Citrus Sinensis ID: 002099
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 967 | 2.2.26 [Sep-21-2011] | |||||||
| Q9LKW9 | 1146 | Sodium/hydrogen exchanger | yes | no | 0.945 | 0.797 | 0.717 | 0.0 | |
| Q3YL57 | 756 | Sodium/hydrogen exchanger | no | no | 0.758 | 0.969 | 0.691 | 0.0 | |
| Q6UJY2 | 1175 | Sodium/hydrogen exchanger | yes | no | 0.512 | 0.422 | 0.248 | 2e-35 | |
| P26434 | 717 | Sodium/hydrogen exchanger | yes | no | 0.397 | 0.535 | 0.260 | 1e-29 | |
| Q8BUE1 | 797 | Sodium/hydrogen exchanger | no | no | 0.397 | 0.481 | 0.260 | 2e-29 | |
| Q4G0N8 | 1177 | Sodium/hydrogen exchanger | yes | no | 0.496 | 0.407 | 0.236 | 2e-27 | |
| Q6AI14 | 798 | Sodium/hydrogen exchanger | no | no | 0.411 | 0.498 | 0.247 | 3e-27 | |
| Q01345 | 759 | Na(+)/H(+) exchanger beta | N/A | no | 0.400 | 0.509 | 0.251 | 1e-26 | |
| Q61165 | 820 | Sodium/hydrogen exchanger | no | no | 0.402 | 0.474 | 0.254 | 4e-25 | |
| Q8RWU6 | 535 | Sodium/hydrogen exchanger | no | no | 0.466 | 0.842 | 0.243 | 6e-25 |
| >sp|Q9LKW9|NHX7_ARATH Sodium/hydrogen exchanger 7 OS=Arabidopsis thaliana GN=NHX7 PE=1 SV=1 | Back alignment and function desciption |
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Score = 1330 bits (3442), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 661/921 (71%), Positives = 780/921 (84%), Gaps = 7/921 (0%)
Query: 33 PTDAVIFVGISLVLGIACRHLLRGTRVPYTVALLIIGIALGSLEYGTSHQLGKIGDGIRL 92
P DAV+FVG+SLVLGIA RHLLRGTRVPYTVALL+IGIALGSLEYG H LGKIG GIR+
Sbjct: 33 PVDAVLFVGMSLVLGIASRHLLRGTRVPYTVALLVIGIALGSLEYGAKHNLGKIGHGIRI 92
Query: 93 WASIDPDLLLAVFLPALLFESSFAMEVHQIKRCLVQMILLAGPGVMISTFFLGAALKLTF 152
W IDP+LLLAVFLPALLFESSF+MEVHQIKRCL QM+LLA PGV+IST LG+ +K+TF
Sbjct: 93 WNEIDPELLLAVFLPALLFESSFSMEVHQIKRCLGQMVLLAVPGVLISTACLGSLVKVTF 152
Query: 153 PYDWSWKTSLLLGGLLSATDPVAVVALLKELGASKKLNTIIEGESLMNDGTAIVVYQLFF 212
PY+W WKTSLLLGGLLSATDPVAVVALLKELGASKKL+TIIEGESLMNDGTAIVV+QLF
Sbjct: 153 PYEWDWKTSLLLGGLLSATDPVAVVALLKELGASKKLSTIIEGESLMNDGTAIVVFQLFL 212
Query: 213 QMVLGKSFGWGAIIKFLAQVSLGAVGMGLAFGIASVLWLGFIFNDTVIEIALTLAVSYIA 272
+M +G++ W +IIKFL +V+LGAVG+GLAFGIASV+WL FIFNDTVIEI LT+AVSY A
Sbjct: 213 KMAMGQNSDWSSIIKFLLKVALGAVGIGLAFGIASVIWLKFIFNDTVIEITLTIAVSYFA 272
Query: 273 FFTAQEGADVSGVLTVMTLGMFYAAVARTAFKGESQQSLHYFWEMVAYIANTLIFILSGV 332
++TAQE A SGVLTVMTLGMFYAA ARTAFKG+SQ+SLH+FWEMVAYIANTLIFILSGV
Sbjct: 273 YYTAQEWAGASGVLTVMTLGMFYAAFARTAFKGDSQKSLHHFWEMVAYIANTLIFILSGV 332
Query: 333 VIAEGILGNDKIFQNHGNSWGYLILLYIFVQVSRLFVVGTLYPVLRNFGYGLEWKEAIIL 392
VIAEGIL +DKI GNSW +L LLY+++Q+SR+ VVG LYP+L FGYGL+WKE+IIL
Sbjct: 333 VIAEGILDSDKI-AYQGNSWRFLFLLYVYIQLSRVVVVGVLYPLLCRFGYGLDWKESIIL 391
Query: 393 VWSGLRGAVALSLSLSVKRSSGGSSLITSETGTLFVFFTGGIVFLTLIVNGSTTQYILHL 452
VWSGLRGAVAL+LSLSVK+SSG S I+ ETGTLF+FFTGGIVFLTLIVNGSTTQ++L L
Sbjct: 392 VWSGLRGAVALALSLSVKQSSGNSH-ISKETGTLFLFFTGGIVFLTLIVNGSTTQFVLRL 450
Query: 453 LDMDKLSATKRRILDYTKYEMLNTAFKTFGDLGDDEELGPVDWPTVKRYIRCLNDLEG-V 511
L MD L A K+RIL+YTKYEMLN A + F DLGDDEELGP DWPTV+ YI L EG +
Sbjct: 451 LRMDILPAPKKRILEYTKYEMLNKALRAFQDLGDDEELGPADWPTVESYISSLKGSEGEL 510
Query: 512 PMHPHSASETGDSLDPTNLRDIRIRLLNGVQAAYWAMLDEGRITQTAANILMQSVDEGID 571
HPH+ S+ G SLDP +L+DIR+R LNGVQA YW MLDEGRI++ ANILMQSVDE +D
Sbjct: 511 VHHPHNGSKIG-SLDPKSLKDIRMRFLNGVQATYWEMLDEGRISEVTANILMQSVDEALD 569
Query: 572 LASNELCDWRGLKDNVSFPNYYKFLQTSMFPQKLITYFTVERLEFACSICAAFLRAHKIA 631
S LCDWRGLK +V+FPNYY FL + + P+KL+TYF VERLE AC I AAFLRAH IA
Sbjct: 570 QVSTTLCDWRGLKPHVNFPNYYNFLHSKVVPRKLVTYFAVERLESACYISAAFLRAHTIA 629
Query: 632 RQQLHDFIGDSGIASVVIEESKVEGEDARKFLEDVRVNFPQVLHVVKTRQVTYSVLNHLI 691
RQQL+DF+G+S I S+VI ES+ EGE+A+KFLE VR +FPQVL VVKT+QVTYSVLNHL+
Sbjct: 630 RQQLYDFLGESNIGSIVINESEKEGEEAKKFLEKVRSSFPQVLRVVKTKQVTYSVLNHLL 689
Query: 692 DYIQNLEKVGLLEEKEMLHLHDAVQSDLKRLLRNPPLVKFPKISDLISAHPLLRELPPSV 751
YI+NLEKVGLLEEKE+ HLHDAVQ+ LK+LLRNPP+VK PK+SD+I++HPL LPP+
Sbjct: 690 GYIENLEKVGLLEEKEIAHLHDAVQTGLKKLLRNPPIVKLPKLSDMITSHPLSVALPPAF 749
Query: 752 REPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNL 811
EPL+ S KE MKL GVTLY+EGSKP+G+WLI +G+VKW SK + N HSLHP F+HGS L
Sbjct: 750 CEPLKHSKKEPMKLRGVTLYKEGSKPTGVWLIFDGIVKWKSKILSNNHSLHPTFSHGSTL 809
Query: 812 GLYEVLIGKPYMSDMVTDSVVLCFFIESDKILSILRSDPAVEDFLWQQSAIALSRILLPQ 871
GLYEVL GKPY+ D++TDS+VLCFFI+S+KILS L+SD ++DFLWQ+SA+ L ++L PQ
Sbjct: 810 GLYEVLTGKPYLCDLITDSMVLCFFIDSEKILS-LQSDSTIDDFLWQESALVLLKLLRPQ 868
Query: 872 IFEKLTMQDMRALIA-ERSKMTTCLRGEIIEIPYHCIGFLLEGFIKTHGLQEELITPPAA 930
IFE + MQ++RAL++ E SK+TT + GE IEI + IG LLEGF+K G++EELI+ PAA
Sbjct: 869 IFESVAMQELRALVSTESSKLTTYVTGESIEIDCNSIGLLLEGFVKPVGIKEELISSPAA 928
Query: 931 LIPSQGNLSFR-SAETSGNLR 950
L PS GN SF S+E SG +R
Sbjct: 929 LSPSNGNQSFHNSSEASGIMR 949
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Acts in electroneutral exchange of protons for cations such as Na(+) or Li(+) across plasma membrane. Involved in Na(+) and K(+) homeostasis. Required for cytoplasmic Na(+) and Li(+) detoxification by secreting them from the cytoplasm to the extracellular space. Regulates Na(+) content of the xylem sap. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q3YL57|NHX8_ARATH Sodium/hydrogen exchanger 8 OS=Arabidopsis thaliana GN=NHX8 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q6UJY2|SL9C1_MOUSE Sodium/hydrogen exchanger 10 OS=Mus musculus GN=Slc9c1 PE=1 SV=3 | Back alignment and function description |
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| >sp|P26434|SL9A4_RAT Sodium/hydrogen exchanger 4 OS=Rattus norvegicus GN=Slc9a4 PE=1 SV=1 | Back alignment and function description |
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| >sp|Q8BUE1|SL9A4_MOUSE Sodium/hydrogen exchanger 4 OS=Mus musculus GN=Slc9a4 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q4G0N8|SL9C1_HUMAN Sodium/hydrogen exchanger 10 OS=Homo sapiens GN=SLC9C1 PE=2 SV=2 | Back alignment and function description |
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| >sp|Q6AI14|SL9A4_HUMAN Sodium/hydrogen exchanger 4 OS=Homo sapiens GN=SLC9A4 PE=1 SV=2 | Back alignment and function description |
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| >sp|Q01345|NHEB_ONCMY Na(+)/H(+) exchanger beta OS=Oncorhynchus mykiss PE=2 SV=1 | Back alignment and function description |
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| >sp|Q61165|SL9A1_MOUSE Sodium/hydrogen exchanger 1 OS=Mus musculus GN=Slc9a1 PE=1 SV=1 | Back alignment and function description |
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| >sp|Q8RWU6|NHX6_ARATH Sodium/hydrogen exchanger 6 OS=Arabidopsis thaliana GN=NHX6 PE=1 SV=3 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 967 | ||||||
| 261873420 | 1141 | salt overly sensitive 1 [Vitis vinifera] | 0.966 | 0.819 | 0.800 | 0.0 | |
| 449464876 | 1144 | PREDICTED: sodium/hydrogen exchanger 7-l | 0.967 | 0.818 | 0.791 | 0.0 | |
| 225424514 | 1141 | PREDICTED: sodium/hydrogen exchanger 7 [ | 0.966 | 0.819 | 0.799 | 0.0 | |
| 380508732 | 1144 | plasmalemma Na+/H+ antiporter [Cucumis s | 0.967 | 0.818 | 0.790 | 0.0 | |
| 99029169 | 1145 | Na+/H+ antiporter [Populus euphratica] | 0.977 | 0.825 | 0.781 | 0.0 | |
| 224111392 | 1129 | sodium proton exchanger [Populus trichoc | 0.949 | 0.813 | 0.793 | 0.0 | |
| 255561775 | 1143 | sodium/hydrogen exchanger plant, putativ | 0.957 | 0.810 | 0.774 | 0.0 | |
| 302028367 | 1153 | SOS1 [Bruguiera gymnorhiza] | 0.968 | 0.812 | 0.772 | 0.0 | |
| 269986105 | 1153 | plasma membrane Na+/H+ antiporter [Zygop | 0.958 | 0.803 | 0.755 | 0.0 | |
| 384368002 | 1143 | uncharacterized protein LOC100789429 [Gl | 0.940 | 0.795 | 0.773 | 0.0 |
| >gi|261873420|gb|ACY03274.1| salt overly sensitive 1 [Vitis vinifera] | Back alignment and taxonomy information |
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Score = 1514 bits (3921), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 759/948 (80%), Positives = 849/948 (89%), Gaps = 13/948 (1%)
Query: 1 MESVSEGLLQLPYRTLEEEQKSGGGSSPSEGNPTDAVIFVGISLVLGIACRHLLRGTRVP 60
M SV EG+ PYR L EE S S NPTDAVIFVGI LV+GIACR LLRGTRVP
Sbjct: 1 MGSVLEGVF--PYRALGEESSS------SSSNPTDAVIFVGICLVMGIACRQLLRGTRVP 52
Query: 61 YTVALLIIGIALGSLEYGTSHQLGKIGDGIRLWASIDPDLLLAVFLPALLFESSFAMEVH 120
YTVALLI+GIALGSLE+GTS++LGKIGDGIRLWA+IDP+LLLAVFLPALLFESSF+MEVH
Sbjct: 53 YTVALLILGIALGSLEHGTSNKLGKIGDGIRLWANIDPNLLLAVFLPALLFESSFSMEVH 112
Query: 121 QIKRCLVQMILLAGPGVMISTFFLGAALKLTFPYDWSWKTSLLLGGLLSATDPVAVVALL 180
QIKRC+VQM++LAGPGV++STF LG+ALK TFPYDWSWKTSLLLGGLLSATDPVAVVALL
Sbjct: 113 QIKRCMVQMLILAGPGVLVSTFCLGSALKFTFPYDWSWKTSLLLGGLLSATDPVAVVALL 172
Query: 181 KELGASKKLNTIIEGESLMNDGTAIVVYQLFFQMVLGKSFGWGAIIKFLAQVSLGAVGMG 240
KELGA KKL+TIIEGESLMNDGTAIVVYQLF+QMVLGKSF +GA++KFL QVSLGAVG+G
Sbjct: 173 KELGAGKKLSTIIEGESLMNDGTAIVVYQLFYQMVLGKSFNFGAVVKFLTQVSLGAVGIG 232
Query: 241 LAFGIASVLWLGFIFNDTVIEIALTLAVSYIAFFTAQEGADVSGVLTVMTLGMFYAAVAR 300
LAFG+ASVLWLGFIFNDTVIEI LTLAVSYIA+FTAQEGADVSGVL VMTLGMFYAAVA+
Sbjct: 233 LAFGLASVLWLGFIFNDTVIEITLTLAVSYIAYFTAQEGADVSGVLAVMTLGMFYAAVAK 292
Query: 301 TAFKGESQQSLHYFWEMVAYIANTLIFILSGVVIAEGILGNDKIFQNHGNSWGYLILLYI 360
TAFKG QQSLH+FWEMVAYIANTLIFILSGVVIAEG+LG++ IF+NHGNSWGYLILLY+
Sbjct: 293 TAFKGGGQQSLHHFWEMVAYIANTLIFILSGVVIAEGVLGSNDIFKNHGNSWGYLILLYV 352
Query: 361 FVQVSRLFVVGTLYPVLRNFGYGLEWKEAIILVWSGLRGAVALSLSLSVKRSSGGSSLIT 420
+VQVSR+ VVG YP L FGYGL+WKEAIIL+WSGLRGAVALSLSLSVKR+S SS ++
Sbjct: 353 YVQVSRIVVVGVSYPFLWYFGYGLDWKEAIILIWSGLRGAVALSLSLSVKRASDSSSYLS 412
Query: 421 SETGTLFVFFTGGIVFLTLIVNGSTTQYILHLLDMDKLSATKRRILDYTKYEMLNTAFKT 480
SETGTLFVFFTGGIVFLTLIVNGSTTQ+ILHLL+MDKLS KRRILDYTKYEMLN A +
Sbjct: 413 SETGTLFVFFTGGIVFLTLIVNGSTTQFILHLLNMDKLSEVKRRILDYTKYEMLNKALEA 472
Query: 481 FGDLGDDEELGPVDWPTVKRYIRCLNDLEGVPMHPHSASETGDSLDPTNLRDIRIRLLNG 540
FGDLGDDEELGP DWPTVKRYI LND+EG +HPH+ E+ ++L PTNL+DIRIRLLNG
Sbjct: 473 FGDLGDDEELGPADWPTVKRYIASLNDVEGGLVHPHTVYESDNNLYPTNLKDIRIRLLNG 532
Query: 541 VQAAYWAMLDEGRITQTAANILMQSVDEGIDLASNE-LCDWRGLKDNVSFPNYYKFLQTS 599
VQAAYW MLDEGRITQT AN+LMQSVDE +DL S+E LCDW+GLK NV+FPNYY+FLQTS
Sbjct: 533 VQAAYWRMLDEGRITQTTANLLMQSVDEALDLVSDEPLCDWKGLKANVNFPNYYRFLQTS 592
Query: 600 MFPQKLITYFTVERLEFACSICAAFLRAHKIARQQLHDFIGDSGIASVVIEESKVEGEDA 659
+ PQKLITYFTVERLE AC ICAAFLRAH+IAR+QL DFIGDS IAS VI ES+ EGE+A
Sbjct: 593 ICPQKLITYFTVERLESACYICAAFLRAHRIARRQLLDFIGDSEIASTVINESEAEGEEA 652
Query: 660 RKFLEDVRVNFPQVLHVVKTRQVTYSVLNHLIDYIQNLEKVGLLEEKEMLHLHDAVQSDL 719
RKFLEDVRV FPQVL VVKTRQVT+SVL HLIDY+QNLEK+GLLEEKEM HLHDAVQ+DL
Sbjct: 653 RKFLEDVRVTFPQVLRVVKTRQVTHSVLLHLIDYVQNLEKIGLLEEKEMFHLHDAVQTDL 712
Query: 720 KRLLRNPPLVKFPKISDLISAHPLLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSG 779
K+LLRNPPLVK P++ D+I+ HPLL LP +VREPLE STKEIMK+ GV LYREGSKPSG
Sbjct: 713 KKLLRNPPLVKIPRMCDMITTHPLLGALPSAVREPLESSTKEIMKVRGVALYREGSKPSG 772
Query: 780 IWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLYEVLIGKPYMSDMVTDSVVLCFFIES 839
IWLIS+GVVKW SKSIRNKHSL P FTHGS LGLYEVLIGKPY+SDM+TDSVVLCFF+E+
Sbjct: 773 IWLISSGVVKWASKSIRNKHSLRPTFTHGSTLGLYEVLIGKPYISDMITDSVVLCFFVET 832
Query: 840 DKILSILRSDPAVEDFLWQQSAIALSRILLPQIFEKLTMQDMRALIAERSKMTTCLRGEI 899
DKI+S+LRSDPAVEDFLWQ+SAI L+++LLPQIFEK+ MQD+RAL+AE+S MT + GE
Sbjct: 833 DKIMSMLRSDPAVEDFLWQESAIVLAKLLLPQIFEKMAMQDLRALVAEKSIMTIYISGET 892
Query: 900 IEIPYHCIGFLLEGFIKTHGLQEELITPPAALIPSQGNLSFRSAETSG 947
IEIP++ IGFLL+GFIK QEELIT PAAL+PS NLSFRS +TSG
Sbjct: 893 IEIPHYSIGFLLDGFIKG---QEELITYPAALMPSH-NLSFRSLDTSG 936
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449464876|ref|XP_004150155.1| PREDICTED: sodium/hydrogen exchanger 7-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|225424514|ref|XP_002285248.1| PREDICTED: sodium/hydrogen exchanger 7 [Vitis vinifera] gi|297737560|emb|CBI26761.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|380508732|gb|AFD64618.1| plasmalemma Na+/H+ antiporter [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|99029169|gb|ABF60872.1| Na+/H+ antiporter [Populus euphratica] | Back alignment and taxonomy information |
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| >gi|224111392|ref|XP_002315837.1| sodium proton exchanger [Populus trichocarpa] gi|222864877|gb|EEF02008.1| sodium proton exchanger [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|255561775|ref|XP_002521897.1| sodium/hydrogen exchanger plant, putative [Ricinus communis] gi|223538935|gb|EEF40533.1| sodium/hydrogen exchanger plant, putative [Ricinus communis] | Back alignment and taxonomy information |
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| >gi|302028367|gb|ADK91080.1| SOS1 [Bruguiera gymnorhiza] | Back alignment and taxonomy information |
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| >gi|269986105|gb|ACZ57357.1| plasma membrane Na+/H+ antiporter [Zygophyllum xanthoxylum] | Back alignment and taxonomy information |
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| >gi|384368002|ref|NP_001244939.1| uncharacterized protein LOC100789429 [Glycine max] gi|380513814|gb|AFD64746.1| SOS1 [Glycine max] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 967 | ||||||
| TAIR|locus:2041100 | 1146 | SOS1 "SALT OVERLY SENSITIVE 1" | 0.946 | 0.798 | 0.661 | 0.0 | |
| TAIR|locus:2006762 | 756 | NHX8 "Na+/H+ exchanger 8" [Ara | 0.758 | 0.969 | 0.624 | 7.8e-245 | |
| UNIPROTKB|F1PLJ2 | 1086 | SLC9C1 "Uncharacterized protei | 0.447 | 0.398 | 0.243 | 2.7e-28 | |
| UNIPROTKB|F1M7D9 | 1177 | Slc9a10 "Protein Slc9a10" [Rat | 0.448 | 0.368 | 0.235 | 1.7e-27 | |
| MGI|MGI:2685456 | 1175 | Slc9c1 "solute carrier family | 0.448 | 0.369 | 0.232 | 5.6e-27 | |
| TIGR_CMR|CPS_3408 | 399 | CPS_3408 "Na+/H+ antiporter Nh | 0.351 | 0.852 | 0.284 | 9.8e-25 | |
| UNIPROTKB|F1MQF9 | 1137 | SLC9A10 "Uncharacterized prote | 0.596 | 0.507 | 0.204 | 5.4e-24 | |
| UNIPROTKB|F1PLH9 | 723 | SLC9C1 "Uncharacterized protei | 0.447 | 0.598 | 0.243 | 1.6e-23 | |
| UNIPROTKB|Q4G0N8 | 1177 | SLC9C1 "Sodium/hydrogen exchan | 0.525 | 0.431 | 0.202 | 3.6e-20 | |
| GENEDB_PFALCIPARUM|PF13_0019 | 1920 | PF13_0019 "sodium/hydrogen exc | 0.347 | 0.175 | 0.238 | 2.6e-19 |
| TAIR|locus:2041100 SOS1 "SALT OVERLY SENSITIVE 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3115 (1101.6 bits), Expect = 0., Sum P(2) = 0.
Identities = 610/922 (66%), Positives = 726/922 (78%)
Query: 32 NPTDAVIFVGISLVLGIACRHLLRGTRVPYTVXXXXXXXXXXSLEYGTSHQLGKIGDGIR 91
+P DAV+FVG+SLVLGIA RHLLRGTRVPYTV SLEYG H LGKIG GIR
Sbjct: 32 SPVDAVLFVGMSLVLGIASRHLLRGTRVPYTVALLVIGIALGSLEYGAKHNLGKIGHGIR 91
Query: 92 LWASIXXXXXXXXXXXXXXXESSFAMEVHQIKRCLVQMILLAGPGVMISTFFLGAALKLT 151
+W I ESSF+MEVHQIKRCL QM+LLA PGV+IST LG+ +K+T
Sbjct: 92 IWNEIDPELLLAVFLPALLFESSFSMEVHQIKRCLGQMVLLAVPGVLISTACLGSLVKVT 151
Query: 152 FPYDWSWKTXXXXXXXXXATDPVAVVALLKELGASKKLNTIIEGESLMNDGTAIVVYQLF 211
FPY+W WKT ATDPVAVVALLKELGASKKL+TIIEGESLMNDGTAIVV+QLF
Sbjct: 152 FPYEWDWKTSLLLGGLLSATDPVAVVALLKELGASKKLSTIIEGESLMNDGTAIVVFQLF 211
Query: 212 FQMVLGKSFGWGAIIKFLAQVSLGAVGMGLAFGIASVLWLGFIFNDTVIEIALTLAVSYI 271
+M +G++ W +IIKFL +V+LGAVG+GLAFGIASV+WL FIFNDTVIEI LT+AVSY
Sbjct: 212 LKMAMGQNSDWSSIIKFLLKVALGAVGIGLAFGIASVIWLKFIFNDTVIEITLTIAVSYF 271
Query: 272 AFFTAQEGADVSGVLTVMTLGMFYAAVARTAFKGESQQSLHYFWEMVAYIANTLIFILSG 331
A++TAQE A SGVLTVMTLGMFYAA ARTAFKG+SQ+SLH+FWEMVAYIANTLIFILSG
Sbjct: 272 AYYTAQEWAGASGVLTVMTLGMFYAAFARTAFKGDSQKSLHHFWEMVAYIANTLIFILSG 331
Query: 332 VVIAEGILGNDKIFQNHGNSWGYLILLYIFVQVSRLFVVGTLYPVLRNFGYGLEWKEAII 391
VVIAEGIL +DKI GNSW +L LLY+++Q+SR+ VVG LYP+L FGYGL+WKE+II
Sbjct: 332 VVIAEGILDSDKIAYQ-GNSWRFLFLLYVYIQLSRVVVVGVLYPLLCRFGYGLDWKESII 390
Query: 392 LVWXXXXXXXXXXXXXXXXXXXXXXXXITSETGTLFVFFTGGIVFLTLIVNGSTTQYILH 451
LVW I+ ETGTLF+FFTGGIVFLTLIVNGSTTQ++L
Sbjct: 391 LVWSGLRGAVALALSLSVKQSSGNSH-ISKETGTLFLFFTGGIVFLTLIVNGSTTQFVLR 449
Query: 452 LLDMDKLSATKRRILDYTKYEMLNTAFKTFGDLGDDEELGPVDWPTVKRYIRCLNDLEG- 510
LL MD L A K+RIL+YTKYEMLN A + F DLGDDEELGP DWPTV+ YI L EG
Sbjct: 450 LLRMDILPAPKKRILEYTKYEMLNKALRAFQDLGDDEELGPADWPTVESYISSLKGSEGE 509
Query: 511 VPMHPHSASETGDSLDPTNLRDIRIRLLNGVQAAYWAMLDEGRITQTAANILMQSVDEGI 570
+ HPH+ S+ G SLDP +L+DIR+R LNGVQA YW MLDEGRI++ ANILMQSVDE +
Sbjct: 510 LVHHPHNGSKIG-SLDPKSLKDIRMRFLNGVQATYWEMLDEGRISEVTANILMQSVDEAL 568
Query: 571 DLASNELCDWRGLKDNVSFPNYYKFLQTSMFPQKLITYFTVERLEFACSICAAFLRAHKI 630
D S LCDWRGLK +V+FPNYY FL + + P+KL+TYF VERLE AC I AAFLRAH I
Sbjct: 569 DQVSTTLCDWRGLKPHVNFPNYYNFLHSKVVPRKLVTYFAVERLESACYISAAFLRAHTI 628
Query: 631 ARQQLHDFIGDSGIASVVIEESKVEGEDARKFLEDVRVNFPQVLHVVKTRQVTYSVLNHL 690
ARQQL+DF+G+S I S+VI ES+ EGE+A+KFLE VR +FPQVL VVKT+QVTYSVLNHL
Sbjct: 629 ARQQLYDFLGESNIGSIVINESEKEGEEAKKFLEKVRSSFPQVLRVVKTKQVTYSVLNHL 688
Query: 691 IDYIQNLEKVGLLEEKEMLHLHDAVQSDLKRLLRNPPLVKFPKISDLISAHPLLRELPPS 750
+ YI+NLEKVGLLEEKE+ HLHDAVQ+ LK+LLRNPP+VK PK+SD+I++HPL LPP+
Sbjct: 689 LGYIENLEKVGLLEEKEIAHLHDAVQTGLKKLLRNPPIVKLPKLSDMITSHPLSVALPPA 748
Query: 751 VREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSN 810
EPL+ S KE MKL GVTLY+EGSKP+G+WLI +G+VKW SK + N HSLHP F+HGS
Sbjct: 749 FCEPLKHSKKEPMKLRGVTLYKEGSKPTGVWLIFDGIVKWKSKILSNNHSLHPTFSHGST 808
Query: 811 LGLYEVLIGKPYMSDMVTDSVVLCFFIESDKILSILRSDPAVEDFLWQQSAIALSRILLP 870
LGLYEVL GKPY+ D++TDS+VLCFFI+S+KILS L+SD ++DFLWQ+SA+ L ++L P
Sbjct: 809 LGLYEVLTGKPYLCDLITDSMVLCFFIDSEKILS-LQSDSTIDDFLWQESALVLLKLLRP 867
Query: 871 QIFEKLTMQDMRALIA-ERSKMTTCLRGEIIEIPYHCIGFLLEGFIKTHGLQEELITPPA 929
QIFE + MQ++RAL++ E SK+TT + GE IEI + IG LLEGF+K G++EELI+ PA
Sbjct: 868 QIFESVAMQELRALVSTESSKLTTYVTGESIEIDCNSIGLLLEGFVKPVGIKEELISSPA 927
Query: 930 ALIPSQGNLSFR-SAETSGNLR 950
AL PS GN SF S+E SG +R
Sbjct: 928 ALSPSNGNQSFHNSSEASGIMR 949
|
|
| TAIR|locus:2006762 NHX8 "Na+/H+ exchanger 8" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F1PLJ2 SLC9C1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F1M7D9 Slc9a10 "Protein Slc9a10" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
| MGI|MGI:2685456 Slc9c1 "solute carrier family 9, subfamily C (Na+-transporting carboxylic acid decarboxylase), member 1" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
| TIGR_CMR|CPS_3408 CPS_3408 "Na+/H+ antiporter NhaP" [Colwellia psychrerythraea 34H (taxid:167879)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F1MQF9 SLC9A10 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F1PLH9 SLC9C1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q4G0N8 SLC9C1 "Sodium/hydrogen exchanger 10" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
| GENEDB_PFALCIPARUM|PF13_0019 PF13_0019 "sodium/hydrogen exchanger, Na+, H+ antiporter" [Plasmodium falciparum (taxid:5833)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9LKW9 | NHX7_ARATH | No assigned EC number | 0.7176 | 0.9451 | 0.7975 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
 |
 |
 |
 |
 |
 |
 |
 |
 |
 | gw1.X.6267.1 | sodium proton exchanger (1129 aa) | ||||||
(Populus trichocarpa) | ||||||||
| Sorry, there are no predicted associations at the current settings. |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 967 | |||
| COG0025 | 429 | COG0025, NhaP, NhaP-type Na+/H+ and K+/H+ antiport | 1e-57 | |
| pfam00999 | 370 | pfam00999, Na_H_Exchanger, Sodium/hydrogen exchang | 2e-48 | |
| TIGR00840 | 559 | TIGR00840, b_cpa1, sodium/hydrogen exchanger 3 | 2e-42 | |
| TIGR00831 | 525 | TIGR00831, a_cpa1, Na+/H+ antiporter, bacterial fo | 7e-38 | |
| COG3263 | 574 | COG3263, COG3263, NhaP-type Na+/H+ and K+/H+ antip | 2e-19 | |
| PRK05326 | 562 | PRK05326, PRK05326, potassium/proton antiporter; R | 1e-15 | |
| COG0475 | 397 | COG0475, KefB, Kef-type K+ transport systems, memb | 7e-08 | |
| pfam00027 | 91 | pfam00027, cNMP_binding, Cyclic nucleotide-binding | 2e-06 | |
| COG0664 | 214 | COG0664, Crp, cAMP-binding proteins - catabolite g | 2e-04 | |
| cd00038 | 115 | cd00038, CAP_ED, effector domain of the CAP family | 0.002 |
| >gnl|CDD|223104 COG0025, NhaP, NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 204 bits (521), Expect = 1e-57
Identities = 115/439 (26%), Positives = 201/439 (45%), Gaps = 33/439 (7%)
Query: 36 AVIFVGISLVLGIACRHLLRGTRVPYTVALLIIGIALGSLEYGTSHQLGKIGDGIRLWAS 95
+ + + L+LG+ L +P LL++G+ G G L
Sbjct: 7 LLFLLLLILLLGLLVSVLAGRLLLPEIPLLLLLGLLGGPP--------GLNLISPDLE-- 56
Query: 96 IDPDLLLAVFLPALLFESSFAMEVHQIKRCLVQMILLAGPGVMISTFFLGAALKLTFPYD 155
+DP+L L +FL LLF +++ +++R +++LA P V+I+ +G P
Sbjct: 57 LDPELFLVLFLAILLFAGGLELDLRELRRVWRSILVLALPLVLITALGIGLLAHWLLP-G 115
Query: 156 WSWKTSLLLGGLLSATDPVAVVALLKELGASKKLNTIIEGESLMNDGTAIVVYQLFFQMV 215
+ LLG +LS TDPVAV + K + K++ TI+EGESL+NDG IV++++ +
Sbjct: 116 IPLAAAFLLGAILSPTDPVAVSPIFKRVRVPKRIRTILEGESLLNDGVGIVLFKVALAAL 175
Query: 216 LGKS-FGWGAIIKFLAQVSLGAVGMGLAFGIASVLWLGFI----FNDTVIEIALTLAVSY 270
LG F G + +LG + +GL G L + + ++E LTL +++
Sbjct: 176 LGTGAFSLGWALLLFLIEALGGILLGLLLGYLLGRLLRRLDRRGWTSPLLETLLTLLLAF 235
Query: 271 IAFFTAQEGADVSGVLTVMTLGMFYAAVARTAFKGES-QQSLHYFWEMVAYIANTLIFIL 329
A+ A+ VSG+L V+ G+ R S + L FWE++ ++ N L+F+L
Sbjct: 236 AAYLLAEAL-GVSGILAVVVAGLVLGEAVRINLSPASARLRLSSFWEVLDFLLNGLLFVL 294
Query: 330 SGVVIAEGILGNDKIFQNHGNSWGYLILLYIFVQVSRLF-VVGTLYPVLRNFGYGLEWKE 388
G + +L L++ + V ++R V +L L W+E
Sbjct: 295 LGAQLPLSLL--------LALGLLGLLVALVAVLLARPLWVFLSLKGSNLKLRDPLPWRE 346
Query: 389 AIILVWSGLRGAVALSLSLSVKRSSGGSSLITSETGTLFVFFTGGIVFLTLIVNGSTTQY 448
+ L W+G RG V+L+L+L + + L +F ++ +L+V G T
Sbjct: 347 RLFLSWAGPRGVVSLALALLIP------LELPGPARELILFIVFLVILFSLLVQGLTLPP 400
Query: 449 ILHLLDMDKLSATKRRILD 467
+ L++ + SA + IL
Sbjct: 401 LAKKLEVSEESALAKEILG 419
|
Length = 429 |
| >gnl|CDD|216235 pfam00999, Na_H_Exchanger, Sodium/hydrogen exchanger family | Back alignment and domain information |
|---|
| >gnl|CDD|233147 TIGR00840, b_cpa1, sodium/hydrogen exchanger 3 | Back alignment and domain information |
|---|
| >gnl|CDD|129911 TIGR00831, a_cpa1, Na+/H+ antiporter, bacterial form | Back alignment and domain information |
|---|
| >gnl|CDD|225802 COG3263, COG3263, NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >gnl|CDD|235410 PRK05326, PRK05326, potassium/proton antiporter; Reviewed | Back alignment and domain information |
|---|
| >gnl|CDD|223551 COG0475, KefB, Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >gnl|CDD|215664 pfam00027, cNMP_binding, Cyclic nucleotide-binding domain | Back alignment and domain information |
|---|
| >gnl|CDD|223736 COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >gnl|CDD|237999 cd00038, CAP_ED, effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 967 | |||
| TIGR00831 | 525 | a_cpa1 Na+/H+ antiporter, bacterial form. This mod | 100.0 | |
| TIGR00840 | 559 | b_cpa1 sodium/hydrogen exchanger 3. This model is | 100.0 | |
| KOG1965 | 575 | consensus Sodium/hydrogen exchanger protein [Inorg | 100.0 | |
| COG0025 | 429 | NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorg | 100.0 | |
| KOG1966 | 670 | consensus Sodium/hydrogen exchanger protein [Inorg | 100.0 | |
| PRK05326 | 562 | potassium/proton antiporter; Reviewed | 100.0 | |
| TIGR00844 | 810 | c_cpa1 na(+)/h(+) antiporter. This model is specif | 100.0 | |
| COG3263 | 574 | NhaP-type Na+/H+ and K+/H+ antiporters with a uniq | 100.0 | |
| PF00999 | 380 | Na_H_Exchanger: Sodium/hydrogen exchanger family; | 100.0 | |
| PLN03159 | 832 | cation/H(+) antiporter 15; Provisional | 99.97 | |
| PRK03562 | 621 | glutathione-regulated potassium-efflux system prot | 99.97 | |
| PRK03659 | 601 | glutathione-regulated potassium-efflux system prot | 99.97 | |
| PRK10669 | 558 | putative cation:proton antiport protein; Provision | 99.96 | |
| COG0475 | 397 | KefB Kef-type K+ transport systems, membrane compo | 99.96 | |
| TIGR00932 | 273 | 2a37 transporter, monovalent cation:proton antipor | 99.96 | |
| KOG4505 | 467 | consensus Na+/H+ antiporter [Inorganic ion transpo | 99.95 | |
| KOG0498 | 727 | consensus K+-channel ERG and related proteins, con | 99.86 | |
| COG4651 | 408 | RosB Kef-type K+ transport system, predicted NAD-b | 99.86 | |
| KOG1650 | 769 | consensus Predicted K+/H+-antiporter [Inorganic io | 99.82 | |
| PRK09392 | 236 | ftrB transcriptional activator FtrB; Provisional | 99.79 | |
| KOG0500 | 536 | consensus Cyclic nucleotide-gated cation channel C | 99.79 | |
| KOG0499 | 815 | consensus Cyclic nucleotide-gated cation channel C | 99.78 | |
| PLN03192 | 823 | Voltage-dependent potassium channel; Provisional | 99.78 | |
| PRK11753 | 211 | DNA-binding transcriptional dual regulator Crp; Pr | 99.75 | |
| PRK11161 | 235 | fumarate/nitrate reduction transcriptional regulat | 99.71 | |
| KOG0614 | 732 | consensus cGMP-dependent protein kinase [Signal tr | 99.7 | |
| PRK10402 | 226 | DNA-binding transcriptional activator YeiL; Provis | 99.69 | |
| KOG1113 | 368 | consensus cAMP-dependent protein kinase types I an | 99.69 | |
| TIGR03697 | 193 | NtcA_cyano global nitrogen regulator NtcA, cyanoba | 99.67 | |
| COG0664 | 214 | Crp cAMP-binding proteins - catabolite gene activa | 99.66 | |
| PRK09391 | 230 | fixK transcriptional regulator FixK; Provisional | 99.62 | |
| PRK13918 | 202 | CRP/FNR family transcriptional regulator; Provisio | 99.61 | |
| cd00038 | 115 | CAP_ED effector domain of the CAP family of transc | 99.57 | |
| PF00027 | 91 | cNMP_binding: Cyclic nucleotide-binding domain; In | 99.5 | |
| smart00100 | 120 | cNMP Cyclic nucleotide-monophosphate binding domai | 99.45 | |
| COG2905 | 610 | Predicted signal-transduction protein containing c | 99.4 | |
| KOG0614 | 732 | consensus cGMP-dependent protein kinase [Signal tr | 99.37 | |
| PLN02868 | 413 | acyl-CoA thioesterase family protein | 99.33 | |
| PRK14853 | 423 | nhaA pH-dependent sodium/proton antiporter; Provis | 99.13 | |
| KOG0501 | 971 | consensus K+-channel KCNQ [Inorganic ion transport | 99.13 | |
| KOG1113 | 368 | consensus cAMP-dependent protein kinase types I an | 98.97 | |
| KOG2968 | 1158 | consensus Predicted esterase of the alpha-beta hyd | 98.61 | |
| TIGR00773 | 373 | NhaA Na+/H+ antiporter NhaA. These proteins are me | 98.5 | |
| COG0786 | 404 | GltS Na+/glutamate symporter [Amino acid transport | 97.98 | |
| KOG2968 | 1158 | consensus Predicted esterase of the alpha-beta hyd | 97.96 | |
| PRK14856 | 438 | nhaA pH-dependent sodium/proton antiporter; Provis | 97.82 | |
| PF03616 | 368 | Glt_symporter: Sodium/glutamate symporter; InterPr | 97.7 | |
| PRK09560 | 389 | nhaA pH-dependent sodium/proton antiporter; Review | 97.69 | |
| PRK14855 | 423 | nhaA pH-dependent sodium/proton antiporter; Provis | 97.69 | |
| PRK09561 | 388 | nhaA pH-dependent sodium/proton antiporter; Review | 97.62 | |
| PF06965 | 378 | Na_H_antiport_1: Na+/H+ antiporter 1; InterPro: IP | 97.57 | |
| PRK14854 | 383 | nhaA pH-dependent sodium/proton antiporter; Provis | 97.54 | |
| PF03601 | 305 | Cons_hypoth698: Conserved hypothetical protein 698 | 97.48 | |
| COG3004 | 390 | NhaA Na+/H+ antiporter [Inorganic ion transport an | 97.46 | |
| PRK11832 | 207 | putative DNA-binding transcriptional regulator; Pr | 97.44 | |
| PF04831 | 153 | Popeye: Popeye protein conserved region; InterPro: | 97.38 | |
| TIGR00698 | 335 | conserved hypothetical integral membrane protein. | 96.72 | |
| PRK03562 | 621 | glutathione-regulated potassium-efflux system prot | 96.66 | |
| PRK03659 | 601 | glutathione-regulated potassium-efflux system prot | 96.59 | |
| KOG3542 | 1283 | consensus cAMP-regulated guanine nucleotide exchan | 96.5 | |
| TIGR00210 | 398 | gltS sodium--glutamate symport carrier (gltS). | 95.87 | |
| COG2855 | 334 | Predicted membrane protein [Function unknown] | 95.76 | |
| PRK10669 | 558 | putative cation:proton antiport protein; Provision | 95.63 | |
| PLN03159 | 832 | cation/H(+) antiporter 15; Provisional | 95.44 | |
| TIGR03802 | 562 | Asp_Ala_antiprt aspartate-alanine antiporter. All | 95.06 | |
| COG0475 | 397 | KefB Kef-type K+ transport systems, membrane compo | 94.53 | |
| PRK03818 | 552 | putative transporter; Validated | 94.43 | |
| PF06826 | 169 | Asp-Al_Ex: Predicted Permease Membrane Region; Int | 94.39 | |
| PRK04972 | 558 | putative transporter; Provisional | 94.31 | |
| PF05684 | 378 | DUF819: Protein of unknown function (DUF819); Inte | 93.96 | |
| PF13593 | 313 | DUF4137: SBF-like CPA transporter family (DUF4137) | 93.5 | |
| TIGR03082 | 156 | Gneg_AbrB_dup membrane protein AbrB duplication. T | 92.88 | |
| COG0679 | 311 | Predicted permeases [General function prediction o | 92.52 | |
| COG0385 | 319 | Predicted Na+-dependent transporter [General funct | 91.82 | |
| PF03956 | 191 | DUF340: Membrane protein of unknown function (DUF3 | 91.08 | |
| PF01758 | 187 | SBF: Sodium Bile acid symporter family; InterPro: | 91.0 | |
| KOG3542 | 1283 | consensus cAMP-regulated guanine nucleotide exchan | 90.93 | |
| PF03601 | 305 | Cons_hypoth698: Conserved hypothetical protein 698 | 90.39 | |
| PRK12460 | 312 | 2-keto-3-deoxygluconate permease; Provisional | 88.45 | |
| TIGR00210 | 398 | gltS sodium--glutamate symport carrier (gltS). | 88.38 | |
| PF03390 | 414 | 2HCT: 2-hydroxycarboxylate transporter family; Int | 88.11 | |
| TIGR00832 | 328 | acr3 arsenical-resistance protein. The first prote | 87.97 | |
| TIGR00783 | 347 | ccs citrate carrier protein, CCS family. These pro | 87.81 | |
| PRK05326 | 562 | potassium/proton antiporter; Reviewed | 87.21 | |
| COG3493 | 438 | CitS Na+/citrate symporter [Energy production and | 86.82 | |
| COG0798 | 342 | ACR3 Arsenite efflux pump ACR3 and related permeas | 85.59 | |
| TIGR00698 | 335 | conserved hypothetical integral membrane protein. | 85.5 | |
| TIGR00946 | 321 | 2a69 he Auxin Efflux Carrier (AEC) Family. | 85.45 | |
| COG2431 | 297 | Predicted membrane protein [Function unknown] | 84.89 | |
| PF03616 | 368 | Glt_symporter: Sodium/glutamate symporter; InterPr | 84.49 | |
| TIGR00808 | 254 | malonate_madM malonate transporter, MadM subunit. | 84.34 | |
| PF05145 | 318 | AmoA: Putative ammonia monooxygenase; InterPro: IP | 84.32 | |
| COG2985 | 544 | Predicted permease [General function prediction on | 84.09 | |
| TIGR00844 | 810 | c_cpa1 na(+)/h(+) antiporter. This model is specif | 83.95 | |
| PRK04972 | 558 | putative transporter; Provisional | 83.82 | |
| COG3180 | 352 | AbrB Putative ammonia monooxygenase [General funct | 83.18 | |
| PRK12460 | 312 | 2-keto-3-deoxygluconate permease; Provisional | 82.66 | |
| COG2855 | 334 | Predicted membrane protein [Function unknown] | 82.02 | |
| COG1346 | 230 | LrgB Putative effector of murein hydrolase [Cell e | 81.89 |
| >TIGR00831 a_cpa1 Na+/H+ antiporter, bacterial form | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-61 Score=564.72 Aligned_cols=503 Identities=24% Similarity=0.355 Sum_probs=393.7
Q ss_pred HHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhhhccccccccccccccccccccChhHHHHHHhHHHhhhhhhcCCHHHH
Q 002099 43 SLVLGIACRHLLRGTRVPYTVALLIIGIALGSLEYGTSHQLGKIGDGIRLWASIDPDLLLAVFLPALLFESSFAMEVHQI 122 (967)
Q Consensus 43 ~l~~~~~~~~l~~r~~lP~~v~lil~Gi~lG~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~llF~~g~~~~~~~l 122 (967)
+++.+.....+++|+++|++++++++|+++|+.+.+. ..+++|+.++.+++|+++|.+|+++|++.+
T Consensus 6 l~~~~~~~~~l~~r~~lP~~v~lil~Gi~lg~~~~~~-------------~~~~~~~~~~~~~Lp~lLF~~g~~~~~~~l 72 (525)
T TIGR00831 6 LVMLATAVAVTVKFIRLPYPIALILAGLLLGLAGLLP-------------EVPLDREIVLFLFLPPLLFEAAMNTDLREL 72 (525)
T ss_pred HHHHHHHHHHHhcccCCCHHHHHHHHHHHHHhccccC-------------CCCCCHHHHHHHHHHHHHHHHHhcCCHHHH
Confidence 3444555567889999999999999999999865321 035789999999999999999999999999
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHhhcccccccHHHHHHHHhhcCCCcchhhhhhhhhhHHHH
Q 002099 123 KRCLVQMILLAGPGVMISTFFLGAALKLTFPYDWSWKTSLLLGGLLSATDPVAVVALLKELGASKKLNTIIEGESLMNDG 202 (967)
Q Consensus 123 ~~~~~~i~~la~~gv~i~~~~~~~~~~~~~~~~~~~~~alllgails~Tdp~av~~il~~l~~~~~l~~li~gesl~nD~ 202 (967)
|+++++++.+|+++++++++++|+.++++ + ++||..|+++|+++|||||+++.+++++.++|+++.++++|||++||+
T Consensus 73 ~~~~~~i~~la~~~vlit~~~v~~~~~~~-~-~l~~~~alllGails~TDpvav~~il~~~~~p~rl~~il~gESllND~ 150 (525)
T TIGR00831 73 RENFRPIALIAFLLVVVTTVVVGFSLNWI-L-GIPLALALILGAVLSPTDAVAVLGTFKSIRAPKKLSILLEGESLLNDG 150 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-h-cccHHHHHHHHHHhCCCCHHHHHHHHhcCCCCHHHHHHHhhhhhhcch
Confidence 99999999999999999999999999884 3 899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcc-CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHHHHhhCC
Q 002099 203 TAIVVYQLFFQMVLG-KSFGWGAIIKFLAQVSLGAVGMGLAFGIASVLWLGFIFNDTVIEIALTLAVSYIAFFTAQEGAD 281 (967)
Q Consensus 203 ~aivlf~~~~~~~~~-~~~~~~~~~~~~~~~~~g~i~~G~~~g~~~~~~l~~~~~~~~~~~~l~l~~~~~~~~~a~e~lg 281 (967)
+++++|.++.++..+ +..++......+...++||+++|+++|++..+++++..+++..++.++++++|++|++| |.+|
T Consensus 151 ~alvlf~~~~~~~~~~~~~~~~~~~~~f~~~~~~gi~vG~~~g~~~~~l~~~~~~~~~~~~~l~l~~~~~~y~lA-e~lg 229 (525)
T TIGR00831 151 AALVVFAIAVAVALGKGVFDPLNAALDFAVVCVGGIAAGLAVGYLAYRLLRAKIDDPLVEIALTILAPFAGFLLA-ERFH 229 (525)
T ss_pred HHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHH-HHhC
Confidence 999999999988764 55666655555556678889999999999888887767777889999999999999999 7899
Q ss_pred CcchHHHHHHHHHHhhhhcc-cCChhHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhcccccccccCc--chHH---HH
Q 002099 282 VSGVLTVMTLGMFYAAVART-AFKGESQQSLHYFWEMVAYIANTLIFILSGVVIAEGILGNDKIFQNHG--NSWG---YL 355 (967)
Q Consensus 282 ~Sgila~~~aGl~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~Fv~~G~~i~~~~l~~~~~~~~~~--~~~~---~~ 355 (967)
.||++|+|++|++++++++. +.+++.+...+.||+.+++++|+++|+++|++++.............. ..+. ..
T Consensus 230 ~SgilAvv~aGl~l~~~~~~~~~~~~~~~~~~~fw~~l~~ll~~~iFvllGl~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (525)
T TIGR00831 230 FSGVIAVVAAGLILTNYGRDFSMSPTTRLIALDFWSVIVFLVNGIIFILIGVQTPGTIFSAWKEILVAPAAVILALFTNA 309 (525)
T ss_pred CCHHHHHHHHHHHHccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHH
Confidence 99999999999999997766 678888899999999999999999999999999763321100000000 0111 13
Q ss_pred HHHHHHHHHHHHHHHHHH--HHHHHhhCCCCChhhHHHHhhccchhhHHHHHhhhhcccC-CCCcccccccccchhhhhh
Q 002099 356 ILLYIFVQVSRLFVVGTL--YPVLRNFGYGLEWKEAIILVWSGLRGAVALSLSLSVKRSS-GGSSLITSETGTLFVFFTG 432 (967)
Q Consensus 356 ~~~~~~~~v~R~l~v~~~--~~~l~~~~~~~~~~~~~~l~~~g~RG~v~lalal~v~~~~-~~~~~~~~~~~~~i~~~~~ 432 (967)
++++..+...|+++++.. .++.++.+.+++||++++++|+|+||++++++|+++|... ++.+++ .++.+++.++
T Consensus 310 ~~i~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~r~~~v~~w~G~RG~vslA~al~~p~~~~~g~~~p---~r~~i~~~~~ 386 (525)
T TIGR00831 310 FVIYPVMTYVRFLWTMKPFSNRFLKKKPMEFGTRWKHVVSWAGLRGAIPLALALSFPNQLLSGMAFP---ARYELVFLAA 386 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccCCCChhhHHHheeccchHHHHHHHHHHccccccCCCCCc---hHHHHHHHHH
Confidence 344555666787665331 1222333456789999999999999999999999999763 333432 3688999999
Q ss_pred hhhhhhhhccccchHHHHhhcCCCCCcHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCChHHH-HHHHHHhhhhcCC
Q 002099 433 GIVFLTLIVNGSTTQYILHLLDMDKLSATKRRILDYTKYEMLNTAFKTFGDLGDDEELGPVDWPTV-KRYIRCLNDLEGV 511 (967)
Q Consensus 433 ~vvl~Tl~i~g~t~~~l~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v-~~~~~~l~~~~~~ 511 (967)
++|++|+++||+|+|+++|++++++.++. +.....++..+.+++.+.++++..++...++..+.+ ++|..++++.+.+
T Consensus 387 ~vVl~TllvqG~tlp~l~r~l~~~~~~~~-~~e~~~a~~~~~~aa~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 465 (525)
T TIGR00831 387 GVILFSLLVQGISLPIFVKRKFVSEHSER-ELEEIIARYIAARSAKFALMKAVEQLRIVEPVARELLPELDARIEELRAD 465 (525)
T ss_pred HHHHHHHHHHHhhHHHHHHhcCCCCCChh-hHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999877643 334455677788888888888766554433223333 3455554443221
Q ss_pred CCCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh
Q 002099 512 PMHPHSASETGDSLDPTNLRDIRIRLLNGVQAAYWAMLDEGRITQTAANILMQSVDEG 569 (967)
Q Consensus 512 ~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~g~i~~~~~~~l~~~~~~~ 569 (967)
.. ... + +...+.+..+++|++++++||+.+.+++++|+||+++++.+++.+|..
T Consensus 466 ~~-~~~--~-~~~~~~~~~~~~~~~~l~~er~~l~~~~~~~~i~~~~~~~~~~~ld~~ 519 (525)
T TIGR00831 466 GE-EKI--R-SGMGEKNLRRRARLYVLDAKRSAVVDLRAGGLISQEVLLELMRELDLK 519 (525)
T ss_pred cc-cch--h-hhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhhHH
Confidence 11 000 0 000111224578899999999999999999999999999999888753
|
This model is specific for the bacterial members of this family. |
| >TIGR00840 b_cpa1 sodium/hydrogen exchanger 3 | Back alignment and domain information |
|---|
| >KOG1965 consensus Sodium/hydrogen exchanger protein [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >COG0025 NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >KOG1966 consensus Sodium/hydrogen exchanger protein [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >PRK05326 potassium/proton antiporter; Reviewed | Back alignment and domain information |
|---|
| >TIGR00844 c_cpa1 na(+)/h(+) antiporter | Back alignment and domain information |
|---|
| >COG3263 NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >PF00999 Na_H_Exchanger: Sodium/hydrogen exchanger family; InterPro: IPR006153 Sodium proton exchangers (NHEs) constitute a large family of integral membrane protein transporters that are responsible for the counter-transport of protons and sodium ions across lipid bilayers [, ] | Back alignment and domain information |
|---|
| >PLN03159 cation/H(+) antiporter 15; Provisional | Back alignment and domain information |
|---|
| >PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional | Back alignment and domain information |
|---|
| >PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional | Back alignment and domain information |
|---|
| >PRK10669 putative cation:proton antiport protein; Provisional | Back alignment and domain information |
|---|
| >COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >TIGR00932 2a37 transporter, monovalent cation:proton antiporter-2 (CPA2) family | Back alignment and domain information |
|---|
| >KOG4505 consensus Na+/H+ antiporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >COG4651 RosB Kef-type K+ transport system, predicted NAD-binding component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >KOG1650 consensus Predicted K+/H+-antiporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >PRK09392 ftrB transcriptional activator FtrB; Provisional | Back alignment and domain information |
|---|
| >KOG0500 consensus Cyclic nucleotide-gated cation channel CNGA1-3 and related proteins [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG0499 consensus Cyclic nucleotide-gated cation channel CNCG4 [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PLN03192 Voltage-dependent potassium channel; Provisional | Back alignment and domain information |
|---|
| >PRK11753 DNA-binding transcriptional dual regulator Crp; Provisional | Back alignment and domain information |
|---|
| >PRK11161 fumarate/nitrate reduction transcriptional regulator; Provisional | Back alignment and domain information |
|---|
| >KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PRK10402 DNA-binding transcriptional activator YeiL; Provisional | Back alignment and domain information |
|---|
| >KOG1113 consensus cAMP-dependent protein kinase types I and II, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >TIGR03697 NtcA_cyano global nitrogen regulator NtcA, cyanobacterial | Back alignment and domain information |
|---|
| >COG0664 Crp cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PRK09391 fixK transcriptional regulator FixK; Provisional | Back alignment and domain information |
|---|
| >PRK13918 CRP/FNR family transcriptional regulator; Provisional | Back alignment and domain information |
|---|
| >cd00038 CAP_ED effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor | Back alignment and domain information |
|---|
| >PF00027 cNMP_binding: Cyclic nucleotide-binding domain; InterPro: IPR000595 Proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues [, , ] | Back alignment and domain information |
|---|
| >smart00100 cNMP Cyclic nucleotide-monophosphate binding domain | Back alignment and domain information |
|---|
| >COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PLN02868 acyl-CoA thioesterase family protein | Back alignment and domain information |
|---|
| >PRK14853 nhaA pH-dependent sodium/proton antiporter; Provisional | Back alignment and domain information |
|---|
| >KOG0501 consensus K+-channel KCNQ [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >KOG1113 consensus cAMP-dependent protein kinase types I and II, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG2968 consensus Predicted esterase of the alpha-beta hydrolase superfamily (Neuropathy target esterase), contains cAMP-binding domains [General function prediction only] | Back alignment and domain information |
|---|
| >TIGR00773 NhaA Na+/H+ antiporter NhaA | Back alignment and domain information |
|---|
| >COG0786 GltS Na+/glutamate symporter [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
| >KOG2968 consensus Predicted esterase of the alpha-beta hydrolase superfamily (Neuropathy target esterase), contains cAMP-binding domains [General function prediction only] | Back alignment and domain information |
|---|
| >PRK14856 nhaA pH-dependent sodium/proton antiporter; Provisional | Back alignment and domain information |
|---|
| >PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate | Back alignment and domain information |
|---|
| >PRK09560 nhaA pH-dependent sodium/proton antiporter; Reviewed | Back alignment and domain information |
|---|
| >PRK14855 nhaA pH-dependent sodium/proton antiporter; Provisional | Back alignment and domain information |
|---|
| >PRK09561 nhaA pH-dependent sodium/proton antiporter; Reviewed | Back alignment and domain information |
|---|
| >PF06965 Na_H_antiport_1: Na+/H+ antiporter 1; InterPro: IPR004670 NhaA is a sodium ion/proton antiporter that uses the proton electrochemical gradient to expel sodium ions from the cytoplasm and functions primarily in the adaptation to high salinity at alkaline pH | Back alignment and domain information |
|---|
| >PRK14854 nhaA pH-dependent sodium/proton antiporter; Provisional | Back alignment and domain information |
|---|
| >PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins | Back alignment and domain information |
|---|
| >COG3004 NhaA Na+/H+ antiporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >PRK11832 putative DNA-binding transcriptional regulator; Provisional | Back alignment and domain information |
|---|
| >PF04831 Popeye: Popeye protein conserved region; InterPro: IPR006916 The Popeye (POP) family of proteins, is restricted to vertebrates and is preferentially expressed in developing and adult striated muscle | Back alignment and domain information |
|---|
| >TIGR00698 conserved hypothetical integral membrane protein | Back alignment and domain information |
|---|
| >PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional | Back alignment and domain information |
|---|
| >PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional | Back alignment and domain information |
|---|
| >KOG3542 consensus cAMP-regulated guanine nucleotide exchange factor [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >TIGR00210 gltS sodium--glutamate symport carrier (gltS) | Back alignment and domain information |
|---|
| >COG2855 Predicted membrane protein [Function unknown] | Back alignment and domain information |
|---|
| >PRK10669 putative cation:proton antiport protein; Provisional | Back alignment and domain information |
|---|
| >PLN03159 cation/H(+) antiporter 15; Provisional | Back alignment and domain information |
|---|
| >TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter | Back alignment and domain information |
|---|
| >COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >PRK03818 putative transporter; Validated | Back alignment and domain information |
|---|
| >PF06826 Asp-Al_Ex: Predicted Permease Membrane Region; InterPro: IPR006512 These sequences contain a domain that is duplicated in HI0035 of Haemophilus influenzae, in YidE and YbjL of Escherichia coli, and in a number of other putative transporters | Back alignment and domain information |
|---|
| >PRK04972 putative transporter; Provisional | Back alignment and domain information |
|---|
| >PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species | Back alignment and domain information |
|---|
| >PF13593 DUF4137: SBF-like CPA transporter family (DUF4137) | Back alignment and domain information |
|---|
| >TIGR03082 Gneg_AbrB_dup membrane protein AbrB duplication | Back alignment and domain information |
|---|
| >COG0679 Predicted permeases [General function prediction only] | Back alignment and domain information |
|---|
| >COG0385 Predicted Na+-dependent transporter [General function prediction only] | Back alignment and domain information |
|---|
| >PF03956 DUF340: Membrane protein of unknown function (DUF340); InterPro: IPR005642 Members of this family contain a conserved core of four predicted transmembrane segments | Back alignment and domain information |
|---|
| >PF01758 SBF: Sodium Bile acid symporter family; InterPro: IPR002657 This family of proteins are found both in prokaryotes and eukaryotes | Back alignment and domain information |
|---|
| >KOG3542 consensus cAMP-regulated guanine nucleotide exchange factor [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins | Back alignment and domain information |
|---|
| >PRK12460 2-keto-3-deoxygluconate permease; Provisional | Back alignment and domain information |
|---|
| >TIGR00210 gltS sodium--glutamate symport carrier (gltS) | Back alignment and domain information |
|---|
| >PF03390 2HCT: 2-hydroxycarboxylate transporter family; InterPro: IPR004679 The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom | Back alignment and domain information |
|---|
| >TIGR00832 acr3 arsenical-resistance protein | Back alignment and domain information |
|---|
| >TIGR00783 ccs citrate carrier protein, CCS family | Back alignment and domain information |
|---|
| >PRK05326 potassium/proton antiporter; Reviewed | Back alignment and domain information |
|---|
| >COG3493 CitS Na+/citrate symporter [Energy production and conversion] | Back alignment and domain information |
|---|
| >COG0798 ACR3 Arsenite efflux pump ACR3 and related permeases [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >TIGR00698 conserved hypothetical integral membrane protein | Back alignment and domain information |
|---|
| >TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family | Back alignment and domain information |
|---|
| >COG2431 Predicted membrane protein [Function unknown] | Back alignment and domain information |
|---|
| >PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate | Back alignment and domain information |
|---|
| >TIGR00808 malonate_madM malonate transporter, MadM subunit | Back alignment and domain information |
|---|
| >PF05145 AmoA: Putative ammonia monooxygenase; InterPro: IPR007820 This family contains sequences annotated as ammonia monooxygenase | Back alignment and domain information |
|---|
| >COG2985 Predicted permease [General function prediction only] | Back alignment and domain information |
|---|
| >TIGR00844 c_cpa1 na(+)/h(+) antiporter | Back alignment and domain information |
|---|
| >PRK04972 putative transporter; Provisional | Back alignment and domain information |
|---|
| >COG3180 AbrB Putative ammonia monooxygenase [General function prediction only] | Back alignment and domain information |
|---|
| >PRK12460 2-keto-3-deoxygluconate permease; Provisional | Back alignment and domain information |
|---|
| >COG2855 Predicted membrane protein [Function unknown] | Back alignment and domain information |
|---|
| >COG1346 LrgB Putative effector of murein hydrolase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 68.3 bits (166), Expect = 1e-11
Identities = 94/651 (14%), Positives = 188/651 (28%), Gaps = 187/651 (28%)
Query: 304 KGESQQSLHYFWEMVAYIANTL-IFILSGVVIAEGILGNDKIF-----QNHGNSWGYLIL 357
K +L FW +++ + F+ E +L + F + +
Sbjct: 58 KDAVSGTLRLFWTLLSKQEEMVQKFV-------EEVLRINYKFLMSPIKTEQRQPSMMTR 110
Query: 358 LYIFVQVSRLFVVGTLYP-----------VLRNFGYGLEWKEAIILVWSGLRGAVALSLS 406
+YI Q RL+ ++ LR L + +++ G+ G+ ++
Sbjct: 111 MYIE-QRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLID--GVLGSGKTWVA 167
Query: 407 LSVKRSSGGSSLITSETGTLFVFFTGGIVFLTLIVNGSTTQYILHLLDMDKLSATKRRIL 466
L V S + I +L L S + L +
Sbjct: 168 LDVCLSYK-----------VQCKMDFKIFWLNLKNCNSPETVLEMLQKL----------- 205
Query: 467 DYTKYEMLNTAFKTFGDLGDDEELGPVDWPTVKR-------YIRCLNDLEGVPMHPHSAS 519
++ + + D + +L R Y CL L V +
Sbjct: 206 ----LYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNV-----QNA 256
Query: 520 ETGDSLDPTNLRDIRIRLLNGVQAAYWAMLDEGRITQTAANILMQSVDEGIDLASNELCD 579
+ ++ + + ++L + T+ S ++ +
Sbjct: 257 KAWNAFN------LSCKIL--L------------TTRFKQVTDFLSAATTTHISLDHHSM 296
Query: 580 WRGLKDNVSFPNYYKFLQTSMFPQKLITYFTVERLE------FACSICAAFLRAHKIARQ 633
L + K+L PQ L E SI A +R
Sbjct: 297 --TLTPDEVKSLLLKYLDCR--PQDL-------PREVLTTNPRRLSIIAESIRDGLATWD 345
Query: 634 QLHDFIGDSGIASVVIEES--KVEGEDARK-------FLEDVRVNFP-QVLHVV---KTR 680
D + +IE S +E + RK F + P +L ++ +
Sbjct: 346 NWKHVNCDK--LTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHI--PTILLSLIWFDVIK 401
Query: 681 QVTYSVLNHLIDYIQNLEKVGLLEE--KEM-LHLHDAVQSDLKRLLRNPPLVKFPKISDL 737
V+N L Y L+E+ KE + + + +LK K+ +
Sbjct: 402 SDVMVVVNKLHKY-------SLVEKQPKESTISIPS-IYLELKV-----------KLENE 442
Query: 738 ISAHPLLRELPPSVREPLELSTKEIMK--------------LSGVTLYREGSKPSGIWLI 783
+ H + + P + +++ L + + ++L
Sbjct: 443 YALHRSIVD---HYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFL- 498
Query: 784 SNGVVKWTSKSIRNKHSLHPVFTHGSNLGLYEVLIGKPYMSDMVTDSVVLCFFIESDKIL 843
+ ++ + IR H GS L + L K Y + ++D
Sbjct: 499 -D--FRFLEQKIR--HDSTAWNASGSILNTLQQL--KFYKP----------YICDNDPKY 541
Query: 844 SILRSDPAVEDFLWQQSAIAL----SRILLPQIFEKLTMQDMRALIAERSK 890
L + + DFL + + + +L +I L M + A+ E K
Sbjct: 542 ERLVNA--ILDFLPKIEENLICSKYTDLL--RI--AL-MAEDEAIFEEAHK 585
|
| >2pqq_A Putative transcriptional regulator; APC7345, streptomyces coelicolor structural genomics, PSI-2, protein structure initiative; 2.00A {Streptomyces coelicolor A3} Length = 149 | Back alignment and structure |
|---|
| >3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A* Length = 227 | Back alignment and structure |
|---|
| >3gyd_A CNMP-BD protein, cyclic nucleotide-binding domain; nucleotide binding protein, structural genomics; HET: MSE CMP; 1.79A {Methylobacillus flagellatus KT} Length = 187 | Back alignment and structure |
|---|
| >3mdp_A Cyclic nucleotide-binding domain (CNMP-BD) protei; structural genomics, joint center for structural genomics; HET: MSE; 1.90A {Geobacter metallireducens} Length = 142 | Back alignment and structure |
|---|
| >2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A* Length = 291 | Back alignment and structure |
|---|
| >2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A* Length = 291 | Back alignment and structure |
|---|
| >4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus} Length = 216 | Back alignment and structure |
|---|
| >2z69_A DNR protein; beta barrel, dimerization helix, transcription regulator; 2.10A {Pseudomonas aeruginosa} Length = 154 | Back alignment and structure |
|---|
| >3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A* Length = 237 | Back alignment and structure |
|---|
| >3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300} Length = 231 | Back alignment and structure |
|---|
| >3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus} Length = 299 | Back alignment and structure |
|---|
| >3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656} Length = 220 | Back alignment and structure |
|---|
| >3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B* Length = 416 | Back alignment and structure |
|---|
| >3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae} Length = 246 | Back alignment and structure |
|---|
| >3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa} Length = 227 | Back alignment and structure |
|---|
| >4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens} Length = 381 | Back alignment and structure |
|---|
| >2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2 Length = 232 | Back alignment and structure |
|---|
| >1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2 Length = 213 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 967 | |||
| 2ptm_A | 198 | Hyperpolarization-activated (IH) channel; ION chan | 99.89 | |
| 3bpz_A | 202 | Potassium/sodium hyperpolarization-activated cycli | 99.87 | |
| 4ev0_A | 216 | Transcription regulator, CRP family; CAMP binding, | 99.86 | |
| 1zyb_A | 232 | Transcription regulator, CRP family; NP_813211.1, | 99.85 | |
| 3ukn_A | 212 | Novel protein similar to vertebrate potassium VOL | 99.85 | |
| 3d0s_A | 227 | Transcriptional regulatory protein; CAMP receptor | 99.85 | |
| 3dv8_A | 220 | Transcriptional regulator, CRP/FNR family; cyclic | 99.84 | |
| 3dkw_A | 227 | DNR protein; CRP-FNR, HTH, beta barrel, dimerizati | 99.84 | |
| 3fx3_A | 237 | Cyclic nucleotide-binding protein; helix_TURN_heli | 99.84 | |
| 3e97_A | 231 | Transcriptional regulator, CRP/FNR family; YP_6044 | 99.84 | |
| 3dn7_A | 194 | Cyclic nucleotide binding regulatory protein; stru | 99.84 | |
| 3iwz_A | 230 | CAP-like, catabolite activation-like protein; XCC, | 99.83 | |
| 1o5l_A | 213 | Transcriptional regulator, CRP family; TM1171, str | 99.82 | |
| 2gau_A | 232 | Transcriptional regulator, CRP/FNR family; structu | 99.81 | |
| 3ryp_A | 210 | Catabolite gene activator; CAMP receptor protein ( | 99.81 | |
| 3mdp_A | 142 | Cyclic nucleotide-binding domain (CNMP-BD) protei; | 99.8 | |
| 2oz6_A | 207 | Virulence factor regulator; winged helix, helix-tu | 99.8 | |
| 2fmy_A | 220 | COOA, carbon monoxide oxidation system transcripti | 99.79 | |
| 3kcc_A | 260 | Catabolite gene activator; helix-turn-helix, CAMP, | 99.79 | |
| 2pqq_A | 149 | Putative transcriptional regulator; APC7345, strep | 99.78 | |
| 3of1_A | 246 | CAMP-dependent protein kinase regulatory subunit; | 99.78 | |
| 1ft9_A | 222 | Carbon monoxide oxidation system transcription reg | 99.78 | |
| 3gyd_A | 187 | CNMP-BD protein, cyclic nucleotide-binding domain; | 99.78 | |
| 2z69_A | 154 | DNR protein; beta barrel, dimerization helix, tran | 99.77 | |
| 3e6c_C | 250 | CPRK, cyclic nucleotide-binding protein; CPRK, hal | 99.77 | |
| 3shr_A | 299 | CGMP-dependent protein kinase 1; cyclic nucleotide | 99.76 | |
| 3tnp_B | 416 | CAMP-dependent protein kinase type II-beta regula | 99.75 | |
| 2qcs_B | 291 | CAMP-dependent protein kinase type I-alpha regula | 99.74 | |
| 3idb_B | 161 | CAMP-dependent protein kinase type II-beta regulat | 99.74 | |
| 4din_B | 381 | CAMP-dependent protein kinase type I-beta regulat | 99.73 | |
| 3la7_A | 243 | Global nitrogen regulator; activator, DNA-binding, | 99.73 | |
| 2bgc_A | 238 | PRFA; bacterial infection, human pathogen, transcr | 99.72 | |
| 1vp6_A | 138 | CNBD, cyclic-nucleotide binding domain of mesorhiz | 99.71 | |
| 3ocp_A | 139 | PRKG1 protein; serine/threonine kinase, TF2I and I | 99.7 | |
| 4f8a_A | 160 | Potassium voltage-gated channel subfamily H membe; | 99.69 | |
| 4ava_A | 333 | Lysine acetyltransferase; allosteric regulation, d | 99.68 | |
| 3pna_A | 154 | CAMP-dependent protein kinase type I-alpha regula | 99.68 | |
| 1wgp_A | 137 | Probable cyclic nucleotide-gated ION channel 6; cy | 99.67 | |
| 3shr_A | 299 | CGMP-dependent protein kinase 1; cyclic nucleotide | 99.67 | |
| 3b02_A | 195 | Transcriptional regulator, CRP family; structural | 99.67 | |
| 1o7f_A | 469 | CAMP-dependent RAP1 guanine-nucleotide exchange fa | 99.6 | |
| 2d93_A | 134 | RAP guanine nucleotide exchange factor 6; CNMP_bin | 99.59 | |
| 2qcs_B | 291 | CAMP-dependent protein kinase type I-alpha regula | 99.59 | |
| 2zcw_A | 202 | TTHA1359, transcriptional regulator, FNR/CRP famil | 99.59 | |
| 3tnp_B | 416 | CAMP-dependent protein kinase type II-beta regula | 99.57 | |
| 3of1_A | 246 | CAMP-dependent protein kinase regulatory subunit; | 99.56 | |
| 4din_B | 381 | CAMP-dependent protein kinase type I-beta regulat | 99.56 | |
| 1zcd_A | 388 | Na(+)/H(+) antiporter 1; membrane protein; 3.45A { | 99.51 | |
| 3beh_A | 355 | MLL3241 protein; transmembrane protein, membrane p | 99.45 | |
| 4f7z_A | 999 | RAP guanine nucleotide exchange factor 4; cyclic n | 99.44 | |
| 1o7f_A | 469 | CAMP-dependent RAP1 guanine-nucleotide exchange fa | 99.42 | |
| 3cf6_E | 694 | RAP guanine nucleotide exchange factor (GEF) 4; EP | 99.31 | |
| 4f7z_A | 999 | RAP guanine nucleotide exchange factor 4; cyclic n | 99.23 | |
| 2l0e_A | 33 | Sodium/hydrogen exchanger 1; transmembrane helix, | 98.15 | |
| 2htg_A | 28 | NHE-1, NHE1 isoform of Na+/H+ exchanger 1, solute; | 97.61 | |
| 2k3c_A | 33 | TMIX peptide; membrane peptide, dodecylphosphochol | 96.8 | |
| 2kbv_A | 28 | Sodium/hydrogen exchanger 1; transmembrane, peptid | 96.53 | |
| 3zux_A | 332 | Transporter, ASBTNM; transport protein, membrane p | 95.41 | |
| 1y4e_A | 27 | Sodium/hydrogen exchanger 1; NHE1 isoform, transme | 81.65 |
| >2ptm_A Hyperpolarization-activated (IH) channel; ION channel, cyclic nucleotide binding domain, C-linker, CAM SPHCN1, HCN; HET: CMP; 1.93A {Strongylocentrotus purpuratus} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.9e-22 Score=207.24 Aligned_cols=188 Identities=14% Similarity=0.222 Sum_probs=163.8
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccccchHh-HHHHHHHHHHHHHHhhcCCCCCCCCChhhHhhhCC
Q 002099 664 EDVRVNFPQVLHVVKTRQVTYSVLNHLIDYIQNLEKVGLLEEKE-MLHLHDAVQSDLKRLLRNPPLVKFPKISDLISAHP 742 (967)
Q Consensus 664 ~~l~~~~p~i~~~l~t~~~~~~ll~~~~~~~~~l~~~G~l~~~e-~~~l~~~i~~~l~~l~~~~~~~~~~~~~~~l~~~~ 742 (967)
.+++.+..++.++|+.++++..+..++++|+++.|+....++++ ..++.+.+..++..... .++++++|
T Consensus 8 ~~~~~~~~~i~~~m~~~~i~~~l~~rv~~y~~~~~~~~~~~e~~il~~l~~~Lr~~i~~~~~----------~~~l~~~~ 77 (198)
T 2ptm_A 8 RQYREKLKQVEEYMQYRKLPSHLRNKILDYYEYRYRGKMFDERHIFREVSESIRQDVANYNC----------RDLVASVP 77 (198)
T ss_dssp HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTTCCCCSHHHHHHSCHHHHHHHHHHHT----------HHHHHHCG
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcccCCCHHHHHHHcCHHHHHHHHHHHH----------HHHHhcCc
Confidence 55677778899999999999999999999999999866566554 34555666665553222 57899999
Q ss_pred CCCCCChhhhHHhhhccEEEEecCCCeeecCCCCCCeEEEEeeeeEEEEEeeCCCceeEeeeccCCCeechhhhhcCCcc
Q 002099 743 LLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLYEVLIGKPY 822 (967)
Q Consensus 743 lF~~l~~~~l~~l~~~~~~~~~~~ge~I~~eGe~~~~ly~I~~G~V~v~~~~~~g~~~~~~~l~~G~~fGe~~ll~~~~~ 822 (967)
+|+++++++++.+...++.+.|.||++|+++||+++++|+|.+|.|+++. .+|+ .+..+++|++|||.+++.+.|+
T Consensus 78 ~f~~l~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~~~~--~~g~--~~~~l~~G~~fGe~~~~~~~~~ 153 (198)
T 2ptm_A 78 FFVGADSNFVTRVVTLLEFEVFQPADYVIQEGTFGDRMFFIQQGIVDIIM--SDGV--IATSLSDGSYFGEICLLTRERR 153 (198)
T ss_dssp GGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCSEEEEEEECCEEEEC--TTSC--EEEEECTTCEESCHHHHHSSCC
T ss_pred chhcCCHHHHHHHHHhccceeeCCCCEEEECCCcCcEEEEEEeCEEEEEe--cCCe--EEEEecCCCEechHHHcCCCcc
Confidence 99999999999999999999999999999999999999999999999986 3455 5678999999999999999999
Q ss_pred eeEEEEcceEEEEEEcHHHHHHHHhhCcHHHHHHHHHHHHHHH
Q 002099 823 MSDMVTDSVVLCFFIESDKILSILRSDPAVEDFLWQQSAIALS 865 (967)
Q Consensus 823 ~atv~A~~~~~l~~i~~~~f~~ll~~~p~~~~~l~~~~~~~l~ 865 (967)
.++++|.++|+++.|++++|.++++++|.+...+++.+..++.
T Consensus 154 ~~~~~a~~~~~l~~i~~~~f~~ll~~~p~~~~~~~~~~~~rl~ 196 (198)
T 2ptm_A 154 VASVKCETYCTLFSLSVQHFNQVLDEFPAMRKTMEEIAVRRLT 196 (198)
T ss_dssp SSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHTCC-
T ss_pred ceEEEEeeEEEEEEEeHHHHHHHHHHChHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999988887766654
|
| >3bpz_A Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2; CNBD, C-linker, pacemaker, HCN, HCN2, CAP, PKA, CAMP, ION channel; HET: CMP; 1.65A {Mus musculus} PDB: 3ffq_A 1q3e_A* 1q43_A* 1q5o_A* 3u10_A* 2q0a_A* 3etq_A* 3u11_A* 3otf_A* 3u0z_A* | Back alignment and structure |
|---|
| >4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus} | Back alignment and structure |
|---|
| >1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2 | Back alignment and structure |
|---|
| >3ukn_A Novel protein similar to vertebrate potassium VOL channel, subfamily H (EAG-related)...; KCNH, ELK, ERG, CNBD, CNBHD, C-linker, ION channel; 2.20A {Danio rerio} PDB: 3ukt_B 3ukv_B | Back alignment and structure |
|---|
| >3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A* | Back alignment and structure |
|---|
| >3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656} | Back alignment and structure |
|---|
| >3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
| >3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A* | Back alignment and structure |
|---|
| >3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300} | Back alignment and structure |
|---|
| >3dn7_A Cyclic nucleotide binding regulatory protein; structural genomics, APC88869, cyclic nucleotide binding REG protein, PSI-2; 1.80A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
| >3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
| >1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2 | Back alignment and structure |
|---|
| >2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2 | Back alignment and structure |
|---|
| >3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ... | Back alignment and structure |
|---|
| >3mdp_A Cyclic nucleotide-binding domain (CNMP-BD) protei; structural genomics, joint center for structural genomics; HET: MSE; 1.90A {Geobacter metallireducens} | Back alignment and structure |
|---|
| >2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2 | Back alignment and structure |
|---|
| >2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A* | Back alignment and structure |
|---|
| >3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli} | Back alignment and structure |
|---|
| >2pqq_A Putative transcriptional regulator; APC7345, streptomyces coelicolor structural genomics, PSI-2, protein structure initiative; 2.00A {Streptomyces coelicolor A3} | Back alignment and structure |
|---|
| >3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1 | Back alignment and structure |
|---|
| >3gyd_A CNMP-BD protein, cyclic nucleotide-binding domain; nucleotide binding protein, structural genomics; HET: MSE CMP; 1.79A {Methylobacillus flagellatus KT} | Back alignment and structure |
|---|
| >2z69_A DNR protein; beta barrel, dimerization helix, transcription regulator; 2.10A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
| >3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A | Back alignment and structure |
|---|
| >3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus} | Back alignment and structure |
|---|
| >3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B* | Back alignment and structure |
|---|
| >2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A* | Back alignment and structure |
|---|
| >3idb_B CAMP-dependent protein kinase type II-beta regulatory subunit, CAMP-dependent protein kinase catalytic subunit alpha; PKA, SPR, affinity; HET: TPO SEP ANP; 1.62A {Rattus norvegicus} PDB: 3idc_B* | Back alignment and structure |
|---|
| >4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens} | Back alignment and structure |
|---|
| >3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A* | Back alignment and structure |
|---|
| >2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A | Back alignment and structure |
|---|
| >1vp6_A CNBD, cyclic-nucleotide binding domain of mesorhizobium LOTI CNG potassium channel; dimer helical bundle beta barrel core with cyclic AMP bound; HET: CMP; 1.70A {Mesorhizobium loti} SCOP: b.82.3.2 PDB: 3cl1_A* 2k0g_A* 2kxl_A 3clp_A* 1u12_A 3co2_A | Back alignment and structure |
|---|
| >3ocp_A PRKG1 protein; serine/threonine kinase, TF2I and IRAG, transferase; HET: CMP; 2.49A {Homo sapiens} PDB: 3od0_A* 3ogj_A* | Back alignment and structure |
|---|
| >4f8a_A Potassium voltage-gated channel subfamily H membe; probable regulatory domain of potassium channel, membrane PR transport protein; 2.20A {Mus musculus} | Back alignment and structure |
|---|
| >4ava_A Lysine acetyltransferase; allosteric regulation, domain coupling; HET: ACO; 1.70A {Mycobacterium tuberculosis} PDB: 4avb_A* 4avc_A* | Back alignment and structure |
|---|
| >3pna_A CAMP-dependent protein kinase type I-alpha regula subunit; beta-barrel, CAMP-binding, catalytic subunit, transferase; HET: CMP; 1.50A {Bos taurus} PDB: 3fhi_B* 3iia_A 3plq_A* 1u7e_B* 3pvb_B* | Back alignment and structure |
|---|
| >1wgp_A Probable cyclic nucleotide-gated ION channel 6; cyclic nucleotide monophosphate, CNMP, CNMP-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.82.3.2 | Back alignment and structure |
|---|
| >3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus} | Back alignment and structure |
|---|
| >3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A | Back alignment and structure |
|---|
| >1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2 | Back alignment and structure |
|---|
| >2d93_A RAP guanine nucleotide exchange factor 6; CNMP_binding domain, PDZ domain containing guanine nucleotide exchange factor 2, PDZ-GEF2, RA-GEF-2; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A* | Back alignment and structure |
|---|
| >2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus} | Back alignment and structure |
|---|
| >3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B* | Back alignment and structure |
|---|
| >3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens} | Back alignment and structure |
|---|
| >1zcd_A Na(+)/H(+) antiporter 1; membrane protein; 3.45A {Escherichia coli} PDB: 3fi1_A | Back alignment and structure |
|---|
| >3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A* | Back alignment and structure |
|---|
| >4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E | Back alignment and structure |
|---|
| >1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2 | Back alignment and structure |
|---|
| >3cf6_E RAP guanine nucleotide exchange factor (GEF) 4; EPAC, rapgef4, CAMP, SP-camps, GEF, gunanine nucleotide exchange factor, G-protein, GTP-binding, nucleotide-binding; HET: SP1; 2.20A {Mus musculus} | Back alignment and structure |
|---|
| >4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E | Back alignment and structure |
|---|
| >2l0e_A Sodium/hydrogen exchanger 1; transmembrane helix, membrane protein, NHE1; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2htg_A NHE-1, NHE1 isoform of Na+/H+ exchanger 1, solute; membrane protein, transmembrane segment, helix-KINK-helix; NMR {Synthetic} | Back alignment and structure |
|---|
| >2k3c_A TMIX peptide; membrane peptide, dodecylphosphocholine micelle, NHE1, Na+/H+ transporter, metal transport; NMR {Synthetic} | Back alignment and structure |
|---|
| >2kbv_A Sodium/hydrogen exchanger 1; transmembrane, peptide, NHE1, micelle, alternative splicing, antiport, glycoprotein, ION transport, membrane; NMR {Synthetic} | Back alignment and structure |
|---|
| >3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A* | Back alignment and structure |
|---|
| >1y4e_A Sodium/hydrogen exchanger 1; NHE1 isoform, transmembrane, membrane protein; HET: HSL; NMR {Homo sapiens} | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 967 | ||||
| d1vp6a_ | 133 | b.82.3.2 (A:) Putative ion channel CnbD {Mesorhizo | 3e-07 | |
| d1o7fa2 | 155 | b.82.3.2 (A:13-167) Regulatory domain of Epac2, do | 3e-06 | |
| d1ne6a1 | 136 | b.82.3.2 (A:109-244) Regulatory subunit of Protein | 1e-05 | |
| d1ne6a2 | 132 | b.82.3.2 (A:245-376) Regulatory subunit of Protein | 5e-05 | |
| d1cx4a2 | 147 | b.82.3.2 (A:266-412) Regulatory subunit of Protein | 0.001 | |
| d1o7fa3 | 124 | b.82.3.2 (A:322-445) Regulatory domain of Epac2, d | 0.003 |
| >d1vp6a_ b.82.3.2 (A:) Putative ion channel CnbD {Mesorhizobium loti [TaxId: 381]} Length = 133 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Double-stranded beta-helix superfamily: cAMP-binding domain-like family: cAMP-binding domain domain: Putative ion channel CnbD species: Mesorhizobium loti [TaxId: 381]
Score = 48.2 bits (114), Expect = 3e-07
Identities = 21/131 (16%), Positives = 48/131 (36%), Gaps = 7/131 (5%)
Query: 731 FPKISDLISAHPLLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKW 790
F + L++A PL ++L P+V + + + +G + R G ++ + G V
Sbjct: 6 FVRNWQLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSV 65
Query: 791 TSKSIRNKHSLHPVFTHGSNLGLYEVLIGKPYMSDMVTDSVVLCFFIESDKILSILRSDP 850
G+ G ++ G+P + + + V + S + S P
Sbjct: 66 A-------TPNPVELGPGAFFGEMALISGEPRSATVSAATTVSLLSLHSADFQMLCSSSP 118
Query: 851 AVEDFLWQQSA 861
+ + + +
Sbjct: 119 EIAEIFRKTAL 129
|
| >d1o7fa2 b.82.3.2 (A:13-167) Regulatory domain of Epac2, domains 1 and 3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 155 | Back information, alignment and structure |
|---|
| >d1ne6a1 b.82.3.2 (A:109-244) Regulatory subunit of Protein kinase A {Cow (Bos taurus) [TaxId: 9913]} Length = 136 | Back information, alignment and structure |
|---|
| >d1ne6a2 b.82.3.2 (A:245-376) Regulatory subunit of Protein kinase A {Cow (Bos taurus) [TaxId: 9913]} Length = 132 | Back information, alignment and structure |
|---|
| >d1cx4a2 b.82.3.2 (A:266-412) Regulatory subunit of Protein kinase A {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 147 | Back information, alignment and structure |
|---|
| >d1o7fa3 b.82.3.2 (A:322-445) Regulatory domain of Epac2, domains 1 and 3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 124 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 967 | |||
| d1q3ea_ | 193 | HCN pacemaker channel {Mouse (Mus musculus) [TaxId | 99.87 | |
| d1cx4a2 | 147 | Regulatory subunit of Protein kinase A {Rat (Rattu | 99.81 | |
| d1ne6a2 | 132 | Regulatory subunit of Protein kinase A {Cow (Bos t | 99.8 | |
| d1cx4a1 | 136 | Regulatory subunit of Protein kinase A {Rat (Rattu | 99.79 | |
| d1ne6a1 | 136 | Regulatory subunit of Protein kinase A {Cow (Bos t | 99.78 | |
| d1vp6a_ | 133 | Putative ion channel CnbD {Mesorhizobium loti [Tax | 99.78 | |
| d1zyba2 | 147 | Probable transcription regulator BT4300, N-termina | 99.77 | |
| d2gaua2 | 142 | Transcriptional regulator PG0396, N-terminal domai | 99.76 | |
| d2oz6a2 | 134 | Cyclic AMP receptor-like protein Vfr {Pseudomonas | 99.72 | |
| d1i5za2 | 132 | Catabolite gene activator protein, N-terminal doma | 99.72 | |
| d3e5ua2 | 139 | Chlorophenol reduction protein CprK {Desulfitobact | 99.71 | |
| d1ft9a2 | 132 | CO-sensing protein CooA, N-terminal domain {Rhodos | 99.7 | |
| d1o7fa2 | 155 | Regulatory domain of Epac2, domains 1 and 3 {Mouse | 99.7 | |
| d1o7fa3 | 124 | Regulatory domain of Epac2, domains 1 and 3 {Mouse | 99.7 | |
| d1wgpa_ | 137 | Probable cyclic nucleotide-gated ion channel 6 {Th | 99.69 | |
| d1o5la1 | 129 | CRP-like transcriptional regulator TM1171, N-termi | 99.68 | |
| d2zcwa2 | 112 | Transcriptional regulator TTHA1359, N-terminal dom | 99.53 | |
| d2bgca2 | 131 | Listeriolysin regulatory protein PrfA, N-terminal | 94.39 | |
| d1i5za1 | 69 | Catabolite gene activator protein (CAP), C-termina | 83.78 | |
| d1yhfa1 | 112 | Hypothetical protein SPy1581 {Streptococcus pyogen | 82.5 |
| >d1q3ea_ b.82.3.2 (A:) HCN pacemaker channel {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Double-stranded beta-helix superfamily: cAMP-binding domain-like family: cAMP-binding domain domain: HCN pacemaker channel species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.87 E-value=7.5e-22 Score=199.40 Aligned_cols=187 Identities=17% Similarity=0.244 Sum_probs=161.9
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccccchHh-HHHHHHHHHHHHHHhhcCCCCCCCCChhhHhhhCC
Q 002099 664 EDVRVNFPQVLHVVKTRQVTYSVLNHLIDYIQNLEKVGLLEEKE-MLHLHDAVQSDLKRLLRNPPLVKFPKISDLISAHP 742 (967)
Q Consensus 664 ~~l~~~~p~i~~~l~t~~~~~~ll~~~~~~~~~l~~~G~l~~~e-~~~l~~~i~~~l~~l~~~~~~~~~~~~~~~l~~~~ 742 (967)
+.++.++.++.++|+.++++..+..++++|+++.|+....++.+ ...+++.+..++..... .++++++|
T Consensus 5 ~~f~~~~~~i~~~m~~~~i~~~l~~rv~~y~~~~~~~~~~~~~~i~~~lp~~l~~~i~~~~~----------~~~l~~~~ 74 (193)
T d1q3ea_ 5 RQYQEKYKQVEQYMSFHKLPADFRQKIHDYYEHRYQGKMFDEDSILGELNGPLREEIVNFNC----------RKLVASMP 74 (193)
T ss_dssp HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHSCHHHHHHHHHHHT----------HHHHHHCH
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcccccHHHHHHHCCcchhHHHHHHHH----------HHHHhcch
Confidence 56778888999999999999999999999999999877776665 34555555555543322 46899999
Q ss_pred CCCCCChhhhHHhhhccEEEEecCCCeeecCCCCCCeEEEEeeeeEEEEEeeCCCceeEeeeccCCCeechhhhhcCCcc
Q 002099 743 LLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLYEVLIGKPY 822 (967)
Q Consensus 743 lF~~l~~~~l~~l~~~~~~~~~~~ge~I~~eGe~~~~ly~I~~G~V~v~~~~~~g~~~~~~~l~~G~~fGe~~ll~~~~~ 822 (967)
+|++++++.+..++..+++..+.||++|+++||+++++|||.+|.|++...+ ++. ..+++|++|||.+++.+.++
T Consensus 75 ~F~~~~~~~l~~l~~~~~~~~~~~g~~I~~~g~~~~~ly~i~~G~v~v~~~~--~~~---~~l~~G~~fGe~~~~~~~~~ 149 (193)
T d1q3ea_ 75 LFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLTKG--NKE---MKLSDGSYFGEICLLTRGRR 149 (193)
T ss_dssp HHHTSCHHHHHHHHTTCEEEEECTTCEEECTTSBCCEEEEEEECCEEEEC-C--CCE---EEECTTCEECHHHHHHCSBC
T ss_pred HHHhhhHHHHHHHHHHHHHHhhccCceecccCCCCcceeEeeeeeEEeecCC--cce---eeeccceeeeeeeccCCCcc
Confidence 9999999999999999999999999999999999999999999999997543 222 36899999999999999999
Q ss_pred eeEEEEcceEEEEEEcHHHHHHHHhhCcHHHHHHHHHHHHHHH
Q 002099 823 MSDMVTDSVVLCFFIESDKILSILRSDPAVEDFLWQQSAIALS 865 (967)
Q Consensus 823 ~atv~A~~~~~l~~i~~~~f~~ll~~~p~~~~~l~~~~~~~l~ 865 (967)
+++++|.++|+++.|++++|.++++++|.+.+.+...+..|+.
T Consensus 150 ~~~~~a~~~~~l~~l~~~~f~~ll~~~p~~~~~~~~~~~~RL~ 192 (193)
T d1q3ea_ 150 TASVRADTYCRLYSLSVDNFNEVLEEYPMMRRAFETVAIDRLD 192 (193)
T ss_dssp SSEEEESSCEEEEEEEHHHHHHHHHHSGGGHHHHHHHHHHHHT
T ss_pred cccceecCceEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHcC
Confidence 9999999999999999999999999999999998887776653
|
| >d1cx4a2 b.82.3.2 (A:266-412) Regulatory subunit of Protein kinase A {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
| >d1ne6a2 b.82.3.2 (A:245-376) Regulatory subunit of Protein kinase A {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
| >d1cx4a1 b.82.3.2 (A:130-265) Regulatory subunit of Protein kinase A {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
| >d1ne6a1 b.82.3.2 (A:109-244) Regulatory subunit of Protein kinase A {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
| >d1vp6a_ b.82.3.2 (A:) Putative ion channel CnbD {Mesorhizobium loti [TaxId: 381]} | Back information, alignment and structure |
|---|
| >d1zyba2 b.82.3.2 (A:1-147) Probable transcription regulator BT4300, N-terminal domain {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
| >d2gaua2 b.82.3.2 (A:10-151) Transcriptional regulator PG0396, N-terminal domain {Porphyromonas gingivalis [TaxId: 837]} | Back information, alignment and structure |
|---|
| >d2oz6a2 b.82.3.2 (A:9-142) Cyclic AMP receptor-like protein Vfr {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
| >d1i5za2 b.82.3.2 (A:6-137) Catabolite gene activator protein, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d3e5ua2 b.82.3.2 (A:9-147) Chlorophenol reduction protein CprK {Desulfitobacterium hafniense [TaxId: 49338]} | Back information, alignment and structure |
|---|
| >d1ft9a2 b.82.3.1 (A:2-133) CO-sensing protein CooA, N-terminal domain {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
| >d1o7fa2 b.82.3.2 (A:13-167) Regulatory domain of Epac2, domains 1 and 3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1o7fa3 b.82.3.2 (A:322-445) Regulatory domain of Epac2, domains 1 and 3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1wgpa_ b.82.3.2 (A:) Probable cyclic nucleotide-gated ion channel 6 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
| >d1o5la1 b.82.3.2 (A:1-129) CRP-like transcriptional regulator TM1171, N-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
| >d2bgca2 b.82.3.3 (A:7-137) Listeriolysin regulatory protein PrfA, N-terminal domain {Bacteria (Listeria monocytogenes) [TaxId: 1639]} | Back information, alignment and structure |
|---|
| >d1i5za1 a.4.5.4 (A:138-206) Catabolite gene activator protein (CAP), C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1yhfa1 b.82.1.9 (A:1-112) Hypothetical protein SPy1581 {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|