Citrus Sinensis ID: 002126

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960--

MQMDLQIKVAQAVHVLNHDTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQSAAKDALLNALLVAAKRFSSGPPQLLTQICLALSALILRAVEHGKPIEKLFYSLQNLQSQDNGNMAVLEMLTVLPEEVIDSQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQGSLAAHPLLNFVFNSLQVQSSFDVAIEVLVELVGRHEGLPQALLCRVPFLKELLLLPALTDGDEKVIGGLACLMSEIGQAAPSLIVEASPEALALADALLSCVAFPSEDWEIADSTLQFWSTLASYILGLDASIAKNKKHVEDMFFSVFSALLDALLLRAQVDESSFNDDGMVDLPDGLVQFRMNLVELLVDICQLLRSATFIQKVFFGSWGSANVPIPWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISAFQTNARPLLLFLAAGISEAVSSNACASALRKICEDASALIDEPSNLEILMWIGEALEKRHLPLEDEEEVVGAISLILGSVSNKELKNNLLARLLSSSYEAIGKLIDGDNNHSLIHNPATYTQILSSATRGLYRMGTVFSHLPVPLPTNPAGDDPIFALLRVFWPMLEKLFRSEHMENGNLSTAACRALSLAIQSSGQHFVTLLPQVLDCLSTNFVSFQNHECYIRTASVVIEEFGHKDEYGPLFVTTFERFSQAASVRALNSSYICDQEPDLVEAYTNFASTFVRTSRKEVLAASGALLEVSFQKAAICCTAMHRGAALAAMSYLSCFLEECLASLLGYTTSIPEGSFNAMAIQVISHSGEGLVSNVVYALLGVSAMSRVHKCATILQQLAAICSISERTSGKAILSWESLQGWLHSAVSLFLILIGAGSSSRVFKAGRN

ccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHccHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHcccccHHHHHHHHHHHcHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHcccccHHHHHHccc

ccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHcHHHccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHcccccccccHHHHHHHHHccHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHccccccccHHHHHccHHHHHHHHHHcccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHccccccHHHcccHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHcccHEEccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHcHHHHHHHHHHHHHcccHHcHHHHHHHHHHHHHHccHcccccccccccHHHHHHHHHHHHHHHHHHHccccccHEEEcccc

MQMDLQIKVAQAVHVLNHDTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQSAAKDALLNALLVAAKrfssgppqLLTQICLALSALILRAVEHGKPIEKLFYSLQnlqsqdngNMAVLEMLTVLpeevidsqasdcnissaHRSQYGQELLSHTPMVVEFLMQQsdkrfdggvpvqlhdRNRKILRCLLSWVRAGCfteisqgslaahplLNFVFNSLQVQSSFDVAIEVLVELVgrheglpqallcRVPFLKELlllpaltdgdekVIGGLACLMSEIGQAAPSLIVEASPEALALADALLScvafpsedweiADSTLQFWSTLASYILGLDASIAKNKKHVEDMFFSVFSALLDALLLRAQvdessfnddgmvdlpdGLVQFRMNLVELLVDICQLLRSATFIQKVFfgswgsanvpipwkeVETKLFALNVVSEVVlqegqafdfSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISAFQTNARPLLLFLAAGISEAVSSNACASALRKICEDAsalidepsnLEILMWIGEALekrhlpledeeEVVGAISLILGSVSNKELKNNLLARLLSSSYEAIGKLidgdnnhslihnpaTYTQILSSATRGLYRmgtvfshlpvplptnpagddpIFALLRVFWPMLEKLFRSehmengnlSTAACRALSLAIQSSGQHFVTLLPQVLDCLSTnfvsfqnhecyIRTASVVIEefghkdeygplfVTTFERFSQAASVRALNssyicdqepDLVEAYTNFASTFVRTSRKEVLAASGALLEVSFQKAAICCTAMHRGAALAAMSYLSCFLEECLASLLGyttsipegsfNAMAIQVISHSGEGLVSNVVYALLGVSAMSRVHKCATILQQLAAICSISERTSGKAILSWESLQGWLHSAVSLFLILIGAgsssrvfkagrn

MQMDLQIKVAQAVHVLNHDTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQSAAKDALLNALLVAAKRFSSGPPQLLTQICLALSALILRAVEHGKPIEKLFYSLQNLQSQDNGNMAVLEMLTVLPEEVIDSQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQGSLAAHPLLNFVFNSLQVQSSFDVAIEVLVELVGRHEGLPQALLCRVPFlkellllpalTDGDEKVIGGLACLMSEIGQAAPSLIVEASPEALALADALLSCVAFPSEDWEIADSTLQFWSTLASYILGLDASIAKNKKHVEDMFFSVFSALLDALLLRAQVDESSFNDDGMVDLPDGLVQFRMNLVELLVDICQLLRSATFIQKVFFGSWGSANVPIPWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISAFQTNARPLLLFLAAGISEAVSSNACASALRKICEDASALIDEPSNLEILMWIGEALEKRHLPLEDEEEVVGAISLILGSVSNKELKNNLLARLLSSSYEAIGKLIDGDNNHSLIHNPATYTQILSSATRGLYRMGTVFSHLPVPLPTNPAGDDPIFALLRVFWPMLEKLFRSEHMENGNLSTAACRALSLAIQSSGQHFVTLLPQVLDCLSTNFVSFQNHECYIRTASVVIEEFGHKDEYGPLFVTTFERFSQAASVRALNSSYICDQEPDLVEAYTNFASTFVRTSRKEVLAASGALLEVSFQKAAICCTAMHRGAALAAMSYLSCFLEECLASLLGYTTSIPEGSFNAMAIQVISHSGEGLVSNVVYALLGVSAMSRVHKCATILQQLAAICSISERTSGKAILSWESLQGWLHSAVSLFLILIGAGSSSRVFKAGRN

*****QIKVAQAVHVLNHDTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQSAAKDALLNALLVAAKRFSSGPPQLLTQICLALSALILRAVEHGKPIEKLFYSLQNLQSQDNGNMAVLEMLTVLPEEVID***************YGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQGSLAAHPLLNFVFNSLQVQSSFDVAIEVLVELVGRHEGLPQALLCRVPFLKELLLLPALTDGDEKVIGGLACLMSEIGQAAPSLIVEASPEALALADALLSCVAFPSEDWEIADSTLQFWSTLASYILGLDASIAKNKKHVEDMFFSVFSALLDALLLRAQVDESSFNDDGMVDLPDGLVQFRMNLVELLVDICQLLRSATFIQKVFFGSWGSANVPIPWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISAFQTNARPLLLFLAAGISEAVSSNACASALRKICEDASALIDEPSNLEILMWIGEALEKRHLPLEDEEEVVGAISLILGSVSNKELKNNLLARLLSSSYEAIGKLIDGDNNHSLIHNPATYTQILSSATRGLYRMGTVFSHLPVPLPTNPAGDDPIFALLRVFWPMLEKLFRSEHMENGNLSTAACRALSLAIQSSGQHFVTLLPQVLDCLSTNFVSFQNHECYIRTASVVIEEFGHKDEYGPLFVTTFERFSQAASVRALNSSYICDQEPDLVEAYTNFASTFVRTSRKEVLAASGALLEVSFQKAAICCTAMHRGAALAAMSYLSCFLEECLASLLGYTTSIPEGSFNAMAIQVISHSGEGLVSNVVYALLGVSAMSRVHKCATILQQLAAICSISERTSGKAILSWESLQGWLHSAVSLFLILIGAG***********

***DLQIKVAQAVHVLNHD******VAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQSAAKDALLNALLVAAKRFSSGPPQLLTQICLALSALILRAVEHGKPIEKLFYSLQNLQSQDNGNMAVLEMLTVLPEEVIDSQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQGSLAAHPLLNFVFNSLQVQSSFDVAIEVLVELVGRHEGLPQALLCRVPFLKELLLLPALTDGDEKVIGGLACLMSEIGQAAPSLIVEASPEALALADALLSCVAFPSEDWEIADSTLQFWSTLASYILGLDASIAKNKKHVEDMFFSVFSALLDALLLRAQVDESSFNDDGMVDLPDGLVQFRMNLVELLVDICQLLRSATFIQKVFFGSWG**N**IPWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISAFQTNARPLLLFLAAGISEAVSSNACASALRKICEDASALIDEPSNLEILMWIGEALEKRHLPLEDEEEVVGAISLILGSVSNKELKNNLLARLLSSSYEAIGKLID***********ATYTQILSSATRGLYRMGTVFSHLPVPLPTNPAGDDPIFALLRVFWPMLEKLFRSEHMENGNLSTAACRALSLAIQSSGQHFVTLLPQVLDCLSTNFVSFQNHECYIRTASVVIEEFGHKDEYGPLFVTTFERFSQAASVRALNSSYICDQEPDLVEAYTNFASTFVRTSRKEVLAASGALLEVSFQKAAICCTAMHRGAALAAMSYLSCFLEECLASLL*****IPEGSFNAMAIQVISHSGEGLVSNVVYALLGVSAMSRVHKCATILQQLAAICSISERTSGKAILSWESLQGWLHSAVSLFLIL***************

**MDLQIKVAQAVHVLNHDTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQSAAKDALLNALLVAAKRFSSGPPQLLTQICLALSALILRAVEHGKPIEKLFYSLQNLQSQDNGNMAVLEMLTVLPEEVIDSQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQGSLAAHPLLNFVFNSLQVQSSFDVAIEVLVELVGRHEGLPQALLCRVPFLKELLLLPALTDGDEKVIGGLACLMSEIGQAAPSLIVEASPEALALADALLSCVAFPSEDWEIADSTLQFWSTLASYILGLDASIAKNKKHVEDMFFSVFSALLDALLLRAQVDESSF*DDGMVDLPDGLVQFRMNLVELLVDICQLLRSATFIQKVFFGSWGSANVPIPWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISAFQTNARPLLLFLAAGISEAVSSNACASALRKICEDASALIDEPSNLEILMWIGEALEKRHLPLEDEEEVVGAISLILGSVSNKELKNNLLARLLSSSYEAIGKLIDGDNNHSLIHNPATYTQILSSATRGLYRMGTVFSHLPVPLPTNPAGDDPIFALLRVFWPMLEKLFRSEHMENGNLSTAACRALSLAIQSSGQHFVTLLPQVLDCLSTNFVSFQNHECYIRTASVVIEEFGHKDEYGPLFVTTFERFSQAASVRALNSSYICDQEPDLVEAYTNFASTFVRTSRKEVLAASGALLEVSFQKAAICCTAMHRGAALAAMSYLSCFLEECLASLLGYTTSIPEGSFNAMAIQVISHSGEGLVSNVVYALLGVSAMSRVHKCATILQQLAAICSISERTSGKAILSWESLQGWLHSAVSLFLILIGAGSS*********

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiii

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		962	2.2.26 [Sep-21-2011]
Q6P2B1		923	Transportin-3 OS=Mus musc	yes	no	0.831	0.866	0.228	9e-33
Q9Y5L0		923	Transportin-3 OS=Homo sap	yes	no	0.792	0.825	0.229	1e-32
Q9USZ2		955	Uncharacterized protein C	yes	no	0.714	0.719	0.248	7e-23
A7YWD2		963	Importin-13 OS=Bos taurus	no	no	0.729	0.728	0.213	6e-19
Q8K0C1		963	Importin-13 OS=Mus muscul	no	no	0.860	0.859	0.206	3e-18
O94829		963	Importin-13 OS=Homo sapie	no	no	0.860	0.859	0.206	5e-18
Q5R974		963	Importin-13 OS=Pongo abel	no	no	0.856	0.855	0.205	5e-18
Q9JM04		963	Importin-13 OS=Rattus nor	no	no	0.859	0.858	0.206	3e-17
Q99189		972	mRNA transport regulator	yes	no	0.528	0.522	0.223	7e-16
Q5ZIC8		958	Importin-13 OS=Gallus gal	no	no	0.855	0.859	0.215	3e-14

>sp\|Q6P2B1\|TNPO3_MOUSE Transportin-3 OS=Mus musculus GN=Tnpo3 PE=1 SV=1	Back alignment and function desciption

 Score =  143 bits (360), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 209/914 (22%), Positives = 383/914 (41%), Gaps = 114/914 (12%)

Query: 9   VAQAVHVLNHDTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQ 68
           V QAV  L HD +   +  A+ WL + Q++  AWEI+  +L   RQ    D E  +FAAQ
Sbjct: 11  VYQAVQALYHDPDPSGKERASFWLGELQRSVHAWEISDQLLQI-RQ----DVESCYFAAQ 65

Query: 69  ILKRKIQNEGYYLQSAAKDALLNALLVAAKRFSSGPPQLLTQICLALSALILRAVEHGKP 128
            +K KIQ   Y L + +  +L ++LL   +      P ++TQ+ LA++ L L+       
Sbjct: 66  TMKMKIQTSFYELPTDSHASLRDSLLTHIQNLKDLSPVIVTQLALAIADLALQMPSWKGC 125

Query: 129 IEKLFYSLQNLQSQDNGNMA-VLEMLTVLPEEVIDSQASDCNISSAHRSQYGQELLSHTP 187
           ++ L     N    D  ++  +LE+LTVLPEEV    +    I +  R++  ++L  ++ 
Sbjct: 126 VQTLVEKYSN----DVTSLPFLLEILTVLPEEV---HSRSLRIGANRRTEIIEDLAFYSS 178

Query: 188 MVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQGSLAAHPLLNFVF 247
            VV  LM   +K    G   ++     K+ RCL SW   G    +    +A + LL  +F
Sbjct: 179 TVVSLLMTCVEK---AGTDEKM---LMKVFRCLGSWFNLGV---LDSNFMANNKLLALLF 229

Query: 248 NSLQV--------QSSFDVAIEVLVELVGRHEGLPQAL-LCRVPFLKELLLLPALTDGDE 298
             LQ         +++ D     L  +      LP A+ L +     E     A+   D 
Sbjct: 230 EVLQQDKTSSNLHEAASDCVCSALYAIENVETNLPLAMQLFQGVLTLETAYHMAVAREDL 289

Query: 299 KVIGGLACLMSEIGQAAPSLIVEASPEALA---LADALLSCVAFPSEDWEIADSTLQFWS 355
             +     + +E+ +     IV    + L      + LL C   P   +E+ + +  FW 
Sbjct: 290 DKVLNYCRIFTELCETFLEKIVCTPGQGLGDLRTLELLLICAGHPQ--YEVVEISFNFWY 347

Query: 356 TLASYILGLDASIAKNKKHVEDMFFSVFSALLDALLLRAQVDESSFNDDGMVDLPDGLVQ 415
            L  ++         N + +  +F +    LL AL    Q++    + +G+ +  D   +
Sbjct: 348 RLGEHL------YKTNDEVIHSIFKAYIQRLLHALARHCQLEP---DHEGVPEETDDFGE 398

Query: 416 FRMNLVELLVDICQLLRSATFIQKVFFGSWGSANVPIPWKEVETKLFALNVVSEVVLQEG 475
           FRM + +L+ D+  L+ S     ++ + +    N   PW+  E  LF +  +++ V  E 
Sbjct: 399 FRMRVSDLVKDLIFLIGSMECFAQL-YSTLKEGNP--PWEVTEAVLFIMAAIAKSVDPEN 455

Query: 476 QAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLA-DVIGSYSKWISAFQTNARPLLLFL 534
                 V+  +V          L   +H   R  + +++G  S+ +        P+L +L
Sbjct: 456 NPTLVEVLEGVV---------HLPETVHTAVRYTSIELVGEMSEVVDRNPQFLDPVLGYL 506

Query: 535 AAGISEAVSSNACASALRKICEDASALIDEPSNLEILMWIGEALEKRHLPLEDEEEVVGA 594
             G+ E   ++A A A+  IC      + +  N   L+ I  +L+   L  E    ++  
Sbjct: 507 MKGLCEKPLASAAAKAIHNICSVCRDHMAQHFN--GLLEIAHSLDSFMLSPEAAVGLLKG 564

Query: 595 ISLILGSVSNKELKNNLLARLLSSSYEAIGKLIDGDNNHSLIHNPATYTQILSSATRGLY 654
            +L+L  +   ++    L+ L S    A+ KL+  + ++ +  +P  +          L 
Sbjct: 565 TALVLARLPLDKI-TECLSELCSVQVMALKKLLSQEPSNGISSDPTVF----------LD 613

Query: 655 RMGTVFSHLPVPLPTNPAGDD----PIFALLRVFWPMLEKLFRSEHMENGNLSTAACRAL 710
           R+  +F H      TNP  ++    P   +++  WP+L +   ++H  +  +    CR L
Sbjct: 614 RLAVIFRH------TNPIVENGQTHPCQKVIQEIWPVLSETL-NKHRADNRIVERCCRCL 666

Query: 711 SLAIQSSGQHFVTLLPQVLDCLSTNFVSFQNHECYIRTASVVIEEFGHK--------DEY 762
             A++  G+    LL Q L     N      H C++   S++++E+G +        D  
Sbjct: 667 RFAVRCVGKGSAALL-QPLVTQMVNVYHVHQHSCFLYLGSILVDEYGMEEGCRQGLLDML 725

Query: 763 GPLFVTTFERFSQAASVRALNSSYICDQEPDLVEAYTNFASTFVRTSRKEVLAASGALLE 822
             L + TF+   Q   ++           PD V+     A+ F++ S   +L +    + 
Sbjct: 726 QALCIPTFQLLEQQNGLQ---------NHPDTVDDLFRLATRFIQRSPVTLLRSQ---VV 773

Query: 823 VSFQKAAICCTAM-HRGAALAAMSYLSCFLEECLASLLGYTTSIPEGSF---NAMAIQVI 878
           +   + AI  T + HR A  + M +L   +   +A       +  E  F     +  QV+
Sbjct: 774 IPILQWAIASTTLDHRDANSSVMRFLRDLIHTGVA-------NDHEEDFELRKELIGQVM 826

Query: 879 SHSGEGLVSNVVYA 892
           S  G+ LVS +++ 
Sbjct: 827 SQLGQQLVSQLLHT 840

Seems to function in nuclear protein import as nuclear transport receptor. In vitro, mediates the nuclear import of splicing factor SR proteins RBM4, SFRS1 and SFRS2, by recognizing phosphorylated RS domains.
Mus musculus (taxid: 10090)

>sp\|Q9Y5L0\|TNPO3_HUMAN Transportin-3 OS=Homo sapiens GN=TNPO3 PE=1 SV=3	Back alignment and function description

>sp\|Q9USZ2\|YNR7_SCHPO Uncharacterized protein C11G11.07 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC11G11.07 PE=4 SV=2	Back alignment and function description

>sp\|A7YWD2\|IPO13_BOVIN Importin-13 OS=Bos taurus GN=IPO13 PE=2 SV=1	Back alignment and function description

>sp\|Q8K0C1\|IPO13_MOUSE Importin-13 OS=Mus musculus GN=Ipo13 PE=2 SV=1	Back alignment and function description

>sp\|O94829\|IPO13_HUMAN Importin-13 OS=Homo sapiens GN=IPO13 PE=1 SV=3	Back alignment and function description

>sp\|Q5R974\|IPO13_PONAB Importin-13 OS=Pongo abelii GN=IPO13 PE=2 SV=1	Back alignment and function description

>sp\|Q9JM04\|IPO13_RAT Importin-13 OS=Rattus norvegicus GN=Ipo13 PE=2 SV=1	Back alignment and function description

>sp\|Q99189\|MTR10_YEAST mRNA transport regulator MTR10 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MTR10 PE=1 SV=1	Back alignment and function description

>sp\|Q5ZIC8\|IPO13_CHICK Importin-13 OS=Gallus gallus GN=IPO13 PE=2 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		962
359488588		1015	PREDICTED: transportin-3-like [Vitis vin	0.974	0.923	0.807	0.0
255543441		1020	Transportin-3, putative [Ricinus communi	0.972	0.917	0.802	0.0
449501328		1029	PREDICTED: transportin-3-like [Cucumis s	0.974	0.910	0.775	0.0
224131372		1008	predicted protein [Populus trichocarpa]	0.961	0.917	0.776	0.0
356561051		1011	PREDICTED: transportin-3-like [Glycine m	0.974	0.926	0.754	0.0
449455816		1031	PREDICTED: LOW QUALITY PROTEIN: transpor	0.971	0.906	0.759	0.0
18391456		1005	exportin 1-like protein domain-containin	0.963	0.922	0.668	0.0
297849682		1007	hypothetical protein ARALYDRAFT_471447 [	0.963	0.920	0.670	0.0
15215746		1005	At1g12930/F13K23_14 [Arabidopsis thalian	0.963	0.922	0.667	0.0
8698739		974	Contains similarity to transportin-SR fr	0.931	0.919	0.643	0.0

>gi\|359488588\|ref\|XP_002276597.2\| PREDICTED: transportin-3-like [Vitis vinifera] gi\|296082227\|emb\|CBI21232.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

 Score = 1521 bits (3939), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 762/944 (80%), Positives = 838/944 (88%), Gaps = 7/944 (0%)

Query: 3   MDLQIKVAQAVHVLNHDTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQ----SFLT 58
           M+LQIKVAQAVHVLNHD++SCNRVAANQWLVQFQQTD AW++ATSILTSD      SFL+
Sbjct: 1   MELQIKVAQAVHVLNHDSQSCNRVAANQWLVQFQQTDLAWDVATSILTSDHHRHHHSFLS 60

Query: 59  DFEVEFFAAQILKRKIQNEGYYLQSAAKDALLNALLVAAKRFSSGPPQLLTQICLALSAL 118
           DFEVEFFAAQILKRKIQNEGYYLQ  AKDALLNALL+AAKRFSSGPPQLLTQICLALSAL
Sbjct: 61  DFEVEFFAAQILKRKIQNEGYYLQLGAKDALLNALLLAAKRFSSGPPQLLTQICLALSAL 120

Query: 119 ILRAVEHGKPIEKLFYSLQNLQSQDNGNMAVLEMLTVLPEEVIDSQASDCNISSAHRSQY 178
           I+R+ EH KPIE+LFYSLQNLQSQD+ N+AVLEMLTVLPEE++++Q  DCNISS  R QY
Sbjct: 121 IIRSTEHRKPIEQLFYSLQNLQSQDDSNIAVLEMLTVLPEEIVENQNIDCNISSDRRCQY 180

Query: 179 GQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQGSLA 238
           GQELLSHT  V+EFL+QQS+K FDGG+  QLH+RNRKILRCLLSWVRAGCF EI  G L 
Sbjct: 181 GQELLSHTTRVLEFLLQQSEKSFDGGI--QLHERNRKILRCLLSWVRAGCFAEIPPGLLP 238

Query: 239 AHPLLNFVFNSLQVQSSFDVAIEVLVELVGRHEGLPQALLCRVPFLKELLLLPALTDGDE 298
            HPLLNFV+NSLQV S+FD+AIEVL+ELVGRHEGLPQ LLCR+ FLKE+LLLPAL +GDE
Sbjct: 239 GHPLLNFVYNSLQVSSTFDLAIEVLIELVGRHEGLPQVLLCRIQFLKEVLLLPALNNGDE 298

Query: 299 KVIGGLACLMSEIGQAAPSLIVEASPEALALADALLSCVAFPSEDWEIADSTLQFWSTLA 358
           KVI GLACLMSEIGQAAPSLIVEAS EA  LADALLSCVAFPSEDWEIAD+TLQFWS+LA
Sbjct: 299 KVISGLACLMSEIGQAAPSLIVEASAEAHLLADALLSCVAFPSEDWEIADTTLQFWSSLA 358

Query: 359 SYILGLDASIAKNKKHVEDMFFSVFSALLDALLLRAQVDESSFNDD-GMVDLPDGLVQFR 417
           SYILGLD+   KNKK VEDMF  VFSALLDA LLRAQVD+S+FND+ G +DLPDGLV FR
Sbjct: 359 SYILGLDSDSGKNKKDVEDMFSPVFSALLDAFLLRAQVDDSTFNDESGTLDLPDGLVHFR 418

Query: 418 MNLVELLVDICQLLRSATFIQKVFFGSWGSANVPIPWKEVETKLFALNVVSEVVLQEGQA 477
           MNLVELLVDICQLL+S TFIQK+FFG W S N+PIPW++VETK+FALNVV+EVVLQEGQ 
Sbjct: 419 MNLVELLVDICQLLKSTTFIQKLFFGGWVSINLPIPWRDVETKMFALNVVAEVVLQEGQT 478

Query: 478 FDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISAFQTNARPLLLFLAAG 537
           FDFSVIMQL+ +LS+   ++LKGFM IVYRSLADV+GSYSK IS+F+TNARPLLLFLA G
Sbjct: 479 FDFSVIMQLLTILSSMAPDKLKGFMRIVYRSLADVVGSYSKLISSFRTNARPLLLFLATG 538

Query: 538 ISEAVSSNACASALRKICEDASALIDEPSNLEILMWIGEALEKRHLPLEDEEEVVGAISL 597
           ISE +SS+ACASALRK CEDASA+I EPSNLEILMWIGE LEKRHLPLEDEEEV+ AI+L
Sbjct: 539 ISEPLSSSACASALRKFCEDASAVICEPSNLEILMWIGEGLEKRHLPLEDEEEVISAITL 598

Query: 598 ILGSVSNKELKNNLLARLLSSSYEAIGKLIDGDNNHSLIHNPATYTQILSSATRGLYRMG 657
           IL SV NKELKNNLLARLLSSSYEAIGKLI  ++ HSL  NPA YTQIL+SA RGLYRMG
Sbjct: 599 ILSSVPNKELKNNLLARLLSSSYEAIGKLIGEEDKHSLKQNPAAYTQILTSAVRGLYRMG 658

Query: 658 TVFSHLPVPLPTNPAGDDPIFALLRVFWPMLEKLFRSEHMENGNLSTAACRALSLAIQSS 717
           TVFSHL  PL   P+ DDPI  LL VFWP+LEKLFRSEHMENG+LS AACRALS A+QSS
Sbjct: 659 TVFSHLAGPLSIGPSPDDPILVLLSVFWPVLEKLFRSEHMENGSLSAAACRALSQAVQSS 718

Query: 718 GQHFVTLLPQVLDCLSTNFVSFQNHECYIRTASVVIEEFGHKDEYGPLFVTTFERFSQAA 777
           GQHFVTLLP+VLDCLS NFV FQ+HECYIRTASVV+EEFGHK+EYGPLF++ FERF+ AA
Sbjct: 719 GQHFVTLLPEVLDCLSKNFVLFQSHECYIRTASVVLEEFGHKEEYGPLFISAFERFTYAA 778

Query: 778 SVRALNSSYICDQEPDLVEAYTNFASTFVRTSRKEVLAASGALLEVSFQKAAICCTAMHR 837
           SV ALNSSYICDQEPDLVEAYTNF STFVR S KEVLAASG+LLEVSFQKAAICCTAMHR
Sbjct: 779 SVMALNSSYICDQEPDLVEAYTNFTSTFVRGSPKEVLAASGSLLEVSFQKAAICCTAMHR 838

Query: 838 GAALAAMSYLSCFLEECLASLLGYTTSIPEGSFNAMAIQVISHSGEGLVSNVVYALLGVS 897
           GAALAAMSY+SCFLE  L SLL   T IPEGSF+A+AIQVISHSGEGLVSNVVYALLGVS
Sbjct: 839 GAALAAMSYMSCFLEVGLISLLESMTCIPEGSFSAVAIQVISHSGEGLVSNVVYALLGVS 898

Query: 898 AMSRVHKCATILQQLAAICSISERTSGKAILSWESLQGWLHSAV 941
           AMSRVHK ATILQQLAA+CS+SE T+ KAIL WESL  WL  AV
Sbjct: 899 AMSRVHKSATILQQLAAVCSLSEGTTCKAILCWESLHEWLRLAV 942

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|255543441\|ref\|XP_002512783.1\| Transportin-3, putative [Ricinus communis] gi\|223547794\|gb\|EEF49286.1\| Transportin-3, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|449501328\|ref\|XP_004161339.1\| PREDICTED: transportin-3-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|224131372\|ref\|XP_002321068.1\| predicted protein [Populus trichocarpa] gi\|222861841\|gb\|EEE99383.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|356561051\|ref\|XP_003548799.1\| PREDICTED: transportin-3-like [Glycine max]	Back alignment and taxonomy information

>gi\|449455816\|ref\|XP_004145646.1\| PREDICTED: LOW QUALITY PROTEIN: transportin-3-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|18391456\|ref\|NP_563920.1\| exportin 1-like protein domain-containing protein [Arabidopsis thaliana] gi\|332190829\|gb\|AEE28950.1\| exportin 1-like protein domain-containing protein [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|297849682\|ref\|XP_002892722.1\| hypothetical protein ARALYDRAFT_471447 [Arabidopsis lyrata subsp. lyrata] gi\|297338564\|gb\|EFH68981.1\| hypothetical protein ARALYDRAFT_471447 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|15215746\|gb\|AAK91418.1\| At1g12930/F13K23_14 [Arabidopsis thaliana] gi\|27363440\|gb\|AAO11639.1\| At1g12930/F13K23_14 [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|8698739\|gb\|AAF78497.1\|AC012187_17 Contains similarity to transportin-SR from Homo sapiens gb\|AF145029. ESTs gb\|T46556, gb\|AI993189, gb\|T45501, gb\|AA394463 come from this gene [Arabidopsis thaliana]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		962
TAIR\|locus:2010381		1005	AT1G12930 "AT1G12930" [Arabido	0.963	0.922	0.661	0.0
UNIPROTKB\|F1SMQ0		921	TNPO3 "Uncharacterized protein	0.410	0.428	0.257	5e-34
TAIR\|locus:2154159		958	MOS14 "AT5G62600" [Arabidopsis	0.538	0.540	0.255	9.1e-33
UNIPROTKB\|C9J7E5		957	TNPO3 "Uncharacterized protein	0.819	0.823	0.231	1.5e-32
ZFIN\|ZDB-GENE-040426-708		923	tnpo3 "transportin 3" [Danio r	0.405	0.422	0.256	8.6e-31
MGI\|MGI:1196412		923	Tnpo3 "transportin 3" [Mus mus	0.410	0.427	0.257	1.1e-30
UNIPROTKB\|Q9Y5L0		923	TNPO3 "Transportin-3" [Homo sa	0.410	0.427	0.257	2.4e-30
UNIPROTKB\|A5D7C4		923	TNPO3 "TNPO3 protein" [Bos tau	0.410	0.427	0.257	6.3e-30
RGD\|1308938		929	Tnpo3 "transportin 3" [Rattus	0.410	0.425	0.257	1.4e-29
UNIPROTKB\|A7YWD2		963	IPO13 "Importin-13" [Bos tauru	0.747	0.746	0.213	2.7e-29

TAIR\|locus:2010381 AT1G12930 "AT1G12930" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 3149 (1113.6 bits), Expect = 0., P = 0.
 Identities = 622/940 (66%), Positives = 758/940 (80%)

Query:     3 MDLQIKVAQAVHVLNHDTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEV 62
             M+LQ KVA+A+HVLNHD ES NRVAANQWLVQFQ T AAW+++TS+LTS   S    F++
Sbjct:     1 MELQRKVAEAIHVLNHDPESSNRVAANQWLVQFQLTPAAWDVSTSLLTSPIVSL---FDL 57

Query:    63 EFFAAQILKRKIQNEGYYLQSAAKDALLNALLVAAKRFSSGPPQLLTQICLALSALILRA 122
             +FFAAQIL+RKIQNE   LQS AKDALLNALL+AAKR+SSG PQLLTQICLALSAL+L +
Sbjct:    58 QFFAAQILRRKIQNEASNLQSTAKDALLNALLLAAKRYSSGVPQLLTQICLALSALLLHS 117

Query:   123 VEHGKPIEKLFYSLQNLQSQDNGNMAVLEMLTVLPEEVIDSQASDCNISSAHRSQYGQEL 182
               + KP +KL ++LQNLQ+ D+GN+ +LE+LTVLPEE+ D++        +H S   QEL
Sbjct:   118 DPYSKPFDKLMFALQNLQAHDDGNVVLLELLTVLPEEISDTR------HFSHHSDLRQEL 171

Query:   183 LSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQGSLAAHPL 242
             LSHT MV++FL+QQS+ +F    P+  HD NRKILRCLLSWVRAGCF+EI QG++ +HPL
Sbjct:   172 LSHTSMVLDFLLQQSENQFVS--PLYPHDNNRKILRCLLSWVRAGCFSEIPQGAVPSHPL 229

Query:   243 LNFVFNSLQVQSSFDVAIEVLVELVGRHEGLPQALLCRVPFXXXXXXXXXXTDGDEKVIG 302
             LN+VFN+LQ  ++FD+AIEVLVELV RHE LPQ LL +V F           + D K+I 
Sbjct:   230 LNYVFNALQ-GTTFDLAIEVLVELVTRHEDLPQVLLYKVQFLRDTLLKPALINADLKIIS 288

Query:   303 GLACLMSEIGQAAPSLIVEASPEALALADALLSCVAFPSEDWEIADSTLQFWSTLASYIL 362
             GLACLMSEIGQAAP LIVEAS EAL L DA+LSCV FPSEDWEIADST+QFWST A+YIL
Sbjct:   289 GLACLMSEIGQAAPCLIVEASSEALILTDAILSCVTFPSEDWEIADSTVQFWSTFATYIL 348

Query:   363 GLDASIAKNKKHVEDMFFSVFSALLDALLLRAQVDESSFNDDGM-VDLPDGLVQFRMNLV 421
              L  +   ++  V+D F  VFSAL+DAL+LRAQVDE + +D+   +DLPDGL+ FR NL+
Sbjct:   349 SLGGNRQNDRTRVKDTFLPVFSALVDALVLRAQVDEFTSSDESPGLDLPDGLLHFRNNLL 408

Query:   422 ELLVDICQLLRSATFIQKVFFGSWGSANVPIPWKEVETKLFALNVVSEVVLQEGQAFDFS 481
             ELLVDICQLL   TF+ K+FFG   S++V +P +E+E KLFAL  VSE++LQEG+AFDF+
Sbjct:   409 ELLVDICQLLHPTTFVSKLFFGGVPSSSVSMPLREIEAKLFALTAVSEIILQEGEAFDFA 468

Query:   482 VIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISAFQTNARPLLLFLAAGISEA 541
             +IMQLV+  S   S ELKGF+ +VYRSLADV+GSYS+WIS F +NARPLLLFLA GISE 
Sbjct:   469 LIMQLVSAFSVRPSSELKGFISVVYRSLADVVGSYSRWISVFPSNARPLLLFLAGGISEP 528

Query:   542 VSSNACASALRKICEDASALIDEPSNLEILMWIGEALEKRHLPLEDEEEVVGAISLILGS 601
             + S+ACASALRKICEDA A+I E SNL+ILMWIGE LE+  L LEDEEEV+ AI++ILGS
Sbjct:   529 ICSHACASALRKICEDAPAVIQETSNLDILMWIGECLEQWDLTLEDEEEVITAITVILGS 588

Query:   602 VSNKELKNNLLARLLSSSYEAIGKLIDGDNNHSLIHNPATYTQILSSATRGLYRMGTVFS 661
             V+NKEL+N LL +LLSSSY  + KL+D D   S   +PATYT++LSS TRGLYR+GTVFS
Sbjct:   589 VANKELQNKLLTQLLSSSYGVLSKLVDEDAESSGRQSPATYTRMLSSVTRGLYRIGTVFS 648

Query:   662 HLPVPLPTNPAGDDPIFALLRVFWPMLEKLFRSEHMENGNLSTAACRALSLAIQSSGQHF 721
             HL   LP+ P  D PI +LL VFWP+LEKLFRSEHME+G+L+ AACRALS+A+QSSG+HF
Sbjct:   649 HLATSLPSVPVADGPILSLLTVFWPILEKLFRSEHMESGSLAAAACRALSVAVQSSGEHF 708

Query:   722 VTLLPQVLDCLSTNFVSFQNHECYIRTASVVIEEFGHKDEYGPLFVTTFERFSQAASVRA 781
             + LLP VLDCLS NF+SFQ+ ECYIRTA V+ EEF HK+EYG LF+TTFERF+QA+S+  
Sbjct:   709 MLLLPSVLDCLSRNFLSFQSQECYIRTACVIAEEFCHKEEYGSLFITTFERFTQASSLMG 768

Query:   782 LNSSYICDQEPDLVEAYTNFASTFVRTSRKEVLAASGALLEVSFQKAAICCTAMHRGAAL 841
             +NSSYICDQEPDLVEAY NFAS  +R+  KE+L  SG LLE+SF KAAICCTAMHRGAAL
Sbjct:   769 INSSYICDQEPDLVEAYVNFASALIRSCHKELLGTSGTLLEISFHKAAICCTAMHRGAAL 828

Query:   842 AAMSYLSCFLEECLASLLGYTTSIPEGSFNAMAIQVISHSGEGLVSNVVYALLGVSAMSR 901
             AAMSYLS FLE  L+S++    SI +GSF+ +++QV+SH GEGL+SN+VYALLGV+AMSR
Sbjct:   829 AAMSYLSGFLEVSLSSMIETVNSISDGSFSVVSVQVVSHCGEGLLSNLVYALLGVAAMSR 888

Query:   902 VHKCATILQQLAAICSISERTSGKAILSWESLQGWLHSAV 941
             VHKC+TILQQLAAICS+ ERTS K +L W+SLQGWL+SAV
Sbjct:   889 VHKCSTILQQLAAICSLCERTSWKGMLCWKSLQGWLNSAV 928

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB\|F1SMQ0 TNPO3 "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

TAIR\|locus:2154159 MOS14 "AT5G62600" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

UNIPROTKB\|C9J7E5 TNPO3 "Uncharacterized protein" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-040426-708 tnpo3 "transportin 3" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

MGI\|MGI:1196412 Tnpo3 "transportin 3" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

UNIPROTKB\|Q9Y5L0 TNPO3 "Transportin-3" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|A5D7C4 TNPO3 "TNPO3 protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

RGD\|1308938 Tnpo3 "transportin 3" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

UNIPROTKB\|A7YWD2 IPO13 "Importin-13" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	fgenesh4_pm.C_LG_XIV000378	hypothetical protein (1008 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
		Sorry, there are no predicted associations at the current settings.

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		962
pfam08389		147	pfam08389, Xpo1, Exportin 1-like protein	3e-17
smart00913		67	smart00913, IBN_N, Importin-beta N-terminal domain	5e-04

>gnl\|CDD\|219817 pfam08389, Xpo1, Exportin 1-like protein	Back alignment and domain information

 Score = 79.2 bits (196), Expect = 3e-17
 Identities = 42/161 (26%), Positives = 67/161 (41%), Gaps = 15/161 (9%)

Query: 104 PPQLLTQICLALSALILRAVEHGKPIEKLFYSL-QNLQSQDNGNMAVLEMLTVLPEEVID 162
           P  +  ++ LAL+ L  +  E        F  L   L S  +G   +L +L VLPEE+ D
Sbjct: 1   PKFIRNKLALALAELAKQ--EWPSNWPTFFPDLVSLLSSSPSGCELLLRILKVLPEEIFD 58

Query: 163 SQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLS 222
              +   ++   R++    L S  P ++E L+Q  +        +         L+CL S
Sbjct: 59  FSRTP--LTQQRRNRLKDLLRSQMPQILELLLQILENSVSAHSEL-----LSATLKCLGS 111

Query: 223 WVRAGCFTEISQGSLAAHPLLNFVFNSLQVQSSFDVAIEVL 263
           W+       I  G +   PLLN +F  L      + A+E L
Sbjct: 112 WLS-----WIPIGLILNDPLLNLLFQLLSDPDLREAAVECL 147

The sequences featured in this family are similar to a region close to the N-terminus of yeast exportin 1 (Xpo1, Crm1). This region is found just C-terminal to an importin-beta N-terminal domain (pfam03810) in many members of this family. Exportin 1 is a nuclear export receptor that interacts with leucine-rich nuclear export signal (NES) sequences, and Ran-GTP, and is involved in translocation of proteins out of the nucleus. Length = 147

>gnl\|CDD\|197981 smart00913, IBN_N, Importin-beta N-terminal domain	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		962
KOG2022		982	consensus Nuclear transport receptor LGL2 (importi	100.0
KOG2081		559	consensus Nuclear transport regulator [Intracellul	100.0
KOG2021		980	consensus Nuclear mRNA export factor receptor LOS1	100.0
COG5101		1053	CRM1 Importin beta-related nuclear transport recep	100.0
KOG2023		885	consensus Nuclear transport receptor Karyopherin-b	100.0
KOG2171		1075	consensus Karyopherin (importin) beta 3 [Nuclear s	100.0
KOG2020		1041	consensus Nuclear transport receptor CRM1/MSN5 (im	100.0
KOG1241		859	consensus Karyopherin (importin) beta 1 [Nuclear s	99.93
KOG1991		1010	consensus Nuclear transport receptor RANBP7/RANBP8	99.83
COG5215		858	KAP95 Karyopherin (importin) beta [Intracellular t	99.83
KOG1992		960	consensus Nuclear export receptor CSE1/CAS (import	99.64
PF08389		148	Xpo1: Exportin 1-like protein; InterPro: IPR013598	99.63
KOG1410		1082	consensus Nuclear transport receptor RanBP16 (impo	99.52
KOG2274		1005	consensus Predicted importin 9 [Intracellular traf	99.48
COG5656		970	SXM1 Importin, protein involved in nuclear import	99.29
PF08767		319	CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1	99.26
KOG1993		978	consensus Nuclear transport receptor KAP120 (impor	98.71
PF03810		77	IBN_N: Importin-beta N-terminal domain; InterPro:	98.66
KOG2171		1075	consensus Karyopherin (importin) beta 3 [Nuclear s	98.58
KOG2023		885	consensus Nuclear transport receptor Karyopherin-b	97.78
KOG0915		1702	consensus Uncharacterized conserved protein [Funct	97.03
PF08506		370	Cse1: Cse1; InterPro: IPR013713 The exchange of ma	96.52
COG5657		947	CSE1 CAS/CSE protein involved in chromosome segreg	96.41
COG5215		858	KAP95 Karyopherin (importin) beta [Intracellular t	96.34
KOG0212		675	consensus Uncharacterized conserved protein [Funct	96.22
PF03378		435	CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: I	94.77
KOG1824		1233	consensus TATA-binding protein-interacting protein	94.47
PF03378		435	CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: I	94.06
KOG1824		1233	consensus TATA-binding protein-interacting protein	93.52
PF02985		31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	90.42
KOG1241		859	consensus Karyopherin (importin) beta 1 [Nuclear s	90.16
PF08767		319	CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1	89.22
PRK09687		280	putative lyase; Provisional	88.43
KOG1242		569	consensus Protein containing adaptin N-terminal re	87.31
PF12348		228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	85.98
PF12755		97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	85.37
COG5101		1053	CRM1 Importin beta-related nuclear transport recep	84.03
PF01602		526	Adaptin_N: Adaptin N terminal region; InterPro: IP	83.48
PTZ00429		746	beta-adaptin; Provisional	83.42
PF12460		415	MMS19_C: RNAPII transcription regulator C-terminal	83.27
KOG0213		1172	consensus Splicing factor 3b, subunit 1 [RNA proce	83.13
KOG0166		514	consensus Karyopherin (importin) alpha [Intracellu	83.05
KOG1991		1010	consensus Nuclear transport receptor RANBP7/RANBP8	83.02
PF12755		97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	81.4
PF08167		165	RIX1: rRNA processing/ribosome biogenesis	80.47
PF12348		228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	80.3

>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

Probab=100.00  E-value=4.3e-97  Score=818.76  Aligned_cols=881  Identities=18%  Similarity=0.269  Sum_probs=694.3

Q ss_pred             CCchHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcChHHHHHHHHhhccCCCCCCcchhHHHHHhHHHHHHHhcCCCC
Q 002126            1 MQMDLQIKVAQAVHVLNHDTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYY   80 (962)
Q Consensus         1 ~~~~~~~~v~~ai~~ly~~~d~~~~~~A~~~L~~~Q~s~~aW~~~~~LL~~~~~~~~~~~~v~ffaA~tL~~ki~~~~~~   80 (962)
                      |+.+.+++|+++|..||++++++.++.+++||++.|+||+||+++++||+.++.     .++|||||.||+.||+++|++
T Consensus         1 md~~~Ia~v~~~v~~lY~~~~~~~~a~~qk~Lq~aq~S~Q~w~~s~~llQ~~k~-----~evqyFGAltL~~ki~~~~e~   75 (982)
T KOG2022|consen    1 MDSDLIATVEELVTTLYSHRNHENDAITQKWLQDAQCSQQGWHFSWQLLQPDKS-----SEVQYFGALTLHDKINTRWEE   75 (982)
T ss_pred             CCchHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhHHHHHHHHHHcCCCch-----hHHHHHhHHHHHHHHHhhhcc
Confidence            788889999999999999999999999999999999999999999999998774     588999999999999999999


Q ss_pred             CChHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhc--cCCchHHHHHHHhhcccCC----CcchHHHHHHHh
Q 002126           81 LQSAAKDALLNALLVAAKRFSSGPPQLLTQICLALSALILRAV--EHGKPIEKLFYSLQNLQSQ----DNGNMAVLEMLT  154 (962)
Q Consensus        81 l~~e~~~~Lr~~Ll~~l~~~~~~~~~v~~kL~~aLa~l~~~~~--~W~~~i~~li~~~~~~~~~----~~~~~~lL~iL~  154 (962)
                      +|++++..|+.+++..+.+++.||+.|.||+|.+||.+.+++.  .||+++.+++..++.....    ...+.++|+.|+
T Consensus        76 ~~~~~~~qL~~klf~~l~~~~g~~~lVl~kl~~sLasl~l~~~~d~Wp~ai~~vi~~l~~q~~p~v~ad~n~~~~Le~Ls  155 (982)
T KOG2022|consen   76 CPANEAVQLKLKLFLILSRFAGGPKLVLNKLCASLASLILYMVPDLWPTAIQDVIPTLQGQASPLVLADINCEILLEVLS  155 (982)
T ss_pred             CChhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHccccCCchHHHHHHHHhcccCccccchhhHHHHHHHhc
Confidence            9999999999999999999999999999999999999999986  5999999999999863211    134578999999


Q ss_pred             hcccccccccccccCCCHHHHHHHHHHHHhhhhHHHHHHHHhHhhccCCCCCcchhhhHHHHHHHHHHHHHhcccccccc
Q 002126          155 VLPEEVIDSQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQ  234 (962)
Q Consensus       155 ~l~EE~~~~~~~~~~l~~~~r~~~~~~l~~~~~~v~~~l~~~l~~~~~~~~~~~~~~~~~~~l~cl~sWi~~~~~~~~~~  234 (962)
                      .+|+|....   +  ++..+|..++.+|......++.++..++....+...+.-+-..+..+++|+.+|++|.   ..+.
T Consensus       156 ~~p~e~q~~---~--l~~t~~~~l~~eLak~~~~v~~l~e~vlr~~~n~t~s~~~~i~~~~a~dCv~~Wi~~i---~~~~  227 (982)
T KOG2022|consen  156 FMPAEFQHV---T--LPLTRRSVLRGELAKFSENVISLLEVVLRGGSNSTSSLINLIFKQAAVDCVEQWIRYI---SLTG  227 (982)
T ss_pred             cCcHhhhhc---c--chhHHHHHHHHHHHHHHHHHhHHHHHHHhccccccHHHHHHHhhhHHHHHHHHHHHHh---cccc
Confidence            999998643   2  7788999999999999999999888887765432100001146688999999999975   2232


Q ss_pred             hhhhhcchHHHHHHhcCC--CCcHHHHHHHH---------------HHHHhcCC--ChhH---HHHhhhhh-hHHhhh-h
Q 002126          235 GSLAAHPLLNFVFNSLQV--QSSFDVAIEVL---------------VELVGRHE--GLPQ---ALLCRVPF-LKELLL-L  290 (962)
Q Consensus       235 ~~~~~~~ll~~~~~~L~~--~~~~~~a~~~l---------------~eil~~~~--~~~~---~l~~~~~~-l~~~~~-~  290 (962)
                      .  ....++..++..+..  ....+++-+|+               +..+...+  .|.+   .|++-+.+ +++.-. .
T Consensus       228 ~--~c~~i~~~ll~~l~~s~~~~~~a~~~cmt~~~n~la~~~l~~~v~~i~q~d~~~y~nti~~li~i~~~~l~e~~~~~  305 (982)
T KOG2022|consen  228 M--DCDQITQVLLDVLGQSTEGSYEAAEKCMTIFGNVLADDTLLASVNDIIQPDCEFYRNTITLLISICLGILQEVSGKI  305 (982)
T ss_pred             c--cHHHHHHHHHHHHhhhccccccchhhhcccchhhhccchHHHHHHHhcChHHHhccchHHHHHHHHHHHHHHHHHHH
Confidence            2  233455555555541  11122222222               11111111  1222   23333333 222111 0


Q ss_pred             hhhccCc--HhHHhhHHHHHHHHhHhhhHHHHhc------ChhHHHHHHHHHhcccCCCCCchhh----hhhHHHHHHHH
Q 002126          291 PALTDGD--EKVIGGLACLMSEIGQAAPSLIVEA------SPEALALADALLSCVAFPSEDWEIA----DSTLQFWSTLA  358 (962)
Q Consensus       291 ~~~~~~d--~d~~~~l~~l~~~~~e~~~~~l~~~------~~~~~~ll~~ll~~~~~p~~d~~v~----~~t~~FW~~l~  358 (962)
                      ....+.|  +|....++++++..+|++.+.+.++      +..+.++++.|+.|+++||+ |++.    ..|+.|||+|+
T Consensus       306 ~~~e~~d~~~e~i~~~~~i~v~~~En~l~~lid~~~~g~~~e~v~rlv~vll~~t~~PG~-ypveE~~S~~~l~FW~tL~  384 (982)
T KOG2022|consen  306 QEEENADASEEEIVTFLAITVSSVENHLPTLIDCAAQGEQSELVIRLVQVLLVLTNFPGQ-YPVEEIVSDRTLIFWYTLQ  384 (982)
T ss_pred             HHHhCCCchhHHHHHHHHHHHHHHhcccHHHHHHHhhcchHHHHHHHHHHHHHHhCCCCC-ccHHHHHhHHHHHHHHHHH
Confidence            2334555  7778899999999999999998764      23467999999999999995 6654    47999999999


Q ss_pred             HHHhhcchhhhhhhhhhhhhhH-HHHHHHHHHHHHHhccCCC-CCCCCCCCCCCchHHHHHHHHHHHHHHHHHhcCcHH-
Q 002126          359 SYILGLDASIAKNKKHVEDMFF-SVFSALLDALLLRAQVDES-SFNDDGMVDLPDGLVQFRMNLVELLVDICQLLRSAT-  435 (962)
Q Consensus       359 e~l~~~~~~~~~~~~~~~~~~~-~~~~~L~~~l~~k~~~p~~-~~~~~~~~d~~d~f~~fR~~~~d~l~~~~~il~~~~-  435 (962)
                      |++..+..++.   +.....|+ |+|.+|++++++|+.+|.+ .|. .|..|++|.|++||+|++|+++++|.++|+.. 
T Consensus       385 dei~~~~~e~~---~~~~~i~~~qIy~qlvei~l~K~~~Ps~e~~~-~W~S~s~e~F~~YR~diSD~~~~~Y~ilgd~ll  460 (982)
T KOG2022|consen  385 DEIMQTINETQ---QIKKQILSQQIYAQLVEILLKKLALPSKEIWL-SWSSDSREQFESYRKDISDLLMSSYSILGDGLL  460 (982)
T ss_pred             HHHHHhhhccC---CcchhHHHHHHHHHHHHHHHHHhcCCCHHHhc-cCCcchHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence            99987655432   22334555 9999999999999999988 455 69999999999999999999999999999642 


Q ss_pred             -HHHHHHHhhhcCCC-CCCCchhhhHHHHHHHhhhhccccCCCccchhHHHHHHHHhccCchhhhhhHHHHHHHHHHHHH
Q 002126          436 -FIQKVFFGSWGSAN-VPIPWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVI  513 (962)
Q Consensus       436 -~l~~~~~~l~~~~~-~~~~W~~~Ea~Lf~l~~iae~i~~~~~~~~l~~i~~~l~~l~~~~~~~~~~~~~v~~~t~~~~i  513 (962)
                       ++.+.++++...+. .+.+|++.|+|+|++.++++.+..+++    +.+..++...++.+....+  +.+. .|.+.+|
T Consensus       461 ~~L~~~l~q~~aa~d~~p~s~~~tEaci~~~~sva~~~~~t~~----~~i~rl~~~~asik~S~~n--~ql~-~Tss~~i  533 (982)
T KOG2022|consen  461 DFLIDTLEQALAAGDEDPDSLNRTEACIFQFQSVAEYLGETES----TWIPRLFETSASIKLSAPN--PQLL-STSSDLI  533 (982)
T ss_pred             HHHHHHHHHhhhccCCCchHHHHHHHHHHHHHHHHhhcCcchh----HHHHHHHHhccccccccCC--hhHH-HHHHHHH
Confidence             44555555544443 456799999999999999999986554    5666666655433221000  1133 3557999


Q ss_pred             HhhHHHHHhChhchHHHHHHHHHhcccCchhHHHHHHHHHHHHHhhcccCCCccHHHHHHH-HHHHHhcCCChhhHHHHH
Q 002126          514 GSYSKWISAFQTNARPLLLFLAAGISEAVSSNACASALRKICEDASALIDEPSNLEILMWI-GEALEKRHLPLEDEEEVV  592 (962)
Q Consensus       514 g~ys~wl~~~p~~L~~vL~~l~~~l~~~~~~~~Aa~al~~lc~~c~~~l~~p~~~~~l~~~-~~~l~~~~l~~~~~~~l~  592 (962)
                      |.|+.|+..||.||++.++.++.++++++....|..++++||++|+.+|. | +.+.+... ++.+.....++.++.+++
T Consensus       534 gs~s~~l~e~P~~ln~sl~~L~~~Lh~sk~s~q~i~tl~tlC~~C~~~L~-p-y~d~~~a~~~e~l~~~~~~~S~~~klm  611 (982)
T KOG2022|consen  534 GSLSNWLGEHPMYLNPSLPLLFQGLHNSKESEQAISTLKTLCETCPESLD-P-YADQFSAVCYEVLNKSNAKDSDRLKLM  611 (982)
T ss_pred             HHHHHHHhcCCcccCchHHHHHHHhcCchHHHHHHHHHHHHHHhhhhhCc-h-HHHHHHHHHHHHhcccccCchHHHHHH
Confidence            99999999999999999999999999999888889999999999999995 3 66665555 555566788899999999


Q ss_pred             HHHHHHhccCCchHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCchhhHHHhHHHHHHHHhhhhhcccccccCCC---
Q 002126          593 GAISLILGSVSNKELKNNLLARLLSSSYEAIGKLIDGDNNHSLIHNPATYTQILSSATRGLYRMGTVFSHLPVPLPT---  669 (962)
Q Consensus       593 eai~~vi~~lp~~e~~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~i~~~l~~~~~~---  669 (962)
                      .+||+|++.+.++| +.+++.++++|++++++.++....+     +++.   .+. .+-.+.+++++|..+..+.+.   
T Consensus       612 ~sIGyvls~~~pEe-~~kyl~~lin~il~qle~~l~~~i~-----~~e~---~l~-~~~~l~~iS~LftSL~~~~~~~d~  681 (982)
T KOG2022|consen  612 KSIGYVLSRLKPEE-IPKYLMKLINPILSQLEINLAPGID-----DQEN---HLR-IAFQLNTISALFTSLINKKDIIDT  681 (982)
T ss_pred             HHHHHHHHhccHHh-HHHHHHHHHHHHHHHHHHhhcCCCC-----CHHH---HHH-HHHHHHHHHHHHhccCCCCccccc
Confidence            99999999999777 6899999999999999999776533     2221   122 234467777888877654321   


Q ss_pred             CCC-------CCchHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhh-HhhHHHHHHHHHHhhhhhcC
Q 002126          670 NPA-------GDDPIFALLRVFWPMLEKLFRSEHMENGNLSTAACRALSLAIQSSGQHF-VTLLPQVLDCLSTNFVSFQN  741 (962)
Q Consensus       670 ~~~-------~~~p~~~~~~~i~~~l~~i~~~~~~~~~~v~e~~c~~~~~~~~~l~~~~-~p~l~~~~~~l~~~f~~~~~  741 (962)
                      +..       +..|++.++++++|+++.++. +|.++.+++|++|.+++++++++++.+ .|++|.++.++.. |... +
T Consensus       682 d~~~~~~~~~qq~~il~v~~k~i~~~~kv~s-~~~~~s~vve~~C~i~~~~v~~~~~sF~~p~l~~l~~Fi~r-~~~~-~  758 (982)
T KOG2022|consen  682 DQPEQREEPFQQFPILQVLQKAIPVFEKVLS-MWLGLSDVVEASCIIMVKGVRSLLTSFPEPMLPSLCPFIVR-FLTS-C  758 (982)
T ss_pred             cchhhhccccccCCHHHHHHHHHHHHHHHHH-HHhcchhHHHHHHHHHHhccccccccchhhhHHHHHHHHHH-hccc-h
Confidence            000       113788899999999999999 899999999999999999999998887 8999999999987 7654 5


Q ss_pred             cchHHHHHHHHHHHhcCCCCccchHHHHHHHHhhhHHHHHhhcCCCCCCCCchHHHHHHHHHHHHHhhhHHHHhhchhch
Q 002126          742 HECYIRTASVVIEEFGHKDEYGPLFVTTFERFSQAASVRALNSSYICDQEPDLVEAYTNFASTFVRTSRKEVLAASGALL  821 (962)
Q Consensus       742 ~~~~L~l~~~lv~~~g~~~~~~~~l~~l~~~l~~~~~~~~l~~~~~~~~~pD~~~~~f~l~~~~l~~~p~~~l~~~~~~l  821 (962)
                      ...-+.+...++..+..++.+.+.+...+..+.+.+ +..+.+. .+.++||+.+.+|+|+..++++.|+.+.++...+-
T Consensus       759 ~a~tl~l~~~~l~~~~~~~~~~~lv~~~~~~~~q~s-l~lf~~~-~f~n~~Di~~~~~~~v~~ilkk~P~~~~~~~~~~t  836 (982)
T KOG2022|consen  759 LAVTLSLIAACLLAKSTVEQCKPLVGQDMANAFQQS-LLLFEQH-PFSNQPDIYLQLIGFVRQILKKIPKFLEPSMLAFT  836 (982)
T ss_pred             HHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHH-HHHHhcc-CCCCCchHHHHHHHHHHHHHHhCcCccccchHHHH
Confidence            555677888888888777788888888777666665 5556553 47999999999999999999999999998654454


Q ss_pred             HHHHHHHHHhhccCchhHHHHHHHHHHHHHhhhhhhccCCCCCCCCccHHHHHHHHHHhccHHHHHHHHHHhcCCCcccc
Q 002126          822 EVSFQKAAICCTAMHRGAALAAMSYLSCFLEECLASLLGYTTSIPEGSFNAMAIQVISHSGEGLVSNVVYALLGVSAMSR  901 (962)
Q Consensus       822 ~~~l~~~l~~l~~~e~~~~~a~~~fl~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~Lv~~ll~~~~g~~~rs~  901 (962)
                      ..++.+++..++.+|+.++|++++||+.|+...++            ++.+.+.+++.+.|+.|+.++|+|+||.+|||.
T Consensus       837 s~i~~~a~~ll~~pE~~~i~aa~qF~t~~~~~~~s------------~~~~tv~~~V~~~G~~Li~~im~~vgg~~~RS~  904 (982)
T KOG2022|consen  837 SLILICAFILLNSPEPTTIRAASQFLTALATYATS------------HDLVTVTSVVAEIGPILIYAIMRGVGGEASRST  904 (982)
T ss_pred             HHHHHHHHHhcCCCccHHHHHHHHHHHHHHhhccc------------chhHHHHHHHHhcchHHHHHHHHHhcCcCccch
Confidence            55666999999999999999999999998876543            235789999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHHhhhhcccchhhccchhHHHHHHHHHHhhhhhhcCCC
Q 002126          902 VHKCATILQQLAAICSISERTSGKAILSWESLQGWLHSAVSLFLILIGAG  951 (962)
Q Consensus       902 ~~~~~~iL~~l~~~~~~~~~~~~~~~~~~~~~~~Wl~~~l~~~~~~~~~~  951 (962)
                      +|.++|||++|+             ++|+..++.|+.++| +.|++|..|
T Consensus       905 ld~~aDIL~al~-------------~k~~se~r~wl~~~l-q~~gfPs~~  940 (982)
T KOG2022|consen  905 LDALADILLALN-------------AKFFSETRTWLKAVL-QIPGFPSAG  940 (982)
T ss_pred             hHHHHHHHHHHH-------------HhhhHHHHHHHHHHh-cCCCCCccc
Confidence            999999999999             899999999999999 778887555

>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]	Back alignment and domain information

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG2020 consensus Nuclear transport receptor CRM1/MSN5 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]	Back alignment and domain information

>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane	Back alignment and domain information

>KOG1410 consensus Nuclear transport receptor RanBP16 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]	Back alignment and domain information

>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES)	Back alignment and domain information

>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF03810 IBN_N: Importin-beta N-terminal domain; InterPro: IPR001494 Karyopherins are a group of proteins involved in transporting molecules through the pores of the nuclear envelope	Back alignment and domain information

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG0915 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane	Back alignment and domain information

>COG5657 CSE1 CAS/CSE protein involved in chromosome segregation [Cell division and chromosome partitioning]	Back alignment and domain information

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]	Back alignment and domain information

>KOG0212 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []	Back alignment and domain information

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]	Back alignment and domain information

>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []	Back alignment and domain information

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]	Back alignment and domain information

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []	Back alignment and domain information

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES)	Back alignment and domain information

>PRK09687 putative lyase; Provisional	Back alignment and domain information

>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]	Back alignment and domain information

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	Back alignment and domain information

>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]	Back alignment and domain information

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment	Back alignment and domain information

>PTZ00429 beta-adaptin; Provisional	Back alignment and domain information

>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins	Back alignment and domain information

>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]	Back alignment and domain information

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	Back alignment and domain information

>PF08167 RIX1: rRNA processing/ribosome biogenesis	Back alignment and domain information

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		962
2xwu_B		963	Crystal Structure Of Importin 13 - Ubc9 Complex Len		4e-18
2x19_B		963	Crystal Structure Of Importin13 - Rangtp Complex Le		2e-14
2x1g_F		971	Crystal Structure Of Importin13 - Mago-Y14 Complex		8e-09

>pdb|2XWU|B Chain B, Crystal Structure Of Importin 13 - Ubc9 Complex Length = 963

Back alignment and structure

Iteration: 1

Score = 90.5 bits (223), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 193/951 (20%), Positives = 378/951 (39%), Gaps = 123/951 (12%) Query: 9 VAQAVHVLNHDTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQ 68 V +A+H L +D N+ A +WL+Q Q + AW + +L D+ E+++F A Sbjct: 26 VEKALHQLYYDPNIENKNLAQKWLMQAQVSPQAWHFSWQLLQPDKVP-----EIQYFGAS 80 Query: 69 ILKRKIQNEGYYLQSAAKDALLNALLVAAKRFSSGPPQLLTQICLALSALILRAVEHGKP 128 L KI + + ++L L RF+SG +LT++C+AL++L L + P Sbjct: 81 ALHIKISRYWSDIPTDQYESLKAQLFTQITRFASGSKIVLTRLCVALASLALSMMPDAWP 140 Query: 129 -----IEKLFYSLQNLQSQDNGNMAVLEMLTVLPEEVIDSQASDCNISSAHRSQYGQELL 183 + +LF + + +A+LE+LTVLPEE S+ R+ E Sbjct: 141 CAVADMVRLFQAEDSPVDGQGRCLALLELLTVLPEEFQTSRLPQYR-KGLVRTSLAVECG 199 Query: 184 SHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQGSLAAHPLL 243 + P++ + L Q S +K+L+C SWV+ E+ A L+ Sbjct: 200 AVFPLLEQLLQQPSSPSC----------VRQKVLKCFSSWVQ----LEVPLQDCEA--LI 243 Query: 244 NFVFNSLQVQSSFDVAIEVLVELVGRHEG--LPQALLCRVPFX--XXXXXXXXXTDGDEK 299 F +LQ FD ++E +V + + + LL +P +GD + Sbjct: 244 QAAFAALQDSELFDSSVEAIVNAISQPDAQRYVNTLLKLIPLVLGLQEQLRQAVQNGDME 303 Query: 300 VIGGLACLMSEIGQAAPSLI---VEASPEALALADALLSCVAFPSE---DWEIADSTLQF 353 G+ + +G+ + VE LAL + ++ C P + + TL F Sbjct: 304 TSHGICRIAVALGENHSRALLDQVEHWQSFLALVNMIMFCTGIPGHYPVNETTSSLTLTF 363 Query: 354 WSTLASYILGLDASIAKNKKHVEDMFFSVFSALLDALLLRAQVDESSFNDDGMVDLPDGL 413 W TL IL + A+ + + ++ V+ L+D LL +AQ D + Sbjct: 364 WYTLQDDILSFE---AEKQAVYQQVYRPVYFQLVDVLLHKAQFPSDEEYGFWSSDEKEQF 420 Query: 414 VQFRMNLVELLVDICQLLRSATFIQKVF--FGS-WGSANVPIPWKEVETKLFALNVVSEV 470 +R+++ + L+ + ++L A + ++ G S+ P W+ E L+ ++E Sbjct: 421 RIYRVDISDTLMYVYEML-GAELLSNLYDKLGRLLTSSEEPYSWQHTEALLYGFQSIAET 479 Query: 471 VLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYR------SLAD----VIGSYSKWI 520 + + S+ + G + ++ R LAD IG+ S+W+ Sbjct: 480 I-------------------DVNYSDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWL 520 Query: 521 SAFQTNARPLLLFLAAGISEAVSSNACASALRKICEDASALIDEPSNLEILMWIGEALEK 580 + +L + + S + S L+KIC + + P I+ + L K Sbjct: 521 ADHPVMINSVLPLVLHALGNPELSVSSVSTLKKICRECKYDL-PPYAANIVAVSQDVLMK 579 Query: 581 RHLPLEDEEEVVGAISLILGSVSNKELKNNLLARLLSSSYEAIGKLID----GDNNHSLI 636 + ++ A+ +L ++ +E+ NL + L+S + + KL + N +++ Sbjct: 580 QIHKTSQCMWLMQALGFLLSALQVEEILKNLHS-LISPYIQQLEKLAEEIPNPSNKLAIV 638 Query: 637 HNPATYTQILSSATRGLY---RMGTVFSHLPVPLPTNPAGDDPIFALLRVFWPMLEKLFR 693 H + + ++ + G LPV P G +P+ +L+ + +++K+ Sbjct: 639 HILGLLSNLFTTLDISHHEDDHEGPELRKLPV-----PQGPNPVVVVLQQVFQLIQKVL- 692 Query: 694 SEHMENGNLSTAACRALSLAIQSSGQHFVTLLPQVLDCLSTNFVSFQNHECYIRTASVVI 753 S+ + + + A C ++++ F ++PQ+ + L + + T +V Sbjct: 693 SKWLNDAQVVEAVCAIFEKSVKTLLDDFAPMVPQLCEMLGRMYSTIPQASALDLTRQLV- 751 Query: 754 EEFGHKDEYGP------LFVT--TFERFSQAASVRALNSSYICDQEPDLVEAYTNFASTF 805 F H+ + P L VT T F Q PD+V+++ + Sbjct: 752 HIFAHEPAHFPPIEALFLLVTSVTLTLFQQGPR-----------DHPDIVDSFMQLLAQA 800 Query: 806 VRTSRKEVLAASGALLEVSFQKAAICCTAMHRGAALAAMSYLSCFLEECLASLLGYTTSI 865 ++ + ++ ++ FQ A + A+ + + L C Sbjct: 801 LK-RKPDLFLCERLDVKAVFQCAVLALKFPEAPTVKASCGFFTELLPRC----------- 848 Query: 866 PEGSFNAMAIQVISHSGEGLVSNVVYALLGVSAMSRVHKCATILQQLAAIC 916 G ++ +V+ G L+ V+ A+ G ++ S + A IL L C Sbjct: 849 --GEVESVG-KVVQEDGRMLLIAVLEAIGGQASRSLMDCFADILFALNKHC 896

PyMOL of 2xwu

>pdb|2X19|B Chain B, Crystal Structure Of Importin13 - Rangtp Complex Length = 963

Back alignment and structure

>pdb|2X1G|F Chain F, Crystal Structure Of Importin13 - Mago-Y14 Complex Length = 971

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		962
2x19_B		963	Importin-13; nuclear transport, protein transport;	1e-105
2x1g_F		971	Cadmus; transport protein, developmental protein,	1e-83
3ibv_A		980	Exportin-T; karyopherin, heat repeat, cytoplasm, n	5e-55
3gjx_A		1073	Exportin-1; transport, cytoplasm, nucleus, RNA-bin	7e-53
3m1i_C		1049	Exportin-1; heat repeat, GTP-binding, nucleotide-b	7e-48
3a6p_A		1204	Exportin-5; exportin-5, RANGTP, nuclearexport, imp	1e-24
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-18
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-14
4fdd_A		852	Transportin-1; heat repeats, karyopherin, nuclear	2e-06
2bpt_A		861	Importin beta-1 subunit; nuclear transport, nucleo	1e-05

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B Length = 963	Back alignment and structure

 Score =  348 bits (894), Expect = e-105
 Identities = 184/963 (19%), Positives = 368/963 (38%), Gaps = 91/963 (9%)

Query: 1   MQMDLQIKVAQAVHVLNHDTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDF 60
           +   ++  V +A+H L +D    N+  A +WL+Q Q +  AW  +  +L  D+       
Sbjct: 19  LDFTVE-NVEKALHQLYYDPNIENKNLAQKWLMQAQVSPQAWHFSWQLLQPDK-----VP 72

Query: 61  EVEFFAAQILKRKIQNEGYYLQSAAKDALLNALLVAAKRFSSGPPQLLTQICLALSALIL 120
           E+++F A  L  KI      + +   ++L   L     RF+SG   +LT++C+AL++L L
Sbjct: 73  EIQYFGASALHIKISRYWSDIPTDQYESLKAQLFTQITRFASGSKIVLTRLCVALASLAL 132

Query: 121 RAVEHGKP-----IEKLFYSLQNLQSQDNGNMAVLEMLTVLPEEVIDSQASDCNISSAHR 175
             +    P     + +LF +  +        +A+LE+LTVLPEE   S+     +    +
Sbjct: 133 SMMPDAWPCAVADMVRLFQAEDSPVDGQGRCLALLELLTVLPEEFQTSR-----LPQYRK 187

Query: 176 SQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQG 235
                 L      V   L Q   +      P       +K+L+C  SWV+     +    
Sbjct: 188 GLVRTSLAVECGAVFPLLEQLLQQ------PSSPSCVRQKVLKCFSSWVQLEVPLQDC-- 239

Query: 236 SLAAHPLLNFVFNSLQVQSSFDVAIEVLVELVGRHEGL-----PQALLCRVPFLKELLLL 290
                 L+   F +LQ    FD ++E +V  + + +          L+  V  L+E  L 
Sbjct: 240 ----EALIQAAFAALQDSELFDSSVEAIVNAISQPDAQRYVNTLLKLIPLVLGLQE-QLR 294

Query: 291 PALTDGDEKVIGGLACLMSEIGQAAPSLIV---EASPEALALADALLSCVAFPS---EDW 344
            A+ +GD +   G+  +   +G+     ++   E     LAL + ++ C   P     + 
Sbjct: 295 QAVQNGDMETSHGICRIAVALGENHSRALLDQVEHWQSFLALVNMIMFCTGIPGHYPVNE 354

Query: 345 EIADSTLQFWSTLASYILGLDASIAKNKKHVEDMFFSVFSALLDALLLRAQVDESSFNDD 404
             +  TL FW TL   IL  +   A+ +   + ++  V+  L+D LL +AQ         
Sbjct: 355 TTSSLTLTFWYTLQDDILSFE---AEKQAVYQQVYRPVYFQLVDVLLHKAQFPSDEEYGF 411

Query: 405 GMVDLPDGLVQFRMNLVELLVDICQLLRSATF--IQKVFFGSWGSANVPIPWKEVETKLF 462
              D  +    +R+++ + L+ + ++L +     +         S+  P  W+  E  L+
Sbjct: 412 WSSDEKEQFRIYRVDISDTLMYVYEMLGAELLSNLYDKLGRLLTSSEEPYSWQHTEALLY 471

Query: 463 ALNVVSEVVLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISA 522
               ++E +          V+  L+ ++       ++     +  ++   IG+ S+W++ 
Sbjct: 472 GFQSIAETIDVN----YSDVVPGLIGLIPRISISNVQ-----LADTVMFTIGALSEWLAD 522

Query: 523 FQTNARPLLLFLAAGISEAVSSNACASALRKICEDASALIDEPSNLEILMWIGEALEKRH 582
                  +L  +   +     S +  S L+KIC +    +  P    I+    + L K+ 
Sbjct: 523 HPVMINSVLPLVLHALGNPELSVSSVSTLKKICRECKYDL-PPYAANIVAVSQDVLMKQI 581

Query: 583 LPLEDEEEVVGAISLILGSVSNKELKNNLLARLLSSSYEAIGKLIDGDNNHSLIHNPATY 642
                   ++ A+  +L ++  +E+  NL   L+S   + + KL +   N S        
Sbjct: 582 HKTSQCMWLMQALGFLLSALQVEEILKNLH-SLISPYIQQLEKLAEEIPNPSNKLAIVHI 640

Query: 643 TQILSSATRGLYRMGTVFSHLPVPLPTN--PAGDDPIFALLRVFWPMLEKLFRSEHMENG 700
             +LS+    L        H    L     P G +P+  +L+  + +++K+  S+ + + 
Sbjct: 641 LGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVVVLQQVFQLIQKVL-SKWLNDA 699

Query: 701 NLSTAACRALSLAIQSSGQHFVTLLPQVLDCLSTNFVSFQNHECYIRTASVVIEEFGHKD 760
            +  A C     ++++    F  ++PQ+ + L   + +       +     ++  F H+ 
Sbjct: 700 QVVEAVCAIFEKSVKTLLDDFAPMVPQLCEMLGRMYSTIP-QASALDLTRQLVHIFAHEP 758

Query: 761 EYGPLFVTTFERFSQAASVRALNSSYICDQEPDLVEAYTNFASTFVRTSRKEVLAASGAL 820
            + P     F   +                 PD+V+++    +  ++      L     +
Sbjct: 759 AHFPPIEALFLLVTSVTLT---LFQQGPRDHPDIVDSFMQLLAQALKRKPDLFLCERLDV 815

Query: 821 LEVSFQKAAICCTAMHRGAALAAMSYLSCFLEECLASLLGYTTSIPEGSFNAMAIQVISH 880
             V FQ A +           A+  + +  L  C                     +V+  
Sbjct: 816 KAV-FQCAVLALKFPEAPTVKASCGFFTELLPRC--------------GEVESVGKVVQE 860

Query: 881 SGEGLVSNVVYALLGVSAMSRVHKCATILQQLAAICSISERTSGKAILSWESLQGWLHSA 940
            G  L+  V+ A+ G ++ S +   A IL  L   C             +  L  W+  A
Sbjct: 861 DGRMLLIAVLEAIGGQASRSLMDCFADILFALNKHC-------------FSLLSMWIKEA 907

Query: 941 VSL 943
           +  
Sbjct: 908 LQP 910

PyMOL of 2x19

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} Length = 971	Back alignment and structure

>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T* Length = 980	Back alignment and structure

>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A Length = 1073	Back alignment and structure

>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B Length = 1049	Back alignment and structure

>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens} Length = 1204	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852	Back alignment and structure

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Length = 861	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		962
4hat_C		1023	Exportin-1; heat repeat, nuclear export, RAN-ranbp	100.0
3gjx_A		1073	Exportin-1; transport, cytoplasm, nucleus, RNA-bin	100.0
2x1g_F		971	Cadmus; transport protein, developmental protein,	100.0
3ibv_A		980	Exportin-T; karyopherin, heat repeat, cytoplasm, n	100.0
2x19_B		963	Importin-13; nuclear transport, protein transport;	100.0
3m1i_C		1049	Exportin-1; heat repeat, GTP-binding, nucleotide-b	100.0
3a6p_A		1204	Exportin-5; exportin-5, RANGTP, nuclearexport, imp	100.0
1wa5_C		960	Importin alpha RE-exporter; nuclear transport/comp	100.0
4fdd_A		852	Transportin-1; heat repeats, karyopherin, nuclear	100.0
2bpt_A		861	Importin beta-1 subunit; nuclear transport, nucleo	100.0
1qgr_A		876	Protein (importin beta subunit); transport recepto	99.95
1ibr_B		462	P95, importin beta-1 subunit, nuclear factor; smal	99.87
1u6g_C		1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	99.46
2bpt_A		861	Importin beta-1 subunit; nuclear transport, nucleo	99.37
1qgr_A		876	Protein (importin beta subunit); transport recepto	99.33
4fdd_A		852	Transportin-1; heat repeats, karyopherin, nuclear	99.3
1w9c_A		321	CRM1 protein, exportin 1; nuclear protein, nuclear	99.29
1b3u_A		588	Protein (protein phosphatase PP2A); scaffold prote	98.71
1u6g_C		1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	98.66
1b3u_A		588	Protein (protein phosphatase PP2A); scaffold prote	98.62
1ibr_B		462	P95, importin beta-1 subunit, nuclear factor; smal	97.56
2qk1_A		249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	97.01
2vgl_B		591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	96.93
2qk2_A		242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	96.45
2x1g_F		971	Cadmus; transport protein, developmental protein,	96.05
2jdq_A		450	Importin alpha-1 subunit; transport, PB2 subunit,	96.05
1wa5_B		530	Importin alpha subunit; nuclear transport/complex,	95.37
4hat_C		1023	Exportin-1; heat repeat, nuclear export, RAN-ranbp	94.94
1wa5_C		960	Importin alpha RE-exporter; nuclear transport/comp	94.6
2vgl_B		591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	94.43
1w63_A		618	Adapter-related protein complex 1 gamma 1 subunit;	94.34
4b8j_A		528	Importin subunit alpha-1A; transport protein, nucl	93.95
1wa5_B		530	Importin alpha subunit; nuclear transport/complex,	93.54
2qk2_A		242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	93.51
3tpo_A		529	Importin subunit alpha-2; nuclear import, protein	93.41
2z6g_A		780	B-catenin; FULL-length, beta-catenin, cell adhesio	92.44
3ul1_B		510	Importin subunit alpha-2; arm repeat, armadillo re	92.22
3gjx_A		1073	Exportin-1; transport, cytoplasm, nucleus, RNA-bin	91.9
2x19_B		963	Importin-13; nuclear transport, protein transport;	91.85
3m1i_C		1049	Exportin-1; heat repeat, GTP-binding, nucleotide-b	91.69
2qk1_A		249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	90.2
2jdq_A		450	Importin alpha-1 subunit; transport, PB2 subunit,	89.98
1w63_A		618	Adapter-related protein complex 1 gamma 1 subunit;	89.48
1w9c_A		321	CRM1 protein, exportin 1; nuclear protein, nuclear	88.8
4b8j_A		528	Importin subunit alpha-1A; transport protein, nucl	86.61
4db8_A		252	Armadillo-repeat protein; solenoid repeat, de novo	86.03
1oyz_A		280	Hypothetical protein YIBA; structural genomics, PS	84.61
3u0r_A		507	Apoptosis inhibitor 5; heat repeat, armadillo repe	83.42
3ibv_A		980	Exportin-T; karyopherin, heat repeat, cytoplasm, n	80.55
2iw3_A		986	Elongation factor 3A; acetylation, ATP-binding, pr	80.18

>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B	Back alignment and structure

Probab=100.00  E-value=3.5e-85  Score=813.55  Aligned_cols=868  Identities=14%  Similarity=0.160  Sum_probs=683.3

Q ss_pred             chHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcChHHHHHHHHhhccCCCCCCcchhHHHHHhHHHHHHHhcCCCCCC
Q 002126            3 MDLQIKVAQAVHVLNHDTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQ   82 (962)
Q Consensus         3 ~~~~~~v~~ai~~ly~~~d~~~~~~A~~~L~~~Q~s~~aW~~~~~LL~~~~~~~~~~~~v~ffaA~tL~~ki~~~~~~l~   82 (962)
                      || .+.+++||+++|+++++ .|++|++||++||++|++|.+|..+|+.+     .+.++|||||++|++||+++|..+|
T Consensus        13 ~d-v~~Le~av~~ly~p~~~-~r~~A~~~L~~~q~sp~aw~~~~~iL~~s-----~~~~vR~faa~~Lk~~I~~~W~~L~   85 (1023)
T 4hat_C           13 LD-IALLDQVVSTFYQGSGV-QQKQAQEILTKFQDNPDAWQKADQILQFS-----TNPQSKFIALSILDKLITRKWKLLP   85 (1023)
T ss_dssp             CC-HHHHHHHHHHHHHCCHH-HHHHHHHHHHHHHHCTTGGGGHHHHHHHC-----CCHHHHHHHHHHHHHHHHHHGGGSC
T ss_pred             CC-HHHHHHHHHHHhCCChH-HHHHHHHHHHHHHcCccHHHHHHHHhcCC-----CCHHHHHHHHHHHHHHHHhhhhcCC
Confidence            44 67999999999977654 89999999999999999999999999763     3579999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHhcCC------CHHHHHHHHHHHHHHHhhhc--cCCchHHHHHHHhhcccCCCcchHHHHHHHh
Q 002126           83 SAAKDALLNALLVAAKRFSSG------PPQLLTQICLALSALILRAV--EHGKPIEKLFYSLQNLQSQDNGNMAVLEMLT  154 (962)
Q Consensus        83 ~e~~~~Lr~~Ll~~l~~~~~~------~~~v~~kL~~aLa~l~~~~~--~W~~~i~~li~~~~~~~~~~~~~~~lL~iL~  154 (962)
                      ++++..||+.|++++.++..+      ++.|++|||.+++.++.+.+  .||+++.+++..+++   ++..+.++|.+|+
T Consensus        86 ~e~~~~Ir~~Ll~~l~~~~~~~~~i~~~~~i~nKLa~~la~I~~~~~p~~Wp~~l~dL~~~l~~---~~~~~~~~L~iL~  162 (1023)
T 4hat_C           86 NDHRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQNWPEFIPELIGSSSS---SVNVCENNMIVLK  162 (1023)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSHHHHHHCHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHTTT---CHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhChhhchHHHHHHHHHhcC---CHHHHHHHHHHHH
Confidence            999999999999999886543      57899999999999999985  699999999999975   3456788999999


Q ss_pred             hcccccccccccccCCCHHHHHHHHHHHHhhhhHHHHHHHHhHhhccCCCCCcchhhhHHHHHHHHHHHHHhcccccccc
Q 002126          155 VLPEEVIDSQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQ  234 (962)
Q Consensus       155 ~l~EE~~~~~~~~~~l~~~~r~~~~~~l~~~~~~v~~~l~~~l~~~~~~~~~~~~~~~~~~~l~cl~sWi~~~~~~~~~~  234 (962)
                      .|+||+.+....  .++..||..+++.|..+++.|++++.+++....       +.++...+|+|+.+|+.     |+|.
T Consensus       163 ~L~EEV~~~~~~--~l~~~r~~~lk~~l~~~~~~I~~ll~~iL~~~~-------~~~l~~~~L~~l~s~l~-----WI~i  228 (1023)
T 4hat_C          163 LLSEEVFDFSAE--QMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGA-------SSSLIVATLESLLRYLH-----WIPY  228 (1023)
T ss_dssp             HHHHHHHTSCTT--TSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCS-------SCHHHHHHHHHHHHHTT-----TSCT
T ss_pred             HHHHHHHHhhhc--cchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-------CHHHHHHHHHHHHHHHH-----hCCH
Confidence            999999764322  267889999999999999999999999987642       34678899999999999     8899


Q ss_pred             hhhhhcchHHHHH-HhcCCCCcHHHHHHHHHHHHhcCC--C---hhHH---HHhh------------hhhhHHhhhhhhh
Q 002126          235 GSLAAHPLLNFVF-NSLQVQSSFDVAIEVLVELVGRHE--G---LPQA---LLCR------------VPFLKELLLLPAL  293 (962)
Q Consensus       235 ~~~~~~~ll~~~~-~~L~~~~~~~~a~~~l~eil~~~~--~---~~~~---l~~~------------~~~l~~~~~~~~~  293 (962)
                      +.+.++++++.+| ..|.+++++++|++|+++++++..  +   +.+.   +++.            ...+.+.+.  ..
T Consensus       229 ~~i~~~~ll~~l~~~~L~~~~~r~~A~ecL~eIv~~~~~~~~~~~~~~l~~lf~~~l~~l~~~i~p~~~~l~~~~~--~~  306 (1023)
T 4hat_C          229 RYIYETNILELLSTKFMTSPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYA--NA  306 (1023)
T ss_dssp             HHHHSSSHHHHHHTHHHHSHHHHHHHHHHHHHHHTSCCCSSCHHHHHHHHHHHHHHHHHHHHHTCCTTCCHHHHHH--HT
T ss_pred             HHhcchhHHHHHHHHHcCCHHHHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHh--cc
Confidence            9888899999999 999999999999999999998431  2   3321   2222            233444443  23


Q ss_pred             ccCcHhHHhhHHHHHHHHhHhhhHHHHhcCh--h-HHHHHHHHHhcccCCCCCchhhhhhHHHHHHHHHHHhhcchhhhh
Q 002126          294 TDGDEKVIGGLACLMSEIGQAAPSLIVEASP--E-ALALADALLSCVAFPSEDWEIADSTLQFWSTLASYILGLDASIAK  370 (962)
Q Consensus       294 ~~~d~d~~~~l~~l~~~~~e~~~~~l~~~~~--~-~~~ll~~ll~~~~~p~~d~~v~~~t~~FW~~l~e~l~~~~~~~~~  370 (962)
                      .++|.+.++++|++|+++|++|...+.+++.  . ....++.|+.|++++  |++++++||+|||.|+++++..      
T Consensus       307 ~~~D~e~~~~l~~l~~~~~e~~~~li~~~~~~~~~l~~~l~~Ll~~~~~~--d~ei~~~tl~FW~~L~~~l~~e------  378 (1023)
T 4hat_C          307 NGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLLNAHQYLIQLSKIE--ERELFKTTLDYWHNLVADLFYE------  378 (1023)
T ss_dssp             CTTHHHHHHHHHHHHHHHHHHHGGGGTSCGGGHHHHHHHHHHHHHHTTSS--CHHHHHHHHHHHHHHHHHHTTS------
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHhhCCC--cHHHHHHHHHHHHHHHHHHHhc------
Confidence            4567889999999999999999998876532  2 234577999999997  7999999999999999988642      


Q ss_pred             hhhhhhhhhHHHHHHHHHHHHHHhccCCCCC-----CCCC------CCCCCchHHHHHHHHHHHHHHHHHhcCcHHHHHH
Q 002126          371 NKKHVEDMFFSVFSALLDALLLRAQVDESSF-----NDDG------MVDLPDGLVQFRMNLVELLVDICQLLRSATFIQK  439 (962)
Q Consensus       371 ~~~~~~~~~~~~~~~L~~~l~~k~~~p~~~~-----~~~~------~~d~~d~f~~fR~~~~d~l~~~~~il~~~~~l~~  439 (962)
                        +.....|+|+|.+|+.++++||+||++..     .++|      +.|+.+.|+.||    |+|.+++.+.|++ ++..
T Consensus       379 --~~~~~~~~~~~~~L~~vli~km~~P~e~~ive~d~~~~~~e~~~d~d~~~~f~~~R----d~L~~l~~l~~~~-~~~~  451 (1023)
T 4hat_C          379 --PLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSER----EVLVYLTHLNVID-TEEI  451 (1023)
T ss_dssp             --TTTGGGGHHHHHHHHHHHHHSCCCCTTCCEEECTTSCEEECSSCCGGGHHHHHHHH----HHHHHHHHHCHHH-HHHH
T ss_pred             --hHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCccHHHHhccchHHHHHHHHHH----HHHHHHhccCHHH-HHHH
Confidence              12457899999999999999999998421     1133      445667788888    9999999988864 5666


Q ss_pred             HHHhhhcC-CCCCCCchhhhHHHHHHHhhhhccccCCCccchhHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHHhhHH
Q 002126          440 VFFGSWGS-ANVPIPWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSK  518 (962)
Q Consensus       440 ~~~~l~~~-~~~~~~W~~~Ea~Lf~l~~iae~i~~~~~~~~l~~i~~~l~~l~~~~~~~~~~~~~v~~~t~~~~ig~ys~  518 (962)
                      +++.+... .+++++|+.+||++||+++|++++.++.....++.+++.+..++.+...+. ..+.++. |+|+++|+|++
T Consensus       452 ~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d-~k~~v~~-t~~~~lGry~~  529 (1023)
T 4hat_C          452 MISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKD-NKAVVAS-DIMYVVGQYPR  529 (1023)
T ss_dssp             HHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHH-HHHHHHH-HHHHHHHTCHH
T ss_pred             HHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCc-chHHHHH-HHHHHHHHHHH
Confidence            66554321 123478999999999999999998754221125677776667775421110 0112344 55799999999


Q ss_pred             HHHhChhchHHHHHHHHHhccc--CchhHHHHHHHHHHHHHhhcccCC------CccHHHHHHHHHHHHhcCCChhhHHH
Q 002126          519 WISAFQTNARPLLLFLAAGISE--AVSSNACASALRKICEDASALIDE------PSNLEILMWIGEALEKRHLPLEDEEE  590 (962)
Q Consensus       519 wl~~~p~~L~~vL~~l~~~l~~--~~~~~~Aa~al~~lc~~c~~~l~~------p~~~~~l~~~~~~l~~~~l~~~~~~~  590 (962)
                      |+..||++|+++++++++++++  |+++.+||.||++||++|+..+..      +++++.+.+.+.... ..++..++..
T Consensus       530 wl~~~~~~L~~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p~~~~il~~l~~~~-~~l~~~~~~~  608 (1023)
T 4hat_C          530 FLKAHWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTT-ADLQPQQVHT  608 (1023)
T ss_dssp             HHHHCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHH-TTSCHHHHHH
T ss_pred             HHhccHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHHHHHHHH-HhCCHHHHHH
Confidence            9999999999999999999964  579999999999999999988742      235665555444432 3678999999


Q ss_pred             HHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCchhhH--HHhHHHHHHHHhhhhhcccccccCC
Q 002126          591 VVGAISLILGSVSNKELKNNLLARLLSSSYEAIGKLIDGDNNHSLIHNPATYT--QILSSATRGLYRMGTVFSHLPVPLP  668 (962)
Q Consensus       591 l~eai~~vi~~lp~~e~~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~--~~l~~~~~~l~~L~~i~~~l~~~~~  668 (962)
                      +++|+|.+|+++|+++.+..+++.|+.|+.+.|+++.++..     .++..+.  +..+.....+++++++.+.+.    
T Consensus       609 lyeai~~vi~~~~~~~~~~~~l~~L~~~~~~~~~~l~~~~~-----~~~~~~~d~~~~~~l~~il~~~~~v~~~lg----  679 (1023)
T 4hat_C          609 FYKACGIIISEERSVAERNRLLSDLMQLPNMAWDTIVEQST-----ANPTLLLDSETVKIIANIIKTNVAVCTSMG----  679 (1023)
T ss_dssp             HHHHHHHHHTTCCSHHHHHHHHHHHTHHHHHHHHHHHHHHH-----HCTTGGGCHHHHHHHHHHHHHHHHHHHHHG----
T ss_pred             HHHHHHHHHHhCCCHhhHHHHHHHHHHhHHHHHHHHHHHHh-----cCchhhcCHHHHHHHHHHHHHHHHHHHHhc----
Confidence            99999999999999887899999999999999999987531     1222221  112233334444444444333    


Q ss_pred             CCCCCCchHHHHHHHHHHHHHHHHHhhhccc--------hHH-----HHHHHHHHHHHHHhh-----hhh------hHhh
Q 002126          669 TNPAGDDPIFALLRVFWPMLEKLFRSEHMEN--------GNL-----STAACRALSLAIQSS-----GQH------FVTL  724 (962)
Q Consensus       669 ~~~~~~~p~~~~~~~i~~~l~~i~~~~~~~~--------~~v-----~e~~c~~~~~~~~~l-----~~~------~~p~  724 (962)
                            +++.+.++.+|+.+..+++ .+.+.        +.+     ..+.|+++|+.+-.+     +..      ...+
T Consensus       680 ------~~f~~~~~~i~~~~l~~y~-~~s~~i~~~~~~~g~~~~~~~~~r~~r~ik~~il~l~~~~i~~~~~~~~~~~~~  752 (1023)
T 4hat_C          680 ------ADFYPQLGHIYYNMLQLYR-AVSSMISAQVAAEGLIATKTPKVRGLRTIKKEILKLVETYISKARNLDDVVKVL  752 (1023)
T ss_dssp             ------GGGHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHCGGGGGSHHHHHHHHHHHHHHHHHHHHHHHCSCHHHHHHHT
T ss_pred             ------HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhCCchhhccHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHh
Confidence                  5678888999999988886 34221        111     236788887764432     111      3458


Q ss_pred             HHHHHHHHHHhhhhhc---CcchHHHHHHHHHHHhcCCCCccchHHHHHHHHhhhHHHHHhhcCCCCCCCCchHHHHHHH
Q 002126          725 LPQVLDCLSTNFVSFQ---NHECYIRTASVVIEEFGHKDEYGPLFVTTFERFSQAASVRALNSSYICDQEPDLVEAYTNF  801 (962)
Q Consensus       725 l~~~~~~l~~~f~~~~---~~~~~L~l~~~lv~~~g~~~~~~~~l~~l~~~l~~~~~~~~l~~~~~~~~~pD~~~~~f~l  801 (962)
                      +|++++.++..|..+.   +++++|++.+++|+++|+  .+.+.+..++..+..+| +.++++  ++.++||++.+||+|
T Consensus       753 ~~~l~~~vl~dY~~~~~~~r~~~vL~l~s~iv~~~~~--~~~~~~~~il~~vf~~T-l~mi~~--~~~~~Pe~r~~ff~l  827 (1023)
T 4hat_C          753 VEPLLNAVLEDYMNNVPDARDAEVLNCMTTVVEKVGH--MIPQGVILILQSVFECT-LDMINK--DFTEYPEHRVEFYKL  827 (1023)
T ss_dssp             HHHHHHHHHHHHHHSCGGGCCHHHHHHHHHHHHHHGG--GCHHHHHHHHHHHHHHH-HHHHSS--CSSSSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCChhhccHHHHHHHHHHHHHHHH--hhhhhhHHHHHHHHHHH-HHHHhc--ccccChHHHHHHHHH
Confidence            8999999999998653   368999999999999996  46788889999999998 898884  899999999999999


Q ss_pred             HHHHHHhhhHHHHhhchhchHHHHHHHHHhhccCchhHHHHHHHHHHHHHhhhhhhccCCCCCCCCccHHHHHHHHHHhc
Q 002126          802 ASTFVRTSRKEVLAASGALLEVSFQKAAICCTAMHRGAALAAMSYLSCFLEECLASLLGYTTSIPEGSFNAMAIQVISHS  881 (962)
Q Consensus       802 ~~~~l~~~p~~~l~~~~~~l~~~l~~~l~~l~~~e~~~~~a~~~fl~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  881 (962)
                      +.+++++||..++..+++.+..+++++++|++++||++..++++|+.+++......    ++       .+..++++++|
T Consensus       828 l~~~~~~~f~~~~~~~~~~~~~~~~~~~~a~~h~~r~~~~~~l~~~~~ll~~~~~~----~~-------~~~~~~f~~~~  896 (1023)
T 4hat_C          828 LKVINEKSFAAFLELPPAAFKLFVDAICWAFKHNNRDVEVNGLQIALDLVKNIERM----GN-------VPFANEFHKNY  896 (1023)
T ss_dssp             HHHHHHHCTHHHHTSCHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHH----CS-------SHHHHHHHHHH
T ss_pred             HHHHHHHChHHHHcCCHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHhc----CC-------hHHHHHHHHHH
Confidence            99999999999998876788999999999999999999999999999999876531    11       25688999999


Q ss_pred             cHHHHHHHHHHhcCCCcccchhhHHHHHHHHHHHhhhhcccch---------hhccchhHHHHHHHHHHh-hhhhh
Q 002126          882 GEGLVSNVVYALLGVSAMSRVHKCATILQQLAAICSISERTSG---------KAILSWESLQGWLHSAVS-LFLIL  947 (962)
Q Consensus       882 G~~Lv~~ll~~~~g~~~rs~~~~~~~iL~~l~~~~~~~~~~~~---------~~~~~~~~~~~Wl~~~l~-~~~~~  947 (962)
                      +..++..+|..+.+..+++.+...+.+|+.|+.++..- .+..         ++......+++|+.+.|. .+|+.
T Consensus       897 ~~~~~~~~~~v~td~~h~~~f~~~~~~l~~l~~~~~~~-~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~fp~~  971 (1023)
T 4hat_C          897 FFIFVSETFFVLTDSDHKSGFSKQALLLMKLISLVYDN-KISVPLYQEAEVPQGTSNQVYLSQYLANMLSNAFPHL  971 (1023)
T ss_dssp             HHHHHHHHHHHHHSSSCGGGHHHHHHHHHHHHHHHHTT-CCCSCSSCTTSSCTTCCHHHHHHHHHHHHHHHHCTTS
T ss_pred             HHHHHHHHHHHHhCchhhhhHHHHHHHHHHHHHHHHcC-CcccccCCccccCCCCchHHHHHHHHHHHHHHhCCCC
Confidence            99999999999999999999999999999999653320 1111         122445678999998887 44544

PyMOL of 4hat

>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A	Back alignment and structure

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}	Back alignment and structure

>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*	Back alignment and structure

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B	Back alignment and structure

>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B	Back alignment and structure

>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}	Back alignment and structure

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A	Back alignment and structure

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*	Back alignment and structure

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A	Back alignment and structure

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A	Back alignment and structure

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A	Back alignment and structure

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A	Back alignment and structure

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A	Back alignment and structure

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A	Back alignment and structure

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*	Back alignment and structure

>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19	Back alignment and structure

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A	Back alignment and structure

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A	Back alignment and structure

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A	Back alignment and structure

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A	Back alignment and structure

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}	Back alignment and structure

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B	Back alignment and structure

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}	Back alignment and structure

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}	Back alignment and structure

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A	Back alignment and structure

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A	Back alignment and structure

>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B	Back alignment and structure

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A	Back alignment and structure

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B	Back alignment and structure

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1	Back alignment and structure

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A	Back alignment and structure

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A	Back alignment and structure

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}	Back alignment and structure

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B	Back alignment and structure

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}	Back alignment and structure

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...	Back alignment and structure

>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A	Back alignment and structure

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B	Back alignment and structure

>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B	Back alignment and structure

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}	Back alignment and structure

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A	Back alignment and structure

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1	Back alignment and structure

>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19	Back alignment and structure

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A	Back alignment and structure

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}	Back alignment and structure

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16	Back alignment and structure

>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A	Back alignment and structure

>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*	Back alignment and structure

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		962
d1qbkb_		888	a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi	6e-08
d2bpta1		861	a.118.1.1 (A:1-861) Importin beta {Baker's yeast (	4e-06

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888	Back information, alignment and structure


class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.3 bits (129), Expect = 6e-08
 Identities = 91/749 (12%), Positives = 192/749 (25%), Gaps = 66/749 (8%)

Query: 9   VAQAVHVLN--HDTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFA 66
           + Q + +L      ++  +    Q L Q  Q          +LT  +     D      +
Sbjct: 10  LQQILQLLKESQSPDTTIQRTVQQKLEQLNQYPDFNNYLIFVLTKLKSE---DEPTRSLS 66

Query: 67  AQILKRKIQNEGYYLQSAAKDALLNALLVAAKRFSSGPPQLLTQICLALSALILRAVEHG 126
             ILK  ++       +   D + +  L          P +   + + ++  I    E  
Sbjct: 67  GLILKNNVKAHFQNFPNGVTDFIKSECLNN---IGDSSPLIRATVGILITT-IASKGELQ 122

Query: 127 KPIEKLFYSLQNLQSQD-NGNMAVLEMLTVLPEEVIDSQASDCNISSAHRSQYGQELLSH 185
              + L      L S+D N        L  + E+  +   SD         +    ++  
Sbjct: 123 NWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSD------VLDRPLNIMI-- 174

Query: 186 TPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQGSLAAHPLLNF 245
            P  ++F    S K                 +R              +Q  +        
Sbjct: 175 -PKFLQFFKHSSPK-----------------IRSHAVACVNQFIISRTQALMLHIDSFTE 216

Query: 246 VFNSLQVQSSFDVAIEVLVELVGRHEGLPQALLCRVPFLKELLLLPALTDGDEKVIGGLA 305
              +L      +V   V   LV   E     LL  +  + E  +L    D DE V     
Sbjct: 217 NLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVE-YMLQRTQDQDENVALEAC 275

Query: 306 CLMSEIGQAAPSLIVEASPEALALADALLSCVAFPSEDWEIADSTLQFWSTLASYILGLD 365
                + +      V        L   L++ + +   D  +    ++   T+      + 
Sbjct: 276 EFWLTLAEQPICKDV-LVRHLPKLIPVLVNGMKYSDIDIILLKGDVEEDETIPDSEQDIR 334

Query: 366 ASIAKNKKHVEDMFFSVFSALLDALLLRAQVDESSFNDDGMVDLPDGLVQFRMNLVELLV 425
               +++   +           D        D  S  +          V   +   ELL 
Sbjct: 335 PRFHRSRTVAQQHDEDGIEEEDDDDDEIDDDDTISDWNLRKCSAAALDVLANVYRDELLP 394

Query: 426 DICQLL---RSATFIQKVFFGSWGSANVPIPWKEVETKLFALNVVSEVVLQEGQAFD--F 480
            I  LL              G      +     +         +   +     +      
Sbjct: 395 HILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRS 454

Query: 481 SVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISAFQTNARPLLLFLAAGISE 540
                L        S+    ++  +   L   I   +K +     +A   L   A     
Sbjct: 455 ITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEA----- 509

Query: 541 AVSSNACASALRKICEDASALIDEPSNLEILMWIGEALEKRHLPLEDEEEVVGAISLILG 600
                     L  I +       +  + + L+ + +A+      +         I +++ 
Sbjct: 510 ---CTELVPYLAYILDTLVFAFSKYQH-KNLLILYDAIGTLADSVGHHLNKPEYIQMLMP 565

Query: 601 SVSNKELKNNLLARLLSSSYEAIGKLIDGDNNHSLIHNPATYTQILSSATRGLYR----- 655
            +  K        + L    E +  +     +  L +    Y + ++   + L +     
Sbjct: 566 PLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNN 625

Query: 656 ---------MGTVFSHLPVPLPTNPAGDDPIFALLRVFWPMLEKLFRSEHMENGNLSTAA 706
                               L     G       L     +L  +++    +   +  ++
Sbjct: 626 AQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSS 685

Query: 707 CRALSLAIQSSGQHFVTLLPQVLDCLSTN 735
              L    ++  QH    +   +  L TN
Sbjct: 686 FALLGDLTKACFQHVKPCIADFMPILGTN 714

PyMOL of d1qbkb_

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 861	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		962
d2bpta1		861	Importin beta {Baker's yeast (Saccharomyces cerevi	99.94
d1qbkb_		888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	99.94
d1qgra_		876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	99.92
d1wa5c_		959	Exportin Cse1p {Baker's yeast (Saccharomyces cerev	99.91
d1ibrb_		458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	99.75
d1w9ca_		321	Exportin-1 (Xpo1, Crm1) {Human (Homo sapiens) [Tax	99.29
d1u6gc_		1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	99.01
d2bpta1		861	Importin beta {Baker's yeast (Saccharomyces cerevi	98.97
d1qbkb_		888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	98.6
d1b3ua_		588	Constant regulatory domain of protein phosphatase	98.39
d1b3ua_		588	Constant regulatory domain of protein phosphatase	98.26
d1qgra_		876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	98.24
d1u6gc_		1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	98.01
d1ibrb_		458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	97.7
d2vglb_		579	Adaptin beta subunit N-terminal fragment {Human (H	96.0
d2vglb_		579	Adaptin beta subunit N-terminal fragment {Human (H	91.81
d1q1sc_		434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	90.0
d1wa5c_		959	Exportin Cse1p {Baker's yeast (Saccharomyces cerev	88.73
d1w9ca_		321	Exportin-1 (Xpo1, Crm1) {Human (Homo sapiens) [Tax	88.65
d1q1sc_		434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	85.87
d1wa5b_		503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	80.47

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.94  E-value=4.9e-22  Score=245.47  Aligned_cols=716  Identities=12%  Similarity=0.104  Sum_probs=432.8

Q ss_pred             HHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcC--hHHHHHHHHhhccCCCCCCcchhHHHHHhHHHHHHHhcCCC----
Q 002126            6 QIKVAQAVHVLNHDTESCNRVAANQWLVQFQQT--DAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGY----   79 (962)
Q Consensus         6 ~~~v~~ai~~ly~~~d~~~~~~A~~~L~~~Q~s--~~aW~~~~~LL~~~~~~~~~~~~v~ffaA~tL~~ki~~~~~----   79 (962)
                      .+++.+++...+.++|++.|++|+++|++++++  |+.+..+.+++...+    .+.++|++|+.+||+.+.++|.    
T Consensus         3 ~~~~~~~L~~~~~s~d~~~r~~Ae~~L~~~~~~~~~~~~~~l~~il~~~~----~~~~~r~~A~i~lkn~i~~~~~~~~~   78 (861)
T d2bpta1           3 TAEFAQLLENSILSPDQNIRLTSETQLKKLSNDNFLQFAGLSSQVLIDEN----TKLEGRILAALTLKNELVSKDSVKTQ   78 (861)
T ss_dssp             HHHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHTCTT----SCHHHHHHHHHHHHTTTCCSSHHHHH
T ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHcCC----CCHHHHHHHHHHHHHHhhcccchhhh
Confidence            458889988755578999999999999999987  777778888887643    4579999999999999998874    


Q ss_pred             --------CCChHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhh-c--cCCchHHHHHHHhhcccCCCcchHH
Q 002126           80 --------YLQSAAKDALLNALLVAAKRFSSGPPQLLTQICLALSALILRA-V--EHGKPIEKLFYSLQNLQSQDNGNMA  148 (962)
Q Consensus        80 --------~l~~e~~~~Lr~~Ll~~l~~~~~~~~~v~~kL~~aLa~l~~~~-~--~W~~~i~~li~~~~~~~~~~~~~~~  148 (962)
                              .++++.+..+|+.+++.+.   ..++.|+++++.+++.++... +  .||+.++.+++.+.+.. .......
T Consensus        79 ~~~~~~~~~i~~~~~~~ik~~ll~~l~---~~~~~vr~~~a~~i~~i~~~~~p~~~wpeli~~L~~~~~s~~-~~~~~~~  154 (861)
T d2bpta1          79 QFAQRWITQVSPEAKNQIKTNALTALV---SIEPRIANAAAQLIAAIADIELPHGAWPELMKIMVDNTGAEQ-PENVKRA  154 (861)
T ss_dssp             HHHHHHHHHSCHHHHHHHHHHHHHHHT---CSSHHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHHHHTSTTS-CHHHHHH
T ss_pred             hHHhhhHhcCCHHHHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHHHHhCCcCchHHHHHHHHHHhcCCC-cHHHHHH
Confidence                    5899999999999998775   457899999999999998664 3  59999999999987632 1223456


Q ss_pred             HHHHHhhcccccccccccccCCCHHHHHHHHHHHHhhhhHHHHHHHHhHhhccCCCCCcchhhhHHHHHHHHHHHHHhcc
Q 002126          149 VLEMLTVLPEEVIDSQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGC  228 (962)
Q Consensus       149 lL~iL~~l~EE~~~~~~~~~~l~~~~r~~~~~~l~~~~~~v~~~l~~~l~~~~~~~~~~~~~~~~~~~l~cl~sWi~~~~  228 (962)
                      .+.+|..+.|+....      ..         .+......++..+.+.+....      .+..++..+++|+.+++.+. 
T Consensus       155 al~~l~~i~e~~~~~------~~---------~~~~~~~~il~~i~~~~~~~~------~~~~v~~~a~~~l~~~~~~~-  212 (861)
T d2bpta1         155 SLLALGYMCESADPQ------SQ---------ALVSSSNNILIAIVQGAQSTE------TSKAVRLAALNALADSLIFI-  212 (861)
T ss_dssp             HHHHHHHHHHTSSTT------SS---------TTGGGHHHHHHHHHHHHSTTC------CCHHHHHHHHHHHHHHGGGC-
T ss_pred             HHHHHHHHHHHhhHH------HH---------HHHHHHHHHHHHHHHHHhccc------CCHHHHHHHHHHHHHHHHHH-
Confidence            788888888877421      11         011122223322222222211      23568889999999998743 


Q ss_pred             cccccchhh---hhcchHHHHHHhcCCCCcHHHHHHHHHHHHhcCCChhHHHHhhhhhhHHhhhhhhhccCcHhHHhhHH
Q 002126          229 FTEISQGSL---AAHPLLNFVFNSLQVQSSFDVAIEVLVELVGRHEGLPQALLCRVPFLKELLLLPALTDGDEKVIGGLA  305 (962)
Q Consensus       229 ~~~~~~~~~---~~~~ll~~~~~~L~~~~~~~~a~~~l~eil~~~~~~~~~l~~~~~~l~~~~~~~~~~~~d~d~~~~l~  305 (962)
                          +....   ....+++.++.                                           .++++|.+.....+
T Consensus       213 ----~~~~~~~~~~~~~~~~l~~-------------------------------------------~~~~~~~~~~~~~~  245 (861)
T d2bpta1         213 ----KNNMEREGERNYLMQVVCE-------------------------------------------ATQAEDIEVQAAAF  245 (861)
T ss_dssp             ----HHHHTSHHHHHHHHHHHHH-------------------------------------------HHTCSCHHHHHHHH
T ss_pred             ----hHhHHhhhhhhHHHHhHHH-------------------------------------------HhcCCCHHHHHHHH
Confidence                11110   00111111211                                           23344455555555


Q ss_pred             HHHHHHhHhhhHHHHhcChhHHHHHHHH-HhcccCCCCCchhhhhhHHHHHHHHHHHhhcchhhhh---hhhhhhhhhHH
Q 002126          306 CLMSEIGQAAPSLIVEASPEALALADAL-LSCVAFPSEDWEIADSTLQFWSTLASYILGLDASIAK---NKKHVEDMFFS  381 (962)
Q Consensus       306 ~l~~~~~e~~~~~l~~~~~~~~~ll~~l-l~~~~~p~~d~~v~~~t~~FW~~l~e~l~~~~~~~~~---~~~~~~~~~~~  381 (962)
                      +.+..+++.+...+..   .....+..+ .......  +.++...+++||..+++...+.......   ..........+
T Consensus       246 ~~l~~i~~~~~~~~~~---~l~~~l~~l~~~~~~~~--~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (861)
T d2bpta1         246 GCLCKIMSKYYTFMKP---YMEQALYALTIATMKSP--NDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALS  320 (861)
T ss_dssp             HHHHHHHHHHGGGCHH---HHHHTHHHHHHHHTTCS--SHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHH
T ss_pred             HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhcCc--cHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence            5566655555443322   112222222 2333333  6778889999999988764322111000   00111223455


Q ss_pred             HHHHHHHHHHHHhccCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHhhhcCCCCCCCchhhhHHH
Q 002126          382 VFSALLDALLLRAQVDESSFNDDGMVDLPDGLVQFRMNLVELLVDICQLLRSATFIQKVFFGSWGSANVPIPWKEVETKL  461 (962)
Q Consensus       382 ~~~~L~~~l~~k~~~p~~~~~~~~~~d~~d~f~~fR~~~~d~l~~~~~il~~~~~l~~~~~~l~~~~~~~~~W~~~Ea~L  461 (962)
                      .+..++..+..-+..+.++        +.++....|.....++...+..+|.+ ++......+.. ...+.+|...++++
T Consensus       321 ~l~~i~~~l~~~l~~~~~~--------~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~a~  390 (861)
T d2bpta1         321 SIKDVVPNLLNLLTRQNED--------PEDDDWNVSMSAGACLQLFAQNCGNH-ILEPVLEFVEQ-NITADNWRNREAAV  390 (861)
T ss_dssp             HHHHHHHHHHHHTTCCCCC---------CCCCCHHHHHHHHHHHHHHHHHGGG-GHHHHHHHHHH-HTTCSSHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhcc--------ccchhHHHHHHHHHHHHHHHhhcchh-hhhhhcchhhh-hhhhHHHHHHHHHH
Confidence            6666777776666544321        11122234555666777777777654 33333322211 11356799999999


Q ss_pred             HHHHhhhhccccCCCccchhHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHHhhHHHHHh---ChhchHHHHHHHHHhc
Q 002126          462 FALNVVSEVVLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISA---FQTNARPLLLFLAAGI  538 (962)
Q Consensus       462 f~l~~iae~i~~~~~~~~l~~i~~~l~~l~~~~~~~~~~~~~v~~~t~~~~ig~ys~wl~~---~p~~L~~vL~~l~~~l  538 (962)
                      ++++++++....+.....++.++..+.....++...      +|.++ +.++|++++++..   .+.+++.+++.++..+
T Consensus       391 ~~l~~i~~~~~~~~~~~~l~~~l~~l~~~l~d~~~~------vr~~a-~~~l~~l~~~~~~~~~~~~~~~~ll~~l~~~~  463 (861)
T d2bpta1         391 MAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQ------VKETT-AWCIGRIADSVAESIDPQQHLPGVVQACLIGL  463 (861)
T ss_dssp             HHHHHTSSSSCHHHHHHHHHHHHHHHHHGGGCSCHH------HHHHH-HHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHH
T ss_pred             HHHHHHHhhcchhhHHHHHHHHHHHHHHHhcCcchh------hhhHH-HHHHHHHHHHhchhhhhHHhhhhhhHHHHhcc
Confidence            999999887653221111344444444444444422      56655 5999999999875   3568899999999887


Q ss_pred             cc-CchhHHHHHHHHHHHHHhhcccCCCccHHHH----HHHHHHHHhcCCChhhHHHHHHHHHHHhccCCchHHHHHHHH
Q 002126          539 SE-AVSSNACASALRKICEDASALIDEPSNLEIL----MWIGEALEKRHLPLEDEEEVVGAISLILGSVSNKELKNNLLA  613 (962)
Q Consensus       539 ~~-~~~~~~Aa~al~~lc~~c~~~l~~p~~~~~l----~~~~~~l~~~~l~~~~~~~l~eai~~vi~~lp~~e~~~~~l~  613 (962)
                      .+ +.+...++.++..++..+...... ...+.+    ..+.........+...+...+++++.++...+..  ..+++.
T Consensus       464 ~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~i~~~~~~--~~~~~~  540 (861)
T d2bpta1         464 QDHPKVATNCSWTIINLVEQLAEATPS-PIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDT--VAETSA  540 (861)
T ss_dssp             TSCHHHHHHHHHHHHHHHHHHSSSSSC-GGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGG--GHHHHH
T ss_pred             ccChHHHHHHHHHHHHHHHHhhhcccc-hhhHHHhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhHHH--HHHHHH
Confidence            75 568889999999999988765432 122222    2233332233445567888899999999888764  356677


Q ss_pred             HHHHHHHHHHHhhhcccCCCCCCCCchhhHHHhHHHHHHHHhhhhhcccccccCCCCCCCCchHHHHHHHHHHHHHHHHH
Q 002126          614 RLLSSSYEAIGKLIDGDNNHSLIHNPATYTQILSSATRGLYRMGTVFSHLPVPLPTNPAGDDPIFALLRVFWPMLEKLFR  693 (962)
Q Consensus       614 ~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~i~~~l~~~~~~~~~~~~p~~~~~~~i~~~l~~i~~  693 (962)
                      .+.......+.+.+........... ......+.  ......+..+++.....          ..++.+.+++.+...+.
T Consensus       541 ~l~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~l~--~~~~~~l~~~~~~~~~~----------~~~~~~~l~~~l~~~l~  607 (861)
T d2bpta1         541 SISTFVMDKLGQTMSVDENQLTLED-AQSLQELQ--SNILTVLAAVIRKSPSS----------VEPVADMLMGLFFRLLE  607 (861)
T ss_dssp             HHHHHHHHHHHHHTTSCGGGCCHHH-HHHHHHHH--HHHHHHHHHHHHHCGGG----------TGGGHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhhhhhhH-HhHHHHHH--HHHHHHHHHHHhcchhh----------HHHHHHHHHHHHhhhcc
Confidence            7777777777766543311100000 00000011  11122233333332211          22345667777777775


Q ss_pred             hhhccchHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHHHhhhhhcCc--chHHHHHHHHHHHhcCCCCccchHHHHHH
Q 002126          694 SEHMENGNLSTAACRALSLAIQSSGQHFVTLLPQVLDCLSTNFVSFQNH--ECYIRTASVVIEEFGHKDEYGPLFVTTFE  771 (962)
Q Consensus       694 ~~~~~~~~v~e~~c~~~~~~~~~l~~~~~p~l~~~~~~l~~~f~~~~~~--~~~L~l~~~lv~~~g~~~~~~~~l~~l~~  771 (962)
                        -..+..+.+.++.++......+|..+.|+++.++..+........+.  ...+.+++.++...|.  ...+.+..++.
T Consensus       608 --~~~~~~v~~~~l~~l~~l~~~~~~~~~~~l~~i~p~l~~~l~~~~~~v~~~a~~~l~~i~~~~~~--~~~~~~~~i~~  683 (861)
T d2bpta1         608 --KKDSAFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQVDSPVSITAVGFIADISNSLEE--DFRRYSDAMMN  683 (861)
T ss_dssp             --STTGGGTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHTGG--GGHHHHHHHHH
T ss_pred             --cCCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHhCCCCHHHHHHHHHHHHHHHHHhHH--HhHhhHHHHHH
Confidence              33556788889999999999999999999999999888776532111  1124455555555553  23334444433


Q ss_pred             HHhhhHHHHHhhcCCCCCCCCchHHHHHHHHHHHHHhhhHHHHhhchhchHHHHHHHHHhhccCc----hh-------HH
Q 002126          772 RFSQAASVRALNSSYICDQEPDLVEAYTNFASTFVRTSRKEVLAASGALLEVSFQKAAICCTAMH----RG-------AA  840 (962)
Q Consensus       772 ~l~~~~~~~~l~~~~~~~~~pD~~~~~f~l~~~~l~~~p~~~l~~~~~~l~~~l~~~l~~l~~~e----~~-------~~  840 (962)
                      .+.     ..+.   +...++++....+..++.+..+.+..|.    ++++.++.....++...-    .+       ..
T Consensus       684 ~L~-----~~l~---~~~~~~~~k~~~~~~l~~i~~~~~~~~~----~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~  751 (861)
T d2bpta1         684 VLA-----QMIS---NPNARRELKPAVLSVFGDIASNIGADFI----PYLNDIMALCVAAQNTKPENGTLEALDYQIKVL  751 (861)
T ss_dssp             HHH-----HHHH---CTTCCTTHHHHHHHHHHHHHHHHGGGGH----HHHHHHHHHHHHHHTCCCSSSSHHHHHHHHHHH
T ss_pred             HHH-----HHhC---CCCCCHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhCcCCCcccHHHHHHHHHHH
Confidence            322     2333   2356788999999999999998877665    346666666666664321    11       23


Q ss_pred             HHHHHHHHHHHh
Q 002126          841 LAAMSYLSCFLE  852 (962)
Q Consensus       841 ~a~~~fl~~li~  852 (962)
                      .+++..+..++.
T Consensus       752 ~~~~~~~~~i~~  763 (861)
T d2bpta1         752 EAVLDAYVGIVA  763 (861)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            455666666654

PyMOL of d2bpta1

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1w9ca_ a.118.1.19 (A:) Exportin-1 (Xpo1, Crm1) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1w9ca_ a.118.1.19 (A:) Exportin-1 (Xpo1, Crm1) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure