~l~~~~~e~~~~~l~~~------~~~~~~ll~~lL~~~~~p~~d~~v~~----~~~~FW~~l~  358 (969)
                      ....+.|  +|....++++++..+|++.+.+.++      ++.+.++++.|+.|+++||+ |+|-|    .|++|||+|+
T Consensus       306 ~~~e~~d~~~e~i~~~~~i~v~~~En~l~~lid~~~~g~~~e~v~rlv~vll~~t~~PG~-ypveE~~S~~~l~FW~tL~  384 (982)
T KOG2022|consen  306 QEEENADASEEEIVTFLAITVSSVENHLPTLIDCAAQGEQSELVIRLVQVLLVLTNFPGQ-YPVEEIVSDRTLIFWYTLQ  384 (982)
T ss_pred             HHHhCCCchhHHHHHHHHHHHHHHhcccHHHHHHHhhcchHHHHHHHHHHHHHHhCCCCC-ccHHHHHhHHHHHHHHHHH
Confidence            1334555  7788899999999999999998764      23457999999999999994 66544    6999999999


Q ss_pred             HHhhccchhhhhhhhhhhhhhH-HHHHHHHHHHHHHccCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHhcCcHH--
Q 002084          359 SYILGLDASIAKNKKHVEDMFF-SVFSALLDALLLRAQVDESSFNDDGMVDLPDGLVQFRMNLVELLVDICQLLRSAT--  435 (969)
Q Consensus       359 e~l~~~~~~~~~~~~~~~~~~~-~~~~~l~~~l~~k~~~p~~~~~~~~~~~e~d~f~~fR~~~~d~l~~~~~ilg~~~--  435 (969)
                      |++..+..++.   +.....|+ |+|.+|++++++|+.+|.++....|..|+++.|++||++++|+++++|.++|+..  
T Consensus       385 dei~~~~~e~~---~~~~~i~~~qIy~qlvei~l~K~~~Ps~e~~~~W~S~s~e~F~~YR~diSD~~~~~Y~ilgd~ll~  461 (982)
T KOG2022|consen  385 DEIMQTINETQ---QIKKQILSQQIYAQLVEILLKKLALPSKEIWLSWSSDSREQFESYRKDISDLLMSSYSILGDGLLD  461 (982)
T ss_pred             HHHHHhhhccC---CcchhHHHHHHHHHHHHHHHHHhcCCCHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence            99987655442   33445565 9999999999999999998766679999999999999999999999999999542  


Q ss_pred             HHHHHHhhhhcCC-CCCCChhHhHHHHHHHHhhhhccccCCcccchhHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHH
Q 002084          436 FIQKVFFGSWGSA-NVPIPWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIG  514 (969)
Q Consensus       436 ~l~~l~~~~~~~~-~~~~~W~~~Ea~Lf~l~~iae~~~~~~~~~~l~~i~~ll~~l~~~~~~~~~~~~~v~~~t~~~lig  514 (969)
                      ++...++++..+. ..+.+|+..|+|+|++.++++.+..+++    +++..++...++.+....+  +.+.. |++.+||
T Consensus       462 ~L~~~l~q~~aa~d~~p~s~~~tEaci~~~~sva~~~~~t~~----~~i~rl~~~~asik~S~~n--~ql~~-Tss~~ig  534 (982)
T KOG2022|consen  462 FLIDTLEQALAAGDEDPDSLNRTEACIFQFQSVAEYLGETES----TWIPRLFETSASIKLSAPN--PQLLS-TSSDLIG  534 (982)
T ss_pred             HHHHHHHHhhhccCCCchHHHHHHHHHHHHHHHHhhcCcchh----HHHHHHHHhccccccccCC--hhHHH-HHHHHHH
Confidence            3333344443332 2456799999999999999999986554    6777777776654322110  11333 5579999


Q ss_pred             hhHHHHHhChhchHHHHHHHHHhcccCchhHHHHHHHHHHHHHhhcccCCCccHHHHHHHH-HHHHhcCCChhhHHHHHH
Q 002084          515 SYSKWISAFQTNARPLLLFLAAGISEAVSSNACASALRKICEDASALIDEPSNLEILMWIG-EALEKRHLPLEDEEEVVG  593 (969)
Q Consensus       515 ~ys~wl~~~p~~L~~~l~~l~~~l~~~~~~~~Aa~al~~lc~~c~~~l~~~~~~~~l~~~~-~~l~~~~l~~~~~~~l~e  593 (969)
                      .|+.|++.||.||.+.++.|++|+++++....|..++++||++|+.+|.+  +.+.|.... +.+.+.+..+.+|.+++.
T Consensus       535 s~s~~l~e~P~~ln~sl~~L~~~Lh~sk~s~q~i~tl~tlC~~C~~~L~p--y~d~~~a~~~e~l~~~~~~~S~~~klm~  612 (982)
T KOG2022|consen  535 SLSNWLGEHPMYLNPSLPLLFQGLHNSKESEQAISTLKTLCETCPESLDP--YADQFSAVCYEVLNKSNAKDSDRLKLMK  612 (982)
T ss_pred             HHHHHHhcCCcccCchHHHHHHHhcCchHHHHHHHHHHHHHHhhhhhCch--HHHHHHHHHHHHhcccccCchHHHHHHH
Confidence            99999999999999999999999999988888899999999999999953  777666655 555668888999999999


Q ss_pred             HHHHHhccCCchHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCchhHHHHHHHHHHHHHhhhhhcccccccCCCC---
Q 002084          594 AISLILGSVSNKELKNNLLARLLSSSYEAIGKLIDGDNNHSLIHNPATYTQILSSATRGLYRMGTVFSHLPVPLPTN---  670 (969)
Q Consensus       594 ai~~ii~~lp~~~~~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~l~~L~~i~~~l~~~~~~~---  670 (969)
                      +||+|++.+.+++ +..|+.++++|++++++.++....+     +++..   + +..-.+.+++++|.++..+.+.-   
T Consensus       613 sIGyvls~~~pEe-~~kyl~~lin~il~qle~~l~~~i~-----~~e~~---l-~~~~~l~~iS~LftSL~~~~~~~d~d  682 (982)
T KOG2022|consen  613 SIGYVLSRLKPEE-IPKYLMKLINPILSQLEINLAPGID-----DQENH---L-RIAFQLNTISALFTSLINKKDIIDTD  682 (982)
T ss_pred             HHHHHHHhccHHh-HHHHHHHHHHHHHHHHHHhhcCCCC-----CHHHH---H-HHHHHHHHHHHHHhccCCCCcccccc
Confidence            9999999999766 6899999999999999998776532     23222   1 12334677778888877544310   


Q ss_pred             CCC-------CchHHHHHHhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhh-HhhHHHHHHHHHHhhhhhcCc
Q 002084          671 PAG-------DDPIFALLRVFWPMLEKLFRSEHMENGNLSTAACRALSLAIQSSGQHF-VTLLPQVLDCLSTNFVSFQNH  742 (969)
Q Consensus       671 ~~~-------~~p~~~~~~~i~~~l~~il~~~~~~~~~v~e~~c~~l~~~~~~~~~~~-~p~l~~l~~~l~~~~~~~~~~  742 (969)
                      .+.       .-|.+.++++++|+++.+++ .|.++.+++|++|.++++++++++.++ .|++|.++.++.+ |... +.
T Consensus       683 ~~~~~~~~~qq~~il~v~~k~i~~~~kv~s-~~~~~s~vve~~C~i~~~~v~~~~~sF~~p~l~~l~~Fi~r-~~~~-~~  759 (982)
T KOG2022|consen  683 QPEQREEPFQQFPILQVLQKAIPVFEKVLS-MWLGLSDVVEASCIIMVKGVRSLLTSFPEPMLPSLCPFIVR-FLTS-CL  759 (982)
T ss_pred             chhhhccccccCCHHHHHHHHHHHHHHHHH-HHhcchhHHHHHHHHHHhccccccccchhhhHHHHHHHHHH-hccc-hH
Confidence            001       12677899999999999999 899999999999999999999998887 9999999999988 7643 34


Q ss_pred             ccHHHHHHHHHHHhcCCCCcchhHHHHHHHHhhHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHhhhHHHHhccccchH
Q 002084          743 ECYIRTASVVIEEFGHKDEYGPLFVTTFERFSQAASVRALNSSYICDQEPDLVEAYTNFASTFVRTSRKEVLAASGALLE  822 (969)
Q Consensus       743 ~~~L~l~~~li~~~g~~~~~~~~~~~l~~~l~~~~~l~~l~~~~~~~~~pDl~~~~f~l~~~~l~~~p~~ll~~~~~~l~  822 (969)
                      ..-+.+...++..+..++.+.+.+.+.+..+.+.. +..+.+. .+.++||+.+.+|++++.++++.|+.+.++..++-.
T Consensus       760 a~tl~l~~~~l~~~~~~~~~~~lv~~~~~~~~q~s-l~lf~~~-~f~n~~Di~~~~~~~v~~ilkk~P~~~~~~~~~~ts  837 (982)
T KOG2022|consen  760 AVTLSLIAACLLAKSTVEQCKPLVGQDMANAFQQS-LLLFEQH-PFSNQPDIYLQLIGFVRQILKKIPKFLEPSMLAFTS  837 (982)
T ss_pred             HHHHHHHHHHHHhhhccccccccHHHHHHHHHHHH-HHHHhcc-CCCCCchHHHHHHHHHHHHHHhCcCccccchHHHHH
Confidence            44567778888777777788888877666655554 5556553 489999999999999999999999999986544555


Q ss_pred             HHHHHHHHhhccCchhHHHHHHHHHHHHHhhhhhhccCCCCCCCCccHHHHHHHHHHhccHHHHHHHHHHhcCCCcccch
Q 002084          823 VSFQKAAICCTAMHRGAALAAMSYLSCFLEECLASLLGYTTSIPEGSFNAMAIQVISHSGEGLVSNVVYALLGVSAMSRV  902 (969)
Q Consensus       823 ~i~~~~l~~l~~~e~~~~~a~~~Fl~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~Lv~~ll~~~~g~~~rS~~  902 (969)
                      .++.|++..++.+|+.+++++++||+.|++.+++            ++...+.+++.+.|+.|+.++|+|++|.++||.+
T Consensus       838 ~i~~~a~~ll~~pE~~~i~aa~qF~t~~~~~~~s------------~~~~tv~~~V~~~G~~Li~~im~~vgg~~~RS~l  905 (982)
T KOG2022|consen  838 LILICAFILLNSPEPTTIRAASQFLTALATYATS------------HDLVTVTSVVAEIGPILIYAIMRGVGGEASRSTL  905 (982)
T ss_pred             HHHHHHHHhcCCCccHHHHHHHHHHHHHHhhccc------------chhHHHHHHHHhcchHHHHHHHHHhcCcCccchh
Confidence            5777999999999999999999999998876553            2357899999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHhhhhcccccccccChHHHHHHHHHHHhhhccccccc
Q 002084          903 HKCATILQQLAAICSISERTSGKAILSWESLQGWLHSAVSLFLILIGFG  951 (969)
Q Consensus       903 ~~~~~iL~~l~~~~~~~~~~~~~~~~~~~~~~~Wl~~~l~~~~~~~~~~  951 (969)
                      +.++|+|++|+             ++++..++.|+.++| +.|+..+.|
T Consensus       906 d~~aDIL~al~-------------~k~~se~r~wl~~~l-q~~gfPs~~  940 (982)
T KOG2022|consen  906 DALADILLALN-------------AKFFSETRTWLKAVL-QIPGFPSAG  940 (982)
T ss_pred             HHHHHHHHHHH-------------HhhhHHHHHHHHHHh-cCCCCCccc
Confidence            99999999999             689999999999999 566655555

>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]	Back alignment and domain information

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG2020 consensus Nuclear transport receptor CRM1/MSN5 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]	Back alignment and domain information

>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1410 consensus Nuclear transport receptor RanBP16 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane	Back alignment and domain information

>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]	Back alignment and domain information

>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES)	Back alignment and domain information

>PF03810 IBN_N: Importin-beta N-terminal domain; InterPro: IPR001494 Karyopherins are a group of proteins involved in transporting molecules through the pores of the nuclear envelope	Back alignment and domain information

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG0915 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>COG5657 CSE1 CAS/CSE protein involved in chromosome segregation [Cell division and chromosome partitioning]	Back alignment and domain information

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane	Back alignment and domain information

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]	Back alignment and domain information

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]	Back alignment and domain information

>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []	Back alignment and domain information

>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []	Back alignment and domain information

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]	Back alignment and domain information

>KOG0212 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]	Back alignment and domain information

>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]	Back alignment and domain information

>PRK09687 putative lyase; Provisional	Back alignment and domain information

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []	Back alignment and domain information

>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES)	Back alignment and domain information

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]	Back alignment and domain information

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	Back alignment and domain information

>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment	Back alignment and domain information

>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]	Back alignment and domain information

>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]	Back alignment and domain information

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		969
2xwu_B		963	Crystal Structure Of Importin 13 - Ubc9 Complex Len		4e-18
2x19_B		963	Crystal Structure Of Importin13 - Rangtp Complex Le		2e-14
2x1g_F		971	Crystal Structure Of Importin13 - Mago-Y14 Complex		7e-09

>pdb|2XWU|B Chain B, Crystal Structure Of Importin 13 - Ubc9 Complex Length = 963

Back alignment and structure

Iteration: 1

Score = 90.5 bits (223), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 193/951 (20%), Positives = 378/951 (39%), Gaps = 123/951 (12%) Query: 9 VAQAVHVLNHDTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQ 68 V +A+H L +D N+ A +WL+Q Q + AW + +L D+ E+++F A Sbjct: 26 VEKALHQLYYDPNIENKNLAQKWLMQAQVSPQAWHFSWQLLQPDKVP-----EIQYFGAS 80 Query: 69 ILKRKIQNEGYYLQSAAKDALLNALLVAAKRFSSGPPQLLTQICLALSALILRAVEHGKP 128 L KI + + ++L L RF+SG +LT++C+AL++L L + P Sbjct: 81 ALHIKISRYWSDIPTDQYESLKAQLFTQITRFASGSKIVLTRLCVALASLALSMMPDAWP 140 Query: 129 -----IEKLFYSLQNLQSQDNGNMAVLEMLTVLPEEVIDSQASDCNISSAHRSQYGQELL 183 + +LF + + +A+LE+LTVLPEE S+ R+ E Sbjct: 141 CAVADMVRLFQAEDSPVDGQGRCLALLELLTVLPEEFQTSRLPQYR-KGLVRTSLAVECG 199 Query: 184 SHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQGSLAAHPLL 243 + P++ + L Q S +K+L+C SWV+ E+ A L+ Sbjct: 200 AVFPLLEQLLQQPSSPSC----------VRQKVLKCFSSWVQ----LEVPLQDCEA--LI 243 Query: 244 NFVFNSLQVQSSFDVAIEVLVELVGRHEG--LPQALLCRVPFX--XXXXXXXXXTDGDEK 299 F +LQ FD ++E +V + + + LL +P +GD + Sbjct: 244 QAAFAALQDSELFDSSVEAIVNAISQPDAQRYVNTLLKLIPLVLGLQEQLRQAVQNGDME 303 Query: 300 VIGGLACLMSEIGQAAPSLI---VEASPEALALADALLSCVAFPSE---DWEIADSTLQF 353 G+ + +G+ + VE LAL + ++ C P + + TL F Sbjct: 304 TSHGICRIAVALGENHSRALLDQVEHWQSFLALVNMIMFCTGIPGHYPVNETTSSLTLTF 363 Query: 354 WSTLASYILGLDASIAKNKKHVEDMFFSVFSALLDALLLRAQVDESSFNDDGMVDLPDGL 413 W TL IL + A+ + + ++ V+ L+D LL +AQ D + Sbjct: 364 WYTLQDDILSFE---AEKQAVYQQVYRPVYFQLVDVLLHKAQFPSDEEYGFWSSDEKEQF 420 Query: 414 VQFRMNLVELLVDICQLLRSATFIQKVF--FGS-WGSANVPIPWKEVETKLFALNVVSEV 470 +R+++ + L+ + ++L A + ++ G S+ P W+ E L+ ++E Sbjct: 421 RIYRVDISDTLMYVYEML-GAELLSNLYDKLGRLLTSSEEPYSWQHTEALLYGFQSIAET 479 Query: 471 VLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYR------SLAD----VIGSYSKWI 520 + + S+ + G + ++ R LAD IG+ S+W+ Sbjct: 480 I-------------------DVNYSDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWL 520 Query: 521 SAFQTNARPLLLFLAAGISEAVSSNACASALRKICEDASALIDEPSNLEILMWIGEALEK 580 + +L + + S + S L+KIC + + P I+ + L K Sbjct: 521 ADHPVMINSVLPLVLHALGNPELSVSSVSTLKKICRECKYDL-PPYAANIVAVSQDVLMK 579 Query: 581 RHLPLEDEEEVVGAISLILGSVSNKELKNNLLARLLSSSYEAIGKLID----GDNNHSLI 636 + ++ A+ +L ++ +E+ NL + L+S + + KL + N +++ Sbjct: 580 QIHKTSQCMWLMQALGFLLSALQVEEILKNLHS-LISPYIQQLEKLAEEIPNPSNKLAIV 638 Query: 637 HNPATYTQILSSATRGLY---RMGTVFSHLPVPLPTNPAGDDPIFALLRVFWPMLEKLFR 693 H + + ++ + G LPV P G +P+ +L+ + +++K+ Sbjct: 639 HILGLLSNLFTTLDISHHEDDHEGPELRKLPV-----PQGPNPVVVVLQQVFQLIQKVL- 692 Query: 694 SEHMENGNLSTAACRALSLAIQSSGQHFVTLLPQVLDCLSTNFVSFQNHECYIRTASVVI 753 S+ + + + A C ++++ F ++PQ+ + L + + T +V Sbjct: 693 SKWLNDAQVVEAVCAIFEKSVKTLLDDFAPMVPQLCEMLGRMYSTIPQASALDLTRQLV- 751 Query: 754 EEFGHKDEYGP------LFVT--TFERFSQAASVRALNSSYICDQEPDLVEAYTNFASTF 805 F H+ + P L VT T F Q PD+V+++ + Sbjct: 752 HIFAHEPAHFPPIEALFLLVTSVTLTLFQQGPR-----------DHPDIVDSFMQLLAQA 800 Query: 806 VRTSRKEVLAASGALLEVSFQKAAICCTAMHRGAALAAMSYLSCFLEECLASLLGYTTSI 865 ++ + ++ ++ FQ A + A+ + + L C Sbjct: 801 LK-RKPDLFLCERLDVKAVFQCAVLALKFPEAPTVKASCGFFTELLPRC----------- 848 Query: 866 PEGSFNAMAIQVISHSGEGLVSNVVYALLGVSAMSRVHKCATILQQLAAIC 916 G ++ +V+ G L+ V+ A+ G ++ S + A IL L C Sbjct: 849 --GEVESVG-KVVQEDGRMLLIAVLEAIGGQASRSLMDCFADILFALNKHC 896

PyMOL of 2xwu

>pdb|2X19|B Chain B, Crystal Structure Of Importin13 - Rangtp Complex Length = 963

Back alignment and structure

>pdb|2X1G|F Chain F, Crystal Structure Of Importin13 - Mago-Y14 Complex Length = 971

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		969
2x19_B		963	Importin-13; nuclear transport, protein transport;	1e-103
2x1g_F		971	Cadmus; transport protein, developmental protein,	4e-82
3ibv_A		980	Exportin-T; karyopherin, heat repeat, cytoplasm, n	6e-54
3gjx_A		1073	Exportin-1; transport, cytoplasm, nucleus, RNA-bin	6e-52
3m1i_C		1049	Exportin-1; heat repeat, GTP-binding, nucleotide-b	8e-47
3a6p_A		1204	Exportin-5; exportin-5, RANGTP, nuclearexport, imp	5e-24
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-18
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-14
4fdd_A		852	Transportin-1; heat repeats, karyopherin, nuclear	5e-06
2bpt_A		861	Importin beta-1 subunit; nuclear transport, nucleo	2e-05

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B Length = 963	Back alignment and structure

 Score =  344 bits (882), Expect = e-103
 Identities = 184/963 (19%), Positives = 368/963 (38%), Gaps = 91/963 (9%)

Query: 1   MQMDLQIKVAQAVHVLNHDTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDF 60
           +   ++  V +A+H L +D    N+  A +WL+Q Q +  AW  +  +L  D+       
Sbjct: 19  LDFTVE-NVEKALHQLYYDPNIENKNLAQKWLMQAQVSPQAWHFSWQLLQPDK-----VP 72

Query: 61  EVEFFAAQILKRKIQNEGYYLQSAAKDALLNALLVAAKRFSSGPPQLLTQICLALSALIL 120
           E+++F A  L  KI      + +   ++L   L     RF+SG   +LT++C+AL++L L
Sbjct: 73  EIQYFGASALHIKISRYWSDIPTDQYESLKAQLFTQITRFASGSKIVLTRLCVALASLAL 132

Query: 121 RAVEHGKP-----IEKLFYSLQNLQSQDNGNMAVLEMLTVLPEEVIDSQASDCNISSAHR 175
             +    P     + +LF +  +        +A+LE+LTVLPEE   S+     +    +
Sbjct: 133 SMMPDAWPCAVADMVRLFQAEDSPVDGQGRCLALLELLTVLPEEFQTSR-----LPQYRK 187

Query: 176 SQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQG 235
                 L      V   L Q   +      P       +K+L+C  SWV+     +    
Sbjct: 188 GLVRTSLAVECGAVFPLLEQLLQQ------PSSPSCVRQKVLKCFSSWVQLEVPLQDC-- 239

Query: 236 SLAAHPLLNFVFNSLQVQSSFDVAIEVLVELVGRHEGL-----PQALLCRVPFLKELLLL 290
                 L+   F +LQ    FD ++E +V  + + +          L+  V  L+E  L 
Sbjct: 240 ----EALIQAAFAALQDSELFDSSVEAIVNAISQPDAQRYVNTLLKLIPLVLGLQE-QLR 294

Query: 291 PALTDGDEKVIGGLACLMSEIGQAAPSLIV---EASPEALALADALLSCVAFPS---EDW 344
            A+ +GD +   G+  +   +G+     ++   E     LAL + ++ C   P     + 
Sbjct: 295 QAVQNGDMETSHGICRIAVALGENHSRALLDQVEHWQSFLALVNMIMFCTGIPGHYPVNE 354

Query: 345 EIADSTLQFWSTLASYILGLDASIAKNKKHVEDMFFSVFSALLDALLLRAQVDESSFNDD 404
             +  TL FW TL   IL  +   A+ +   + ++  V+  L+D LL +AQ         
Sbjct: 355 TTSSLTLTFWYTLQDDILSFE---AEKQAVYQQVYRPVYFQLVDVLLHKAQFPSDEEYGF 411

Query: 405 GMVDLPDGLVQFRMNLVELLVDICQLLRSATF--IQKVFFGSWGSANVPIPWKEVETKLF 462
              D  +    +R+++ + L+ + ++L +     +         S+  P  W+  E  L+
Sbjct: 412 WSSDEKEQFRIYRVDISDTLMYVYEMLGAELLSNLYDKLGRLLTSSEEPYSWQHTEALLY 471

Query: 463 ALNVVSEVVLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISA 522
               ++E +          V+  L+ ++       ++     +  ++   IG+ S+W++ 
Sbjct: 472 GFQSIAETIDVN----YSDVVPGLIGLIPRISISNVQ-----LADTVMFTIGALSEWLAD 522

Query: 523 FQTNARPLLLFLAAGISEAVSSNACASALRKICEDASALIDEPSNLEILMWIGEALEKRH 582
                  +L  +   +     S +  S L+KIC +    +  P    I+    + L K+ 
Sbjct: 523 HPVMINSVLPLVLHALGNPELSVSSVSTLKKICRECKYDL-PPYAANIVAVSQDVLMKQI 581

Query: 583 LPLEDEEEVVGAISLILGSVSNKELKNNLLARLLSSSYEAIGKLIDGDNNHSLIHNPATY 642
                   ++ A+  +L ++  +E+  NL   L+S   + + KL +   N S        
Sbjct: 582 HKTSQCMWLMQALGFLLSALQVEEILKNLH-SLISPYIQQLEKLAEEIPNPSNKLAIVHI 640

Query: 643 TQILSSATRGLYRMGTVFSHLPVPLPTN--PAGDDPIFALLRVFWPMLEKLFRSEHMENG 700
             +LS+    L        H    L     P G +P+  +L+  + +++K+  S+ + + 
Sbjct: 641 LGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVVVLQQVFQLIQKVL-SKWLNDA 699

Query: 701 NLSTAACRALSLAIQSSGQHFVTLLPQVLDCLSTNFVSFQNHECYIRTASVVIEEFGHKD 760
            +  A C     ++++    F  ++PQ+ + L   + +       +     ++  F H+ 
Sbjct: 700 QVVEAVCAIFEKSVKTLLDDFAPMVPQLCEMLGRMYSTIP-QASALDLTRQLVHIFAHEP 758

Query: 761 EYGPLFVTTFERFSQAASVRALNSSYICDQEPDLVEAYTNFASTFVRTSRKEVLAASGAL 820
            + P     F   +                 PD+V+++    +  ++      L     +
Sbjct: 759 AHFPPIEALFLLVTSVTLT---LFQQGPRDHPDIVDSFMQLLAQALKRKPDLFLCERLDV 815

Query: 821 LEVSFQKAAICCTAMHRGAALAAMSYLSCFLEECLASLLGYTTSIPEGSFNAMAIQVISH 880
             V FQ A +           A+  + +  L  C                     +V+  
Sbjct: 816 KAV-FQCAVLALKFPEAPTVKASCGFFTELLPRC--------------GEVESVGKVVQE 860

Query: 881 SGEGLVSNVVYALLGVSAMSRVHKCATILQQLAAICSISERTSGKAILSWESLQGWLHSA 940
            G  L+  V+ A+ G ++ S +   A IL  L   C             +  L  W+  A
Sbjct: 861 DGRMLLIAVLEAIGGQASRSLMDCFADILFALNKHC-------------FSLLSMWIKEA 907

Query: 941 VSL 943
           +  
Sbjct: 908 LQP 910

PyMOL of 2x19

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} Length = 971	Back alignment and structure

>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T* Length = 980	Back alignment and structure

>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A Length = 1073	Back alignment and structure

>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B Length = 1049	Back alignment and structure

>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens} Length = 1204	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852	Back alignment and structure

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Length = 861	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		969
4hat_C		1023	Exportin-1; heat repeat, nuclear export, RAN-ranbp	100.0
3gjx_A		1073	Exportin-1; transport, cytoplasm, nucleus, RNA-bin	100.0
2x1g_F		971	Cadmus; transport protein, developmental protein,	100.0
2x19_B		963	Importin-13; nuclear transport, protein transport;	100.0
3ibv_A		980	Exportin-T; karyopherin, heat repeat, cytoplasm, n	100.0
3m1i_C		1049	Exportin-1; heat repeat, GTP-binding, nucleotide-b	100.0
3a6p_A		1204	Exportin-5; exportin-5, RANGTP, nuclearexport, imp	100.0
1wa5_C		960	Importin alpha RE-exporter; nuclear transport/comp	100.0
4fdd_A		852	Transportin-1; heat repeats, karyopherin, nuclear	100.0
2bpt_A		861	Importin beta-1 subunit; nuclear transport, nucleo	100.0
1qgr_A		876	Protein (importin beta subunit); transport recepto	99.95
1ibr_B		462	P95, importin beta-1 subunit, nuclear factor; smal	99.87
1u6g_C		1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	99.44
1w9c_A		321	CRM1 protein, exportin 1; nuclear protein, nuclear	99.41
2bpt_A		861	Importin beta-1 subunit; nuclear transport, nucleo	99.33
4fdd_A		852	Transportin-1; heat repeats, karyopherin, nuclear	99.26
1qgr_A		876	Protein (importin beta subunit); transport recepto	99.26
1b3u_A		588	Protein (protein phosphatase PP2A); scaffold prote	98.66
1u6g_C		1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	98.61
1b3u_A		588	Protein (protein phosphatase PP2A); scaffold prote	98.6
1ibr_B		462	P95, importin beta-1 subunit, nuclear factor; smal	97.31
2vgl_B		591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	96.97
2qk1_A		249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	96.73
2x1g_F		971	Cadmus; transport protein, developmental protein,	96.39
2qk2_A		242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	96.26
4hat_C		1023	Exportin-1; heat repeat, nuclear export, RAN-ranbp	95.74
2jdq_A		450	Importin alpha-1 subunit; transport, PB2 subunit,	95.53
3m1i_C		1049	Exportin-1; heat repeat, GTP-binding, nucleotide-b	95.11
2vgl_B		591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	94.98
1wa5_B		530	Importin alpha subunit; nuclear transport/complex,	94.76
3gjx_A		1073	Exportin-1; transport, cytoplasm, nucleus, RNA-bin	94.66
1w63_A		618	Adapter-related protein complex 1 gamma 1 subunit;	94.39
2x19_B		963	Importin-13; nuclear transport, protein transport;	94.35
4b8j_A		528	Importin subunit alpha-1A; transport protein, nucl	94.27
2z6g_A		780	B-catenin; FULL-length, beta-catenin, cell adhesio	93.6
2qk2_A		242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	93.54
1wa5_C		960	Importin alpha RE-exporter; nuclear transport/comp	93.02
3tpo_A		529	Importin subunit alpha-2; nuclear import, protein	92.93
1wa5_B		530	Importin alpha subunit; nuclear transport/complex,	92.49
2qk1_A		249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	91.7
2jdq_A		450	Importin alpha-1 subunit; transport, PB2 subunit,	90.47
4b8j_A		528	Importin subunit alpha-1A; transport protein, nucl	90.02
1w63_A		618	Adapter-related protein complex 1 gamma 1 subunit;	88.31
1w9c_A		321	CRM1 protein, exportin 1; nuclear protein, nuclear	87.18
3ibv_A		980	Exportin-T; karyopherin, heat repeat, cytoplasm, n	87.07
4hxt_A		252	De novo protein OR329; structural genomics, PSI-bi	85.38
4db8_A		252	Armadillo-repeat protein; solenoid repeat, de novo	84.87
2vgl_A		621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	84.83
1oyz_A		280	Hypothetical protein YIBA; structural genomics, PS	84.25
4hxt_A		252	De novo protein OR329; structural genomics, PSI-bi	82.48
4db6_A		210	Armadillo repeat protein; solenoid repeat, armadil	80.96
2iw3_A		986	Elongation factor 3A; acetylation, ATP-binding, pr	80.61
3u0r_A		507	Apoptosis inhibitor 5; heat repeat, armadillo repe	80.21

>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B	Back alignment and structure

Probab=100.00  E-value=1.9e-86  Score=825.32  Aligned_cols=865  Identities=14%  Similarity=0.154  Sum_probs=682.6

Q ss_pred             HHHHHHHHHHhccCCChHHHHHHHHHHHHHhcChHHHHHHHHhhccCCCCCCccchhHHhhhHHHHHHhhcCcCCCChHH
Q 002084            6 QIKVAQAVHVLNHDTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQSAA   85 (969)
Q Consensus         6 ~~~v~~ai~~ly~~~d~~~~~~A~~~L~~~Q~s~~aW~~~~~LL~~~~~~~~~~~~v~ffaA~tL~~kI~~~~~~l~~~~   85 (969)
                      .+.++++|.++|+++++ .|++|++||++||++|++|.+|..+|..+     .++++|||||++|+++|+++|+.+|+++
T Consensus        15 v~~Le~av~~ly~p~~~-~r~~A~~~L~~~q~sp~aw~~~~~iL~~s-----~~~~vR~faa~~Lk~~I~~~W~~L~~e~   88 (1023)
T 4hat_C           15 IALLDQVVSTFYQGSGV-QQKQAQEILTKFQDNPDAWQKADQILQFS-----TNPQSKFIALSILDKLITRKWKLLPNDH   88 (1023)
T ss_dssp             HHHHHHHHHHHHHCCHH-HHHHHHHHHHHHHHCTTGGGGHHHHHHHC-----CCHHHHHHHHHHHHHHHHHHGGGSCHHH
T ss_pred             HHHHHHHHHHHhCCChH-HHHHHHHHHHHHHcCccHHHHHHHHhcCC-----CCHHHHHHHHHHHHHHHHhhhhcCCHHH
Confidence            67899999999987654 99999999999999999999999999764     3579999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhcCC------ChHHHHHHHHHHHHHHchhc--cCCchHHHHHHHhhcccCCCcchHHHHHHHhhch
Q 002084           86 KDALLNALLVAAKRFSSG------PPQLLTQICLALSALILRAV--EHGKPIEKLFYSLQNLQSQDNGNMAVLEMLTVLP  157 (969)
Q Consensus        86 ~~~Lr~~Ll~~l~~~~~~------~~~v~~kL~~aLa~l~l~~~--~W~~~i~~li~~l~~~~~~~~~~~~lL~~L~~l~  157 (969)
                      +..||+.+++++.++..+      ++.|++|||.+++.++.+.+  .||+++++++..++++   +..++++|.+|+.|+
T Consensus        89 ~~~Ir~~Ll~~l~~~~~~~~~i~~~~~i~nKLa~~la~I~~~~~p~~Wp~~l~dL~~~l~~~---~~~~~~~L~iL~~L~  165 (1023)
T 4hat_C           89 RIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQNWPEFIPELIGSSSSS---VNVCENNMIVLKLLS  165 (1023)
T ss_dssp             HHHHHHHHHHHHHHHHHSHHHHHHCHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHTTTC---HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhChhhchHHHHHHHHHhcCC---HHHHHHHHHHHHHHH
Confidence            999999999999887543      57899999999999999984  6999999999999753   346789999999999


Q ss_pred             hccccccccccCCCHHHHHHHHHHHHhhhhHHHHHHHHhHhhccCCCCCcchhhhHHHHHHHHHHHHHccccccccchhh
Q 002084          158 EEVIDSQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQGSL  237 (969)
Q Consensus       158 EE~~~~~~~~~~l~~~~r~~~~~~l~~~~~~v~~~l~~~l~~~~~~~~~~~~~~~~~~~l~cl~sWi~~~~~~~~~~~~i  237 (969)
                      ||+.+..+.+  ++..||..+++.|..+++.|++++..++....       +.++...+|+|+.+|+.     |+|.+.+
T Consensus       166 EEV~~~~~~~--l~~~r~~~lk~~l~~~~~~I~~ll~~iL~~~~-------~~~l~~~~L~~l~s~l~-----WI~i~~i  231 (1023)
T 4hat_C          166 EEVFDFSAEQ--MTQAKALHLKNSMSKEFEQIFKLCFQVLEQGA-------SSSLIVATLESLLRYLH-----WIPYRYI  231 (1023)
T ss_dssp             HHHHTSCTTT--SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCS-------SCHHHHHHHHHHHHHTT-----TSCTHHH
T ss_pred             HHHHHhhhcc--chHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-------CHHHHHHHHHHHHHHHH-----hCCHHHh
Confidence            9998643333  78889999999999999999999999987642       34678899999999998     7888888


Q ss_pred             cccchHHHHH-hhcCCCCcHHHHHHHHHHHHhcC---C--ChhHH---HH------------hhhhhhHHhhhhhhhccC
Q 002084          238 AAHPLLNFVF-NSLQVQSSFDVAIEVLVELVGRH---E--GLPQA---LL------------CRVPFLKELLLLPALTDG  296 (969)
Q Consensus       238 ~~~~ll~~~~-~~L~~~~~~~~a~~~l~ei~~~~---~--~~~~~---l~------------~~~~~l~~~~~~~~~~~~  296 (969)
                      .++++++.+| +.|.+++++++|++|+++++++.   +  ++.+.   ++            |....+++.|.  ...++
T Consensus       232 ~~~~ll~~l~~~~L~~~~~r~~A~ecL~eIv~~~~~~~~~~~~~~l~~lf~~~l~~l~~~i~p~~~~l~~~~~--~~~~~  309 (1023)
T 4hat_C          232 YETNILELLSTKFMTSPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYA--NANGN  309 (1023)
T ss_dssp             HSSSHHHHHHTHHHHSHHHHHHHHHHHHHHHTSCCCSSCHHHHHHHHHHHHHHHHHHHHHTCCTTCCHHHHHH--HTCTT
T ss_pred             cchhHHHHHHHHHcCCHHHHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHh--ccccc
Confidence            8899999999 99999999999999999999843   2  13321   22            22233455543  23456


Q ss_pred             chhHHhhHHHHHHHHhhhhhHHHHhcCh--h-HHHHHHHHHhcccCCCCCchhhhhhHHHHHHHHHHhhccchhhhhhhh
Q 002084          297 DEKVIGGLACLMSEIGQAAPSLIVEASP--E-ALALADALLSCVAFPSEDWEIADSTLQFWSTLASYILGLDASIAKNKK  373 (969)
Q Consensus       297 d~d~~~~l~~l~~~~~e~~~~~l~~~~~--~-~~~ll~~lL~~~~~p~~d~~v~~~~~~FW~~l~e~l~~~~~~~~~~~~  373 (969)
                      |.+.++++|++|+++|++|...|.+++.  . ....+++|+.|++++  |++++++||+|||.|++.+++-        +
T Consensus       310 D~e~~~~l~~l~~~~~e~~~~li~~~~~~~~~l~~~l~~Ll~~~~~~--d~ei~~~tl~FW~~L~~~l~~e--------~  379 (1023)
T 4hat_C          310 DQSFLQDLAMFLTTYLARNRALLESDESLRELLLNAHQYLIQLSKIE--ERELFKTTLDYWHNLVADLFYE--------P  379 (1023)
T ss_dssp             HHHHHHHHHHHHHHHHHHHGGGGTSCGGGHHHHHHHHHHHHHHTTSS--CHHHHHHHHHHHHHHHHHHTTS--------T
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHhhCCC--cHHHHHHHHHHHHHHHHHHHhc--------h
Confidence            7889999999999999999998876522  2 234577999999997  8999999999999999987642        1


Q ss_pred             hhhhhhHHHHHHHHHHHHHHccCCCCC-----CCCCC------CCCCCchHHHHHHHHHHHHHHHHHhcCcHHHHHHHHh
Q 002084          374 HVEDMFFSVFSALLDALLLRAQVDESS-----FNDDG------MVDLPDGLVQFRMNLVELLVDICQLLRSATFIQKVFF  442 (969)
Q Consensus       374 ~~~~~~~~~~~~l~~~l~~k~~~p~~~-----~~~~~------~~~e~d~f~~fR~~~~d~l~~~~~ilg~~~~l~~l~~  442 (969)
                      .....|+|+|.+|+.++++||+||++.     ..++|      +.|+.+.|+.||    |++.+++.+.|. .++..++.
T Consensus       380 ~~~~~~~~~~~~L~~vli~km~~P~e~~ive~d~~~~~~e~~~d~d~~~~f~~~R----d~L~~l~~l~~~-~~~~~~~~  454 (1023)
T 4hat_C          380 LKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSER----EVLVYLTHLNVI-DTEEIMIS  454 (1023)
T ss_dssp             TTGGGGHHHHHHHHHHHHHSCCCCTTCCEEECTTSCEEECSSCCGGGHHHHHHHH----HHHHHHHHHCHH-HHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCccHHHHhccchHHHHHHHHHH----HHHHHHhccCHH-HHHHHHHH
Confidence            256789999999999999999999842     12233      445667777777    899999998876 56666666


Q ss_pred             hhhcC-CCCCCChhHhHHHHHHHHhhhhccccCCcccchhHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHHhhHHHHH
Q 002084          443 GSWGS-ANVPIPWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWIS  521 (969)
Q Consensus       443 ~~~~~-~~~~~~W~~~Ea~Lf~l~~iae~~~~~~~~~~l~~i~~ll~~l~~~~~~~~~~~~~v~~~t~~~lig~ys~wl~  521 (969)
                      .+... .+++++|+.+||++||+|+|++++.++.....++.++..|..++++...+... ..++. |+|+++|+|++|++
T Consensus       455 ~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k-~~v~~-t~~~~lGry~~wl~  532 (1023)
T 4hat_C          455 KLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNK-AVVAS-DIMYVVGQYPRFLK  532 (1023)
T ss_dssp             HHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHH-HHHHH-HHHHHHHTCHHHHH
T ss_pred             HHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcch-HHHHH-HHHHHHHHHHHHHh
Confidence            54321 12347899999999999999999875422122566666666676542221111 12444 55799999999999


Q ss_pred             hChhchHHHHHHHHHhccc--CchhHHHHHHHHHHHHHhhcccCC------CccHHHHHHHHHHHHhcCCChhhHHHHHH
Q 002084          522 AFQTNARPLLLFLAAGISE--AVSSNACASALRKICEDASALIDE------PSNLEILMWIGEALEKRHLPLEDEEEVVG  593 (969)
Q Consensus       522 ~~p~~L~~~l~~l~~~l~~--~~~~~~Aa~al~~lc~~c~~~l~~------~~~~~~l~~~~~~l~~~~l~~~~~~~l~e  593 (969)
                      .||++|+++++++++++++  |+++.+||.||++||++|+.++..      +++++.+.+.+.... ..++...+..+++
T Consensus       533 ~~~~~L~~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p~~~~il~~l~~~~-~~l~~~~~~~lye  611 (1023)
T 4hat_C          533 AHWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTT-ADLQPQQVHTFYK  611 (1023)
T ss_dssp             HCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHH-TTSCHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHHHHHHHH-HhCCHHHHHHHHH
Confidence            9999999999999999964  579999999999999999987742      235565555444433 3688999999999


Q ss_pred             HHHHHhccCCchHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCchhHH--HHHHHHHHHHHhhhhhcccccccCCCCC
Q 002084          594 AISLILGSVSNKELKNNLLARLLSSSYEAIGKLIDGDNNHSLIHNPATYT--QILSSATRGLYRMGTVFSHLPVPLPTNP  671 (969)
Q Consensus       594 ai~~ii~~lp~~~~~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~--~~L~~~~~~l~~L~~i~~~l~~~~~~~~  671 (969)
                      |+|.+|+++|+++.+..+++.|+.|..+.|+++.+++     ..+|..+.  ...+.....+++++++.+.++       
T Consensus       612 ai~~vi~~~~~~~~~~~~l~~L~~~~~~~~~~l~~~~-----~~~~~~~~d~~~~~~l~~il~~~~~v~~~lg-------  679 (1023)
T 4hat_C          612 ACGIIISEERSVAERNRLLSDLMQLPNMAWDTIVEQS-----TANPTLLLDSETVKIIANIIKTNVAVCTSMG-------  679 (1023)
T ss_dssp             HHHHHHTTCCSHHHHHHHHHHHTHHHHHHHHHHHHHH-----HHCTTGGGCHHHHHHHHHHHHHHHHHHHHHG-------
T ss_pred             HHHHHHHhCCCHhhHHHHHHHHHHhHHHHHHHHHHHH-----hcCchhhcCHHHHHHHHHHHHHHHHHHHHhc-------
Confidence            9999999999887789999999999999999998753     12333221  112223344555555544444       


Q ss_pred             CCCchHHHHHHhHHHHHHHHHHhhhcc--------chHH-----HHHHHHHHHHHHHhh-----hhh------hHhhHHH
Q 002084          672 AGDDPIFALLRVFWPMLEKLFRSEHME--------NGNL-----STAACRALSLAIQSS-----GQH------FVTLLPQ  727 (969)
Q Consensus       672 ~~~~p~~~~~~~i~~~l~~il~~~~~~--------~~~v-----~e~~c~~l~~~~~~~-----~~~------~~p~l~~  727 (969)
                         +++.+.++.+||.+..+.. .+.+        ++.+     ..+.||++|+.+-.+     +..      ...++|+
T Consensus       680 ---~~f~~~~~~i~~~~l~~y~-~~s~~i~~~~~~~g~~~~~~~~~r~~r~ik~~il~l~~~~i~~~~~~~~~~~~~~~~  755 (1023)
T 4hat_C          680 ---ADFYPQLGHIYYNMLQLYR-AVSSMISAQVAAEGLIATKTPKVRGLRTIKKEILKLVETYISKARNLDDVVKVLVEP  755 (1023)
T ss_dssp             ---GGGHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHCGGGGGSHHHHHHHHHHHHHHHHHHHHHHHCSCHHHHHHHTHHH
T ss_pred             ---HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhCCchhhccHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHhHHH
Confidence               5577888888998887765 3421        1111     236788887775432     111      4567899


Q ss_pred             HHHHHHHhhhhhc---CcccHHHHHHHHHHHhcCCCCcchhHHHHHHHHhhHHHHHHhhcCCCCCCCCcHHHHHHHHHHH
Q 002084          728 VLDCLSTNFVSFQ---NHECYIRTASVVIEEFGHKDEYGPLFVTTFERFSQAASVRALNSSYICDQEPDLVEAYTNFAST  804 (969)
Q Consensus       728 l~~~l~~~~~~~~---~~~~~L~l~~~li~~~g~~~~~~~~~~~l~~~l~~~~~l~~l~~~~~~~~~pDl~~~~f~l~~~  804 (969)
                      +++.++..|..+.   ++|++|++.+++|+++|+  .+.+.+..+++.+.++| +.++++  ++.++||++.+||+|+.+
T Consensus       756 l~~~vl~dY~~~~~~~r~~~vL~l~s~iv~~~~~--~~~~~~~~il~~vf~~T-l~mi~~--~~~~~Pe~r~~ff~ll~~  830 (1023)
T 4hat_C          756 LLNAVLEDYMNNVPDARDAEVLNCMTTVVEKVGH--MIPQGVILILQSVFECT-LDMINK--DFTEYPEHRVEFYKLLKV  830 (1023)
T ss_dssp             HHHHHHHHHHHSCGGGCCHHHHHHHHHHHHHHGG--GCHHHHHHHHHHHHHHH-HHHHSS--CSSSSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCChhhccHHHHHHHHHHHHHHHH--hhhhhhHHHHHHHHHHH-HHHHhc--ccccChHHHHHHHHHHHH
Confidence            9999999998652   469999999999999997  57788999999999998 888874  899999999999999999


Q ss_pred             HHHhhhHHHHhccccchHHHHHHHHHhhccCchhHHHHHHHHHHHHHhhhhhhccCCCCCCCCccHHHHHHHHHHhccHH
Q 002084          805 FVRTSRKEVLAASGALLEVSFQKAAICCTAMHRGAALAAMSYLSCFLEECLASLLGYTTSIPEGSFNAMAIQVISHSGEG  884 (969)
Q Consensus       805 ~l~~~p~~ll~~~~~~l~~i~~~~l~~l~~~e~~~~~a~~~Fl~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~  884 (969)
                      ++++||..++..++..+..+++++++|++++||++..++++|+.++++.....    ++       .+..++++++++..
T Consensus       831 ~~~~~f~~~~~~~~~~~~~~~~~~~~a~~h~~r~~~~~~l~~~~~ll~~~~~~----~~-------~~~~~~f~~~~~~~  899 (1023)
T 4hat_C          831 INEKSFAAFLELPPAAFKLFVDAICWAFKHNNRDVEVNGLQIALDLVKNIERM----GN-------VPFANEFHKNYFFI  899 (1023)
T ss_dssp             HHHHCTHHHHTSCHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHH----CS-------SHHHHHHHHHHHHH
T ss_pred             HHHHChHHHHcCCHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHhc----CC-------hHHHHHHHHHHHHH
Confidence            99999999999876789999999999999999999999999999999876642    11       26789999999999


Q ss_pred             HHHHHHHHhcCCCcccchhhHHHHHHHHHHHhhhhccccc---------ccccChHHHHHHHHHHHh-hhcc
Q 002084          885 LVSNVVYALLGVSAMSRVHKCATILQQLAAICSISERTSG---------KAILSWESLQGWLHSAVS-LFLI  946 (969)
Q Consensus       885 Lv~~ll~~~~g~~~rS~~~~~~~iL~~l~~~~~~~~~~~~---------~~~~~~~~~~~Wl~~~l~-~~~~  946 (969)
                      ++..++..+++..++|++...+.+|+.|+.+...- .+..         ++..+...++.|+.+.|. ++|+
T Consensus       900 ~~~~~~~v~td~~h~~~f~~~~~~l~~l~~~~~~~-~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~fp~  970 (1023)
T 4hat_C          900 FVSETFFVLTDSDHKSGFSKQALLLMKLISLVYDN-KISVPLYQEAEVPQGTSNQVYLSQYLANMLSNAFPH  970 (1023)
T ss_dssp             HHHHHHHHHHSSSCGGGHHHHHHHHHHHHHHHHTT-CCCSCSSCTTSSCTTCCHHHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHhCchhhhhHHHHHHHHHHHHHHHHcC-CcccccCCccccCCCCchHHHHHHHHHHHHHHhCCC
Confidence            99999999999999999999999999999653330 0110         112334578899988776 4444

PyMOL of 4hat

>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A	Back alignment and structure

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}	Back alignment and structure

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B	Back alignment and structure

>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*	Back alignment and structure

>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B	Back alignment and structure

>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}	Back alignment and structure

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A	Back alignment and structure

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*	Back alignment and structure

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A	Back alignment and structure

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A	Back alignment and structure

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A	Back alignment and structure

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A	Back alignment and structure

>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19	Back alignment and structure

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A	Back alignment and structure

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*	Back alignment and structure

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A	Back alignment and structure

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A	Back alignment and structure

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A	Back alignment and structure

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A	Back alignment and structure

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A	Back alignment and structure

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B	Back alignment and structure

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}	Back alignment and structure

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}	Back alignment and structure

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}	Back alignment and structure

>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B	Back alignment and structure

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A	Back alignment and structure

>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B	Back alignment and structure

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B	Back alignment and structure

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A	Back alignment and structure

>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A	Back alignment and structure

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1	Back alignment and structure

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B	Back alignment and structure

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A	Back alignment and structure

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}	Back alignment and structure

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}	Back alignment and structure

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A	Back alignment and structure

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B	Back alignment and structure

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A	Back alignment and structure

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}	Back alignment and structure

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A	Back alignment and structure

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A	Back alignment and structure

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1	Back alignment and structure

>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19	Back alignment and structure

>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*	Back alignment and structure

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}	Back alignment and structure

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}	Back alignment and structure

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A	Back alignment and structure

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16	Back alignment and structure

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}	Back alignment and structure

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A	Back alignment and structure

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A	Back alignment and structure

>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		969
d1qbkb_		888	a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi	1e-07
d2bpta1		861	a.118.1.1 (A:1-861) Importin beta {Baker's yeast (	6e-06

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888	Back information, alignment and structure


class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.5 bits (127), Expect = 1e-07
 Identities = 91/749 (12%), Positives = 192/749 (25%), Gaps = 66/749 (8%)

Query: 9   VAQAVHVLN--HDTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFA 66
           + Q + +L      ++  +    Q L Q  Q          +LT  +     D      +
Sbjct: 10  LQQILQLLKESQSPDTTIQRTVQQKLEQLNQYPDFNNYLIFVLTKLKSE---DEPTRSLS 66

Query: 67  AQILKRKIQNEGYYLQSAAKDALLNALLVAAKRFSSGPPQLLTQICLALSALILRAVEHG 126
             ILK  ++       +   D + +  L          P +   + + ++  I    E  
Sbjct: 67  GLILKNNVKAHFQNFPNGVTDFIKSECLNN---IGDSSPLIRATVGILITT-IASKGELQ 122

Query: 127 KPIEKLFYSLQNLQSQD-NGNMAVLEMLTVLPEEVIDSQASDCNISSAHRSQYGQELLSH 185
              + L      L S+D N        L  + E+  +   SD         +    ++  
Sbjct: 123 NWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSD------VLDRPLNIMI-- 174

Query: 186 TPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQGSLAAHPLLNF 245
            P  ++F    S K                 +R              +Q  +        
Sbjct: 175 -PKFLQFFKHSSPK-----------------IRSHAVACVNQFIISRTQALMLHIDSFTE 216

Query: 246 VFNSLQVQSSFDVAIEVLVELVGRHEGLPQALLCRVPFLKELLLLPALTDGDEKVIGGLA 305
              +L      +V   V   LV   E     LL  +  + E  +L    D DE V     
Sbjct: 217 NLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVE-YMLQRTQDQDENVALEAC 275

Query: 306 CLMSEIGQAAPSLIVEASPEALALADALLSCVAFPSEDWEIADSTLQFWSTLASYILGLD 365
                + +      V        L   L++ + +   D  +    ++   T+      + 
Sbjct: 276 EFWLTLAEQPICKDV-LVRHLPKLIPVLVNGMKYSDIDIILLKGDVEEDETIPDSEQDIR 334

Query: 366 ASIAKNKKHVEDMFFSVFSALLDALLLRAQVDESSFNDDGMVDLPDGLVQFRMNLVELLV 425
               +++   +           D        D  S  +          V   +   ELL 
Sbjct: 335 PRFHRSRTVAQQHDEDGIEEEDDDDDEIDDDDTISDWNLRKCSAAALDVLANVYRDELLP 394

Query: 426 DICQLL---RSATFIQKVFFGSWGSANVPIPWKEVETKLFALNVVSEVVLQEGQAFD--F 480
            I  LL              G      +     +         +   +     +      
Sbjct: 395 HILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRS 454

Query: 481 SVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISAFQTNARPLLLFLAAGISE 540
                L        S+    ++  +   L   I   +K +     +A   L   A     
Sbjct: 455 ITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEA----- 509

Query: 541 AVSSNACASALRKICEDASALIDEPSNLEILMWIGEALEKRHLPLEDEEEVVGAISLILG 600
                     L  I +       +  + + L+ + +A+      +         I +++ 
Sbjct: 510 ---CTELVPYLAYILDTLVFAFSKYQH-KNLLILYDAIGTLADSVGHHLNKPEYIQMLMP 565

Query: 601 SVSNKELKNNLLARLLSSSYEAIGKLIDGDNNHSLIHNPATYTQILSSATRGLYR----- 655
            +  K        + L    E +  +     +  L +    Y + ++   + L +     
Sbjct: 566 PLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNN 625

Query: 656 ---------MGTVFSHLPVPLPTNPAGDDPIFALLRVFWPMLEKLFRSEHMENGNLSTAA 706
                               L     G       L     +L  +++    +   +  ++
Sbjct: 626 AQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSS 685

Query: 707 CRALSLAIQSSGQHFVTLLPQVLDCLSTN 735
              L    ++  QH    +   +  L TN
Sbjct: 686 FALLGDLTKACFQHVKPCIADFMPILGTN 714

PyMOL of d1qbkb_

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 861	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		969
d2bpta1		861	Importin beta {Baker's yeast (Saccharomyces cerevi	99.95
d1qbkb_		888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	99.95
d1qgra_		876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	99.92
d1wa5c_		959	Exportin Cse1p {Baker's yeast (Saccharomyces cerev	99.92
d1ibrb_		458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	99.75
d1w9ca_		321	Exportin-1 (Xpo1, Crm1) {Human (Homo sapiens) [Tax	99.31
d2bpta1		861	Importin beta {Baker's yeast (Saccharomyces cerevi	99.03
d1u6gc_		1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	99.03
d1qbkb_		888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	98.53
d1b3ua_		588	Constant regulatory domain of protein phosphatase	98.36
d1qgra_		876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	98.25
d1b3ua_		588	Constant regulatory domain of protein phosphatase	98.25
d1ibrb_		458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	97.63
d2vglb_		579	Adaptin beta subunit N-terminal fragment {Human (H	96.46
d1u6gc_		1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	95.76
d2vglb_		579	Adaptin beta subunit N-terminal fragment {Human (H	90.12
d1q1sc_		434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	90.08
d1q1sc_		434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	89.89
d1wa5c_		959	Exportin Cse1p {Baker's yeast (Saccharomyces cerev	88.3
d1w9ca_		321	Exportin-1 (Xpo1, Crm1) {Human (Homo sapiens) [Tax	86.55

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=2.9e-22  Score=247.79  Aligned_cols=714  Identities=12%  Similarity=0.105  Sum_probs=433.0

Q ss_pred             HHHHHHHHHHhccCCChHHHHHHHHHHHHHhcC--hHHHHHHHHhhccCCCCCCccchhHHhhhHHHHHHhhcCcC----
Q 002084            6 QIKVAQAVHVLNHDTESCNRVAANQWLVQFQQT--DAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGY----   79 (969)
Q Consensus         6 ~~~v~~ai~~ly~~~d~~~~~~A~~~L~~~Q~s--~~aW~~~~~LL~~~~~~~~~~~~v~ffaA~tL~~kI~~~~~----   79 (969)
                      .+++.+++...+.++|++.|++|+++|++++++  |+.+..+.+++.+.+    .+.++|++|+.+||+.|.++|.    
T Consensus         3 ~~~~~~~L~~~~~s~d~~~r~~Ae~~L~~~~~~~~~~~~~~l~~il~~~~----~~~~~r~~A~i~lkn~i~~~~~~~~~   78 (861)
T d2bpta1           3 TAEFAQLLENSILSPDQNIRLTSETQLKKLSNDNFLQFAGLSSQVLIDEN----TKLEGRILAALTLKNELVSKDSVKTQ   78 (861)
T ss_dssp             HHHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHTCTT----SCHHHHHHHHHHHHTTTCCSSHHHHH
T ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHcCC----CCHHHHHHHHHHHHHHhhcccchhhh
Confidence            567899998865578999999999999999987  777777888887643    4579999999999999998874    


Q ss_pred             --------CCChHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHchh-c--cCCchHHHHHHHhhcccCCCcchHH
Q 002084           80 --------YLQSAAKDALLNALLVAAKRFSSGPPQLLTQICLALSALILRA-V--EHGKPIEKLFYSLQNLQSQDNGNMA  148 (969)
Q Consensus        80 --------~l~~~~~~~Lr~~Ll~~l~~~~~~~~~v~~kL~~aLa~l~l~~-~--~W~~~i~~li~~l~~~~~~~~~~~~  148 (969)
                              .++++.+..+|+.++..+.   +.++.|+++++.+++.++... +  .||+.++.++..+.+.. .......
T Consensus        79 ~~~~~~~~~i~~~~~~~ik~~ll~~l~---~~~~~vr~~~a~~i~~i~~~~~p~~~wpeli~~L~~~~~s~~-~~~~~~~  154 (861)
T d2bpta1          79 QFAQRWITQVSPEAKNQIKTNALTALV---SIEPRIANAAAQLIAAIADIELPHGAWPELMKIMVDNTGAEQ-PENVKRA  154 (861)
T ss_dssp             HHHHHHHHHSCHHHHHHHHHHHHHHHT---CSSHHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHHHHTSTTS-CHHHHHH
T ss_pred             hHHhhhHhcCCHHHHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHHHHhCCcCchHHHHHHHHHHhcCCC-cHHHHHH
Confidence                    5899999999999998775   567899999999999998653 4  59999999999987642 2223456


Q ss_pred             HHHHHhhchhccccccccccCCCHHHHHHHHHHHHhhhhHHHHHHHHhHhhccCCCCCcchhhhHHHHHHHHHHHHHccc
Q 002084          149 VLEMLTVLPEEVIDSQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGC  228 (969)
Q Consensus       149 lL~~L~~l~EE~~~~~~~~~~l~~~~r~~~~~~l~~~~~~v~~~l~~~l~~~~~~~~~~~~~~~~~~~l~cl~sWi~~~~  228 (969)
                      .+.+|..+.|+....      ...         +......++..+.+.+....      .+..++..+++|+.+++.+. 
T Consensus       155 al~~l~~i~e~~~~~------~~~---------~~~~~~~il~~i~~~~~~~~------~~~~v~~~a~~~l~~~~~~~-  212 (861)
T d2bpta1         155 SLLALGYMCESADPQ------SQA---------LVSSSNNILIAIVQGAQSTE------TSKAVRLAALNALADSLIFI-  212 (861)
T ss_dssp             HHHHHHHHHHTSSTT------SST---------TGGGHHHHHHHHHHHHSTTC------CCHHHHHHHHHHHHHHGGGC-
T ss_pred             HHHHHHHHHHHhhHH------HHH---------HHHHHHHHHHHHHHHHhccc------CCHHHHHHHHHHHHHHHHHH-
Confidence            788888888877421      110         11122223322222222211      23568899999999988753 


Q ss_pred             cccccchhh---cccchHHHHHhhcCCCCcHHHHHHHHHHHHhcCCChhHHHHhhhhhhHHhhhhhhhccCchhHHhhHH
Q 002084          229 FTEISQGSL---AAHPLLNFVFNSLQVQSSFDVAIEVLVELVGRHEGLPQALLCRVPFLKELLLLPALTDGDEKVIGGLA  305 (969)
Q Consensus       229 ~~~~~~~~i---~~~~ll~~~~~~L~~~~~~~~a~~~l~ei~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~d~d~~~~l~  305 (969)
                          +....   ....+++.++.                                           ...++|.+.....+
T Consensus       213 ----~~~~~~~~~~~~~~~~l~~-------------------------------------------~~~~~~~~~~~~~~  245 (861)
T d2bpta1         213 ----KNNMEREGERNYLMQVVCE-------------------------------------------ATQAEDIEVQAAAF  245 (861)
T ss_dssp             ----HHHHTSHHHHHHHHHHHHH-------------------------------------------HHTCSCHHHHHHHH
T ss_pred             ----hHhHHhhhhhhHHHHhHHH-------------------------------------------HhcCCCHHHHHHHH
Confidence                11110   00111112222                                           22334444444555


Q ss_pred             HHHHHHhhhhhHHHHhcChhHHHHHHHHH-hcccCCCCCchhhhhhHHHHHHHHHHhhccchhhhh---hhhhhhhhhHH
Q 002084          306 CLMSEIGQAAPSLIVEASPEALALADALL-SCVAFPSEDWEIADSTLQFWSTLASYILGLDASIAK---NKKHVEDMFFS  381 (969)
Q Consensus       306 ~l~~~~~e~~~~~l~~~~~~~~~ll~~lL-~~~~~p~~d~~v~~~~~~FW~~l~e~l~~~~~~~~~---~~~~~~~~~~~  381 (969)
                      ..+..+++.+...+..   .....+..++ .....+  +.++...+++||..+++...+.......   ..........+
T Consensus       246 ~~l~~i~~~~~~~~~~---~l~~~l~~l~~~~~~~~--~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (861)
T d2bpta1         246 GCLCKIMSKYYTFMKP---YMEQALYALTIATMKSP--NDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALS  320 (861)
T ss_dssp             HHHHHHHHHHGGGCHH---HHHHTHHHHHHHHTTCS--SHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHH
T ss_pred             HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhcCc--cHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence            5555555554433321   1122222222 233333  5678889999999988764322111000   00011123455


Q ss_pred             HHHHHHHHHHHHccCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHhcCcHHHHHHHHhhhhcCCCCCCChhHhHHHH
Q 002084          382 VFSALLDALLLRAQVDESSFNDDGMVDLPDGLVQFRMNLVELLVDICQLLRSATFIQKVFFGSWGSANVPIPWKEVETKL  461 (969)
Q Consensus       382 ~~~~l~~~l~~k~~~p~~~~~~~~~~~e~d~f~~fR~~~~d~l~~~~~ilg~~~~l~~l~~~~~~~~~~~~~W~~~Ea~L  461 (969)
                      .+..+++.+..-+..+.++.        .++....|.....++...+..+|.. .+..+...... ...+.+|...++++
T Consensus       321 ~l~~i~~~l~~~l~~~~~~~--------~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~a~  390 (861)
T d2bpta1         321 SIKDVVPNLLNLLTRQNEDP--------EDDDWNVSMSAGACLQLFAQNCGNH-ILEPVLEFVEQ-NITADNWRNREAAV  390 (861)
T ss_dssp             HHHHHHHHHHHHTTCCCCC---------CCCCCHHHHHHHHHHHHHHHHHGGG-GHHHHHHHHHH-HTTCSSHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhccc--------cchhHHHHHHHHHHHHHHHhhcchh-hhhhhcchhhh-hhhhHHHHHHHHHH
Confidence            66677777766665443311        1111344555666677776666653 22222221111 01356799999999


Q ss_pred             HHHHhhhhccccCCcccchhHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHHhhHHHHHh---ChhchHHHHHHHHHhc
Q 002084          462 FALNVVSEVVLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISA---FQTNARPLLLFLAAGI  538 (969)
Q Consensus       462 f~l~~iae~~~~~~~~~~l~~i~~ll~~l~~~~~~~~~~~~~v~~~t~~~lig~ys~wl~~---~p~~L~~~l~~l~~~l  538 (969)
                      ++++++++....+.....++.++..+......+..      .+|.++ ++++|++++++..   .+++++.++..++..+
T Consensus       391 ~~l~~i~~~~~~~~~~~~l~~~l~~l~~~l~d~~~------~vr~~a-~~~l~~l~~~~~~~~~~~~~~~~ll~~l~~~~  463 (861)
T d2bpta1         391 MAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSL------QVKETT-AWCIGRIADSVAESIDPQQHLPGVVQACLIGL  463 (861)
T ss_dssp             HHHHHTSSSSCHHHHHHHHHHHHHHHHHGGGCSCH------HHHHHH-HHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHH
T ss_pred             HHHHHHHhhcchhhHHHHHHHHHHHHHHHhcCcch------hhhhHH-HHHHHHHHHHhchhhhhHHhhhhhhHHHHhcc
Confidence            99999988765322111123444444444444432      267766 5999999999875   3568899999999888


Q ss_pred             cc-CchhHHHHHHHHHHHHHhhcccCCCccHHHHHHHH----HHHHhcCCChhhHHHHHHHHHHHhccCCchHHHHHHHH
Q 002084          539 SE-AVSSNACASALRKICEDASALIDEPSNLEILMWIG----EALEKRHLPLEDEEEVVGAISLILGSVSNKELKNNLLA  613 (969)
Q Consensus       539 ~~-~~~~~~Aa~al~~lc~~c~~~l~~~~~~~~l~~~~----~~l~~~~l~~~~~~~l~eai~~ii~~lp~~~~~~~~l~  613 (969)
                      .+ +.+...|+.++..++..+...... ...+.+..+.    ........+...+...+++++.++...+..  ...++.
T Consensus       464 ~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~i~~~~~~--~~~~~~  540 (861)
T d2bpta1         464 QDHPKVATNCSWTIINLVEQLAEATPS-PIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDT--VAETSA  540 (861)
T ss_dssp             TSCHHHHHHHHHHHHHHHHHHSSSSSC-GGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGG--GHHHHH
T ss_pred             ccChHHHHHHHHHHHHHHHHhhhcccc-hhhHHHhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhHHH--HHHHHH
Confidence            75 557888999999999988775532 1222233322    222233445567888899999999998864  356677


Q ss_pred             HHHHHHHHHHHhhhcccCCCCCCCCchhHHHHHHHHHHHHHhhhhhcccccccCCCCCCCCchHHHHHHhHHHHHHHHHH
Q 002084          614 RLLSSSYEAIGKLIDGDNNHSLIHNPATYTQILSSATRGLYRMGTVFSHLPVPLPTNPAGDDPIFALLRVFWPMLEKLFR  693 (969)
Q Consensus       614 ~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~l~~L~~i~~~l~~~~~~~~~~~~p~~~~~~~i~~~l~~il~  693 (969)
                      .+.......+.+.+..........+.... ..+  .......+..+++.....          ..+....+++.+...+.
T Consensus       541 ~l~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~l--~~~~~~~l~~~~~~~~~~----------~~~~~~~l~~~l~~~l~  607 (861)
T d2bpta1         541 SISTFVMDKLGQTMSVDENQLTLEDAQSL-QEL--QSNILTVLAAVIRKSPSS----------VEPVADMLMGLFFRLLE  607 (861)
T ss_dssp             HHHHHHHHHHHHHTTSCGGGCCHHHHHHH-HHH--HHHHHHHHHHHHHHCGGG----------TGGGHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhhhhhhHHhHH-HHH--HHHHHHHHHHHHhcchhh----------HHHHHHHHHHHHhhhcc
Confidence            77777777777665432110000000000 000  011222333344332211          11344567777777665


Q ss_pred             hhhccchHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHHHhhhhhcCccc----HHHHHHHHHHHhcCCCCcchhHHHH
Q 002084          694 SEHMENGNLSTAACRALSLAIQSSGQHFVTLLPQVLDCLSTNFVSFQNHEC----YIRTASVVIEEFGHKDEYGPLFVTT  769 (969)
Q Consensus       694 ~~~~~~~~v~e~~c~~l~~~~~~~~~~~~p~l~~l~~~l~~~~~~~~~~~~----~L~l~~~li~~~g~~~~~~~~~~~l  769 (969)
                        -..+..+.+.++.++......+|..+.|+++.++..+......  ..+.    .+.+++.+....|.  ...+.+..+
T Consensus       608 --~~~~~~v~~~~l~~l~~l~~~~~~~~~~~l~~i~p~l~~~l~~--~~~~v~~~a~~~l~~i~~~~~~--~~~~~~~~i  681 (861)
T d2bpta1         608 --KKDSAFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQ--VDSPVSITAVGFIADISNSLEE--DFRRYSDAM  681 (861)
T ss_dssp             --STTGGGTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHC--TTSHHHHHHHHHHHHHHHHTGG--GGHHHHHHH
T ss_pred             --cCCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHhCC--CCHHHHHHHHHHHHHHHHHhHH--HhHhhHHHH
Confidence              3355677888999999999999999999999998888876653  2222    23455555555554  334444444


Q ss_pred             HHHHhhHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHhhhHHHHhccccchHHHHHHHHHhhccCch-----------h
Q 002084          770 FERFSQAASVRALNSSYICDQEPDLVEAYTNFASTFVRTSRKEVLAASGALLEVSFQKAAICCTAMHR-----------G  838 (969)
Q Consensus       770 ~~~l~~~~~l~~l~~~~~~~~~pDl~~~~f~l~~~~l~~~p~~ll~~~~~~l~~i~~~~l~~l~~~e~-----------~  838 (969)
                      ++.+..     .+.   ....++++....+..++.++.+.+..+.    ++++.+++....++...-.           .
T Consensus       682 ~~~L~~-----~l~---~~~~~~~~k~~~~~~l~~i~~~~~~~~~----~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~  749 (861)
T d2bpta1         682 MNVLAQ-----MIS---NPNARRELKPAVLSVFGDIASNIGADFI----PYLNDIMALCVAAQNTKPENGTLEALDYQIK  749 (861)
T ss_dssp             HHHHHH-----HHH---CTTCCTTHHHHHHHHHHHHHHHHGGGGH----HHHHHHHHHHHHHHTCCCSSSSHHHHHHHHH
T ss_pred             HHHHHH-----HhC---CCCCCHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhCcCCCcccHHHHHHHHH
Confidence            444333     232   2356788999999999999998877664    4577777766666653321           1


Q ss_pred             HHHHHHHHHHHHHh
Q 002084          839 AALAAMSYLSCFLE  852 (969)
Q Consensus       839 ~~~a~~~Fl~~li~  852 (969)
                      ...+++..+..++.
T Consensus       750 l~~~~~~~~~~i~~  763 (861)
T d2bpta1         750 VLEAVLDAYVGIVA  763 (861)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            23455666666654

PyMOL of d2bpta1

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1w9ca_ a.118.1.19 (A:) Exportin-1 (Xpo1, Crm1) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1w9ca_ a.118.1.19 (A:) Exportin-1 (Xpo1, Crm1) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure