Citrus Sinensis ID: 002136

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-
MILQMSPFISGPTLLSSYRLNPLLFSKRQRCMKLPHWHFNRTKQRFFAVAAAENNKDTLPKTFDFTSEERIYNWWESQGYFKPNFERGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEEPGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKEEEYIVARNADEALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKKFYPTTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLGTAGQDLSLSIERLTANKAFTNKLWNAGKFILQNLPSQNDISRWEILLAYKFDEEECLCKAPLPECWVVSKLHMLIDTVTASYDKYFFGDVGRETYDFFWSDFADWYIEASKARLYRSEYDSDAIIAQAVLLYIFENILKLLHPFMPFVTEELWQSLRKRKEALIVSPWPQTSLPRHMSAIKRFENLQSLTRAIRNARAEYSVEPAKRISASIVANEEVIQYISKEKEVLALLSRLDLLNVHFTESPPGDANQSVHLVASEGLEAYLPLADMVDISAEVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFLRSTVMVTK
cccccccccccccccccccccccHHHHHHHccccccccccHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHcccccccccccccccEEEccccccccccccHHHcHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHcHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHccccccccccccccccccccccccccEEEEEccccEEEEEEEEccccccEEEEcccccccccccEEEEcccccccccccccEEEccccccccccEEcccccccccccccccccccccccHHHHHHHccccccEEEcccccccccccccccccHHHHHHHHHHHHHHccccEEEEccccccccccccccccccccccccccccHHHHHHHHHHHHcccEEEEcccccccHHHHHcccccHHHHHHHHcccccccEEEccccccEEEEcccHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccccccccccEEEEEEccccccccccccccccccHHHHHHHHcHHHHHHHHHcccccccccccHHHHHHHccHHHHHHHHHHHHHHcccccccHHHHHHHHHHcccHHHHccccccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHcccccccHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHcccccccccEEEcccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEEEEcHHHHHHHHHHHHHHHHHcccccccEEccccccccccccEEEEEEccEEEEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccc
cccccccccccccHcccccccHHHHHHHHccccccHHHHHHHHHHHHHHccccccHccccccccHHHHHHHHHHHHHccccccccccccccEEEEEccccccccccHcHHHHHHHHHHHHHHHHHccccEEEcccccHHHHHHHHHHHHHHHHccccHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHcccEEEccEEEEcccccccccccEEEEEEcccccEEEEEEEEcccccEEEEEEccccccccccEEEEccccHHHHHHcccEEEEEEEcccEcEEEEcccccccccccEEEEcccccccccEEcccccccEEEEEcccccEcccccccccccHHHHHHHHHHHHHHcccEEEEEccccccccccccccEEEEccccEEEEEcHHHHHHHHHHHHcccccEccHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEcccccEEEEccccHHccccccccccccccccccccEccHHHHHHHHHHHccccccccHHHHHHHccEcEEEEEHHHHccHHHHHHHHHHHHHccccEcEEEEEccEEccccccccccccccccHHHHHHHccHHHHHHHHHcccccccEEccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHccHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHccHHcccccHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHccccccEEEEcccccccHHccHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEEEccHHHHHHHHHcHHHHHHHcccccEEEEcccccccHHHHHEEEEEccccEEEEEcHccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcEEEcc
milqmspfisgptllssyrlnpllfskrqrcmklphwhfnrtKQRFFAVAAaennkdtlpktfdftseERIYNWWesqgyfkpnfergsdpfvismpppnvtgslhmghAMFVTLEDIMVRYHRmkgrptlwlpgtdhagIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLgascdwtrerftLDEQLSRAVVEAFIRLHEKGLiyqgsymvnwspnlQTAVSDLEveyseepgtlYYIKYRVAgrsdfltiattrpetlfgdvalavnpqdehysqFIGMMAIvpmtygrhvpiisdkyvdkefgtgvlkispghdhndYLLARKlglpilnvmnkdgtlnEVAGLFRGLDRFEARKKLWSDLEETglavkkephtlrvprsqrggevieplvskqwfvTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQlwwghripvwyivgkeEEYIVARNADEALEKAHQKYGknveiyqdpdvldtwfssalwpfstlgwpdvsaddfkkfypttmletgHDILFFWVARMVMMGIEftgsvpfshvylhglirdsqgrkmsktlgnvidpidtiKEFGADALRFTISLGTAGQDLSLSIERLTANKAFTNKLWNAGKFilqnlpsqndiSRWEILLAykfdeeeclckaplpecwvvsKLHMLIDTVTAsydkyffgdvgretYDFFWSDFADWYIEASKARLYRSEYDSDAIIAQAVLLYIFENILKLLHPFMPFVTEELWQSLRKRKEalivspwpqtslprhmSAIKRFENLQSLTRAIRNARAeysvepakrisasiVANEEVIQYISKEKEVLALLSRLDllnvhftesppgdanqsVHLVASEgleaylpladmVDISAEVQRLSKRLSKMQSEYDGLVARLSsskfvekapEDVVRGVQEKAAEAEEKINLTKNRLAFLRSTVMVTK
milqmspfisgptllsSYRLNPLLFSKRQRCMKLPHWHFNRTKQRFFAVAaaennkdtlpktfdftsEERIYNWWESQGYFKPNFERGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAegikrvelsrdeftKRVWEwkekyggtitsqikrlgascDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEEPGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEetglavkkephtlrvprsqrggeviEPLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKEEEYIVARNADEALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKKFYPTTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLGTAGQDLSLSIERLTANKAFTNKLWNAGKFIlqnlpsqndiSRWEILLAYKFDEEECLCKAPLPECWVVSKLHMLIDTVTASYDKYFFGDVGRETYDFFWSDFADWYIEASKARLYRSEYDSDAIIAQAVLLYIFENILKLLHPFMPFVTEELWQSLRKRKEAlivspwpqtslprhMSAIKRFENLQSLTRAIRNAraeysvepakrisasivaNEEVIQYISKEKEVLALLSRLDLLNVHFTESPPGDANQSVHLVASEGLEAYLPLADMVDISAEVQRLSKRLSKMQSEYDGLVARlssskfvekapeDVVRGVQEKAAeaeekinltknrlaflrstvmvtk
MILQMSPFISGPTLLSSYRLNPLLFSKRQRCMKLPHWHFNRTKQRFFAVAAAENNKDTLPKTFDFTSEERIYNWWESQGYFKPNFERGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEEPGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKEEEYIVARNADEALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKKFYPTTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLGTAGQDLSLSIERLTANKAFTNKLWNAGKFILQNLPSQNDISRWEILLAYKFDEEECLCKAPLPECWVVSKLHMLIDTVTASYDKYFFGDVGRETYDFFWSDFADWYIEASKARLYRSEYDSDAIIAQAVLLYIFENILKLLHPFMPFVTEELWQSLRKRKEALIVSPWPQTSLPRHMSAIKRFENLQSLTRAIRNARAEYSVEPAKRISASIVANEEVIQYISKEKEVLALLSRLDLLNVHFTESPPGDANQSVHLVASEGLEAYLPLADMVDISAEVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFLRSTVMVTK
*******FISGPTLLSSYRLNPLLFSKRQRCMKLPHWHFNRTKQRFFAVAAAENNKDTLPKTFDFTSEERIYNWWESQGYFKPNFERGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEEPGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAV***************GEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKEEEYIVARNADEALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKKFYPTTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLGTAGQDLSLSIERLTANKAFTNKLWNAGKFILQNLPSQNDISRWEILLAYKFDEEECLCKAPLPECWVVSKLHMLIDTVTASYDKYFFGDVGRETYDFFWSDFADWYIEASKARLYRSEYDSDAIIAQAVLLYIFENILKLLHPFMPFVTEELWQSLRKRKEALIVSPWPQTSLPRHMSAIKRFENLQSLTRAIRNARAEYSVEPAKRISASIVANEEVIQYISKEKEVLALLSRLDLLNVHFTE*********VHLVASEGLEAYLPLADMVDISAEV*******************************************************LAFL********
*********SGPTLLSSYRLNPLLFSKR************************************FTSEERIYNWWESQGYFKPNFERGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEEPGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKEEEYIVARNADEALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKKFYPTTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLGTAGQDLSLSIERLTANKAFTNKLWNAGKFILQNLPSQNDISRWEILLAYKFDEEECLCKAPLPECWVVSKLHMLIDTVTASYDKYFFGDVGRETYDFFWSDFADWYIEASKARLYR**YDSDAIIAQAVLLYIFENILKLLHPFMPFVTEELWQSLRKRKEALIVSPWPQTSLPRHMSAIKRFENLQSLTRAIRNARAEYSVEPAKRISASIVANEEVIQYISKEKEVLALLSRLDLLNVHFTESP*******VHLVASEGLEAYLPLADMVDISAEVQRLSKRLSKMQSEYD**V*RLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFL*S******
MILQMSPFISGPTLLSSYRLNPLLFSKRQRCMKLPHWHFNRTKQRFFAVAAAENNKDTLPKTFDFTSEERIYNWWESQGYFKPNFERGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEEPGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKEEEYIVARNADEALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKKFYPTTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLGTAGQDLSLSIERLTANKAFTNKLWNAGKFILQNLPSQNDISRWEILLAYKFDEEECLCKAPLPECWVVSKLHMLIDTVTASYDKYFFGDVGRETYDFFWSDFADWYIEASKARLYRSEYDSDAIIAQAVLLYIFENILKLLHPFMPFVTEELWQSLRKRKEALIVSPWPQTSLPRHMSAIKRFENLQSLTRAIRNARAEYSVEPAKRISASIVANEEVIQYISKEKEVLALLSRLDLLNVHFTESPPGDANQSVHLVASEGLEAYLPLADMVDISAEVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFLRSTVMVTK
**LQMSPFISGPTLLSSYRLNPLLFSKRQRCMKLPHWHFNRTKQRFFAVAAA****DTLPKTFDFTSEERIYNWWESQGYFKPNFERGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEEPGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKEEEYIVARNADEALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKKFYPTTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLGTAGQDLSLSIERLTANKAFTNKLWNAGKFILQNLPSQNDISRWEILLAYKFDEEECLCKAPLPECWVVSKLHMLIDTVTASYDKYFFGDVGRETYDFFWSDFADWYIEASKARLYRSEYDSDAIIAQAVLLYIFENILKLLHPFMPFVTEELWQSLRKRKEALIVSPWPQTSLPRHMSAIKRFENLQSLTRAIRNARAEYSVEPAKRISASIVANEEVIQYISKEKEVLALLSRLDLLNVHFTESPPGDANQSVHLVASEGLEAYLPLADMVDISAEVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFLRSTVMVT*
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MILQMSPFISGPTLLSSYRLNPLLFSKRQRCMKLPHWHFNRTKQRFFAVAAAENNKDTLPKTFDFTSEERIYNWWESQGYFKPNFERGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEEPGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKEEEYIVARNADEALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKKFYPTTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLGTAGQDLSLSIERLTANKAFTNKLWNAGKFILQNLPSQNDISRWEILLAYKFDEEECLCKAPLPECWVVSKLHMLIDTVTASYDKYFFGDVGRETYDFFWSDFADWYIEASKARLYRSEYDSDAIIAQAVLLYIFENILKLLHPFMPFVTEELWQSLRKRKEALIVSPWPQTSLPRHMSAIKRFENLQSLTRAIRNARAEYSVEPAKRISASIVANEEVIQYISKEKEVLALLSRLDLLNVHFTESPPGDANQSVHLVASEGLEAYLPLADxxxxxxxxxxxxxxxxxxxxxxxxxxxxLSSSKFVEKAPEDVxxxxxxxxxxxxxxxxxxxxxxxxxxxxVMVTK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query961 2.2.26 [Sep-21-2011]
Q3AF87878 Valine--tRNA ligase OS=Ca yes no 0.900 0.985 0.472 0.0
Q46IA7933 Valine--tRNA ligase OS=Pr yes no 0.919 0.947 0.457 0.0
Q97GG8881 Valine--tRNA ligase OS=Cl yes no 0.905 0.987 0.453 0.0
Q5N3J4909 Valine--tRNA ligase OS=Sy yes no 0.906 0.958 0.448 0.0
Q72ZW8881 Valine--tRNA ligase OS=Ba yes no 0.906 0.988 0.450 0.0
Q6HD68881 Valine--tRNA ligase OS=Ba yes no 0.906 0.988 0.449 0.0
Q633Y6881 Valine--tRNA ligase OS=Ba yes no 0.906 0.988 0.449 0.0
Q817R6881 Valine--tRNA ligase OS=Ba yes no 0.906 0.988 0.448 0.0
Q81LD3881 Valine--tRNA ligase OS=Ba yes no 0.906 0.988 0.448 0.0
Q5KWL3880 Valine--tRNA ligase OS=Ge yes no 0.902 0.985 0.450 0.0
>sp|Q3AF87|SYV_CARHZ Valine--tRNA ligase OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=valS PE=3 SV=1 Back     alignment and function desciption
 Score =  827 bits (2137), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 426/902 (47%), Positives = 589/902 (65%), Gaps = 37/902 (4%)

Query: 58  TLPKTFDFTSEERI-YNWWESQGYFKPNFERGSDPFVISMPPPNVTGSLHMGHAMFVTLE 116
           TLP  +     ER  Y +WE  G+F    +   +PF I MPPPNVTG LHMGHA+  T++
Sbjct: 4   TLPSVYSPQEVERKWYKYWEENGFFHTEPDE-REPFCIVMPPPNVTGQLHMGHALDNTMQ 62

Query: 117 DIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEK 176
           DI+ RY RM+G  TLWLPGTDHAGIATQ  VE+ L  EG+ + +L R++F +RVW WKE 
Sbjct: 63  DILARYKRMQGFNTLWLPGTDHAGIATQAKVEEELRKEGLTKDDLGREKFLERVWAWKEN 122

Query: 177 YGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQ 236
           YG  IT Q++ LGASCDW RERFTLDE  S AV E F+RL+EKGLIY+  Y+ NW P+ +
Sbjct: 123 YGNRITEQLRTLGASCDWKRERFTLDEGCSEAVKEVFLRLYEKGLIYRDYYITNWCPHCK 182

Query: 237 TAVSDLEVEYSEEPGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFI 296
           T +SD+EVE+ E  G LYYI Y +   S +LT+ATTRPET+ GD A+AV+P+DE Y + I
Sbjct: 183 TTISDIEVEHLEREGKLYYINYPLEDGSGYLTVATTRPETMLGDTAVAVHPEDERYRELI 242

Query: 297 GMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDG 356
           G   I+P+   R +P+I+D+YVDKEFGTG +KI+P HD ND+ +  +  LP + V++ D 
Sbjct: 243 GKNVILPLV-NRPIPVIADEYVDKEFGTGAVKITPAHDPNDFEVGLRHKLPQVVVLDDDA 301

Query: 357 TLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWF 416
            +NE AG +RGLDR+EARKK+  DL++ GL VK+E  T  V    R   VIEP +SKQWF
Sbjct: 302 VMNENAGKYRGLDRYEARKKIVEDLKDLGLLVKEEEITHSVGHCYRCDTVIEPRLSKQWF 361

Query: 417 VTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGK 476
           V M+PLAE A+ A   G++  +PERF KIY +WL NI+DWCISRQLWWGHRIPVWY   +
Sbjct: 362 VKMKPLAEPAIEAALTGKVKFVPERFTKIYLNWLYNIRDWCISRQLWWGHRIPVWY-CDE 420

Query: 477 EEEYIVARNADEALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKK 536
             E I +R   ++  K      ++ +++QDPDVLDTWFSSALWPFSTLGWP  + ++ K 
Sbjct: 421 CGEVIPSREEVKSCPKC-----QSTKVHQDPDVLDTWFSSALWPFSTLGWPQ-NTEELKY 474

Query: 537 FYPTTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVID 596
           +YPT++L TG DI+FFWVARM+ MG+EF   VPF  V +HGL+ D+QGRKMSK+LGN +D
Sbjct: 475 YYPTSVLVTGRDIIFFWVARMLFMGLEFMKEVPFKEVLIHGLVLDAQGRKMSKSLGNGVD 534

Query: 597 PIDTIKEFGADALRFTISLG-TAGQDLSLSIERLTANKAFTNKLWNAGKFILQNLP--SQ 653
           P++ I   GAD+LRF +  G T G DL    ERL   + F NKLWNA +F+L NL   + 
Sbjct: 535 PVEVIASHGADSLRFMLVTGNTPGNDLRFHFERLDGARNFANKLWNASRFVLMNLEGFTP 594

Query: 654 NDISRWEILLAYKFDEEECLCKAPLPECWVVSKLHMLIDTVTASYDKYFFGDVGRETYDF 713
             I + E+ LA +               W++++L+ +ID VTA  D+Y  G+  RE Y+F
Sbjct: 595 QGIKQEELTLADR---------------WILARLNAVIDRVTAFLDEYELGEAARELYEF 639

Query: 714 FWSDFADWYIEASKARLYRSEYDSDAIIAQAVLLYIFENILKLLHPFMPFVTEELWQSLR 773
            W +F DWY+E +K RLY      D   A+ VL  + +  L+LLHPFMPF+TEE+WQ L 
Sbjct: 640 IWDEFCDWYVELTKPRLYGKMPGGDT--AREVLYAVLKTTLELLHPFMPFITEEIWQRLP 697

Query: 774 KRKEALIVSPWPQTSLP-RHMSAIKRFENLQSLTRAIRNARAEYSVEPAKRISASIV-AN 831
              + ++++PWP+      +  A+K+  +L  + R IR  RAE +V PAKR    +V A+
Sbjct: 698 HEGKTIMLAPWPKGRADYENPEAVKQMSSLMEVIREIRRLRAEVNVPPAKRGEVILVTAD 757

Query: 832 EEVIQYISKEKEVLALLSRLDLLNVHFTESPPGDANQSVHLVASEGLEAYLPLADMVDIS 891
           E++ + +++    +A L++ +   V   E P G    ++  VA+ G+  YLPL D++D+ 
Sbjct: 758 EQLTRLLNENAWAIAALAQSEPRVVPKMEVPQG----ALTGVAA-GVTIYLPLKDLIDLE 812

Query: 892 AEVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLA 951
            E +RL+K L K+ +E + L  +L++  F+ KAP +VV   +EK      +  + + R+ 
Sbjct: 813 KEKERLNKELKKVLAEIERLNQKLNNPGFLAKAPAEVVNKEREKLTAFYREKEVLEQRIG 872

Query: 952 FL 953
            L
Sbjct: 873 ML 874
Catalyzes the attachment of valine to tRNA(Val). As ValRS can inadvertently accommodate and process structurally similar amino acids such as threonine, to avoid such errors, it has a "posttransfer" editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA-dependent manner.
Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) (taxid: 246194)
EC: 6EC: .EC: 1EC: .EC: 1EC: .EC: 9
>sp|Q46IA7|SYV_PROMT Valine--tRNA ligase OS=Prochlorococcus marinus (strain NATL2A) GN=valS PE=3 SV=1 Back     alignment and function description
>sp|Q97GG8|SYV_CLOAB Valine--tRNA ligase OS=Clostridium acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 / LMG 5710 / VKM B-1787) GN=valS PE=3 SV=1 Back     alignment and function description
>sp|Q5N3J4|SYV_SYNP6 Valine--tRNA ligase OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=valS PE=3 SV=1 Back     alignment and function description
>sp|Q72ZW8|SYV_BACC1 Valine--tRNA ligase OS=Bacillus cereus (strain ATCC 10987) GN=valS PE=3 SV=1 Back     alignment and function description
>sp|Q6HD68|SYV_BACHK Valine--tRNA ligase OS=Bacillus thuringiensis subsp. konkukian (strain 97-27) GN=valS PE=3 SV=1 Back     alignment and function description
>sp|Q633Y6|SYV_BACCZ Valine--tRNA ligase OS=Bacillus cereus (strain ZK / E33L) GN=valS PE=3 SV=1 Back     alignment and function description
>sp|Q817R6|SYV_BACCR Valine--tRNA ligase OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=valS PE=3 SV=1 Back     alignment and function description
>sp|Q81LD3|SYV_BACAN Valine--tRNA ligase OS=Bacillus anthracis GN=valS PE=3 SV=1 Back     alignment and function description
>sp|Q5KWL3|SYV_GEOKA Valine--tRNA ligase OS=Geobacillus kaustophilus (strain HTA426) GN=valS PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query961
359487063959 PREDICTED: valyl-tRNA synthetase-like [V 0.985 0.987 0.856 0.0
359488299958 PREDICTED: valyl-tRNA synthetase-like [V 0.985 0.988 0.854 0.0
296085363963 unnamed protein product [Vitis vinifera] 0.985 0.983 0.851 0.0
224065184951 predicted protein [Populus trichocarpa] 0.951 0.961 0.861 0.0
356563701971 PREDICTED: valyl-tRNA synthetase-like [G 0.980 0.970 0.813 0.0
449456259923 PREDICTED: valine--tRNA ligase-like [Cuc 0.949 0.988 0.832 0.0
334187718974 valyl-tRNA synthetase [Arabidopsis thali 0.953 0.940 0.829 0.0
218199135958 hypothetical protein OsI_25003 [Oryza sa 0.972 0.975 0.793 0.0
222636480960 hypothetical protein OsJ_23192 [Oryza sa 0.972 0.973 0.790 0.0
242043012977 hypothetical protein SORBIDRAFT_02g00365 0.935 0.920 0.796 0.0
>gi|359487063|ref|XP_002270806.2| PREDICTED: valyl-tRNA synthetase-like [Vitis vinifera] Back     alignment and taxonomy information
 Score = 1700 bits (4403), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 825/963 (85%), Positives = 887/963 (92%), Gaps = 16/963 (1%)

Query: 9   ISGPTLLSS---YRLNPLLFSKRQRCMKLPHWHFNRTKQRFFAVAAAENNKDTLP---KT 62
            S P+LLSS   YRLNPLLFS R   ++L H H    K RFFAVAA EN+  T P   K+
Sbjct: 3   FSTPSLLSSCSAYRLNPLLFSHRCLRIRLSHSHL---KPRFFAVAARENDVFTSPETAKS 59

Query: 63  FDFTSEERIYNWWESQGYFKPNFERGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRY 122
           FDFTSEERIYNWW+SQGYFKPN +RGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRY
Sbjct: 60  FDFTSEERIYNWWDSQGYFKPNLDRGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRY 119

Query: 123 HRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKYGGTIT 182
           HRMKGRPTLW+PGTDHAGIATQLVVE+MLA+EGIKR ELSRDEFTKRVWEWKEKYGGTIT
Sbjct: 120 HRMKGRPTLWIPGTDHAGIATQLVVERMLASEGIKRAELSRDEFTKRVWEWKEKYGGTIT 179

Query: 183 SQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDL 242
           +QIKRLGASCDWTRE FTLDE+LS AV+EAF+RLHE+GLIYQGSYMVNWSPNLQTAVSDL
Sbjct: 180 NQIKRLGASCDWTREHFTLDEKLSWAVIEAFVRLHERGLIYQGSYMVNWSPNLQTAVSDL 239

Query: 243 EVEYSEEPGTLYYIKYRVAG--RSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGMMA 300
           EVEYSEEPGTLYYIKYRVAG  +SD+LTIATTRPETLFGD A+AV+PQD+ YS++IG MA
Sbjct: 240 EVEYSEEPGTLYYIKYRVAGGSKSDYLTIATTRPETLFGDTAIAVHPQDDRYSRYIGRMA 299

Query: 301 IVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTLNE 360
           IVPMT+GRHVPIISD+YVDK+FGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTLNE
Sbjct: 300 IVPMTFGRHVPIISDRYVDKDFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTLNE 359

Query: 361 VAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTME 420
           VAGL+RGLDRFEARKKLW DLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTME
Sbjct: 360 VAGLYRGLDRFEARKKLWLDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTME 419

Query: 421 PLAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGK--EE 478
           PLAEKAL AVE+GELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGK  EE
Sbjct: 420 PLAEKALQAVERGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKDCEE 479

Query: 479 EYIVARNADEALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKKFY 538
           EYIVARNA+EALEKA +KYGK+VEIYQ+PDVLDTWFSSALWPFSTLGWPDVS  DFKKFY
Sbjct: 480 EYIVARNANEALEKAQEKYGKDVEIYQEPDVLDTWFSSALWPFSTLGWPDVSTQDFKKFY 539

Query: 539 PTTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPI 598
           PTT+LETGHDILFFWVARMVMMGIEFTG+VPFS+VYLHGLIRDSQGRKMSKTLGNVIDPI
Sbjct: 540 PTTVLETGHDILFFWVARMVMMGIEFTGAVPFSYVYLHGLIRDSQGRKMSKTLGNVIDPI 599

Query: 599 DTIKEFGADALRFTISLGTAGQDLSLSIERLTANKAFTNKLWNAGKFILQNLPSQNDISR 658
           DTIKEFG DALRFT++LGTAGQDL+LS ERLT+NKAFTNKLWNAGKF+LQNLPSQ+DIS 
Sbjct: 600 DTIKEFGTDALRFTLALGTAGQDLNLSTERLTSNKAFTNKLWNAGKFVLQNLPSQSDISA 659

Query: 659 WEILLAYKFDEEECLCKAPLPECWVVSKLHMLIDTVTASYDKYFFGDVGRETYDFFWSDF 718
           WE +LA KFD+EE L + PLPECWVVSKLH LID VT SYDKYFFGDVGRETYDFFW DF
Sbjct: 660 WETILACKFDKEEALLRLPLPECWVVSKLHCLIDMVTTSYDKYFFGDVGRETYDFFWGDF 719

Query: 719 ADWYIEASKARLYRSEYDSDAIIAQAVLLYIFENILKLLHPFMPFVTEELWQSLRKRKEA 778
           ADWYIEASKARLY S   S   +AQAVLLY+FENILK+LHPFMPFVTE LWQ+L  RKEA
Sbjct: 720 ADWYIEASKARLYHSGGHS---VAQAVLLYVFENILKMLHPFMPFVTEALWQALPNRKEA 776

Query: 779 LIVSPWPQTSLPRHMSAIKRFENLQSLTRAIRNARAEYSVEPAKRISASIVANEEVIQYI 838
           L+ S WPQTSLP H S+IK+FENLQSLTRAIRNARAEYSVEPAKRISASIVA  EVIQYI
Sbjct: 777 LMNSSWPQTSLPMHASSIKKFENLQSLTRAIRNARAEYSVEPAKRISASIVAGNEVIQYI 836

Query: 839 SKEKEVLALLSRLDLLNVHFTESPPGDANQSVHLVASEGLEAYLPLADMVDISAEVQRLS 898
           SKEKEVLALLSRLDL NVHFT+SPPGDAN SVHLVASEGLEAYLPL+DM+D+SAEV+RLS
Sbjct: 837 SKEKEVLALLSRLDLQNVHFTDSPPGDANLSVHLVASEGLEAYLPLSDMIDVSAEVERLS 896

Query: 899 KRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFLRSTVM 958
           KRLSKMQ E+D L ARLSS KFVEKAPE++V GV+EKAAEAEEKI LTKNRLAFL+ST +
Sbjct: 897 KRLSKMQEEFDRLAARLSSPKFVEKAPEEIVSGVREKAAEAEEKITLTKNRLAFLKSTAV 956

Query: 959 VTK 961
           V+K
Sbjct: 957 VSK 959

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359488299|ref|XP_003633739.1| PREDICTED: valyl-tRNA synthetase-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|296085363|emb|CBI29095.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224065184|ref|XP_002301705.1| predicted protein [Populus trichocarpa] gi|222843431|gb|EEE80978.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356563701|ref|XP_003550098.1| PREDICTED: valyl-tRNA synthetase-like [Glycine max] Back     alignment and taxonomy information
>gi|449456259|ref|XP_004145867.1| PREDICTED: valine--tRNA ligase-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|334187718|ref|NP_568337.4| valyl-tRNA synthetase [Arabidopsis thaliana] gi|332004946|gb|AED92329.1| valyl-tRNA synthetase [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|218199135|gb|EEC81562.1| hypothetical protein OsI_25003 [Oryza sativa Indica Group] Back     alignment and taxonomy information
>gi|222636480|gb|EEE66612.1| hypothetical protein OsJ_23192 [Oryza sativa Japonica Group] Back     alignment and taxonomy information
>gi|242043012|ref|XP_002459377.1| hypothetical protein SORBIDRAFT_02g003650 [Sorghum bicolor] gi|241922754|gb|EER95898.1| hypothetical protein SORBIDRAFT_02g003650 [Sorghum bicolor] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query961
TIGR_CMR|CBU_0808920 CBU_0808 "valyl-tRNA synthetas 0.599 0.626 0.548 4.3e-217
TIGR_CMR|BA_4690881 BA_4690 "valyl-tRNA synthetase 0.906 0.988 0.449 4.6e-215
UNIPROTKB|Q9KP73953 valS "Valine--tRNA ligase" [Vi 0.318 0.321 0.488 2.5e-192
TIGR_CMR|VC_2503953 VC_2503 "valyl-tRNA synthetase 0.318 0.321 0.488 2.5e-192
UNIPROTKB|P07118951 valS "valyl-tRNA synthetase" [ 0.318 0.321 0.507 9.6e-191
UNIPROTKB|P67599876 valS "Valine--tRNA ligase" [My 0.691 0.759 0.437 2.1e-180
TIGR_CMR|CHY_0334878 CHY_0334 "valyl-tRNA synthetas 0.620 0.678 0.541 4.5e-178
TIGR_CMR|CJE_0866870 CJE_0866 "valyl-tRNA synthetas 0.668 0.737 0.446 8.3e-177
CGD|CAL00031051119 VAS1 [Candida albicans (taxid: 0.378 0.325 0.465 3.5e-174
FB|FBgn00270791049 Aats-val "Valyl-tRNA synthetas 0.536 0.491 0.486 2.9e-172
TIGR_CMR|CBU_0808 CBU_0808 "valyl-tRNA synthetase" [Coxiella burnetii RSA 493 (taxid:227377)] Back     alignment and assigned GO terms
 Score = 1680 (596.4 bits), Expect = 4.3e-217, Sum P(2) = 4.3e-217
 Identities = 322/587 (54%), Positives = 421/587 (71%)

Query:    59 LPKTFDFTSEERIY-NWWESQGYFKPNFERGSDPFVISMPPPNVTGSLHMGHAMFVTLED 117
             + KT+D  + E+ + ++WE +   KP  + GS P+ I +PPPNVTG+LHMGH    TL D
Sbjct:     1 MEKTYDPKAIEKKWADYWEKRQLSKPTAQ-GS-PYCIMLPPPNVTGTLHMGHGFQQTLMD 58

Query:   118 IMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKY 177
              ++RYHRMKG  TLW  GTDHAGIATQ+VVE+ LA E + R +L R  F KRVWEW+E+ 
Sbjct:    59 TLIRYHRMKGERTLWQGGTDHAGIATQMVVEQQLAQEDLTREDLGRQAFIKRVWEWRERS 118

Query:   178 GGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQT 237
             GG IT Q++RLG S DW+RERF++DE LSRA  EAFIRLH +GLIY+G  +VNW P L T
Sbjct:   119 GGKITHQMRRLGVSIDWSRERFSMDEGLSRATTEAFIRLHHEGLIYRGKRLVNWDPKLNT 178

Query:   238 AVSDLEVEYSEEPGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIG 297
             A+SDLEV   E  G L++I+Y +A  S  L IATTRPETL GDVA+AV+PQDE Y  F+G
Sbjct:   179 AISDLEVVTEEVEGHLWHIRYPLAEGSGHLIIATTRPETLLGDVAIAVHPQDERYQPFVG 238

Query:   298 MMAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGT 357
                 +P+T  R +P+I+D+ VDKEFGTG LKI+PGHD NDY + ++  LP++N++  +G 
Sbjct:   239 KKVRLPLT-DRTIPVIADEAVDKEFGTGSLKITPGHDFNDYEIGQRHQLPLINILTSEGY 297

Query:   358 LNE-VAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWF 416
             LNE V   +RGL+RFEARKK+ +DL+   L  K EP+ + VPR +R G +IEPL++ QWF
Sbjct:   298 LNENVPEPYRGLERFEARKKIIADLQRENLLEKTEPYRVPVPRGERSGVIIEPLLTDQWF 357

Query:   417 VTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGK 476
             + ME LA+ A+ AVE GEL  +P+ +EK Y  WLSNI+DWCISRQLWWGHR+PVWY   +
Sbjct:   358 IKMEALAKPAMEAVESGELKFIPKNWEKTYLQWLSNIQDWCISRQLWWGHRLPVWY--DE 415

Query:   477 EEEYIVARNADEALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKK 536
             E+   V R+ +E L+K H     +V++ Q+ DVLDTWFS++LWPF+TLGWP+   + FK 
Sbjct:   416 EKNSYVGRSREEILKKYH--LSPDVKLQQETDVLDTWFSASLWPFATLGWPE-KTESFKT 472

Query:   537 FYPTTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVID 596
             FYPT +L TG DI+FFWVARMVMMG++ T  +PF  VY+HGLIRDSQGRKMSK+ GNVID
Sbjct:   473 FYPTQVLVTGFDIIFFWVARMVMMGLKLTHKIPFHSVYIHGLIRDSQGRKMSKSKGNVID 532

Query:   597 PIDTIKEFGADALRFTISLGTAGQDLSLSIERLTANKAFTNKLWNAG 643
             PID I     DAL    +       ++ +IE++T  K F N + + G
Sbjct:   533 PIDIIDGISLDALIEKRTHALLQPKMAKTIEKMT-RKEFPNGIASFG 578
GO:0004832 "valine-tRNA ligase activity" evidence=ISS
GO:0006438 "valyl-tRNA aminoacylation" evidence=ISS
TIGR_CMR|BA_4690 BA_4690 "valyl-tRNA synthetase" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms
UNIPROTKB|Q9KP73 valS "Valine--tRNA ligase" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] Back     alignment and assigned GO terms
TIGR_CMR|VC_2503 VC_2503 "valyl-tRNA synthetase" [Vibrio cholerae O1 biovar El Tor (taxid:686)] Back     alignment and assigned GO terms
UNIPROTKB|P07118 valS "valyl-tRNA synthetase" [Escherichia coli K-12 (taxid:83333)] Back     alignment and assigned GO terms
UNIPROTKB|P67599 valS "Valine--tRNA ligase" [Mycobacterium tuberculosis (taxid:1773)] Back     alignment and assigned GO terms
TIGR_CMR|CHY_0334 CHY_0334 "valyl-tRNA synthetase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
TIGR_CMR|CJE_0866 CJE_0866 "valyl-tRNA synthetase" [Campylobacter jejuni RM1221 (taxid:195099)] Back     alignment and assigned GO terms
CGD|CAL0003105 VAS1 [Candida albicans (taxid:5476)] Back     alignment and assigned GO terms
FB|FBgn0027079 Aats-val "Valyl-tRNA synthetase" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q99TJ8SYV_STAAN6, ., 1, ., 1, ., 90.43010.89070.9771yesno
Q3A253SYV_PELCD6, ., 1, ., 1, ., 90.44490.89280.9543yesno
Q9K8G8SYV_BACHD6, ., 1, ., 1, ., 90.44280.89380.9761yesno
Q82ZW6SYV_ENTFA6, ., 1, ., 1, ., 90.43910.88960.9715yesno
Q05873SYV_BACSU6, ., 1, ., 1, ., 90.43560.90840.9920yesno
Q7A0P4SYV_STAAW6, ., 1, ., 1, ., 90.43010.89070.9771yesno
Q5N3J4SYV_SYNP66, ., 1, ., 1, ., 90.44890.90630.9581yesno
Q46IA7SYV_PROMT6, ., 1, ., 1, ., 90.45790.91980.9474yesno
Q6MQK8SYV_BDEBA6, ., 1, ., 1, ., 90.43910.89380.9608yesno
Q72ZW8SYV_BACC16, ., 1, ., 1, ., 90.45030.90630.9886yesno
Q9X2D7SYV_THEMA6, ., 1, ., 1, ., 90.45870.87610.9734yesno
Q7UZI3SYV_PROMP6, ., 1, ., 1, ., 90.43480.91460.9575yesno
Q817R6SYV_BACCR6, ., 1, ., 1, ., 90.44810.90630.9886yesno
Q6HD68SYV_BACHK6, ., 1, ., 1, ., 90.44920.90630.9886yesno
Q8RHK3SYV_FUSNN6, ., 1, ., 1, ., 90.43910.89900.9740yesno
Q8XJ42SYV_CLOPE6, ., 1, ., 1, ., 90.44480.90210.9852yesno
Q5HFA8SYV_STAAC6, ., 1, ., 1, ., 90.43010.89070.9771yesno
Q7V9I9SYV_PROMA6, ., 1, ., 1, ., 90.44190.92290.9506yesno
Q7U3N4SYV_SYNPX6, ., 1, ., 1, ., 90.44910.91670.9638yesno
Q3Z9C5SYV_DEHE16, ., 1, ., 1, ., 90.44850.87920.9602yesno
A8Z2I4SYV_STAAT6, ., 1, ., 1, ., 90.43010.89070.9771yesno
Q67SJ2SYV_SYMTH6, ., 1, ., 1, ., 90.43960.89800.9473yesno
Q8YX97SYV_NOSS16, ., 1, ., 1, ., 90.45320.85950.8145yesno
Q92BG2SYV_LISIN6, ., 1, ., 1, ., 90.43570.89900.9795yesno
Q3ZZG9SYV_DEHSC6, ., 1, ., 1, ., 90.43890.88240.9636yesno
Q6GG42SYV_STAAR6, ., 1, ., 1, ., 90.43010.89070.9771yesno
Q3AF87SYV_CARHZ6, ., 1, ., 1, ., 90.47220.90010.9851yesno
Q891R5SYV_CLOTE6, ., 1, ., 1, ., 90.41940.90940.9931yesno
Q8EPN2SYV_OCEIH6, ., 1, ., 1, ., 90.42600.90630.9864yesno
A5ITI8SYV_STAA96, ., 1, ., 1, ., 90.43010.89070.9771yesno
A7HJX5SYV_FERNB6, ., 1, ., 1, ., 90.44480.87200.9665yesno
Q81LD3SYV_BACAN6, ., 1, ., 1, ., 90.44810.90630.9886yesno
Q7TUI9SYV_PROMM6, ., 1, ., 1, ., 90.44690.91250.9440yesno
Q8DIS8SYV_THEEB6, ., 1, ., 1, ., 90.45160.88340.9299yesno
Q97GG8SYV_CLOAB6, ., 1, ., 1, ., 90.45300.90530.9875yesno
Q73MZ2SYV_TREDE6, ., 1, ., 1, ., 90.44480.91360.9658yesno
A8F8Q3SYV_THELT6, ., 1, ., 1, ., 90.44200.87920.9814yesno
Q8RBN5SYV_THETN6, ., 1, ., 1, ., 90.44950.90010.9840yesno
B7GH39SYV_ANOFW6, ., 1, ., 1, ., 90.44340.90320.992yesno
A9BIJ7SYV_PETMO6, ., 1, ., 1, ., 90.45080.87400.9610yesno
A6U2D1SYV_STAA26, ., 1, ., 1, ., 90.43010.89070.9771yesno
Q633Y6SYV_BACCZ6, ., 1, ., 1, ., 90.44920.90630.9886yesno
A6QHJ8SYV_STAAE6, ., 1, ., 1, ., 90.43010.89070.9771yesno
Q2FXR8SYV_STAA86, ., 1, ., 1, ., 90.43010.89070.9771yesno
Q5KWL3SYV_GEOKA6, ., 1, ., 1, ., 90.45070.90210.9852yesno
Q6G8R2SYV_STAAS6, ., 1, ., 1, ., 90.43010.89070.9771yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
4th Layer6.1.1.90.914
3rd Layer6.1.10.921

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
fgenesh4_pg.C_LG_II002297
aminoacyl-tRNA ligase (EC-6.1.1.9) (951 aa)
(Populus trichocarpa)
Predicted Functional Partners:
gw1.VII.52.1
branched-chain amino acid aminotransferase (EC-2.6.1.42) (338 aa)
     •• 0.919
estExt_Genewise1_v1.C_LG_II1818
hypothetical protein (319 aa)
     •• 0.915
fgenesh4_pm.C_LG_IX000386
hypothetical protein (339 aa)
     •• 0.914
gw1.1161.2.1
hypothetical protein (342 aa)
     •• 0.911
eugene3.00180323
aminodeoxychorismate lyase (EC-4.1.3.38) (295 aa)
     •• 0.910
estExt_fgenesh4_pm.C_LG_XI0275
aminodeoxychorismate lyase (EC-4.1.3.38) (339 aa)
     •  0.899
eugene3.00031274
aminoacyl-tRNA ligase (EC-6.1.1.2) (404 aa)
   •  • 0.799
gw1.28.724.1
histidine-tRNA ligase (EC-6.1.1.21) (441 aa)
•     • 0.783
eugene3.114390001
Predicted protein (351 aa)
      • 0.756
gw1.VIII.2106.1
threonine-tRNA ligase (EC-6.1.1.3) (669 aa)
•  •  • 0.748

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query961
PLN02943958 PLN02943, PLN02943, aminoacyl-tRNA ligase 0.0
PRK05729874 PRK05729, valS, valyl-tRNA synthetase; Reviewed 0.0
COG0525877 COG0525, ValS, Valyl-tRNA synthetase [Translation, 0.0
TIGR00422861 TIGR00422, valS, valyl-tRNA synthetase 0.0
PTZ00419995 PTZ00419, PTZ00419, valyl-tRNA synthetase-like pro 0.0
PRK14900 1052 PRK14900, valS, valyl-tRNA synthetase; Provisional 0.0
PLN023811066 PLN02381, PLN02381, valyl-tRNA synthetase 0.0
pfam00133606 pfam00133, tRNA-synt_1, tRNA synthetases class I ( 0.0
PRK13208800 PRK13208, valS, valyl-tRNA synthetase; Reviewed 0.0
COG0060933 COG0060, IleS, Isoleucyl-tRNA synthetase [Translat 1e-119
TIGR00392861 TIGR00392, ileS, isoleucyl-tRNA synthetase 1e-116
cd00817382 cd00817, ValRS_core, catalytic core domain of valy 1e-114
PRK06039975 PRK06039, ileS, isoleucyl-tRNA synthetase; Reviewe 1e-101
cd00817382 cd00817, ValRS_core, catalytic core domain of valy 9e-85
PRK05743912 PRK05743, ileS, isoleucyl-tRNA synthetase; Reviewe 7e-84
PRK13804961 PRK13804, ileS, isoleucyl-tRNA synthetase; Provisi 2e-74
cd07962135 cd07962, Anticodon_Ia_Val, Anticodon-binding domai 8e-51
COG0495814 COG0495, LeuS, Leucyl-tRNA synthetase [Translation 2e-50
TIGR00395938 TIGR00395, leuS_arch, leucyl-tRNA synthetase, arch 8e-50
cd00668312 cd00668, Ile_Leu_Val_MetRS_core, catalytic core do 3e-47
PLN02843974 PLN02843, PLN02843, isoleucyl-tRNA synthetase 2e-45
TIGR00396842 TIGR00396, leuS_bact, leucyl-tRNA synthetase, euba 6e-40
pfam08264148 pfam08264, Anticodon_1, Anticodon-binding domain o 1e-38
cd00818338 cd00818, IleRS_core, catalytic core domain of isol 2e-36
cd00668312 cd00668, Ile_Leu_Val_MetRS_core, catalytic core do 3e-36
PTZ004271205 PTZ00427, PTZ00427, isoleucine-tRNA ligase, putati 1e-34
PRK12300897 PRK12300, leuS, leucyl-tRNA synthetase; Reviewed 4e-34
PLN02882 1159 PLN02882, PLN02882, aminoacyl-tRNA ligase 5e-34
PRK00390805 PRK00390, leuS, leucyl-tRNA synthetase; Validated 2e-25
PLN02843974 PLN02843, PLN02843, isoleucyl-tRNA synthetase 1e-24
cd00818338 cd00818, IleRS_core, catalytic core domain of isol 2e-18
PLN02563963 PLN02563, PLN02563, aminoacyl-tRNA ligase 3e-18
COG0143558 COG0143, MetG, Methionyl-tRNA synthetase [Translat 5e-18
cd07961183 cd07961, Anticodon_Ia_Ile_ABEc, Anticodon-binding 7e-17
cd00812314 cd00812, LeuRS_core, catalytic core domain of leuc 1e-16
pfam09334388 pfam09334, tRNA-synt_1g, tRNA synthetases class I 1e-16
cd07960180 cd07960, Anticodon_Ia_Ile_BEm, Anticodon-binding d 1e-15
PRK12300897 PRK12300, leuS, leucyl-tRNA synthetase; Reviewed 1e-14
PRK11893511 PRK11893, PRK11893, methionyl-tRNA synthetase; Rev 1e-14
PLN02882 1159 PLN02882, PLN02882, aminoacyl-tRNA ligase 3e-14
cd00814319 cd00814, MetRS_core, catalytic core domain of meth 6e-14
PRK00390805 PRK00390, leuS, leucyl-tRNA synthetase; Validated 7e-14
PRK12267648 PRK12267, PRK12267, methionyl-tRNA synthetase; Rev 7e-14
cd00812314 cd00812, LeuRS_core, catalytic core domain of leuc 2e-13
pfam1045866 pfam10458, Val_tRNA-synt_C, Valyl tRNA synthetase 2e-13
pfam13603178 pfam13603, tRNA-synt_1_2, Leucyl-tRNA synthetase, 3e-13
TIGR00398530 TIGR00398, metG, methionyl-tRNA synthetase 4e-13
COG0143558 COG0143, MetG, Methionyl-tRNA synthetase [Translat 5e-12
pfam09334388 pfam09334, tRNA-synt_1g, tRNA synthetases class I 8e-12
cd00814319 cd00814, MetRS_core, catalytic core domain of meth 2e-11
PRK11893511 PRK11893, PRK11893, methionyl-tRNA synthetase; Rev 1e-10
TIGR00398530 TIGR00398, metG, methionyl-tRNA synthetase 2e-09
cd07959117 cd07959, Anticodon_Ia_Leu_AEc, Anticodon-binding d 1e-08
PRK00133673 PRK00133, metG, methionyl-tRNA synthetase; Reviewe 1e-08
PLN029591084 PLN02959, PLN02959, aminoacyl-tRNA ligase 2e-08
PRK12267648 PRK12267, PRK12267, methionyl-tRNA synthetase; Rev 7e-08
PRK12268556 PRK12268, PRK12268, methionyl-tRNA synthetase; Rev 4e-07
PRK12268556 PRK12268, PRK12268, methionyl-tRNA synthetase; Rev 4e-07
PTZ00427 1205 PTZ00427, PTZ00427, isoleucine-tRNA ligase, putati 1e-06
cd07958117 cd07958, Anticodon_Ia_Leu_BEm, Anticodon-binding d 1e-05
PLN02224616 PLN02224, PLN02224, methionine-tRNA ligase 3e-05
COG0215464 COG0215, CysS, Cysteinyl-tRNA synthetase [Translat 4e-05
cd07375117 cd07375, Anticodon_Ia_like, Anticodon-binding doma 4e-05
PLN02563963 PLN02563, PLN02563, aminoacyl-tRNA ligase 9e-04
PRK00133673 PRK00133, metG, methionyl-tRNA synthetase; Reviewe 0.001
cd00672213 cd00672, CysRS_core, catalytic core domain of cyst 0.004
>gnl|CDD|215509 PLN02943, PLN02943, aminoacyl-tRNA ligase Back     alignment and domain information 
 Score = 1820 bits (4716), Expect = 0.0
 Identities = 820/962 (85%), Positives = 881/962 (91%), Gaps = 14/962 (1%)

Query: 6   SPFISGPTLLSSYRLNPLLFSKRQRCMKLPHWHFNRTKQRFFAVAAAENNKDTLP---KT 62
            P  +  +  S  RLNPLL S  +R    P     R  +RF A AA+EN+  T P   K+
Sbjct: 5   RPSSALLSCSSIRRLNPLLLSACRRRAWAP----RRAARRFCAAAASENDVFTSPETAKS 60

Query: 63  FDFTSEERIYNWWESQGYFKPNFERGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRY 122
           FDFTSEERIYNWWESQGYFKPNF+RG DPFVI MPPPNVTGSLHMGHAMFVTLEDIMVRY
Sbjct: 61  FDFTSEERIYNWWESQGYFKPNFDRGGDPFVIPMPPPNVTGSLHMGHAMFVTLEDIMVRY 120

Query: 123 HRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKYGGTIT 182
           +RMKGRPTLW+PGTDHAGIATQLVVEKMLA+EGIKR +L RDEFTKRVWEWKEKYGGTIT
Sbjct: 121 NRMKGRPTLWIPGTDHAGIATQLVVEKMLASEGIKRTDLGRDEFTKRVWEWKEKYGGTIT 180

Query: 183 SQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDL 242
           +QIKRLGASCDW+RERFTLDEQLSRAVVEAF+RLHEKGLIYQGSYMVNWSPNLQTAVSDL
Sbjct: 181 NQIKRLGASCDWSRERFTLDEQLSRAVVEAFVRLHEKGLIYQGSYMVNWSPNLQTAVSDL 240

Query: 243 EVEYSEEPGTLYYIKYRVAGRS-DFLTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAI 301
           EVEYSEEPGTLYYIKYRVAG S DFLTIATTRPETLFGDVA+AVNP+D+ YS++IG MAI
Sbjct: 241 EVEYSEEPGTLYYIKYRVAGGSEDFLTIATTRPETLFGDVAIAVNPEDDRYSKYIGKMAI 300

Query: 302 VPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTLNEV 361
           VPMTYGRHVPII+D+YVDK+FGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTLNEV
Sbjct: 301 VPMTYGRHVPIIADRYVDKDFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTLNEV 360

Query: 362 AGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEP 421
           AGL+     FEAR+KLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEP
Sbjct: 361 AGLYW----FEAREKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEP 416

Query: 422 LAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGK--EEE 479
           LAEKAL AVE GELTI+PERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGK  EE+
Sbjct: 417 LAEKALKAVENGELTIIPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKDCEED 476

Query: 480 YIVARNADEALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKKFYP 539
           YIVAR+A+EALEKA +KYGK+VEIYQDPDVLDTWFSSALWPFSTLGWPDVSA+DFKKFYP
Sbjct: 477 YIVARSAEEALEKAREKYGKDVEIYQDPDVLDTWFSSALWPFSTLGWPDVSAEDFKKFYP 536

Query: 540 TTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPID 599
           TT+LETGHDILFFWVARMVMMGIEFTG+VPFS+VYLHGLIRDSQGRKMSKTLGNVIDP+D
Sbjct: 537 TTVLETGHDILFFWVARMVMMGIEFTGTVPFSYVYLHGLIRDSQGRKMSKTLGNVIDPLD 596

Query: 600 TIKEFGADALRFTISLGTAGQDLSLSIERLTANKAFTNKLWNAGKFILQNLPSQNDISRW 659
           TIKEFG DALRFT++LGTAGQDL+LS ERLT+NKAFTNKLWNAGKF+LQNLPSQ+D S W
Sbjct: 597 TIKEFGTDALRFTLALGTAGQDLNLSTERLTSNKAFTNKLWNAGKFVLQNLPSQSDTSAW 656

Query: 660 EILLAYKFDEEECLCKAPLPECWVVSKLHMLIDTVTASYDKYFFGDVGRETYDFFWSDFA 719
           E +LA KFD+EE L   PLPECWVVSKLH LID+VT SYDKYFFGDVGRE YDFFWSDFA
Sbjct: 657 EHILACKFDKEESLLSLPLPECWVVSKLHELIDSVTTSYDKYFFGDVGREIYDFFWSDFA 716

Query: 720 DWYIEASKARLYRSEYDSDAIIAQAVLLYIFENILKLLHPFMPFVTEELWQSLRKRKEAL 779
           DWYIEASK RLY S  +S    AQAVLLY+FENILKLLHPFMPFVTEELWQ+L  RKEAL
Sbjct: 717 DWYIEASKTRLYHSGDNSALSRAQAVLLYVFENILKLLHPFMPFVTEELWQALPYRKEAL 776

Query: 780 IVSPWPQTSLPRHMSAIKRFENLQSLTRAIRNARAEYSVEPAKRISASIVANEEVIQYIS 839
           IVSPWPQTSLP+ + +IKRFENLQSLTRAIRNARAEYSVEPAKRISASIVA+ EVI+YIS
Sbjct: 777 IVSPWPQTSLPKDLKSIKRFENLQSLTRAIRNARAEYSVEPAKRISASIVASAEVIEYIS 836

Query: 840 KEKEVLALLSRLDLLNVHFTESPPGDANQSVHLVASEGLEAYLPLADMVDISAEVQRLSK 899
           KEKEVLALLSRLDL NVHFT+SPPGDANQSVHLVASEGLEAYLPLADMVDISAEV+RLSK
Sbjct: 837 KEKEVLALLSRLDLQNVHFTDSPPGDANQSVHLVASEGLEAYLPLADMVDISAEVERLSK 896

Query: 900 RLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFLRSTVMV 959
           RLSKMQ+EYD L ARLSS KFVEKAPEDVVRGV+EKAAEAEEKI LTKNRLAFL+ST +V
Sbjct: 897 RLSKMQTEYDALAARLSSPKFVEKAPEDVVRGVREKAAEAEEKIKLTKNRLAFLKSTSLV 956

Query: 960 TK 961
           ++
Sbjct: 957 SQ 958

Length = 958
>gnl|CDD|235582 PRK05729, valS, valyl-tRNA synthetase; Reviewed Back     alignment and domain information
>gnl|CDD|223599 COG0525, ValS, Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|232969 TIGR00422, valS, valyl-tRNA synthetase Back     alignment and domain information
>gnl|CDD|240411 PTZ00419, PTZ00419, valyl-tRNA synthetase-like protein; Provisional Back     alignment and domain information
>gnl|CDD|237855 PRK14900, valS, valyl-tRNA synthetase; Provisional Back     alignment and domain information
>gnl|CDD|215214 PLN02381, PLN02381, valyl-tRNA synthetase Back     alignment and domain information
>gnl|CDD|215739 pfam00133, tRNA-synt_1, tRNA synthetases class I (I, L, M and V) Back     alignment and domain information
>gnl|CDD|237306 PRK13208, valS, valyl-tRNA synthetase; Reviewed Back     alignment and domain information
>gnl|CDD|223138 COG0060, IleS, Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|232953 TIGR00392, ileS, isoleucyl-tRNA synthetase Back     alignment and domain information
>gnl|CDD|185677 cd00817, ValRS_core, catalytic core domain of valyl-tRNA synthetases Back     alignment and domain information
>gnl|CDD|235681 PRK06039, ileS, isoleucyl-tRNA synthetase; Reviewed Back     alignment and domain information
>gnl|CDD|185677 cd00817, ValRS_core, catalytic core domain of valyl-tRNA synthetases Back     alignment and domain information
>gnl|CDD|235588 PRK05743, ileS, isoleucyl-tRNA synthetase; Reviewed Back     alignment and domain information
>gnl|CDD|237514 PRK13804, ileS, isoleucyl-tRNA synthetase; Provisional Back     alignment and domain information
>gnl|CDD|153416 cd07962, Anticodon_Ia_Val, Anticodon-binding domain of valyl tRNA synthetases Back     alignment and domain information
>gnl|CDD|223569 COG0495, LeuS, Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|232955 TIGR00395, leuS_arch, leucyl-tRNA synthetase, archaeal and cytosolic family Back     alignment and domain information
>gnl|CDD|185674 cd00668, Ile_Leu_Val_MetRS_core, catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases Back     alignment and domain information
>gnl|CDD|215452 PLN02843, PLN02843, isoleucyl-tRNA synthetase Back     alignment and domain information
>gnl|CDD|232956 TIGR00396, leuS_bact, leucyl-tRNA synthetase, eubacterial and mitochondrial family Back     alignment and domain information
>gnl|CDD|219767 pfam08264, Anticodon_1, Anticodon-binding domain of tRNA Back     alignment and domain information
>gnl|CDD|173909 cd00818, IleRS_core, catalytic core domain of isoleucyl-tRNA synthetases Back     alignment and domain information
>gnl|CDD|185674 cd00668, Ile_Leu_Val_MetRS_core, catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases Back     alignment and domain information
>gnl|CDD|173617 PTZ00427, PTZ00427, isoleucine-tRNA ligase, putative; Provisional Back     alignment and domain information
>gnl|CDD|237049 PRK12300, leuS, leucyl-tRNA synthetase; Reviewed Back     alignment and domain information
>gnl|CDD|215477 PLN02882, PLN02882, aminoacyl-tRNA ligase Back     alignment and domain information
>gnl|CDD|234743 PRK00390, leuS, leucyl-tRNA synthetase; Validated Back     alignment and domain information
>gnl|CDD|215452 PLN02843, PLN02843, isoleucyl-tRNA synthetase Back     alignment and domain information
>gnl|CDD|173909 cd00818, IleRS_core, catalytic core domain of isoleucyl-tRNA synthetases Back     alignment and domain information
>gnl|CDD|178177 PLN02563, PLN02563, aminoacyl-tRNA ligase Back     alignment and domain information
>gnl|CDD|223221 COG0143, MetG, Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|153415 cd07961, Anticodon_Ia_Ile_ABEc, Anticodon-binding domain of archaeal, bacterial, and eukaryotic cytoplasmic isoleucyl tRNA synthetases Back     alignment and domain information
>gnl|CDD|173906 cd00812, LeuRS_core, catalytic core domain of leucyl-tRNA synthetases Back     alignment and domain information
>gnl|CDD|220185 pfam09334, tRNA-synt_1g, tRNA synthetases class I (M) Back     alignment and domain information
>gnl|CDD|153414 cd07960, Anticodon_Ia_Ile_BEm, Anticodon-binding domain of bacterial and eukaryotic mitochondrial isoleucyl tRNA synthetases Back     alignment and domain information
>gnl|CDD|237049 PRK12300, leuS, leucyl-tRNA synthetase; Reviewed Back     alignment and domain information
>gnl|CDD|237012 PRK11893, PRK11893, methionyl-tRNA synthetase; Reviewed Back     alignment and domain information
>gnl|CDD|215477 PLN02882, PLN02882, aminoacyl-tRNA ligase Back     alignment and domain information
>gnl|CDD|173907 cd00814, MetRS_core, catalytic core domain of methioninyl-tRNA synthetases Back     alignment and domain information
>gnl|CDD|234743 PRK00390, leuS, leucyl-tRNA synthetase; Validated Back     alignment and domain information
>gnl|CDD|237028 PRK12267, PRK12267, methionyl-tRNA synthetase; Reviewed Back     alignment and domain information
>gnl|CDD|173906 cd00812, LeuRS_core, catalytic core domain of leucyl-tRNA synthetases Back     alignment and domain information
>gnl|CDD|151031 pfam10458, Val_tRNA-synt_C, Valyl tRNA synthetase tRNA binding arm Back     alignment and domain information
>gnl|CDD|222257 pfam13603, tRNA-synt_1_2, Leucyl-tRNA synthetase, Domain 2 Back     alignment and domain information
>gnl|CDD|232957 TIGR00398, metG, methionyl-tRNA synthetase Back     alignment and domain information
>gnl|CDD|223221 COG0143, MetG, Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|220185 pfam09334, tRNA-synt_1g, tRNA synthetases class I (M) Back     alignment and domain information
>gnl|CDD|173907 cd00814, MetRS_core, catalytic core domain of methioninyl-tRNA synthetases Back     alignment and domain information
>gnl|CDD|237012 PRK11893, PRK11893, methionyl-tRNA synthetase; Reviewed Back     alignment and domain information
>gnl|CDD|232957 TIGR00398, metG, methionyl-tRNA synthetase Back     alignment and domain information
>gnl|CDD|153413 cd07959, Anticodon_Ia_Leu_AEc, Anticodon-binding domain of archaeal and eukaryotic cytoplasmic leucyl tRNA synthetases Back     alignment and domain information
>gnl|CDD|234655 PRK00133, metG, methionyl-tRNA synthetase; Reviewed Back     alignment and domain information
>gnl|CDD|215518 PLN02959, PLN02959, aminoacyl-tRNA ligase Back     alignment and domain information
>gnl|CDD|237028 PRK12267, PRK12267, methionyl-tRNA synthetase; Reviewed Back     alignment and domain information
>gnl|CDD|237029 PRK12268, PRK12268, methionyl-tRNA synthetase; Reviewed Back     alignment and domain information
>gnl|CDD|237029 PRK12268, PRK12268, methionyl-tRNA synthetase; Reviewed Back     alignment and domain information
>gnl|CDD|173617 PTZ00427, PTZ00427, isoleucine-tRNA ligase, putative; Provisional Back     alignment and domain information
>gnl|CDD|153412 cd07958, Anticodon_Ia_Leu_BEm, Anticodon-binding domain of bacterial and eukaryotic mitochondrial leucyl tRNA synthetases Back     alignment and domain information
>gnl|CDD|177869 PLN02224, PLN02224, methionine-tRNA ligase Back     alignment and domain information
>gnl|CDD|223293 COG0215, CysS, Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|153408 cd07375, Anticodon_Ia_like, Anticodon-binding domain of class Ia aminoacyl tRNA synthetases and similar domains Back     alignment and domain information
>gnl|CDD|178177 PLN02563, PLN02563, aminoacyl-tRNA ligase Back     alignment and domain information
>gnl|CDD|234655 PRK00133, metG, methionyl-tRNA synthetase; Reviewed Back     alignment and domain information
>gnl|CDD|173899 cd00672, CysRS_core, catalytic core domain of cysteinyl tRNA synthetase Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 961
COG0525877 ValS Valyl-tRNA synthetase [Translation, ribosomal 100.0
KOG0432995 consensus Valyl-tRNA synthetase [Translation, ribo 100.0
PLN02943958 aminoacyl-tRNA ligase 100.0
PLN023811066 valyl-tRNA synthetase 100.0
PTZ00419995 valyl-tRNA synthetase-like protein; Provisional 100.0
PRK05729874 valS valyl-tRNA synthetase; Reviewed 100.0
TIGR00422861 valS valyl-tRNA synthetase. The valyl-tRNA synthet 100.0
PRK14900 1052 valS valyl-tRNA synthetase; Provisional 100.0
PRK06039975 ileS isoleucyl-tRNA synthetase; Reviewed 100.0
PTZ004271205 isoleucine-tRNA ligase, putative; Provisional 100.0
PLN02882 1159 aminoacyl-tRNA ligase 100.0
PRK13208800 valS valyl-tRNA synthetase; Reviewed 100.0
PRK13804961 ileS isoleucyl-tRNA synthetase; Provisional 100.0
PRK05743912 ileS isoleucyl-tRNA synthetase; Reviewed 100.0
PLN02843974 isoleucyl-tRNA synthetase 100.0
COG0060933 IleS Isoleucyl-tRNA synthetase [Translation, ribos 100.0
TIGR00392861 ileS isoleucyl-tRNA synthetase. The isoleucyl tRNA 100.0
PLN029591084 aminoacyl-tRNA ligase 100.0
TIGR00395938 leuS_arch leucyl-tRNA synthetase, archaeal and cyt 100.0
PF00133601 tRNA-synt_1: tRNA synthetases class I (I, L, M and 100.0
PRK12300897 leuS leucyl-tRNA synthetase; Reviewed 100.0
PLN02563963 aminoacyl-tRNA ligase 100.0
TIGR00396842 leuS_bact leucyl-tRNA synthetase, eubacterial and 100.0
KOG04341070 consensus Isoleucyl-tRNA synthetase [Translation, 100.0
PRK00390805 leuS leucyl-tRNA synthetase; Validated 100.0
KOG0433937 consensus Isoleucyl-tRNA synthetase [Translation, 100.0
COG0495814 LeuS Leucyl-tRNA synthetase [Translation, ribosoma 100.0
KOG0435876 consensus Leucyl-tRNA synthetase [Translation, rib 100.0
PRK12268556 methionyl-tRNA synthetase; Reviewed 100.0
cd00817382 ValRS_core catalytic core domain of valyl-tRNA syn 100.0
TIGR00398530 metG methionyl-tRNA synthetase. The methionyl-tRNA 100.0
PRK00133673 metG methionyl-tRNA synthetase; Reviewed 100.0
PRK12267648 methionyl-tRNA synthetase; Reviewed 100.0
KOG04371080 consensus Leucyl-tRNA synthetase [Translation, rib 100.0
PLN02610801 probable methionyl-tRNA synthetase 100.0
COG0143558 MetG Methionyl-tRNA synthetase [Translation, ribos 100.0
PRK11893511 methionyl-tRNA synthetase; Reviewed 100.0
PLN02224616 methionine-tRNA ligase 100.0
cd00818338 IleRS_core catalytic core domain of isoleucyl-tRNA 100.0
KOG0436578 consensus Methionyl-tRNA synthetase [Translation, 100.0
cd00668312 Ile_Leu_Val_MetRS_core catalytic core domain of is 100.0
PF09334391 tRNA-synt_1g: tRNA synthetases class I (M); InterP 100.0
cd00814319 MetRS_core catalytic core domain of methioninyl-tR 100.0
cd00812314 LeuRS_core catalytic core domain of leucyl-tRNA sy 100.0
KOG1247567 consensus Methionyl-tRNA synthetase [Translation, 100.0
PRK00260463 cysS cysteinyl-tRNA synthetase; Validated 100.0
PTZ00399651 cysteinyl-tRNA-synthetase; Provisional 100.0
TIGR00435465 cysS cysteinyl-tRNA synthetase. This model finds t 100.0
PRK12418384 cysteinyl-tRNA synthetase; Provisional 100.0
TIGR03447411 mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino- 100.0
PRK14536490 cysS cysteinyl-tRNA synthetase; Provisional 100.0
PLN02946557 cysteine-tRNA ligase 100.0
PRK14535699 cysS cysteinyl-tRNA synthetase; Provisional 100.0
PRK14534481 cysS cysteinyl-tRNA synthetase; Provisional 100.0
PRK01611507 argS arginyl-tRNA synthetase; Reviewed 99.98
cd00672213 CysRS_core catalytic core domain of cysteinyl tRNA 99.97
cd00674353 LysRS_core_class_I catalytic core domain of class 99.96
COG0215464 CysS Cysteinyl-tRNA synthetase [Translation, ribos 99.96
KOG2007586 consensus Cysteinyl-tRNA synthetase [Translation, 99.94
cd07961183 Anticodon_Ia_Ile_ABEc Anticodon-binding domain of 99.93
PF01406300 tRNA-synt_1e: tRNA synthetases class I (C) catalyt 99.93
PRK00750510 lysK lysyl-tRNA synthetase; Reviewed 99.92
cd07960180 Anticodon_Ia_Ile_BEm Anticodon-binding domain of b 99.91
TIGR00456566 argS arginyl-tRNA synthetase. This model recognize 99.91
PF13603185 tRNA-synt_1_2: Leucyl-tRNA synthetase, Domain 2; P 99.89
PF08264153 Anticodon_1: Anticodon-binding domain of tRNA; Int 99.89
COG0018577 ArgS Arginyl-tRNA synthetase [Translation, ribosom 99.85
TIGR00467515 lysS_arch lysyl-tRNA synthetase, archaeal and spir 99.83
PRK12451562 arginyl-tRNA synthetase; Reviewed 99.83
PLN02286576 arginine-tRNA ligase 99.81
cd00671212 ArgRS_core catalytic core domain of arginyl-tRNA s 99.69
cd07962135 Anticodon_Ia_Val Anticodon-binding domain of valyl 99.66
cd07959117 Anticodon_Ia_Leu_AEc Anticodon-binding domain of a 99.61
cd07957129 Anticodon_Ia_Met Anticodon-binding domain of methi 99.56
cd07958117 Anticodon_Ia_Leu_BEm Anticodon-binding domain of b 99.54
PF00750354 tRNA-synt_1d: tRNA synthetases class I (R); InterP 99.52
PF1045866 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA bindin 99.48
cd07375117 Anticodon_Ia_like Anticodon-binding domain of clas 99.2
PF01921360 tRNA-synt_1f: tRNA synthetases class I (K); InterP 99.18
cd00802143 class_I_aaRS_core catalytic core domain of class I 99.16
PRK04156567 gltX glutamyl-tRNA synthetase; Provisional 99.03
COG1384521 LysS Lysyl-tRNA synthetase (class I) [Translation, 98.91
TIGR00464470 gltX_bact glutamyl-tRNA synthetase, bacterial fami 98.82
PRK01406476 gltX glutamyl-tRNA synthetase; Reviewed 98.71
TIGR00463560 gltX_arch glutamyl-tRNA synthetase, archaeal and e 98.63
PRK12558445 glutamyl-tRNA synthetase; Provisional 98.56
PRK12410433 glutamylglutaminyl-tRNA synthetase; Provisional 98.56
PLN03233523 putative glutamate-tRNA ligase; Provisional 98.45
PRK05347554 glutaminyl-tRNA synthetase; Provisional 98.43
PLN02907722 glutamate-tRNA ligase 98.38
PRK14703771 glutaminyl-tRNA synthetase/YqeY domain fusion prot 98.29
PLN02627535 glutamyl-tRNA synthetase 98.27
PRK14895513 gltX glutamyl-tRNA synthetase; Provisional 98.25
cd09287240 GluRS_non_core catalytic core domain of non-discri 98.14
KOG4426656 consensus Arginyl-tRNA synthetase [Translation, ri 98.08
TIGR03838272 queuosine_YadB glutamyl-queuosine tRNA(Asp) synthe 97.71
PTZ00402601 glutamyl-tRNA synthetase; Provisional 97.57
PTZ00437574 glutaminyl-tRNA synthetase; Provisional 97.57
TIGR00440522 glnS glutaminyl-tRNA synthetase. This protein is a 97.51
cd00807238 GlnRS_core catalytic core domain of glutaminyl-tRN 97.49
PF00749314 tRNA-synt_1c: tRNA synthetases class I (E and Q), 97.45
PLN02859788 glutamine-tRNA ligase 97.4
COG0008472 GlnS Glutamyl- and glutaminyl-tRNA synthetases [Tr 97.3
PRK05710299 glutamyl-Q tRNA(Asp) synthetase; Reviewed 97.27
cd00418230 GlxRS_core catalytic core domain of glutamyl-tRNA 97.2
cd00808239 GluRS_core catalytic core domain of discriminating 97.06
KOG1147712 consensus Glutamyl-tRNA synthetase [Translation, r 96.41
cd07956156 Anticodon_Ia_Arg Anticodon-binding domain of argin 96.16
KOG1195567 consensus Arginyl-tRNA synthetase [Translation, ri 96.14
PRK13354410 tyrosyl-tRNA synthetase; Provisional 95.18
cd00418230 GlxRS_core catalytic core domain of glutamyl-tRNA 95.12
COG0495814 LeuS Leucyl-tRNA synthetase [Translation, ribosoma 94.17
PRK05912408 tyrosyl-tRNA synthetase; Validated 94.12
PLN02563 963 aminoacyl-tRNA ligase 94.1
cd00805269 TyrRS_core catalytic core domain of tyrosinyl-tRNA 94.04
PRK14900 1052 valS valyl-tRNA synthetase; Provisional 94.0
cd00802143 class_I_aaRS_core catalytic core domain of class I 93.78
KOG1148764 consensus Glutaminyl-tRNA synthetase [Translation, 93.76
cd00395273 Tyr_Trp_RS_core catalytic core domain of tyrosinyl 93.7
PF00579292 tRNA-synt_1b: tRNA synthetases class I (W and Y); 93.61
KOG1149524 consensus Glutamyl-tRNA synthetase (mitochondrial) 92.94
PRK12556332 tryptophanyl-tRNA synthetase; Provisional 92.91
cd00808239 GluRS_core catalytic core domain of discriminating 92.75
PRK12284431 tryptophanyl-tRNA synthetase; Reviewed 92.44
TIGR00396 842 leuS_bact leucyl-tRNA synthetase, eubacterial and 92.16
TIGR00233328 trpS tryptophanyl-tRNA synthetase. This model repr 91.71
PRK08560329 tyrosyl-tRNA synthetase; Validated 91.47
COG0180314 TrpS Tryptophanyl-tRNA synthetase [Translation, ri 90.9
PRK00390805 leuS leucyl-tRNA synthetase; Validated 90.73
PRK12282333 tryptophanyl-tRNA synthetase II; Reviewed 90.19
PRK12285368 tryptophanyl-tRNA synthetase; Reviewed 89.63
COG0162401 TyrS Tyrosyl-tRNA synthetase [Translation, ribosom 89.47
PF1518885 CCDC-167: Coiled-coil domain-containing protein 16 89.44
cd00806280 TrpRS_core catalytic core domain of tryptophanyl-t 89.23
PTZ00126383 tyrosyl-tRNA synthetase; Provisional 89.2
PLN02486383 aminoacyl-tRNA ligase 88.9
PRK12285368 tryptophanyl-tRNA synthetase; Reviewed 87.99
TIGR00234377 tyrS tyrosyl-tRNA synthetase. This tyrosyl-tRNA sy 87.63
KOG0435 876 consensus Leucyl-tRNA synthetase [Translation, rib 87.48
PRK00927333 tryptophanyl-tRNA synthetase; Reviewed 86.3
cd00806280 TrpRS_core catalytic core domain of tryptophanyl-t 85.17
PF02388 406 FemAB: FemAB family; InterPro: IPR003447 The femAB 85.13
cd00395273 Tyr_Trp_RS_core catalytic core domain of tyrosinyl 84.54
cd00671212 ArgRS_core catalytic core domain of arginyl-tRNA s 83.69
cd00807238 GlnRS_core catalytic core domain of glutaminyl-tRN 82.72
PRK12283398 tryptophanyl-tRNA synthetase; Reviewed 82.6
PRK13354410 tyrosyl-tRNA synthetase; Provisional 82.31
cd00805269 TyrRS_core catalytic core domain of tyrosinyl-tRNA 82.28
PRK08560329 tyrosyl-tRNA synthetase; Validated 82.24
>COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information 
Probab=100.00  E-value=7.5e-227  Score=1970.75  Aligned_cols=872  Identities=51%  Similarity=0.927  Sum_probs=812.9

Q ss_pred             CCCCCCh-hhHHHHHHHHHhCCCCCCCCCCCCCCEEEeCCCCCcCCCCCCchhhHhHHHHHHHHHHHHcCCCeeecCCCC
Q 002136           59 LPKTFDF-TSEERIYNWWESQGYFKPNFERGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTD  137 (961)
Q Consensus        59 ~~~~~~~-~~E~~~~~~W~~~~~f~~~~~~~~~~f~i~~ppPy~nG~LHiGHa~~~~~~Di~~R~~rm~G~~Vl~~~G~D  137 (961)
                      |++.||| ++|++||++|+++|+|++..+.+.++|+|.+|||||||.||||||+++|++|+++||+||+||+|+|+||||
T Consensus         1 ~~~~ydp~~iE~k~~~~W~~~~~f~~~~~~~~~~f~I~~PPPNVTG~LHmGHAl~~tl~D~l~RykRM~G~~vl~~pG~D   80 (877)
T COG0525           1 LPKTYDPKEIEEKWYKKWEESGYFKPDPNEDKPPFSIDTPPPNVTGSLHMGHALNYTLQDILARYKRMRGYNVLWPPGTD   80 (877)
T ss_pred             CCCCCChhhhhHHHHHHHHhcCCccCCCCCCCCCcEEeCCCCCCCCcccchhhhhHHHHHHHHHHHHcCCCeeecCCCCC
Confidence            5789999 899999999999999999866442669999999999999999999999999999999999999999999999


Q ss_pred             CCCchHHHHHHHHHHHcCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCccCCCCCccCCChhhHHHHHHHHHHHH
Q 002136          138 HAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLH  217 (961)
Q Consensus       138 ~~Gl~~q~~vek~l~~~g~~~~~~~~~~f~~~~~~~~~~~~~~i~~~l~~lG~s~Dw~r~~~T~d~~~~~~v~~~F~~L~  217 (961)
                      |||||||.+||+++.++|+++++++||+|+++||+|++++++.|++||++||+|+||+|+||||||+++++|+++|++||
T Consensus        81 hAGIaTq~~VEk~l~~~g~~r~d~gRe~Fl~~~weWk~e~~~~I~~Q~~rLG~S~DWsrE~fTmD~~~s~av~~~Fv~Ly  160 (877)
T COG0525          81 HAGIATQVVVEKQLAAEGITRHDLGREEFLKKCWEWKEESGGTIREQLRRLGVSVDWSRERFTMDPGLSRAVQEAFVRLY  160 (877)
T ss_pred             CCCchHHHHHHHHHHHcCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccccccCCHHHHHHHHHHHHHHH
Confidence            99999999999999888999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCceEEcCeeeecCCCCCccccccccccccCCCeEEEEEEEecCCCeeEEEEecCCCccCCCcEEEECCCCchhhhhcc
Q 002136          218 EKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEEPGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIG  297 (961)
Q Consensus       218 ~~GlIy~~~~~v~w~p~~~t~lsd~Ev~~~e~~~~~~~~~~~~~~~~~~l~v~TtrPeTl~g~~av~v~P~~~~y~~l~g  297 (961)
                      ++|||||++++|||||+|+|||||.||+|+|..|.+|||+|++++++.+|+|||||||||+||+||||||+|+||++|+|
T Consensus       161 ~~GlIYr~~~lVNWcP~~~TAiSd~EVe~~e~~g~L~~i~y~l~~~~~~i~VATTRPEtmlgdtAVaVhP~DeRYk~LvG  240 (877)
T COG0525         161 EKGLIYRGERLVNWCPKCRTAISDIEVEYKEVEGKLYYIKYPLADGDGYLVVATTRPETLLGDTAVAVHPDDERYKHLVG  240 (877)
T ss_pred             HCCceeecCCcccCCCccccchhhhhhccceeeeeEEEEEEecCCCCceEEEEecCccccccceEEEECCCChhhHhhcC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CeeeccCCCCCeeeeeecCccccCCCcceeEeCCCCChhHHHHHHHhCCCceeecCCCCccccccc-ccCCCchHHHHHH
Q 002136          298 MMAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAG-LFRGLDRFEARKK  376 (961)
Q Consensus       298 ~~~~~P~~~~~~ipii~~~~V~~~~GTG~v~~~Pah~~~D~~~~~~~~l~~~~~~~~~G~~~~~~g-~~~G~~~~~ar~~  376 (961)
                      +++++|+ .|++||||+|+|||++||||+||||||||++||++++||+||+++++|++|+++++++ +|+||+|++||++
T Consensus       241 k~v~lPl-~~r~IpIiaD~~VD~eFGTG~VkItpahD~nD~e~~krh~Lp~i~i~d~dG~in~~~~~~~~Gl~r~eAR~k  319 (877)
T COG0525         241 KEVILPL-VGREIPIIADEYVDPEFGTGAVKITPAHDFNDYEVGKRHNLPLINIIDEDGRINEEAAGEFAGLDRFEARKK  319 (877)
T ss_pred             CEEecCC-CCCeeeeecCcccCCcCCCceEEecCCCCchhhhhhhcCCCCceEEECCCCeeccCCccccCCCcHHHHHHH
Confidence            9999999 5899999999999999999999999999999999999999999999999999998885 9999999999999


Q ss_pred             HHHHHHHcCCccccccccccCCcccCCCCceeeeeccceeeeccHHHHHHHHHHHcCCceeechhHHHHHHHHHhcCCCc
Q 002136          377 LWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDW  456 (961)
Q Consensus       377 i~~~L~~~g~~~~~~~~~~~~p~~~r~~~~v~~~~~~qwF~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~wl~~l~DW  456 (961)
                      |++.|++.|++++.+++.|++|+|+|||+||||++++||||++..+++.+++++++|+++|+|++++++|.+|+++++||
T Consensus       320 Iv~~L~~~GlLvk~e~~~h~V~~~~R~g~~IEp~ls~QWfVk~~~la~~~l~~~~~g~i~f~P~~~~~~~~~W~~~i~DW  399 (877)
T COG0525         320 IVEDLEEQGLLVKIEPHKHSVGHCERCGTPIEPLLSKQWFVKVLELAKKALEAVKDGKIKFVPERMEKRYEDWMENIRDW  399 (877)
T ss_pred             HHHHHHhCCCeEeeeeccccCccccCCCceeeeeecceeeEEhHhhHHHHHHHHhcCCceEecHHHHHHHHHHHhhCcCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeeeccCCCcccceEEEcCCcccEEEecChHHHHHHHHhhcCCCcccccCCCceeeeecCCCccccccCCCCCChhHHhh
Q 002136          457 CISRQLWWGHRIPVWYIVGKEEEYIVARNADEALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKK  536 (961)
Q Consensus       457 ~ISRq~~WG~pIP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvldtWf~S~l~~~~~~~~p~~~~~~~~~  536 (961)
                      |||||+|||||||+|||.+ ++..+++.+..+....+  ..+....++||+|||||||||++|||+++|||+++ .+|++
T Consensus       400 cISRQlwwGh~IPvWy~~~-~g~v~v~~~~~~~~~~~--~~~~~~~~~qd~DVLDTWFSS~LwPfstlgWp~~t-~~l~~  475 (877)
T COG0525         400 CISRQLWWGHRIPVWYCKE-CGNVVVAEEEPEDPAAA--EKCPKEELEQDEDVLDTWFSSSLWPFSTLGWPEET-PDLKK  475 (877)
T ss_pred             eeeeeeecCcccceEEecC-CCcEEeCCccccchhhh--ccCchhcccCCcchhhhhhhcccccccccCCCCcc-hHHHh
Confidence            9999999999999999963 67788887744333221  11212568999999999999999999999999997 99999


Q ss_pred             cCCcceEeeeccccccHHHHHHHHHhHhcCCCCceEEEEeceEEcCCCccccccCCCccCchhhhhhcChhHHHHHHHhC
Q 002136          537 FYPTTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLG  616 (961)
Q Consensus       537 ~~P~d~~~~G~Dil~fw~~~~i~~~~~l~~~~Pfk~v~~hg~v~d~~G~KMSKS~GNvI~p~dii~~yGaDalR~~L~~~  616 (961)
                      |||+|++++|+||||||++||+|+++.++|+.||+.|++||+|+|.+|+|||||+||||||.++|++||||||||+|++.
T Consensus       476 fyPt~llvtG~DIIffWvarmi~~~~~~~~~~PFk~V~ihGLVrDe~G~KMSKS~GNvIDP~d~I~~yGaDAlRf~la~~  555 (877)
T COG0525         476 FYPTDLLVTGHDIIFFWVARMIMRGLHLTGEVPFKDVYIHGLVRDEQGRKMSKSKGNVIDPLDVIDKYGADALRFTLASL  555 (877)
T ss_pred             cCCCccccccchhhHHHHHHHHHHHHHhcCCCCccEEEEeeeEEcCCCCCCcccCCCcCCHHHHHHHhChHHHHHHHHhc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             CC-CCccccCHHHHHHHHHHHHHHHHHHHHHHhhCCCCCchhhHHHHHhhccchhhhhcCCCchhHHHHHHHHHHHHHHH
Q 002136          617 TA-GQDLSLSIERLTANKAFTNKLWNAGKFILQNLPSQNDISRWEILLAYKFDEEECLCKAPLPECWVVSKLHMLIDTVT  695 (961)
Q Consensus       617 ~~-~~D~~f~~~~~~~~~~~~nkl~N~~rf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~  695 (961)
                      +. |+|++|+++++++++||+||+||+.||+++++.+.....             ......+..|+||+++|+++++.|+
T Consensus       556 ~~~G~Di~~~~~~~~~~rnF~nKlWNa~Rfv~~~~~~~~~~~-------------~~~~~~~~~drWIls~l~~~v~~v~  622 (877)
T COG0525         556 ASPGRDINFDEKRVEGYRNFLNKLWNATRFVLMNLDDLGPDD-------------LDLLALSLADRWILSRLNETVKEVT  622 (877)
T ss_pred             cCCCcccCcCHHHHHHHHHHHHHHHhHHHHHHhcccccCccc-------------ccccccchHHHHHHHHHHHHHHHHH
Confidence            66 999999999999999999999999999999875544310             0002225789999999999999999


Q ss_pred             HhhhcCChHHHHHHHHHHHHHhhhHHHHHHhhhhhccCCChHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHhcCC
Q 002136          696 ASYDKYFFGDVGRETYDFFWSDFADWYIEASKARLYRSEYDSDAIIAQAVLLYIFENILKLLHPFMPFVTEELWQSLRKR  775 (961)
Q Consensus       696 ~a~e~~~f~~A~~~i~~f~~~~~~n~Yle~~K~~l~~~~~~~~~~~~~~~l~~vl~~~l~LL~Pf~P~itEeiw~~L~~~  775 (961)
                      ++|++|+|..|.+++|+|+|++|||||||++|++++++  ++.+.+++.+|+++|+.+++||||||||+||||||.++..
T Consensus       623 ~~ld~y~f~~a~~~ly~F~W~~fcD~YlEl~K~~l~~~--~~~~~~a~~tL~~vl~~~lrLLhPfmPfiTEei~q~l~~~  700 (877)
T COG0525         623 EALDNYRFDEAARALYEFIWNDFCDWYLELAKPRLYGG--EEEKRAARATLYYVLDTLLRLLHPFMPFITEEIWQKLPGT  700 (877)
T ss_pred             HHHHhhhHHHHHHHHHHHhHHHHHHHHHHHhhhhhcCc--HHHHHHHHHHHHHHHHHHHHHhCCCCccchHHHHHhcCCC
Confidence            99999999999999999999999999999999999986  5566799999999999999999999999999999999875


Q ss_pred             CCceeecCCCCCCC-CCChHHHHHHHHHHHHHHHHHhhhhhcccCCCceeeEEEEcCHHHHHHHHhHHHHHHHHcCCccc
Q 002136          776 KEALIVSPWPQTSL-PRHMSAIKRFENLQSLTRAIRNARAEYSVEPAKRISASIVANEEVIQYISKEKEVLALLSRLDLL  854 (961)
Q Consensus       776 ~~si~~~~wP~~~~-~~d~~~~~~~~~~~~~v~~ir~~r~~~~i~~~~~~~~~i~~~~~~~~~~~~~~~~i~~l~~~~~~  854 (961)
                       +||+.++||+++. ..|+.+++.++.+.++|++||++|+++|+++++++++.+....+....++.+...|..+++++. 
T Consensus       701 -~si~~~~~P~~~~~~~d~~a~~~~~~l~~ii~~iR~~r~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-  778 (877)
T COG0525         701 -ESIHLASWPEVDEELIDEEAEKEFELLKEIISAIRNLRAEMNLSPSAPLKVVLVGSEELEDRLEANEDDIKGLANLEE-  778 (877)
T ss_pred             -CeEEeccCCCcchhhccHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCceeEEEeccHhHHHHHHHHHHHHHHhcCcce-
Confidence             6999999999974 7889999999999999999999999999999999999888446666778888889999988854 


Q ss_pred             cEEeecCCCCCCCCcEEEEecCCeEEEecCCCccChHHHHHHHHHHHHHHHHHHHHHHhHhcCchhhccCCHHHHHHHHH
Q 002136          855 NVHFTESPPGDANQSVHLVASEGLEAYLPLADMVDISAEVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQE  934 (961)
Q Consensus       855 ~v~~~~~~~~~~~~~v~~~v~~~~~~~~~l~~~id~~~e~~rl~k~~~kl~~~~~~~~~kl~n~~f~~kap~~vv~~~~~  934 (961)
                       +.+.+..++.+..++. .+..+.++++++.|.||...|++||+|+++++++|++++++||+|++|+.|||++||+++++
T Consensus       779 -i~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~id~~~e~~rl~k~~~k~~~e~~~~~~kl~ne~f~~kAp~~vv~~e~~  856 (877)
T COG0525         779 -LEILSPDPEEPPVEVT-AVVGGAELFLPLAGLIDLAAELARLEKELEKLEKEIDRIEKKLSNEGFVAKAPEEVVEKEKE  856 (877)
T ss_pred             -eeecccCccccchhHH-hhhccceEEEeccchhhHHHHHhhHHHHHHHHHHHHHHHHHhhcchhhhhcCCHHHHHHHHH
Confidence             4454433322334454 45578899999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q 002136          935 KAAEAEEKINLTKNRLAFLR  954 (961)
Q Consensus       935 kl~~~~~~l~~~~~~l~~l~  954 (961)
                      |+++++.++++|++.|+.|+
T Consensus       857 ~~~~~~~~~~~l~~~l~~l~  876 (877)
T COG0525         857 KLAEYQVKLAKLEERLAVLK  876 (877)
T ss_pred             HHHhHHHHHHHHHHHHHHhc
Confidence            99999999999999999886

>KOG0432 consensus Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PLN02943 aminoacyl-tRNA ligase Back     alignment and domain information
>PLN02381 valyl-tRNA synthetase Back     alignment and domain information
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional Back     alignment and domain information
>PRK05729 valS valyl-tRNA synthetase; Reviewed Back     alignment and domain information
>TIGR00422 valS valyl-tRNA synthetase Back     alignment and domain information
>PRK14900 valS valyl-tRNA synthetase; Provisional Back     alignment and domain information
>PRK06039 ileS isoleucyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PTZ00427 isoleucine-tRNA ligase, putative; Provisional Back     alignment and domain information
>PLN02882 aminoacyl-tRNA ligase Back     alignment and domain information
>PRK13208 valS valyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PRK13804 ileS isoleucyl-tRNA synthetase; Provisional Back     alignment and domain information
>PRK05743 ileS isoleucyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PLN02843 isoleucyl-tRNA synthetase Back     alignment and domain information
>COG0060 IleS Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR00392 ileS isoleucyl-tRNA synthetase Back     alignment and domain information
>PLN02959 aminoacyl-tRNA ligase Back     alignment and domain information
>TIGR00395 leuS_arch leucyl-tRNA synthetase, archaeal and cytosolic family Back     alignment and domain information
>PF00133 tRNA-synt_1: tRNA synthetases class I (I, L, M and V); InterPro: IPR002300 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>PRK12300 leuS leucyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PLN02563 aminoacyl-tRNA ligase Back     alignment and domain information
>TIGR00396 leuS_bact leucyl-tRNA synthetase, eubacterial and mitochondrial family Back     alignment and domain information
>KOG0434 consensus Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK00390 leuS leucyl-tRNA synthetase; Validated Back     alignment and domain information
>KOG0433 consensus Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG0435 consensus Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK12268 methionyl-tRNA synthetase; Reviewed Back     alignment and domain information
>cd00817 ValRS_core catalytic core domain of valyl-tRNA synthetases Back     alignment and domain information
>TIGR00398 metG methionyl-tRNA synthetase Back     alignment and domain information
>PRK00133 metG methionyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PRK12267 methionyl-tRNA synthetase; Reviewed Back     alignment and domain information
>KOG0437 consensus Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PLN02610 probable methionyl-tRNA synthetase Back     alignment and domain information
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK11893 methionyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PLN02224 methionine-tRNA ligase Back     alignment and domain information
>cd00818 IleRS_core catalytic core domain of isoleucyl-tRNA synthetases Back     alignment and domain information
>KOG0436 consensus Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>cd00668 Ile_Leu_Val_MetRS_core catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases Back     alignment and domain information
>PF09334 tRNA-synt_1g: tRNA synthetases class I (M); InterPro: IPR015413 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>cd00814 MetRS_core catalytic core domain of methioninyl-tRNA synthetases Back     alignment and domain information
>cd00812 LeuRS_core catalytic core domain of leucyl-tRNA synthetases Back     alignment and domain information
>KOG1247 consensus Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK00260 cysS cysteinyl-tRNA synthetase; Validated Back     alignment and domain information
>PTZ00399 cysteinyl-tRNA-synthetase; Provisional Back     alignment and domain information
>TIGR00435 cysS cysteinyl-tRNA synthetase Back     alignment and domain information
>PRK12418 cysteinyl-tRNA synthetase; Provisional Back     alignment and domain information
>TIGR03447 mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase Back     alignment and domain information
>PRK14536 cysS cysteinyl-tRNA synthetase; Provisional Back     alignment and domain information
>PLN02946 cysteine-tRNA ligase Back     alignment and domain information
>PRK14535 cysS cysteinyl-tRNA synthetase; Provisional Back     alignment and domain information
>PRK14534 cysS cysteinyl-tRNA synthetase; Provisional Back     alignment and domain information
>PRK01611 argS arginyl-tRNA synthetase; Reviewed Back     alignment and domain information
>cd00672 CysRS_core catalytic core domain of cysteinyl tRNA synthetase Back     alignment and domain information
>cd00674 LysRS_core_class_I catalytic core domain of class I lysyl tRNA synthetase Back     alignment and domain information
>COG0215 CysS Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG2007 consensus Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>cd07961 Anticodon_Ia_Ile_ABEc Anticodon-binding domain of archaeal, bacterial, and eukaryotic cytoplasmic isoleucyl tRNA synthetases Back     alignment and domain information
>PF01406 tRNA-synt_1e: tRNA synthetases class I (C) catalytic domain; InterPro: IPR015803 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>PRK00750 lysK lysyl-tRNA synthetase; Reviewed Back     alignment and domain information
>cd07960 Anticodon_Ia_Ile_BEm Anticodon-binding domain of bacterial and eukaryotic mitochondrial isoleucyl tRNA synthetases Back     alignment and domain information
>TIGR00456 argS arginyl-tRNA synthetase Back     alignment and domain information
>PF13603 tRNA-synt_1_2: Leucyl-tRNA synthetase, Domain 2; PDB: 2AJH_B 4ARI_A 2AJG_B 4AQ7_D 2AJI_B 4ARC_A 4AS1_A 2BTE_A 2V0G_A 2BYT_A Back     alignment and domain information
>PF08264 Anticodon_1: Anticodon-binding domain of tRNA; InterPro: IPR013155 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR00467 lysS_arch lysyl-tRNA synthetase, archaeal and spirochete Back     alignment and domain information
>PRK12451 arginyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PLN02286 arginine-tRNA ligase Back     alignment and domain information
>cd00671 ArgRS_core catalytic core domain of arginyl-tRNA synthetases Back     alignment and domain information
>cd07962 Anticodon_Ia_Val Anticodon-binding domain of valyl tRNA synthetases Back     alignment and domain information
>cd07959 Anticodon_Ia_Leu_AEc Anticodon-binding domain of archaeal and eukaryotic cytoplasmic leucyl tRNA synthetases Back     alignment and domain information
>cd07957 Anticodon_Ia_Met Anticodon-binding domain of methionyl tRNA synthetases Back     alignment and domain information
>cd07958 Anticodon_Ia_Leu_BEm Anticodon-binding domain of bacterial and eukaryotic mitochondrial leucyl tRNA synthetases Back     alignment and domain information
>PF00750 tRNA-synt_1d: tRNA synthetases class I (R); InterPro: IPR015945 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>cd07375 Anticodon_Ia_like Anticodon-binding domain of class Ia aminoacyl tRNA synthetases and similar domains Back     alignment and domain information
>PF01921 tRNA-synt_1f: tRNA synthetases class I (K); InterPro: IPR002904 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>cd00802 class_I_aaRS_core catalytic core domain of class I amino acyl-tRNA synthetase Back     alignment and domain information
>PRK04156 gltX glutamyl-tRNA synthetase; Provisional Back     alignment and domain information
>COG1384 LysS Lysyl-tRNA synthetase (class I) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR00464 gltX_bact glutamyl-tRNA synthetase, bacterial family Back     alignment and domain information
>PRK01406 gltX glutamyl-tRNA synthetase; Reviewed Back     alignment and domain information
>TIGR00463 gltX_arch glutamyl-tRNA synthetase, archaeal and eukaryotic family Back     alignment and domain information
>PRK12558 glutamyl-tRNA synthetase; Provisional Back     alignment and domain information
>PRK12410 glutamylglutaminyl-tRNA synthetase; Provisional Back     alignment and domain information
>PLN03233 putative glutamate-tRNA ligase; Provisional Back     alignment and domain information
>PRK05347 glutaminyl-tRNA synthetase; Provisional Back     alignment and domain information
>PLN02907 glutamate-tRNA ligase Back     alignment and domain information
>PRK14703 glutaminyl-tRNA synthetase/YqeY domain fusion protein; Provisional Back     alignment and domain information
>PLN02627 glutamyl-tRNA synthetase Back     alignment and domain information
>PRK14895 gltX glutamyl-tRNA synthetase; Provisional Back     alignment and domain information
>cd09287 GluRS_non_core catalytic core domain of non-discriminating glutamyl-tRNA synthetase Back     alignment and domain information
>KOG4426 consensus Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR03838 queuosine_YadB glutamyl-queuosine tRNA(Asp) synthetase Back     alignment and domain information
>PTZ00402 glutamyl-tRNA synthetase; Provisional Back     alignment and domain information
>PTZ00437 glutaminyl-tRNA synthetase; Provisional Back     alignment and domain information
>TIGR00440 glnS glutaminyl-tRNA synthetase Back     alignment and domain information
>cd00807 GlnRS_core catalytic core domain of glutaminyl-tRNA synthetase Back     alignment and domain information
>PF00749 tRNA-synt_1c: tRNA synthetases class I (E and Q), catalytic domain; InterPro: IPR020058 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>PLN02859 glutamine-tRNA ligase Back     alignment and domain information
>COG0008 GlnS Glutamyl- and glutaminyl-tRNA synthetases [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK05710 glutamyl-Q tRNA(Asp) synthetase; Reviewed Back     alignment and domain information
>cd00418 GlxRS_core catalytic core domain of glutamyl-tRNA and glutaminyl-tRNA synthetase Back     alignment and domain information
>cd00808 GluRS_core catalytic core domain of discriminating glutamyl-tRNA synthetase Back     alignment and domain information
>KOG1147 consensus Glutamyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>cd07956 Anticodon_Ia_Arg Anticodon-binding domain of arginyl tRNA synthetases Back     alignment and domain information
>KOG1195 consensus Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK13354 tyrosyl-tRNA synthetase; Provisional Back     alignment and domain information
>cd00418 GlxRS_core catalytic core domain of glutamyl-tRNA and glutaminyl-tRNA synthetase Back     alignment and domain information
>COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK05912 tyrosyl-tRNA synthetase; Validated Back     alignment and domain information
>PLN02563 aminoacyl-tRNA ligase Back     alignment and domain information
>cd00805 TyrRS_core catalytic core domain of tyrosinyl-tRNA synthetase Back     alignment and domain information
>PRK14900 valS valyl-tRNA synthetase; Provisional Back     alignment and domain information
>cd00802 class_I_aaRS_core catalytic core domain of class I amino acyl-tRNA synthetase Back     alignment and domain information
>KOG1148 consensus Glutaminyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>cd00395 Tyr_Trp_RS_core catalytic core domain of tyrosinyl-tRNA and tryptophanyl-tRNA synthetase Back     alignment and domain information
>PF00579 tRNA-synt_1b: tRNA synthetases class I (W and Y); InterPro: IPR002305 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>KOG1149 consensus Glutamyl-tRNA synthetase (mitochondrial) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK12556 tryptophanyl-tRNA synthetase; Provisional Back     alignment and domain information
>cd00808 GluRS_core catalytic core domain of discriminating glutamyl-tRNA synthetase Back     alignment and domain information
>PRK12284 tryptophanyl-tRNA synthetase; Reviewed Back     alignment and domain information
>TIGR00396 leuS_bact leucyl-tRNA synthetase, eubacterial and mitochondrial family Back     alignment and domain information
>TIGR00233 trpS tryptophanyl-tRNA synthetase Back     alignment and domain information
>PRK08560 tyrosyl-tRNA synthetase; Validated Back     alignment and domain information
>COG0180 TrpS Tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK00390 leuS leucyl-tRNA synthetase; Validated Back     alignment and domain information
>PRK12282 tryptophanyl-tRNA synthetase II; Reviewed Back     alignment and domain information
>PRK12285 tryptophanyl-tRNA synthetase; Reviewed Back     alignment and domain information
>COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167 Back     alignment and domain information
>cd00806 TrpRS_core catalytic core domain of tryptophanyl-tRNA synthetase Back     alignment and domain information
>PTZ00126 tyrosyl-tRNA synthetase; Provisional Back     alignment and domain information
>PLN02486 aminoacyl-tRNA ligase Back     alignment and domain information
>PRK12285 tryptophanyl-tRNA synthetase; Reviewed Back     alignment and domain information
>TIGR00234 tyrS tyrosyl-tRNA synthetase Back     alignment and domain information
>KOG0435 consensus Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK00927 tryptophanyl-tRNA synthetase; Reviewed Back     alignment and domain information
>cd00806 TrpRS_core catalytic core domain of tryptophanyl-tRNA synthetase Back     alignment and domain information
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan [] Back     alignment and domain information
>cd00395 Tyr_Trp_RS_core catalytic core domain of tyrosinyl-tRNA and tryptophanyl-tRNA synthetase Back     alignment and domain information
>cd00671 ArgRS_core catalytic core domain of arginyl-tRNA synthetases Back     alignment and domain information
>cd00807 GlnRS_core catalytic core domain of glutaminyl-tRNA synthetase Back     alignment and domain information
>PRK12283 tryptophanyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PRK13354 tyrosyl-tRNA synthetase; Provisional Back     alignment and domain information
>cd00805 TyrRS_core catalytic core domain of tyrosinyl-tRNA synthetase Back     alignment and domain information
>PRK08560 tyrosyl-tRNA synthetase; Validated Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query961
1gax_A862 Crystal Structure Of Thermus Thermophilus Valyl-Trn 0.0
1jzq_A821 Isoleucyl-Trna Synthetase Complexed With Isoleucyl- 7e-67
1qu2_A917 Insights Into Editing From An Ile-Trna Synthetase S 2e-64
1wka_A147 Structural Basis For Non-Cognate Amino Acid Discrim 4e-28
1wk9_A146 Structural Basis For Non-Cognate Amino Acid Discrim 1e-27
1wkb_A810 Crystal Structure Of Leucyl-Trna Synthetase From Th 1e-23
1wz2_A967 The Crystal Structure Of Leucyl-Trna Synthetase And 2e-23
4aq7_A880 Ternary Complex Of E. Coli Leucyl-Trna Synthetase, 1e-22
2v0c_A878 Leucyl-Trna Synthetase From Thermus Thermophilus Co 3e-22
1obh_A878 Leucyl-Trna Synthetase From Thermus Thermophilus Co 3e-22
2d54_A502 Crystal Structure Of Methionyl Trna Synthetase Y225 4e-11
1a8h_A500 Methionyl-Trna Synthetase From Thermus Thermophilus 7e-11
1woy_A500 Crystal Structure Of Methionyl Trna Synthetase Y225 7e-11
3ziu_A637 Crystal Structure Of Mycoplasma Mobile Leucyl-trna 2e-10
2x1l_A524 Crystal Structure Of Mycobacterium Smegmatis Methio 4e-10
4dlp_A536 Crystal Structure Of Methionyl-Trna Synthetase Metr 6e-10
3o0a_A219 Crystal Structure Of The Wild Type Cp1 Hydrolitic D 1e-07
3pz0_A221 The Crystal Structure Of Aaleurs-Cp1 Length = 221 1e-07
2ajg_A196 Crystal Structure Of The Editing Domain Of E. Coli 1e-07
4eg5_A542 Trypanosoma Brucei Methionyl-Trna Synthetase In Com 2e-07
4eg5_A542 Trypanosoma Brucei Methionyl-Trna Synthetase In Com 3e-04
4eg1_A542 Trypanosoma Brucei Methionyl-Trna Synthetase In Com 2e-07
4eg1_A542 Trypanosoma Brucei Methionyl-Trna Synthetase In Com 3e-04
3pz5_A201 The Crystal Structure Of Aaleurs-Cp1-D20 Length = 2 2e-07
2csx_A497 Crystal Structure Of Aquifex Aeolicus Methionyl-Trn 2e-07
3tun_A542 Trypanosoma Brucei Methionyl-Trna Synthetase In Com 2e-07
3tun_A542 Trypanosoma Brucei Methionyl-Trna Synthetase In Com 3e-04
1wny_A186 Isoleucyl-Trna Synthetase Editing Domain Length = 1 3e-05
1wk8_A194 Isoleucyl-Trna Synthetase Editing Domain Complexed 3e-05
1ue0_A182 Isoleucyl-Trna Synthetase Editing Domain Complexed 7e-05
1udz_A182 Isoleucyl-Trna Synthetase Editing Domain Length = 1 8e-05
3kfl_A564 Leishmania Major Methionyl-Trna Synthetase In Compl 4e-04
>pdb|1GAX|A Chain A, Crystal Structure Of Thermus Thermophilus Valyl-Trna Synthetase Complexed With Trna(Val) And Valyl-Adenylate Analogue Length = 862 Back     alignment and structure 
Iteration: 1

 Score =  669 bits (1727), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 379/902 (42%), Positives = 531/902 (58%), Gaps = 67/902 (7%)
Query: 59  LPKTFDFTSEERIYNWWESQGYFKPNFERGSDPFVISMPPPNVTGSLHMGHAMFVTLEDI 118
           LPK +D  S E  +    ++  F  N + G  PFVI MPPPNVTGSLHMGHA+  +L+D 
Sbjct: 3   LPKAYDPKSVEPKWAEKWAKNPFVANPKSGKPPFVIFMPPPNVTGSLHMGHALDNSLQDA 62
Query: 119 MVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKYG 178
           ++RY RM+G   +WLPGTDHAGIATQ+VVE++L  EG  R +L R++F +RVW+WKE+ G
Sbjct: 63  LIRYKRMRGFEAVWLPGTDHAGIATQVVVERLLLKEGKTRHDLGREKFLERVWQWKEESG 122
Query: 179 GTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTA 238
           GTI  Q+KRLGAS DW+RE FT+DE+ SRAV  AF R + +GL Y+   +VNW P  +T 
Sbjct: 123 GTILKQLKRLGASADWSREAFTMDEKRSRAVRYAFSRYYHEGLAYRAPRLVNWCPRCETT 182
Query: 239 VSDLEVEYSEEPGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGM 298
           +SDLEVE    PG LY ++Y V G   F+ IAT RPET+F D A+AV+P+DE Y   +G 
Sbjct: 183 LSDLEVETEPTPGKLYTLRYEVEG-GGFIEIATVRPETVFADQAIAVHPEDERYRHLLGK 241
Query: 299 MAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTL 358
            A +P+T    +PI++D  V+K+FGTG LK++P HD  DY +  + GL  ++V+N +G +
Sbjct: 242 RARIPLTEV-WIPILADPAVEKDFGTGALKVTPAHDPLDYEIGERHGLKPVSVINLEGRM 300
Query: 359 --NEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWF 416
               V    RGLDRFEAR+K      E G  VK+E +T+ +    R G  IE  +  QW+
Sbjct: 301 EGERVPEALRGLDRFEARRKAVELFREAGHLVKEEDYTIALATCSRCGTPIEYAIFPQWW 360
Query: 417 VTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYI--- 473
           + M PLAE+ L  + +G++  +PER++K+   WL N+KDW ISRQLWWGH+IP WY    
Sbjct: 361 LRMRPLAEEVLKGLRRGDIAFVPERWKKVNMDWLENVKDWNISRQLWWGHQIPAWYCEDC 420
Query: 474 ----VGKEEEYIVARNADEALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDV 529
               V + E Y+    + EA      K        +D DV DTWFSSALWP STLGWP+ 
Sbjct: 421 QAVNVPRPERYLEDPTSCEACGSPRLK--------RDEDVFDTWFSSALWPLSTLGWPE- 471
Query: 530 SADDFKKFYPTTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSK 589
             +D K FYP  +L TG+DILF WV+RM + G  F G  PF  V LHGL+ D +G+KMSK
Sbjct: 472 ETEDLKAFYPGDVLVTGYDILFLWVSRMEVSGYHFMGERPFKTVLLHGLVLDEKGQKMSK 531
Query: 590 TLGNVIDPIDTIKEFGADALRFT-ISLGTAGQDLSLSIERLTANKAFTNKLWNAGKFIL- 647
           + GNVIDP++ ++ +GADALRF  I L T GQD+ L +  L   + F NKL+NA +F+L 
Sbjct: 532 SKGNVIDPLEMVERYGADALRFALIYLATGGQDIRLDLRWLEMARNFANKLYNAARFVLL 591
Query: 648 --QNLPSQNDISRWEILLAYKFDEEECLCKAPLPECWVVSKLHMLIDTVTASYDKYFFGD 705
             +   ++ D       LA +F               + S+L   ++ +TA Y+      
Sbjct: 592 SREGFQAKEDTP----TLADRF---------------MRSRLSRGVEEITALYEALDLAQ 632
Query: 706 VGRETYDFFWSDFADWYIEASKARLYRSEYDSDAIIAQAVLLYIFENILKLLHPFMPFVT 765
             RE Y+  WS+F DWY+EA+K  L      +   + + + +     +LKLLHP MPF+T
Sbjct: 633 AAREVYELVWSEFCDWYLEAAKPALKAGNAHTLRTLEEVLAV-----LLKLLHPMMPFLT 687
Query: 766 EELWQSLRKRKEALIVSPWPQTSLPRHMSAIKRFENLQSLTRAIRNARAEYSVEPAKRIS 825
            EL+Q+L   KE L +  WP+    R   A + FE L+    A+R  +AE  + PA+ + 
Sbjct: 688 SELYQALTG-KEELALEAWPEPG-GRDEEAERAFEALKQAVTAVRALKAEAGLPPAQEVR 745
Query: 826 ASIVANEEVIQYISKEKEVLALLSRLDLLNVHFTESPPGDANQSVHLVASEGLEAYLPLA 885
             +   E     + +  EV   LSR DLL     E P     +++  V      A +PL 
Sbjct: 746 VYL---EGETAPVEENLEVFRFLSRADLL----PERPAKALVKAMPRVT-----ARMPLE 793
Query: 886 DMVDISAEVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINL 945
            ++D+    +R  KRL ++ +  +    +L+S  F EKAP++VV     +A EA  K NL
Sbjct: 794 GLLDVEEWRRRQEKRLKELLALAERSQRKLASPGFREKAPKEVV-----EAEEARLKENL 848
Query: 946 TK 947
            +
Sbjct: 849 EQ 850
>pdb|1JZQ|A Chain A, Isoleucyl-Trna Synthetase Complexed With Isoleucyl- Adenylate Analogue Length = 821 Back     alignment and structure
>pdb|1QU2|A Chain A, Insights Into Editing From An Ile-Trna Synthetase Structure With Trna(Ile) And Mupirocin Length = 917 Back     alignment and structure
>pdb|1WKA|A Chain A, Structural Basis For Non-Cognate Amino Acid Discrimination By The Valyl-Trna Synthetase Editing Domain Length = 147 Back     alignment and structure
>pdb|1WK9|A Chain A, Structural Basis For Non-Cognate Amino Acid Discrimination By The Valyl-Trna Synthetase Editing Domain Length = 146 Back     alignment and structure
>pdb|1WKB|A Chain A, Crystal Structure Of Leucyl-Trna Synthetase From The Archaeon Pyrococcus Horikoshii Reveals A Novel Editing Domain Orientation Length = 810 Back     alignment and structure
>pdb|1WZ2|A Chain A, The Crystal Structure Of Leucyl-Trna Synthetase And Trna(Leucine) Complex Length = 967 Back     alignment and structure
>pdb|4AQ7|A Chain A, Ternary Complex Of E. Coli Leucyl-Trna Synthetase, Trna(Leu) And Leucyl-Adenylate Analogue In The Aminoacylation Conformation Length = 880 Back     alignment and structure
>pdb|2V0C|A Chain A, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed With A Sulphamoyl Analogue Of Leucyl-Adenylate In The Synthetic Site And An Adduct Of Amp With 5-Fluoro-1,3- Dihydro-1-Hydroxy-2,1-Benzoxaborole (An2690) In The Editing Site Length = 878 Back     alignment and structure
>pdb|1OBH|A Chain A, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed With A Pre-Transfer Editing Substrate Analogue In Both Synthetic Active Site And Editing Site Length = 878 Back     alignment and structure
>pdb|2D54|A Chain A, Crystal Structure Of Methionyl Trna Synthetase Y225a Mutant From Thermus Thermophilus Length = 502 Back     alignment and structure
>pdb|1A8H|A Chain A, Methionyl-Trna Synthetase From Thermus Thermophilus Length = 500 Back     alignment and structure
>pdb|1WOY|A Chain A, Crystal Structure Of Methionyl Trna Synthetase Y225f Mutant From Thermus Thermophilus Length = 500 Back     alignment and structure
>pdb|3ZIU|A Chain A, Crystal Structure Of Mycoplasma Mobile Leucyl-trna Synthetase With Leu-ams In The Active Site Length = 637 Back     alignment and structure
>pdb|2X1L|A Chain A, Crystal Structure Of Mycobacterium Smegmatis Methionyl-Trna Synthetase In Complex With Methionine And Adenosine Length = 524 Back     alignment and structure
>pdb|4DLP|A Chain A, Crystal Structure Of Methionyl-Trna Synthetase Metrs From Brucella Melitensis Bound To Selenomethionine Length = 536 Back     alignment and structure
>pdb|3O0A|A Chain A, Crystal Structure Of The Wild Type Cp1 Hydrolitic Domain From Aquifex Aeolicus Leucyl-Trna Length = 219 Back     alignment and structure
>pdb|3PZ0|A Chain A, The Crystal Structure Of Aaleurs-Cp1 Length = 221 Back     alignment and structure
>pdb|2AJG|A Chain A, Crystal Structure Of The Editing Domain Of E. Coli Leucyl- Trna Synthetase Length = 196 Back     alignment and structure
>pdb|4EG5|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex With Inhibitor Chem 1312 Length = 542 Back     alignment and structure
>pdb|4EG5|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex With Inhibitor Chem 1312 Length = 542 Back     alignment and structure
>pdb|4EG1|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex With Substrate Methionine Length = 542 Back     alignment and structure
>pdb|4EG1|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex With Substrate Methionine Length = 542 Back     alignment and structure
>pdb|3PZ5|A Chain A, The Crystal Structure Of Aaleurs-Cp1-D20 Length = 201 Back     alignment and structure
>pdb|2CSX|A Chain A, Crystal Structure Of Aquifex Aeolicus Methionyl-Trna Synthetase Complexed With Trna(Met) Length = 497 Back     alignment and structure
>pdb|3TUN|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex With Inhibitor Chem 1356 Length = 542 Back     alignment and structure
>pdb|3TUN|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex With Inhibitor Chem 1356 Length = 542 Back     alignment and structure
>pdb|1WNY|A Chain A, Isoleucyl-Trna Synthetase Editing Domain Length = 186 Back     alignment and structure
>pdb|1WK8|A Chain A, Isoleucyl-Trna Synthetase Editing Domain Complexed With The Pre-Transfer Editing Substrate Analogue, Val-Ams Length = 194 Back     alignment and structure
>pdb|1UE0|A Chain A, Isoleucyl-Trna Synthetase Editing Domain Complexed With L- Valine Length = 182 Back     alignment and structure
>pdb|1UDZ|A Chain A, Isoleucyl-Trna Synthetase Editing Domain Length = 182 Back     alignment and structure
>pdb|3KFL|A Chain A, Leishmania Major Methionyl-Trna Synthetase In Complex With Methionyladenylate And Pyrophosphate Length = 564 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query961
1gax_A862 Valrs, valyl-tRNA synthetase; protein-RNA complex, 0.0
1wz2_A967 Leucyl-tRNA synthetase; ligase, riken structural g 1e-164
1wkb_A810 Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, e 1e-144
1ile_A821 Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA s 1e-118
1ffy_A917 Isoleucyl-tRNA synthetase; protein-RNA complex, me 4e-98
1wka_A147 Valyl-tRNA synthetase; editing, CP1, fidelity, the 1e-71
4arc_A880 Leucine--tRNA ligase; ligase-RNA complex, nucleoti 1e-29
4arc_A880 Leucine--tRNA ligase; ligase-RNA complex, nucleoti 6e-15
2v0c_A878 Aminoacyl-tRNA synthetase; ligase, nucleotide-bind 3e-28
2v0c_A878 Aminoacyl-tRNA synthetase; ligase, nucleotide-bind 8e-14
2x1l_A524 Methionyl-tRNA synthetase; nucleotide-binding, pro 2e-20
2x1l_A524 Methionyl-tRNA synthetase; nucleotide-binding, pro 1e-10
2d5b_A500 Methionyl-tRNA synthetase; rossmann fold, class 1A 5e-18
2d5b_A500 Methionyl-tRNA synthetase; rossmann fold, class 1A 9e-11
3tun_A542 Methionyl-tRNA synthetase; aminoacyl-tRNA syntheta 1e-17
3tun_A542 Methionyl-tRNA synthetase; aminoacyl-tRNA syntheta 3e-09
4dlp_A536 Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA 3e-17
4dlp_A536 Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA 4e-10
1rqg_A722 Methionyl-tRNA synthetase; translation, dimerizati 6e-17
1rqg_A722 Methionyl-tRNA synthetase; translation, dimerizati 4e-09
3kfl_A564 Methionyl-tRNA synthetase; parasite, aminoacyl-tRN 3e-16
3kfl_A564 Methionyl-tRNA synthetase; parasite, aminoacyl-tRN 9e-10
2csx_A497 Methionyl-tRNA synthetase; ligase, riken structura 1e-15
2csx_A497 Methionyl-tRNA synthetase; ligase, riken structura 3e-10
2ajg_A196 Leucyl-tRNA synthetase; editing domain, ligase; 2. 3e-14
2wfg_A261 Cytosolic leucyl-tRNA synthetase; ligase, editing 6e-14
1wny_A186 Isoleucyl-tRNA synthetase; ligase, structural geno 2e-13
3pz6_A311 Leurs, leucyl-tRNA synthetase; editing domain, gll 7e-13
3o0a_A219 Leucyl-tRNA synthetase subunit alpha; CP1 hydrolyt 1e-12
3h99_A560 Methionyl-tRNA synthetase; rossmann fold, aminoacy 2e-12
3h99_A560 Methionyl-tRNA synthetase; rossmann fold, aminoacy 4e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-08
2wfd_A252 Leucyl-tRNA synthetase, cytoplasmic; aminoacyl-tRN 6e-10
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A Length = 862 Back     alignment and structure
 Score = 1339 bits (3467), Expect = 0.0
 Identities = 368/899 (40%), Positives = 526/899 (58%), Gaps = 44/899 (4%)

Query: 59  LPKTFDFTS-EERIYNWWESQGYFKPNFERGSDPFVISMPPPNVTGSLHMGHAMFVTLED 117
           LPK +D  S E +    W  +  F  N + G  PFVI MPPPNVTGSLHMGHA+  +L+D
Sbjct: 3   LPKAYDPKSVEPKWAEKWA-KNPFVANPKSGKPPFVIFMPPPNVTGSLHMGHALDNSLQD 61

Query: 118 IMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKY 177
            ++RY RM+G   +WLPGTDHAGIATQ+VVE++L  EG  R +L R++F +RVW+WKE+ 
Sbjct: 62  ALIRYKRMRGFEAVWLPGTDHAGIATQVVVERLLLKEGKTRHDLGREKFLERVWQWKEES 121

Query: 178 GGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQT 237
           GGTI  Q+KRLGAS DW+RE FT+DE+ SRAV  AF R + +GL Y+   +VNW P  +T
Sbjct: 122 GGTILKQLKRLGASADWSREAFTMDEKRSRAVRYAFSRYYHEGLAYRAPRLVNWCPRCET 181

Query: 238 AVSDLEVEYSEEPGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIG 297
            +SDLEVE    PG LY ++Y V G   F+ IAT RPET+F D A+AV+P+DE Y   +G
Sbjct: 182 TLSDLEVETEPTPGKLYTLRYEVEG-GGFIEIATVRPETVFADQAIAVHPEDERYRHLLG 240

Query: 298 MMAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGT 357
             A +P+T    +PI++D  V+K+FGTG LK++P HD  DY +  + GL  ++V+N +G 
Sbjct: 241 KRARIPLT-EVWIPILADPAVEKDFGTGALKVTPAHDPLDYEIGERHGLKPVSVINLEGR 299

Query: 358 LNE--VAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQW 415
           +    V    RGLDRFEAR+K      E G  VK+E +T+ +    R G  IE  +  QW
Sbjct: 300 MEGERVPEALRGLDRFEARRKAVELFREAGHLVKEEDYTIALATCSRCGTPIEYAIFPQW 359

Query: 416 FVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVG 475
           ++ M PLAE+ L  + +G++  +PER++K+   WL N+KDW ISRQLWWGH+IP WY   
Sbjct: 360 WLRMRPLAEEVLKGLRRGDIAFVPERWKKVNMDWLENVKDWNISRQLWWGHQIPAWY-CE 418

Query: 476 KEEEYIVARNADEALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFK 535
             +   V R      +    +   +  + +D DV DTWFSSALWP STLGWP+   +D K
Sbjct: 419 DCQAVNVPRPERYLEDPTSCEACGSPRLKRDEDVFDTWFSSALWPLSTLGWPE-ETEDLK 477

Query: 536 KFYPTTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVI 595
            FYP  +L TG+DILF WV+RM + G  F G  PF  V LHGL+ D +G+KMSK+ GNVI
Sbjct: 478 AFYPGDVLVTGYDILFLWVSRMEVSGYHFMGERPFKTVLLHGLVLDEKGQKMSKSKGNVI 537

Query: 596 DPIDTIKEFGADALRFTISLG-TAGQDLSLSIERLTANKAFTNKLWNAGKFILQNLPSQN 654
           DP++ ++ +GADALRF +    T GQD+ L +  L   + F NKL+NA +F+L +     
Sbjct: 538 DPLEMVERYGADALRFALIYLATGGQDIRLDLRWLEMARNFANKLYNAARFVLLSRE--- 594

Query: 655 DISRWEILLAYKFDEEECLCKAPLPECWVVSKLHMLIDTVTASYDKYFFGDVGRETYDFF 714
                     ++  E+       L + ++ S+L   ++ +TA Y+        RE Y+  
Sbjct: 595 ---------GFQAKEDT----PTLADRFMRSRLSRGVEEITALYEALDLAQAAREVYELV 641

Query: 715 WSDFADWYIEASKARLYRSEYDSDAIIAQAVLLYIFENILKLLHPFMPFVTEELWQSLRK 774
           WS+F DWY+EA+K  L      +        L  +   +LKLLHP MPF+T EL+Q+L  
Sbjct: 642 WSEFCDWYLEAAKPALK-----AGNAHTLRTLEEVLAVLLKLLHPMMPFLTSELYQAL-T 695

Query: 775 RKEALIVSPWPQTSLPRHMSAIKRFENLQSLTRAIRNARAEYSVEPAKRISASIVANEEV 834
            KE L +  WP+    R   A + FE L+    A+R  +AE  + PA+ +   +      
Sbjct: 696 GKEELALEAWPEPG-GRDEEAERAFEALKQAVTAVRALKAEAGLPPAQEVRVYLEGETAP 754

Query: 835 IQYISKEKEVLALLSRLDLLNVHFTESPPGDANQSVHLVASEGLEAYLPLADMVDISAEV 894
           ++      EV   LSR DLL     E P     +++       + A +PL  ++D+    
Sbjct: 755 VEEN---LEVFRFLSRADLL----PERPAKALVKAM-----PRVTARMPLEGLLDVEEWR 802

Query: 895 QRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFL 953
           +R  KRL ++ +  +    +L+S  F EKAP++VV   + +  E  E+    +  L+ +
Sbjct: 803 RRQEKRLKELLALAERSQRKLASPGFREKAPKEVVEAEEARLKENLEQAERIREALSQI 861
>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiativ structural genomics, ligase-RNA complex; 3.21A {Pyrococcus horikoshii} Length = 967 Back     alignment and structure
>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii} Length = 810 Back     alignment and structure
>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A* Length = 821 Back     alignment and structure
>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing tRNA synthetase, double-sieve, ligase/RNA, mupiroci; HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A* Length = 917 Back     alignment and structure
>1wka_A Valyl-tRNA synthetase; editing, CP1, fidelity, thermus thrmophilus, translation, amino acid, structural genomics; 1.70A {Thermus thermophilus} SCOP: b.51.1.1 PDB: 1wk9_A* Length = 147 Back     alignment and structure
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A* Length = 880 Back     alignment and structure
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A* Length = 880 Back     alignment and structure
>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A* Length = 878 Back     alignment and structure
>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A* Length = 878 Back     alignment and structure
>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A* Length = 524 Back     alignment and structure
>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A* Length = 524 Back     alignment and structure
>2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A 2d54_A Length = 500 Back     alignment and structure
>2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A 2d54_A Length = 500 Back     alignment and structure
>3tun_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs, parasite, protein-IN complex, translation, nucleotide binding; HET: C13; 2.55A {Trypanosoma brucei} Length = 542 Back     alignment and structure
>3tun_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs, parasite, protein-IN complex, translation, nucleotide binding; HET: C13; 2.55A {Trypanosoma brucei} Length = 542 Back     alignment and structure
>4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class IA:methionyl-tRNA...; structural genomics; 2.65A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} Length = 536 Back     alignment and structure
>4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class IA:methionyl-tRNA...; structural genomics; 2.65A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} Length = 536 Back     alignment and structure
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1 Length = 722 Back     alignment and structure
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1 Length = 722 Back     alignment and structure
>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major} Length = 564 Back     alignment and structure
>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major} Length = 564 Back     alignment and structure
>2csx_A Methionyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus} PDB: 2ct8_A* Length = 497 Back     alignment and structure
>2csx_A Methionyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus} PDB: 2ct8_A* Length = 497 Back     alignment and structure
>2ajg_A Leucyl-tRNA synthetase; editing domain, ligase; 2.00A {Escherichia coli} PDB: 2ajh_A 2aji_A Length = 196 Back     alignment and structure
>2wfg_A Cytosolic leucyl-tRNA synthetase; ligase, editing domain, hydrolysis of MIS-charged trnas, benzoxaborole, anti-fungal; HET: ZZB; 2.20A {Candida albicans} PDB: 2wfe_A* Length = 261 Back     alignment and structure
>1wny_A Isoleucyl-tRNA synthetase; ligase, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Thermus thermophilus} PDB: 1wnz_A* 1wk8_A* 1udz_A 1ue0_A Length = 186 Back     alignment and structure
>3pz6_A Leurs, leucyl-tRNA synthetase; editing domain, glleurs_CP1, ligase; 2.60A {Giardia intestinalis} Length = 311 Back     alignment and structure
>3o0a_A Leucyl-tRNA synthetase subunit alpha; CP1 hydrolytic DOM ligase, aminoacyl-tRNA synthetase, ATP-binding, nucleotide- protein biosynthesis; 1.77A {Aquifex aeolicus} PDB: 3pz0_A 3pz5_A Length = 219 Back     alignment and structure
>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, ligas binding, nucleotide-binding, protein biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A Length = 560 Back     alignment and structure
>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, ligas binding, nucleotide-binding, protein biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A Length = 560 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2wfd_A Leucyl-tRNA synthetase, cytoplasmic; aminoacyl-tRNA synthetase, phosphoprotein, editing domain, nucleotide-binding, hydrolysis of MIS-charged trnas; 3.25A {Homo sapiens} Length = 252 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query961
1gax_A862 Valrs, valyl-tRNA synthetase; protein-RNA complex, 100.0
1ffy_A917 Isoleucyl-tRNA synthetase; protein-RNA complex, me 100.0
1ile_A821 Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA s 100.0
1wz2_A967 Leucyl-tRNA synthetase; ligase, riken structural g 100.0
4arc_A880 Leucine--tRNA ligase; ligase-RNA complex, nucleoti 100.0
2v0c_A878 Aminoacyl-tRNA synthetase; ligase, nucleotide-bind 100.0
1wkb_A810 Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, e 100.0
3u1f_A542 Methionyl-tRNA synthetase; aminoacyl-tRNA syntheta 100.0
1rqg_A722 Methionyl-tRNA synthetase; translation, dimerizati 100.0
3h99_A560 Methionyl-tRNA synthetase; rossmann fold, aminoacy 100.0
3kfl_A564 Methionyl-tRNA synthetase; parasite, aminoacyl-tRN 100.0
4dlp_A536 Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA 100.0
2x1l_A524 Methionyl-tRNA synthetase; nucleotide-binding, pro 100.0
2d5b_A500 Methionyl-tRNA synthetase; rossmann fold, class 1A 100.0
2csx_A497 Methionyl-tRNA synthetase; ligase, riken structura 100.0
3tqo_A462 Cysteinyl-tRNA synthetase; protein synthesis, liga 100.0
3sp1_A501 Cysteinyl-tRNA synthetase; structural genomics, se 100.0
3c8z_A414 Cysteinyl-tRNA synthetase; cysteine ligase, rossma 100.0
1li5_A461 Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys 100.0
1wka_A147 Valyl-tRNA synthetase; editing, CP1, fidelity, the 100.0
1wny_A186 Isoleucyl-tRNA synthetase; ligase, structural geno 100.0
2ajg_A196 Leucyl-tRNA synthetase; editing domain, ligase; 2. 99.97
3fnr_A464 Arginyl-tRNA synthetase; transferase, PSI-2, NYSGX 99.97
3o0a_A219 Leucyl-tRNA synthetase subunit alpha; CP1 hydrolyt 99.97
2wfg_A261 Cytosolic leucyl-tRNA synthetase; ligase, editing 99.95
2zue_A629 Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase 99.95
1iq0_A592 Arginyl-tRNA synthetase; riken structural genomics 99.95
2wfd_A252 Leucyl-tRNA synthetase, cytoplasmic; aminoacyl-tRN 99.94
3pz6_A311 Leurs, leucyl-tRNA synthetase; editing domain, gll 99.93
1irx_A523 Lysyl-tRNA synthetase; beta sandwitch, zinc-bindin 99.91
1f7u_A607 Arginyl-tRNA synthetase; RNA-protein complex, amin 99.83
3aii_A553 Glutamyl-tRNA synthetase; amino-acyl tRNA syntheta 99.06
2o5r_A481 Glutamyl-tRNA synthetase 1; TM1351, EC 6.1.1.17, g 99.03
2cfo_A492 Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA s 98.9
2hz7_A851 Glutaminyl-tRNA synthetase; rossmann fold, GLNRS c 98.84
3al0_C592 Glutamyl-tRNA(Gln) amidotransferase subunit C, GL 98.81
2ja2_A498 Glutamyl-tRNA synthetase; non-discriminating gluta 98.8
1j09_A468 Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, r 98.77
1qtq_A553 GLNRS, protein (glutaminyl-tRNA synthetase); gluta 98.76
3afh_A488 Glutamyl-tRNA synthetase 2; protein-substrate comp 98.71
4g6z_A490 Glutamate-tRNA ligase; aminoacyl-tRNA synthetase, 98.59
1nzj_A298 Hypothetical protein YADB; Zn cluster, glutamyl T- 97.76
2cyb_A323 Tyrosyl-tRNA synthetase; rossmann-fold, structural 97.13
4gri_A512 Glutamate--tRNA ligase; structural genomics, seatt 97.12
2lw1_A89 ABC transporter ATP-binding protein UUP; ABC REG s 95.7
2yxn_A322 Tyrosyl-tRNA synthetase; tRNA synthetases class I, 95.38
1jil_A420 Tyrrs, tyrosyl-tRNA synthetase; truncation, based 95.32
1y42_X392 Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tR 95.15
2g36_A340 Tryptophanyl-tRNA synthetase; TM0492, structural g 95.05
2jan_A432 Tyrosyl-tRNA synthetase; protein biosynthesis, ami 95.04
2ts1_A419 Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30 94.95
1h3f_A432 Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA sy 94.83
2pid_A356 Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase 94.81
3tzl_A322 Tryptophanyl-tRNA synthetase; structural genomics, 94.74
1n3l_A372 Tyrosyl-tRNA synthetase; rossmann fold AS catalyti 94.1
2el7_A337 Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synth 93.42
1yi8_B351 Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2. 93.35
2dlc_X394 Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligas 92.9
4arc_A 880 Leucine--tRNA ligase; ligase-RNA complex, nucleoti 92.87
2zp1_A314 Tyrosyl-tRNA synthetase; tRNA synthetases class I, 92.82
3vgj_A373 Tyrosyl-tRNA synthetase, putative; tyrrs, ligase; 92.11
3viq_B85 Mating-type switching protein SWI5; recombination 91.89
2v0c_A 878 Aminoacyl-tRNA synthetase; ligase, nucleotide-bind 91.84
3i05_A395 Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP 91.82
2ip1_A432 Tryptophanyl-tRNA synthetase; rossmann fold, struc 91.54
2cya_A364 Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, st 91.29
1r6u_A437 Tryptophanyl-tRNA synthetase; class IC tRNA synthe 90.83
3jxe_A392 Tryptophanyl-tRNA synthetase; adenosine triphospha 90.65
3hv0_A393 Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-bin 90.54
1i6k_A328 TRPRS, tryptophanyl-tRNA synthetase; class I tRNA 90.45
3tze_A406 Tryptophanyl-tRNA synthetase; structural genomics, 90.33
2yy5_A348 Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synt 90.1
2j5b_A348 Tyrosyl-tRNA synthetase; ligase, protein biosynthe 89.98
1r6t_A477 Tryptophanyl-tRNA synthetase; class IC tRNA synthe 89.8
3tzl_A322 Tryptophanyl-tRNA synthetase; structural genomics, 89.39
3hzr_A386 Tryptophanyl-tRNA synthetase; APO tRNA-ligase, str 89.18
3p0j_A690 Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase 87.56
2cyc_A375 Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacy 86.66
1nzj_A298 Hypothetical protein YADB; Zn cluster, glutamyl T- 86.0
2cyb_A323 Tyrosyl-tRNA synthetase; rossmann-fold, structural 85.41
3sz3_A341 Tryptophanyl-tRNA synthetase; structural genomics, 83.7
3hv0_A393 Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-bin 82.91
3n9i_A346 Tryptophanyl-tRNA synthetase; tryptophan-tRNA liga 82.64
3foc_A451 Tryptophanyl-tRNA synthetase; structural genomics, 82.39
2cya_A364 Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, st 82.16
3hzr_A386 Tryptophanyl-tRNA synthetase; APO tRNA-ligase, str 81.86
2dlc_X394 Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligas 81.63
1i6k_A328 TRPRS, tryptophanyl-tRNA synthetase; class I tRNA 81.57
2ke4_A98 CDC42-interacting protein 4; CIP4, TC10, coiled-co 80.68
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A Back     alignment and structure
Probab=100.00  E-value=5.5e-194  Score=1775.41  Aligned_cols=854  Identities=43%  Similarity=0.768  Sum_probs=792.1

Q ss_pred             CCCCCCCh-hhHHHHHHHHHhCCCCCCCCCCCCCCEEEeCCCCCcCCCCCCchhhHhHHHHHHHHHHHHcCCCeeecCCC
Q 002136           58 TLPKTFDF-TSEERIYNWWESQGYFKPNFERGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGT  136 (961)
Q Consensus        58 ~~~~~~~~-~~E~~~~~~W~~~~~f~~~~~~~~~~f~i~~ppPy~nG~LHiGHa~~~~~~Di~~R~~rm~G~~Vl~~~G~  136 (961)
                      +|++.||| ++|++||++|++ ++|++..+.++++|+|++|||||||.||||||+|+|++|+++||+||+||+|+|++||
T Consensus         2 ~~~~~y~~~~~E~~~~~~W~~-~~f~~~~~~~~~~f~i~~ppPy~nG~lHiGHa~~~~l~Dii~Ry~rm~G~~vl~~~G~   80 (862)
T 1gax_A            2 DLPKAYDPKSVEPKWAEKWAK-NPFVANPKSGKPPFVIFMPPPNVTGSLHMGHALDNSLQDALIRYKRMRGFEAVWLPGT   80 (862)
T ss_dssp             CCCSSCCGGGTHHHHHHHHHH-SCCCCCTTCCSCEEEEECCCCBSSSCCCHHHHHHHHHHHHHHHHHHTTTSEEEEECEE
T ss_pred             CCccCCChHHHHHHHHHHHHh-CCCccCcCCCCCcEEEEcCCCCCCCCcchhhhHHHHHHHHHHHHHHhCCCcccccccc
Confidence            58899999 899999999999 9999987667889999999999999999999999999999999999999999999999


Q ss_pred             CCCCchHHHHHHHHHHHcCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCccCCCCCccCCChhhHHHHHHHHHHH
Q 002136          137 DHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRL  216 (961)
Q Consensus       137 D~~Gl~~q~~vek~l~~~g~~~~~~~~~~f~~~~~~~~~~~~~~i~~~l~~lG~s~Dw~r~~~T~d~~~~~~v~~~F~~L  216 (961)
                      ||||+|||.+|++.+.+.|++++++||++|++.||+|++++++.|++||++||+|+||+|+|+|||+.|+++|+++|.+|
T Consensus        81 D~~Glp~e~~vek~l~~~g~~~~~~~~~~f~~~~~~~~~~~~~~~~~q~~rlG~s~Dw~r~~~T~d~~~~~~v~~~F~~L  160 (862)
T 1gax_A           81 DHAGIATQVVVERLLLKEGKTRHDLGREKFLERVWQWKEESGGTILKQLKRLGASADWSREAFTMDEKRSRAVRYAFSRY  160 (862)
T ss_dssp             BCCTHHHHHHHHTTTTTTTSCCSCCCTTHHHHHHHHHHHHHHHHHHHHHHHTTCCCCGGGCEETTSHHHHHHHHHHHHHH
T ss_pred             CCCCcHHHHHHHHHHHHcCCChHHcCHHHHHHHHHHHHHHHHHHHHHHHHHhCccccCCCCcccCCHHHHHHHHHHHHHH
Confidence            99999999999998888899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcCceEEcCeeeecCCCCCccccccccccccCCCeEEEEEEEecCCCeeEEEEecCCCccCCCcEEEECCCCchhhhhc
Q 002136          217 HEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEEPGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFI  296 (961)
Q Consensus       217 ~~~GlIy~~~~~v~w~p~~~t~lsd~Ev~~~e~~~~~~~~~~~~~~~~~~l~v~TtrPeTl~g~~av~v~P~~~~y~~l~  296 (961)
                      |++|||||+.++|+|||.|+|+|||+||+|++..|.++||+|++.++ .+|+|||||||||+||+||||||+|+||++|+
T Consensus       161 ~~kGliYrg~~~v~wcp~~~T~Lsd~EV~~~e~~g~~~~v~f~~~~~-~~l~v~TTrPeTl~g~~avav~P~~~ry~~l~  239 (862)
T 1gax_A          161 YHEGLAYRAPRLVNWCPRCETTLSDLEVETEPTPGKLYTLRYEVEGG-GFIEIATVRPETVFADQAIAVHPEDERYRHLL  239 (862)
T ss_dssp             HTTSSEEEECCEEEEETTTTEEECGGGEEECCEEEEEEEEECCCSSS-CCCEEEESCSGGGTTCCCEEECSSCCTTCSCT
T ss_pred             HHCCCEEecccccccCCCcCccccccccccccccceEEEEEEEecCC-CEEEEEeCCccccccceEEEECCCccHHHHHc
Confidence            99999999999999999999999999999999999999999999876 79999999999999999999999999999999


Q ss_pred             cCeeeccCCCCCeeeeeecCccccCCCcceeEeCCCCChhHHHHHHHhCCCceeecCCCCcccccc--cccCCCchHHHH
Q 002136          297 GMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVA--GLFRGLDRFEAR  374 (961)
Q Consensus       297 g~~~~~P~~~~~~ipii~~~~V~~~~GTG~v~~~Pah~~~D~~~~~~~~l~~~~~~~~~G~~~~~~--g~~~G~~~~~ar  374 (961)
                      |+++.+|+ .++.+||++|+||++++|||+||+|||||++||++|++||||+++++|++|+++++|  |.|.||++++||
T Consensus       240 G~~~~~P~-~~~~ipii~~~~V~~~~GTG~V~~~Pahd~~D~~~~~~~~L~~~~~id~~G~~~~~~~~g~~~Gl~~~~a~  318 (862)
T 1gax_A          240 GKRARIPL-TEVWIPILADPAVEKDFGTGALKVTPAHDPLDYEIGERHGLKPVSVINLEGRMEGERVPEALRGLDRFEAR  318 (862)
T ss_dssp             TCCCBCTT-CCCBCCEEECTTCCTTSSSSEEECCGGGCHHHHHHHHHTTCCCCCSBCTTSBBCSSSSCTTTSSSBSSHHH
T ss_pred             CCEEECCC-CCCeeeEEeccccccCCCCcceEecCCCCchHHHHHHHcCCCccceeCCCCccccccCCcccCCcCHHHHH
Confidence            99999999 589999999999999999999999999999999999999999999999999999999  999999999999


Q ss_pred             HHHHHHHHHcCCccccccccccCCcccCCCCceeeeeccceeeeccHHHHHHHHHHHcCCceeechhHHHHHHHHHhcCC
Q 002136          375 KKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSNIK  454 (961)
Q Consensus       375 ~~i~~~L~~~g~~~~~~~~~~~~p~~~r~~~~v~~~~~~qwF~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~wl~~l~  454 (961)
                      ++|+++|++.|++.+.+++.|++|+|||||++|++++++||||+++++++++++++++++++|+|+++++++.+||++++
T Consensus       319 ~~iv~~L~~~g~l~~~~~~~h~~p~c~R~~~~i~~~~~~qWFv~~~~~~~~~l~~v~~~~~~~~P~~~~~~~~~wl~~l~  398 (862)
T 1gax_A          319 RKAVELFREAGHLVKEEDYTIALATCSRCGTPIEYAIFPQWWLRMRPLAEEVLKGLRRGDIAFVPERWKKVNMDWLENVK  398 (862)
T ss_dssp             HHHHHHHHTTTCEEEEEEEEECCEEETTTCSBCCEEECCEEEECHHHHHHHHHHHHHHTCCEESSSHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHhCCCeeeeccccccCCeecCCCCeEEEEecceEEEEhHHHHHHHHHHHHcCCceEcCHHHHHHHHHHHhccc
Confidence            99999999999999999999999999999999999999999999999999999999989999999999999999999999


Q ss_pred             CceeeeccCCCcccceEEEcCCcccEEEecChHHHHHH--HHhhcCCCcccccCCCceeeeecCCCccccccCCCCCChh
Q 002136          455 DWCISRQLWWGHRIPVWYIVGKEEEYIVARNADEALEK--AHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSAD  532 (961)
Q Consensus       455 DW~ISRq~~WG~pIP~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~dvldtWf~S~l~~~~~~~~p~~~~~  532 (961)
                      |||||||||||||||+|+|++ ++...+.. .+++...  ....||. ..++|++|||||||||++||++++|||.++ +
T Consensus       399 DW~ISRqr~WG~pIP~w~~~~-~~~i~v~~-~~~l~~~~~~~~~~g~-~~~~r~~DvlDtWfdS~~~~~~~~~~p~~~-~  474 (862)
T 1gax_A          399 DWNISRQLWWGHQIPAWYCED-CQAVNVPR-PERYLEDPTSCEACGS-PRLKRDEDVFDTWFSSALWPLSTLGWPEET-E  474 (862)
T ss_dssp             CCCCBCCCSSSCCCCCEEETT-TCCEECCC-GGGTTCCCCSCTTTCC-SCEEECCCCBCHHHHHTSCTTGGGTTTSCC-H
T ss_pred             ceeEecccCCCcccCceecCC-CCEEEEec-cccccccchhhhhcCc-hheecCCcccceeeccCCcchhhccCCCch-H
Confidence            999999999999999999964 34444443 1110000  1123443 268999999999999999999999999776 7


Q ss_pred             HHhhcCCcceEeeeccccccHHHHHHHHHhHhcCCCCceEEEEeceEEcCCCccccccCCCccCchhhhhhcChhHHHHH
Q 002136          533 DFKKFYPTTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFT  612 (961)
Q Consensus       533 ~~~~~~P~d~~~~G~Dil~fw~~~~i~~~~~l~~~~Pfk~v~~hg~v~d~~G~KMSKS~GNvI~p~dii~~yGaDalR~~  612 (961)
                      +|++|||+|++++|+||+|||+++|+++++.+.|+.||++|++||+|+|.+|+|||||+||+|+|.++|++||+|++|||
T Consensus       475 ~~~~~~P~d~~v~G~Dii~~W~a~~~~~~~~~~g~~Pfk~v~~hG~vld~~G~KMSKSlGNvIdP~dli~~yGaDalR~~  554 (862)
T 1gax_A          475 DLKAFYPGDVLVTGYDILFLWVSRMEVSGYHFMGERPFKTVLLHGLVLDEKGQKMSKSKGNVIDPLEMVERYGADALRFA  554 (862)
T ss_dssp             HHHHSCSBSCEEEEGGGTTTTHHHHHHHHHHHSSSCSBSEEEEECCEECTTSCBCCTTTTCCCCHHHHHHHHCHHHHHHH
T ss_pred             HHHhhCCceEEecCccccccHHHHHHHHHHHhcCCCcccEEEEeeeEEcCCCCCccccCCCCCCHHHHHHHcChHHHHHH
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhCCC-CCccccCHHHHHHHHHHHHHHHHHHHHHHhhCCCCCchhhHHHHHhhccchhhhhcCCCchhHHHHHHHHHHH
Q 002136          613 ISLGTA-GQDLSLSIERLTANKAFTNKLWNAGKFILQNLPSQNDISRWEILLAYKFDEEECLCKAPLPECWVVSKLHMLI  691 (961)
Q Consensus       613 L~~~~~-~~D~~f~~~~~~~~~~~~nkl~N~~rf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~~  691 (961)
                      |++.++ ++|++|+++.+++.++|+|++||++||+.+++.++.+.                ...++..|+||+++++.++
T Consensus       555 ll~~~~~~~D~~fs~~~l~~~~~f~nkl~N~~rf~~~~~~~~~~~----------------~~~~~~~D~~il~~l~~~~  618 (862)
T 1gax_A          555 LIYLATGGQDIRLDLRWLEMARNFANKLYNAARFVLLSREGFQAK----------------EDTPTLADRFMRSRLSRGV  618 (862)
T ss_dssp             HHHHCCTTCCEECCHHHHHHHHHHHHHHHHHHHHHHHHSSSCCCC----------------BCCCCHHHHHHHHHHHHHH
T ss_pred             HHhcCCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHhcccCCCCc----------------cccCCHHHHHHHHHHHHHH
Confidence            998766 99999999999999999999999999999887543210                0235678999999999999


Q ss_pred             HHHHHhhhcCChHHHHHHHHHHHHHhhhHHHHHHhhhhhccCCChHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHHHH
Q 002136          692 DTVTASYDKYFFGDVGRETYDFFWSDFADWYIEASKARLYRSEYDSDAIIAQAVLLYIFENILKLLHPFMPFVTEELWQS  771 (961)
Q Consensus       692 ~~v~~a~e~~~f~~A~~~i~~f~~~~~~n~Yle~~K~~l~~~~~~~~~~~~~~~l~~vl~~~l~LL~Pf~P~itEeiw~~  771 (961)
                      ++++++|++|+|+.|++.+++|+|+++||||++.+|+|++++     +++++.+++++|+.+++||||||||+|||||+.
T Consensus       619 ~~v~~a~e~~~f~~A~~~l~~f~~~~~~n~Yie~~k~~l~~~-----~~~~~~~l~~~l~~~~~lL~P~~P~~aEeiw~~  693 (862)
T 1gax_A          619 EEITALYEALDLAQAAREVYELVWSEFCDWYLEAAKPALKAG-----NAHTLRTLEEVLAVLLKLLHPMMPFLTSELYQA  693 (862)
T ss_dssp             HHHHHHHTTTCHHHHHHHHHHHHHHHTTTTHHHHHHHHHHTT-----BHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHH
T ss_pred             HHHHHHHHccCHHHHHHHHHHHHHHHhhHHHHHHcchhhhcc-----HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHh
Confidence            999999999999999999999999999999999999998753     356788999999999999999999999999999


Q ss_pred             hcCCCCceeecCCCCCCCCCChHHHHHHHHHHHHHHHHHhhhhhcccCCCceeeEEEEcCHHHHHHHHhHHHHHHHHcCC
Q 002136          772 LRKRKEALIVSPWPQTSLPRHMSAIKRFENLQSLTRAIRNARAEYSVEPAKRISASIVANEEVIQYISKEKEVLALLSRL  851 (961)
Q Consensus       772 L~~~~~si~~~~wP~~~~~~d~~~~~~~~~~~~~v~~ir~~r~~~~i~~~~~~~~~i~~~~~~~~~~~~~~~~i~~l~~~  851 (961)
                      |+. ++||+.++||+.+ ..|+.+++.++.++++++++|++|++++|++++++.+++. + +. +.++....+|+.++++
T Consensus       694 L~~-~~sv~~~~wP~~~-~~d~~~~~~~~~~~~v~~~~r~~r~~~~i~~~~~~~~~v~-~-~~-~~~~~~~~~i~~~~~~  768 (862)
T 1gax_A          694 LTG-KEELALEAWPEPG-GRDEEAERAFEALKQAVTAVRALKAEAGLPPAQEVRVYLE-G-ET-APVEENLEVFRFLSRA  768 (862)
T ss_dssp             HHC-CSCGGGSCCCCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHTCCTTCCEEEEEE-E-SC-HHHHHTHHHHHHHHCE
T ss_pred             cCC-CCeEEecCCCCCC-cCCHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCeeEEEEe-C-hH-HHHHHHHHHHHHHhCc
Confidence            985 4699999999987 4688999999999999999999999999999999987765 2 33 5667777889999876


Q ss_pred             ccccEEeecCCCCCCCCcEEEEecCCeEEEecCCCccChHHHHHHHHHHHHHHHHHHHHHHhHhcCchhhccCCHHHHHH
Q 002136          852 DLLNVHFTESPPGDANQSVHLVASEGLEAYLPLADMVDISAEVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRG  931 (961)
Q Consensus       852 ~~~~v~~~~~~~~~~~~~v~~~v~~~~~~~~~l~~~id~~~e~~rl~k~~~kl~~~~~~~~~kl~n~~f~~kap~~vv~~  931 (961)
                      ..  +   .   +.|.+++..+ .++.++++++.|.+|+++|++||+|++++++++++++++||+||+|++|||++||++
T Consensus       769 ~~--~---~---~~~~~~~~~~-~~~~~~~~~~~~~~d~~~~~~rl~k~~~~~~~~~~~~~~~l~~~~f~~~ap~~~~~~  839 (862)
T 1gax_A          769 DL--L---P---ERPAKALVKA-MPRVTARMPLEGLLDVEEWRRRQEKRLKELLALAERSQRKLASPGFREKAPKEVVEA  839 (862)
T ss_dssp             EE--C---S---SCCSSEEEEE-CSSEEEEEECCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTTSSSSCTTHHHH
T ss_pred             cc--c---c---cccccceEEe-cCCcEEEEEeccccCHHHHHHHHHHHHHHHHHHHHHHHhhccCchhhhhCCHHHHHH
Confidence            43  2   1   1356777754 478999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q 002136          932 VQEKAAEAEEKINLTKNRLAFL  953 (961)
Q Consensus       932 ~~~kl~~~~~~l~~~~~~l~~l  953 (961)
                      +|+|++++++++++++++|+.|
T Consensus       840 ~~~~~~~~~~~~~~~~~~~~~~  861 (862)
T 1gax_A          840 EEARLKENLEQAERIREALSQI  861 (862)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHhc
Confidence            9999999999999999999876
>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing tRNA synthetase, double-sieve, ligase/RNA, mupiroci; HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A* Back     alignment and structure
>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A* Back     alignment and structure
>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiativ structural genomics, ligase-RNA complex; 3.21A {Pyrococcus horikoshii} Back     alignment and structure
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A* Back     alignment and structure
>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A* Back     alignment and structure
>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii} Back     alignment and structure
>3u1f_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs, parasite, protein-IN complex, rossmann-fold, translation; HET: 392; 2.20A {Trypanosoma brucei} PDB: 3u1e_A* 3u1g_A* 3u20_A* 4eg1_A 4eg3_A* 4eg6_A* 4eg8_A* 4eg5_A* 3tun_A* 3u1z_A* 4eg4_A* 4eg7_A* 4ega_A* Back     alignment and structure
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1 Back     alignment and structure
>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, ligas binding, nucleotide-binding, protein biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A Back     alignment and structure
>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major} Back     alignment and structure
>4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class IA:methionyl-tRNA...; structural genomics; 2.65A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} Back     alignment and structure
>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A* Back     alignment and structure
>2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A 2d54_A Back     alignment and structure
>2csx_A Methionyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus} PDB: 2ct8_A* Back     alignment and structure
>3tqo_A Cysteinyl-tRNA synthetase; protein synthesis, ligase; 2.30A {Coxiella burnetii} Back     alignment and structure
>3sp1_A Cysteinyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, LYME disease; HET: AMP; 2.55A {Borrelia burgdorferi} Back     alignment and structure
>3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium smegmatis} Back     alignment and structure
>1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine, E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1 c.26.1.1 PDB: 1li7_A 1u0b_B Back     alignment and structure
>1wka_A Valyl-tRNA synthetase; editing, CP1, fidelity, thermus thrmophilus, translation, amino acid, structural genomics; 1.70A {Thermus thermophilus} SCOP: b.51.1.1 PDB: 1wk9_A* Back     alignment and structure
>1wny_A Isoleucyl-tRNA synthetase; ligase, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Thermus thermophilus} PDB: 1wnz_A* 1wk8_A* 1udz_A 1ue0_A Back     alignment and structure
>2ajg_A Leucyl-tRNA synthetase; editing domain, ligase; 2.00A {Escherichia coli} PDB: 2ajh_A 2aji_A Back     alignment and structure
>3fnr_A Arginyl-tRNA synthetase; transferase, PSI-2, NYSGXRC, struc genomics, protein structure initiative; 2.20A {Campylobacter jejuni} Back     alignment and structure
>3o0a_A Leucyl-tRNA synthetase subunit alpha; CP1 hydrolytic DOM ligase, aminoacyl-tRNA synthetase, ATP-binding, nucleotide- protein biosynthesis; 1.77A {Aquifex aeolicus} PDB: 3pz0_A 3pz5_A Back     alignment and structure
>2wfg_A Cytosolic leucyl-tRNA synthetase; ligase, editing domain, hydrolysis of MIS-charged trnas, benzoxaborole, anti-fungal; HET: ZZB; 2.20A {Candida albicans} PDB: 2wfe_A* Back     alignment and structure
>2zue_A Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding, protein biosynthesis, ligase/RNA complex; HET: ANP; 2.00A {Pyrococcus horikoshii} PDB: 2zuf_A Back     alignment and structure
>1iq0_A Arginyl-tRNA synthetase; riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; 2.30A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 Back     alignment and structure
>2wfd_A Leucyl-tRNA synthetase, cytoplasmic; aminoacyl-tRNA synthetase, phosphoprotein, editing domain, nucleotide-binding, hydrolysis of MIS-charged trnas; 3.25A {Homo sapiens} Back     alignment and structure
>3pz6_A Leurs, leucyl-tRNA synthetase; editing domain, glleurs_CP1, ligase; 2.60A {Giardia intestinalis} Back     alignment and structure
>1irx_A Lysyl-tRNA synthetase; beta sandwitch, zinc-binding structure, rossmann fold, alpha-helix CAGE; 2.60A {Pyrococcus horikoshii} SCOP: a.97.1.2 c.26.1.1 Back     alignment and structure
>1f7u_A Arginyl-tRNA synthetase; RNA-protein complex, aminoacylation; HET: PSU 1MG 2MG H2U M2G 5MC 5MU 1MA ARG; 2.20A {Saccharomyces cerevisiae} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 PDB: 1bs2_A* 1f7v_A* Back     alignment and structure
>3aii_A Glutamyl-tRNA synthetase; amino-acyl tRNA synthetase, ligase; 1.65A {Methanothermobacter thermautotrophicusorganism_taxid} Back     alignment and structure
>2o5r_A Glutamyl-tRNA synthetase 1; TM1351, EC 6.1.1.17, glutamate-T ligase 1, glurs 1, structural genomics, joint center for ST genomics, JCSG; 2.34A {Thermotoga maritima} Back     alignment and structure
>2cfo_A Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, nucleotide-B; HET: GLU; 2.45A {Synechococcus elongatus} Back     alignment and structure
>2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus radiodurans} Back     alignment and structure
>3al0_C Glutamyl-tRNA(Gln) amidotransferase subunit C, GL tRNA synthetase 2; protein-RNA complex, ligase-RNA complex; HET: GSU; 3.37A {Thermotoga maritima} Back     alignment and structure
>2ja2_A Glutamyl-tRNA synthetase; non-discriminating glutamyl-tRNA aminoacylation, protein biosynthesis, aminoacyl-tRNA synthetase, ligase; 1.65A {Mycobacterium tuberculosis} PDB: 3pny_A 3pnv_A Back     alignment and structure
>1j09_A Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLU ATP; 1.80A {Thermus thermophilus} SCOP: a.97.1.1 c.26.1.1 PDB: 1n75_A* 1n77_A* 1n78_A* 2cuz_A* 2cv0_A* 2cv1_A* 2cv2_A* 2dxi_A* 1g59_A 1gln_A Back     alignment and structure
>1qtq_A GLNRS, protein (glutaminyl-tRNA synthetase); glutamine, trnaGln, E. coli, complex, ligase/RNA complex; HET: QSI; 2.25A {Escherichia coli} SCOP: b.53.1.2 c.26.1.1 PDB: 1gsg_P* 1gts_A* 1gtr_A* 1zjw_A* 1o0b_A* 1o0c_A* 1qru_A* 1qrs_A* 1qrt_A* 1euy_A* 1euq_A* 1exd_A* 2rd2_A* 2re8_A* 1nyl_A Back     alignment and structure
>3afh_A Glutamyl-tRNA synthetase 2; protein-substrate complex, aminoacyl-tRNA synthetase, ATP-binding, ligase, nucleotide-binding; HET: GSU; 2.00A {Thermotoga maritima} PDB: 3akz_B* Back     alignment and structure
>4g6z_A Glutamate-tRNA ligase; aminoacyl-tRNA synthetase, AARS, class 1B AARS, ATP-dependen charging, protein synthesis, structural genomics; HET: GLU; 2.05A {Burkholderia thailandensis} Back     alignment and structure
>1nzj_A Hypothetical protein YADB; Zn cluster, glutamyl T-RNA synthetase, structural genomics, unknown function; 1.50A {Escherichia coli} SCOP: c.26.1.1 PDB: 2zlz_A* 4a91_A* Back     alignment and structure
>2cyb_A Tyrosyl-tRNA synthetase; rossmann-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: TYR; 1.80A {Archaeoglobus fulgidus} Back     alignment and structure
>4gri_A Glutamate--tRNA ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, aminoacyl-tRNA synthetase; HET: GLU; 2.60A {Borrelia burgdorferi} Back     alignment and structure
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli} Back     alignment and structure
>2yxn_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: AZY; 1.80A {Escherichia coli str} PDB: 1wq3_A* 1wq4_A* 1x8x_A* 1vbn_A* 1vbm_A* Back     alignment and structure
>1jil_A Tyrrs, tyrosyl-tRNA synthetase; truncation, based inhibitor design, ligase; HET: 485; 2.20A {Staphylococcus aureus} SCOP: c.26.1.1 PDB: 1jij_A* 1jii_A* 1jik_A* Back     alignment and structure
>1y42_X Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tRNA ligase, group I intron; HET: TYR; 1.95A {Neurospora crassa} PDB: 2rkj_A Back     alignment and structure
>2g36_A Tryptophanyl-tRNA synthetase; TM0492, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI, ligase; HET: TRP; 2.50A {Thermotoga maritima} Back     alignment and structure
>2jan_A Tyrosyl-tRNA synthetase; protein biosynthesis, aminoacyl-tRNA synthetase, tyrrs, ligase, tyrosine, RNA-binding, ATP-binding; 2.9A {Mycobacterium tuberculosis} Back     alignment and structure
>2ts1_A Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 3ts1_A* 1tyd_E* 1tya_E* 1tyc_A 1tyb_E* 4ts1_A* 1jh3_A Back     alignment and structure
>1h3f_A Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase; HET: TYE; 2.00A {Thermus thermophilus} SCOP: c.26.1.1 d.66.1.4 PDB: 1h3e_A* Back     alignment and structure
>2pid_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, protein-substrate complex, ATP-BI ligase, mitochondrion, nucleotide-binding, protein biosynth; HET: YSA; 2.20A {Homo sapiens} PDB: 3zxi_A* Back     alignment and structure
>3tzl_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta structure; HET: ADP TRP; 2.15A {Campylobacter jejuni subsp} SCOP: c.26.1.0 PDB: 3m5w_A* Back     alignment and structure
>1n3l_A Tyrosyl-tRNA synthetase; rossmann fold AS catalytic domain, unique anticodon recognit domain, dimer, ligase; 1.18A {Homo sapiens} SCOP: c.26.1.1 PDB: 1q11_A* Back     alignment and structure
>2el7_A Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synthetase, translation, structural GEN NPPSFA; 2.50A {Thermus thermophilus} Back     alignment and structure
>1yi8_B Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.10A {Deinococcus radiodurans} PDB: 1yia_B* 1yid_B* 2a4m_A* Back     alignment and structure
>2dlc_X Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligase-tRNA complex; HET: 2MG OMG M2G PSU 6IA 5MC 5MU 1MA YMP; 2.40A {Saccharomyces cerevisiae} Back     alignment and structure
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A* Back     alignment and structure
>2zp1_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding; HET: IYR; 1.70A {Methanocaldococcus jannaschii} PDB: 1zh6_A* 1j1u_A* 1u7d_A 2q1g_A* 2pxh_A* 1zh0_A* 2q1i_A* 2ag6_A* 3qe4_A* 3d6u_A* 3d6v_A* 1u7x_A 3n2y_A* 2hgz_A* Back     alignment and structure
>3vgj_A Tyrosyl-tRNA synthetase, putative; tyrrs, ligase; HET: YAP; 2.21A {Plasmodium falciparum} Back     alignment and structure
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A* Back     alignment and structure
>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A* Back     alignment and structure
>3i05_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, LIG nucleotide-binding, protein biosynthesis; 2.80A {Trypanosoma brucei} SCOP: c.26.1.0 Back     alignment and structure
>2ip1_A Tryptophanyl-tRNA synthetase; rossmann fold, structural genomics, PSI-2, protein structure initiative; HET: PG4; 1.80A {Saccharomyces cerevisiae} PDB: 3kt0_A* 3kt3_A* 3kt6_A* 3kt8_A* Back     alignment and structure
>2cya_A Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, structural genomics, NPPSFA, national on protein structural and functional analyses; 2.20A {Aeropyrum pernix} Back     alignment and structure
>1r6u_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytic domain, AN recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.00A {Homo sapiens} SCOP: c.26.1.1 PDB: 1ulh_A 2dr2_A* 2ake_A* 1o5t_A Back     alignment and structure
>3jxe_A Tryptophanyl-tRNA synthetase; adenosine triphosphate, rossmann fold, crystallography, X-RAY, P. horikoshii, aminoacyl-tRNA synthetase; HET: TYM; 3.00A {Pyrococcus horikoshii} Back     alignment and structure
>3hv0_A Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, ligase, nucleotide-binding; HET: TRP; 2.42A {Cryptosporidium parvum iowa II} SCOP: c.26.1.0 Back     alignment and structure
>1i6k_A TRPRS, tryptophanyl-tRNA synthetase; class I tRNA synthetase, AARS, induced FIT, ligase; HET: TYM; 1.72A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 1i6l_A* 1i6m_A* 1m83_A* 1mau_A* 1maw_A* 1mb2_A* 2ov4_A* 3fhj_A* 3fi0_A* 1d2r_A 3u1v_A Back     alignment and structure
>3tze_A Tryptophanyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, amino acylation; HET: TRP; 2.60A {Encephalitozoon cuniculi} Back     alignment and structure
>2yy5_A Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synthetase, structural genomics, NPPSFA; HET: WSA; 2.55A {Mycoplasma pneumoniae} Back     alignment and structure
>2j5b_A Tyrosyl-tRNA synthetase; ligase, protein biosynthesis, ATP-binding; HET: TYE; 2.20A {Acanthamoeba polyphaga mimivirus} Back     alignment and structure
>1r6t_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytical domain, recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.10A {Homo sapiens} SCOP: a.16.1.3 c.26.1.1 PDB: 2azx_A* 2quh_A* 2qui_A* 2quj_A* 2quk_A Back     alignment and structure
>3tzl_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta structure; HET: ADP TRP; 2.15A {Campylobacter jejuni subsp} SCOP: c.26.1.0 PDB: 3m5w_A* Back     alignment and structure
>3hzr_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, structural genomics, medical structural GEN pathogenic protozoa, MSGPP, ligase; 3.00A {Entamoeba histolytica} Back     alignment and structure
>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A* Back     alignment and structure
>2cyc_A Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacylation, structural genomics; HET: TYR; 2.20A {Pyrococcus horikoshii} Back     alignment and structure
>1nzj_A Hypothetical protein YADB; Zn cluster, glutamyl T-RNA synthetase, structural genomics, unknown function; 1.50A {Escherichia coli} SCOP: c.26.1.1 PDB: 2zlz_A* 4a91_A* Back     alignment and structure
>2cyb_A Tyrosyl-tRNA synthetase; rossmann-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: TYR; 1.80A {Archaeoglobus fulgidus} Back     alignment and structure
>3sz3_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, rossmann fold; HET: TRP; 1.50A {Vibrio cholerae o1 biovar el tor} Back     alignment and structure
>3hv0_A Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, ligase, nucleotide-binding; HET: TRP; 2.42A {Cryptosporidium parvum iowa II} SCOP: c.26.1.0 Back     alignment and structure
>3n9i_A Tryptophanyl-tRNA synthetase; tryptophan-tRNA ligase, csgid, structural genomics, niaid, center for structural genomics infectious diseases; 1.95A {Yersinia pestis} SCOP: c.26.1.1 Back     alignment and structure
>3foc_A Tryptophanyl-tRNA synthetase; structural genomics, giardiasi aminoacyl-tRNA synthetase, ligase; 2.09A {Giardia lamblia atcc 50803} Back     alignment and structure
>2cya_A Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, structural genomics, NPPSFA, national on protein structural and functional analyses; 2.20A {Aeropyrum pernix} Back     alignment and structure
>3hzr_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, structural genomics, medical structural GEN pathogenic protozoa, MSGPP, ligase; 3.00A {Entamoeba histolytica} Back     alignment and structure
>2dlc_X Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligase-tRNA complex; HET: 2MG OMG M2G PSU 6IA 5MC 5MU 1MA YMP; 2.40A {Saccharomyces cerevisiae} Back     alignment and structure
>1i6k_A TRPRS, tryptophanyl-tRNA synthetase; class I tRNA synthetase, AARS, induced FIT, ligase; HET: TYM; 1.72A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 1i6l_A* 1i6m_A* 1m83_A* 1mau_A* 1maw_A* 1mb2_A* 2ov4_A* 3fhj_A* 3fi0_A* 1d2r_A 3u1v_A Back     alignment and structure
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 961
d1h3na3494 c.26.1.1 (A:1-225,A:418-686) Leucyl-tRNA synthetas 2e-70
d1ivsa4425 c.26.1.1 (A:1-189,A:343-578) Valyl-tRNA synthetase 6e-55
d1ivsa4425 c.26.1.1 (A:1-189,A:343-578) Valyl-tRNA synthetase 6e-51
d1ilea3452 c.26.1.1 (A:1-197,A:387-641) Isoleucyl-tRNA synthe 1e-48
d1ilea3452 c.26.1.1 (A:1-197,A:387-641) Isoleucyl-tRNA synthe 5e-38
d1ffya3450 c.26.1.1 (A:1-200,A:395-644) Isoleucyl-tRNA synthe 9e-44
d1ffya3450 c.26.1.1 (A:1-200,A:395-644) Isoleucyl-tRNA synthe 8e-37
d1wkaa1143 b.51.1.1 (A:195-337) Valyl-tRNA synthetase (ValRS) 6e-32
d1ffya2194 b.51.1.1 (A:201-394) Isoleucyl-tRNA synthetase (Il 2e-27
d1pfva2350 c.26.1.1 (A:4-140,A:176-388) Methionyl-tRNA synthe 2e-23
d1pfva2350 c.26.1.1 (A:4-140,A:176-388) Methionyl-tRNA synthe 1e-17
d2d5ba2348 c.26.1.1 (A:1-348) Methionyl-tRNA synthetase (MetR 3e-22
d2d5ba2348 c.26.1.1 (A:1-348) Methionyl-tRNA synthetase (MetR 1e-19
d1ivsa2218 a.27.1.1 (A:579-796) Valyl-tRNA synthetase (ValRS) 7e-22
d1ilea1180 a.27.1.1 (A:642-821) Isoleucyl-tRNA synthetase (Il 1e-21
d1h3na2192 b.51.1.1 (A:226-417) Leucyl-tRNA synthetase (LeuRS 1e-21
d1udza_179 b.51.1.1 (A:) Isoleucyl-tRNA synthetase (IleRS) {T 6e-20
d1rqga2361 c.26.1.1 (A:1-138,A:174-396) Methionyl-tRNA synthe 2e-17
d1rqga2361 c.26.1.1 (A:1-138,A:174-396) Methionyl-tRNA synthe 4e-17
d1ffya1273 a.27.1.1 (A:645-917) Isoleucyl-tRNA synthetase (Il 5e-16
d1ivsa166 a.2.7.3 (A:797-862) Valyl-tRNA synthetase (ValRS) 4e-15
d1li5a2315 c.26.1.1 (A:1-315) Cysteinyl-tRNA synthetase (CysR 2e-11
d1h3na1128 a.27.1.1 (A:687-814) Leucyl-tRNA synthetase (LeuRS 6e-10
d1irxa2317 c.26.1.1 (A:3-319) Class I lysyl-tRNA synthetase { 2e-08
d1irxa2317 c.26.1.1 (A:3-319) Class I lysyl-tRNA synthetase { 6e-06
d2d5ba1152 a.27.1.1 (A:349-500) Methionyl-tRNA synthetase (Me 3e-04
d1rqga1210 a.27.1.1 (A:397-606) Methionyl-tRNA synthetase (Me 9e-04
>d1h3na3 c.26.1.1 (A:1-225,A:418-686) Leucyl-tRNA synthetase (LeuRS) {Thermus thermophilus [TaxId: 274]} Length = 494 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Leucyl-tRNA synthetase (LeuRS)
species: Thermus thermophilus [TaxId: 274]

 Score =  240 bits (613), Expect = 2e-70
 Identities = 93/575 (16%), Positives = 162/575 (28%), Gaps = 89/575 (15%)

Query: 61  KTFDFTS-EERIYNWWESQGYFKPNFERGSDP-FVISMPPPNVTGSLHMGHAMFVTLEDI 118
           + ++  + E +   +WE +G+ K     G      + +  P  +G LHMGH    T+ D+
Sbjct: 2   EKYNPHAIEAKWQRFWEEKGFMKAKDLPGGRGKQYVLVMFPYPSGDLHMGHLKNYTMGDV 61

Query: 119 MVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKYG 178
           + R+ RM+G   L   G D  G+  +    K                F     +W     
Sbjct: 62  LARFRRMQGYEVLHPMGWDAFGLPAENAALK----------------FGVHPKDWTYANI 105

Query: 179 GTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTA 238
                 ++ +G   DW RE  T + +  R     F+++ EKGL Y+   +VNW P  QT 
Sbjct: 106 RQAKESLRLMGILYDWDREVTTCEPEYYRWNQWIFLKMWEKGLAYRAKGLVNWCPKCQTV 165

Query: 239 VSDLEVEYSEEPGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGM 298
           +++ +V              +      +L I       L           +         
Sbjct: 166 LANEQVVEGRCWRHEDTPVEKRELEQWYLRITAYAERLLKD--------LEGLNWPEKVK 217

Query: 299 MAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTL 358
                        +IS +         ++                + LP L         
Sbjct: 218 AMQRAWIGRLRDWLIS-RQRYWGTPIPMVHCEACGVVPVPEEELPVLLPDLK-------- 268

Query: 359 NEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVI-EPLVSKQWFV 417
                     D  + R K  S LE         P        + GG    +      +F 
Sbjct: 269 ----------DVEDIRPKGKSPLE-------AHPEFYETTCPKCGGPAKRDTDTMDTFF- 310

Query: 418 TMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKE 477
                                       Y  +     D            +PV   +G  
Sbjct: 311 -----------------------DSSWYYLRYTDPHNDRLPFDPEKANAWMPVDQYIGGV 347

Query: 478 EEYIVARNADEALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKKF 537
           E  ++         K          + +  +     F+  +    T   P        + 
Sbjct: 348 EHAVLHLLYSRFFTKFLHDL----GMVKVEEPFQGLFTQGMVLAWTDFGPVEVEGSVVRL 403

Query: 538 YPTTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDP 597
              T +          +  +  MG E          +  G +   +   MSK+ GN +  
Sbjct: 404 PEPTRIRLEIPESALSLEDVRKMGAEL-------RPHEDGTLHLWKPAVMSKSKGNGVMV 456

Query: 598 IDTIKEFGADALRFTI-SLGTAGQDLSLSIERLTA 631
              +KE GAD  R TI        ++  + E +  
Sbjct: 457 GPFVKEQGADIARITILFAAPPENEMVWTEEGVQG 491
>d1ivsa4 c.26.1.1 (A:1-189,A:343-578) Valyl-tRNA synthetase (ValRS) {Thermus thermophilus [TaxId: 274]} Length = 425 Back     information, alignment and structure
>d1ivsa4 c.26.1.1 (A:1-189,A:343-578) Valyl-tRNA synthetase (ValRS) {Thermus thermophilus [TaxId: 274]} Length = 425 Back     information, alignment and structure
>d1ilea3 c.26.1.1 (A:1-197,A:387-641) Isoleucyl-tRNA synthetase (IleRS) {Thermus thermophilus [TaxId: 274]} Length = 452 Back     information, alignment and structure
>d1ilea3 c.26.1.1 (A:1-197,A:387-641) Isoleucyl-tRNA synthetase (IleRS) {Thermus thermophilus [TaxId: 274]} Length = 452 Back     information, alignment and structure
>d1ffya3 c.26.1.1 (A:1-200,A:395-644) Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus aureus [TaxId: 1280]} Length = 450 Back     information, alignment and structure
>d1ffya3 c.26.1.1 (A:1-200,A:395-644) Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus aureus [TaxId: 1280]} Length = 450 Back     information, alignment and structure
>d1wkaa1 b.51.1.1 (A:195-337) Valyl-tRNA synthetase (ValRS) {Thermus thermophilus [TaxId: 274]} Length = 143 Back     information, alignment and structure
>d1ffya2 b.51.1.1 (A:201-394) Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus aureus [TaxId: 1280]} Length = 194 Back     information, alignment and structure
>d1pfva2 c.26.1.1 (A:4-140,A:176-388) Methionyl-tRNA synthetase (MetRS) {Escherichia coli [TaxId: 562]} Length = 350 Back     information, alignment and structure
>d1pfva2 c.26.1.1 (A:4-140,A:176-388) Methionyl-tRNA synthetase (MetRS) {Escherichia coli [TaxId: 562]} Length = 350 Back     information, alignment and structure
>d2d5ba2 c.26.1.1 (A:1-348) Methionyl-tRNA synthetase (MetRS) {Thermus thermophilus [TaxId: 274]} Length = 348 Back     information, alignment and structure
>d2d5ba2 c.26.1.1 (A:1-348) Methionyl-tRNA synthetase (MetRS) {Thermus thermophilus [TaxId: 274]} Length = 348 Back     information, alignment and structure
>d1ivsa2 a.27.1.1 (A:579-796) Valyl-tRNA synthetase (ValRS) {Thermus thermophilus [TaxId: 274]} Length = 218 Back     information, alignment and structure
>d1ilea1 a.27.1.1 (A:642-821) Isoleucyl-tRNA synthetase (IleRS) {Thermus thermophilus [TaxId: 274]} Length = 180 Back     information, alignment and structure
>d1h3na2 b.51.1.1 (A:226-417) Leucyl-tRNA synthetase (LeuRS) {Thermus thermophilus [TaxId: 274]} Length = 192 Back     information, alignment and structure
>d1udza_ b.51.1.1 (A:) Isoleucyl-tRNA synthetase (IleRS) {Thermus thermophilus [TaxId: 274]} Length = 179 Back     information, alignment and structure
>d1rqga2 c.26.1.1 (A:1-138,A:174-396) Methionyl-tRNA synthetase (MetRS) {Pyrococcus abyssi [TaxId: 29292]} Length = 361 Back     information, alignment and structure
>d1rqga2 c.26.1.1 (A:1-138,A:174-396) Methionyl-tRNA synthetase (MetRS) {Pyrococcus abyssi [TaxId: 29292]} Length = 361 Back     information, alignment and structure
>d1ffya1 a.27.1.1 (A:645-917) Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus aureus [TaxId: 1280]} Length = 273 Back     information, alignment and structure
>d1ivsa1 a.2.7.3 (A:797-862) Valyl-tRNA synthetase (ValRS) C-terminal domain {Thermus thermophilus [TaxId: 274]} Length = 66 Back     information, alignment and structure
>d1li5a2 c.26.1.1 (A:1-315) Cysteinyl-tRNA synthetase (CysRS) {Escherichia coli [TaxId: 562]} Length = 315 Back     information, alignment and structure
>d1h3na1 a.27.1.1 (A:687-814) Leucyl-tRNA synthetase (LeuRS) {Thermus thermophilus [TaxId: 274]} Length = 128 Back     information, alignment and structure
>d1irxa2 c.26.1.1 (A:3-319) Class I lysyl-tRNA synthetase {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 317 Back     information, alignment and structure
>d1irxa2 c.26.1.1 (A:3-319) Class I lysyl-tRNA synthetase {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 317 Back     information, alignment and structure
>d2d5ba1 a.27.1.1 (A:349-500) Methionyl-tRNA synthetase (MetRS) {Thermus thermophilus [TaxId: 274]} Length = 152 Back     information, alignment and structure
>d1rqga1 a.27.1.1 (A:397-606) Methionyl-tRNA synthetase (MetRS) {Pyrococcus abyssi [TaxId: 29292]} Length = 210 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query961
d1ffya3450 Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus 100.0
d1ivsa4425 Valyl-tRNA synthetase (ValRS) {Thermus thermophilu 100.0
d1ilea3452 Isoleucyl-tRNA synthetase (IleRS) {Thermus thermop 100.0
d1h3na3494 Leucyl-tRNA synthetase (LeuRS) {Thermus thermophil 100.0
d1rqga2361 Methionyl-tRNA synthetase (MetRS) {Pyrococcus abys 100.0
d1pfva2350 Methionyl-tRNA synthetase (MetRS) {Escherichia col 100.0
d2d5ba2348 Methionyl-tRNA synthetase (MetRS) {Thermus thermop 100.0
d1wkaa1143 Valyl-tRNA synthetase (ValRS) {Thermus thermophilu 100.0
d1ivsa2218 Valyl-tRNA synthetase (ValRS) {Thermus thermophilu 100.0
d1udza_179 Isoleucyl-tRNA synthetase (IleRS) {Thermus thermop 99.98
d1ffya2194 Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus 99.97
d1li5a2315 Cysteinyl-tRNA synthetase (CysRS) {Escherichia col 99.97
d1h3na2192 Leucyl-tRNA synthetase (LeuRS) {Thermus thermophil 99.97
d1ilea1180 Isoleucyl-tRNA synthetase (IleRS) {Thermus thermop 99.97
d1ffya1273 Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus 99.93
d1irxa2317 Class I lysyl-tRNA synthetase {Archaeon Pyrococcus 99.86
d1h3na1128 Leucyl-tRNA synthetase (LeuRS) {Thermus thermophil 99.74
d1f7ua2348 Arginyl-tRNA synthetase (ArgRS) {Baker's yeast (Sa 99.61
d1iq0a2370 Arginyl-tRNA synthetase (ArgRS) {Thermus thermophi 99.53
d1ivsa166 Valyl-tRNA synthetase (ValRS) C-terminal domain {T 99.44
d1rqga1210 Methionyl-tRNA synthetase (MetRS) {Pyrococcus abys 99.43
d2d5ba1152 Methionyl-tRNA synthetase (MetRS) {Thermus thermop 99.16
d1pfva1162 Methionyl-tRNA synthetase (MetRS) {Escherichia col 99.16
d1j09a2305 Glutamyl-tRNA synthetase (GluRS) {Thermus thermoph 98.91
d1nzja_286 Glutamyl-Q tRNA-Asp synthetase YadB {Escherichia c 97.58
d1gtra2331 Glutaminyl-tRNA synthetase (GlnRS) {Escherichia co 97.35
d1jila_323 Tyrosyl-tRNA synthetase (TyrRS) {Staphylococcus au 95.11
d1h3fa1343 Tyrosyl-tRNA synthetase (TyrRS) {Thermus thermophi 94.6
d1j1ua_306 Tyrosyl-tRNA synthetase (TyrRS) {Archaeon Methanoc 92.08
d2ts1a_319 Tyrosyl-tRNA synthetase (TyrRS) {Bacillus stearoth 91.28
d1r6ta2386 Tryptophanyl-tRNA synthetase (TrpRS) {Human (Homo 83.29
d1f7ua1124 Arginyl-tRNA synthetase (ArgRS) {Baker's yeast (Sa 82.02
d1lrza165 Methicillin resistance protein FemA probable tRNA- 81.91
d1n3la_339 Tyrosyl-tRNA synthetase (TyrRS) {Human (Homo sapie 80.17
>d1ffya3 c.26.1.1 (A:1-200,A:395-644) Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Isoleucyl-tRNA synthetase (IleRS)
species: Staphylococcus aureus [TaxId: 1280]

Probab=100.00  E-value=3.4e-90  Score=804.45  Aligned_cols=410  Identities=27%  Similarity=0.493  Sum_probs=363.9

Q ss_pred             CCCCCCh-hhHHHHHHHHHhCCCCCCCC--CCCCCCEEEeCCCCCcCCCCCCchhhHhHHHHHHHHHHHHcCCCeeecCC
Q 002136           59 LPKTFDF-TSEERIYNWWESQGYFKPNF--ERGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPG  135 (961)
Q Consensus        59 ~~~~~~~-~~E~~~~~~W~~~~~f~~~~--~~~~~~f~i~~ppPy~nG~LHiGHa~~~~~~Di~~R~~rm~G~~Vl~~~G  135 (961)
                      +|.++|+ ++|++||++|+++++|++..  ++++++|+|++|||||||.||||||++++++||++||+||+||+|+|++|
T Consensus        14 f~~~~~~~~~E~~~~~~W~~~~~~~~~~~~~~~~~~f~~~~~pPy~nG~lHiGH~~~~~~~Dv~~Ry~rm~G~~V~~~~G   93 (450)
T d1ffya3          14 FPMRGGLPNKEPQIQEKWDAEDQYHKALEKNKGNETFILHDGPPYANGNLHMGHALNKILKDFIVRYKTMQGFYAPYVPG   93 (450)
T ss_dssp             CCSSCCHHHHHHHHHHHHHHTTHHHHHHHHTTTSCBCCEECCCCBSSSCCCHHHHHHHHHHHHHHHHHHTTTCBCCCCCE
T ss_pred             CCCCCChHHHHHHHHHHHHHCCCccccccccCCCCcEEEecCCCCCCCchhhhHHHHHHHHHHHHHHHHhcCCccccccc
Confidence            4455787 88999999999999998643  34568899999999999999999999999999999999999999999999


Q ss_pred             CCCCCchHHHHHHHHHHHcCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCccCCCCCccCCChhhHHHHHHHHHH
Q 002136          136 TDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIR  215 (961)
Q Consensus       136 ~D~~Gl~~q~~vek~l~~~g~~~~~~~~~~f~~~~~~~~~~~~~~i~~~l~~lG~s~Dw~r~~~T~d~~~~~~v~~~F~~  215 (961)
                      |||||+|||.++    .+.|.++.++++++|.+.|++|+.++++.+++++++||+++||+++|+|+|+.|.++|+++|.+
T Consensus        94 ~D~~G~pie~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~D~~~~~~T~~~~~~~~v~~~f~~  169 (450)
T d1ffya3          94 WDTHGLPIEQAL----TKKGVDRKKMSTAEFREKCKEFALEQIELQKKDFRRLGVRGDFNDPYITLKPEYEAAQIRIFGE  169 (450)
T ss_dssp             EBCCSHHHHHHH----HHHTCCSTTTCHHHHHHHHHHHHHHHHHHHHHHHHTTTCCSCTTSCEETTSHHHHHHHHHHHHH
T ss_pred             cccCCcHHHHHH----HhhCCccccccHHHHhhhcchhhhhhhhhHHHHHHHHhhhcccccccccccHHHHHHHHHHHHH
Confidence            999999987655    4558899999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhcCceEEcCeeeecCCCCCccccccccccccCCCeEEEEEEEecCCCeeEEEEecCCCccCCCcEEEECCCCchhhhh
Q 002136          216 LHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEEPGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQF  295 (961)
Q Consensus       216 L~~~GlIy~~~~~v~w~p~~~t~lsd~Ev~~~e~~~~~~~~~~~~~~~~~~l~v~TtrPeTl~g~~av~v~P~~~~y~~l  295 (961)
                      |+++|+||++.++|+|||.|+|+++++|++                                                  
T Consensus       170 l~~~G~iy~~~~~v~~~p~~~~~~~~~e~~--------------------------------------------------  199 (450)
T d1ffya3         170 MADKGLIYKGKKPVYWSPSSESSLAEAEIE--------------------------------------------------  199 (450)
T ss_dssp             HHHTTCEEEEEEEEEEETTTTEECCGGGEE--------------------------------------------------
T ss_pred             HHHcCCeeccccccccccccCccccccccc--------------------------------------------------
Confidence            999999999999999999999999998773                                                  


Q ss_pred             ccCeeeccCCCCCeeeeeecCccccCCCcceeEeCCCCChhHHHHHHHhCCCceeecCCCCcccccccccCCCchHHHHH
Q 002136          296 IGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARK  375 (961)
Q Consensus       296 ~g~~~~~P~~~~~~ipii~~~~V~~~~GTG~v~~~Pah~~~D~~~~~~~~l~~~~~~~~~G~~~~~~g~~~G~~~~~ar~  375 (961)
                                                                                                      
T Consensus       200 --------------------------------------------------------------------------------  199 (450)
T d1ffya3         200 --------------------------------------------------------------------------------  199 (450)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHHHHHcCCccccccccccCCcccCCCCceeeeeccceeeeccHHHHHHHHHHHcCCceeechhHHHHHHHHHhcCCC
Q 002136          376 KLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSNIKD  455 (961)
Q Consensus       376 ~i~~~L~~~g~~~~~~~~~~~~p~~~r~~~~v~~~~~~qwF~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~wl~~l~D  455 (961)
                                           +|.|+||+.+++.+.++|||+++..+++.+++.+.  .+.+.|+..+.++..|+++++|
T Consensus       200 ---------------------~~~~~r~~~~~~~~~~~qwf~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~D  256 (450)
T d1ffya3         200 ---------------------YPHDWRTKKPVIFRATPQWFASISKVRQDILDAIE--NTNFKVNWGKTRIYNMVRDRGE  256 (450)
T ss_dssp             ---------------------EEEETTTCCBCEEEEEEEEEECHHHHHHHHHHHHH--TSEESSHHHHHHHHHHHHHCCC
T ss_pred             ---------------------ccccccccCCceeeccccceeccccccccchhhcc--cccccccccceeeeccccCccc
Confidence                                 25689999999999999999999999999999987  4778999999999999999999


Q ss_pred             ceeeeccCCCcccceEEEcCCcccEEEecChHHHHHHHH--------------h----hc----CCCcccccCCCceeee
Q 002136          456 WCISRQLWWGHRIPVWYIVGKEEEYIVARNADEALEKAH--------------Q----KY----GKNVEIYQDPDVLDTW  513 (961)
Q Consensus       456 W~ISRq~~WG~pIP~~~~~~~~~~~~~~~~~~~~~~~~~--------------~----~~----~~~~~~~~~~dvldtW  513 (961)
                      ||||||++||+|||+|+|..  +..+.............              .    .+    ..+..+.+++||+|+|
T Consensus       257 w~iSRqr~WG~piP~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvld~w  334 (450)
T d1ffya3         257 WVISRQRVWGVPLPVFYAEN--GEIIMTKETVNHVADLFAEHGSNIWFEREAKDLLPEGFTHPGSPNGTFTKETDIMDVW  334 (450)
T ss_dssp             EECEESCSSSCBCCCEECTT--SCEECCHHHHHHHHHHHHHHCTHHHHHSCHHHHSSTTCCCSSCTTSCCEECCCEECHH
T ss_pred             hheeeecccccCcceeecCC--CCEecchhhhHHHHHhhhhcCccccccccccccccccccccCCCCCcceeeeeeeccc
Confidence            99999999999999999852  33332221111111000              0    00    1234578999999999


Q ss_pred             ecCCCccccccCCCCCChhHHhhcCCcceEeeeccccccHHHHHHHHHhHhcCCCCceEEEEeceEEcCCCccccccCCC
Q 002136          514 FSSALWPFSTLGWPDVSADDFKKFYPTTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGN  593 (961)
Q Consensus       514 f~S~l~~~~~~~~p~~~~~~~~~~~P~d~~~~G~Dil~fw~~~~i~~~~~l~~~~Pfk~v~~hg~v~d~~G~KMSKS~GN  593 (961)
                      |+|++++++.++++.      ..+||+|++++|+||+|||+++|++.++.+.|+.||++|++||+|+|.+|+|||||+||
T Consensus       335 fds~~~~~~~~~~~~------~~~~P~d~~~~G~Di~r~w~~~~~~~~~~~~~~~Pfk~v~~hG~vld~~G~KMSKS~GN  408 (450)
T d1ffya3         335 FDSGSSHRGVLETRP------ELSFPADMYLEGSDQYRGWFNSSITTSVATRGVSPYKFLLSHGFVMDGEGKKMSKSLGN  408 (450)
T ss_dssp             HHHHTHHHHTTTTST------TCCSSBSEEEEEGGGGTTHHHHHHHHHHHHHSSCSBSEEEEECCEECTTSCCCCSSSSC
T ss_pred             ccccccccccccccc------cccCCCcccccCcchhhHHHHHHHHHHHHhcCCCCcceEEEcceEECCCCCCCCCCCCC
Confidence            999999988877654      34799999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCchhhhhhcChhHHHHHHHhCCCCCccccCHHHHHHHH
Q 002136          594 VIDPIDTIKEFGADALRFTISLGTAGQDLSLSIERLTANK  633 (961)
Q Consensus       594 vI~p~dii~~yGaDalR~~L~~~~~~~D~~f~~~~~~~~~  633 (961)
                      +|+|.++|++||+|+|||||+++++++|++|+++.+++.+
T Consensus       409 ~I~p~dii~~yGaDalR~~l~s~~~~~D~~fs~~~l~~~~  448 (450)
T d1ffya3         409 VIVPDQVVKQKGADIARLWVSSTDYLADVRISDEILKQTS  448 (450)
T ss_dssp             CCCHHHHHHHTCHHHHHHHHHTSCTTSCEECCHHHHHHHH
T ss_pred             CcCHHHHHHHhCcHHHHHHHHcCCCCCCcCcCHHHHHHhh
Confidence            9999999999999999999998766999999999998754
>d1ivsa4 c.26.1.1 (A:1-189,A:343-578) Valyl-tRNA synthetase (ValRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1ilea3 c.26.1.1 (A:1-197,A:387-641) Isoleucyl-tRNA synthetase (IleRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1h3na3 c.26.1.1 (A:1-225,A:418-686) Leucyl-tRNA synthetase (LeuRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1rqga2 c.26.1.1 (A:1-138,A:174-396) Methionyl-tRNA synthetase (MetRS) {Pyrococcus abyssi [TaxId: 29292]} Back     information, alignment and structure
>d1pfva2 c.26.1.1 (A:4-140,A:176-388) Methionyl-tRNA synthetase (MetRS) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2d5ba2 c.26.1.1 (A:1-348) Methionyl-tRNA synthetase (MetRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1wkaa1 b.51.1.1 (A:195-337) Valyl-tRNA synthetase (ValRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1ivsa2 a.27.1.1 (A:579-796) Valyl-tRNA synthetase (ValRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1udza_ b.51.1.1 (A:) Isoleucyl-tRNA synthetase (IleRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1ffya2 b.51.1.1 (A:201-394) Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1li5a2 c.26.1.1 (A:1-315) Cysteinyl-tRNA synthetase (CysRS) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1h3na2 b.51.1.1 (A:226-417) Leucyl-tRNA synthetase (LeuRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1ilea1 a.27.1.1 (A:642-821) Isoleucyl-tRNA synthetase (IleRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1ffya1 a.27.1.1 (A:645-917) Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1irxa2 c.26.1.1 (A:3-319) Class I lysyl-tRNA synthetase {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1h3na1 a.27.1.1 (A:687-814) Leucyl-tRNA synthetase (LeuRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1f7ua2 c.26.1.1 (A:136-483) Arginyl-tRNA synthetase (ArgRS) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1iq0a2 c.26.1.1 (A:97-466) Arginyl-tRNA synthetase (ArgRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1ivsa1 a.2.7.3 (A:797-862) Valyl-tRNA synthetase (ValRS) C-terminal domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1rqga1 a.27.1.1 (A:397-606) Methionyl-tRNA synthetase (MetRS) {Pyrococcus abyssi [TaxId: 29292]} Back     information, alignment and structure
>d2d5ba1 a.27.1.1 (A:349-500) Methionyl-tRNA synthetase (MetRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1pfva1 a.27.1.1 (A:389-550) Methionyl-tRNA synthetase (MetRS) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1j09a2 c.26.1.1 (A:1-305) Glutamyl-tRNA synthetase (GluRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1nzja_ c.26.1.1 (A:) Glutamyl-Q tRNA-Asp synthetase YadB {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1gtra2 c.26.1.1 (A:8-338) Glutaminyl-tRNA synthetase (GlnRS) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1jila_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1h3fa1 c.26.1.1 (A:5-347) Tyrosyl-tRNA synthetase (TyrRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1j1ua_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d2ts1a_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Bacillus stearothermophilus, nca 1503 [TaxId: 1422]} Back     information, alignment and structure
>d1r6ta2 c.26.1.1 (A:82-467) Tryptophanyl-tRNA synthetase (TrpRS) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1f7ua1 a.27.1.1 (A:484-607) Arginyl-tRNA synthetase (ArgRS) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1lrza1 a.2.7.4 (A:245-309) Methicillin resistance protein FemA probable tRNA-binding arm {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1n3la_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure