Citrus Sinensis ID: 002096

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------
MMPDISIRSSMYKSPDYVEDLGKLIREQKQQQHLQEATQVNSASAADLEKELNIFRSGSAPPTVEGSLSSIDGLFKKLSDNKGGFLNEEELRADPAYVNYYYSNVNLNPRLPPPLLSKEDWRFTQRLRGGGEVGGIGDRRKGNGSLFAVQPGFGGKEEENSGGSGGGGEWGGDGLIGLPGLGLGSRQKSIAEIIQDDMSHGAPVSRHPSRPPSRNAFEDAIESSETQFAHLHHDLSSIDGLGSSANKQGMPSAQSIGTSASHSYASALGASLSRSTTPDPQLMARAPSPRIPTAGVGRASSMDKRTVSGPLPLNGVSPSLKDSAEIVAALSGLNLSTDGVADQENNSRSQNQHEIDDRHSLFNLQGDSRHMKQHPFLGRSESGHLLMHSASHSTKGSYPNMGKSGVGIDMNNASLMADGHKSALSSSNSYLKGPCTPTLNGGGNSPSHHQVMGNMNSAFSNFSLNGYSMNPSSPSMMGSPIGSGNLPPLYENAAAASAMAGNGLDARTLASLGLGPNVMAAAAELQSMNRLGNHTAGSALQAPLMDPLYLQYLRSNEYAAAQVASLNDPAMDIGNSYMDLLGLQKAYLGALLSPQKSQYGVPYLNKSGSLNNNLYGNPAFGLGMSYPGGPLLPNSPVGSGSPVRHGDRNMRFPSGMRNLSGGVMGPWHSEAGGSLDESFASSLLDEFKSNKTKCFELSEIAGHVVEFSADQYGSRFIQQKLETATTEEKNMVFQEIMPQALSLMTDVFGNYVIQKFFEHGTASQVRELADQLTGHVLTLSLQMYGCRVIQKAIEVVELDQQTQMVKELDGHIMRCVRDQNGNHVIQKCIECVPEDAIQFIVLTFYDQVVTLSTHPYGCRVIQRVLEHCHDEKTQSIMMDEILQSVCMLAQDQYGNYVVQHVLEHGKPHERSAIIKKLTGQIVQMSQQKFASNVIEKCLSFGTPAERQALVNEMLGSIEENEPLQVCQ
cccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHcccccccccccccccHHHHHHHHHHHccccccccccccHHHHHccccccEEccccccccccccccccccHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccHHHccccccccccccccccccccccHHHHHccccccccccccccccccccccccccccHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHccccccccccccccHHHHHHccccHHcHHHHHHHHHccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHccHHHHHHHHHHHHHcccHHcccccccHHHHHHHHccccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHcccHHHHHHHHHHHHccccccccccccc
ccccHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHccccccccccccHHHHHcccHHHHHHEcccccccccccccccHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHccccccccccccccccccccccccccccHHHHHHHcccHHccccccccccccccccccccccccccHHHHccccccccccccccHccccccccccccccccccccccccccccccccccccccccccHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHccccccHHHccccccccccccccccccccHHHHcccHHHHHccccccccccccccccccccccccccccccccccccccccccEEcccccccccEEEEEcccccccccHHHHHHHHHHHHHHccccccHHHHHHHccccccccHHHHcccHHHHHccHHHHHHHHHHHccccHHHHHHHHHHHcccHHHHHccccHHHHHHHHHHHccHHHHHHHHHHHcccHHHHHccccHHHHHHHHHHHccHHHHHHHHHHHcccHHHHHccccHHHHHHHHHHHccHHHHHHHHHHHcccHHHHHccccHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHccHHHHHHHHHHHcccHHHHHccccHHHHHHHHHHHccHHHHHHHHHHHHcccccccccEEcc
mmpdisirssmykspdyVEDLGKLIREQKQQQHLQEATQVNSASAADLEKELNifrsgsapptvegslSSIDGLFKKlsdnkggflneeelradpayvNYYYsnvnlnprlpppllskedwRFTQrlrgggevggigdrrkgngslfavqpgfggkeeensggsggggewggdgliglpglglgsrQKSIAEIIQddmshgapvsrhpsrppsrnafEDAIESSETQFAHLHHDlssidglgssankqgmpsaqsigtsashSYASALGaslsrsttpdpqlmarapspriptagvgrassmdkrtvsgplplngvspslkDSAEIVAALSGlnlstdgvadqennsrsqnqheiddrhslfnlqgdsrhmkqhpflgrsesghLLMHsashstkgsypnmgksgvgidmnnaslmadghksalsssnsylkgpctptlngggnspshhQVMGNMnsafsnfslngysmnpsspsmmgspigsgnlpplyeNAAAASAMAgngldartlaslglgpNVMAAAAELQSMNRlgnhtagsalqaplmdplylqYLRSNEYAAAQVAslndpamdigNSYMDLLGLQKAYLGAllspqksqygvpylnksgslnnnlygnpafglgmsypggpllpnspvgsgspvrhgdrnmrfpsgmrnlsggvmgpwhseaggsldeSFASSLLdefksnktkcfeLSEIAGHVVEFSADQYGSRFIQQKLETATTEEKNMVFQEIMPQALSLMTDVFGNYVIQKFFEHGTASQVRELADQLTGHVLTLSLQMYGCRVIQKAIEVVELDQQTQMVKELDGHIMrcvrdqngnhVIQKCIECVPEDAIQFIVLTFYDQVVtlsthpygcRVIQRVLEHChdektqsiMMDEILQSVCMLAQDQYGNYVVQHVLEHGKPHERSAIIKKLTGQIVQMSQQKFASNVIEKCLSFGTPAERQALVNEMLgsieeneplqvcq
mmpdisirssmykspDYVEDLGKLIREQKQQQHLQEATQVNSASAADLEKELNIFrsgsapptvegSLSSIDGLFKKLSDNKGGFLNEEELRADPAYVNYYYSNVNLNPRLPPPLLSKEDWRFTQRLrgggevggigdrrkgngSLFAVQPGFGGKEEENSGGSGGGGEWGGDGLIGLPGLGLGSRQKSIAEIIQDDMSHGAPVSRHPSRPPSRNAFEDAIESSETQFAHLHHDLSSIDGLGSSANKQGMPSAQSIGTSASHSYASALGASLSRSTTPDPQLmarapspriptagvgrassmdkrtvsGPLPLNGVSPSLKDSAEIVAALSGLNLSTDGVADQENNsrsqnqheidDRHSLFNLQGDSRHMKQHPFLGRSESGHLLMHSASHSTKGSYPNMGKSGVGIDMNNASLMADGHKSALSSSNSYLKGPCTPTLNGGGNSPSHHQVMGNMNSAFSNFSLNGYSMNPSSPSMMGSPIGSGNLPPLYENAAAASAMAGNGLDARTLASLGLGPNVMAAAAELQSMNRLGNHTAGSALQAPLMDPLYLQYLRSNEYAAAQVASLNDPAMDIGNSYMDLLGLQKAYLGALLSPQKSQYGVPYLNKSGSLNNNLYGNPAFGLGMSYPGGPLLPNSPVGSGSPVRHGDRNMRFPSGMRNLSGGVMGPWHSEAGGSLDESFASSLLDEFKSNKTKCFELSEIAGHVVEFSADQYGSRFIQQKLETATTEEKNMVFQEIMPQALSLMTDVFGNYVIQKFFEHGTASQVRELADQLTGHVLTLSLQMYGCRVIQKAIEVVELDQQTQMVKELDGHIMRCVRDQNGNHVIQKCIECVPEDAIQFIVLTFYDQVVTLSTHPYGCRVIQRVLEHCHDEKTQSIMMDEILQSVCMLAQDQYGNYVVQHVLEHGKPHERSAIIKKLTGQIVQMSQQKFASNVIEKCLSFGTPAERQALVNEMLgsieeneplqvcq
MMPDISIRSSMYKSPDYVEDLGKLIREQKQQQHLQEATQVNSASAADLEKELNIFRSGSAPPTVEGSLSSIDGLFKKLSDNKGGFLNEEELRADPAyvnyyysnvnlnprlpppllSKEDWRFTQrlrgggevggigdrrkgNGSLFAVQPgfggkeeensggsggggewggdgliglpglglgsRQKSIAEIIQDDMSHGAPVsrhpsrppsrNAFEDAIESSETQFAHLHHDLSSIDGLGSSANKQGMPSAQSIGTSASHSYASALGASLSRSTTPDPQLMARAPSPRIPTAGVGRASSMDKRTVSGPLPLNGVSPSLKDSAEIVAALSGLNLSTDGVADQENNSRSQNQHEIDDRHSLFNLQGDSRHMKQHPFLGRSESGHLLMHSASHSTKGSYPNMGKSGVGIDMNNASLMADGHKSALSSSNSYLKGPCTPTLNGGGNSPSHHQVMGNMNSAFSNFSLngysmnpsspsmmgspigsgnLPPLYENaaaasamaGNGLDARTLASLGLGPNVMAAAAELQSMNRLGNHTAGSALQAPLMDPLYLQYLRSNEYAAAQVASLNDPAMDIGNSYMDLLGLQKAYLGALLSPQKSQYGVPYLNKSGSLNNNLYGNPAFGLGMSYPGGPLLPNSPVGSGSPVRHGDRNMRFPSGMRNLSGGVMGPWHSEAGGSLDESFASSLLDEFKSNKTKCFELSEIAGHVVEFSADQYGSRFIQQKLETATTEEKNMVFQEIMPQALSLMTDVFGNYVIQKFFEHGTASQVRELADQLTGHVLTLSLQMYGCRVIQKAIEVVELDQQTQMVKELDGHIMRCVRDQNGNHVIQKCIECVPEDAIQFIVLTFYDQVVTLSTHPYGCRVIQRVLEHCHDEKTQSIMMDEILQSVCMLAQDQYGNYVVQHVLEHGKPHERSAIIKKLTGQIVQMSQQKFASNVIEKCLSFGTPAERQALVNEMLGSIEENEPLQVCQ
***********************************************************************************GFLNEEELRADPAYVNYYYSNVNLNPRLPPPLLSKEDWRFTQRLRGGGEV**************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************TLASLGLGPNVMAA***************GSALQAPLMDPLYLQYLRSNEYAAAQVASLNDPAMDIGNSYMDLLGLQKAYLGALLSPQKSQYGVPYLNKSGSLNNNLYGNPAFGLGMS*************************************************************FKSNKTKCFELSEIAGHVVEFSADQYGSRFIQQKLETATTEEKNMVFQEIMPQALSLMTDVFGNYVIQKFFEHGTASQVRELADQLTGHVLTLSLQMYGCRVIQKAIEVVELDQQTQMVKELDGHIMRCVRDQNGNHVIQKCIECVPEDAIQFIVLTFYDQVVTLSTHPYGCRVIQRVLEHCHDEKTQSIMMDEILQSVCMLAQDQYGNYVVQHVLEHGKPHERSAIIKKLTGQIVQMSQQKFASNVIEKCLSFGTPA***********************
********************LGKLIR*************************************VEGSLSSIDG****************ELRADPAYVNYYYSNVNLNPRLPPPLL***********************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************T*CFELSEIAGHVVEFSADQYGSRFIQQKLETATTEEKNMVFQEIMPQALSLMTDVFGNYVIQKFFEHGTASQVRELADQLTGHVLTLSLQMYGCRVIQKAIEVVELDQQTQMVKELDGHIMRCVRDQNGNHVIQKCIECVPEDAIQFIVLTFYDQVVTLSTHPYGCRVIQRVLEHCHDEKTQSIMMDEILQSVCMLAQDQYGNYVVQHVLEHGKPHERSAIIKKLTGQIVQMSQQKFASNVIEKCLSFGTPAERQALVNEMLGSIEENEPLQVCQ
MMPDISIRSSMYKSPDYVEDLGKLIREQ****************AADLEKELNIFRSGSAPPTVEGSLSSIDGLFKKLSDNKGGFLNEEELRADPAYVNYYYSNVNLNPRLPPPLLSKEDWRFTQRLRGGGEVGGIGDRRKGNGSLFAVQPGFG************GGEWGGDGLIGLPGLGLGSRQKSIAEIIQDDM******************FEDAIESSETQFAHLHHDLSSIDGLGSSANKQGMPSAQSIGTSASHSYASALGASLSRSTTPDPQLMARAPSPRIPTAGVGRASSMDKRTVSGPLPLNGVSPSLKDSAEIVAALSGLNLSTDG**************EIDDRHSLFNLQGDSRHMKQHPFLGRSESGHLLMHSASHSTKGSYPNMGKSGVGIDMNNASLMADGHKSALSSSNSYLKGPCTPTLNGGGNSPSHHQVMGNMNSAFSNFSLNGYSMNPSSPSMMGSPIGSGNLPPLYENAAAASAMAGNGLDARTLASLGLGPNVMAAAAELQSMNRLGNHTAGSALQAPLMDPLYLQYLRSNEYAAAQVASLNDPAMDIGNSYMDLLGLQKAYLGALLSPQKSQYGVPYLNKSGSLNNNLYGNPAFGLGMSYPGGPLLPNSPVGSGSPVRHGDRNMRFPSGMRNLSGGVMGPWHSEAGGSLDESFASSLLDEFKSNKTKCFELSEIAGHVVEFSADQYGSRFIQQKLETATTEEKNMVFQEIMPQALSLMTDVFGNYVIQKFFEHGTASQVRELADQLTGHVLTLSLQMYGCRVIQKAIEVVELDQQTQMVKELDGHIMRCVRDQNGNHVIQKCIECVPEDAIQFIVLTFYDQVVTLSTHPYGCRVIQRVLEHCHDEKTQSIMMDEILQSVCMLAQDQYGNYVVQHVLEHGKPHERSAIIKKLTGQIVQMSQQKFASNVIEKCLSFGTPAERQALVNEMLGSIEENEPLQVCQ
*************SPDYVEDLGKLIREQKQQQHLQEATQV*SASAADLEKELNIFRSGSAPPTVEGSLSSIDGLFKK******GFLNEEELRADPAYVNYYYSNVNLNPRLPPPLLSKEDWRFTQRLRGGG********************************************************KSIAEIIQDDMSH************************E*QF***********************************************************SPR***************************************************************************************************************************************SSNSYLKGPCTPTLNGGGNSPSHHQVMGNMNSAFSNFSLNGYSMNPSSPSMMGSPIGSGNLPPLYENAAAASAMAGNGLDARTLASLGLGPNVMAAAAELQSMNRLGNHTAGSALQAPLMDPLYLQYLRSNEYAAAQVASLNDPAMDIGNSYMDLLGLQKAYLGALLSPQKSQYGVPYLNKSGSLNNNLYGNPAFGLGMSYPGGPLLPNSPVGSGSPVRHGDRNMRFPSGMRNLSGGVMGPWHSEAGGSLDESFASSLLDEFKSNKTKCFELSEIAGHVVEFSADQYGSRFIQQKLETATTEEKNMVFQEIMPQALSLMTDVFGNYVIQKFFEHGTASQVRELADQLTGHVLTLSLQMYGCRVIQKAIEVVELDQQTQMVKELDGHIMRCVRDQNGNHVIQKCIECVPEDAIQFIVLTFYDQVVTLSTHPYGCRVIQRVLEHCHDEKTQSIMMDEILQSVCMLAQDQYGNYVVQHVLEHGKPHERSAIIKKLTGQIVQMSQQKFASNVIEKCLSFGTPAERQALVNEMLGSIEENEPLQVC*
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MMPDISIRSSMYKSPDYVEDLGKLIREQKQQQHLQEATQVNSASAADLEKELNIFRSGSAPPTVEGSLSSIDGLFKKLSDNKGGFLNEEELRADPAYVNYYYSNVNLNPRLPPPLLSKEDWRFTQRLRGGGEVGGIGDRRKGNGSLFAVQPGFGGKEEENSGGSGGGGEWGGDGLIGLPGLGLGSRQKSIAEIIQDDMSHGAPVSRHPSRPPSRNAFEDAIESSETQFAHLHHDLSSIDGLGSSANKQGMPSAQSIGTSASHSYASALGASLSRSTTPDPQLMARAPSPRIPTAGVGRASSMDKRTVSGPLPLNGVSPSLKDSAEIVAALSGLNLSTDGVADQENNSRSQNQHEIDDRHSLFNLQGDSRHMKQHPFLGRSESGHLLMHSASHSTKGSYPNMGKSGVGIDMNNASLMADGHKSALSSSNSYLKGPCTPTLNGGGNSPSHHQVMGNMNSAFSNFSLNGYSMNPSSPSMMGSPIGSGNLPPLYENAAAASAMAGNGLDARTLASLGLGPNVMAAAAELQSMNRLGNHTAGSALQAPLMDPLYLQYLRSNEYAAAQVASLNDPAMDIGNSYMDLLGLQKAYLGALLSPQKSQYGVPYLNKSGSLNNNLYGNPAFGLGMSYPGGPLLPNSPVGSGSPVRHGDRNMRFPSGMRNLSGGVMGPWHSEAGGSLDESFASSLLDEFKSNKTKCFELSEIAGHVVEFSADQYGSRFIQQKLETATTEEKNMVFQEIMPQALSLMTDVFGNYVIQKFFEHGTASQVRELADQLTGHVLTLSLQMYGCRVIQKAIEVVELDQQTQMVKELDGHIMRCVRDQNGNHVIQKCIECVPEDAIQFIVLTFYDQVVTLSTHPYGCRVIQRVLEHCHDEKTQSIMMDEILQSVCMLAQDQYGNYVVQHVLEHGKPHERSAIIKKLTGQIVQMSQQKFASNVIEKCLSFGTPAERQALVNEMLGSIEENEPLQVCQ
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query967 2.2.26 [Sep-21-2011]
Q9ZW07968 Pumilio homolog 1 OS=Arab yes no 0.873 0.872 0.530 0.0
Q9ZW06972 Pumilio homolog 2 OS=Arab no no 0.873 0.869 0.524 0.0
Q9ZW02964 Pumilio homolog 3 OS=Arab no no 0.871 0.874 0.514 0.0
Q9SS471003 Pumilio homolog 4 OS=Arab no no 0.886 0.854 0.409 1e-178
Q9LJX4961 Pumilio homolog 5 OS=Arab no no 0.425 0.427 0.506 1e-113
Q9C5E7861 Pumilio homolog 6, chloro no no 0.280 0.314 0.613 1e-102
Q8TB721066 Pumilio homolog 2 OS=Homo yes no 0.281 0.255 0.589 3e-97
Q80U581066 Pumilio homolog 2 OS=Mus yes no 0.281 0.255 0.585 5e-97
P25822 1533 Maternal protein pumilio yes no 0.281 0.177 0.593 6e-97
Q146711186 Pumilio homolog 1 OS=Homo no no 0.281 0.229 0.578 8e-97
>sp|Q9ZW07|PUM1_ARATH Pumilio homolog 1 OS=Arabidopsis thaliana GN=APUM1 PE=1 SV=1 Back     alignment and function desciption
 Score =  904 bits (2336), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 519/978 (53%), Positives = 654/978 (66%), Gaps = 133/978 (13%)

Query: 16  DYVEDLGKLIREQKQQQHLQEATQVNSASAADLEKELNIFRSGSAPPTVEGSLSSIDGL- 74
           DY +++G L+ EQ+++Q            A +LE+ELN+FRSGSAPPTV+GS+S+  GL 
Sbjct: 22  DYEKEIGVLLGEQQRRQ----------VEADELERELNLFRSGSAPPTVDGSVSAAGGLF 71

Query: 75  ----------FKKLSDNKGGFLNEEELRADPAYVNYYYSNVNLNPRLPPPLLSKEDWRFT 124
                     F  ++   G   ++EE R DPAY++YYY+N+ LNPRLPPPL+S+ED R  
Sbjct: 72  SGGGGAPFLEFGGVNKGNGFGGDDEEFRKDPAYLSYYYANMKLNPRLPPPLMSREDLRVA 131

Query: 125 QRLRGGGEV-GGIGDRRK--GNGSLFAVQPGFGGKEEENSGGSGGGGEWGGDGLIGLPGL 181
           QRL+G   V GG+GDRRK   N SLF++ PGF G   E +G S    EW  +GLIGLPGL
Sbjct: 132 QRLKGSNNVLGGVGDRRKVNDNRSLFSMPPGFEG---EKTGASAS--EWDANGLIGLPGL 186

Query: 182 GLGSRQKSIAEIIQDDMSHGAPVSRHPSRPPSRNAFEDAIESSETQFAHLHHDLSSIDGL 241
           GLG +QKS A+I Q DM HG PV++ PSRP SRN F++ ++S+              + L
Sbjct: 187 GLGGKQKSFADIFQADMGHGHPVAQQPSRPASRNTFDENVDSN--------------NNL 232

Query: 242 GSSANKQGMPSAQSIGTSASHSYASALGASLSRSTTPDPQLMARAPSPRIPTAGVGRASS 301
             SA       +Q IG  + +SYA+ LG+SLSR+ TPDPQ +AR PSP +   G GR SS
Sbjct: 233 SPSA-------SQGIGAPSPYSYAAVLGSSLSRNGTPDPQAIARVPSPCLTPIGSGRMSS 285

Query: 302 MDKRTVSGPLPLNGVSPSLKDSAEIVAALSGLNLSTD-GVADQENNSRSQNQHEIDD-RH 359
            DKR  S   P NGV+  L +S+++V ALSGLNLS   G+ D     RSQ + +++  R+
Sbjct: 286 NDKRNTSNQSPFNGVTSGLNESSDLVNALSGLNLSCSVGLDD-----RSQAEQDVEKVRN 340

Query: 360 SLFNLQGDSRHMKQHPFLGRSESGHLLMHSASHSTKGSYPNMGKSGVGIDMNNASLMADG 419
            +F LQG    + QH F  +S+  H                                   
Sbjct: 341 YMFGLQGGHNEVNQHEFPNKSDQAH----------------------------------- 365

Query: 420 HKSALSSSNSYLKGPCTPTLNGGGNSPSHHQVMGNMNSAFSNFSLNGYSMNPSSPSMMGS 479
            K+  S  NS L+GP     NGG    + +Q + +      N+ LN Y++NP+  SMM +
Sbjct: 366 -KATGSLRNSQLRGPHGSAYNGGVGLANPYQQLDS-----PNYCLNNYALNPAVASMMAN 419

Query: 480 PIGSGNLPPLYENAAAASAMAGNGLDARTLAS--LGLGPNVMAAAAELQSMNRLGNHT-- 535
            +G+ N  P+Y+N    SA+  +G+D+R      +  G N+    +E +++ R  N    
Sbjct: 420 QLGNNNFAPMYDNV---SALGFSGMDSRHHGRGFVSSGQNL----SESRNLGRFSNRMMG 472

Query: 536 AGSALQAPLMDPLYLQYLRSNEYAAAQVASLNDPAMDI----GNSYMDLLGLQKAYLGAL 591
            G+ LQ+ ++DP+Y QY       A  +  LNDP+MD     G+SYMD+L LQ+AYLGA 
Sbjct: 473 GGAGLQSHMVDPMYNQY-------ADSLDLLNDPSMDRNFMGGSSYMDMLELQRAYLGA- 524

Query: 592 LSPQKSQYGVPYLNKSGSLNNN-LYGNPAFGLGMSYPGGPL----LPNSPVGSGSPVRHG 646
              QKSQYGVPY  KSGS N++  YG+P FG  MSYPG PL    +PNS +   SP+R  
Sbjct: 525 ---QKSQYGVPY--KSGSPNSHSYYGSPTFGSNMSYPGSPLAHHGMPNSLMSPYSPMRRD 579

Query: 647 DRNMRFPSGMRNLSGGVMGPWHSEAGGSLDESFASSLLDEFKSNKTKCFELSEIAGHVVE 706
           + NMRFPS  RN SGG+MG WH +A  S DE F SS+L+EFKSNKT+ FELSEIAGHVVE
Sbjct: 580 EVNMRFPSATRNYSGGLMGSWHMDA--SFDEGFGSSMLEEFKSNKTRGFELSEIAGHVVE 637

Query: 707 FSADQYGSRFIQQKLETATTEEKNMVFQEIMPQALSLMTDVFGNYVIQKFFEHGTASQVR 766
           FS+DQYGSRFIQQKLETATT+EKNMV++EIMPQAL LMTDVFGNYVIQKFFEHG   Q R
Sbjct: 638 FSSDQYGSRFIQQKLETATTDEKNMVYEEIMPQALVLMTDVFGNYVIQKFFEHGLPPQRR 697

Query: 767 ELADQLTGHVLTLSLQMYGCRVIQKAIEVVELDQQTQMVKELDGHIMRCVRDQNGNHVIQ 826
           ELA++L  HVL LSLQMYGCRVIQKAIEVV+LDQ+ +MVKELDGH+MRCVRDQNGNHV+Q
Sbjct: 698 ELAEKLFDHVLPLSLQMYGCRVIQKAIEVVDLDQKIKMVKELDGHVMRCVRDQNGNHVVQ 757

Query: 827 KCIECVPEDAIQFIVLTFYDQVVTLSTHPYGCRVIQRVLEHCHDEKTQSIMMDEILQSVC 886
           KCIECVPE+ I+FI+ TF+  VVTLSTHPYGCRVIQRVLEHCHD  TQS +M+EIL +V 
Sbjct: 758 KCIECVPEENIEFIISTFFGHVVTLSTHPYGCRVIQRVLEHCHDPDTQSKVMEEILSTVS 817

Query: 887 MLAQDQYGNYVVQHVLEHGKPHERSAIIKKLTGQIVQMSQQKFASNVIEKCLSFGTPAER 946
           MLAQDQYGNYVVQHVLEHGKP ER+ IIK+L G+IVQMSQQKFASNV+EKCL+FG P ER
Sbjct: 818 MLAQDQYGNYVVQHVLEHGKPDERTVIIKELAGKIVQMSQQKFASNVVEKCLTFGGPEER 877

Query: 947 QALVNEMLGSIEENEPLQ 964
           + LVNEMLG+ +ENEPLQ
Sbjct: 878 ELLVNEMLGTTDENEPLQ 895
Sequence-specific RNA-binding protein that regulates translation and mRNA stability by binding the 3'-UTR of target mRNAs. Binds the APUM-binding elements (APBEs) in the 3'-UTR mRNA sequence of CLV1, PNH, WUS and FAS2.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9ZW06|PUM2_ARATH Pumilio homolog 2 OS=Arabidopsis thaliana GN=APUM2 PE=1 SV=1 Back     alignment and function description
>sp|Q9ZW02|PUM3_ARATH Pumilio homolog 3 OS=Arabidopsis thaliana GN=APUM3 PE=1 SV=1 Back     alignment and function description
>sp|Q9SS47|PUM4_ARATH Pumilio homolog 4 OS=Arabidopsis thaliana GN=APUM4 PE=1 SV=2 Back     alignment and function description
>sp|Q9LJX4|PUM5_ARATH Pumilio homolog 5 OS=Arabidopsis thaliana GN=APUM5 PE=1 SV=2 Back     alignment and function description
>sp|Q9C5E7|PUM6_ARATH Pumilio homolog 6, chloroplastic OS=Arabidopsis thaliana GN=APUM6 PE=1 SV=1 Back     alignment and function description
>sp|Q8TB72|PUM2_HUMAN Pumilio homolog 2 OS=Homo sapiens GN=PUM2 PE=1 SV=2 Back     alignment and function description
>sp|Q80U58|PUM2_MOUSE Pumilio homolog 2 OS=Mus musculus GN=Pum2 PE=1 SV=2 Back     alignment and function description
>sp|P25822|PUM_DROME Maternal protein pumilio OS=Drosophila melanogaster GN=pum PE=1 SV=2 Back     alignment and function description
>sp|Q14671|PUM1_HUMAN Pumilio homolog 1 OS=Homo sapiens GN=PUM1 PE=1 SV=3 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query967
3594867811015 PREDICTED: pumilio homolog 1-like [Vitis 0.940 0.895 0.697 0.0
2555664301011 pumilio, putative [Ricinus communis] gi| 0.927 0.887 0.698 0.0
255566432999 pumilio, putative [Ricinus communis] gi| 0.926 0.896 0.713 0.0
224098451999 predicted protein [Populus trichocarpa] 0.919 0.889 0.692 0.0
224112727938 predicted protein [Populus trichocarpa] 0.886 0.913 0.700 0.0
2254348771065 PREDICTED: pumilio homolog 1-like [Vitis 0.967 0.878 0.654 0.0
1477752441039 hypothetical protein VITISV_024967 [Viti 0.949 0.883 0.653 0.0
4494598941016 PREDICTED: pumilio homolog 1-like [Cucum 0.935 0.890 0.641 0.0
3565578411054 PREDICTED: pumilio homolog 2-like [Glyci 0.951 0.872 0.624 0.0
2240594641065 predicted protein [Populus trichocarpa] 0.965 0.876 0.613 0.0
>gi|359486781|ref|XP_002278108.2| PREDICTED: pumilio homolog 1-like [Vitis vinifera] Back     alignment and taxonomy information
 Score = 1320 bits (3416), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 692/992 (69%), Positives = 789/992 (79%), Gaps = 83/992 (8%)

Query: 1   MMPDISIRSSMYKSPDYVEDLGKLIREQKQQQHLQEATQVNSASAADLEKELNIFRSGSA 60
           MM DI +RS M  + +Y EDLG LIREQ++Q+           +A+D EKEL+I+RSGSA
Sbjct: 9   MMSDIGMRS-MPGNAEYREDLGLLIREQRRQE----------VAASDREKELSIYRSGSA 57

Query: 61  PPTVEGSLSSIDGLFKKLSDNKGGFL-NEEELRADPAYVNYYYSNVNLNPRLPPPLLSKE 119
           PPTVEGSLS++ GLF    D       +EEELRADPAYVNYYYSNVNLNPRLPPP LSKE
Sbjct: 58  PPTVEGSLSAVGGLFGGGGDGSDTGFASEEELRADPAYVNYYYSNVNLNPRLPPPRLSKE 117

Query: 120 DWRFTQRLRGGGEVGGIG----------DRRK------GNGS-LFAVQPGFGGKEEENSG 162
           DWRF QRL GGG  GG            DRRK      GNGS LF +QPGF G+++EN  
Sbjct: 118 DWRFAQRLHGGGAGGGGSGSSSSVGGIGDRRKVGRGGDGNGSSLFLMQPGFNGQKDENGA 177

Query: 163 GS--GGGGEWGGDGLIGLPGLGLGSRQKSIAEIIQDDMSHGAPVSRHPSRPPSRNAFEDA 220
            S    G EWGGDGLIGLPGLGLGSRQKS+AEIIQDD+ H   VSRHPSRP SRNAF+D 
Sbjct: 178 ESRKAQGVEWGGDGLIGLPGLGLGSRQKSLAEIIQDDIGHATSVSRHPSRPASRNAFDDN 237

Query: 221 IESSETQFAHLHHDLSSIDGLGSSANKQGMPSAQSIGTSASHSYASALGASLSRSTTPDP 280
           +E+SE QF+HLHH+L+S+D L S    Q + + Q++ +SASH+YASALGASLSRSTTPDP
Sbjct: 238 VETSEAQFSHLHHELASMDALRSGTKIQAISAVQNVASSASHTYASALGASLSRSTTPDP 297

Query: 281 QLMARAPSPRIPTAGVGRASSMDKRTVSGPLPLNGVSPSLKDSAEIVAALSGLNLSTDGV 340
           QL+ARAPSPRIPT G GR SSMDKR+ +G    N V P + +SA++VAALSGLNLST+G+
Sbjct: 298 QLVARAPSPRIPTVGGGRTSSMDKRSGNGSNSFNSVPPGIGESADLVAALSGLNLSTNGM 357

Query: 341 ADQENNSRSQNQHEIDDRHSLFNLQGDSRHMKQHPFLGRSESGHLLMHSASHSTKGSYPN 400
            D EN+SRSQ QHEIDD  +LFNLQGD  H+K H +L +S S                  
Sbjct: 358 VDGENHSRSQIQHEIDDHKNLFNLQGDQNHIKHHSYLNKSAS------------------ 399

Query: 401 MGKSGVGIDMNNASLMADGHKSALSSSNSYLKGPCTPTLNGGGNSPSHHQVMGNMNSAFS 460
                                    S+NS+LKGP TPTL  GG+ PSH+Q + N+NS+FS
Sbjct: 400 -------------------------SANSFLKGPSTPTLTSGGSLPSHYQNVDNVNSSFS 434

Query: 461 NFSLNGYSMNPSSPSMMGSPIGSGNLPPLYENAAAASAMAGNGLDARTLAS-LGLGPNVM 519
           N+ L+GY+ NP+SPSMMGS  GSGN+PPL+EN AAASAM   G+D+R L   L LGPN+M
Sbjct: 435 NYGLSGYTFNPASPSMMGSQHGSGNMPPLFENVAAASAMGVTGMDSRALGGGLNLGPNLM 494

Query: 520 AAAAELQSMNRLGNHTAGSALQAPLMDPLYLQYLRSNEYAAAQVASLNDPAMD---IGNS 576
           AAA+ELQ++ R+GNHT G+ALQ P++DPLYLQYLRS EYAA Q  +LNDP MD   +G+S
Sbjct: 495 AAASELQNL-RVGNHTTGNALQVPVVDPLYLQYLRSAEYAATQGVALNDPTMDREYMGSS 553

Query: 577 YMDLLGLQKAYLGALLSPQKSQYGVPYLNKSGSLNNNLYGNPAFGLGMSYPG----GPLL 632
           YMDLLGLQKAYLGALL+ QKSQYGVPYL KS S+N+  YGNP FGLGMSYPG    GPLL
Sbjct: 554 YMDLLGLQKAYLGALLTSQKSQYGVPYLGKSSSMNHGYYGNPQFGLGMSYPGSPLAGPLL 613

Query: 633 PNSPVGSGSPVRHGDRNMRFPSGMRNLSGGVMGPWHSEAGGSLDESFASSLLDEFKSNKT 692
           PNSPVGSGSPVRH +RNMRFPSGMRNL+GGVMG WHSEAGG+LD++F SSLLDEFKSNKT
Sbjct: 614 PNSPVGSGSPVRHNERNMRFPSGMRNLAGGVMGAWHSEAGGNLDDNFVSSLLDEFKSNKT 673

Query: 693 KCFELSEIAGHVVEFSADQYGSRFIQQKLETATTEEKNMVFQEIMPQALSLMTDVFGNYV 752
           KCFELSEI+GHVVEFSADQYGSRFIQQKLETATTEEK+MVF EIMPQALSLMTDVFGNYV
Sbjct: 674 KCFELSEISGHVVEFSADQYGSRFIQQKLETATTEEKDMVFHEIMPQALSLMTDVFGNYV 733

Query: 753 IQKFFEHGTASQVRELADQLTGHVLTLSLQMYGCRVIQKAIEVVELDQQTQMVKELDGHI 812
           IQKFFEHGTASQ+RELADQLTGHVLTLSLQMYGCRVIQKAIEVV+LDQQT+MV ELDG++
Sbjct: 734 IQKFFEHGTASQIRELADQLTGHVLTLSLQMYGCRVIQKAIEVVDLDQQTKMVMELDGNV 793

Query: 813 MRCVRDQNGNHVIQKCIECVPEDAIQFIVLTFYDQVVTLSTHPYGCRVIQRVLEHCHDEK 872
           MRCVRDQNGNHVIQKCIEC+P+D+IQFI+ TFYDQVVTLSTHPYGCRVIQRVLEHCHD K
Sbjct: 794 MRCVRDQNGNHVIQKCIECIPQDSIQFIISTFYDQVVTLSTHPYGCRVIQRVLEHCHDPK 853

Query: 873 TQSIMMDEILQSVCMLAQDQYGNYVVQHVLEHGKPHERSAIIKKLTGQIVQMSQQKFASN 932
           TQ IMMDEILQSV MLAQDQYGNYVVQHVLEHGKPHERS+II +L GQIVQMSQQKFASN
Sbjct: 854 TQRIMMDEILQSVRMLAQDQYGNYVVQHVLEHGKPHERSSIINELAGQIVQMSQQKFASN 913

Query: 933 VIEKCLSFGTPAERQALVNEMLGSIEENEPLQ 964
           V+EKCL+FG P+ERQ LVNEMLGS +ENEPLQ
Sbjct: 914 VVEKCLTFGAPSERQILVNEMLGSTDENEPLQ 945

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255566430|ref|XP_002524200.1| pumilio, putative [Ricinus communis] gi|223536477|gb|EEF38124.1| pumilio, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|255566432|ref|XP_002524201.1| pumilio, putative [Ricinus communis] gi|223536478|gb|EEF38125.1| pumilio, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224098451|ref|XP_002311179.1| predicted protein [Populus trichocarpa] gi|222850999|gb|EEE88546.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224112727|ref|XP_002316273.1| predicted protein [Populus trichocarpa] gi|222865313|gb|EEF02444.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225434877|ref|XP_002283191.1| PREDICTED: pumilio homolog 1-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|147775244|emb|CAN61602.1| hypothetical protein VITISV_024967 [Vitis vinifera] Back     alignment and taxonomy information
>gi|449459894|ref|XP_004147681.1| PREDICTED: pumilio homolog 1-like [Cucumis sativus] gi|449503257|ref|XP_004161912.1| PREDICTED: pumilio homolog 1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356557841|ref|XP_003547219.1| PREDICTED: pumilio homolog 2-like [Glycine max] Back     alignment and taxonomy information
>gi|224059464|ref|XP_002299859.1| predicted protein [Populus trichocarpa] gi|222847117|gb|EEE84664.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query967
TAIR|locus:2043182968 PUM1 "pumilio 1" [Arabidopsis 0.535 0.535 0.600 1.3e-206
TAIR|locus:2043187972 PUM2 "pumilio 2" [Arabidopsis 0.527 0.524 0.601 5.5e-203
TAIR|locus:2043047964 PUM3 "pumilio 3" [Arabidopsis 0.656 0.658 0.513 3.2e-173
TAIR|locus:20763241003 PUM4 "pumilio 4" [Arabidopsis 0.420 0.405 0.598 3.9e-144
TAIR|locus:2087560961 PUM5 "pumilio 5" [Arabidopsis 0.439 0.442 0.494 5.1e-114
TAIR|locus:2117552861 PUM6 "pumilio 6" [Arabidopsis 0.371 0.416 0.517 1.3e-101
UNIPROTKB|B4DG921127 PUM1 "cDNA FLJ56067, highly si 0.281 0.241 0.578 6.5e-97
DICTYBASE|DDB_G0279735785 pufA "RNA binding protein" [Di 0.287 0.354 0.602 2.4e-96
UNIPROTKB|Q5T1Z41189 PUM1 "Pumilio homolog 1" [Homo 0.281 0.228 0.574 9.3e-96
FB|FBgn0003165 1533 pum "pumilio" [Drosophila mela 0.345 0.217 0.514 5.1e-94
TAIR|locus:2043182 PUM1 "pumilio 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1597 (567.2 bits), Expect = 1.3e-206, Sum P(2) = 1.3e-206
 Identities = 335/558 (60%), Positives = 403/558 (72%)

Query:   420 HKSALSSSNSYLKGPCTPTLNGGGNSPSHHQVMGNMNSAFSNFSLXXXXXXXXXXXXXXX 479
             HK+  S  NS L+GP     NGG    + +Q + + N   +N++L               
Sbjct:   365 HKATGSLRNSQLRGPHGSAYNGGVGLANPYQQLDSPNYCLNNYALNPAVASMMANQLGNN 424

Query:   480 XXXXXXLPPLYENXXXXXXXXGNGLDARTLAS--LGLGPNVMAAAAELQSMNRLGNHT-- 535
                     P+Y+N         +G+D+R      +  G N+    +E +++ R  N    
Sbjct:   425 NFA-----PMYDNVSALGF---SGMDSRHHGRGFVSSGQNL----SESRNLGRFSNRMMG 472

Query:   536 AGSALQAPLMDPLYLQYLRSNEYAAAQVASLNDPAMDI----GNSYMDLLGLQKAYLGAL 591
              G+ LQ+ ++DP+Y QY  S +        LNDP+MD     G+SYMD+L LQ+AYLGA 
Sbjct:   473 GGAGLQSHMVDPMYNQYADSLDL-------LNDPSMDRNFMGGSSYMDMLELQRAYLGA- 524

Query:   592 LSPQKSQYGVPYLNKSGSLNNN-LYGNPAFGLGMSYPGGPL----LPNSPVGSGSPVRHG 646
                QKSQYGVPY  KSGS N++  YG+P FG  MSYPG PL    +PNS +   SP+R  
Sbjct:   525 ---QKSQYGVPY--KSGSPNSHSYYGSPTFGSNMSYPGSPLAHHGMPNSLMSPYSPMRRD 579

Query:   647 DRNMRFPSGMRNLSGGVMGPWHSEAGGSLDESFASSLLDEFKSNKTKCFELSEIAGHVVE 706
             + NMRFPS  RN SGG+MG WH +A  S DE F SS+L+EFKSNKT+ FELSEIAGHVVE
Sbjct:   580 EVNMRFPSATRNYSGGLMGSWHMDA--SFDEGFGSSMLEEFKSNKTRGFELSEIAGHVVE 637

Query:   707 FSADQYGSRFIQQKLETATTEEKNMVFQEIMPQALSLMTDVFGNYVIQKFFEHGTASQVR 766
             FS+DQYGSRFIQQKLETATT+EKNMV++EIMPQAL LMTDVFGNYVIQKFFEHG   Q R
Sbjct:   638 FSSDQYGSRFIQQKLETATTDEKNMVYEEIMPQALVLMTDVFGNYVIQKFFEHGLPPQRR 697

Query:   767 ELADQLTGHVLTLSLQMYGCRVIQKAIEVVELDQQTQMVKELDGHIMRCVRDQNGNHVIQ 826
             ELA++L  HVL LSLQMYGCRVIQKAIEVV+LDQ+ +MVKELDGH+MRCVRDQNGNHV+Q
Sbjct:   698 ELAEKLFDHVLPLSLQMYGCRVIQKAIEVVDLDQKIKMVKELDGHVMRCVRDQNGNHVVQ 757

Query:   827 KCIECVPEDAIQFIVLTFYDQVVTLSTHPYGCRVIQRVLEHCHDEKTQSIMMDEILQSVC 886
             KCIECVPE+ I+FI+ TF+  VVTLSTHPYGCRVIQRVLEHCHD  TQS +M+EIL +V 
Sbjct:   758 KCIECVPEENIEFIISTFFGHVVTLSTHPYGCRVIQRVLEHCHDPDTQSKVMEEILSTVS 817

Query:   887 MLAQDQYGNYVVQHVLEHGKPHERSAIIKKLTGQIVQMSQQKFASNVIEKCLSFGTPAER 946
             MLAQDQYGNYVVQHVLEHGKP ER+ IIK+L G+IVQMSQQKFASNV+EKCL+FG P ER
Sbjct:   818 MLAQDQYGNYVVQHVLEHGKPDERTVIIKELAGKIVQMSQQKFASNVVEKCLTFGGPEER 877

Query:   947 QALVNEMLGSIEENEPLQ 964
             + LVNEMLG+ +ENEPLQ
Sbjct:   878 ELLVNEMLGTTDENEPLQ 895
GO:0003723 "RNA binding" evidence=IEA;ISS
GO:0005737 "cytoplasm" evidence=ISM
GO:0003729 "mRNA binding" evidence=IDA
GO:0005829 "cytosol" evidence=RCA
TAIR|locus:2043187 PUM2 "pumilio 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2043047 PUM3 "pumilio 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2076324 PUM4 "pumilio 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2087560 PUM5 "pumilio 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2117552 PUM6 "pumilio 6" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|B4DG92 PUM1 "cDNA FLJ56067, highly similar to Pumilio homolog 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0279735 pufA "RNA binding protein" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
UNIPROTKB|Q5T1Z4 PUM1 "Pumilio homolog 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
FB|FBgn0003165 pum "pumilio" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9ZW07PUM1_ARATHNo assigned EC number0.53060.87380.8729yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
eugene3.00080519
hypothetical protein (999 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query967
cd07920322 cd07920, Pumilio, Pumilio-family RNA binding domai 1e-146
pfam07990365 pfam07990, NABP, Nucleic acid binding protein NABP 1e-119
cd07920322 cd07920, Pumilio, Pumilio-family RNA binding domai 3e-77
COG5099777 COG5099, COG5099, RNA-binding protein of the Puf f 1e-70
COG5099777 COG5099, COG5099, RNA-binding protein of the Puf f 1e-26
COG5099 777 COG5099, COG5099, RNA-binding protein of the Puf f 7e-13
smart0002536 smart00025, Pumilio, Pumilio-like repeats 4e-07
smart0002536 smart00025, Pumilio, Pumilio-like repeats 7e-07
smart0002536 smart00025, Pumilio, Pumilio-like repeats 9e-07
smart0002536 smart00025, Pumilio, Pumilio-like repeats 1e-06
pfam0080634 pfam00806, PUF, Pumilio-family RNA binding repeat 1e-06
smart0002536 smart00025, Pumilio, Pumilio-like repeats 3e-06
smart0002536 smart00025, Pumilio, Pumilio-like repeats 4e-06
pfam0080634 pfam00806, PUF, Pumilio-family RNA binding repeat 1e-05
pfam0080634 pfam00806, PUF, Pumilio-family RNA binding repeat 1e-05
pfam0080634 pfam00806, PUF, Pumilio-family RNA binding repeat 1e-05
pfam0080634 pfam00806, PUF, Pumilio-family RNA binding repeat 7e-05
pfam0080634 pfam00806, PUF, Pumilio-family RNA binding repeat 8e-05
smart0002536 smart00025, Pumilio, Pumilio-like repeats 1e-04
pfam0080634 pfam00806, PUF, Pumilio-family RNA binding repeat 0.002
>gnl|CDD|153420 cd07920, Pumilio, Pumilio-family RNA binding domain Back     alignment and domain information 
 Score =  437 bits (1125), Expect = e-146
 Identities = 152/272 (55%), Positives = 194/272 (71%), Gaps = 2/272 (0%)

Query: 695 FELSEIA-GHVVEFSADQYGSRFIQQKLETATTEEKNMVFQEIMPQALSLMTDVFGNYVI 753
             L +I  GH+VEF+ DQ+GSRF+QQKLE AT EEK ++F EI+P  + LM D FGNYVI
Sbjct: 2   LTLQDIKAGHIVEFAKDQHGSRFLQQKLEEATPEEKELIFDEILPHVVELMVDPFGNYVI 61

Query: 754 QKFFEHGTASQVRELADQLTGHVLTLSLQMYGCRVIQKAIEVVELDQQTQMVKELDGHIM 813
           QK FEHGT  Q  +L +++ GHV+ LSL MYGCRVIQK +E +  +Q + +VKEL GH++
Sbjct: 62  QKLFEHGTEEQRLQLLEKILGHVVRLSLDMYGCRVIQKLLESISEEQISLLVKELRGHVV 121

Query: 814 RCVRDQNGNHVIQKCIECVPEDAIQFIVLTFYDQVVTLSTHPYGCRVIQRVLEHCHDEKT 873
             V+DQNGNHVIQKCIE  P + +QFI+  F    V LSTHPYGCRVIQR LEHC  E+ 
Sbjct: 122 ELVKDQNGNHVIQKCIEKFPPEDLQFIIDAFKGNCVALSTHPYGCRVIQRCLEHC-SEEQ 180

Query: 874 QSIMMDEILQSVCMLAQDQYGNYVVQHVLEHGKPHERSAIIKKLTGQIVQMSQQKFASNV 933
           +  +++EIL+    L QDQ+GNYVVQHVLE G P + S II+KL G IVQ+S  KFASNV
Sbjct: 181 REPLLEEILEHALELVQDQFGNYVVQHVLELGDPDDTSRIIEKLLGNIVQLSCHKFASNV 240

Query: 934 IEKCLSFGTPAERQALVNEMLGSIEENEPLQV 965
           +EKCL   +  ER+ +++E+L S  E   L  
Sbjct: 241 VEKCLKHASKEERELIIDEILASGNETSALDT 272

Puf repeats (also labelled PUM-HD or Pumilio homology domain) mediate sequence specific RNA binding in fly Pumilio, worm FBF-1 and FBF-2, and many other proteins such as vertebrate Pumilio. These proteins function as translational repressors in early embryonic development by binding to sequences in the 3' UTR of target mRNAs, such as the nanos response element (NRE) in fly Hunchback mRNA, or the point mutation element (PME) in worm fem-3 mRNA. Other proteins that contain Puf domains are also plausible RNA binding proteins. Yeast PUF1 (JSN1), for instance, appears to contain a single RNA-recognition motif (RRM) domain. Puf repeat proteins have been observed to function asymmetrically and may be responsible for creating protein gradients involved in the specification of cell fate and differentiation. Puf domains usually occur as a tandem repeat of 8 domains. This model encompasses all 8 tandem repeats. Some proteins may have fewer (canonical) repeats. Length = 322
>gnl|CDD|219685 pfam07990, NABP, Nucleic acid binding protein NABP Back     alignment and domain information
>gnl|CDD|153420 cd07920, Pumilio, Pumilio-family RNA binding domain Back     alignment and domain information
>gnl|CDD|227430 COG5099, COG5099, RNA-binding protein of the Puf family, translational repressor [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|227430 COG5099, COG5099, RNA-binding protein of the Puf family, translational repressor [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|227430 COG5099, COG5099, RNA-binding protein of the Puf family, translational repressor [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|214475 smart00025, Pumilio, Pumilio-like repeats Back     alignment and domain information
>gnl|CDD|214475 smart00025, Pumilio, Pumilio-like repeats Back     alignment and domain information
>gnl|CDD|214475 smart00025, Pumilio, Pumilio-like repeats Back     alignment and domain information
>gnl|CDD|214475 smart00025, Pumilio, Pumilio-like repeats Back     alignment and domain information
>gnl|CDD|201452 pfam00806, PUF, Pumilio-family RNA binding repeat Back     alignment and domain information
>gnl|CDD|214475 smart00025, Pumilio, Pumilio-like repeats Back     alignment and domain information
>gnl|CDD|214475 smart00025, Pumilio, Pumilio-like repeats Back     alignment and domain information
>gnl|CDD|201452 pfam00806, PUF, Pumilio-family RNA binding repeat Back     alignment and domain information
>gnl|CDD|201452 pfam00806, PUF, Pumilio-family RNA binding repeat Back     alignment and domain information
>gnl|CDD|201452 pfam00806, PUF, Pumilio-family RNA binding repeat Back     alignment and domain information
>gnl|CDD|201452 pfam00806, PUF, Pumilio-family RNA binding repeat Back     alignment and domain information
>gnl|CDD|201452 pfam00806, PUF, Pumilio-family RNA binding repeat Back     alignment and domain information
>gnl|CDD|214475 smart00025, Pumilio, Pumilio-like repeats Back     alignment and domain information
>gnl|CDD|201452 pfam00806, PUF, Pumilio-family RNA binding repeat Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 967
PF07990385 NABP: Nucleic acid binding protein NABP; InterPro: 100.0
KOG1488503 consensus Translational repressor Pumilio/PUF3 and 100.0
cd07920322 Pumilio Pumilio-family RNA binding domain. Puf rep 100.0
KOG1488503 consensus Translational repressor Pumilio/PUF3 and 100.0
COG5099777 RNA-binding protein of the Puf family, translation 100.0
cd07920322 Pumilio Pumilio-family RNA binding domain. Puf rep 100.0
KOG2049536 consensus Translational repressor MPT5/PUF4 and re 100.0
COG5099777 RNA-binding protein of the Puf family, translation 100.0
KOG2049536 consensus Translational repressor MPT5/PUF4 and re 100.0
KOG2050 652 consensus Puf family RNA-binding protein [Translat 99.94
KOG2188650 consensus Predicted RNA-binding protein, contains 99.9
KOG2050 652 consensus Puf family RNA-binding protein [Translat 99.82
KOG2188650 consensus Predicted RNA-binding protein, contains 99.75
KOG4574 1007 consensus RNA-binding protein (contains RRM and Pu 99.55
KOG4574 1007 consensus RNA-binding protein (contains RRM and Pu 99.54
PF0080635 PUF: Pumilio-family RNA binding repeat; InterPro: 97.92
PF0080635 PUF: Pumilio-family RNA binding repeat; InterPro: 97.69
smart0002536 Pumilio Pumilio-like repeats. Pumilio-like repeats 97.41
smart0002536 Pumilio Pumilio-like repeats. Pumilio-like repeats 97.38
PF04286367 DUF445: Protein of unknown function (DUF445); Inte 93.39
PRK05686339 fliG flagellar motor switch protein G; Validated 90.81
PF08144148 CPL: CPL (NUC119) domain; InterPro: IPR012959 This 81.41
PRK05686339 fliG flagellar motor switch protein G; Validated 81.28
>PF07990 NABP: Nucleic acid binding protein NABP; InterPro: IPR012940 This domain occurs in some putative nucleic acid binding proteins Back     alignment and domain information 
Probab=100.00  E-value=6.3e-89  Score=750.19  Aligned_cols=377  Identities=58%  Similarity=0.962  Sum_probs=363.2

Q ss_pred             cCCCCCCCCCCccccccCCCCCcCCCCCCCCCCCCCCChHHHHHHhcCCCCCCCCCCcccccccchhhhhhhhhcc-cCC
Q 002096          285 RAPSPRIPTAGVGRASSMDKRTVSGPLPLNGVSPSLKDSAEIVAALSGLNLSTDGVADQENNSRSQNQHEIDDRHS-LFN  363 (967)
Q Consensus       285 r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~-~~~  363 (967)
                      |+|||||||||+ |+.+.|||++.|+++||+++|+++|+|||+|||||||||+++++++|+|+|+|+|||||||++ ||+
T Consensus         1 R~PSp~lpPIG~-Rv~s~eKk~~~g~~sfn~~SS~~~e~aDlvAALSGLNLS~~~~~~ee~~~qSqlqqdvdnqq~~lf~   79 (385)
T PF07990_consen    1 RAPSPCLPPIGV-RVGSVEKKNNGGSSSFNGVSSGINESADLVAALSGLNLSGNRAADEENHMQSQLQQDVDNQQDFLFN   79 (385)
T ss_pred             CCCCCCCCCccc-cccchhcccccCCcccccccCCCCcHHHHHHHHhcCCcCcCccccccccchHHHHHHHHHhhhhhhc
Confidence            899999999999 999999999999999999999999999999999999999999999999999999999999999 999


Q ss_pred             CCCCccccccCccccCccccccccccccCCCCCCCCCCCCCCCccccccccccccccccccCCCCccCCCCCCCccCCCC
Q 002096          364 LQGDSRHMKQHPFLGRSESGHLLMHSASHSTKGSYPNMGKSGVGIDMNNASLMADGHKSALSSSNSYLKGPCTPTLNGGG  443 (967)
Q Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  443 (967)
                      +|++|+|.+||.|+++++++|+++|                             ++++..+.+.++|+|++.++.+++++
T Consensus        80 ~q~~q~~~~Qq~~~~~se~~~l~~~-----------------------------e~~~a~~~~~~s~~~~~~~s~~~~~g  130 (385)
T PF07990_consen   80 VQGGQNQGNQQSYMKKSESGHLNAP-----------------------------ELQKAAFPSGNSYFKNSNASKLSGGG  130 (385)
T ss_pred             CccchhhhhhHHHhhccchhhcccc-----------------------------ccccccCCCccccccCCCcccccCCC
Confidence            9999999999999999999999765                             56677888899999999999999999


Q ss_pred             CCCCCCccCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCccchhhHHhhhhcCCCCCccccccCCCCchhhhhhH
Q 002096          444 NSPSHHQVMGNMNSAFSNFSLNGYSMNPSSPSMMGSPIGSGNLPPLYENAAAASAMAGNGLDARTLASLGLGPNVMAAAA  523 (967)
Q Consensus       444 ~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  523 (967)
                      ..+..||+++.++..+     +||++||++|+||.+++++|++|+|||+++++++++.+++++|.+| +++.++++....
T Consensus       131 ~~~~~~q~~~~~n~~~-----~gy~~n~~~~s~~~~~~~~gn~p~~fd~~~~~s~~~~~~~~s~~~g-~~~~s~~~~~~~  204 (385)
T PF07990_consen  131 GSPFPYQNSDNPNSSF-----GGYALNPALPSMMASQLNNGNIPPLFDNSAAASALASPGMDSRSLG-GGLDSGGNQGAS  204 (385)
T ss_pred             CCCCcccCCCcccccc-----cccccCccchhhhhccccCCCCCccccccccchhhccCCCcccccC-Cccccccccccc
Confidence            9899999988777766     8999999999999999999999999999999999999999999999 889999887888


Q ss_pred             hhhhhcccccCCCCCCCCCCCCChHHHhhhccchHHHHHhhhcCCCCcc---cCCCccchhhhHHHhhhccccccccccC
Q 002096          524 ELQSMNRLGNHTAGSALQAPLMDPLYLQYLRSNEYAAAQVASLNDPAMD---IGNSYMDLLGLQKAYLGALLSPQKSQYG  600 (967)
Q Consensus       524 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~  600 (967)
                      |+++++|+|||+++.++|+|++||+|+||||+++|++++++++.||+++   +|++++|++++|||||++||++||+|||
T Consensus       205 d~~~l~r~gnq~~g~~lq~~~~DP~Y~Qylq~~~~aa~~~a~~~dP~~~R~~~G~s~~dl~~~qKayl~~lL~~QK~Qy~  284 (385)
T PF07990_consen  205 DGQNLNRFGNQVAGSALQSPFVDPLYLQYLQAPEYAAQQAAAQNDPSVDRNYMGSSYMDLLGLQKAYLEALLAQQKSQYG  284 (385)
T ss_pred             chhhhhhhcccccCcccCCCCCCchHHHHhccccchhhhhhccCCcccccCCcCccccchHHHHHHHHHHHHHHHHHhhC
Confidence            9999999999997799999999999999999999999999999999998   9999999999999999999999999999


Q ss_pred             CCcccCCCCCCCCCCCCCCCCCccCCCCCC----CCCCCCCCCCCCccCCCCCCCCCCCCccCCCCCCCCCCCcCCCCCC
Q 002096          601 VPYLNKSGSLNNNLYGNPAFGLGMSYPGGP----LLPNSPVGSGSPVRHGDRNMRFPSGMRNLSGGVMGPWHSEAGGSLD  676 (967)
Q Consensus       601 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~----~~~~~~~~~~~p~~~~~~~~r~~s~~r~~~gg~~~~w~~d~g~~m~  676 (967)
                      +|+ .|+|.++++|||+|.||++|+|||+|    |||++|+|+++|+++++|++||+++|||..||++++||.|.+++||
T Consensus       285 ~P~-~~~~~~n~~y~gnp~~G~gm~Y~gsplaspvlPsspvG~gsp~r~~er~~R~~s~mRn~~GG~~GsW~~d~g~~~d  363 (385)
T PF07990_consen  285 VPL-KKSGSMNHGYYGNPSYGLGMPYPGSPLASPVLPSSPVGPGSPLRHNERNMRFPSGMRNSSGGSMGSWHSDAGGNMD  363 (385)
T ss_pred             Ccc-ccCCCCCCCCCCCCCccccCCCCCCCCcCCCCCCCCCCCCCCCcCCccccccCccccccccccccccccccccccc
Confidence            999 88888999999999999999999999    9999999999999999999999999999999999999999999999


Q ss_pred             hhhhhHHHhhhcCcccccchHH
Q 002096          677 ESFASSLLDEFKSNKTKCFELS  698 (967)
Q Consensus       677 d~~~S~lLqef~snk~r~~~L~  698 (967)
                      +.|++.||||||+||+|+|||.
T Consensus       364 ~~~~sSlLEEFKsNKtr~FELS  385 (385)
T PF07990_consen  364 ENFASSLLEEFKSNKTRSFELS  385 (385)
T ss_pred             ccchhHHHHHHhcCCccceecC
Confidence            9999999999999999999873

One of these proteins has been partially characterised [] and contains two putative phosphorylation sites and a possible dimerisation / leucine zipper domain.
>KOG1488 consensus Translational repressor Pumilio/PUF3 and related RNA-binding proteins (Puf superfamily) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>cd07920 Pumilio Pumilio-family RNA binding domain Back     alignment and domain information
>KOG1488 consensus Translational repressor Pumilio/PUF3 and related RNA-binding proteins (Puf superfamily) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>COG5099 RNA-binding protein of the Puf family, translational repressor [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>cd07920 Pumilio Pumilio-family RNA binding domain Back     alignment and domain information
>KOG2049 consensus Translational repressor MPT5/PUF4 and related RNA-binding proteins (Puf superfamily) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>COG5099 RNA-binding protein of the Puf family, translational repressor [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG2049 consensus Translational repressor MPT5/PUF4 and related RNA-binding proteins (Puf superfamily) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG2050 consensus Puf family RNA-binding protein [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG2188 consensus Predicted RNA-binding protein, contains Pumilio domains [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG2050 consensus Puf family RNA-binding protein [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG2188 consensus Predicted RNA-binding protein, contains Pumilio domains [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only] Back     alignment and domain information
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only] Back     alignment and domain information
>PF00806 PUF: Pumilio-family RNA binding repeat; InterPro: IPR001313 The drosophila pumilio gene codes for an unusual protein that binds through the Puf domain that usually occurs as a tandem repeat of eight domains Back     alignment and domain information
>PF00806 PUF: Pumilio-family RNA binding repeat; InterPro: IPR001313 The drosophila pumilio gene codes for an unusual protein that binds through the Puf domain that usually occurs as a tandem repeat of eight domains Back     alignment and domain information
>smart00025 Pumilio Pumilio-like repeats Back     alignment and domain information
>smart00025 Pumilio Pumilio-like repeats Back     alignment and domain information
>PF04286 DUF445: Protein of unknown function (DUF445); InterPro: IPR007383 This entry contains proteins of unknown function Back     alignment and domain information
>PRK05686 fliG flagellar motor switch protein G; Validated Back     alignment and domain information
>PF08144 CPL: CPL (NUC119) domain; InterPro: IPR012959 This C-terminal domain is found in Penguin-like proteins (CPL) and is associated with Pumilio like repeats [] Back     alignment and domain information
>PRK05686 fliG flagellar motor switch protein G; Validated Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query967
3gvo_A351 Structure And Rna Binding Of The Mouse Pumilio-2 Pu 5e-96
3gvo_A 351 Structure And Rna Binding Of The Mouse Pumilio-2 Pu 9e-08
3q0q_A351 Crystal Structure Of The Pumilio-Homology Domain Fr 7e-95
3q0q_A 351 Crystal Structure Of The Pumilio-Homology Domain Fr 2e-04
1ib2_A349 Crystal Structure Of A Pumilio-Homology Domain Leng 2e-94
1ib2_A 349 Crystal Structure Of A Pumilio-Homology Domain Leng 7e-08
3bsb_A343 Crystal Structure Of Human Pumilio1 In Complex With 2e-94
3bsb_A 343 Crystal Structure Of Human Pumilio1 In Complex With 9e-08
3h3d_X323 Drosophila Pumilio Rna Binding Domain (Puf Domain) 4e-94
3h3d_X 323 Drosophila Pumilio Rna Binding Domain (Puf Domain) 2e-09
2yjy_A350 A Specific And Modular Binding Code For Cytosine Re 2e-93
2yjy_A 350 A Specific And Modular Binding Code For Cytosine Re 7e-08
3k49_A369 Puf3 Rna Binding Domain Bound To Cox17 Rna 3' Utr R 2e-63
3k49_A 369 Puf3 Rna Binding Domain Bound To Cox17 Rna 3' Utr R 3e-07
3bx3_A335 Puf4 T650cC724R MUTANT BOUND TO COX17 RNA 3' UTR Re 5e-40
3bx3_A 335 Puf4 T650cC724R MUTANT BOUND TO COX17 RNA 3' UTR Re 2e-16
4dzs_A357 Crystal Structure Of Yeast Puf4p Rna Binding Domain 3e-38
4dzs_A 357 Crystal Structure Of Yeast Puf4p Rna Binding Domain 2e-15
3bx2_A335 Puf4 Rna Binding Domain Bound To Ho Endonuclease Rn 1e-37
3bx2_A 335 Puf4 Rna Binding Domain Bound To Ho Endonuclease Rn 7e-15
3bwt_A333 Crystal Structure Of The Rna Binding Domain Of Puf4 1e-37
3bwt_A 333 Crystal Structure Of The Rna Binding Domain Of Puf4 8e-15
3qg9_A413 Crystal Structure Of Fbf-2GLD-1 Fbea A7u Mutant Com 9e-26
3k5q_A412 Crystal Structure Of Fbf-2FBE COMPLEX Length = 412 1e-25
3qgb_A413 Crystal Structure Of Fbf-2 R288y Mutant In Complex 8e-25
3v71_A382 Crystal Structure Of Puf-6 In Complex With 5be13 Rn 2e-22
>pdb|3GVO|A Chain A, Structure And Rna Binding Of The Mouse Pumilio-2 Puf Domain Length = 351 Back     alignment and structure 
Iteration: 1

 Score =  349 bits (895), Expect = 5e-96,   Method: Compositional matrix adjust.
 Identities = 161/273 (58%), Positives = 213/273 (78%), Gaps = 1/273 (0%)
Query: 681 SSLLDEFKSNKTKCFELSEIAGHVVEFSADQYGSRFIQQKLETATTEEKNMVFQEIMPQA 740
           S LL++F++N+    +L ++ GH+VEFS DQ+GSRFIQQKLE AT  E+ +VF EI+  A
Sbjct: 5   SRLLEDFRNNRFPNLQLRDLIGHIVEFSQDQHGSRFIQQKLERATPAERQIVFNEILQAA 64
Query: 741 LSLMTDVFGNYVIQKFFEHGTASQVRELADQLTGHVLTLSLQMYGCRVIQKAIEVVELDQ 800
             LMTDVFGNYVIQKFFE G+  Q   LA ++ GHVL L+LQMYGCRVIQKA+E +  DQ
Sbjct: 65  YQLMTDVFGNYVIQKFFEFGSLDQKLALATRIRGHVLPLALQMYGCRVIQKALESISSDQ 124
Query: 801 QTQMVKELDGHIMRCVRDQNGNHVIQKCIECVPEDAIQFIVLTFYDQVVTLSTHPYGCRV 860
           Q++MVKELDGH+++CV+DQNGNHV+QKCIECV   ++QFI+  F  QV  LSTHPYGCRV
Sbjct: 125 QSEMVKELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFVLSTHPYGCRV 184
Query: 861 IQRVLEHCHDEKTQSIMMDEILQSVCMLAQDQYGNYVVQHVLEHGKPHERSAIIKKLTGQ 920
           IQR+LEHC  E+T  I ++E+ Q    L QDQYGNYV+QHVLEHG+P ++S I+ ++ G+
Sbjct: 185 IQRILEHCTAEQTLPI-LEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVSEIRGK 243
Query: 921 IVQMSQQKFASNVIEKCLSFGTPAERQALVNEM 953
           ++ +SQ KFASNV+EKC++  + AER  L++E+
Sbjct: 244 VLALSQHKFASNVVEKCVTHASRAERALLIDEV 276
>pdb|3GVO|A Chain A, Structure And Rna Binding Of The Mouse Pumilio-2 Puf Domain Length = 351 Back     alignment and structure
>pdb|3Q0Q|A Chain A, Crystal Structure Of The Pumilio-Homology Domain From Human Pumilio2 In Complex With P38alpha Nrea Length = 351 Back     alignment and structure
>pdb|3Q0Q|A Chain A, Crystal Structure Of The Pumilio-Homology Domain From Human Pumilio2 In Complex With P38alpha Nrea Length = 351 Back     alignment and structure
>pdb|1IB2|A Chain A, Crystal Structure Of A Pumilio-Homology Domain Length = 349 Back     alignment and structure
>pdb|1IB2|A Chain A, Crystal Structure Of A Pumilio-Homology Domain Length = 349 Back     alignment and structure
>pdb|3BSB|A Chain A, Crystal Structure Of Human Pumilio1 In Complex With Cyclinb Reverse Rna Length = 343 Back     alignment and structure
>pdb|3BSB|A Chain A, Crystal Structure Of Human Pumilio1 In Complex With Cyclinb Reverse Rna Length = 343 Back     alignment and structure
>pdb|3H3D|X Chain X, Drosophila Pumilio Rna Binding Domain (Puf Domain) Length = 323 Back     alignment and structure
>pdb|3H3D|X Chain X, Drosophila Pumilio Rna Binding Domain (Puf Domain) Length = 323 Back     alignment and structure
>pdb|2YJY|A Chain A, A Specific And Modular Binding Code For Cytosine Recognition In Puf Domains Length = 350 Back     alignment and structure
>pdb|2YJY|A Chain A, A Specific And Modular Binding Code For Cytosine Recognition In Puf Domains Length = 350 Back     alignment and structure
>pdb|3K49|A Chain A, Puf3 Rna Binding Domain Bound To Cox17 Rna 3' Utr Recognition Sequence Site B Length = 369 Back     alignment and structure
>pdb|3K49|A Chain A, Puf3 Rna Binding Domain Bound To Cox17 Rna 3' Utr Recognition Sequence Site B Length = 369 Back     alignment and structure
>pdb|3BX3|A Chain A, Puf4 T650cC724R MUTANT BOUND TO COX17 RNA 3' UTR Recognition Sequence Length = 335 Back     alignment and structure
>pdb|3BX3|A Chain A, Puf4 T650cC724R MUTANT BOUND TO COX17 RNA 3' UTR Recognition Sequence Length = 335 Back     alignment and structure
>pdb|4DZS|A Chain A, Crystal Structure Of Yeast Puf4p Rna Binding Domain In Complex With Ho-4be Mutant Rna Length = 357 Back     alignment and structure
>pdb|4DZS|A Chain A, Crystal Structure Of Yeast Puf4p Rna Binding Domain In Complex With Ho-4be Mutant Rna Length = 357 Back     alignment and structure
>pdb|3BX2|A Chain A, Puf4 Rna Binding Domain Bound To Ho Endonuclease Rna 3' Utr Recognition Sequence Length = 335 Back     alignment and structure
>pdb|3BX2|A Chain A, Puf4 Rna Binding Domain Bound To Ho Endonuclease Rna 3' Utr Recognition Sequence Length = 335 Back     alignment and structure
>pdb|3BWT|A Chain A, Crystal Structure Of The Rna Binding Domain Of Puf4 From Saccharomyces Cerevisiae Length = 333 Back     alignment and structure
>pdb|3BWT|A Chain A, Crystal Structure Of The Rna Binding Domain Of Puf4 From Saccharomyces Cerevisiae Length = 333 Back     alignment and structure
>pdb|3QG9|A Chain A, Crystal Structure Of Fbf-2GLD-1 Fbea A7u Mutant Complex Length = 413 Back     alignment and structure
>pdb|3K5Q|A Chain A, Crystal Structure Of Fbf-2FBE COMPLEX Length = 412 Back     alignment and structure
>pdb|3QGB|A Chain A, Crystal Structure Of Fbf-2 R288y Mutant In Complex With Gld-1 Fbea Length = 413 Back     alignment and structure
>pdb|3V71|A Chain A, Crystal Structure Of Puf-6 In Complex With 5be13 Rna Length = 382 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query967
3gvo_A351 Pumilio 2, pumilio homolog 2; RNA-binding, PUF dom 1e-144
3gvo_A351 Pumilio 2, pumilio homolog 2; RNA-binding, PUF dom 1e-71
3k49_A369 MRNA-binding protein PUF3; PUF3, pumilio, RNA bind 1e-136
3k49_A369 MRNA-binding protein PUF3; PUF3, pumilio, RNA bind 2e-65
3k49_A369 MRNA-binding protein PUF3; PUF3, pumilio, RNA bind 1e-04
3bwt_A333 Protein PUF4; pumilio, RNA binding, HO endonucleas 1e-121
3bwt_A333 Protein PUF4; pumilio, RNA binding, HO endonucleas 5e-38
3v71_A382 PUF (pumilio/FBF) domain-containing protein 7, CO 1e-106
3v71_A382 PUF (pumilio/FBF) domain-containing protein 7, CO 1e-48
3v71_A382 PUF (pumilio/FBF) domain-containing protein 7, CO 5e-33
3v71_A 382 PUF (pumilio/FBF) domain-containing protein 7, CO 1e-23
3k62_A412 FEM-3 mRNA-binding factor 2; FBF, FEM-3 binding fa 1e-98
3k62_A412 FEM-3 mRNA-binding factor 2; FBF, FEM-3 binding fa 8e-49
3k62_A412 FEM-3 mRNA-binding factor 2; FBF, FEM-3 binding fa 4e-27
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 9e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-05
>3gvo_A Pumilio 2, pumilio homolog 2; RNA-binding, PUF domain, RNA binding protein; HET: DTD; 1.60A {Mus musculus} PDB: 3gvt_A 3q0q_A 3q0r_A 3q0s_A 1ib2_A 1m8w_A 1m8x_A 1m8y_A 1m8z_A 3q0l_A 3q0m_A 3q0n_A 3q0o_A 3q0p_A 2yjy_A 3bsx_A 3bsb_A 3h3d_X Length = 351 Back     alignment and structure
 Score =  433 bits (1115), Expect = e-144
 Identities = 161/282 (57%), Positives = 214/282 (75%), Gaps = 1/282 (0%)

Query: 681 SSLLDEFKSNKTKCFELSEIAGHVVEFSADQYGSRFIQQKLETATTEEKNMVFQEIMPQA 740
           S LL++F++N+    +L ++ GH+VEFS DQ+GSRFIQQKLE AT  E+ +VF EI+  A
Sbjct: 5   SRLLEDFRNNRFPNLQLRDLIGHIVEFSQDQHGSRFIQQKLERATPAERQIVFNEILQAA 64

Query: 741 LSLMTDVFGNYVIQKFFEHGTASQVRELADQLTGHVLTLSLQMYGCRVIQKAIEVVELDQ 800
             LMTDVFGNYVIQKFFE G+  Q   LA ++ GHVL L+LQMYGCRVIQKA+E +  DQ
Sbjct: 65  YQLMTDVFGNYVIQKFFEFGSLDQKLALATRIRGHVLPLALQMYGCRVIQKALESISSDQ 124

Query: 801 QTQMVKELDGHIMRCVRDQNGNHVIQKCIECVPEDAIQFIVLTFYDQVVTLSTHPYGCRV 860
           Q++MVKELDGH+++CV+DQNGNHV+QKCIECV   ++QFI+  F  QV  LSTHPYGCRV
Sbjct: 125 QSEMVKELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFVLSTHPYGCRV 184

Query: 861 IQRVLEHCHDEKTQSIMMDEILQSVCMLAQDQYGNYVVQHVLEHGKPHERSAIIKKLTGQ 920
           IQR+LEHC  E+T  I ++E+ Q    L QDQYGNYV+QHVLEHG+P ++S I+ ++ G+
Sbjct: 185 IQRILEHCTAEQTLPI-LEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVSEIRGK 243

Query: 921 IVQMSQQKFASNVIEKCLSFGTPAERQALVNEMLGSIEENEP 962
           ++ +SQ KFASNV+EKC++  + AER  L++E+    +    
Sbjct: 244 VLALSQHKFASNVVEKCVTHASRAERALLIDEVCCQNDGPHS 285
>3gvo_A Pumilio 2, pumilio homolog 2; RNA-binding, PUF domain, RNA binding protein; HET: DTD; 1.60A {Mus musculus} PDB: 3gvt_A 3q0q_A 3q0r_A 3q0s_A 1ib2_A 1m8w_A 1m8x_A 1m8y_A 1m8z_A 3q0l_A 3q0m_A 3q0n_A 3q0o_A 3q0p_A 2yjy_A 3bsx_A 3bsb_A 3h3d_X Length = 351 Back     alignment and structure
>3k49_A MRNA-binding protein PUF3; PUF3, pumilio, RNA binding, mitochondrial mRNA,, membrane, mitochondrion; HET: CIT; 2.50A {Saccharomyces cerevisiae} PDB: 3k4e_A Length = 369 Back     alignment and structure
>3k49_A MRNA-binding protein PUF3; PUF3, pumilio, RNA binding, mitochondrial mRNA,, membrane, mitochondrion; HET: CIT; 2.50A {Saccharomyces cerevisiae} PDB: 3k4e_A Length = 369 Back     alignment and structure
>3k49_A MRNA-binding protein PUF3; PUF3, pumilio, RNA binding, mitochondrial mRNA,, membrane, mitochondrion; HET: CIT; 2.50A {Saccharomyces cerevisiae} PDB: 3k4e_A Length = 369 Back     alignment and structure
>3bwt_A Protein PUF4; pumilio, RNA binding, HO endonuclease, transcription, RNA binding protein; 2.69A {Saccharomyces cerevisiae} PDB: 4dzs_A 3bx2_A 3bx3_A Length = 333 Back     alignment and structure
>3bwt_A Protein PUF4; pumilio, RNA binding, HO endonuclease, transcription, RNA binding protein; 2.69A {Saccharomyces cerevisiae} PDB: 4dzs_A 3bx2_A 3bx3_A Length = 333 Back     alignment and structure
>3v71_A PUF (pumilio/FBF) domain-containing protein 7, CO transcript evidence; PUF repeats, RNA binding protein-RNA complex; HET: EPE; 2.90A {Caenorhabditis elegans} Length = 382 Back     alignment and structure
>3v71_A PUF (pumilio/FBF) domain-containing protein 7, CO transcript evidence; PUF repeats, RNA binding protein-RNA complex; HET: EPE; 2.90A {Caenorhabditis elegans} Length = 382 Back     alignment and structure
>3v71_A PUF (pumilio/FBF) domain-containing protein 7, CO transcript evidence; PUF repeats, RNA binding protein-RNA complex; HET: EPE; 2.90A {Caenorhabditis elegans} Length = 382 Back     alignment and structure
>3v71_A PUF (pumilio/FBF) domain-containing protein 7, CO transcript evidence; PUF repeats, RNA binding protein-RNA complex; HET: EPE; 2.90A {Caenorhabditis elegans} Length = 382 Back     alignment and structure
>3k62_A FEM-3 mRNA-binding factor 2; FBF, FEM-3 binding factor, PUF, RNA-binding specificity, base flipping, base stacking; 1.90A {Caenorhabditis elegans} PDB: 3k5y_A 3k5z_A 3k61_A 3k5q_A 3k64_A 3qg9_A 3v6y_A 3v74_A 3qgc_A 3qgb_A Length = 412 Back     alignment and structure
>3k62_A FEM-3 mRNA-binding factor 2; FBF, FEM-3 binding factor, PUF, RNA-binding specificity, base flipping, base stacking; 1.90A {Caenorhabditis elegans} PDB: 3k5y_A 3k5z_A 3k61_A 3k5q_A 3k64_A 3qg9_A 3v6y_A 3v74_A 3qgc_A 3qgb_A Length = 412 Back     alignment and structure
>3k62_A FEM-3 mRNA-binding factor 2; FBF, FEM-3 binding factor, PUF, RNA-binding specificity, base flipping, base stacking; 1.90A {Caenorhabditis elegans} PDB: 3k5y_A 3k5z_A 3k61_A 3k5q_A 3k64_A 3qg9_A 3v6y_A 3v74_A 3qgc_A 3qgb_A Length = 412 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query967
3gvo_A351 Pumilio 2, pumilio homolog 2; RNA-binding, PUF dom 100.0
3k49_A369 MRNA-binding protein PUF3; PUF3, pumilio, RNA bind 100.0
3k62_A412 FEM-3 mRNA-binding factor 2; FBF, FEM-3 binding fa 100.0
3v71_A382 PUF (pumilio/FBF) domain-containing protein 7, CO 100.0
3bwt_A333 Protein PUF4; pumilio, RNA binding, HO endonucleas 100.0
3gvo_A351 Pumilio 2, pumilio homolog 2; RNA-binding, PUF dom 100.0
3k62_A412 FEM-3 mRNA-binding factor 2; FBF, FEM-3 binding fa 100.0
3v71_A382 PUF (pumilio/FBF) domain-containing protein 7, CO 100.0
3k49_A369 MRNA-binding protein PUF3; PUF3, pumilio, RNA bind 100.0
3bwt_A333 Protein PUF4; pumilio, RNA binding, HO endonucleas 100.0
>3gvo_A Pumilio 2, pumilio homolog 2; RNA-binding, PUF domain, RNA binding protein; HET: DTD; 1.60A {Mus musculus} SCOP: a.118.1.8 PDB: 3gvt_A 3q0q_A 3q0r_A 3q0s_A 1ib2_A 1m8w_A 1m8x_A 1m8y_A 1m8z_A 3q0l_A 3q0m_A 3q0n_A 3q0o_A 3q0p_A 2yjy_A 3bsx_A 3bsb_A 3h3d_X Back     alignment and structure
Probab=100.00  E-value=2.5e-54  Score=478.16  Aligned_cols=280  Identities=56%  Similarity=0.967  Sum_probs=271.2

Q ss_pred             hhHHHhhhcCcccccchHHHHHHHHHHHhhCcccCHHHHHhhhcCCHHHHHHHHHHHHHHHHHhhhccccchhHhhhhcc
Q 002096          680 ASSLLDEFKSNKTKCFELSEIAGHVVEFSADQYGSRFIQQKLETATTEEKNMVFQEIMPQALSLMTDVFGNYVIQKFFEH  759 (967)
Q Consensus       680 ~S~lLqef~snk~r~~~L~eI~G~IveLa~Dq~GSRVLQklLE~~S~Eer~~IfeEI~~~lleLmtD~fGN~VVQKLLE~  759 (967)
                      +|.++++|++++.+.++|++|.|+++++|+||+|||+||++|+.+++++++.||+++.+++.+||+|+||||||||+|++
T Consensus         4 ~~~l~e~~r~~~~~~~~l~~~~g~i~~la~dq~gsR~lQ~~l~~~~~~~~~~i~~ei~~~~~~L~~d~~gn~vvQklle~   83 (351)
T 3gvo_A            4 RSRLLEDFRNNRFPNLQLRDLIGHIVEFSQDQHGSRFIQQKLERATPAERQIVFNEILQAAYQLMTDVFGNYVIQKFFEF   83 (351)
T ss_dssp             CCHHHHHHHTTCCTTCCGGGGTTCHHHHHTSHHHHHHHHHHHHHCCHHHHHHHHHHHGGGHHHHHTSTTHHHHHHHHHHH
T ss_pred             ccHHHHHHhCCCCCCcCHHHHHhHHHHHhcCCcchHHHHHHHhhCCHHHHHHHHHHHHHhHHHHHhChhhhHHHHHHHhh
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHhhHHHhhhccccchhhhhhhhhcCHHHHHHHHHHHhhHHhHhhcccCCCchhhhhhhcCChhhHHH
Q 002096          760 GTASQVRELADQLTGHVLTLSLQMYGCRVIQKAIEVVELDQQTQMVKELDGHIMRCVRDQNGNHVIQKCIECVPEDAIQF  839 (967)
Q Consensus       760 ~s~Eqr~~Iie~L~g~IveLA~hkyGcrVLQklLE~as~eq~~~Lv~EL~g~il~Lv~DqnGNhVIQkLLE~~~~e~iq~  839 (967)
                      ++++++..|++.+.+++++|+.|+|||||||++|+.++.+++..|++||.+++..|++|++||||||+||++++++.+++
T Consensus        84 ~~~~~~~~i~~~i~g~~~~l~~~~~G~rvvQk~le~~~~~~~~~i~~el~~~~~~L~~d~~Gn~ViQk~l~~~~~~~~~~  163 (351)
T 3gvo_A           84 GSLDQKLALATRIRGHVLPLALQMYGCRVIQKALESISSDQQSEMVKELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQF  163 (351)
T ss_dssp             CCHHHHHHHHHHHTTCHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHGGGTTCHHHHHHSTTHHHHHHHHHHHSCGGGTHH
T ss_pred             CCHHHHHHHHHHHHhhHHHHhhCHHhHHHHHHHHHhCCHHHHHHHHHHhhhhHHHHHHhhhhhHHHHHHHHhCCHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhcCcchhHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 002096          840 IVLTFYDQVVTLSTHPYGCRVIQRVLEHCHDEKTQSIMMDEILQSVCMLAQDQYGNYVVQHVLEHGKPHERSAIIKKLTG  919 (967)
Q Consensus       840 IId~L~~~lv~LS~hkyGSrVIQkILE~csde~~r~~LLdeLle~L~~La~DqyGNYVVQ~ILe~~~pkeRk~IIk~Lkg  919 (967)
                      |++.+.+++..|++|+|||+|||+||++|.. +.+..|+++|.+++..|++|+|||||||++|++++++.|+.|++.|++
T Consensus       164 i~~~~~~~~~~ls~~~~G~~Vvq~~le~~~~-~~~~~ii~~l~~~~~~L~~d~~Gn~ViQ~~l~~~~~~~~~~i~~~l~~  242 (351)
T 3gvo_A          164 IIDAFKGQVFVLSTHPYGCRVIQRILEHCTA-EQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVSEIRG  242 (351)
T ss_dssp             HHHHTTTTHHHHHTSTTHHHHHHHHHHHSCH-HHHHHHHHHHHTTHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHHTTTT
T ss_pred             HHHHHHHHHHHHHhCcHhHHHHHHHHHHCCH-HHHHHHHHHHhhhHHhcCCCchHHHHHHHHHHhCchhhHHHHHHHHHH
Confidence            9999999999999999999999999999875 456789999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCccHHHHHHHHHhhCCHHHHHHHHHHHhcCCCCC
Q 002096          920 QIVQMSQQKFASNVIEKCLSFGTPAERQALVNEMLGSIEEN  960 (967)
Q Consensus       920 nIveLS~nKfGS~VVEKcL~~~d~~eRk~II~ELl~~~Den  960 (967)
                      ++.+||+|||||+||||||+++++++|+.|++||+...++.
T Consensus       243 ~~~~Ls~~k~gs~Vvek~l~~~~~~~r~~ii~el~~~~~~~  283 (351)
T 3gvo_A          243 KVLALSQHKFASNVVEKCVTHASRAERALLIDEVCCQNDGP  283 (351)
T ss_dssp             CHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHHHHHSCEETT
T ss_pred             HHHHHhcCcHHHHHHHHHHHhCCHHHHHHHHHHHhcccCCC
Confidence            99999999999999999999999999999999999865443
>3k49_A MRNA-binding protein PUF3; PUF3, pumilio, RNA binding, mitochondrial mRNA,, membrane, mitochondrion; HET: CIT; 2.50A {Saccharomyces cerevisiae} SCOP: a.118.1.0 PDB: 3k4e_A Back     alignment and structure
>3k62_A FEM-3 mRNA-binding factor 2; FBF, FEM-3 binding factor, PUF, RNA-binding specificity, base flipping, base stacking; 1.90A {Caenorhabditis elegans} PDB: 3k5y_A 3k5z_A 3k61_A 3k5q_A 3k64_A 3qg9_A 3v6y_A 3v74_A 3qgc_A 3qgb_A Back     alignment and structure
>3v71_A PUF (pumilio/FBF) domain-containing protein 7, CO transcript evidence; PUF repeats, RNA binding protein-RNA complex; HET: EPE; 2.90A {Caenorhabditis elegans} Back     alignment and structure
>3bwt_A Protein PUF4; pumilio, RNA binding, HO endonuclease, transcription, RNA binding protein; 2.69A {Saccharomyces cerevisiae} PDB: 4dzs_A 3bx2_A 3bx3_A Back     alignment and structure
>3gvo_A Pumilio 2, pumilio homolog 2; RNA-binding, PUF domain, RNA binding protein; HET: DTD; 1.60A {Mus musculus} SCOP: a.118.1.8 PDB: 3gvt_A 3q0q_A 3q0r_A 3q0s_A 1ib2_A 1m8w_A 1m8x_A 1m8y_A 1m8z_A 3q0l_A 3q0m_A 3q0n_A 3q0o_A 3q0p_A 2yjy_A 3bsx_A 3bsb_A 3h3d_X Back     alignment and structure
>3k62_A FEM-3 mRNA-binding factor 2; FBF, FEM-3 binding factor, PUF, RNA-binding specificity, base flipping, base stacking; 1.90A {Caenorhabditis elegans} PDB: 3k5y_A 3k5z_A 3k61_A 3k5q_A 3k64_A 3qg9_A 3v6y_A 3v74_A 3qgc_A 3qgb_A Back     alignment and structure
>3v71_A PUF (pumilio/FBF) domain-containing protein 7, CO transcript evidence; PUF repeats, RNA binding protein-RNA complex; HET: EPE; 2.90A {Caenorhabditis elegans} Back     alignment and structure
>3k49_A MRNA-binding protein PUF3; PUF3, pumilio, RNA binding, mitochondrial mRNA,, membrane, mitochondrion; HET: CIT; 2.50A {Saccharomyces cerevisiae} SCOP: a.118.1.0 PDB: 3k4e_A Back     alignment and structure
>3bwt_A Protein PUF4; pumilio, RNA binding, HO endonuclease, transcription, RNA binding protein; 2.69A {Saccharomyces cerevisiae} PDB: 4dzs_A 3bx2_A 3bx3_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 967
d1m8za_339 a.118.1.8 (A:) Pumilio 1 {Human (Homo sapiens) [Ta 1e-95
d1m8za_339 a.118.1.8 (A:) Pumilio 1 {Human (Homo sapiens) [Ta 6e-47
>d1m8za_ a.118.1.8 (A:) Pumilio 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 339 Back     information, alignment and structure

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Pumilio repeat
domain: Pumilio 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  303 bits (777), Expect = 1e-95
 Identities = 157/282 (55%), Positives = 212/282 (75%), Gaps = 1/282 (0%)

Query: 681 SSLLDEFKSNKTKCFELSEIAGHVVEFSADQYGSRFIQQKLETATTEEKNMVFQEIMPQA 740
           S LL++F++N+    +L EIAGH++EFS DQ+GSRFIQ KLE AT  E+ +VF EI+  A
Sbjct: 3   SRLLEDFRNNRYPNLQLREIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAA 62

Query: 741 LSLMTDVFGNYVIQKFFEHGTASQVRELADQLTGHVLTLSLQMYGCRVIQKAIEVVELDQ 800
             LM DVFGNYVIQKFFE G+  Q   LA+++ GHVL+L+LQMYGCRVIQKA+E +  DQ
Sbjct: 63  YQLMVDVFGNYVIQKFFEFGSLEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQ 122

Query: 801 QTQMVKELDGHIMRCVRDQNGNHVIQKCIECVPEDAIQFIVLTFYDQVVTLSTHPYGCRV 860
           Q +MV+ELDGH+++CV+DQNGNHV+QKCIECV   ++QFI+  F  QV  LSTHPYGCRV
Sbjct: 123 QNEMVRELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRV 182

Query: 861 IQRVLEHCHDEKTQSIMMDEILQSVCMLAQDQYGNYVVQHVLEHGKPHERSAIIKKLTGQ 920
           IQR+LEHC  ++T   +++E+ Q    L QDQYGNYV+QHVLEHG+P ++S I+ ++ G 
Sbjct: 183 IQRILEHCLPDQTL-PILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGN 241

Query: 921 IVQMSQQKFASNVIEKCLSFGTPAERQALVNEMLGSIEENEP 962
           ++ +SQ KFASNV+EKC++  +  ER  L++E+    +    
Sbjct: 242 VLVLSQHKFASNVVEKCVTHASRTERAVLIDEVCTMNDGPHS 283
>d1m8za_ a.118.1.8 (A:) Pumilio 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 339 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query967
d1m8za_339 Pumilio 1 {Human (Homo sapiens) [TaxId: 9606]} 100.0
d1m8za_339 Pumilio 1 {Human (Homo sapiens) [TaxId: 9606]} 100.0
>d1m8za_ a.118.1.8 (A:) Pumilio 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Pumilio repeat
domain: Pumilio 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.6e-48  Score=418.47  Aligned_cols=281  Identities=56%  Similarity=0.957  Sum_probs=270.8

Q ss_pred             hhHHHhhhcCcccccchHHHHHHHHHHHhhCcccCHHHHHhhhcCCHHHHHHHHHHHHHHHHHhhhccccchhHhhhhcc
Q 002096          680 ASSLLDEFKSNKTKCFELSEIAGHVVEFSADQYGSRFIQQKLETATTEEKNMVFQEIMPQALSLMTDVFGNYVIQKFFEH  759 (967)
Q Consensus       680 ~S~lLqef~snk~r~~~L~eI~G~IveLa~Dq~GSRVLQklLE~~S~Eer~~IfeEI~~~lleLmtD~fGN~VVQKLLE~  759 (967)
                      +++++++|++++.+.++|++++|+++++|+||+|||+||++|+.+++++++.||++|.+++.+||+|+||||||||+|++
T Consensus         2 ~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~q~gSr~lQ~~l~~~~~~~~~~I~~~l~~~~~~L~~~~~gn~vvqkll~~   81 (339)
T d1m8za_           2 RSRLLEDFRNNRYPNLQLREIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNYVIQKFFEF   81 (339)
T ss_dssp             CCHHHHHHHTTCCTTCCGGGGTTCHHHHHTSHHHHHHHHHHHHHCCHHHHHHHHHHHGGGHHHHHTSTTHHHHHHHHHHH
T ss_pred             CchHhHHhhcCCCCCCcHHHHHhHHHHHhcCchhhHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhhCcccchhHHHHHhh
Confidence            47899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHhhHHHhhhccccchhhhhhhhhcCHHHHHHHHHHHhhHHhHhhcccCCCchhhhhhhcCChhhHHH
Q 002096          760 GTASQVRELADQLTGHVLTLSLQMYGCRVIQKAIEVVELDQQTQMVKELDGHIMRCVRDQNGNHVIQKCIECVPEDAIQF  839 (967)
Q Consensus       760 ~s~Eqr~~Iie~L~g~IveLA~hkyGcrVLQklLE~as~eq~~~Lv~EL~g~il~Lv~DqnGNhVIQkLLE~~~~e~iq~  839 (967)
                      ++++++..|++.+.+++.+|+.|+|||+|||++++.+..+++..++.+|.+++..++.|.+|+||+|+|++..+++.++.
T Consensus        82 ~~~~~~~~i~~~l~~~~~~L~~~~~gs~Vvq~l~~~~~~~~~~~l~~el~~~~~~l~~d~~~~~v~~~~l~~~~~~~~~~  161 (339)
T d1m8za_          82 GSLEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQNEMVRELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQF  161 (339)
T ss_dssp             SCHHHHHHHHHHHTTCHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHHTTTTCHHHHHHSTTHHHHHHHHHHHSCGGGGHH
T ss_pred             CCHHHHHHHHHHHHhhHHHHhcccccchHHHhhhccCCHHHHHHHHHHHhhhhHHHhcCCCcchHHHHHHHhcCHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhcCcchhHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 002096          840 IVLTFYDQVVTLSTHPYGCRVIQRVLEHCHDEKTQSIMMDEILQSVCMLAQDQYGNYVVQHVLEHGKPHERSAIIKKLTG  919 (967)
Q Consensus       840 IId~L~~~lv~LS~hkyGSrVIQkILE~csde~~r~~LLdeLle~L~~La~DqyGNYVVQ~ILe~~~pkeRk~IIk~Lkg  919 (967)
                      |++.+.+++.++++|++||+|+|++|+.+.. +.+..+++.+.+.+..|++|+|||||||++|++++++.|+.|++.|++
T Consensus       162 i~~~~~~~~~~l~~~~~g~~vlq~~l~~~~~-~~~~~l~~~l~~~~~~L~~~~~G~~vvq~~l~~~~~~~~~~i~~~l~~  240 (339)
T d1m8za_         162 IIDAFKGQVFALSTHPYGCRVIQRILEHCLP-DQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRG  240 (339)
T ss_dssp             HHHHTTTTHHHHHTSTTHHHHHHHHHHHSCH-HHHHHHHHHHHHTHHHHTTSTTHHHHHHHHHHHSCHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHhCcchhHHHHHHHhcCCH-HHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            9999999999999999999999999999865 456789999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCccHHHHHHHHHhhCCHHHHHHHHHHHhcCCCCCC
Q 002096          920 QIVQMSQQKFASNVIEKCLSFGTPAERQALVNEMLGSIEENE  961 (967)
Q Consensus       920 nIveLS~nKfGS~VVEKcL~~~d~~eRk~II~ELl~~~Den~  961 (967)
                      ++.+|+++||||+|||+|++++++++|+.+++|++...+..+
T Consensus       241 ~~~~l~~~k~gS~vve~~l~~~~~~~~~~~~~~l~~~~~~~~  282 (339)
T d1m8za_         241 NVLVLSQHKFASNVVEKCVTHASRTERAVLIDEVCTMNDGPH  282 (339)
T ss_dssp             CHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHHHHHHCEETTE
T ss_pred             hHHHHHcchhHHHHHHHHHHhCCHHHHHHHHHHHHhcccCch
Confidence            999999999999999999999999999999999987655443
>d1m8za_ a.118.1.8 (A:) Pumilio 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure